BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|255764496|ref|YP_003065012.2| excinuclease ABC subunit C [Candidatus Liberibacter asiaticus str. psy62] (616 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|15964924|ref|NP_385277.1| excinuclease ABC subunit C [Sinorhizobium meliloti 1021] gi|81634822|sp|Q92QX2|UVRC_RHIME RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|15074103|emb|CAC45750.1| Probable excinuclease ABC subunit C [Sinorhizobium meliloti 1021] Length = 674 Score = 605 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 321/614 (52%), Positives = 422/614 (68%), Gaps = 5/614 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+ML+ AG VLYVGKA +L+KR+ +Y H++RI M+ + ++ F T Sbjct: 60 KRLPNGPGVYRMLNEAGDVLYVGKARSLKKRVSNYAQGRGHSNRIARMVRETAHMEFVTT 119 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE+EALLLEAN+IKRL+PRFN+LLRDDKSFPYI++T + PALYKHR + + +G YFG Sbjct: 120 RTEIEALLLEANLIKRLRPRFNVLLRDDKSFPYIVVTGDTRAPALYKHRGARSRKGDYFG 179 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TINSLQR F LR+C DSVF RTRPCLL+QIKRCS PCT E+S Y E Sbjct: 180 PFASAGAVGRTINSLQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTNEVSDADYAEL 239 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + +K IA M +A+ D+E A ++RDRLAALSH+Q+H Sbjct: 240 VSEAKDFLSGKSQAVKATIASAMAEASENLDFERAALYRDRLAALSHVQSHQGINPAGVE 299 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+ +H ++CIQ FF GQN G +F K D A++LS FL QFY DKPCP Sbjct: 300 EADVFATHHEGGISCIQVFFFRTGQNWGNRAYFPKADPSIPPAEVLSAFLAQFYDDKPCP 359 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 +LL EE LL + ++ GYKV I VP++GEK+ ++E AL NA +H +KL+ Sbjct: 360 RQVLLCAPVEEQELLAQALSEKSGYKVSILVPQRGEKKDLVEHALANAREAHGRKLAETA 419 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ F F LP++P+RIEIYDNSHIMG +AVG MVV G GFVK QYRKFN+ Sbjct: 420 SQGRLLEGFAATFQLPYVPRRIEIYDNSHIMGTNAVGGMVVAGPEGFVKGQYRKFNIKST 479 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK-QEYSFPSWPDVVILDGGKGQLSAA 479 D+ DD MMR V+ RRFS+L+K E + + ++ FP+WPDV+++DGG+GQ++A Sbjct: 480 DITPGDDFGMMREVMTRRFSRLLKEEGKPDRSAEPGEDAGFPAWPDVILIDGGQGQMTAV 539 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 + +LK+L +E+ +T I +AKG R AG E+FF + E+ L RDP+LYFIQRLRDEAHR Sbjct: 540 RTILKELGIEDCVTAIGVAKGVDRDAGRERFFAEGRESFTLPPRDPVLYFIQRLRDEAHR 599 Query: 540 FAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAI +HR RRKK +PLDEI GIGP RKR LL FGT K +SR+ L S+ GIS+ Sbjct: 600 FAIGSHRARRKKEMVKNPLDEIAGIGPTRKRALLTHFGTAKAVSRAGINDLMSVNGISET 659 Query: 599 IACKIYNHFHKNTS 612 +A +Y HFH++ + Sbjct: 660 VARIVYEHFHEDAA 673 >gi|307300995|ref|ZP_07580764.1| excinuclease ABC, C subunit [Sinorhizobium meliloti BL225C] gi|306903950|gb|EFN34536.1| excinuclease ABC, C subunit [Sinorhizobium meliloti BL225C] Length = 674 Score = 605 bits (1560), Expect = e-171, Method: Composition-based stats. Identities = 321/614 (52%), Positives = 423/614 (68%), Gaps = 5/614 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+ML+ AG VLYVGKA +L+KR+ +Y H++RI M+ + ++ F T Sbjct: 60 KRLPNGPGVYRMLNEAGDVLYVGKARSLKKRVSNYAQGRGHSNRIARMVRETAHMEFVTT 119 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE+EALLLEAN+IKRL+PRFN+LLRDDKSFPYI++T + PALYKHR + + +G YFG Sbjct: 120 RTEIEALLLEANLIKRLRPRFNVLLRDDKSFPYIVVTGDTRAPALYKHRGARSRKGDYFG 179 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TINSLQR F LR+C DSVF RTRPCLL+QIKRCS PCT E+S Y E Sbjct: 180 PFASAGAVGRTINSLQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTNEVSDADYAEL 239 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + +K IA M +A+ D+E A ++RDRLAALSH+Q+H Sbjct: 240 VSEAKDFLSGKSQAVKATIASAMAEASENLDFERAALYRDRLAALSHVQSHQGINPAGVE 299 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++H ++CIQ FF GQN G +F K D A++LS FL QFY DKPCP Sbjct: 300 EADVFAIHHEGGISCIQVFFFRTGQNWGNRAYFPKADPSIPPAEVLSAFLAQFYDDKPCP 359 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 +LL EE LL + ++ GYKV I VP++GEK+ ++E AL NA +H +KL+ Sbjct: 360 RQVLLCAPVEEQELLAQALSEKSGYKVSILVPQRGEKKDLVEHALANAREAHGRKLAETA 419 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ F F LP++P+RIEIYDNSHIMG +AVG MVV G GFVK QYRKFN+ Sbjct: 420 SQGRLLEGFAATFQLPYVPRRIEIYDNSHIMGTNAVGGMVVAGPEGFVKGQYRKFNIKST 479 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK-QEYSFPSWPDVVILDGGKGQLSAA 479 D+ DD MMR V+ RRFS+L+K E + + ++ FP+WPDV+++DGG+GQ++A Sbjct: 480 DITPGDDFGMMREVMTRRFSRLLKEEGKPDRSAEPGEDAGFPAWPDVILIDGGQGQMTAV 539 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 + +LK+L +E+ +T I +AKG R AG E+FF + E+ L RDP+LYFIQRLRDEAHR Sbjct: 540 RTILKELGIEDCVTAIGVAKGVDRDAGRERFFAEGRESFTLPPRDPVLYFIQRLRDEAHR 599 Query: 540 FAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAI +HR RRKK +PLDEI GIGP RKR LL FGT K +SR+ L S+ GIS+ Sbjct: 600 FAIGSHRARRKKEMVKNPLDEIAGIGPTRKRALLTHFGTAKAVSRAGINDLMSVNGISET 659 Query: 599 IACKIYNHFHKNTS 612 +A +Y HFH++ + Sbjct: 660 VARIVYEHFHEDAA 673 >gi|116251353|ref|YP_767191.1| excinuclease ABC subunit C [Rhizobium leguminosarum bv. viciae 3841] gi|119367822|sp|Q1MIX8|UVRC_RHIL3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|115256001|emb|CAK07082.1| putative uvrABC system protein C [Rhizobium leguminosarum bv. viciae 3841] Length = 680 Score = 605 bits (1559), Expect = e-170, Method: Composition-based stats. Identities = 320/618 (51%), Positives = 425/618 (68%), Gaps = 9/618 (1%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + G VLYVGKA +L+KR+ +Y H++RI M+ Q N+ F T Sbjct: 62 KRLPNSPGVYRMFNAEGDVLYVGKARSLKKRVNNYAVGRVHSNRIAQMVRQTANMEFVTT 121 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+LLRDDKSFPYILIT H+ PA++KHR + +G YFG Sbjct: 122 RTETEALLLEANLIKRLRPRFNVLLRDDKSFPYILITGDHRAPAIFKHRGARARKGDYFG 181 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TINSLQR F +R+C DSVF RTRPCLL+QIKRCSGPCT E+S Y E Sbjct: 182 PFASAGAVGRTINSLQRAFLIRTCTDSVFETRTRPCLLYQIKRCSGPCTHEVSDGGYGEL 241 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + +K +A MNQA D+E A I+RDRLAALSH+Q+H Sbjct: 242 VQEAKDFLSGKSQKVKSHMAEAMNQAAEDLDFERAAIYRDRLAALSHVQSHQGINPAGVE 301 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++H ++CIQ FF GQN G +F K D + ++A++L+ FL QFY DKP P Sbjct: 302 EADVFAIHHEGGISCIQVFFFRTGQNWGNRAYFPKADPQLSSAEVLNSFLAQFYDDKPVP 361 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + I+LS+ EE LL + ++ G+KV + VP++GEKR +++ + NA +H +KL+ Sbjct: 362 KQIMLSQTVEELELLAAALSEKAGHKVSMLVPQRGEKRDLVDHVVGNAREAHGRKLAETA 421 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ F + F L + P+RIEIYDNSHIMG +AVG MVV G GFVKNQYRKFN+ Sbjct: 422 SQSRLLEGFKETFGLAYAPQRIEIYDNSHIMGTNAVGGMVVAGPEGFVKNQYRKFNIKST 481 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLN-----FHPKKQEYSFPSWPDVVILDGGKGQ 475 D+ DD MM+ V+ RRFS+LIK E + P + FP+WPDV+++DGG+GQ Sbjct: 482 DITPGDDFGMMKEVMTRRFSRLIKEEGIPDRTAQVATPDAADMPFPTWPDVILIDGGQGQ 541 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 ++A + +L +L + + +T I IAKG R AG E+FF E+ L RDP+LYFIQR+RD Sbjct: 542 MTAVRAILAELGITDSVTAIGIAKGVDRDAGRERFFPPGRESFTLPPRDPVLYFIQRMRD 601 Query: 536 EAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFAI +HR RRKK +PLDEI GIGP RKR LLQ FGT K +SR++ L ++EG Sbjct: 602 EAHRFAIGSHRARRKKEMIKNPLDEIGGIGPSRKRALLQHFGTAKAVSRAALSDLMAVEG 661 Query: 595 ISKKIACKIYNHFHKNTS 612 IS+ +A ++YNHFH + + Sbjct: 662 ISEAVARQVYNHFHDDAA 679 >gi|307317729|ref|ZP_07597167.1| excinuclease ABC, C subunit [Sinorhizobium meliloti AK83] gi|306896491|gb|EFN27239.1| excinuclease ABC, C subunit [Sinorhizobium meliloti AK83] Length = 674 Score = 604 bits (1558), Expect = e-170, Method: Composition-based stats. Identities = 322/614 (52%), Positives = 422/614 (68%), Gaps = 5/614 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+ML+ AG VLYVGKA +L+KR+ +Y H++RI M+ + ++ F T Sbjct: 60 KRLPNGPGVYRMLNEAGDVLYVGKARSLKKRVSNYAQGRGHSNRIARMVRETAHMEFVTT 119 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE+EALLLEAN+IKRL+PRFN+LLRDDKSFPYI++T + PALYKHR + + +G YFG Sbjct: 120 RTEIEALLLEANLIKRLRPRFNVLLRDDKSFPYIVVTGDTRAPALYKHRGARSRKGDYFG 179 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TINSLQR F LR+C DSVF RTRPCLL+QIKRCS PCT E+S Y E Sbjct: 180 PFASAGAVGRTINSLQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTNEVSDADYAEL 239 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + +K IA M +A+ D+E A ++RDRLAALSH+Q+H Sbjct: 240 VSEAKDFLSGKSQAVKATIASAMAEASENLDFERAALYRDRLAALSHVQSHQGINPAGVE 299 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++H ++CIQ FF GQN G +F K D A++LS FL QFY DKPCP Sbjct: 300 EADVFAIHHEGGISCIQVFFFRTGQNWGNRAYFPKADPSIPPAEVLSAFLAQFYDDKPCP 359 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 +LL EE LL + ++ GYKV I VP++GEK+ ++E AL NA +H +KL+ Sbjct: 360 RQVLLCAPVEEQELLAQALSEKSGYKVSILVPQRGEKKDLVEHALANAREAHGRKLAETA 419 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ F F LP++P+RIEIYDNSHIMG +AVG MVV G GFVK QYRKFN+ Sbjct: 420 SQGRLLEGFAATFQLPYVPRRIEIYDNSHIMGTNAVGGMVVAGPEGFVKGQYRKFNIKST 479 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK-QEYSFPSWPDVVILDGGKGQLSAA 479 D+ DD MMR V+ RRFS+L+K E + + ++ FP+WPDV+++DGG+GQ++A Sbjct: 480 DITPGDDFGMMREVMTRRFSRLLKEEGKPDRSAEPGEDAGFPAWPDVILIDGGQGQMTAV 539 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 + +LK L VE+ +T I +AKG R AG E+FF + E+ L RDP+LYFIQRLRDEAHR Sbjct: 540 RTILKDLGVEDCVTAIGVAKGVDRDAGRERFFAEGRESFTLPPRDPVLYFIQRLRDEAHR 599 Query: 540 FAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAI +HR RRKK +PLDEI GIGP RKR LL FGT K +SR+ L S+ GIS+ Sbjct: 600 FAIGSHRARRKKEMVKNPLDEIAGIGPTRKRALLTHFGTAKAVSRAGINDLMSVNGISET 659 Query: 599 IACKIYNHFHKNTS 612 +A +Y HFH++ + Sbjct: 660 VARIVYEHFHEDAA 673 >gi|209548689|ref|YP_002280606.1| excinuclease ABC subunit C [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534445|gb|ACI54380.1| excinuclease ABC, C subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 680 Score = 604 bits (1556), Expect = e-170, Method: Composition-based stats. Identities = 320/618 (51%), Positives = 423/618 (68%), Gaps = 9/618 (1%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + G VLYVGKA +L+KR+ +Y H++RI M+ Q N+ F T Sbjct: 62 KRLPNSPGVYRMFNAEGDVLYVGKARSLKKRVGNYAVGRVHSNRIAQMVRQTANMEFVTT 121 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+LLRDDKSFPYILIT H+ PA++KHR + +G YFG Sbjct: 122 RTETEALLLEANLIKRLRPRFNVLLRDDKSFPYILITGDHRAPAIFKHRGARARKGDYFG 181 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TINSLQR F +R+C DSVF RTRPCLL+QIKRCSGPCT E+S Y E Sbjct: 182 PFASAGAVGRTINSLQRAFLIRTCTDSVFETRTRPCLLYQIKRCSGPCTHEVSDAGYGEL 241 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + +K +A MNQA D+E A I+RDRLAALSH+Q+H Sbjct: 242 VQEAKDFLSGKSQKVKSHMAEAMNQAAEDLDFERAAIYRDRLAALSHVQSHQGINPAGVE 301 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++H ++CIQ FF GQN G +F K D + + A++L+ FL QFY DKP P Sbjct: 302 EADVFAIHHEGGVSCIQVFFFRTGQNWGNRAYFPKADPQLSGAEVLNAFLAQFYDDKPVP 361 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + I+LSE EE LL + ++ G+KV I VP++GEKR +++ + NA +H +KL+ Sbjct: 362 KQIMLSETIEEMELLAAALSEKAGHKVAILVPRRGEKRDLVDHVVGNAREAHGRKLAETA 421 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ F + F L + P+RIEIYDNSHIMG +AVG MVV G GFVKNQYRKFN+ Sbjct: 422 SQSRLLEGFKETFGLAYAPQRIEIYDNSHIMGTNAVGGMVVAGPEGFVKNQYRKFNIKST 481 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS-----FPSWPDVVILDGGKGQ 475 D+ DD MM+ V+ RRFS+LIK E + + FP+WPDV+++DGG+GQ Sbjct: 482 DITPGDDFGMMKEVMTRRFSRLIKEEGIPDRTAQATAADAADMPFPTWPDVILIDGGQGQ 541 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 ++A + +L +L + + +T I IAKG R AG E+FF E+ L RDP+LYF+QR+RD Sbjct: 542 MTAVRAILTELGITDSVTAIGIAKGVDRDAGRERFFPPGRESFTLPPRDPVLYFVQRMRD 601 Query: 536 EAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFAI +HR RRKK +PLDEI GIGP RKR LLQ FGT K +SR++ L ++EG Sbjct: 602 EAHRFAIGSHRARRKKEMVKNPLDEIGGIGPSRKRALLQHFGTAKAVSRAALSDLMAVEG 661 Query: 595 ISKKIACKIYNHFHKNTS 612 IS+ +A ++YNHFH + + Sbjct: 662 ISEAVAKQVYNHFHDDAA 679 >gi|241203968|ref|YP_002975064.1| excinuclease ABC subunit C [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857858|gb|ACS55525.1| excinuclease ABC, C subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 680 Score = 604 bits (1556), Expect = e-170, Method: Composition-based stats. Identities = 320/618 (51%), Positives = 425/618 (68%), Gaps = 9/618 (1%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + G VLYVGKA +L+KR+ +Y H++RI M+ Q N+ F T Sbjct: 62 KRLPNSPGVYRMFNAEGDVLYVGKARSLKKRVNNYAVGRVHSNRIAQMVRQTANMEFVTT 121 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+LLRDDKSFPYILIT H+ PA++KHR + +G YFG Sbjct: 122 RTETEALLLEANLIKRLRPRFNVLLRDDKSFPYILITGDHRAPAIFKHRGARARKGDYFG 181 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TINSLQR F +R+C DSVF RTRPCLL+QIKRCSGPCT E+S Y E Sbjct: 182 PFASAGAVGRTINSLQRAFLIRTCTDSVFETRTRPCLLYQIKRCSGPCTHEVSDGGYGEL 241 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + +K +A MNQA D+E A I+RDRLAALSH+Q+H Sbjct: 242 VQEAKDFLSGKSQKVKSHMAEAMNQAAEDLDFERAAIYRDRLAALSHVQSHQGINPAGVE 301 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++H ++CIQ FF GQN G +F K D + ++A++L+ FL QFY DKP P Sbjct: 302 EADVFAIHHEGGISCIQVFFFRTGQNWGNRAYFPKADPQLSSAEVLNSFLAQFYDDKPVP 361 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + I+LS+ EE LL + ++ G+KV I VP++GEKR +++ + NA +H +KL+ Sbjct: 362 KQIMLSQTVEELELLAAALSEKAGHKVSILVPQRGEKRDLVDHVVGNAREAHGRKLAETA 421 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ F + F L + P+RIEIYDNSHIMG +AVG MVV G GFVKNQYRKFN+ Sbjct: 422 SQSRLLEGFKETFGLAYAPQRIEIYDNSHIMGTNAVGGMVVAGPEGFVKNQYRKFNIKST 481 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLN-----FHPKKQEYSFPSWPDVVILDGGKGQ 475 D+ DD MM+ V+ RRFS+LIK + + P + FP+WPDV+++DGG+GQ Sbjct: 482 DITPGDDFGMMKEVMSRRFSRLIKEDGIPDRTAQVATPDAADMPFPTWPDVILIDGGQGQ 541 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 ++A + +L +L + + +T I IAKG R AG E+FF E+ L RDP+LYFIQR+RD Sbjct: 542 MTAVRAILAELGITDSVTAIGIAKGVDRDAGRERFFPPGRESFTLPPRDPVLYFIQRMRD 601 Query: 536 EAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFAI +HR RRKK +PLDEI GIGP RKR LLQ FGT K +SR++ L ++EG Sbjct: 602 EAHRFAIGSHRARRKKEMIKNPLDEIGGIGPSRKRALLQHFGTAKAVSRAALSDLMAVEG 661 Query: 595 ISKKIACKIYNHFHKNTS 612 IS+ +A ++YNHFH + + Sbjct: 662 ISEAVAKQVYNHFHDDAA 679 >gi|327193359|gb|EGE60262.1| excinuclease ABC protein, C subunit [Rhizobium etli CNPAF512] Length = 679 Score = 603 bits (1555), Expect = e-170, Method: Composition-based stats. Identities = 321/618 (51%), Positives = 424/618 (68%), Gaps = 9/618 (1%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + G VLYVGKA +L+KR+ +Y H++RI M+ Q N+ F T Sbjct: 61 KRLPNSPGVYRMFNAEGDVLYVGKARSLKKRVGNYAVGRVHSNRIAQMVRQTANMEFVTT 120 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+LLRDDKSFPYILIT H+ PA++KHR + +G YFG Sbjct: 121 RTETEALLLEANLIKRLRPRFNVLLRDDKSFPYILITGDHRAPAIFKHRGARARKGDYFG 180 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TINSLQR F +R+C DSVF RTRPCLL+QIKRCSGPCT E+S E Y E Sbjct: 181 PFASAGAVGRTINSLQRAFLIRTCTDSVFETRTRPCLLYQIKRCSGPCTHEVSDEGYAEL 240 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + +K +A MNQA D+E A I+RDRLAALSH+Q+H Sbjct: 241 VQEAKDFLSGKSQKVKSHMAEAMNQAAEDLDFERAAIYRDRLAALSHVQSHQGINPAGVE 300 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++H ++CIQ FF GQN G +F K D + + A++L+ FL QFY DKP P Sbjct: 301 EADVFAIHHEGGVSCIQVFFFRTGQNWGNRAYFPKADPQLSGAEVLNAFLAQFYDDKPVP 360 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + I+LSE +E LL + ++ G+KV I VP++GEKR +++ + NA +H +KL+ Sbjct: 361 KQIMLSETVDELELLAAALSEKAGHKVSILVPQRGEKRDLVDHVVGNAREAHGRKLAETA 420 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ F + F L + P+RIEIYDNSHIMG +AVG MVV G GFVKNQYRKFN+ Sbjct: 421 SQSRLLEGFKETFGLAYAPQRIEIYDNSHIMGTNAVGGMVVAGPEGFVKNQYRKFNIKST 480 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLN-----FHPKKQEYSFPSWPDVVILDGGKGQ 475 D+ DD MM+ V+ RRFS+LIK E + + FP+WPDV+++DGG+GQ Sbjct: 481 DITPGDDFGMMKEVMTRRFSRLIKEEGIPDRTAQAGPADAADMPFPAWPDVILIDGGQGQ 540 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 ++A + +L +L + + +T I IAKG R AG E+FF E+ L RDP+LYFIQR+RD Sbjct: 541 MTAVRAILAELGITDSVTAIGIAKGVDRDAGRERFFPPGRESFTLPPRDPVLYFIQRMRD 600 Query: 536 EAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFAI +HR RRKK +PLDEI GIGP RKR LLQ FGT K +SR++ L ++EG Sbjct: 601 EAHRFAIGSHRARRKKEMVKNPLDEIGGIGPSRKRALLQHFGTAKAVSRAALSDLMAVEG 660 Query: 595 ISKKIACKIYNHFHKNTS 612 IS+ +A ++YNHFH + + Sbjct: 661 ISEAVARQVYNHFHDDAA 678 >gi|150396006|ref|YP_001326473.1| excinuclease ABC subunit C [Sinorhizobium medicae WSM419] gi|150027521|gb|ABR59638.1| excinuclease ABC, C subunit [Sinorhizobium medicae WSM419] Length = 674 Score = 601 bits (1550), Expect = e-170, Method: Composition-based stats. Identities = 324/614 (52%), Positives = 422/614 (68%), Gaps = 5/614 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +P PGVY+ML+ AG VLYVGKA +L+KR+ SY H++RI M+ + N+ F T Sbjct: 60 KVLPNGPGVYRMLNEAGDVLYVGKARSLKKRVSSYAQGRGHSNRIARMVRETANMEFVTT 119 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE+EALLLEAN+IKRL+PRFN+LLRDDKSFPYI++T + PALYKHR + + +G YFG Sbjct: 120 RTEIEALLLEANLIKRLRPRFNVLLRDDKSFPYIVLTGDTRAPALYKHRGARSRKGDYFG 179 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TINSLQR F LR+C DSVF RTRPCLL QIKRCS PCT EIS + Y E Sbjct: 180 PFASAGAVGRTINSLQRAFLLRTCTDSVFETRTRPCLLHQIKRCSAPCTNEISDDDYAEL 239 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + +K IA M++A+ D+E A ++RDRLAALSH+Q+H Sbjct: 240 VSEAKDFLSGKSQAVKATIATAMSEASENLDFERAALYRDRLAALSHVQSHQGINPAGVE 299 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++H ++CIQ FF GQN G +F K D T A++LS FL QFY DKPCP Sbjct: 300 EADVFAIHHEGGISCIQVFFFRTGQNWGNRAYFPKADPSLTPAEVLSAFLAQFYDDKPCP 359 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 ILL +E LL + ++ GYKV I VP++GEK+ ++E AL NA +H +KL+ Sbjct: 360 RQILLCATVDEQDLLAQALSEKSGYKVSILVPQRGEKKDLVEHALGNAREAHGRKLAETA 419 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S + +L+ F F LP++P+RIEIYDNSHIMG +AVG MVV G GFVK QYRKFN+ Sbjct: 420 SQERLLEGFAATFQLPYVPRRIEIYDNSHIMGTNAVGGMVVAGPEGFVKGQYRKFNIRST 479 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK-QEYSFPSWPDVVILDGGKGQLSAA 479 D+ DD MMR V+ RRFS+L+K E + + ++ FP+WPDV+++DGG+GQ++A Sbjct: 480 DITPGDDFGMMREVMTRRFSRLLKEEGKPDRAAEPGEDAGFPAWPDVILIDGGQGQMTAV 539 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 + +L +L +E+ +T I +AKG R AG E+FF E L RDP+LYFIQRLRDEAHR Sbjct: 540 RTILGELGIEDCVTAIGVAKGVDRDAGRERFFASGREGFTLPPRDPVLYFIQRLRDEAHR 599 Query: 540 FAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAI +HR RRKK +PLDEI GIGP RKR LL FGT K +SR+ L S+ GIS+ Sbjct: 600 FAIGSHRARRKKEMVRNPLDEIAGIGPTRKRALLTHFGTAKAVSRAGINDLMSVSGISET 659 Query: 599 IACKIYNHFHKNTS 612 +A +Y HFH++ + Sbjct: 660 VARIVYEHFHEDAA 673 >gi|222148164|ref|YP_002549121.1| excinuclease ABC subunit C [Agrobacterium vitis S4] gi|221735152|gb|ACM36115.1| excinuclease ABC C subunit [Agrobacterium vitis S4] Length = 690 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 328/622 (52%), Positives = 434/622 (69%), Gaps = 11/622 (1%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M++ G VLYVGKA +L+KR+ +Y H++R+T M+ + ++ F T Sbjct: 63 KKLPNNPGVYRMMNGDGDVLYVGKARSLKKRVSNYAQGRLHSNRLTRMVRETAHMEFVTT 122 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEALLLEAN+IKRL+PR+N+LLRDDKSFPYILIT + PA+YKHR + +G YFG Sbjct: 123 RTEVEALLLEANLIKRLRPRYNVLLRDDKSFPYILITGDGRAPAIYKHRGARARKGDYFG 182 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TINSLQR F LR+C DSVF RTRPCLL+QIKRCSGPCT EIS Y Sbjct: 183 PFASAGAVGRTINSLQRAFLLRTCTDSVFESRTRPCLLYQIKRCSGPCTHEISDADYGVL 242 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + N+KE +AR MN+A D+E A + RDRLA LSH+Q+H Sbjct: 243 VKEAKDFLSGKSQNVKEAMARTMNEAAETLDFERAAVFRDRLAGLSHVQSHQGINPAGVE 302 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++H L CIQ FF GQN G +F K D + T A++LS FL QFY DKPCP Sbjct: 303 EADIFAIHHEGGLTCIQVFFFRTGQNWGNRAYFPKADPQMTGAEVLSAFLAQFYDDKPCP 362 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 +LLSE +E LL ++ ++ GYKV I VP++GEK+ ++E NA +H +KL+ Sbjct: 363 RQVLLSEGIDEQDLLSLALSEKAGYKVTILVPQRGEKKDLVEHVHGNAREAHGRKLAETA 422 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S + +LK F + FAL ++P+RIEIYDNSHIMG +AVG MVV G GFV+NQYRKFN+ Sbjct: 423 SQERLLKGFAETFALAYVPRRIEIYDNSHIMGTNAVGGMVVAGPEGFVRNQYRKFNIKST 482 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS-------FPSWPDVVILDGGK 473 D+ DD MMR V+ RRFS+L+K E + +P + + FP+WPDV+++DGG+ Sbjct: 483 DITPGDDFGMMREVMTRRFSRLLKEEGKPDRNPNRSTGTEEGADAVFPAWPDVILIDGGQ 542 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 GQ++A + +LK+L++ + +T I +AKG R AG E+FF + L RDP+LYFIQRL Sbjct: 543 GQMTAVRAILKELDITDCVTAIGVAKGVDRDAGRERFFAQGKPDFTLPPRDPVLYFIQRL 602 Query: 534 RDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDEAHRFAI +HR RRKK +PLDEI GIGP RKR LLQ FGT K +SR++ L ++ Sbjct: 603 RDEAHRFAIGSHRARRKKEMVKNPLDEIGGIGPTRKRALLQHFGTAKAVSRAAMNDLMAV 662 Query: 593 EGISKKIACKIYNHFHKNTSHT 614 +GIS+ +A +IYNHFH+N+ H+ Sbjct: 663 DGISEAVARQIYNHFHENSGHS 684 >gi|110634325|ref|YP_674533.1| excinuclease ABC subunit C [Mesorhizobium sp. BNC1] gi|119367666|sp|Q11GV7|UVRC_MESSB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|110285309|gb|ABG63368.1| Excinuclease ABC subunit C [Chelativorans sp. BNC1] Length = 653 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 310/613 (50%), Positives = 411/613 (67%), Gaps = 6/613 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M++ G VLYVGKA +L+KR+ +Y H++RI MI + + F VT Sbjct: 40 KRLPNAPGVYRMVNTEGDVLYVGKARSLKKRVTNYAQGRGHSNRIERMIRETATMEFVVT 99 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T H P ++KHR + + +G YFG Sbjct: 100 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGNHPAPGIFKHRGARSRRGDYFG 159 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TINSLQR F LR+C DSVF RTRPCLL+QIKRCSGPCT EIS E Y Sbjct: 160 PFASAGAVGRTINSLQRAFLLRTCTDSVFESRTRPCLLYQIKRCSGPCTREISVEDYATL 219 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + +K +IA M +A+ D+E A I+RDRLAALSH+Q+H Sbjct: 220 VKEAKDFLSGRSSTVKAEIATAMQEASQALDFERAAIYRDRLAALSHVQSHQGINPQGLE 279 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ CIQ FF GQN G +F K D + ++L FL QFY DKPCP Sbjct: 280 EADVFAIHQEGGQTCIQVFFFRTGQNWGNRAYFPKADPALGHGEVLGSFLAQFYDDKPCP 339 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 ILLS E+ LL + + G KV+++VP +GEK+ + + AL NA + ++L+ Sbjct: 340 RLILLSHPVEDQDLLAEALSARAGRKVQVSVPARGEKKDLTDHALQNAREALGRRLAETS 399 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ + F L P+RIE+YDNSHIMG +AVG M+V G GFVKNQYRKFN+ Sbjct: 400 SQARLLEGLAETFGLEAAPRRIEVYDNSHIMGTNAVGAMIVAGPEGFVKNQYRKFNIRSA 459 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEE--NLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 ++ DD MMR V++RRF++LIK + + + SFP+WPD++++DGG+GQ+SA Sbjct: 460 EITPGDDFGMMREVMQRRFARLIKEQGLPGNGSEAEDSDASFPAWPDLILIDGGQGQMSA 519 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 + +L L + + +T I +AKG R AG E+FF++ L RDP+LYF+QRLRDEAH Sbjct: 520 VRQILDDLGIADLVTAIGVAKGVDRDAGRERFFMEGRPPFTLPPRDPVLYFVQRLRDEAH 579 Query: 539 RFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAI +HR RRKK +PLDEI GIGP RKR LL FGT K +SR++ E L + GIS+ Sbjct: 580 RFAIGSHRARRKKEMVKNPLDEIAGIGPGRKRALLHHFGTAKAVSRAAVEDLMEVGGISE 639 Query: 598 KIACKIYNHFHKN 610 IA IYNHFH++ Sbjct: 640 SIARLIYNHFHES 652 >gi|227821493|ref|YP_002825463.1| excinuclease ABC subunit C [Sinorhizobium fredii NGR234] gi|227340492|gb|ACP24710.1| UvrABC system protein C [Sinorhizobium fredii NGR234] Length = 673 Score = 597 bits (1540), Expect = e-168, Method: Composition-based stats. Identities = 326/613 (53%), Positives = 425/613 (69%), Gaps = 5/613 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +P PGVY+M + AG VLYVGKA +L+KR+ +Y H++RI M+ + N+ F T Sbjct: 60 KLLPNGPGVYRMFNEAGDVLYVGKARSLKKRVNNYAQGRGHSNRIARMVRETANMEFVTT 119 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE+EALLLEAN+IKRL+PRFN+LLRDDKSFPYI++T + PALYKHR + + +G YFG Sbjct: 120 RTEIEALLLEANLIKRLRPRFNVLLRDDKSFPYIVVTGDSRAPALYKHRGARSRKGDYFG 179 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TINSLQR F LR+C DSVF RTRPCLL+QIKRCS PCTGEIS Y E Sbjct: 180 PFASAGAVGRTINSLQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTGEISDPDYAEL 239 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 VHEAK FLSG + +K IA M++A+ D+E A ++RDRLAALSH+Q++ Sbjct: 240 VHEAKDFLSGKSQAVKATIAAAMSEASENLDFERAALYRDRLAALSHVQSYQGINPAGVE 299 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++H ++CIQ FF GQN G +F K D A++LS FL QFY DKPCP Sbjct: 300 EADVFAIHHEGGISCIQVFFFRTGQNWGNRAYFPKADPSLPAAEVLSAFLAQFYDDKPCP 359 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 ILL E +E LL + ++ GYKV I VP++GEK+ ++E A NA +H +KL+ Sbjct: 360 RQILLCEAVDEQELLGQALSEKSGYKVSILVPQRGEKKDLVEHAQANAREAHGRKLAETA 419 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ F + F LP +P+RIEIYDNSHIMG +AVG MVV G GFVK QYRKFN+ Sbjct: 420 SQSRLLEGFAETFKLPSVPRRIEIYDNSHIMGTNAVGGMVVAGPEGFVKGQYRKFNIKST 479 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEY-SFPSWPDVVILDGGKGQLSAA 479 D+ DD MMR V+ RRFS+L+K E + + E +FP+WPDV+++DGG+GQ++A Sbjct: 480 DITPGDDFGMMREVMTRRFSRLLKEEGKPDRSSEASEDTAFPAWPDVILIDGGQGQMTAV 539 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 + +LK+L+VE+ +T I IAKG R AG E+FFV+ E+ L RDP+LYFIQRLRDEAHR Sbjct: 540 RAILKELDVEDCVTAIGIAKGVDRDAGRERFFVEGKESFTLPPRDPVLYFIQRLRDEAHR 599 Query: 540 FAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAI +HR RRKK +PLDEI GIGP RKR LL FGT K +SR+ L ++ GIS+ Sbjct: 600 FAIGSHRARRKKEMVKNPLDEIAGIGPTRKRALLTHFGTAKAVSRAGINDLMAVNGISET 659 Query: 599 IACKIYNHFHKNT 611 +A +Y HFH++ Sbjct: 660 VARLVYAHFHEDA 672 >gi|190891161|ref|YP_001977703.1| excinuclease ABC protein, C subunit [Rhizobium etli CIAT 652] gi|190696440|gb|ACE90525.1| excinuclease ABC protein, C subunit [Rhizobium etli CIAT 652] Length = 679 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 322/618 (52%), Positives = 423/618 (68%), Gaps = 9/618 (1%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + G VLYVGKA +L+KR+ +Y H++RI M+ Q N+ F T Sbjct: 61 KRLPNSPGVYRMFNAEGDVLYVGKARSLKKRVGNYAVGRVHSNRIAQMVRQTANMEFVTT 120 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+LLRDDKSFPYILIT H+ PA++KHR + +G YFG Sbjct: 121 RTETEALLLEANLIKRLRPRFNVLLRDDKSFPYILITGDHRAPAIFKHRGARARKGDYFG 180 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TINSLQR F +R+C DSVF RTRPCLL+QIKRCSGPCT E+S E Y E Sbjct: 181 PFASAGAVGRTINSLQRAFLIRTCTDSVFETRTRPCLLYQIKRCSGPCTHEVSDEGYGEL 240 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + +K +A MNQA D+E A I+RDRLAALSH+Q+H Sbjct: 241 VQEAKDFLSGKSQKVKSHMAEAMNQAAEDLDFERAAIYRDRLAALSHVQSHQGINPAGVE 300 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++H ++CIQ FF GQN G +F K D + + A++L+ FL QFY DKP P Sbjct: 301 EADVFAIHHEGGVSCIQVFFFRTGQNWGNRAYFPKADPQLSGAEVLNAFLAQFYDDKPVP 360 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + I+LSE EE LL + ++ G+KV I VP++GEKR +++ + NA H +KL+ Sbjct: 361 KQIMLSETVEELELLAAALSEKAGHKVSILVPQRGEKRDLVDHVVGNAREGHGRKLAETA 420 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ F + F L + P+RIEIYDNSHIMG +AVG MVV G GFVKNQYRKFN+ Sbjct: 421 SQSRLLEGFKETFGLAYAPQRIEIYDNSHIMGTNAVGGMVVAGPEGFVKNQYRKFNIKST 480 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS-----FPSWPDVVILDGGKGQ 475 D+ DD MM+ V+ RRFS+LIK E + + FP+WPDV+++DGG+GQ Sbjct: 481 DITPGDDFGMMKEVMTRRFSRLIKEEGIPDRTAQATAADAADMPFPAWPDVILIDGGQGQ 540 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 ++A + +L +L + + +T I IAKG R AG E+FF E+ L RDP+LYFIQR+RD Sbjct: 541 MTAVRAILAELGLTDSVTAIGIAKGVDRDAGRERFFPPGRESFTLPPRDPVLYFIQRMRD 600 Query: 536 EAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFAI +HR RRKK +PLDEI GIGP RKR LLQ FGT K +SR++ L ++EG Sbjct: 601 EAHRFAIGSHRARRKKEMVKNPLDEIGGIGPSRKRALLQHFGTAKAVSRAALSDLMAVEG 660 Query: 595 ISKKIACKIYNHFHKNTS 612 IS+ +A ++YNHFH + + Sbjct: 661 ISEAVARQVYNHFHDDAA 678 >gi|256060824|ref|ZP_05450984.1| excinuclease ABC subunit C [Brucella neotomae 5K33] gi|261324816|ref|ZP_05964013.1| UvrABC system protein C [Brucella neotomae 5K33] gi|261300796|gb|EEY04293.1| UvrABC system protein C [Brucella neotomae 5K33] Length = 690 Score = 595 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 312/609 (51%), Positives = 419/609 (68%), Gaps = 5/609 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + G VLYVGKA NL+KR+ +Y H++RIT MI + + F VT Sbjct: 81 KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 140 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T H+ P ++KHR + + +G YFG Sbjct: 141 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 200 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TIN+LQR F LR+C DSVF RTRPCLL+QIKRCS PCT EIS E Y Sbjct: 201 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 260 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + ++K+ +A M A+ D+E A ++RDRLAALSH+Q+H Sbjct: 261 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 320 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ + CIQ FF GQN G +F K DS A++L FL QFY DKPCP Sbjct: 321 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYVDKPCP 380 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +LLSE EE SL+ + + G+KV+ +VP++GEK+++++ AL NA + ++L+ Sbjct: 381 KLVLLSETVEEQSLITEALSTRAGHKVQASVPQRGEKKELVQHALTNAREALGRRLAETS 440 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ + F LP P+RIE+YDNSHIMG +AVG M+V G GFVKNQYRKFN+ Sbjct: 441 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 500 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 D+ DD MMR V+ERRFS+L+K + + +FP+WPDV+++DGG+GQ+ A + Sbjct: 501 DITPGDDFGMMREVIERRFSRLVKEHGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 559 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 +L ++ + + +T+I IAKG R AG E+FF++ + L RDP+LYFIQRLRDEAHRF Sbjct: 560 QILGEMGISDLVTVIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 619 Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI THR RRKK +PLDEI GIGP RKR LL FGT K +SR++ E L I+GIS+ + Sbjct: 620 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 679 Query: 600 ACKIYNHFH 608 A I++HF Sbjct: 680 ARAIHDHFR 688 >gi|239831533|ref|ZP_04679862.1| excinuclease ABC, C subunit [Ochrobactrum intermedium LMG 3301] gi|239823800|gb|EEQ95368.1| excinuclease ABC, C subunit [Ochrobactrum intermedium LMG 3301] Length = 702 Score = 594 bits (1532), Expect = e-167, Method: Composition-based stats. Identities = 315/610 (51%), Positives = 416/610 (68%), Gaps = 5/610 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + G VLYVGKA NL+KR+ +Y H++RIT MI + + F VT Sbjct: 91 KRLPNNPGVYRMFNGDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 150 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T H+ P ++KHR + + +G YFG Sbjct: 151 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGDHRAPGIFKHRGARSRKGDYFG 210 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TIN+LQR F LR+C DSVF RTRPCLLFQIKRCSGPCT EIS E Y E Sbjct: 211 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLFQIKRCSGPCTREISDEDYAEL 270 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V+EAK FLSG + ++K+ +A M A+ D+E A ++RDRLAALSH+Q+H Sbjct: 271 VNEAKAFLSGKSQSVKDHLATAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 330 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ + CIQ FF GQN G +F K DS A++L FL QFY DKP P Sbjct: 331 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPSP 390 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 +LLSE EE SL+ + + G+KV++ VP++GEK+ +++ AL NA + ++L+ Sbjct: 391 RLVLLSETVEEQSLIAEALSTRAGHKVQVNVPQRGEKKDLVDHALTNAREALGRRLAETS 450 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ + F L P+RIE+YDNSHIMG +AVG M+V G GFVKNQYRKFN+ Sbjct: 451 SQARLLQGMAETFGLSQPPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 510 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQ-EYSFPSWPDVVILDGGKGQLSAA 479 D+ DD MMR V+ERRFS+L+K + +FP+WPDV+++DGG+GQ+ A Sbjct: 511 DITPGDDFGMMREVIERRFSRLVKEHGTPEEPADTEVTDTFPAWPDVILIDGGQGQVGAV 570 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 + +L +L + + + I IAKG R AG E+FFV+ +A L RDP+LYFIQRLRDEAHR Sbjct: 571 RQILGELGISHLVNAIGIAKGVDREAGRERFFVEGKQAFTLPPRDPVLYFIQRLRDEAHR 630 Query: 540 FAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAI THR RRKK +PLDEI GIGP RKR LL FGT K +SR++ E L I+GIS+ Sbjct: 631 FAIGTHRARRKKEMVKNPLDEIAGIGPSRKRALLHHFGTAKAVSRAAVEDLMQIDGISEA 690 Query: 599 IACKIYNHFH 608 +A I++HF Sbjct: 691 MARTIHDHFR 700 >gi|306842035|ref|ZP_07474708.1| excinuclease ABC, C subunit [Brucella sp. BO2] gi|306287876|gb|EFM59296.1| excinuclease ABC, C subunit [Brucella sp. BO2] Length = 690 Score = 594 bits (1532), Expect = e-167, Method: Composition-based stats. Identities = 313/609 (51%), Positives = 419/609 (68%), Gaps = 5/609 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + G VLYVGKA NL+KR+ +Y H++RIT MI + + F VT Sbjct: 81 KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 140 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T H+ P ++KHR + + +G YFG Sbjct: 141 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 200 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TIN+LQR F LR+C DSVF RTRPCLL+QIKRCS PCT EIS E Y Sbjct: 201 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 260 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + ++K+ +A M A+ D+E A ++RDRLAALSH+Q+H Sbjct: 261 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 320 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ + CIQ FF GQN G +F K DS A++L FL QFY DKPCP Sbjct: 321 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 380 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +LLSE EE SL+ + + G+KV++TVP++GEK+++++ AL NA + ++L+ Sbjct: 381 KLVLLSETVEEQSLITEALSTRAGHKVQVTVPQRGEKKELVQHALTNAREALGRRLAETS 440 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ + F LP P+RIE+YDNSHIMG +AVG M+V G GFVKNQYRKFN+ Sbjct: 441 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 500 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 D+ DD MMR V+ERRFS+L+K + + +FP+WPDV+++DGG+GQ+ A + Sbjct: 501 DITPGDDFGMMREVIERRFSRLVKEHGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 559 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 +L ++ + + +T I IAKG R AG E+FF++ + L RDP+LYFIQRLRDEAHRF Sbjct: 560 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 619 Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI THR RRKK +PLDEI GIGP RKR LL FGT K +SR++ E L I+GIS+ + Sbjct: 620 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 679 Query: 600 ACKIYNHFH 608 A I++HF Sbjct: 680 ARAIHDHFR 688 >gi|307944216|ref|ZP_07659557.1| excinuclease ABC subunit C [Roseibium sp. TrichSKD4] gi|307772562|gb|EFO31782.1| excinuclease ABC subunit C [Roseibium sp. TrichSKD4] Length = 659 Score = 594 bits (1531), Expect = e-167, Method: Composition-based stats. Identities = 307/626 (49%), Positives = 409/626 (65%), Gaps = 19/626 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 +++P PGVY+M D G VLYVGKA NL+KR+ SY ++RI MI ++ F Sbjct: 34 QVKRLPNSPGVYRMFDENGEVLYVGKARNLKKRVTSYTRLQGQSNRIMRMILSTASMEFV 93 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT TE EALLLEAN+IKRL+PRFN+LLRDDKSFPYILI+ H+ A+ KHR + +G Y Sbjct: 94 VTQTEPEALLLEANLIKRLRPRFNVLLRDDKSFPYILISGDHEAAAIVKHRGARKRKGDY 153 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPFAS AV++TIN+LQ+ F +R+C+DS + +R+RPCL +QIKRC+GPCTG+IS+E Y Sbjct: 154 FGPFASAGAVDRTINALQKAFLIRNCSDSYYENRSRPCLQYQIKRCAGPCTGQISTEGYE 213 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 V EAK FLSG + +KE +AR M QA+ D+E A I RDRLAALSH+Q H Sbjct: 214 ALVAEAKAFLSGRSQAVKEDLARQMEQASETLDFERAAICRDRLAALSHVQAHQGINPQT 273 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 + D F++Y +C+Q FF GQN G +F K D IL FL QFY DKP Sbjct: 274 VDEADVFAIYQEGGQSCVQVFFFRTGQNWGNRAYFPKADKSMDTESILESFLAQFYDDKP 333 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P+ ILLS EE +LL + ++ G KV I VPK+GEK+++++ A NA + ++L+ Sbjct: 334 APKQILLSHSVEELTLLAEALSERMGRKVDIAVPKRGEKKELVDYASRNAKEALGRRLAE 393 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 S +LK + F L P+RIE+YDNSHIMG +AVG M+V G G K YRKFN+ Sbjct: 394 TSSQTKLLKGVAEAFDLETTPRRIEVYDNSHIMGTNAVGGMIVAGPEGLAKAHYRKFNIK 453 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEEN--------------LNFHPKKQEYSFPSWP 464 D+ DD MMR VL RRFS+L+K E + + P+WP Sbjct: 454 SEDLTPGDDYGMMREVLTRRFSRLLKEHEREAKPDPLPEPDTDQASDAEETPNTDVPAWP 513 Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524 D+V++DGG+GQL+AA+ L++L V + + ++ IAKGP R AG EKFF+ + +L RD Sbjct: 514 DLVLIDGGQGQLTAARETLEELGVTD-VPLVGIAKGPDRDAGREKFFITGRPSFMLPERD 572 Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISR 583 P+LYF+QRLRDEAHRFAI +HR RRKK +PLDEI GIGP RKR LL+ FGT K +S+ Sbjct: 573 PVLYFVQRLRDEAHRFAIGSHRARRKKDISKNPLDEIAGIGPTRKRALLRHFGTAKAVSK 632 Query: 584 SSPETLASIEGISKKIACKIYNHFHK 609 + E L ++ GIS+ +A +YN+FH+ Sbjct: 633 AGLEDLTAVPGISEAVAKLVYNYFHE 658 >gi|306843659|ref|ZP_07476259.1| excinuclease ABC, C subunit [Brucella sp. BO1] gi|306275969|gb|EFM57678.1| excinuclease ABC, C subunit [Brucella sp. BO1] Length = 690 Score = 594 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 313/609 (51%), Positives = 419/609 (68%), Gaps = 5/609 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + G VLYVGKA NL+KR+ +Y H++RIT MI + + F VT Sbjct: 81 KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 140 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T H+ P ++KHR + + +G YFG Sbjct: 141 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 200 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TIN+LQR F LR+C DSVF RTRPCLL+QIKRCS PCT EIS E Y Sbjct: 201 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDENYAGL 260 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + ++K+ +A M A+ D+E A ++RDRLAALSH+Q+H Sbjct: 261 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 320 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ + CIQ FF GQN G +F K DS A++L FL QFY DKPCP Sbjct: 321 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 380 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +LLSE EE SL+ + + G+KV++TVP++GEK+++++ AL NA + ++L+ Sbjct: 381 KLVLLSETVEEQSLITEALSTRAGHKVQVTVPQRGEKKELVQHALTNAREALGRRLAETS 440 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ + F LP P+RIE+YDNSHIMG +AVG M+V G GFVKNQYRKFN+ Sbjct: 441 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 500 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 D+ DD MMR V+ERRFS+L+K + + +FP+WPDV+++DGG+GQ+ A + Sbjct: 501 DITPGDDFGMMREVIERRFSRLVKEHGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 559 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 +L ++ + + +T I IAKG R AG E+FF++ + L RDP+LYFIQRLRDEAHRF Sbjct: 560 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 619 Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI THR RRKK +PLDEI GIGP RKR LL FGT K +SR++ E L I+GIS+ + Sbjct: 620 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 679 Query: 600 ACKIYNHFH 608 A I++HF Sbjct: 680 ARAIHDHFR 688 >gi|163759154|ref|ZP_02166240.1| excinuclease ABC subunit C [Hoeflea phototrophica DFL-43] gi|162283558|gb|EDQ33843.1| excinuclease ABC subunit C [Hoeflea phototrophica DFL-43] Length = 701 Score = 594 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 317/621 (51%), Positives = 421/621 (67%), Gaps = 14/621 (2%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +P PGVY+M++ AG VLYVGKA +L+KR+ +Y H++RIT MI+Q N+ F T Sbjct: 79 KHLPNQPGVYRMINEAGDVLYVGKARSLKKRVTNYAQGRGHSNRITRMIAQTANMEFVTT 138 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRLKPRFN+L+RDDKSFPYIL+T H+ PA++KHR + + +GSYFG Sbjct: 139 RTETEALLLEANLIKRLKPRFNVLMRDDKSFPYILVTADHEAPAIFKHRGARSRKGSYFG 198 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TIN+LQR F LR+C DSV+ RTRPCLL+QIKRC+GPCTGEI +E Y Sbjct: 199 PFASAGAVGRTINALQRAFLLRTCTDSVYESRTRPCLLYQIKRCAGPCTGEIDAEGYARL 258 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + +K +++R M A+ D+E A ++RDRL+ALSH+Q+H Sbjct: 259 VSEAKDFLSGRSQTVKAQLSRAMQDASEDLDFERAAVYRDRLSALSHVQSHQGINPQTVE 318 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++H+ +ACIQ FF GQN G +F K D +IL F+ QFY DKP P Sbjct: 319 EADVFAIHHDAGMACIQVFFFRTGQNWGNRAYFPKADPSLAPGEILGAFIGQFYDDKPTP 378 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 IL+S + E+ LL + + KV I+ P++GEKR++++Q L NA +H + L+ Sbjct: 379 RMILVSNDFEDRPLLAEALSVRMERKVTISEPQRGEKRELVDQVLSNAREAHGRHLAETA 438 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ + FALP P+RIE+YDNSHIMG +AVG M+V G GFVKNQYRKFN+ Sbjct: 439 SQARLLEGLAETFALPRPPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIKST 498 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEEN----------LNFHPKKQEYSFPSWPDVVILD 470 D+ DD MMR V++RRFS+LIK+ + P+WPD+V++D Sbjct: 499 DITPGDDFGMMREVMQRRFSRLIKDHGEEGPNQPDSADDADTDAAAQAGMPAWPDLVLID 558 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ+SA + +L++L + +IT I +AKG R AG E+FFV+ L RDP+LYF+ Sbjct: 559 GGKGQMSAVRKILEELGIAGKITAIGVAKGMDREAGRERFFVEGKPDFTLPPRDPVLYFV 618 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 QRLRDEAHRFAI THR RRKK +PLDEI GIGP RKR LL FGT K +SR+ + L Sbjct: 619 QRLRDEAHRFAIGTHRARRKKEMIKNPLDEIGGIGPSRKRALLHHFGTAKAVSRAGVDDL 678 Query: 590 ASIEGISKKIACKIYNHFHKN 610 +EGIS+ +A IYNHFH++ Sbjct: 679 IKVEGISEAVAELIYNHFHED 699 >gi|254713824|ref|ZP_05175635.1| excinuclease ABC subunit C [Brucella ceti M644/93/1] gi|254717118|ref|ZP_05178929.1| excinuclease ABC subunit C [Brucella ceti M13/05/1] gi|261218933|ref|ZP_05933214.1| excinuclease ABC subunit C [Brucella ceti M13/05/1] gi|261321568|ref|ZP_05960765.1| UvrABC system protein C [Brucella ceti M644/93/1] gi|260924022|gb|EEX90590.1| excinuclease ABC subunit C [Brucella ceti M13/05/1] gi|261294258|gb|EEX97754.1| UvrABC system protein C [Brucella ceti M644/93/1] Length = 690 Score = 594 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 312/609 (51%), Positives = 419/609 (68%), Gaps = 5/609 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + G VLYVGKA NL+KR+ +Y H++RIT MI + + F VT Sbjct: 81 KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 140 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T H+ P ++KHR + + +G YFG Sbjct: 141 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 200 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TIN+LQR F LR+C DSVF RTRPCLL+QIKRCS PCT EIS E Y Sbjct: 201 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 260 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + ++K+ +A M A+ D+E A ++RDRLAALSH+Q+H Sbjct: 261 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 320 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ + CIQ FF GQN G +F K DS A++L FL QFY DKPCP Sbjct: 321 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 380 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +LLSE EE SL+ + + G+KV+++VP++GEK+++++ AL NA + ++L+ Sbjct: 381 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 440 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ + F LP P+RIE+YDNSHIMG +AVG M+V G GFVKNQYRKFN+ Sbjct: 441 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGSEGFVKNQYRKFNIRST 500 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 D+ DD MMR V+ERRFS+L+K + + +FP+WPDV+++DGG+GQ+ A + Sbjct: 501 DITPGDDFGMMREVIERRFSRLVKEPGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 559 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 +L ++ + + +T I IAKG R AG E+FF++ + L RDP+LYFIQRLRDEAHRF Sbjct: 560 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 619 Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI THR RRKK +PLDEI GIGP RKR LL FGT K +SR++ E L I+GIS+ + Sbjct: 620 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 679 Query: 600 ACKIYNHFH 608 A I++HF Sbjct: 680 ARAIHDHFR 688 >gi|254701482|ref|ZP_05163310.1| excinuclease ABC subunit C [Brucella suis bv. 5 str. 513] gi|261752025|ref|ZP_05995734.1| UvrABC system protein C [Brucella suis bv. 5 str. 513] gi|261741778|gb|EEY29704.1| UvrABC system protein C [Brucella suis bv. 5 str. 513] Length = 690 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 312/609 (51%), Positives = 419/609 (68%), Gaps = 5/609 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + G VLYVGKA NL+KR+ +Y H++RIT MI + + F VT Sbjct: 81 KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 140 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T H+ P ++KHR + + +G YFG Sbjct: 141 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 200 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TIN+LQR F LR+C DSVF RTRPCLL+QIKRCS PCT EIS E Y Sbjct: 201 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 260 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + ++K+ +A M A+ D+E A ++RDRLAALSH+Q+H Sbjct: 261 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 320 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ + CIQ FF GQN G +F K DS A++L FL QFY DKPCP Sbjct: 321 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 380 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +LLSE EE SL+ + + G+KV+++VP++GEK+++++ AL NA + ++L+ Sbjct: 381 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 440 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ + F LP P+RIE+YDNSHIMG +AVG M+V G GFVKNQYRKFN+ Sbjct: 441 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 500 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 D+ DD MMR V+ERRFS+L+K + + +FP+WPDV+++DGG+GQ+ A + Sbjct: 501 DITPGDDFGMMREVIERRFSRLVKEHGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 559 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 +L ++ + + +T I IAKG R AG E+FF++ + L RDP+LYFIQRLRDEAHRF Sbjct: 560 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 619 Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI THR RRKK +PLDEI GIGP RKR LL FGT K +SR++ E L I+GIS+ + Sbjct: 620 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 679 Query: 600 ACKIYNHFH 608 A I++HF Sbjct: 680 ARAIHDHFR 688 >gi|153009916|ref|YP_001371131.1| excinuclease ABC subunit C [Ochrobactrum anthropi ATCC 49188] gi|151561804|gb|ABS15302.1| excinuclease ABC, C subunit [Ochrobactrum anthropi ATCC 49188] Length = 691 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 316/610 (51%), Positives = 416/610 (68%), Gaps = 5/610 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + G VLYVGKA NL+KR+ +Y H++RIT MI + + F VT Sbjct: 80 KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 139 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T H+ P ++KHR + + +G YFG Sbjct: 140 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGDHRAPGIFKHRGARSRKGDYFG 199 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TIN+LQR F LR+C DSVF RTRPCLLFQIKRCSGPCT EIS E Y E Sbjct: 200 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLFQIKRCSGPCTHEISDEDYAEL 259 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V+EAK FLSG + ++K+ +A M A+ D+E A ++RDRLAALSH+Q+H Sbjct: 260 VNEAKAFLSGKSQSVKDHLATAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 319 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ + CIQ FF GQN G +F K DS A++L FL QFY DKPCP Sbjct: 320 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 379 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 +LLSE EE SL+ + + G+KV++ VP++GEK+ +++ AL NA + ++L+ Sbjct: 380 RLVLLSETVEEQSLIAEALSTRAGHKVQVNVPQRGEKKDLVDHALTNAREALGRRLAETS 439 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ + F L P+RIE+YDNSHIMG +AVG M+V G GFVKNQYRKFN+ Sbjct: 440 SQARLLQGMAETFGLSQPPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 499 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQ-EYSFPSWPDVVILDGGKGQLSAA 479 D+ DD MMR V+ERRFS+L+K + +FP+WPDV+++DGG+GQ+ A Sbjct: 500 DITPGDDFGMMREVIERRFSRLVKEHGTPEEPADAEVTDTFPAWPDVILIDGGQGQVGAV 559 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 + +L +L + + + I IAKG R AG E+FFV+ +A L RDP+LYFIQRLRDEAHR Sbjct: 560 RQILGELGISHLVNAIGIAKGVDREAGRERFFVEGKQAFTLPPRDPVLYFIQRLRDEAHR 619 Query: 540 FAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAI THR RRKK +PLDEI GIGP RKR LL FGT K +SR++ L IEGIS+ Sbjct: 620 FAIGTHRARRKKEMVKNPLDEIAGIGPSRKRALLHHFGTAKAVSRAAVADLMQIEGISEA 679 Query: 599 IACKIYNHFH 608 +A I++HF Sbjct: 680 MAKTIHDHFR 689 >gi|254704029|ref|ZP_05165857.1| excinuclease ABC subunit C [Brucella suis bv. 3 str. 686] gi|261754683|ref|ZP_05998392.1| UvrABC system protein C [Brucella suis bv. 3 str. 686] gi|261744436|gb|EEY32362.1| UvrABC system protein C [Brucella suis bv. 3 str. 686] Length = 690 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 312/609 (51%), Positives = 419/609 (68%), Gaps = 5/609 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + G VLYVGKA NL+KR+ +Y H++RIT MI + + F VT Sbjct: 81 KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 140 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T H+ P ++KHR + + +G YFG Sbjct: 141 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 200 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TIN+LQR F LR+C DSVF RTRPCLL+QIKRCS PCT EIS E Y Sbjct: 201 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 260 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + ++K+ +A M A+ D+E A ++RDRLAALSH+Q+H Sbjct: 261 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 320 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ + CIQ FF GQN G +F K DS A++L FL QFY DKPCP Sbjct: 321 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 380 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +LLSE EE SL+ + + G+KV+++VP++GEK+++++ AL NA + ++L+ Sbjct: 381 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 440 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ + F LP P+RIE+YDNSHIMG +AVG M+V G GFVKNQYRKFN+ Sbjct: 441 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 500 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 D+ DD MMR V+ERRFS+L+K + + +FP+WPDV+++DGG+GQ+ A + Sbjct: 501 DITPGDDFGMMREVIERRFSRLVKEHGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 559 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 +L ++ + + +T I IAKG R AG E+FF++ + L RDP+LYFIQRLRDEAHRF Sbjct: 560 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 619 Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI THR RRKK +PLDEI GIGP RKR LL FGT K +SR++ E L I+GIS+ + Sbjct: 620 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 679 Query: 600 ACKIYNHFH 608 A I++HF Sbjct: 680 ARAIHDHFR 688 >gi|163842969|ref|YP_001627373.1| excinuclease ABC subunit C [Brucella suis ATCC 23445] gi|163673692|gb|ABY37803.1| excinuclease ABC, C subunit [Brucella suis ATCC 23445] Length = 690 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 312/609 (51%), Positives = 419/609 (68%), Gaps = 5/609 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + G VLYVGKA NL+KR+ +Y H++RIT MI + + F VT Sbjct: 81 KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 140 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T H+ P ++KHR + + +G YFG Sbjct: 141 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 200 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TIN+LQR F LR+C DSVF RTRPCLL+QIKRCS PCT EIS E Y Sbjct: 201 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 260 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + ++K+ +A M A+ D+E A ++RDRLAALSH+Q+H Sbjct: 261 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 320 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ + CIQ FF GQN G +F K DS A++L FL QFY DKPCP Sbjct: 321 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 380 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +LLSE EE SL+ + + G+KV+++VP++GEK+++++ AL NA + ++L+ Sbjct: 381 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 440 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ + F LP P+RIE+YDNSHIMG +AVG M+V G GFVKNQYRKFN+ Sbjct: 441 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 500 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 D+ DD MMR V+ERRFS+L+K + + +FP+WPDV+++DGG+GQ+ A + Sbjct: 501 DITPGDDFGMMREVIERRFSRLVKEHGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 559 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 +L ++ + + +T I IAKG R AG E+FF++ + L RDP+LYFIQRLRDEAHRF Sbjct: 560 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 619 Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI THR RRKK +PLDEI GIGP RKR LL FGT K +SR++ E L I+GIS+ + Sbjct: 620 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 679 Query: 600 ACKIYNHFH 608 A I++HF Sbjct: 680 ARAIHDHFR 688 >gi|254718836|ref|ZP_05180647.1| excinuclease ABC subunit C [Brucella sp. 83/13] gi|265983820|ref|ZP_06096555.1| UvrABC system protein C [Brucella sp. 83/13] gi|306838757|ref|ZP_07471591.1| excinuclease ABC, C subunit [Brucella sp. NF 2653] gi|264662412|gb|EEZ32673.1| UvrABC system protein C [Brucella sp. 83/13] gi|306406159|gb|EFM62404.1| excinuclease ABC, C subunit [Brucella sp. NF 2653] Length = 690 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 312/609 (51%), Positives = 419/609 (68%), Gaps = 5/609 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + G VLYVGKA NL+KR+ +Y H++RIT MI + + F +T Sbjct: 81 KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVIT 140 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T H+ P ++KHR + + +G YFG Sbjct: 141 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 200 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TIN+LQR F LR+C DSVF RTRPCLL+QIKRCS PCT EIS E Y Sbjct: 201 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 260 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + ++K+ +A M A+ D+E A ++RDRLAALSH+Q+H Sbjct: 261 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 320 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ + CIQ FF GQN G +F K DS A++L FL QFY DKPCP Sbjct: 321 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 380 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +LLSE EE SL+ + + G+KV++TVP++GEK+++++ AL NA + ++L+ Sbjct: 381 KLVLLSETVEEQSLITEALSTRAGHKVQVTVPQRGEKKELVQHALTNAREALGRRLAETS 440 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ + F LP P+RIE+YDNSHIMG +AVG M+V G GFVKNQYRKFN+ Sbjct: 441 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 500 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 D+ DD MMR V+ERRFS+L+K + + +FP+WPDV+++DGG+GQ+ A + Sbjct: 501 DITPGDDFGMMREVIERRFSRLVKEHGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 559 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 +L ++ + + +T I IAKG R AG E+FF++ + L RDP+LYFIQRLRDEAHRF Sbjct: 560 QILGEMGIGDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 619 Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI THR RRKK +PLDEI GIGP RKR LL FGT K +SR++ E L I+GIS+ + Sbjct: 620 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 679 Query: 600 ACKIYNHFH 608 A I++HF Sbjct: 680 ARAIHDHFR 688 >gi|86357117|ref|YP_469009.1| excinuclease ABC subunit C [Rhizobium etli CFN 42] gi|119367821|sp|Q2KA54|UVRC_RHIEC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|86281219|gb|ABC90282.1| excinuclease ABC subunit C protein [Rhizobium etli CFN 42] Length = 679 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 324/618 (52%), Positives = 429/618 (69%), Gaps = 9/618 (1%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+ML+ G VLYVGKA +L+KR+ +Y H++RI M+ Q N+ F T Sbjct: 61 KRLPNSPGVYRMLNAEGDVLYVGKARSLKKRVGNYAVGRVHSNRIAQMVRQTANMEFVTT 120 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+LLRDDKSFPYILIT H+ PA++KHR + +G YFG Sbjct: 121 RTETEALLLEANLIKRLRPRFNVLLRDDKSFPYILITGDHRAPAIFKHRGARARKGDYFG 180 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TINSLQR F +R+C DSVF RTRPCLL+QIKRCSGPCT E+S E Y E Sbjct: 181 PFASAGAVGRTINSLQRAFLIRTCTDSVFETRTRPCLLYQIKRCSGPCTHEVSDEGYAEL 240 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + +K +A MNQA D+E A I+RDRLAALSH+Q+H + Sbjct: 241 VQEAKDFLSGKSQKVKSHMAEAMNQAAEDLDFERAAIYRDRLAALSHVQSHQGINPAGVD 300 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++H ++CIQ FF GQN G +F K D + ++A++L+ FL QFY DKP P Sbjct: 301 EADVFAIHHEGGVSCIQVFFFRTGQNWGNRAYFPKADPQLSSAEVLNAFLAQFYDDKPVP 360 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + I+LSE AEE LL + ++ G+KV I VP++GEKR +++ + NA +H +KL+ Sbjct: 361 KQIMLSETAEELELLAAALSEKAGHKVSILVPRRGEKRDLVDHVVGNAREAHGRKLAETA 420 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ F + F L + P+RIEIYDNSHIMG +AVG MVV G GFVKNQYRKFN+ Sbjct: 421 SQSRLLEGFKETFGLAYAPQRIEIYDNSHIMGTNAVGGMVVAGPEGFVKNQYRKFNIKST 480 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS-----FPSWPDVVILDGGKGQ 475 D+ DD MM+ V+ RRFS+LIK E + + FP+WPDV+++DGG+GQ Sbjct: 481 DITPGDDFGMMKEVMTRRFSRLIKEEGIPDRTAQAAAADAADMPFPAWPDVILIDGGQGQ 540 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 ++A + +L +L + + +T I IAKG R AG E+FF E+ L RDP+LYFIQR+RD Sbjct: 541 MTAVRAILAELGITDSVTAIGIAKGVDRDAGRERFFAPGRESFTLPPRDPVLYFIQRMRD 600 Query: 536 EAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFAI +HR RRKK +PLDEI GIGP RKR LLQ FGT K +SR++ L ++EG Sbjct: 601 EAHRFAIGSHRVRRKKEMVKNPLDEIGGIGPSRKRALLQHFGTAKAVSRAALSDLMAVEG 660 Query: 595 ISKKIACKIYNHFHKNTS 612 IS+ +A ++YNHFH++ + Sbjct: 661 ISEAVAKQVYNHFHEDAA 678 >gi|148560017|ref|YP_001258680.1| excinuclease ABC subunit C [Brucella ovis ATCC 25840] gi|148371274|gb|ABQ61253.1| excinuclease ABC, C subunit [Brucella ovis ATCC 25840] Length = 690 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 312/609 (51%), Positives = 419/609 (68%), Gaps = 5/609 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + G VLYVGKA NL+KR+ +Y H++RIT MI + + F VT Sbjct: 81 KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 140 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T H+ P ++KHR + + +G YFG Sbjct: 141 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 200 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TIN+LQR F LR+C DSVF RTRPCLL+QIKRCS PCT EIS E Y Sbjct: 201 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 260 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + ++K+ +A M A+ D+E A ++RDRLAALSH+Q+H Sbjct: 261 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 320 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ + CIQ FF GQN G +F K DS A++L FL QFY DKPCP Sbjct: 321 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 380 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +LLSE EE SL+ + + G+KV+++VP++GEK+++++ AL NA + ++L+ Sbjct: 381 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 440 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ + F LP P+RIE+YDNSHIMG +AVG M+V G GFVKNQYRKFN+ Sbjct: 441 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 500 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 D+ DD MMR V+ERRFS+L+K + + +FP+WPDV+++DGG+GQ+ A + Sbjct: 501 DITPGDDFGMMREVIERRFSRLVKEHGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 559 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 +L ++ + + +T I IAKG R AG E+FF++ + L RDP+LYFIQRLRDEAHRF Sbjct: 560 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 619 Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI THR RRKK +PLDEI GIGP RKR LL FGT K +SR++ E L I+GIS+ + Sbjct: 620 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLVQIDGISEAM 679 Query: 600 ACKIYNHFH 608 A I++HF Sbjct: 680 ARAIHDHFR 688 >gi|256254719|ref|ZP_05460255.1| excinuclease ABC subunit C [Brucella ceti B1/94] gi|261221899|ref|ZP_05936180.1| UvrABC system protein C [Brucella ceti B1/94] gi|260920483|gb|EEX87136.1| UvrABC system protein C [Brucella ceti B1/94] Length = 690 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 314/609 (51%), Positives = 420/609 (68%), Gaps = 5/609 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + G VLYVGKA NL+KR+ +Y H++RIT MI + + F VT Sbjct: 81 KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 140 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T H+ P ++KHR + + +G YFG Sbjct: 141 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 200 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFASV AV +TIN+LQR F LR+C DSVF RTRPCLL+QIKRCS PCT EIS E Y Sbjct: 201 PFASVGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 260 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + ++K+ +A M A+ D+E A ++RDRLAALSH+Q+H Sbjct: 261 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 320 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ + CIQ FF GQN G +F K DS A++L FL QFY DKPCP Sbjct: 321 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 380 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +LLSE EE SL+ + + G+KV+++VP++GEK+++++ AL NA + ++L+ Sbjct: 381 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 440 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ + F LP P+RIE+YDNSHIMG +AVG M+V G GFVKNQYRKFN+ Sbjct: 441 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 500 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 D+ DD MMR V+ERRFS+L+K + + +FP+WPDV+++DGG+GQ+ A + Sbjct: 501 DITPGDDFGMMREVIERRFSRLVKEPGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 559 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 +L K+ + + +T I IAKG R AG E+FF++ + L RDP+LYFIQRLRDEAHRF Sbjct: 560 QILGKMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 619 Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI THR RRKK +PLDEI GIGP RKR LL FGT K +SR++ E L I+GIS+ + Sbjct: 620 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 679 Query: 600 ACKIYNHFH 608 A I++HF Sbjct: 680 ARAIHDHFR 688 >gi|260168450|ref|ZP_05755261.1| excinuclease ABC subunit C [Brucella sp. F5/99] gi|261757912|ref|ZP_06001621.1| excinuclease ABC subunit C [Brucella sp. F5/99] gi|261737896|gb|EEY25892.1| excinuclease ABC subunit C [Brucella sp. F5/99] Length = 690 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 313/609 (51%), Positives = 419/609 (68%), Gaps = 5/609 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + G VLYVGKA NL+KR+ +Y H++RIT MI + + F VT Sbjct: 81 KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 140 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T H+ P ++KHR + + +G YFG Sbjct: 141 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 200 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TIN+LQR F LR+C DSVF RTRPCLL+QIKRCS PCT EIS E Y Sbjct: 201 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 260 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + ++K+ +A M A+ D+E A ++RDRLAALSH+Q+H Sbjct: 261 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 320 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ + CIQ FF GQN G +F K DS A++L FL QFY DKPCP Sbjct: 321 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 380 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +LLSE EE SL+ + + G+KV+++VP++GEK+++++ AL NA + ++L+ Sbjct: 381 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 440 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ + F LP P+RIE+YDNSHIMG +AVG M+V G GFVKNQYRKFN+ Sbjct: 441 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 500 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 D+ DD MMR V+ERRFS+L+K + + +FP+WPDV+++DGG+GQ+ A + Sbjct: 501 DITPGDDFGMMREVIERRFSRLVKEPGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 559 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 +L K+ + + +T I IAKG R AG E+FF++ + L RDP+LYFIQRLRDEAHRF Sbjct: 560 QILGKMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 619 Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI THR RRKK +PLDEI GIGP RKR LL FGT K +SR++ E L I+GIS+ + Sbjct: 620 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 679 Query: 600 ACKIYNHFH 608 A I++HF Sbjct: 680 ARAIHDHFR 688 >gi|188582246|ref|YP_001925691.1| excinuclease ABC, C subunit [Methylobacterium populi BJ001] gi|179345744|gb|ACB81156.1| excinuclease ABC, C subunit [Methylobacterium populi BJ001] Length = 700 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 280/632 (44%), Positives = 381/632 (60%), Gaps = 26/632 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+M D G VLYVGKA NL+ R+ SY H++RI MI+Q + F T Sbjct: 70 TLPTSPGVYRMFDHKGDVLYVGKAKNLKARVGSYARGQAHSNRIARMIAQTAAMEFVTTA 129 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLEAN+IK+LKPRFN+L+RDDKSFPYIL+T P + KHR + +G+Y+GP Sbjct: 130 TETEALLLEANLIKQLKPRFNVLMRDDKSFPYILLTSDGPAPQIVKHRGARRRKGNYYGP 189 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 FA+V AV +T+N+LQR F LR+C+DS + +RTRPCLL+QIKRCSGPCTGEISS+ Y+ Sbjct: 190 FANVWAVNRTVNALQRAFLLRTCSDSYYENRTRPCLLYQIKRCSGPCTGEISSDDYVALA 249 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241 A+ FLSG ++ +K+++ M A+ ++E A RDR+AALS IQ Sbjct: 250 DNARAFLSGKSNAVKDRMREEMQAASENLEFERAARFRDRIAALSAIQGTQGVNTQGVEE 309 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D F+L CI+ FF QN G +F K D + ++L+ F+ QFY DKP P Sbjct: 310 ADVFALDEQAGQFCIEVFFFRNFQNWGNRAYFPKADRSMSADEVLASFISQFYDDKPAPR 369 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 +L+S E+ L+ + + ++V++ P++GE++ +++ A NA + ++L+ S Sbjct: 370 LVLVSHTIEDAELMAAALSSRVEHRVEVHQPQRGERKNLVDYAQRNAKEALGRRLADTAS 429 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 +L + F L P+RIE+YDNSHI G +AVG M+V G GF+K YR FN+ + Sbjct: 430 QGKLLAALGQSFGLDKPPRRIEVYDNSHISGTAAVGGMIVAGPTGFMKTHYRTFNIKSEE 489 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPK---------------------KQEYSF 460 + DD MMR VL RRF +L K +F Sbjct: 490 LSPGDDFGMMREVLTRRFKRLAKEAPRTPREGDVGEPQAAAEGQAVPAATEALPDDPDAF 549 Query: 461 PSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVL 520 P+WPD+V++DGG GQL AA+ L ++ V + + ++ IAKG R AG E FFV L Sbjct: 550 PAWPDLVLIDGGAGQLEAARASLAEIGVID-VPLVGIAKGRDRDAGRETFFVPGRTPFKL 608 Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVK 579 RDP LYF+QRLRDEAHRFAI THR RRK+ +PLDEI GIGP RKR LL FGTVK Sbjct: 609 PPRDPALYFVQRLRDEAHRFAIGTHRARRKREMTKNPLDEIAGIGPTRKRALLHHFGTVK 668 Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I R++ E LA G++ A +Y+ FH N Sbjct: 669 AIERAALEDLAKAPGVNAATARAVYDFFHANA 700 >gi|163852296|ref|YP_001640339.1| excinuclease ABC, C subunit [Methylobacterium extorquens PA1] gi|163663901|gb|ABY31268.1| excinuclease ABC, C subunit [Methylobacterium extorquens PA1] Length = 682 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 276/629 (43%), Positives = 382/629 (60%), Gaps = 23/629 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+M D G VLYVGKA NL+ R+ SY H++RI MI+Q + F T Sbjct: 55 TLPNSPGVYRMFDAKGDVLYVGKAKNLKARVGSYARGQAHSNRIARMIAQTAAMEFVTTA 114 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLEAN+IK+LKPRFN+L+RDDKSFPYIL+T P + KHR + +G+Y+GP Sbjct: 115 TETEALLLEANLIKQLKPRFNVLMRDDKSFPYILLTSDGPAPQIVKHRGARRRKGNYYGP 174 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 FA+V AV +T+N+LQR F +R+C+DS + +RTRPCLL+QIKRCSGPCTGEI+ E Y Sbjct: 175 FANVWAVNRTVNALQRAFLMRTCSDSYYENRTRPCLLYQIKRCSGPCTGEIALEDYSALA 234 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241 A+ FLSG ++ +K+++ M +A+ ++E A RDR+AALS IQ Sbjct: 235 DSARAFLSGKSNAVKDRMREEMQRASEALEFERAARFRDRIAALSAIQGVQGVNTQGVEE 294 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D F++ CI+ FF QN G +F K D + ++L+ F+ QFY DKP P+ Sbjct: 295 ADVFAIDEQAGQFCIEVFFFRNFQNWGNRAYFPKADRSMSADEVLASFISQFYDDKPAPK 354 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 +L+S E+ L+ + + ++V++ P++GE++ +++ A NA + ++L+ S Sbjct: 355 LVLVSHTIEDAELVAAALSSRVEHRVEVHQPQRGERKNLVDYAQRNAKEALGRRLADTAS 414 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 +L + F L P+R+E+YDNSHI G +AVG M+V G GF+K YR FN+ + Sbjct: 415 QGKLLTALGQAFGLDKPPRRVEVYDNSHISGTAAVGGMIVAGPTGFMKTHYRTFNIKSEE 474 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPK------------------KQEYSFPSW 463 + DD MMR VL RRF +L K + +FP+W Sbjct: 475 LSPGDDFGMMREVLTRRFKRLAKEAPRTPREGEAGEPQTADQAVPAVAEVQDDPDAFPAW 534 Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMR 523 PD+V++DGG GQL AA+ L ++ V + ++ IAKG R AG E FFV L R Sbjct: 535 PDLVLIDGGAGQLEAARASLAEIGVTG-VPLVGIAKGRDRDAGRETFFVPGRSPFKLPPR 593 Query: 524 DPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMIS 582 DP+LYF+QRLRDEAHRFAI THR RRK+ +PLDEI GIGP RKR LL FGTVK I Sbjct: 594 DPVLYFVQRLRDEAHRFAIGTHRARRKREMTKNPLDEIAGIGPTRKRALLHHFGTVKAIE 653 Query: 583 RSSPETLASIEGISKKIACKIYNHFHKNT 611 R++ E LA G++ A +Y+ FH N Sbjct: 654 RAALEDLAKAPGVNAATARAVYDFFHANA 682 >gi|161618668|ref|YP_001592555.1| excinuclease ABC subunit C [Brucella canis ATCC 23365] gi|260566723|ref|ZP_05837193.1| excinuclease ABC subunit C [Brucella suis bv. 4 str. 40] gi|161335479|gb|ABX61784.1| excinuclease ABC, C subunit [Brucella canis ATCC 23365] gi|260156241|gb|EEW91321.1| excinuclease ABC subunit C [Brucella suis bv. 4 str. 40] Length = 690 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 311/609 (51%), Positives = 418/609 (68%), Gaps = 5/609 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + G VLYVGKA NL+KR+ +Y H++RIT MI + + F VT Sbjct: 81 KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 140 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T H+ P ++KHR + + +G YFG Sbjct: 141 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 200 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TIN+LQR F LR+C DSVF RTRPCLL+QIKRCS PCT EIS E Y Sbjct: 201 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 260 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + ++K+ +A M A+ D+E A ++RDRLAALSH+Q+H Sbjct: 261 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 320 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ + CIQ FF GQN G +F K DS A++L FL QFY DKPCP Sbjct: 321 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 380 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +LLSE EE L+ + + G+KV+++VP++GEK+++++ AL NA + ++L+ Sbjct: 381 KLVLLSETVEEQFLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 440 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ + F LP P+RIE+YDNSHIMG +AVG M+V G GFVKNQYRKFN+ Sbjct: 441 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 500 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 D+ DD MMR V+ERRFS+L+K + + +FP+WPDV+++DGG+GQ+ A + Sbjct: 501 DITPGDDFGMMREVIERRFSRLVKEHGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 559 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 +L ++ + + +T I IAKG R AG E+FF++ + L RDP+LYFIQRLRDEAHRF Sbjct: 560 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 619 Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI THR RRKK +PLDEI GIGP RKR LL FGT K +SR++ E L I+GIS+ + Sbjct: 620 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 679 Query: 600 ACKIYNHFH 608 A I++HF Sbjct: 680 ARAIHDHFR 688 >gi|218531054|ref|YP_002421870.1| excinuclease ABC, C subunit [Methylobacterium chloromethanicum CM4] gi|218523357|gb|ACK83942.1| excinuclease ABC, C subunit [Methylobacterium chloromethanicum CM4] Length = 682 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 276/629 (43%), Positives = 381/629 (60%), Gaps = 23/629 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+M D G VLYVGKA NL+ R+ SY H++RI MI+Q + F T Sbjct: 55 TLPNSPGVYRMFDAKGDVLYVGKAKNLKARVGSYARGQAHSNRIARMIAQTAAMEFVTTA 114 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLEAN+IK+LKPRFN+L+RDDKSFPYIL+T P + KHR + +G+Y+GP Sbjct: 115 TETEALLLEANLIKQLKPRFNVLMRDDKSFPYILLTSDGPAPQIVKHRGARRRKGNYYGP 174 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 FA+V AV +T+N+LQR F +R+C+DS + +RTRPCLL+QIKRCSGPCTGEI+ E Y Sbjct: 175 FANVWAVNRTVNALQRAFLMRTCSDSYYENRTRPCLLYQIKRCSGPCTGEIALEDYSALA 234 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241 A+ FLSG ++ +K+++ M +A+ ++E A RDR+AALS IQ Sbjct: 235 DSARAFLSGKSNAVKDRMREEMQRASEALEFERAARFRDRIAALSAIQGVQGVNTQGVEE 294 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D F++ CI+ FF QN G +F K D + ++L+ F+ QFY DKP P+ Sbjct: 295 ADVFAIDEQAGQFCIEVFFFRNFQNWGNRAYFPKADRSMSADEVLASFISQFYDDKPAPK 354 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 +L+S E+ L+ + + ++V++ P++GE++ +++ A NA + ++L+ S Sbjct: 355 LVLVSHTIEDAELVAAALSSRVEHRVEVHQPQRGERKNLVDYAQRNAKEALGRRLADTAS 414 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 +L + F L P+R+E+YDNSHI G +AVG M+V G GF+K YR FN+ + Sbjct: 415 QGKLLTALGQAFGLDKPPRRVEVYDNSHISGTAAVGGMIVAGPTGFMKTHYRTFNIKSEE 474 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPK------------------KQEYSFPSW 463 + DD MMR VL RRF +L K +FP+W Sbjct: 475 LSPGDDFGMMREVLTRRFKRLAKEAPRTPREGDAGEPQAPEKAVPTVAEVQDDPDAFPAW 534 Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMR 523 PD+V++DGG GQL AA+ L ++ V + ++ IAKG R AG E FFV L R Sbjct: 535 PDLVLIDGGAGQLEAARASLAEIGVTG-VPLVGIAKGRDRDAGRETFFVPGRSPFKLPPR 593 Query: 524 DPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMIS 582 DP+LYF+QRLRDEAHRFAI THR RRK+ +PLDEI GIGP RKR LL FGTVK I Sbjct: 594 DPVLYFVQRLRDEAHRFAIGTHRARRKREMTKNPLDEIAGIGPTRKRALLHHFGTVKAIE 653 Query: 583 RSSPETLASIEGISKKIACKIYNHFHKNT 611 R++ E LA G++ A +Y+ FH N Sbjct: 654 RAALEDLAKAPGVNAATARAVYDFFHANA 682 >gi|254562042|ref|YP_003069137.1| DNA exisiton repair enzyme together with UvrAB [Methylobacterium extorquens DM4] gi|254269320|emb|CAX25286.1| DNA exisiton repair enzyme together with UvrAB [Methylobacterium extorquens DM4] Length = 682 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 277/629 (44%), Positives = 383/629 (60%), Gaps = 23/629 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+M D G VLYVGKA NL+ R+ SY H++RI MI+Q + F T Sbjct: 55 TLPNSPGVYRMFDAKGDVLYVGKAKNLKARVGSYARGQAHSNRIARMIAQTAAMEFVTTA 114 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLEAN+IK+LKPRFN+L+RDDKSFPYIL+T P + KHR + +G+Y+GP Sbjct: 115 TETEALLLEANLIKQLKPRFNVLMRDDKSFPYILLTSDGPAPQIVKHRGARRRKGNYYGP 174 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 FA+V AV +T+N+LQR F +R+C+DS + +RTRPCLL+QIKRCSGPCTGEI+ E Y Sbjct: 175 FANVWAVNRTVNALQRAFLMRTCSDSYYENRTRPCLLYQIKRCSGPCTGEIALEDYSALA 234 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241 A+ FLSG ++ +K+++ M +A+ ++E A RDR+AALS IQ Sbjct: 235 DSARAFLSGKSNAVKDRMREEMQRASEALEFERAARFRDRIAALSAIQGVQGVNTQGVEE 294 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D F++ CI+ FF QN G +F K D + ++L+ F+ QFY DKP P+ Sbjct: 295 ADVFAIDEQAGQFCIEVFFFRNFQNWGNRAYFPKADRSMSADEVLASFISQFYDDKPAPK 354 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 +L+S E+ L+ + + ++V++ P++GE++ +++ A NA + ++L+ S Sbjct: 355 LVLVSHTIEDAELVAAALSSRVEHRVEVHQPQRGERKNLVDYAQRNAKEALGRRLADTAS 414 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 +L + F L P+R+E+YDNSHI G +AVG M+V G GF+K YR FN+ + Sbjct: 415 QGKLLTALGQAFGLDKPPRRVEVYDNSHISGTAAVGGMIVAGPTGFMKTHYRTFNIKSEE 474 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPK------------------KQEYSFPSW 463 + DD MMR VL RRF +L K + + +FP+W Sbjct: 475 LSPGDDFGMMREVLTRRFKRLAKEAPRIPREGEAGEPQAPEKAVPAVAEVQDDPDAFPAW 534 Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMR 523 PD+V++DGG GQL AA+ L ++ V + +I IAKG R AG E FFV L R Sbjct: 535 PDLVLIDGGAGQLEAARASLAEIGVTG-VPLIGIAKGRDRDAGRETFFVPGRSPFKLPPR 593 Query: 524 DPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMIS 582 DP+LYF+QRLRDEAHRFAI THR RRK+ +PLDEI GIGP RKR LL FGTVK I Sbjct: 594 DPVLYFVQRLRDEAHRFAIGTHRARRKREMTKNPLDEIAGIGPTRKRALLHHFGTVKAIE 653 Query: 583 RSSPETLASIEGISKKIACKIYNHFHKNT 611 R++ E LA G++ A +Y+ FH N Sbjct: 654 RAALEDLAKAPGVNAATARAVYDFFHANA 682 >gi|240139632|ref|YP_002964108.1| DNA exisiton repair enzyme together with UvrAB [Methylobacterium extorquens AM1] gi|240009605|gb|ACS40831.1| DNA exisiton repair enzyme together with UvrAB [Methylobacterium extorquens AM1] Length = 682 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 276/629 (43%), Positives = 381/629 (60%), Gaps = 23/629 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+M D G VLYVGKA NL+ R+ SY H++RI MI+Q + F T Sbjct: 55 TLPNSPGVYRMFDSKGDVLYVGKAKNLKARVGSYARGQAHSNRIARMIAQTAAMEFVTTA 114 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLEAN+IK+LKPRFN+L+RDDKSFPYIL+T P + KHR + +G+Y+GP Sbjct: 115 TETEALLLEANLIKQLKPRFNVLMRDDKSFPYILLTSDGPAPQIVKHRGARRRKGNYYGP 174 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 FA+V AV +T+N+LQR F +R+C+DS + +RTRPCLL+QIKRCSGPCTGEI+ E Y Sbjct: 175 FANVWAVNRTVNALQRAFLMRTCSDSYYENRTRPCLLYQIKRCSGPCTGEIALEDYSALA 234 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241 A+ FLSG ++ +K+++ M +A+ ++E A RDR+AALS IQ Sbjct: 235 DSARAFLSGKSNAVKDRMREEMQRASEALEFERAARFRDRIAALSAIQGVQGVNTQGVEE 294 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D F++ CI+ FF QN G +F K D + ++L+ F+ QFY DKP P+ Sbjct: 295 ADVFAIDEQAGQFCIEVFFFRNFQNWGNRAYFPKADRSMSADEVLASFISQFYDDKPAPK 354 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 +L+S E+ L+ + + ++V++ P++GE++ +++ A NA + ++L+ S Sbjct: 355 LVLVSHTIEDAELVAAALSSRVEHRVEVHQPQRGERKNLVDYAQRNAKEALGRRLADTAS 414 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 +L + F L P+R+E+YDNSHI G +AVG M+V G GF+K YR FN+ + Sbjct: 415 QGKLLTALGQAFGLDKPPRRVEVYDNSHISGTAAVGGMIVAGPTGFMKTHYRTFNIKSEE 474 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPK------------------KQEYSFPSW 463 + DD MMR VL RRF +L K +FP+W Sbjct: 475 LSPGDDFGMMREVLTRRFKRLAKEAPRTPREADAGEPQAPEQAVPAVAEVQDDPDAFPAW 534 Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMR 523 PD+V++DGG GQL AA+ L ++ V + ++ IAKG R AG E FFV L R Sbjct: 535 PDLVLIDGGAGQLEAARASLAEIGVTG-VPLVGIAKGRDRDAGRETFFVPGRSPFKLPPR 593 Query: 524 DPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMIS 582 DP+LYF+QRLRDEAHRFAI THR RRK+ +PLDEI GIGP RKR LL FGTVK I Sbjct: 594 DPVLYFVQRLRDEAHRFAIGTHRARRKREMTKNPLDEIAGIGPTRKRALLHHFGTVKAIE 653 Query: 583 RSSPETLASIEGISKKIACKIYNHFHKNT 611 R++ E LA G++ A +Y+ FH N Sbjct: 654 RAALEDLAKAPGVNAATARAVYDFFHANA 682 >gi|294852061|ref|ZP_06792734.1| excinuclease ABC [Brucella sp. NVSL 07-0026] gi|294820650|gb|EFG37649.1| excinuclease ABC [Brucella sp. NVSL 07-0026] Length = 702 Score = 592 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 312/609 (51%), Positives = 419/609 (68%), Gaps = 5/609 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + G VLYVGKA NL+KR+ +Y H++RIT MI + + F VT Sbjct: 93 KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 152 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T H+ P ++KHR + + +G YFG Sbjct: 153 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 212 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TIN+LQR F LR+C DSVF RTRPCLL+QIKRCS PCT EIS E Y Sbjct: 213 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 272 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + ++K+ +A M A+ D+E A ++RDRLAALSH+Q+H Sbjct: 273 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 332 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ + CIQ FF GQN G +F K DS A++L FL QFY DKPCP Sbjct: 333 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 392 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +LLSE EE SL+ + + G+KV+++VP++GEK+++++ AL NA + ++L+ Sbjct: 393 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 452 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ + F LP P+RIE+YDNSHIMG +AVG M+V G GFVKNQYRKFN+ Sbjct: 453 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 512 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 D+ DD MMR V+ERRFS+L+K + + +FP+WPDV+++DGG+GQ+ A + Sbjct: 513 DITPGDDFGMMREVIERRFSRLVKEHGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 571 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 +L ++ + + +T I IAKG R AG E+FF++ + L RDP+LYFIQRLRDEAHRF Sbjct: 572 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 631 Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI THR RRKK +PLDEI GIGP RKR LL FGT K +SR++ E L I+GIS+ + Sbjct: 632 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 691 Query: 600 ACKIYNHFH 608 A I++HF Sbjct: 692 ARAIHDHFR 700 >gi|119367493|sp|Q8UGA9|UVRC_AGRT5 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C Length = 681 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 324/619 (52%), Positives = 424/619 (68%), Gaps = 9/619 (1%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +P PGVY+M + AG VLYVGKA +L+KR+ +Y H++RI M+ ++ F T Sbjct: 63 KHLPNSPGVYRMFNEAGDVLYVGKARSLKKRVGNYAQGRVHSNRIAQMVRFTTHMEFVTT 122 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+LLRDDKSFPYILIT ++ PA++KHR + +G YFG Sbjct: 123 RTETEALLLEANLIKRLRPRFNVLLRDDKSFPYILITADNRAPAIFKHRGARARKGDYFG 182 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TINSLQR F +R+C DSVF RTRPCLL+QIKRCSGPCT E+S E Y E Sbjct: 183 PFASAGAVGRTINSLQRAFLIRTCTDSVFETRTRPCLLYQIKRCSGPCTHEVSDEGYAEL 242 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + +K IAR MN+A+ D+E A I+RDRLAALSH+Q+H Sbjct: 243 VKEAKDFLSGKSQAVKTAIARQMNEASEDLDFERAAIYRDRLAALSHVQSHQGINPAGIE 302 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++H ++CIQ FF GQN G +F K D ++IL+ FL QFY DKP P Sbjct: 303 EADVFAIHHEGGISCIQVFFFRTGQNWGNRAYFPKADPSLPGSEILNAFLAQFYDDKPVP 362 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + ILLSE EE LL + ++ G+KV I+VP++GEK+ I + L NA +H +KL+ Sbjct: 363 KQILLSETVEEQELLAAALGEKAGHKVTISVPQRGEKKDITDHVLANAREAHGRKLAETS 422 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +LK F + F LP++P+RIEIYDNSHIMG +AVG MVV G GFVKNQYRKFN+ Sbjct: 423 SQARLLKGFAETFNLPYVPRRIEIYDNSHIMGTNAVGGMVVAGPEGFVKNQYRKFNIKST 482 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLN-----FHPKKQEYSFPSWPDVVILDGGKGQ 475 D+ DD MMR V+ RRFS+L+K E + + + FP+WPDV+++DGG+GQ Sbjct: 483 DITPGDDFGMMREVMTRRFSRLLKEEGKPDRAQTPTPEEAADLPFPAWPDVILIDGGQGQ 542 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 ++A + +L +L + + +T I +AKG R AG E+FF L RDP+LYFIQR+RD Sbjct: 543 MTAVRAILDELGIRDCVTAIGVAKGVDREAGRERFFADGRSDFSLPPRDPVLYFIQRMRD 602 Query: 536 EAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFAI +HR RRKK +PLDEI+GIGP RKR LLQ FGT K +SR+ L ++ G Sbjct: 603 EAHRFAIGSHRARRKKEMVRNPLDEISGIGPGRKRSLLQHFGTAKAVSRAGLNDLMTVTG 662 Query: 595 ISKKIACKIYNHFHKNTSH 613 IS+ +A +IYNHFH++ S Sbjct: 663 ISETVARQIYNHFHESGSD 681 >gi|254709820|ref|ZP_05171631.1| excinuclease ABC subunit C [Brucella pinnipedialis B2/94] gi|261317358|ref|ZP_05956555.1| UvrABC system protein C [Brucella pinnipedialis B2/94] gi|261296581|gb|EEY00078.1| UvrABC system protein C [Brucella pinnipedialis B2/94] Length = 690 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 311/609 (51%), Positives = 419/609 (68%), Gaps = 5/609 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + G VLYVGKA NL+KR+ +Y H++RIT +I + + F VT Sbjct: 81 KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRIIRETVTMEFVVT 140 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T H+ P ++KHR + + +G YFG Sbjct: 141 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 200 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TIN+LQR F LR+C DSVF RTRPCLL+QIKRCS PCT EIS E Y Sbjct: 201 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 260 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + ++K+ +A M A+ D+E A ++RDRLAALSH+Q+H Sbjct: 261 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 320 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ + CIQ FF GQN G +F K DS A++L FL QFY DKPCP Sbjct: 321 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 380 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +LLSE EE SL+ + + G+KV+++VP++GEK+++++ AL NA + ++L+ Sbjct: 381 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 440 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ + F LP P+RIE+YDNSHIMG +AVG M+V G GFVKNQYRKFN+ Sbjct: 441 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 500 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 D+ DD MMR V+ERRFS+L+K + + +FP+WPDV+++DGG+GQ+ A + Sbjct: 501 DITPGDDFGMMREVIERRFSRLVKEPGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 559 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 +L ++ + + +T I IAKG R AG E+FF++ + L RDP+LYFIQRLRDEAHRF Sbjct: 560 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 619 Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI THR RRKK +PLDEI GIGP RKR LL FGT K +SR++ E L I+GIS+ + Sbjct: 620 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 679 Query: 600 ACKIYNHFH 608 A I++HF Sbjct: 680 ARAIHDHFR 688 >gi|256031311|ref|ZP_05444925.1| excinuclease ABC subunit C [Brucella pinnipedialis M292/94/1] gi|265988396|ref|ZP_06100953.1| UvrABC system protein C [Brucella pinnipedialis M292/94/1] gi|264660593|gb|EEZ30854.1| UvrABC system protein C [Brucella pinnipedialis M292/94/1] Length = 690 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 311/609 (51%), Positives = 419/609 (68%), Gaps = 5/609 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + G VLYVGKA NL+KR+ +Y H++RIT +I + + F VT Sbjct: 81 KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRIIRETVTMEFVVT 140 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T H+ P ++KHR + + +G YFG Sbjct: 141 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 200 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TIN+LQR F LR+C DSVF RTRPCLL+QIKRCS PCT EIS E Y Sbjct: 201 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 260 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + ++K+ +A M A+ D+E A ++RDRLAALSH+Q+H Sbjct: 261 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 320 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ + CIQ FF GQN G +F K DS A++L FL QFY DKPCP Sbjct: 321 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 380 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +LLSE EE SL+ + + G+KV+++VP++GEK+++++ AL NA + ++L+ Sbjct: 381 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 440 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ + F LP P+RIE+YDNSHIMG +AVG M+V G GFVKNQYRKFN+ Sbjct: 441 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 500 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 D+ DD MMR V+ERRFS+L+K + + +FP+WPDV+++DGG+GQ+ A + Sbjct: 501 DITPGDDFGMMREVIERRFSRLVKEPGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 559 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 +L ++ + + +T I IAKG R AG E+FF++ + L RDP+LYFIQRLRDEAHRF Sbjct: 560 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 619 Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI THR RRKK +PLDEI GIGP RKR LL FGT K +SR++ E L I+GIS+ + Sbjct: 620 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 679 Query: 600 ACKIYNHFH 608 A I++HF Sbjct: 680 ARAIHDHFR 688 >gi|225627198|ref|ZP_03785236.1| excinuclease ABC, C subunit [Brucella ceti str. Cudo] gi|225618033|gb|EEH15077.1| excinuclease ABC, C subunit [Brucella ceti str. Cudo] Length = 702 Score = 590 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 313/609 (51%), Positives = 419/609 (68%), Gaps = 5/609 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + G VLYVGKA NL+KR+ +Y H++RIT MI + + F VT Sbjct: 93 KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 152 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T H+ P ++KHR + + +G YFG Sbjct: 153 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 212 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TIN+LQR F LR+C DSVF RTRPCLL+QIKRCS PCT EIS E Y Sbjct: 213 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 272 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + ++K+ +A M A+ D+E A ++RDRLAALSH+Q+H Sbjct: 273 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 332 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ + CIQ FF GQN G +F K DS A++L FL QFY DKPCP Sbjct: 333 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 392 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +LLSE EE SL+ + + G+KV+++VP++GEK+++++ AL NA + ++L+ Sbjct: 393 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 452 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ + F LP P+RIE+YDNSHIMG +AVG M+V G GFVKNQYRKFN+ Sbjct: 453 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 512 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 D+ DD MMR V+ERRFS+L+K + + +FP+WPDV+++DGG+GQ+ A + Sbjct: 513 DITPGDDFGMMREVIERRFSRLVKEPGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 571 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 +L K+ + + +T I IAKG R AG E+FF++ + L RDP+LYFIQRLRDEAHRF Sbjct: 572 QILGKMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 631 Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI THR RRKK +PLDEI GIGP RKR LL FGT K +SR++ E L I+GIS+ + Sbjct: 632 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 691 Query: 600 ACKIYNHFH 608 A I++HF Sbjct: 692 ARAIHDHFR 700 >gi|17987534|ref|NP_540168.1| excinuclease ABC subunit C [Brucella melitensis bv. 1 str. 16M] gi|256044391|ref|ZP_05447295.1| excinuclease ABC subunit C [Brucella melitensis bv. 1 str. Rev.1] gi|260563743|ref|ZP_05834229.1| excinuclease ABC subunit C [Brucella melitensis bv. 1 str. 16M] gi|265990810|ref|ZP_06103367.1| UvrABC system protein C [Brucella melitensis bv. 1 str. Rev.1] gi|17983236|gb|AAL52432.1| excinuclease abc subunit c [Brucella melitensis bv. 1 str. 16M] gi|260153759|gb|EEW88851.1| excinuclease ABC subunit C [Brucella melitensis bv. 1 str. 16M] gi|263001594|gb|EEZ14169.1| UvrABC system protein C [Brucella melitensis bv. 1 str. Rev.1] Length = 685 Score = 590 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 313/609 (51%), Positives = 418/609 (68%), Gaps = 5/609 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + G VLYVGKA NL+KR+ +Y H++RIT MI + + F VT Sbjct: 76 KRLPNNPGVYRMFNSDGGVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 135 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T H+ P ++KHR + + +G YFG Sbjct: 136 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 195 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TIN+LQR F LR+C DSVF RTRPCLL+QIKRCS PCT EIS E Y Sbjct: 196 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 255 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + ++K+ +A M A+ D+E A ++RDRLAALSH+Q+H Sbjct: 256 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 315 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ + CIQ FF GQN G +F K DS A++L FL QFY DKPCP Sbjct: 316 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 375 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +LLSE EE SL+ + + G+KV+++VP++GEK+++++ AL NA + ++L+ Sbjct: 376 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 435 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ + F LP P+RIE+YDNSHIMG +AVG M+V G GFVKNQYRKFN+ Sbjct: 436 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 495 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 D+ DD MMR V+ERRFS+L+K K +FP+WPDV+++DGG+GQ+ A + Sbjct: 496 DITPGDDFGMMREVIERRFSRLVKEH-GTPAGEVKNPDAFPAWPDVILIDGGQGQVGAVR 554 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 +L ++ + + +T I IAKG R AG E+FF++ + L RDP+LYFIQRLRDEAHRF Sbjct: 555 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 614 Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI THR RRKK +PLDEI GIGP RKR LL FGT K +SR++ E L I+GIS+ + Sbjct: 615 AIGTHRARRKKEIVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 674 Query: 600 ACKIYNHFH 608 A I++HF Sbjct: 675 ARAIHDHFR 683 >gi|161611214|ref|YP_221454.2| excinuclease ABC subunit C [Brucella abortus bv. 1 str. 9-941] gi|162002877|ref|YP_414162.2| excinuclease ABC subunit C [Brucella melitensis biovar Abortus 2308] gi|189023910|ref|YP_001934678.1| excinuclease ABC subunit C [Brucella abortus S19] gi|254688970|ref|ZP_05152224.1| excinuclease ABC subunit C [Brucella abortus bv. 6 str. 870] gi|254693452|ref|ZP_05155280.1| excinuclease ABC subunit C [Brucella abortus bv. 3 str. Tulya] gi|254697105|ref|ZP_05158933.1| excinuclease ABC subunit C [Brucella abortus bv. 2 str. 86/8/59] gi|254730000|ref|ZP_05188578.1| excinuclease ABC subunit C [Brucella abortus bv. 4 str. 292] gi|256257219|ref|ZP_05462755.1| excinuclease ABC subunit C [Brucella abortus bv. 9 str. C68] gi|260545588|ref|ZP_05821329.1| excinuclease ABC subunit C [Brucella abortus NCTC 8038] gi|260754460|ref|ZP_05866808.1| excinuclease ABC subunit C [Brucella abortus bv. 6 str. 870] gi|260757679|ref|ZP_05870027.1| excinuclease ABC subunit C [Brucella abortus bv. 4 str. 292] gi|260761506|ref|ZP_05873849.1| excinuclease ABC subunit C [Brucella abortus bv. 2 str. 86/8/59] gi|260883489|ref|ZP_05895103.1| UvrABC system protein C [Brucella abortus bv. 9 str. C68] gi|261213706|ref|ZP_05927987.1| excinuclease ABC subunit C [Brucella abortus bv. 3 str. Tulya] gi|297248068|ref|ZP_06931786.1| excinuclease ABC, C subunit [Brucella abortus bv. 5 str. B3196] gi|189019482|gb|ACD72204.1| excinuclease ABC subunit C [Brucella abortus S19] gi|260096995|gb|EEW80870.1| excinuclease ABC subunit C [Brucella abortus NCTC 8038] gi|260667997|gb|EEX54937.1| excinuclease ABC subunit C [Brucella abortus bv. 4 str. 292] gi|260671938|gb|EEX58759.1| excinuclease ABC subunit C [Brucella abortus bv. 2 str. 86/8/59] gi|260674568|gb|EEX61389.1| excinuclease ABC subunit C [Brucella abortus bv. 6 str. 870] gi|260873017|gb|EEX80086.1| UvrABC system protein C [Brucella abortus bv. 9 str. C68] gi|260915313|gb|EEX82174.1| excinuclease ABC subunit C [Brucella abortus bv. 3 str. Tulya] gi|297175237|gb|EFH34584.1| excinuclease ABC, C subunit [Brucella abortus bv. 5 str. B3196] Length = 690 Score = 590 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 313/609 (51%), Positives = 418/609 (68%), Gaps = 5/609 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + G VLYVGKA NL+KR+ +Y H++RIT MI + + F VT Sbjct: 81 KRLPNNPGVYRMFNSDGGVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 140 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T H+ P ++KHR + + +G YFG Sbjct: 141 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 200 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TIN+LQR F LR+C DSVF RTRPCLL+QIKRCS PCT EIS E Y Sbjct: 201 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 260 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + ++K+ +A M A+ D+E A ++RDRLAALSH+Q+H Sbjct: 261 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 320 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ + CIQ FF GQN G +F K DS A++L FL QFY DKPCP Sbjct: 321 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 380 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +LLSE EE SL+ + + G+KV+++VP++GEK+++++ AL NA + ++L+ Sbjct: 381 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 440 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ + F LP P+RIE+YDNSHIMG +AVG M+V G GFVKNQYRKFN+ Sbjct: 441 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 500 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 D+ DD MMR V+ERRFS+L+K K +FP+WPDV+++DGG+GQ+ A + Sbjct: 501 DITPGDDFGMMREVIERRFSRLVKEH-GTPAGEVKNPDAFPAWPDVILIDGGQGQVGAVR 559 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 +L ++ + + +T I IAKG R AG E+FF++ + L RDP+LYFIQRLRDEAHRF Sbjct: 560 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 619 Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI THR RRKK +PLDEI GIGP RKR LL FGT K +SR++ E L I+GIS+ + Sbjct: 620 AIGTHRARRKKEIVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 679 Query: 600 ACKIYNHFH 608 A I++HF Sbjct: 680 ARAIHDHFR 688 >gi|118591881|ref|ZP_01549276.1| excinuclease ABC subunit C [Stappia aggregata IAM 12614] gi|118435524|gb|EAV42170.1| excinuclease ABC subunit C [Stappia aggregata IAM 12614] Length = 659 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 301/627 (48%), Positives = 409/627 (65%), Gaps = 22/627 (3%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+MLD G VLYVGKA +L+KR+ SY ++RI MI + F VT Sbjct: 34 KRLPNGPGVYRMLDENGEVLYVGKARSLKKRVTSYTRLQGQSNRIMRMILATAAMEFVVT 93 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+LLRDDKSFPYIL+T H+ PA+ KHR + +G YFG Sbjct: 94 QTEPEALLLEANLIKRLRPRFNVLLRDDKSFPYILVTGDHESPAIVKHRGARKRKGDYFG 153 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV++TIN+LQ+ F +R+C+DS + +R+RPCL +QIKRC+GPCTGEI Y Sbjct: 154 PFASAGAVDRTINALQKAFLIRTCSDSYYENRSRPCLQYQIKRCAGPCTGEIDPADYAGL 213 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + +K ++A+ M A+ ++E A I+RDRL+ALSHIQ H Sbjct: 214 VSEAKAFLSGRSQLIKTQLAKQMEAASADLEFERAAIYRDRLSALSHIQAHQGINPQSVE 273 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ C+Q FF GQN G +F K D A IL FL QFY DKP P Sbjct: 274 EADVFAIHQEGGQTCVQVFFFRTGQNWGNRAYFPKADKSFEEADILESFLAQFYDDKPAP 333 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 ILLS E E LL + ++ G KV + PK+GEK+++++ AL NA + ++L+ Sbjct: 334 RQILLSHELSEQDLLAQALTERTGRKVDVACPKRGEKKELVDHALTNAREALGRRLAETS 393 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +LK + F L P+RIE+YDNSHIMG +AVG M+V G GF K QYRKFN+ Sbjct: 394 SQARLLKGVAEAFDLAQPPRRIEVYDNSHIMGTNAVGGMIVAGLEGFAKGQYRKFNIKSE 453 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSF-----------------PSW 463 D+ DD MMR VL RRFS+L+K + P+ + + P+W Sbjct: 454 DLVPGDDYGMMREVLTRRFSRLLKEHAREDSKPQADDPTLEDADASDLEAVPTDTGVPAW 513 Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMR 523 P++V++DGG+GQL+AA+ L+ L + + + ++ IAKGP R AG EKFF+ ++ +L R Sbjct: 514 PELVLIDGGQGQLTAARETLESLGITD-VPLVGIAKGPDRDAGREKFFIPGRQSFMLPER 572 Query: 524 DPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMIS 582 DP+LYF+QRLRDEAHRFAI +HR RRKK +PLDEI G+GP RK+ LL+ FGT K +S Sbjct: 573 DPVLYFVQRLRDEAHRFAIGSHRARRKKDITRNPLDEIAGVGPTRKKALLRHFGTAKAVS 632 Query: 583 RSSPETLASIEGISKKIACKIYNHFHK 609 ++ + LA++ GIS+ IA +Y+HFH+ Sbjct: 633 KAGVDDLAAVPGISEAIAKLVYDHFHE 659 >gi|255764496|ref|YP_003065012.2| excinuclease ABC subunit C [Candidatus Liberibacter asiaticus str. psy62] gi|254547847|gb|ACT57072.2| excinuclease ABC subunit C [Candidatus Liberibacter asiaticus str. psy62] Length = 616 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 616/616 (100%), Positives = 616/616 (100%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF Sbjct: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS Sbjct: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY Sbjct: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN Sbjct: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP Sbjct: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI Sbjct: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN Sbjct: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ Sbjct: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF Sbjct: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA Sbjct: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 Query: 601 CKIYNHFHKNTSHTPT 616 CKIYNHFHKNTSHTPT Sbjct: 601 CKIYNHFHKNTSHTPT 616 >gi|90419512|ref|ZP_01227422.1| excinuclease ABC, C subunit, uvrC [Aurantimonas manganoxydans SI85-9A1] gi|90336449|gb|EAS50190.1| excinuclease ABC, C subunit, uvrC [Aurantimonas manganoxydans SI85-9A1] Length = 688 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 304/621 (48%), Positives = 404/621 (65%), Gaps = 14/621 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++++P PGVY+M G VLYVGKA +L+KR+ +Y HT RI MI + + F Sbjct: 66 AKRLPNQPGVYRMFGKDGDVLYVGKARSLKKRVANYTRLGGHTQRIARMIRETRQMEFVT 125 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLEAN+IKRL+PR+N+LLRDDKSFPYIL+++ H+ PA+ KHR + + +GSYF Sbjct: 126 TRTETEALLLEANLIKRLRPRYNVLLRDDKSFPYILVSEDHEAPAIMKHRGARSRKGSYF 185 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPFAS AV +TINSLQR F LR+C DSV+ RTRPCLL QIKRCS PCTGEIS Y Sbjct: 186 GPFASAGAVGRTINSLQRAFLLRTCTDSVYESRTRPCLLHQIKRCSAPCTGEISIADYDG 245 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240 V EAK FLSG ++ +K ++ M +A+ D+E A I+RDRLAALSH+Q+H Sbjct: 246 LVREAKAFLSGRSNQIKNGMSAAMQEASDDLDFERAAIYRDRLAALSHVQSHQGINPTGI 305 Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 D F+++ + CIQ FF GQN G +F K DS +++L FL QFY DKP Sbjct: 306 EEADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLEPSEVLGAFLAQFYDDKPV 365 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P +LL ++ LL + + ++V+I VP +G KR +++ A NA + ++L+ Sbjct: 366 PRLVLLPLMVDDGPLLAEALSLKASHRVQIGVPARGLKRDLVDHATANAREALGRRLAET 425 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 S +LK + F L P+RIE+YDNSHIMG +AVG M+V G GF KN YRKFN+ Sbjct: 426 SSQARLLKGVAETFGLARTPRRIEVYDNSHIMGTAAVGGMIVAGPQGFAKNHYRKFNIRG 485 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKN----------EENLNFHPKKQEYSFPSWPDVVIL 469 +D+ DD MM+ V+ RRFS+LIK E+ + + S P+WPD+V++ Sbjct: 486 DDITPGDDFGMMKEVMRRRFSRLIKEHGDVPLSAQTEDEEDPQDALSDSSMPAWPDLVLI 545 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ+SA + +L +L + +R+T I +AKG R AG E+F + E L RDP+LYF Sbjct: 546 DGGKGQISAVREILDELGIADRVTTIGVAKGVDRDAGRERFVTGEREPFSLPPRDPVLYF 605 Query: 530 IQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 +QRLRDEAHRFAI THR RRKK +PLDEI GIGP RKR LL FGT K +SR++ Sbjct: 606 LQRLRDEAHRFAIGTHRARRKKELVKNPLDEIGGIGPSRKRALLHHFGTAKAVSRAALSD 665 Query: 589 LASIEGISKKIACKIYNHFHK 609 L +EGIS +A IY+HFH+ Sbjct: 666 LREVEGISAAMAKSIYDHFHE 686 >gi|161486699|ref|NP_697713.2| excinuclease ABC subunit C [Brucella suis 1330] Length = 690 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 311/609 (51%), Positives = 418/609 (68%), Gaps = 5/609 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + G VLYVGKA NL+KR+ +Y H++RIT MI + + F VT Sbjct: 81 KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 140 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKR +PRFN+L+RDDKSFPYIL+T H+ P ++KHR + + +G YFG Sbjct: 141 RTETEALLLEANLIKRSRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 200 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TIN+LQR F LR+C DSVF RTRPCLL+QIKRCS PCT EIS E Y Sbjct: 201 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 260 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + ++K+ +A M A+ D+E A ++RDRLAALSH+Q+H Sbjct: 261 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 320 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ + CIQ FF GQN G +F K DS A++L FL QFY DKPCP Sbjct: 321 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 380 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +LLSE EE SL+ + + G+KV+++VP++GEK+++++ AL NA + ++L+ Sbjct: 381 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 440 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ + F LP P+RIE+YDNSHIMG +AVG M+V G GFVKNQYRKFN+ Sbjct: 441 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 500 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 D+ DD MMR V+ERRFS+L+K + + +FP+WPDV+++DGG+GQ+ A + Sbjct: 501 DITPGDDFGMMREVIERRFSRLVKEHGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 559 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 +L ++ + + +T I IAKG R AG E+FF++ + L RDP+LYFIQRLRDEAHRF Sbjct: 560 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 619 Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI THR RRKK +PLDEI GIGP RKR LL FGT K +SR++ E L I+GIS+ + Sbjct: 620 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 679 Query: 600 ACKIYNHFH 608 A I++HF Sbjct: 680 ARAIHDHFR 688 >gi|225852219|ref|YP_002732452.1| excinuclease ABC subunit C [Brucella melitensis ATCC 23457] gi|256264273|ref|ZP_05466805.1| excinuclease ABC subunit C [Brucella melitensis bv. 2 str. 63/9] gi|225640584|gb|ACO00498.1| excinuclease ABC, C subunit [Brucella melitensis ATCC 23457] gi|263094533|gb|EEZ18342.1| excinuclease ABC subunit C [Brucella melitensis bv. 2 str. 63/9] gi|326408718|gb|ADZ65783.1| excinuclease ABC subunit C [Brucella melitensis M28] gi|326538442|gb|ADZ86657.1| excinuclease ABC, C subunit [Brucella melitensis M5-90] Length = 685 Score = 590 bits (1520), Expect = e-166, Method: Composition-based stats. Identities = 313/609 (51%), Positives = 418/609 (68%), Gaps = 5/609 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + G VLYVGKA NL+KR+ +Y H++RIT MI + + F VT Sbjct: 76 KRLPNNPGVYRMFNSDGGVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 135 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T H+ P ++KHR + + +G YFG Sbjct: 136 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 195 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TIN+LQR F LR+C DSVF RTRPCLL+QIKRCS PCT EIS E Y Sbjct: 196 PFASTGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 255 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + ++K+ +A M A+ D+E A ++RDRLAALSH+Q+H Sbjct: 256 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 315 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ + CIQ FF GQN G +F K DS A++L FL QFY DKPCP Sbjct: 316 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 375 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +LLSE EE SL+ + + G+KV+++VP++GEK+++++ AL NA + ++L+ Sbjct: 376 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 435 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ + F LP P+RIE+YDNSHIMG +AVG M+V G GFVKNQYRKFN+ Sbjct: 436 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 495 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 D+ DD MMR V+ERRFS+L+K K +FP+WPDV+++DGG+GQ+ A + Sbjct: 496 DITPGDDFGMMREVIERRFSRLVKEH-GTPAGEVKNPDAFPAWPDVILIDGGQGQVGAVR 554 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 +L ++ + + +T I IAKG R AG E+FF++ + L RDP+LYFIQRLRDEAHRF Sbjct: 555 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 614 Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI THR RRKK +PLDEI GIGP RKR LL FGT K +SR++ E L I+GIS+ + Sbjct: 615 AIGTHRARRKKEIVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 674 Query: 600 ACKIYNHFH 608 A I++HF Sbjct: 675 ARAIHDHFR 683 >gi|256113234|ref|ZP_05454102.1| excinuclease ABC subunit C [Brucella melitensis bv. 3 str. Ether] gi|265994646|ref|ZP_06107203.1| UvrABC system protein C [Brucella melitensis bv. 3 str. Ether] gi|262765759|gb|EEZ11548.1| UvrABC system protein C [Brucella melitensis bv. 3 str. Ether] Length = 685 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 314/609 (51%), Positives = 419/609 (68%), Gaps = 5/609 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + G VLYVGKA NL+KR+ +Y H++RIT MI + + F VT Sbjct: 76 KRLPNNPGVYRMFNSDGGVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 135 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T H+ P ++KHR + + +G YFG Sbjct: 136 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 195 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TIN+LQR F LR+C DSVF RTRPCLL+QIKRCS PCT EIS E Y Sbjct: 196 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 255 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + ++K+ +A M A+ D+E A ++RDRLAALSH+Q+H Sbjct: 256 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 315 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ + CIQ FF GQN G +F K DS A++L FL QFY DKPCP Sbjct: 316 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 375 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +LLSE AEE SL+ + + G+KV+++VP++GEK+++++ AL NA + ++L+ Sbjct: 376 KLVLLSETAEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 435 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ + F LP P+RIE+YDNSHIMG +AVG M+V G GFVKNQYRKFN+ Sbjct: 436 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 495 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 D+ DD MMR V+ERRFS+L+K K +FP+WPDV+++DGG+GQ+ A + Sbjct: 496 DITPGDDFGMMREVIERRFSRLVKEH-GTPAGEVKNPDAFPAWPDVILIDGGQGQVGAVR 554 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 +L ++ + + +T I IAKG R AG E+FF++ + L RDP+LYFIQRLRDEAHRF Sbjct: 555 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 614 Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI THR RRKK +PLDEI GIGP RKR LL FGT K +SR++ E L I+GIS+ + Sbjct: 615 AIGTHRARRKKEIVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 674 Query: 600 ACKIYNHFH 608 A I++HF Sbjct: 675 ARAIHDHFR 683 >gi|222085474|ref|YP_002544004.1| excinuclease ABC, C subunit [Agrobacterium radiobacter K84] gi|221722922|gb|ACM26078.1| excinuclease ABC, C subunit [Agrobacterium radiobacter K84] Length = 680 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 323/620 (52%), Positives = 427/620 (68%), Gaps = 11/620 (1%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + AG VLYVGKA +L+KR+ +Y H++RI M+ + N+ F T Sbjct: 60 KRLPNNPGVYRMFNEAGDVLYVGKARSLKKRVANYAMGRVHSNRIARMVRETANMEFVTT 119 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+LLRDDKSFPYILIT H+ PA++KHR + +G YFG Sbjct: 120 RTETEALLLEANLIKRLRPRFNVLLRDDKSFPYILITGNHRAPAIFKHRGARARKGEYFG 179 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TINSLQR F +R+CADSVF RTRPCLL+QIKRCSGPCT EIS E Y E Sbjct: 180 PFASAGAVGRTINSLQRAFLIRTCADSVFETRTRPCLLYQIKRCSGPCTHEISDEGYAEL 239 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + N+K +A MN A D+E A + RDRLAALSH+Q+H Sbjct: 240 VQEAKDFLSGKSQNVKAHMAEAMNAAAEDLDFERAAVFRDRLAALSHVQSHQGINPAGVE 299 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++H ++CIQ FF GQN G +F K D ++A++L+ FL QFY DKP P Sbjct: 300 EADVFAIHHEGGISCIQVFFFRTGQNWGNRAYFPKADPSLSSAEVLNSFLAQFYDDKPVP 359 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + ILLSE EE LL + ++ G+KV I VP++GEKR +++ + NA +H +KL+ Sbjct: 360 KQILLSETVEEIELLAAALGEKAGHKVSILVPQRGEKRDLVDHVVANAREAHGRKLAETA 419 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ F + F LP++P+RIEIYDNSHIMG +AVG MVV G GFVK QYRKFN+ Sbjct: 420 SQSRLLEGFKETFQLPYVPQRIEIYDNSHIMGTNAVGGMVVAGPEGFVKGQYRKFNIKST 479 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFH-------PKKQEYSFPSWPDVVILDGGK 473 D+ DD MMR V+ RRFS+L+K E + + SFP WPDV+++DGG+ Sbjct: 480 DITPGDDFGMMREVMTRRFSRLLKEEGIPDRSGAAEAAAVDAADQSFPVWPDVILIDGGQ 539 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 GQ++A + +L++L + + + I +AKG R AG E+FF E+ L RDP+LYFIQR+ Sbjct: 540 GQMTAVRAILEELGITDSVIAIGVAKGVDRDAGRERFFALSRESFTLPPRDPVLYFIQRM 599 Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDEAHRFAI +HR RRKK +PLDEI GIGP RKR LLQ FGT K +SR++ L ++ Sbjct: 600 RDEAHRFAIGSHRARRKKELVKNPLDEIGGIGPSRKRALLQHFGTAKAVSRAALSDLMAV 659 Query: 593 EGISKKIACKIYNHFHKNTS 612 EGIS+ +A ++YNHFH++ + Sbjct: 660 EGISEAVATQVYNHFHEDAA 679 >gi|325292503|ref|YP_004278367.1| excinuclease ABC subunit C [Agrobacterium sp. H13-3] gi|325060356|gb|ADY64047.1| excinuclease ABC subunit C [Agrobacterium sp. H13-3] Length = 683 Score = 589 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 320/621 (51%), Positives = 423/621 (68%), Gaps = 11/621 (1%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +P PGVY+M + A VLYVGKA +L+KR+ +Y H++RI M+ ++ F T Sbjct: 63 KHLPNSPGVYRMFNEANDVLYVGKARSLKKRVGNYAQGRVHSNRIAQMVRLTAHMEFVTT 122 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+LLRDDKSFPYILIT ++ PA++KHR + +G YFG Sbjct: 123 RTETEALLLEANLIKRLRPRFNVLLRDDKSFPYILITADNRAPAIFKHRGARARKGDYFG 182 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TINSLQR F +R+C DSVF RTRPCLL+QIKRCSGPCT E+S E Y E Sbjct: 183 PFASAGAVGRTINSLQRAFLIRTCTDSVFETRTRPCLLYQIKRCSGPCTHEVSDEGYAEL 242 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + ++K IAR MN+A D+E A ++RDRLAALSH+Q+H Sbjct: 243 VKEAKDFLSGKSQSVKTAIARQMNEAAEDLDFERAAVYRDRLAALSHVQSHQGINPAGIE 302 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++H ++CIQ FF GQN G +F K D ++IL+ FL QFY DKP P Sbjct: 303 EADVFAIHHEGGISCIQVFFFRTGQNWGNRAYFPKADPSLPGSEILNAFLAQFYDDKPVP 362 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + ILLSE EE LL + ++ G+KV I+VP++GEK+ I + L NA +H +KL+ Sbjct: 363 KQILLSETVEEQELLAAALGEKAGHKVTISVPQRGEKKDITDHVLANAREAHGRKLAETS 422 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +LK F + F LP++P+RIEIYDNSHIMG +AVG MVV G GFVKNQYRKFN+ Sbjct: 423 SQARLLKGFAETFNLPYVPRRIEIYDNSHIMGTNAVGGMVVAGPEGFVKNQYRKFNIKST 482 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLN-------FHPKKQEYSFPSWPDVVILDGGK 473 D+ DD MMR V+ RRFS+L+K E + + + FP+WPDV+++DGG+ Sbjct: 483 DITPGDDFGMMREVMTRRFSRLLKEEGKPDRAQTLTPTPEEAADMPFPAWPDVILIDGGQ 542 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 GQ++A + +L +L++ + + I +AKG R AG E+FF L RDP+LYFIQR+ Sbjct: 543 GQMTAVRAILDELDIRDSVIAIGVAKGVDREAGRERFFADGRSDFSLPPRDPVLYFIQRM 602 Query: 534 RDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDEAHRFAI +HR RRKK +PLDEI+GIGP RKR LLQ FGT K +SR+ L ++ Sbjct: 603 RDEAHRFAIGSHRARRKKEMVRNPLDEISGIGPGRKRSLLQHFGTAKAVSRAGLNDLMNV 662 Query: 593 EGISKKIACKIYNHFHKNTSH 613 GIS+ +A +IYNHFH+++ Sbjct: 663 TGISEAVARQIYNHFHESSGD 683 >gi|237815150|ref|ZP_04594148.1| excinuclease ABC, C subunit [Brucella abortus str. 2308 A] gi|237789987|gb|EEP64197.1| excinuclease ABC, C subunit [Brucella abortus str. 2308 A] Length = 702 Score = 588 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 313/609 (51%), Positives = 418/609 (68%), Gaps = 5/609 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + G VLYVGKA NL+KR+ +Y H++RIT MI + + F VT Sbjct: 93 KRLPNNPGVYRMFNSDGGVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 152 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T H+ P ++KHR + + +G YFG Sbjct: 153 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 212 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TIN+LQR F LR+C DSVF RTRPCLL+QIKRCS PCT EIS E Y Sbjct: 213 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 272 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + ++K+ +A M A+ D+E A ++RDRLAALSH+Q+H Sbjct: 273 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 332 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ + CIQ FF GQN G +F K DS A++L FL QFY DKPCP Sbjct: 333 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 392 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +LLSE EE SL+ + + G+KV+++VP++GEK+++++ AL NA + ++L+ Sbjct: 393 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 452 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ + F LP P+RIE+YDNSHIMG +AVG M+V G GFVKNQYRKFN+ Sbjct: 453 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 512 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 D+ DD MMR V+ERRFS+L+K K +FP+WPDV+++DGG+GQ+ A + Sbjct: 513 DITPGDDFGMMREVIERRFSRLVKEH-GTPAGEVKNPDAFPAWPDVILIDGGQGQVGAVR 571 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 +L ++ + + +T I IAKG R AG E+FF++ + L RDP+LYFIQRLRDEAHRF Sbjct: 572 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 631 Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI THR RRKK +PLDEI GIGP RKR LL FGT K +SR++ E L I+GIS+ + Sbjct: 632 AIGTHRARRKKEIVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 691 Query: 600 ACKIYNHFH 608 A I++HF Sbjct: 692 ARAIHDHFR 700 >gi|159184627|ref|NP_354147.2| excinuclease ABC subunit C [Agrobacterium tumefaciens str. C58] gi|159139925|gb|AAK86932.2| excinuclease ABC chain C [Agrobacterium tumefaciens str. C58] Length = 642 Score = 588 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 324/619 (52%), Positives = 424/619 (68%), Gaps = 9/619 (1%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +P PGVY+M + AG VLYVGKA +L+KR+ +Y H++RI M+ ++ F T Sbjct: 24 KHLPNSPGVYRMFNEAGDVLYVGKARSLKKRVGNYAQGRVHSNRIAQMVRFTTHMEFVTT 83 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+LLRDDKSFPYILIT ++ PA++KHR + +G YFG Sbjct: 84 RTETEALLLEANLIKRLRPRFNVLLRDDKSFPYILITADNRAPAIFKHRGARARKGDYFG 143 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TINSLQR F +R+C DSVF RTRPCLL+QIKRCSGPCT E+S E Y E Sbjct: 144 PFASAGAVGRTINSLQRAFLIRTCTDSVFETRTRPCLLYQIKRCSGPCTHEVSDEGYAEL 203 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + +K IAR MN+A+ D+E A I+RDRLAALSH+Q+H Sbjct: 204 VKEAKDFLSGKSQAVKTAIARQMNEASEDLDFERAAIYRDRLAALSHVQSHQGINPAGIE 263 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++H ++CIQ FF GQN G +F K D ++IL+ FL QFY DKP P Sbjct: 264 EADVFAIHHEGGISCIQVFFFRTGQNWGNRAYFPKADPSLPGSEILNAFLAQFYDDKPVP 323 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + ILLSE EE LL + ++ G+KV I+VP++GEK+ I + L NA +H +KL+ Sbjct: 324 KQILLSETVEEQELLAAALGEKAGHKVTISVPQRGEKKDITDHVLANAREAHGRKLAETS 383 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +LK F + F LP++P+RIEIYDNSHIMG +AVG MVV G GFVKNQYRKFN+ Sbjct: 384 SQARLLKGFAETFNLPYVPRRIEIYDNSHIMGTNAVGGMVVAGPEGFVKNQYRKFNIKST 443 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLN-----FHPKKQEYSFPSWPDVVILDGGKGQ 475 D+ DD MMR V+ RRFS+L+K E + + + FP+WPDV+++DGG+GQ Sbjct: 444 DITPGDDFGMMREVMTRRFSRLLKEEGKPDRAQTPTPEEAADLPFPAWPDVILIDGGQGQ 503 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 ++A + +L +L + + +T I +AKG R AG E+FF L RDP+LYFIQR+RD Sbjct: 504 MTAVRAILDELGIRDCVTAIGVAKGVDREAGRERFFADGRSDFSLPPRDPVLYFIQRMRD 563 Query: 536 EAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFAI +HR RRKK +PLDEI+GIGP RKR LLQ FGT K +SR+ L ++ G Sbjct: 564 EAHRFAIGSHRARRKKEMVRNPLDEISGIGPGRKRSLLQHFGTAKAVSRAGLNDLMTVTG 623 Query: 595 ISKKIACKIYNHFHKNTSH 613 IS+ +A +IYNHFH++ S Sbjct: 624 ISETVARQIYNHFHESGSD 642 >gi|256369133|ref|YP_003106641.1| excinuclease ABC subunit C [Brucella microti CCM 4915] gi|255999293|gb|ACU47692.1| excinuclease ABC subunit C [Brucella microti CCM 4915] Length = 611 Score = 588 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 312/609 (51%), Positives = 419/609 (68%), Gaps = 5/609 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + G VLYVGKA NL+KR+ +Y H++RIT MI + + F VT Sbjct: 2 KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 61 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T H+ P ++KHR + + +G YFG Sbjct: 62 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 121 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TIN+LQR F LR+C DSVF RTRPCLL+QIKRCS PCT EIS E Y Sbjct: 122 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 181 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + ++K+ +A M A+ D+E A ++RDRLAALSH+Q+H Sbjct: 182 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 241 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ + CIQ FF GQN G +F K DS A++L FL QFY DKPCP Sbjct: 242 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 301 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +LLSE EE SL+ + + G+KV+++VP++GEK+++++ AL NA + ++L+ Sbjct: 302 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 361 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ + F LP P+RIE+YDNSHIMG +AVG M+V G GFVKNQYRKFN+ Sbjct: 362 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 421 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 D+ DD MMR V+ERRFS+L+K + + +FP+WPDV+++DGG+GQ+ A + Sbjct: 422 DITPGDDFGMMREVIERRFSRLVKEHGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 480 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 +L ++ + + +T I IAKG R AG E+FF++ + L RDP+LYFIQRLRDEAHRF Sbjct: 481 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 540 Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI THR RRKK +PLDEI GIGP RKR LL FGT K +SR++ E L I+GIS+ + Sbjct: 541 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 600 Query: 600 ACKIYNHFH 608 A I++HF Sbjct: 601 ARAIHDHFR 609 >gi|75497050|sp|Q57E41|UVRC_BRUAB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|62195793|gb|AAX74093.1| UvrC, excinuclease ABC, C subunit [Brucella abortus bv. 1 str. 9-941] Length = 627 Score = 587 bits (1514), Expect = e-165, Method: Composition-based stats. Identities = 313/609 (51%), Positives = 418/609 (68%), Gaps = 5/609 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + G VLYVGKA NL+KR+ +Y H++RIT MI + + F VT Sbjct: 18 KRLPNNPGVYRMFNSDGGVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 77 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T H+ P ++KHR + + +G YFG Sbjct: 78 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 137 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TIN+LQR F LR+C DSVF RTRPCLL+QIKRCS PCT EIS E Y Sbjct: 138 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 197 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + ++K+ +A M A+ D+E A ++RDRLAALSH+Q+H Sbjct: 198 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 257 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ + CIQ FF GQN G +F K DS A++L FL QFY DKPCP Sbjct: 258 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 317 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +LLSE EE SL+ + + G+KV+++VP++GEK+++++ AL NA + ++L+ Sbjct: 318 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 377 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ + F LP P+RIE+YDNSHIMG +AVG M+V G GFVKNQYRKFN+ Sbjct: 378 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 437 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 D+ DD MMR V+ERRFS+L+K K +FP+WPDV+++DGG+GQ+ A + Sbjct: 438 DITPGDDFGMMREVIERRFSRLVKEH-GTPAGEVKNPDAFPAWPDVILIDGGQGQVGAVR 496 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 +L ++ + + +T I IAKG R AG E+FF++ + L RDP+LYFIQRLRDEAHRF Sbjct: 497 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 556 Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI THR RRKK +PLDEI GIGP RKR LL FGT K +SR++ E L I+GIS+ + Sbjct: 557 AIGTHRARRKKEIVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 616 Query: 600 ACKIYNHFH 608 A I++HF Sbjct: 617 ARAIHDHFR 625 >gi|254503952|ref|ZP_05116103.1| excinuclease ABC, C subunit [Labrenzia alexandrii DFL-11] gi|222440023|gb|EEE46702.1| excinuclease ABC, C subunit [Labrenzia alexandrii DFL-11] Length = 656 Score = 587 bits (1513), Expect = e-165, Method: Composition-based stats. Identities = 300/624 (48%), Positives = 405/624 (64%), Gaps = 19/624 (3%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+MLD G VLYVGKA +L+KR+ SY ++RI MI + F VT Sbjct: 34 KRLPNGPGVYRMLDENGEVLYVGKARSLKKRVTSYTRLQGQSNRIMRMILVTTAMEFVVT 93 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKR +PRFN+LLRDDKSFPYIL+T H+ A+ KHR + +G YFG Sbjct: 94 NTEPEALLLEANLIKRFRPRFNVLLRDDKSFPYILVTGDHESAAIVKHRGARKRKGDYFG 153 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV++TIN+LQ+ F +R+C+DS + +RTRPCL +QIKRC+GPCTGEI+ E Y Sbjct: 154 PFASAGAVDRTINALQKAFLIRTCSDSYYENRTRPCLQYQIKRCAGPCTGEIAPEDYAGL 213 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + +KE++A M A+ ++E A I+RDRLAALSH+Q H + Sbjct: 214 VSEAKAFLSGRSQLIKEQLASQMETASADLEFERAAIYRDRLAALSHVQAHQGINPQTVD 273 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ +C+Q FF GQN G +F K D A IL FL QFY DKP P Sbjct: 274 EADVFAIHQEGGQSCVQVFFFRTGQNWGNRAYFPKADKSWDEADILESFLAQFYDDKPAP 333 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + ILLS E LL + ++ KV++TVPK+GEK++++ A+ NA + ++L+ Sbjct: 334 KQILLSHPLGEQELLGEALSERMSRKVEVTVPKRGEKKELVLHAMTNAREALGRRLAETS 393 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +LK + F L P+RIE+YDNSHIMG +AVG M+V G GF K YRKFN+ Sbjct: 394 SQARLLKGVAEAFDLATPPRRIEVYDNSHIMGTNAVGGMIVAGPEGFAKAHYRKFNIKSE 453 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPS--------------WPDV 466 D+ DD MMR VL RRFS+L+K + P WPD+ Sbjct: 454 DLVPGDDYGMMREVLTRRFSRLMKEHARPEGSKTSKPTDTPEAEEADAPVNTDVPAWPDL 513 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526 V++DGG+GQL+AA+ L++L + + + ++ IAKGP R AG EKFF+ + +L RDP+ Sbjct: 514 VLIDGGQGQLTAARETLEELGLTD-VPLVGIAKGPDRDAGREKFFITGKPSFMLPERDPV 572 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 LYF+QRLRDEAHRFAI +HR RRKK +PLDEI G+GP RK+ LL FGT K +S++ Sbjct: 573 LYFVQRLRDEAHRFAIGSHRARRKKDIAKNPLDEIAGVGPTRKKALLSHFGTAKAVSKAG 632 Query: 586 PETLASIEGISKKIACKIYNHFHK 609 + LA++ GIS+ IA +Y+HFH+ Sbjct: 633 VDDLAAVPGISEAIARLVYDHFHE 656 >gi|170751775|ref|YP_001758035.1| excinuclease ABC, C subunit [Methylobacterium radiotolerans JCM 2831] gi|170658297|gb|ACB27352.1| excinuclease ABC, C subunit [Methylobacterium radiotolerans JCM 2831] Length = 688 Score = 587 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 283/624 (45%), Positives = 380/624 (60%), Gaps = 21/624 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+M D G VLYVGKA NL+ R+ SY H++RI MISQ + F T Sbjct: 63 TLPSSPGVYRMFDHRGDVLYVGKAKNLKARVGSYARGQAHSNRIARMISQTAAMEFVTTA 122 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLEAN+IK+LKPRFN+L+RDDKSFPYIL+TD P + KHR + +G+Y+GP Sbjct: 123 TETEALLLEANLIKQLKPRFNVLMRDDKSFPYILVTDDGPAPQIVKHRGARRRKGNYYGP 182 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 FASV AV +T+N+LQR F LR+C DS + +RTRPCLL+QIKRCSGPCT EI E Y Sbjct: 183 FASVWAVNRTVNALQRAFLLRTCTDSYYENRTRPCLLYQIKRCSGPCTNEIGPEDYAAMA 242 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241 A+ FL+G ++ +K+++ M A+ ++E A RDR+AALS IQ Sbjct: 243 DSARAFLAGKSNAVKDRMRAEMQAASEAMEFERAARFRDRIAALSAIQGVQGVNTQGVEE 302 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D F+L CI+ FF QN G +F K D T ++L F+ QFY DKP P Sbjct: 303 ADVFALDEQAGQFCIEVFFFRNFQNWGNRAYFPKADRTMTPDEVLGSFIGQFYDDKPAPR 362 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 +L S E+ L+ + + Y+V+I P +GE++ +++ A NA + ++L+ S Sbjct: 363 TVLTSHAIEDAELVAAALSSRVEYRVEIHRPSRGERKNLVDYAQRNAKEALARRLADTAS 422 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 +L + F L P+RIE+YDNSHIMG +AVG M+V G GF+K YR FN+ D Sbjct: 423 QGKLLAALGQAFGLDGAPRRIEVYDNSHIMGTNAVGGMIVAGPTGFMKAHYRTFNIKSED 482 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFH----------------PKKQEYSFPSWPD 465 + DD MMR VL+RRF +L+K P ++ +FP+WPD Sbjct: 483 LTPGDDYGMMREVLQRRFKRLVKEAPRTEREAAASAGEGDVPEPVPAPAEESDAFPAWPD 542 Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525 +V++DGGKGQL AA+ L+++ V + ++ +AKG R AG E FFV L RDP Sbjct: 543 LVLIDGGKGQLEAARAALEEVGVAG-VPLVGVAKGRDRDAGRETFFVPGRPPFKLPPRDP 601 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 LYF+QRLRDEAHRFAI +HR +RK+ +PLDEI GIGP RKR LL FGTVK I R+ Sbjct: 602 TLYFVQRLRDEAHRFAIGSHRAKRKREMVKNPLDEIAGIGPSRKRALLHHFGTVKAIQRA 661 Query: 585 SPETLASIEGISKKIACKIYNHFH 608 + E LA G++ A +Y+ FH Sbjct: 662 AFEDLARTPGVNAATARAVYDFFH 685 >gi|319784398|ref|YP_004143874.1| excinuclease ABCsubunit C [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170286|gb|ADV13824.1| excinuclease ABC, C subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 687 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 316/621 (50%), Positives = 423/621 (68%), Gaps = 14/621 (2%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M++ AG VLYVGKA +L+KR+ +Y HT RI M+ + + + F VT Sbjct: 67 KRLPNAPGVYRMMNAAGDVLYVGKARSLKKRVTNYAQGRFHTTRIGRMVRETSTMEFVVT 126 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE+EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T H P +YKHR + + +G YFG Sbjct: 127 RTEIEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGDHVSPGIYKHRGARSRKGDYFG 186 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TINSLQR F LRSC +S + +RTRPCLL+QIKRC+GPCTGE+S + Y E Sbjct: 187 PFASAGAVGRTINSLQRAFLLRSCTNSFYENRTRPCLLYQIKRCAGPCTGEVSHQDYAEL 246 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V+EAK FLSG + +K +I+ M QA+ D+E A I+RDRLAALSH+Q+H + Sbjct: 247 VNEAKDFLSGRSQKVKTEISAAMQQASEALDFERAAIYRDRLAALSHVQSHQGINPATVD 306 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ CIQ FF GQN G +F K D A++L FL QFY DKP P Sbjct: 307 EADVFAIHQEGGQVCIQVFFFRTGQNWGNRAYFPKADPALEAAEVLGSFLAQFYDDKPTP 366 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 NILLS E+ LL + + G KV I+VP++GEK+ + + AL NA + ++L+ Sbjct: 367 RNILLSHGVEDQELLAEALSTRAGRKVAISVPQRGEKKDLTDNALQNAREALGRRLAETS 426 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 + +L F + F LP P RIE+YDNSHIMG +AVG MVV G GFVKNQYRKFN+ Sbjct: 427 TQGRLLAGFAETFGLPKPPVRIEVYDNSHIMGTNAVGAMVVAGPEGFVKNQYRKFNIRST 486 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQ----------EYSFPSWPDVVILD 470 ++ DD MMR V+ERRFS+L+K ++ SFP+WPDV+++D Sbjct: 487 EITPGDDFGMMREVMERRFSRLLKEHGDVPAGDAADGSADDMEDDISGSFPAWPDVILID 546 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GG+GQ++A + +L L +E+R+ I IAKG R AG E+FFVK ++ L +RDP+LYF+ Sbjct: 547 GGQGQMTAVRKILADLGIEDRVVAIGIAKGQDRDAGRERFFVKGRDSFSLPVRDPVLYFV 606 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 QRLRDE HRFAI +HR RRKK SPLDEI+GIGP RKR LL +FGT K +SR++ E L Sbjct: 607 QRLRDEVHRFAIGSHRARRKKEMVKSPLDEISGIGPGRKRALLLAFGTAKAVSRAAIEDL 666 Query: 590 ASIEGISKKIACKIYNHFHKN 610 ++GIS+++A +YNHFH++ Sbjct: 667 RKVDGISEQVAKLVYNHFHES 687 >gi|328542834|ref|YP_004302943.1| excinuclease ABC subunit C [polymorphum gilvum SL003B-26A1] gi|326412580|gb|ADZ69643.1| excinuclease ABC subunit C [Polymorphum gilvum SL003B-26A1] Length = 664 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 300/616 (48%), Positives = 403/616 (65%), Gaps = 12/616 (1%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+MLD G VLYVGKA +L+KR+ SY ++RI MI + F +T Sbjct: 49 KRLPMGPGVYRMLDENGDVLYVGKARSLKKRVTSYTRLQGQSNRILRMIMATAAMEFVLT 108 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+LLRDDKSFPYIL+T H PA+ KHR + +G YFG Sbjct: 109 RTETEALLLEANLIKRLRPRFNVLLRDDKSFPYILLTADHAAPAIVKHRGARKRKGDYFG 168 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TIN+LQ+ F +R+C+DS F +R+RPCLL+QIKRC+GPCTGE E Y Sbjct: 169 PFASAGAVNRTINALQKAFLIRNCSDSYFENRSRPCLLYQIKRCAGPCTGETGPEDYAGL 228 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EA+ FLSG + +K+ +A M A + D+E A ++RDRLAALSH+Q H Sbjct: 229 VAEARAFLSGRSQLVKKDLAAQMEAAAEQLDFEQAAVYRDRLAALSHVQAHQGINPQGVE 288 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ + C+Q FF GQN G +F K D A +L FL QFY DKP P Sbjct: 289 EADVFAVHQDGGQTCVQVFFFRTGQNWGNRAYFPKADKSLDEAAVLESFLAQFYDDKPAP 348 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 ILLS EE LL + ++ KV+++VP++GEK+ +++ AL NA + ++L+ Sbjct: 349 RLILLSHAIEEQDLLARALSERSNRKVEVSVPRRGEKKALVDHALTNAREALGRRLAETS 408 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ K F L P+RIE+YDNSHIMG +AVG M+V G GF K QYRKFN+ Sbjct: 409 SQARLLEGVAKVFGLAAPPRRIEVYDNSHIMGTNAVGAMIVAGPEGFAKGQYRKFNIRSQ 468 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQ-------EYSFPSWPDVVILDGGK 473 ++ DD MMR VL RRFS+L+K + + P+WPD+V++DGG+ Sbjct: 469 ELTPGDDYGMMREVLTRRFSRLLKEHQRPGAEVADEALAGAAGASDVPAWPDLVLIDGGQ 528 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 GQL+A + +L L V + + + IAKGP R AG EKFF++ + +L RDP+LYF+QRL Sbjct: 529 GQLNAVRDILADLGVTD-VPLAGIAKGPDRDAGREKFFMEGRPSFMLPERDPVLYFVQRL 587 Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDEAHRFAI +HR RRKK +PLDEI GIGP RKR LL+ FGT K +S++ E L ++ Sbjct: 588 RDEAHRFAIGSHRARRKKDIARNPLDEIAGIGPTRKRALLRHFGTAKAVSKAGIEDLVAV 647 Query: 593 EGISKKIACKIYNHFH 608 GIS+ +A +IY+HFH Sbjct: 648 AGISEAVAKQIYDHFH 663 >gi|170740870|ref|YP_001769525.1| excinuclease ABC, C subunit [Methylobacterium sp. 4-46] gi|168195144|gb|ACA17091.1| excinuclease ABC, C subunit [Methylobacterium sp. 4-46] Length = 668 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 291/612 (47%), Positives = 387/612 (63%), Gaps = 6/612 (0%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+MLD G VLYVGKA NL+ R+ SY H++RI MI++ ++ F T Sbjct: 58 TLPPSPGVYRMLDAKGDVLYVGKAKNLKNRVGSYARGQAHSNRIARMIAETASMEFVTTV 117 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLEAN+IK+LKPRFN+L+RDDKS PYIL+T + P L KHR + G YFGP Sbjct: 118 TETEALLLEANLIKQLKPRFNVLMRDDKSLPYILLTADTEAPQLVKHRGARRRPGHYFGP 177 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 FASV AV +T+N+LQR F LRSC+DS + +R+RPCLL+QIKRCSGPCTGEI+ Y Sbjct: 178 FASVWAVNRTVNALQRAFLLRSCSDSYYENRSRPCLLYQIKRCSGPCTGEIAPADYALLA 237 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241 EA+ FLSG + ++KE++A +M A ++E A +RDR+AAL+ IQ Sbjct: 238 DEARAFLSGKSTSVKERLAADMQAAAEAWEFEKAARYRDRIAALAAIQGVQGVNTQDIEE 297 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D F+L CI+ FF QN G +F K D + +++L F+ QFY DKP P Sbjct: 298 ADVFALDEQAGQFCIEVFFFRNWQNWGNRAYFPKADRSMSASEVLGSFIGQFYDDKPAPR 357 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 IL+S E E+ LL + + +V+I PK+GE++ +I+ A NA + ++L+ S Sbjct: 358 LILVSHEIEDAELLAAALSTRIDARVEIHQPKRGERKNLIDYAARNAREALARRLADTAS 417 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 +L + F LP P+R+E+YDNSHIMG +AVG MVV G GF+K YR F + D Sbjct: 418 QGKLLAALGQAFGLPRPPRRVEVYDNSHIMGTNAVGAMVVAGPTGFMKTHYRTFTIKSPD 477 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE-YSFPSWPDVVILDGGKGQLSAAQ 480 VK DD MMR VL RRF++L+K + + +FP+WPD+V++DGGKGQL AA+ Sbjct: 478 VKPGDDFGMMREVLHRRFARLVKEAPRQEGEAEPADADAFPAWPDLVLIDGGKGQLEAAR 537 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 L ++ V + ++ IAKG R AG E FFV+ L RDP LYF+QRLRDEAHRF Sbjct: 538 AALAEVGVTG-VPLVGIAKGRDRDAGRETFFVEGQPPFKLPPRDPTLYFVQRLRDEAHRF 596 Query: 541 AITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI HR +RK+ +PLDEI GIGP RKR LL FGTVK I R++ E LA G++ Sbjct: 597 AIGAHRAKRKRELVKNPLDEIPGIGPTRKRALLHHFGTVKAIERAALEDLAKTPGVNAAT 656 Query: 600 ACKIYNHFHKNT 611 A +Y+ FH N Sbjct: 657 ARAVYDFFHANA 668 >gi|38258822|sp|Q8YGA9|UVRC_BRUME RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|90111059|sp|Q2YN35|UVRC_BRUA2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|82615689|emb|CAJ10676.1| Excinuclease ABC, C subunit, N-terminal:Helix-hairpin-helix motif:Excinuclease ABC, C subunit, C-terminal:UvrB/UvrC protein:H [Brucella melitensis biovar Abortus 2308] Length = 611 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 313/609 (51%), Positives = 418/609 (68%), Gaps = 5/609 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + G VLYVGKA NL+KR+ +Y H++RIT MI + + F VT Sbjct: 2 KRLPNNPGVYRMFNSDGGVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 61 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T H+ P ++KHR + + +G YFG Sbjct: 62 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 121 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TIN+LQR F LR+C DSVF RTRPCLL+QIKRCS PCT EIS E Y Sbjct: 122 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 181 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + ++K+ +A M A+ D+E A ++RDRLAALSH+Q+H Sbjct: 182 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 241 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ + CIQ FF GQN G +F K DS A++L FL QFY DKPCP Sbjct: 242 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 301 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +LLSE EE SL+ + + G+KV+++VP++GEK+++++ AL NA + ++L+ Sbjct: 302 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 361 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ + F LP P+RIE+YDNSHIMG +AVG M+V G GFVKNQYRKFN+ Sbjct: 362 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 421 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 D+ DD MMR V+ERRFS+L+K K +FP+WPDV+++DGG+GQ+ A + Sbjct: 422 DITPGDDFGMMREVIERRFSRLVKEH-GTPAGEVKNPDAFPAWPDVILIDGGQGQVGAVR 480 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 +L ++ + + +T I IAKG R AG E+FF++ + L RDP+LYFIQRLRDEAHRF Sbjct: 481 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 540 Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI THR RRKK +PLDEI GIGP RKR LL FGT K +SR++ E L I+GIS+ + Sbjct: 541 AIGTHRARRKKEIVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 600 Query: 600 ACKIYNHFH 608 A I++HF Sbjct: 601 ARAIHDHFR 609 >gi|38258795|sp|Q8G1L5|UVRC_BRUSU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|23347500|gb|AAN29628.1| excinuclease ABC, C subunit [Brucella suis 1330] Length = 611 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 311/609 (51%), Positives = 418/609 (68%), Gaps = 5/609 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + G VLYVGKA NL+KR+ +Y H++RIT MI + + F VT Sbjct: 2 KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 61 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKR +PRFN+L+RDDKSFPYIL+T H+ P ++KHR + + +G YFG Sbjct: 62 RTETEALLLEANLIKRSRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 121 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TIN+LQR F LR+C DSVF RTRPCLL+QIKRCS PCT EIS E Y Sbjct: 122 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 181 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + ++K+ +A M A+ D+E A ++RDRLAALSH+Q+H Sbjct: 182 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 241 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ + CIQ FF GQN G +F K DS A++L FL QFY DKPCP Sbjct: 242 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 301 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +LLSE EE SL+ + + G+KV+++VP++GEK+++++ AL NA + ++L+ Sbjct: 302 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 361 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ + F LP P+RIE+YDNSHIMG +AVG M+V G GFVKNQYRKFN+ Sbjct: 362 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 421 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 D+ DD MMR V+ERRFS+L+K + + +FP+WPDV+++DGG+GQ+ A + Sbjct: 422 DITPGDDFGMMREVIERRFSRLVKEHGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 480 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 +L ++ + + +T I IAKG R AG E+FF++ + L RDP+LYFIQRLRDEAHRF Sbjct: 481 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 540 Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI THR RRKK +PLDEI GIGP RKR LL FGT K +SR++ E L I+GIS+ + Sbjct: 541 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 600 Query: 600 ACKIYNHFH 608 A I++HF Sbjct: 601 ARAIHDHFR 609 >gi|260469598|ref|ZP_05813763.1| excinuclease ABC, C subunit [Mesorhizobium opportunistum WSM2075] gi|259028624|gb|EEW29935.1| excinuclease ABC, C subunit [Mesorhizobium opportunistum WSM2075] Length = 684 Score = 585 bits (1507), Expect = e-165, Method: Composition-based stats. Identities = 313/618 (50%), Positives = 422/618 (68%), Gaps = 11/618 (1%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M++ AG VLYVGKA +L+KR+ +Y HT+RI M+ + + + F VT Sbjct: 67 KRLPNAPGVYRMMNAAGDVLYVGKARSLKKRVTNYAQGRFHTNRIGRMVRETSTMEFVVT 126 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE+EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T H P +YKHR + + +G YFG Sbjct: 127 RTEIEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGDHISPGIYKHRGARSRKGDYFG 186 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TINSLQR F LRSC +S + +R+RPCLL+QIKRC+GPCTGEIS E Y E Sbjct: 187 PFASAGAVGRTINSLQRAFLLRSCTNSFYENRSRPCLLYQIKRCAGPCTGEISHEGYAEL 246 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + +K +I+ M QA+ D+E A I+RDRLAAL+H+Q+H + Sbjct: 247 VEEAKDFLSGRSQKVKTEISAAMQQASEDLDFERAAIYRDRLAALAHVQSHQGINPATVD 306 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ CIQ FF GQN G +F K D +++L FL QFY DKP P Sbjct: 307 EADVFAIHQEGGQVCIQVFFFRTGQNWGNRAYFPKADPALEGSEVLGSFLAQFYDDKPTP 366 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 ILLS+ E+ LL + + G KV I+VP++GEK+ + + AL NA + ++L+ Sbjct: 367 RAILLSQTVEDQELLAEALSTRAGRKVAISVPQRGEKKDLTDNALQNAREALGRRLAETS 426 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 + +L F + F L P RIE+YDNSHIMG +AVG MVV G GFVKNQYRKFN+ Sbjct: 427 TQGRLLAGFAETFGLAKPPVRIEVYDNSHIMGTNAVGAMVVAGPEGFVKNQYRKFNIRST 486 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQ-------EYSFPSWPDVVILDGGK 473 ++ DD MMR V+ERRFS+L+K ++ + SFP+WPDV+++DGG+ Sbjct: 487 EITPGDDFGMMREVMERRFSRLLKEHGDVKPDDVTEAADEDDISGSFPAWPDVILIDGGQ 546 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 GQ++A + +L L +E+R+ I IAKG R AG E+FFVK ++ L +RDP+LYF+QRL Sbjct: 547 GQMTAVRKILSDLGIEDRVVAIGIAKGQDRDAGRERFFVKGRDSFSLPVRDPVLYFVQRL 606 Query: 534 RDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDE HRFAI +HR RRKK SPLDEI+GIGP RKR LL FGT K +SR++ E L + Sbjct: 607 RDEVHRFAIGSHRARRKKEMVKSPLDEISGIGPGRKRALLLHFGTAKAVSRAAIEDLRKV 666 Query: 593 EGISKKIACKIYNHFHKN 610 +GIS+++A +YNHFH++ Sbjct: 667 DGISEQVAKLVYNHFHES 684 >gi|220923621|ref|YP_002498923.1| excinuclease ABC subunit C [Methylobacterium nodulans ORS 2060] gi|219948228|gb|ACL58620.1| excinuclease ABC, C subunit [Methylobacterium nodulans ORS 2060] Length = 668 Score = 585 bits (1507), Expect = e-164, Method: Composition-based stats. Identities = 289/612 (47%), Positives = 389/612 (63%), Gaps = 6/612 (0%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+MLD G VLYVGKA NL+ R+ SY H++RI MI++ ++ F T Sbjct: 58 TLPPSPGVYRMLDAKGDVLYVGKAKNLKNRVGSYARGQAHSNRIARMIAETASMEFVTTA 117 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLEAN+IK+LKPRFN+L+RDDKS PYIL+T + P L KHR + G YFGP Sbjct: 118 TETEALLLEANLIKQLKPRFNVLMRDDKSLPYILLTADTEAPQLVKHRGARRRPGHYFGP 177 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 FASV AV +T+N+LQR F LRSC+DS + +RTRPCLLFQIKRCSGPCTGEI+ + Y Sbjct: 178 FASVWAVNRTVNALQRAFLLRSCSDSYYENRTRPCLLFQIKRCSGPCTGEIAPQDYAALA 237 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241 EA+ FLSG ++++KE++A +M A ++E A +RDR+AAL+ IQ Sbjct: 238 DEARAFLSGKSNSVKERLAADMQAAADAWEFEKAARYRDRIAALAAIQGVQGVNTQDIEE 297 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D F+L CI+ FF QN G +F K D T +++L F+ QFY DKP P Sbjct: 298 ADVFALDEQAGQFCIEVFFFRNWQNWGNRAYFPKADRTMTASEVLGSFIGQFYDDKPAPR 357 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 IL+S E+ LL + + +V+I PK+GE++ +I+ A NA + ++L+ S Sbjct: 358 LILVSHAIEDAELLAAALSTRTDSRVEIHAPKRGERKNLIDYAARNAKEALGRRLADTAS 417 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 +L + F L P+RIE+YDNSHIMG +AVG M+V G GF+K YR F + + Sbjct: 418 QAKLLAALGQAFGLKRAPRRIEVYDNSHIMGTNAVGAMIVAGPTGFMKTHYRTFTIKSQE 477 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE-YSFPSWPDVVILDGGKGQLSAAQ 480 V+ DD MMR VL RRFS+L+K + + + +FP+WPD+V++DGGKGQL AA+ Sbjct: 478 VRPGDDYGMMREVLHRRFSRLVKEAPRRDGAEEPADADAFPAWPDLVLIDGGKGQLEAAR 537 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 L ++ V + + ++ IAKG R AG E FF++ L RDP LYF+QRLRDEAHRF Sbjct: 538 AALAEIGVTD-VPLVGIAKGRDRDAGRETFFMEGQPPFKLPPRDPTLYFVQRLRDEAHRF 596 Query: 541 AITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI HR +RK+ +PLDEI GIGP RKR LL FGTVK I R++ E L+ G++ Sbjct: 597 AIGAHRAKRKRELVKNPLDEIPGIGPTRKRALLHHFGTVKAIERAALEDLSRTPGVNAAT 656 Query: 600 ACKIYNHFHKNT 611 A +Y+ FH N Sbjct: 657 ARAVYDFFHANA 668 >gi|13476555|ref|NP_108125.1| excinuclease ABC subunit C [Mesorhizobium loti MAFF303099] gi|81776470|sp|Q984P3|UVRC_RHILO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|14027316|dbj|BAB54270.1| excinuclease ABC subunit C [Mesorhizobium loti MAFF303099] Length = 688 Score = 583 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 318/622 (51%), Positives = 421/622 (67%), Gaps = 15/622 (2%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M++ AG VLYVGKA +L+KR+ +Y HT+RI M+ + + + F VT Sbjct: 67 KRLPNAPGVYRMMNAAGDVLYVGKARSLKKRVTNYAQGRFHTNRIGRMVRETSTMEFVVT 126 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE+EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T H P +YKHR + + +G YFG Sbjct: 127 RTEIEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGDHVSPGIYKHRGARSRKGDYFG 186 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TINSLQR F LRSC +S + +RTRPCLL+QIKRC+GPCTGEIS E Y E Sbjct: 187 PFASAGAVGRTINSLQRAFLLRSCTNSFYENRTRPCLLYQIKRCAGPCTGEISHEGYAEL 246 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + +K +I+ M QA+ D+E A I+RDRLAALSH+Q+H + Sbjct: 247 VAEAKDFLSGRSQKVKTEISAAMQQASEDLDFERAAIYRDRLAALSHVQSHQGINPATVD 306 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ CIQ FF GQN G +F K D A++L FL QFY DKP P Sbjct: 307 EADVFAIHQEGGQVCIQVFFFRTGQNWGNRAYFPKADPALEAAEVLGSFLAQFYDDKPTP 366 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 NILLS E+ LL + + G KV I+VP++GEK+ + + AL NA + ++L+ Sbjct: 367 RNILLSRGVEDQELLGEALSTRAGRKVTISVPQRGEKKDLTDNALQNAREALGRRLAETS 426 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 + +L F + F L P RIE+YDNSHIMG +AVG MVV G GFVKNQYRKFN+ Sbjct: 427 TQGRLLAGFAETFGLAKPPVRIEVYDNSHIMGTNAVGAMVVAGPEGFVKNQYRKFNIRST 486 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNE-----------ENLNFHPKKQEYSFPSWPDVVIL 469 ++ DD MMR V+ERRFS+L+K E + SFP+WPDV+++ Sbjct: 487 EITPGDDFGMMREVMERRFSRLLKEHGDVAPNDAASAEAGDDIEDDISGSFPAWPDVILI 546 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGG+GQ++A + +L L +E+R+ I IAKG R AG E+FFVK ++ L +RDP+LYF Sbjct: 547 DGGQGQMTAVRKILADLGIEDRVVAIGIAKGQDRDAGRERFFVKGRDSFSLPVRDPVLYF 606 Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 +QRLRDE HRFAI +HR RRKK SPLDEI GIGP RKR LL +FGT K +SR++ E Sbjct: 607 VQRLRDEVHRFAIGSHRARRKKEMVKSPLDEIAGIGPGRKRALLLAFGTAKAVSRAAIED 666 Query: 589 LASIEGISKKIACKIYNHFHKN 610 L ++GIS+++A +YNHFH++ Sbjct: 667 LRKVDGISEQVAKLVYNHFHES 688 >gi|220935076|ref|YP_002513975.1| excinuclease ABC subunit C [Thioalkalivibrio sp. HL-EbGR7] gi|219996386|gb|ACL72988.1| excinuclease ABC subunit C [Thioalkalivibrio sp. HL-EbGR7] Length = 609 Score = 582 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 231/609 (37%), Positives = 345/609 (56%), Gaps = 22/609 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY+ML AG VLYVGKA +L+KR+ SY SN + RI M+SQI+NI TVT Sbjct: 18 TLTHRPGVYRMLGGAGEVLYVGKAKDLKKRVASYFRSNVSSARIRSMVSQIHNIEVTVTR 77 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLE+N+IK +PR+N+LLRDDKS+PYIL+T H P L HR + G YFGP Sbjct: 78 TEAEALLLESNLIKEHRPRYNVLLRDDKSYPYILVT-DHAFPRLTFHRGARKPGGRYFGP 136 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + S AV +T+N LQ+ F +R C DS F++R+RPCL +QI+RC+ PC G ++ Y + V Sbjct: 137 YPSAGAVRETLNLLQKLFLVRQCEDSFFQNRSRPCLQYQIRRCTAPCVGLVNEATYRQDV 196 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRM 242 A +FL G + + + M QA+ + +E A +RD++ L I + Sbjct: 197 EHAVQFLEGKSEAVIRDLVVRMEQASERLAFEEAARYRDQITRLRQISEQQYISGAGGDV 256 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D + + AC+Q F G + G F +++ +++S FL Q+Y + P Sbjct: 257 DIIACHQASGQACVQVFFVRGGHHLGNKALFPSVPEDTSAEELISAFLAQYYLSREVPAE 316 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 I+LS E+ +L ++ G V ++ +GE+ + +E A NA + +L++ Sbjct: 317 IILSHVPEDAEVLTEVLGERRGRAVSLSWNVRGERARWLEMAERNAELALRTRLASRAGM 376 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 + L+ + L +P R+E +D SH G V VV G VK+ YR+FN+ + Sbjct: 377 RERLEALAEALDLDELPSRMECFDISHTQGELTVASCVVFDAEGPVKSDYRRFNIEG--I 434 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD A MR L+RR+++L + E PDV+ +DGGKGQ+ A V Sbjct: 435 TPGDDYAAMRQALQRRYTRLKEGE--------------GRLPDVLFIDGGKGQVRQALEV 480 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFA 541 L++L V+ + AKG R G+E + E +L L+ IQ++RDEAHRFA Sbjct: 481 LEELQVQGVSVVGV-AKGADRKPGLETLVLSDSERPTILPPGSSALHLIQQIRDEAHRFA 539 Query: 542 ITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 IT HR+RR KA SPL++I G+GP R++ LL+ FG ++ +SR+ L+ + GIS+K+A Sbjct: 540 ITGHRQRRAKARTASPLEQIPGMGPKRRQQLLKHFGGLRGVSRAGVAELSKVPGISRKLA 599 Query: 601 CKIYNHFHK 609 +IY+ FH+ Sbjct: 600 QQIYDSFHE 608 >gi|91776156|ref|YP_545912.1| excinuclease ABC subunit C [Methylobacillus flagellatus KT] gi|119367669|sp|Q1H0B6|UVRC_METFK RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|91710143|gb|ABE50071.1| Excinuclease ABC subunit C [Methylobacillus flagellatus KT] Length = 599 Score = 581 bits (1498), Expect = e-163, Method: Composition-based stats. Identities = 222/611 (36%), Positives = 335/611 (54%), Gaps = 24/611 (3%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PGVY+M++ V+YVGKA +L+KR+ SY N + R M+S I I TV Sbjct: 8 LKNLPNLPGVYRMINAQDEVIYVGKARDLKKRVSSYFQKNLPSARTRLMVSNIARIETTV 67 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EALLLE N+IK PR+N+L RDDKS+PYI +T P L HR + SYF Sbjct: 68 TRSEAEALLLENNLIKGFMPRYNVLFRDDKSYPYIALT-GDTFPRLAFHRGAQRKGSSYF 126 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF + AV ++I LQ+ F LR+C ++VF +R+RPCLL QI+RC+ PC G IS E Y Sbjct: 127 GPFPNAVAVRESIQLLQKVFRLRTCENTVFANRSRPCLLHQIERCTAPCVGFISEEDYRR 186 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IY 239 V A FL G + +++ MN+A K +YE A ++RDR+ +L +Q Sbjct: 187 DVMHASLFLQGKEQQVMDELGEKMNEAAEKMEYELAAVYRDRIQSLRQVQAKQFVSDFNV 246 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 + D + + C+ G + G +FF K + + FL Q Y Sbjct: 247 SDADVIACAELEGQWCVNLVMIRGGHHLGDKSFFPKNADGADLETTMEAFLEQHYMAGAI 306 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P +++ E +L E F +Q G +++I G+KR ++ A NA + +Q+++ + Sbjct: 307 PPLLIVGASLETAAL-EEVFSEQAGRRIRINTHPIGDKRVWLKMAHTNAQLALSQRIAQQ 365 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + Q L + LP +RIE +D SH MG + V VV + ++YR++N+ Sbjct: 366 ANQQSRLNALREALGLPESTERIECFDISHTMGEATVASCVVFDKGAMQSSEYRRYNI-- 423 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A MR VL RR+ ++ E PD+V +DGGKGQL A Sbjct: 424 TGITPGDDYAAMRDVLTRRYRKVAAGE--------------GKRPDLVFIDGGKGQLGVA 469 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQRLRDEAH 538 VL ++ + + I ++ IAKG +R G+E+ FF ++ E + L P L+ +Q++RDEAH Sbjct: 470 VEVLNEVGLPD-IQLVGIAKGEERKPGLEQMFFPEREEPVSLKKDHPGLHLLQQIRDEAH 528 Query: 539 RFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR +R KA +S L++I+GIG R++ LL FG + + +S + +A ++GIS Sbjct: 529 RFAITGHRAKRGKARMHSSLEDISGIGAKRRKSLLTRFGGLDGVKNASVDEIAQVDGISH 588 Query: 598 KIACKIYNHFH 608 +A KIY H Sbjct: 589 ALAQKIYEELH 599 >gi|83593555|ref|YP_427307.1| excinuclease ABC subunit C [Rhodospirillum rubrum ATCC 11170] gi|119367827|sp|Q2RS75|UVRC_RHORT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|83576469|gb|ABC23020.1| Excinuclease ABC subunit C [Rhodospirillum rubrum ATCC 11170] Length = 639 Score = 581 bits (1497), Expect = e-163, Method: Composition-based stats. Identities = 272/613 (44%), Positives = 375/613 (61%), Gaps = 14/613 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + MP PGVY+M+D G VLYVGKA NL++R+ +Y + RI MI+ + Sbjct: 36 ALRTMPSSPGVYRMIDGKGDVLYVGKARNLKRRVINYTQPHRLPVRIQRMIAATLTMEVL 95 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T TE EALLLE+N+IK+LKPR+NILLRDDKSFPYI IT H P + K R + G Y Sbjct: 96 TTHTEAEALLLESNLIKKLKPRYNILLRDDKSFPYIEITSDHAFPRIVKFRGTLRKGGEY 155 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPFAS AV T+ +LQ+TF LR+CAD+VF R+RPCLLFQIKRC+ PC ++ Y Sbjct: 156 FGPFASAGAVTSTLTALQKTFLLRTCADNVFASRSRPCLLFQIKRCAAPCVDRVAEADYK 215 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 V EA+ FLSG + L+ +A+ M++A DYE A I RDR+ AL+++Q+H D Sbjct: 216 ALVEEARAFLSGSSKALQHDLAKRMDEAAQALDYEQAAIFRDRIKALTNVQSHQDINLPT 275 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D + + C+Q FF G+N G +FF + ++L FL QFY P Sbjct: 276 LGEADVIACHQAGGQTCVQVFFFRGGRNNGNRSFFPAHAGDEGLPEVLEAFLGQFYAGFP 335 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P ILL + L+E + + G++V++ VP++G +RK+I+ AL NA + ++L+ Sbjct: 336 PPREILLLTDIPHHDLVEQALCLRAGHRVRLVVPRRGSRRKLIDHALANAREALGRRLAE 395 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + + +L+ F L +R+EIYDNSHI G AVG MVV G GF+K YRKFN+ Sbjct: 396 SSAQRTLLEGTAVAFGLDGPLQRVEIYDNSHISGTHAVGGMVVAGPEGFMKAAYRKFNIR 455 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 D+ DD AMMR V+ RRF++ K + + WPD+V++DGG GQL+A Sbjct: 456 SPDITPGDDYAMMREVMIRRFARARKED---------PDRDRGQWPDLVLIDGGLGQLNA 506 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 + L ++ VE+ + ++ +AKGP R AG E+FFV +L DP+LYFIQRLRDEAH Sbjct: 507 VREALAEIGVED-VPLVGVAKGPDRDAGRERFFVPGRPPFMLRHNDPVLYFIQRLRDEAH 565 Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAI +HR RR KA SPLD + GIG RK+ LL FG+ K +S++ L ++EGIS Sbjct: 566 RFAIGSHRTRRSKAIGVSPLDSVPGIGASRKKALLHHFGSAKAVSQAGLTDLEAVEGISA 625 Query: 598 KIACKIYNHFHKN 610 +A K+Y+HFH Sbjct: 626 ALAKKLYDHFHSE 638 >gi|91975761|ref|YP_568420.1| excinuclease ABC subunit C [Rhodopseudomonas palustris BisB5] gi|119367826|sp|Q13BM0|UVRC_RHOPS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|91682217|gb|ABE38519.1| Excinuclease ABC subunit C [Rhodopseudomonas palustris BisB5] Length = 695 Score = 581 bits (1497), Expect = e-163, Method: Composition-based stats. Identities = 295/607 (48%), Positives = 395/607 (65%), Gaps = 5/607 (0%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 P PGVY+ML+ A VLYVGKA N++KR+ SY H RI MI+ + T TE Sbjct: 87 PTSPGVYRMLNAADDVLYVGKAKNVKKRLSSYARPTGHVVRIARMIAATVTVEIISTATE 146 Query: 67 VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126 EALLLEAN+IK+L+PRFN+LLRDDKSFPYILIT H P + KHR + + G YFGPFA Sbjct: 147 TEALLLEANLIKQLRPRFNVLLRDDKSFPYILITGDHWAPQILKHRGAQSRPGRYFGPFA 206 Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186 SV AV +TI +LQR F +RSC DS F RTRPCLL+QI+RC+GPCTGE+ Y E V E Sbjct: 207 SVGAVNRTITALQRAFLVRSCTDSFFESRTRPCLLYQIRRCAGPCTGEVDFPGYTELVRE 266 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMD 243 A FLSG + +K+++A M +A+ + ++E+A ++RDRLAALS IQ+ D Sbjct: 267 ATDFLSGRSRAVKQELAVEMEKASNELEFETAALYRDRLAALSAIQSQQGINPRTVEEAD 326 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303 F+++ +C++ FF GQN G +F + + T ++L+ FL QFY DKP P+ I Sbjct: 327 VFAIHQEGGYSCVEVFFFRTGQNWGNRAYFPRAEKSFTPEEVLASFLAQFYDDKPPPKLI 386 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 LLS + EE LL + + G KV++ PK+GEK++++ AL NA + +KL+ + Sbjct: 387 LLSHDIEECELLANALCIKAGRKVEVAAPKRGEKKELVAHALTNAREALGRKLADTATQT 446 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 +++ LP P+RIE+YDNSHI G +AVG M+V G +GF+KNQYRKFN+ + Sbjct: 447 RLMQGLATTLGLPRPPQRIEVYDNSHIQGTNAVGAMIVAGPDGFIKNQYRKFNIRSEGLT 506 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD AMMR VL+RRF +L + K +E P WPD+VI+DGG+GQL+AA+GVL Sbjct: 507 PGDDYAMMREVLQRRFKRLAA-AKAEGDAAKPKEDDTPLWPDLVIIDGGRGQLNAARGVL 565 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 +L + +T++ +AKGP R AG E F+ + EA+ L RDP+LYFIQRLRDEAHRF I Sbjct: 566 TELGLGAEVTLLGVAKGPDRDAGRETLFMPEREAIKLEPRDPVLYFIQRLRDEAHRFVIG 625 Query: 544 THRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 +HRK RKK L EI GIGP RKR LL FGT+K I R+S L + GIS + A + Sbjct: 626 SHRKLRKKDIREAGLQEIPGIGPTRKRALLHHFGTLKEIERASIGDLGKVPGISAESARR 685 Query: 603 IYNHFHK 609 I++ FH Sbjct: 686 IFDFFHP 692 >gi|313200794|ref|YP_004039452.1| excinuclease ABC subunit C [Methylovorus sp. MP688] gi|312440110|gb|ADQ84216.1| excinuclease ABC, C subunit [Methylovorus sp. MP688] Length = 600 Score = 580 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 224/611 (36%), Positives = 329/611 (53%), Gaps = 23/611 (3%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PGVY+M++ V+YVGKA +L+KR+ SY N + R M+SQI I TV Sbjct: 8 LKNLPNLPGVYRMINAEDAVIYVGKARDLKKRVSSYFQKNLPSPRTRMMVSQIARIETTV 67 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EALLLE N+IK PR+N+L RDDKS+PYI +T P L HR + SYF Sbjct: 68 TRSEAEALLLENNLIKSFMPRYNVLFRDDKSYPYITLT-GDAFPRLAFHRGTQRKGNSYF 126 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF + AV ++I LQ+ F LR+C ++VF +R+RPCL +QI+RC+ PC IS E Y Sbjct: 127 GPFPNAVAVRESIQLLQKVFRLRTCENTVFANRSRPCLQYQIQRCTAPCVNFISEEDYQR 186 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IY 239 V A FL G + ++++ M QA +++YE A ++RDR+ +L +Q Sbjct: 187 DVSHATLFLQGREQQVMDELSHKMMQAAEEQEYEMAAVYRDRMQSLRQVQAKQFVSDFTI 246 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 + D + C+ G++ G + F K + FL Q Y + Sbjct: 247 SDADVIACAELHGQLCVNLVMIRGGRHLGDKSHFPKNAEGADARMTAEAFLEQHYMPQNT 306 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P I++ E ET+ LE +Q G KVKI G+KR ++ A NA + Q+ + Sbjct: 307 PPLIIVGVEGMETAELEEVLSEQAGRKVKINTNPIGDKRVWLKMAQTNAELALEQRSAAN 366 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + Q L + LP +RIE +D SH MG + V VV ++YR++N+ Sbjct: 367 ANQQARLVALREALDLPESTERIECFDISHTMGEATVASCVVFDRGAMQNSEYRRYNI-- 424 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A MR L RR+ ++ E PD+V +DGGKGQL A Sbjct: 425 TGITPGDDYAAMRDALTRRYKKVAAGE--------------GLLPDLVFIDGGKGQLGVA 470 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQRLRDEAH 538 V+ ++ + + I ++ IAKG +R G+E+ FF + + L P L+ +Q++RDEAH Sbjct: 471 VEVMHEVGLPD-IQLVGIAKGEERKPGLEQMFFPDRDTPVGLRNDHPGLHLLQQIRDEAH 529 Query: 539 RFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR RR KA +S L++I GIG R++ LL FG + + +S + LA +EGIS Sbjct: 530 RFAITGHRARRGKARMHSSLEDIAGIGAKRRQRLLTRFGGLDGVKNASADELAQVEGISP 589 Query: 598 KIACKIYNHFH 608 +A KIY+ H Sbjct: 590 ALAQKIYDELH 600 >gi|86748302|ref|YP_484798.1| excinuclease ABC subunit C [Rhodopseudomonas palustris HaA2] gi|119367824|sp|Q2J0X3|UVRC_RHOP2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|86571330|gb|ABD05887.1| Excinuclease ABC subunit C [Rhodopseudomonas palustris HaA2] Length = 695 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 298/607 (49%), Positives = 397/607 (65%), Gaps = 5/607 (0%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 P PGVY+ML+ A VLYVGKA N++KR+ SY H RI MI+ + T TE Sbjct: 87 PTSPGVYRMLNAAHDVLYVGKAKNVKKRLSSYARPTGHVMRIARMIAATVTVEIISTSTE 146 Query: 67 VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126 EALLLEAN+IK+L+PRFN+LLRDDKSFPYILIT H P + KHR + + G YFGPFA Sbjct: 147 TEALLLEANLIKQLRPRFNVLLRDDKSFPYILITGDHWAPQILKHRGAQSRPGRYFGPFA 206 Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186 SV AV +TI +LQR F +RSC DS F RTRPCLL+QI+RCSGPCTGE+ Y E V E Sbjct: 207 SVGAVNRTITALQRAFLVRSCTDSFFESRTRPCLLYQIRRCSGPCTGEVDFPGYTELVRE 266 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMD 243 AK FLSG + +K+++A M +A+ + ++E+A ++RDRLAALS IQ+ D Sbjct: 267 AKDFLSGRSRAVKQELAVEMEKASNELEFETAALYRDRLAALSAIQSQQGINPRTVEEAD 326 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303 F++Y +C++ FF GQN G +F + + T ++L+ FL QFY DKP P+ I Sbjct: 327 VFAIYQEGGYSCVEVFFFRTGQNWGNRAYFPRAEKSFTPEEVLASFLAQFYDDKPPPKLI 386 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 LLS + E+ +LL + + KV+I+ PK+GEK++++ AL NA + +KL+ + Sbjct: 387 LLSHDIEDCALLADALCIKADRKVEISTPKRGEKKELVAHALTNAREALGRKLADTATQT 446 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 +L+ LP P+RIE+YDNSHI G +AVG M+V G +GF+KNQYRKFN+ + Sbjct: 447 RLLQGLATTLGLPKPPQRIEVYDNSHIQGTNAVGAMIVAGPDGFIKNQYRKFNIRSEGLT 506 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD AMMR VLERRF +L + K + P WPD+VI+DGG+GQL+AA+GVL Sbjct: 507 PGDDYAMMREVLERRFKRLAA-AKAEGEAAKPNDDETPQWPDLVIIDGGRGQLNAARGVL 565 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 +L ++ +T++ +AKGP R AG E F+ + EA+ L RDP+LYFIQRLRDEAHRF I Sbjct: 566 TELGLDAEVTLLGVAKGPDRDAGRETLFMPEREAIKLEPRDPVLYFIQRLRDEAHRFVIG 625 Query: 544 THRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 +HRK RKK L EI GIGP RKR LL FGT+K I R+S L + GIS + A + Sbjct: 626 SHRKLRKKDIREAGLQEIPGIGPSRKRALLHHFGTLKEIERASLGDLGKVPGISAESARR 685 Query: 603 IYNHFHK 609 I++ FH Sbjct: 686 IFDFFHP 692 >gi|253998716|ref|YP_003050779.1| excinuclease ABC subunit C [Methylovorus sp. SIP3-4] gi|253985395|gb|ACT50252.1| excinuclease ABC, C subunit [Methylovorus sp. SIP3-4] Length = 600 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 224/611 (36%), Positives = 329/611 (53%), Gaps = 23/611 (3%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PGVY+M++ V+YVGKA +L+KR+ SY N + R M+SQI I TV Sbjct: 8 LKNLPNLPGVYRMINAEDAVIYVGKARDLKKRVSSYFQKNLPSPRTRMMVSQIERIETTV 67 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EALLLE N+IK PR+N+L RDDKS+PYI +T P L HR + SYF Sbjct: 68 TRSEAEALLLENNLIKSFMPRYNVLFRDDKSYPYITLT-GDAFPRLAFHRGTQRKGNSYF 126 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF + AV ++I LQ+ F LR+C ++VF +R+RPCL +QI+RC+ PC IS E Y Sbjct: 127 GPFPNAVAVRESIQLLQKVFRLRTCENTVFANRSRPCLQYQIQRCTAPCVNFISEEDYRR 186 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IY 239 V A FL G + ++++ M QA +++YE A ++RDR+ +L +Q Sbjct: 187 DVSHATLFLQGREQQVMDELSHKMMQAAEEQEYEMAAVYRDRMQSLRQVQAKQFVSDFTI 246 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 + D + C+ G++ G + F K + FL Q Y + Sbjct: 247 SDADVIACAELHGQLCVNLVMIRGGRHLGDKSHFPKNAEGADARMTAEAFLEQHYMPQNT 306 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P I++ E ET+ LE +Q G KVKI G+KR ++ A NA + Q+ + Sbjct: 307 PPLIIVGVEGMETAELEEVLSEQAGRKVKINTNPIGDKRVWLKMAQTNAELALEQRSAAN 366 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + Q L + LP +RIE +D SH MG + V VV ++YR++N+ Sbjct: 367 ANQQARLVALREALDLPETTERIECFDISHTMGEATVASCVVFDRGAMQNSEYRRYNI-- 424 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A MR L RR+ ++ E PD+V +DGGKGQL A Sbjct: 425 TGITPGDDYAAMRDALTRRYKKVAAGE--------------GLLPDLVFIDGGKGQLGVA 470 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQRLRDEAH 538 V+ ++ + + I ++ IAKG +R G+E+ FF + + L P L+ +Q++RDEAH Sbjct: 471 VEVMHEVGLPD-IQLVGIAKGEERKPGLEQMFFPDRDTPVGLRNDHPGLHLLQQIRDEAH 529 Query: 539 RFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR RR KA +S L++I GIG R++ LL FG + + +S + LA +EGIS Sbjct: 530 RFAITGHRARRGKARMHSSLEDIAGIGAKRRQRLLTRFGGLDGVKNASADELAQVEGISP 589 Query: 598 KIACKIYNHFH 608 +A KIY+ H Sbjct: 590 ALAQKIYDELH 600 >gi|49475349|ref|YP_033390.1| excinuclease ABC subunit C [Bartonella henselae str. Houston-1] gi|81648054|sp|Q6G424|UVRC_BARHE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|49238155|emb|CAF27363.1| Excinuclease ABC subunit c [Bartonella henselae str. Houston-1] Length = 661 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 316/613 (51%), Positives = 417/613 (68%), Gaps = 7/613 (1%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +P PGVY+M+D G+VLYVGKA NL+KR+ +Y H +RIT MI +++ F VT Sbjct: 48 KHLPHKPGVYRMVDENGKVLYVGKARNLKKRVSNYTREQGHNNRITRMIRATSHMEFVVT 107 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE+EALLLEAN+IKRL PRFN+LLRDDKSFPYI+ITD H+ PALYKHR + T + YFG Sbjct: 108 HTEIEALLLEANLIKRLHPRFNVLLRDDKSFPYIIITDDHRAPALYKHRGARTRKAHYFG 167 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TIN LQR F LR+C DSV +RTRPCLL+QIKRCS PCT EIS Y E Sbjct: 168 PFASSSAVTQTINVLQRAFLLRTCTDSVLENRTRPCLLYQIKRCSAPCTHEISDRDYREL 227 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V AK FLSG + ++K + + M++A D+E A +RDRL+ALSHIQ+H Sbjct: 228 VKGAKSFLSGKSQSIKNDMVQAMHKAAKNFDFEQAAAYRDRLSALSHIQSHQGINPQTIE 287 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F++ + ++CIQ FF GQN G +F K D ++++IL+ FL QFY DKP P Sbjct: 288 EADVFAIAQKEGISCIQVFFFRMGQNWGNRAYFPKADPSFSSSEILASFLSQFYDDKPLP 347 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + ILLSE E+ +LL +F + K+ +++PKQGE++ ++ A INAH + KL+ Sbjct: 348 KLILLSESIEDKTLLAEAFSLKANRKISLSLPKQGERKTLVNYAYINAHETLGHKLAETA 407 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 +H + + + F LPH P RIEIYDNSHIMG +AVG M+V G+NGF+KNQYRKFN+ Sbjct: 408 THTKLFQGIAEIFQLPHTPCRIEIYDNSHIMGTNAVGAMIVAGKNGFIKNQYRKFNIRST 467 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFH---PKKQEYSFPSWPDVVILDGGKGQLS 477 D+ DD MM+ V++RRFS+LIK + K + SFP WPD++++DGGKGQ++ Sbjct: 468 DITPGDDFGMMKEVIKRRFSRLIKEHGLPHESKNIQSKDDASFPIWPDLILIDGGKGQIN 527 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 + +L +L ++N +T++ IAKG R AG E+FF+K L DPILYF+QRLRDEA Sbjct: 528 SVHTILSELGLDNFMTVVGIAKGADRRAGRERFFIKGKTPFTLPPCDPILYFLQRLRDEA 587 Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAI THR +RKK +PLDEI IGP RKR LL FG+ K I+ +S E L + GIS Sbjct: 588 HRFAIGTHRAKRKKETLKNPLDEIENIGPTRKRALLHHFGSAKAIASASLEDLTKVIGIS 647 Query: 597 KKIACKIYNHFHK 609 IA KIYNHF++ Sbjct: 648 TTIAQKIYNHFNE 660 >gi|304391992|ref|ZP_07373934.1| excinuclease ABC subunit C [Ahrensia sp. R2A130] gi|303296221|gb|EFL90579.1| excinuclease ABC subunit C [Ahrensia sp. R2A130] Length = 659 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 286/610 (46%), Positives = 402/610 (65%), Gaps = 5/610 (0%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRFTVT 63 ++P+ PGVY+M++ AG VLYVGKA NL+ R+ SY H +R MI++ N+ F T Sbjct: 49 RLPKKPGVYRMMNRAGDVLYVGKAKNLKNRVSSYARGVGHGGNRTARMIAETANMEFVTT 108 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PR+N+L+RDDKSFPYIL+T H P L+K R + T +G Y+G Sbjct: 109 NTETEALLLEANLIKRLRPRYNVLIRDDKSFPYILLTSDHDAPGLFKFRGARTRKGDYYG 168 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFA+ +V TI +LQR F LR+C DS +++RTRPCLL QIKRC+GPCTGE+S + Y + Sbjct: 169 PFANAGSVNSTITALQRIFQLRTCTDSFYQNRTRPCLLHQIKRCAGPCTGEVSKDDYADL 228 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240 V + K FLSG + +K++ + M A+ + D+E A I+RDRLAALSH+ H Sbjct: 229 VKQTKDFLSGRSQEIKQRFSTRMQTASDEMDFELAAIYRDRLAALSHVSGHQGINPQHLK 288 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ + CIQ FF GQN G +F + D A++L F+ QFY DKP P Sbjct: 289 EADIFAIHEEQGHFCIQVFFFRTGQNWGNRAYFPRADKTFEPAEVLEAFVSQFYDDKPVP 348 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 +L S E + LL + + G+KV ++ P++GEKR+++EQ NA + +KLS Sbjct: 349 RMVLTSHELAQEELLAEALSAKAGHKVVVSKPQRGEKRELMEQVARNAREALGRKLSESA 408 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 + +L + F L P+RIE+YDNSHIMG +AVG M+V G +GF KNQYRKFN+ Sbjct: 409 TQNKLLAGLQEVFQLDRPPRRIEVYDNSHIMGTNAVGGMIVAGPDGFAKNQYRKFNIKDE 468 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 ++ DD MM+ V RRF++L K N + + E + P+WPD+V++DGG GQLSA + Sbjct: 469 EITPGDDFGMMKEVFTRRFARLKKENGNESPKDESAEDTMPAWPDLVLIDGGAGQLSACR 528 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 ++K+L++E+++T++ +AKG R AG E+F + L +RDP LYFIQRLRDEAHRF Sbjct: 529 EIMKELDLEDKVTLVGVAKGVDRDAGRERFHQTGKKDFTLPLRDPTLYFIQRLRDEAHRF 588 Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI THR +RKK +PLDEI GIGP RKR +L FG+ K R++ E L ++G+S+ + Sbjct: 589 AIGTHRAKRKKDQLKNPLDEIEGIGPSRKRAILHHFGSAKAAGRAAVEDLMEVDGVSENM 648 Query: 600 ACKIYNHFHK 609 A +I+ HF K Sbjct: 649 ARRIHAHFQK 658 >gi|319408328|emb|CBI81981.1| excinuclease ABC subunit C [Bartonella schoenbuchensis R1] Length = 661 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 312/613 (50%), Positives = 419/613 (68%), Gaps = 7/613 (1%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +P PGVY+M + G VLYVGKA NL+KR+ SY H +RI MIS ++ F VT Sbjct: 48 KHLPHKPGVYRMFNENGDVLYVGKARNLKKRVSSYTREQGHNNRIIRMISATYHMEFVVT 107 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL PRFN+LLRDDKSFPYI+ITD H+ PALYKHR + T + YFG Sbjct: 108 HTETEALLLEANLIKRLHPRFNVLLRDDKSFPYIIITDDHRAPALYKHRGARTRKAHYFG 167 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TIN+LQR F LR+CADSVF +RTRPCLL+QIKRCS PCT EI+ Y++ Sbjct: 168 PFASSGAVAQTINALQRAFLLRTCADSVFNNRTRPCLLYQIKRCSAPCTHEINDSDYIKL 227 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V +AK FLSG + ++K+ +A+ M++A+ D+E AI +RDRL+ALSHIQ+H Sbjct: 228 VQKAKAFLSGKSQSVKKDMAQAMHKASENLDFEQAIAYRDRLSALSHIQSHQGINPQTVK 287 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F++ + CIQ FF GQN G +F K DS +NA+IL F+ QFY DKP P Sbjct: 288 EADVFAIAQQGGMTCIQVFFFRMGQNWGNRAYFPKADSSFSNAEILMSFITQFYDDKPIP 347 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + ILLSE+ EE +LL + + +K+ +++P++GE++ ++ A NA+ + +KL+ Sbjct: 348 KLILLSEKIEEEALLTEALNLKANHKISLSLPQKGERKSLVNHAYTNAYEALGRKLAETA 407 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 +H +L+ + F LPH P+RIEIYDNSHIMG +AVG MVV + GF+KNQYRKFN+ Sbjct: 408 THIKLLQGVAETFQLPHTPRRIEIYDNSHIMGTNAVGAMVVFDQTGFIKNQYRKFNIRST 467 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEY---SFPSWPDVVILDGGKGQLS 477 D+ DD MM+ V+ERRFS+LIK N + + SFP WPD++++DGG+GQ++ Sbjct: 468 DITPGDDFGMMKEVIERRFSRLIKEHGLPNRNKDTKNDSDNSFPIWPDLILIDGGEGQIN 527 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 + +L +L +++ +T I IAKG R+AG E+FF+K L DPILYF+QRLRDEA Sbjct: 528 VVRTLLSQLGLDDFVTAIGIAKGANRNAGRERFFIKGKPPFTLPSHDPILYFLQRLRDEA 587 Query: 538 HRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAI THR +RKK + LDEI IGP RK LL FG+ K I+ +S E L + GIS Sbjct: 588 HRFAIETHRAKRKKETFKNLLDEIENIGPTRKSALLNHFGSTKAIANASVEDLNKVAGIS 647 Query: 597 KKIACKIYNHFHK 609 +A KI+NHF++ Sbjct: 648 TAMAQKIHNHFNE 660 >gi|154252723|ref|YP_001413547.1| excinuclease ABC subunit C [Parvibaculum lavamentivorans DS-1] gi|154156673|gb|ABS63890.1| excinuclease ABC, C subunit [Parvibaculum lavamentivorans DS-1] Length = 644 Score = 577 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 284/618 (45%), Positives = 398/618 (64%), Gaps = 13/618 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+ PGVY+M G +LYVGKA +L+KR+ SY H++RI MI+ + F Sbjct: 36 KVKLLPDSPGVYRMYGTGGELLYVGKARSLKKRVASYTKLAGHSNRIARMIASTIQMEFI 95 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T TE +ALLLEAN+IKRLKPR+N+L+RDDKSFPYIL+T H P + KHR + G Y Sbjct: 96 STATETDALLLEANLIKRLKPRYNVLMRDDKSFPYILLTGDHDFPQVVKHRGGRSRPGDY 155 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GPFAS AV T+N+LQ+ F LRSC+DSVF RTRPCLLFQIKRCS PCTGEI E Y Sbjct: 156 YGPFASAGAVTATLNALQKAFLLRSCSDSVFESRTRPCLLFQIKRCSAPCTGEIDRESYA 215 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 + EA+ FL G + ++++ M +A+ D+E A I+RDR+ AL+ IQ H Sbjct: 216 VLLAEARDFLRGRSRKTQQQLVELMEKASADLDFEQASIYRDRIRALTQIQQHQGINPQT 275 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F+ + C+Q FF GQN G +F + D E + ++L FL QFY D+P Sbjct: 276 VTEADVFAAWTEGGQTCVQVFFFRAGQNWGNRAYFPRHDKELSTEEVLDAFLAQFYEDRP 335 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P +LLS + +LL + + G KV + +PK+GEKR++++ AL+NA + ++L+ Sbjct: 336 PPRLVLLSHDVPGRALLAEALTIRAGRKVAVGLPKRGEKRQLVDHALLNAREALGRRLAE 395 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 S + +L+ + F L P RIE+YDNSHI G AVG M+V G +GF+KNQYRKFN+ Sbjct: 396 SSSQRKLLEGVAEAFGLEQPPARIEVYDNSHISGSQAVGGMIVAGPDGFMKNQYRKFNIK 455 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 +D++ DD AMMR VL RRF++L+K E +WPD++++DGG GQL Sbjct: 456 GDDIEPGDDYAMMRQVLTRRFTRLLKESEGKPADE--------TWPDLLLIDGGAGQLKV 507 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A VL +L ++N +T + +AKGP+R AG E+FF+ ++ R+P+LY++QRLRDEAH Sbjct: 508 ALEVLAELGIDN-VTAVGVAKGPERDAGRERFFMAGRPDFMMEPRNPVLYYLQRLRDEAH 566 Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 R+AI +HR RR KA +PLD++ G+GP RKR LLQ FG+ + ++R+ L S+EGIS Sbjct: 567 RYAIGSHRARRSKAIGVNPLDDVPGVGPGRKRALLQHFGSARAVARAGLADLESVEGISA 626 Query: 598 KIACKIYNHFHKNTSHTP 615 K+A +Y+HFH N P Sbjct: 627 KVARAVYDHFHGNPDSAP 644 >gi|126734014|ref|ZP_01749761.1| excinuclease ABC subunit C [Roseobacter sp. CCS2] gi|126716880|gb|EBA13744.1| excinuclease ABC subunit C [Roseobacter sp. CCS2] Length = 622 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 260/610 (42%), Positives = 381/610 (62%), Gaps = 14/610 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY+MLD RVLYVGKA NL+ R+ +Y H+ RIT MI + ++ F T Sbjct: 22 TLDSSPGVYRMLDADSRVLYVGKARNLKARVSNYARPGQHSPRITRMIRETASMMFLTTR 81 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLE N+IK+LKPR+N+LLRDDKSFP IL+T H P + KHR + QG+Y+GP Sbjct: 82 TETEALLLEQNLIKQLKPRYNVLLRDDKSFPNILVTKDHAFPMIKKHRGAKKQQGNYYGP 141 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 FA AV +T+N LQR F LR+C+DS F RTRPCL +QIKRCSGPC G I+ Y V Sbjct: 142 FAGAGAVNRTLNQLQRVFLLRNCSDSDFETRTRPCLQYQIKRCSGPCCGLIAEGDYEASV 201 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 +A+KFL G ++E +A+ M A+ ++E A RDR+ AL+ +Q+ Sbjct: 202 RDAEKFLQGRTKGIQEALAKQMQDASEAMEFERAAALRDRIKALTQVQSAQGINPQNTPE 261 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D +L+ + AC+Q F QN G ++ + + ++++ F+ QFY+++ P Sbjct: 262 ADVIALHRDGGQACVQVFFIRANQNWGNHDYYPRVSGDEDPSEVMEAFVGQFYSNREPPR 321 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 ++LS + L+ + ++ KV+I VP++GEK ++++ AL NA S +K+S + Sbjct: 322 MLILSHGLDSDDLMADALAEKAERKVEIIVPQRGEKAELVQNALRNARESLARKMSETAT 381 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 +LK + F + P+RIE+YDNSHI G AVG MVV G +GF KNQYRKFN+ +D Sbjct: 382 QARLLKGVAEAFEMDRAPQRIEVYDNSHIQGAHAVGAMVVAGPDGFDKNQYRKFNIRGDD 441 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 + DD MM+ VL RRF +L+K + E + +WPD++++DGG+GQ+SA + Sbjct: 442 LTPGDDFGMMKEVLTRRFQRLLKED---------PERTLGTWPDLLLIDGGQGQVSAVRE 492 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 ++ L V + I ++ +AKG R AG E+F + L DP+LYFIQR+RDE HRFA Sbjct: 493 IMNDLGVSD-IPMVGVAKGEDRDAGKEEFHRTGKPVMALRHNDPVLYFIQRMRDEVHRFA 551 Query: 542 ITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 I THR +R KA +PLD++ G+G RKR LL FG+ K ++R++ L +++G+S K+A Sbjct: 552 IGTHRAKRSKAIGATPLDDVPGVGATRKRALLAHFGSAKAVARANLADLKAVDGVSAKLA 611 Query: 601 CKIYNHFHKN 610 +Y++FH+N Sbjct: 612 QTVYDYFHEN 621 >gi|260431637|ref|ZP_05785608.1| excinuclease ABC, C subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260415465|gb|EEX08724.1| excinuclease ABC, C subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 626 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 266/609 (43%), Positives = 381/609 (62%), Gaps = 15/609 (2%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + + PGVY+MLD RVLYVGKA NL+ R+ +Y H+ RI MI+ ++ F T Sbjct: 26 KTLDNSPGVYRMLDADSRVLYVGKARNLRARVSNYTRP-GHSPRIERMIASTASMMFLTT 84 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLE N+IK+LKP++N+LLRDDKSFP IL+ H P + KHR + +G+YFG Sbjct: 85 RTETEALLLEQNLIKQLKPKYNVLLRDDKSFPNILVAKDHPFPQIKKHRGAKKEKGAYFG 144 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +T+N LQ+ F LR+C+DS+F RTRPCLL+QIKRCSGPC G IS Y E Sbjct: 145 PFASAGAVNRTLNQLQKAFLLRNCSDSMFDSRTRPCLLYQIKRCSGPCVGMISQADYAES 204 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--- 240 V +A++FLSG + ++E++A M +A+ ++E A RDR+ AL+ +Q Sbjct: 205 VRDAERFLSGRSTRIQEELAAQMQEASDAMEFERAAALRDRIRALTQVQTAQGINPRGVA 264 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D LY + AC+Q F QN G F+ + + + A+++ FL QFY +K P Sbjct: 265 EADVIGLYMDSGQACVQVFFIRANQNWGNRDFYPRVGPDVSPAEVMEAFLGQFYDNKEPP 324 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 ++LS+ E L++ + ++ G KV+I VP++GEK +++ AL NA + +++S Sbjct: 325 RQLILSDAIENADLMQQALSEKAGRKVEILVPQRGEKLELVSGALRNAREALARRMSESA 384 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 + +L+ + F L P RIE+YDNSHI G +AVG M+V G GF+KN YRKFN+ + Sbjct: 385 TQAKLLRGLAEAFDLDAPPNRIEVYDNSHIQGTNAVGAMIVAGPEGFMKNAYRKFNIRGD 444 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 D+ DD MM+ VL RRF++L+K + + + WPD++++DGG GQ+SA Sbjct: 445 DLTPGDDFGMMKEVLTRRFTRLLKED---------PDRNKGLWPDLLLIDGGAGQVSAVH 495 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 +++ VE+ I ++ +AKG R G E+F L DP+LYFIQRLRDEAHRF Sbjct: 496 EIMQAHGVED-IPMVGVAKGVDRDHGKEEFHRIGQRPFALKRNDPVLYFIQRLRDEAHRF 554 Query: 541 AITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI THR +R KA +PLDEI G+G RKR LL FG+ K +SR++ L +++GIS + Sbjct: 555 AIGTHRAKRAKAMGATPLDEIPGVGAARKRALLAHFGSAKAVSRANLADLKAVDGISAGL 614 Query: 600 ACKIYNHFH 608 A K+Y+ FH Sbjct: 615 AQKVYDFFH 623 >gi|299134247|ref|ZP_07027440.1| excinuclease ABC, C subunit [Afipia sp. 1NLS2] gi|298590994|gb|EFI51196.1| excinuclease ABC, C subunit [Afipia sp. 1NLS2] Length = 683 Score = 575 bits (1482), Expect = e-162, Method: Composition-based stats. Identities = 293/612 (47%), Positives = 391/612 (63%), Gaps = 9/612 (1%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + + P PGVY+ML+ +G VLYVGKA N++KR+ SY H RI MI+ N+ Sbjct: 74 AVKLAPTSPGVYRMLNESGDVLYVGKAKNVKKRLSSYARPTGHVVRIARMIAMTVNVEIV 133 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T TE EALLLEAN+IK+L+PRFN+LLRDDKSFPYILIT H P L KHR + T G Y Sbjct: 134 STETETEALLLEANLIKQLRPRFNVLLRDDKSFPYILITGDHWAPQLVKHRGAQTRPGRY 193 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPFASV AV +T+ +LQR F +RSC DS F RTRPCLLFQIKRC+GPCTGEI Y Sbjct: 194 FGPFASVGAVNRTLTALQRAFLIRSCTDSFFEGRTRPCLLFQIKRCAGPCTGEIDFPAYT 253 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + V EA FLSG + +KE++A M +A+ + ++E A ++RDRLAALS +Q Sbjct: 254 QLVREATDFLSGRSRAVKEQLAAEMEKASAELEFERAALYRDRLAALSAVQAQQGINPRT 313 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F+++ +C++ FF GQN G +F + D T ++L FL QFY KP Sbjct: 314 VEEADVFAIHQEGGYSCVEVFFFRTGQNWGNRAYFPRADKSLTAEEVLGSFLSQFYDGKP 373 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P+ +LLS + EE LL + + G+KV+++ P++GEK++++ AL NA + +KL+ Sbjct: 374 PPKLVLLSHKIEEGELLASALSVKAGFKVEVSTPQRGEKKELVNHALTNAREALGRKLAD 433 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + +L LP P+RIEIYDNSHI G +AVG MVV G GF+KNQYRKFN+ Sbjct: 434 TATQTRLLDSLVSALQLPQPPRRIEIYDNSHIQGTNAVGAMVVAGPEGFMKNQYRKFNIR 493 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 ++ DD MMR VL+RRF +L+ E + ++ P WPD+VI+DGG GQL+A Sbjct: 494 SENLTPGDDYGMMREVLQRRFKRLLSAE----AGAQAKDDDVPQWPDLVIIDGGLGQLNA 549 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 + + +L V ++++S+AKGP R AG E F+ A+ L RDP+LYFIQRLRDEAH Sbjct: 550 VRQIFDELGVTG-VSLMSVAKGPDRDAGRETLFLPDRPAIKLEPRDPVLYFIQRLRDEAH 608 Query: 539 RFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RF I +HRK RKK L EI GIGP RKR LL FGT+K I R+S L + G+S Sbjct: 609 RFVIGSHRKLRKKDIREAGLQEIPGIGPARKRALLHHFGTLKEIERASLADLGKVPGVSA 668 Query: 598 KIACKIYNHFHK 609 + A +I++ FH Sbjct: 669 ESARRIHDFFHP 680 >gi|121996832|ref|YP_001001619.1| excinuclease ABC subunit C [Halorhodospira halophila SL1] gi|121588237|gb|ABM60817.1| Excinuclease ABC subunit C [Halorhodospira halophila SL1] Length = 613 Score = 575 bits (1482), Expect = e-162, Method: Composition-based stats. Identities = 223/608 (36%), Positives = 344/608 (56%), Gaps = 22/608 (3%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PGVY+ML G ++YVGKA NL++R+ SY + T + ++ I +++ TVT T Sbjct: 22 LPERPGVYRMLSAEGTIIYVGKARNLRRRVSSYFTPSRKTPKTERLVQLIADVQITVTHT 81 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EAL+LE N+IK +PR+N+LLRDDKS+PYI ++ + P L HR + G +FGP+ Sbjct: 82 EAEALILENNLIKEHRPRYNVLLRDDKSYPYIYLSSHQQFPRLGYHRGARQGAGRFFGPY 141 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + +AV +T+ LQ+ F +R C D+ FR+R+RPCL +QI+RC+ PC G IS E Y V Sbjct: 142 PNSNAVRETLGYLQKVFPIRQCRDTFFRNRSRPCLQYQIRRCTAPCVGYISEEDYRRDVR 201 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCF 245 + + FL G + + ++ R M +A ++E A RDR+A L HIQ +R D Sbjct: 202 DVEFFLEGRSGEVIAELVRRMEEAAENLEFEQAARLRDRIANLRHIQQRQYVAQDRDDNM 261 Query: 246 ---SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 + + AC+Q F G + G ++F T S S + IL+ FL Q Y + P Sbjct: 262 DIVACVAEGDTACVQVFFIRGGSSLGNQSYFPNTPSGSRESDILASFLAQHYLGRVAPPE 321 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 ++++ E LLE + G V I +G++R+ +E A NA + + + ++ S Sbjct: 322 VVINRPVREQRLLEQALRTASGGTVAIRHRVRGDRRRWVEMAEENARYALSARSASTASQ 381 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 Q + P+RIE +D SH G + V VV G VK+ YR+FN+ +V Sbjct: 382 QRRYSALAEVIDSDAPPERIECFDISHTAGEATVASCVVFNREGPVKSDYRRFNIR--NV 439 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD A M L RR+ ++ E PD++++DGGKGQ++ A+ V Sbjct: 440 TAGDDYAAMHQALTRRYRRVKSGE--------------APLPDLLLIDGGKGQVAQARDV 485 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFA 541 L +L ++ + ++ IAKGP+R G E + GE + L P L+ +Q++RDEAHRFA Sbjct: 486 LDELGIDG-VALMGIAKGPERRPGEETLLLDDGEREIELPADSPALHLLQQVRDEAHRFA 544 Query: 542 ITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 ++ HR+RR KA S L+EI G+GP R++ LL+ FG ++ I ++ E LA + GI + +A Sbjct: 545 VSGHRQRRGKARRESILEEIPGLGPKRRQSLLKHFGGIQGIRQAGIEDLARVPGIHRSLA 604 Query: 601 CKIYNHFH 608 +IY+ FH Sbjct: 605 QRIYDTFH 612 >gi|39934246|ref|NP_946522.1| excinuclease ABC subunit C [Rhodopseudomonas palustris CGA009] gi|81563723|sp|Q6NAL3|UVRC_RHOPA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|39648094|emb|CAE26614.1| putative excinuclease ABC subunit C [Rhodopseudomonas palustris CGA009] Length = 704 Score = 575 bits (1481), Expect = e-161, Method: Composition-based stats. Identities = 290/610 (47%), Positives = 392/610 (64%), Gaps = 8/610 (1%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 P PGVY+ML+ VLYVGKA N++KR+ SY RI MI+ + T TE Sbjct: 91 PTSPGVYRMLNAERDVLYVGKAKNVKKRLASYARPTGQVLRIARMIALTVEVEVISTTTE 150 Query: 67 VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126 EALLLEAN+IK+L+PRFN+ LRDDKSFPYILIT H P + KHR + + G YFGPFA Sbjct: 151 TEALLLEANLIKQLRPRFNVQLRDDKSFPYILITSDHWAPQILKHRGAQSRPGRYFGPFA 210 Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186 S AV +TI +LQR F +RSC DS F RTRPCLL+QI+RC+GPCTGE+ Y E V E Sbjct: 211 SAGAVNRTITALQRAFLVRSCTDSFFESRTRPCLLYQIRRCAGPCTGEVDFPGYSELVRE 270 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMD 243 A FLSG + +KE +A M +A+ + ++E+A ++RDRLAALS IQ+ D Sbjct: 271 ATDFLSGRSRAVKELLAAEMEKASGELEFETAALYRDRLAALSAIQSQQGINPRTVEEAD 330 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303 F+++ + +C++ FF GQN G +F + + T A++L F+ QFY DKP P+ I Sbjct: 331 VFAIHQDGGYSCVEVFFFRTGQNWGNRAYFPRAEKSFTPAEVLGAFVAQFYDDKPPPKLI 390 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 LLS E EE LL + + G+KV+ITVPK+GEK++++ A NA + +KL+ + Sbjct: 391 LLSHEIEEAELLADALCVKAGHKVEITVPKRGEKKELVAHAQTNAREALGRKLADTATQA 450 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 +L++ LP P+RIE+YDNSHI G +AVG M+V G +GF+KNQYRKFN+ + Sbjct: 451 RLLENLATTLGLPKTPQRIEVYDNSHIQGTNAVGAMIVAGPDGFIKNQYRKFNIRSEGLT 510 Query: 424 TQDDCAMMRMVLERRFSQLI----KNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 DD AMMR VL+RRF +L+ + + K ++ P WPD+VI+DGG+GQL+AA Sbjct: 511 PGDDYAMMREVLQRRFKRLVTSQAEGDGEAAAKAKPKDDDVPQWPDLVIIDGGRGQLNAA 570 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 + L + + +++T++ +AKGP R AG E F+ +A+ L RDP+LYFIQRLRDEAHR Sbjct: 571 REALSGIGLTDQVTLLGVAKGPDRDAGRETLFLPDRDAIKLEPRDPVLYFIQRLRDEAHR 630 Query: 540 FAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 F I +HR RKK L EI GIGP RKR LL FGT+K I R+S L + GIS + Sbjct: 631 FVIGSHRTLRKKDIREAGLQEIPGIGPTRKRALLLHFGTLKEIERASIADLGKVPGISAE 690 Query: 599 IACKIYNHFH 608 A +I+ FH Sbjct: 691 SAKRIFEFFH 700 >gi|103486571|ref|YP_616132.1| excinuclease ABC subunit C [Sphingopyxis alaskensis RB2256] gi|119367841|sp|Q1GU73|UVRC_SPHAL RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|98976648|gb|ABF52799.1| Excinuclease ABC subunit C [Sphingopyxis alaskensis RB2256] Length = 644 Score = 575 bits (1481), Expect = e-161, Method: Composition-based stats. Identities = 255/609 (41%), Positives = 371/609 (60%), Gaps = 14/609 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P PGVY+MLD G VLYVGKA L+ R+ SY R+ M++Q + T Sbjct: 44 KLPARPGVYRMLDARGDVLYVGKARALRNRVTSYTQVARLPQRLQRMVAQTRAMEIVTTT 103 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLEA +IKR +P +N+LLRDDKSFP+IL+ H P + KHR + +G Y+GP Sbjct: 104 SEAEALLLEAQLIKRYRPPYNVLLRDDKSFPFILLRTDHDFPRVQKHRGARRAKGRYYGP 163 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 FAS +V +T+N+LQ+TF LRSC DS F +R+RPCLL+QI+RCS PC IS E Y V Sbjct: 164 FASAGSVARTLNALQKTFLLRSCTDSFFANRSRPCLLYQIRRCSAPCVDRISKEDYAGLV 223 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 +A+ FL G + +++++ M +A D+E A + RDRL AL+ IQ + Sbjct: 224 SDAQDFLEGRSTAVQKRLGEAMTRAADAMDFEQAAVLRDRLKALTFIQGSQSVHADGLGD 283 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D F+L CI F GQN G +FF + ++++ FL QFY P P+ Sbjct: 284 ADVFALAAKGGQLCIAGFFIRGGQNWGHRSFFPAHVAGVPETEVMASFLMQFYEGVPPPK 343 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 IL+ E +E++LL + + G KV+I+VP++G ++++++QA+ NA ++L+ S Sbjct: 344 LILVDREPDESALLAEALGETAGRKVEISVPQRGNRKRLLDQAVRNAGEELDRRLAESSS 403 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 + ++ F L + P+RIEIYDNSHI G SA+G MVV G G++K YRKFN+ + Sbjct: 404 QAKLGRELADLFDLENPPQRIEIYDNSHIQGTSALGAMVVAGPEGWMKGAYRKFNIKRAE 463 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 + DD AMMR V +RRF++ I+ + E + WPD+V++DGGKGQ+SA Sbjct: 464 TQPGDDFAMMREVFQRRFARAIEED---------PERTKGEWPDLVLIDGGKGQVSAVAA 514 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 V +L +++ + + +AKGP R+AG E F++ G L + +L++IQRLRDEAHRFA Sbjct: 515 VFSELGIDD-LPFVGVAKGPDRNAGRETFYLPDGREFTLPTNNAVLFYIQRLRDEAHRFA 573 Query: 542 ITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 I HR +R KA SPLDE+ GIGP RK+ LL FGT + I +S E L G+S +A Sbjct: 574 IGAHRAKRAKAMGSSPLDEVPGIGPARKKALLMHFGTTRAIKGASLEDLQKAPGVSAAVA 633 Query: 601 CKIYNHFHK 609 +Y+ ++ Sbjct: 634 QAVYDFYNP 642 >gi|192289772|ref|YP_001990377.1| excinuclease ABC subunit C [Rhodopseudomonas palustris TIE-1] gi|192283521|gb|ACE99901.1| excinuclease ABC, C subunit [Rhodopseudomonas palustris TIE-1] Length = 704 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 290/610 (47%), Positives = 392/610 (64%), Gaps = 8/610 (1%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 P PGVY+ML+ VLYVGKA N++KR+ SY RI MI+ + T TE Sbjct: 91 PTSPGVYRMLNAERDVLYVGKAKNVKKRLASYARPTGQVLRIARMIALTVEVEVISTTTE 150 Query: 67 VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126 EALLLEAN+IK+L+PRFN+ LRDDKSFPYILIT H P + KHR + + G YFGPFA Sbjct: 151 TEALLLEANLIKQLRPRFNVQLRDDKSFPYILITGDHWAPQILKHRGAQSRPGRYFGPFA 210 Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186 S AV +TI +LQR F +RSC DS F RTRPCLL+QI+RC+GPCTGE+ Y E V E Sbjct: 211 SAGAVNRTITALQRAFLVRSCTDSFFESRTRPCLLYQIRRCAGPCTGEVDFPGYSELVRE 270 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMD 243 A FLSG + +KE +A M +A+ + ++E+A ++RDRLAALS IQ+ D Sbjct: 271 ATDFLSGRSRAVKELLAAEMEKASGELEFETAALYRDRLAALSAIQSQQGINPRTVEEAD 330 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303 F+++ + +C++ FF GQN G +F + + T A++L F+ QFY DKP P+ I Sbjct: 331 VFAIHQDGGYSCVEVFFFRTGQNWGNRAYFPRAEKSFTPAEVLGAFVAQFYDDKPPPKLI 390 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 LLS E EE LL + + G+KV+ITVPK+GEK++++ A NA + +KL+ + Sbjct: 391 LLSHEIEEAELLADALCVKAGHKVEITVPKRGEKKELVAHAQTNAREALGRKLADTATQA 450 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 +L++ LP P+RIE+YDNSHI G +AVG M+V G +GF+KNQYRKFN+ + Sbjct: 451 RLLENLATTLGLPKTPQRIEVYDNSHIQGTNAVGAMIVAGPDGFIKNQYRKFNIRSEGLT 510 Query: 424 TQDDCAMMRMVLERRFSQLI----KNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 DD AMMR VL+RRF +L+ + + K ++ P WPD+VI+DGG+GQL+AA Sbjct: 511 PGDDYAMMREVLQRRFKRLVTSQAEGDGEAAAKAKPKDDDVPQWPDLVIIDGGRGQLNAA 570 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 + L + + +++T++ +AKGP R AG E F+ +A+ L RDP+LYFIQRLRDEAHR Sbjct: 571 REALSGIGLTDQVTLLGVAKGPDRDAGRETLFLPDRDAIKLEPRDPVLYFIQRLRDEAHR 630 Query: 540 FAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 F I +HR RKK L EI GIGP RKR LL FGT+K I R+S L + GIS + Sbjct: 631 FVIGSHRTLRKKDIREAGLQEIPGIGPTRKRALLLHFGTLKEIERASIADLGKVPGISAE 690 Query: 599 IACKIYNHFH 608 A +I+ FH Sbjct: 691 SAKRIFEFFH 700 >gi|114569323|ref|YP_756003.1| excinuclease ABC subunit C [Maricaulis maris MCS10] gi|119367665|sp|Q0ARM2|UVRC_MARMM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|114339785|gb|ABI65065.1| excinuclease ABC, C subunit [Maricaulis maris MCS10] Length = 633 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 274/611 (44%), Positives = 387/611 (63%), Gaps = 17/611 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+M G VLYVGKA NL+ R+ +Y + H++RI MI + F VT Sbjct: 34 NLPPKPGVYRMFGEDGAVLYVGKARNLKNRVSNYANGRGHSNRIALMIGLTRKMEFVVTQ 93 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLEAN+IK LKPRFNILLRDDKSFPYILI H L KHR + +G YFGP Sbjct: 94 TETEALLLEANLIKSLKPRFNILLRDDKSFPYILIRKDHPAAQLTKHRGARKAKGDYFGP 153 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 FASV AV +T+N+LQ+ F +R+C+DSV+ R+R C+L QIKRC+GPC I Y E V Sbjct: 154 FASVGAVNQTLNTLQKAFLVRTCSDSVYEGRSRACMLHQIKRCAGPCVDLIDPAAYDELV 213 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 +A FL G ++ L+E + M QA+ D+E+A RDR+ A++ + + Sbjct: 214 GQATDFLRGRSNALREDLQTRMAQASEAMDFETAAKLRDRIRAIAAVTTDQGINPDGVEE 273 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D +++ + +C+Q FF GQN G +FF + D E+ A++L+ F+ QFY DKP P Sbjct: 274 ADVVAVHSDGGKSCVQVFFFRAGQNWGNQSFFPRHDMEAEPAEVLAAFIAQFYDDKPAPA 333 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 ILLS E EE LL + + KV + P++GEKRK++++ L NA + ++++ S Sbjct: 334 LILLSHEIEEAELLGEALSLRTERKVSLHTPRRGEKRKLVDRTLTNAREALARRMAESAS 393 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 +LK + F L +P+RIE+YDNSHI G +A+G M+V G GF KN YR+FN+ +D Sbjct: 394 QTQLLKGVQRVFDLTDLPQRIEVYDNSHIQGTNALGAMIVAGPEGFEKNHYRRFNMKGDD 453 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 T DD AMM+ +L+RRFS+L+K ++ PD+V++DGGKGQLS+ Sbjct: 454 AATNDDFAMMKAMLKRRFSRLLKERDD-----------GAPVPDLVLIDGGKGQLSSVME 502 Query: 482 VLKKLNVENR--ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 + ++L + + ITI +IAKGP+R AG E F++ L M+DP+LY++QRLRDEAHR Sbjct: 503 IAEELGITDETGITIAAIAKGPERDAGREAFYLPGKPPFKLPMKDPVLYYLQRLRDEAHR 562 Query: 540 FAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAI HR +RKK +PLD I+GIGP RK+ LL FG+ K + ++ L +++GIS+ Sbjct: 563 FAIGGHRAKRKKQMTDNPLDGIDGIGPSRKKALLAHFGSAKAVRNAALADLEAVDGISRA 622 Query: 599 IACKIYNHFHK 609 +A KI++ F K Sbjct: 623 MARKIHDWFQK 633 >gi|163732842|ref|ZP_02140287.1| excinuclease ABC subunit C [Roseobacter litoralis Och 149] gi|161394202|gb|EDQ18526.1| excinuclease ABC subunit C [Roseobacter litoralis Och 149] Length = 625 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 268/611 (43%), Positives = 385/611 (63%), Gaps = 14/611 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+MLD RVLYVGKA NL+ R+ SY HT RI MIS ++ F Sbjct: 23 LKTLDVSPGVYRMLDSESRVLYVGKARNLRARVSSYARPTGHTPRIARMISLTASMMFLT 82 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N+IK+LKP+FN+LLRDDKSFP IL++ H P + KHR + +GSY+ Sbjct: 83 TKTETEALLLEQNLIKQLKPKFNVLLRDDKSFPNILVSADHDYPQIKKHRGAKKEKGSYY 142 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPFAS AV +T+N LQR F LR C++S+F RTRPCL +QIKRCS PC G+IS ++Y + Sbjct: 143 GPFASAGAVNRTLNQLQRVFLLRDCSNSMFESRTRPCLQYQIKRCSAPCVGKISPQEYRQ 202 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240 V +A+KFL+G +++ ++AR+M+QA+ ++E A RDR+ AL+ +Q Sbjct: 203 TVKDAEKFLTGRTTDIQARLARDMSQASEAMEFERAAALRDRIKALTQVQTAQGINPKGV 262 Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 D +L+ AC+Q F QN G ++ + ++ A++L FL QFY + Sbjct: 263 AEADIVALHLENGQACVQVFFIRANQNWGNRDYYPRVGADVDAAEVLEAFLGQFYDTREP 322 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P I+LS + E L+ + + G KV++ VPK+GEK ++I+ AL NA S +K++ Sbjct: 323 PRQIILSSDIENPDLMADALSGKLGRKVELIVPKRGEKAELIDGALRNARESLARKMAET 382 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + ++K + F L P+R+E+YDNSHI G AVG M+V G GF+KNQYRKFN+ Sbjct: 383 ATQARLMKGLAEAFDLKTPPERVEVYDNSHIQGAFAVGAMIVAGTEGFLKNQYRKFNIRG 442 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 D+ DD MM+ VL RRF +LIK + E WPD++++DGG GQ+SA Sbjct: 443 EDLTPGDDFGMMKEVLTRRFKRLIKED---------PERKEGHWPDLLLIDGGAGQVSAV 493 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 ++++ VE+ I ++ +AKG R AG E+F+ L DP+LYFIQR+RDEAHR Sbjct: 494 ASIMREYGVED-IPMVGVAKGVDRDAGKEEFYRTGSRPFALRHNDPVLYFIQRMRDEAHR 552 Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAI THR +R KA +PLD++ G+G RKR LL FG+ K ++R++ L +++G+S Sbjct: 553 FAIGTHRAKRSKAVGATPLDDVPGVGAARKRALLAHFGSAKAVARANLTDLKAVDGVSGA 612 Query: 599 IACKIYNHFHK 609 +A KIY++FH+ Sbjct: 613 LAEKIYDYFHE 623 >gi|84515713|ref|ZP_01003074.1| excinuclease ABC subunit C [Loktanella vestfoldensis SKA53] gi|84510155|gb|EAQ06611.1| excinuclease ABC subunit C [Loktanella vestfoldensis SKA53] Length = 622 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 262/609 (43%), Positives = 377/609 (61%), Gaps = 14/609 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY+MLD RVLYVGKA NL+ R+ +Y H+ RI MIS+ ++ F T Sbjct: 22 SLDSSPGVYRMLDADSRVLYVGKARNLRARVSNYARPGPHSPRIARMISETASMMFLTTR 81 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLE N+IK+LKPR+N+LLRDDKSFP IL+T H P + KHR + + +G Y+GP Sbjct: 82 TETEALLLEQNLIKQLKPRYNVLLRDDKSFPNILVTKDHDFPMIRKHRGAKSQKGDYYGP 141 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 FA AV +T++ LQR F LR+C+DS F RTRPCL +QIKRCSGPC G IS Y V Sbjct: 142 FAGAGAVNRTLSQLQRVFLLRNCSDSDFETRTRPCLQYQIKRCSGPCCGMISKPDYALSV 201 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 EA+ FL G ++E +A M A+ + +E A RDR+ AL+ +Q+ Sbjct: 202 KEAENFLQGRTKGIQEALATQMQAASEEMLFERAAALRDRIKALTQVQSAQGINPQNTAE 261 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D +L+ + AC+Q F QN G ++ + E A+++ F+ QFY + P Sbjct: 262 ADVIALHTDGGQACVQVFFIRANQNWGNHDYYPRISGEEDMAEVMEAFVGQFYAGREPPR 321 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 ++LS + L+ + ++ G K++I VP++GEK ++++ AL NA S +K+S + Sbjct: 322 MLILSHGLDNDDLMAAALAEKAGRKIEIVVPQRGEKAELVQNALRNARESLARKMSETAT 381 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 +LK + F LP +P+RIE+YDNSHI G AVG MVV G +GF KNQYRKFN+ D Sbjct: 382 QSRLLKGLAEAFDLPKVPQRIEVYDNSHIQGAHAVGAMVVAGPDGFDKNQYRKFNIRGED 441 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 + DD MM+ VL RRF +LIK + + S +WPD++++DGG+GQ+SA + Sbjct: 442 LTPGDDFGMMKEVLTRRFQRLIKED---------PDRSTGTWPDLLLIDGGQGQVSAVRQ 492 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 ++ + V + I ++ +AKG R AG E+F + L DP+LYFIQR+RDE HRFA Sbjct: 493 IMDDMGVSD-IPMVGVAKGLDRDAGKEEFHRTGKPVMALRHNDPVLYFIQRMRDEVHRFA 551 Query: 542 ITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 I THR +R KA +PLD++ G+G RKR LL FG+ K ++R++ L +++G+S +A Sbjct: 552 IGTHRAKRSKAIGATPLDDVPGVGATRKRALLAHFGSAKAVARANLADLKAVDGVSANMA 611 Query: 601 CKIYNHFHK 609 IY++FH+ Sbjct: 612 QVIYDYFHE 620 >gi|254470518|ref|ZP_05083922.1| excinuclease ABC, C subunit [Pseudovibrio sp. JE062] gi|211960829|gb|EEA96025.1| excinuclease ABC, C subunit [Pseudovibrio sp. JE062] Length = 677 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 301/630 (47%), Positives = 407/630 (64%), Gaps = 25/630 (3%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M D G VLYVGKA +L+KR+ SY ++RI MI + F T Sbjct: 49 KRLPLGPGVYRMFDEDGEVLYVGKARSLKKRVTSYTRLQGQSNRIMRMIMATAAMEFVET 108 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+LLRDDKSFPYILI+ H+ PAL KHR + +G YFG Sbjct: 109 RTEPEALLLEANLIKRLRPRFNVLLRDDKSFPYILISADHEAPALIKHRGARIRKGDYFG 168 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV TIN++Q+ F +R+C+DS + +R+RPCLL+QIKRC+ PCTGEIS E Y Sbjct: 169 PFASAGAVNDTINAMQKAFLIRNCSDSYYSNRSRPCLLYQIKRCAAPCTGEISIEDYKGL 228 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + +K+++A+ M +A+ D+E A ++RDR+AALSH+Q+H Sbjct: 229 VAEAKSFLSGKSQLIKQELAQAMEKASENLDFEQAAVYRDRIAALSHVQSHQGINPQGIE 288 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+ Y C+Q FF GQN G +F K D ++IL FL QFY DKP P Sbjct: 289 EADVFATYQEGGQTCVQVFFFRTGQNWGNRAYFPKADKSYEPSEILESFLSQFYEDKPPP 348 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 +LLS + EE LL + + KV++ PK+GEKR+++E AL NA + ++L+ Sbjct: 349 RMVLLSHDLEEQDLLAEALTARANRKVEVATPKRGEKRELVEHALTNAKGALGRRLAETS 408 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +LK + F L P+RI+++DNSHI G +AVG M+V G +GF K QYRKFN+ Sbjct: 409 SQLKLLKGVAEAFGLDRTPRRIDVFDNSHISGTNAVGGMIVAGSDGFAKGQYRKFNIKSE 468 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNE--------------------ENLNFHPKKQEYSF 460 D+ DD MMR VL RRF++L K ++ Sbjct: 469 DLIPGDDYGMMREVLSRRFARLQKENPEGYEQAARFKAQSKASQEAKSDEQDIAPSNADI 528 Query: 461 PSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVL 520 P+WPD+V++DGGKGQLSA + L+++ + + I ++ IAKGP R AG EKFFV ++ +L Sbjct: 529 PAWPDLVLIDGGKGQLSAVRETLEEMGITD-IPLVGIAKGPDRDAGREKFFVTGEQSFML 587 Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVK 579 RDP+LYF+QR+RDEAHRFAI +HR RRKKA +PLDEI GIGP RKR+LL+ FGT K Sbjct: 588 PERDPVLYFVQRMRDEAHRFAIGSHRARRKKAIVANPLDEIAGIGPARKRVLLRHFGTAK 647 Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHK 609 +S++ + L ++ GIS+ IA IYNHFH+ Sbjct: 648 AVSKAGIDDLRAVSGISESIAKLIYNHFHE 677 >gi|209965179|ref|YP_002298094.1| excinuclease ABC, C subunit, putative [Rhodospirillum centenum SW] gi|209958645|gb|ACI99281.1| excinuclease ABC, C subunit, putative [Rhodospirillum centenum SW] Length = 694 Score = 573 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 276/610 (45%), Positives = 388/610 (63%), Gaps = 15/610 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P+ PGVY+ML G VLYVGKA NL++R+ +Y R+ M+++ + F T Sbjct: 95 TLPDRPGVYRMLSAEGDVLYVGKARNLKRRVTNYTQVAKLPVRLQRMVAETVTMEFVTTH 154 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TEVEALLLE+N+IKRL PR+N+LLRDDKSFP+ILIT H P L KHR + GSY+GP Sbjct: 155 TEVEALLLESNLIKRLMPRYNVLLRDDKSFPHILITGDHPFPQLTKHRGARDRAGSYYGP 214 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 FAS AV + + +LQR F +R+C D+VF RTRPCL FQIKRC+ PC G + Y V Sbjct: 215 FASAGAVNRVMTALQRAFQIRTCTDTVFASRTRPCLQFQIKRCTAPCVGRVGDAGYAAQV 274 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241 EAK FLSG + ++ ++AR M A ++E+A RDR+ AL+ IQ H D Sbjct: 275 AEAKSFLSGRSSEVQARLARAMQDAAEALEFETAAKLRDRIRALTAIQAHQDINVEGVED 334 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D + + + + CIQ FF G+N G +F D ++LS F+ QFY +K PE Sbjct: 335 ADVIAAHQDGGVTCIQVFFFRGGRNYGNRAYFPSHDKAQDTPEVLSAFVAQFYENKAAPE 394 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 +L+SE+ E +LL+ + + G++V + PK+G+KR++++ AL NA +H ++L+ S Sbjct: 395 LVLVSEDLPEHALLQEALSVRAGHRVALVAPKRGDKRRVVDHALTNAREAHGRRLAESGS 454 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 +L + F L P+RIE+YDNSHI G +AVG M+V G GF+K+ YRKFN+ Sbjct: 455 QAKLLAGVAEVFGLAEPPQRIEVYDNSHIQGTNAVGGMIVAGPEGFLKSAYRKFNIKDPA 514 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 DD AMMR VL RRF + +K + E + +WPD++++DGG+GQL+ A Sbjct: 515 AAG-DDYAMMREVLTRRFERALKED---------PERTGGTWPDLLLIDGGEGQLAVALE 564 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 VL +L +++ + + IAKGP R AG E+FF+ L+ + P+LY++QRLRDEAHRFA Sbjct: 565 VLAELGIDD-VPLAGIAKGPDRDAGRERFFLPGRPPFGLDPKSPVLYYLQRLRDEAHRFA 623 Query: 542 ITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 I THR RR+KA SPLDEI GIGP RK+ LL FG+ + +SR+ + LAS+EGIS+ +A Sbjct: 624 IGTHRARREKALGASPLDEIAGIGPRRKKALLHHFGSARAVSRAGLQDLASVEGISEAVA 683 Query: 601 CKIYNHFHKN 610 IY+HFH + Sbjct: 684 RIIYDHFHPD 693 >gi|146278891|ref|YP_001169050.1| excinuclease ABC subunit C [Rhodobacter sphaeroides ATCC 17025] gi|145557132|gb|ABP71745.1| Excinuclease ABC subunit C [Rhodobacter sphaeroides ATCC 17025] Length = 623 Score = 573 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 267/604 (44%), Positives = 369/604 (61%), Gaps = 14/604 (2%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+MLD +VLYVGKA NL+ R+ +Y + H+ RI MI + ++ F T TE E Sbjct: 28 SPGVYRMLDAQSQVLYVGKARNLRARVSNYARPSGHSGRIARMIRETASMMFLTTRTETE 87 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE N+IK+LKPR+N+LLRDDKSFP ILI H P L KHR + +GSYFGPFAS Sbjct: 88 ALLLEQNLIKQLKPRYNVLLRDDKSFPNILIAKDHAFPMLKKHRGKKSEKGSYFGPFASA 147 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 AV +T+N LQR F LR+C+D+ F RTRPCLL+QIKRCS PC G I+ E Y + +A+ Sbjct: 148 GAVNRTLNQLQRVFLLRTCSDATFDSRTRPCLLYQIKRCSAPCVGRITPEDYAGMIGDAE 207 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCF 245 +FL G ++ +A M A+ ++E A RDR+ AL+ +Q+ D Sbjct: 208 RFLQGRTTKVQANLAEQMRAASEAMEFERAAALRDRIKALTQVQSSQGINPRGVAEADVI 267 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILL 305 +++ AC+Q F Q+ G F+ +T + + +IL FL QFY DK P ILL Sbjct: 268 AVHLEGGQACVQVFFIRANQSWGNRDFYPRTGAGAEEPEILEAFLAQFYDDKEPPRMILL 327 Query: 306 SEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365 S + L+ ++ G KV + VP++GEK +++E A NA S ++++ + + Sbjct: 328 SHPVDNPDLVAQLLSQRAGRKVTLGVPQRGEKAELVENAARNARESLARRMAESATQNKL 387 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 L + F L P RIE+YDNSHI G +AVG M+V G GF+K+QYRKFN+ Sbjct: 388 LAGLAEAFDLDAPPCRIEVYDNSHIQGTNAVGGMIVAGPEGFLKSQYRKFNIRGAAGAQG 447 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD MM+ VL RRF +L+K + E +WPD++++DGG GQ+SA Q +L++ Sbjct: 448 DDFGMMKEVLTRRFERLLKED---------PERKSDAWPDLLLIDGGAGQVSAVQEILQE 498 Query: 486 LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545 L V++ I I +AKG R AG E+F L M DP+LYF+QRLRDEAHR+AI H Sbjct: 499 LGVDD-IPFIGVAKGIDRDAGKEEFHRPGEPPFALRMNDPVLYFVQRLRDEAHRWAIGAH 557 Query: 546 RKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 R +R KA +PLDEI G+G RKR LL FG+ K +SR+ L ++EGIS+ +A I+ Sbjct: 558 RAKRAKAVSATPLDEIPGVGAARKRALLAHFGSAKAVSRAGLPDLCAVEGISETLAQTIH 617 Query: 605 NHFH 608 +HFH Sbjct: 618 DHFH 621 >gi|240850242|ref|YP_002971635.1| excinuclease ABC subunit C [Bartonella grahamii as4aup] gi|240267365|gb|ACS50953.1| excinuclease ABC subunit C [Bartonella grahamii as4aup] Length = 659 Score = 573 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 309/610 (50%), Positives = 409/610 (67%), Gaps = 5/610 (0%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+M+ G +LY+GKA NL+KR+ +Y H +RIT MI ++ F VT Sbjct: 49 HLPHKPGVYRMIGKNGDILYIGKARNLKKRVSNYTREQGHNNRITRMIRATYHMEFIVTH 108 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLEAN+IKRL P FN+LLRDDKSFPYI+ITD H++P LYKHR + T + YFGP Sbjct: 109 TETEALLLEANLIKRLHPHFNVLLRDDKSFPYIMITDDHRVPGLYKHRGARTRKAHYFGP 168 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 FAS AV +T++ LQR F LR+C DSVF +RTRPCLL+QIKRCS PCT EIS Y E + Sbjct: 169 FASAGAVTQTVHVLQRAFLLRTCTDSVFENRTRPCLLYQIKRCSAPCTHEISDNDYKELL 228 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241 AK FLSG + ++K + + M++A D+E A +RDRL+ALSHIQ+H Sbjct: 229 RGAKAFLSGKDQSVKNNMVQAMHKAAENLDFEQAASYRDRLSALSHIQSHQGINPQTIKE 288 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D F++ + + CIQ FF GQN G +F K D + +IL+ FL QFY DKP P+ Sbjct: 289 ADVFAIAQKEGMTCIQVFFFRMGQNWGNRAYFPKADPSFSCTEILASFLAQFYDDKPLPK 348 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 +ILLSEE EE +LL + + +KV +++PKQGE++ ++ A +NAH + KLS + Sbjct: 349 SILLSEEIEEKTLLTEALSLKANHKVSLSLPKQGERKTLVNHAYLNAHEALEHKLSETAT 408 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 H +L+ K F LP P+RIE+YDNSHIMG +AVG M+V G+ GFVKNQYRKFN+ D Sbjct: 409 HTKLLQGLAKIFQLPFPPRRIEVYDNSHIMGTNAVGAMIVAGQMGFVKNQYRKFNIRSID 468 Query: 422 VKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 + DD MM+ V++RRFS+LIK ++ H K FP WPD++++DGG+GQ+++ Sbjct: 469 ITPGDDFGMMKEVIKRRFSRLIKEHDQPNRSHDIKDNDLFPIWPDLILIDGGEGQINSVH 528 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 +L +L + + T++ IAKG R AG E+FF+K L RDPILYF+QRLRDEAHRF Sbjct: 529 AILAELQLNDLFTVVGIAKGVDRHAGRERFFIKGIPPFTLPPRDPILYFLQRLRDEAHRF 588 Query: 541 AITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI HR +RKK +PLDEI IGP RKR LL FG+ K I+ +S E L + GIS I Sbjct: 589 AIGAHRIKRKKETFKNPLDEIENIGPTRKRALLHHFGSAKAIASASLEDLKKVTGISMTI 648 Query: 600 ACKIYNHFHK 609 A KI+NHFH+ Sbjct: 649 AQKIHNHFHE 658 >gi|197104065|ref|YP_002129442.1| UvrC, excinuclease ABC, C subunit [Phenylobacterium zucineum HLK1] gi|196477485|gb|ACG77013.1| UvrC, excinuclease ABC, C subunit [Phenylobacterium zucineum HLK1] Length = 662 Score = 573 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 283/609 (46%), Positives = 391/609 (64%), Gaps = 14/609 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P+ PGVY+M+ G VLYVGKA +L+KR+ Y HT RI HM+ + F T Sbjct: 63 RLPDRPGVYRMIGEDGEVLYVGKARSLKKRVLQYAQGRFHTQRIAHMVDLTRAMEFVTTR 122 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE N+IK+LKPRFN+LLRDDKSFP I+I H P L KHR + +I+G YFGP Sbjct: 123 TETDALLLEINLIKQLKPRFNVLLRDDKSFPEIVIRRDHAAPQLRKHRGAHSIKGDYFGP 182 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 FAS AV +T+N+LQ+ F LRSC+DSV+ RTRPC+L QI+RCS PCTG IS E Y V Sbjct: 183 FASAWAVNRTLNTLQKAFLLRSCSDSVYETRTRPCMLHQIRRCSAPCTGLISLEDYNALV 242 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241 EA FL G + + E++A M A ++E A RDR+ AL+ + + Sbjct: 243 DEAGAFLRGKSRAVMERMAGEMQAAAEDLEFERAARLRDRIRALASVAQEQQINPETVDE 302 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D F+L+ AC+Q FF GQN G +F + D + ++ FL QFY DKP P Sbjct: 303 ADVFALHAEGGQACVQVFFFRAGQNWGNRAYFPRVDKSDEDPDVMGAFLGQFYDDKPIPR 362 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 IL++ E LL +F ++ G KV+I+ P++GEKR+I++ AL NA + +K++ + Sbjct: 363 MILVNVVPAECELLSEAFCQKSGRKVEISRPQRGEKRQIVQHALTNAREALGRKMAESSA 422 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 +L + F L P+RIE+YDNSHIMG +AVG M+V G GF K+QYRKFN+ ++ Sbjct: 423 QSKLLAGVCEAFGLEGSPERIEVYDNSHIMGTNAVGGMIVAGPEGFQKSQYRKFNIRSSE 482 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 + DD MMR VL RRFS+L+K EE + PD+V++DGG+GQL AA Sbjct: 483 LTPGDDYGMMREVLRRRFSRLVKEEEEGGEAVR---------PDLVLIDGGRGQLDAAME 533 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 V+ L V++ I ++ +AKGP R AG+E+FF+ E +L + P+LY++QRLRDEAHRFA Sbjct: 534 VMADLGVDD-IPVVGVAKGPDRDAGLERFFMPGKEPFMLEPKSPVLYYLQRLRDEAHRFA 592 Query: 542 ITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 I +HR RR +PLDEI+G+GP RKR LL +FG+ + +SR+S LA +EG+S+ +A Sbjct: 593 IGSHRTRRAMDMKKNPLDEIDGVGPGRKRALLHTFGSARGVSRASVADLAKVEGVSEALA 652 Query: 601 CKIYNHFHK 609 +IY+HFHK Sbjct: 653 QRIYDHFHK 661 >gi|90422420|ref|YP_530790.1| excinuclease ABC subunit C [Rhodopseudomonas palustris BisB18] gi|119367825|sp|Q21AW5|UVRC_RHOPB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|90104434|gb|ABD86471.1| Excinuclease ABC subunit C [Rhodopseudomonas palustris BisB18] Length = 699 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 290/610 (47%), Positives = 389/610 (63%), Gaps = 5/610 (0%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 P PGVY+ML+ A VLYVGKA N++KR+ SY H RI+ MI+ ++ T TE Sbjct: 91 PTSPGVYRMLNAASDVLYVGKAKNVKKRLASYARPTGHVVRISRMIAATVSVEIISTATE 150 Query: 67 VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126 EALLLEAN+IK+L+PRFN+LLRDDKSFPYILIT H P + KHR + + G YFGPFA Sbjct: 151 TEALLLEANLIKQLRPRFNVLLRDDKSFPYILITGDHWAPQIIKHRGAQSRPGRYFGPFA 210 Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186 SV +V +TI +LQR F +RSC D+ F RTRPCLL+QIKRC+GPCTGEI Y V E Sbjct: 211 SVGSVNRTITALQRAFLMRSCTDAFFESRTRPCLLYQIKRCAGPCTGEIDFPGYTALVRE 270 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMD 243 A FLSG + +K+++A M +A+ + ++E+A ++RDRLAALS IQ+ D Sbjct: 271 ATDFLSGRSRLVKQELAGEMEKASAELEFETAALYRDRLAALSAIQSQQGINPRTVEEAD 330 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303 F+++ C++ FF GQN G +F + + T ++L+ FL QFY DK P+ I Sbjct: 331 VFAIHQEGGYFCVEVFFFRTGQNWGNRAYFPRAEKTFTVEEVLAAFLAQFYDDKAPPKQI 390 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 LLS EE LL + + G+KV+I P++GEK++++ AL NA + +KL+ + Sbjct: 391 LLSHRIEECELLAEALCIKSGHKVEILTPQRGEKKELVGHALTNAREALGRKLADTATQT 450 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 +L+ LPH PKRIE+YDNSHI G +AVG M+V G +GF+KNQYRKFN+ + Sbjct: 451 RLLQGLVTTLKLPHTPKRIEVYDNSHIQGTNAVGAMIVAGPDGFIKNQYRKFNIRSEGIT 510 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD MMR VLERRF +L+ K + P WPD+VI+DGG+GQL+A Q + Sbjct: 511 PGDDYGMMREVLERRFKRLLAPPPEAEAGKPKPDDEVPQWPDLVIIDGGRGQLNAVQEIF 570 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 + L + +T++++AKGP R AG E F+ + L RDP+LYFIQRLRDEAHRF I Sbjct: 571 QALGLST-VTLMAVAKGPDRDAGRETLFMPDRLPIKLEPRDPVLYFIQRLRDEAHRFVIG 629 Query: 544 THRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 +HRK RKK L EI GIGP RKR LL FGT+K I R+S L + GIS + A + Sbjct: 630 SHRKLRKKDIREAGLQEIPGIGPSRKRALLHHFGTLKEIERASLGDLGKVPGISAESAKR 689 Query: 603 IYNHFHKNTS 612 I+++FH Sbjct: 690 IFDYFHPQPG 699 >gi|121602255|ref|YP_988831.1| excinuclease ABC subunit C [Bartonella bacilliformis KC583] gi|120614432|gb|ABM45033.1| excinuclease ABC, C subunit [Bartonella bacilliformis KC583] Length = 658 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 307/610 (50%), Positives = 416/610 (68%), Gaps = 5/610 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +P PGVY+M + G VLYVGKA NL+KR+ +Y H + H +RI MI +++ F VT Sbjct: 49 KHLPHKPGVYRMFNEYGDVLYVGKARNLKKRVSNYTHEHGHNNRIIRMIRATSHMEFVVT 108 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE+EALLLEAN+IKRL+PRFNILLRDDKSFPYI+ITD H+IPALYKHR + T + YFG Sbjct: 109 HTEIEALLLEANLIKRLQPRFNILLRDDKSFPYIIITDDHRIPALYKHRGARTRKAHYFG 168 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TIN LQR F LR+C DSV +RTRPCLL+QIKRCS PCT EI++ Y++ Sbjct: 169 PFASASAVTQTINVLQRAFLLRTCTDSVLENRTRPCLLYQIKRCSAPCTNEINNSDYIKL 228 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EA+ FLSG + ++K+ + + M++A D+E A +RDRL+ALSH+Q+H Sbjct: 229 VKEARAFLSGKSQSIKQDMVQAMHKAAENLDFERAANYRDRLSALSHVQSHQGINPRTIE 288 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F++ + CIQ FF GQN G +F K D ++A+IL+ F+ QFY +KP P Sbjct: 289 EADVFAIAQQGGITCIQVFFFRMGQNWGNQAYFPKADPSFSSAEILASFIAQFYDNKPIP 348 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + ILLSEE EE LL + + K+ +++P+ GE++ +I A NAH + +KLS Sbjct: 349 KLILLSEEIEEAVLLTEALSLKAHCKISLSLPRNGERKTLINHAYTNAHEALGRKLSETS 408 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 ++ + ++ + F LP P R+E+YDNSHIMG +AVG M+V + GF+KNQYRKFN+ Sbjct: 409 TYTKLFQNLAEIFQLPRTPNRLEVYDNSHIMGTNAVGIMIVANQTGFIKNQYRKFNIRST 468 Query: 421 DVKTQDDCAMMRMVLERRFSQLIK-NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 D+ DD MM+ V+ERRFS+LIK + E SFP WPD++++DGG+GQ + Sbjct: 469 DITPGDDLGMMKEVIERRFSRLIKTYGLPTQNKDIEDENSFPMWPDLILIDGGEGQTNIV 528 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 + +L KL V++ +T++ IAKG R AG E+FF++ + L+ RDPILYF+QRLRDEAHR Sbjct: 529 RTILSKLGVDDLVTVVGIAKGTDREAGRERFFIQGKPSFTLSPRDPILYFLQRLRDEAHR 588 Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAI THR +RKK +PLDEIN IGP RKR LL FG+ K I+ +S E L + GIS Sbjct: 589 FAIGTHRTKRKKETFKNPLDEINNIGPTRKRALLNYFGSTKAIANASVEDLTKVSGISIT 648 Query: 599 IACKIYNHFH 608 IA I+NHF+ Sbjct: 649 IAQNIHNHFN 658 >gi|297537903|ref|YP_003673672.1| excinuclease ABC subunit C [Methylotenera sp. 301] gi|297257250|gb|ADI29095.1| excinuclease ABC, C subunit [Methylotenera sp. 301] Length = 599 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 227/611 (37%), Positives = 331/611 (54%), Gaps = 24/611 (3%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PGVY+M++ V+YVGKA +L+KR+ SY + N + R M+S I I TV Sbjct: 8 LKNLPNLPGVYRMINATDEVIYVGKAKDLKKRVSSYFNKNLPSPRTRMMVSHIVKIETTV 67 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T E EALLLE N+IK L PR+N+L RDDKS+PYI+IT P L HR + YF Sbjct: 68 THNEAEALLLENNLIKGLMPRYNVLFRDDKSYPYIVITGDDS-PRLAFHRGTQRKGNQYF 126 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF + AV ++I LQ+ F LR+C ++VF +R+RPCL QI+RC+ PC G IS E Y Sbjct: 127 GPFPNSVAVRESIQLLQKVFKLRTCENTVFANRSRPCLQHQIERCTAPCVGLISDENYKN 186 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IY 239 VH+A FL G + + + + MN A ++YE A++ RDR+ AL +Q Sbjct: 187 DVHQAAMFLQGKTNEVIDALGARMNTAAANQEYEMAVVFRDRMQALRQVQAKQFVSDFNV 246 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 + D + + CI G++ G ++ K T + FL Q Y + Sbjct: 247 SDADVIACAELQGQHCINLVMIRGGRHLGDRSYMPKNTEGETLETSMEAFLAQHYVAQNT 306 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P I++ + E L E +Q G KVKI G+KR ++ A NA + Q+ +T Sbjct: 307 PPLIVVGVKIETAVL-EEVLSEQAGRKVKINTNPIGDKRVWLKMAQTNADLALGQRAATS 365 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + L + LP +RIE +D SH MG + VG VV ++YR++N+ Sbjct: 366 ANQTAKLLALREALHLPDNTERIECFDISHTMGEATVGSCVVFDRGDMQNSEYRRYNV-- 423 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A MR VL RR+ ++ E PD++ +DGGKGQL A Sbjct: 424 TGITPGDDYAAMRDVLTRRYKKVAAGE--------------GVRPDLIFIDGGKGQLGVA 469 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQRLRDEAH 538 V+ ++ +E+ I ++ IAKG +R G+E F GE L L + L+ +Q++RDEAH Sbjct: 470 VEVMAEVGLED-ILLVGIAKGEERRPGLETMIFSDTGEMLNLEKDNKGLHLLQQIRDEAH 528 Query: 539 RFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR +R KA +S L++I GIG R++ LL FG + + +S + +A +EGIS+ Sbjct: 529 RFAITGHRAKRAKARLHSSLEDIEGIGAKRRKALLTRFGGLDGVKGASIDEIAQVEGISQ 588 Query: 598 KIACKIYNHFH 608 +A KIY H Sbjct: 589 SLAEKIYGELH 599 >gi|114705636|ref|ZP_01438539.1| excinuclease ABC subunit C [Fulvimarina pelagi HTCC2506] gi|114538482|gb|EAU41603.1| excinuclease ABC subunit C [Fulvimarina pelagi HTCC2506] Length = 716 Score = 572 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 300/625 (48%), Positives = 402/625 (64%), Gaps = 19/625 (3%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M G VLYVGKA +L+KR+ SY HT RI MI + F T Sbjct: 92 KRLPNQPGVYRMFGSDGDVLYVGKARSLKKRVASYARLGGHTQRIARMIRLTRQMEFVTT 151 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRLKPRFN+L+RDDKSFPYIL+TD H+ PA+ KHR + +GS+FG Sbjct: 152 RTETEALLLEANLIKRLKPRFNVLMRDDKSFPYILVTDDHQAPAIVKHRGARNRKGSFFG 211 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV++TINSLQR F LR+C DSVF RTRPCLL QIKRC+GPCTGEIS E Y Sbjct: 212 PFASAGAVDRTINSLQRAFLLRTCTDSVFESRTRPCLLHQIKRCAGPCTGEISQEDYRSL 271 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V +AK FLSG + +KE +A M A+ D+E A + RDRLAALSH+ +H Sbjct: 272 VKQAKGFLSGRSGQVKEAMAEQMTSASDDLDFERAALFRDRLAALSHVSSHQGINPQSVE 331 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ L C+Q FF GQN G +F K D +L F+ QFY DKP P Sbjct: 332 EADVFAIHQEGGLTCVQVFFFRTGQNWGNRAYFPKADPSLEPDAVLGAFIAQFYDDKPAP 391 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 IL + ++ +LL + + KV+I P +G KR +++ A NA + +KL+ Sbjct: 392 RLILSQVKLDDEALLAEALAIKAERKVRIEKPARGAKRDLVDHAASNAKEALGRKLAETS 451 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ + F+L P+RIE++DNSHIMG +A+G M+V G GFVKNQYRKFN+ Sbjct: 452 SQARLLEGLKETFSLERTPRRIEVFDNSHIMGTNAIGAMIVAGPEGFVKNQYRKFNIKST 511 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKN--------------EENLNFHPKKQEYSFPSWPDV 466 ++ DD MM+ V+ RRFS+LIK+ + ++ + FP+WPD+ Sbjct: 512 EITPGDDFGMMKEVMTRRFSRLIKDHADEMPGAKPEPAPDTEIDEPEDLADTPFPAWPDL 571 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526 V++DGGKGQ+SA + +L++L + +++ I +AKG R AG E+F + L RDP+ Sbjct: 572 VLIDGGKGQMSAVRSILEELGIADKVMTIGVAKGVDREAGRERFIQGAKD-FSLPPRDPV 630 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 LYF+QR+RDEAHRFAI THR +RKK +PLDEI GIGP RKR LLQ FGT K +SR+ Sbjct: 631 LYFVQRMRDEAHRFAIGTHRAKRKKEMIKNPLDEIAGIGPTRKRALLQHFGTAKAVSRAG 690 Query: 586 PETLASIEGISKKIACKIYNHFHKN 610 L +++GIS+ IA +Y+HFH+N Sbjct: 691 LPDLRAVDGISETIAKLVYDHFHEN 715 >gi|254466793|ref|ZP_05080204.1| excinuclease ABC, C subunit [Rhodobacterales bacterium Y4I] gi|206687701|gb|EDZ48183.1| excinuclease ABC, C subunit [Rhodobacterales bacterium Y4I] Length = 633 Score = 572 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 265/611 (43%), Positives = 387/611 (63%), Gaps = 15/611 (2%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + + PGVY+MLD RVLYVGKA NL+ R+ +Y N + RI MI+ ++ F T Sbjct: 33 KTLDASPGVYRMLDADSRVLYVGKARNLKARVSNYTRPGN-SPRIERMIALTASMMFLTT 91 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLE N+IK+LKP++N+LLRDDKSFP IL+ H P + KHR + +GSYFG Sbjct: 92 RTETEALLLEQNLIKQLKPKYNVLLRDDKSFPNILVAKDHAFPQIKKHRGARKQKGSYFG 151 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +T+N LQ+ F LR+C+DS+F RTRPCL +QIKRCS PCTG IS Y Sbjct: 152 PFASAGAVNRTLNQLQKAFLLRNCSDSMFETRTRPCLQYQIKRCSAPCTGLISEADYAAS 211 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--- 240 V +A++FLSG + ++E++A M A+ ++E A RDR+ AL+ +Q+ Sbjct: 212 VRDAERFLSGRSTKVQEELAEQMMAASEAMEFERAAALRDRIKALTQVQSSQGINPRGVA 271 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D L+ + AC+Q F QN G F+ + D++++ A+I+ FL QFYT+K P Sbjct: 272 EADVIGLHLERGQACVQVFFIRANQNWGNQDFYPRVDADNSPAEIMEAFLGQFYTNKEPP 331 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 ++LS+ E L+E + + KV++ VP++GEK +++ A+ NA S ++++ Sbjct: 332 RQLILSDAIENADLMEQALSESADRKVELLVPQRGEKTELVAFAVRNARESLARRMAESA 391 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 + +L+ + F L P+RIE+YDNSHI G +AVG M+V+G GF+KN YRKFN+ + Sbjct: 392 TQAKLLRGLAEAFGLEGPPQRIEVYDNSHIQGTNAVGGMIVMGPEGFLKNAYRKFNIRGD 451 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 D+ DD MM+ VL RRFS+L+K + + WPD++++DGG GQ+SA Sbjct: 452 DLVPGDDFGMMKEVLHRRFSRLLKED---------PDRDKGLWPDLLLIDGGAGQVSAVA 502 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 ++++ V++ I ++ +AKG R G E+F+ L DP+LYFIQR+RDEAHRF Sbjct: 503 EIMEEHGVQD-IPMVGVAKGVDRDHGKEEFYRPGAPVFALQRNDPVLYFIQRMRDEAHRF 561 Query: 541 AITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI THR +R KA +PLDE+ G+G RKR LL FG+ K +SR++ L ++EGIS+ + Sbjct: 562 AIGTHRAKRAKAVSATPLDEVPGVGASRKRALLAHFGSAKAVSRANLSDLKAVEGISEAL 621 Query: 600 ACKIYNHFHKN 610 A +IY+HFH + Sbjct: 622 AERIYDHFHSS 632 >gi|221640567|ref|YP_002526829.1| excinuclease ABC subunit C [Rhodobacter sphaeroides KD131] gi|221161348|gb|ACM02328.1| UvrABC system protein C [Rhodobacter sphaeroides KD131] Length = 607 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 267/612 (43%), Positives = 374/612 (61%), Gaps = 14/612 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+MLD +VLYVGKA NL+ R+ +Y + H+ RI MI + ++ F Sbjct: 6 LKTLDGSPGVYRMLDAQSQVLYVGKARNLRARVSNYARPSGHSGRIARMIRETASMMFLT 65 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N+IK+LKPR+N+LLRDDKSFP ILI H P L KHR + +GSYF Sbjct: 66 TRTETEALLLEQNLIKQLKPRYNVLLRDDKSFPNILIAKDHPFPMLKKHRGKKSEKGSYF 125 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPFAS AV +T+N LQR F LR+C+D+ F RTRPCLLFQIKRCS PC G + +E Y E Sbjct: 126 GPFASAGAVNRTLNQLQRVFLLRTCSDATFESRTRPCLLFQIKRCSAPCVGRVPAEDYAE 185 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240 + +A++FL G ++ +A M A+ ++E A RDR+ AL+ +Q+ Sbjct: 186 LIGDAERFLQGRTTKVQANLAEQMQAASEAMEFERAAALRDRIKALTQVQSSQGINPRGV 245 Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 D +++ AC+Q F Q+ G FF +T + + +IL FL QFY DK Sbjct: 246 AEADVIAVHLEGGQACVQVFFIRANQSWGNRDFFPRTGAGAEEPEILEAFLAQFYDDKEP 305 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P ILLS + L+ ++ G KV + VP++GEK +++E A NA S ++++ Sbjct: 306 PRMILLSHPVDNPDLVGQLLSERAGRKVTLGVPQRGEKAELVENAARNARESLARRMAES 365 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + +L + F L PKRIE+YDNSHI G +AVG M+V G GF+K+QYRKFN+ Sbjct: 366 ATQNRLLAGLAEAFELDAAPKRIEVYDNSHIQGTNAVGGMIVAGPEGFLKSQYRKFNIRG 425 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 DD MM+ VL RRF +L+K + E +WPD++++DGG GQ+SA Sbjct: 426 AAGAQGDDFGMMKEVLTRRFERLLKED---------PERKTDAWPDLLLIDGGAGQVSAV 476 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 Q +L++L V++ + I +AKG R AG E+F L M DP+LYF+QRLRDEAHR Sbjct: 477 QEILQELGVDD-VPFIGVAKGIDRDAGKEEFHRPGEPPFALRMNDPVLYFVQRLRDEAHR 535 Query: 540 FAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 +AI HR +R KA +PLDEI G+G RKR LL FG+ K ++R+ L ++EGIS+ Sbjct: 536 WAIGAHRAKRAKAVSATPLDEIPGVGAARKRALLAHFGSAKAVARAGVPDLCAVEGISET 595 Query: 599 IACKIYNHFHKN 610 +A I+++FH + Sbjct: 596 MAQSIHDYFHGS 607 >gi|77464655|ref|YP_354159.1| excinuclease ABC subunit C [Rhodobacter sphaeroides 2.4.1] gi|90111760|sp|Q3IYX6|UVRC_RHOS4 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|77389073|gb|ABA80258.1| Excinuclease ABC subunit C [Rhodobacter sphaeroides 2.4.1] Length = 623 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 267/612 (43%), Positives = 374/612 (61%), Gaps = 14/612 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+MLD +VLYVGKA NL+ R+ +Y + H+ RI MI + ++ F Sbjct: 22 LKTLDGSPGVYRMLDAQSQVLYVGKARNLRARVSNYARPSGHSGRIARMIRETASMMFLT 81 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N+IK+LKPR+N+LLRDDKSFP ILI H P L KHR + +GSYF Sbjct: 82 TRTETEALLLEQNLIKQLKPRYNVLLRDDKSFPNILIAKDHPFPMLKKHRGKKSEKGSYF 141 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPFAS AV +T+N LQR F LR+C+D+ F RTRPCLLFQIKRCS PC G + +E Y E Sbjct: 142 GPFASAGAVNRTLNQLQRVFLLRTCSDATFESRTRPCLLFQIKRCSAPCVGRVPAEDYAE 201 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240 + +A++FL G ++ +A M A+ ++E A RDR+ AL+ +Q+ Sbjct: 202 LIGDAERFLQGRTTKVQANLAEQMQAASEAMEFERAAALRDRIKALTQVQSSQGINPRGV 261 Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 D +++ AC+Q F Q+ G FF +T + + +IL FL QFY DK Sbjct: 262 AEADVIAVHLEGGQACVQVFFIRANQSWGNRDFFPRTGAGAEEPEILEAFLAQFYDDKEP 321 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P ILLS + L+ ++ G KV + VP++GEK +++E A NA S ++++ Sbjct: 322 PRMILLSHPVDNPDLVGQLLSERAGRKVTLGVPQRGEKAELVENAARNARESLARRMAES 381 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + +L + F L PKRIE+YDNSHI G +AVG M+V G GF+K+QYRKFN+ Sbjct: 382 ATQNRLLAGLAEAFELDAAPKRIEVYDNSHIQGTNAVGGMIVAGPEGFLKSQYRKFNIRG 441 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 DD MM+ VL RRF +L+K + E +WPD++++DGG GQ+SA Sbjct: 442 AAGAQGDDFGMMKEVLTRRFERLLKED---------PERKTDAWPDLLLIDGGAGQVSAV 492 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 Q +L++L V++ + I +AKG R AG E+F L M DP+LYF+QRLRDEAHR Sbjct: 493 QEILQELGVDD-VPFIGVAKGIDRDAGKEEFHRPGEPPFALRMNDPVLYFVQRLRDEAHR 551 Query: 540 FAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 +AI HR +R KA +PLDEI G+G RKR LL FG+ K ++R+ L ++EGIS+ Sbjct: 552 WAIGAHRAKRAKAVSATPLDEIPGVGAARKRALLAHFGSAKAVARAGVPDLCAVEGISET 611 Query: 599 IACKIYNHFHKN 610 +A I+++FH + Sbjct: 612 MAQSIHDYFHGS 623 >gi|254491452|ref|ZP_05104631.1| excinuclease ABC, C subunit [Methylophaga thiooxidans DMS010] gi|224462930|gb|EEF79200.1| excinuclease ABC, C subunit [Methylophaga thiooxydans DMS010] Length = 613 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 244/612 (39%), Positives = 355/612 (58%), Gaps = 22/612 (3%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+MLD G V+YVGKA NL+KR+ SY T + M++QI I TV Sbjct: 19 LKNLTGRPGVYRMLDHTGTVIYVGKAKNLKKRVSSYFRKTGLTAKTQVMVAQIAAIETTV 78 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EAL+LE N+IK L PR+NILLRDDKS+PY+ I+ P L HR + G YF Sbjct: 79 THTENEALILENNLIKELMPRYNILLRDDKSYPYLFIS-GDTFPRLSVHRGAKRKVGKYF 137 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ S AV +++N LQ+ F +R C DS + +R+RPCL +QIKRC+ PC G +S E Y + Sbjct: 138 GPYPSAGAVRESLNLLQKLFPVRQCEDSYYYNRSRPCLQYQIKRCTAPCVGLVSEEDYKK 197 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--N 240 V FL G N + + ++ +M A+ + D+E A RD++ AL +Q Sbjct: 198 DVEHTILFLEGKNQQVMDDLSADMEAASQRLDFEQAAAIRDKVIALRRVQERQYVSSEQG 257 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D + +A ++ CF G+N G+ ++F K ++S+ ++L+ F+ Q+Y K P Sbjct: 258 EFDVLAAIVKDGMAVVEVCFIRGGRNLGSKSYFPKGSADSSPEELLAAFIPQYYLGKNVP 317 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 ILLS +A++ SLL+ + G+KV + PK+G+ + ++ A NA S Q+LS+ Sbjct: 318 SEILLSHQADDISLLQDVLQTESGHKVSLRQPKRGQGVRWMQMAKTNADISLAQRLSSRS 377 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 + + L +PKRIE +D SH G V VV G G +K YRKFN+ Sbjct: 378 NLLQRFEVLQDALELDELPKRIECFDISHTRGERTVASCVVFGLEGAIKADYRKFNIEG- 436 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 + DD A M L RRF++L K E PD++++DGGKGQ+ AQ Sbjct: 437 -ITGGDDYAAMNQALSRRFTRLQKGE--------------GKRPDLLLIDGGKGQIKEAQ 481 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGME-KFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 VL +LN+ + + I+ IAKGP+R G E F V + + L+ P L+ +Q++RDEAHR Sbjct: 482 EVLAELNLSD-LPILGIAKGPERKPGEESLFLVGRAGEVTLSADSPALHLLQQVRDEAHR 540 Query: 540 FAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAIT HR+RR KA S L+ I G+GP R++ LLQ FG ++ + R+ E L+ +EGISK Sbjct: 541 FAITGHRQRRAKARKTSTLEHIEGLGPKRRQKLLQQFGGLQEVQRAGVEDLSKVEGISKS 600 Query: 599 IACKIYNHFHKN 610 +A KIY+ FH + Sbjct: 601 LAQKIYDVFHGD 612 >gi|159043197|ref|YP_001531991.1| excinuclease ABC subunit C [Dinoroseobacter shibae DFL 12] gi|157910957|gb|ABV92390.1| excinuclease ABC [Dinoroseobacter shibae DFL 12] Length = 631 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 268/610 (43%), Positives = 378/610 (61%), Gaps = 14/610 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+MLD RVLYVGKA NL+ R+ +Y + H+ RI MIS+ ++ F Sbjct: 28 LKTLDGSPGVYRMLDAQSRVLYVGKARNLKARVSNYARPSGHSARIARMISETASMMFLT 87 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N+IK+LKPR+N+LLRDDKSFP IL+ H P + KHR +G+Y+ Sbjct: 88 TRTETEALLLEQNLIKQLKPRYNVLLRDDKSFPNILVAKDHAYPQIRKHRGRKATKGAYY 147 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPFAS AV +T+N LQ+ F LR+C+D++F RTRPCLL+QIKRCSGPC G IS E Y Sbjct: 148 GPFASAGAVNRTLNQLQKAFLLRNCSDAMFESRTRPCLLYQIKRCSGPCVGYISEEDYDA 207 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---Y 239 V +A++FLSG + ++E++A M +A ++E A RDR+ A++ +Q+ Sbjct: 208 SVRDAERFLSGKSTEVQERLAVQMTEAAEAMEFERAAALRDRIRAMTQVQSAQGINPRGV 267 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 + D +L+ AC+Q F QN G F+ +T + + +IL FL QFY K Sbjct: 268 SEADVIALHLENGQACVQVFFIRANQNWGNRDFYPRTGAGAEAPEILEAFLGQFYDQKDP 327 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P ILLS + L+ + ++ G KV+I VPK+GEK ++I A NA S ++++ Sbjct: 328 PRQILLSHPIDNHDLMADALGEKRGRKVEILVPKRGEKAELIAGAERNARESLARRMAES 387 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + +L+ + F L PKRIE+YDNSHI G AVG M+V G +GF+K+QYRKFN+ Sbjct: 388 ATQTKLLRGLAEAFDLDAPPKRIEVYDNSHIQGTDAVGAMIVSGPDGFLKSQYRKFNIRG 447 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 D+ DD MM+ VL+RRF +L+K + + WPD++++DGG GQ+SA Sbjct: 448 TDLTPGDDFGMMKEVLQRRFQRLLKEDPDRESEA---------WPDLLLIDGGAGQVSAV 498 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 +L L VE+ + I +AKG R AG E+F L DP+LYF+QRLRDEAHR Sbjct: 499 ADILGDLGVED-VPFIGVAKGVDRDAGKEEFHRPGARPTALRHNDPVLYFVQRLRDEAHR 557 Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAI THR +R K+ +PLD++ G+G RKR LL FG+ K +SR++ L ++EG+S Sbjct: 558 FAIGTHRAKRSKSVSRTPLDDVPGVGAKRKRALLAHFGSAKAVSRANLSDLKAVEGVSAT 617 Query: 599 IACKIYNHFH 608 +A IY+ FH Sbjct: 618 MAQTIYDFFH 627 >gi|126463495|ref|YP_001044609.1| excinuclease ABC subunit C [Rhodobacter sphaeroides ATCC 17029] gi|126105159|gb|ABN77837.1| Excinuclease ABC subunit C [Rhodobacter sphaeroides ATCC 17029] Length = 623 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 267/612 (43%), Positives = 373/612 (60%), Gaps = 14/612 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+MLD +VLYVGKA NL+ R+ +Y + H+ RI MI + ++ F Sbjct: 22 LKTLDGSPGVYRMLDAQSQVLYVGKARNLRARVSNYARPSGHSGRIARMIRETASMMFLT 81 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N+IK+LKPR+N+LLRDDKSFP ILI H P L KHR + +GSYF Sbjct: 82 TRTETEALLLEQNLIKQLKPRYNVLLRDDKSFPNILIAKDHPFPMLKKHRGKKSEKGSYF 141 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPFAS AV +T+N LQR F LR+C+D+ F RTRPCLLFQIKRCS PC G + +E Y E Sbjct: 142 GPFASAGAVNRTLNQLQRVFLLRTCSDATFESRTRPCLLFQIKRCSAPCVGRVPAEDYAE 201 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240 + +A++FL G ++ +A M A+ ++E A RDR+ AL+ +Q+ Sbjct: 202 LIGDAERFLQGRTTKVQANLAEQMQAASEAMEFERAAALRDRIKALTQVQSSQGINPRGV 261 Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 D +++ AC+Q F Q+ G FF +T + + +IL FL QFY DK Sbjct: 262 AEADVIAVHLEGGQACVQVFFIRANQSWGNRDFFPRTGAGAEEPEILEAFLAQFYDDKEP 321 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P ILLS + L+ ++ G KV + VP++GEK +++E A NA S ++++ Sbjct: 322 PRMILLSHPVDNPDLVGQLLSERAGRKVTLGVPQRGEKAELVENAARNARESLARRMAES 381 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + +L + F L PKRIE+YDNSHI G +AVG M+V G GF+K+QYRKFN+ Sbjct: 382 ATQNRLLAGLAEAFELDAAPKRIEVYDNSHIQGTNAVGGMIVAGPEGFLKSQYRKFNIRG 441 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 DD MM+ VL RRF +L+K + E +WPD++++DGG GQ+SA Sbjct: 442 AAGAQGDDFGMMKEVLTRRFERLLKED---------PERKTDAWPDLLLIDGGAGQVSAV 492 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 Q +L++L V++ + I +AKG R AG E+F L M DP+LYF+QRLRDEAHR Sbjct: 493 QEILQELGVDD-VPFIGVAKGIDRDAGKEEFHRPGEPPFALRMNDPVLYFVQRLRDEAHR 551 Query: 540 FAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 +AI HR +R KA +PLDEI G+G RKR LL FG+ K ++R+ L ++EGIS+ Sbjct: 552 WAIGAHRAKRAKAVSATPLDEIPGVGAARKRALLAHFGSAKAVARAGVPDLCAVEGISET 611 Query: 599 IACKIYNHFHKN 610 +A I++ FH + Sbjct: 612 MAQSIHDFFHGS 623 >gi|254438748|ref|ZP_05052242.1| excinuclease ABC, C subunit [Octadecabacter antarcticus 307] gi|198254194|gb|EDY78508.1| excinuclease ABC, C subunit [Octadecabacter antarcticus 307] Length = 621 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 252/605 (41%), Positives = 382/605 (63%), Gaps = 14/605 (2%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+MLD RVLYVGKA +L+ R+ +Y + H+ RI MIS ++ F T TE E Sbjct: 25 SPGVYRMLDSQARVLYVGKARSLKNRVSNYARPSGHSARIATMISHTASMMFLTTNTETE 84 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE N+IK+LKP++N+LLRDDKSFP ILI+ H+ P + KHR + +G+Y+GPFAS Sbjct: 85 ALLLEQNLIKQLKPKYNVLLRDDKSFPNILISGDHEFPRIEKHRGAKRKKGNYYGPFASA 144 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 AV +T+N+LQR F LR+C+DS + RTRPCL +QIKRCS PC G+++ Y + V +A+ Sbjct: 145 GAVNRTLNTLQRAFLLRNCSDSEYESRTRPCLQYQIKRCSAPCVGKVAQGDYKQLVKDAE 204 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNRMDCF 245 +FL+G + ++ +A M QA+ ++E A RDR+ AL+ +Q D Sbjct: 205 RFLTGKSTEMQASLAARMQQASNDMEFERAAALRDRIKALTQVQTSQGINPRGVTEADVI 264 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILL 305 +LY + AC+Q F QN G ++ + + ++++ F+ QFY+D+ P +LL Sbjct: 265 ALYRDGGQACVQVFFIRANQNWGNRDYYPRVSGDEDASEVMQAFVGQFYSDREPPRMLLL 324 Query: 306 SEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365 S ++ L+ + ++ G KV+I VP++GEK +++ A NA S +K+S + + Sbjct: 325 SHGLDDDDLMTEALSEKAGRKVEIIVPQRGEKAELVSGAARNARESLGRKMSETATQGRL 384 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 L+ + F LP +P+R+E+YDNSHI G AVG M+V G GF KNQYRKFN+ +D+ Sbjct: 385 LRGLKEAFDLPEVPQRVEVYDNSHIQGAFAVGAMIVAGPEGFDKNQYRKFNIQGDDLTPG 444 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD MM+ VL RRF +L+K + + +WP ++++DGG GQ+SA + ++++ Sbjct: 445 DDFGMMKEVLMRRFKRLLKED---------PKRELGTWPGLLLIDGGAGQVSAVRAIMEE 495 Query: 486 LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545 L V + ++ +AKG R G E+F+ + + L DP+LYF+QR+RDEAHRFAI TH Sbjct: 496 LGV-GDVPMVGVAKGVDRDHGKEEFYRTGKQVMALQRNDPVLYFVQRMRDEAHRFAIGTH 554 Query: 546 RKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 R +R KA +PLD++ G+G RKR LLQ FG+ K + R++ L +++GIS +A IY Sbjct: 555 RAKRSKAIGATPLDDVPGVGATRKRALLQHFGSAKAVGRAALADLKAVDGISGNMAETIY 614 Query: 605 NHFHK 609 +F++ Sbjct: 615 GYFNE 619 >gi|332559548|ref|ZP_08413870.1| excinuclease ABC subunit C [Rhodobacter sphaeroides WS8N] gi|332277260|gb|EGJ22575.1| excinuclease ABC subunit C [Rhodobacter sphaeroides WS8N] Length = 618 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 266/612 (43%), Positives = 373/612 (60%), Gaps = 14/612 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+MLD +VLYVGKA NL+ R+ +Y + H+ RI MI + ++ F Sbjct: 17 LKTLDGSPGVYRMLDAQSQVLYVGKARNLRARVSNYARPSGHSGRIARMIRETASMMFLT 76 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N+IK+LKPR+N+LLRDDKSFP ILI H P L KHR + +GSYF Sbjct: 77 TRTETEALLLEQNLIKQLKPRYNVLLRDDKSFPNILIAKDHPFPMLKKHRGKKSEKGSYF 136 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPFAS AV +T+N LQR F LR+C+D+ F RTRPCLLFQIKRCS PC G + + Y E Sbjct: 137 GPFASAGAVNRTLNQLQRVFLLRTCSDATFDSRTRPCLLFQIKRCSAPCVGRVPAADYAE 196 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240 + +A++FL G ++ +A M A+ ++E A RDR+ AL+ +Q+ Sbjct: 197 LIGDAERFLQGRTTKVQANLAEQMQAASEAMEFERAAALRDRIKALTQVQSSQGINPRGV 256 Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 D +++ AC+Q F Q+ G FF +T + + +IL FL QFY DK Sbjct: 257 AEADVIAVHLEGGQACVQVFFIRANQSWGNRDFFPRTGAGAEEPEILEAFLAQFYDDKEP 316 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P ILLS + L+ ++ G KV + VP++GEK +++E A NA S ++++ Sbjct: 317 PRMILLSHPVDNPDLVGQLLSERAGRKVTLGVPQRGEKAELVENAARNARESLARRMAES 376 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + +L + F L PKRIE+YDNSHI G +AVG M+V G GF+K+QYRKFN+ Sbjct: 377 ATQNRLLAGLAEAFELDAAPKRIEVYDNSHIQGTNAVGGMIVAGPEGFLKSQYRKFNIRG 436 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 DD MM+ VL RRF +L+K + E +WPD++++DGG GQ+SA Sbjct: 437 AAGAQGDDFGMMKEVLTRRFERLLKED---------PERKTDAWPDLLLIDGGAGQVSAV 487 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 Q +L++L V++ + I +AKG R AG E+F L M DP+LYF+QRLRDEAHR Sbjct: 488 QEILQELGVDD-VPFIGVAKGIDRDAGKEEFHRPGEPPFALRMNDPVLYFVQRLRDEAHR 546 Query: 540 FAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 +AI HR +R KA +PLDEI G+G RKR LL FG+ K ++R+ L ++EGIS+ Sbjct: 547 WAIGAHRAKRAKAVSATPLDEIPGVGAARKRALLAHFGSAKAVARAGVPDLCAVEGISET 606 Query: 599 IACKIYNHFHKN 610 +A I+++FH + Sbjct: 607 MAQSIHDYFHGS 618 >gi|255262958|ref|ZP_05342300.1| excinuclease ABC, C subunit [Thalassiobium sp. R2A62] gi|255105293|gb|EET47967.1| excinuclease ABC, C subunit [Thalassiobium sp. R2A62] Length = 630 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 254/611 (41%), Positives = 381/611 (62%), Gaps = 14/611 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+MLD RVLYVGKA NL+ R+ +Y + H+ RI MI + F Sbjct: 28 LKTLDSSPGVYRMLDEQARVLYVGKARNLKARVSNYARPSGHSARIDRMIRNTAAMMFLT 87 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N+IK+LKP+FN+LLRDDKSFP IL+T H P + KHR + +GSY+ Sbjct: 88 TKTETEALLLEQNLIKQLKPKFNVLLRDDKSFPNILVTKDHAFPQIKKHRGAKKQKGSYY 147 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPFAS AV +++N LQ+ F LR+C D+ F RTRPCLL+QIKRC+GPC G I + Y + Sbjct: 148 GPFASAGAVNRSLNQLQKVFLLRTCTDATFESRTRPCLLYQIKRCAGPCVGLIEPDDYAK 207 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240 V +A +FLSG + +++ ++A++M +A+ ++E A RDR+ A++ +Q Sbjct: 208 LVDDASRFLSGKSTSVQGQLAKDMAEASENMEFERAAALRDRIRAMTQMQTQQGINPQGV 267 Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 D +L+ AC+Q F QN G ++ + + A+++ F+ QFY+D+ Sbjct: 268 AEADIIALHMQNGQACVQVFFIRANQNWGNRDYYPRVGDDVDAAEVMQAFVLQFYSDREP 327 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P+ +L+S ++ L+ + ++ G KV + VP++GEK ++ A+ NA S +K+S Sbjct: 328 PKAVLMSHGLDDEDLVIDALSQKAGRKVDVAVPQRGEKADLVGGAMRNARESLARKMSET 387 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + +LK F L PKRIE+YDNSHI G AVG M+V G +GF KNQYRKFN+ Sbjct: 388 ATQTKLLKGVADAFDLAEPPKRIEVYDNSHIQGAHAVGAMIVAGPDGFEKNQYRKFNIRG 447 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 +++ DD MM+ VL RRF +L+K + + WPD++++DGG GQ+SA Sbjct: 448 DELTPGDDFGMMKEVLMRRFKRLLKED---------PDKEKSMWPDLLLIDGGAGQVSAV 498 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 + ++ ++ V++ + ++ +AKG R AG E+F + + L DP+LYFIQR+RDEAHR Sbjct: 499 RQIMTEMGVDD-LAMVGVAKGEDRDAGKEEFHRTGKQVMALRHNDPVLYFIQRMRDEAHR 557 Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAI THR +R KA +PLD++ G+G RKR LL FG+ K + R++ L +++GIS Sbjct: 558 FAIGTHRAKRSKAIGATPLDDVPGVGATRKRALLAHFGSAKAVGRANLADLKAVDGISSA 617 Query: 599 IACKIYNHFHK 609 +A IY++FH+ Sbjct: 618 MAETIYDYFHE 628 >gi|209886325|ref|YP_002290182.1| excinuclease ABC, C subunit [Oligotropha carboxidovorans OM5] gi|209874521|gb|ACI94317.1| excinuclease ABC, C subunit [Oligotropha carboxidovorans OM5] Length = 694 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 292/612 (47%), Positives = 394/612 (64%), Gaps = 8/612 (1%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + + P PGVY+ML+ G VLYVGKA N++KR+ SY N H+ RI MI+ + Sbjct: 84 AVKLAPTSPGVYRMLNEGGDVLYVGKAKNVKKRLTSYTRVNGHSARIARMIAATITVEII 143 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T TE EALLLEAN+IK+L+PRFN+LLRDDKSFPYILIT H P L KHR + T G Y Sbjct: 144 STETETEALLLEANLIKQLRPRFNVLLRDDKSFPYILITSDHWAPQLVKHRGAQTRPGRY 203 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPFASV AV +T+ +LQR F +RSC DS F RTRPCLLFQIKRC+GPCTGEI Y Sbjct: 204 FGPFASVGAVNRTLTALQRAFLIRSCTDSFFEGRTRPCLLFQIKRCAGPCTGEIDFPAYR 263 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 V EA FLSG + +K+++A M +A+ ++E A ++RDRLAALS IQ Sbjct: 264 NLVREATDFLSGRSRAVKQELADEMEKASAALEFERAALYRDRLAALSAIQAQQGINPRT 323 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F+++ +C++ FF GQN G +F + D ++L+ FL QFY K Sbjct: 324 VEEADVFAIHQEGGYSCVEVFFFRTGQNWGNRAYFPRADKSIAADEVLASFLSQFYDGKQ 383 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P+ +LLS + EE +LL + + G+KV++ P++GEKR++++ AL NA + +KL+ Sbjct: 384 PPKLVLLSHKIEEEALLASALTVKAGHKVEVATPQRGEKRELVQHALTNAREALGRKLAD 443 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + +L + LP P+RIE+YDNSHI G +AVG MVV G GFVKNQYRKFN+ Sbjct: 444 AATQTRLLDGLVRALQLPRAPRRIEVYDNSHIQGTNAVGAMVVAGPEGFVKNQYRKFNIR 503 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 ++ DD AMMR VL+RRF +L+ ++E ++ + P WPD+VI+DGG GQL+A Sbjct: 504 SENLTPGDDYAMMREVLQRRFKRLLTSDE---ATARQGDDDVPQWPDLVIIDGGLGQLNA 560 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 G+ ++L V ++++S+AKGP R AG E F+ A+ L RDP+LYFIQRLRDEAH Sbjct: 561 VCGIFEELGVTG-VSLMSVAKGPDRDAGRETLFLPDRPAIKLEPRDPVLYFIQRLRDEAH 619 Query: 539 RFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RF I +HR R+K L EI GIGP RKR LL+ FGT+K I R+S L + G+S Sbjct: 620 RFVIGSHRNLRRKDIREAGLQEIPGIGPARKRALLRHFGTLKEIERASLADLGKVPGVSA 679 Query: 598 KIACKIYNHFHK 609 + A +I++ FH Sbjct: 680 ESARRIFDFFHP 691 >gi|316932715|ref|YP_004107697.1| excinuclease ABC subunit C [Rhodopseudomonas palustris DX-1] gi|315600429|gb|ADU42964.1| excinuclease ABC, C subunit [Rhodopseudomonas palustris DX-1] Length = 699 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 287/609 (47%), Positives = 387/609 (63%), Gaps = 7/609 (1%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 P PGVY+ML+ VLYVGKA N++KR+ SY RI MI+ + T TE Sbjct: 87 PTSPGVYRMLNEGRDVLYVGKAKNVKKRLASYARPTGQVLRIARMIALTVEVEVISTTTE 146 Query: 67 VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126 EALLLEAN+IK+L+PRFN+ LRDDKSFPYILIT H P + KHR + + G YFGPFA Sbjct: 147 TEALLLEANLIKQLRPRFNVQLRDDKSFPYILITGDHWAPQILKHRGAQSRPGRYFGPFA 206 Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186 S AV +TI +LQR F +RSC DS F RTRPCLL+QI+RC+GPCTGE+ Y E V E Sbjct: 207 SAGAVNRTITALQRAFLVRSCTDSFFESRTRPCLLYQIRRCAGPCTGEVDFPGYSELVRE 266 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMD 243 A FLSG + +K+ +A M +A+ + ++E+A ++RDRLAALS IQ+ D Sbjct: 267 ATDFLSGRSRAVKQLLAAEMEKASGELEFETAALYRDRLAALSAIQSQQGINPRTVEEAD 326 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303 F+++ + +C++ FF GQN G +F + + T A++L F+ QFY DKP P+ I Sbjct: 327 VFAIHQDGGYSCVEVFFFRTGQNWGNRAYFPRAEKTFTPAEVLGAFVAQFYDDKPPPKLI 386 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 LLS E +E LL + + G+KV+I VPK+GEK++++ A NA + +KL+ + Sbjct: 387 LLSHEIDEAELLADALCVKAGHKVEIMVPKRGEKKELVTHAQTNAREALGRKLADTATQA 446 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 +L LP P+RIE+YDNSHI G +AVG M+V G GF+KNQYRKFN+ + Sbjct: 447 RLLDSLATTLGLPKAPQRIEVYDNSHIQGTNAVGAMIVAGPEGFIKNQYRKFNIRSEGLT 506 Query: 424 TQDDCAMMRMVLERRFSQLIK---NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 DD AMMR VL+RRF +L + + K ++ P WPD+VI+DGG+GQL+AA+ Sbjct: 507 PGDDYAMMREVLQRRFKRLAALQTDGGDAEPADKSKDDEVPQWPDLVIIDGGRGQLNAAR 566 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 L + + +++T++ +AKGP R AG E F+ +A+ L RDP+LYFIQRLRDEAHRF Sbjct: 567 EALSGIGLTDQVTLLGVAKGPDRDAGRETLFMPDRDAIKLEPRDPVLYFIQRLRDEAHRF 626 Query: 541 AITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 I +HR RKK L EI GIGP RKR LL FGT+K I R+S L + GIS + Sbjct: 627 VIGSHRTLRKKDIREAGLQEIPGIGPTRKRALLLHFGTLKEIERASIADLGKVPGISAES 686 Query: 600 ACKIYNHFH 608 A +I+ FH Sbjct: 687 ARRIFEFFH 695 >gi|288941271|ref|YP_003443511.1| excinuclease ABC subunit C [Allochromatium vinosum DSM 180] gi|288896643|gb|ADC62479.1| excinuclease ABC, C subunit [Allochromatium vinosum DSM 180] Length = 610 Score = 570 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 219/612 (35%), Positives = 347/612 (56%), Gaps = 22/612 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+MLD G VLYVGKA NL++R+ SY T R ++S I +I TVT Sbjct: 17 DLPTGPGVYRMLDAGGTVLYVGKAKNLKRRVSSYF-GRTLTPRHARLVSLIADIDVTVTR 75 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLE+ +IK L+PRFN+LLRDDKS+PYI +T + P L +R G FGP Sbjct: 76 TEGEALLLESQLIKSLQPRFNVLLRDDKSYPYIQLTTQDDYPRLTFYRGPRQTDGRLFGP 135 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + S AV +T+ LQ+ F +R C D FRHR+RPCL +QIKRCS PC G ++ E+Y E V Sbjct: 136 YPSAWAVRETLQILQKLFPVRQCEDGFFRHRSRPCLQYQIKRCSAPCVGLVTPEQYAEDV 195 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYNRM 242 KFL G + +++ M A+ ++E A +RDR+ AL + + Sbjct: 196 ARTAKFLDGRAGEVIDELIGAMETASAALEFERAAQYRDRIQALRRVLERQSVIGEDGDL 255 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D + ++ C+Q G++ G FF K +++ + +L+ FL QFY P+ Sbjct: 256 DLIACAREADVWCVQVFVVRRGRHLGNTAFFPKAPADTEESALLAGFLAQFYAMHEVPDT 315 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 ++LS +E +L + ++ G V++ V +GE+ + ++ A NA + Q+L ++ + Sbjct: 316 LILSTRPDEAEILHAALAERAGRTVRLQVDVRGERARWLDMARDNARFALQQRLGSQAGY 375 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 L+ + L P+R+E +D SH G V VV G K+ YR+FN+ + Sbjct: 376 ARRLESLREALELADRPERMECFDISHTQGEHTVASCVVFDGEGARKSDYRRFNI--TGI 433 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD A + L RR++++ + E PD++++DGG+GQL+A Sbjct: 434 TPGDDYAALDQALTRRYTRVGQGE--------------YPIPDLILIDGGRGQLAAVDEA 479 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFA 541 L++L + + ++ ++KGP R G E+ ++ E ++L P ++ IQ++RDEAHRFA Sbjct: 480 LQELGLHG-LNLVGVSKGPDRRPGAERLWLLGREVPVILPSDSPAMHLIQQIRDEAHRFA 538 Query: 542 ITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 IT HR+RR KA S L++I G+GP R++ LL+ FG ++ + R+ + +A +EGIS+ +A Sbjct: 539 ITGHRQRRAKARATSALEDIPGLGPKRRQRLLKHFGGLRGLERAGIDDIAGVEGISRPLA 598 Query: 601 CKIYNHFHKNTS 612 +I+ FH++ + Sbjct: 599 QRIHAAFHRDQA 610 >gi|23016722|ref|ZP_00056475.1| COG0322: Nuclease subunit of the excinuclease complex [Magnetospirillum magnetotacticum MS-1] Length = 624 Score = 570 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 274/610 (44%), Positives = 381/610 (62%), Gaps = 14/610 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY+ML+ G VLYVGKA +L+KR+ +Y RI MI++ ++ T Sbjct: 24 TLTGAPGVYRMLNGKGDVLYVGKAKSLKKRVVAYTKPERMPLRIQRMIAETASMEVVTTR 83 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TEVEALLLE+N+IK L PR+NILL+DDKSFP+ILITD H P + KHR + +G YFGP Sbjct: 84 TEVEALLLESNLIKSLGPRYNILLKDDKSFPHILITDDHDWPQVLKHRGARNRKGEYFGP 143 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 FAS AV +T+ +LQR F LRSC+DSVF RTRPCLLFQIKRCS PC I + Y+ V Sbjct: 144 FASAGAVNQTLAALQRAFLLRSCSDSVFASRTRPCLLFQIKRCSAPCVERIGRDAYLGLV 203 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241 EA+ FLSG + ++ + M A +YE+A + RDR+ AL+ IQ H D Sbjct: 204 EEARAFLSGQSRRIQHDLTARMESAAEDMEYEAAAVFRDRIRALTRIQAHQDINPAEVEE 263 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D +L+ + CIQ FF G N G+ +F +I++ FL QFY DK P Sbjct: 264 ADVVALHQAGDGVCIQVFFFRSGCNYGSRAYFPIHAQGEEAPEIMAAFLGQFYADKMPPR 323 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 ILLS E E ++ + ++ G KV ++VPK+G++ +++E A NA + ++++ + Sbjct: 324 EILLSLEPAEADIVAQALSEKAGRKVTLSVPKRGDRTRLVEHAQDNARDALGRRMAESGA 383 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 + +L + F + P+RIE+YDNSHI G AVG M+V G +G +K+ YRKFN+ D Sbjct: 384 QRKLLDGVAELFGMETPPERIEVYDNSHIQGSDAVGAMIVAGPDGLMKSAYRKFNIRSTD 443 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 + DD AMMR VL RRF++ K + + WPD+ ++DGGKGQL+AA G Sbjct: 444 LTPGDDFAMMREVLTRRFARAQKED---------PDRDRGLWPDLALIDGGKGQLNAALG 494 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 VL++L +++ + ++ IAKGP R+AG E+FF+ E + L MR P+LYF+QRLRDEAHRFA Sbjct: 495 VLEELGIDD-VLLVGIAKGPDRNAGKERFFLAGKEPISLEMRHPVLYFLQRLRDEAHRFA 553 Query: 542 ITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 I THR RR K S LD + GIGP RK+ LL FG+ K ++ + L S+EGIS +A Sbjct: 554 IGTHRARRSKGLVQSTLDALPGIGPKRKKALLHHFGSAKAVAEAGLPDLESVEGISHAMA 613 Query: 601 CKIYNHFHKN 610 KI+++FH Sbjct: 614 KKIHDYFHPE 623 >gi|83941423|ref|ZP_00953885.1| excinuclease ABC subunit C [Sulfitobacter sp. EE-36] gi|83847243|gb|EAP85118.1| excinuclease ABC subunit C [Sulfitobacter sp. EE-36] Length = 621 Score = 570 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 263/611 (43%), Positives = 382/611 (62%), Gaps = 14/611 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+MLD RVLYVGKA NL+ R+ +Y H+ RI MIS ++ F Sbjct: 19 LKTIDGSPGVYRMLDSESRVLYVGKARNLRARVSNYARPTGHSGRIARMISNTASMMFLT 78 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N+IK+LKP+FN+LLRDDKSFP IL+T H P + KHR + +G+Y+ Sbjct: 79 TKTETEALLLEQNLIKQLKPKFNVLLRDDKSFPNILVTATHDYPQIKKHRGAKKEKGNYY 138 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPFAS AV +T+N LQR F LR C+D++F R+RPCL QIKRCS PC G+IS E+Y + Sbjct: 139 GPFASAGAVNRTLNQLQRVFLLRDCSDAMFESRSRPCLQHQIKRCSAPCVGKISPEEYRK 198 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240 V +A+KFL+G + +++ ++A M +A+ ++E A RDR+ AL+ +Q Sbjct: 199 TVQDAEKFLNGKSTDIQGRLATEMAEASEAMEFERAAALRDRIKALTQVQTAQGINPQGV 258 Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 D +L+ ++ AC+Q F QN G ++ + + A++L F+ QFY + Sbjct: 259 AEADIIALHLDQGQACVQVFFIRANQNWGNRDYYPRVGPDVDAAEVLEAFIGQFYDTREP 318 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P ++LS + E L+ + + G KV I VPK+GEK ++++ AL NA S +KL+ Sbjct: 319 PRQLILSNDIESPDLMVEALSGKLGRKVDIVVPKRGEKAELVDGALRNARESLARKLAET 378 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + +LK F LP P+RIE+YDNSHI G +AVG M+V G +G +KNQYRKFN+ Sbjct: 379 ATQTNLLKGIADAFDLPAPPQRIEVYDNSHIQGTNAVGGMIVAGPDGMMKNQYRKFNIRG 438 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 +D+ DD MM+ VL RRF +L+K + + WPD++++DGG GQ+SA Sbjct: 439 DDLTPGDDFGMMKEVLTRRFKRLLKED---------PDRKLGMWPDLLLIDGGAGQVSAV 489 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 ++++ VE+ I ++ +AKG R AG E+F+ + L DP+LYFIQRLRDEAHR Sbjct: 490 ASIMREYGVED-IPMVGVAKGVDRDAGKEEFYRVGKRPMALRHNDPVLYFIQRLRDEAHR 548 Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAI THR +R KA +PLD++ G+G RKR LL FG+ K + R++ L +++G+S Sbjct: 549 FAIGTHRAKRAKAVGATPLDDVPGVGAARKRALLAHFGSAKAVGRANLSDLKAVDGVSVA 608 Query: 599 IACKIYNHFHK 609 +A +IY FH+ Sbjct: 609 LAERIYAFFHE 619 >gi|83854900|ref|ZP_00948430.1| excinuclease ABC subunit C [Sulfitobacter sp. NAS-14.1] gi|83842743|gb|EAP81910.1| excinuclease ABC subunit C [Sulfitobacter sp. NAS-14.1] Length = 621 Score = 570 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 263/611 (43%), Positives = 383/611 (62%), Gaps = 14/611 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+MLD RVLYVGKA NL+ R+ +Y + H+ RI MIS ++ F Sbjct: 19 LKTIDGSPGVYRMLDSESRVLYVGKARNLRARVSNYARPSGHSGRIARMISNTASMMFLT 78 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N+IK+LKP+FN+LLRDDKSFP IL+T H P + KHR + +G+Y+ Sbjct: 79 TKTETEALLLEQNLIKQLKPKFNVLLRDDKSFPNILVTATHDYPQIKKHRGAKKEKGNYY 138 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPFAS AV +T+N LQR F LR C+D++F R+RPCL QIKRCS PC G+IS E+Y + Sbjct: 139 GPFASAGAVNRTLNQLQRVFLLRDCSDAMFESRSRPCLQHQIKRCSAPCVGKISPEEYRK 198 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240 V +A+KFL+G + +++ ++A M +A+ ++E A RDR+ AL+ +Q Sbjct: 199 TVQDAEKFLNGKSTDIQGRLATEMAEASEAMEFERAAALRDRIKALTQVQTAQGINPQGV 258 Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 D +L+ ++ AC+Q F QN G ++ + + A++L F+ QFY + Sbjct: 259 AEADIIALHLDQGQACVQVFFIRANQNWGNRDYYPRVGPDVDAAEVLEAFIGQFYDTREP 318 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P ++LS + E L+ + + G KV I VPK+GEK ++++ AL NA S +KL+ Sbjct: 319 PRQLILSNDIESPDLMVEALSGKLGRKVDIVVPKRGEKAELVDGALRNARESLARKLAET 378 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + +LK F LP P+RIE+YDNSHI G +AVG M+V G +G +KNQYRKFN+ Sbjct: 379 ATQTNLLKGIADAFDLPAPPQRIEVYDNSHIQGTNAVGGMIVAGPDGMMKNQYRKFNIRG 438 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 +D+ DD MM+ VL RRF +L+K + + WPD++++DGG GQ+SA Sbjct: 439 DDLTPGDDFGMMKEVLTRRFKRLLKED---------PDRKLGMWPDLLLIDGGAGQVSAV 489 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 ++++ VE+ I ++ +AKG R AG E+F+ + L DP+LYFIQRLRDEAHR Sbjct: 490 ASIMREYGVED-IPMVGVAKGVDRDAGKEEFYRVGERPMALRHNDPVLYFIQRLRDEAHR 548 Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAI THR +R KA +PLD++ G+G RKR LL FG+ K + R++ L +++G+S Sbjct: 549 FAIGTHRAKRAKAVGATPLDDVPGVGAARKRALLAHFGSAKAVGRANLSDLKAVDGVSVA 608 Query: 599 IACKIYNHFHK 609 +A +IY FH+ Sbjct: 609 LAERIYAFFHE 619 >gi|163745640|ref|ZP_02153000.1| excinuclease ABC subunit C [Oceanibulbus indolifex HEL-45] gi|161382458|gb|EDQ06867.1| excinuclease ABC subunit C [Oceanibulbus indolifex HEL-45] Length = 622 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 265/611 (43%), Positives = 383/611 (62%), Gaps = 14/611 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+MLD RVLYVGKA NL+ R+ SY H+ RI+ MI+ ++ F Sbjct: 20 LKSLDSSPGVYRMLDSESRVLYVGKARNLRARVSSYARPTGHSGRISRMIANTASMMFLT 79 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N+IK+LKP+FN+LLRDDKSFP IL+T H P + KHR + +GSY+ Sbjct: 80 TKTETEALLLEQNLIKQLKPKFNVLLRDDKSFPNILVTADHDYPQIKKHRGAKKEKGSYY 139 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPFAS AV +T+N LQR F LR C++S+F RTRPCL QIKRCS PC G+IS+E Y + Sbjct: 140 GPFASAGAVNRTLNQLQRVFLLRDCSNSMFDSRTRPCLQHQIKRCSAPCVGKISAEDYRQ 199 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---Y 239 V +A++FLSG + ++ ++AR+M +A+ ++E A RDR+ AL+ +Q Sbjct: 200 TVRDAERFLSGKSTEIQGRLARDMAEASEAMEFERAAALRDRIKALTQVQTAQGINPQGV 259 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 N D +L+ AC+Q F QN G ++ + ++ A++L F+ QFY + Sbjct: 260 NEADIIALHMEGGQACVQVFFIRANQNWGNRDYYPRVGADVDAAEVLEAFIGQFYDTREP 319 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P ++LS E E L+ + + G KV++ VP++GEK ++++ AL NA S +K++ Sbjct: 320 PRQLILSNEIENPDLMAEALSGKIGRKVELLVPQRGEKAELVDGALRNARESLARKMAET 379 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + +L+ + F LP P+RIE+YDNSHI G +AVG M+V G G +KNQYRKFN+ Sbjct: 380 ATQTKLLQGLVEAFDLPRSPERIEVYDNSHIQGTNAVGAMIVAGPEGMMKNQYRKFNIRG 439 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 +D+ DD MM+ VL RRF +LIK + + S WPD++++DGG GQ+SA Sbjct: 440 DDLTPGDDFGMMKEVLHRRFKRLIKED---------PDRSRGLWPDLLLIDGGAGQVSAV 490 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 ++ + VE+ I ++ +AKG R AG E+F + L DP+LYF+QRLRDEAHR Sbjct: 491 ASIMAQHGVED-IPMVGVAKGIDRDAGKEEFHRVGKRVMALRHNDPVLYFVQRLRDEAHR 549 Query: 540 FAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAI THR +R K +PLD++ G+G RKR LL FG+ K + R++ L ++EG+S Sbjct: 550 FAIGTHRAKRAKGISATPLDDVPGVGAARKRALLAHFGSAKAVGRANLSDLKAVEGVSDA 609 Query: 599 IACKIYNHFHK 609 +A IY +FH+ Sbjct: 610 LAETIYGYFHE 620 >gi|254509746|ref|ZP_05121813.1| excinuclease ABC, C subunit [Rhodobacteraceae bacterium KLH11] gi|221533457|gb|EEE36445.1| excinuclease ABC, C subunit [Rhodobacteraceae bacterium KLH11] Length = 624 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 267/610 (43%), Positives = 379/610 (62%), Gaps = 15/610 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ + PGVY+MLD RVLYVGKA NL+ R+ +Y H+ RI MI+ ++ F Sbjct: 23 AKTLDNSPGVYRMLDADSRVLYVGKARNLKARVSNYTRP-GHSGRIEKMIAATASMMFLT 81 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N+IK+LKP++N+LLRDDKSFP IL+ H P + KHR + +G+YF Sbjct: 82 TRTETEALLLEQNLIKQLKPKYNVLLRDDKSFPNILVAKDHAFPQIKKHRGAKKEKGAYF 141 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPFAS AV +T+N LQ+ F LR+C+DS+F RTRPCLL+QIKRCSGPC G I ++Y E Sbjct: 142 GPFASAGAVNRTLNQLQKAFLLRNCSDSMFESRTRPCLLYQIKRCSGPCVGLIPEDEYRE 201 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---Y 239 V +A++FLSG + ++E +A M A+ ++E A RDR+ AL+ +Q Sbjct: 202 SVKDAERFLSGRSTKVQEDLATQMMAASEAMEFERAAGLRDRIRALTQVQTSQGINPRGV 261 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 D LY + AC+Q F QN G F+ + + + A+ + FL QFY +K Sbjct: 262 TEADVIGLYMDSGQACVQVFFIRANQNWGNRDFYPRVGPDVSPAEAMEAFLGQFYDNKEP 321 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P ++LS+ E L++ + ++ G KV+I VP++GEK+++I AL NA S +++S Sbjct: 322 PRQLILSDAIENADLMQAALSEKAGRKVEILVPQRGEKQELIAGALRNARESLARRMSES 381 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + +L+ + F L P RIE+YDNSHI G +AVG M+V G G++KN YRKFN+ Sbjct: 382 ATQAKLLRGVAEAFDLDTPPGRIEVYDNSHIQGTNAVGGMIVAGPEGYMKNAYRKFNIRG 441 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 +D+ DD MM+ VL RRF++L K + + WPD++++DGG GQ+SA Sbjct: 442 DDLTPGDDFGMMKEVLTRRFTRLQKED---------PDREKGLWPDLLLIDGGAGQVSAV 492 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 ++ + VE+ I ++ +AKG R G E+F L DP+LYFIQRLRDEAHR Sbjct: 493 HEIMAQYGVED-IPMVGVAKGVDRDHGKEEFHRIGQRPFALKRNDPVLYFIQRLRDEAHR 551 Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAI THR +R KA +PLDEI G+G RKR LL FG+ K +SR++ L ++EGIS Sbjct: 552 FAIGTHRAKRAKAVGATPLDEIPGVGAARKRALLTHFGSAKAVSRANLADLKAVEGISAG 611 Query: 599 IACKIYNHFH 608 +A K+Y+ FH Sbjct: 612 LAQKVYDFFH 621 >gi|163868037|ref|YP_001609241.1| excinuclease ABC subunit C [Bartonella tribocorum CIP 105476] gi|161017688|emb|CAK01246.1| excinuclease ABC subunit C [Bartonella tribocorum CIP 105476] Length = 661 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 305/612 (49%), Positives = 410/612 (66%), Gaps = 7/612 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+M+ G +LYVGKA NL+KR+ +Y H +RIT MI ++ F VT Sbjct: 49 HLPHKPGVYRMIGENGDILYVGKARNLKKRVSNYAREQGHNNRITRMIRATYHMEFIVTH 108 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLEAN+IKRL P FN+LLRDDKSFPYI+IT+ H+ PALYKHR + T + YFGP Sbjct: 109 TETEALLLEANLIKRLHPHFNVLLRDDKSFPYIMITNDHRAPALYKHRGARTQKAHYFGP 168 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 FAS AV +TI+ LQR F LR+C D++F +RTRPCLL QIKRCS PCT EI+ Y E V Sbjct: 169 FASASAVTQTIHVLQRAFLLRTCTDTIFENRTRPCLLHQIKRCSAPCTHEINDIDYKELV 228 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241 EAK FLSG + ++K + + M++A D+E A +RDRL+ALSHIQ+H Sbjct: 229 REAKAFLSGKDQSVKNDMVQAMHKAAENLDFEQAASYRDRLSALSHIQSHQGINPQTIKE 288 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D F++ + + CIQ FF GQN G +F K D + +IL+ FL QFY DKP P+ Sbjct: 289 ADVFAIAQKEGMTCIQVFFFRMGQNWGNRAYFPKADPSFSRTEILASFLTQFYDDKPLPK 348 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 +ILLSEE EE +LL + + +K+ +++PKQGE++ ++ A +NA + KL+ + Sbjct: 349 SILLSEEIEEKTLLTEALSLKANHKISLSLPKQGERKTLVNHAYLNAQEALEHKLAETAT 408 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 H +L+ + F LP P+RIE+YDNSHIMG ++VG M+V G+ GFVKNQYRKFN+ D Sbjct: 409 HTKLLQGLAETFQLPFPPRRIEVYDNSHIMGTNSVGAMIVAGQMGFVKNQYRKFNIRSTD 468 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFH---PKKQEYSFPSWPDVVILDGGKGQLSA 478 + DD MM+ V++RRFS+LIK + N + ++ FP WPD++++DGG+GQ+++ Sbjct: 469 ITPGDDFGMMKEVIKRRFSRLIKEHDLPNKNHDIHNQENDLFPIWPDLILIDGGEGQINS 528 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 +L +L + N IT++ IAKG R AG E+FF+K RDPILYF+QRLRDEAH Sbjct: 529 VHTILTELQLNNLITVVGIAKGVDRHAGRERFFIKGTPPFTFPPRDPILYFLQRLRDEAH 588 Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 FAI THR +RKKA +PLDEI IGP RKR LL FG+ K ++ +S E L + GIS Sbjct: 589 HFAIGTHRIKRKKATFKNPLDEIENIGPTRKRALLHHFGSAKAVADASLEDLKKVTGISA 648 Query: 598 KIACKIYNHFHK 609 IA KI+NHFH+ Sbjct: 649 AIAQKIHNHFHE 660 >gi|114320518|ref|YP_742201.1| excinuclease ABC subunit C [Alkalilimnicola ehrlichii MLHE-1] gi|119367622|sp|Q0A8X6|UVRC_ALHEH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|114226912|gb|ABI56711.1| Excinuclease ABC subunit C [Alkalilimnicola ehrlichii MLHE-1] Length = 611 Score = 568 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 232/613 (37%), Positives = 362/613 (59%), Gaps = 22/613 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + + PGVY+M+D G VLYVGKA NL+KR+ SY + + RI M++Q+ +I+ TVT Sbjct: 16 SLTQRPGVYRMVDGRGEVLYVGKARNLKKRVASYFTRSRKSARIELMLTQVQDIQVTVTH 75 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EAL+LE +IK L+PR+N+LLRDDKS+P+I ++ P L HR + G +FGP Sbjct: 76 TEAEALILENTLIKELRPRYNVLLRDDKSYPWIYLSSHQDFPRLSFHRGARKGPGRWFGP 135 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV +T+N+LQ+ F +R C DS F +R+RPCL QIKRC+ PC G IS E Y E V Sbjct: 136 FPSGHAVRETLNTLQKVFRIRQCQDSFFSNRSRPCLQHQIKRCTAPCVGYISREAYQEDV 195 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYNRM 242 A FL G ++ + E++ M A+ + ++E+A +RDR+ AL +Q + Sbjct: 196 RHAVLFLEGRSNQVIEELGARMEAASERLEFEAAAQYRDRIQALQAVQERQYIVGEKGDL 255 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D + + AC+ FF G+N G F+ + + A++L+ FL ++Y + P Sbjct: 256 DVIACVSDGVTACVTVFFFRQGRNLGNKVFYPRIPEGADEAEVLAAFLARYYIGRKAPPE 315 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 +++S E +L + ++ G++V++T + E+R+ +E AL NA + T + ST+ Sbjct: 316 LVISHTIPEQKVLGEALSRESGHRVRVTHSVRKERRRWLEMALTNARHALTARTSTQAMA 375 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 L+ LP +P+RIE +D SH G + V VV ++G +K+ YR+FN+ + Sbjct: 376 LHRLEALQDALQLPALPERIECFDISHTRGEATVAACVVFNQDGPLKSDYRRFNIRG--I 433 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD A MR L RR+ +L K E PD++++DGGKGQ++ A+ V Sbjct: 434 TPGDDYAAMRQALSRRYQRLKKGE--------------GVLPDILLIDGGKGQVAQAEAV 479 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFV--KKGEALVLNMRDPILYFIQRLRDEAHRF 540 L++L V++ + ++ IAKGP+R G E + + G L P L +Q++RDEAHRF Sbjct: 480 LEELQVDD-VYLVGIAKGPERRPGEETLILSDEDGREKTLGPDAPALQLLQQVRDEAHRF 538 Query: 541 AITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI HR++R KA S L++I G+GP R++ LL+ FG +K ++R+ E LA GIS+ + Sbjct: 539 AIAGHRQQRGKARTRSALEDIPGLGPKRRQALLRHFGGLKAVARAGVEDLARTPGISRAL 598 Query: 600 ACKIYNHFHKNTS 612 A K+Y+H+H ++ Sbjct: 599 AQKVYDHYHGDSG 611 >gi|89070175|ref|ZP_01157503.1| excinuclease ABC subunit C [Oceanicola granulosus HTCC2516] gi|89044191|gb|EAR50342.1| excinuclease ABC subunit C [Oceanicola granulosus HTCC2516] Length = 617 Score = 568 bits (1464), Expect = e-159, Method: Composition-based stats. Identities = 267/612 (43%), Positives = 383/612 (62%), Gaps = 15/612 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFT 61 + + PGVY+MLD RVLYVGKA NL+ R+ +Y + H+ RI MI + ++ F Sbjct: 14 LKTLDSSPGVYRMLDDQSRVLYVGKARNLKARVSNYSRPSPQHSARIARMIRETASMMFL 73 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T TE EALLLE N+IK+LKP+FN+LLRDDKSFP IL++ +H P + KHR + +GSY Sbjct: 74 TTRTETEALLLEQNLIKQLKPKFNVLLRDDKSFPNILVSREHDFPQIKKHRGAKKEKGSY 133 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GPFAS AV +T+N LQ+ F LR+C+DS F RTRPCLL+QIKRCS PC G I Y Sbjct: 134 YGPFASAGAVNRTLNQLQKVFLLRNCSDSTFETRTRPCLLYQIKRCSAPCVGYIDKAGYE 193 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 V +A++FLSG +++ ++A+ M +A+ ++E A RDR+ AL+ +Q+ Sbjct: 194 ALVGDAQRFLSGKTTSVQNQLAQQMQEASEAMEFERAAALRDRIRALTQVQSSQGINPQT 253 Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 + D +L+ + AC+Q F QN G ++ + E A+I+ F+ QFY ++ Sbjct: 254 TSEADVIALHVDGGQACVQVFFIRSNQNWGNHDYYPRISGEEDPAEIIEAFVGQFYANRE 313 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P +LLS +E L+ + +Q G KV+I+VP++GEK +++ AL NA S +K+S Sbjct: 314 PPRLLLLSHGLDEPDLMAQALCEQRGGKVEISVPQRGEKAELVGSALRNARESLGRKMSE 373 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + +LK F LP +P+RIE+YDNSHI G AVG M+V G G KNQYRKFN+ Sbjct: 374 TATQGRLLKGLADAFELPAVPQRIEVYDNSHIQGAYAVGAMIVAGPEGLEKNQYRKFNIR 433 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 +++ DD MM+ VL RRF +L+K + + +WPD++++DGG GQ+SA Sbjct: 434 GDELTPGDDFGMMKEVLTRRFKRLLKED---------PDRQSGTWPDLLLIDGGAGQVSA 484 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 ++ +L VE+ I +I +AKG R G E+F L DP+LYF+QRLRDEAH Sbjct: 485 VHAIMAELGVED-IPMIGVAKGVDRDLGKEEFHRTGRTVKALRHNDPVLYFVQRLRDEAH 543 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAI THR +R KA +PLD+I G+G RKR LL FG+ K + R++ L +++GIS+ Sbjct: 544 RFAIGTHRAKRAKAVSANPLDDIAGVGATRKRALLAHFGSAKAVGRAALADLKAVDGISE 603 Query: 598 KIACKIYNHFHK 609 +A KIY HFH+ Sbjct: 604 TLAEKIYAHFHE 615 >gi|107102107|ref|ZP_01366025.1| hypothetical protein PaerPA_01003156 [Pseudomonas aeruginosa PACS2] gi|116050572|ref|YP_790609.1| excinuclease ABC subunit C [Pseudomonas aeruginosa UCBPP-PA14] gi|218891335|ref|YP_002440202.1| excinuclease ABC subunit C [Pseudomonas aeruginosa LESB58] gi|254235571|ref|ZP_04928894.1| excinuclease ABC subunit C [Pseudomonas aeruginosa C3719] gi|254241018|ref|ZP_04934340.1| excinuclease ABC subunit C [Pseudomonas aeruginosa 2192] gi|122259695|sp|Q02N77|UVRC_PSEAB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|226732392|sp|B7V4X6|UVRC_PSEA8 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|115585793|gb|ABJ11808.1| excinuclease ABC subunit C [Pseudomonas aeruginosa UCBPP-PA14] gi|126167502|gb|EAZ53013.1| excinuclease ABC subunit C [Pseudomonas aeruginosa C3719] gi|126194396|gb|EAZ58459.1| excinuclease ABC subunit C [Pseudomonas aeruginosa 2192] gi|218771561|emb|CAW27329.1| excinuclease ABC subunit C [Pseudomonas aeruginosa LESB58] Length = 608 Score = 568 bits (1464), Expect = e-159, Method: Composition-based stats. Identities = 216/610 (35%), Positives = 339/610 (55%), Gaps = 24/610 (3%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 PGVY+M D ++LYVGKA +L+KR+ SY + + ++++I + T+T E Sbjct: 16 NRPGVYRMFDADAKLLYVGKAKSLKKRLASYFRKSGLAPKTAALVARIAQVETTITANET 75 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EALLLE +IK +P +NILLRDDKS+P++ ++ + + P L HR + +G YFGP+ S Sbjct: 76 EALLLEQTLIKEWRPPYNILLRDDKSYPFVFLSSEDEYPRLSLHRGAKKRKGRYFGPYPS 135 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 A+ +++N LQ+ F +R C DS FR+RTRPCL +QIKRC GPC G +S E+Y E V + Sbjct: 136 AGAIRESLNLLQKAFLVRQCEDSYFRNRTRPCLQYQIKRCKGPCVGLVSPEEYAEDVRHS 195 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCF 245 FL G ++ L +++ M QA ++ D+E A RD++A L +Q+ +D Sbjct: 196 VMFLEGRSNALADELNVGMEQAAMRLDFEKAAELRDQVAILRRVQDQQSMEGGNGDVDIV 255 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY---TDKPCPEN 302 + AC+ G+ G+ FF + E ++L FL Q+Y ++ P Sbjct: 256 AAIVTPGGACVHLISVRGGRVLGSKNFFPQVAIEEEVGEVLLAFLGQYYLSHQERDLPAE 315 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 ++++ E+ +L + + G +++I+ +G + + + A+ NA ++ +L+ Sbjct: 316 LIVNVTHEDFPVLVSAIAEARGRELEISYRVRGTRARWQQLAVTNAEQALGARLANRQHV 375 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 + + L P+R+E +D SH G + V VV G G +K+ YR++N+ V Sbjct: 376 AARFEALAEALDLAEPPQRLECFDISHSSGEATVASCVVFGPEGPLKSDYRRYNIEG--V 433 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD A M L RRFS+L E PD++++DGGKGQL+ AQ V Sbjct: 434 TAGDDYAAMHQALTRRFSRLKDGE--------------GKMPDILLVDGGKGQLAMAQEV 479 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFA 541 L++L V I ++ +AKG R G+E ++ L P L+ IQ++RDEAHRFA Sbjct: 480 LQELAVAGLI-LLGVAKGVTRKPGLETLYLNDASHEFTLPADSPALHLIQQIRDEAHRFA 538 Query: 542 ITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 IT HR RR KA S L+++ G+GP R+R LL+ FG ++ +SR+S + LA GISKK+A Sbjct: 539 ITGHRARRGKARRTSTLEDVPGVGPKRRRDLLKHFGGLQELSRASIDELAKAPGISKKLA 598 Query: 601 CKIYNHFHKN 610 +IY H Sbjct: 599 EQIYAVLHSE 608 >gi|146342875|ref|YP_001207923.1| excinuclease ABC subunit C [Bradyrhizobium sp. ORS278] gi|146195681|emb|CAL79708.1| excinuclease ABC subunit C [Bradyrhizobium sp. ORS278] Length = 688 Score = 568 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 296/611 (48%), Positives = 391/611 (63%), Gaps = 7/611 (1%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVTCT 65 P PGVY+ML+ A VLYVGKA N++KR+ SY +N RI MI+ + T T Sbjct: 80 PTSPGVYRMLNAAHDVLYVGKAKNVKKRLASYARANAPLPARILRMIAATVTVEIVSTTT 139 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLEAN+IK+LKPRFN+ LRDDKSFPYILIT H P + KHR + + G YFGPF Sbjct: 140 ETEALLLEANLIKQLKPRFNVQLRDDKSFPYILITGDHWAPQILKHRGAQSRPGRYFGPF 199 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 AS AV +TI +LQR F +RSC DS F RTRPCLL QI+RC+GPCT EI Y E V Sbjct: 200 ASAGAVNRTITALQRAFLIRSCTDSFFESRTRPCLLHQIRRCAGPCTQEIDFPGYSELVR 259 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 EA FLSG + +K +A M +A+ + ++E+A ++RDRLAALS I + Sbjct: 260 EATDFLSGRSQAVKALLASEMEKASAELEFETAAVYRDRLAALSAISSQQGINPRTVEEA 319 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+++ +C++ FF GQN G +F + + T ++LS FL QFY DKP P Sbjct: 320 DVFAIHQEGGFSCVEVFFFRTGQNWGNRAYFPRAEKTFTQEEVLSAFLSQFYDDKPPPRL 379 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 ILLS E EE LL + + G+KV+++ PK+GEK+ ++ AL NA + +KL+ + Sbjct: 380 ILLSHEIEEAELLAEALCVKAGHKVEVSCPKRGEKKDLVTHALTNAREALGRKLADTATQ 439 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 +L+ T LP +PKRIE+YDNSHI G +AVG M+V G +GF+KNQYRKFN+ + Sbjct: 440 SRLLEAMTTTLGLPQVPKRIEVYDNSHIQGTNAVGAMIVAGPDGFMKNQYRKFNIKSEGL 499 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD AMM+ VL+RRF +L+ E + +E P WPD+VI+DGG+GQL+A + + Sbjct: 500 TPGDDYAMMKEVLQRRFKRLVAPSEK-DVARAAKEDDVPQWPDLVIIDGGRGQLNAVREI 558 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 +L V + ++S+AKGP R AG E F+ + EA+ L RDP+LYFIQRLRDEAHRF I Sbjct: 559 FTELGV-GNVALMSVAKGPDRDAGRETLFIPEREAIKLEPRDPVLYFIQRLRDEAHRFVI 617 Query: 543 TTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 +HRK RKK L EI GIGP RKR LL FGT+K I R+S L + G+S + A Sbjct: 618 GSHRKLRKKDIREAGLQEIPGIGPSRKRALLHHFGTLKEIERASIADLGKVPGVSAESAR 677 Query: 602 KIYNHFHKNTS 612 KI+ +FH N S Sbjct: 678 KIFEYFHSNAS 688 >gi|330720119|gb|EGG98525.1| Excinuclease ABC subunit C [gamma proteobacterium IMCC2047] Length = 608 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 226/614 (36%), Positives = 358/614 (58%), Gaps = 25/614 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++ PGVYQMLD AG+VLYVGKA NL+ R+ SY + + + ++++ +++ TVT Sbjct: 12 ELTRRPGVYQMLDDAGKVLYVGKAKNLKNRVSSYFRNTGLSIKTQSLMAKAVDVQVTVTA 71 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK LKP +NILLRDDKS+P+I +TD+H+ P+L HR + YFGP Sbjct: 72 SETEALLLEQNLIKSLKPPYNILLRDDKSYPFIFLTDQHEYPSLGLHRGAKRKNVRYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F +V AV +T++ LQ++F +R C +S F++R+RPCL +QI+RC PC IS + Y E V Sbjct: 132 FPNVSAVRETLSLLQKSFKVRQCDESHFKNRSRPCLQYQIERCKAPCVEYISKQAYAEDV 191 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDC 244 + FL G + + ++ M QA+ D+E A RD++ L +Q + D Sbjct: 192 RHTRMFLEGKDREIITELTTQMEQASAALDFEKAAELRDQVIHLRRVQEQQYVSGHSGDV 251 Query: 245 FSLY--HNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKP 298 + + C+Q F G+ G+ T++ K + S+ A++LS F+ QFY Sbjct: 252 DVVAGLVSPMGICVQVLFIRAGRILGSRTYYPKVNMVSSLAELLSGFIPQFYLAGSAQHQ 311 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P+ ++L+ E E+ ++L + + +KV++T +G++ + ++ A+ NA ++ + ++ Sbjct: 312 IPKEVILNAELEDEAMLADALAQSASHKVQLTSRVRGDRARWLQLAINNAEQNLQGRHAS 371 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + + L L PKR+E +D SH G S V VV +NG +K+ YR+FN+ Sbjct: 372 NLDYAGRLTALQAALELSESPKRMECFDISHSSGESTVASCVVFDDNGPLKSDYRRFNI- 430 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + + DD A M+ L+RR+ +L E L PD++ +DGGKGQL Sbjct: 431 -SGITGGDDYAAMQQALKRRYKRLKSGEGKL--------------PDILFIDGGKGQLRM 475 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEA 537 A+ VL +L++ N + ++ +AKG R AG+E F+ + + +VL P L+ IQ +RDEA Sbjct: 476 AEDVLAELDI-NGVLLVGVAKGVTRKAGLESLFMAGRSDEIVLPPDSPALHLIQHIRDEA 534 Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT+HR+ R K SPL+ I G+GP R+R LL FG ++ + R+S E +A + GIS Sbjct: 535 HRFAITSHRQARGKTRRTSPLESIPGVGPKRRRELLTFFGGIQEVERASAEEIAKVPGIS 594 Query: 597 KKIACKIYNHFHKN 610 K +A +IY Sbjct: 595 KSMAEEIYASLRNE 608 >gi|15597781|ref|NP_251275.1| excinuclease ABC subunit C [Pseudomonas aeruginosa PAO1] gi|21264128|sp|Q9I0Q1|UVRC_PSEAE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|9948648|gb|AAG05973.1|AE004687_2 excinuclease ABC subunit C [Pseudomonas aeruginosa PAO1] Length = 608 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 216/610 (35%), Positives = 339/610 (55%), Gaps = 24/610 (3%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 PGVY+M D ++LYVGKA +L+KR+ SY + + ++++I + T+T E Sbjct: 16 NRPGVYRMFDAEAKLLYVGKAKSLKKRLASYFRKSGLAPKTAALVARIAQVETTITANET 75 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EALLLE +IK +P +NILLRDDKS+P++ ++ + + P L HR + +G YFGP+ S Sbjct: 76 EALLLEQTLIKEWRPPYNILLRDDKSYPFVFLSSEDEYPRLSLHRGAKKRKGRYFGPYPS 135 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 A+ +++N LQ+ F +R C DS FR+RTRPCL +QIKRC GPC G +S E+Y E V + Sbjct: 136 AGAIRESLNLLQKAFLVRQCEDSYFRNRTRPCLQYQIKRCKGPCVGLVSPEEYAEDVRHS 195 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCF 245 FL G ++ L +++ M QA ++ D+E A RD++A L +Q+ +D Sbjct: 196 VMFLEGRSNALADELNVGMEQAAMRLDFEKAAELRDQVAILRRVQDQQSMEGGNGDVDIV 255 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY---TDKPCPEN 302 + AC+ G+ G+ FF + E ++L FL Q+Y ++ P Sbjct: 256 AAIVTPGGACVHLISVRGGRVLGSKNFFPQVAIEEEVGEVLLAFLGQYYLSHQERDLPAE 315 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 ++++ E+ +L + + G +++I+ +G + + + A+ NA ++ +L+ Sbjct: 316 LIVNVTHEDFPVLVSAIAEARGRELEISYRVRGTRARWQQLAVTNAEQALGARLANRQHV 375 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 + + L P+R+E +D SH G + V VV G G +K+ YR++N+ V Sbjct: 376 AARFEALAEALDLAEPPQRLECFDISHSSGEATVASCVVFGPEGPLKSDYRRYNIEG--V 433 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD A M L RRFS+L E PD++++DGGKGQL+ AQ V Sbjct: 434 TAGDDYAAMHQALTRRFSRLKDGE--------------GKMPDILLVDGGKGQLAMAQEV 479 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFA 541 L++L V I ++ +AKG R G+E ++ L P L+ IQ++RDEAHRFA Sbjct: 480 LQELAVAGLI-LLGVAKGVTRKPGLETLYLNDASHEFTLPADSPALHLIQQIRDEAHRFA 538 Query: 542 ITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 IT HR RR KA S L+++ G+GP R+R LL+ FG ++ +SR+S + LA GISKK+A Sbjct: 539 ITGHRARRGKARRTSTLEDVPGVGPKRRRDLLKHFGGLQELSRASIDELAKAPGISKKLA 598 Query: 601 CKIYNHFHKN 610 +IY H Sbjct: 599 EQIYAVLHSE 608 >gi|298292426|ref|YP_003694365.1| excinuclease ABC, C subunit [Starkeya novella DSM 506] gi|296928937|gb|ADH89746.1| excinuclease ABC, C subunit [Starkeya novella DSM 506] Length = 687 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 293/632 (46%), Positives = 388/632 (61%), Gaps = 26/632 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + + P PGVY+M+ G VLYVGKA ++++RI +Y T RI M++ + F Sbjct: 53 AIKHAPNGPGVYRMIGPDGGVLYVGKAKSIKRRIVAYTRPAGLTARIMRMVAATAEMEFV 112 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T TE EALLLEAN+IK+L+PRFN+LLRDDKSFPYILIT H P + KHR + G Y Sbjct: 113 STGTETEALLLEANLIKQLRPRFNVLLRDDKSFPYILITRDHVSPQITKHRGARNRPGDY 172 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GPFASV AV +TIN+LQ+ F +RSC+DS + RTRPCLLFQIKRC+GPCTGE+S Y Sbjct: 173 YGPFASVWAVNRTINALQKAFLVRSCSDSFYEARTRPCLLFQIKRCAGPCTGEVSHTDYA 232 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 E+V EA+ FLSG + +KE++A M +A+ ++E A RDRLAALS +Q Sbjct: 233 EYVREARDFLSGKSRAVKEQMAHEMQEASEALEFERAAALRDRLAALSAVQGTQGINPRS 292 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F+++ C+Q FF GQN G + + D ++L FL QFY DKP Sbjct: 293 VEEADVFAIHQEGGATCVQVFFFRTGQNWGNHALYPRADRALEPGEVLESFLAQFYEDKP 352 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 CP ILLS + E LLE + + G++V+I PK+GEKR+++E AL NA + +KL+ Sbjct: 353 CPRLILLSHDVAERELLEEALSTRAGHRVEIATPKRGEKRELVEHALQNAREALGRKLAE 412 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 S +L + + F L PKRIE+YDNSHIMG +AVG M+V G GF K+QYRKFN+ Sbjct: 413 SASQARLLDELGRAFGLEQTPKRIEVYDNSHIMGTNAVGGMIVAGPEGFAKSQYRKFNIR 472 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENL---------------------NFHPKKQE 457 D+ DD MMR VL RRFS+L++ + Sbjct: 473 SADLTPGDDYGMMREVLMRRFSRLLRESPKPVVTVATDGNDMADDATGDVQDVTEDATSD 532 Query: 458 YSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA 517 + +WPD+V++DGG GQL AAQ L +L V + + ++ +AKGP R AG E F+ + E Sbjct: 533 AASSAWPDLVLIDGGPGQLKAAQETLAELGVSD-VPLVGVAKGPDRDAGRETFYQQGREP 591 Query: 518 LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFG 576 L RDP+LYF+QRLRDEAHRFAI +HR RRKK S L EI GIGP RKR LL FG Sbjct: 592 FRLEPRDPVLYFVQRLRDEAHRFAIGSHRARRKKDIAQSGLQEIPGIGPTRKRALLHHFG 651 Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNHFH 608 T+K I R+S L + G++ A +Y+ FH Sbjct: 652 TLKAIERASLADLEGVPGVNAATARAVYDFFH 683 >gi|289208765|ref|YP_003460831.1| excinuclease ABC, C subunit [Thioalkalivibrio sp. K90mix] gi|288944396|gb|ADC72095.1| excinuclease ABC, C subunit [Thioalkalivibrio sp. K90mix] Length = 607 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 228/612 (37%), Positives = 341/612 (55%), Gaps = 24/612 (3%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRFT 61 + + + PGVYQMLD +G VLYVGKA NL+ R+ SY ++ RI M+ QI +IR Sbjct: 14 LKTLTQSPGVYQMLDASGGVLYVGKARNLRSRVASYFRGSDDRGPRIRSMVRQIADIRVA 73 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT TE EALLLEAN+IKR +PR+N+LLRDDKS+PYI ++++ P L HR + Y Sbjct: 74 VTHTEAEALLLEANLIKRHRPRYNVLLRDDKSYPYIFVSNQ-DYPRLGFHRGAKKKGVRY 132 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ S AV +++ LQ+ F +R C DSVF HR+RPCL +QI RC+ PC G I+ E+Y Sbjct: 133 FGPYPSAGAVRESLALLQKLFQVRQCEDSVFAHRSRPCLQYQIGRCTAPCVGYITPEEYA 192 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 V + +FL G + + + + M A+ + D+E A RD++A L I Sbjct: 193 RDVESSVQFLQGKSEVVIADLMQRMEAASERLDFEHAARLRDQIARLRQISEQQFVSGGE 252 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 D +L + ++ F GQN G F + +I++ L Q+Y ++ Sbjct: 253 GDADVIALAQEAGVVAVEIFFVRGGQNLGNRELFPNVPEATDTGEIMAAVLAQYYAERDP 312 Query: 300 PENILLSEEAEETSLLEISFFKQY-GYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P +LLS E E S LE ++ G KV++ +G++ + ++ A NA + ++++ Sbjct: 313 PARVLLSHEPEGASALEAFLSERRGGRKVQLAWSLRGDRARWLDMARRNAELALKTRIAS 372 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + L T + L PKR+E +D SH G V VV G +G +K+ YR+FN+ Sbjct: 373 QAGQTARLDALTAELNLESPPKRMECFDISHTGGERTVASCVVFGPDGPIKSDYRRFNI- 431 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + ++ DD A M L RRF++L K E PD++ +DGGKGQ++ Sbjct: 432 -DGIEPGDDYAAMHQALSRRFARLKKGE--------------GQEPDILFIDGGKGQVTQ 476 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEA 537 A VL L ++ I +I +AKG +R GME + E +L L+ IQ++RDEA Sbjct: 477 ALNVLADLGLD-HIRVIGVAKGEERRPGMETLILSGVEAPSILPAHSGALHLIQQIRDEA 535 Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR RR KA S L+ I G+GP R+ LL+ FG ++ ++R+ + L + GI Sbjct: 536 HRFAITGHRARRAKARKESTLEAIPGLGPKRRSALLRHFGGLRGVARAGVDELTKVPGIH 595 Query: 597 KKIACKIYNHFH 608 +++A IY+ FH Sbjct: 596 RRLAQAIYDQFH 607 >gi|83952485|ref|ZP_00961216.1| excinuclease ABC subunit C [Roseovarius nubinhibens ISM] gi|83836158|gb|EAP75456.1| excinuclease ABC subunit C [Roseovarius nubinhibens ISM] Length = 620 Score = 567 bits (1460), Expect = e-159, Method: Composition-based stats. Identities = 266/604 (44%), Positives = 380/604 (62%), Gaps = 14/604 (2%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+MLD RVLYVGKA NL+ R+ +Y HT RI MI ++ F T TE E Sbjct: 24 SPGVYRMLDAQARVLYVGKARNLRARVSNYARPTGHTGRIQRMIRDTASMMFLTTATETE 83 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE N+IK+LKPR+N+LLRDDKSFP IL+T H P + KHR + +G+Y+GPFAS Sbjct: 84 ALLLEQNLIKQLKPRYNVLLRDDKSFPNILVTKAHDYPMIKKHRGAKREKGAYYGPFASA 143 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 AV +T+ LQR F LR+C+D++F RTRPCL +QIKRC+ PC G IS E Y V +A+ Sbjct: 144 GAVNRTLAQLQRVFMLRNCSDTMFEGRTRPCLQYQIKRCTAPCVGYISREDYAAQVSDAE 203 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCF 245 +FLSG + ++EK+A++M A+ + ++E A RDR+ AL+ +Q D Sbjct: 204 RFLSGRSTEIQEKLAQDMQAASDEMEFEKAAALRDRIKALTQVQTAQGINPRTVKDADVI 263 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILL 305 +L+ K AC+Q F GQN G F+ + + ++L F+ QFY K P ++L Sbjct: 264 ALHLEKGQACVQVFFIRGGQNWGNRDFYPRVGVDVEEPEVLEAFIGQFYDSKEPPRQLIL 323 Query: 306 SEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365 S E+ L+ + ++ G KV+I VP +GEK ++++ AL NA S +K++ + + Sbjct: 324 SHALEDNDLMAAALGERLGRKVEILVPIRGEKAELVDGALRNARESLARKMAESATQAKL 383 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 L + F L P RIE+YDNSHI G AVG M+V G +GF+KNQYRKFN+ +++ Sbjct: 384 LSGLAEAFGLDAPPGRIEVYDNSHIQGAHAVGAMIVAGPDGFLKNQYRKFNIRGDELTPG 443 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD MM+ VL+RRF +L+K + E WPD++++DGG GQ+SA ++++ Sbjct: 444 DDFGMMKEVLKRRFKRLLKED---------PERDKGLWPDLLLIDGGAGQVSAVASIMRE 494 Query: 486 LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545 + VE+ I ++ +AKG R G E+F + L DP+LYF+QRLRDEAHRFAI TH Sbjct: 495 MGVED-IAMVGVAKGVDRDHGKEEFHRVGTRPMALRHNDPVLYFVQRLRDEAHRFAIGTH 553 Query: 546 RKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 R +R KA SPLDE+ G+G RKR LL FG+ K +SR++ L ++EG+S+ +A ++Y Sbjct: 554 RAKRSKAVSASPLDEVPGVGAARKRALLAHFGSAKAVSRAALADLKAVEGVSEALAQRVY 613 Query: 605 NHFH 608 +HFH Sbjct: 614 DHFH 617 >gi|296388947|ref|ZP_06878422.1| excinuclease ABC subunit C [Pseudomonas aeruginosa PAb1] gi|313107618|ref|ZP_07793803.1| excinuclease ABC subunit C [Pseudomonas aeruginosa 39016] gi|310880305|gb|EFQ38899.1| excinuclease ABC subunit C [Pseudomonas aeruginosa 39016] Length = 608 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 216/610 (35%), Positives = 339/610 (55%), Gaps = 24/610 (3%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 PGVY+M D ++LYVGKA +L+KR+ SY + + ++++I + T+T E Sbjct: 16 NRPGVYRMFDADAKLLYVGKAKSLKKRLASYFRKSGLAPKTAALVARIAQVETTITANET 75 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EALLLE +IK +P +NILLRDDKS+P++ ++ + + P L HR + +G YFGP+ S Sbjct: 76 EALLLEQTLIKEWRPPYNILLRDDKSYPFVFLSSEDEYPRLSLHRGAKKRKGRYFGPYPS 135 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 A+ +++N LQ+ F +R C DS FR+RTRPCL +QIKRC GPC G +S E+Y E V + Sbjct: 136 AGAIRESLNLLQKAFLVRQCEDSYFRNRTRPCLQYQIKRCKGPCVGLVSPEEYAEDVRHS 195 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCF 245 FL G ++ L +++ M QA ++ D+E A RD++A L +Q+ +D Sbjct: 196 VMFLEGRSNALADELNVGMEQAAMRLDFEKAAELRDQVAILRRVQDQQSMEGGNGDVDIV 255 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY---TDKPCPEN 302 + AC+ G+ G+ FF + E ++L FL Q+Y ++ P Sbjct: 256 AAIVTPGGACVHLISVRGGRVLGSKNFFPQVAIEEEVGEVLLAFLGQYYLSHQERDLPAE 315 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 ++++ E+ +L + + G +++I+ +G + + + A+ NA ++ +L+ Sbjct: 316 LIVNVTHEDFPVLVSAIAEARGRELEISYRVRGTRARWQQLAVTNAEQALGARLANRQHV 375 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 + + L P+R+E +D SH G + V VV G G +K+ YR++N+ V Sbjct: 376 AARFEALAEALDLAEPPQRLECFDISHSSGEATVASCVVFGPEGPLKSDYRRYNIEG--V 433 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD A M L RRFS+L E PD++++DGGKGQL+ AQ V Sbjct: 434 TAGDDYAAMHQALTRRFSRLKDGE--------------GKMPDILLVDGGKGQLAMAQEV 479 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFA 541 L++L V I ++ +AKG R G+E ++ L P L+ IQ++RDEAHRFA Sbjct: 480 LQELAVAGLI-LLGVAKGVTRKPGLETLYLNDASHEFTLPADSPALHLIQQIRDEAHRFA 538 Query: 542 ITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 IT HR RR KA S L+++ G+GP R+R LL+ FG ++ +SR+S + LA GISKK+A Sbjct: 539 ITGHRARRGKARRTSTLEDVPGVGPKRRRDLLKYFGGLQELSRASIDELAKAPGISKKLA 598 Query: 601 CKIYNHFHKN 610 +IY H Sbjct: 599 EQIYAVLHSE 608 >gi|254454102|ref|ZP_05067539.1| excinuclease ABC, C subunit [Octadecabacter antarcticus 238] gi|198268508|gb|EDY92778.1| excinuclease ABC, C subunit [Octadecabacter antarcticus 238] Length = 621 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 250/605 (41%), Positives = 377/605 (62%), Gaps = 14/605 (2%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+MLD RVLYVGKA +L+ R+ +Y + H+ RI MIS ++ F T TE E Sbjct: 25 SPGVYRMLDSQARVLYVGKARSLKNRVSNYARPSGHSARIATMISHTASMMFLTTNTETE 84 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE N+IK+LKP++N+LLRDDKSFP ILI+ H P + KHR + +G+Y+GPFAS Sbjct: 85 ALLLEQNLIKQLKPKYNVLLRDDKSFPNILISGDHDFPRIEKHRGAKRKKGNYYGPFASA 144 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 AV +T+N+LQR F LR+C+DS + RTRPCL +QIKRC+ PC G++ E Y + V +A+ Sbjct: 145 GAVNRTLNTLQRAFLLRNCSDSEYEGRTRPCLQYQIKRCAAPCVGKVKQEDYKQLVKDAE 204 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNRMDCF 245 +FL+G + ++ +A M +A+ ++E A RDR+ AL+ +Q D Sbjct: 205 RFLAGKSTEMQASLAAQMQKASEDMEFERAAALRDRIKALTQVQTSQGINPRGVREADVI 264 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILL 305 +L+ + AC+Q F QN G ++ + + ++++ F+ QFY+D+ P +LL Sbjct: 265 ALHTDGGQACVQVFFIRANQNWGNHDYYPRVSGDEDASEVMQAFVGQFYSDRDPPPMLLL 324 Query: 306 SEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365 S ++ L+ + + KV+I VP++GEK +++ A NA S +K+S + + Sbjct: 325 SHGLDDEDLVTEALSGKIDRKVEIIVPQRGEKAELVSGAARNARESLGRKMSETATQGRL 384 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 L+ + F L +P+RIE+YDNSHI G AVG M+V G +GF KNQYRKFN+ +D+ Sbjct: 385 LRGLKEAFDLAEVPQRIEVYDNSHIQGAFAVGAMIVAGPDGFDKNQYRKFNIRGDDLTPG 444 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD MM+ VL RRF +L+K + N +WP ++++DGG GQ+SA + ++ + Sbjct: 445 DDFGMMKEVLMRRFKRLLKEDPN---------RELGTWPGLLLIDGGAGQVSAVRAIMDE 495 Query: 486 LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545 + V + ++ +AKG R G E+F+ + L DP+LYF+QR+RDEAHRFAI TH Sbjct: 496 VGV-GDVPMVGVAKGVDRDHGKEEFYRTGKPVMALQRNDPVLYFVQRMRDEAHRFAIGTH 554 Query: 546 RKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 R +R KA +PLD++ G+G RKR LLQ FG+ K + R++ L ++EGIS +A IY Sbjct: 555 RAKRSKAIGATPLDDVPGVGATRKRALLQHFGSAKAVGRAALADLKAVEGISGNMAETIY 614 Query: 605 NHFHK 609 +F++ Sbjct: 615 GYFNE 619 >gi|152985488|ref|YP_001347977.1| excinuclease ABC subunit C [Pseudomonas aeruginosa PA7] gi|189038074|sp|A6V4J2|UVRC_PSEA7 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|150960646|gb|ABR82671.1| excinuclease ABC, C subunit [Pseudomonas aeruginosa PA7] Length = 608 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 215/610 (35%), Positives = 338/610 (55%), Gaps = 24/610 (3%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 PGVY+M D ++LYVGKA +L+KR+ SY + + ++ +I + T+T E Sbjct: 16 NRPGVYRMFDADAKLLYVGKAKSLKKRLASYFRKSGLAPKTAALVVRIAQVETTITANET 75 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EALLLE +IK +P +NILLRDDKS+P++ ++ + + P L HR + +G YFGP+ S Sbjct: 76 EALLLEQTLIKEWRPPYNILLRDDKSYPFVFLSSEDEYPRLSLHRGAKKRKGRYFGPYPS 135 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 A+ +++N LQ+ F +R C DS FR+RTRPCL +QIKRC GPC G + E+Y E V + Sbjct: 136 AGAIRESLNLLQKAFLVRQCEDSYFRNRTRPCLQYQIKRCKGPCVGLVGPEEYAEDVRHS 195 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCF 245 FL G ++ L +++ M QA ++ D+E A RD++A L +Q+ +D Sbjct: 196 VMFLEGRSNALADELNTGMEQAAMRLDFEKAAELRDQVAILRRVQDQQSMEGGNGDVDIV 255 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY---TDKPCPEN 302 + AC+ G+ G+ FF + E ++L FL Q+Y ++ P Sbjct: 256 AAIVTPGGACVHLISVRGGRVLGSKNFFPQVAIEEEVGEVLLAFLGQYYLSHQERDLPAE 315 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 ++++ E+ +L + + G +++I+ +G + + + A+ NA ++ +L+ Sbjct: 316 LIVNVMHEDFPVLVAAIAEARGRQLEISYRVRGTRARWQQLAVTNAEQALGARLANRQHV 375 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 + + L P+R+E +D SH G + V VV G G +K+ YR++N+ V Sbjct: 376 AARFEALAEALDLAEPPQRLECFDISHSSGEATVASCVVFGPEGPLKSDYRRYNIEG--V 433 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD A M L RRFS+L + E PD++++DGGKGQL+ AQ V Sbjct: 434 TAGDDYAAMHQALTRRFSRLKEGE--------------GKMPDILLVDGGKGQLAMAQEV 479 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFA 541 L++L V I ++ +AKG R G+E ++ L P L+ IQ++RDEAHRFA Sbjct: 480 LQELAVAGLI-LLGVAKGVTRKPGLETLYLNDAAHEFTLPADSPALHLIQQIRDEAHRFA 538 Query: 542 ITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 IT HR RR KA S L+++ G+GP R+R LL+ FG ++ +SR+S + LA GISKK+A Sbjct: 539 ITGHRARRGKARRTSTLEDVPGVGPKRRRDLLKHFGGLQELSRASIDELAKAPGISKKLA 598 Query: 601 CKIYNHFHKN 610 +IY H Sbjct: 599 EQIYAVLHSE 608 >gi|56698457|ref|YP_168831.1| excinuclease ABC subunit C [Ruegeria pomeroyi DSS-3] gi|81348818|sp|Q5LMC7|UVRC_SILPO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|56680194|gb|AAV96860.1| UvrABC system protein C [Ruegeria pomeroyi DSS-3] Length = 623 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 262/610 (42%), Positives = 375/610 (61%), Gaps = 15/610 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY+MLD RVLYVGKA NL+ R+ +Y H+ RI MI + ++ F T Sbjct: 25 NLSGAPGVYRMLDAQARVLYVGKARNLKARVSNYARP-GHSPRIERMIRETASMMFLTTR 83 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLE N+IK+LKP++N+LLRDDKSFP IL+ H + KHR + +G+YFGP Sbjct: 84 TETEALLLEQNLIKQLKPKYNVLLRDDKSFPNILVAKDHSFAQIKKHRGAKKEKGTYFGP 143 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 FAS AV +T+N LQ+ F LR+C D+VF RTRPCLL+QIKRCS PC G IS + Y V Sbjct: 144 FASAGAVNRTLNQLQKAFLLRNCTDAVFESRTRPCLLYQIKRCSAPCVGLISDQDYAAAV 203 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 +A++FLSG + ++E++A M A+ ++E A RDR+ AL+ +Q Sbjct: 204 KDAERFLSGRSTRVQEELAEQMMAASEAMEFERAAALRDRIRALTTVQGTQGINPRGVAE 263 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D +L+ AC+Q F QN G F+ + + + A+++ FL QFY +K P Sbjct: 264 ADVVALHLENGQACVQVFFIRANQNWGNRDFYPRVGEDVSAAEVMEAFLGQFYDNKEPPR 323 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 ++LS+ E L+ + ++ G KV++ VP++GEK +++ AL NA S +++S + Sbjct: 324 QLILSDAIENADLMTEALSEKAGRKVELLVPQRGEKAELVSGALRNARESLARRMSESAT 383 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 +L + F L P+RIE+YDNSHI G +AVG M+V G GF+KNQYRKFN+ +D Sbjct: 384 QTKLLGGLAEAFDLDGPPQRIEVYDNSHIQGTNAVGGMIVAGPEGFLKNQYRKFNIRGDD 443 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 + DD MM+ VL RRF++L+K + + WPD++++DGG GQ+SA Sbjct: 444 LTPGDDFGMMKEVLTRRFTRLLKED---------PDRDKGLWPDLLLIDGGAGQVSAVHE 494 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 ++ V++ I ++ +AKG R G E+F L DP+LYFIQRLRDEAHRFA Sbjct: 495 IMMAHGVQD-IPMVGVAKGIDRDHGKEEFHRTGQRPFALKRNDPVLYFIQRLRDEAHRFA 553 Query: 542 ITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 I THR +R KA +PLD+I G+G RKR LL FG+ K +SR+ L ++EG+S +A Sbjct: 554 IGTHRAKRAKAVSATPLDDIPGVGAARKRALLAHFGSAKAVSRADLADLTAVEGVSAGLA 613 Query: 601 CKIYNHFHKN 610 KIY+ FH++ Sbjct: 614 QKIYDFFHES 623 >gi|254462934|ref|ZP_05076350.1| excinuclease ABC, C subunit [Rhodobacterales bacterium HTCC2083] gi|206679523|gb|EDZ44010.1| excinuclease ABC, C subunit [Rhodobacteraceae bacterium HTCC2083] Length = 625 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 260/611 (42%), Positives = 373/611 (61%), Gaps = 14/611 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+MLD RVLYVGKA NL+ R+ +Y H+ RI MI+Q + F Sbjct: 23 LKTLDSSPGVYRMLDEQSRVLYVGKARNLRARVSNYARPTGHSGRIATMIAQTTTMMFLT 82 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N+IK+LKP++N+LLRDDKSFP IL++ H P + KHR + +G+Y+ Sbjct: 83 TKTETEALLLEQNLIKQLKPKYNVLLRDDKSFPNILVSKNHAYPMISKHRGAKKAKGAYY 142 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPFAS AV +T+N LQR F LR C+DS F RTRPCL QIKRCS PC G+IS Y E Sbjct: 143 GPFASAGAVNRTLNQLQRAFQLRDCSDSSFDVRTRPCLQHQIKRCSAPCVGKISEVDYAE 202 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---Y 239 V +A++FL+G + L+EK+A M QA+ + ++E A RDR+ AL+ +Q Sbjct: 203 TVRDAERFLAGKSTELQEKLAGQMAQASEEMEFERAAALRDRIKALTQVQTAQGINPRGV 262 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 + D +L+ AC+Q F QN G ++ + ++ ++L F+ QFY K Sbjct: 263 SEADVIALHMEGGQACVQVFFIRANQNWGNKDYYPRLAADVDEPEVLEAFMGQFYDTKDP 322 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P ILLS L+ + ++ G KV++ VP++GEK +I++ A+ NA S +K++ Sbjct: 323 PRQILLSHGLLNEDLMADALAQKLGRKVELIVPQRGEKAEIMDGAVRNARESLARKMAET 382 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + +LK + F L P+RIE+YDNSHI G AVG M+V G GF+KN YRKFN+ Sbjct: 383 QAQSKLLKGLAEAFGLEKAPQRIEVYDNSHIQGAHAVGGMIVAGPEGFIKNAYRKFNIKG 442 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 +D+ DD MM+ V+ RRF +LIK + + WPD++++DGG GQ+SA Sbjct: 443 DDLTPGDDFGMMKEVMTRRFKRLIKED---------PDREKGDWPDLLLIDGGAGQVSAV 493 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 + +++ V I ++ +AKG R AG E+F+ L DP+LYFIQR+RDE HR Sbjct: 494 REIMESYGV-GDIPMVGVAKGVDRDAGKEEFYRTGQRPFALRHNDPVLYFIQRMRDEVHR 552 Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAI THR +R K +PLD++ G+G RKR LL FG+ K + R++ L +++GIS Sbjct: 553 FAIGTHRAKRSKMIGTTPLDDVPGVGAGRKRALLAHFGSAKAVGRANLVDLKAVDGISAA 612 Query: 599 IACKIYNHFHK 609 +A IY++FH+ Sbjct: 613 LAQVIYDYFHE 623 >gi|114764453|ref|ZP_01443678.1| excinuclease ABC subunit C [Pelagibaca bermudensis HTCC2601] gi|114543020|gb|EAU46039.1| excinuclease ABC subunit C [Roseovarius sp. HTCC2601] Length = 626 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 263/610 (43%), Positives = 382/610 (62%), Gaps = 15/610 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVT 63 + PGVY+MLD RVLYVGKA NL+ R+ +Y + H+ RI+ MIS+ ++ F T Sbjct: 25 TLDSSPGVYRMLDDQSRVLYVGKARNLRARVSNYSRPSAQHSRRISRMISETASMMFLTT 84 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLE N+IK+LKP+FN+LLRDDKSFP I +T +H P + KHR + T +G+Y+G Sbjct: 85 RTETEALLLEQNLIKQLKPKFNVLLRDDKSFPNIQVTTEHPFPQIRKHRGAKTEKGAYYG 144 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +T+N LQ+ F LR+C+DS+F RTRPCLL+QIKRCS PC G IS Y E Sbjct: 145 PFASAGAVNRTLNQLQKAFLLRNCSDSMFEGRTRPCLLYQIKRCSAPCVGYISEADYAES 204 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--- 240 V +A++FLSG + ++E +A M +A+ ++E A RDR+ AL+ +Q Sbjct: 205 VRDAERFLSGKSTRVQETLAAQMAEASEAMEFERAAALRDRIRALTQVQTVQGINPQTVA 264 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D +L+ AC+Q F QN G ++ + + ++L FL QFY K P Sbjct: 265 EADVIALHMEGGQACVQVFFIRANQNWGNKDYYPRVGEDVEPQEVLEAFLGQFYDTKEPP 324 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 +LL+ E E L+ + + G KV+I VP +GEK +++E A NA S ++++ Sbjct: 325 RLLLLNHEIENPDLMCQALSDKLGRKVEIAVPLRGEKAELVEGAARNARESLARRMAETA 384 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 + +L+ + FAL P+RIE+YDNSHIMG +AVG M+V G +GF+KNQYRK+N+ Sbjct: 385 TQAKLLRGLAEAFALDAPPQRIEVYDNSHIMGTNAVGGMIVAGPDGFMKNQYRKYNIKGE 444 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 ++ DD MM+ VL RRF++L+K++ + WPD++++DGG GQ+SA Sbjct: 445 ELVPGDDFGMMKEVLTRRFTRLLKDD---------PDREKGLWPDLLLIDGGAGQVSAVA 495 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 ++ + VE+ + ++ +AKG R AG E+F L DP+LYF+QRLRDEAHRF Sbjct: 496 EIMHEFGVED-VPMVGVAKGIDRDAGKEEFHRVGQRPFALRHNDPVLYFVQRLRDEAHRF 554 Query: 541 AITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI THR +R K+ +PLDE+ G+G RKR LL FG+ K +SR++ L +++G+S + Sbjct: 555 AIGTHRAKRAKSQMANPLDEVPGVGAARKRALLAHFGSAKAVSRANLADLKAVDGVSAAL 614 Query: 600 ACKIYNHFHK 609 A +IY FH+ Sbjct: 615 AERIYAFFHE 624 >gi|300023522|ref|YP_003756133.1| excinuclease ABC, C subunit [Hyphomicrobium denitrificans ATCC 51888] gi|299525343|gb|ADJ23812.1| excinuclease ABC, C subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 670 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 288/639 (45%), Positives = 390/639 (61%), Gaps = 34/639 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P+ PGVY+MLD AG V+YVGKA L+ R+ +Y N HT+RI MI ++ F Sbjct: 29 LKTLPQSPGVYRMLDTAGEVIYVGKARQLKSRVSNYARLNGHTNRIARMILATASMEFVT 88 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 TE EALLLEAN+IKR +PRFN+L+RDDKSFPYILI H PA+ KHR + +G YF Sbjct: 89 VSTEAEALLLEANLIKRFRPRFNVLMRDDKSFPYILIARDHPAPAVMKHRGARNRKGEYF 148 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPFAS AV++T+N LQR F LRSC+DSV+ RTRPCLL+QIKRCS PCTGEI + Y E Sbjct: 149 GPFASAGAVDRTVNMLQRAFLLRSCSDSVYESRTRPCLLYQIKRCSAPCTGEIQLDDYRE 208 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240 V EA++FL G + +++ + M +A ++E+A +R+RL AL+H+ + Sbjct: 209 LVVEAERFLKGESQSVRAMYQQLMQEAADALEFETAAKYRNRLWALAHVTADQAINPDGV 268 Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 D F+ Y + CIQ FF GQN G ++ K D +L F+ QFY DKP Sbjct: 269 EEADVFAAYQDGGQTCIQVFFFRTGQNWGNRAYYPKADRSLDAPDVLDSFIAQFYDDKPV 328 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P IL+S + +LL + + KV+I VP +G K ++E AL NA + +KL+ Sbjct: 329 PRLILISHDIPNRALLAEALASKAQRKVEIRVPARGTKSSLVEHALTNAREALGRKLAES 388 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + +L+ ++FAL P+RIE++DNSHI G +AVG M+V G GFVK QYRKFN+ Sbjct: 389 STQARLLEGVAERFALAAPPRRIEVFDNSHIAGTNAVGAMIVAGPEGFVKGQYRKFNIKS 448 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIK----------------------------NEENLNF 451 DV DD AMMR VL RRF ++ + + Sbjct: 449 PDVTPGDDYAMMREVLTRRFKRIADAEVLEEIETEVAELVADTVSEAIPAALVEQAVVEE 508 Query: 452 HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF 511 + +FP PD+V++DGG GQLS A+ VL + + I +I +AKGP R AG E F Sbjct: 509 TTADDDVAFPDRPDLVLIDGGLGQLSVAREVLAGFGLHD-IQLIGVAKGPDRDAGREHFH 567 Query: 512 -VKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKR 569 + + ++L RDP+LYF+QRLRDEAHRFAI THR +R KA +PLDEI+GIGP RKR Sbjct: 568 IPGREQPIMLETRDPVLYFVQRLRDEAHRFAIGTHRAKRAKALGVNPLDEIDGIGPTRKR 627 Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 LL+ FG+ K +SR+ E L ++EGIS +A +IY+ FH Sbjct: 628 ALLKHFGSAKAVSRAGIEDLKAVEGISADMARRIYDFFH 666 >gi|84685236|ref|ZP_01013135.1| excinuclease ABC subunit C [Maritimibacter alkaliphilus HTCC2654] gi|84666968|gb|EAQ13439.1| excinuclease ABC subunit C [Rhodobacterales bacterium HTCC2654] Length = 620 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 273/612 (44%), Positives = 383/612 (62%), Gaps = 16/612 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+ PGVY+MLD GRVLYVGKA +L+ R+ +Y + H+ RI MISQ ++ F T Sbjct: 18 QLDNSPGVYRMLDETGRVLYVGKAKSLKNRVTNYANRTGHSARIARMISQTASMMFLTTR 77 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLE N+IK+LKP FN+LLRDDKSFP IL+T H P + KHR + +G+Y+GP Sbjct: 78 TETEALLLEQNLIKQLKPHFNVLLRDDKSFPNILVTKDHPYPQIRKHRGAKKTKGAYYGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 FAS DAV +T+N LQ+ F LR+C+DS+F RTRPCLL+QIKRC+GPC G+IS E Y E V Sbjct: 138 FASADAVNRTLNQLQKVFLLRNCSDSMFESRTRPCLLYQIKRCAGPCVGKISEEGYGELV 197 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241 +A++FLSG ++ ++A M A+ ++E A + RDR+AAL+ +Q+ Sbjct: 198 GDAERFLSGKTTKVQSELAAEMQAASEAMEFERAAVLRDRIAALTKVQSSQGINPRGVTE 257 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT--DSESTNAQILSYFLRQFYTDKPC 299 D +L+ AC+Q F QN G F+ +T + + A++L F+ QFY K Sbjct: 258 ADVIALHMEGGQACVQVFFIRANQNWGNRDFYPRTGAGAGADEAEVLRGFIGQFYDQKEP 317 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 +LLS + EE L+ + ++ G KV I VP++GEK +++ A NA S +KL+ Sbjct: 318 ARLLLLSHDIEERELMSEALAEKLGRKVAIEVPQRGEKMELVSNAARNARESLGRKLAET 377 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + +L + F L PKRIE+YDNSHI G AVG M+V G GF+K+QYRKFN+ Sbjct: 378 ATQAKLLAGLAEAFDLDEAPKRIEVYDNSHIQGAHAVGGMIVAGPEGFMKSQYRKFNIKG 437 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 D+ DD MM+ VL RRF +L+K + + WPD++++DGG GQ+SA Sbjct: 438 EDLTPGDDFGMMKEVLTRRFKRLLKEDPDRESDA---------WPDLLLIDGGAGQVSAV 488 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 +++ L VE+ I +I +AKG R G E+F K L DP+LYF+QR+RDEAHR Sbjct: 489 NEIMEDLGVED-IAMIGVAKGVDRDHGKEEFHRPKQRPFALKRNDPVLYFVQRMRDEAHR 547 Query: 540 FAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAI THR +R KA +PLD++ G+G RK+ LL FG+ K ++ +S L +++GIS Sbjct: 548 FAIGTHRAKRTKAISANPLDDVPGVGAGRKKALLAHFGSAKAVTTASLSDLKAVKGISAS 607 Query: 599 IACKIYNHFHKN 610 +A IY HFH+N Sbjct: 608 LAETIYGHFHEN 619 >gi|115522949|ref|YP_779860.1| excinuclease ABC subunit C [Rhodopseudomonas palustris BisA53] gi|115516896|gb|ABJ04880.1| Excinuclease ABC subunit C [Rhodopseudomonas palustris BisA53] Length = 680 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 288/610 (47%), Positives = 386/610 (63%), Gaps = 7/610 (1%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 P PGVY+ML+ VLYVGKA N++KR+ SY H RI+ MI+ ++ T TE Sbjct: 74 PTSPGVYRMLNAGNDVLYVGKAKNVKKRLASYARPTGHVMRISRMIAATVSVEIISTATE 133 Query: 67 VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126 EALLLEAN+IK+L+PRFN+LLRDDKSFPYILI+ H P + KHR + + G YFGPFA Sbjct: 134 TEALLLEANLIKQLRPRFNVLLRDDKSFPYILISGDHWAPQILKHRGAQSRPGRYFGPFA 193 Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186 SV AV +TI +LQR F +RSC DS F RTRPCLL+QIKRC+GPCTGE+ Y VHE Sbjct: 194 SVGAVNRTITALQRAFLVRSCTDSFFESRTRPCLLYQIKRCAGPCTGEVDFPGYTALVHE 253 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMD 243 A FLSG + +K+++A M +A+ ++E+A ++RDRLAALS IQ+ D Sbjct: 254 ATDFLSGRSRVVKQQLAGEMEKASDALEFETAALYRDRLAALSAIQSQQGINPRTVEEAD 313 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303 F+++ C++ FF GQN G +F + + + ++L FL QFY DK P I Sbjct: 314 VFAVHQEGGYFCVEVFFFRTGQNWGNRAYFPRAEKTFSAEEVLGAFLAQFYDDKQAPRQI 373 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 LLS + EE LL + + G+KV+I P++GEK++++ AL NA + +KL+ + Sbjct: 374 LLSHKIEECELLAEALCIKAGHKVEILTPQRGEKKELVFHALTNAREALGRKLADTATQT 433 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 +L+ LP P+RIE+YDNSHI G +AVG M+V G +GF+KNQYRKFN+ + Sbjct: 434 RLLEALVTTLELPRTPQRIEVYDNSHIQGTNAVGAMIVAGPDGFIKNQYRKFNIRSEAIT 493 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD MMR VLERRF +L+ ++ P WPD+VI+DGG+GQL+A + Sbjct: 494 PGDDYGMMREVLERRFKRLL--APPAEGAAAPKDDEVPQWPDLVIIDGGRGQLNAVSEIF 551 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 KL ++ T++++AKGP R AG E F+ EA+ L RDP+LYFIQRLRDEAHRF I Sbjct: 552 AKLGLDQA-TLMAVAKGPDRDAGRETLFMPGREAIKLEPRDPVLYFIQRLRDEAHRFVIG 610 Query: 544 THRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 +HRK RKK L EI GIGP RKR LL FGT+K I R+S L + GIS + A + Sbjct: 611 SHRKLRKKDIREAGLQEIPGIGPSRKRALLHHFGTLKEIERASLGDLGKVPGISAESARR 670 Query: 603 IYNHFHKNTS 612 I++ FH Sbjct: 671 IFDFFHPQPG 680 >gi|260427615|ref|ZP_05781594.1| excinuclease ABC, C subunit [Citreicella sp. SE45] gi|260422107|gb|EEX15358.1| excinuclease ABC, C subunit [Citreicella sp. SE45] Length = 625 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 269/612 (43%), Positives = 382/612 (62%), Gaps = 16/612 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFT 61 + + PGVY+MLD RVLYVGKA NL+ R+ SY + H+ RI MIS+ ++ F Sbjct: 23 LKTLDSSPGVYRMLDDQSRVLYVGKARNLKARVSSYSRPSAQHSRRIARMISETASMMFL 82 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T TE EALLLE N+IK+LKP+FN+LLRDDKSFP I++T H P + KHR + T +G+Y Sbjct: 83 TTRTETEALLLEQNLIKQLKPKFNVLLRDDKSFPNIMVT-DHAFPQIRKHRGAKTEKGAY 141 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GPFAS AV +T+N LQ+ F LR+C+DS+F RTRPCLL+QIKRCS PC G +S E Y Sbjct: 142 YGPFASAGAVNRTLNQLQKVFLLRNCSDSMFEGRTRPCLLYQIKRCSAPCVGYVSPEDYA 201 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 V +A++FLSG + ++E +A M +A+ ++E A RDR+ AL+ +Q Sbjct: 202 ASVRDAQRFLSGKSTAVQETLAAQMMEASEAMEFERAAALRDRIRALTQVQTVQGINPRS 261 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D +L+ AC+Q F QN G ++ + + A++L F+ QFY K Sbjct: 262 VAEADVIALHMENGQACVQVFFIRANQNWGNKDYYPRVGEDVDAAEVLEAFVGQFYDTKE 321 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P +LLS E E L+ + + G KV+I VP +GEK ++IE A NA S +++S Sbjct: 322 PPRLLLLSHEIENPDLMCEALTGKLGRKVEIAVPLRGEKAELIEGAARNARESLARRMSE 381 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + +L+ + F L P+RIE+YDNSHIMG +AVG MVV G +GF+KNQYRK+N+ Sbjct: 382 TATQAKLLRGVAEAFGLDGPPQRIEVYDNSHIMGTNAVGAMVVAGPDGFMKNQYRKYNIR 441 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 D+ DD MM+ VL RRF++L+K + E WPD++++DGG GQ+SA Sbjct: 442 GEDLVPGDDFGMMKEVLSRRFTRLLKED---------PERDKGLWPDLLLIDGGAGQVSA 492 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 ++++ VE+ + ++ +AKG R AG E+F L DP+LYFIQRLRDEAH Sbjct: 493 VAEIMREHGVED-VPMVGVAKGIDRDAGKEEFHRVGQRPFALRHNDPVLYFIQRLRDEAH 551 Query: 539 RFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAI THR +R K+ +PLDE+ G+G RKR LL FG+ K +SR++ L +++G+S Sbjct: 552 RFAIGTHRAKRAKSQMANPLDEVPGVGASRKRALLAHFGSAKAVSRANLADLRAVDGVSA 611 Query: 598 KIACKIYNHFHK 609 +A +IY FH+ Sbjct: 612 ALAERIYAFFHE 623 >gi|89056410|ref|YP_511861.1| excinuclease ABC subunit C [Jannaschia sp. CCS1] gi|119367660|sp|Q28KC6|UVRC_JANSC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|88865959|gb|ABD56836.1| Excinuclease ABC subunit C [Jannaschia sp. CCS1] Length = 631 Score = 565 bits (1455), Expect = e-159, Method: Composition-based stats. Identities = 261/607 (42%), Positives = 373/607 (61%), Gaps = 14/607 (2%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+MLD RVLYVGKA L++R+ SY + H+ RI MI ++ F T TE E Sbjct: 35 SPGVYRMLDSQSRVLYVGKARALKRRVASYAKPSGHSPRIARMIRDTASMMFLTTRTETE 94 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE N+IK+LKP+FN+LLRDDKSFP IL++D+H P + KHR S +GSYFGPFAS Sbjct: 95 ALLLEQNLIKQLKPKFNVLLRDDKSFPNILVSDEHAFPQIKKHRGSKKEKGSYFGPFASA 154 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 AV +T+N LQ+ F LR+C D+VF RTRPCLL+QIKRCSGPC G IS E Y V +A Sbjct: 155 GAVNRTLNQLQKVFLLRNCTDAVFESRTRPCLLYQIKRCSGPCVGHISEEDYGASVKDAV 214 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNRMDCF 245 +FL G + +L+ ++A M A+ ++E A RDR+ AL+++Q+ D Sbjct: 215 RFLKGDSTDLQRQLADGMAAASEAMEFERAAALRDRIRALTNVQSAQGINPQGVKEADVI 274 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILL 305 +L+ AC+Q F QN G F+ + ++ ++L FL QFY K P+ +LL Sbjct: 275 ALHMEGGQACVQVFFIRANQNWGNRDFYPRVGADIEEPEVLEAFLGQFYDQKEPPKQLLL 334 Query: 306 SEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365 S E L+ + + G KV+I VP++GEK ++++ A NA S +K++ + + Sbjct: 335 SHPVESMDLMVDALSGKRGTKVEILVPQRGEKAELVDGARRNARESLGRKMAETQAQGKL 394 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 L F L PKR+E+YDNSHI G AVG M+V G G++K+QYRKFN+ + Sbjct: 395 LDGLAGAFGLDGPPKRVEVYDNSHIQGAHAVGAMIVAGPEGYLKSQYRKFNIKGGSLTPG 454 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD MM+ VL RRF++L+K + + WPD++++DGG GQ+SA + ++ Sbjct: 455 DDFGMMKEVLTRRFARLLKEDPDRETEA---------WPDLLLIDGGAGQISAVKEIMDD 505 Query: 486 LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545 L V++ + I +AKG R G E+F+ L DP+LYF+QR+RDEAHRFAI H Sbjct: 506 LGVDD-VPFIGVAKGIDRDQGKEEFYRPGQPVFALKRNDPVLYFVQRMRDEAHRFAIGAH 564 Query: 546 RKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 R +R KA +PLD++ G+G RKR LL FG+ K ++R++ L +++G+S+ +A KIY Sbjct: 565 RAKRSKAVSATPLDDVPGVGAGRKRALLAHFGSAKAVARANLSDLTAVDGVSEGLAQKIY 624 Query: 605 NHFHKNT 611 + FH Sbjct: 625 DFFHDQA 631 >gi|27382581|ref|NP_774110.1| excinuclease ABC subunit C [Bradyrhizobium japonicum USDA 110] gi|81734657|sp|Q89DG9|UVRC_BRAJA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|27355753|dbj|BAC52735.1| excinuclease ABC chain C [Bradyrhizobium japonicum USDA 110] Length = 686 Score = 565 bits (1455), Expect = e-159, Method: Composition-based stats. Identities = 293/611 (47%), Positives = 392/611 (64%), Gaps = 9/611 (1%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVTCT 65 P PGVY+ML+ VLYVGKA N++KR+ +Y S RI MI+ + T T Sbjct: 80 PTSPGVYRMLNANADVLYVGKAKNVKKRLSNYARQSAPQPARILRMIAATVTVEIVSTNT 139 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLEAN+IK+L+PRFN+ LRDDKSFPYILIT H P + KHR + T G YFGPF Sbjct: 140 ETEALLLEANLIKQLRPRFNVQLRDDKSFPYILITGDHWAPQILKHRGAQTRPGRYFGPF 199 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 AS AV +TI +LQR F +RSC DS F R+RPCLL+QI+RC+GPCT EI Y V Sbjct: 200 ASAGAVNRTITALQRAFLIRSCTDSFFESRSRPCLLYQIRRCAGPCTREIDFPGYTTLVR 259 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 EA FLSG +H +K+++A M +A + ++E+A ++RDRLAALS IQ+ Sbjct: 260 EATDFLSGKSHAVKQELAGEMEKAANELEFETAALYRDRLAALSAIQSQQGINPRTVEEA 319 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+++ +C++ FF GQN G +F + + T ++L FL QFY DKP P+N Sbjct: 320 DVFAIHQEGGFSCVEVFFFRTGQNWGNRAYFPRAEKTFTPEEVLGSFLAQFYDDKPPPKN 379 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 ILLS E EE+ LL + + G+K+++T PK+GEK++++ AL NA + +KL+ + Sbjct: 380 ILLSHEIEESELLANALSIKAGHKIEVTAPKRGEKKELVAHALTNAREALGRKLADTATQ 439 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 +L +LPH PKRIE+YDNSHI G +AVG M+V G +GFVKNQYRKFN+ + Sbjct: 440 GRLLDAMATTLSLPHAPKRIEVYDNSHIQGTNAVGAMIVAGPDGFVKNQYRKFNIKSEGL 499 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD MMR VLERRF +LI K ++ FP WPD+VI+DGG+GQL+A + + Sbjct: 500 TPGDDYGMMREVLERRFKRLI---NPPEEGAKVKDDDFPQWPDLVIIDGGRGQLNAVREI 556 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 L + +++++S+AKGP R AG E F+ + EA+ L RDP+LYFIQRLRDEAHRF I Sbjct: 557 FANLGLT-QVSLMSVAKGPDRDAGRETLFMPEREAIKLEPRDPVLYFIQRLRDEAHRFVI 615 Query: 543 TTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 +HRK RKK L EI GIGP RKR LL FGT+K I R+S L + G+S + A Sbjct: 616 GSHRKLRKKDIREAGLQEIPGIGPSRKRALLHHFGTLKEIERASIADLGKVPGVSAESAR 675 Query: 602 KIYNHFHKNTS 612 +I+ +FH Sbjct: 676 RIFEYFHPQPG 686 >gi|292493086|ref|YP_003528525.1| excinuclease ABC, C subunit [Nitrosococcus halophilus Nc4] gi|291581681|gb|ADE16138.1| excinuclease ABC, C subunit [Nitrosococcus halophilus Nc4] Length = 604 Score = 565 bits (1455), Expect = e-159, Method: Composition-based stats. Identities = 230/610 (37%), Positives = 345/610 (56%), Gaps = 22/610 (3%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+MLD G+VLYVGKA NL++R+ SY + ++SQI +I TV Sbjct: 12 LKNLTSRPGVYRMLDAEGKVLYVGKARNLKRRLSSYFRKTGLATKTHRLVSQIFDIEITV 71 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EAL+LE N+IK L+PR+N+LLRDDKS+PYI ++ P L HR + G YF Sbjct: 72 THTENEALILENNLIKALQPRYNVLLRDDKSYPYIFLS-ADDFPRLGFHRGAKRTPGQYF 130 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ SV A+ +T+ LQ F +R C DS +R+R+RPCL +QIKRC+ PC G I E+Y + Sbjct: 131 GPYPSVGAMRQTLRLLQEVFPVRQCEDSFYRNRSRPCLQYQIKRCTAPCVGLIDKERYHQ 190 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242 V A FL G + + +++ M +A+ + +E A +RDR+A+L IQ + Sbjct: 191 DVQHAVMFLEGRDQQVIDELVARMEEASQQLAFEQAAYYRDRIASLRRIQERQYISGKEV 250 Query: 243 DCF--SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D + AC++ F G+N G TF K T ++LS F+ Q+Y ++ P Sbjct: 251 DIDVLGATVKGSTACVEVFFIRGGRNLGNKTFLPKFQGNLTPRELLSAFIPQYYLNREIP 310 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 ++LS + E+ LL +Q G K+ + P +G K + ++ AL NA + + L + Sbjct: 311 PTLVLSHQPEDMELLTEVLSEQAGRKIMLLRPTRGSKIRWVKMALTNAEINLNRCLVKKT 370 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S K + ++P+R+E +D SH G + V VV G YR+FN+ Sbjct: 371 SIVERFKSLQQLLGWTNLPQRLECFDISHTRGEATVASCVVFDREGPNSTDYRRFNIEG- 429 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 V DD A +R L RR+ +L K E PD++++DGGKGQL+ A Sbjct: 430 -VTPGDDYAALRQALTRRYRRLKKGE--------------GILPDLLVIDGGKGQLAQAV 474 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHR 539 VL+++ +E T++ IAKGP+R AG E + + +++ P L+ +Q +RDEAHR Sbjct: 475 TVLREIGIEET-TVLGIAKGPERKAGQETLLLAGRDTPVIVAPDSPALHLLQHIRDEAHR 533 Query: 540 FAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAIT+HRKRR K SPL+ I G+GP R++ LL G ++ ++R+ E LA + GIS Sbjct: 534 FAITSHRKRRIKGHKISPLETIPGLGPKRRQRLLTQLGGLREVARAGVEELARVPGISPG 593 Query: 599 IACKIYNHFH 608 +A +IY+ FH Sbjct: 594 LAQRIYDSFH 603 >gi|258542181|ref|YP_003187614.1| excinuclease ABC subunit C [Acetobacter pasteurianus IFO 3283-01] gi|256633259|dbj|BAH99234.1| excinuclease UvrABC subunit C UvrC [Acetobacter pasteurianus IFO 3283-01] gi|256636318|dbj|BAI02287.1| excinuclease UvrABC subunit C UvrC [Acetobacter pasteurianus IFO 3283-03] gi|256639371|dbj|BAI05333.1| excinuclease UvrABC subunit C UvrC [Acetobacter pasteurianus IFO 3283-07] gi|256642427|dbj|BAI08382.1| excinuclease UvrABC subunit C UvrC [Acetobacter pasteurianus IFO 3283-22] gi|256645482|dbj|BAI11430.1| excinuclease UvrABC subunit C UvrC [Acetobacter pasteurianus IFO 3283-26] gi|256648535|dbj|BAI14476.1| excinuclease UvrABC subunit C UvrC [Acetobacter pasteurianus IFO 3283-32] gi|256651588|dbj|BAI17522.1| excinuclease UvrABC subunit C UvrC [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654579|dbj|BAI20506.1| excinuclease UvrABC subunit C UvrC [Acetobacter pasteurianus IFO 3283-12] Length = 637 Score = 565 bits (1455), Expect = e-158, Method: Composition-based stats. Identities = 276/613 (45%), Positives = 377/613 (61%), Gaps = 15/613 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + + MP PGVY+ML G VLYVGKA L+KR+ SY H N R+ M+S+ + Sbjct: 32 ALKTMPLSPGVYRMLGAKGEVLYVGKALALKKRVTSYTHINRLPERLRRMVSETVAMEIV 91 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T TE EALLLEAN IKR+KPRFNILLRDDKS+P++++TD H P + KHR + S Sbjct: 92 TTHTEAEALLLEANYIKRMKPRFNILLRDDKSYPWLMLTDAHAFPQIAKHRGKAVKGSSL 151 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GPFAS AV +T+N +QR F LRSC D+VF RTRPCLL+QIKRCSGPC I E Y Sbjct: 152 WGPFASAWAVNQTLNLIQRVFLLRSCTDAVFNSRTRPCLLYQIKRCSGPCVDRIDQESYG 211 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 + V +A++FLSG + L+E + + MN A D+E A + RDR+ AL+ +Q + Sbjct: 212 QLVEQAREFLSGKDTALRETLGQEMNAAAEALDFERAAVLRDRIRALAQMQESSVINPAS 271 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D +L+ ACIQ F G+N G+ +FF ++T A +LS F+ QFY DKP Sbjct: 272 LQDADVLALWQEAGHACIQVFFIRGGRNNGSRSFFPAHTQDATPADVLSAFIAQFYDDKP 331 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 CP IL++ E E+ LL + + G KV+I P++GEK+++++ A+ NA + ++KL+ Sbjct: 332 CPAQILVNYELPESLLLTEALSLRRGRKVEILAPQRGEKKQVLDHAVTNARDALSRKLAE 391 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 +L+ L P+RIE+YDNSHI G A G M+V G GF + YRKF + Sbjct: 392 TAGQAKLLQGVADVLGLDAPPERIEVYDNSHIQGSHAYGVMIVGGPEGFNRKAYRKFKIK 451 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 DD MMR VLERRF + +K E + +WPDV+++DGG GQ SA Sbjct: 452 GPVTPG-DDFGMMREVLERRFGRALKEAEEGDT---------SNWPDVLLIDGGAGQYSA 501 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 + VL L V + ++ IAKGP R AG E F+ + E L++RDP+LY++QRLRDEAH Sbjct: 502 VRSVLDDLGVTG-VKLVGIAKGPDRDAGKEWFYTEDKEPFQLDLRDPVLYYLQRLRDEAH 560 Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAITTHR R K S LD++ GIGP RK+LLL +FG+ + I ++ L + GIS+ Sbjct: 561 RFAITTHRSGRSKTLVKSELDDVPGIGPARKKLLLNTFGSARAIKQAGLAELEAAPGISR 620 Query: 598 KIACKIYNHFHKN 610 + A IY HFH + Sbjct: 621 ETARAIYGHFHPD 633 >gi|254487302|ref|ZP_05100507.1| excinuclease ABC, C subunit [Roseobacter sp. GAI101] gi|214044171|gb|EEB84809.1| excinuclease ABC, C subunit [Roseobacter sp. GAI101] Length = 621 Score = 565 bits (1455), Expect = e-158, Method: Composition-based stats. Identities = 261/611 (42%), Positives = 384/611 (62%), Gaps = 14/611 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+MLD RVLYVGKA NL+ R+ +Y S+ H+ RI MIS ++ F Sbjct: 19 LKTIDSSPGVYRMLDSESRVLYVGKARNLRARVSNYARSSGHSGRIARMISNTASMMFLT 78 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N+IK+LKP+FN+LLRDDKSFP IL+T P + KHR + +G+Y+ Sbjct: 79 TKTETEALLLEQNLIKQLKPKFNVLLRDDKSFPNILVTADGDYPQIKKHRGAKKEKGNYY 138 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPFAS AV +T+N LQR F LR C++++F RTRPCL QIKRCS PC G+IS E+Y + Sbjct: 139 GPFASAGAVNRTLNQLQRVFLLRDCSNAMFDSRTRPCLQHQIKRCSAPCVGKISPEEYRK 198 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---Y 239 V +A+KFL+ + +++ ++A +M A+ ++E A RDR+ AL+ +Q Sbjct: 199 TVQDAQKFLNSKSTDIQVRLAADMAAASEAMEFERAAALRDRIKALTQVQTAQGINPQGV 258 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 + D +L+ ++ AC+Q F QN G ++ + + A++L F+ QFY + Sbjct: 259 SEADIIALHLDQGQACVQVFFIRANQNWGNRDYYPRVGPDVDAAEVLEAFIGQFYDTREP 318 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P ++LS E E L+ + + G KV++ VP++GEK ++++ AL NA S +KL+ Sbjct: 319 PRQLILSNEIENPDLMADALSGKLGRKVELLVPQRGEKAELVDGALRNARESLARKLAET 378 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + +LK F LP P+RIE+YDNSHI G +AVG MVV G +G +KNQYRKFN+ Sbjct: 379 ATQTNLLKGLADAFELPASPQRIEVYDNSHIQGTNAVGGMVVAGPDGMMKNQYRKFNIRG 438 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 +++ DD MM+ VL RRF +L+K + + WPD++++DGG GQ+SA Sbjct: 439 DELTPGDDFGMMKEVLTRRFKRLLKED---------PDRKLGMWPDLLLIDGGAGQVSAV 489 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 ++++ VE+ I ++ +AKG R AG E+F + L DP+LYFIQR+RDEAHR Sbjct: 490 ASIMREYGVED-IPMVGVAKGVDRDAGKEEFHRVGKRPMALRHNDPVLYFIQRMRDEAHR 548 Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAI THR +R KA +PLDE+ G+G RKR LL FG+ K + R++ L +++G+S+ Sbjct: 549 FAIGTHRAKRAKAVGATPLDEVPGVGAARKRALLAHFGSAKAVGRANLSDLLAVDGVSRA 608 Query: 599 IACKIYNHFHK 609 +A +IY FH+ Sbjct: 609 LAERIYAFFHE 619 >gi|192361497|ref|YP_001982263.1| excinuclease ABC subunit C [Cellvibrio japonicus Ueda107] gi|190687662|gb|ACE85340.1| excinuclease ABC, C subunit [Cellvibrio japonicus Ueda107] Length = 612 Score = 564 bits (1454), Expect = e-158, Method: Composition-based stats. Identities = 225/610 (36%), Positives = 345/610 (56%), Gaps = 24/610 (3%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 + PGVYQM + G +LYVGKA NL+ R+ SY + + + ++S+I N++ T+T +E Sbjct: 20 QQPGVYQMFNAQGHILYVGKAKNLKARLSSYFRKSGLSPKTQALVSRIANVQVTITPSET 79 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EAL+LE N+IK +P +NILLRDDKS+PYI I+ P + HR + +G Y+GP+ + Sbjct: 80 EALILEQNLIKSNRPPYNILLRDDKSYPYIFISSGEDFPRIATHRGAKKKRGDYYGPYPN 139 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 V AV+ ++N LQ+TF +R C DSVF +RTRPCL +QIKRC+ PC IS ++Y + Sbjct: 140 VGAVKDSLNFLQKTFRVRQCEDSVFNNRTRPCLQYQIKRCTAPCVDYISPDEYQLDLRHT 199 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSL 247 + FLSG N +L ++A M Q+ +E A +RD+++AL +Q+ R D + Sbjct: 200 RMFLSGQNDDLLVELANQMEQSAQSLHFEKAAAYRDQISALRTVQSQQVMEEGRGDIDVI 259 Query: 248 YHNKNLA--CIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY---TDKPCPEN 302 + A C+ F G+ G+ +F+ T T AQ+L+ F+ QFY + P Sbjct: 260 AADMRAAAICVHILFVRQGRILGSRSFYPPTTLAETPAQVLAEFIPQFYLANQGRDIPRE 319 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 I++SE EE LL + + G V I+ + + + ++ A A ++ ++++ S Sbjct: 320 IIVSEPLEEAELLANALQQSVGRVVVISQQVRSHRAQWLQMATTAAQQNLIGHINSKKSS 379 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 + +L P+R+E +D SH G V VV NG +K+ YR+FN+ + Sbjct: 380 LDRFVALQEALSLEETPQRLECFDISHSSGELTVASCVVFDTNGPLKSDYRRFNIEG--I 437 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD A M L RR+++L E PD++++DGGKGQL A V Sbjct: 438 TPGDDYAAMEQALTRRYTRLQNGE--------------GKMPDILLIDGGKGQLGKAIEV 483 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFA 541 L +L V+ + +I +AKG R AG E F GE +VL P L+ IQ +RDE+HRFA Sbjct: 484 LGELGVQG-VQLIGVAKGTTRKAGFETLFDGDTGEEIVLPGDSPALHLIQHIRDESHRFA 542 Query: 542 ITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 IT H++RR KK S L++I G+G R+R LL+ FG ++ + ++S LA + GIS K+A Sbjct: 543 ITGHKQRRDKKRRTSSLEDIPGVGATRRRELLRHFGGLQEVQKASVVELAKVPGISHKLA 602 Query: 601 CKIYNHFHKN 610 +IY+ FH + Sbjct: 603 EEIYSFFHND 612 >gi|126740607|ref|ZP_01756294.1| excinuclease ABC subunit C [Roseobacter sp. SK209-2-6] gi|126718408|gb|EBA15123.1| excinuclease ABC subunit C [Roseobacter sp. SK209-2-6] Length = 622 Score = 564 bits (1454), Expect = e-158, Method: Composition-based stats. Identities = 262/610 (42%), Positives = 381/610 (62%), Gaps = 15/610 (2%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + + PGVY+MLD RVLYVGKA NL+ R+ +Y N + RI MI+ ++ F T Sbjct: 22 KTLDASPGVYRMLDSESRVLYVGKARNLKARVSNYTRPGN-SPRIERMIALTASMMFLTT 80 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLE N+IK+LKP++N+LLRDDKSFP IL+ H+ P + KHR + +GSYFG Sbjct: 81 RTETEALLLEQNLIKQLKPKYNVLLRDDKSFPNILVAKNHRFPQIKKHRGARKEKGSYFG 140 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +T++ LQ+ F LR+C+D++F RTRPCL +QIKRC+ PCTGEIS Y+ Sbjct: 141 PFASAGAVNRTLSQLQKAFLLRNCSDAMFESRTRPCLQYQIKRCTAPCTGEISESDYLLS 200 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--- 240 V +A++FLSG + ++E++A M A+ ++E A RDR+ AL+ +Q+ Sbjct: 201 VRDAERFLSGRSTKIQEELAEEMMAASEAMEFERAAALRDRIKALTQVQSSQGINPRGVA 260 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D L+ + AC+Q F QN G F+ + D++ A+++ FL QFY +K P Sbjct: 261 EADIVGLHMERGQACVQVFFIRANQNWGNQDFYPRVDADMNPAEVMEAFLGQFYDNKEPP 320 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 ++LS+ E L+ + + G +V+I VP +GEK +++ A+ NA S ++++ Sbjct: 321 RQLILSDAIENADLMAEALSGKAGRRVEILVPLRGEKTELVAGAVRNARESLARRMAESA 380 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 + +L+ + F L P+RIE+YDNSHI G +AVG M+V G GF+KN YRKFN+ + Sbjct: 381 TQAKLLRGIAEAFGLEASPQRIEVYDNSHIQGTNAVGAMIVAGPEGFMKNAYRKFNIKGD 440 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 D+ DD MM+ VL RRFS+L K + + WPD++++DGG GQ+SA Sbjct: 441 DLVPGDDFGMMKEVLHRRFSRLKKED---------PDRDKGHWPDLLLIDGGAGQVSAVA 491 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 ++++ VE+ I ++ +AKG R G E+F+ A L DP+LYFIQR+RDEAHRF Sbjct: 492 EIMQEHGVED-IPMVGVAKGVDRDHGKEEFYRPGENAFALQRNDPVLYFIQRMRDEAHRF 550 Query: 541 AITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI THR +R KA +PLDE+ G+G RKR LL FG+ K +SR+ L ++EGIS + Sbjct: 551 AIGTHRAKRAKAIGATPLDEVPGVGASRKRALLAHFGSAKAVSRADLADLKAVEGISSAL 610 Query: 600 ACKIYNHFHK 609 A IY+ FH+ Sbjct: 611 AETIYDFFHE 620 >gi|320159933|ref|YP_004173157.1| uvrABC system protein C [Anaerolinea thermophila UNI-1] gi|319993786|dbj|BAJ62557.1| uvrABC system protein C [Anaerolinea thermophila UNI-1] Length = 620 Score = 564 bits (1453), Expect = e-158, Method: Composition-based stats. Identities = 211/615 (34%), Positives = 325/615 (52%), Gaps = 17/615 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PG Y + AG V+YVGKA NL+ R++SY + + + ++ I +I + V Sbjct: 12 LDNLPTRPGCYIYKNEAGEVIYVGKAVNLRNRVRSYFNESPKDFKTRQLVRHIAHIDWIV 71 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +E+EAL+LE N+IK+ +PR+NI L+DDK +PYI + P + R YF Sbjct: 72 VESELEALILEMNLIKKYRPRYNIRLKDDKRYPYIKVHWAAPFPKVTVTRQMVQDGSRYF 131 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ SV AV +T++ L+R F +C + R CL + IK C+ PC G I +Y Sbjct: 132 GPYTSVWAVHQTLDVLRRIFPYLTCDREITGKDARACLYYDIKLCAAPCIGAIGQAEYRR 191 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242 + + FL G + ++ + M A +E A RD++ A+ I I ++ Sbjct: 192 MIEDLCDFLQGRTEPIVTRLQKEMEDAAEALQFERAAAIRDQIFAIEKIVEKQRVISSKQ 251 Query: 243 ---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-KP 298 D ++ AC+Q F G+ G F L+ E A+I+S F++QFY++ Sbjct: 252 MDSDVIAIARANGEACVQIFFIRSGKLIGREYFILEGTHEEQEAEIVSQFIKQFYSEAAT 311 Query: 299 CPENILLSEEAEETSLLEIS-FFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HT 353 P+ +LL E EE ++E ++ G KV++ VP GE+R+++E A NA + Sbjct: 312 LPDQVLLPHEVEEAQIIEQWLKSRRGGEKVQLVVPGHGEERELVEMATENAIETLAALRA 371 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 Q + Q L + + LP P +IE +D S+ G + V MVV + K YR Sbjct: 372 QWEADTNKQQQALAEIQQALNLPAPPNKIECFDISNTQGTATVASMVVFEQGVPSKKNYR 431 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 FN+ V+ DD A M L RRF + +E K + +F PD++I+DGGK Sbjct: 432 HFNIRS--VQGPDDFASMEEALTRRFKRWQAAQEGQFEPGAKLDPAFTILPDLLIVDGGK 489 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 GQLS A VL+ + ++ ++ +AK + E F ++ E+++L LY +QR+ Sbjct: 490 GQLSRAVKVLESFGLLGKVPVVGLAKQNE-----ELFLPERSESILLPRHSQGLYLLQRI 544 Query: 534 RDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDEAHRFAIT HRK+R K S LD I GIGP R+R LLQ FG+++ I ++S E L + Sbjct: 545 RDEAHRFAITAHRKQRTKQGMASVLDSIPGIGPARRRWLLQHFGSLEAIRQASLEELTAA 604 Query: 593 EGISKKIACKIYNHF 607 GI+K++A KI H Sbjct: 605 PGITKELAQKIKEHL 619 >gi|148253258|ref|YP_001237843.1| excinuclease ABC subunit C [Bradyrhizobium sp. BTAi1] gi|146405431|gb|ABQ33937.1| Excinuclease ABC subunit C [Bradyrhizobium sp. BTAi1] Length = 688 Score = 563 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 295/611 (48%), Positives = 390/611 (63%), Gaps = 7/611 (1%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVTCT 65 P PGVY+ML+ A VLYVGKA N++KR+ SY +N RI MI+ + T T Sbjct: 80 PTSPGVYRMLNAAHDVLYVGKAKNVKKRLSSYARANAPLPARILRMIAATVAVEIVSTTT 139 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLEAN+IK+LKPRFN+ LRDDKSFPYILIT H P + KHR + + G YFGPF Sbjct: 140 ETEALLLEANLIKQLKPRFNVQLRDDKSFPYILITGDHWAPQILKHRGAQSRPGRYFGPF 199 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 AS AV +TI +LQR F +RSC DS F RTRPCLL QI+RC+GPCT EI Y E V Sbjct: 200 ASAGAVNRTITALQRAFLIRSCTDSFFESRTRPCLLHQIRRCAGPCTQEIDFPGYTELVR 259 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 EA FLSG + +K +A M +A+ + ++E+A ++RDRLAALS I + Sbjct: 260 EATDFLSGRSQAVKALLAAEMEKASSELEFETAAVYRDRLAALSAISSQQGINPRTVEEA 319 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+++ C++ FF GQN G +F + + T ++LS FL QFY DKP P Sbjct: 320 DVFAVHQEGGFFCVEVFFFRTGQNWGNRAYFPRAEKTFTPEEVLSAFLSQFYDDKPPPRL 379 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 +LLS E EE LL + + G+KV+++ PK+GEK+ ++ AL NA + +KL+ + Sbjct: 380 VLLSHEIEEAELLAEALCVKAGHKVEVSTPKRGEKKDLVTHALTNAREALGRKLADTATQ 439 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 +L+ T LP IPKRIE+YDNSHI G +AVG M+V G +GF+KNQYRKFN+ + Sbjct: 440 SRLLEAMTTTLGLPQIPKRIEVYDNSHIQGTNAVGAMIVAGPDGFMKNQYRKFNIKSEGL 499 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD AMM+ VL+RRF +L+ E + +E P WPD+VI+DGG+GQL+A + + Sbjct: 500 TPGDDYAMMKEVLQRRFKRLVAPSEK-DVARAAKEDDVPQWPDLVIIDGGRGQLNAVREI 558 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 +L V N + ++S+AKGP R AG E F+ + A+ L RDP+LYFIQRLRDEAHRF I Sbjct: 559 FTELGVTN-VALMSVAKGPDRDAGRETLFIPERAAIKLEPRDPVLYFIQRLRDEAHRFVI 617 Query: 543 TTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 +HRK RKK L EI GIGP RKR LL FGT+K I R+S L + G+S + A Sbjct: 618 GSHRKLRKKDIREAGLQEIPGIGPSRKRALLHHFGTLKEIERASIADLGKVPGVSAESAR 677 Query: 602 KIYNHFHKNTS 612 KI+ +FH + S Sbjct: 678 KIFEYFHSSAS 688 >gi|144899719|emb|CAM76583.1| Excinuclease ABC subunit c [Magnetospirillum gryphiswaldense MSR-1] Length = 631 Score = 563 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 273/609 (44%), Positives = 382/609 (62%), Gaps = 14/609 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+ML+ G VLYVGKA +L+KR+ +Y T RI MI++ + T Sbjct: 31 TLPATPGVYRMLNQRGDVLYVGKAKSLKKRVVAYTKPERQTLRIQRMIAETAFMEVITTH 90 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TEVEALLLE+N+IK L PR+NILL+DDK+FP+IL+T H P + KHR + + +G YFGP Sbjct: 91 TEVEALLLESNLIKTLGPRYNILLKDDKTFPHILLTGDHDWPQVVKHRGARSRRGEYFGP 150 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 FAS AV +T+++LQR F LRSC DSVF RTRPCLLFQIKRCS PC I +YM+ V Sbjct: 151 FASAGAVNQTLSALQRAFLLRSCTDSVFSSRTRPCLLFQIKRCSAPCVDRIDHAEYMDLV 210 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241 +A+ FLSG + ++ +A+ M + +YE A ++RDR+ ALS IQ H D Sbjct: 211 AQARAFLSGQSQAIQRDLAKRMEASAEAMEYEQAAVYRDRIRALSRIQAHQDINPADVAE 270 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D +L+ C+Q FF G N G +F + +E+ +++++ FL QFY DK P Sbjct: 271 ADVVALHQAGGQTCVQVFFFRSGCNYGNRAYFPQHAAEAEASEVMAAFLGQFYADKQPPR 330 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 ILLS+E E ++ + + G KV ++VPK+G+++++IE A NA + ++++ + Sbjct: 331 EILLSQEPAEAEIVAAALSAKAGRKVIVSVPKRGDRKRLIEHAYDNAREALGRRMAESSA 390 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 +L + F L P RIE+YDNSHI G +AVG M+V G +G +K YRKFN+ + Sbjct: 391 QGTLLDGVAELFGLDARPNRIEVYDNSHIQGTNAVGGMIVAGPDGLMKAAYRKFNIRSTE 450 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 + DD AMMR VL RRF + K + + WPD+V++DGG GQL+A Sbjct: 451 LTPGDDFAMMREVLTRRFQRAQKED---------PDRDRGQWPDLVLIDGGLGQLNATVE 501 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 VL L +++ + ++SIAKGP R+AG E+FF+ E L M+DP+LYF+QRLRDEAHRFA Sbjct: 502 VLADLGIDD-VALVSIAKGPDRNAGRERFFMPGKEPFSLPMKDPVLYFLQRLRDEAHRFA 560 Query: 542 ITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 I HR RR SPLDEI+GIG RK+ LL FG+ + + + L ++ GISK +A Sbjct: 561 IGAHRTRRAGDMVRSPLDEIDGIGAARKKALLHHFGSAREAAAAGLADLEAVPGISKSMA 620 Query: 601 CKIYNHFHK 609 KIY+HFH Sbjct: 621 KKIYDHFHP 629 >gi|307294418|ref|ZP_07574262.1| excinuclease ABC, C subunit [Sphingobium chlorophenolicum L-1] gi|306880569|gb|EFN11786.1| excinuclease ABC, C subunit [Sphingobium chlorophenolicum L-1] Length = 637 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 260/611 (42%), Positives = 372/611 (60%), Gaps = 16/611 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PGVY+M D G VLYVGKA L+ R+ +Y + R+ M++Q ++ Sbjct: 37 LKTLPTRPGVYRMQDARGDVLYVGKARALRNRVTNYTQVDRLPRRLQRMVAQTRSMTIVT 96 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EALLLEA +IKR +P +N+LLRDDKSFP+IL+ + H P + KHR + +G Y+ Sbjct: 97 TNSEAEALLLEAQLIKRFRPPYNVLLRDDKSFPFILLREDHAFPRVQKHRGARKYKGRYY 156 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPFAS +V +TIN+LQ+ F LRSC DS F +R+RPCLL+QI+RCS PC G I Y E Sbjct: 157 GPFASAGSVTRTINALQKLFLLRSCTDSFFANRSRPCLLYQIRRCSAPCVGRIDDAHYAE 216 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---Y 239 V +A+ FL G + +++K+ M A+ D+E A + RDRL AL+ IQ Sbjct: 217 LVQDAQDFLGGKSTAVQKKLGEAMQAASDAMDFEQAAVLRDRLKALTFIQGSQAINAEGL 276 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 D F+L CIQ F GQN G +FF +E ++LS F+ QFY + P Sbjct: 277 GDADIFALATRGGAMCIQAFFIRGGQNWGHRSFFPVHTAEVAEDEVLSSFMAQFYEEVPP 336 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P+ IL E L+ + ++ G KV+I VP++G++ ++I+QA NA + ++L+ Sbjct: 337 PKLILSDRAPAECELMAQALTERIGSKVRIEVPQRGDRTRLIKQAQRNAVEALDRRLAET 396 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + IL++ + F L +P RIEIYDNSHI G A+G MVV G GF KN YRKFN+ Sbjct: 397 TTQAKILEEMVETFGLDGVPDRIEIYDNSHIQGAHALGAMVVAGPEGFRKNAYRKFNMK- 455 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 N + DD AMMR + ERRF + + + + WPD+V++DGGKGQLSAA Sbjct: 456 NPETSNDDFAMMREMFERRFGRAARED---------PDRDSGEWPDLVLIDGGKGQLSAA 506 Query: 480 QGVLKKLNVENRITIISIAKGPKR-SAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 + +L+ + +E+ + +I IAKGP G E F + G ++L + P+L+++QRLRDEAH Sbjct: 507 RAILEDMGIED-VCMIGIAKGPHHGREGREVFHMPDGREIMLPLNHPVLFYLQRLRDEAH 565 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAI HR++R KA S LDE+ GIGP RK+ LL FGT + + ++ E L G+SK Sbjct: 566 RFAIGAHRQKRSKAITVSSLDEVPGIGPSRKKALLMHFGTARAVKSAALEDLLKAPGVSK 625 Query: 598 KIACKIYNHFH 608 +A +IY++FH Sbjct: 626 AVAQQIYDYFH 636 >gi|327480699|gb|AEA84009.1| excinuclease ABC subunit C [Pseudomonas stutzeri DSM 4166] Length = 607 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 213/609 (34%), Positives = 332/609 (54%), Gaps = 25/609 (4%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+M D ++LYVGKA NL+KR+ SY + ++++I + T+T E E Sbjct: 17 RPGVYRMFDAQAKLLYVGKAKNLKKRLASYFRKTGQAPKTAALVAKIAQVETTITANETE 76 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE +IK+ +P +NILLRDDKS+PY+ ++ P L HR + G YFGP+ S Sbjct: 77 ALLLEQTLIKQWRPPYNILLRDDKSYPYVFLSAGE-FPRLSIHRGAKKEPGRYFGPYPSA 135 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 A+ ++++ LQ+ FF+R C DS FR+RTRPCL +QIKRC PC + ++Y E V + Sbjct: 136 GAIRESLSLLQKAFFVRQCEDSYFRNRTRPCLQYQIKRCKAPCVKLVDPQEYAEDVRHSV 195 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246 FL G ++ L E+++RNM +A + D+E A RD++ L +Q+ +D + Sbjct: 196 MFLEGRSNALAEELSRNMEKAAMNLDFERAAEIRDQIGILRRVQDQQSMEGGSGNVDIVA 255 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENI 303 + AC+ G+ G+ FF + E + +++L FL Q+Y ++ P + Sbjct: 256 AVVSPGGACVHLITVRGGRVLGSKNFFPQVAIEESVSEVLQAFLEQYYLGATERDLPSEL 315 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 +++ E+ + L + + G ++ IT + + + + AL NA ++ +L+ Sbjct: 316 IVNAVHEDFATLIDAISELRGVELNITHRVRATRARWQQLALTNAEQALGARLANRQHLS 375 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 + + L P R+E +D SH G + V VV G G +K+ YR++N+ V Sbjct: 376 ARFEALAEALELDEPPMRLECFDISHSSGEATVASCVVFGPEGPLKSDYRRYNIEG--VT 433 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD A M L RRF + + E L PD++++DGGKGQL+ A+ VL Sbjct: 434 AGDDYAAMHQALSRRFRKAAEGEGKL--------------PDILLVDGGKGQLNMAREVL 479 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542 ++L V I ++ +AKG R G+E ++ L P L+ IQ++RDEAHRFAI Sbjct: 480 EELAVPELI-LLGVAKGVTRKPGLETLYLNDAAHEFTLPADSPALHLIQQVRDEAHRFAI 538 Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR KA S L+++ GIGP R+R LL FG ++ + R+S + +A GISKK+A Sbjct: 539 TGHRARRGKARRTSTLEDVPGIGPKRRRELLTHFGGLQELCRASLDEIAKAPGISKKLAE 598 Query: 602 KIYNHFHKN 610 IY H Sbjct: 599 SIYAALHSE 607 >gi|253996148|ref|YP_003048212.1| excinuclease ABC subunit C [Methylotenera mobilis JLW8] gi|253982827|gb|ACT47685.1| excinuclease ABC, C subunit [Methylotenera mobilis JLW8] Length = 599 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 225/611 (36%), Positives = 328/611 (53%), Gaps = 24/611 (3%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PGVY+M++ + V+YVGKA +L+KR+ SY + N + R M+S I I TV Sbjct: 8 LKNLPNLPGVYRMINASDEVIYVGKAKDLKKRVSSYFNKNLPSPRTRMMVSNIARIETTV 67 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EALLLE N+IK L PR+N+L RDDKS+PYI +T L HR + YF Sbjct: 68 TRSEAEALLLENNLIKGLMPRYNVLFRDDKSYPYITLTGDE-YSRLAFHRGAQRKGNQYF 126 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF + AV ++I LQ+ F LR+C ++VF +R+RPCL QI RC+ PC IS+E Y Sbjct: 127 GPFPNSVAVRESIQLLQKVFKLRTCENTVFANRSRPCLQHQIARCTAPCVNFISAEDYRN 186 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IY 239 VH+A FL G + + IA M+ A K+ YE A + RDR+ AL +Q Sbjct: 187 DVHQAAMFLQGKTTEVIDSIAEQMSAAAAKQSYELAAVFRDRIQALHQVQAKQFVSDFNI 246 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 + D + + CI G++ G ++ K T + FL Q Y + Sbjct: 247 SDADVIASAELQGQHCINLVMIRGGRHLGDRSYMPKNTDGETLETTVQAFLAQHYVAQNT 306 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P I++ + E L E +Q G KVKI G+KR + A NA + Q+ +T Sbjct: 307 PPLIVVGVKIET-ELFEEVLSEQAGRKVKINTNPIGDKRVWLRMAQTNAELALGQRAATT 365 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + + L + LP +R+E +D SH MG + V VV ++YR++N+ Sbjct: 366 ANQEAKLLALREALRLPDSTERMECFDISHTMGEATVASCVVFDRGDMQNSEYRRYNI-- 423 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A MR VL RR+ ++ E PD+V +DGGKGQL A Sbjct: 424 TGITPGDDYAAMRDVLTRRYKKVAAGE--------------GKRPDLVFIDGGKGQLGVA 469 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQRLRDEAH 538 V+ ++ +++ I +I IAKG +R G+E F GE + L + L+ +Q++RDEAH Sbjct: 470 MEVMAEVGLDD-ILLIGIAKGEERKPGLETMIFSDTGEMVNLEKDNKGLHLLQQIRDEAH 528 Query: 539 RFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR +R KA S L++I G+G R++ LL FG + + +S + LAS+EGIS+ Sbjct: 529 RFAITGHRAKRAKARLQSSLEDIEGVGAKRRKALLTRFGGLDGVKNASIDELASVEGISQ 588 Query: 598 KIACKIYNHFH 608 +A KIY H Sbjct: 589 SLAEKIYGELH 599 >gi|92118613|ref|YP_578342.1| excinuclease ABC subunit C [Nitrobacter hamburgensis X14] gi|119367677|sp|Q1QIR5|UVRC_NITHX RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|91801507|gb|ABE63882.1| Excinuclease ABC subunit C [Nitrobacter hamburgensis X14] Length = 690 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 288/607 (47%), Positives = 390/607 (64%), Gaps = 6/607 (0%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 P PGVY+M++ A VLYVGKA N++KR+ SY RI MI+ + I T TE Sbjct: 81 PTSPGVYRMMNAARDVLYVGKAKNVRKRLSSYARPTGQVMRIARMIAATSTIEIVSTETE 140 Query: 67 VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126 EALLLEAN+IK+L+PRFN+ LRDDKSFPYILIT H P + KHR + + G YFGPFA Sbjct: 141 TEALLLEANLIKQLRPRFNVQLRDDKSFPYILITGDHWAPQILKHRGAQSRPGRYFGPFA 200 Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186 S AV +TI +LQR F +RSC DS F RTRPCLL+QIKRC+GPCTGEI Y V E Sbjct: 201 SAGAVGRTITALQRAFLVRSCTDSFFEGRTRPCLLYQIKRCAGPCTGEIDFPGYTALVRE 260 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMD 243 A FLSG + +KE++AR M +A+ +E A ++RDRLAALS IQ+ D Sbjct: 261 ATDFLSGRSRAVKEELAREMEKASGDLAFERAALYRDRLAALSAIQSQQGINPRTVEEAD 320 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303 F+++ +C++ FF GQN G +F + + T ++L FL QFY DKP P+ I Sbjct: 321 VFAIHQEGGYSCVEVFFFRTGQNWGNRAYFPRAEKSFTPEEVLGAFLAQFYDDKPPPKVI 380 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 LLS EE+ LL + + G+KV + +P++GEK++++ AL NA + +KL+ + Sbjct: 381 LLSHRIEESELLADALSIKAGHKVGVLMPQRGEKKELVAHALTNAREALGRKLADTATQS 440 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 +L+ LPH P+RIE+YDNSHI G +AVG M+V G G +KNQYRKFN+ ++ Sbjct: 441 RLLQGLATVLGLPHAPRRIEVYDNSHIQGTNAVGAMIVAGPEGLLKNQYRKFNIRSENLT 500 Query: 424 TQDDCAMMRMVLERRFSQLIKNE-ENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD AMMR VLERRF +L+ + + + + ++ + P WPD+VI+DGG GQL+A +G+ Sbjct: 501 PGDDYAMMREVLERRFKRLLTQKAADPDKADEPEKDAVPQWPDLVIIDGGLGQLNAVRGI 560 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 L + +++++++AKGP R AG E F+ A+ L RDP+LYFIQRLRDEAHRF I Sbjct: 561 FDALGLS-QVSLMAVAKGPDRDAGRETLFLPDRPAIKLEPRDPVLYFIQRLRDEAHRFVI 619 Query: 543 TTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 +HRK R+K L E+ GIGP RKR LL FGT+K I R+S L + GIS + A Sbjct: 620 GSHRKLRRKDIREAGLQEVPGIGPARKRALLHHFGTLKEIERASVADLGKVPGISAESAR 679 Query: 602 KIYNHFH 608 KI++ FH Sbjct: 680 KIFDFFH 686 >gi|34496760|ref|NP_900975.1| excinuclease ABC subunit C [Chromobacterium violaceum ATCC 12472] gi|81656372|sp|Q7NYG9|UVRC_CHRVO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|34102615|gb|AAQ58980.1| excinuclease ABC subunit C [Chromobacterium violaceum ATCC 12472] Length = 601 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 228/612 (37%), Positives = 327/612 (53%), Gaps = 28/612 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PGVY+MLD AG+VLYVGKA +L++R+ SY N+ + RI M+ QI +I TV Sbjct: 12 LQNLPTLPGVYRMLDAAGKVLYVGKAIDLKRRVSSYFQKNDLSPRIQLMVRQIASIETTV 71 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N+IK L PR+NIL RDDKS+PY++ + H P + +R YF Sbjct: 72 TRSEAEALILENNLIKALAPRYNILFRDDKSYPYLMFS-GHAFPQMAYYRGEPKKPNQYF 130 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + AV ++I LQ+ F LR+C D+VF +R+RPCLL+QIKRCSGPC IS E+Y Sbjct: 131 GPYPNGYAVRESIQILQKVFRLRTCEDAVFANRSRPCLLYQIKRCSGPCVDHISKEEYAA 190 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR- 241 V A FL+G L ++ R M A +E A RD++ AL+ +Q N+ Sbjct: 191 DVASAVAFLNGRQSELINELTRRMTAAAEAMAFEQAAELRDQIQALARVQEKQFVASNQS 250 Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D + + C+ G++ G + F T +IL F+ Q Y Sbjct: 251 QQDCDVVAARVRDGVPCVNLVMIRGGRHLGDKSHFPIGGEADTEQEILEAFIGQHYQHAG 310 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P ++++ + L+ ++ G KV I GE+R +E A NA + Q+L + Sbjct: 311 VPAALVVNGVVD--DALQQFLQERAGRKVYIVGNPIGERRVWLEMAEKNAELAILQRLGS 368 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + + L + L R E +D SH MG + V VV + +YR+FN+ Sbjct: 369 KATQAQRLAQLNEVLELEDAG-RFECFDISHTMGEATVASCVVYDKGAMQPTEYRRFNIT 427 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 DD A MR VL RR+ +L + E PD V +DGGKGQ+ Sbjct: 428 TA--APGDDYAAMREVLSRRYGKLAEGE--------------GRLPDAVFIDGGKGQVGV 471 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYFIQRLRDEA 537 A VL +L + + I+ IAKG +R G+E + L L P L+ IQ +RDEA Sbjct: 472 ALEVLGELGL--NLPIVGIAKGEERKPGLETLILPYLEKTLQLRQDHPALHLIQTVRDEA 529 Query: 538 HRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR RR KA S L++I GIG R++ LL FG ++ ++ +S + LA +EGIS Sbjct: 530 HRFAITGHRARRAKARTSSTLEDIPGIGAKRRQQLLTRFGGLRGVATASVDDLAQVEGIS 589 Query: 597 KKIACKIYNHFH 608 + +A KIYN H Sbjct: 590 RTLAEKIYNALH 601 >gi|294012246|ref|YP_003545706.1| excinuclease ABC subunit C [Sphingobium japonicum UT26S] gi|292675576|dbj|BAI97094.1| excinuclease ABC subunit C [Sphingobium japonicum UT26S] Length = 637 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 260/611 (42%), Positives = 371/611 (60%), Gaps = 16/611 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PGVY+M D G VLYVGKA L+ R+ SY + R+ M++Q ++ Sbjct: 37 LKALPTRPGVYRMQDARGDVLYVGKARALRNRVTSYTQVDRLPKRLQRMVAQTRSMTIVT 96 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EALLLEA +IKR +P +N+LLRDDKSFP+IL+ + H P + KHR + +G Y+ Sbjct: 97 TNSEAEALLLEAQLIKRFRPPYNVLLRDDKSFPFILLREDHDFPRVQKHRGARKYKGRYY 156 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPFAS +V +TIN+LQ+ F LRSC DS F +R+RPCLL+QI+RCS PC G I Y E Sbjct: 157 GPFASAGSVTRTINALQKLFLLRSCTDSFFANRSRPCLLYQIRRCSAPCVGRIDDAAYGE 216 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---Y 239 V +A+ FL G + +++K+ M A+ D+E A + RDRL AL+ IQ Sbjct: 217 LVKDAQDFLGGKSTAVQKKLGEAMQAASDAMDFEQAAVLRDRLKALTFIQGSQAINAEGL 276 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 D F+L CIQ F GQN G +FF +E ++L+ F+ QFY + P Sbjct: 277 GDADIFALAARGGAMCIQAFFIRGGQNWGHRSFFPVHTAEVAEDEVLASFMAQFYEEVPP 336 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P+ IL E L+ + ++ G +V+I VPK+GE+ ++I+QA NA + ++L+ Sbjct: 337 PKLILADRAPAECELMAQALTERIGSRVRIEVPKRGERTRLIKQAQRNAVEALDRRLAET 396 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + +L++ + F L +P RIEIYDNSHI G A+G MVV G GF KN YRKFN+ Sbjct: 397 TTQAKVLEEMVEAFGLEGVPDRIEIYDNSHIQGSHALGAMVVAGPEGFRKNAYRKFNMK- 455 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 N +QDD AMMR + ERRF + + + + WPD+V++DGGKGQLSAA Sbjct: 456 NPATSQDDFAMMREMFERRFGRAARED---------PDRDSGEWPDLVLIDGGKGQLSAA 506 Query: 480 QGVLKKLNVENRITIISIAKGPKR-SAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 + +L+ + +E+ + +I IAKGP G E F + G + + P+L+++QRLRDEAH Sbjct: 507 RAILEDMGIED-VCMIGIAKGPHHGREGREVFHMPDGREISFPLNHPVLFYLQRLRDEAH 565 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAI HR++R KA S LDE+ GIGP RK+ LL FGT K + ++ E L G+SK Sbjct: 566 RFAIGAHRQKRSKAITVSSLDEVPGIGPSRKKALLMHFGTAKAVKSAALEDLLKAPGVSK 625 Query: 598 KIACKIYNHFH 608 +A ++Y++FH Sbjct: 626 AVAQQVYDYFH 636 >gi|99082360|ref|YP_614514.1| excinuclease ABC subunit C [Ruegeria sp. TM1040] gi|119367839|sp|Q1GDL4|UVRC_SILST RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|99038640|gb|ABF65252.1| Excinuclease ABC subunit C [Ruegeria sp. TM1040] Length = 635 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 259/610 (42%), Positives = 383/610 (62%), Gaps = 15/610 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+MLD RVLYVGKA NL+ R+ +Y HT RI MISQ + + F Sbjct: 35 LKTLDSSPGVYRMLDHESRVLYVGKARNLRARVSNYTRP-GHTQRIETMISQTSRMMFLT 93 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N+IK+LKP++N+LLRDDKSFPYI+++ H P L KHR + + S+F Sbjct: 94 TRTETEALLLEQNLIKQLKPKYNVLLRDDKSFPYIMVSKNHAFPQLKKHRGARKGKASFF 153 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPFAS AV +T+N LQ+ F LR+C D++F +RTRPCL +QIKRCSGPC G+IS Y + Sbjct: 154 GPFASAGAVNRTLNQLQKAFLLRNCTDTMFENRTRPCLQYQIKRCSGPCVGKISQADYAD 213 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---Y 239 V +A++FL+G + ++E++ M A+ +YE A RDR+ AL+ +Q+ Sbjct: 214 SVRDAERFLAGRSTKIQEELGAEMQAASEAMEYERAAALRDRIKALTQVQSAQGINPRGV 273 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 + D L+ LAC+Q F QN G F+ + + + A+++ F+ QFY +K Sbjct: 274 SEADIIGLHLENGLACVQVFFIRANQNWGNQDFYPRVAEDMSAAEVMEAFIGQFYDNKDV 333 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P ++LS++ E L+ ++ ++ KV+I VP++GEK +++ A+ NA S +++S Sbjct: 334 PRQLILSDDIENADLMAVALSEKARRKVEIVVPQRGEKTELVASAVRNARESLARRMSES 393 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + +L+ F L P RIE+YDNSHI G +AVG M+V+G GF+KN YRKFN+ Sbjct: 394 ATQAKLLRGIADAFGLEAPPNRIEVYDNSHIQGTNAVGGMIVMGPEGFMKNAYRKFNIKD 453 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 +V DD MM+ VL RRFS+L+K + + WPD++++DGG GQ+SA Sbjct: 454 GEVIAGDDFGMMKAVLNRRFSRLLKED---------PDRQKGMWPDLLLIDGGAGQVSAV 504 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 ++++ V++ I ++ +AKG R G E+F+ A L DP+LYFIQR+RDEAHR Sbjct: 505 AEIMEEHGVQD-IPMVGVAKGVDRDHGKEEFYRPGENAFALQRNDPVLYFIQRMRDEAHR 563 Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAI THR +R K+ +PLD+I G+G RK+ LL FG+ K +SR++ L +++G+S Sbjct: 564 FAIGTHRAKRAKSLVANPLDDIPGVGARRKKALLTHFGSAKAVSRANLSDLKAVDGVSDA 623 Query: 599 IACKIYNHFH 608 +A IYN+F Sbjct: 624 LAETIYNYFQ 633 >gi|254514446|ref|ZP_05126507.1| excinuclease ABC, C subunit [gamma proteobacterium NOR5-3] gi|219676689|gb|EED33054.1| excinuclease ABC, C subunit [gamma proteobacterium NOR5-3] Length = 615 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 222/610 (36%), Positives = 336/610 (55%), Gaps = 23/610 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + GVYQM D G +LYVGKA NL+ R+ SY ++ + ++ +I +I+ TVT Sbjct: 19 TLTTRCGVYQMYDGEGELLYVGKARNLKNRVSSYFRNSGLNAKTVALVMRIRDIQVTVTS 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE N+IK KP +NILLRDDKS+PYI ++ + + P L HR +G YFGP Sbjct: 79 TEADALLLEHNLIKTHKPPYNILLRDDKSYPYIFLSSEDRFPRLTVHRGRKRKKGRYFGP 138 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + S AV ++++ LQ+ F +R C DS FR+R+RPCL QI RC+ PC +S+++Y E V Sbjct: 139 YPSAGAVRQSMHFLQKVFKVRQCEDSYFRNRSRPCLQHQIDRCTAPCVDLVSAQEYAEQV 198 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRM 242 + + FL G + L+ ++A +M +A + YE A + RD++ L +QN + + Sbjct: 199 EKTELFLLGKSRELQIRLADDMEKAAAELAYEKAALLRDQIQHLQQVQNTQGIEGGHGDL 258 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--DKPCP 300 D + C+Q F + G+ +F+ K EST A++L FL QFY + P Sbjct: 259 DVVAASMEGGRCCLQVLFVRDARVLGSKSFYPKLRLESTEAEVLEAFLPQFYLSGQQRIP 318 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 +LLS + + L F + G KV + + + + ++ A+ A + L+ + Sbjct: 319 PEVLLSHSPDNAATLSEVFSGRAGRKVVLRERVREARARWLQLAVQTAQTNLIAHLAGKQ 378 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 + Q L+ + + P+RIE +D SH G + V VV +G K+ YR+FN+ Sbjct: 379 TTQERLQLLQETLEMEVHPQRIECFDISHSSGEATVASCVVFDASGARKSDYRRFNI--E 436 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 +++ DD A M L RRF +L + PD++++DGGKGQ++ A Sbjct: 437 NIEGGDDYAAMHQALTRRFRRLRDEG--------------ATVPDILLIDGGKGQVTQAL 482 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHR 539 VL+ L+V+ I ++ +AKG R AG E + G L L +P L+ IQ++RDEAHR Sbjct: 483 SVLEDLDVKG-IEVVGVAKGTTRKAGFETLILGDSGRELQLPSDNPALHLIQQIRDEAHR 541 Query: 540 FAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAIT HR RR K S L+ I G+G R+R LL+ FG+ + +S E L I GIS Sbjct: 542 FAITGHRNRRDKQRRQSSLESIAGVGAKRRRELLRHFGSAGAVENASVEELRKIPGISAN 601 Query: 599 IACKIYNHFH 608 IA IY+H H Sbjct: 602 IAQTIYDHLH 611 >gi|84499782|ref|ZP_00998070.1| excinuclease ABC subunit C [Oceanicola batsensis HTCC2597] gi|84392926|gb|EAQ05137.1| excinuclease ABC subunit C [Oceanicola batsensis HTCC2597] Length = 630 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 272/611 (44%), Positives = 379/611 (62%), Gaps = 17/611 (2%) Query: 6 MPE---CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 +P PGVY+MLD RVLYVGKA NL+ R+ +Y + H+ RIT MI + ++ F Sbjct: 28 LPTLDSSPGVYRMLDADSRVLYVGKARNLRARVSNYARPSGHSGRITRMIRETASMMFLT 87 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N+IK+LKPR+N+LLRDDKSFP IL+T H + KHR + +GSY+ Sbjct: 88 TRTETEALLLEQNLIKQLKPRYNVLLRDDKSFPNILVTKDHDFAQIVKHRGAKKRKGSYY 147 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPFA AV +T+N LQ+ F LR+C+DS+F RTRPCLL+QIKRCS PCTGEIS Y Sbjct: 148 GPFAGAGAVNRTLNQLQKVFLLRNCSDSMFAGRTRPCLLYQIKRCSAPCTGEISKADYAA 207 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242 V +A++FL G + ++E + M A+ ++E A RDR+ AL+ +Q+ Sbjct: 208 SVADAERFLQGRSTQVQETLGAEMAAASEAMEFERAAALRDRIRALTQVQSAQGVNPRTT 267 Query: 243 ---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 D +L+ AC+Q F QN G F+ + +E + A++L FL QFY K Sbjct: 268 PEADVIALHMEGGQACVQVFFIRANQNWGNRDFYPRAGAEVSEAEVLEAFLGQFYDTKDP 327 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 ILLS E L+E + + G KV++ VP++GEK +++E A NA S +K+S Sbjct: 328 ARLILLSHPIENADLMEQALGDKLGRKVEVAVPQRGEKAELVENAARNARESLGRKMSES 387 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + +L + F L +P+RIE+YDNSHIMG +AVG M+V G +GF+K+QYRKFN+ Sbjct: 388 ATQARLLAGVQEAFGLERVPQRIEVYDNSHIMGTNAVGAMIVAGPDGFMKSQYRKFNIKG 447 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 +D+ DD MM+ VL RR ++L+K + + + WPD++++DGG GQ+SA Sbjct: 448 DDLTPGDDFGMMKEVLTRRLTRLLKED---------PDGTNGLWPDLLLIDGGAGQVSAV 498 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 Q +L+++ V + + +AKG R G E+F L M DP+LYFIQRLRDEAHR Sbjct: 499 QSILEEMGV-GDLPMAGVAKGVDRDHGKEEFHRPGRSPFALRMNDPVLYFIQRLRDEAHR 557 Query: 540 FAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAI THR +R KA +PLDEI G+G RKR LL FG+ K +SR+ L +++GIS Sbjct: 558 FAIGTHRAKRAKAVSATPLDEIPGVGATRKRALLAHFGSAKAVSRAGLSDLKAVDGISDA 617 Query: 599 IACKIYNHFHK 609 +A IY HFH+ Sbjct: 618 MAETIYAHFHE 628 >gi|319898743|ref|YP_004158836.1| excinuclease ABC subunit C [Bartonella clarridgeiae 73] gi|319402707|emb|CBI76254.1| excinuclease ABC subunit C [Bartonella clarridgeiae 73] Length = 643 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 305/611 (49%), Positives = 421/611 (68%), Gaps = 5/611 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +P PGVY+ML+ G +LYVGKA NL+KR+ +Y H +RITHMI + N++ F VT Sbjct: 32 KNLPHKPGVYRMLNENGDILYVGKAQNLKKRVSNYTREQGHNNRITHMIRETNHMEFVVT 91 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL PRFN+LLRDDK+FPYI+ITD H+ PALYKHR + T + YFG Sbjct: 92 DTETEALLLEANLIKRLHPRFNVLLRDDKTFPYIIITDDHRAPALYKHRGARTRKAHYFG 151 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS +AV +TIN LQR F LR+C DSV + TRPCLL+QIKRCS PCT EIS Y++ Sbjct: 152 PFASSEAVTQTINVLQRAFLLRTCTDSVLENCTRPCLLYQIKRCSAPCTYEISDSDYLQL 211 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V +AK FLSG + ++K + + M++A D+E AI +RDRL+ALSHIQ+H Sbjct: 212 VKKAKAFLSGKSQSVKNDMIQAMHKAAENLDFEQAIAYRDRLSALSHIQSHQSINPQIVK 271 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F++ + + CIQ FF GQN G ++F K D ++A+IL+ FL QFY +KP P Sbjct: 272 EADVFAIAQQEGMTCIQVFFFRMGQNWGNQSYFPKADPSFSSAEILASFLTQFYDNKPIP 331 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + ILLS+ EE +LL + + +K+ +++PK+GE++ ++ A NA+ + +KL Sbjct: 332 KLILLSDTIEEKALLTEALSLKANHKISLSLPKKGERKALVNHAYTNAYEALKRKLFETS 391 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 +H+ +L+ + F L H P+RIE+YDNSHI G +AVG M+V + GFVKNQYRKFN+ Sbjct: 392 THKKLLQSIVETFQLSHTPRRIEVYDNSHITGTNAVGVMIVFDQTGFVKNQYRKFNIRST 451 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPK-KQEYSFPSWPDVVILDGGKGQLSAA 479 ++K DD MM+ V+ERRF LIK N + E S P WPD++++DGG+GQ++ Sbjct: 452 NIKPGDDLGMMKEVIERRFLCLIKTYGLPNKNKNIGYESSCPLWPDLILIDGGQGQINIT 511 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 VL +L +++ +T+I IAKG R AG+E+FF+K + L+ DPILYF+QRLRDEAHR Sbjct: 512 STVLSELGLDDFVTVIGIAKGVDRKAGLERFFIKGKQPFTLSPHDPILYFLQRLRDEAHR 571 Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FA+ TH+ +RKK +PLDEI IGP+RKR LL FG+ K +SR+S E L ++GIS Sbjct: 572 FAVGTHKAKRKKETFKNPLDEIEKIGPIRKRALLNYFGSSKAVSRASVEDLKKVQGISNA 631 Query: 599 IACKIYNHFHK 609 IA KI+N+F++ Sbjct: 632 IAQKIHNYFNE 642 >gi|315121799|ref|YP_004062288.1| excinuclease ABC subunit C [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495201|gb|ADR51800.1| excinuclease ABC subunit C [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 615 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 497/614 (80%), Positives = 557/614 (90%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 S+Q+PE PGVYQMLD AG+VLYVGKAYNLQKR+KSY NNHTHRI MI+Q N+ FT Sbjct: 2 SKQIPESPGVYQMLDAAGKVLYVGKAYNLQKRVKSYTQLNNHTHRIMCMINQTRNLNFTT 61 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TEVEALLLEA+MIKRLKPRFNILLRDDKSFPYI+ITD+HKIP+LYKHR ++GSYF Sbjct: 62 TRTEVEALLLEASMIKRLKPRFNILLRDDKSFPYIIITDEHKIPSLYKHRGPPVMKGSYF 121 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPFASVDAVEKTINSLQR FFLRSC+D++F RTRPCLLFQIKRCSGPCTGEIS+EKYME Sbjct: 122 GPFASVDAVEKTINSLQRAFFLRSCSDNIFGCRTRPCLLFQIKRCSGPCTGEISAEKYME 181 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242 FV+EAK FLSG NH+LK KIA+ MN+ATL+EDYESAIIHRDRL ALSHIQNH++SI M Sbjct: 182 FVYEAKDFLSGRNHDLKRKIAQKMNKATLEEDYESAIIHRDRLVALSHIQNHSESINETM 241 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 DCFSLYH+KN+ACIQT FF FGQNRG+ TFFLKTD +STNAQI SYFLRQFY DKPCPE+ Sbjct: 242 DCFSLYHDKNIACIQTFFFRFGQNRGSYTFFLKTDPQSTNAQIFSYFLRQFYEDKPCPES 301 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 ILLSE+AEE+ LLEISF ++YG+KVKIT+PKQGEK+KIIEQALINA SH QK++ EISH Sbjct: 302 ILLSEKAEESQLLEISFCEKYGHKVKITIPKQGEKKKIIEQALINARNSHAQKIALEISH 361 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 Q ++KDF +KFALP+IPKRIEIYDNSH+MGCSAVGCMVV GE+G +KNQYRKFNLHP+DV Sbjct: 362 QAMIKDFAEKFALPYIPKRIEIYDNSHVMGCSAVGCMVVAGESGLIKNQYRKFNLHPDDV 421 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 KTQDDCAMMR+VLERRFSQLIKNEEN NF PKKQEYSFPSWPDVVILDGG+GQLSAAQ V Sbjct: 422 KTQDDCAMMRVVLERRFSQLIKNEENSNFPPKKQEYSFPSWPDVVILDGGRGQLSAAQSV 481 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 KKLN+ENRITIISIAKG +R+AGMEKFFV+ G+ L+L+MRDP+LYFIQ+LRDEAHRFA+ Sbjct: 482 FKKLNIENRITIISIAKGQQRNAGMEKFFVENGKELMLHMRDPVLYFIQKLRDEAHRFAV 541 Query: 543 TTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 TTHRKRRKKA+Y+PL+EINGIGPLRKR LLQSFGTVKMISRSSPETLAS EGISKKIACK Sbjct: 542 TTHRKRRKKASYNPLEEINGIGPLRKRSLLQSFGTVKMISRSSPETLASTEGISKKIACK 601 Query: 603 IYNHFHKNTSHTPT 616 IY HFHKNT T Sbjct: 602 IYTHFHKNTQCKST 615 >gi|88705103|ref|ZP_01102815.1| UvrABC system protein C [Congregibacter litoralis KT71] gi|88700798|gb|EAQ97905.1| UvrABC system protein C [Congregibacter litoralis KT71] Length = 627 Score = 562 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 222/612 (36%), Positives = 332/612 (54%), Gaps = 23/612 (3%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + GVYQM D AG +LYVGKA NL+ R+ SY ++ + ++ +I +I+ TV Sbjct: 29 LKTLTSRCGVYQMYDGAGELLYVGKARNLKNRVSSYFRNSGLNAKTVALVMRIRDIQVTV 88 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE +ALLLE N+IK KP +NILLRDDKS+PYI ++ + + P L HR +G YF Sbjct: 89 TSTEADALLLEHNLIKTHKPPYNILLRDDKSYPYIFLSSEDRFPRLAVHRGRKRKKGRYF 148 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ S AV ++++ LQ+ F +R C DS FR+R+RPCL QI RC+ PC +S E+Y E Sbjct: 149 GPYPSAGAVRQSMHFLQKVFKVRQCEDSYFRNRSRPCLQHQIDRCTAPCVDLVSPEEYGE 208 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YN 240 V + + FL G + L+ ++A +M QA + YE A + RD++ L +QN + Sbjct: 209 QVEKTELFLLGKSRELQVRLADDMEQAAAELAYEKAAVLRDQIQHLQQVQNTQGIEGGHG 268 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-- 298 +D + C+Q F + G+ +F+ K ES ++L FL QFY + Sbjct: 269 DLDVVAAAMEGGQCCLQVLFVRDARVLGSKSFYPKLRLESAEKEVLEAFLPQFYLNGEQR 328 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P +++S + + L F + G KV + + + + ++ A A + L+ Sbjct: 329 LPPELIVSHVPDNAATLAEVFTDKAGRKVVLRERVREARARWLQLAAQTAETNLIAHLAG 388 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + + Q L+ + + P+RIE +D SH G + V VV G K+ YR+FN+ Sbjct: 389 KQTTQERLQVLQEALEMEVHPQRIECFDISHSSGEATVASCVVFDGGGARKSDYRRFNIE 448 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 ++ DD A M L RRF +L +L PD++++DGGKGQ++ Sbjct: 449 G--IEGGDDYAAMHQALTRRFRRLRDEGASL--------------PDILLIDGGKGQVTQ 492 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEA 537 A VLK L V N + ++ +AKG R AG E + G L L +P L+ IQ++RDEA Sbjct: 493 ALTVLKDLQV-NGVEVVGVAKGTTRKAGFETLILGDSGRELQLPGDNPALHLIQQIRDEA 551 Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR RR K S L+ I G+G R+R LL+ FG+ + +S E L I GIS Sbjct: 552 HRFAITGHRNRRDKQRKQSSLESIAGVGAKRRRELLRHFGSAAGVENASVEELRKISGIS 611 Query: 597 KKIACKIYNHFH 608 +A IY+H H Sbjct: 612 ANMAQTIYDHLH 623 >gi|209542234|ref|YP_002274463.1| excinuclease ABC subunit C [Gluconacetobacter diazotrophicus PAl 5] gi|209529911|gb|ACI49848.1| excinuclease ABC, C subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 629 Score = 562 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 272/613 (44%), Positives = 367/613 (59%), Gaps = 11/613 (1%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 ++ + MP PGVY+ML G VLYVGKA L++R+ SY H + R+ M+S+ + Sbjct: 19 LALQTMPLSPGVYRMLGEKGEVLYVGKARILKRRVTSYTHLSKLPERLRRMVSETVTMEI 78 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE EALLLEAN IKR+KPRFNILLRDDKS+P+I++TD + P + KHR S Sbjct: 79 VTTHTEAEALLLEANYIKRMKPRFNILLRDDKSYPWIMLTDGAEFPQVTKHRGKPVKGAS 138 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 Y+GPFAS AV +T+N +QR F LR+C+DSVF RTRPCLLFQIKRCS PC I +Y Sbjct: 139 YWGPFASAWAVNQTLNLIQRVFLLRTCSDSVFASRTRPCLLFQIKRCSAPCVARIGQAEY 198 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI-- 238 V +A+ FLSG ++E++ R M A ++E A RDR+ + +Q+ + Sbjct: 199 AHLVEQARAFLSGQRGGIREELVREMEAAAASLEFERAATIRDRIRGFAAMQDSSVINPA 258 Query: 239 -YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 + D ++ +CIQ F G+N G FF + I+ FL QFY DK Sbjct: 259 SLDDADIVAIAQAAGHSCIQVFFIRGGRNNGNRAFFPAHARDEAAPDIVGAFLAQFYDDK 318 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P P ILL+ E E L+ + + G KV+I VPK+GEKR ++E A NA + +KL+ Sbjct: 319 PPPAQILLNCEIAEHDLMADALGIKRGRKVEILVPKRGEKRAVVEHAETNAREALERKLA 378 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + +L+ F L P+RIEIYDNSHIMG +A G MVV G GF K YRKF++ Sbjct: 379 ESTAQARLLEGMADLFGLDAPPRRIEIYDNSHIMGTNAYGVMVVAGPEGFDKRSYRKFSI 438 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 DD AMMR VLERRFS+ ++ ++ WPD+V++DGG GQ S Sbjct: 439 RGPITPG-DDFAMMREVLERRFSRALRERDDSAGASSP-----ADWPDIVLIDGGAGQYS 492 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A + VL +L V + +T+++IAKGP R AG E F + L RDP+LY++QRLRDEA Sbjct: 493 AVRAVLDELGVTD-VTLVAIAKGPDRDAGREWFHMADRPPFQLPPRDPVLYYLQRLRDEA 551 Query: 538 HRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAITTHR R KA S LDEI G+G RKR LL FG+ + + ++ L + +GI+ Sbjct: 552 HRFAITTHRAGRSKALVKSELDEIPGVGAARKRALLNQFGSARGVRQAGLAELEATQGIN 611 Query: 597 KKIACKIYNHFHK 609 ++ A +Y HFH Sbjct: 612 RETARVVYGHFHP 624 >gi|162147602|ref|YP_001602063.1| excinuclease ABC subunit C [Gluconacetobacter diazotrophicus PAl 5] gi|161786179|emb|CAP55761.1| putative UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C) [Gluconacetobacter diazotrophicus PAl 5] Length = 637 Score = 562 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 272/613 (44%), Positives = 367/613 (59%), Gaps = 11/613 (1%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 ++ + MP PGVY+ML G VLYVGKA L++R+ SY H + R+ M+S+ + Sbjct: 27 LALQTMPLSPGVYRMLGEKGEVLYVGKARILKRRVTSYTHLSKLPERLRRMVSETVTMEI 86 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE EALLLEAN IKR+KPRFNILLRDDKS+P+I++TD + P + KHR S Sbjct: 87 VTTHTEAEALLLEANYIKRMKPRFNILLRDDKSYPWIMLTDGAEFPQVTKHRGKPVKGAS 146 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 Y+GPFAS AV +T+N +QR F LR+C+DSVF RTRPCLLFQIKRCS PC I +Y Sbjct: 147 YWGPFASAWAVNQTLNLIQRVFLLRTCSDSVFASRTRPCLLFQIKRCSAPCVARIGQAEY 206 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI-- 238 V +A+ FLSG ++E++ R M A ++E A RDR+ + +Q+ + Sbjct: 207 AHLVEQARAFLSGQRGGIREELVREMEAAAASLEFERAATIRDRIRGFAAMQDSSVINPA 266 Query: 239 -YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 + D ++ +CIQ F G+N G FF + I+ FL QFY DK Sbjct: 267 SLDDADIVAIAQAAGHSCIQVFFIRGGRNNGNRAFFPAHARDEAAPDIVGAFLAQFYDDK 326 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P P ILL+ E E L+ + + G KV+I VPK+GEKR ++E A NA + +KL+ Sbjct: 327 PPPAQILLNCEIAEHDLMADALGIKRGRKVEILVPKRGEKRAVVEHAETNAREALERKLA 386 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + +L+ F L P+RIEIYDNSHIMG +A G MVV G GF K YRKF++ Sbjct: 387 ESTAQARLLEGMADLFGLDAPPRRIEIYDNSHIMGTNAYGVMVVAGPEGFDKRSYRKFSI 446 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 DD AMMR VLERRFS+ ++ ++ WPD+V++DGG GQ S Sbjct: 447 RGPITPG-DDFAMMREVLERRFSRALRERDDSAGASSP-----ADWPDIVLIDGGAGQYS 500 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A + VL +L V + +T+++IAKGP R AG E F + L RDP+LY++QRLRDEA Sbjct: 501 AVRAVLDELGVTD-VTLVAIAKGPDRDAGREWFHMADRPPFQLPPRDPVLYYLQRLRDEA 559 Query: 538 HRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAITTHR R KA S LDEI G+G RKR LL FG+ + + ++ L + +GI+ Sbjct: 560 HRFAITTHRAGRSKALVKSELDEIPGVGAARKRALLNQFGSARGVRQAGLAELEATQGIN 619 Query: 597 KKIACKIYNHFHK 609 ++ A +Y HFH Sbjct: 620 RETARVVYGHFHP 632 >gi|49474108|ref|YP_032150.1| excinuclease ABC subunit C [Bartonella quintana str. Toulouse] gi|81647123|sp|Q6G041|UVRC_BARQU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|49239612|emb|CAF25970.1| Excinuclease ABC subunit c [Bartonella quintana str. Toulouse] Length = 678 Score = 562 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 304/613 (49%), Positives = 409/613 (66%), Gaps = 7/613 (1%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +P PGVY+M D G VLY+GKA NL+KR+ +Y H +RIT MI ++ F VT Sbjct: 65 KHLPHKPGVYRMFDENGNVLYIGKARNLKKRVSNYTCEQRHNNRITRMIRATYHMEFVVT 124 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL PRFN+LLRDDKSFPYI+IT+ H+ PALYKHR + T + YFG Sbjct: 125 HTETEALLLEANLIKRLHPRFNVLLRDDKSFPYIIITENHRAPALYKHRGARTRKAHYFG 184 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TIN LQR F LR+C DSV +RTRPCLL+QIKRCS PCT EI+ Y E Sbjct: 185 PFASSSAVTQTINVLQRAFLLRTCTDSVLENRTRPCLLYQIKRCSAPCTHEINENDYREL 244 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V AK FLSG + ++K + + M++A D+E A ++RDRL+ALSHIQ+H Sbjct: 245 VRGAKAFLSGKSQSVKNDMIQAMHKAAEDLDFEQAAVYRDRLSALSHIQSHQGINPQTIE 304 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F++ + CIQ FF QN G ++F K D + ++IL+ FL QFY DKP P Sbjct: 305 EADVFAIAQKGGITCIQVFFFRMRQNWGNRSYFPKADPSFSRSEILASFLAQFYDDKPLP 364 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + ILLSEE EE +LL +F + K+ +++PKQGE++ ++ A INA+ + KL+ Sbjct: 365 KLILLSEEIEEKTLLAEAFSLKANRKIFLSLPKQGERKTLVNHAYINAYEALGHKLAETA 424 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 +H +L+ + F LP P RIE+YDNSH+MG +AVG M+V + GF+KNQYRKFN+ Sbjct: 425 THTKLLQGIAEVFQLPQTPHRIEVYDNSHLMGTNAVGAMIVADQMGFLKNQYRKFNIRST 484 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEE---NLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 D+ DD MM+ V++RRFS+LIK N + E F WP+++++DGG+GQ++ Sbjct: 485 DITPGDDFGMMKEVIKRRFSRLIKEHGLPHESNSIKGEDEDCFSIWPNLILIDGGEGQIN 544 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 + +L +L +++ IT++ IAKG R AG E+FF+K L DPILYF+QRLRDEA Sbjct: 545 SVHTILSELKLDDFITVVGIAKGADRGAGHERFFIKGKTPFTLPPHDPILYFLQRLRDEA 604 Query: 538 HRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAI THR +RKKA +PLDEI IG RKR LL FG+ K+++ +S E L + GIS Sbjct: 605 HRFAIKTHRIKRKKATLKNPLDEIKNIGSTRKRALLHHFGSAKIVASASLEDLTKVTGIS 664 Query: 597 KKIACKIYNHFHK 609 IA KI+NHF++ Sbjct: 665 VTIAQKIHNHFNE 677 >gi|254474587|ref|ZP_05087973.1| excinuclease ABC, C subunit [Ruegeria sp. R11] gi|214028830|gb|EEB69665.1| excinuclease ABC, C subunit [Ruegeria sp. R11] Length = 653 Score = 562 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 262/610 (42%), Positives = 380/610 (62%), Gaps = 15/610 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+MLD RVLYVGKA NL+ R+ +Y H+ RI MIS ++ F Sbjct: 52 LKTLDNSPGVYRMLDSESRVLYVGKARNLRARVSNY-SRPGHSPRIEKMISLTASMMFLT 110 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N+IK+LKP++N+LLRDDKSFP IL+ H P + KHR + +GSYF Sbjct: 111 TRTETEALLLEQNLIKQLKPKYNVLLRDDKSFPNILVAKDHAFPQIKKHRGTRREKGSYF 170 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPFAS AV +T+N LQ+ F LR+C++++F RTRPCL +QIKRC+ PCTGEIS+E Y Sbjct: 171 GPFASAGAVNRTLNQLQKAFLLRNCSNAMFESRTRPCLQYQIKRCTAPCTGEISAEDYAA 230 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240 V +A++FLSG + ++E++A M +A+ ++E A RDR+ AL+ +Q Sbjct: 231 SVRDAERFLSGRSTKIQEELAEQMAEASEAMEFERAAALRDRIKALTQVQTSQGINPRGV 290 Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 D L+ + AC+Q F QN G F+ + + A+++ FL QFY +K Sbjct: 291 AEADVIGLHIDSGQACVQVFFIRANQNWGNQDFYPRLSGDVAAAEVMEAFLGQFYDNKEP 350 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P ++LS+E E L+E + ++ G KV+I VP++GEK +++ A+ NA S ++++ Sbjct: 351 PRQLILSDEIENCDLMEQALSEKAGRKVEILVPQRGEKTELVAGAVRNARESLARRMAES 410 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + +L+ F L P+RIE+YDNSHI G AVG M+V G GF+KN YRKFN+ Sbjct: 411 ATQAKLLRGVADAFGLEGPPQRIEVYDNSHIQGSHAVGAMIVSGPEGFMKNAYRKFNIKG 470 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 +++ DD MM+ VL RRFS+L+K + + WPD++++DGG GQ+SA Sbjct: 471 DELTPGDDFGMMKEVLNRRFSRLLKED---------PDKEKGLWPDLLLIDGGAGQVSAV 521 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 ++ + V++ I ++ +AKG R G E+F L DP+LYF+QRLRDEAHR Sbjct: 522 AEIMAERGVDD-IPMVGVAKGVDRDHGKEEFHRLGERPFALQRNDPVLYFVQRLRDEAHR 580 Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAI THR +R KA +PLDE+ G+G RKR LL FG+ K +SR++ L ++EG+S Sbjct: 581 FAIGTHRAKRAKAMGANPLDEVPGVGAARKRALLAHFGSAKAVSRANLADLTAVEGVSAA 640 Query: 599 IACKIYNHFH 608 +A +IY+ FH Sbjct: 641 LAQRIYDFFH 650 >gi|323701485|ref|ZP_08113158.1| excinuclease ABC, C subunit [Desulfotomaculum nigrificans DSM 574] gi|323533494|gb|EGB23360.1| excinuclease ABC, C subunit [Desulfotomaculum nigrificans DSM 574] Length = 617 Score = 561 bits (1446), Expect = e-157, Method: Composition-based stats. Identities = 210/620 (33%), Positives = 332/620 (53%), Gaps = 18/620 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P PGVY D R++YVGKA +L+ R++SY S + + ++ M+ + +I + Sbjct: 6 KIKNIPARPGVYLYKDEEDRIIYVGKAVSLKNRVRSYFQSGDQSPKVKAMLKRAVDIEYI 65 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT +EVEAL+LE N+IK +P++N+LL+DDK++PYI IT + + P L R Y Sbjct: 66 VTDSEVEALILENNLIKEHRPKYNVLLKDDKTYPYIKITLQEEFPRLVITRRVIKDGARY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPF +V AV +TI L++ F LR+C R RPCL F IKRC GPC + +Y Sbjct: 126 FGPFTNVGAVNETIRLLKKIFPLRTCKQRELAPRDRPCLNFHIKRCLGPCCNLVDRARYR 185 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + V+E FL G +L +++ M +A ++E A RD+L A+ + + Sbjct: 186 DMVNEVVLFLEGRQEDLIKRLRLRMEEAAENLEFEKAAELRDQLLAIEKVVERQKVVSTD 245 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D ++ + AC+ F G+ G +FL+ +++S F+++FY+ Sbjct: 246 LVDQDVIAMARGFDEACLTVFFVRGGKLIGREPYFLEGTDNMERGEVMSSFIQRFYSQTE 305 Query: 299 -CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHT 353 P ILLSE+ E+ L+ G KV I VP++G+K K++E A NA ++ Sbjct: 306 FVPAEILLSEDIEDKQLISTWLSGLRGSKVTIKVPQRGDKHKLVEMAAQNALLSLEQAQL 365 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 ++ + + L + T L P+R+E YD S+ G +V MVV E K+QYR Sbjct: 366 ERQAGRDAIDGALAELTAALGLERPPRRMECYDISNTQGTESVASMVVFEEGKPAKDQYR 425 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEY-SFPSWPDVVILDGG 472 +F + V+ +D A M+ L RR ++ + + ++ F PD++I+DGG Sbjct: 426 RFKIRT--VEGPNDFASMKETLSRRLAKAREEQTLIDAGQLPAGRAKFSRLPDLIIIDGG 483 Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532 KGQLSAA+ + + I +AK + F + + + L L +QR Sbjct: 484 KGQLSAAREAMLEQGFA-HIPTFGLAKEEEL-----LFAPGRPDPIRLPRESRGLQMLQR 537 Query: 533 LRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 LRDEAHRFA+T HR+ RKK S LDEI GIGP+R+R L +++ T++ I ++S E LA Sbjct: 538 LRDEAHRFAVTYHRQLRKKRNLKSVLDEIEGIGPVRRRELYKAYKTLEAIKQASVEELAR 597 Query: 592 IEGISKKIACKIYNHFHKNT 611 + G++ K A +Y +F + T Sbjct: 598 VPGMNSKSAEAVYRYFREET 617 >gi|148557385|ref|YP_001264967.1| excinuclease ABC subunit C [Sphingomonas wittichii RW1] gi|148502575|gb|ABQ70829.1| Excinuclease ABC subunit C [Sphingomonas wittichii RW1] Length = 642 Score = 561 bits (1446), Expect = e-157, Method: Composition-based stats. Identities = 262/610 (42%), Positives = 368/610 (60%), Gaps = 14/610 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PGVY+M D G VLYVGKA L+ R+ +Y R++ M++Q ++ Sbjct: 40 LKTLPARPGVYRMQDARGDVLYVGKARALKNRVANYTQVARLPKRLSRMVAQTRSMTIVT 99 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EALLLEA +IKR +P +N+LLRDDKSFP+IL+ + H P + KHR + +G YF Sbjct: 100 TNSEAEALLLEAQLIKRYRPPYNVLLRDDKSFPFILLREDHAFPRIQKHRGARRAKGQYF 159 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPFAS +V +T+N+LQ+ F LRSC DS F +R RPCLL+QIKRCS PC G I Y E Sbjct: 160 GPFASAGSVTRTLNALQKLFLLRSCTDSFFANRDRPCLLYQIKRCSAPCVGRIDEADYAE 219 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240 V ++K FL+G + +++K+ M+ A DYE A ++RDRL AL+ IQ Sbjct: 220 LVDDSKAFLAGKSTQVQKKLGEAMSAAAEAMDYELAAVYRDRLRALTFIQGSQAINAEGV 279 Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 D F+L CIQ F GQN G FF ++ ++L+ FL QFY + P Sbjct: 280 ADADVFALDCKAGTVCIQAFFIRGGQNWGHRAFFPAHTADVPEPEVLASFLMQFYEEVPP 339 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P +L+ E E LL + ++ G KV+I VP++GE+RK++EQA NA + ++L+ Sbjct: 340 PRLVLVGGEPAEAELLAQALGERAGRKVQIKVPQRGEQRKLMEQARRNAREALDRRLAES 399 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + I ++ F L P RIE+YDNSHIMG + VG M+V G GF K YRKFN+ Sbjct: 400 TTQGRIFQEMADLFELEGPPDRIEVYDNSHIMGTNMVGAMIVAGPEGFRKGSYRKFNIKR 459 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD AMMR VLERRF++L K + E WPD++++DGGKGQL A Sbjct: 460 PETAPGDDFAMMREVLERRFARLEKED---------PERRSGEWPDLLLIDGGKGQLGAV 510 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 VL+++ V++ + ++ I+KGP R+AG E F + G +L P+L+ +QRLRDEAHR Sbjct: 511 CEVLEEMGVQD-VPVVGISKGPDRNAGREHFHLPGGREAMLPPNSPLLFHLQRLRDEAHR 569 Query: 540 FAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAI HR +R + SPLD++ GIGP RK+ LL FGT + + +S E L G+S Sbjct: 570 FAIGAHRTKRAASFTKSPLDDVPGIGPARKKALLMHFGTARAVRAASLEDLERAPGVSSA 629 Query: 599 IACKIYNHFH 608 +A I++HFH Sbjct: 630 MARAIHDHFH 639 >gi|329113352|ref|ZP_08242133.1| UvrABC system protein C [Acetobacter pomorum DM001] gi|326697177|gb|EGE48837.1| UvrABC system protein C [Acetobacter pomorum DM001] Length = 637 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 275/613 (44%), Positives = 377/613 (61%), Gaps = 15/613 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + + MP PGVY+ML G VLYVGKA L+KR+ SY H N R+ M+S+ + Sbjct: 32 ALKTMPLSPGVYRMLGAKGEVLYVGKALALKKRVTSYTHINRLPERLRRMVSETVAMEIV 91 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T TE EALLLEAN IKR+KPRFNILLRDDKS+P++++TD H P + KHR + S Sbjct: 92 TTHTEAEALLLEANYIKRMKPRFNILLRDDKSYPWLMLTDAHAFPQIAKHRGKAIKGASL 151 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GPFAS AV +T+N +QR F LRSC D+VF RTRPCLL+QIKRCSGPC I E Y Sbjct: 152 WGPFASAWAVNQTLNLIQRVFLLRSCTDAVFNARTRPCLLYQIKRCSGPCVDRIDQEAYG 211 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 + V +A++FLSG + L+E + + MN A D+E A + RDR+ AL+ +Q + Sbjct: 212 KLVEQAREFLSGKDTALRETLGQEMNAAAEALDFERAAVLRDRIRALAQMQESSVINPAS 271 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D +L+ ACIQ F G+N G+ +FF +++ A +LS F+ QFY DKP Sbjct: 272 LQDADVLALWQEAGHACIQVFFIRGGRNNGSRSFFPAHTQDASPADVLSAFIAQFYDDKP 331 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 CP IL++ E E+ LL + + G KV+I P++GEK+++++ A+ NA + ++KL+ Sbjct: 332 CPAQILVNYELPESLLLTEALSLRRGRKVEILAPQRGEKKQVLDHAVSNARDALSRKLAE 391 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 +L+ L P+RIE+YDNSHI G A G M+V G GF + YRKF + Sbjct: 392 TAGQAKLLQGVADVLGLDAPPERIEVYDNSHIQGSHAYGVMIVGGPEGFNRKAYRKFKIK 451 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 DD MMR VLERRF + +K E + +WPDV+++DGG GQ SA Sbjct: 452 GPVTPG-DDFGMMREVLERRFGRALKEAEEGDT---------SNWPDVLLIDGGAGQYSA 501 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 + VL L V + ++ IAKGP R AG E F+ + E L++RDP+LY++QRLRDEAH Sbjct: 502 VRSVLDDLGVTG-VKLVGIAKGPDRDAGKEWFYTEDKEPFQLDLRDPVLYYLQRLRDEAH 560 Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAITTHR R K S LD++ GIGP RK+LLL +FG+ + I ++ L + GIS+ Sbjct: 561 RFAITTHRSGRSKTLVKSELDDVPGIGPARKKLLLNTFGSARAIKQAGLAELEAAHGISR 620 Query: 598 KIACKIYNHFHKN 610 + A IY HFH + Sbjct: 621 ETARAIYGHFHPD 633 >gi|332982397|ref|YP_004463838.1| Excinuclease ABC subunit C [Mahella australiensis 50-1 BON] gi|332700075|gb|AEE97016.1| Excinuclease ABC subunit C [Mahella australiensis 50-1 BON] Length = 622 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 205/618 (33%), Positives = 336/618 (54%), Gaps = 21/618 (3%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFT 61 + +P+ PGVY M D GR++Y+GKA +L+ R++ Y S+ NH+ RI MI+ I + + Sbjct: 12 LKDLPDKPGVYIMRDKDGRIIYIGKAVSLKNRVRQYFRSSTNHSPRIRSMIAHIADFEYI 71 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 +T +EVEAL+LE ++IK P++N+ LRDDK +PYI IT P + R + Y Sbjct: 72 LTDSEVEALVLECSLIKEYHPKYNVSLRDDKHYPYIKITVNEPYPRIMLARSTEPDGARY 131 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 FGP+ + AV++TI +L+ F +R+C + + + RPCL + I +C PC +I +E+Y Sbjct: 132 FGPYPNSAAVKETIETLKGLFPVRTCKRNLNSKKKERPCLDYYIGQCMAPCQKDIPAEQY 191 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + + + FL G ++ +K+ M A ++E A + RD++ A+ +Q + Sbjct: 192 ADVIRQVCDFLDGRQEDIIDKLKEQMRNAIDALNFEKAAVLRDKINAILSLQEKQKVVST 251 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD- 296 D ++ + +Q F G+ G F L+ A +L+ F+ QFY+ Sbjct: 252 ELIDQDVIGVFQQDEDSMVQVFFIRGGRMIGAEHFLLEDTGHDDTASLLASFMEQFYSGI 311 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK- 355 P +LL E+ +E + G ++++ VP +GEKR+++E A NA + + Sbjct: 312 NFIPSEVLLPVWPEDGQTIEKWLSDKKGLRIQLKVPIKGEKRELVEMAEENAREALERFS 371 Query: 356 ---LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + Q L+ + L +P RIE +D SHI G V MVV + Y Sbjct: 372 LKIKADKQRTQGALEQLAEILGLDQMPWRIEAFDISHIQGTDTVASMVVAEGGRPKNSDY 431 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNF-HPKKQEYSFPSWPDVVILDG 471 R+F + + DD A M V++RR+S+ + + L ++ F ++PD++++DG Sbjct: 432 RRFRI---SMPQNDDFASMAEVVDRRYSKGLSEKRQLAAKGLDIKDGKFSAFPDLILIDG 488 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 G+GQL+AA+ VL +L ++ I II +AK + E + + E LVL P L +Q Sbjct: 489 GRGQLNAARQVLARLGLD-YIPIIGLAKENE-----EIYIPDRSEPLVLPKDSPALQLLQ 542 Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 R+RDEAHRFAI+ HR R K+ S LD I GIG R++ L++ FG+V+ I R+ E LA Sbjct: 543 RIRDEAHRFAISYHRSLRGKSALQSVLDNIPGIGDKRRKALMEYFGSVESIKRAGVEELA 602 Query: 591 SIEGISKKIACKIYNHFH 608 SI+ ++ A K+Y +FH Sbjct: 603 SIKAMNISAAKKVYEYFH 620 >gi|330875459|gb|EGH09608.1| excinuclease ABC subunit C [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330968112|gb|EGH68372.1| excinuclease ABC subunit C [Pseudomonas syringae pv. actinidiae str. M302091] Length = 607 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 218/609 (35%), Positives = 333/609 (54%), Gaps = 25/609 (4%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+M D +LYVGKA NL+KR+ SY H + ++++I I T+T E E Sbjct: 17 RPGVYRMFDADATLLYVGKAKNLKKRLASYFRKTGHAPKTGALVARIAQIETTITNNETE 76 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE +IK +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S Sbjct: 77 ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDS-TYPRLSIHRGAKKAKGRYFGPYPSA 135 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 A+ ++++ LQ+TF +R C DS F++R RPCL +QIKRC GPC G + + Y E V + Sbjct: 136 GAIRESLSLLQKTFQVRQCEDSFFKNRNRPCLQYQIKRCKGPCVGLVEPDVYAEDVRHSV 195 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246 FL G ++ L +++ +M +A + D+E A RD++A L +Q+ +D + Sbjct: 196 MFLEGRSNALSDELNASMEKAAMALDFERAAELRDQVALLRRVQDQQSMDGGTGDVDVVA 255 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENI 303 + N AC+ G+ G+ FF + E +++S FL Q++ D+ P + Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAFLAQYFLGGVDRELPSEV 315 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 +++ E+ L + + G ++ I+ +G + + + A+ NA ++ +L+ Sbjct: 316 IVNVVNEDFPALIDAIEESRGREMTISHRVRGTRARWQQLAVTNAEQALAARLANRQHVA 375 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 + L P R+E YD SH G + V VV G G +K+ YR+FN+ V Sbjct: 376 SRFEALAVVLNLDEPPMRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VT 433 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD A M L RR+S++ E L PDV+++DGGKGQ+S A+ VL Sbjct: 434 AGDDYAAMHQALTRRYSRIKAGEGKL--------------PDVLLVDGGKGQMSMARDVL 479 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542 +L V + I ++ +AKG R AG E ++ L P L+ IQ++RDEAHRFAI Sbjct: 480 NELQVPDLI-LLGVAKGTTRKAGFETLYLNDAAHEFTLPGDSPALHLIQQIRDEAHRFAI 538 Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR K S L+ I G+GP R+R LL+ FG ++ +SR+S + +A GISKK+A Sbjct: 539 TGHRARRGKTRRTSTLEGIAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAE 598 Query: 602 KIYNHFHKN 610 IY + H Sbjct: 599 SIYANLHSE 607 >gi|302189905|ref|ZP_07266578.1| excinuclease ABC subunit C [Pseudomonas syringae pv. syringae 642] Length = 607 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 220/609 (36%), Positives = 335/609 (55%), Gaps = 25/609 (4%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+M D +LYVGKA NL+KR+ SY H + ++S+I I T+T E E Sbjct: 17 RPGVYRMFDAEATLLYVGKAKNLKKRLASYFRKTGHAPKTGALVSRIAQIETTITGNETE 76 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE +IK +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S Sbjct: 77 ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDN-AFPRLSIHRGTKKAKGRYFGPYPSA 135 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 A+ ++++ LQ+TF +R C DS F++RTRPCL +QIKRC GPC G + E Y E V + Sbjct: 136 GAIRESLSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSV 195 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246 FL G ++ L +++ +M +A + D+E A RD++A L +Q+ +D + Sbjct: 196 MFLEGRSNALSDELNASMEKAAMALDFERAAELRDQVALLRRVQDQQSMDGGTGDVDVVA 255 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENI 303 + N AC+ G+ G+ FF + E +++S FL Q++ D+ P + Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAFLAQYFLGGIDRELPGEV 315 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 +++ ++ + + G ++ I+ +G + + + A+ NA ++ T +L+ Sbjct: 316 IVNVINDDFPAFVDAIEELRGVEMVISHRVRGTRARWQQMAVTNAEQALTARLANRQHVA 375 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 + K L P R+E YD SH G + V VV G G +K+ YR+FN+ V Sbjct: 376 SRFEALAKVLGLEDPPMRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VT 433 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD A M L RR+S++ E L PDV+++DGGKGQ+S A+ VL Sbjct: 434 AGDDYAAMHQALTRRYSRIKAGEGKL--------------PDVLLVDGGKGQMSMARDVL 479 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAI 542 +L V + I ++ +AKG R AG E ++ L P L+ IQ++RDEAHRFAI Sbjct: 480 NELQVPDLI-LLGVAKGTTRKAGFETLYLNDSAHEFTLPGDSPALHLIQQIRDEAHRFAI 538 Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR K S L+ + G+GP R+R LL+ FG ++ +SR+S + +A GISKK+A Sbjct: 539 TGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAE 598 Query: 602 KIYNHFHKN 610 IY + H Sbjct: 599 SIYANLHSE 607 >gi|330980421|gb|EGH78524.1| excinuclease ABC subunit C [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 607 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 220/609 (36%), Positives = 335/609 (55%), Gaps = 25/609 (4%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+M D +LYVGKA NL+KR+ SY H + ++S+I I T+T E E Sbjct: 17 RPGVYRMFDAEATLLYVGKAKNLKKRLASYFRKTGHAPKTGALVSRIAQIETTITGNETE 76 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE +IK +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S Sbjct: 77 ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDN-AFPRLSIHRGTKKAKGRYFGPYPSA 135 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 A+ ++++ LQ+TF +R C DS F++RTRPCL +QIKRC GPC G + E Y E V + Sbjct: 136 GAIRESLSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSV 195 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246 FL G ++ L +++ +M +A + D+E A RD++A L +Q+ +D + Sbjct: 196 MFLEGRSNALSDELNASMEKAAMALDFERAAELRDQVALLRRVQDQQSMDGGTGDVDVVA 255 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENI 303 + N AC+ G+ G+ FF + E +++S FL Q++ D+ P + Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAFLAQYFLGGIDRELPGEV 315 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 +++ ++ + + G ++ I+ +G + + + A+ NA ++ T +L+ Sbjct: 316 IVNVINDDFPAFVDAVEELRGVEMVISHRVRGTRARWQQMAVTNAEQALTARLANRQHVA 375 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 + K L P R+E YD SH G + V VV G G +K+ YR+FN+ V Sbjct: 376 SRFEALAKVLGLEDPPMRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VT 433 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD A M L RR+S++ E L PDV+++DGGKGQ+S A+ VL Sbjct: 434 AGDDYAAMHQALTRRYSRIKAGEGKL--------------PDVLLVDGGKGQMSMARDVL 479 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAI 542 +L V + I ++ +AKG R AG E ++ L P L+ IQ++RDEAHRFAI Sbjct: 480 NELQVPDLI-LLGVAKGTTRKAGFETLYLNDSAHEFTLPGDSPALHLIQQIRDEAHRFAI 538 Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR K S L+ + G+GP R+R LL+ FG ++ +SR+S + +A GISKK+A Sbjct: 539 TGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAE 598 Query: 602 KIYNHFHKN 610 IY + H Sbjct: 599 SIYANLHSE 607 >gi|326388848|ref|ZP_08210430.1| excinuclease ABC subunit C [Novosphingobium nitrogenifigens DSM 19370] gi|326206448|gb|EGD57283.1| excinuclease ABC subunit C [Novosphingobium nitrogenifigens DSM 19370] Length = 671 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 258/605 (42%), Positives = 355/605 (58%), Gaps = 14/605 (2%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+MLD G VLYVGKA L+ R+ +Y + +R+ M+S ++ T +E E Sbjct: 77 QPGVYRMLDARGDVLYVGKARALKNRVANYTQVDRLPNRLRRMVSLTRSMTIVTTNSEAE 136 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLEA +IKR +P +N+LLRDDKSFP+IL+ H P + KHR + +G+Y+GPFAS Sbjct: 137 ALLLEAQLIKRYRPAYNVLLRDDKSFPFILLRSDHAFPRIMKHRGARKAKGNYYGPFASA 196 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 +V TIN+LQ+ F LRSC D R RPCLL+QI+RCS PC G I E Y E V +A+ Sbjct: 197 GSVNTTINALQKLFLLRSCNDGFMARRDRPCLLYQIRRCSAPCVGRIDEEGYAELVRQAR 256 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNRMDCF 245 FLSG + ++ +I M++A D+E A + RDRL A + IQ D F Sbjct: 257 DFLSGKSGAVQREIEAQMSEAAEALDFERAAMLRDRLRAATFIQGSQAINAEGVGNADVF 316 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILL 305 ++ IQ F GQN G FF A++L+ FL QFY D P P IL+ Sbjct: 317 AVAAKGGHVGIQAFFIRGGQNWGHRAFFPTHTDGLEEAEVLTSFLAQFYEDVPPPRLILV 376 Query: 306 SEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365 E LL + G KV+I+VP++G++R+++EQA NA + ++L+ + I Sbjct: 377 DRLLPEADLLAEALQGGAGGKVEISVPQRGDRRRLMEQAERNAVEALDRRLAETGTKAKI 436 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 ++ L P RIEIYDNSHI G +AVG MVV G GF K QYRKFN+ + + Sbjct: 437 FREIADFLELGDPPDRIEIYDNSHIQGTNAVGGMVVAGPEGFRKGQYRKFNIKRPETQPG 496 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD AMMR V+ RRFS+ + E WPD+V++DGGKGQ++A + L++ Sbjct: 497 DDFAMMREVMARRFSRAQDED---------PERDKGMWPDLVLIDGGKGQMTAVRETLEE 547 Query: 486 LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545 L +E+ + +I ++KGP R+AG E F G +L + P+L+ +Q+LRDEAHRFAI H Sbjct: 548 LGIED-VPLIGVSKGPDRNAGREVFHFPDGREKMLPINSPMLFHLQQLRDEAHRFAIGAH 606 Query: 546 RKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 R +R +A SPLDEI GIGP RKR LL FGT + +S E L G+S +A IY Sbjct: 607 RAKRSRAITASPLDEIPGIGPARKRALLLHFGTAGKVRAASLEDLQRAPGVSAAVAQTIY 666 Query: 605 NHFHK 609 + +H Sbjct: 667 DFYHP 671 >gi|28870199|ref|NP_792818.1| excinuclease ABC subunit C [Pseudomonas syringae pv. tomato str. DC3000] gi|32130288|sp|Q880X7|UVRC_PSESM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|28853445|gb|AAO56513.1| excinuclease ABC, C subunit [Pseudomonas syringae pv. tomato str. DC3000] gi|331015423|gb|EGH95479.1| excinuclease ABC subunit C [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 607 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 219/609 (35%), Positives = 333/609 (54%), Gaps = 25/609 (4%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+M D +LYVGKA NL+KR+ SY H + ++++I I T+T E E Sbjct: 17 RPGVYRMFDADATLLYVGKAKNLKKRLASYFRKTGHAPKTGALVARIAQIETTITNNETE 76 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE +IK +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S Sbjct: 77 ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDG-TYPRLSIHRGAKKAKGRYFGPYPSA 135 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 A+ ++++ LQ+TF +R C DS F++R RPCL +QIKRC GPC G + E Y E V + Sbjct: 136 GAIRESLSLLQKTFQVRQCEDSFFKNRNRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSV 195 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246 FL G ++ L +++ +M +A + D+E A RD++A L +Q+ +D + Sbjct: 196 MFLEGRSNALSDELNASMEKAAMALDFERAAELRDQVALLRRVQDQQSMDGGTGDVDVVA 255 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENI 303 + N AC+ G+ G+ FF + E +++S FL Q++ D+ P + Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAFLAQYFLGGVDRELPSEV 315 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 +++ E+ L + + G ++ I+ +G + + + A+ NA ++ +L+ Sbjct: 316 IVNVVNEDFPALIDAIEESRGREMTISHRVRGTRARWQQLAVTNAEQALAARLANRQHVA 375 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 + L P R+E YD SH G + V VV G G +K+ YR+FN+ V Sbjct: 376 SRFEALAVVLNLDEPPMRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VT 433 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD A M L RR+S++ E L PDV+++DGGKGQ+S A+ VL Sbjct: 434 AGDDYAAMHQALTRRYSRIKAGEGKL--------------PDVLLVDGGKGQMSMARDVL 479 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542 +L V + I ++ +AKG R AG E ++ L P L+ IQ++RDEAHRFAI Sbjct: 480 NELQVPDLI-LLGVAKGTTRKAGFETLYLNDAAHEFTLPGDSPALHLIQQIRDEAHRFAI 538 Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR K S L+ I G+GP R+R LL+ FG ++ +SR+S + +A GISKK+A Sbjct: 539 TGHRARRGKTRRTSTLEGIAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAE 598 Query: 602 KIYNHFHKN 610 IY + H Sbjct: 599 SIYANLHSE 607 >gi|83312899|ref|YP_423163.1| excinuclease ABC subunit C [Magnetospirillum magneticum AMB-1] gi|119367664|sp|Q2W0M1|UVRC_MAGMM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|82947740|dbj|BAE52604.1| Nuclease subunit of the excinuclease complex [Magnetospirillum magneticum AMB-1] Length = 624 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 270/610 (44%), Positives = 382/610 (62%), Gaps = 14/610 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+ML G VLYVGKA +L+KR+ +Y + RI MI++ ++ T Sbjct: 24 TLPLSPGVYRMLSGKGDVLYVGKAKSLKKRVVAYTRPDRMPLRIQRMIAETASMEVVTTR 83 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TEVEALLLE+N+IK L PR+NILL+DDK+FP+ILIT H P + KHR + +G YFGP Sbjct: 84 TEVEALLLESNLIKSLGPRYNILLKDDKTFPHILITADHDWPQVLKHRGARNRKGEYFGP 143 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 FAS AV +T+ +LQR F LRSC+DSVF RTRPCLLFQIKRCS PC I ++Y+ V Sbjct: 144 FASAGAVNQTLAALQRAFLLRSCSDSVFASRTRPCLLFQIKRCSAPCVERIDRDEYLALV 203 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241 EA+ FLSG + ++ + M A +YE+A + RDR+ AL+ IQ H D Sbjct: 204 EEARAFLSGQSRRVQHDLTARMESAAEAMEYEAAAVFRDRIRALTRIQAHQDINPAEVEE 263 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D +L+ + CIQ FF G N G +F QI++ FL QFY DK P Sbjct: 264 ADVVALHQAGDGVCIQVFFFRSGCNYGNRAYFPVHAQGEEAPQIMAAFLGQFYADKTPPR 323 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 ILLS E +E +++ + ++ G KV ++VPK+G++++++E A NA + ++++ + Sbjct: 324 EILLSLEPDEVAIVAQALSEKAGRKVTLSVPKRGDRKRLVEHAHDNARDALGRRMAESGA 383 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 + +L+ + F + P+RIE+YDNSHI G AVG M+V G +G +K+ YRKFN+ D Sbjct: 384 QRKLLEGVAELFGMESAPERIEVYDNSHIQGSDAVGAMIVAGPDGLMKSAYRKFNIRSTD 443 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 + DD MMR VL RRF++ K + + WPD+ ++DGG+GQL+AA G Sbjct: 444 LTPGDDFGMMREVLTRRFARAQKED---------PDRDRGLWPDLALIDGGRGQLNAALG 494 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 VL +L +++ + ++ IAKGP R+AG E+FF+ E + L R P+LYF+QRLRDEAHRFA Sbjct: 495 VLAELGIDD-VMLVGIAKGPDRNAGRERFFLAGKEPISLESRHPVLYFLQRLRDEAHRFA 553 Query: 542 ITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 I THR RR K S LD + GIGP RK+ LL FG+ + ++ + L S+EGIS +A Sbjct: 554 IGTHRARRSKGLVQSTLDALPGIGPKRKKALLHHFGSARAVAEAGLPDLESVEGISHAMA 613 Query: 601 CKIYNHFHKN 610 KI+++FH Sbjct: 614 KKIHDYFHPE 623 >gi|88813713|ref|ZP_01128939.1| excinuclease ABC subunit C [Nitrococcus mobilis Nb-231] gi|88789032|gb|EAR20173.1| excinuclease ABC subunit C [Nitrococcus mobilis Nb-231] Length = 606 Score = 560 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 236/608 (38%), Positives = 355/608 (58%), Gaps = 21/608 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P+ PGVY+MLD AG+V+YVGKA L+ R+ SY H + M++Q+++++ T+T Sbjct: 15 TLPQRPGVYRMLDGAGKVIYVGKARKLKHRVSSYFTRTMHDAKTRAMLAQVHDVQITLTH 74 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLE N+IK L+PR+N+LLRDDKS+PYI ++ + P L HR G YFGP Sbjct: 75 TEAEALLLENNLIKELRPRYNVLLRDDKSYPYIFLSKQQHFPRLAFHRGPRKPPGRYFGP 134 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV +T+N L++ F LR C DS F +R+RPCL +QIKRC+ PC G IS E Y V Sbjct: 135 FPSAGAVRQTLNHLKKVFPLRQCRDSFFNNRSRPCLQYQIKRCTAPCVGYISEEAYAVDV 194 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NRM 242 + FL G + + +++ + M A+ +YE A RDR++AL IQ + Sbjct: 195 RHVELFLEGHRNQVIDELVQRMEGASEALEYEQAARLRDRISALRRIQERQYVAGARGDV 254 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D + + L CIQ G+N G TFF + ++ A+ L F+ + Y + P Sbjct: 255 DVIACLAHSELICIQVFMIRDGRNLGNQTFFPRIPEGTSEAEALYAFIARHYLGRDIPME 314 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 +L+S + E+ +LLE + + G++V+I +GE+R+ +E A NA + T +++T Sbjct: 315 LLVSHDFEDRALLEEALARDAGHRVRIQWRLRGERRRWLEMAASNARHALTAQIATRAGM 374 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 + ++ L +P+RIE +D SH G + V VV G +K+ YR+FN+ + Sbjct: 375 ERRFEELQLALDLDGMPERIECFDISHTQGEATVASCVVFNRAGPLKSDYRRFNV--AGI 432 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 + DD A +R LERR+++L + E PD++++DGG+GQL AQ V Sbjct: 433 ERGDDYAALRQALERRYTRLKRGE--------------APIPDILLIDGGRGQLKQAQIV 478 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFA 541 L++L VE+ + +I IAKGP+R AG E F+ + L L P L+ +Q +RDEAHRFA Sbjct: 479 LRELQVED-VQLIGIAKGPRRRAGEETLFIAGRPGVLQLAPDSPALHLLQHVRDEAHRFA 537 Query: 542 ITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 IT HR RR +K S L+EI G+GP R++ LL+ G + + R+ E LA + GIS+ +A Sbjct: 538 ITGHRVRRGRKRTTSMLEEIPGLGPKRRQSLLKQLGGLHGVRRAGIEDLARVPGISQALA 597 Query: 601 CKIYNHFH 608 +IY H Sbjct: 598 ERIYQTLH 605 >gi|319407079|emb|CBI80716.1| excinuclease ABC subunit C [Bartonella sp. 1-1C] Length = 659 Score = 560 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 310/611 (50%), Positives = 423/611 (69%), Gaps = 5/611 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +P PGVY+ML+ G +LY+GKA NL+KR+ Y + H +RIT MI + N++ F VT Sbjct: 48 KNLPHKPGVYRMLNENGDILYIGKAQNLKKRVSHYTREHGHNNRITRMIRETNHMEFVVT 107 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+LLRDDK+ PYI+ITD H+ PALYKHR + T + YFG Sbjct: 108 HTETEALLLEANLIKRLQPRFNVLLRDDKTLPYIIITDDHRAPALYKHRGARTRKAHYFG 167 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS +AV +TIN LQR F LR+C DSV + TRPCLL+QIKRCS PCT EISS Y++ Sbjct: 168 PFASSEAVTQTINVLQRAFLLRTCTDSVLENCTRPCLLYQIKRCSAPCTHEISSSDYLQL 227 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V +AK FLSG + ++K + + M++A D+E AI +RDRL+ALSHIQ+H Sbjct: 228 VKKAKAFLSGKSQSVKNDMVQAMHKAAENLDFERAITYRDRLSALSHIQSHQSINPQTVK 287 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F++ + + CIQ FF GQN G ++F K D ++++IL+ FL QFY +KP P Sbjct: 288 EADVFAIAQQEGMTCIQVFFFRMGQNWGNRSYFPKADPSFSSSEILASFLIQFYDNKPIP 347 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + ILLS +E LL + + +K+ +++PKQGE++ ++ A NA+ + +KLS Sbjct: 348 KLILLSNTIDEEILLTEALSLKANHKISLSLPKQGERKALVNHAYTNAYEALQRKLSETS 407 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 +H+ L + K F L H P+RIE+YDNSH+MG +AVG M+VV + GFVKNQYRKFN+ Sbjct: 408 AHKKFLCNIVKTFQLSHTPRRIEVYDNSHLMGTNAVGVMIVVDQTGFVKNQYRKFNICST 467 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPK-KQEYSFPSWPDVVILDGGKGQLSAA 479 D+K DD MM+ V+ERRF +L+K N + E S+P WPD++++DGG+GQ++ Sbjct: 468 DIKPGDDLGMMKEVIERRFLRLLKTYGLPNKNKNIGYEDSYPLWPDLILIDGGQGQINIT 527 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 VL +L +++ IT+I IAKGP R AG+E+FF+K + L DPILYF+QRLRDEAHR Sbjct: 528 NTVLSELGLDDFITVIGIAKGPDRKAGLERFFMKGKQPFTLPPHDPILYFLQRLRDEAHR 587 Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAI TH+ +RKK +PLDEI IGP RKR LL FG+ K +SR+S E L + GISK+ Sbjct: 588 FAIGTHKAKRKKETFKNPLDEIENIGPTRKRALLNYFGSSKAVSRASVEDLTKVTGISKE 647 Query: 599 IACKIYNHFHK 609 IA KI+N+F+K Sbjct: 648 IAYKIHNYFNK 658 >gi|90021698|ref|YP_527525.1| excinuclease ABC subunit C [Saccharophagus degradans 2-40] gi|119367831|sp|Q21J16|UVRC_SACD2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|89951298|gb|ABD81313.1| Excinuclease ABC subunit C [Saccharophagus degradans 2-40] Length = 612 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 232/614 (37%), Positives = 338/614 (55%), Gaps = 23/614 (3%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + + PGVYQM D G +LYVGKA NL+ R+ SY + T + ++ +I I TV Sbjct: 16 LKNVTKLPGVYQMYDADGAILYVGKAKNLKNRLSSYFRATGLTPKTHALVKRIQAIEVTV 75 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N+IK KP FNILLRDDKSFPYI I++ P L HR +G YF Sbjct: 76 TPSEAEALVLEHNLIKSQKPPFNILLRDDKSFPYIFISEGEPYPKLAFHRGPKKKKGQYF 135 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF + AV++T+N LQRTF +R C DSVFR RTRPCL +QI RC+GPC IS E Y Sbjct: 136 GPFPNASAVKETLNFLQRTFRVRQCEDSVFRSRTRPCLQYQIGRCTGPCVEAISVEDYAV 195 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YN 240 + FL G + L++++ M QA+ D+E A++ RD++ L +Q Y+ Sbjct: 196 DLAHTAMFLDGKSEVLQQELQVEMEQASQALDFERAVVVRDQITDLRQVQAQQVMEAGYS 255 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK--- 297 D + + CI + G+ G+ ++ KT +ST +LS FL Y Sbjct: 256 NQDVVACASESGVHCIHILYVRQGRIVGSKSYLPKTKLDSTEEDVLSAFLAHHYLGGAAM 315 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P +I++S + + ++ + K G ++K+T + + K + AL A ++ L+ Sbjct: 316 DVPPHIIISHKLADQLIIGEAVEKATGKQLKLTHNVRTYRAKWLAMALEAARQNLKNHLN 375 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + + + L P RIE +D SH G VG VV +NG K+ YR+FN+ Sbjct: 376 NKQTLVARFESLQDILGLDETPNRIECFDISHSSGELTVGSCVVFDQNGAKKSDYRRFNI 435 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 +K DD A M VL RR+++L K S PD+V++DGGKGQLS Sbjct: 436 EG--IKAGDDYAAMEQVLTRRYTRLQKE--------------SSSMPDLVLIDGGKGQLS 479 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ V+++L + + + +I +AKG R G E + G VL L+ IQ++RDEA Sbjct: 480 KAKAVVEELGIHD-MMLIGVAKGTTRKPGFETLVLTSGAERVLKADSAALHLIQQIRDEA 538 Query: 538 HRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT H++RR KK S L+ I G+GP R++ LL FG ++ + R++ + LA IS Sbjct: 539 HRFAITGHKQRRDKKRRTSVLEGIPGVGPKRRKELLVHFGGLQEVLRANVDDLAKAPSIS 598 Query: 597 KKIACKIYNHFHKN 610 KK+A +IYN H Sbjct: 599 KKMAQEIYNVLHSE 612 >gi|330970024|gb|EGH70090.1| excinuclease ABC subunit C [Pseudomonas syringae pv. aceris str. M302273PT] Length = 607 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 220/609 (36%), Positives = 334/609 (54%), Gaps = 25/609 (4%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+M D +LYVGKA NL+KR+ SY H + ++S+I I T+T E E Sbjct: 17 RPGVYRMFDAEATLLYVGKAKNLKKRLASYFRKTGHAPKTGALVSRIAQIETTITGNETE 76 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE +IK +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S Sbjct: 77 ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDN-AFPRLSIHRGTKKAKGRYFGPYPSA 135 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 A+ ++++ LQ+TF +R C DS F++RTRPCL +QIKRC GPC G + E Y E V + Sbjct: 136 GAIRESLSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSV 195 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246 FL G ++ L +++ +M +A + D+E A RD++A L +Q+ +D + Sbjct: 196 MFLEGRSNALSDELNASMEKAAMALDFERAAELRDQVALLRRVQDQQSMDGGTGDVDVVA 255 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENI 303 + N AC+ G+ G+ FF + E +++S FL Q++ D+ P + Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAFLAQYFLGGIDRELPGEV 315 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 +++ ++ + + G ++ I+ +G + + + A+ NA ++ T +L+ Sbjct: 316 IVNVINDDFPAFVDAVEELRGVEMVISHRVRGTRARWQQMAVTNAEQALTARLANRQHVA 375 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 + K L P R+E YD SH G + V VV G G +K+ YR+FN+ V Sbjct: 376 SRFEALAKVLGLEDPPMRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VT 433 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD A M L RR+S++ E L PDV+++DGGKGQ+S A+ VL Sbjct: 434 AGDDYAAMHQALTRRYSRIKAGEGKL--------------PDVLLVDGGKGQMSMARDVL 479 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAI 542 +L V I ++ +AKG R AG E ++ L P L+ IQ++RDEAHRFAI Sbjct: 480 NELQVPELI-LLGVAKGTTRKAGFETLYLNDSAHEFTLPGDSPALHLIQQIRDEAHRFAI 538 Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR K S L+ + G+GP R+R LL+ FG ++ +SR+S + +A GISKK+A Sbjct: 539 TGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAE 598 Query: 602 KIYNHFHKN 610 IY + H Sbjct: 599 SIYANLHSE 607 >gi|66046127|ref|YP_235968.1| excinuclease ABC subunit C [Pseudomonas syringae pv. syringae B728a] gi|76803829|sp|Q52377|UVRC_PSEU2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|63256834|gb|AAY37930.1| Excinuclease ABC, C subunit [Pseudomonas syringae pv. syringae B728a] Length = 607 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 220/609 (36%), Positives = 334/609 (54%), Gaps = 25/609 (4%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+M D +LYVGKA NL+KR+ SY H + ++S+I I T+T E E Sbjct: 17 RPGVYRMFDAEATLLYVGKAKNLKKRLASYFRKTGHAPKTGALVSRIAQIETTITGNETE 76 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE +IK +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S Sbjct: 77 ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDN-AFPRLSIHRGTKKAKGRYFGPYPSA 135 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 A+ ++++ LQ+TF +R C DS F++RTRPCL +QIKRC GPC G + E Y E V + Sbjct: 136 GAIRESLSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSV 195 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246 FL G ++ L +++ +M +A + D+E A RD++A L +Q+ +D + Sbjct: 196 MFLEGRSNALSDELNASMEKAAMALDFERAAELRDQVALLRRVQDQQSMDGGTGDVDVVA 255 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENI 303 + N AC+ G+ G+ FF + E +++S FL Q++ D+ P + Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAFLAQYFLGGIDRELPGEV 315 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 +++ ++ + + G ++ I+ +G + + + A+ NA ++ T +L+ Sbjct: 316 IVNVINDDFPAFVDAVEELRGVEMVISHRVRGTRARWQQMAVTNAEQALTARLANRQHVA 375 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 + K L P R+E YD SH G + V VV G G +K+ YR+FN+ V Sbjct: 376 SRFEALAKVLGLEDPPMRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VT 433 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD A M L RR+S++ E L PDV+++DGGKGQ+S A+ VL Sbjct: 434 AGDDYAAMHQALTRRYSRIKAGEGKL--------------PDVLLVDGGKGQMSMARDVL 479 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAI 542 +L V I ++ +AKG R AG E ++ L P L+ IQ++RDEAHRFAI Sbjct: 480 NELQVPELI-LLGVAKGTTRKAGFETLYLNDSAHEFTLPGDSPALHLIQQIRDEAHRFAI 538 Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR K S L+ + G+GP R+R LL+ FG ++ +SR+S + +A GISKK+A Sbjct: 539 TGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAE 598 Query: 602 KIYNHFHKN 610 IY + H Sbjct: 599 SIYANLHSE 607 >gi|298486859|ref|ZP_07004915.1| Excinuclease ABC subunit C [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158726|gb|EFH99790.1| Excinuclease ABC subunit C [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 607 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 220/609 (36%), Positives = 334/609 (54%), Gaps = 25/609 (4%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+M D +LYVGKA NL+KR+ SY H + ++S+I I T+T E E Sbjct: 17 RPGVYRMFDAEATLLYVGKAKNLKKRLASYFRKTGHAPKTGALVSRIAQIETTITGNETE 76 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE +IK +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S Sbjct: 77 ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDG-NYPRLSIHRGAKKAKGRYFGPYPSA 135 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 A+ ++++ LQ+TF +R C DS F++RTRPCL +QIKRC GPC G + E Y E V + Sbjct: 136 GAIRESLSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSV 195 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246 FL G ++ L +++ +M +A + D+E A RD++A L +Q+ +D + Sbjct: 196 MFLEGRSNALSDELNASMEKAAMALDFERAAELRDQVALLRRVQDQQSMDGGTGDVDVVA 255 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENI 303 + N AC+ G+ G+ FF + E +++S FL Q++ D+ P + Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAFLAQYFLGGVDRELPSEV 315 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 +++ ++ L + + G ++ I+ +G + + + A+ NA ++ +L+ Sbjct: 316 IVNVVNDDFPALIDAIEELRGREMVISHRVRGTRARWQQMAVTNAEQALAARLANRQHVA 375 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 K L P R+E YD SH G + V VV G G +K+ YR+FN+ V Sbjct: 376 SRFDALAKVLGLEDPPMRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VT 433 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD A M L RR+S++ E L PDV+++DGGKGQ+S A+ VL Sbjct: 434 AGDDYAAMHQALTRRYSRIKAGEGKL--------------PDVLLVDGGKGQMSMARDVL 479 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542 +L V + I ++ +AKG R AG E ++ L P L+ IQ++RDEAHRFAI Sbjct: 480 NELQVPDLI-LLGVAKGTTRKAGFETLYLNDAAHEFTLPGDSPALHLIQQIRDEAHRFAI 538 Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR K S L+ + G+GP R+R LL+ FG ++ +SR+S + +A GISKK+A Sbjct: 539 TGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAE 598 Query: 602 KIYNHFHKN 610 IY + H Sbjct: 599 SIYANLHSE 607 >gi|104782488|ref|YP_608986.1| excinuclease ABC subunit C [Pseudomonas entomophila L48] gi|122402746|sp|Q1I833|UVRC_PSEE4 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|95111475|emb|CAK16195.1| excinuclease ABC subunit C [Pseudomonas entomophila L48] Length = 607 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 211/609 (34%), Positives = 332/609 (54%), Gaps = 25/609 (4%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+M D R+LYVGKA NL+KR+ SY + ++ +I + T+T E E Sbjct: 17 RPGVYRMFDAEARLLYVGKAKNLKKRLASYFRKTGLAPKTAALVGRIAQVETTITANETE 76 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE +IK +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S Sbjct: 77 ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDGE-FPRLGIHRGAKKAKGRYFGPYPSA 135 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 A+ ++++ LQ+ F +R C DS + +RTRPCL +QIKRC GPC G ++ E+Y E V + Sbjct: 136 GAIRESLSLLQKAFSVRQCEDSYYANRTRPCLQYQIKRCKGPCVGLVTPEEYAEDVRHSV 195 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246 FL G + L ++ M +A + ++E A RD++A L +Q+ +D + Sbjct: 196 MFLEGRSQQLGNELNAEMEKAAMALNFEKAAELRDQIALLRRVQDQQYMEGGSGDVDVVA 255 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK---PCPENI 303 + N AC+ G+ G+ FF + E A++++ FL Q+Y P + Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVAEVMAAFLSQYYLGNAERELPGEL 315 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 +++ E+ + + G ++ I+ +G + + + A+ NA ++ +L+ Sbjct: 316 IVNVVHEDFDAITEAVQTLRGRELSISHRVRGTRARWQQLAVTNAEQALNARLANRQHMA 375 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 + + L +P+R+E YD SH G + V VV G G +K+ YR+FN+ V Sbjct: 376 ARFEALAQVLDLDEVPQRLECYDISHSSGEATVASCVVFGPEGPLKSDYRRFNIEG--VT 433 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD A M L+RR+ ++ E L PDV+++DGGKGQL+ A+ V+ Sbjct: 434 AGDDYAAMHQALQRRYGRIKDGEGKL--------------PDVLLVDGGKGQLNMARDVM 479 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542 ++L +T++ +AKG R AG E ++ L P L+ IQ++RDEAHRFAI Sbjct: 480 QELGF-GDLTLLGVAKGVTRKAGFETLYLNDVAHEFTLKGDSPALHLIQQIRDEAHRFAI 538 Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR KA S L+++ G+GP R+R LL+ FG ++ ++R+S + +A GISKK+A Sbjct: 539 TGHRARRGKARRTSSLEDVAGVGPKRRRDLLKHFGGLQELNRASIDEIAKAPGISKKLAE 598 Query: 602 KIYNHFHKN 610 IY H Sbjct: 599 SIYASLHSE 607 >gi|259418135|ref|ZP_05742054.1| excinuclease ABC, C subunit [Silicibacter sp. TrichCH4B] gi|259347041|gb|EEW58855.1| excinuclease ABC, C subunit [Silicibacter sp. TrichCH4B] Length = 630 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 260/610 (42%), Positives = 378/610 (61%), Gaps = 15/610 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+MLD RVLYVGKA NL+ R+ +Y HT RI MISQ + F Sbjct: 30 LKTLDSSPGVYRMLDHESRVLYVGKARNLRARVSNYTRP-GHTPRIEKMISQTTRMMFLT 88 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N+IK+LKP++N+LLRDDKSFP IL+ H P L KHR + +GSYF Sbjct: 89 TRTETEALLLEQNLIKQLKPKYNVLLRDDKSFPNILVGKNHAYPQLKKHRGARKEKGSYF 148 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPFAS AV +T+N LQ+ F LR+C+D++F +RTRPCL +QIKRCSGPC G IS + Y + Sbjct: 149 GPFASASAVNRTLNQLQKAFLLRNCSDTMFENRTRPCLQYQIKRCSGPCVGLISHDDYSD 208 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240 V +A++FL+G + ++E++ M A+ +YE A RDR+ AL+ +Q+ Sbjct: 209 SVRDAERFLAGRSTKIQEELGAQMMAASEAMEYERAAALRDRIKALTQVQSAQGINPRGV 268 Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 D L+ LAC+Q F QN G F+ + + + A+++ F+ QFY +K Sbjct: 269 AEADIIGLHLENGLACVQVFFIRANQNWGNQDFYPRVADDMSAAEVMEAFIGQFYDNKDV 328 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P ++LS++ E L+ + + G KV+I +P++GEK +++ A+ NA S ++++ Sbjct: 329 PRQLILSDDIENADLMAAALGDKAGRKVEILIPQRGEKTELVASAVRNARESLARRMAES 388 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + +L+ F L P RIE+YDNSHI G +AVG M+V+G GF+KN YRKFN+ Sbjct: 389 ATQAKLLRGIADAFGLEGPPNRIEVYDNSHIQGTNAVGGMIVMGPEGFMKNAYRKFNIRD 448 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD MM+ VL RRFS+L+K + + WPD++++DGG GQ+SA Sbjct: 449 GETIAGDDFGMMKAVLNRRFSRLLKED---------PDRQKGMWPDLLLIDGGAGQVSAV 499 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 ++++ V++ I +I +AKG R G E+F+ A L DP+LYFIQR+RDEAHR Sbjct: 500 AEIMEEHGVQD-IPMIGVAKGVDRDHGKEEFYRPGENAFALQRNDPVLYFIQRMRDEAHR 558 Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAI THR +R K+ +PLD I G+G RK+ LL FG+ K +SR++ L +++G+S Sbjct: 559 FAIGTHRAKRAKSLVANPLDGIPGVGARRKKALLTHFGSAKAVSRANLSDLKAVDGVSDA 618 Query: 599 IACKIYNHFH 608 +A IYN+F Sbjct: 619 LAETIYNYFQ 628 >gi|320324326|gb|EFW80405.1| excinuclease ABC subunit C [Pseudomonas syringae pv. glycinea str. B076] gi|320328551|gb|EFW84553.1| excinuclease ABC subunit C [Pseudomonas syringae pv. glycinea str. race 4] Length = 607 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 220/609 (36%), Positives = 334/609 (54%), Gaps = 25/609 (4%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+M D +LYVGKA NL+KR+ SY H + ++S+I I T+T E E Sbjct: 17 RPGVYRMFDAEATLLYVGKAKNLKKRLASYFRKTGHAPKTGALVSRIAQIETTITGNETE 76 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE +IK +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S Sbjct: 77 ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDG-NYPRLSIHRGAKKAKGRYFGPYPSA 135 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 A+ ++++ LQ+TF +R C DS F++RTRPCL +QIKRC GPC G + E Y E V + Sbjct: 136 GAIRESLSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSV 195 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246 FL G ++ L +++ M +A + D+E A RD++A L +Q+ +D + Sbjct: 196 MFLEGRSNALSDELNATMEKAAMALDFERAAELRDQVALLRRVQDQQSMDGGTGDVDVVA 255 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENI 303 + N AC+ G+ G+ FF + E +++S FL Q++ D+ P + Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAFLAQYFLGGIDRELPGEV 315 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 +++ ++ + + G ++ I+ +G + + + A+ NA ++ T +L+ Sbjct: 316 IVNVINDDFPAFVDAVEELRGVEMVISHRVRGTRARWQQMAVTNAEQALTARLANRQHVA 375 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 + K L P R+E YD SH G + V VV G G +K+ YR+FN+ V Sbjct: 376 SRFEALAKVLGLEDPPMRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VT 433 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD A M L RR+S++ E L PDV+++DGGKGQ+S A+ VL Sbjct: 434 AGDDYAAMHQALTRRYSRIKAGEGKL--------------PDVLLVDGGKGQMSMARDVL 479 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542 +L V + I ++ +AKG R AG E ++ L P L+ IQ++RDEAHRFAI Sbjct: 480 NELQVPDLI-LLGVAKGTTRKAGFETLYLNDAAHEFTLPGDSPALHLIQQIRDEAHRFAI 538 Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR K S L+ + G+GP R+R LL+ FG ++ +SR+S + +A GISKK+A Sbjct: 539 TGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAE 598 Query: 602 KIYNHFHKN 610 IY + H Sbjct: 599 SIYANLHSE 607 >gi|71733411|ref|YP_274534.1| excinuclease ABC subunit C [Pseudomonas syringae pv. phaseolicola 1448A] gi|92058693|sp|Q48J96|UVRC_PSE14 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|71553964|gb|AAZ33175.1| excinuclease ABC, C subunit [Pseudomonas syringae pv. phaseolicola 1448A] Length = 607 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 220/609 (36%), Positives = 334/609 (54%), Gaps = 25/609 (4%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+M D +LYVGKA NL+KR+ SY H + ++S+I I T+T E E Sbjct: 17 RPGVYRMFDAEATLLYVGKAKNLKKRLASYFRKTGHAPKTGALVSRIAQIETTITGNETE 76 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE +IK +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S Sbjct: 77 ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDG-NYPRLSIHRGAKKAKGRYFGPYPSA 135 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 A+ ++++ LQ+TF +R C DS F++RTRPCL +QIKRC GPC G + E Y E V + Sbjct: 136 GAIRESLSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSV 195 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246 FL G ++ L +++ M +A + D+E A RD++A L +Q+ +D + Sbjct: 196 MFLEGRSNALSDELNATMEKAAMALDFERAAELRDQVALLRRVQDQQSMDGATGDVDVVA 255 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENI 303 + N AC+ G+ G+ FF + E +++S FL Q++ D+ P + Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAFLAQYFLGGIDRELPGEV 315 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 +++ ++ + + G ++ I+ +G + + + A+ NA ++ T +L+ Sbjct: 316 IVNVINDDFPAFVDAVEELRGVEMVISHRVRGTRARWQQMAVTNAEQALTARLANRQHVA 375 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 + K L P R+E YD SH G + V VV G G +K+ YR+FN+ V Sbjct: 376 SRFEALAKVLGLEDPPMRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VT 433 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD A M L RR+S++ E L PDV+++DGGKGQ+S A+ VL Sbjct: 434 AGDDYAAMHQALTRRYSRIKAGEGKL--------------PDVLLVDGGKGQMSMARDVL 479 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542 +L V + I ++ +AKG R AG E ++ L P L+ IQ++RDEAHRFAI Sbjct: 480 NELQVPDLI-LLGVAKGTTRKAGFETLYLNDAAHEFTLPGDSPALHLIQQIRDEAHRFAI 538 Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR K S L+ + G+GP R+R LL+ FG ++ +SR+S + +A GISKK+A Sbjct: 539 TGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAE 598 Query: 602 KIYNHFHKN 610 IY + H Sbjct: 599 SIYANLHSE 607 >gi|289650302|ref|ZP_06481645.1| excinuclease ABC subunit C [Pseudomonas syringae pv. aesculi str. 2250] gi|330867008|gb|EGH01717.1| excinuclease ABC subunit C [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330890124|gb|EGH22785.1| excinuclease ABC subunit C [Pseudomonas syringae pv. mori str. 301020] Length = 607 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 220/609 (36%), Positives = 335/609 (55%), Gaps = 25/609 (4%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+M D +LYVGKA NL+KR+ SY H + ++S+I I T+T E E Sbjct: 17 RPGVYRMFDAEATLLYVGKAKNLKKRLASYFRKTGHAPKTGALVSRIAQIETTITGNETE 76 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE +IK +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S Sbjct: 77 ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDG-NYPRLSIHRGAKKAKGRYFGPYPSA 135 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 A+ ++++ LQ+TF +R C DS F++RTRPCL +QIKRC GPC G + E Y E V + Sbjct: 136 GAIRESLSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSV 195 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246 FL G ++ L +++ +M +A + D+E A RD++A L +Q+ +D + Sbjct: 196 MFLEGRSNALSDELNASMEKAAMALDFERAAELRDQVALLRRVQDQQSMDGGTGDVDVVA 255 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENI 303 + N AC+ G+ G+ FF + E +++S FL Q++ D+ P + Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAFLAQYFLGGIDRELPGEV 315 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 +++ ++ + + G ++ I+ +G + + + A+ NA ++ T +L+ Sbjct: 316 IVNVINDDFPAFVDAVEELRGVEMVISHRVRGTRARWQQMAVTNAEQALTARLANRQHVA 375 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 + K L P R+E YD SH G + V VV G G +K+ YR+FN+ V Sbjct: 376 SRFEALAKVLGLEDPPMRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VT 433 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD A M L RR+S++ E L PDV+++DGGKGQ+S A+ VL Sbjct: 434 AGDDYAAMHQALTRRYSRIKAGEGKL--------------PDVLLVDGGKGQMSMARDVL 479 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542 +L V + I ++ +AKG R AG E ++ L P L+ IQ++RDEAHRFAI Sbjct: 480 NELQVPDLI-LLGVAKGTTRKAGFETLYLNDAAHEFTLPGDSPALHLIQQIRDEAHRFAI 538 Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR K S L+ + G+GP R+R LL+ FG ++ +SR+S + +A GISKK+A Sbjct: 539 TGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAE 598 Query: 602 KIYNHFHKN 610 IY + H Sbjct: 599 SIYANLHSE 607 >gi|213970620|ref|ZP_03398746.1| excinuclease ABC, C subunit [Pseudomonas syringae pv. tomato T1] gi|301386327|ref|ZP_07234745.1| excinuclease ABC subunit C [Pseudomonas syringae pv. tomato Max13] gi|302060908|ref|ZP_07252449.1| excinuclease ABC subunit C [Pseudomonas syringae pv. tomato K40] gi|302133961|ref|ZP_07259951.1| excinuclease ABC subunit C [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213924617|gb|EEB58186.1| excinuclease ABC, C subunit [Pseudomonas syringae pv. tomato T1] Length = 607 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 218/609 (35%), Positives = 332/609 (54%), Gaps = 25/609 (4%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+M D +LYVGKA NL+KR+ SY H + ++++I I T+T E E Sbjct: 17 RPGVYRMFDADATLLYVGKAKNLKKRLASYFRKTGHAPKTGALVARIAQIETTITNNETE 76 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE +IK +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S Sbjct: 77 ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDG-TYPRLSIHRGAKKAKGRYFGPYPSA 135 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 A+ ++++ LQ+TF +R C DS F++R RPCL +QIKRC GPC G + E Y E V + Sbjct: 136 GAIRESLSLLQKTFQVRQCEDSFFKNRNRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSV 195 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246 FL G ++ L +++ +M +A + +E A RD++A L +Q+ +D + Sbjct: 196 MFLEGRSNALSDELNASMEKAAMALHFERAAELRDQVALLRRVQDQQSMDGGTGDVDVVA 255 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENI 303 + N AC+ G+ G+ FF + E +++S FL Q++ D+ P + Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAFLAQYFLGGVDRELPSEV 315 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 +++ E+ L + + G ++ I+ +G + + + A+ NA ++ +L+ Sbjct: 316 IVNVVNEDFPALIDAIEESRGREMTISHRVRGTRARWQQLAVTNAEQALAARLANRQHVA 375 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 + L P R+E YD SH G + V VV G G +K+ YR+FN+ V Sbjct: 376 SRFEALAVVLNLDEPPMRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VT 433 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD A M L RR+S++ E L PDV+++DGGKGQ+S A+ VL Sbjct: 434 AGDDYAAMHQALTRRYSRIKAGEGKL--------------PDVLLVDGGKGQMSMARDVL 479 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542 +L V + I ++ +AKG R AG E ++ L P L+ IQ++RDEAHRFAI Sbjct: 480 NELQVPDLI-LLGVAKGTTRKAGFETLYLNDAAHEFTLPGDSPALHLIQQIRDEAHRFAI 538 Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR K S L+ I G+GP R+R LL+ FG ++ +SR+S + +A GISKK+A Sbjct: 539 TGHRARRGKTRRTSTLEGIAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAE 598 Query: 602 KIYNHFHKN 610 IY + H Sbjct: 599 SIYANLHSE 607 >gi|224826429|ref|ZP_03699531.1| excinuclease ABC, C subunit [Lutiella nitroferrum 2002] gi|224601530|gb|EEG07711.1| excinuclease ABC, C subunit [Lutiella nitroferrum 2002] Length = 601 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 229/609 (37%), Positives = 328/609 (53%), Gaps = 27/609 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+MLD AG+VLYVGKA +L+KR+ SY N+ + RI M+ QI I TVT Sbjct: 15 HLPNLPGVYRMLDAAGKVLYVGKAIDLKKRVSSYFQKNDLSPRIQLMVRQIAAIETTVTR 74 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EAL+LE N+IK L PR+NIL RDDKS+PY++++ H P L R YFGP Sbjct: 75 SEAEALILENNLIKALAPRYNILFRDDKSYPYLMLS-AHAYPQLAYFRGDPKKPHQYFGP 133 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + + AV ++I LQ+ F LR+C D+VF +R+RPCLL+QIKRCSGPC I Y V Sbjct: 134 YPNSYAVRESIQILQKVFRLRTCEDAVFANRSRPCLLYQIKRCSGPCVEHIDEAAYRADV 193 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241 A FL G + L + + M A+ ++E A RD++ ALS +Q + Sbjct: 194 ANAVAFLQGKQNELIDSLTERMLAASEAMEFEQAAALRDQIQALSRVQEKQFVSSNVSHD 253 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D ++ + + C+ G++ G +FF S + L FL Q Y P P Sbjct: 254 ADVVAVAEQQGVVCVNLVMVRGGRHLGDKSFFPLNSEGSDASANLEAFLAQHYLGAPLPP 313 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 I+++ T L +Q ++ I GE+R +E A NA + QKL++ + Sbjct: 314 VIIVNGAISPT--LRDYLEQQAERRLAIVGNPIGERRVWLEMAEKNAQLAIQQKLASHAT 371 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 L + L + R+E +D SH +G + V VV ++YR++N+ Sbjct: 372 QSQRLARLNEVLELEGVE-RLECFDISHTLGEATVASCVVYDRGDMQPSEYRRYNITTA- 429 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 K DD MR VL RR+S+L + E L PDVV++DGGKGQ+ A Sbjct: 430 -KAGDDYGAMREVLTRRYSKLAEGEGKL--------------PDVVLIDGGKGQVGVALE 474 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYFIQRLRDEAHRF 540 V + + + I+ +AKG +R G+E + + L L P L+ IQ +RDEAHRF Sbjct: 475 VFADIGL--NLPIVGVAKGEERKPGLETLILPYREKTLQLPHDHPALHLIQTVRDEAHRF 532 Query: 541 AITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AIT HR RR KA S L+EING+G R++ LL FG ++ + +S + LA +EGIS+ + Sbjct: 533 AITGHRARRGKARTASSLEEINGVGAKRRQRLLTRFGGLRGVMAASIDDLAQVEGISQTL 592 Query: 600 ACKIYNHFH 608 A KIYN H Sbjct: 593 AEKIYNALH 601 >gi|114798753|ref|YP_761643.1| excinuclease ABC subunit C [Hyphomonas neptunium ATCC 15444] gi|119367659|sp|Q0BY00|UVRC_HYPNA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|114738927|gb|ABI77052.1| excinuclease ABC, C subunit [Hyphomonas neptunium ATCC 15444] Length = 614 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 262/612 (42%), Positives = 384/612 (62%), Gaps = 14/612 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + + +P PGVY+M AG VLYVGKA +L+ R+ +Y HT RI MIS + F Sbjct: 10 NLKHLPSRPGVYRMFGEAGEVLYVGKARDLKARVSNYTRMGGHTQRIARMISLTRAMEFV 69 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT TE EALLLEA+++K LKPRFN+LLRDDKSFPYILI H+ P + K+R S +G Y Sbjct: 70 VTETETEALLLEASLVKSLKPRFNVLLRDDKSFPYILIRRNHEAPQIKKYRGSKQDEGDY 129 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPFA+ AV +T+++LQ+ F LR+C DSV+ RTRPC+L QIKRC+ PC G +S E Y Sbjct: 130 FGPFANAGAVMRTLDTLQKAFLLRTCEDSVYSARTRPCMLHQIKRCAAPCVGLVSKEDYT 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 EA FL G L++++A M A+ ++E+A RDR+ A++H+++ D + Sbjct: 190 ALADEAADFLRGKAGELQKRLASEMEAASEAMEFETAARLRDRIRAIAHVRSTQDVNPDG 249 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F++ + ++C+Q F GQN G F + + + T +IL+ FL QFY +P Sbjct: 250 IEEADVFAIAMDGGVSCVQVFFIRAGQNWGASAHFPRHEKDQTAPEILAAFLVQFYDKRP 309 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P+ IL+SE ++ L+E + + G ++++ P++G KR ++ QA NA + ++KL+ Sbjct: 310 PPKLILVSEPPDQADLIEEALALKAGRRIELRRPERGTKRDLLTQAERNASEALSRKLAE 369 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 S + +L + K F L P+RIE+YDNSHI G +AVG M+V G GF K YRKFN+ Sbjct: 370 SASQERLLTEVQKVFDLAEAPQRIEVYDNSHIQGTNAVGGMIVAGPEGFRKQAYRKFNIK 429 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 ++ DD MMR V+ RRF++ +K + + WPD+V++DGG GQL+A Sbjct: 430 DTEITPGDDYGMMREVMRRRFARAMKEK---------VAGNVSDWPDLVLIDGGLGQLNA 480 Query: 479 AQGVLKKLNV-ENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 L +L + + +T++SIAKG R+AG E+FF L P+LY++QRLRDEA Sbjct: 481 TLETLAELGLTPDDVTLVSIAKGVDRNAGREQFFRPGKAPFKLPENAPVLYYLQRLRDEA 540 Query: 538 HRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HR+AI HR++R +AA SPLDEI GIGP RK+ LL FG+ + +SR+ L ++G++ Sbjct: 541 HRWAIGAHRQKRAAEAARSPLDEIEGIGPTRKKALLHHFGSARGVSRAKVADLMEVDGVN 600 Query: 597 KKIACKIYNHFH 608 + +A +IY HF+ Sbjct: 601 EALAIRIYGHFN 612 >gi|288958390|ref|YP_003448731.1| excinuclease ABC subunit C [Azospirillum sp. B510] gi|288910698|dbj|BAI72187.1| excinuclease ABC subunit C [Azospirillum sp. B510] Length = 659 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 272/613 (44%), Positives = 383/613 (62%), Gaps = 16/613 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P+ PGVY+ML G VLYVGKA NL++R+ +Y R+ M+++ + F Sbjct: 57 LKTLPQTPGVYRMLAGDGAVLYVGKARNLKRRVTNYTQVGKLPVRLQRMVAETETMEFVN 116 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TEVEALLLE+N+IK+L PR+N+LLRDDK+FP+I+IT H P L KHR + YF Sbjct: 117 THTEVEALLLESNLIKKLMPRYNVLLRDDKTFPHIMITRDHDYPQLTKHRGARGRDADYF 176 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPFAS AV +TI +LQR F LR+CAD+VF RTRPCL +QIKRC+ PC +S +Y Sbjct: 177 GPFASAGAVNRTITALQRAFLLRNCADTVFASRTRPCLQYQIKRCTAPCVERVSPAEYRA 236 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---- 238 V +A+ FLSG + +++ + A M A+ D+E+A +RDR+ AL+ IQ H D Sbjct: 237 QVDQARAFLSGKSRDIQTEFAERMMAASDAMDFETAARYRDRIRALTAIQAHQDINVEGV 296 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D + Y C+Q FF G+N G +F D + ++L+ F+ QFY +K Sbjct: 297 VEDADVIAAYAEGGTTCVQVFFFRGGRNYGNRAYFPSHDKVAETEEVLAAFIAQFYENKA 356 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P +L+S E LL + + G+KV++ PK+GEKR+++E ALINA +H ++L+ Sbjct: 357 APPLVLVSHALPELELLTEALAIRAGHKVELAEPKRGEKRRLVEHALINAREAHGRRLAE 416 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 S +L+ F + P+R+E+YDNSHI G A+G M+V G +GF+KN YRKFN+ Sbjct: 417 SSSQARLLEGVAAAFGMDSAPERVEVYDNSHIQGAHAIGAMIVAGPDGFIKNAYRKFNIR 476 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 DD AMMR VL RRF + +K + E S SWPD+V++DGG GQL+ Sbjct: 477 SEGAAG-DDFAMMREVLTRRFGRAVKED---------PERSLGSWPDLVLIDGGIGQLNV 526 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A V +L +++ +T++ IAKGP R AG E F ++ + RDP+LYF+QRLRDEAH Sbjct: 527 ALEVFAELGIDD-VTLVGIAKGPDRDAGREHFLMENRPPFQMEPRDPVLYFLQRLRDEAH 585 Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAI THR +R KA SP+DEI GIGP RK+ LL FG+ +SR+ L ++EGI++ Sbjct: 586 RFAIGTHRAKRTKAIGKSPIDEIAGIGPARKKALLHHFGSGAAVSRAGLADLEAVEGINR 645 Query: 598 KIACKIYNHFHKN 610 +A KIY+HFH + Sbjct: 646 AVAKKIYDHFHPD 658 >gi|330503310|ref|YP_004380179.1| excinuclease ABC subunit C [Pseudomonas mendocina NK-01] gi|328917596|gb|AEB58427.1| excinuclease ABC subunit C [Pseudomonas mendocina NK-01] Length = 607 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 221/609 (36%), Positives = 336/609 (55%), Gaps = 25/609 (4%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+M D GR+LYVGKA NL+KR+ SY + ++++I I T+T E E Sbjct: 17 RPGVYRMFDGEGRLLYVGKAKNLKKRLSSYFRKTGQAPKTAALVARIAQIETTITANETE 76 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE +IK +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S Sbjct: 77 ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDGE-FPRLGIHRGAKKAKGRYFGPYPSA 135 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 A+ ++++ LQ+TF +R C DS +++RTRPCL +QIKRC GPC G +S E+Y E V + Sbjct: 136 LAIRESLSLLQKTFLVRQCEDSYYKNRTRPCLQYQIKRCKGPCVGLVSPEEYAEDVRHSV 195 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLY 248 FL G ++ L E+++ +M +A++ ++E A RD++A L +Q+ D + Sbjct: 196 MFLDGRSNALSEELSASMEKASMALEFERAAELRDQIAMLRRVQDQQSMEGGTGDVDVVA 255 Query: 249 HN--KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK---PCPENI 303 AC+ G+ G+ FF + E +L FL Q+Y P + Sbjct: 256 VMLTPGGACVHLISVRGGRVLGSKNFFPQVAIEEEGGDVLMAFLAQYYLGNAERDLPSEL 315 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 +++ + E+ L + G + I++ +G + + + A+ NA ++ +L+ Sbjct: 316 IVNVQHEDFPTLIEAIESLRGRSISISLRVRGTRARWQQLAVTNAEQALAARLANRQHLA 375 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 + + P+R+E +D SH G + V VV G G +K+ YR+FN+ V Sbjct: 376 ERFEALATVLEMDEPPQRMECFDISHSSGEATVASCVVFGPEGPLKSDYRRFNIEG--VT 433 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD A M L RRFS++ E L PDV+++DGGKGQL+ A+ VL Sbjct: 434 AGDDYAAMHQALTRRFSKIKDGEGKL--------------PDVLLVDGGKGQLAMAREVL 479 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAI 542 ++L V + I ++ +AKG R G+E ++ E L P L+ IQ++RDE+HRFAI Sbjct: 480 QELAVPDLI-LLGVAKGTTRKPGLEVLYLNDAEHEFTLPGNSPALHLIQQIRDESHRFAI 538 Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR KA S L+E+ GIGP R+R LL FG ++ +SR+S E +A GISKK+A Sbjct: 539 TGHRARRGKARRTSTLEEVAGIGPKRRRELLNHFGGLQELSRASAEEIAKAPGISKKLAE 598 Query: 602 KIYNHFHKN 610 IY+ H Sbjct: 599 LIYDTLHSE 607 >gi|330988831|gb|EGH86934.1| excinuclease ABC subunit C [Pseudomonas syringae pv. lachrymans str. M301315] gi|331008144|gb|EGH88201.1| excinuclease ABC subunit C [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 607 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 220/609 (36%), Positives = 336/609 (55%), Gaps = 25/609 (4%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+M D ++LYVGKA NL+KR+ SY H + ++S+I I T+T E E Sbjct: 17 RPGVYRMFDAEAKLLYVGKAKNLKKRLASYFRKTGHAPKTGALVSRIAQIETTITGNETE 76 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE +IK +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S Sbjct: 77 ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDG-NYPRLSIHRGTKKAKGRYFGPYPSA 135 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 A+ ++++ LQ+TF +R C DS F++RTRPCL +QIKRC GPC G + E Y E V + Sbjct: 136 GAIRESLSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSV 195 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246 FL G ++ L +++ +M +A + D+E A RD++A L +Q+ +D + Sbjct: 196 MFLEGRSNALSDELNASMEKAAMALDFERAAELRDQVALLRRVQDQQSMDGGTGDVDVVA 255 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENI 303 + N AC+ G+ G+ FF + E +++S FL Q++ D+ P + Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAFLAQYFLGGIDRELPGEV 315 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 +++ ++ + + G ++ I+ +G + + + A+ NA ++ T +L+ Sbjct: 316 IVNVINDDFPAFVDAVEELRGVELVISHRVRGTRARWQQMAVTNAEQALTARLANRQHVA 375 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 + K L P R+E YD SH G + V VV G G +K+ YR+FN+ V Sbjct: 376 SRFEALAKVLGLEDPPMRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VT 433 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD A M L RR+S++ E L PDV+++DGGKGQ+S A+ VL Sbjct: 434 AGDDYAAMHQALTRRYSRIKAGEGKL--------------PDVLLVDGGKGQMSMARDVL 479 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542 +L V + I ++ +AKG R AG E ++ L P L+ IQ++RDEAHRFAI Sbjct: 480 NELQVPDLI-LLGVAKGTTRKAGFETLYLNDAAHEFTLPGDSPALHLIQQIRDEAHRFAI 538 Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR K S L+ + G+GP R+R LL+ FG ++ +SR+S + +A GISKK+A Sbjct: 539 TGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAE 598 Query: 602 KIYNHFHKN 610 IY + H Sbjct: 599 SIYANLHSE 607 >gi|94496331|ref|ZP_01302908.1| excinuclease ABC, C subunit [Sphingomonas sp. SKA58] gi|94424077|gb|EAT09101.1| excinuclease ABC, C subunit [Sphingomonas sp. SKA58] Length = 637 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 262/611 (42%), Positives = 370/611 (60%), Gaps = 16/611 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PGVY+M D G VLYVGKA L+ R+ +Y + R+ M++Q ++ Sbjct: 37 LKTLPIRPGVYRMHDARGDVLYVGKARALKNRVANYTQVDRLPKRLQRMVAQTRSMTIVT 96 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EALLLEA +IKR +P +N+LLRDDKSFP+IL+ D H P + KHR + QG Y+ Sbjct: 97 TNSEAEALLLEAQLIKRYRPPYNVLLRDDKSFPFILLRDDHAFPRVQKHRGARKYQGRYY 156 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPFAS +V +TIN+LQ+ F LRSC DS F +R+RPCLL+QIKRCS PC I Y E Sbjct: 157 GPFASAGSVTRTINALQKLFLLRSCTDSFFANRSRPCLLYQIKRCSAPCVDRIDEAGYAE 216 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---Y 239 V +A+ FL G + +++K+ M QA+ D+E A + RDRL AL+ IQ Sbjct: 217 LVRDAQDFLGGKSTAVQKKLGAAMQQASDAMDFEQAAVIRDRLKALTFIQGSQAINAEGL 276 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 D F+L CIQ F GQN G +FF ++ ++L F+ QFY + P Sbjct: 277 GDADIFALAEKGGAMCIQAFFIRGGQNWGHRSFFPVHTADVATEEVLESFMAQFYEEVPP 336 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P IL + E L+ ++ ++ G KV+I VP++GE+ ++I+QA NA + ++L+ Sbjct: 337 PRLILADRQPAECELMALALSERAGGKVRIEVPQRGERTRLIKQAQRNAVEALDRRLAET 396 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 S IL + + F L +P RIEIYDNSHI G A+G MVV G GF KN YRKFN+ Sbjct: 397 TSQGRILDEMVETFGLEGVPDRIEIYDNSHIQGAHALGAMVVAGPEGFRKNAYRKFNMKN 456 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 ++ + DD AMMR + ERRF + + + + WPD+V++DGGKGQLSAA Sbjct: 457 PEI-SNDDFAMMREMFERRFGRAARED---------PDRDSGEWPDLVLIDGGKGQLSAA 506 Query: 480 QGVLKKLNVENRITIISIAKGPKR-SAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 +G+L+ L +E+ + +I +AKGP G E F + G + + P+L+++QRLRDEAH Sbjct: 507 RGILEDLGIED-VCMIGVAKGPHHGREGREVFHLMDGREITFPLNHPVLFYLQRLRDEAH 565 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAI HR +R KA S LDE+ GIGP RK+ LL FGT + + ++ E LA G+SK Sbjct: 566 RFAIGAHRAKRSKAITVSSLDEVPGIGPARKKALLMHFGTARAVRDAALEDLAKAPGVSK 625 Query: 598 KIACKIYNHFH 608 +A ++Y+ FH Sbjct: 626 AVAQQVYDFFH 636 >gi|163738849|ref|ZP_02146262.1| excinuclease ABC subunit C [Phaeobacter gallaeciensis BS107] gi|161387654|gb|EDQ12010.1| excinuclease ABC subunit C [Phaeobacter gallaeciensis BS107] Length = 629 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 261/610 (42%), Positives = 381/610 (62%), Gaps = 15/610 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+MLD RVLYVGKA NL+ R+ +Y H+ RI MI+ ++ F Sbjct: 28 LKTLDSSPGVYRMLDSESRVLYVGKARNLRARVSNY-SRPGHSPRIERMIAATASMMFLT 86 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N+IK+LKP++N+LLRDDKSFP IL+ H P + KHR + +GSYF Sbjct: 87 TRTETEALLLEQNLIKQLKPKYNVLLRDDKSFPNILVAKDHAFPQIKKHRGTRREKGSYF 146 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPFAS AV +T+N LQ+ F LR+C +++F RTRPCL +QIKRC+ PCTGEIS+E Y Sbjct: 147 GPFASAGAVNRTLNQLQKAFLLRNCTNAMFESRTRPCLQYQIKRCTAPCTGEISAEDYAS 206 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240 V +A++FLSG + ++E++A M A+ ++E A RDR+ AL+ +Q Sbjct: 207 SVRDAERFLSGRSTKIQEELAEQMAAASEAMEFERAAALRDRIKALTQVQTSQGINPRGV 266 Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 D L+ + AC+Q F QN G F+ + + + + A+++ F+ QFY +K Sbjct: 267 AEADVIGLHLDSGQACVQVFFIRANQNWGNQDFYPRINGDVSPAEVMEAFIGQFYDNKEP 326 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P ++LS+E E L+E + + G +V+I VP++GEK +++ A+ NA S ++++ Sbjct: 327 PRQLILSDEIENGDLMEQALSDKAGRRVEILVPQRGEKTELVAGAVRNARESLARRMAES 386 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + +L+ + F L P+RIE+YDNSHI G AVG M+V G GF+KN YRKFN+ Sbjct: 387 ATQAKLLRGVAEAFGLEGPPQRIEVYDNSHIQGSHAVGGMIVAGPEGFMKNAYRKFNIRG 446 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 +D+ DD MM+ VL RRFS+L+K + + WPD++++DGG GQ+SA Sbjct: 447 DDLTPGDDFGMMKEVLNRRFSRLLKED---------PDREKGLWPDLLLIDGGAGQVSAV 497 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 ++ + V++ I +I +AKG R G E+F A L DP+LYF+QR+RDEAHR Sbjct: 498 AEIMAEHGVQD-IPMIGVAKGVDRDHGKEEFHRLGAPAFALQRNDPVLYFVQRMRDEAHR 556 Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAI THR +R KA +PLDE+ G+G RKR LL FG+ K +SR++ L ++EG+S Sbjct: 557 FAIGTHRAKRAKAMGATPLDEVPGVGAARKRALLAHFGSAKAVSRANLSDLKAVEGVSAA 616 Query: 599 IACKIYNHFH 608 +A +IY+ FH Sbjct: 617 LAQRIYDFFH 626 >gi|291613959|ref|YP_003524116.1| excinuclease ABC, C subunit [Sideroxydans lithotrophicus ES-1] gi|291584071|gb|ADE11729.1| excinuclease ABC, C subunit [Sideroxydans lithotrophicus ES-1] Length = 602 Score = 558 bits (1438), Expect = e-156, Method: Composition-based stats. Identities = 236/609 (38%), Positives = 335/609 (55%), Gaps = 25/609 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+MLD AG+VLYVGKA L+KR+ SY +N + RI M+S I I TVT Sbjct: 14 SLPLQPGVYRMLDEAGQVLYVGKANQLKKRVGSYFQQSNLSPRIRLMVSHIARIEVTVTR 73 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK LKPR+NIL RDDKS+PYI++T P L +R ++ + YFGP Sbjct: 74 SEAEALLLENNLIKSLKPRYNILFRDDKSYPYIVLTGS-PSPRLTYYRGATDKRNQYFGP 132 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + + A +++IN LQ+ F LR+C + VF +RTRPCLL QI RCS PC G IS+E Y V Sbjct: 133 YPNAQAAKESINLLQKVFRLRTCEEGVFNNRTRPCLLHQIHRCSAPCVGLISAEDYATDV 192 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 A L G +++++ M QA YE A RD+L AL +Q R Sbjct: 193 RNAGLLLQGKFDEVEKRLREAMEQAAEAMHYEHAAALRDQLQALHTVQQKQFVESGRDTD 252 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D ++ + C+ G++ G FF + +A++L FL Q Y + P Sbjct: 253 ADIVAVVEAEGAICLNLAVVRGGRHLGDKPFFPQNVQGQDSAEVLEAFLAQHYLESNVPS 312 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 I+ S E + +L E +Q G+KV+I GE+R+ +E A NA + Q+ + Sbjct: 313 LIITSAEISDETL-EALLSEQAGHKVQIRHAVTGERRQWLEMAQGNALLALRQQAGLQAG 371 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 + L+ +LP + RIE +D SH MG + V VV + +YR++N+ Sbjct: 372 QALRLEALRTALSLPDLK-RIECFDISHTMGEATVASCVVYDDLAIRPQEYRRYNI--GG 428 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 + DD A MR L+RR+ +L E PD++++DGG GQL A Sbjct: 429 ITPGDDYAAMRQALQRRYQKLQAGE--------------GKRPDLILIDGGAGQLGMAVE 474 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRF 540 V+ + + + I +I +AKG +R G E+ E L L P L+ IQ++RDEAHRF Sbjct: 475 VMAEFGLSD-IALIGVAKGVERKPGKEQLLRPGAEKPLQLTPDSPALHLIQQVRDEAHRF 533 Query: 541 AITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI+ HR RR KA S L++I G+G R+R LL FG +K + ++S E LA +EGIS + Sbjct: 534 AISGHRARRGKARTTSSLEDIEGVGEKRRRNLLTHFGGLKGVQQASIEELARVEGISPLL 593 Query: 600 ACKIYNHFH 608 A KIY H H Sbjct: 594 AEKIYQHLH 602 >gi|329895078|ref|ZP_08270823.1| Excinuclease ABC subunit C [gamma proteobacterium IMCC3088] gi|328922523|gb|EGG29861.1| Excinuclease ABC subunit C [gamma proteobacterium IMCC3088] Length = 606 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 222/612 (36%), Positives = 338/612 (55%), Gaps = 23/612 (3%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 +Q+ + PGVYQML G +LYVGKA NL+ R+ SY ++ T + ++++I +I+ TV Sbjct: 8 LKQLTQRPGVYQMLGSEGEILYVGKAKNLKARVSSYFRASGLTTKTMALVAKIVDIQVTV 67 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TEV+ALLLE N+IK KP +NILL+DDKS+PYI ++ + P L HR S +G YF Sbjct: 68 TSTEVDALLLEHNLIKEHKPPYNILLKDDKSYPYIFLSTQDTFPRLAFHRGSKRKKGQYF 127 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYM 181 GP+ S AV ++++ LQ+TF +R C D+ FR+R+RPCL QI RC+GPC ++ E+Y Sbjct: 128 GPYPSSGAVRESLHFLQKTFRVRQCEDAYFRNRSRPCLQHQIGRCTGPCVPGFVTEEEYA 187 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 E V + FL G + L K+A +M + ++E A + RD+L + +Q+ Sbjct: 188 EQVESTRLFLQGKSQELMAKLADDMEACAERLEFEKAAVLRDQLGHIQQVQSSQGIEGVR 247 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--TDK 297 +D + AC+ F G+ G+ +++ + T A LS F+ Q+Y ++ Sbjct: 248 GDLDIIACATRHGKACVHVLFVREGRVIGSRSYYPALAIDDTEASTLSAFVLQYYLANER 307 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P P+ +++S E +E L ++ KV + + + + ++ A+ A + L Sbjct: 308 PVPQEVIVSHELDEVQALNELLTQRAKVKVSVKHRVREARARWLQLAVQTADTNLMAHLE 367 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + + + L K L P+RIE +D SH G V VV G +G K+ YRKFN+ Sbjct: 368 AKETTRARLLALQKAAQLGAFPERIECFDISHSSGAQTVASCVVFGVDGAKKSDYRKFNI 427 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + DD A M+ LERRF +L E PDV+++DGGKGQ+S Sbjct: 428 EG--ITGGDDYAAMQQALERRFKRLKNGE--------------GVKPDVLLIDGGKGQVS 471 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLRDE 536 A GVL+ L +E+ I +I +AKG R AG E G+ L DP L+ IQ +RDE Sbjct: 472 QAMGVLEALQIED-IVVIGVAKGTTRKAGFETLINGATGKEWQLQSDDPALHLIQYIRDE 530 Query: 537 AHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 +HRFAIT HR RR K S L+ I G+G R+R LL+ FG+ + + ++ E L + GI+ Sbjct: 531 SHRFAITGHRARRAKQHQSALESIPGVGAKRRRDLLRHFGSAQGVKGANIEELIKVPGIN 590 Query: 597 KKIACKIYNHFH 608 + +A +I H Sbjct: 591 RALAEQIVEHLQ 602 >gi|146307397|ref|YP_001187862.1| excinuclease ABC subunit C [Pseudomonas mendocina ymp] gi|189038075|sp|A4XUW4|UVRC_PSEMY RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|145575598|gb|ABP85130.1| Excinuclease ABC subunit C [Pseudomonas mendocina ymp] Length = 607 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 220/609 (36%), Positives = 336/609 (55%), Gaps = 25/609 (4%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+M D R+LYVGKA NL+KR+ SY + ++++I + T+T E E Sbjct: 17 RPGVYRMFDADARLLYVGKAKNLKKRLSSYFRKTGQAPKTAALVARIAQVETTITANETE 76 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE +IK +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S Sbjct: 77 ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDGE-FPRLGIHRGAKKAKGRYFGPYPSA 135 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 A+ ++++ LQ+TF +R C DS +R+RTRPCL +QIKRC GPC G +S E+Y E V + Sbjct: 136 LAIRESLSLLQKTFLVRQCEDSYYRNRTRPCLQYQIKRCKGPCVGLVSPEEYAEDVRHSV 195 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLY 248 FL G ++ L E+++ +M +A++ ++E A RD+++ L +Q+ D + Sbjct: 196 MFLEGRSNALSEELSASMEKASMALEFERAAELRDQISMLRRVQDQQSMEGGSGDVDVVA 255 Query: 249 HN--KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK---PCPENI 303 AC+ G+ G+ FF + E ++L FL Q+Y P + Sbjct: 256 VMLNPGGACVHLISVRGGRVLGSKNFFPQVAIEEEGGEVLMAFLAQYYLGNAERDLPSEL 315 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 +++ + E+ S L + G + I++ +G + + + A+ NA ++ +L+ Sbjct: 316 IVNVQHEDFSTLIEAVESLRGRSLSISLRVRGTRARWQQLAVTNAEQALAARLANRQHLA 375 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 + + P+R+E +D SH G + V VV G G +K+ YR+FN+ V Sbjct: 376 ERFEALATVLEMDEPPQRMECFDISHSSGEATVASCVVFGPEGPLKSDYRRFNIEG--VT 433 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD A M L RRFS++ E L PDV+++DGGKGQL+ A+ VL Sbjct: 434 PGDDYAAMHQALTRRFSKIKDGEGKL--------------PDVLLVDGGKGQLAMAREVL 479 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAI 542 ++L V + I ++ +AKG R G+E ++ E L P L+ IQ++RDE+HRFAI Sbjct: 480 QELAVPDLI-LLGVAKGTTRKPGLEVLYLNDAEHEFTLPGNSPALHLIQQIRDESHRFAI 538 Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR KA S L+E+ GIGP R+R LL FG ++ +SR+S E +A GISKK+A Sbjct: 539 TGHRARRGKARRTSTLEEVAGIGPKRRRELLNHFGGLQELSRASAEEIAKAPGISKKLAE 598 Query: 602 KIYNHFHKN 610 IY H Sbjct: 599 LIYATLHSE 607 >gi|85716039|ref|ZP_01047016.1| excinuclease ABC subunit C [Nitrobacter sp. Nb-311A] gi|85697237|gb|EAQ35118.1| excinuclease ABC subunit C [Nitrobacter sp. Nb-311A] Length = 693 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 291/607 (47%), Positives = 383/607 (63%), Gaps = 6/607 (0%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 P PGVY+M++ A VLYVGKA N++KR+ SY RI MI+ + T TE Sbjct: 84 PTSPGVYRMMNAACDVLYVGKAKNVRKRLSSYARPTGQVMRIARMIAATAAVEIVSTETE 143 Query: 67 VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126 EALLLEAN+IK+L+PRFN+ LRDDKSFPYILIT H P + KHR + + G YFGPFA Sbjct: 144 TEALLLEANLIKQLRPRFNVQLRDDKSFPYILITGDHWAPQILKHRGAQSRPGRYFGPFA 203 Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186 S AV +TI +LQR F +RSC DS F RTRPCLL+QIKRC+GPCTGEI Y V E Sbjct: 204 SAGAVGRTITALQRAFLVRSCTDSFFESRTRPCLLYQIKRCAGPCTGEIDFPGYTALVRE 263 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMD 243 A FLSG + +KE +AR M +A+ +E A ++RDRLAALS IQ+ D Sbjct: 264 ATDFLSGRSRAVKEDLARAMERASADLAFERAALYRDRLAALSAIQSQQGINPRTVEEAD 323 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303 F+++ C++ FF GQN G +F + + T ++L FL QFY DKP P I Sbjct: 324 VFAIHQEGGYFCVEVFFFRTGQNWGNRAYFPRAEKSFTPEEVLGSFLAQFYDDKPPPGLI 383 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 LLS EE LL + + G++VK+ VP++GEK++++ AL NA + +KL+ + Sbjct: 384 LLSHPIEEGELLADALSIKAGHRVKVLVPQRGEKKELVAHALTNAREALGRKLAETATQS 443 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 +L+ LP P+RIE+YDNSHI G +AVG M+V G GF+KNQYRKFN+ + Sbjct: 444 RLLQGLAAVLGLPRTPRRIEVYDNSHIQGANAVGAMIVAGPEGFLKNQYRKFNIKSESLT 503 Query: 424 TQDDCAMMRMVLERRFSQLIKNE-ENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD AMMR VLERRF +L+ + + + ++ S P WPD+VI+DGG GQL+AA GV Sbjct: 504 PGDDYAMMREVLERRFKRLLAQKSADPYPVAESEKDSVPQWPDLVIIDGGLGQLNAACGV 563 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 L L + +++++++AKGP R AG E F+ + L RDPILYFIQRLRDEAHRF I Sbjct: 564 LDALGLS-QVSLMAVAKGPDRDAGRETLFLPDRPGIKLEPRDPILYFIQRLRDEAHRFVI 622 Query: 543 TTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 +HRK R K L E+ GIGP RKR LL FGT+K I R+S L + GIS + A Sbjct: 623 GSHRKLRSKDIREAGLQEVPGIGPARKRALLHHFGTIKEIERASVADLGKVPGISAESAR 682 Query: 602 KIYNHFH 608 +I++ FH Sbjct: 683 RIFDFFH 689 >gi|302391083|ref|YP_003826903.1| excinuclease ABC subunit C [Acetohalobium arabaticum DSM 5501] gi|302203160|gb|ADL11838.1| Excinuclease ABC subunit C [Acetohalobium arabaticum DSM 5501] Length = 607 Score = 557 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 208/622 (33%), Positives = 336/622 (54%), Gaps = 34/622 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 + +P+ GVY M + AG V+YVGKA +L+KR++SY + NH+ + ++ +I +I + Sbjct: 6 QLDNLPDASGVYLMKNKAGEVIYVGKAKSLRKRVRSYFQKSRNHSFKTEALVKRIADIDY 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +EVEAL+LEA MIK+ P+FNI L+DDK++PYI +T P ++K R Sbjct: 66 IITDSEVEALILEATMIKKHNPKFNIRLKDDKTYPYIKVTTNEDYPRVFKTRIVKKDGDR 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS--VFRHRTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ V+AV KT+ L+ F LR C + + R CL + I++C GPC + + Sbjct: 126 YFGPYTDVNAVHKTLKLLRDLFPLRDCKKNISCKEKKDRACLNYHIEKCLGPCVNSVDVD 185 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 +Y V E FL G NL E++ M QA ++++E A RD++ A+ + + Sbjct: 186 EYKSMVDEVCLFLKGKQQNLIEELKEEMEQAADRQEFEQAAELRDQIEAIKKVTENQKVV 245 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D + H +LAC+Q G+ G F ++ + + L+ FL+Q+Y Sbjct: 246 SSDFADQDVMATSHQDDLACVQVMAVRNGRLVGEEDFIMEGTTPEAIDETLTAFLKQYYM 305 Query: 296 D-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 + P+ ILL E E+ ++E ++ G +V + P+ G KR++I A NA + Sbjct: 306 NINYIPKEILLEIEIEDKEIMEDWLNEKRGSRVYLKTPQHGAKRQLINMAQRNAKYNLKD 365 Query: 355 KL----STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 L +K+ L P RIE +D S+I G V +VV K Sbjct: 366 YLIKSDYKSRKPLKAVKELQTYLDLEEPPVRIEGFDISNIQGTDPVASLVVFENGTAQKG 425 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YR+F + V+ DD MM+ V++RR+S+L++ + PD++++D Sbjct: 426 DYRRFKIKT--VEGPDDFGMMQEVVKRRYSRLLEED--------------IKLPDLILID 469 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQL+A VL +L ++N+ +I +AK + E F + E ++L LY + Sbjct: 470 GGKGQLNAVLEVLDELGIDNQ-PVIGLAKKEE-----EIFVEGQSEPIILPRDSEALYLL 523 Query: 531 QRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 QR+RDEAHRFA+ HRK R + +S LD+I GIG R+ LLQ FG++ + ++S E L Sbjct: 524 QRVRDEAHRFAVNYHRKLRSRRVTHSMLDDIPGIGQKRRERLLQYFGSLDKVRKASVEEL 583 Query: 590 ASIEGISKKIACKIYNHFHKNT 611 + ++GIS++IA +YN+ ++T Sbjct: 584 SEVKGISEQIATTVYNYLREHT 605 >gi|70730923|ref|YP_260664.1| excinuclease ABC subunit C [Pseudomonas fluorescens Pf-5] gi|92058694|sp|Q4KAR9|UVRC_PSEF5 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|68345222|gb|AAY92828.1| UvrABC system, C protein [Pseudomonas fluorescens Pf-5] Length = 607 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 216/609 (35%), Positives = 332/609 (54%), Gaps = 25/609 (4%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+M D R+LYVGKA NL+ R+ SY + ++++I I T+T E E Sbjct: 17 RPGVYRMFDSDARLLYVGKAKNLKNRLSSYFRKTGQAPKTAALVARIAQIETTITANETE 76 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE +IK +P +NILLRDDKS+PY+ ++D P HR + +G YFGP+ S Sbjct: 77 ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDG-DFPRFSIHRGAKKQKGKYFGPYPSA 135 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 A+ ++++ LQ+TF +R C DS +++RTRPCL +QIKRC PC G + E Y E V + Sbjct: 136 GAIRESLSLLQKTFMVRQCEDSYYKNRTRPCLQYQIKRCKAPCVGLVEPEVYAEDVRHSV 195 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246 FL G ++ L ++++ M A D+E A RD+++ L +Q+ +D + Sbjct: 196 MFLEGRSNALTDELSTAMEAAASTLDFEKAAELRDQISLLRRVQDQQSMEGGTGDVDVVA 255 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP---CPENI 303 + N AC+ G+ G+ FF + E A+++S FL Q++ P P + Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEDVAEVMSAFLGQYFVSSPERDLPSEL 315 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 +++ E+ L + + G ++ I+ +G + + + A+ NA ++ + +L+ Sbjct: 316 IVNVVHEDFPTLIAAIDELRGRELTISHRVRGTRARWQQLAVTNAEQALSARLANRQHVA 375 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 + + L P+R+E YD SH G + V VV G G +K+ YR++N+ V Sbjct: 376 ARFEALAEVLNLDEPPQRLECYDISHSSGEATVASCVVFGPEGPLKSDYRRYNIEG--VT 433 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD A M L RRFS+L E L PD++++DGGKGQLS A+ VL Sbjct: 434 AGDDYAAMHQALTRRFSKLKDGEGKL--------------PDILLVDGGKGQLSMARDVL 479 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542 +L V + I ++ +AKG R AG E ++ L P L+ IQ++RDEAHRFAI Sbjct: 480 NELAVPDLI-LLGVAKGATRKAGFETLYLNDAAHEFTLKGDSPALHLIQQIRDEAHRFAI 538 Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR K S L+ + G+GP R+R LL+ FG ++ +SR+S + +A GISKK+A Sbjct: 539 TGHRARRGKTRRTSTLEGVAGVGPKRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAE 598 Query: 602 KIYNHFHKN 610 IY + H Sbjct: 599 LIYANLHSE 607 >gi|319404068|emb|CBI77656.1| excinuclease ABC subunit C [Bartonella rochalimae ATCC BAA-1498] Length = 634 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 307/611 (50%), Positives = 420/611 (68%), Gaps = 5/611 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +P PGVY+ML+ G +LY+GKA NL+KR+ Y + H RIT MI + N++ F VT Sbjct: 23 KNLPHKPGVYRMLNENGDILYIGKARNLKKRVSHYTREHGHNDRITRMIRETNHMEFVVT 82 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+LLRDDK+ PYI+ITD H+ PALYKH + T + YFG Sbjct: 83 HTETEALLLEANLIKRLQPRFNVLLRDDKTLPYIIITDDHRAPALYKHHGARTRKAHYFG 142 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS +AV +TIN LQR F LR+C DSV + TRPCLL+QIKRCS PCT EISS Y++ Sbjct: 143 PFASSEAVTQTINVLQRAFLLRTCTDSVLENCTRPCLLYQIKRCSAPCTHEISSSDYLQL 202 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V +AK FLSG + ++K + + M++A D+E AI +RDRL+ALSHIQ+H Sbjct: 203 VKKAKAFLSGKSQSVKNDMVQAMHKAAENLDFERAITYRDRLSALSHIQSHQSINPQTVK 262 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F++ + + CIQ FF GQN G ++F K D ++++IL+ FL QFY +KP P Sbjct: 263 EADVFAIAQQEGMTCIQVFFFRMGQNWGNRSYFPKADPSFSSSEILASFLIQFYDNKPIP 322 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + ILLS +E LL + + +K+ +++PKQGE++ ++ A NA+ + +KLS Sbjct: 323 KLILLSNTIDEEILLTEALSLKANHKISLSLPKQGERKALVNHAYTNAYEALQRKLSETS 382 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 +H+ L + K F L H P+RIE+YDNSH+MG +AVG M+VV + GFVKNQYRKFN+ Sbjct: 383 AHKKFLCNIVKTFQLSHTPRRIEVYDNSHLMGTNAVGVMIVVDQTGFVKNQYRKFNICST 442 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPK-KQEYSFPSWPDVVILDGGKGQLSAA 479 D+K +D MM+ V+ERRF +L+K N + E S+P WPD++++DGG+ Q++ Sbjct: 443 DIKPGNDLGMMKEVIERRFLRLLKTYGLPNKNKNIGYEDSYPLWPDLILIDGGQEQINIT 502 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 VL +L +++ IT+I IAKGP R AG+E+FF+K + L DPILYF+QRLRDEAHR Sbjct: 503 NTVLSELGLDDFITVIGIAKGPDRKAGLERFFMKGKQPFTLPPHDPILYFLQRLRDEAHR 562 Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAI TH+ +RKK +PLDEI IGP RKR LL FG+ K +SR+S E L + GISK+ Sbjct: 563 FAIGTHKAKRKKETFKNPLDEIENIGPTRKRALLNYFGSSKAVSRASIEDLTKVTGISKE 622 Query: 599 IACKIYNHFHK 609 IA KI+N+F+K Sbjct: 623 IAYKIHNYFNK 633 >gi|119385043|ref|YP_916099.1| excinuclease ABC subunit C [Paracoccus denitrificans PD1222] gi|119374810|gb|ABL70403.1| Excinuclease ABC subunit C [Paracoccus denitrificans PD1222] Length = 623 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 270/611 (44%), Positives = 377/611 (61%), Gaps = 14/611 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+MLD G VLYVGKA NL+ R+ +Y + H+ RI MI + ++ F Sbjct: 22 LKTLDGSPGVYRMLDQQGAVLYVGKARNLRARVSNYARGSGHSARIARMIRETCSMMFLT 81 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N+IK+LKPR+N+LLRDDKSFP IL+ H + KHR + +G Y+ Sbjct: 82 TRTETEALLLEQNLIKQLKPRYNVLLRDDKSFPNILVAKSHPFAQIKKHRGAKAEKGDYY 141 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPFAS AV +T+N LQR F LRSC D+ F RTRPCLL+QIKRCS PC G I E+Y Sbjct: 142 GPFASAGAVNRTLNQLQRVFLLRSCTDATFSSRTRPCLLYQIKRCSAPCVGRIGLEEYNA 201 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240 V +A+ FL G + ++ ++AR M +A +YE A RDR+ AL+ +Q+ Sbjct: 202 LVADAELFLQGKSTAIQAQLAREMAEAAEAMEYERAAALRDRIKALTAVQSVQAINPRGV 261 Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 D +L+ AC+Q F Q+ G F+ + + + +++ FL QFY K Sbjct: 262 PEADVIALHMEGGQACVQVFFIRGNQSWGNRDFYPRLNGVESADEVMQAFLAQFYDGKVP 321 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P ILLS E+ L+ + ++ G KV + VP++GEK +++E AL NA S +++S Sbjct: 322 PRLILLSHGIEDPDLMTEALSEKAGRKVTLGVPRRGEKAELVENALRNARESLARRMSES 381 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + Q +L+ + LP +P+RIE+YDNSHI G +AVG MVV G G++K+QYRKFN+ Sbjct: 382 AAQQRLLEGLAEALDLPAVPQRIEVYDNSHIQGTNAVGGMVVAGPEGWIKSQYRKFNIKG 441 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 ++ DD MM+ VL RRFS+L+K + + WPD++++DGG GQ+SA Sbjct: 442 TEITPGDDFGMMKEVLTRRFSRLLKEDPDRQTDA---------WPDLLLIDGGAGQVSAV 492 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 ++ ++ VE+ I +I +AKG R G E+F L M DP+LYFIQRLRDEAHR Sbjct: 493 HEIMAEMGVED-IPMIGVAKGEDRDHGKEEFHRHGQRPFALRMNDPVLYFIQRLRDEAHR 551 Query: 540 FAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 +AI THR +R KA +PLDEI GIG RKR LL FG+ K +SR+ L ++EGIS+ Sbjct: 552 WAIGTHRAKRAKAVMANPLDEIAGIGAARKRALLAHFGSAKAVSRAGLADLVAVEGISEA 611 Query: 599 IACKIYNHFHK 609 +A KI +HFHK Sbjct: 612 MAQKIVDHFHK 622 >gi|119505767|ref|ZP_01627835.1| excinuclease ABC subunit C [marine gamma proteobacterium HTCC2080] gi|119458401|gb|EAW39508.1| excinuclease ABC subunit C [marine gamma proteobacterium HTCC2080] Length = 608 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 224/612 (36%), Positives = 328/612 (53%), Gaps = 23/612 (3%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVYQM G +LYVGKA NL+ R+ SY ++ T + ++++I +I+ TV Sbjct: 10 LKSLTTRPGVYQMYGKEGDLLYVGKAKNLKNRVTSYFRASGLTAKTMALVNRIQDIQVTV 69 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TEV+ALLLE N+IK +P +NI L+DDKS+PYI ++ + P L HR +G YF Sbjct: 70 TSTEVDALLLEHNLIKEHRPPYNISLKDDKSYPYIYLSSHDRWPRLALHRGPKRRKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ S AV T++ LQ+ +R C DS FR+R+RPCL +QI RCSGPC G +S E Y E Sbjct: 130 GPYPSAGAVRSTLHLLQKVLKVRQCQDSYFRNRSRPCLQYQIGRCSGPCVGLVSDENYAE 189 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--N 240 V + + FL G + L ++A M A +E A RD+L L +Q+ Sbjct: 190 QVEKTELFLKGKSQELMGRLADEMESAATDLRFEEAAERRDQLMQLQKVQSVQGIEGVRG 249 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--DKP 298 +D ++ AC+Q F + G+ T++ T + +L F+ FY + Sbjct: 250 NLDVLAVAVAGGSACVQVLFIREARVLGSRTYYPPTRLDEDVNAVLEAFMPLFYLSGKQV 309 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P I++++ E L + + KV+I + + + +E A A + T LS Sbjct: 310 IPHEIIVTDLPEGAESLAEALSIRAERKVEIRSKVREARARWLEMAQQTADTNLTAHLSG 369 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + + L+ ++ L P R+E +D SH G + V VV +G K YRKFN+ Sbjct: 370 KQTMAGRLESLRRELDLDTPPSRMECFDISHSSGEATVASCVVFDNSGPRKADYRKFNVE 429 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 ++ DD A M+ LERR+ +L E S PDV+ +DGGKGQ+S Sbjct: 430 G--IQPGDDYAAMQQALERRYKRLAAGE--------------GSLPDVLFIDGGKGQVSQ 473 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEA 537 A VL +EN + ++ +AKG R AG E + G+ VL +P L+ IQ++RDEA Sbjct: 474 AMSVLGNYGIEN-VRVLGVAKGTTRKAGFETLVDGETGKESVLRGDNPALHLIQQIRDEA 532 Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR RR KA S L+ I G+G R+R LL+ FG+ +S + E L IEGIS Sbjct: 533 HRFAITGHRARRAKARKTSTLEGIPGVGAKRRRELLRHFGSASGVSGARVEELVKIEGIS 592 Query: 597 KKIACKIYNHFH 608 +A IY+H H Sbjct: 593 SSLAQTIYDHLH 604 >gi|310815055|ref|YP_003963019.1| excinuclease ABC, C subunit [Ketogulonicigenium vulgare Y25] gi|308753790|gb|ADO41719.1| excinuclease ABC, C subunit [Ketogulonicigenium vulgare Y25] Length = 618 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 266/610 (43%), Positives = 371/610 (60%), Gaps = 14/610 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 +++ PGVY+MLD RVLYVGKA NL+ R+ +Y H+ RI MI + + F Sbjct: 16 LKRLDGSPGVYRMLDGESRVLYVGKAKNLRARVSNYAREGGHSVRIDRMIRETRAMMFLT 75 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TEVEALLLE N+IK+LKP +N+LLRDDKSFP I I+ H P + KHR + + YF Sbjct: 76 TKTEVEALLLEQNLIKQLKPHYNVLLRDDKSFPNIRISRDHAFPQIAKHRGARNEKADYF 135 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPFAS AV +T+N LQ+ F LR C DS F +R+RPCLL QIKRCS PC G+IS+ Y Sbjct: 136 GPFASAGAVNRTLNQLQKAFQLRVCEDSSFNNRSRPCLLHQIKRCSAPCVGKISAADYAA 195 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240 V EAK FL G + ++E++ M A+ ++E A RDR+ AL+ +Q Sbjct: 196 EVAEAKLFLQGRSAAIQERLGAEMAAASEAMEFERAAALRDRIRALTAVQTSQGINPRTV 255 Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 D +L+ AC+Q F QN G F+ K + E+ +++ F+ QFY ++ Sbjct: 256 PEADVIALHMEHGQACVQVFFIRANQNWGNHDFYPKLNEETDAGEVMQAFVGQFYANRDP 315 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 +LLS+ ++ L+ + ++ G K++I VP++GE+ +++E AL NA S +++S Sbjct: 316 ARVVLLSQGLDDPDLMAQALSEKAGRKIEIAVPQRGERAELVEGALRNARESLGRRMSET 375 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + + +L + F L P+RIE+YDNSHI G A+G MVV G GF KNQYRKFN+ Sbjct: 376 ATQRRLLDGLAEAFDLDGPPRRIELYDNSHIQGAHAIGAMVVAGPEGFEKNQYRKFNIKD 435 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD AMMR VL RRF +L++ + + WPD++ +DGG GQ+SA Sbjct: 436 PNTTPGDDFAMMREVLTRRFQRLLRED---------PDRQTAEWPDLLFIDGGAGQVSAV 486 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 GVL +L VE+ + +I IAKG R G E+F+ + L DP+LYFIQR+RDE HR Sbjct: 487 HGVLVELGVED-VAMIGIAKGEDRDLGKEEFYRHGRPVMALRHNDPVLYFIQRMRDEVHR 545 Query: 540 FAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAI THR +R KA + LDE+ G+GP RKR LLQ FG+ K +S + E L ++ GIS Sbjct: 546 FAIGTHRAKRSKAFTTNALDELPGVGPARKRALLQHFGSAKDVSNAHLEDLKAVPGISDA 605 Query: 599 IACKIYNHFH 608 +A KIYN+FH Sbjct: 606 MAEKIYNYFH 615 >gi|325277353|ref|ZP_08142978.1| excinuclease ABC subunit C [Pseudomonas sp. TJI-51] gi|324097543|gb|EGB95764.1| excinuclease ABC subunit C [Pseudomonas sp. TJI-51] Length = 607 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 210/609 (34%), Positives = 335/609 (55%), Gaps = 25/609 (4%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+M D+ R+LYVGKA NL+KR+ SY + ++++I + T+T E E Sbjct: 17 RPGVYRMFDVDARLLYVGKAKNLKKRLASYFRKTGLAPKTAALVARIAQVETTITANETE 76 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE N+IK +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S Sbjct: 77 ALLLEQNLIKEWRPPYNILLRDDKSYPYVFLSDGE-FPRLGIHRGAKKAKGRYFGPYPSA 135 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 A+ ++++ LQ+ F +R C DS + +RTRPCL +QIKRC GPCT +S+++Y E V + Sbjct: 136 GAIRESLSLLQKAFSVRQCEDSYYANRTRPCLQYQIKRCKGPCTDLVSAQEYAEDVRHSV 195 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246 FL G + L ++ M +A + D+E A RD+++ L +Q+ +D + Sbjct: 196 MFLEGRSQQLGNELNAEMEKAAMALDFEKAAELRDQISLLRRVQDQQYIEGGTGDVDVIA 255 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK---PCPENI 303 + N AC+ G+ G+ FF + E A++++ FL Q+Y P + Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEDLAEVMAAFLSQYYLGNAERELPGEL 315 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 +++ E+ + + + G ++ I+ +G + + + A+ NA ++ +L+ Sbjct: 316 IVNVVHEDFAAITEALHTLRGRELTISHRVRGTRARWQQLAVTNAEQALNARLANRQHMA 375 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 + + L +P+R+E YD SH G + V VV G G +K+ YR+FN+ + Sbjct: 376 ARFEALAEVLGLDEVPQRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--IT 433 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD A M L RR+ ++ E L PDV+++DGGKGQL+ A+ V+ Sbjct: 434 AGDDYAAMHQALTRRYGRIKDGEGKL--------------PDVLLVDGGKGQLNMARDVM 479 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542 ++L +T++ +AKG R AG E ++ L L+ IQ++RDEAHRFAI Sbjct: 480 QELGFS-ELTLLGVAKGVTRKAGFETLYLNDVHHEFTLKGDSAALHLIQQIRDEAHRFAI 538 Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR KA S L+++ G+GP R+R LL+ FG ++ ++R+S + +A GISKK+A Sbjct: 539 TGHRARRGKARRVSSLEDVAGVGPKRRRDLLKHFGGLQELNRASIDEIAKAPGISKKLAE 598 Query: 602 KIYNHFHKN 610 IY H Sbjct: 599 SIYASLHSE 607 >gi|26990793|ref|NP_746218.1| excinuclease ABC subunit C [Pseudomonas putida KT2440] gi|32130289|sp|Q88FJ7|UVRC_PSEPK RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|24985797|gb|AAN69682.1|AE016604_4 excinuclease ABC, C subunit [Pseudomonas putida KT2440] Length = 607 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 212/609 (34%), Positives = 335/609 (55%), Gaps = 25/609 (4%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+M D R+LYVGKA NL+KR+ SY + ++++I + T+T E E Sbjct: 17 RPGVYRMFDGEARLLYVGKAKNLKKRLASYFRKTGLAPKTAALVARIAQVETTITANETE 76 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE N+IK +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S Sbjct: 77 ALLLEQNLIKEWRPPYNILLRDDKSYPYVFLSDGE-FPRLGIHRGAKKAKGRYFGPYPSA 135 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 A+ ++++ LQ+ F +R C DS + +RTRPCL +QIKRC GPCT +++E+Y E V + Sbjct: 136 GAIRESLSLLQKAFSVRQCEDSYYANRTRPCLQYQIKRCKGPCTDLVTAEEYAEDVRHSV 195 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246 FL G + L ++ M +A + D+E A RD++A L +Q+ +D + Sbjct: 196 MFLEGRSQQLGNELNAEMEKAAMALDFEKAAELRDQIALLRRVQDQQYIEGGSGDVDVIA 255 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK---PCPENI 303 + N AC+ G+ G+ FF + E A++++ FL Q+Y P + Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVAEVMAAFLSQYYLGNAERELPGEL 315 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 +++ E+ + + + G ++ I+ +G + + + A+ NA ++ +L+ Sbjct: 316 IVNVVHEDFNAITEALHTLRGRELTISHRVRGTRARWQQLAVTNAEQALNARLANRQHMA 375 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 + + L +P+R+E YD SH G + V VV G G +K+ YR+FN+ V Sbjct: 376 ARFEALAEVLGLDEVPQRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIED--VT 433 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD A M L RR+ ++ E L PDV+++DGGKGQL+ A+ V+ Sbjct: 434 AGDDYAAMHQALTRRYGRIKDGEGKL--------------PDVLLVDGGKGQLNMARDVM 479 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542 ++L + +T++ +AKG R AG E ++ L L+ IQ++RDEAHRFAI Sbjct: 480 QELGFTD-LTLLGVAKGVTRKAGFETLYLNDVHHEFTLKGDSSALHLIQQIRDEAHRFAI 538 Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR KA S L+++ G+GP R+R LL+ FG ++ ++R+S + +A GISKK+A Sbjct: 539 TGHRARRGKARRVSSLEDVAGVGPKRRRDLLKHFGGLQELNRASIDEIAKAPGISKKLAE 598 Query: 602 KIYNHFHKN 610 IY H Sbjct: 599 SIYASLHSE 607 >gi|296116317|ref|ZP_06834933.1| excinuclease ABC subunit C [Gluconacetobacter hansenii ATCC 23769] gi|295977136|gb|EFG83898.1| excinuclease ABC subunit C [Gluconacetobacter hansenii ATCC 23769] Length = 641 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 266/614 (43%), Positives = 356/614 (57%), Gaps = 15/614 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + + MP PGVY+ML G VLYVGKA L+KR+ SY + R+ M+S+ + Sbjct: 34 ALQTMPLSPGVYRMLGRKGEVLYVGKALALKKRVTSYTQVHRLPERLRRMVSETAYMEIV 93 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T TE EALLLEAN IKR++PR+NILLRDDKS+P+I++TD+H+ P + KHR SY Sbjct: 94 TTHTEAEALLLEANYIKRMQPRYNILLRDDKSYPWIILTDRHEFPQIAKHRGKPVKGASY 153 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GPFAS +V +T+N LQ+ F LRSC DSV + RTRPCLL QI RCS PC IS E Y Sbjct: 154 WGPFASAWSVNQTLNLLQKAFLLRSCTDSVLQSRTRPCLLHQIHRCSAPCVDLISQEDYG 213 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---- 237 V +A+ FLSG N + E++ R M +A +E A RDR+ LS +Q Sbjct: 214 ALVQQARDFLSGKNPRMHEELVRQMEEAAGALQFERAAAIRDRIRGLSAMQQDASVINPT 273 Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 + D +++ +CI+ F G+N G FF + A +L+ FL QFY DK Sbjct: 274 TMSDADIVAIWQIAGQSCIEVFFIRGGRNNGNRAFFPSHARDEGAADVLAAFLAQFYDDK 333 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P P IL++ + LL + + G +V+I P++GEKR ++E A +NA + +KL+ Sbjct: 334 PPPGQILVNHAISDNELLGRALELRRGKRVEIIHPQRGEKRAVLEHAELNAREALERKLA 393 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 +L+ F L + P RIE YDNSHIMG A G MVV G GF K YRKF + Sbjct: 394 ESAGQARLLRGVADLFGLANPPGRIETYDNSHIMGSHAYGVMVVAGPEGFEKRAYRKFAI 453 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 DD MMR VLERRFS+ +++ E WPD++++DGG GQ S Sbjct: 454 KGPVTPG-DDFGMMREVLERRFSRALRDREEGIRPD--------DWPDILLIDGGAGQYS 504 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A + VL +L V + +T++ IAKG R AG E F L RDP+LY++QRLRDEA Sbjct: 505 AVRAVLDELGVTD-VTLVGIAKGIDRDAGREWFHTATRPPFQLPPRDPVLYYLQRLRDEA 563 Query: 538 HRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAITTHR R K S LD+I G+GP RKR LL FG+ + + ++ L S GIS Sbjct: 564 HRFAITTHRAGRSKTLVKSELDDIPGVGPARKRALLNRFGSARGVRQAGLGELESAPGIS 623 Query: 597 KKIACKIYNHFHKN 610 + A IY FH + Sbjct: 624 RDTARTIYGFFHPD 637 >gi|312960119|ref|ZP_07774631.1| UvrABC system protein C [Pseudomonas fluorescens WH6] gi|311285613|gb|EFQ64182.1| UvrABC system protein C [Pseudomonas fluorescens WH6] Length = 607 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 217/609 (35%), Positives = 336/609 (55%), Gaps = 25/609 (4%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+M D R+LYVGKA NL+ R+ SY + + ++++I + T+T E E Sbjct: 17 RPGVYRMFDSEARLLYVGKAKNLKNRLASYFRKSGLAPKTAALVARIAQVETTITANETE 76 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE +IK +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S Sbjct: 77 ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDG-DFPRLSIHRGAKKAKGKYFGPYPSA 135 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 A+ ++++ LQ+TFF+R C DS +++RTRPCL +QIKRC PC G + S +Y E V + Sbjct: 136 GAIRESLSLLQKTFFVRQCEDSFYKNRTRPCLQYQIKRCKAPCVGLVDSAEYAEDVRHSV 195 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246 FL G ++ L ++++ M QA D+E A RD+++ L +Q+ +D + Sbjct: 196 MFLEGRSNALTDELSSAMEQAAGTLDFERAAELRDQISLLRRVQDQQSMEGGTGDVDVIA 255 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP---CPENI 303 + N AC+ G+ G+ FF +T + A++++ FL Q+Y P P + Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQTGIDEDVAEVMAAFLGQYYVSSPERDLPSEL 315 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 +++ E+ L + + ++ I+ +G + + + A+ NA ++ + +L+ Sbjct: 316 IVNVVHEDFPTLIEAIHELRDRELDISHRVRGTRARWQQLAVTNAEQALSARLANRQHVA 375 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 + L P+R+E YD SH G + V VV G G +K+ YR++N+ V Sbjct: 376 ARFDALAEVLKLDEPPQRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRYNIEG--VT 433 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD A M L RRFS+L E L PD++++DGGKGQLS A+ VL Sbjct: 434 AGDDYAAMHQALTRRFSKLKDGEGKL--------------PDILLVDGGKGQLSMARDVL 479 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542 +L V + I ++ +AKG R AG E ++ L P L+ IQ++RDEAHRFAI Sbjct: 480 NELAVPDLI-LLGVAKGATRKAGFETLYLNDAAHEFTLKGDSPALHLIQQIRDEAHRFAI 538 Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR K S L+ + G+GP R+R LL+ FG ++ +SR+S + +A GISKK+A Sbjct: 539 TGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAE 598 Query: 602 KIYNHFHKN 610 IY + H Sbjct: 599 LIYANLHSE 607 >gi|229589686|ref|YP_002871805.1| excinuclease ABC subunit C [Pseudomonas fluorescens SBW25] gi|259710344|sp|C3K7T2|UVRC_PSEFS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|229361552|emb|CAY48428.1| excinuclease uvrABC system protein C [Pseudomonas fluorescens SBW25] Length = 607 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 217/609 (35%), Positives = 335/609 (55%), Gaps = 25/609 (4%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+M D R+LYVGKA NL+ R+ SY + + ++++I + T+T E E Sbjct: 17 RPGVYRMFDSEARLLYVGKAKNLKNRLASYFRKSGLAPKTAALVARIAQVETTITANETE 76 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE +IK +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S Sbjct: 77 ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDG-NFPRLSIHRGAKKQKGKYFGPYPSA 135 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 A+ ++++ LQ+TFF+R C DS +++RTRPCL +QIKRC PC G + +Y E V + Sbjct: 136 GAIRESLSLLQKTFFVRQCEDSFYKNRTRPCLQYQIKRCKAPCVGLVDPAEYAEDVRHSV 195 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246 FL G ++ L ++++ M QA D+E A RD+++ L +Q+ +D + Sbjct: 196 MFLEGRSNALTDELSGAMEQAASTLDFERAAELRDQISLLRRVQDQQSMEGGTGDVDVIA 255 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP---CPENI 303 + N AC+ G+ G+ FF +T + A++++ FL Q+Y P P + Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQTGIDEEVAEVMAAFLGQYYVSSPERDLPSEL 315 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 +++ E+ L + + G ++ I+ +G + + + A+ NA ++ +L+ Sbjct: 316 IVNVVHEDFPTLIEAIHELRGRELDISHRVRGTRARWQQLAVTNAEQALGARLANRQHVA 375 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 + L P+R+E YD SH G + V VV G G +K+ YR++N+ V Sbjct: 376 ARFDALAEVLNLDEPPQRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRYNIEG--VT 433 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD A M L RRFS+L E L PD++++DGGKGQLS A+ VL Sbjct: 434 AGDDYAAMHQALTRRFSKLKDGEGKL--------------PDILLVDGGKGQLSMARDVL 479 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAI 542 +L V + I ++ +AKG R AG E ++ L P L+ IQ++RDEAHRFAI Sbjct: 480 NELAVPDLI-LLGVAKGATRKAGFETLYLNDSAHEFTLKGDSPALHLIQQIRDEAHRFAI 538 Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR K S L+ + G+GP R+R LL+ FG ++ +SR+S + +A GISKK+A Sbjct: 539 TGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAE 598 Query: 602 KIYNHFHKN 610 IY + H Sbjct: 599 LIYANLHSE 607 >gi|148547004|ref|YP_001267106.1| excinuclease ABC subunit C [Pseudomonas putida F1] gi|189038076|sp|A5W1B2|UVRC_PSEP1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|148511062|gb|ABQ77922.1| Excinuclease ABC subunit C [Pseudomonas putida F1] Length = 607 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 212/609 (34%), Positives = 334/609 (54%), Gaps = 25/609 (4%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+M D R+LYVGKA NL+KR+ SY + ++++I + T+T E E Sbjct: 17 RPGVYRMFDGEARLLYVGKAKNLKKRLASYFRKAGLAPKTAALVARIAQVETTITANETE 76 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE N+IK +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S Sbjct: 77 ALLLEQNLIKEWRPPYNILLRDDKSYPYVFLSDGE-FPRLGIHRGAKKAKGRYFGPYPSA 135 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 A+ ++++ LQ+ F +R C DS + +RTRPCL +QIKRC GPCT +++E+Y E V + Sbjct: 136 GAIRESLSLLQKAFSVRQCEDSYYANRTRPCLQYQIKRCKGPCTDLVTAEEYAEDVRHSV 195 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246 FL G + L ++ M +A + D+E A RD++A L +Q+ +D + Sbjct: 196 MFLEGRSQQLGNELNAEMEKAAMALDFEKAAELRDQIALLRRVQDQQYIEGGSGDVDVIA 255 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK---PCPENI 303 + N AC+ G+ G+ FF + E A++++ FL Q+Y P + Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVAEVMAAFLSQYYLGNAERELPGEL 315 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 +++ E+ + + + G ++ I+ +G + + + A+ NA ++ +L+ Sbjct: 316 IVNVVHEDFNAITEALHTLRGRELTISHRVRGTRARWQQLAVTNAEQALNARLANRQHMA 375 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 + + L +P+R+E YD SH G + V VV G G +K+ YR+FN+ V Sbjct: 376 ARFEALAEVLGLDEVPQRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VT 433 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD A M L RR+ ++ E L PDV+++DGGKGQL+ A+ V+ Sbjct: 434 AGDDYAAMHQALTRRYGRIKDGEGKL--------------PDVLLVDGGKGQLNMARDVM 479 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542 + L + +T++ +AKG R AG E ++ L L+ IQ++RDEAHRFAI Sbjct: 480 QALGFTD-LTLLGVAKGVTRKAGFETLYLNDVHHEFTLKGDSSALHLIQQIRDEAHRFAI 538 Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR KA S L+++ G+GP R+R LL+ FG ++ ++R+S + +A GISKK+A Sbjct: 539 TGHRARRGKARRVSSLEDVAGVGPKRRRDLLKHFGGLQELNRASIDEIAKAPGISKKLAE 598 Query: 602 KIYNHFHKN 610 IY H Sbjct: 599 SIYASLHSE 607 >gi|260576439|ref|ZP_05844429.1| excinuclease ABC, C subunit [Rhodobacter sp. SW2] gi|259021322|gb|EEW24628.1| excinuclease ABC, C subunit [Rhodobacter sp. SW2] Length = 632 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 262/610 (42%), Positives = 369/610 (60%), Gaps = 14/610 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+ML+ A VLYVGKA NL+ R+ +Y ++ H+ RI MIS+ ++ F Sbjct: 30 LKGLDGSPGVYRMLNSASEVLYVGKARNLRARVSNYARASGHSGRIARMISETASMMFLT 89 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N+IK+LKPR+N+LLRDDKSFP I+I H P + KHR + GSYF Sbjct: 90 TRTETEALLLEQNLIKQLKPRYNVLLRDDKSFPDIVIPSGHPFPMIRKHRGKRSEPGSYF 149 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPFAS AV +T+N LQR F LR+C D+VF RTRPCLL+QIKRC+ PC G+++ E Y Sbjct: 150 GPFASAGAVNRTLNQLQRVFLLRTCTDAVFDGRTRPCLLYQIKRCAAPCVGKVTPEDYAT 209 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240 + +A KFL G + ++ +AR M +A+ ++E A RDR+ AL+ +Q+ Sbjct: 210 LLADATKFLQGRSTTVQANLARAMAEASEAMEFERAAALRDRIKALTQVQSAQGINPRGV 269 Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 D +L+ AC+Q F Q+ G F+ +T + + +I+ FL QFY DK Sbjct: 270 AEADVIALHLEGGQACVQVFFIRANQSWGNRDFYPRTGAGAEAPEIMEAFLAQFYDDKEP 329 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P ILLS + L+ + G KV + VP++GEK +++E A NA S +K++ Sbjct: 330 PRLILLSHPVDNPDLVTQLLSDRAGRKVTLGVPQRGEKAELVENAARNARESLARKVAEG 389 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 S +L + F L PKRIE+YDNSHI G +AVG M+V G GF+K+QYRKFN+ Sbjct: 390 ASQNRLLAGLAEAFDLDAPPKRIEVYDNSHIQGSNAVGGMIVAGAEGFLKSQYRKFNIKS 449 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD MM+ VL RRF +L+K + + WPD++++DGG GQ+S Sbjct: 450 DAGANSDDFGMMKEVLTRRFERLLKEDPDRKSDA---------WPDLLLIDGGAGQVSVV 500 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 ++ L V++ I ++ +AKG R AG E+F L M DP+LYF+QRLRDEAHR Sbjct: 501 AEIMAGLGVDD-IAMVGVAKGVDRDAGKEEFHRPGQRPFALRMNDPVLYFVQRLRDEAHR 559 Query: 540 FAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 +AI HR +R KA +PLDEI G+G RK+ LL FG+ K +SR+ L ++ GIS Sbjct: 560 WAIGAHRAKRAKAVSATPLDEIPGVGAARKKALLAHFGSAKAVSRAGISDLMAVTGISAA 619 Query: 599 IACKIYNHFH 608 +A I +HF+ Sbjct: 620 MAQTISDHFN 629 >gi|149203063|ref|ZP_01880034.1| excinuclease ABC subunit C [Roseovarius sp. TM1035] gi|149143609|gb|EDM31645.1| excinuclease ABC subunit C [Roseovarius sp. TM1035] Length = 622 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 264/609 (43%), Positives = 379/609 (62%), Gaps = 15/609 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY+MLD RVLYVGKA NL+ R+ +Y HT RI MIS+ ++ F T Sbjct: 23 TLDASPGVYRMLDAQARVLYVGKARNLRARVANYARPTGHTGRIARMISETASMMFLTTA 82 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLE N+IK+LKPR+N+LLRDDKSFP IL+T H+ P + KHR + +G+Y+GP Sbjct: 83 TETEALLLEQNLIKQLKPRYNVLLRDDKSFPNILVT-GHEFPMIKKHRGAKREKGAYYGP 141 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 FAS AV +T+ LQR F LR+C D++F RTRPCL +QIKRC+ PC G+I +Y V Sbjct: 142 FASAGAVNRTLAQLQRVFQLRNCTDAMFESRTRPCLQYQIKRCTAPCVGKIDRAEYATQV 201 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241 +A+++LSG + ++EK+A M +A +YE A RDR+ A++ +Q + Sbjct: 202 SDAERYLSGRSTEIQEKLAVQMAEAAEAMEYERAAALRDRIKAMTQVQTAQGINPRTVDE 261 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D +L+ + AC+Q F GQN G F+ + + A+ L F+ QFY K P Sbjct: 262 ADVIALHLEQGQACVQVFFIRGGQNWGNQDFYPRVGVDVEEAEALEAFIGQFYDSKEPPR 321 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 +LLS E L++ + + G KV + VP +GEK ++++ A+ NA S +K++ + Sbjct: 322 ALLLSHPIENADLMQQALSDKLGRKVTLNVPLRGEKAELVDAAMRNARESLARKMAETAT 381 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 +L+ + F LP P+RIE+YDNSHI G AVG M+V G G +KN YRKFN+ +D Sbjct: 382 TGKLLRGLAEAFDLPGPPQRIEVYDNSHIQGTDAVGAMIVAGPEGMMKNHYRKFNIRGDD 441 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 + DD MM+ VL RRF +L+K + + S WPD++++DGG GQ+SA Sbjct: 442 ITPGDDFGMMKEVLTRRFKRLLKED---------PDRSQGHWPDLLLIDGGAGQVSAVAS 492 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 +++++ VE+ I ++ +AKG R AG E+F + L DP+LYF+QRLRDEAHRFA Sbjct: 493 IMREMGVED-IPMVGVAKGVDRDAGKEEFHRVGKHPMALRHNDPVLYFVQRLRDEAHRFA 551 Query: 542 ITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 I THR +R KA +PLDE+ GIG RKR LL FG+ K +SR++ L ++EG+S +A Sbjct: 552 IGTHRAKRAKAVGATPLDEVPGIGAARKRALLAHFGSAKAVSRANLADLRAVEGVSDAMA 611 Query: 601 CKIYNHFHK 609 K+Y+ FH+ Sbjct: 612 QKLYDFFHE 620 >gi|313498052|gb|ADR59418.1| UvrC [Pseudomonas putida BIRD-1] Length = 607 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 211/609 (34%), Positives = 334/609 (54%), Gaps = 25/609 (4%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+M D R+LYVGKA NL+KR+ SY + ++++I + T+T E E Sbjct: 17 RPGVYRMFDGEARLLYVGKAKNLKKRLASYFRKAGLAPKTAALVARIAQVETTITANETE 76 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE N+IK +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S Sbjct: 77 ALLLEQNLIKEWRPPYNILLRDDKSYPYVFLSDGE-FPRLGIHRGAKKAKGRYFGPYPSA 135 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 A+ ++++ LQ+ F +R C DS + +RTRPCL +QIKRC PCT +++E+Y E V + Sbjct: 136 GAIRESLSLLQKAFSVRQCEDSYYANRTRPCLQYQIKRCKAPCTDLVTAEEYAEDVRHSV 195 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246 FL G + L ++ M +A + D+E A RD++A L +Q+ +D + Sbjct: 196 MFLEGRSQQLGNELNAEMEKAAMALDFEKAAELRDQIALLRRVQDQQYIEGGSGDVDVIA 255 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK---PCPENI 303 + N AC+ G+ G+ FF + E A++++ FL Q+Y P + Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVAEVMAAFLSQYYLGNAERELPGEL 315 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 +++ E+ + + + G ++ I+ +G + + + A+ NA ++ +L+ Sbjct: 316 IVNVVHEDFNAITEALHTLRGRELTISHRVRGTRARWQQLAVTNAEQALNARLANRQHMA 375 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 + + L +P+R+E YD SH G + V VV G G +K+ YR+FN+ V Sbjct: 376 ARFEALAEVLGLDEVPQRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VT 433 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD A M L RR+ ++ E L PDV+++DGGKGQL+ A+ V+ Sbjct: 434 AGDDYAAMHQALTRRYGRIKDGEGKL--------------PDVLLVDGGKGQLNMARDVM 479 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542 ++L + +T++ +AKG R AG E ++ L L+ IQ++RDEAHRFAI Sbjct: 480 QELGFTD-LTLLGVAKGVTRKAGFETLYLNDVHHEFTLKGDSSALHLIQQIRDEAHRFAI 538 Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR KA S L+++ G+GP R+R LL+ FG ++ ++R+S + +A GISKK+A Sbjct: 539 TGHRARRGKARRVSSLEDVAGVGPKRRRDLLKHFGGLQELNRASIDEIAKAPGISKKLAE 598 Query: 602 KIYNHFHKN 610 IY H Sbjct: 599 SIYASLHSE 607 >gi|27262180|gb|AAN87371.1| exconuclease ABC subunit C [Heliobacillus mobilis] Length = 630 Score = 555 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 220/627 (35%), Positives = 338/627 (53%), Gaps = 22/627 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +P+ PGVY M D GRV+YVGKA NL+ R++SY S N T + ++++I ++ Sbjct: 8 KLKNLPDRPGVYLMKDETGRVIYVGKAINLKNRVRSYFQSAKNLTAKTQALVARIQDLET 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK KPR+NI+LRDDK++PY+ +T + P L R G Sbjct: 68 IVTDSELEALILECNLIKEHKPRYNIMLRDDKTYPYLKVTLQETYPRLLMTRRLEKDGGK 127 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGP+ S AV +T+N L+ F LR+C+ F R RPCL + I RC PC G++S ++Y Sbjct: 128 YFGPYTSAGAVRETLNLLRSIFPLRTCSRKDFDQRKRPCLNYHIGRCLAPCFGKVSRDEY 187 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 M + FL G +L ++ M+QA ++E A R+R+ AL + + Sbjct: 188 MHMLKNIIAFLEGKEDDLLRRLREEMHQAAEDLEFERAAELRNRIQALEQVMEKQKVVST 247 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D ++ N C+Q F G+ G F L+ E +++++ F++Q+Y+ Sbjct: 248 DLEDQDVIAMARGFNQVCVQIFFIRGGKLIGREHFILEGTDEMERSEVITAFVKQYYSRS 307 Query: 298 PCPENILL----SEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----H 349 +L E EE +L ++ KV+I VPK+G+K K+IE NA Sbjct: 308 EFVPREILLQEPLESQEEEEVLSRFLKEKRKGKVEIRVPKRGDKLKLIEMVAKNALLTLE 367 Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 + ++ + + + D + AL P RIE +D S+ MG +V MVV Sbjct: 368 QLQNEQQRKKSMTEEAVLDLQRYLALEEPPWRIECFDISNTMGKESVASMVVFEGGAPKN 427 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP-KKQEYSFPSWPDVVI 468 +YR+F + V +D A M+ VL RRFS+ + + + F PD++I Sbjct: 428 AEYRRFRIKT--VDGPNDFASMQEVLNRRFSRAREEAQAVEEGQLDPMSAKFAVLPDLII 485 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 +DGGKGQLS+A+ L+++ + I +AK + F E ++L LY Sbjct: 486 VDGGKGQLSSARETLRRVG-YDYIPTFGLAKENEW-----LFHESSSEPIILPRGSRSLY 539 Query: 529 FIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 +QR+RDEAHRFAIT HRK R +A S LDEI+GIGP RK LL+ FG+VK I+ ++ E Sbjct: 540 LVQRIRDEAHRFAITYHRKLRAQAQTASVLDEISGIGPKRKTALLRHFGSVKKIAEATLE 599 Query: 588 TLASIEGISKKIACKIYNHFHKNTSHT 614 LA+++G++ +IA ++ NHF T Sbjct: 600 QLAAVDGMNVEIAERVLNHFRAREKET 626 >gi|85705901|ref|ZP_01036997.1| excinuclease ABC subunit C [Roseovarius sp. 217] gi|85669489|gb|EAQ24354.1| excinuclease ABC subunit C [Roseovarius sp. 217] Length = 622 Score = 555 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 265/609 (43%), Positives = 376/609 (61%), Gaps = 15/609 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY+MLD RVLYVGKA NL+ R+ +Y + HT RI MIS+ ++ F T Sbjct: 23 SLDASPGVYRMLDAQARVLYVGKARNLRARVSNYARPSGHTGRIARMISETASMMFLTTA 82 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLE N+IK+LKPR+N+LLRDDKSFP IL+T H P + KHR + +GSY+GP Sbjct: 83 TETEALLLEQNLIKQLKPRYNVLLRDDKSFPNILVT-GHDFPMIKKHRGAKREKGSYYGP 141 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 FAS AV +T+ LQR F LR+C D++F RTRPCL QIKRC+ PC G+IS Y V Sbjct: 142 FASAGAVNRTLAQLQRVFQLRNCTDAMFESRTRPCLQHQIKRCTAPCVGKISRADYAVQV 201 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241 +A+++LSG + ++EK+A M +A ++E A RDR+ A++ +Q + Sbjct: 202 SDAERYLSGRSTEIQEKLAAQMAEAAEAMEFERAAALRDRIKAMTQVQTAQGINPRTVDE 261 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D +L+ AC+Q F GQN G F+ + + A+ L F+ QFY K P Sbjct: 262 ADVIALHLENGQACVQVFFIRGGQNWGNQDFYPRVGVDVEEAEALEAFIGQFYDSKEPPR 321 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 +LLS E+ L++ + + G KV +TVP +GEK ++I+ A+ NA S +KL+ + Sbjct: 322 GLLLSHPIEDADLMQQALSDKLGRKVTLTVPLRGEKAELIDAAMRNARESLARKLAETAT 381 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 +L+ + F L P+RIE+YDNSHI G AVG M+V G G +KNQYRKFN+ + Sbjct: 382 QGKLLRGLAEAFDLAGPPQRIEVYDNSHIQGTDAVGAMIVAGPEGMMKNQYRKFNIRGDA 441 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 + DD MM+ VL RRF +L+K + + S WPD++++DGG GQ+S Sbjct: 442 LTPGDDFGMMKEVLTRRFKRLLKED---------PDRSQGQWPDLLLIDGGAGQVSVVAS 492 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 +++++ VE+ I ++ +AKG R G E+F + L DP+LYF+QRLRDEAHRFA Sbjct: 493 IMREMGVED-IPMVGVAKGVDRDHGKEEFHRVGKHPMALRHNDPVLYFVQRLRDEAHRFA 551 Query: 542 ITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 I THR +R KA +PLDE+ GIG RKR LL FG+ K +SR++ L ++EG+S +A Sbjct: 552 IGTHRAKRAKAVGATPLDEVPGIGAARKRALLAHFGSAKAVSRANLADLRAVEGVSDAMA 611 Query: 601 CKIYNHFHK 609 K+Y+ FH+ Sbjct: 612 QKLYDFFHE 620 >gi|319405510|emb|CBI79129.1| excinuclease ABC subunit C [Bartonella sp. AR 15-3] Length = 659 Score = 555 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 307/611 (50%), Positives = 419/611 (68%), Gaps = 5/611 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +P PGVY+ML+ G +LYVGKA NL+KR+ Y H + H +RI MI + N++ F VT Sbjct: 48 KNLPHKPGVYRMLNENGDILYVGKARNLKKRVSHYSHEHGHNNRIIRMIRETNHMEFVVT 107 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL PRFN+LLRDDK+ PYI+ITD H+ PALYKHR + T + YFG Sbjct: 108 HTETEALLLEANLIKRLHPRFNVLLRDDKTLPYIIITDDHRAPALYKHRGARTRKAHYFG 167 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS +AV +TIN LQR F LR+C DSV + TRPCLL+QIKRCS PCT EIS+ Y++ Sbjct: 168 PFASSEAVTQTINVLQRAFLLRTCTDSVLENCTRPCLLYQIKRCSAPCTYEISNSDYLQL 227 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V +AK FLSG + ++K + + M++A D+E AI +R+RL+ALS+IQ+ Sbjct: 228 VKKAKAFLSGKSQSIKNDMVQAMHKAAENLDFERAITYRNRLSALSYIQSRQSINPQTVK 287 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F++ + + CIQ FF GQN G ++F K D ++++IL+ FL QFY +KP P Sbjct: 288 EADVFAIAQQEGMTCIQVFFFRMGQNWGNRSYFPKADPSFSSSEILASFLIQFYDNKPIP 347 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + ILLS EE L+ + + +K+ +++PKQGE++ ++ A NAH + +KLS Sbjct: 348 KLILLSNTIEEEILITQALSLKANHKIVLSLPKQGERKALVNHAYTNAHEALQRKLSETS 407 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 +H+ +L K F L H P+RIE+YDNSHIMG +AVG M+VV + GFVKNQYRKFN+ Sbjct: 408 AHKKLLHSIVKTFQLSHTPRRIEVYDNSHIMGTNAVGVMIVVDQTGFVKNQYRKFNICST 467 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPK-KQEYSFPSWPDVVILDGGKGQLSAA 479 ++K DD MM+ V+ERRF +L+K N + E S P WPD++++DGG+GQ++ Sbjct: 468 NIKPGDDLGMMKEVIERRFLRLLKTYGLPNKNKNIGYEDSCPPWPDLILIDGGQGQINIT 527 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 VL +L++ + IT+I IAKG R AG+E+FFVK + L +PILYF+QRLRDEAHR Sbjct: 528 NAVLSELDLGDFITVIGIAKGVDRKAGLERFFVKGKQPFTLPPDNPILYFLQRLRDEAHR 587 Query: 540 FAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FA+ TH+ +RKK A +PLDEI IGP RKR LL FG+ K +SR+S E L + GISK Sbjct: 588 FAVETHKAKRKKEAFKNPLDEIEKIGPTRKRALLNYFGSSKAVSRASVEDLTKVVGISKA 647 Query: 599 IACKIYNHFHK 609 IA KI+N+F+K Sbjct: 648 IAYKIHNYFNK 658 >gi|1174921|sp|P32966|UVRC_PSEFL RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|472402|gb|AAA98758.1| UVR excinuclease subunit C [Pseudomonas fluorescens] Length = 607 Score = 555 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 217/609 (35%), Positives = 333/609 (54%), Gaps = 25/609 (4%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+M D R+LYVGKA NL+ R+ SY + ++ +I I T+T E E Sbjct: 17 RPGVYRMFDSDTRLLYVGKAKNLKSRLASYFRKTGLAPKTAALVGRIAQIETTITANETE 76 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE +IK +P +NILLRDDKS+PY+ ++D P HR + +G YFGP+ S Sbjct: 77 ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDGE-FPRFSIHRGAKKQKGKYFGPYPSA 135 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 A+ ++++ LQ+TF +R C DS +++RTRPCL +QIKRC PC G + +E Y E V + Sbjct: 136 GAIRESLSLLQKTFMVRQCEDSYYKNRTRPCLQYQIKRCKAPCVGLVEAEVYAEDVRHSV 195 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246 FL G ++ L ++++ M QA D+E A RD+++ L +Q+ +D + Sbjct: 196 MFLEGRSNALTDELSAGMEQAASTLDFEKAAELRDQISLLRRVQDQQSMEGGSGDVDVVA 255 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP---CPENI 303 + N AC+ G+ G+ FF + E A+++S FL Q++ P P + Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVAEVMSAFLGQYFLSSPERDLPSEL 315 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 +++ E+ L + + G ++ I+ +G + + + A+ NA ++ + +L+ Sbjct: 316 IVNVVHEDFPALIAAIQELRGRELSISHRVRGTRARWQQLAVTNAEQALSARLANRQHVA 375 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 + + L P+R+E YD SH G + V VV G G +K+ YR++N+ V Sbjct: 376 ARFEALAEVLNLDEPPQRLECYDISHSSGEATVASCVVFGPEGPLKSDYRRYNIEG--VT 433 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD A M L RRFS+L E L PD++++DGGKGQLS A+ VL Sbjct: 434 AGDDYAAMHQALTRRFSKLKDGEGKL--------------PDILLVDGGKGQLSMARDVL 479 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542 +L V + I ++ +AKG R G E ++ L P L+ IQ++RDEAHRFAI Sbjct: 480 NELAVPDLI-LLGVAKGATRKTGFETLYLNDAAHEFTLKGDSPALHLIQQIRDEAHRFAI 538 Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR K S L+++ G+GP R+R LL+ FG ++ +SR+S E +A GISKK+A Sbjct: 539 TGHRARRGKTRRTSTLEDVAGVGPKRRRDLLKHFGGLQELSRASIEEIAKAPGISKKLAE 598 Query: 602 KIYNHFHKN 610 IY + H Sbjct: 599 LIYANLHSE 607 >gi|58040698|ref|YP_192662.1| excinuclease ABC subunit C [Gluconobacter oxydans 621H] gi|81351338|sp|Q5FNP1|UVRC_GLUOX RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|58003112|gb|AAW62006.1| UvrC, excinuclease ABC subunit C [Gluconobacter oxydans 621H] Length = 645 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 269/613 (43%), Positives = 369/613 (60%), Gaps = 17/613 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + + +P PGVY+ML G VLYVGKA +L+KR+ SY+ N R+ M+S ++ Sbjct: 34 ALKTIPYSPGVYRMLSEKGEVLYVGKALSLKKRVSSYIRINQLPERLRRMVSMTVSMEIV 93 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 +T TE +ALLLEAN IKR+KPRFNILLRDDKS+P++++T+ H+ P + K R +Y Sbjct: 94 ITRTEADALLLEANYIKRMKPRFNILLRDDKSYPWLMLTESHEFPQITKQRGKPVKGATY 153 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GPFA+ AV +T+N +QR+F LRSC+D+V RTRPCLL+QIKRCS PC IS E Y Sbjct: 154 WGPFANAWAVNQTLNLVQRSFLLRSCSDAVLNSRTRPCLLYQIKRCSAPCVDRISKEDYA 213 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E V EA++FLSG + L++++ M QA+ + +YE A RDR+ + IQ + Sbjct: 214 ELVSEARQFLSGHSTELQQRLVAEMEQASQELNYERAASIRDRIRGFASIQGSSTINPTS 273 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 N D +++ +CIQ F +N G F+ E T A +LS F+ QFY +KP Sbjct: 274 INDADIMTIWQEAGQSCIQVFFIRGSRNNGNRAFYPAHAEEETAADVLSAFMIQFYDNKP 333 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P +IL++ E E L+E + + G KV+I P++GEK+ ++E A +NA + +KL+ Sbjct: 334 PPPSILVNCELPEPKLVEEALSIRRGQKVEILRPQRGEKKDVVEHAALNAREALERKLAE 393 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + +L+ + F LP IP+RIE YDNSHIMG + G MVV G GF K YRK+ + Sbjct: 394 NTGQRRLLEGVAEVFGLPEIPQRIETYDNSHIMGQAPYGVMVVGGPEGFNKRAYRKYAIK 453 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 DD MMR V+ERRF +N E WPD++++DGG GQ +A Sbjct: 454 GPVTPG-DDFGMMREVMERRFGHRSENGERPE-----------DWPDLLLIDGGLGQFNA 501 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 + VL L V I I++IAKGP R AG E FF + L RDP+LY++QRLRDEAH Sbjct: 502 VRAVLADLGVTG-IPIVAIAKGPDRDAGREWFFTETKSPFQLPPRDPVLYYLQRLRDEAH 560 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAITTHR R K S LD + GIG RK+ LL FG+ K + ++S E L + GIS Sbjct: 561 RFAITTHRAGRSKGLRSSELDHVPGIGAARKKALLNHFGSAKSVRQASLEELENAPGISS 620 Query: 598 KIACKIYNHFHKN 610 A IY HFH Sbjct: 621 STATAIYGHFHPE 633 >gi|167648233|ref|YP_001685896.1| excinuclease ABC subunit C [Caulobacter sp. K31] gi|167350663|gb|ABZ73398.1| excinuclease ABC, C subunit [Caulobacter sp. K31] Length = 634 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 272/616 (44%), Positives = 381/616 (61%), Gaps = 20/616 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P+ PGVY+M+ VLYVGKA +L+KR+ Y HT+RI HM+ ++ F T Sbjct: 29 RLPDSPGVYRMIGEDDEVLYVGKAKSLKKRVVQYAQGRFHTNRIAHMVDATRSMEFVTTR 88 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE N+IK LKPRFN+LLRDDKSFP I+I H P L KHR + TI+G YFGP Sbjct: 89 TEADALLLEINLIKSLKPRFNVLLRDDKSFPEIMIRRDHDAPQLRKHRGAHTIKGDYFGP 148 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 FAS AV +T+N+LQ+ F LRSC+DSV+ R+RPC+L QIKRC+ PCTG I + Y V Sbjct: 149 FASAWAVNRTLNTLQKAFLLRSCSDSVYETRSRPCMLHQIKRCAAPCTGLIGKDDYQALV 208 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241 +A+ FL G + + +A+ M +A ++E A RDR+ AL+ + + + Sbjct: 209 DQAEDFLRGKSRAVMATMAKAMEEAAEDLEFERAARLRDRIRALAAVAQESQINPETVDE 268 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFL------KTDSESTNAQILSYFLRQFYT 295 D +L+ AC+Q FF GQN G +F + + S AQ ++ FL QFY Sbjct: 269 ADVVALHIEGGQACVQVFFFRAGQNWGNRAYFPRITGAAEEEGVSEEAQAMTAFLGQFYD 328 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 DKP P IL + E E LL +F + G KV+I PK+GEK ++ AL NA + +K Sbjct: 329 DKPIPRLILTNIEPAERDLLAEAFCLKSGRKVEIATPKRGEKADLVGHALTNAREALGRK 388 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 ++ + +L + F L P+RIE+YDNSHI G +AVG M+V G GF+K QYRKF Sbjct: 389 MAEGSAQTKLLAGVGEAFGLDGPPERIEVYDNSHIQGTNAVGGMIVAGPEGFMKGQYRKF 448 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ ++ DD MM+ VL+RRF++L+K EE + + PD+V++DGGKGQ Sbjct: 449 NIKSTELTPGDDYGMMKEVLKRRFARLVKEEEEGDSSAR---------PDLVLVDGGKGQ 499 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 L A V+ L V++ I ++ +AKGP R AG+E+FF+ +L + P+LY++QRLRD Sbjct: 500 LDAVIEVMADLGVDD-IAVVGVAKGPDRDAGLERFFMPDKTPFMLEPKSPVLYYLQRLRD 558 Query: 536 EAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFAI HR RR +PLDEI G+GP RKR LL +FG+ K +SR+ E L +EG Sbjct: 559 EAHRFAIGAHRTRRSMDLKKNPLDEIEGVGPGRKRALLNAFGSAKGVSRAGVEDLMKVEG 618 Query: 595 ISKKIACKIYNHFHKN 610 +S+ +A +I+ F K+ Sbjct: 619 VSQPLAERIHAFFRKS 634 >gi|114328891|ref|YP_746048.1| excinuclease ABC subunit C [Granulibacter bethesdensis CGDNIH1] gi|119367654|sp|Q0BPX7|UVRC_GRABC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|114317065|gb|ABI63125.1| excinuclease ABC subunit C [Granulibacter bethesdensis CGDNIH1] Length = 644 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 267/614 (43%), Positives = 369/614 (60%), Gaps = 14/614 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P+ PGVY+MLD G LYVGKA +L+KR+ SY + R+ M+S+ ++ Sbjct: 37 LKLLPDRPGVYRMLDGQGEALYVGKARSLKKRVASYTQIHRLPERLRRMVSETVSMEIVT 96 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGSY 121 T TE EALLLEAN+IKRLKPRFNI+LRDDKS+P++++T+ H P + KHR + SY Sbjct: 97 THTEAEALLLEANLIKRLKPRFNIVLRDDKSYPWLMLTEDHAFPQIMKHRGAQTRKAASY 156 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GPFAS AV +T+ ++QR F LRSC+DSVF +R+RPCLLFQI+RCS PC IS E Y Sbjct: 157 WGPFASAWAVNQTVTAMQRIFLLRSCSDSVFANRSRPCLLFQIRRCSAPCVDRISQEDYA 216 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E V +A+ FLSG ++ +AR M QA ++E A RDR+ L+H+Q Sbjct: 217 ELVDQARAFLSGRGTEIQRDLARQMEQAAEALEFERAAAIRDRIRGLTHVQGTAVVNPAS 276 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D +++ + +C+Q F G N G F+ S T +L F+ QFY DKP Sbjct: 277 IGNADVIAVWQDAGQSCVQVFFIRGGHNNGNRAFYPAHTSAETAQDVLGAFIAQFYDDKP 336 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P +LL+ E L+ + + G +V++ VP +GEKR ++ A NA + +KL+ Sbjct: 337 PPPLLLLNHTIAEQELVSEALSLKAGRRVELHVPVRGEKRAVVAHAETNAREALERKLAE 396 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 +L + F LP P RIEIYDNSHIMG + G MVV G G+ K+ YRKF++ Sbjct: 397 SAGQNRLLDGVAELFDLPTRPNRIEIYDNSHIMGTNPYGVMVVAGPEGWNKSAYRKFSIR 456 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 DD AMMR +LERRFS+ +K +WPD+V++DGG GQLSA Sbjct: 457 GPITPG-DDFAMMREMLERRFSRGLKERAEGPEGE-------ANWPDLVLIDGGAGQLSA 508 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 +G+L ++ V + + +++IAKGP R AG E F + L RDP+LY++QRLRDEAH Sbjct: 509 VRGILDEIGVTD-VKLVAIAKGPDRDAGREWFHTEGQAPFQLPPRDPVLYYLQRLRDEAH 567 Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAITTHR R K S LD+I+GIG RKR LL FG+ + + ++ L + GISK Sbjct: 568 RFAITTHRAGRSKTLVRSELDDIDGIGAARKRALLNHFGSARGVKQAGLAALEATPGISK 627 Query: 598 KIACKIYNHFHKNT 611 + A +IY HFH Sbjct: 628 ETARRIYAHFHPGA 641 >gi|254786407|ref|YP_003073836.1| excinuclease ABC subunit C [Teredinibacter turnerae T7901] gi|237683988|gb|ACR11252.1| excinuclease ABC, C subunit [Teredinibacter turnerae T7901] Length = 619 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 231/614 (37%), Positives = 340/614 (55%), Gaps = 23/614 (3%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVYQM D G +LYVGKA NL+ R+ SY ++ T + ++S+I NI TV Sbjct: 23 LKNLTTKPGVYQMYDAEGGILYVGKAKNLKNRVSSYFRNSGLTIKTQALVSRIRNIEITV 82 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N+IK KP FNILLRDDKSFPYI ++ P L HR + G YF Sbjct: 83 TPSEAEALVLEHNLIKSQKPPFNILLRDDKSFPYIFLSSGEPHPRLALHRGAKKKVGRYF 142 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF +V AV +++N LQ+TF +R C DSV+R+RTRPCLL+QI+RCSGPC +S +Y Sbjct: 143 GPFPNVSAVRESLNFLQKTFGVRQCEDSVYRNRTRPCLLYQIERCSGPCVEAVSEREYAA 202 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR- 241 V + FL G N +L++ +A M QA+ +E A ++RDR+ AL +Q + Sbjct: 203 DVEQTVLFLEGKNDSLQKNLAGAMEQASANLAFEQAALYRDRITALRQVQAQQVIESGQM 262 Query: 242 -MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK--- 297 MD + AC+ + G+ G+ ++ K E+ A +LS F+ Y Sbjct: 263 NMDVVACAAEAGAACVHILYVRQGRVVGSKNYYPKDRLENDEATVLSAFISHHYLGGTSM 322 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P ++++S ++ + + +V+IT + + K + AL A + KL+ Sbjct: 323 DIPPSVIVSHALDDEKAIGDAVALNSNKQVQITSNVRTYRAKWVAMALQAARLNLRSKLN 382 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + S + K P+RIE +D SH G V VV +NG K+ YR+FN+ Sbjct: 383 SAQSLLQRFEQLQKIMGFDEAPERIECFDISHSSGEKTVASCVVFDQNGPRKSDYRRFNI 442 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + DD A M L RR+S+L K + L PD++++DGGKGQL Sbjct: 443 EG--ITAGDDYAAMEQALNRRYSRLQKEGKKL--------------PDLLLIDGGKGQLG 486 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A VL +L ++ +T++ +AKG R AG E G V+ P L+ IQ++RDEA Sbjct: 487 KAIEVLAELGIQ-EVTLLGVAKGTTRKAGFETLVKPDGTEQVMAADSPALHLIQQVRDEA 545 Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT H++RR +A S L+ I GIGP R+R +L FG ++ + R+S + LA + GIS Sbjct: 546 HRFAITGHKQRRDQARRTSTLENIPGIGPKRRREMLHYFGGLQEVMRASIDDLAKVPGIS 605 Query: 597 KKIACKIYNHFHKN 610 KK+A ++Y+ H Sbjct: 606 KKMAEEVYSALHSE 619 >gi|163794446|ref|ZP_02188417.1| Nuclease subunit of the excinuclease complex [alpha proteobacterium BAL199] gi|159180170|gb|EDP64693.1| Nuclease subunit of the excinuclease complex [alpha proteobacterium BAL199] Length = 649 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 278/620 (44%), Positives = 395/620 (63%), Gaps = 24/620 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 MP PGVY+MLD G VLYVGKA +L+KR+ +Y H +RI MIS+ + T Sbjct: 39 TMPSAPGVYRMLDEDGDVLYVGKARSLKKRVINYTHPAKLPNRIFRMISETARMEVVTTH 98 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TEVEALLLE+N+IKRLKPR+N+LLRDDKSFP+IL+T H P + KHR + + +G YFGP Sbjct: 99 TEVEALLLESNLIKRLKPRYNVLLRDDKSFPHILMTGDHTYPQIVKHRGARSRKGDYFGP 158 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 FAS AV +TI +LQR F LR+C DSVF RTRPCL +QIKRCS PC G + +Y E V Sbjct: 159 FASAGAVNRTIAALQRAFLLRNCTDSVFSARTRPCLQYQIKRCSAPCVGFVEQAEYAELV 218 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 EA++FL+G +H++++++A M +A ++E+A I+R+R+ AL+ IQ H D + Sbjct: 219 DEARRFLTGRSHDVQQQLAVKMQEAAEALEFETAAIYRNRIRALTAIQAHQDINVDGIEE 278 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D +L+ +CIQ FF G N G +F D E+ + +LS FL QFY DKP P Sbjct: 279 ADVIALHGEGGHSCIQVFFFRAGSNFGNRAYFPSHDKETEDGDVLSAFLGQFYDDKPPPW 338 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 IL+S E SL+ + + G KV + P++G KRK++E A +NA + ++++ S Sbjct: 339 LILISHPVPEASLMAEALSTRAGRKVVLLAPQRGSKRKLMEHATLNAREALGRRMAESAS 398 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP-- 419 + +L+ + F L P+R+E+YDNSH G ++VG M+V G GF+K YRKFN+ Sbjct: 399 QRRLLEGVAQVFGLEATPERVEVYDNSHTGGTNSVGGMIVAGPEGFIKAAYRKFNIRNVD 458 Query: 420 --------NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 ++++ DD AMMR VL RRF++ +K + E +WPD+V++DG Sbjct: 459 DGAQDDRVDELEAGDDYAMMRQVLIRRFARALKED---------PERKSGTWPDLVLIDG 509 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 G L+ A V +L +++ + + SIAKGP R AG E+FF+ E +L RDP+LYF+Q Sbjct: 510 GAAHLAVAHEVFAELGIDD-LAVASIAKGPDRDAGRERFFMAGREPFMLERRDPVLYFLQ 568 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 RLRDEAHRFAI THR RR KA +PLDEI+GIG RK+ LL FG+ + ++R+ L Sbjct: 569 RLRDEAHRFAIETHRARRTKALGGNPLDEISGIGARRKKALLHHFGSARGVARAGLADLN 628 Query: 591 SIEGISKKIACKIYNHFHKN 610 +++GIS +A ++Y+ FH + Sbjct: 629 AVDGISTAVAKRVYDFFHDD 648 >gi|220932457|ref|YP_002509365.1| excinuclease ABC, C subunit [Halothermothrix orenii H 168] gi|219993767|gb|ACL70370.1| excinuclease ABC, C subunit [Halothermothrix orenii H 168] Length = 607 Score = 553 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 221/621 (35%), Positives = 350/621 (56%), Gaps = 33/621 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 +++P+ PGVY M D G V+YVGKA +L++R++SY NHT + M+ I + + Sbjct: 7 QLKRLPDRPGVYLMKDETGEVIYVGKAKSLRRRVRSYFRKGNHTFKTKIMVKHIADFDYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT TEVEA +LEAN+IK+ P+FNI L+DDK++PYI +T + P ++K R Y Sbjct: 67 VTDTEVEAFILEANLIKKYNPKFNIRLKDDKTYPYIKVTVQEDFPRIFKTRLVKNDGNRY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSEK 179 FGPF V+A+ KTI+ L+ F LR+C ++ + RPCL + I +C GPC G I Sbjct: 127 FGPFTDVNAIYKTIDVLKDLFSLRTCKKNLEAGKPEKRPCLNYHIGKCVGPCIGAIDRNS 186 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y E V FLSG L ++ + M QA K+++E A RD + AL +I + Sbjct: 187 YRELVDRVCLFLSGKQDELINEVEKEMYQAAEKKNFEKAARFRDAVRALKNISAQQKVMS 246 Query: 240 N---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + D +L + AC+Q F G+ G F ++ E +N I+ FL+Q+Y Sbjct: 247 SKNINQDIIALVEEEGEACVQVLFIRNGRLIGQEYFLMEGVDEESNTDIMVSFLQQYYEQ 306 Query: 297 KP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P P+ I+++ +T LLE ++ G KVKI +P +GEK++++E A NA ++ ++ Sbjct: 307 APEIPQEIVINTHVSQTELLEDWLQQKKGKKVKILIPLKGEKKRLVEMASKNASQNLKKE 366 Query: 356 L----STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 L + ++ L + L P IE +D S+I G V MVV + K Sbjct: 367 LIRRKYQKQRNEKALDQLVEYLVLSSKPVHIEGFDISNIQGSDPVASMVVFKDGVPSKAD 426 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YR+F + V +D AMM+ V++RR+S+L++ E +L PD++++DG Sbjct: 427 YRRFRIKT--VSGPNDFAMMQEVVKRRYSRLLEEEGDL--------------PDLILIDG 470 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GKGQL+AA VLK++N++ + I +AK + E F + E +++ + P L+ +Q Sbjct: 471 GKGQLNAALEVLKEMNLD-YLDIAGLAKREE-----EVFLPGQKEPVIIPRKSPALHLLQ 524 Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 R+RDEAHRFA++ HRK R + ++ LDEI G+GP R++ LL FG++ I +++ L Sbjct: 525 RVRDEAHRFAVSYHRKLRSRRLTHTMLDEIPGVGPKRRKALLSHFGSLGAIRKATIGQLK 584 Query: 591 SIEGISKKIACKIYNHFHKNT 611 ++GIS K A IY++ ++T Sbjct: 585 EVDGISNKTARVIYDYLREHT 605 >gi|71907666|ref|YP_285253.1| excinuclease ABC subunit C [Dechloromonas aromatica RCB] gi|90111065|sp|Q47EE8|UVRC_DECAR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|71847287|gb|AAZ46783.1| Excinuclease ABC subunit C [Dechloromonas aromatica RCB] Length = 603 Score = 553 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 224/611 (36%), Positives = 329/611 (53%), Gaps = 25/611 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + E PGVY+MLDI G VLYVGKA NL+KR+ SY N + RI HM+SQI +I T T Sbjct: 11 TLTELPGVYRMLDIGGNVLYVGKAKNLKKRVASYFRENLSSPRIAHMVSQIASIETTATR 70 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLE N+IK L PR+NIL RDDKS+PYI+++ K P L R + + YFGP Sbjct: 71 TEAEALLLENNLIKSLAPRYNILFRDDKSYPYIVLSKG-KFPRLGFFRGNPDRKADYFGP 129 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + S AV +I+ +Q+ F LR+C D+VF +R+RPCLL+QIKRCSGPC G IS++ Y + Sbjct: 130 YPSSWAVRDSIHLMQKMFRLRTCEDTVFSNRSRPCLLYQIKRCSGPCVGFISADDYAADI 189 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 A FL G + ++ ++M +A+ K +E A + RD++ +L +Q + Sbjct: 190 QLAAMFLLGKQQEVTRRLTKSMEEASAKLAFEQAAVFRDQIQSLHQVQEKQFVSSSKGED 249 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 +D C+ G++ G FF ++S + + F+RQ Y P P Sbjct: 250 VDVLVAIKEAGQLCVNLAMVRGGRHLGDRPFFPTNAADSEPSDACAAFIRQHYAAHPAPA 309 Query: 302 NILLSEEAEETS--LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 IL E E++ + G V + + + +E A+ NA + K Sbjct: 310 RILSYPLPSEDEAGETEVALAELAGRPVPVQEGRGATHKAWVEMAIQNARLAILAKNQAT 369 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + L LP RIE +D SH MG + V VV N K+ YR+FN+ Sbjct: 370 AQQEQRLAALQDALQLPEPIARIECFDISHTMGEATVASCVVYEGNRMKKSDYRRFNIRD 429 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 ++ DD A MR + RR+ + E + PD++++DGGKGQ+S+A Sbjct: 430 --IQAGDDYAAMRQAVSRRYDSIAGGE--------------GTAPDLILIDGGKGQVSSA 473 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQRLRDEAH 538 L L + + +I +AKG +R G+E F + E L L + P L+ IQ +RDEAH Sbjct: 474 FSALADLGLT-HLPMIGVAKGEERKPGLETLIFPEGREPLQLPPQHPALHLIQEIRDEAH 532 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR +R KA S L+ + GIGP R++ L+ FG + + +S + LA + G+S+ Sbjct: 533 RFAITGHRAQRGKARKTSKLESLPGIGPARRKALVARFGGLPGVLAASIDQLAEVPGVSR 592 Query: 598 KIACKIYNHFH 608 ++A KI++ H Sbjct: 593 EMAEKIHSALH 603 >gi|89095317|ref|ZP_01168236.1| excinuclease ABC subunit C [Oceanospirillum sp. MED92] gi|89080436|gb|EAR59689.1| excinuclease ABC subunit C [Oceanospirillum sp. MED92] Length = 613 Score = 553 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 220/614 (35%), Positives = 338/614 (55%), Gaps = 23/614 (3%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 +Q+ + PGVYQM D ++LY+GKA NL+ R+ SY + + + ++S+I +++ TV Sbjct: 16 LKQLTKRPGVYQMYDAQEKLLYIGKAKNLKNRVSSYFRATGLSVKTRSLVSKIADVQITV 75 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EALLLE N+IK +P +NILLRDDKS+PYI I+DK PA+ R + G YF Sbjct: 76 TNSETEALLLEQNLIKEYRPPYNILLRDDKSYPYIFISDKDTYPAVRFSRGAKRKSGKYF 135 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ S AV ++N LQ+ F +R C +S F++R+RPCL +QIKRC+ PC IS ++Y E Sbjct: 136 GPYPSGGAVRDSLNLLQKIFRIRQCEESFFKNRSRPCLQYQIKRCTAPCVEAISPQEYQE 195 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YN 240 + A FL G N + ++IA+ M A+ + ++E A ++RD+L +L +Q Sbjct: 196 DIKHAAMFLEGKNKAVMDEIAQEMEAASEQLNFEQAALYRDQLVSLQKVQEQQYVTGLQG 255 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--TDKP 298 D C+ F G+ G+ + + K E T +I+S F+ Q+Y + Sbjct: 256 DADVIGCDLQPGGVCLHMLFVRGGRVIGSKSHYPKVSIEETRDEIVSAFIAQWYLGAQRE 315 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P I+ E + L+ + + KV ++ +GE+ + A NA + + L+ Sbjct: 316 IPAYIITPFELSDEDCLKAALAEARDKKVALSHNVRGERSGWQKLAQTNAEQQLSSYLAN 375 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + + + + L IP R+E +D SH G + V VV +NG +K+ YR FN+ Sbjct: 376 KKNIYNRYLELQELLGLDDIPTRLECFDISHSSGEATVASCVVFDKNGPLKSDYRHFNIE 435 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + DD A M L RR+S++ K E L PD++I+DGGKGQ++ Sbjct: 436 G--ITPGDDYAAMYQALHRRYSRIKKEEAKL--------------PDLLIVDGGKGQVTQ 479 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEA 537 A VL +L + ++ +I IAKGP R AG E G+ VL L+ +Q +RDEA Sbjct: 480 AMEVLDELQIA-QVLVIGIAKGPTRKAGFEVLISGDTGDETVLENDSGALHLLQHIRDEA 538 Query: 538 HRFAITTH-RKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT H +R K S L++I G+GP R+R LL+ FG ++ I R+S E +A + IS Sbjct: 539 HRFAITGHRARRGKARKRSVLEDIPGVGPKRRRELLRHFGGIQEIQRASVEEIAKVSTIS 598 Query: 597 KKIACKIYNHFHKN 610 IA +IY+ H + Sbjct: 599 LTIAEEIYSALHPD 612 >gi|86139077|ref|ZP_01057648.1| UvrABC system protein C [Roseobacter sp. MED193] gi|85824308|gb|EAQ44512.1| UvrABC system protein C [Roseobacter sp. MED193] Length = 643 Score = 553 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 265/609 (43%), Positives = 379/609 (62%), Gaps = 15/609 (2%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + + PGVY+MLD RVLYVGKA NL+ R+ +Y N + RI MI+ + F T Sbjct: 43 KTLDASPGVYRMLDSESRVLYVGKARNLRARVSNYTRPGN-SPRIERMIALTTRMMFLTT 101 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLE N+IK+LKP++N+LLRDDKSFP IL+ H L KHR + +GSYFG Sbjct: 102 RTETEALLLEQNLIKQLKPKYNVLLRDDKSFPSILVAKDHAFAQLKKHRGARKQKGSYFG 161 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFA AV +T+N LQ+ F LR C++++F RTRPCL FQIKRCS PCTGEIS E+Y Sbjct: 162 PFAGAGAVNRTLNQLQKAFLLRDCSNAMFESRTRPCLQFQIKRCSAPCTGEISEEEYSLS 221 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--- 240 V +A++FL+G + ++E++A M +A+ ++E A RDR+ AL+ +Q+ Sbjct: 222 VRDAERFLAGRSTKIQEELAAEMMKASEAMEFERAAALRDRIKALTQVQSVQGINPRGVA 281 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D L+ + AC+Q F QN G F+ + +++ + A+++ FL QFY +K P Sbjct: 282 EADIIGLHMERGQACVQVFFIRANQNWGNQDFYPRVEADMSAAEVMEAFLGQFYDNKEPP 341 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + ++LS+ E T L+E + + KV+I VP +GEK +++ A+ NA S ++++ Sbjct: 342 KQLILSDAIENTDLMEEALSGKAERKVEILVPLRGEKTELVAGAVRNARESLARRMAESA 401 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 + +LK + F L P+RIE+YDNSHI G +AVG M+V G GFVKN YRKFN+ + Sbjct: 402 TQARLLKGLAEAFGLKAPPQRIEVYDNSHIQGTNAVGGMIVAGPEGFVKNAYRKFNIKGD 461 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 D+ DD MM+ VL RRFS+L K + WPD++++DGG GQ+SA Sbjct: 462 DLVPGDDFGMMKEVLNRRFSRLKKED---------PVREKGLWPDLLLIDGGAGQVSAVA 512 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 ++ + VE+ I ++ +AKG R G E+F + A L DP+LYF+QRLRDEAHRF Sbjct: 513 EIMAEHGVED-IPMVGVAKGVDRDHGKEEFHRQGENAFALQRNDPVLYFVQRLRDEAHRF 571 Query: 541 AITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI THR +R KA +PLDE+ G+G RKR LL+ FG+ K +SR+ L +++GIS + Sbjct: 572 AIGTHRAKRAKAVGATPLDEVPGVGAGRKRALLKHFGSAKAVSRADLLDLKAVDGISNAL 631 Query: 600 ACKIYNHFH 608 A IY+ FH Sbjct: 632 AETIYDFFH 640 >gi|330808751|ref|YP_004353213.1| uvrABC system protein C [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376859|gb|AEA68209.1| uvrABC system protein C [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 607 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 218/609 (35%), Positives = 332/609 (54%), Gaps = 25/609 (4%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+M D R+LYVGKA NL+KR+ SY + ++ +I I T+T E E Sbjct: 17 RPGVYRMFDGDARLLYVGKAKNLKKRLASYFRKTGLAPKTAALVGRIAQIETTITANETE 76 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE +IK +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S Sbjct: 77 ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDG-AFPRLSIHRGAKKAKGRYFGPYPSA 135 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 A+ ++++ LQ+TFF+R C DS +++RTRPCL +QIKRC PC G + + Y E V + Sbjct: 136 GAIRESLSLLQKTFFVRQCEDSYYKNRTRPCLQYQIKRCKAPCVGFVEPQVYAEDVRHSV 195 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246 FL G ++ L ++++ M A + ++E A RD+++ L +Q+ +D + Sbjct: 196 MFLEGRSNALTDELSAAMEDAAVNLEFERAAELRDQISLLRRVQDQQSMEGGSGDVDVIA 255 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP---CPENI 303 + N AC+ G+ G+ FF + E A++++ FL Q+Y P P + Sbjct: 256 AFINPGGACVHLISVRGGRVLGSKNFFPQVGIEEDVAEVMAAFLGQYYISSPERDLPAEL 315 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 +++ E+ L + K G ++ I+ +G + + + A+ NA ++ +L+ Sbjct: 316 IVNVVHEDFPALIEAIDKLRGRELTISHRVRGTRARWQQLAVTNAEQALGARLANRQHVA 375 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 + L P+R+E YD SH G + V VV G G +K+ YR++N+ V Sbjct: 376 ARFEALADVLNLDEPPQRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRYNIEG--VT 433 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD A M L RRF +L E L PD++++DGGKGQLS A+ VL Sbjct: 434 PGDDYAAMHQALMRRFGKLKDGEGKL--------------PDILLVDGGKGQLSMARDVL 479 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542 +L V + I ++ +AKG R AG E ++ L P L+ IQ++RDEAHRFAI Sbjct: 480 NELMVPDLI-LLGVAKGATRKAGFETLYLNDAAHEFTLKGDSPALHLIQQIRDEAHRFAI 538 Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR K S L+ + G+GP R+R LL+ FG ++ +SR+S E +A GISKK+A Sbjct: 539 TGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIEEIAKAPGISKKLAE 598 Query: 602 KIYNHFHKN 610 IY + H Sbjct: 599 SIYANLHSE 607 >gi|149912752|ref|ZP_01901286.1| excinuclease ABC subunit C [Roseobacter sp. AzwK-3b] gi|149813158|gb|EDM72984.1| excinuclease ABC subunit C [Roseobacter sp. AzwK-3b] Length = 622 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 261/611 (42%), Positives = 377/611 (61%), Gaps = 15/611 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+MLD RVLYVGKA NL+ R+ +Y + HT RI MI + ++ F Sbjct: 21 LKTLDSSPGVYRMLDAQARVLYVGKARNLRARVSNYARPSGHTARIDRMIRETASMMFLT 80 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N+IK+LKPR+N+LLRDDKSFP IL+T H+ P + KHR + +G Y+ Sbjct: 81 TSTETEALLLEQNLIKQLKPRYNVLLRDDKSFPNILVT-GHEFPMIKKHRGAKKEKGHYY 139 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPFAS AV +T++ LQR F LR+C D+ F RTRPCL +QIKRC+ PC G I Y Sbjct: 140 GPFASAGAVNRTLSHLQRAFQLRNCTDTQFESRTRPCLQYQIKRCTAPCVGYIDKADYAA 199 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---Y 239 V +A+++LSG + ++ K+ M +A +YE A RDR+ AL+ +Q Sbjct: 200 AVKDAERYLSGRSTEIQTKLKAEMAEAAEAMEYERAAALRDRIKALTQVQTAQGINPRTV 259 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 D +L+ K AC+Q F GQN G F+ + ++ A++L F+ QFY K Sbjct: 260 TEADILALHLEKGQACVQVFFIRAGQNWGNRDFYPRVGADVEEAEVLEAFIGQFYDSKDP 319 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 ++LS E L+ + + G KV++ VP++GEK ++++ AL NA S +K++ Sbjct: 320 ARQLILSHPIENADLMTEALSGKLGRKVELLVPQRGEKAELVDAALRNARESLARKMAET 379 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + +LK + F LP PKR+E+YDNSHI G AVG M+V G +GF+KN YRKFN+ Sbjct: 380 ATQAKLLKGLAEAFDLPDPPKRVEVYDNSHIQGAHAVGAMIVAGPDGFMKNSYRKFNIRG 439 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 +++ DD MM+ VL RRF +L+K + E WPD++++DGG GQ+SA Sbjct: 440 DELTPGDDFGMMKEVLTRRFKRLLKED---------PERDQGHWPDLLLIDGGAGQVSAV 490 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 ++++L VE+ I ++ +AKG R G E+F + L DP+LYF+QR+RDEAHR Sbjct: 491 AQIMRELGVED-IPMVGVAKGVDRDHGKEEFHRTGKRPMALQRNDPVLYFVQRMRDEAHR 549 Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAI THR +R KA +PLD+I G+G RKR LL FG+ K +SR++ L ++EG+S+ Sbjct: 550 FAIGTHRAKRAKAMGATPLDDIPGVGAARKRALLAHFGSAKAVSRANLSDLKAVEGVSEG 609 Query: 599 IACKIYNHFHK 609 +A K+Y+ FH+ Sbjct: 610 LAQKVYDFFHE 620 >gi|119370543|sp|Q607S4|UVRC_METCA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C Length = 610 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 243/612 (39%), Positives = 345/612 (56%), Gaps = 21/612 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY+MLD G V+YVGKA NL+KR+ S+ + + M++++ I TVT Sbjct: 16 TLTGAPGVYKMLDRNGEVIYVGKAKNLKKRVASHFAQRGSSPKQNAMVARVQAIEVTVTR 75 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLE +IKR KPR+NI LRDDKS+PYI ++ + P L HR S G +FGP Sbjct: 76 TEGEALLLENQLIKRHKPRYNINLRDDKSYPYIYVSTHQEFPRLAFHRGSRARPGRFFGP 135 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++ +LQ+ F +R C DS F +RTRPCL +QI+RC+GPC G + +E Y E V Sbjct: 136 FPSAAAVRDSLKTLQKIFPVRQCEDSYFVNRTRPCLQYQIERCTGPCVGLVGAETYGEDV 195 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYNRM 242 FL G L +++A+ M QA + ++E A +RD+++ L + + Sbjct: 196 TNTLLFLEGRGEALIDRLAQRMEQAAQRLEFEKAARYRDQISNLRTVLAKQLVAGEQGDL 255 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D + N+AC+ F GQ G +FF + E A +L F+ QFY DK P Sbjct: 256 DMIACAIKGNIACVHVVFVRNGQQIGDRSFFPRMQDEHDAAAVLGAFIPQFYLDKEIPRE 315 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 +LLS E E L E +Q G VKI+ +GE+ K +E A NA + T +L+++ + Sbjct: 316 LLLSHEIRELELFESVLGQQAGRPVKISWRLRGERAKRLELARANAECALTTRLASQQTI 375 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 L+ T+ L PKR+E +D SH G V VV G +K+ YR+FN+ + Sbjct: 376 ADRLRHLTEMLGLAEPPKRMECFDISHTQGDQTVASCVVFDRTGPLKSAYRRFNIEG--I 433 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD A M L RR+ ++ E PD++ +DGGKGQ+ AA Sbjct: 434 TGGDDYAAMAQALSRRYQRIRAGE--------------VEAPDILFIDGGKGQIHAAART 479 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 L +L VEN I II IAKGP R GME F + +V+ +P IQ +RDEAHRFA Sbjct: 480 LAELGVEN-IRIIGIAKGPDRKPGMETLFQTGCSDPIVVKPDNPGSLLIQHIRDEAHRFA 538 Query: 542 ITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 IT HR+RR K SPL I G+GP R++ LL+ FG ++ ISR+ E L+S+EGI++++A Sbjct: 539 ITGHRQRRAKTVTRSPLQAIAGLGPKRRQRLLRQFGGLRQISRADVEALSSVEGINRQLA 598 Query: 601 CKIYNHFHKNTS 612 +IY+ FH + + Sbjct: 599 QRIYDLFHDHGA 610 >gi|302390002|ref|YP_003825823.1| Excinuclease ABC subunit C [Thermosediminibacter oceani DSM 16646] gi|302200630|gb|ADL08200.1| Excinuclease ABC subunit C [Thermosediminibacter oceani DSM 16646] Length = 606 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 215/618 (34%), Positives = 340/618 (55%), Gaps = 31/618 (5%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTV 62 E PE PGVY M D G+V+YVGKA +L+ R++SY ++ +++ M+S I++I + V Sbjct: 8 ESFPEKPGVYIMKDKNGKVIYVGKAVSLKNRVRSYFKAGDSLPPKVSSMVSHIDDIEYIV 67 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +EVEAL+LE N+IK KP++NILL+DDK +PYI IT P + R YF Sbjct: 68 TDSEVEALILECNLIKFYKPKYNILLKDDKQYPYIKITLNEPFPRIEVVRKIKKDGARYF 127 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSEKY 180 GP+ + A+ + I+ L++ F +RSC + R + RPCL + I RC PC G + E+Y Sbjct: 128 GPYVNAGAMREAIDVLRKIFPVRSCKKDLSRVPLKERPCLNYHINRCLAPCQGNLQKEEY 187 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E + FL G L + M QA D+E+A ++R+++ AL + + Sbjct: 188 GELIKNVVMFLEGRQEALLNHLREKMEQAAQSLDFETAAVYRNQIQALQKLLEKQKIVST 247 Query: 241 RM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 M D ++ + AC+ F G+ F LK + +IL+ F++QFY Sbjct: 248 DMVDQDVIAMARGFDTACVMVFFVREGKLTEREPFILKNTDGAERKEILTSFIKQFYDTA 307 Query: 298 P-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352 P+ I+L EE ++ +E + G KVKIT+PK+GEK+++ E NA + Sbjct: 308 SFIPKEIILEEEIDDRDTIESWLSGKKGSKVKITIPKRGEKKQLAEMVAENARAYLEQRE 367 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + I +Q +++ L IP+RIE +D S+ G +V MVV E K Y Sbjct: 368 SAEERERIRNQKAMEELKISLGLEDIPRRIEAFDISNTQGSESVASMVVFEEGIPKKEDY 427 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472 RKF + V+ +D M+ + RRF + ++ +E F +PD++++DGG Sbjct: 428 RKFRIKT--VEGPNDFESMKEAVYRRFKRGLEGDE-----------KFRDFPDLLVIDGG 474 Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532 KGQL A+ L++LN++ I I +AK + F + E L+L LY +QR Sbjct: 475 KGQLRYAREALRELNLD-YIPTIGLAKEFEH-----IFIEGRDEPLILPRDSQALYLLQR 528 Query: 533 LRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDEAHRFA+T HRK R ++ S L++I GIG R++ LL++FG+++ I +++PE L+ Sbjct: 529 VRDEAHRFAVTYHRKLRTRRNLKSVLEDIPGIGEARRKALLKAFGSLEAIKKATPEELSK 588 Query: 592 IEGISKKIACKIYNHFHK 609 + G++KK A +Y +FHK Sbjct: 589 VPGMNKKAAVAVYEYFHK 606 >gi|170722539|ref|YP_001750227.1| excinuclease ABC subunit C [Pseudomonas putida W619] gi|229557935|sp|B1JB85|UVRC_PSEPW RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|169760542|gb|ACA73858.1| excinuclease ABC, C subunit [Pseudomonas putida W619] Length = 607 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 212/610 (34%), Positives = 336/610 (55%), Gaps = 25/610 (4%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 PGVY+M D R+LYVGKA NL+KR+ SY + ++ +I + T+T E Sbjct: 16 ARPGVYRMFDSETRLLYVGKAKNLKKRLASYFRKTGLAPKTAALVGRIAQVETTITANET 75 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EALLLE N+IK+ +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S Sbjct: 76 EALLLEQNLIKQWRPPYNILLRDDKSYPYVFLSDGQ-FPRLGIHRGAKKAKGRYFGPYPS 134 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 A+ ++++ LQ+ F +R C DS + +RTRPCL +QIKRC GPC G + +E+Y E V + Sbjct: 135 AGAIRESLSLLQKAFSVRQCEDSYYANRTRPCLQYQIKRCKGPCVGLVDAEEYAEDVRHS 194 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCF 245 FL G + L ++ M +A + ++E A RD++A L +Q+ +D Sbjct: 195 VMFLEGRSQQLGNELNAEMEKAAMALNFEKAAELRDQIALLRRVQDQQYMEGGSGDVDVV 254 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK---PCPEN 302 + + N AC+ G+ G+ FF + E A++++ FL Q+Y P Sbjct: 255 AAFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVAEVMAAFLSQYYLGNAERELPGE 314 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 ++++ E+ + + + G ++ I+ +G + + + A+ NA ++ +L+ Sbjct: 315 LIVNVVHEDFAAISEALQTLRGRELTISHRVRGTRARWQQLAVTNAEQALNARLANRQHM 374 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 + + L +P+R+E YD SH G + V VV G G +K+ YR+FN+ V Sbjct: 375 AARFEALAEVLGLDEVPQRLECYDISHSSGEATVASCVVFGPEGPLKSDYRRFNIEG--V 432 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD A M L RR+ ++ E L PDV+++DGGKGQL+ A+ V Sbjct: 433 TAGDDYAAMHQALTRRYGRIKDGEGKL--------------PDVLLVDGGKGQLNMAREV 478 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFA 541 +++L + +T++ +AKG R AG E ++ L +P L+ IQ++RDEAHRFA Sbjct: 479 MQELAFTD-LTLLGVAKGVTRKAGFETLYLNDVAHEFTLKGDNPALHLIQQIRDEAHRFA 537 Query: 542 ITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 IT HR RR KA S L+++ G+GP R+R LL+ FG ++ ++R+S + +A GISKK+A Sbjct: 538 ITGHRARRGKARRVSSLEDVAGVGPKRRRDLLKHFGGLQELNRASIDEIAKAPGISKKLA 597 Query: 601 CKIYNHFHKN 610 IY H Sbjct: 598 ESIYASLHSE 607 >gi|126730491|ref|ZP_01746302.1| excinuclease ABC subunit C [Sagittula stellata E-37] gi|126709224|gb|EBA08279.1| excinuclease ABC subunit C [Sagittula stellata E-37] Length = 629 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 268/606 (44%), Positives = 378/606 (62%), Gaps = 15/606 (2%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 PGVY+MLD RVLYVGKA NL+ R+ +Y N H+ RI MI + ++ F T TE Sbjct: 33 TSPGVYRMLDDHSRVLYVGKARNLKARVSNYARLNGHSRRIERMIRETASMMFLTTRTET 92 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EALLLE N+IK+LKP+FN+LLRDDKSFP I++T+ H P + KHR + + +G YFGPFAS Sbjct: 93 EALLLEQNLIKQLKPKFNVLLRDDKSFPNIIVTN-HAFPQIKKHRGAKSEKGQYFGPFAS 151 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 AV + +N LQ+ F LR+C DS F RTRPCLL QIKRCS PC G+IS E Y V +A Sbjct: 152 AGAVNRVLNQLQKAFLLRNCTDSQFEGRTRPCLLHQIKRCSAPCVGKISEEDYAASVRDA 211 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM---DC 244 ++LSG + ++EK+A +M A+ ++E A RDR+ AL+ +Q D Sbjct: 212 ARYLSGKSTEIQEKLAADMMDASEAMEFERAAALRDRIRALTQVQTAQGINPQTTAEADV 271 Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304 +LY AC+Q F QN G F+ + + A+++ FL QFY K +L Sbjct: 272 IALYMENGQACVQVFFIRANQNWGNKDFYPRVGDDVGPAEVMEAFLGQFYDQKEPARLLL 331 Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364 LS E+ L+ + + G KV+I+VP++GEK +++E AL NA S +K+S + Sbjct: 332 LSHAIEDEDLMCQALSDKLGRKVEISVPQRGEKAELVEGALRNAKESLGRKMSETATQAK 391 Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424 +L+ + F L P+RIE+YDNSHI G +AVG M+V G +GF+KNQYRKFN+ +D+ Sbjct: 392 LLRGLAEAFGLDGPPQRIEVYDNSHIQGTNAVGAMIVSGPDGFMKNQYRKFNIKGDDLVP 451 Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484 DD MM+ VL RR +L K++ + S WPD++++DGG GQ+SA +++ Sbjct: 452 GDDFGMMKEVLNRRLVRLKKDD---------PDRSKGLWPDLMLIDGGAGQVSAVAEIMR 502 Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544 + VE+ + + +AKG R G E+F A L DP+LYF+QRLRDEAHRFAI T Sbjct: 503 EQGVED-VPFVGVAKGVDRDHGKEEFHRVGERAFALRHNDPVLYFVQRLRDEAHRFAIGT 561 Query: 545 HRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 HR +R KA +PLDE+ G+G RKR LLQ FG+ K +SR++ L +++G+S+ +A +I Sbjct: 562 HRAKRAKAQMANPLDEVQGVGAARKRALLQHFGSAKAVSRANLADLKAVDGVSEALAERI 621 Query: 604 YNHFHK 609 Y FH+ Sbjct: 622 YAFFHE 627 >gi|119367679|sp|Q3SPL2|UVRC_NITWN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C Length = 689 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 291/606 (48%), Positives = 384/606 (63%), Gaps = 6/606 (0%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 P PGVY+M++ A VLYVGKA N++KR+ SY RI MI+ + T TE Sbjct: 82 PTSPGVYRMMNAARDVLYVGKAKNVRKRLSSYARPTGQVMRIARMIAATAAVEIVSTGTE 141 Query: 67 VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126 EALLLEAN+IK+L+PRFN+ LRDDKSFPYILIT H P L KHR + + G YFGPFA Sbjct: 142 TEALLLEANLIKQLRPRFNVQLRDDKSFPYILITGDHWAPQLLKHRGAQSRPGRYFGPFA 201 Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186 S AV +TI +LQR F +RSC DS F RTRPCLL+QIKRC+GPCTGEI Y V E Sbjct: 202 SAGAVGRTITALQRAFLVRSCTDSFFESRTRPCLLYQIKRCAGPCTGEIDFPGYTALVRE 261 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMD 243 A FLSG + +KE +AR M QA +E A ++RDRLAALS IQ+ D Sbjct: 262 ATDFLSGRSRAVKEDLARAMEQAAADLAFERAALYRDRLAALSAIQSQQGINPRTVEEAD 321 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303 F+++ C++ FF GQN G +F + + T ++L FL QFY DKP P I Sbjct: 322 VFAIHQEGGYFCVEVFFFRTGQNWGNRAYFPRAEKSFTPEEVLGSFLAQFYDDKPPPRLI 381 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 LLS EE+ LL + + G KV ++ P++GEK++++ AL NA + +KL+ + Sbjct: 382 LLSHRIEESELLAHALSIKAGCKVVVSTPQRGEKKELVAHALTNAREALGRKLADTATQS 441 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 +L+ LP P+R+E+YDNSHI G +AVG M+V G GF+KNQYRKFN+ + Sbjct: 442 RLLQGLAALLGLPQPPQRVEVYDNSHIQGANAVGAMIVAGPEGFLKNQYRKFNIRSESLT 501 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD AMMR VLERRF +L+ ++ + ++ S P WPD+VI+DGG GQL+AA+GV+ Sbjct: 502 PGDDYAMMREVLERRFKRLLT-QKAADSRAAAEQDSAPQWPDLVIIDGGLGQLNAARGVV 560 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 L + R++++++AKGP R AG E F+ A+ L RDP+LYFIQRLRDEAHRF I Sbjct: 561 DALGLS-RVSLMAVAKGPDRDAGRETLFLPDRPAIKLEPRDPVLYFIQRLRDEAHRFVIG 619 Query: 544 THRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 +HRK R+K L E+ GIGP RKR LL FGT+K I R+S L + GIS + A + Sbjct: 620 SHRKLRRKDIREAGLQEVPGIGPARKRALLHHFGTLKEIERASLADLGKVPGISAESARR 679 Query: 603 IYNHFH 608 I++ FH Sbjct: 680 IFDFFH 685 >gi|323138227|ref|ZP_08073299.1| excinuclease ABC, C subunit [Methylocystis sp. ATCC 49242] gi|322396479|gb|EFX99008.1| excinuclease ABC, C subunit [Methylocystis sp. ATCC 49242] Length = 662 Score = 552 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 284/612 (46%), Positives = 391/612 (63%), Gaps = 10/612 (1%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + P PGVY+M+ G VLYVGKA N++KR+ SY H +RI MIS ++ F Sbjct: 57 KHAPNSPGVYRMIAENGEVLYVGKAKNVRKRVASYTRLAGHVNRIARMISATASMMFISV 116 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE +ALLLEAN+IK+LKPRFN+L+RDDKSFPYILI H+ P + KHR + +G YFG Sbjct: 117 ETETDALLLEANLIKQLKPRFNVLMRDDKSFPYILIAKDHEAPQITKHRGARVRKGQYFG 176 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFASV AV + +N+L+R F LRSC+ S + +RTRPCLL+QIKRC+GPCTGEIS E Y E Sbjct: 177 PFASVWAVNRALNALERAFLLRSCSQSFYDNRTRPCLLYQIKRCAGPCTGEISIEDYKEL 236 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EA FLSG + +++E +AR M A + ++E A RDR++ALS +Q Sbjct: 237 VREACDFLSGKSRSVREHLAREMTDAAERLEFERAARLRDRISALSAVQGAQGVNPRTIE 296 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F++ + CI+ FF QN G ++F + D+ T A++L FL QFY + P Sbjct: 297 EADVFAIAKDAGRFCIEAFFFRAFQNWGNRSYFPRADASLTEAEVLDAFLAQFYDEHPSA 356 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 +L+S E+++LLE + + +V++ P++GEKR++++ AL NA ++ +KL+ + Sbjct: 357 PLVLISHAIEDSALLEEALTAKTRRRVEVIAPQRGEKRELVDHALTNARQALGRKLAEDA 416 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S Q +L + F LP P+RIE+YDNSH G A+G MVV G +GF+K YR FN+ + Sbjct: 417 SQQRLLAAIGQVFRLPETPRRIEVYDNSHTGGAQAIGAMVVAGPSGFMKAHYRTFNIRNS 476 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 ++ DD AMMR VL RRF++L K E +FPS PD+V++DGG+GQ AA+ Sbjct: 477 EITPGDDYAMMREVLTRRFARLSKETEK-----DSDPDAFPSKPDLVLIDGGRGQFEAAR 531 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 + ++ VE + + SIAKG R AG E FFV+ E L DP LYF+QRLRDEAHRF Sbjct: 532 AAMLEVGVEG-VALASIAKGRDRDAGRETFFVEGREPFRLPPHDPALYFVQRLRDEAHRF 590 Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI THR RRKK +PLDEI GIGP RKR LL +FG+ K +SR++ L GI+K Sbjct: 591 AIGTHRARRKKEFTKNPLDEIPGIGPSRKRALLLAFGSAKGVSRAALSDLEKTPGINKAT 650 Query: 600 ACKIYNHFHKNT 611 A +++HF + Sbjct: 651 ARLVFDHFQRGD 662 >gi|75676710|ref|YP_319131.1| excinuclease ABC subunit C [Nitrobacter winogradskyi Nb-255] gi|74421580|gb|ABA05779.1| Excinuclease ABC subunit C [Nitrobacter winogradskyi Nb-255] Length = 666 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 291/606 (48%), Positives = 384/606 (63%), Gaps = 6/606 (0%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 P PGVY+M++ A VLYVGKA N++KR+ SY RI MI+ + T TE Sbjct: 59 PTSPGVYRMMNAARDVLYVGKAKNVRKRLSSYARPTGQVMRIARMIAATAAVEIVSTGTE 118 Query: 67 VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126 EALLLEAN+IK+L+PRFN+ LRDDKSFPYILIT H P L KHR + + G YFGPFA Sbjct: 119 TEALLLEANLIKQLRPRFNVQLRDDKSFPYILITGDHWAPQLLKHRGAQSRPGRYFGPFA 178 Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186 S AV +TI +LQR F +RSC DS F RTRPCLL+QIKRC+GPCTGEI Y V E Sbjct: 179 SAGAVGRTITALQRAFLVRSCTDSFFESRTRPCLLYQIKRCAGPCTGEIDFPGYTALVRE 238 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMD 243 A FLSG + +KE +AR M QA +E A ++RDRLAALS IQ+ D Sbjct: 239 ATDFLSGRSRAVKEDLARAMEQAAADLAFERAALYRDRLAALSAIQSQQGINPRTVEEAD 298 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303 F+++ C++ FF GQN G +F + + T ++L FL QFY DKP P I Sbjct: 299 VFAIHQEGGYFCVEVFFFRTGQNWGNRAYFPRAEKSFTPEEVLGSFLAQFYDDKPPPRLI 358 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 LLS EE+ LL + + G KV ++ P++GEK++++ AL NA + +KL+ + Sbjct: 359 LLSHRIEESELLAHALSIKAGCKVVVSTPQRGEKKELVAHALTNAREALGRKLADTATQS 418 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 +L+ LP P+R+E+YDNSHI G +AVG M+V G GF+KNQYRKFN+ + Sbjct: 419 RLLQGLAALLGLPQPPQRVEVYDNSHIQGANAVGAMIVAGPEGFLKNQYRKFNIRSESLT 478 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD AMMR VLERRF +L+ ++ + ++ S P WPD+VI+DGG GQL+AA+GV+ Sbjct: 479 PGDDYAMMREVLERRFKRLLT-QKAADSRAAAEQDSAPQWPDLVIIDGGLGQLNAARGVV 537 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 L + R++++++AKGP R AG E F+ A+ L RDP+LYFIQRLRDEAHRF I Sbjct: 538 DALGLS-RVSLMAVAKGPDRDAGRETLFLPDRPAIKLEPRDPVLYFIQRLRDEAHRFVIG 596 Query: 544 THRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 +HRK R+K L E+ GIGP RKR LL FGT+K I R+S L + GIS + A + Sbjct: 597 SHRKLRRKDIREAGLQEVPGIGPARKRALLHHFGTLKEIERASLADLGKVPGISAESARR 656 Query: 603 IYNHFH 608 I++ FH Sbjct: 657 IFDFFH 662 >gi|53804040|ref|YP_114124.1| excinuclease ABC subunit C [Methylococcus capsulatus str. Bath] gi|53757801|gb|AAU92092.1| excinuclease ABC, C subunit [Methylococcus capsulatus str. Bath] Length = 626 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 243/612 (39%), Positives = 345/612 (56%), Gaps = 21/612 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY+MLD G V+YVGKA NL+KR+ S+ + + M++++ I TVT Sbjct: 32 TLTGAPGVYKMLDRNGEVIYVGKAKNLKKRVASHFAQRGSSPKQNAMVARVQAIEVTVTR 91 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLE +IKR KPR+NI LRDDKS+PYI ++ + P L HR S G +FGP Sbjct: 92 TEGEALLLENQLIKRHKPRYNINLRDDKSYPYIYVSTHQEFPRLAFHRGSRARPGRFFGP 151 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++ +LQ+ F +R C DS F +RTRPCL +QI+RC+GPC G + +E Y E V Sbjct: 152 FPSAAAVRDSLKTLQKIFPVRQCEDSYFVNRTRPCLQYQIERCTGPCVGLVGAETYGEDV 211 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYNRM 242 FL G L +++A+ M QA + ++E A +RD+++ L + + Sbjct: 212 TNTLLFLEGRGEALIDRLAQRMEQAAQRLEFEKAARYRDQISNLRTVLAKQLVAGEQGDL 271 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D + N+AC+ F GQ G +FF + E A +L F+ QFY DK P Sbjct: 272 DMIACAIKGNIACVHVVFVRNGQQIGDRSFFPRMQDEHDAAAVLGAFIPQFYLDKEIPRE 331 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 +LLS E E L E +Q G VKI+ +GE+ K +E A NA + T +L+++ + Sbjct: 332 LLLSHEIRELELFESVLGQQAGRPVKISWRLRGERAKRLELARANAECALTTRLASQQTI 391 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 L+ T+ L PKR+E +D SH G V VV G +K+ YR+FN+ + Sbjct: 392 ADRLRHLTEMLGLAEPPKRMECFDISHTQGDQTVASCVVFDRTGPLKSAYRRFNIEG--I 449 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD A M L RR+ ++ E PD++ +DGGKGQ+ AA Sbjct: 450 TGGDDYAAMAQALSRRYQRIRAGE--------------VEAPDILFIDGGKGQIHAAART 495 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 L +L VEN I II IAKGP R GME F + +V+ +P IQ +RDEAHRFA Sbjct: 496 LAELGVEN-IRIIGIAKGPDRKPGMETLFQTGCSDPIVVKPDNPGSLLIQHIRDEAHRFA 554 Query: 542 ITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 IT HR+RR K SPL I G+GP R++ LL+ FG ++ ISR+ E L+S+EGI++++A Sbjct: 555 ITGHRQRRAKTVTRSPLQAIAGLGPKRRQRLLRQFGGLRQISRADVEALSSVEGINRQLA 614 Query: 601 CKIYNHFHKNTS 612 +IY+ FH + + Sbjct: 615 QRIYDLFHDHGA 626 >gi|226941543|ref|YP_002796617.1| excinuclease ABC subunit C [Laribacter hongkongensis HLHK9] gi|226716470|gb|ACO75608.1| UvrABC system protein C [Laribacter hongkongensis HLHK9] Length = 606 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 226/610 (37%), Positives = 333/610 (54%), Gaps = 27/610 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+MLD G+VLYVGKA +L++R+ Y ++ + RI M+ QI I TV Sbjct: 18 SLPALPGVYRMLDTEGQVLYVGKAVDLKRRVSQYFQKSDLSPRIELMVRQIAAIETTVVR 77 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EAL+LE N+IK L P++NIL RDDKS+PY++++ +H P L +R + Q YFGP Sbjct: 78 SEAEALVLENNLIKSLAPKYNILFRDDKSYPYLMLS-RHAYPQLAYYRGALDHQHQYFGP 136 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + + AV + I LQR F LR+C DSVF +R+RPCLL+QIKRCS PC G + + Y V Sbjct: 137 YPNGYAVREAIAILQRVFRLRTCEDSVFANRSRPCLLYQIKRCSAPCVGLVGEKDYAADV 196 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---- 240 A +FLSG H L E + R+M A+ ++E A RD++ AL+ +Q + Sbjct: 197 RRAAEFLSGRQHALTEDMTRDMLAASEALEFEKAAELRDQIQALARVQERQFVMSTSSDI 256 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D + L C+ G G FF + ++ +L FL Q Y+ +P P Sbjct: 257 DCDVVGIAREGGLVCVNLVMIRGGSQLGDKRFFPDNADDLDDSGVLEAFLLQHYSHQPAP 316 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +S ++ + +V + GE+R +E A NA S QKL++ Sbjct: 317 GTVYVSTAVNP--VMGEALSAIAERRVSVISHTLGERRIWVEMAEKNARLSIQQKLASRS 374 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 + +M + + + R+E +D SH MG + V VV ++YR FN+ + Sbjct: 375 TQEMRIAALAEALGYDQVE-RLECFDISHTMGEATVASCVVYDHGQMRPSEYRHFNI--S 431 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 + DD A MR L RR+ +L E L PD++++DGGKGQ+ A Sbjct: 432 GITPGDDYAAMREALTRRYQKLAAGEGKL--------------PDILLIDGGKGQVGVAV 477 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYFIQRLRDEAHR 539 VL +L + N + I+ +AKG R G+E V++ + L L P L+ IQ +RDEAHR Sbjct: 478 EVLAELGL-NELPIVGVAKGEARKPGLETLVLVREQKTLQLPADHPALHLIQTVRDEAHR 536 Query: 540 FAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAIT HR RR KA S L+EI G+GP R++ LL FG +K ++ +S E +A +EGI++ Sbjct: 537 FAITGHRARRAKARTTSTLEEIPGVGPKRRQRLLTRFGGLKGLAAASVEDIALVEGINRV 596 Query: 599 IACKIYNHFH 608 +A KIY H Sbjct: 597 LAEKIYAALH 606 >gi|78485489|ref|YP_391414.1| excinuclease ABC, C subunit [Thiomicrospira crunogena XCL-2] gi|119367857|sp|Q31GI3|UVRC_THICR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|78363775|gb|ABB41740.1| Excinuclease ABC subunit C [Thiomicrospira crunogena XCL-2] Length = 613 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 225/615 (36%), Positives = 339/615 (55%), Gaps = 24/615 (3%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + E PGVY M D +G+++YVGKA NL++R+ SY + + ++SQ+ +I TV Sbjct: 15 LKHLTERPGVYLMYDASGQIIYVGKAKNLKRRVSSYFKKRHEEIKTETLVSQVASIEVTV 74 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EAL+LE +IKR KPR+NIL RDDKS+PYI ++ K P+L HR + G YF Sbjct: 75 TDTESEALILENTLIKRHKPRYNILFRDDKSYPYIFVSTGKKFPSLSYHRGAKRKVGRYF 134 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+++LQ+ F +R C +SVF HR+RPCL +QIKRCSGPC ++ +Y Sbjct: 135 GPFPNASAVHQTLHALQKIFPVRQCTESVFNHRSRPCLQYQIKRCSGPCVEGLVTEAEYN 194 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E V FL G + ++ E + M QA+ + ++E A ++RD+++AL IQ+ + Sbjct: 195 EDVQHTIAFLEGKSFDVIESLGHKMQQASDEFEFEKAALYRDKISALRAIQSQHLINQPG 254 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSES-TNAQILSYFLRQFYTDK 297 D +L N C+ + G G+ +F K +S +I+S F+ Q Y D Sbjct: 255 SKDTDVVALAEEANQVCVSIMMYRGGNLWGSQNYFPKIGGQSINPGEIISAFITQHYIDL 314 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P P+ IL+S+ E+ S LE +Q KV I + +++ AL NA Q+L+ Sbjct: 315 PIPQMILVSDVLEDKSSLETWLSEQKKAKVSIRKAVSQTHKGLMKLALTNAQSGLKQQLT 374 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + S +K AL P +E +D SH G V VV E + YRKFN+ Sbjct: 375 QKASQAERVKSLQDVLALASPPNHMECFDISHTQGNQTVASCVVFNEGVPNTSAYRKFNI 434 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 ++ DD A M + RR+S++ K PD++++DGGKGQL+ Sbjct: 435 EG--IQPGDDYAAMHQAITRRYSRVKKEG--------------LPLPDLIVIDGGKGQLN 478 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRLRDE 536 A V K L ++N + ++S+AKG R AG+E + E + L D L+ + +RDE Sbjct: 479 KAIDVFKTLELDN-LPLVSVAKGEGRKAGLEILYTPFNEEGIDLEADDIALHLLNYIRDE 537 Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 AHRFAIT+HR RR+KA +S L++I G+G + LL FG + + ++ L + GI Sbjct: 538 AHRFAITSHRSRRQKAQTHSRLEDIPGVGAKTRHKLLTHFGGLTEVKNAAVSELQKVPGI 597 Query: 596 SKKIACKIYNHFHKN 610 S +IA IY+ FH Sbjct: 598 SARIAQTIYDFFHGE 612 >gi|83858529|ref|ZP_00952051.1| excinuclease ABC subunit C [Oceanicaulis alexandrii HTCC2633] gi|83853352|gb|EAP91204.1| excinuclease ABC subunit C [Oceanicaulis alexandrii HTCC2633] Length = 636 Score = 550 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 268/610 (43%), Positives = 381/610 (62%), Gaps = 16/610 (2%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + + + PGVY+M G VLYVGKA L+ R+ +Y S HT+RI MIS ++ F +T Sbjct: 39 KNLSQGPGVYRMYGEDGEVLYVGKAKKLKNRVSNYAKSGGHTNRIALMISLTRSMEFVLT 98 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRLKPRFNILLRDDKSFPYILI H+ L KHR + +G YFG Sbjct: 99 RTETEALLLEANLIKRLKPRFNILLRDDKSFPYILIRRDHESAQLTKHRGARKAKGDYFG 158 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV T+N+LQ+ F +R+C DSV+ RTRPC+L+QIKRC+GPC +S Y E Sbjct: 159 PFASPSAVNNTLNTLQKAFGIRTCTDSVYEGRTRPCMLYQIKRCAGPCVDLVSPSDYDEL 218 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--- 240 V EAK FLSG +++L++++ M A+ D+E+A RDR+ A++ + + D + Sbjct: 219 VREAKDFLSGRSNSLRQRLQDEMTAASENLDFETAAKLRDRIRAIAAVTSQQDVNPDGVE 278 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D +L+ C+Q FF GQN G + K + ++ ++LS F+ QFY DKP P Sbjct: 279 DADVIALHQEGGKTCVQIFFFRAGQNWGNRALYPKHEQDAAPDEVLSAFIAQFYDDKPAP 338 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 IL S + ++ LL + + G+ V+I PK+G K+ ++E A NA + + L+ Sbjct: 339 RLILTSSDPQQAELLAEALTLRAGHPVEIRTPKRGSKKALVEAAERNAKEALGRNLAESR 398 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L + F L P+RIE+YDNSHI G +A+G M+V G GF K YR+FN+ + Sbjct: 399 SQAQLLDGVARVFGLEERPERIEVYDNSHIQGTNALGAMIVAGPEGFEKQSYRRFNMKGD 458 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 D T DD AMM+ ++ RRF++L K E PD++++DGGKGQLS+ Sbjct: 459 DAATNDDFAMMQAMIRRRFTRLQKEREE-----------GAPVPDLILIDGGKGQLSSVM 507 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 V+++L V++ AKGP R AG E F++ + + M DP+LY++QR+RDEAHRF Sbjct: 508 EVMEELGVDDVAVAAV-AKGPDRDAGREVFYMPGKPPIRMPMNDPVLYYLQRIRDEAHRF 566 Query: 541 AITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AIT HR +R K +PLDEI+G+G RK LL+ FG+ K +SR++ L ++EG+S+ + Sbjct: 567 AITGHRAKRAKQMRENPLDEIDGVGATRKSALLKHFGSAKAVSRANLADLEAVEGVSRAL 626 Query: 600 ACKIYNHFHK 609 A KIY HFH+ Sbjct: 627 ARKIYEHFHE 636 >gi|329119770|ref|ZP_08248447.1| excinuclease ABC subunit C [Neisseria bacilliformis ATCC BAA-1200] gi|327464115|gb|EGF10423.1| excinuclease ABC subunit C [Neisseria bacilliformis ATCC BAA-1200] Length = 647 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 224/617 (36%), Positives = 332/617 (53%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PGVY+ D G VLYVGKA NL++R+ Y N+H+ RI M+ QI +I TV Sbjct: 47 LKNLPNLPGVYRFFDSGGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQIRHIETTV 106 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N IK L P++NIL RDDKS+PY++++ H P + +R + YF Sbjct: 107 TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHAFPQMAYYRGTLKKPNQYF 165 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + AV +I LQ+ F LR+C D+VF +R RPCLL+QIKRC+ PC G I Y + Sbjct: 166 GPYPNGTAVRDSIQILQKVFMLRTCEDNVFANRDRPCLLYQIKRCTAPCVGHIGEADYRD 225 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS----- 237 V A FL+G + + + R M QA ++E A RD++ AL +Q+ Sbjct: 226 SVRRAAAFLNGKTDGVIQDLQRKMQQAADNLEFEEAARCRDQIQALGIMQSSQFIDSKNP 285 Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 N +D +L + L C+ G++ G +FF ++ + F+ Q Y Sbjct: 286 YNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDLKNDPDPQGQEYAEAFVAQHY 345 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ I++S SL E + +G +++ GE++ + A NA + Q Sbjct: 346 LGKAKPD-IIISNFPIPESLREALESE-HGRQIQFVNKTIGERKVWLNMAEQNAMIAIGQ 403 Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 404 RRLQHTGQQQRISELAKILNMDADGLNRLECFDISHTQGEATIASCVVYDEQNIRPDQYR 463 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ K DD A MR VL RR+ ++ + E WPDVV++DGGK Sbjct: 464 RYNITTA--KPGDDYAAMREVLTRRYGKMQQAE---------AAGETVKWPDVVLIDGGK 512 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 GQ+ A V ++L + I ++ IAKGP+R AGME+ + GE L P L+ +Q Sbjct: 513 GQIGVAVAVWEELGLT--IPLVGIAKGPERKAGMEELILPFTGETFRLPPNSPALHLLQT 570 Query: 533 LRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFAIT HRK+R KA S L +I G+G R++ LL FG ++ ++ +S E LA Sbjct: 571 VRDESHRFAITGHRKKRDKARITSSLSDIPGVGGKRRQALLTRFGGLRGVTAASKEDLAQ 630 Query: 592 IEGISKKIACKIYNHFH 608 +EGISK +A KIY H H Sbjct: 631 VEGISKALAEKIYEHLH 647 >gi|296134219|ref|YP_003641466.1| excinuclease ABC, C subunit [Thermincola sp. JR] gi|296032797|gb|ADG83565.1| excinuclease ABC, C subunit [Thermincola potens JR] Length = 619 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 204/618 (33%), Positives = 330/618 (53%), Gaps = 21/618 (3%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVTC 64 +P+ PGVY M + G ++YVGKA +L+ R++SY S+ H+ ++ M++Q+ + + +T Sbjct: 10 LPDKPGVYLMKNADGDIIYVGKAVSLKSRVRSYFQSSRAHSPKVRSMVAQVEDFEYILTD 69 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E+EAL+LE N+IK+ +PR+N+ L+DDKS+PY+ +T + P L+ R Y+GP Sbjct: 70 SEIEALILECNLIKKHRPRYNVRLKDDKSYPYLKLTVDEEFPRLFMTRRVVRDGARYYGP 129 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + + AV +T+ L++ F LRSC RPCL + IK+C GPC +IS + Y + V Sbjct: 130 YTNAGAVHETLRVLKQVFPLRSCKKKNVDRNARPCLNYHIKKCLGPCNNQISVKDYRDMV 189 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNR 241 +E FL G L ++I M +A + ++E A ++RD+ AL I Sbjct: 190 NEIVLFLEGRQEELIKQIEAKMTKAAEQMEFERAALYRDQAKALRAIVEKQKVVVADLTD 249 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-CP 300 D L C F G+ G + L+ + A+IL F++Q+Y P Sbjct: 250 QDFIGLAREGEDCCASVFFVRSGKLLGREHYILEGVGDDPPAEILGDFIKQYYLQVEYVP 309 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + IL S E SL+E ++ G KV++ VP++G+K K++E NA + Sbjct: 310 KEILCSVRPAEISLIEKWLTERRGNKVQVKVPQRGDKAKLVELVEKNAREELARHRLEME 369 Query: 361 SHQMI----LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + L + LP +P+RIE YD S+ G +VG MVV + ++YR+F Sbjct: 370 KSRARTEGALLGLEEYLDLPRVPRRIECYDISNTQGRESVGSMVVFQDGEPKNSEYRRFK 429 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP-KKQEYSFPSWPDVVILDGGKGQ 475 + V+ +D A M+ V+ RRF + + E + + + F PD+VI+DGGKGQ Sbjct: 430 IKT--VEGPNDFASMQEVIGRRFGKAREEFEAIEEGMLEPAKAKFAKIPDLVIIDGGKGQ 487 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLR 534 L+AA+ V+ L I +AK E F + + +VL LY +QR+R Sbjct: 488 LNAAREVMINLG-YGFIPTFGLAKEE------ELLFAEDRTDPIVLPRNSESLYLLQRIR 540 Query: 535 DEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DEAHRFAIT HR R K + S LD+I GIG R++ ++Q F + + + ++S +A +E Sbjct: 541 DEAHRFAITYHRHLRGKHSLKSILDDIPGIGVKRRKAIIQHFRSFEKLLKASAAEIAEVE 600 Query: 594 GISKKIACKIYNHFHKNT 611 GIS+ +A +++ + H + Sbjct: 601 GISEALAEQVWEYLHHHD 618 >gi|254293456|ref|YP_003059479.1| excinuclease ABC subunit C [Hirschia baltica ATCC 49814] gi|254041987|gb|ACT58782.1| excinuclease ABC, C subunit [Hirschia baltica ATCC 49814] Length = 655 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 264/612 (43%), Positives = 367/612 (59%), Gaps = 12/612 (1%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P GVY+M I G +LYVGKA +L+ R+ +Y HT RI MIS ++ F V Sbjct: 51 LKHLPSKSGVYRMYGIDGDLLYVGKAKSLKNRVANYAKLGGHTQRIARMISLTRSMEFVV 110 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EALLLEA++IK+LKPRFNILLRDDKSFPYILI H P + KHR + +G YF Sbjct: 111 TESETEALLLEASLIKKLKPRFNILLRDDKSFPYILIRRDHDAPQILKHRGAKKTKGEYF 170 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPFAS AV +T++ LQ+ F LR+C+DSV+ R+R C+ QIKRCS PC IS + Y + Sbjct: 171 GPFASGYAVNETLDILQKAFLLRTCSDSVYEGRSRACMQHQIKRCSAPCVDIISKKDYND 230 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IY 239 +A +FL+G + L+E +A+ M A+ ++E A I RDR+ AL+ ++ Sbjct: 231 LADQAAQFLNGKVNTLQEDMAKEMEAASQDMEFEKAAILRDRIRALAAVRASQSINPANL 290 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 N D F + C+Q FF GQN G ++ + D + T +IL+ FL QFY ++P Sbjct: 291 NEADIFGIETKAGQTCVQAFFFRAGQNWGATAYYPRHDVDDTPEEILAAFLVQFYDNRPV 350 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P IL S E ++ + + + YKV I P +GEK ++QA NA + +KL+ Sbjct: 351 PRLILTSVELDQAKFIAEALELRTDYKVYIHKPSRGEKLGFVKQAHTNAREALARKLAQT 410 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 S IL K F L PKRIE+YDNSHI G +AVG M+V GF K+ YRKFN+ Sbjct: 411 QSQGKILSAVQKVFDLDEPPKRIEVYDNSHIQGSNAVGGMIVANSEGFDKSSYRKFNIKD 470 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 +++ DD MMR V+ RRF++L K P +WPD+V++DGG GQLSA Sbjct: 471 TEIEPGDDYGMMREVMRRRFARLKKEAAGRETKPD-------TWPDLVLIDGGLGQLSAV 523 Query: 480 QGVLKKLNV-ENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 + ++ N + +I+IAKGP R+AG E+FF L + DP LY++QRLRDEAH Sbjct: 524 IEAIGEVGFGPNDLNLIAIAKGPDRNAGREQFFRPNRAPFQLPINDPALYYLQRLRDEAH 583 Query: 539 RFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 R+AI HR +R +PLDEI GIGP RK+ LL FG+ K +S + + L ++G+S Sbjct: 584 RWAIGAHRAKRSADIVKNPLDEIGGIGPSRKKALLHHFGSAKGVSNAKLKDLEGVDGVSA 643 Query: 598 KIACKIYNHFHK 609 +A KIY++F Sbjct: 644 ALAQKIYDYFQN 655 >gi|254428531|ref|ZP_05042238.1| excinuclease ABC, C subunit [Alcanivorax sp. DG881] gi|196194700|gb|EDX89659.1| excinuclease ABC, C subunit [Alcanivorax sp. DG881] Length = 610 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 221/609 (36%), Positives = 334/609 (54%), Gaps = 23/609 (3%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 PGVY+MLD G VLYVGKA NLQ R+ SY N + + ++ +I +I+ TVT +E Sbjct: 18 RKPGVYRMLDGDGGVLYVGKARNLQARLNSYFQKNVSSAKTRALVGRIRDIQTTVTGSEA 77 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EALLLE ++IK LKP +NILLRDDKS+PYI IT + P + HR + YFGP+ S Sbjct: 78 EALLLEQSLIKELKPPYNILLRDDKSYPYIRITSADRFPRVTFHRGTRRAGSQYFGPYPS 137 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 AV + ++ +++ F +R+C+DS FR+RTRPCL QI RC+ PC G +S Y V A Sbjct: 138 GGAVREALSLIEKVFRVRNCSDSYFRNRTRPCLQHQINRCTAPCVGLVSEADYARQVKMA 197 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--DCF 245 FL G + + E+++ +M A++ ++E A I RD+LAA+ +Q + + D Sbjct: 198 ADFLDGRSREVVEQLSADMEAASVALEFEKAAILRDQLAAIQSVQQKQYAETGQGDLDVV 257 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPE 301 ++ LA I+ G+ G TF T E ++IL FL Q+Y D P+ Sbjct: 258 AIETRHGLAVIEVLMIRDGRILGHRTFRPDTRGEEDRSEILEAFLSQYYLGDREDPVKPQ 317 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 ILLS E L+ + Q+G KV++ + ++ I A NA +S +L+ Sbjct: 318 EILLSMEIPGADALQQALESQWGKKVRLAWRVRSDRAAWITMAQTNAQQSMAAELAAREH 377 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 + +RIE +D SH G AV VV + G K +YR FN++P Sbjct: 378 MEARFLALETLLESSEPVRRIECFDISHTQGEKAVASCVVFDQQGARKQEYRHFNVNPA- 436 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 DD + + RR+ +++K + PD++++DGGKGQ+ Sbjct: 437 -AGGDDYEALEEAIRRRYQRVLKEQ--------------GRLPDLLLIDGGKGQMQRGWK 481 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 V+++L+++ R+ ++ I KGP R G E ++ G+ +V D L+ +Q++RDEAHRFA Sbjct: 482 VIQELDLQARVRVMGIGKGPSRRPGFEALYLPCGKEMVPGPADSALHLLQQVRDEAHRFA 541 Query: 542 ITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 +T HR RR KA S LDEI GIGP R++ LL FG +K + +S LA + GI+ ++A Sbjct: 542 LTGHRARRGKARKQSTLDEIPGIGPKRRKALLTHFGGLKQMRNASASELARVPGINAQMA 601 Query: 601 CKIYNHFHK 609 +Y+ FH+ Sbjct: 602 QTLYDWFHQ 610 >gi|325198477|gb|ADY93933.1| excinuclease ABC, C subunit [Neisseria meningitidis G2136] Length = 628 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 224/617 (36%), Positives = 338/617 (54%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P+ PGVY+ D G+VLYVGKA NL++R+ Y N+H+ RI M+ Q+++I T+ Sbjct: 28 LKNLPKLPGVYRFFDEGGKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 87 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N+IK L P++NIL RDDKS+PY++++ H+ P + +R + YF Sbjct: 88 TRSEAEALILENNLIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 146 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +AV +I LQ+ F LR+C DSVF HR RPCLL+QIKRCS PC G IS E Y + Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCSAPCVGHISEEDYHD 206 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236 V EA FL+G L + M A +E A +RD+ + + I + N Sbjct: 207 SVREASTFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 266 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 + N +D +L + L C+ G++ G +FF T ++ F+ Q Y Sbjct: 267 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ ++ L+ + ++G +++ GE++ ++ A NA + Q Sbjct: 327 LGKSKPD--IIISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 384 Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + S Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 385 RCLQQSSQQHRIDELAKILNMNSDDLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ K DD A MR VL RR+ ++ + E N WPDVV++DGGK Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPDVVLIDGGK 493 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 GQ+ A V ++L + I ++ IAKGP+R AGME+ + GE L P L+ +Q Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQT 551 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFAIT HRK+R KA S L +I G+G R++ LL FG ++ + +S E L Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLSDIPGVGSKRRQALLTRFGGLRGVIAASREDLEQ 611 Query: 592 IEGISKKIACKIYNHFH 608 +EGISK +A IYNH H Sbjct: 612 VEGISKALAETIYNHLH 628 >gi|294675950|ref|YP_003576565.1| UvrABC system protein C [Rhodobacter capsulatus SB 1003] gi|294474770|gb|ADE84158.1| UvrABC system protein C [Rhodobacter capsulatus SB 1003] Length = 631 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 266/604 (44%), Positives = 372/604 (61%), Gaps = 14/604 (2%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+ML+ A VLYVGKA NL+ R+ +Y + H+ RI MIS+ ++ F T TE E Sbjct: 35 SPGVYRMLNAAQEVLYVGKARNLKARVSNYARTTGHSGRIARMISETTHMMFLTTRTETE 94 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE N+IK+LKPR+N+LLRDDKSFPYILI H P + KHR + T++G+YFGPFAS Sbjct: 95 ALLLEQNLIKQLKPRYNVLLRDDKSFPYILIAGDHPFPMIRKHRGARTVKGAYFGPFASA 154 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 AV +T+N L+R F LR+C+D++F RTR CL +QIKRCSGPC G+IS + Y V +A+ Sbjct: 155 SAVNRTLNHLERAFQLRNCSDAMFSSRTRACLQYQIKRCSGPCVGKISEDDYRRTVADAQ 214 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCF 245 +FL G + ++++ +A M+ A+ +YE A RDR+ AL+ +Q D Sbjct: 215 RFLEGKSSSIQQDLAAEMSAASEAMEYERAAALRDRIGALTTVQQSQGINPRSVAEADVV 274 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILL 305 +++ AC+Q F Q+ G F+ +T + + A++L FL QFY K P+ ILL Sbjct: 275 AVHLEGGQACVQVFFIRAHQSWGNHDFYPRTGAGAEEAEVLEAFLAQFYDAKEPPKTILL 334 Query: 306 SEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365 S E E+ L+ + G KV++ VPK+GEK +++E AL NA S +K+S + + Sbjct: 335 SHEIEDADLMIDLLSTRAGRKVELAVPKRGEKAELVENALRNARESLGRKMSESAAQAKL 394 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 L F LP P RIE+YDNSHI G AVG M+V G G +K+ YRKFN+ D+ Sbjct: 395 LLGVAAAFGLPKPPDRIEVYDNSHIQGAHAVGGMIVAGPEGLMKSSYRKFNIKGEDLTPG 454 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD MM+ VL RRF +L++ + E WPD++++DGG GQ+SA ++ Sbjct: 455 DDFGMMKEVLTRRFERLLRED---------PERKTDLWPDLLLIDGGAGQVSAVHEIMVA 505 Query: 486 LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545 L V + I ++ +AKG R G E+F + L +DP+LY+IQRLRDEAHR+AI H Sbjct: 506 LGVAD-IAMVGVAKGIDRDLGKEEFHRIGHRPMALPRQDPVLYYIQRLRDEAHRWAIGAH 564 Query: 546 RKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 R +R KA +PLDEI GIG RKR LL FG+ K +SR+ L + GIS +A I+ Sbjct: 565 RAKRAKATMANPLDEIPGIGATRKRALLAHFGSAKAVSRAGESDLMEVPGISAAMAETIW 624 Query: 605 NHFH 608 N F+ Sbjct: 625 NFFN 628 >gi|302878760|ref|YP_003847324.1| excinuclease ABC, C subunit [Gallionella capsiferriformans ES-2] gi|302581549|gb|ADL55560.1| excinuclease ABC, C subunit [Gallionella capsiferriformans ES-2] Length = 601 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 227/609 (37%), Positives = 330/609 (54%), Gaps = 26/609 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+ D G +LYVGKA L+KR+ SY N + RI M+S I I TVT Sbjct: 14 SLPLLPGVYRYYDDKGALLYVGKAVQLKKRVSSYFQKTNVSPRIRLMVSHIARIETTVTR 73 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK LKPR+NIL RDDKS+PYI++T P L +R + Q YFGP Sbjct: 74 SEAEALLLENNLIKSLKPRYNILFRDDKSYPYIVLTGDE-FPRLTYYRGTPNKQHQYFGP 132 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + + A +TI LQR F +R+C DSV+ +RTRPCL QI RC+ PC IS+ Y + Sbjct: 133 YPNSYAARETIQLLQRIFRIRTCEDSVYNNRTRPCLQHQINRCTAPCVNLISALDYQADI 192 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY----N 240 H A L G + ++ + M+QA + YE A + RD+L AL +Q Sbjct: 193 HRAVLLLQGKHQEVERTLRDAMDQAAENQHYEQAAVLRDQLRALHTVQQKQFVESTGGTT 252 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D +L + L C+ G++ G +FF + + +I+ F+ Q Y D P Sbjct: 253 DADIIALAQSGGLVCLNLAMVRGGRHLGDKSFFPEHAEGLASDEIVVAFIAQHYLDLAVP 312 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 +LL+ + + +L +Q G+ VKI+ GE+R+ +E A NA + Q++ + Sbjct: 313 PILLLASDCTDKTL-AQLLSEQAGHAVKISTATTGERRQWLEMAQRNAELALGQRVMQQG 371 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 Q L + +P +RIE +D SHIMG + V VV +QYR++N+ + Sbjct: 372 GQQQRLDRLREWLEMP-TVQRIECFDISHIMGEATVASCVVYENLDMRSSQYRRYNI--S 428 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 + DD A MR L RR+ ++ E + PD+V++DGG GQL A Sbjct: 429 GITPGDDYAAMRQALTRRYQKIRTGE--------------GARPDLVLIDGGLGQLHVAM 474 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 V+ +L ++ + ++ +AKG +R GME+ G A L DP L+ IQ++RDEAHRF Sbjct: 475 EVMAELALD--LALVGVAKGVERKPGMEQLIFPDGTARQLPADDPALHLIQQIRDEAHRF 532 Query: 541 AITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 A+ HR RR K S L+EI G+G R+R LL FG ++ ++++S E L +EGISK + Sbjct: 533 AVAGHRARRGKTRTASSLEEIAGVGDKRRRSLLTHFGGLREVAQASVEQLCQVEGISKSL 592 Query: 600 ACKIYNHFH 608 A IY H Sbjct: 593 AQVIYQRLH 601 >gi|226944590|ref|YP_002799663.1| excinuclease ABC subunit C [Azotobacter vinelandii DJ] gi|259710334|sp|C1DIK7|UVRC_AZOVD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|226719517|gb|ACO78688.1| excinuclease ABC, C subunit [Azotobacter vinelandii DJ] Length = 607 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 216/608 (35%), Positives = 333/608 (54%), Gaps = 25/608 (4%) Query: 10 PGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEA 69 PGVY+MLD G +LYVGKA NL+KR+ SY ++ + ++++I + T+T E EA Sbjct: 18 PGVYRMLDAKGELLYVGKAKNLRKRLSSYFRTSGLAPKTAALVARIAQVETTITANETEA 77 Query: 70 LLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVD 129 LLLE +IK +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S Sbjct: 78 LLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDG-AFPRLGIHRGAKQRKGRYFGPYPSAG 136 Query: 130 AVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKK 189 ++ +++ LQ+ F +R C DS FR+RTRPCL QI+RC PC G + +Y E V + Sbjct: 137 SIRESLGLLQKAFQVRQCEDSYFRNRTRPCLQHQIRRCKAPCVGLVEPAEYAEDVRHSVM 196 Query: 190 FLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFSL 247 FL G ++ L E+++ M +A + D+E A RD++A L +Q+ +D + Sbjct: 197 FLEGRSNALAEELSAAMERAAVHLDFERAAELRDQIALLRRVQDQQSMEGGSGDVDVLAA 256 Query: 248 YHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP---CPENIL 304 AC+ G+ G+ FF + E +L+ FL Q+Y P P I+ Sbjct: 257 VVKPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVGDVLAAFLGQYYLANPERDLPGEII 316 Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364 ++ E+ L ++ +Q ++ I + + + + A+ NA ++ + +L+ Sbjct: 317 VNATHEDFPALVLALTEQRSRELHIRHRVRATRARWQQLAIANAEQALSARLAHRQHLAA 376 Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424 + + L P R+E +D SH G + V VV G G +K +YR++N+ V Sbjct: 377 RFEALAEALDLDAPPLRMECFDISHSSGEATVASCVVFGPEGALKGEYRRYNIEG--VTA 434 Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484 DD A M+ L RRF +L + E L PD++++DGGKGQL+ AQ VL+ Sbjct: 435 GDDYAAMQQALTRRFGKLREGEGKL--------------PDILLVDGGKGQLAIAQEVLR 480 Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAIT 543 +L V + I ++ +AKG R G+E ++ L P L+ IQ++RDEAHRFAIT Sbjct: 481 ELAVPDLI-LLGVAKGVTRKPGLETLYLNDAVHEFTLPADSPALHLIQQIRDEAHRFAIT 539 Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR RR KA S L+E+ G+GP R+R LL+ FG ++ +SR+S + +A GISKK+A Sbjct: 540 GHRARRGKARRTSSLEEVAGVGPKRRRELLKFFGGLQELSRASIDEIAKAPGISKKLADS 599 Query: 603 IYNHFHKN 610 IY H Sbjct: 600 IYAALHSE 607 >gi|326402663|ref|YP_004282744.1| UvrABC system protein C [Acidiphilium multivorum AIU301] gi|325049524|dbj|BAJ79862.1| UvrABC system protein C [Acidiphilium multivorum AIU301] Length = 634 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 263/611 (43%), Positives = 366/611 (59%), Gaps = 15/611 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 MP PGVY+MLD++G LYVGKA +L+KR+ +Y R+ M+S+ + + T Sbjct: 22 SMPAAPGVYRMLDLSGNALYVGKARSLKKRVTTYTQIARLPERLRRMVSETSTVEIITTH 81 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLEAN+IKRLKP++NILLRDDKS+P+++IT+ P L KHR + +G Y+GP Sbjct: 82 TEAEALLLEANLIKRLKPKYNILLRDDKSYPWLVITEDGDFPQLAKHRGAQVRKGRYWGP 141 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 FAS +V +TI +LQR F LR+C D+VF +RTRPCLLFQIKRCS PC G I +E Y V Sbjct: 142 FASAWSVNQTIQALQRVFLLRTCPDTVFANRTRPCLLFQIKRCSAPCVGRIDAEAYGALV 201 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241 +A FLSG ++ +A M A +YE A RDR+ L+HI+ + Sbjct: 202 RQASDFLSGRAGTVQHDLAAAMAAAADVMEYERAAAIRDRIRGLAHIRGGDVINPESVGD 261 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D +++ +C+Q F G+N G +FF +T +L F+ QFY DK P Sbjct: 262 ADVIAIHQAAGQSCLQVFFIRGGRNYGNRSFFPTQAQGATPGDVLGAFIAQFYDDKTPPP 321 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 ILLS + LL+ + + GYKV++ VP++GEKR ++E A NA + +KL+ Sbjct: 322 LILLSNTVPQADLLKDALGLKAGYKVELAVPQRGEKRHVVEHAATNAREALERKLAESAG 381 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 + +L F L P+RIE+YDNSHIMG +A G M+V G GF+K YR+F++ Sbjct: 382 QEKLLAATAALFGLEGNPERIEVYDNSHIMGTNAYGVMIVAGPEGFIKPAYRRFSIKGPI 441 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 DD AMMR VL RRF + + +WPD+V++DGG GQLSAA+ Sbjct: 442 TPG-DDFAMMREVLTRRFVRATAED---------PSREDGTWPDLVVIDGGAGQLSAARA 491 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 VL +L V + + +++IAKGP R AG E F + L RDP+LYF+QRLRDEAHR+A Sbjct: 492 VLDELGVSD-VPLVAIAKGPDRDAGREWFHLPDRSPFQLPPRDPVLYFLQRLRDEAHRYA 550 Query: 542 ITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 ITTHR R K S LD I GIG RK+ LL FG+ + + ++ + L ++ GI++ A Sbjct: 551 ITTHRASRSRKITTSELDGIPGIGSARKKALLNHFGSARGVRQAGLKDLEAVSGINRTTA 610 Query: 601 CKIYNHFHKNT 611 IY +F+ + Sbjct: 611 RLIYGYFNPDA 621 >gi|241761301|ref|ZP_04759389.1| excinuclease ABC, C subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374208|gb|EER63705.1| excinuclease ABC, C subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 664 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 264/617 (42%), Positives = 374/617 (60%), Gaps = 17/617 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PGVY+M D G +LYVGKA L+ R+ +Y + + RI M+SQ ++ Sbjct: 58 LKTLPLRPGVYRMYDSKGNILYVGKARALRNRVANYTQISGLSRRIQRMVSQTRSMTIVT 117 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPA---LYKHRDSSTIQG 119 T TE EALLLEA +IKR +P +NILLRDDKSFPYIL+ + P L +HR +G Sbjct: 118 TVTESEALLLEAQLIKRYRPPYNILLRDDKSFPYILLKEDGTFPQFPSLQRHRGVKRAKG 177 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 Y+GPFAS D+V T+NSLQ+ F LRSC+DS FR+R RPCLL+QIKRCS PC G IS + Sbjct: 178 KYYGPFASADSVTLTLNSLQKLFLLRSCSDSFFRNRKRPCLLYQIKRCSAPCVGRISEDD 237 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + + + FLSG + ++++K+ M QA+ +YE A ++RDRL AL+ IQ+H Sbjct: 238 YRDLAVDTRDFLSGKSTHVQKKLVTAMEQASNDLNYELAAVYRDRLKALAFIQSHQSINS 297 Query: 240 N---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 D F + LACIQ F QN G ++L E ++ FL QFY D Sbjct: 298 GNLRNADIFGIECRAGLACIQVFFIRNRQNWGHHAYYLNHIDEQPLEDVMQSFLGQFYED 357 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 K P++IL + + ++LE + Q Y+V+ P++G+ +K+++QA+ NA + ++L Sbjct: 358 KIAPKDILTNYLPSDKNVLEDALSSQRDYRVRFYQPQRGDLKKLVDQAVRNAKEAIDRRL 417 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + + + +LK+ F L IP RIE+YDNSHIMG + VG M+V G GF +N YRKFN Sbjct: 418 AEASTQKQLLKEMVNLFHLDKIPDRIEVYDNSHIMGSNMVGGMIVAGPEGFRRNSYRKFN 477 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + DD MMR VL RRFS+L ++S WPD++++DGGKGQ+ Sbjct: 478 IKSPSINPGDDFEMMREVLTRRFSRL---------ERSDPDHSSSEWPDLLLIDGGKGQV 528 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 A + +L K + + I I+ I+KGP R+AG E F + G L +L+++QRLRDE Sbjct: 529 HAVKDILAKQGISD-IAIVGISKGPDRNAGREHFHLVDGSEYALPPNSGLLFYLQRLRDE 587 Query: 537 AHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 AHRFAI THR +R K SPLDE+ GIGP RK+ LL FGT + + +S L + GI Sbjct: 588 AHRFAIGTHRAKRAKNLTSSPLDEVPGIGPSRKKALLLHFGTARDVKNASLSELEKVNGI 647 Query: 596 SKKIACKIYNHFHKNTS 612 S IA +IY+ FH++ + Sbjct: 648 SSAIARQIYDFFHRSPA 664 >gi|254419221|ref|ZP_05032945.1| excinuclease ABC, C subunit [Brevundimonas sp. BAL3] gi|196185398|gb|EDX80374.1| excinuclease ABC, C subunit [Brevundimonas sp. BAL3] Length = 621 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 275/613 (44%), Positives = 384/613 (62%), Gaps = 14/613 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + + P+ PGVY+M G LYVGKA +L+KRI Y HT RI M++Q ++ Sbjct: 19 EARRAPDKPGVYRMYGEDGSCLYVGKAKSLKKRIVQYAQGRFHTQRIGLMVAQTRSMELV 78 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT +E EALLLE+N IK+LKPRFN+LLRDDKSF ++I H+ P + KHR + T G Y Sbjct: 79 VTASETEALLLESNFIKKLKPRFNVLLRDDKSFAELMIRSDHRAPQVKKHRGAHTTPGHY 138 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPFAS AV +T+N+LQ+ F LRSC+DSV+ RTRPC+L QIKRCS PCTG IS E Y Sbjct: 139 FGPFASTWAVNRTLNTLQKAFLLRSCSDSVYETRTRPCMLHQIKRCSAPCTGLISLEDYG 198 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 E V EA++FL G + + ++++ M A+ D+E A RDR+ ALS I N + Sbjct: 199 ELVTEAEQFLRGKSRAVIGRLSQEMQAASDAMDFEQAARVRDRIRALSAISMENSVSADS 258 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F+L+ + AC+Q F+ GQN G +F + D T+ +IL+ FL QFY DKP Sbjct: 259 VAEGDVFALHSDGGQACVQVFFYRAGQNWGGRAYFPRVDKTDTDPEILAAFLGQFYEDKP 318 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P IL + E LLE +F + +++I P +GEK +++ AL NA + ++L+ Sbjct: 319 IPRLILSNVRPHELELLEEAFSMKADRRIEIVRPMRGEKLALVDHALTNAREALGRRLAE 378 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + IL + + F L P+RIEIYDN+HI G +AVG MVV G +GF K+QYRKFN+ Sbjct: 379 SSAQGKILDEVCEAFGLETRPERIEIYDNAHIQGTNAVGGMVVAGPDGFQKSQYRKFNIR 438 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 D+ DD MMR V+ RRF++L+K+EE + PD++++DGG GQL+ Sbjct: 439 GEDLTPGDDYGMMREVMRRRFARLVKDEEEGEDAVR---------PDLLLIDGGAGQLAE 489 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 VL L +++ I ++ +AKGP R AGMEKFF+ +L ++ P LY++QRLRDEAH Sbjct: 490 VLAVLADLGLDD-IAVVGVAKGPDRDAGMEKFFMPGKPPFMLPLKSPALYYLQRLRDEAH 548 Query: 539 RFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFA H KRR +PLDEI G+GP RK+ LL +FG+ K +SR+S L I+GI++ Sbjct: 549 RFANGAHAKRRSMDIKKNPLDEIEGVGPGRKKALLHAFGSAKGVSRASVADLLKIDGINQ 608 Query: 598 KIACKIYNHFHKN 610 +A +I+ F K+ Sbjct: 609 ALAERIHAFFRKS 621 >gi|260752833|ref|YP_003225726.1| excinuclease ABC subunit C [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552196|gb|ACV75142.1| excinuclease ABC, C subunit [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 664 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 263/613 (42%), Positives = 371/613 (60%), Gaps = 17/613 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PGVY+M D G +LYVGKA L+ R+ +Y + + RI M+SQ ++ Sbjct: 58 LKTLPLRPGVYRMYDSKGNILYVGKARALRNRVANYTQVSGLSRRIQRMVSQTRSMTIVT 117 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPA---LYKHRDSSTIQG 119 T TE EALLLEA +IKR +P +NILLRDDKSFPYIL+ + P L +HR +G Sbjct: 118 TVTESEALLLEAQLIKRYRPPYNILLRDDKSFPYILLKEDGIFPQFPSLQRHRGVKRAKG 177 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 Y+GPFAS D+V T+NSLQ+ F LRSC+DS FR+R RPCLL+QIKRCS PC G IS + Sbjct: 178 KYYGPFASADSVTLTLNSLQKLFLLRSCSDSFFRNRKRPCLLYQIKRCSAPCVGRISEDD 237 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + + + FL+G + ++++K+ M QA+ +YE A ++RDRL AL+ IQ+H Sbjct: 238 YRDLAVDTRDFLAGKSTHVQKKLVTAMEQASNDFNYELAAVYRDRLKALAFIQSHQSINS 297 Query: 240 N---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 D F + LACIQ F QN G ++L E ++ FL QFY D Sbjct: 298 GNLRNADIFGIECRAGLACIQVFFIRNRQNWGHHAYYLNHIDEQPLEDVMQSFLGQFYED 357 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 K P++IL + + ++LE + Q Y+VK P++G+ +K+++QA+ NA + ++L Sbjct: 358 KIAPKDILTNYPPSDKNVLEDALSSQRDYQVKFYQPQRGDLKKLVDQAVRNAKEAIDRRL 417 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + + + +LK+ F L IP RIE+YDNSHIMG + VG M+V G GF +N YRKFN Sbjct: 418 AEASTQKQLLKEMVNLFHLDKIPDRIEVYDNSHIMGSNMVGGMIVAGPEGFRRNSYRKFN 477 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + DD MMR VL RRFS+L ++S WPD++++DGGKGQ+ Sbjct: 478 IKSPSINPGDDFEMMREVLTRRFSRL---------ERSDPDHSSSEWPDLLLIDGGKGQV 528 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 A + +L + + + I I+ I+KGP R+AG E F + G L +L+++QRLRDE Sbjct: 529 HAVKDILAEQGISD-IAIVGISKGPDRNAGREHFHLVDGSEYALPPNSGLLFYLQRLRDE 587 Query: 537 AHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 AHRFAI THR +R K SPLDE+ GIGP RK+ LL FGT + + +S L + GI Sbjct: 588 AHRFAIGTHRAKRAKNLTSSPLDEVPGIGPSRKKALLLHFGTARDVKNASLSELEKVNGI 647 Query: 596 SKKIACKIYNHFH 608 S IA +IY+ FH Sbjct: 648 SSAIARQIYDFFH 660 >gi|225075863|ref|ZP_03719062.1| hypothetical protein NEIFLAOT_00886 [Neisseria flavescens NRL30031/H210] gi|224952809|gb|EEG34018.1| hypothetical protein NEIFLAOT_00886 [Neisseria flavescens NRL30031/H210] Length = 613 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 224/617 (36%), Positives = 336/617 (54%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PGVY+ D VLYVGKA NL++R+ SY N+H+ RI M+ Q+++I T+ Sbjct: 13 LKNLPNLPGVYRFFDEDNNVLYVGKAVNLKRRVSSYFQKNDHSPRIALMVKQVHHIETTI 72 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N IK L P++NIL RDDKS+PY++++ H+ P + +R + YF Sbjct: 73 TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 131 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +AV +I LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y + Sbjct: 132 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 191 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236 V EA FL+G L + M A +E A +RD+ + + I + N Sbjct: 192 SVREAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 251 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 + N +D +L + +L C+ G++ G +FF T ++ F+ Q Y Sbjct: 252 NNPNDIDLLALAVSDDLVCVHWVSIRGGRHVGDKSFFPDTKNDPDPNGQDYAEAFVAQHY 311 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ ++ L+ + ++G +++ GE++ ++ A NA + Q Sbjct: 312 LGKSKPD--IIISNFSVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 369 Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + S Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 370 RRLQQSSQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 429 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ K DD A MR VL RR+ ++++ E N WPDVV++DGGK Sbjct: 430 RYNITTA--KPGDDYAAMREVLTRRYGKMLEAEANGES---------VKWPDVVLIDGGK 478 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 GQ+ A V ++L + I ++ IAKGP+R AGME+ + GE L P L+ +Q Sbjct: 479 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQT 536 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFAIT HRK+R KA S L EI GIG R++ LL FG ++ + +S E L Sbjct: 537 VRDESHRFAITGHRKKRDKARVTSSLSEIPGIGSKRRQALLTRFGGLRGVIAASREDLEK 596 Query: 592 IEGISKKIACKIYNHFH 608 +EGISK +A IY H H Sbjct: 597 VEGISKALAETIYEHLH 613 >gi|148259437|ref|YP_001233564.1| excinuclease ABC subunit C [Acidiphilium cryptum JF-5] gi|146401118|gb|ABQ29645.1| Excinuclease ABC subunit C [Acidiphilium cryptum JF-5] Length = 620 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 263/611 (43%), Positives = 367/611 (60%), Gaps = 15/611 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 MP PGVY+MLD++G LYVGKA +L+KR+ +Y R+ M+S+ + + T Sbjct: 8 SMPAAPGVYRMLDLSGNALYVGKARSLKKRVTTYTQIARLPERLRRMVSETSTVEIITTH 67 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLEAN+IKRLKP++NILLRDDKS+P+++IT+ + P L KHR + +G Y+GP Sbjct: 68 TEAEALLLEANLIKRLKPKYNILLRDDKSYPWLVITEDGEFPQLAKHRGAQVRKGRYWGP 127 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 FAS +V +TI +LQR F LR+C D+VF +RTRPCLLFQIKRCS PC G I +E Y V Sbjct: 128 FASAWSVNQTIQALQRVFLLRTCPDTVFANRTRPCLLFQIKRCSAPCVGRIDAEAYGALV 187 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241 +A FLSG ++ +A M A +YE A RDR+ L+HI+ + Sbjct: 188 RQASDFLSGRAGTVQHDLAAAMAAAADVMEYERAAAIRDRIRGLAHIRGGDVINPESVGD 247 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D +++ +C+Q F G+N G +FF +T +L F+ QFY DK P Sbjct: 248 ADVIAIHQAAGQSCLQVFFIRGGRNYGNRSFFPTQAQGATPGDVLGAFIAQFYDDKTPPP 307 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 ILLS + LL+ + + GYKV++ VP++GEKR ++E A NA + +KL+ Sbjct: 308 LILLSNTVPQADLLKDALGLKAGYKVELAVPQRGEKRHVVEHAATNAREALERKLAESAG 367 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 + +L F L P+RIE+YDNSHIMG +A G M+V G GF+K YR+F++ Sbjct: 368 QEKLLAATAALFGLEGNPERIEVYDNSHIMGTNAYGVMIVAGPEGFIKPAYRRFSIKGPI 427 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 DD AMMR VL RRF + + +WPD+V++DGG GQLSAA+ Sbjct: 428 TPG-DDFAMMREVLTRRFVRATAED---------SSREDGTWPDLVVIDGGAGQLSAARA 477 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 VL +L V + + +++IAKGP R AG E F + L RDP+LYF+QRLRDEAHR+A Sbjct: 478 VLDELGVSD-VPLVAIAKGPDRDAGREWFHLPDRSPFQLPPRDPVLYFLQRLRDEAHRYA 536 Query: 542 ITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 ITTHR R K S LD I GIG RK+ LL FG+ + + ++ + L ++ GI++ A Sbjct: 537 ITTHRASRSRKITTSELDGIPGIGSARKKALLNHFGSARGVRQAGLKDLEAVSGINRTTA 596 Query: 601 CKIYNHFHKNT 611 IY +F+ + Sbjct: 597 RLIYGYFNPDA 607 >gi|254282877|ref|ZP_04957845.1| excinuclease ABC, C subunit [gamma proteobacterium NOR51-B] gi|219679080|gb|EED35429.1| excinuclease ABC, C subunit [gamma proteobacterium NOR51-B] Length = 608 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 216/612 (35%), Positives = 331/612 (54%), Gaps = 23/612 (3%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 +++ PGVYQM+D+ G++LYVGKA NL+ R+ SY ++ T + ++ +I++I+ TV Sbjct: 10 LKRLTTRPGVYQMMDVDGQLLYVGKAKNLKNRVTSYFRASGLTAKTMALVRRIHDIQVTV 69 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE++ALLLE N+IK+ KP FNILL+DDKS+PY+ ++ + + P L HR +G YF Sbjct: 70 TTTEIDALLLEHNLIKQHKPPFNILLKDDKSYPYVYLSSQDRWPRLSLHRGPKRRKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ S AV T++ LQ+ F +R C DS F +R+RPCL QI RC+ PC G +S + Y E Sbjct: 130 GPYPSAGAVRSTMHILQKVFKVRQCEDSYFSNRSRPCLQHQIGRCTAPCVGLVSDDAYAE 189 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYN 240 V + FL G + L ++A +M A + DYE A RD+LA L +Q + Sbjct: 190 QVKNSVLFLKGRSQELMVRLADDMEAAAAELDYERAADLRDQLAQLQQVQASQGIEGEHG 249 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KP 298 +D + AC+Q F + G+ +++ + +L F+ QFY + Sbjct: 250 DLDIIAASARGGHACVQVLFVREARVLGSRSYYPPIKLDEEEGAVLEAFIPQFYLSGRQT 309 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P +L+S E+ +L + Q +V I + + + ++ A+ A + T LS Sbjct: 310 IPREVLVSTPLEDAEILAEALSVQSERRVTIRHRVREARARWLQLAVQTAENNLTSHLSG 369 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + + + + L P R+E +D SH G + V VV NG K YR+FN+ Sbjct: 370 KQTMAGRFEALRLQLQLDEPPARMECFDISHSSGEATVASCVVFDANGANKADYRRFNI- 428 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + ++ DD A M L RR+ +++ E L PD++ +DGGKGQ+S Sbjct: 429 -DGIEPGDDYAAMHQALSRRYRRIVSGEGKL--------------PDILFIDGGKGQVSQ 473 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEA 537 A VL +L + + +I +AKG R AG E E VL +P L+ IQ++RDE+ Sbjct: 474 AMSVLSELEITT-VRVIGVAKGTTRKAGFETLIDGDTERETVLRGDNPALHLIQQIRDES 532 Query: 538 HRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR RR KA S L+ I G+G R+R LL+ FG+ K + +S L + GI+ Sbjct: 533 HRFAITGHRARRGKARNTSTLESIPGVGSKRRRELLRHFGSAKGVENASITELRKVSGIN 592 Query: 597 KKIACKIYNHFH 608 +A IY+ H Sbjct: 593 ANLAQTIYDTLH 604 >gi|319410592|emb|CBY90961.1| UvrABC system protein C (UvrC protein; excinuclease ABC subunit C) [Neisseria meningitidis WUE 2594] Length = 628 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 218/617 (35%), Positives = 336/617 (54%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P+ PGVY+ D G+VLYVGKA NL++R+ Y N+H+ RI M+ Q+++I T+ Sbjct: 28 LKNLPKLPGVYRFFDEGGKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 87 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N+IK L P++NIL RDDKS+PY++++ H+ P + +R + YF Sbjct: 88 TRSEAEALILENNLIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 146 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +AV +I LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y + Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 206 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236 V +A FL+G L + M A +E A +RD+ + + I + N Sbjct: 207 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 266 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 + N +D +L + + C+ G++ G +FF T ++ F+ Q Y Sbjct: 267 NNPNDIDLLALAVSDGIVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ ++ L+ + ++G +++ GE++ ++ A NA + Q Sbjct: 327 LGKSKPD--IIINNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 384 Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + + Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 385 RRLQQSNQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ K DD A MR VL RR+ ++ + E N WPD V++DGGK Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPDAVLIDGGK 493 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 GQ+ A V ++L + I ++ IAKGP+R AGME+ + GE L P L+ +Q Sbjct: 494 GQIGIAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQT 551 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFAIT HRK+R KA S L +I G+G R++ LL FG ++ + +S E L Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLSDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 611 Query: 592 IEGISKKIACKIYNHFH 608 +EGISK +A IY H H Sbjct: 612 VEGISKALAETIYEHLH 628 >gi|182678685|ref|YP_001832831.1| excinuclease ABC, C subunit [Beijerinckia indica subsp. indica ATCC 9039] gi|182634568|gb|ACB95342.1| excinuclease ABC, C subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 692 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 291/618 (47%), Positives = 398/618 (64%), Gaps = 13/618 (2%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + P PGVY+M+ +G VLYVGKA +++KRI +Y+ HT+RI MIS ++ F T Sbjct: 73 QHAPHGPGVYRMIGESGEVLYVGKAKSVRKRIANYLREGGHTNRIARMISLTASMVFVST 132 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLE N IK++KPRFN+L+RDDKSFPYIL++ H+ P L KHR + + +G YFG Sbjct: 133 ATETEALLLETNYIKQMKPRFNVLMRDDKSFPYILLSRDHEAPQLTKHRGARSRKGDYFG 192 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFASV AV +T+N+LQR F LRSC DS + +RTRPCLL+QIKRCS PCTGEIS Y Sbjct: 193 PFASVWAVNRTLNALQRAFLLRSCTDSYYENRTRPCLLYQIKRCSAPCTGEISLHDYDHL 252 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 EA+ FLSG + ++E +AR M QA +E A RDR++ALS IQ Sbjct: 253 ASEARDFLSGKSRAVRELLAREMEQAAENLAFEQAARLRDRISALSTIQGAQGINPKTVE 312 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F++ C++ FF QN G +F + D + +++L FL QFY+DKP Sbjct: 313 EADVFAIVEEAGHFCVEVFFFRASQNWGNRAYFPRADKSLSLSEVLDAFLAQFYSDKPAA 372 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 +LLSEE E +L + ++ G+KV+I VP++GEK+ ++E A N + +++LS + Sbjct: 373 RLLLLSEEIENADVLAQALSERSGHKVEIAVPQRGEKKDLVEAARQNGRETLSRQLSEQA 432 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S + +L + K F L + +R+E+YDNSHIMG +AVG M+V G +GF+K YR FN+ Sbjct: 433 SQEKLLAELAKAFGLERVLRRVEVYDNSHIMGTNAVGAMIVAGPSGFMKTHYRTFNIKGE 492 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNE--------ENLNFHPKKQEYSFPSWPDVVILDGG 472 ++ DD MMR VL RRFS+L++ + E+ P ++ +FP WPD++++DGG Sbjct: 493 ELTPGDDYGMMREVLRRRFSRLLREDPIAPSPEAESEEAPPSEKNEAFPQWPDLILIDGG 552 Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532 +GQ AA+ +L +L ++N + + SIAKG R AG E FFV L RDP LYF+QR Sbjct: 553 QGQFDAARAILDELGIDN-VALASIAKGVDRDAGRETFFVTGRPPFRLPPRDPALYFVQR 611 Query: 533 LRDEAHRFAITTHR-KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 LRDEAHRFAI THR KRRK+ SPLDEI GIGP RKR LL +FGT K ISR++ L Sbjct: 612 LRDEAHRFAIGTHRAKRRKEFTKSPLDEIAGIGPARKRALLNAFGTAKAISRAALPDLEK 671 Query: 592 IEGISKKIACKIYNHFHK 609 + GI+ A IY+ FH+ Sbjct: 672 VPGINAASAKLIYDFFHE 689 >gi|241760546|ref|ZP_04758639.1| excinuclease ABC subunit C [Neisseria flavescens SK114] gi|241319050|gb|EER55552.1| excinuclease ABC subunit C [Neisseria flavescens SK114] Length = 613 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 224/617 (36%), Positives = 334/617 (54%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PGVY+ D VLYVGKA NL++R+ SY N+H+ RI M+ Q+++I T+ Sbjct: 13 LKNLPNLPGVYRFFDKDNNVLYVGKAVNLKRRVSSYFQKNDHSPRIALMVKQVHHIETTI 72 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N IK L P++NIL RDDKS+PY++++ H+ P + +R + YF Sbjct: 73 TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 131 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +AV +I LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y + Sbjct: 132 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 191 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236 V EA FL+G L + M A +E A +RD+ + + I + N Sbjct: 192 SVREAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 251 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 + N +D +L + L C+ G++ G +FF T ++ F+ Q Y Sbjct: 252 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 311 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ ++ L+ + ++G +++ GE++ ++ A NA + Q Sbjct: 312 LGKSKPD--IIISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 369 Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + S Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 370 RRLQQSSQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 429 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ K DD A MR VL RR+ ++ + E N WPDVV++DGGK Sbjct: 430 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGES---------VKWPDVVLIDGGK 478 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 GQ+ A V ++L + I ++ IAKGP+R AGME+ + GE L P L+ +Q Sbjct: 479 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQT 536 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFAIT HRK+R KA S L EI GIG R++ LL FG ++ + +S E L Sbjct: 537 VRDESHRFAITGHRKKRDKARVTSSLSEIPGIGSKRRQALLTRFGGLRGVIAASREDLEK 596 Query: 592 IEGISKKIACKIYNHFH 608 +EGISK +A IY H H Sbjct: 597 VEGISKALAETIYEHLH 613 >gi|77459288|ref|YP_348795.1| excinuclease ABC subunit C [Pseudomonas fluorescens Pf0-1] gi|92058695|sp|Q3KBQ0|UVRC_PSEPF RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|77383291|gb|ABA74804.1| excinuclease uvrABC system protein C [Pseudomonas fluorescens Pf0-1] Length = 607 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 218/609 (35%), Positives = 334/609 (54%), Gaps = 25/609 (4%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+M D R+LYVGKA +L+KR+ SY + ++ +I + T+T E E Sbjct: 17 RPGVYRMFDSDARLLYVGKAKSLKKRLASYFRKTGLAPKTAALVGRIAQVETTITSNETE 76 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE +IK +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S Sbjct: 77 ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDGQ-FPRLSIHRGAKKAKGKYFGPYPSA 135 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 A+ ++++ LQ+TFF+R C DS +++RTRPCL +QIKRC PC G + E Y E V + Sbjct: 136 GAIRESLSLLQKTFFVRQCEDSYYKNRTRPCLQYQIKRCKAPCVGLVEPEVYAEDVRHSV 195 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246 FL G +H L +++ M +A + ++E A RD++A L +Q+ +D + Sbjct: 196 MFLEGRSHALTNELSTAMEEAAINLEFERAAELRDQIALLRRVQDQQSMEGGTGDIDVIA 255 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP---CPENI 303 + N AC+ G+ G+ FF + E A++++ FL Q++ P P + Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVAEVMAAFLGQYFISSPERDLPSEL 315 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 +++ E+ L + G ++ I+ +G + + + A+ NA ++ +L+ Sbjct: 316 IVNVVHEDFPALIEAIQALRGRELSISHRVRGTRARWQQLAVTNAEQALGARLANRQHVA 375 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 + + L P+R+E YD SH G + V VV G G +K+ YR++N+ V Sbjct: 376 ARFEALAEVLNLDEPPQRLECYDISHSSGEATVASCVVFGPEGAIKSDYRRYNIEG--VT 433 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD A M L RRFS+L + E L PD++++DGGKGQLS A+ VL Sbjct: 434 AGDDYAAMHQALTRRFSKLKEGEGKL--------------PDILLVDGGKGQLSMARDVL 479 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542 +L V + I ++ +AKG R AG E ++ L P L+ IQ++RDEAHRFAI Sbjct: 480 NELAVPDLI-LLGVAKGATRKAGFETLYLNDAANEFTLRGDSPALHLIQQIRDEAHRFAI 538 Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR K S L+ + G+GP R+R LL+ FG ++ +SR+S E +A GISKK+A Sbjct: 539 TGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIEEIAKAPGISKKLAE 598 Query: 602 KIYNHFHKN 610 IY + H Sbjct: 599 SIYANLHSE 607 >gi|313668463|ref|YP_004048747.1| excinuclease ABC subunit C [Neisseria lactamica ST-640] gi|313005925|emb|CBN87382.1| excinuclease ABC subunit C [Neisseria lactamica 020-06] Length = 628 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 225/617 (36%), Positives = 337/617 (54%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P+ PGVY+ D G+VLYVGKA NL++R+ Y N+H+ RI M+ Q+++I TV Sbjct: 28 LKNLPKLPGVYRFFDEGGKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTV 87 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N IK L P++NIL RDDKS+PY++++ H+ P + +R + YF Sbjct: 88 TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 146 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +AV +I LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRN 206 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236 V EA FL+G L + M A +E A +RD+ + + I + N Sbjct: 207 SVREAATFLNGKTDELTRTLQHKMQAAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 266 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 + N +D +L + L C+ G++ G +FF T ++ F+ Q Y Sbjct: 267 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ I+ + L+ + ++G +++ GE++ ++ A NA + Q Sbjct: 327 LGKSKPDIIISNFPIP--DALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 384 Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + + Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 385 RRLQQSNRQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ K DD A MR VL RR+ ++ + E N WPDVV++DGGK Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPDVVLIDGGK 493 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 GQ+ A V ++L + I ++ IAKGP+R AGME+ + GE L P L+ +Q Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQT 551 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFAIT HRK+R KA S L +I GIG R++ LL FG ++ + +S E L Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLSDIPGIGSKRRQALLTRFGGLRGVIAASREDLEK 611 Query: 592 IEGISKKIACKIYNHFH 608 +EGISK +A IYNH H Sbjct: 612 VEGISKALAETIYNHLH 628 >gi|120554119|ref|YP_958470.1| excinuclease ABC, C subunit [Marinobacter aquaeolei VT8] gi|120323968|gb|ABM18283.1| Excinuclease ABC subunit C [Marinobacter aquaeolei VT8] Length = 619 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 222/615 (36%), Positives = 342/615 (55%), Gaps = 26/615 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 +Q+ E PGVY+M D G +LYVGKA NL+KR+ SY + + ++ +I I T+ Sbjct: 20 LKQLTERPGVYRMYDDTGGILYVGKARNLRKRVSSYFRKSGLAPKTEALVGKIAAIEVTI 79 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI-QGSY 121 T +E EALLLE N+IK L+P +NILLRDDKS+PYI ++ P+L R + G + Sbjct: 80 TGSETEALLLEQNLIKSLRPPYNILLRDDKSYPYIYLSSHSDYPSLTFRRGRTKKGGGIW 139 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPF S AV++++N LQ+ F +RSC++S FR+RTRPCL +QI RC+ PC G IS E+Y Sbjct: 140 FGPFPSSGAVKESLNILQKVFRIRSCSESYFRNRTRPCLQYQINRCTAPCVGFISPEEYQ 199 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--Y 239 E + A FL G N + + + ++M A+ ++E A +RD++ L H+Q Sbjct: 200 EDIRHASMFLEGKNPAIIQDLMQSMEDASRALEFEKAAAYRDQINNLRHVQEQQSVDGEG 259 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295 D ++ + + CI G+ GT +F + E T ++L+ FL Q+Y T Sbjct: 260 GDADVIAIAQDAGVVCIVVIIVRGGRVLGTKDYFPRYSLEQTEGELLASFLGQYYFGGDT 319 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P +IL+ + LL + + + +I +GE+R+ +E A+ NA ++ Sbjct: 320 RREIPRDILVPVAVDGQELLSQALSEAARRETRIRGNVRGERRRWLELAMTNARQTLLTH 379 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L+++ + L L P R+E +D SH G + V VV ENG +K+ YR + Sbjct: 380 LASKETVYRRLLALRDLLELTETPSRMECFDISHSHGENTVASCVVFDENGPLKSDYRLY 439 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A MR VL RR+ +++ E PD+V +DGGKGQ Sbjct: 440 NIQD--ITAGDDYAAMRQVLTRRYRRMVSGE--------------GKRPDLVFIDGGKGQ 483 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLR 534 L+ A+ V ++L + + I +I +AKG R AGME+ G + P L+ IQ +R Sbjct: 484 LNVAREVFEELGISD-IPLIGVAKGVTRRAGMEQLIDALTGAVFRVPADSPALHLIQHIR 542 Query: 535 DEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE+HRFAI+ HR R KK S L+ I G+GP R+R L++ FG ++ + ++S + +A ++ Sbjct: 543 DESHRFAISGHRAGRDKKRRQSTLEGIEGVGPKRRRELIRYFGGIQELRKASVDEMAKVQ 602 Query: 594 GISKKIACKIYNHFH 608 GISK +A IY H Sbjct: 603 GISKSLAETIYAALH 617 >gi|56551568|ref|YP_162407.1| excinuclease ABC subunit C [Zymomonas mobilis subsp. mobilis ZM4] gi|81355285|sp|Q5NPR4|UVRC_ZYMMO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|56543142|gb|AAV89296.1| excinuclease ABC, C subunit [Zymomonas mobilis subsp. mobilis ZM4] Length = 664 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 264/617 (42%), Positives = 373/617 (60%), Gaps = 17/617 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PGVY+M D G +LYVGKA L+ R+ +Y + + RI M+SQ ++ Sbjct: 58 LKTLPLRPGVYRMYDSKGNILYVGKARALRNRVANYTQISGLSRRIQRMVSQTRSMTIVT 117 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPA---LYKHRDSSTIQG 119 T TE EALLLEA +IKR +P +NILLRDDKSFPYIL+ + P L +HR +G Sbjct: 118 TVTESEALLLEAQLIKRYRPPYNILLRDDKSFPYILLKEDGTFPQFPSLQRHRGVKRAKG 177 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 Y+GPFAS D+V T+NSLQ+ F LRSC+DS FR+R RPCLL+QIKRCS PC G IS + Sbjct: 178 KYYGPFASADSVTLTLNSLQKLFLLRSCSDSFFRNRKRPCLLYQIKRCSAPCVGRISEDD 237 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + + + FL+G + ++++K+ M QA+ +YE A ++RDRL AL+ IQ+H Sbjct: 238 YRDLAVDTRDFLAGKSTHVQKKLVTAMEQASNDLNYELAAVYRDRLKALAFIQSHQSINS 297 Query: 240 N---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 D F + LACIQ F QN G ++L E ++ FL QFY D Sbjct: 298 GNLRNADIFGIECRAGLACIQVFFIRNRQNWGHHAYYLNHIDEQPLEDVMQSFLGQFYED 357 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 K P++IL + + ++LE + Q Y+VK P++GE +K+++QA+ NA + ++L Sbjct: 358 KIAPKDILTNYLPSDKNVLEDALSSQRDYRVKFYQPQRGELKKLVDQAVRNAKEAIDRRL 417 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + + + +LK+ F L IP RIE+YDNSHIMG + VG M+V G GF +N YRKFN Sbjct: 418 AEASTQKQLLKEMVNLFHLDKIPDRIEVYDNSHIMGSNMVGGMIVAGPEGFRRNSYRKFN 477 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + DD MMR VL RRFS+L ++S WPD++++DGGKGQ+ Sbjct: 478 IKSPSINPGDDFEMMREVLTRRFSRL---------ERSDPDHSSSEWPDLLLIDGGKGQV 528 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 A + +L + + + I I+ I+KGP R+AG E F + G L +L+++QRLRDE Sbjct: 529 HAVKDILAEQGISD-IAIVGISKGPDRNAGREHFHLVDGSEYALPPNSGLLFYLQRLRDE 587 Query: 537 AHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 AHRFAI THR +R K SPLDE+ GIGP RK+ LL FGT + + +S L + GI Sbjct: 588 AHRFAIGTHRAKRAKNLTSSPLDEVPGIGPSRKKALLLHFGTARDVKNASLSELEKVNGI 647 Query: 596 SKKIACKIYNHFHKNTS 612 S IA +IY+ FH + + Sbjct: 648 SSAIARQIYDFFHHSPA 664 >gi|330958463|gb|EGH58723.1| excinuclease ABC subunit C [Pseudomonas syringae pv. maculicola str. ES4326] Length = 607 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 217/609 (35%), Positives = 331/609 (54%), Gaps = 25/609 (4%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+M D +LYVGK NL+K + SY H + ++++I I T+T E E Sbjct: 17 RPGVYRMFDADATLLYVGKPKNLKKSLASYFRKTGHAPKTGALVARIAQIETTITGNETE 76 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE +IK +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S Sbjct: 77 ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDS-AFPRLSIHRGAKKAKGRYFGPYPSA 135 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 A+ ++++ LQ+TF +R C DS F++RTRPCL +QIKRC GPC G + E Y E V + Sbjct: 136 GAIRESLSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSV 195 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246 FL G ++ L +++ M +A + D+E A RD++A L +Q+ +D + Sbjct: 196 MFLEGRSNALSDELNTAMEKAAMALDFERAAELRDQVALLRRVQDQQSMDGGTGDVDVVA 255 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENI 303 + N AC+ G+ G+ FF + E +++S FL Q++ D+ P + Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAFLAQYFLGGIDRELPGEV 315 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 +++ E+ L + + G ++ I+ +G + + + A+ NA ++ +L+ Sbjct: 316 IVNVVNEDFPALIDAIEELRGVEMVISHRVRGTRARWQQMAVTNAEQALAARLANRQHVA 375 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 + L P R+E YD SH G + V VV G G +K+ YR+FN+ V Sbjct: 376 ARFEALAVVLGLDDPPMRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VT 433 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD A M L RR+S++ E L PDV+++DGGKGQ+S A+ VL Sbjct: 434 AGDDYAAMHQALTRRYSRIKAGEGKL--------------PDVLLVDGGKGQMSMARDVL 479 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542 +L V + I ++ +AKG R AG E ++ L P L+ IQ++RDEAHRFAI Sbjct: 480 NELQVPDLI-LLGVAKGTTRKAGFETLYLNDAAHEFTLPGDSPALHLIQQIRDEAHRFAI 538 Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR K S L+ + G+GP R+R LL+ FG ++ +SR+S + +A GISKK+A Sbjct: 539 TGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAE 598 Query: 602 KIYNHFHKN 610 IY + H Sbjct: 599 SIYANLHSE 607 >gi|309379255|emb|CBX22212.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 617 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 224/617 (36%), Positives = 337/617 (54%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P+ PGVY+ D G+VLYVGKA NL++R+ Y N+H+ RI M+ Q+ +I TV Sbjct: 17 LKNLPKLPGVYRFFDKGGKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVRHIETTV 76 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N IK L P++NIL RDDKS+PY++++ H+ P + +R + YF Sbjct: 77 TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 135 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +AV +I LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y + Sbjct: 136 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 195 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236 V +A FLSG L + M A +E A +RD+ + + I + N Sbjct: 196 SVRQAATFLSGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 255 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 + N +D +L + L C+ G++ G +FF T ++ F+ Q Y Sbjct: 256 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 315 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ I+ + L+ + ++G +++ GE++ ++ A NA + Q Sbjct: 316 LGKSKPDIIISNFPIP--DALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 373 Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + + Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 374 RRLQQSNRQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 433 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ K +D A MR VL RR+ ++ + E N WPDVV++DGGK Sbjct: 434 RYNITTA--KPGNDYAAMREVLTRRYGKMQEAEANGET---------VKWPDVVLIDGGK 482 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 GQ+ A V ++L + I ++ IAKGP+R AGME+ + GE L P L+ +Q Sbjct: 483 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQT 540 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFAIT HRK+R KA S L +I GIG R++ LL FG ++ + +S E L Sbjct: 541 VRDESHRFAITGHRKKRDKARVTSSLSDIPGIGSKRRQALLTRFGGLRGVIAASREDLEK 600 Query: 592 IEGISKKIACKIYNHFH 608 +EGISK +A IYNH H Sbjct: 601 VEGISKALAETIYNHLH 617 >gi|319638199|ref|ZP_07992962.1| UvrABC system protein C [Neisseria mucosa C102] gi|317400472|gb|EFV81130.1| UvrABC system protein C [Neisseria mucosa C102] Length = 613 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 223/617 (36%), Positives = 334/617 (54%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PGVY+ D VLYVGKA NL++R+ SY ++H+ RI M+ Q+++I T+ Sbjct: 13 LKNLPNLPGVYRFFDEDNNVLYVGKAVNLKRRVSSYFQKSDHSPRIALMVKQVHHIETTI 72 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N IK L P++NIL RDDKS+PY++++ H+ P + +R + YF Sbjct: 73 TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 131 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +AV +I LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y + Sbjct: 132 GPYPNSNAVRDSIQLLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGYISEEDYRD 191 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236 V EA FL+G L + M A +E A +RD+ + + I + N Sbjct: 192 SVREAATFLNGKTDELTHTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 251 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 + N +D +L + L C+ G++ G +FF T ++ F+ Q Y Sbjct: 252 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 311 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ ++ L+ + ++G +++ GE++ ++ A NA + Q Sbjct: 312 LGKSKPD--IIISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 369 Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + S Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 370 RRLQQSSQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 429 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ K DD A MR VL RR+ ++ + E N WPDVV++DGGK Sbjct: 430 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGEA---------VKWPDVVLIDGGK 478 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 GQ+ A V ++L + I ++ IAKGP+R AGME+ + GE L P L+ +Q Sbjct: 479 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQT 536 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFAIT HRK+R KA S L EI GIG R++ LL FG ++ + +S E L Sbjct: 537 VRDESHRFAITGHRKKRDKARVTSSLSEIPGIGSKRRQALLTRFGGLRGVIAASREDLEK 596 Query: 592 IEGISKKIACKIYNHFH 608 +EGISK +A IY H H Sbjct: 597 VEGISKALAETIYEHLH 613 >gi|149374951|ref|ZP_01892724.1| excinuclease ABC subunit C [Marinobacter algicola DG893] gi|149360840|gb|EDM49291.1| excinuclease ABC subunit C [Marinobacter algicola DG893] Length = 625 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 226/617 (36%), Positives = 344/617 (55%), Gaps = 26/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 +Q+ E PGVY+M D AG VLYVGKA NL+KR+ SY + + ++S+IN+I T+ Sbjct: 26 LKQLTERPGVYRMYDTAGNVLYVGKARNLKKRVTSYFRKSGLAPKTEALVSRINSIEVTI 85 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI-QGSY 121 T +E EALLLE N+IK L+P +NILLRDDKS+PYI ++ P+L R + G++ Sbjct: 86 TGSETEALLLEQNLIKSLRPPYNILLRDDKSYPYIYLSSHDDYPSLTFRRGRTKKGGGTW 145 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 GPF S AV++++N LQ+ F +RSC++S FR+RTRPCL +QI RC+ PC G IS E Y Sbjct: 146 HGPFPSSGAVKESLNILQKIFRIRSCSESYFRNRTRPCLQYQINRCTAPCVGFISPEDYR 205 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--Y 239 E + A FL G N + + + M A ++E A ++RD++ L H+Q Sbjct: 206 EDMRHATMFLEGKNPAILQDLMAAMETAAKNLEFEKAGVYRDQINHLRHVQEQQSVDGEG 265 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295 D ++ + + CI G+ GT +F + E + A++LS FL Q+Y T Sbjct: 266 GDADVVAISQDAGVVCIVVIIVRGGRVLGTKDYFPRYSIEQSEAELLSAFLGQYYFGGST 325 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P +IL+ + LL + + G ++ +GE+R+ ++ A+ NA ++ Sbjct: 326 RREIPPDILVPVDVGGQELLSQALTESAGRDTRVRKNVRGERRRWLDLAMTNARQTLLTH 385 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L+++ + L L P R+E +D SH G + V VV ENG +K+ YR + Sbjct: 386 LASKETVYRRLLALRDLLDLAETPSRMECFDISHSHGENTVASCVVFDENGPLKSDYRLY 445 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ V DD MR VL RR+ +++ E PD+V +DGGKGQ Sbjct: 446 NIEG--VTGGDDYGAMRQVLTRRYKRMVAGE--------------GKRPDLVFIDGGKGQ 489 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLR 534 L+ A+ V +L V + I +I +AKG R AGME+ G+ + P L+ IQ +R Sbjct: 490 LNIAREVFDELGVTD-IPLIGVAKGVTRRAGMEQLIDAMTGDLYRVPADSPALHLIQHIR 548 Query: 535 DEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE+HRFAIT HR RR KK S L+ I G+GP R+R L++ FG ++ + ++S + ++ ++ Sbjct: 549 DESHRFAITGHRARRDKKRRQSTLEGIEGVGPKRRRDLIRYFGGIQELRKASIDEMSKVQ 608 Query: 594 GISKKIACKIYNHFHKN 610 GIS+ +A IY H Sbjct: 609 GISRNLAETIYAVLHDE 625 >gi|88800063|ref|ZP_01115633.1| excinuclease ABC subunit C [Reinekea sp. MED297] gi|88777189|gb|EAR08394.1| excinuclease ABC subunit C [Reinekea sp. MED297] Length = 611 Score = 547 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 216/613 (35%), Positives = 333/613 (54%), Gaps = 25/613 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY+M D +LYVGKA NL+ R+ SY T++ ++ +I++I T+T Sbjct: 17 NLTSRPGVYRMYDADDTLLYVGKAKNLKNRVASYFRGRGLTNKTVALVQRIHHIETTITH 76 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE +I R KP +NILL DDKS+PY+ ++ H P L+ HR + +FGP Sbjct: 77 SETEALLLEQTLINRHKPPYNILLVDDKSYPYLKLSRSHTWPGLFVHRGKRNSKDEFFGP 136 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV +++ LQ+ F +R C DSVF +R +PCL +QIKRC PC G + E+Y + + Sbjct: 137 FPSAHAVRESLVLLQKAFRIRQCEDSVFENRKKPCLQYQIKRCKAPCVGYVDPEEYEQDL 196 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYNRM 242 + + FL+G + L + I M++A DYE A +RD+L L +Q + Sbjct: 197 DKTRAFLNGKSQQLIDTIEIEMDKAAEVYDYEQAAEYRDQLLFLRKVQEQQYVSGSKGNV 256 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK---PC 299 D F++ CI G+ G+ +FF K E I++ FL Q+Y + C Sbjct: 257 DVFAVVQQPGGVCIHFLMVRDGRMIGSRSFFPKPGIEDDARLIMTGFLAQYYLARHQGDC 316 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P ++L + + LE + +Q G V+I + + K ++ A NA +LS Sbjct: 317 PGSVLTNVPLPDAGSLEAALKEQMGRTVQIQHSVRSQNAKWLQLAETNAAEQLQMRLSHG 376 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + L+ + L +P+R+E +D SH G + V VV + G K+ YRKFN+ Sbjct: 377 LQVTQRLEALREALELEQLPQRLECFDISHSSGEATVASCVVFDQEGPNKSMYRKFNIEG 436 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A M + RR+S+L K E+ + PD++I+DGGKGQ+S A Sbjct: 437 --ITEGDDYAAMTQAISRRYSRLQKEEQAM--------------PDLLIVDGGKGQMSMA 480 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLRDEAH 538 + V+ +L + I ++ +AKG R GME F + + ++L P L+ IQ +RDEAH Sbjct: 481 REVMNELGIA--IPLLGVAKGETRKPGMETLFFETPDQVILLPNHSPALHLIQHIRDEAH 538 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR RR KA S LD+I +GP R+R L++ FG+ + + +S + ++ + GISK Sbjct: 539 RFAITGHRARRGKARVGSLLDDIPQVGPGRRRALIRHFGSAQAVKSASVDEISKVSGISK 598 Query: 598 KIACKIYNHFHKN 610 +A IY+ H + Sbjct: 599 GLARDIYDFLHSS 611 >gi|146282443|ref|YP_001172596.1| excinuclease ABC subunit C [Pseudomonas stutzeri A1501] gi|145570648|gb|ABP79754.1| excinuclease ABC subunit C [Pseudomonas stutzeri A1501] Length = 585 Score = 547 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 209/603 (34%), Positives = 327/603 (54%), Gaps = 25/603 (4%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D ++LYVGKA NL+KR+ SY + ++++I + T+T E EALLLE Sbjct: 1 MFDAQAKLLYVGKAKNLKKRLASYFRKTGQAPKTAALVAKIAQVETTITANETEALLLEQ 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 +IK+ +P +NILLRDDKS+PY+ ++ P L HR + G YFGP+ S A+ ++ Sbjct: 61 TLIKQWRPPYNILLRDDKSYPYVFLSAGE-FPRLSIHRGAKKEPGRYFGPYPSAGAIRES 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194 ++ LQ+ FF+R C DS FR+RTRPCL +QIKRC PC + ++Y E V + FL G Sbjct: 120 LSLLQKAFFVRQCEDSYFRNRTRPCLQYQIKRCKAPCVKLVDPQEYAEDVRHSVMFLEGR 179 Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFSLYHNKN 252 ++ L E+++RNM +A + D+E A RD++ L +Q+ +D + + Sbjct: 180 SNALAEELSRNMEKAAMNLDFERAAEIRDQIGILRRVQDQQSMEGGSGNVDIVAAVVSPG 239 Query: 253 LACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENILLSEEA 309 AC+ G+ G+ FF + E + +++L FL Q+Y ++ P ++++ Sbjct: 240 GACVHLITVRGGRVLGSKNFFPQVAIEESVSEVLQAFLEQYYLGATERDLPSELIVNAVH 299 Query: 310 EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDF 369 E+ + L + + G ++ IT + + + + AL NA ++ +L+ + Sbjct: 300 EDFATLIDAISELRGVELTITHRVRATRARWQQLALTNAEQALGARLANRQHLSARFEAL 359 Query: 370 TKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCA 429 + L P R+E +D SH G + V VV G G +K+ YR++N+ V DD A Sbjct: 360 AEALELDEPPMRLECFDISHSSGEATVASCVVFGPEGPLKSDYRRYNIEG--VTAGDDYA 417 Query: 430 MMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE 489 M L RRF + + E L PD++++DGGKGQL+ A+ VL++L V Sbjct: 418 AMHQALSRRFRKAAEGEGKL--------------PDILLVDGGKGQLNMAREVLEELAVP 463 Query: 490 NRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAITTHRKR 548 I ++ +AKG R G+E ++ L P L+ IQ++RDEAHRFAIT HR R Sbjct: 464 ELI-LLGVAKGVTRKPGLETLYLNDAAHEFTLPADSPALHLIQQVRDEAHRFAITGHRAR 522 Query: 549 RKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 R KA S L+++ GIGP R+R LL FG ++ + R+S + +A GISKK+A IY Sbjct: 523 RGKARRTSTLEDVPGIGPKRRRELLTHFGGLQELCRASLDEIAKAPGISKKLAESIYAAL 582 Query: 608 HKN 610 H Sbjct: 583 HSE 585 >gi|119478435|ref|ZP_01618420.1| excinuclease ABC subunit C [marine gamma proteobacterium HTCC2143] gi|119448521|gb|EAW29768.1| excinuclease ABC subunit C [marine gamma proteobacterium HTCC2143] Length = 625 Score = 547 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 221/616 (35%), Positives = 338/616 (54%), Gaps = 26/616 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PG+YQM G +LY GKA NL+ R+ SY + ++S+I +I+ T+ Sbjct: 26 LKSVTTKPGIYQMYGADGNILYTGKAKNLKNRLSSYFRKQGLAIKTAALVSKIASIQVTI 85 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE+EALLLE N+IK +P +NILLRDDKSFP+I ++ +H+ P L HR + +G YF Sbjct: 86 TNTEIEALLLEHNLIKAQRPPYNILLRDDKSFPFIYLSTQHEFPRLSIHRGAKKTKGRYF 145 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ S AV+++++ LQ+ F +R C DS +++R+RPCL QI RCS PC ++S+++Y Sbjct: 146 GPYPSSGAVKESLSFLQKVFKVRQCEDSYYKNRSRPCLQHQINRCSAPCVNKVSADEYHR 205 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YN 240 V FL G N NL +++A M+ A+ ++E+A +RD++ L +Q Sbjct: 206 AVRHTTMFLEGKNKNLIKELADQMDSASADLNFETAAEYRDQIQHLQQVQASQFIDGESG 265 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT----- 295 +D + + +ACIQ F G+ G+ ++F K + QIL FL Q+Y Sbjct: 266 DIDIAACEYKAGVACIQVLFVRGGRVLGSKSYFPKAYLDEDEEQILEAFLSQYYLVDSAR 325 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P I++S E LL +F ++ G K I + + K + A+ A ++ T Sbjct: 326 GDNMPREIVVSHTLEHAELLSKAFTEKLGRKTTINARVRSNRAKWLALAVETAKQNLTGH 385 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + + + LP PKR+E +D SH G + V VV NG +K+ YR+F Sbjct: 386 LSNKQTIFQRYESLQEALKLPEKPKRLECFDISHSSGEATVASCVVFDANGPLKSDYRRF 445 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M L RR++++ E PDV+ +DGGKGQ Sbjct: 446 NIEG--ITGGDDYAAMHQALTRRYTRIKTGE--------------GVLPDVLFIDGGKGQ 489 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLR 534 +S A VL++L + N + ++ +AKG R AG E F E V+ L+ +Q +R Sbjct: 490 VSQAVAVLEELQITN-LLVVGVAKGTTRKAGFEVLFRADTREEFVMPSDSAGLHLVQHIR 548 Query: 535 DEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE+HRFAIT H++RR KK SPL+ I G+GP R+R LL+ FG + + +S + LA+I Sbjct: 549 DESHRFAITGHKQRRDKKRRESPLEGIPGVGPKRRRELLRHFGGWQEVKAASADDLANIP 608 Query: 594 GISKKIACKIYNHFHK 609 GIS K+A I H Sbjct: 609 GISDKLARDIVAALHN 624 >gi|325142559|gb|EGC64959.1| excinuclease ABC, C subunit [Neisseria meningitidis 961-5945] Length = 628 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 219/617 (35%), Positives = 337/617 (54%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P+ PGVY+ D G+VLYVGKA NL++R+ Y N+H+ RI M+ Q+++I T+ Sbjct: 28 LKNLPKLPGVYRFFDEGGKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 87 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N+IK L P++NIL RDDKS+PY++++ H+ P + +R + YF Sbjct: 88 TRSEAEALILENNLIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 146 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +AV +I LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y + Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 206 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236 V +A FL+G L + M A +E A +RD+ + + I + N Sbjct: 207 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 266 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 + N +D +L + + C+ G++ G +FF T ++ F+ Q Y Sbjct: 267 NNPNDIDLLALAVSDGIVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ ++ L+ + ++G +++ GE++ ++ A NA + Q Sbjct: 327 LGKSKPD--IIISNFSVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 384 Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + + Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 385 RRLQQSNQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ K DD A MR VL RR+ ++ + E N WPD V++DGGK Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPDAVLIDGGK 493 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 GQ+ A V ++L + I ++ IAKGP+R AGME+ + GE L P L+ +Q Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPHSPALHLLQT 551 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFAIT HRK+R KA S L +I G+G R++ LL FG ++ + +S E L Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLSDIPGVGSKRRQALLTRFGGLRGVIAASREDLEQ 611 Query: 592 IEGISKKIACKIYNHFH 608 +EGISK +A IYNH H Sbjct: 612 VEGISKALAETIYNHLH 628 >gi|94499637|ref|ZP_01306174.1| excinuclease ABC subunit C [Oceanobacter sp. RED65] gi|94428391|gb|EAT13364.1| excinuclease ABC subunit C [Oceanobacter sp. RED65] Length = 600 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 212/613 (34%), Positives = 341/613 (55%), Gaps = 26/613 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G +LYVGKA NL+ R+ SY SN ++ ++ +I++I T+ Sbjct: 9 LKHLSTKPGVYRMYDSEGLILYVGKAKNLKNRVSSYFASNGLNNKTMALVQRIDDIEVTI 68 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EALLLE N+IK+ KPR+NILL+DDKS+PYI + H+ P L R G YF Sbjct: 69 TGSETEALLLEQNLIKKHKPRYNILLKDDKSYPYIFCS-DHQYPLLAYVRGKRKKGGEYF 127 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF S AV +++N LQ+ F LR+C DS F +R+RPCL QI RCS PC G IS E Y + Sbjct: 128 GPFPSTYAVRESLNFLQKVFKLRNCEDSYFSNRSRPCLQHQIGRCSAPCVGLISPEDYAK 187 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--N 240 ++ A+ FL G N++L + +M++A+ + D+E A RD++ L IQ Sbjct: 188 DLYHAQMFLRGKNNDLISDLQMDMDRASEQLDFEKAAEFRDQIQHLRKIQESQSIEASDG 247 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--DKP 298 +D F+++ + + + G+ G+ +F+ K + + L+ F+ QFY ++ Sbjct: 248 DLDLFAIHIEQGICVVHVINIREGRMLGSRSFYPKLNMDEDEDAALTAFISQFYLQFNRE 307 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P+ ++ S +T +L + + G KVK++ + ++ + ++ + NA S K Sbjct: 308 IPDEVVCSHTLSDTQVLSGALSEYRGKKVKLSFQVRAQRLRWLQLGINNAKESCRIKSQG 367 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + + ++ +R+E +D SH G + V VV + G +K+ YRKFN+ Sbjct: 368 KQHIAQQYQALQSFLSMEQPIERMECFDISHSHGEATVASCVVFNQEGPLKSDYRKFNIE 427 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR L RRF +L+ +++ PD++++DGGKGQ + Sbjct: 428 G--VEAGDDYGAMRQALTRRFKKLVDDKK----------------PDLLLIDGGKGQTNI 469 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A VL L++ I ++ ++KG R AGME +G+ L+ P L+ IQ++RDE+H Sbjct: 470 ALDVLAGLDISG-IHVLGVSKGVTRKAGMEVLLY-RGKEFTLDKSSPALHLIQQIRDESH 527 Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR RR K S L++I GIG R++ LL+ FG + + ++ + +A + GIS+ Sbjct: 528 RFAITGHRARRGKVRGRSVLEDIPGIGAKRRKELLRFFGDLAQVKAANIDEIAKVPGISR 587 Query: 598 KIACKIYNHFHKN 610 + A +IY+ H Sbjct: 588 QKATEIYSALHDE 600 >gi|311694459|gb|ADP97332.1| excinuclease ABC subunit C [marine bacterium HP15] Length = 620 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 222/617 (35%), Positives = 339/617 (54%), Gaps = 26/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 +Q+ E PGVY+M D G VLYVGKA NL+KR+ SY + ++ +I +I T+ Sbjct: 21 LKQLTERPGVYRMYDEGGSVLYVGKARNLKKRVGSYFRKTGLAPKTEALVGKIASIEVTI 80 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI-QGSY 121 T +E EALLLE N+IK L+P +NILLRDDKS+PYI ++ P+L R + G++ Sbjct: 81 TGSETEALLLEQNLIKSLRPPYNILLRDDKSYPYIYLSSHSDYPSLTFRRGRTKKGGGTW 140 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPF S AV++++N LQ+ F +R+C++S FR+RTRPCL +QI RC+ PC I+ E+Y Sbjct: 141 FGPFPSSGAVKESLNVLQKIFRIRNCSESFFRNRTRPCLQYQINRCTAPCVEYITPEEYQ 200 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--Y 239 + + A FL G N + + M A+ ++E A +RD++ L H+Q Sbjct: 201 QDIRHATMFLEGKNPAILHDLMNAMEAASKNLEFEKAAAYRDQINHLRHVQEQQSVDGEG 260 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295 D ++ + + CI G+ GT +F + E T ++LS FL Q+Y T Sbjct: 261 GDADVIAIAQDAGIVCIVVIIVRGGRVLGTKDYFPRYSIEQTEGELLSAFLGQYYFGGNT 320 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P +IL+ E E LL + + + +I +GE+R+ +E A+ NA ++ Sbjct: 321 RREIPRDILVPVEVEGQELLAQALSESANRETRIRGNVRGERRRWLELAMTNARQTLLTH 380 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L+++ + L L P R+E +D SH G + V VV ENG +K+ YR + Sbjct: 381 LASKETVYRRLLALRDLLELSETPSRMECFDISHSHGENTVASCVVFDENGPLKSDYRLY 440 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ V DD A MR VL RR+ +++ E PD+V +DGGKGQ Sbjct: 441 NIEG--VTAGDDYAAMRQVLSRRYKRMVAGE--------------GKRPDLVFIDGGKGQ 484 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLR 534 L+ A+ V +L + + I +I +AKG R AGME+ G+ + P L+ IQ +R Sbjct: 485 LNIAREVFDELEISD-IPLIGVAKGVTRRAGMEQLIDAMTGDVFRVPADSPALHLIQHIR 543 Query: 535 DEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE+HRFAIT HR RR KK S L+ I G+GP ++R L++ FG ++ + ++ + + ++ Sbjct: 544 DESHRFAITGHRARRDKKRRQSTLEGIEGVGPKKRRDLIRYFGGIQELRKAGVDEMTKVQ 603 Query: 594 GISKKIACKIYNHFHKN 610 GISK +A IY H Sbjct: 604 GISKSLAETIYAALHDE 620 >gi|330994643|ref|ZP_08318566.1| UvrABC system protein C [Gluconacetobacter sp. SXCC-1] gi|329758284|gb|EGG74805.1| UvrABC system protein C [Gluconacetobacter sp. SXCC-1] Length = 598 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 261/603 (43%), Positives = 365/603 (60%), Gaps = 15/603 (2%) Query: 13 YQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLL 72 Y+ML G VLYVGKA NL+KR+ SY H + T R+ M+S+ + + T TE EALLL Sbjct: 2 YRMLGAKGDVLYVGKALNLKKRVTSYTHVSRLTERLRRMVSETHGMEIVTTHTEAEALLL 61 Query: 73 EANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVE 132 E+N IKR++PR+NILLRDDKS+P+I++TD+H+ P + KHR SY+GPFAS +V Sbjct: 62 ESNYIKRMQPRYNILLRDDKSYPWIMLTDRHEFPQISKHRGKPVKGASYWGPFASAWSVN 121 Query: 133 KTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLS 192 +T+N LQRTF LRSC+DS + RTRPCLL QI RCS PCT IS E Y +A+ FL+ Sbjct: 122 QTLNLLQRTFLLRSCSDSEMQGRTRPCLLHQIHRCSAPCTDRISREDYAGLAAQARDFLA 181 Query: 193 GGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS----IYNRMDCFSLY 248 G N +++E++ R M +A ++E A RDR+ LS +Q + D +++ Sbjct: 182 GRNPHMREQLGREMEEAAGALEFERAAAIRDRIRGLSALQQDSSVINPSTVTDADIIAIW 241 Query: 249 HNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEE 308 +CIQ F G+N G FF + +L+ F+ QFY DKP P +L++++ Sbjct: 242 QIAGQSCIQVFFIRAGRNNGNRAFFPSHARDENAPDVLAAFIGQFYDDKPPPAQVLVNQD 301 Query: 309 AEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKD 368 E +L + + G KV+I P++GEKR +IE A INA + ++++ +L+ Sbjct: 302 LPELDVLTAALGLRRGRKVEIIHPRRGEKRGVIEHAEINAREALERRMAESAGQARLLQG 361 Query: 369 FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDC 428 F L P+RIE YDNSHI G +A G MVV G GF K YRKF++ DD Sbjct: 362 VADLFGLAEPPRRIETYDNSHIQGANAYGVMVVGGPEGFDKRAYRKFSIKGPVTPG-DDF 420 Query: 429 AMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNV 488 AMMR VLERRF + +K+ E WPD++++DGG GQ +A +GVL +L V Sbjct: 421 AMMREVLERRFRRALKDREEGVRPE--------DWPDILLIDGGAGQYTAVRGVLDELGV 472 Query: 489 ENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKR 548 +T+++IAKGP R AG E F + L RDP+LY++QRLRDEAHRFAITTHR Sbjct: 473 TG-VTLVAIAKGPDRDAGREWFHTEGRAPFQLPSRDPVLYYLQRLRDEAHRFAITTHRAG 531 Query: 549 RKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 R K S LD+I G+GP RKR LL+ FG+ + + ++ L + GI++ +A IY +F Sbjct: 532 RSKTLVRSELDDIPGVGPARKRALLKHFGSARSVRQAGLGELENAPGINRDMARAIYGYF 591 Query: 608 HKN 610 H + Sbjct: 592 HPD 594 >gi|30248937|ref|NP_841007.1| uvrC nuclease subunit of the excinuclease complex [Nitrosomonas europaea ATCC 19718] gi|81436207|sp|Q820N6|UVRC_NITEU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|30138554|emb|CAD84844.1| uvrC Nuclease subunit of the excinuclease complex [Nitrosomonas europaea ATCC 19718] Length = 604 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 235/611 (38%), Positives = 341/611 (55%), Gaps = 27/611 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+ML+ AG V+YVGKA +L+KR+ SY + + RI M+SQI I TVT Sbjct: 14 TLPAQPGVYRMLNAAGDVIYVGKAIDLRKRVSSYFQKSGLSPRIQLMVSQIAGIETTVTR 73 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+L+T +H P L +R + + YFGP Sbjct: 74 SEAEALLLENNLIKSLAPRYNILFRDDKSYPYLLLT-RHIFPRLAFYRGALDDRHQYFGP 132 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F + V+ +I LQ+ F LR+C +SVF HRTRPCLL+QIKRCSGPC G I+ E Y + V Sbjct: 133 FPNAGVVKSSIQLLQKVFRLRTCENSVFDHRTRPCLLYQIKRCSGPCVGLITPEAYQQDV 192 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 A FL G + + I + M A+ ++DYE A RD++ AL IQ Sbjct: 193 KSAAMFLQGKQDEVLKTIEQKMFTASDQQDYEQAAQLRDQMQALRKIQEKQFVDSGKALD 252 Query: 242 MDCFSLYHNKNLACIQTC--FFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 D + + + G++ G TFF + E+ + +L F+ Q Y ++ Sbjct: 253 ADVIACAIEPDSHAVAVNLVMIRSGRHLGDKTFFPQNVYEADISTVLEAFVTQHYLNRSV 312 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P I+L ++ +LL+ Q G+K+ +T GE+RK ++ A NA + Q L + Sbjct: 313 PPLIILGQKI-RVTLLQKLLSDQAGHKITLTTNPIGERRKWLDMAAENAQLALQQMLIQQ 371 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 S + L+ + LP + RIE +D SH MG + + VV +YR++N+ Sbjct: 372 ASQEDRLQALQEALNLPGLA-RIECFDISHTMGEATIASCVVYDRFAMRNGEYRRYNI-- 428 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A MR VL+RR+++L E L PD++++DGGKGQ+ A Sbjct: 429 TGIVPGDDYAAMRDVLQRRYAKLAMEEGKL--------------PDLILIDGGKGQIRVA 474 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYFIQRLRDEAH 538 V+ +L + N I ++ +AKG R G+E+ + EAL L P L+ IQ++RDEAH Sbjct: 475 SEVMIELGL-NDIPLVGVAKGETRKPGLEQLILPWQEEALHLPDDHPALHLIQQIRDEAH 533 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAI HR +R K S L++I+GIG R++ LL FG +K + +S E L EGIS+ Sbjct: 534 RFAIQGHRAKRAKTRKISTLEQISGIGTKRRQSLLTRFGGLKGVKNASIEELQQTEGISR 593 Query: 598 KIACKIYNHFH 608 +A KIY Sbjct: 594 SLAEKIYRELR 604 >gi|114771344|ref|ZP_01448764.1| excinuclease ABC subunit C [alpha proteobacterium HTCC2255] gi|114548269|gb|EAU51156.1| excinuclease ABC subunit C [alpha proteobacterium HTCC2255] Length = 599 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 267/604 (44%), Positives = 373/604 (61%), Gaps = 14/604 (2%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+ML+ G VLYVGKA NL++R+ SY H+ RI MIS +++ F T TE E Sbjct: 3 SPGVYRMLNQDGEVLYVGKARNLKRRVSSYAKPTGHSARIGRMISNTSSMMFLTTQTETE 62 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE N+IK+LKPR+N+LLRDDKSFP I+I+ H+ P + KHR + YFGPFASV Sbjct: 63 ALLLEQNLIKQLKPRYNVLLRDDKSFPNIMISSSHEFPKIAKHRGRRSKGSEYFGPFASV 122 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 +V +T++ LQR F LR+C D+ F RTR CL +QI RCSGPC G+ISS Y + V +A+ Sbjct: 123 TSVNRTLHHLQRIFLLRTCTDNDFSSRTRACLQYQIARCSGPCVGKISSNNYNQLVDDAR 182 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNRMDCF 245 KFL G + ++E +A+ M +A+ +E A RDR+ AL+++Q+ N D Sbjct: 183 KFLQGKSTKIQESMAKEMAEASRDLQFEKAASLRDRIRALTNVQSSQGINPQTVNEADIV 242 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILL 305 SLY + ACIQ F QN G F+ + S + +++ FL QFY +K P+ IL+ Sbjct: 243 SLYMEGDQACIQVFFIRANQNWGNRAFYPRNTSGADADEVMESFLAQFYDNKTPPKLILV 302 Query: 306 SEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365 S LL + + G KV+I PK+GE+ +++ A NA S +K+S + + Sbjct: 303 SCTVSNLDLLVDALSSKRGNKVEIIQPKRGERAELVFNAERNARESLARKMSESATQAKL 362 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 LK + F+L + PKRIE+YDNSHI G AVG M+ G +G++K+ YRK+N+ D Sbjct: 363 LKGVSDAFSLENTPKRIEVYDNSHIQGAFAVGAMIASGPDGYMKSSYRKYNIRYEDTVAG 422 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD MM+ VLERRF LIK + + +WPD++++DGG GQ+SA +L + Sbjct: 423 DDFGMMKEVLERRFKSLIKED---------PDKKTENWPDLLLIDGGAGQVSAVAEILTE 473 Query: 486 LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545 L + N + + +AKG R G E+F K L DP+LYFIQRLRDEAHRFAITTH Sbjct: 474 LGI-NDVPFVGVAKGIDRDQGKEEFHCKGKPVFALQRNDPVLYFIQRLRDEAHRFAITTH 532 Query: 546 RKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 R +R KA + LDE+ G+G RKR +L FG+ K SR+S + L ++EG+S K+A IY Sbjct: 533 RAKRSKAIGITTLDEVPGVGAARKRAILAHFGSAKSASRASLKDLKAVEGLSSKMAQIIY 592 Query: 605 NHFH 608 + +H Sbjct: 593 DFYH 596 >gi|254805125|ref|YP_003083346.1| putative excinuclease ABC subunit C [Neisseria meningitidis alpha14] gi|254668667|emb|CBA06357.1| putative excinuclease ABC subunit C [Neisseria meningitidis alpha14] Length = 628 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 221/617 (35%), Positives = 337/617 (54%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P+ PGVY+ D G+VLYVGKA NL++R+ Y N+H+ RI M+ Q+++I T+ Sbjct: 28 LKNLPKLPGVYRFFDEGGKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 87 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N+IK L P++NIL RDDKS+PY++++ H+ P + +R + YF Sbjct: 88 TRSEAEALILENNLIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 146 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +AV +I LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y + Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 206 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236 V +A FL+G L + M A +E A +RD+ + + I + N Sbjct: 207 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 266 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 + N +D SL + + C+ G++ G +FF T ++ F+ Q Y Sbjct: 267 NNPNDIDLLSLAVSDGIVCVHWVSIRGGRHVGDKSFFPDTKNDPDPNGQDYAEAFVAQHY 326 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ ++ L+ + ++G +++ GE++ ++ A NA + Q Sbjct: 327 LGKSKPD--IIISNFSVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 384 Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + S Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 385 RRLQQSSQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ K DD A MR VL RR+ ++ + E N WPD V++DGGK Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPDAVLIDGGK 493 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 GQ+ A V ++L + I ++ IAKGP+R AGME+ + GE L P L+ +Q Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPHSPALHLLQT 551 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFAIT HRK+R KA S L +I G+G R++ LL FG ++ + +S E L Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLSDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 611 Query: 592 IEGISKKIACKIYNHFH 608 +EGISK +A IYNH H Sbjct: 612 VEGISKALAETIYNHLH 628 >gi|254480717|ref|ZP_05093964.1| excinuclease ABC, C subunit [marine gamma proteobacterium HTCC2148] gi|214039300|gb|EEB79960.1| excinuclease ABC, C subunit [marine gamma proteobacterium HTCC2148] Length = 591 Score = 545 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 222/600 (37%), Positives = 338/600 (56%), Gaps = 24/600 (4%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D AG++LYVGKA NL+ R+ SY ++ T + ++S+I++I+ TVT TEV+ALLLE Sbjct: 1 MYDEAGKLLYVGKAKNLKNRVGSYFRASGLTDKTLALVSRIHDIQVTVTSTEVDALLLEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N+IK +P +NILL+DDKSFPYI I+ K P + HR + +G YFGP+ S AV ++ Sbjct: 61 NLIKNYQPPYNILLKDDKSFPYIYIST-DKYPRISLHRGAQKGKGHYFGPYPSAGAVRES 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194 ++ LQ+ F +R C +S FR+R+RPCL QI RC+ PC ++ + Y + V FL G Sbjct: 120 LHFLQKVFKVRQCENSYFRNRSRPCLQHQIDRCTAPCVDIVTEDDYGQQVENTSLFLRGK 179 Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFSLYHNKN 252 + L ++A +M QA K ++ESA + RD+LA L H+Q +D + + Sbjct: 180 SQQLMVRLADDMEQAAAKLEFESAAVLRDQLAQLQHVQASQGIEGVKGDLDILAAAVDTG 239 Query: 253 LACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCPENILLSEEAE 310 AC+Q F + G+ T++ E + ++L+ F+ Q+Y + + P I+++EE + Sbjct: 240 RACVQVLFVRGARVLGSKTYYPPLKLEESPGEVLAAFVPQYYLNGTRAVPGEIIVNEEPD 299 Query: 311 ETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFT 370 S L + Q KV++ + + + + A A + L+ + + Q L+ Sbjct: 300 SVSALAEALSVQAERKVQLRSRVRDARARWLRLAQQTAETNLAAHLAGKQTVQARLQALQ 359 Query: 371 KKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAM 430 + +LP +P+R+E +D SH G + V VV +NG K+ YRKFN+ + DD A Sbjct: 360 ECLSLPEVPERMECFDISHSSGEATVASCVVFDQNGARKSDYRKFNIEG--ITGGDDYAA 417 Query: 431 MRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVEN 490 M+ LERR+ +L E + PD++ +DGGKGQ+S A GVL+ L + Sbjct: 418 MQQALERRYKRLKSGE--------------GTQPDILFIDGGKGQVSQAMGVLEDLQISG 463 Query: 491 RITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR 549 + +I +AKG R AG E G L P L+ IQ++RDEAHRFAIT HR RR Sbjct: 464 -VLVIGVAKGATRKAGFETLIDGATGRESQLPGDSPALHLIQQIRDEAHRFAITGHRARR 522 Query: 550 KKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 KA S L++I G+G R+R LL+ FG+ + +S E L I GIS +A +IY+H H Sbjct: 523 DKARQRSVLEDIPGVGAKRRRELLRHFGSASGVVNASVEELKKISGISATMAAQIYDHLH 582 >gi|158425590|ref|YP_001526882.1| excinuclease ABC C subunit [Azorhizobium caulinodans ORS 571] gi|158332479|dbj|BAF89964.1| excinuclease ABC C subunit [Azorhizobium caulinodans ORS 571] Length = 718 Score = 545 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 291/661 (44%), Positives = 390/661 (59%), Gaps = 55/661 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 +++ P PGVY+ML G VLYVGKA +++KRI SY HT+RI MI+ ++ F Sbjct: 54 AAKHAPTGPGVYRMLGADGTVLYVGKAKSIKKRILSYTRLVGHTNRIARMIAATASMEFV 113 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T TE EALLLEAN+IK+LKPRFN+LLRDDKSFPYILIT H P + KHR + + G Y Sbjct: 114 STATEPEALLLEANLIKQLKPRFNVLLRDDKSFPYILITADHPAPQILKHRGARSRPGDY 173 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GPFASV AV++TIN+LQR F LRSC+DS + +R+RPCLL+QIKRCSGPCTGE+S+ Y Sbjct: 174 YGPFASVWAVDRTINALQRAFLLRSCSDSYYENRSRPCLLYQIKRCSGPCTGEVSTTDYA 233 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 E V EA+ FL+G + +KE++A+ M A + ++E A RDRLAALS +Q Sbjct: 234 ELVREARAFLAGRSRAIKEELAKEMEAAAEELEFERAARLRDRLAALSAVQGSQGINPRS 293 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F+ + CI+ FF GQN G ++ + D +L FL QFY DKP Sbjct: 294 VEEADVFACHQQGGATCIEVFFFRTGQNWGNRAYYPRADRSLDEKDVLGPFLSQFYEDKP 353 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 CP ILLS E EE L+ + ++ GYKV+I+ PK+GEKR +++ AL NA + +KL+ Sbjct: 354 CPRLILLSHEVEEQDLIAEALSQKAGYKVEISAPKRGEKRDLVDHALQNAREALGRKLAE 413 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + +L F L P+RIE+YDNSHIMG +AVG M+V G GF K+QYRKFN+ Sbjct: 414 TATQGKLLDGVAAAFKLEKPPQRIEVYDNSHIMGTNAVGGMIVAGPEGFRKSQYRKFNIK 473 Query: 419 PNDVKTQDDCAMMRMV------------------------------------------LE 436 D+ DD MMR V E Sbjct: 474 SADLVPGDDYGMMREVLRRRFSRLLREAPRGGAAPAVAPLAPAPTDLPAPPPAPTAAAQE 533 Query: 437 RRFSQLIKNEENLNFHPKKQEYSF--------PSWPDVVILDGGKGQLSAAQGVLKKLNV 488 ++ E ++ P + WPD+V++DGG GQL+AA+ V+ +L + Sbjct: 534 TWRTRGEPGEIPVDPAPLPPTPAEVQEAADEASPWPDLVLIDGGLGQLNAARAVMDELGI 593 Query: 489 ENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKR 548 + + ++ IAKG R AG E+FF+ + + RDP+LYFIQRLRDEAHRFAI +HR R Sbjct: 594 TD-VPMVGIAKGLDREAGREQFFIPGQQPFRMEPRDPVLYFIQRLRDEAHRFAIGSHRAR 652 Query: 549 RKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 RKK L I G+GP RKR LL+ FGT+K I R+S L + G++ A IY +F Sbjct: 653 RKKDISDAGLQAIPGVGPTRKRALLRHFGTLKAIERASLADLEQVPGVNASTARAIYEYF 712 Query: 608 H 608 H Sbjct: 713 H 713 >gi|297184225|gb|ADI20343.1| nuclease subunit of the excinuclease complex [uncultured alpha proteobacterium EB080_L27A02] Length = 625 Score = 545 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 269/610 (44%), Positives = 376/610 (61%), Gaps = 14/610 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+ML+ G VLYVGKA NL++R+ SY H+ RI MIS +++ F Sbjct: 23 LKTLDGSPGVYRMLNQDGEVLYVGKARNLKRRVSSYAKPTGHSARIGRMISNTSSMMFLT 82 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N+IK+LKPR+N+LLRDDKSFP I+I+ H+ P + KHR + YF Sbjct: 83 TQTETEALLLEQNLIKQLKPRYNVLLRDDKSFPNIMISSSHEFPKIAKHRGRRSKGSEYF 142 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPFASV +V +T++ LQR F LR+C DS F RTR CL +QI RCSGPC G+ISS Y + Sbjct: 143 GPFASVTSVNRTLHHLQRIFLLRTCTDSDFSSRTRACLQYQIARCSGPCVGKISSNNYNQ 202 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---Y 239 V +A+KFL G + ++E +A+ M +A+ +E A RDR+ AL+++Q+ Sbjct: 203 LVDDARKFLQGKSTKIQESMAKEMAEASRDLQFEKAASLRDRIRALTNVQSSQGINPQTV 262 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 N D SLY + ACIQ F QN G F+ + S + +++ FL QFY +K Sbjct: 263 NEADIVSLYMEGDQACIQVFFIRANQNWGNRAFYPRNTSGADADEVMESFLAQFYDNKTP 322 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P+ IL+S LL + + G KV+I PK+GE+ +++ A NA S +K+S Sbjct: 323 PKLILVSCTVSNLDLLVDALSSKRGNKVEIIQPKRGERAELVFNAERNARESLARKMSES 382 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + +LK + F+L +IPKRIE+YDNSHI G AVG M+ G +G++K+ YRK+N+ Sbjct: 383 ATQAKLLKGVSDAFSLENIPKRIEVYDNSHIQGAFAVGAMIASGPDGYMKSSYRKYNIRY 442 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 D DD MM+ VLERRF LIK + + +WPD++++DGG GQ+SA Sbjct: 443 EDTVAGDDFGMMKEVLERRFKSLIKED---------PDKKTENWPDLLLIDGGAGQVSAV 493 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 +L +L + N + + +AKG R G E+F K L DP+LYFIQRLRDEAHR Sbjct: 494 AEILTELGI-NDVPFVGVAKGIDRDQGKEEFHCKGKPVFALQRNDPVLYFIQRLRDEAHR 552 Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAITTHR +R KA + LDE+ G+G RKR +L FG+ K SR+S + L ++EG+S K Sbjct: 553 FAITTHRAKRSKAIGITTLDEVPGVGAARKRAILAHFGSAKSASRASLKDLKAVEGLSSK 612 Query: 599 IACKIYNHFH 608 +A IY+ +H Sbjct: 613 MAQIIYDFYH 622 >gi|218768346|ref|YP_002342858.1| excinuclease ABC subunit C [Neisseria meningitidis Z2491] gi|11278017|pir||G81845 excinuclease ABC subunit C NMA1540 [imported] - Neisseria meningitidis (strain Z2491 serogroup A) gi|121052354|emb|CAM08686.1| excinuclease ABC subunit C [Neisseria meningitidis Z2491] Length = 628 Score = 545 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 219/617 (35%), Positives = 335/617 (54%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P+ PGVY+ D G+VLYVGKA NL++R+ Y N+H+ RI M+ Q+++I T+ Sbjct: 28 LKNLPKLPGVYRFFDEGGKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 87 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N IK L P++NIL RDDKS+PY++++ H+ P + +R + YF Sbjct: 88 TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 146 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +AV +I LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y + Sbjct: 147 GPYPNSNAVRDSIQILQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 206 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236 V +A FL+G L + M A +E A +RD+ + + I + N Sbjct: 207 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 266 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 + N +D +L + L C+ G++ G +FF T ++ F+ Q Y Sbjct: 267 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ ++ L+ + ++G +++ GE++ ++ A NA + Q Sbjct: 327 LGKSKPD--IIINNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 384 Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + + Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 385 RRLQQSNQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ K DD A MR VL RR+ ++ + E N WPD V++DGGK Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPDAVLIDGGK 493 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 GQ+ A V ++L + I ++ IAKGP+R AGME+ + GE L P L+ +Q Sbjct: 494 GQIGIAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQT 551 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFAIT HRK+R KA S L +I G+G R++ LL FG ++ + +S E L Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLSDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 611 Query: 592 IEGISKKIACKIYNHFH 608 +EGISK +A IY H H Sbjct: 612 VEGISKALAETIYEHLH 628 >gi|258517046|ref|YP_003193268.1| excinuclease ABC subunit C [Desulfotomaculum acetoxidans DSM 771] gi|257780751|gb|ACV64645.1| excinuclease ABC, C subunit [Desulfotomaculum acetoxidans DSM 771] Length = 624 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 213/625 (34%), Positives = 334/625 (53%), Gaps = 23/625 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 + +P PGVY D+AG ++YVGKA +L+ R++SY S+ N T ++ M+ +I ++ + Sbjct: 6 KLQYLPAKPGVYIYRDMAGEIIYVGKAVSLKNRVRSYFQSSANLTPKVRAMVPKIADLEY 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +EVEAL+LE+N+IK +PR+N+ L+DDKS+PY+ IT P +Y R Sbjct: 66 IVTDSEVEALILESNLIKEHRPRYNVFLKDDKSYPYLKITLNEDFPRVYITRRVIKDGAR 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGP+ V AV +T+ L++ F R+C R RPCL IKRC GPC G ++Y Sbjct: 126 YFGPYTRVGAVHETLRLLKKLFPFRTCKQKEPPVRDRPCLNHYIKRCLGPCCGLTGKQEY 185 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + V E FL G +L + + + M +A +E A RD+L A++ + ++ Sbjct: 186 RKAVDEICLFLEGRQEDLVKHLKKRMEEAAEALRFEQAAELRDQLRAVNEVMEKQKIVFA 245 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D ++ + C+ F G+ G + L+ + ++++ F++Q+Y Sbjct: 246 GPEDRDVVAMARGISETCVMIFFIRGGKLTGREHYLLQGTEDMDRREVVTAFIKQYYHQA 305 Query: 298 P-CPENILLSEEAEET-SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA------- 348 P +LL EE +++ ++ G +V + VPK+GEKR ++E A NA Sbjct: 306 DFLPREVLLPGMVEEEAAVISRWLSEKKGSRVNLRVPKRGEKRGLLEMAEKNALLLLDQI 365 Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 + + + + L + L P R+E YD S+ G V MVV Sbjct: 366 EQEKLSARQDKDNLEAALGELAGALGLAKPPYRLECYDISNTQGTETVASMVVFEAGRPQ 425 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP-KKQEYSFPSWPDVV 467 K+QYR+F + V +D A M+ V+ RRF + + E +N +E F PD V Sbjct: 426 KDQYRRFKIKT--VDGPNDFASMQEVIGRRFKRGKEERELINTGQLSTKEAKFHRLPDCV 483 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPIL 527 I+DGGKGQLSAA+ V+++L I +AK + F + E + L L Sbjct: 484 IIDGGKGQLSAARSVMQELGFA-HIPAFGLAKQEEL-----LFKEGEKEPVFLPRDSHAL 537 Query: 528 YFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586 Y +QRLRDEAHRFA+T HR+ R K S LDE++GIGP R+R LL++FG+++ ISR+ Sbjct: 538 YLVQRLRDEAHRFAVTYHRQLRSKRNLKSLLDEVDGIGPKRRRELLKAFGSLEDISRAGL 597 Query: 587 ETLASIEGISKKIACKIYNHFHKNT 611 L+++EG++KK A +YN+FH+ Sbjct: 598 GELSAVEGMNKKAAEAVYNYFHQKE 622 >gi|85707930|ref|ZP_01038996.1| excinuclease ABC subunit C [Erythrobacter sp. NAP1] gi|85689464|gb|EAQ29467.1| excinuclease ABC subunit C [Erythrobacter sp. NAP1] Length = 653 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 255/610 (41%), Positives = 359/610 (58%), Gaps = 10/610 (1%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + + PGVY+MLD G VLYVGKA +L+ R+ +Y N T R+ M+SQ ++ T Sbjct: 46 KTLKPVPGVYRMLDARGDVLYVGKARSLKARVANYTQVNQLTTRLMRMVSQCRSMEIVTT 105 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E EALLLEA +IKR +P FN+LLRDDKSFP+IL+ H+ P ++KHR + +G+Y+G Sbjct: 106 NSEAEALLLEAQLIKRFRPPFNVLLRDDKSFPFILLRADHEFPRIHKHRGARRAKGNYYG 165 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS +V T+N+LQ+ F LRSC DS F +R RPCLL+QIKRCS PC IS E Y Sbjct: 166 PFASAGSVNTTLNALQKLFLLRSCTDSFFNNRDRPCLLYQIKRCSAPCVDRISVEDYDAL 225 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V +AK FL+G + ++ + + M +A + D+E+A I RDRL A + IQ Sbjct: 226 VSQAKDFLAGKSSQVQADLEKQMAKAAEELDFETAAILRDRLRAATFIQGSQAINAKAVG 285 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+L C+Q F GQN G FF + AQ+L+ + QFY + P P Sbjct: 286 DADVFALAAKGGQICVQAFFIRGGQNWGHRAFFPSHTKDVGEAQVLADVMLQFYEEVPPP 345 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 +L+ + E L+E + + KV+I++P++G++RK++ QA NA + ++L+ Sbjct: 346 PMVLVDRDLPEGELMEAALTEIADKKVQISIPQRGDRRKLMAQASRNAVDALDRRLAETG 405 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 + + ++ + L P+RIE+YDNSHI G AVG MVV GF K+QYRKFN+ Sbjct: 406 TKAKVNRELAEFLELGEPPERIEVYDNSHIQGAKAVGAMVVASPEGFEKSQYRKFNIREA 465 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 DD MMR V+ RRF L EN + K+ WPD+V++DGGKGQ+S+ Sbjct: 466 QT--NDDFGMMREVMRRRFRNL---AENPDGESGKKNSHETIWPDLVLIDGGKGQVSSVM 520 Query: 481 GVLKKLNVENRITIISIAKGPKR-SAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 VL++L + + + ++ IAKGP G E F G L P+L++ QRLRDE HR Sbjct: 521 EVLEELGIADEVPVVGIAKGPHHGREGREVFHFPDGREKTLPTNSPVLFYAQRLRDEVHR 580 Query: 540 FAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 + I HR +R KA SPLDEI GIGP RKR LL FGT + ++ E L G+S Sbjct: 581 YVIGAHRAKRSKAITASPLDEIPGIGPARKRALLLHFGTASKVRAAALEDLQRAPGVSDA 640 Query: 599 IACKIYNHFH 608 +A KIY+ +H Sbjct: 641 VARKIYDFYH 650 >gi|307822420|ref|ZP_07652652.1| excinuclease ABC, C subunit [Methylobacter tundripaludum SV96] gi|307736986|gb|EFO07831.1| excinuclease ABC, C subunit [Methylobacter tundripaludum SV96] Length = 613 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 220/615 (35%), Positives = 335/615 (54%), Gaps = 21/615 (3%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PG+Y+M + G ++Y+GKA NL+ R+ SY + + M+++I NI TV Sbjct: 16 LKNLTTRPGIYKMFNDQGEIIYIGKAKNLKNRVSSYFKKQTASTKQQAMVARIANIEVTV 75 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE IKR KPR+NI LRDD+S+PYI ++ +H P + HR + +G YF Sbjct: 76 THTEGEALLLECQQIKRHKPRYNICLRDDRSYPYIFLSSEHDFPQITLHRGAKKRKGKYF 135 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + A+++++ LQR F +R C DS++ +R+RPCL QI+RC+ PC G I Y + Sbjct: 136 GPYPGIGAIKESLKLLQRIFPIRQCDDSIYNNRSRPCLQHQIERCTAPCVGLIDKAAYAQ 195 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--N 240 V FL G L +++ M QA K +YE A RD++ L + + Sbjct: 196 DVDSTVLFLEGKGGLLIDQLIVKMEQAAAKLEYERAAGFRDQILKLRSVLEKHFVHGERG 255 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 +D + +AC+Q F GQ+ G FF K E A I+ F+ Q+Y DK P Sbjct: 256 DVDIIACATKAGVACVQVFFIRNGQHLGNKVFFPKITDEHDPAAIVQAFIPQYYLDKQVP 315 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 +++S + EE LL Q + V I+ +GE+ K ++ A NA S KLS + Sbjct: 316 HELIVSHQPEEAELLMEVLAVQAKHAVAISHNVRGERLKWLQMACTNAENSLLSKLSDKQ 375 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 ++ +PKR+E +D SH G V VV G VK+ YR+FN+ Sbjct: 376 GIYARFLSLQEELGCTELPKRLECFDISHTQGDQTVASCVVFDREGPVKSAYRRFNIEG- 434 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 + DD A + + RRF +L + E + PD++++DGGKGQ+ AQ Sbjct: 435 -ITGGDDYAAIHQAVFRRFKRLKQGE--------------HTAPDILLIDGGKGQVHEAQ 479 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHR 539 L +L++ N + I+ ++KGP R GMEK + E + + L IQ +RDEAHR Sbjct: 480 KALAELDI-NNVMIVGVSKGPDRKPGMEKLILVDQEQPIDIKPGASGLLLIQHIRDEAHR 538 Query: 540 FAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAIT HR+RR KA S ++ I G+GP R+++LL+ FG ++ IS++ + L S++GIS+ Sbjct: 539 FAITGHRQRRGKAKKQSAMEAIPGLGPKRRQILLKQFGGLQGISQAGVDALCSVDGISRH 598 Query: 599 IACKIYNHFHKNTSH 613 +A +IY FH + Sbjct: 599 LAQRIYELFHHQDDN 613 >gi|304387362|ref|ZP_07369554.1| excision endonuclease subunit UvrC [Neisseria meningitidis ATCC 13091] gi|304338613|gb|EFM04731.1| excision endonuclease subunit UvrC [Neisseria meningitidis ATCC 13091] Length = 628 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 221/617 (35%), Positives = 336/617 (54%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P+ PGVY+ D G+VLYVGKA NL++R+ Y N+H+ RI M+ Q+++I T+ Sbjct: 28 LKNLPKLPGVYRFFDEGGKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 87 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N IK L P++NIL RDDKS+PY++++ H+ P + +R + YF Sbjct: 88 TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 146 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +AV +I LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G I+ E Y + Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRARPCLLYQIKRCTAPCVGHINEEDYRD 206 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236 V EA FL+G L + M A +E A +RD+ + + I + N Sbjct: 207 SVREAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 266 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 + N +D +L + L C+ G++ G +FF T ++ F+ Q Y Sbjct: 267 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ ++ L+ + ++G +++ GE++ ++ A NA + Q Sbjct: 327 LGKSKPD--IIISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 384 Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + S Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 385 RCLQQSSQQHRIDELAKILNMNSDDLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ K DD A MR VL RR+ ++ + E N WPDVV++DGGK Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPDVVLIDGGK 493 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 GQ+ A V ++L + I ++ IAKGP+R AGME+ + GE L P L+ +Q Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQT 551 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFAIT HRK+R KA S L +I G+G R++ LL FG ++ + +S E L Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLSDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 611 Query: 592 IEGISKKIACKIYNHFH 608 +EGISK +A IY H H Sbjct: 612 VEGISKALAETIYEHLH 628 >gi|295688387|ref|YP_003592080.1| excinuclease ABC, C subunit [Caulobacter segnis ATCC 21756] gi|295430290|gb|ADG09462.1| excinuclease ABC, C subunit [Caulobacter segnis ATCC 21756] Length = 634 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 270/618 (43%), Positives = 380/618 (61%), Gaps = 23/618 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P+ PGVY+M+ VLYVGKA +L+KR+ Y HT+RI HM+ ++ F T Sbjct: 26 RLPDAPGVYRMIGEGDEVLYVGKAKSLKKRVIQYAQGRFHTNRIAHMVDATRSMEFVTTR 85 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE N+IK LKPRFN+LLRDDKSFP I+I H P L KHR + TI+G YFGP Sbjct: 86 TEADALLLEINLIKSLKPRFNVLLRDDKSFPEIVIRRDHDAPQLRKHRGAHTIKGDYFGP 145 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 FAS AV +T+N+LQ+ F LRSC+DSV+ R RPC+L QIKRC+ PCTG I + Y V Sbjct: 146 FASAWAVNRTLNTLQKAFLLRSCSDSVYETRDRPCMLHQIKRCAAPCTGLIGKDDYQALV 205 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241 +A+ FL G + + +A+ M A ++E A RDR+ ALS + Sbjct: 206 DQAEAFLRGKSRAVIASMAKQMEDAAEDLEFERAARLRDRIRALSSVAQETQINPETVEE 265 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ---------ILSYFLRQ 292 D +L+ AC+Q FF GQN G +F + + ++ I++ FL Q Sbjct: 266 ADVVALHVEGGQACVQVFFFRAGQNWGNRAYFPRITGAADESEEEGVTEEQRIITAFLGQ 325 Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 FY DKP P IL + + E+ LL +F + G KV+I+VPK+GEK +++ AL NA + Sbjct: 326 FYDDKPIPRLILANIQPAESELLSEAFALKSGRKVEISVPKRGEKADLVQHALTNAKEAL 385 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 +K++ + +L + F L P+RIE+YDNSHI G +AVG M+V G GF+K QY Sbjct: 386 GRKMAESGAQTKLLAGVCEAFKLEASPERIEVYDNSHIQGTNAVGGMIVAGPEGFMKGQY 445 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472 RKFN+ ++ DD MM+ VL RRF++L+K EE + + PD+V++DGG Sbjct: 446 RKFNIKSTELTPGDDYGMMKEVLRRRFARLVKEEEEGDSENR---------PDLVLVDGG 496 Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532 KGQL AA ++ L V++ I ++ +AKGP R AG+E+FF+ +L + P+LY++QR Sbjct: 497 KGQLDAALEIMADLGVDD-IAVVGVAKGPDRDAGLERFFLPGQPPFMLEPKSPVLYYLQR 555 Query: 533 LRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 LRDEAHRFAI HR RR +PLDEI G+GP RK+ LL +FG+ K + R+S E L Sbjct: 556 LRDEAHRFAIGAHRTRRSMDLKKNPLDEIEGVGPGRKKALLHAFGSAKGVGRASVEDLVK 615 Query: 592 IEGISKKIACKIYNHFHK 609 +EG+S+ +A +I+ F K Sbjct: 616 VEGVSQALAERIHGFFRK 633 >gi|24212618|sp|Q9JU21|UVRC_NEIMA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C Length = 617 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 219/617 (35%), Positives = 335/617 (54%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P+ PGVY+ D G+VLYVGKA NL++R+ Y N+H+ RI M+ Q+++I T+ Sbjct: 17 LKNLPKLPGVYRFFDEGGKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 76 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N IK L P++NIL RDDKS+PY++++ H+ P + +R + YF Sbjct: 77 TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 135 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +AV +I LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y + Sbjct: 136 GPYPNSNAVRDSIQILQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 195 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236 V +A FL+G L + M A +E A +RD+ + + I + N Sbjct: 196 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 255 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 + N +D +L + L C+ G++ G +FF T ++ F+ Q Y Sbjct: 256 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 315 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ ++ L+ + ++G +++ GE++ ++ A NA + Q Sbjct: 316 LGKSKPD--IIINNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 373 Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + + Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 374 RRLQQSNQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 433 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ K DD A MR VL RR+ ++ + E N WPD V++DGGK Sbjct: 434 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPDAVLIDGGK 482 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 GQ+ A V ++L + I ++ IAKGP+R AGME+ + GE L P L+ +Q Sbjct: 483 GQIGIAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQT 540 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFAIT HRK+R KA S L +I G+G R++ LL FG ++ + +S E L Sbjct: 541 VRDESHRFAITGHRKKRDKARVTSSLSDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 600 Query: 592 IEGISKKIACKIYNHFH 608 +EGISK +A IY H H Sbjct: 601 VEGISKALAETIYEHLH 617 >gi|56478596|ref|YP_160185.1| excinuclease ABC subunit C [Aromatoleum aromaticum EbN1] gi|81356713|sp|Q5P080|UVRC_AZOSE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|56314639|emb|CAI09284.1| Excinuclease ABC subunit C [Aromatoleum aromaticum EbN1] Length = 602 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 213/608 (35%), Positives = 317/608 (52%), Gaps = 25/608 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PGVY+M+ RVLYVGKA NL++R+ SY + RI M++QI + T T Sbjct: 16 TVPEEPGVYRMIGADERVLYVGKAKNLKRRVSSYFQRTQPSPRIAMMVAQILRVDITPTR 75 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDK++PYI ++ P L HR + T YFGP Sbjct: 76 SEAEALLLENNLIKSLAPRYNILFRDDKTYPYIELSGDE-FPRLAYHRGAFTKGARYFGP 134 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F +V AV ++I+ LQ+TF LR+C + VF++R+RPCLL QIKRC+ PC G I E Y V Sbjct: 135 FPNVWAVRESIHLLQKTFRLRTCENPVFQNRSRPCLLHQIKRCTAPCVGLIDKEAYAADV 194 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 A +FL G + + + M+ A + +E A RD++ L + + Sbjct: 195 RLAARFLEGRASEVIDDLTARMHAAAERLAFEEAAACRDQVRVLQAVLARQFVDSRKDED 254 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D + ++ C+ G++ G F + F+ Q Y + P Sbjct: 255 VDIIAAVEEGSVTCVNIAMVRGGRHLGDRPQFPSATAGIGMLDAALAFIEQHYREHELPA 314 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 +L+ +L + + VP+ ++ + A NA + + Sbjct: 315 KLLVDVPLAPVRVL---MDEICDKPCTLLVPRLQAEKVWMGMAENNARLAIIARARDTGR 371 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 +M L+ + L P+RIE +D SH MG + V VV + ++YR++N+ Sbjct: 372 AEMRLEALRETLDLAEAPRRIECFDISHTMGEATVASCVVSVDGAMKNSEYRRYNI--TG 429 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 + DD A MR VLERR+ ++ E PD++++DGGKGQ+S+A+ Sbjct: 430 ITPGDDFAAMRQVLERRYGKVAAGE--------------GVCPDLILIDGGKGQVSSARS 475 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 VL + +E I ++ +AKG +R G+E G L + P L+ IQ +RDEAHRFA Sbjct: 476 VLADVGLE-SIAMVGVAKGEERKPGLETLVFPDGRMQNLAIDHPALHLIQEIRDEAHRFA 534 Query: 542 ITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 IT HR RR KA S L++I GIGP+R+R LL SFG + + ++ E L + G+S+K A Sbjct: 535 ITGHRARRAKARIGSRLEDIPGIGPMRRRNLLASFGGLDGVRAATVEDLCRVGGVSRKTA 594 Query: 601 CKIYNHFH 608 IYN H Sbjct: 595 EAIYNALH 602 >gi|240013906|ref|ZP_04720819.1| excinuclease ABC subunit C [Neisseria gonorrhoeae DGI18] gi|240121475|ref|ZP_04734437.1| excinuclease ABC subunit C [Neisseria gonorrhoeae PID24-1] gi|240125959|ref|ZP_04738845.1| excinuclease ABC subunit C [Neisseria gonorrhoeae SK-92-679] gi|268684551|ref|ZP_06151413.1| excinuclease ABC subunit C [Neisseria gonorrhoeae SK-92-679] gi|268624835|gb|EEZ57235.1| excinuclease ABC subunit C [Neisseria gonorrhoeae SK-92-679] Length = 628 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 224/617 (36%), Positives = 337/617 (54%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P+ PGVY+ D G VLYVGKA NL++R+ Y N+H+ RI M+ Q+ +I T+ Sbjct: 28 LKNLPKLPGVYRFFDEGGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVRHIETTI 87 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N IK L P++NIL RDDKS+PY++++ H+ P + +R + YF Sbjct: 88 TRSEAEALILENNFIKTLSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKNPNQYF 146 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +AV +I LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y + Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYCD 206 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAAL------SHIQNHND 236 V +A FL+G L + M A +E A +RD++ AL I + N Sbjct: 207 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIIQSDQFIDSKNP 266 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 + N +D +L + L C+ G++ G +FF T ++ F+ Q Y Sbjct: 267 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ ++ L+ + ++G +++ GE++ ++ A NA + TQ Sbjct: 327 LGKSKPD--IIISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAITQ 384 Query: 355 KLSTEISHQMILKDFTKKFALPHI-PKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + + Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 385 RHLQQSNQQHRIDELAKILGMNSDGINRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ K DD A MR VL RR+ ++ + E N WPDVV++DGGK Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKIQEAEANGES---------VKWPDVVLIDGGK 493 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 GQ+ A V ++L + I ++ IAKGP+R AGME+ + GE L P L+ +Q Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGELFRLPPNSPALHLLQT 551 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFAIT HRK+R KA S L +I G+G R++ LL FG ++ + +S E L Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLGDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 611 Query: 592 IEGISKKIACKIYNHFH 608 +EGISK +A IYNH H Sbjct: 612 VEGISKALAETIYNHLH 628 >gi|59801009|ref|YP_207721.1| excinuclease ABC subunit C [Neisseria gonorrhoeae FA 1090] gi|240128470|ref|ZP_04741131.1| excinuclease ABC subunit C [Neisseria gonorrhoeae SK-93-1035] gi|268686861|ref|ZP_06153723.1| excinuclease ABC subunit C [Neisseria gonorrhoeae SK-93-1035] gi|293398872|ref|ZP_06643037.1| excinuclease ABC, C subunit [Neisseria gonorrhoeae F62] gi|59717904|gb|AAW89309.1| putative excinuclease ABC subunit C [Neisseria gonorrhoeae FA 1090] gi|268627145|gb|EEZ59545.1| excinuclease ABC subunit C [Neisseria gonorrhoeae SK-93-1035] gi|291610286|gb|EFF39396.1| excinuclease ABC, C subunit [Neisseria gonorrhoeae F62] Length = 628 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 222/617 (35%), Positives = 336/617 (54%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P+ PGVY+ D G VLYVGKA NL++R+ Y N+H+ RI M+ Q+ +I T+ Sbjct: 28 LKNLPKLPGVYRFFDEGGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVRHIETTI 87 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N IK L P++NIL RDDKS+PY++++ H+ P + +R + YF Sbjct: 88 TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKNPNQYF 146 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +AV +I LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y + Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYCD 206 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236 V +A FL+G L + M A +E A +RD+ + + I + N Sbjct: 207 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIIQSNQFIDSKNP 266 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 + N +D +L + L C+ G++ G +FF T ++ F+ Q Y Sbjct: 267 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ ++ L+ + ++G +++ GE++ ++ A NA + TQ Sbjct: 327 LGKSKPD--IIISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAITQ 384 Query: 355 KLSTEISHQMILKDFTKKFALPHI-PKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + + Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 385 RHLQQSNQQHRIDELAKILGMNSDGINRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ K DD A MR VL RR+ ++ + E N WPDVV++DGGK Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKIQEAEANGES---------VKWPDVVLIDGGK 493 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 GQ+ A V ++L + I ++ IAKGP+R AGME+ + GE L P L+ +Q Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGELFRLPPNSPALHLLQT 551 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFAIT HRK+R KA S L +I G+G R++ LL FG ++ + +S E L Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLGDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 611 Query: 592 IEGISKKIACKIYNHFH 608 +EGISK +A IYNH H Sbjct: 612 VEGISKALAETIYNHLH 628 >gi|329940820|ref|ZP_08290100.1| excinuclease ABC subunit C [Streptomyces griseoaurantiacus M045] gi|329300114|gb|EGG44012.1| excinuclease ABC subunit C [Streptomyces griseoaurantiacus M045] Length = 681 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 193/635 (30%), Positives = 315/635 (49%), Gaps = 32/635 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 Q+P+ PGVY+ D RV+YVGKA +L++R+ +Y N R M++ ++ +TV Sbjct: 13 QIPDSPGVYRFRDEHRRVIYVGKAKSLRQRLANYFQDLANLHPRTRSMVTTAASVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE + IK PRFN+ RDDKS+PY+ +T + P + R YFG Sbjct: 73 STEVEALQLEYSWIKEYDPRFNVKYRDDKSYPYLAVTMNEEFPRVQVMRGHKKKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P+A A+ T++ L R F +R+C+ VF++ RPCLL I +CS PC IS+E + Sbjct: 133 PYAHAWAIRDTVDLLLRVFPVRTCSAGVFKNAARTGRPCLLGYIGKCSAPCVERISAEDH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 E E F++G ++ M +A +YE A RD + AL N + Sbjct: 193 RELAEEFCDFMTGRTGTYIRRLEARMAEAAEDMEYERAARLRDDIGALKKAMEKNAVVLA 252 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D ++ ++ A +Q G+ RG + + T ++ + L+Q Y ++ Sbjct: 253 DATDADLVAVAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEDITTGALVEHALQQLYGEE 312 Query: 298 ---PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P+ +L+ E ++ + G V + VP++G+K+ ++E NA ++ Sbjct: 313 TGDSVPKEVLVPALPEPVEPVQEWLTTRRGAHVSLRVPQRGDKKSLMETVQRNAQQALVL 372 Query: 355 KLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + S L++ + L P RIE YD SH+ G V MVV + K+ Sbjct: 373 HKTKRASDLTTRSRALEEIAEALGLDSAPLRIECYDISHLQGEDVVASMVVFEDGLQRKS 432 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNF---------HPKKQEYSFP 461 +YR+F + + QDD M VL RRF + + ++E + F Sbjct: 433 EYRRFQIRG--FEGQDDVRSMHEVLGRRFRRYLADKEKTGEWSDGEAALTEEDGRPKRFA 490 Query: 462 SWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLN 521 P +V++DGG+ Q++AAQ L +L +++ I + +AK + E + + + +VL Sbjct: 491 YPPQLVVVDGGQPQVAAAQRALDELGIDD-IAVCGLAKRLE-----EVWLPGEDDPVVLP 544 Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYS-PLDEINGIGPLRKRLLLQSFGTVKM 580 LY +QR+RDEAHRFAIT R +R K S PLD++ G+G RK+ L++ FG+VK Sbjct: 545 RTSEGLYLLQRIRDEAHRFAITYQRTKRAKRLRSGPLDDVPGLGETRKQALIKHFGSVKR 604 Query: 581 ISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615 + ++ + + + GI +K A I ++ P Sbjct: 605 LRAATLDQIQEVPGIGRKTAETIAVALARSAPAAP 639 >gi|285018580|ref|YP_003376291.1| excinuclease ABC subunit c protein [Xanthomonas albilineans GPE PC73] gi|283473798|emb|CBA16301.1| putative excinuclease abc subunit c protein [Xanthomonas albilineans] Length = 619 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 228/607 (37%), Positives = 342/607 (56%), Gaps = 17/607 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY+M +LYVGKA L+KR+ SY ++ R M++Q+ + TVT Sbjct: 17 NLSTAPGVYRMYAADDTLLYVGKAGALRKRVSSYFSASPKNARTMTMLAQVARMDVTVTR 76 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE +IK L PR+N+ LRDDKS+PY+L+T + P + HR + G YFGP Sbjct: 77 SEGEALLLENQLIKSLSPRYNVSLRDDKSYPYVLLT-REDWPRIALHRGPRAVPGRYFGP 135 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + V AV +T+N + + F LRSC DSVFR+R+RPCL +QI RCS PC +++++Y E V Sbjct: 136 YPGVTAVRETLNLMHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSAPCVALVAADEYAEAV 195 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242 A FL G + L E++ + M A+ + ++E A RD L+AL +Q + Sbjct: 196 RRAMLFLDGRSDQLGEELVQAMQMASERLEFERAARLRDLLSALRSMQTRQYVDGRAADL 255 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D + AC+ F G+N GT TFF KT+ E + A++L F+ Q+Y + P P Sbjct: 256 DVLACATQGAHACVLLLAFRDGRNLGTRTFFPKTNGEDSAAEVLGAFVSQYYAEHPPPRE 315 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 +LL E + +L+E + K+++ +GE+ +E A NA S +LS+ + Sbjct: 316 VLLDREIADAALIEAALSSAAERKIQLKWNVRGERAGYLELASRNAQASLVSELSSYQAQ 375 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 + + L KR+E +D SH MG + V VV +G V++QYR++N+ + + Sbjct: 376 HARSEALREMLELEEPVKRVECFDISHTMGEATVASCVVFDASGPVRSQYRRYNI--SGI 433 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 + DD A MR +ERRF + ++ E + P PDV+++DGG GQL+ A Sbjct: 434 EPGDDYAAMRQAIERRFRRALEGE----------VKTEPVLPDVLLIDGGAGQLAQASAA 483 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 L L VE + +I +AKG +R AG E + G L P L FIQ++RDEAHRFAI Sbjct: 484 LIALGVEG-VRLIGVAKGVERRAGHETLVMPDGRELRPGAASPALQFIQQVRDEAHRFAI 542 Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR+KA S L++I GIGP R+ LL+ FG + + + +A ++GI+ +A Sbjct: 543 TGHRGRRQKARMTSKLEDIPGIGPRRRASLLKHFGGLAGLKAAGEAEIARVDGINDALAA 602 Query: 602 KIYNHFH 608 +IY + H Sbjct: 603 RIYANLH 609 >gi|308389444|gb|ADO31764.1| excinuclease ABC subunit C [Neisseria meningitidis alpha710] gi|325130436|gb|EGC53200.1| excinuclease ABC, C subunit [Neisseria meningitidis OX99.30304] gi|325136171|gb|EGC58779.1| excinuclease ABC, C subunit [Neisseria meningitidis M0579] gi|325201964|gb|ADY97418.1| excinuclease ABC, C subunit [Neisseria meningitidis M01-240149] gi|325208285|gb|ADZ03737.1| excinuclease ABC, C subunit [Neisseria meningitidis NZ-05/33] Length = 628 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 224/617 (36%), Positives = 337/617 (54%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PGVY+ + +G VLYVGKA NL++R+ Y N+H+ RI M+ Q+++I T+ Sbjct: 28 LKNLPNLPGVYRFFNESGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 87 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N IK L P++NIL RDDKS+PY++++ H+ P + +R + YF Sbjct: 88 TRSESEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 146 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +AV +I LQ+ F LR+C DSVF HR RPCLL+QIKRCS PC G IS E Y + Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCSAPCVGHISEEDYHD 206 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236 V EA FL+G L + M A +E A +RD+ + + I + N Sbjct: 207 SVREASTFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 266 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 + N +D +L + + C+ G++ G +FF T ++ F+ Q Y Sbjct: 267 NNPNDIDLLALAVSDGIVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ I++S +L E + +G +++ GE++ ++ A NA + Q Sbjct: 327 LGKSKPD-IIISNFPMPDALKEALESE-HGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 384 Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + S Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 385 RRLQQSSQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ K DD A MR VL RR+ ++ + E N WPDVV++DGGK Sbjct: 445 RYNITTA--KPGDDYAAMREVLMRRYGKMQEAEANGET---------VKWPDVVLIDGGK 493 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 GQ+ A V ++L + I ++ IAKGP+R AGME+ + GE L P L+ +Q Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQT 551 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFAIT HRK+R KA S L +I G+G R++ LL FG ++ + +S E L Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLSDIPGVGSKRRQALLTRFGGLRGVVAASKEDLEQ 611 Query: 592 IEGISKKIACKIYNHFH 608 +EGISK +A IY H H Sbjct: 612 VEGISKALAETIYEHLH 628 >gi|194098903|ref|YP_002001968.1| excinuclease ABC subunit C [Neisseria gonorrhoeae NCCP11945] gi|240113165|ref|ZP_04727655.1| excinuclease ABC subunit C [Neisseria gonorrhoeae MS11] gi|254493957|ref|ZP_05107128.1| excinuclease ABC subunit C [Neisseria gonorrhoeae 1291] gi|268599244|ref|ZP_06133411.1| excinuclease ABC subunit C [Neisseria gonorrhoeae MS11] gi|193934193|gb|ACF30017.1| excinuclease ABC subunit C [Neisseria gonorrhoeae NCCP11945] gi|226512997|gb|EEH62342.1| excinuclease ABC subunit C [Neisseria gonorrhoeae 1291] gi|268583375|gb|EEZ48051.1| excinuclease ABC subunit C [Neisseria gonorrhoeae MS11] Length = 628 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 224/617 (36%), Positives = 337/617 (54%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P+ PGVY+ D G VLYVGKA NL++R+ Y N+H+ RI M+ Q+ +I T+ Sbjct: 28 LKNLPKLPGVYRFFDEGGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVRHIETTI 87 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N IK L P++NIL RDDKS+PY++++ H+ P + +R + YF Sbjct: 88 TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKNPNQYF 146 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +AV +I LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y + Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYCD 206 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAAL------SHIQNHND 236 V +A FL+G L + M A +E A +RD++ AL I + N Sbjct: 207 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIIQSDQFIDSKNP 266 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 + N +D +L + L C+ G++ G +FF T ++ F+ Q Y Sbjct: 267 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ ++ L+ + ++G +++ GE++ ++ A NA + TQ Sbjct: 327 LGKSKPD--IIISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAITQ 384 Query: 355 KLSTEISHQMILKDFTKKFALPHI-PKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + + Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 385 RHLQQSNQQHRIDELAKILGMNSDGINRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ K DD A MR VL RR+ ++ + E N WPDVV++DGGK Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKIQEAEANGES---------VKWPDVVLIDGGK 493 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 GQ+ A V ++L + I ++ IAKGP+R AGME+ + GE L P L+ +Q Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGELFRLPPNSPALHLLQT 551 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFAIT HRK+R KA S L +I G+G R++ LL FG ++ + +S E L Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLGDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 611 Query: 592 IEGISKKIACKIYNHFH 608 +EGISK +A IYNH H Sbjct: 612 VEGISKALAETIYNHLH 628 >gi|161870201|ref|YP_001599371.1| excinuclease ABC subunit C [Neisseria meningitidis 053442] gi|161595754|gb|ABX73414.1| excinuclease ABC subunit C [Neisseria meningitidis 053442] Length = 628 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 221/617 (35%), Positives = 338/617 (54%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P+ PGVY+ D G+VLYVGKA NL++R+ Y N+H+ RI M+ Q+++I T+ Sbjct: 28 LKNLPKLPGVYRFFDEGGKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 87 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N+IK L P++NIL RDDKS+PY++++ H+ P + +R + YF Sbjct: 88 TRSEAEALILENNLIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 146 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +AV +I LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y + Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 206 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236 V +A FL+G L + M A +E A +RD+ + + I + N Sbjct: 207 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 266 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 + N +D +L + + C+ G++ G +FF T ++ F+ Q Y Sbjct: 267 NNPNDIDLLALAVSDGIVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ ++ L+ + ++G +++ GE++ ++ A NA + Q Sbjct: 327 LGKSKPD--IIINNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 384 Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + S Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 385 RRLQQSSQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ K DD A MR VL RR+ ++ + E N WPDVV++DGGK Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPDVVLIDGGK 493 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 GQ+ A V ++L + I ++ IAKGP+R AGME+ + GE L P L+ +Q Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPHSPALHLLQT 551 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFAIT HRK+R KA S L +I G+G R++ LL FG ++ + +S E L Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLGDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 611 Query: 592 IEGISKKIACKIYNHFH 608 +EGISK +A IYNH H Sbjct: 612 VEGISKALAETIYNHLH 628 >gi|240016347|ref|ZP_04722887.1| excinuclease ABC subunit C [Neisseria gonorrhoeae FA6140] gi|240080467|ref|ZP_04725010.1| excinuclease ABC subunit C [Neisseria gonorrhoeae FA19] gi|240118219|ref|ZP_04732281.1| excinuclease ABC subunit C [Neisseria gonorrhoeae PID1] gi|240123768|ref|ZP_04736724.1| excinuclease ABC subunit C [Neisseria gonorrhoeae PID332] gi|268596604|ref|ZP_06130771.1| excinuclease ABC subunit C [Neisseria gonorrhoeae FA19] gi|268603930|ref|ZP_06138097.1| excinuclease ABC subunit C [Neisseria gonorrhoeae PID1] gi|268682393|ref|ZP_06149255.1| excinuclease ABC subunit C [Neisseria gonorrhoeae PID332] gi|268550392|gb|EEZ45411.1| excinuclease ABC subunit C [Neisseria gonorrhoeae FA19] gi|268588061|gb|EEZ52737.1| excinuclease ABC subunit C [Neisseria gonorrhoeae PID1] gi|268622677|gb|EEZ55077.1| excinuclease ABC subunit C [Neisseria gonorrhoeae PID332] Length = 628 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 222/617 (35%), Positives = 336/617 (54%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P+ PGVY+ D G VLYVGKA NL++R+ Y N+H+ RI M+ Q+ +I T+ Sbjct: 28 LKNLPKLPGVYRFFDEGGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVRHIETTI 87 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N IK L P++NIL RDDKS+PY++++ H+ P + +R + YF Sbjct: 88 TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKNPNQYF 146 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +AV +I LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y + Sbjct: 147 GPYPNSNAVRDSIQVLQKIFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYCD 206 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236 V +A FL+G L + M A +E A +RD+ + + I + N Sbjct: 207 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIIQSNQFIDSKNP 266 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 + N +D +L + L C+ G++ G +FF T ++ F+ Q Y Sbjct: 267 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ ++ L+ + ++G +++ GE++ ++ A NA + TQ Sbjct: 327 LGKSKPD--IIISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAITQ 384 Query: 355 KLSTEISHQMILKDFTKKFALPHI-PKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + + Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 385 RHLQQSNQQHRIDELAKILGMNSDGINRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ K DD A MR VL RR+ ++ + E N WPDVV++DGGK Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKIQEAEANGES---------VKWPDVVLIDGGK 493 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 GQ+ A V ++L + I ++ IAKGP+R AGME+ + GE L P L+ +Q Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGELFRLPPNSPALHLLQT 551 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFAIT HRK+R KA S L +I G+G R++ LL FG ++ + +S E L Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLGDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 611 Query: 592 IEGISKKIACKIYNHFH 608 +EGISK +A IYNH H Sbjct: 612 VEGISKALAETIYNHLH 628 >gi|325204325|gb|ADY99778.1| excinuclease ABC, C subunit [Neisseria meningitidis M01-240355] Length = 628 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 225/617 (36%), Positives = 338/617 (54%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P+ PGVY+ D G+VLYVGKA NL++R+ Y N+H+ RI M+ Q+++I T+ Sbjct: 28 LKNLPKLPGVYRFFDEGGKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 87 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N IK L P++NIL RDDKS+PY++++ H+ P + +R + YF Sbjct: 88 TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 146 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +AV +I LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y + Sbjct: 147 GPYPNSNAVRDSIQILQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 206 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236 V +A FL+G L + M A +E A +RD+ + + I + N Sbjct: 207 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 266 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 + N +D +L + + C+ G++ G +FF T ++ F+ Q Y Sbjct: 267 NNPNDIDLLALAVSDGIVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ I++S +L E + +G +++ GE++ ++ A NA + Q Sbjct: 327 LGKSKPD-IIISNFPMPDALKEALESE-HGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 384 Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + S Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 385 RRLQQSSQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ K DD A MR VL RR+ ++ + E N WPDVV++DGGK Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPDVVLIDGGK 493 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 GQ+ A V ++L + I ++ IAKGP+R AGME+ + GE L P L+ +Q Sbjct: 494 GQIGIAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQT 551 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFAIT HRK+R KA S L EI GIG R++ LL FG ++ + +S E L Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLSEIPGIGSKRRQALLTRFGGLRGVIAASREDLEK 611 Query: 592 IEGISKKIACKIYNHFH 608 +EGISK +A IY H H Sbjct: 612 VEGISKALAETIYEHLH 628 >gi|225175308|ref|ZP_03729303.1| excinuclease ABC, C subunit [Dethiobacter alkaliphilus AHT 1] gi|225169060|gb|EEG77859.1| excinuclease ABC, C subunit [Dethiobacter alkaliphilus AHT 1] Length = 620 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 213/615 (34%), Positives = 325/615 (52%), Gaps = 17/615 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFTVT 63 ++P PGVY M D G+++YVGKA +L++R++SY S + ++ ++ +I ++ +TVT Sbjct: 13 RLPRRPGVYLMKDQRGKIIYVGKAVDLRQRVRSYFQSAQKLSPKVRALVEKIADLDYTVT 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL+LE+N+IK KPR+NI L+DDK +PY+ +T + P ++ R YFG Sbjct: 73 DTEVEALILESNLIKEYKPRYNIDLKDDKHYPYLRVTVQEPFPRIHVARRVEKDGARYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 P+ + AV +TI ++R F LR C RPCL I RC PC GE+ E+Y + Sbjct: 133 PYTNAGAVRETIRLIRRLFPLRHCRGPVDPAKSGRPCLNRHIDRCLAPCDGEVGEEEYRK 192 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--- 239 V E FL G L ++A M +A ++E A RD+ A+ I+ Sbjct: 193 LVDEVLLFLEGKQDRLLHELAARMEEAAQNLEFEKAARLRDQYQAVEAIREKQKIALTEG 252 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK-P 298 D +L ++L C Q G+ G F L + A++L+ FLR++YT Sbjct: 253 GDRDIIALAAGEDLGCAQLFAVRGGKLTGREHFLLTNPTGEDEAEMLAAFLRRYYTHAGE 312 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P ILLS E + +LLE + G +V+I VP++G K+ + AL NA Q++ Sbjct: 313 IPPEILLSGEIPDAALLEEWLRGKRGGRVRIHVPQRGAKKDLARMALDNAAMFLEQEVLR 372 Query: 359 E--ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + Q L+ T+ +L P RIE YD SH+ G V MVV + YR+F Sbjct: 373 QRARDPQAALRALTEALSLEEPPCRIEGYDISHLHGEGTVAAMVVFENGVAKPSDYRRFR 432 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + V DD A MR L RRF++L + P+ E F PD++++DGG GQL Sbjct: 433 VRS--VDKPDDYASMRETLSRRFARLAALRD-AGEPPENMEDPFLLVPDLILIDGGIGQL 489 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 +AA+ +++ N + +IS+AK + F + E L L L +QR+RDE Sbjct: 490 NAARQAMEEAG-YNDVPMISLAKEEEL-----VFVTGRREPLRLPRNSAALQLLQRVRDE 543 Query: 537 AHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 AHRF IT RKRR S L ++ GIG R++ LL+ FG++ + R+S E LA +EG++ Sbjct: 544 AHRFVITYQRKRRPGVRGSLLLDVPGIGEARRKALLKHFGSIAEMRRASVEQLAEVEGMN 603 Query: 597 KKIACKIYNHFHKNT 611 + +A +Y + + Sbjct: 604 EAVAATLYEYLREED 618 >gi|119370544|sp|Q5F928|UVRC_NEIG1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C Length = 617 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 222/617 (35%), Positives = 336/617 (54%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P+ PGVY+ D G VLYVGKA NL++R+ Y N+H+ RI M+ Q+ +I T+ Sbjct: 17 LKNLPKLPGVYRFFDEGGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVRHIETTI 76 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N IK L P++NIL RDDKS+PY++++ H+ P + +R + YF Sbjct: 77 TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKNPNQYF 135 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +AV +I LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y + Sbjct: 136 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYCD 195 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236 V +A FL+G L + M A +E A +RD+ + + I + N Sbjct: 196 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIIQSNQFIDSKNP 255 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 + N +D +L + L C+ G++ G +FF T ++ F+ Q Y Sbjct: 256 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 315 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ ++ L+ + ++G +++ GE++ ++ A NA + TQ Sbjct: 316 LGKSKPD--IIISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAITQ 373 Query: 355 KLSTEISHQMILKDFTKKFALPHI-PKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + + Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 374 RHLQQSNQQHRIDELAKILGMNSDGINRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 433 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ K DD A MR VL RR+ ++ + E N WPDVV++DGGK Sbjct: 434 RYNITTA--KPGDDYAAMREVLTRRYGKIQEAEANGES---------VKWPDVVLIDGGK 482 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 GQ+ A V ++L + I ++ IAKGP+R AGME+ + GE L P L+ +Q Sbjct: 483 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGELFRLPPNSPALHLLQT 540 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFAIT HRK+R KA S L +I G+G R++ LL FG ++ + +S E L Sbjct: 541 VRDESHRFAITGHRKKRDKARVTSSLGDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 600 Query: 592 IEGISKKIACKIYNHFH 608 +EGISK +A IYNH H Sbjct: 601 VEGISKALAETIYNHLH 617 >gi|317164475|gb|ADV08016.1| excinuclease ABC subunit C [Neisseria gonorrhoeae TCDC-NG08107] Length = 628 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 222/617 (35%), Positives = 336/617 (54%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P+ PGVY+ D G VLYVGKA NL++R+ Y N+H+ RI M+ Q+ +I T+ Sbjct: 28 LKNLPKLPGVYRFFDEGGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVRHIETTI 87 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N IK L P++NIL RDDKS+PY++++ H+ P + +R + YF Sbjct: 88 TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKNPNQYF 146 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +AV +I LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y + Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYCD 206 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236 V +A FL+G L + M A +E A +RD+ + + I + N Sbjct: 207 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIIQSNQFIDSKNP 266 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 + N +D +L + L C+ G++ G +FF T ++ F+ Q Y Sbjct: 267 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ ++ L+ + ++G +++ GE++ ++ A NA + TQ Sbjct: 327 LGKSKPD--IIISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAITQ 384 Query: 355 KLSTEISHQMILKDFTKKFALPHI-PKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + + Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 385 RHLQQSNQQHRIDELAKILGMNSDGINRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ K DD A MR VL RR+ ++ + E N WPDVV++DGGK Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKIQEAEANGES---------VKWPDVVLIDGGK 493 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 GQ+ A V ++L + I ++ IAKGP+R AGME+ + GE L P L+ +Q Sbjct: 494 GQIGIAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGELFRLPPNSPALHLLQT 551 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFAIT HRK+R KA S L +I G+G R++ LL FG ++ + +S E L Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLGDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 611 Query: 592 IEGISKKIACKIYNHFH 608 +EGISK +A IYNH H Sbjct: 612 VEGISKALAETIYNHLH 628 >gi|239996121|ref|ZP_04716645.1| excinuclease ABC subunit C [Alteromonas macleodii ATCC 27126] Length = 605 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 207/614 (33%), Positives = 332/614 (54%), Gaps = 25/614 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M + V+YVGKA NL+KR+ SY SN + ++SQI N+ TV Sbjct: 10 LKNLTSQPGVYRMYNSQEEVIYVGKAKNLKKRVSSYFRSNLDNAKTRSLVSQIANMDVTV 69 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +E EA LLE N IK+ KPR+N+++RDDKS+P+I ++ H+ P L HR +G YF Sbjct: 70 VNSETEAFLLENNFIKKYKPRYNVVMRDDKSYPFIFLS-DHEHPRLSFHRGPQKKKGEYF 128 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYM 181 GP+ S +V +++ S+QR F +R C DS +R R+RPCL +Q++RCS PC +S E+Y Sbjct: 129 GPYPSAWSVRESLRSMQRIFPVRQCEDSYYRARSRPCLQYQMQRCSAPCVEGYVSDEEYK 188 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IY 239 E V+ A+ FL G N + + M A+ ++E+A +RD++ AL +Q Sbjct: 189 EQVNFARLFLKGKNQQVIGGLVEKMEAASEALNFEAAARYRDQINALRKVQERQWVAGTQ 248 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--DK 297 + MD F N+ACIQ F GQ G+ +F K + + ++ F QFY +K Sbjct: 249 DEMDVFGFAFKGNMACIQVMFIREGQLLGSKAYFPKVPNTADEQEVFESFFLQFYLAGNK 308 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P+ I+LS + + + G+KV+ + EKRK ++ A NA + + S Sbjct: 309 VIPKQIVLSNTLTDEDAIADVLASEAGHKVQFFKGAREEKRKYLQLAQSNAQTALDAQYS 368 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + S D + +R+E +D SH G V VV G K+ YR++N+ Sbjct: 369 QQKSVFARYLDLEAALEVDTPIQRMECFDISHTSGQQTVASCVVFNREGPHKSDYRRYNI 428 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + DD A M L+RR+ + + ++ PD++++DGGKGQL+ Sbjct: 429 EG--ITPGDDYAAMAQALKRRYKSVKEVQK---------------IPDLLLIDGGKGQLA 471 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRDE 536 A+ + + + ++ +AKG R G+E + + L ++ P L+ IQ +RDE Sbjct: 472 QAEAFFEDWPHDKKPMLLGVAKGTTRKPGLETLILAGSHQVLPMDSHSPGLHLIQHIRDE 531 Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 +HRFAIT HR RR+K S L+ I GIG R++ LL+ G ++ + ++S + ++++ GI Sbjct: 532 SHRFAITGHRNRRQKVKTTSSLESIPGIGAKRRQTLLKFMGGLQGLKKASKDEISNVPGI 591 Query: 596 SKKIACKIYNHFHK 609 S ++A IY+H H+ Sbjct: 592 SPELAETIYDHLHQ 605 >gi|240115922|ref|ZP_04729984.1| excinuclease ABC subunit C [Neisseria gonorrhoeae PID18] gi|268601591|ref|ZP_06135758.1| excinuclease ABC subunit C [Neisseria gonorrhoeae PID18] gi|268585722|gb|EEZ50398.1| excinuclease ABC subunit C [Neisseria gonorrhoeae PID18] Length = 628 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 224/617 (36%), Positives = 337/617 (54%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P+ PGVY+ D G VLYVGKA NL++R+ Y N+H+ RI M+ Q+ +I T+ Sbjct: 28 LKNLPKLPGVYRFFDEGGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVRHIETTI 87 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N IK L P++NIL RDDKS+PY++++ H+ P + +R + YF Sbjct: 88 TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKNPNQYF 146 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +AV +I LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y + Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYCD 206 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAAL------SHIQNHND 236 V +A FL+G L + M A +E A +RD++ AL I + N Sbjct: 207 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIIQSDQFIDSKNP 266 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 + N +D +L + L C+ G++ G +FF T ++ F+ Q Y Sbjct: 267 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ ++ L+ + ++G +++ GE++ ++ A NA + TQ Sbjct: 327 LGKSKPD--IIISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAITQ 384 Query: 355 KLSTEISHQMILKDFTKKFALPHI-PKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + + Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 385 RHLQQSNQQHRIDELAKILGMNSDGINRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ K DD A MR VL RR+ ++ + E N WPDVV++DGGK Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKIQEAEANGES---------VKWPDVVLIDGGK 493 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 GQ+ A V ++L + I ++ IAKGP+R AGME+ + GE L P L+ +Q Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGELFRLPPNSPALHLLQT 551 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFAIT HRK+R KA S L +I G+G R++ LL FG ++ + +S E L Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLGDIPGVGSKRRQALLTRFGGLRGVITASREDLEK 611 Query: 592 IEGISKKIACKIYNHFH 608 +EGISK +A IYNH H Sbjct: 612 VEGISKALAETIYNHLH 628 >gi|294669354|ref|ZP_06734433.1| excinuclease ABC subunit C [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308764|gb|EFE50007.1| excinuclease ABC subunit C [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 659 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 221/617 (35%), Positives = 334/617 (54%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PGVY+ D G VLYVGKA NL++R+ Y N+H+ RI M+ Q+++I T+ Sbjct: 59 LKNLPNLPGVYRFFDEGGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 118 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N IK L P++NIL RDDKS+PY++++ H+ P + +R + YF Sbjct: 119 TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 177 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +AV +I LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y + Sbjct: 178 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 237 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236 V +A FL+G L + M A +E A +RD+ + + I + N Sbjct: 238 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 297 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 + N +D +L + L C+ G++ G +FF T ++ F+ Q Y Sbjct: 298 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 357 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ ++ L+ + ++G +++ GE++ ++ A NA + Q Sbjct: 358 LGKSKPD--IIISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 415 Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + S Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 416 RRLQQSSQQHRIDELAKILNMNSDDLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 475 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ K DD A MR VL RR+ ++ + E N WPDVV++DGGK Sbjct: 476 RYNISTA--KPGDDYAAMREVLTRRYGKMQEAEANGEA---------VKWPDVVLIDGGK 524 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 GQ+ A V ++L + I ++ IAKGP+R AGME+ + GE L P L+ +Q Sbjct: 525 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGETFRLPPNSPALHLLQT 582 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFAIT HRK+R KA S L +I G+G R++ LL FG ++ + +S E L Sbjct: 583 VRDESHRFAITGHRKKRDKARVTSSLSDIPGVGSKRRQALLTRFGGLRGVVAASKEDLEQ 642 Query: 592 IEGISKKIACKIYNHFH 608 +EGISK +A IY H H Sbjct: 643 VEGISKALAETIYEHLH 659 >gi|260440264|ref|ZP_05794080.1| excinuclease ABC subunit C [Neisseria gonorrhoeae DGI2] gi|291043558|ref|ZP_06569274.1| excinuclease ABC subunit C [Neisseria gonorrhoeae DGI2] gi|291012021|gb|EFE04010.1| excinuclease ABC subunit C [Neisseria gonorrhoeae DGI2] Length = 628 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 222/617 (35%), Positives = 336/617 (54%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P+ PGVY+ D G VLYVGKA NL++R+ Y N+H+ RI M+ Q+ +I T+ Sbjct: 28 LKNLPKLPGVYRFFDEVGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVRHIETTI 87 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N IK L P++NIL RDDKS+PY++++ H+ P + +R + YF Sbjct: 88 TRSEAEALILENNFIKTLSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKNPNQYF 146 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +AV +I LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y + Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYCD 206 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236 V +A FL+G L + M A +E A +RD+ + + I + N Sbjct: 207 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIIQSNQFIDSKNP 266 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 + N +D +L + L C+ G++ G +FF T ++ F+ Q Y Sbjct: 267 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ ++ L+ + ++G +++ GE++ ++ A NA + TQ Sbjct: 327 LGKSKPD--IIISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAITQ 384 Query: 355 KLSTEISHQMILKDFTKKFALPHI-PKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + + Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 385 RHLQQSNQQHRIDELAKILGMNSDGINRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ K DD A MR VL RR+ ++ + E N WPDVV++DGGK Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKIQEAEANGES---------VKWPDVVLIDGGK 493 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 GQ+ A V ++L + I ++ IAKGP+R AGME+ + GE L P L+ +Q Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGELFRLPPNSPALHLLQT 551 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFAIT HRK+R KA S L +I G+G R++ LL FG ++ + +S E L Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLGDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 611 Query: 592 IEGISKKIACKIYNHFH 608 +EGISK +A IYNH H Sbjct: 612 VEGISKALAETIYNHLH 628 >gi|298368881|ref|ZP_06980199.1| excinuclease ABC subunit C [Neisseria sp. oral taxon 014 str. F0314] gi|298282884|gb|EFI24371.1| excinuclease ABC subunit C [Neisseria sp. oral taxon 014 str. F0314] Length = 613 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 222/617 (35%), Positives = 336/617 (54%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PGVY+ D G VLYVGKA NL++R+ Y N+H+ RI M+ Q+++I T+ Sbjct: 13 LKNLPNLPGVYRFFDEGGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 72 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N IK L P++NIL RDDKS+PY++++ H+ P + +R + YF Sbjct: 73 TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 131 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +AV +I LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y + Sbjct: 132 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 191 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236 V +A FL+G L + M A +E A +RD+ + + I + N Sbjct: 192 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 251 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 + N +D +L + L C+ G++ G +FF T ++ F+ Q Y Sbjct: 252 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 311 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ I+ + L+ + ++G +++ GE++ ++ A NA + Q Sbjct: 312 LGKSKPDIIISNFTVP--DALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 369 Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + S Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 370 RRLQQSSQQHRIDELAKILNMNSDDLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 429 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ K DD A MR VL RR+ ++ + E N WPDVV++DGGK Sbjct: 430 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPDVVLIDGGK 478 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 GQ+ A V ++L + I ++ IAKGP+R AGME+ + GE L P L+ +Q Sbjct: 479 GQIGIAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGETFRLPPNSPALHLLQT 536 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFAIT HRK+R KA S L +I G+G R++ LL FG ++ + +S E L Sbjct: 537 VRDESHRFAITGHRKKRDKARVTSSLSDIPGVGSKRRQALLTRFGGLRGVVAASKEDLEQ 596 Query: 592 IEGISKKIACKIYNHFH 608 +EGISK +A KIY + H Sbjct: 597 VEGISKALAEKIYEYLH 613 >gi|114331403|ref|YP_747625.1| excinuclease ABC, C subunit [Nitrosomonas eutropha C91] gi|122313779|sp|Q0AG72|UVRC_NITEC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|114308417|gb|ABI59660.1| Excinuclease ABC subunit C [Nitrosomonas eutropha C91] Length = 604 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 232/611 (37%), Positives = 346/611 (56%), Gaps = 27/611 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+ML+ AG V+YVGKA +L+KR+ SY +N + RI M+SQI I TVT Sbjct: 14 TLPSQPGVYRMLNAAGDVIYVGKAIDLRKRVSSYFQKSNLSPRIQLMVSQITGIETTVTR 73 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+L+T+ H P L +R + + YFGP Sbjct: 74 SEAEALLLENNLIKSLAPRYNILFRDDKSYPYLLLTN-HAFPRLAFYRGALDNRHQYFGP 132 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F + V+ +I LQ+ F LR+C +SVF +RTRPCLL QIKRCS PC I+ E Y E V Sbjct: 133 FPNAGVVKSSIQLLQKVFRLRTCENSVFNNRTRPCLLHQIKRCSAPCVNLITPEAYREDV 192 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR--- 241 + A FL G + + I + M +A+ ++ YE A++ RD++ AL IQ +R Sbjct: 193 NSAALFLQGKQDEVLKTIEQKMFEASDRQAYEQAVLFRDQMQALRMIQEKQFVDSSRALD 252 Query: 242 --MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 + + +K+ + G++ G TFF + E + + +L F+ Q Y ++ Sbjct: 253 ADVIACTTGTDKHTVAVNLVMIRSGRHLGDKTFFPQNTHEDSISTVLEAFVSQHYLNRSV 312 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P I+L ++ +LL+ +Q G+KV +T+ GE+RK ++ A NA + QK + Sbjct: 313 PPLIILGKKI-RVTLLQKLLSEQAGHKVTLTINPIGERRKWLDMATENAQLALRQKQIQQ 371 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 S + L+ + LP + RIE +D SH MG + + VV +YR++N+ Sbjct: 372 ASQEDRLQALQEVLNLPGLA-RIECFDISHTMGEATMASCVVYDHYAMRNGEYRRYNI-- 428 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A MR VL+RR++++ E L PD++++DGGKGQ+ A Sbjct: 429 TGITPGDDYAAMRDVLQRRYAKIAMEEGKL--------------PDLILIDGGKGQIGVA 474 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYFIQRLRDEAH 538 V+ +L + N I ++ +AKG R G+E+ + E L L P L+ IQ++RDEAH Sbjct: 475 SEVMIELGL-NDIPLVGVAKGEARKPGLEQLILPWQEETLHLPNDHPALHLIQQIRDEAH 533 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAI HR +R K S L++I GIG R++ LL FG +K + +S E L EG+S+ Sbjct: 534 RFAIQGHRAKRAKTRKTSSLEQIAGIGSKRRQNLLTRFGGLKGVKNASIEELQQTEGVSR 593 Query: 598 KIACKIYNHFH 608 +A KIY Sbjct: 594 ALAEKIYRELR 604 >gi|325128377|gb|EGC51260.1| excinuclease ABC, C subunit [Neisseria meningitidis N1568] Length = 628 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 224/617 (36%), Positives = 338/617 (54%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P+ PGVY+ D G+VLYVGKA NL++R+ Y N+H+ RI M+ Q+ +I T+ Sbjct: 28 LKNLPKLPGVYRFFDEGGKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVRHIETTI 87 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N IK L P++NIL RDDKS+PY++++ H+ P + +R + YF Sbjct: 88 TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 146 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +AV +I LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y + Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 206 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236 V +A FL+G L + M A +E A +RD+ + + I + N Sbjct: 207 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 266 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 + N +D +L + + C+ G++ G +FF T ++ F+ Q Y Sbjct: 267 NNPNDIDLLALAVSDGIVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ I++S +L E + +G +++ GE++ ++ A NA + Q Sbjct: 327 LGKSKPD-IIISNFPMPDALKEALESE-HGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 384 Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + S Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 385 RRLQQSSQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ K DD A MR VL RR+ ++ + E N WPDVV++DGGK Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPDVVLIDGGK 493 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 GQ+ A V ++L + I ++ IAKGP+R AGME+ + GE L P L+ +Q Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPHSPALHLLQT 551 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFAIT HRK+R KA S L +I G+G R++ LL FG ++ + +S E L Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLGDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 611 Query: 592 IEGISKKIACKIYNHFH 608 +EGISK +A IYNH H Sbjct: 612 VEGISKALAETIYNHLH 628 >gi|156933492|ref|YP_001437408.1| excinuclease ABC subunit C [Cronobacter sakazakii ATCC BAA-894] gi|189038051|sp|A7MJG4|UVRC_ENTS8 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|156531746|gb|ABU76572.1| hypothetical protein ESA_01310 [Cronobacter sakazakii ATCC BAA-894] Length = 610 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 216/618 (34%), Positives = 337/618 (54%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D +G V+YVGKA +L+KR+ SY SN + + +++QI+NI TV Sbjct: 11 LKTVTSQPGVYRMYDASGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIHNIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+PYI ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLS-GDTHPRLAIHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEDYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + V + FL+G + + ++ M QA+ +E A RD++ A+ + N Sbjct: 190 QQVEYVRLFLAGKDDQVINQLVSRMEQASQNLAFEEAARLRDQIQAVRRVTEKQFVSNNG 249 Query: 242 M--DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 D + +AC+ F G+ G+ +++ K + + A+++ F+ QFY Sbjct: 250 DDLDVIGVAFESGMACLHVLFIRQGKVLGSRSYYPKVPNGTELAEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL LL + + G +V + +G++ + ++ A NA + T + Sbjct: 310 MRTLPGEILLDFPLTTPELLAETLTEIAGRRVNVQTRPRGDRARYLKLARTNAATALTTR 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L + LP I R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTISQRLTALAQALHLPEIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I+ + PD++++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIEESK---------------VPDIILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L A+ V +L+V ++ ++ +AKG R AG+E F+ +GE L P L+ IQ Sbjct: 472 LGQAKSVFAELDVPWDKHHPLLLGVAKGSDRKAGLETLFLEPEGEGFALPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AIT HRK+R K S L+ I GIGP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHNHAITGHRKKRAKVKNTSTLETIEGIGPKRRQMLLKYMGGLQPLLNASVEEIA 591 Query: 591 SIEGISKKIACKIYNHFH 608 + GIS+ +A KIY Sbjct: 592 KVPGISQALAEKIYYSLK 609 >gi|51891309|ref|YP_074000.1| excinuclease ABC subunit C [Symbiobacterium thermophilum IAM 14863] gi|81389794|sp|Q67T37|UVRC_SYMTH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|51854998|dbj|BAD39156.1| excinuclease ABC subunit C [Symbiobacterium thermophilum IAM 14863] Length = 629 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 205/628 (32%), Positives = 323/628 (51%), Gaps = 39/628 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVTC 64 +P+ PG Y D +GR++YVGKA NL+ R++ Y S+ N T ++ M+ QI I VT Sbjct: 10 LPDRPGCYLFKDASGRIIYVGKARNLKNRVRQYFQSSRNLTAKVLAMVGQIVEIEHIVTD 69 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EAL+LE+N+IK+ KP++NI LRDDK +PY+ +T + P L R YFGP Sbjct: 70 TETEALVLESNLIKKHKPKYNIRLRDDKHYPYLRLTLTEQWPRLVVARSMKKDGSRYFGP 129 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183 + S A+ +T+ +R F LR+C D R CL + I RC GPC +Y E Sbjct: 130 YTSSQAMWETMKLARRLFPLRTCNDP--SRYPRGCLQYHIGRCLGPCLPDFDRHREYAEA 187 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM- 242 V + + FL G + E++ M QA + ++E A RD++ A+ + I + M Sbjct: 188 VRDLQAFLEGRTQEVLERLRARMEQAAERLEFERAAELRDQIRAIEKVTEKQKIIAHTMV 247 Query: 243 --DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-C 299 D + + A +Q F G+ G F + E T +IL+ F++Q Y+ Sbjct: 248 DLDVIAYARLYDEAGVQVFFVRQGKLVGRDQFLMSGADEMTGGEILAAFIQQHYSQTDFV 307 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P+ IL+SE+ + ++ + G +V + PK+GEKR ++E NA + T++ Sbjct: 308 PKEILVSEDLPDADVIAEWLSAKRGSRVALRCPKRGEKRALVEMVAQNAQEAMTERRQQR 367 Query: 360 I----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 + + +L++ LP +P RIE +D SH+ G V MVV K+ YR+F Sbjct: 368 ELELAATEGVLRELQAYLDLPRLPHRIECFDVSHVQGAEVVASMVVFEGGRPKKSDYRRF 427 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIK-------------NEENLNFHPKKQEYSFPS 462 + V +D A M + RRF + + E + + F Sbjct: 428 KMK---VDQNNDFANMAEAVGRRFRRGLAERAAQVEGRVRDLEEGRVAEGGAEYGGKFAD 484 Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA--LVL 520 +PD++I+DGGKGQLS A+ V+++L V+ I +AK + + + L Sbjct: 485 FPDLLIIDGGKGQLSYARAVMRELGVD-HIPTFGLAKENE-------LLCTEDRPDWIEL 536 Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVK 579 L+ +QR+RDEAHRFAIT HRK ++ + +S LD++ GIGP RK+ LLQ FG++K Sbjct: 537 PRGSQALFLLQRIRDEAHRFAITYHRKLHRRASTHSRLDDVPGIGPKRKKALLQHFGSLK 596 Query: 580 MISRSSPETLASIEGISKKIACKIYNHF 607 I +S E +A + GI+ ++A ++ Sbjct: 597 AIREASVEEVAQVPGITLELAERVKEAL 624 >gi|121635037|ref|YP_975282.1| excinuclease ABC subunit C [Neisseria meningitidis FAM18] gi|120866743|emb|CAM10496.1| excinuclease ABC subunit C [Neisseria meningitidis FAM18] gi|325132474|gb|EGC55167.1| excinuclease ABC, C subunit [Neisseria meningitidis M6190] gi|325138248|gb|EGC60817.1| excinuclease ABC, C subunit [Neisseria meningitidis ES14902] Length = 628 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 220/617 (35%), Positives = 335/617 (54%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P+ PGVY+ D G+VLYVGKA NL++R+ Y N+H+ RI M+ Q+ +I T+ Sbjct: 28 LKNLPKLPGVYRFFDEGGKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVRHIETTI 87 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N IK L P++NIL RDDKS+PY++++ H+ P + +R + YF Sbjct: 88 TRSESEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 146 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +AV +I LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y + Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 206 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236 V +A FL+G L + M A +E A +RD+ + + I + N Sbjct: 207 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 266 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 + N +D +L + + C+ G++ G +FF T ++ F+ Q Y Sbjct: 267 NNPNDIDLLALAVSDGIVCVHWVSIRGGRHVGDKSFFPDTKNDPDPNGQDYAEAFVAQHY 326 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ ++ L+ + ++G +++ GE++ ++ A NA + Q Sbjct: 327 LGKSKPD--IIISNFSVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 384 Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + S Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 385 RRLQQSSQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ K DD A MR VL RR+ ++ + E N WPD V++DGGK Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPDAVLIDGGK 493 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 GQ+ A V ++L + I ++ IAKGP+R AGME+ + GE L P L+ +Q Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPHSPALHLLQT 551 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFAIT HRK+R KA S L +I G+G R++ LL FG ++ + +S E L Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLSDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 611 Query: 592 IEGISKKIACKIYNHFH 608 +EGISK +A IYNH H Sbjct: 612 VEGISKALAETIYNHLH 628 >gi|261377538|ref|ZP_05982111.1| excinuclease ABC subunit C [Neisseria cinerea ATCC 14685] gi|269146276|gb|EEZ72694.1| excinuclease ABC subunit C [Neisseria cinerea ATCC 14685] Length = 628 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 220/617 (35%), Positives = 335/617 (54%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PGVY+ D +G VLYVGKA NL++R+ Y N+H+ RI M+ Q+++I T+ Sbjct: 28 LKNLPNLPGVYRFFDESGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 87 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N IK L P++NIL RDDKS+PY++++ H+ P + +R + YF Sbjct: 88 TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 146 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +AV +I LQ+ F LR+C D+VF HR RPCLL+QIKRC+ PC G IS E Y + Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDNVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 206 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236 V +A FL+G L + M A +E A +RD+ + + I + N Sbjct: 207 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 266 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 + N +D +L + L C+ G++ G +FF T ++ F+ Q Y Sbjct: 267 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ ++ L+ + ++G +++ GE++ ++ A NA + Q Sbjct: 327 LGKSKPD--IIISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 384 Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + S Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 385 RRLQQSSQQHRIDELAKILNMNSDDLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ K DD A MR VL RR+ ++ + E N WPDVV++DGGK Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPDVVLIDGGK 493 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 GQ+ A V ++L + I ++ IAKGP+R AGME+ + GE L P L+ +Q Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILSFTGETFRLPPHSPALHLLQT 551 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFAIT HRK+R KA S L +I G+G R++ LL FG ++ + +S E L Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLSDIPGVGSKRRQALLTRFGGLRGVVAASKEDLEQ 611 Query: 592 IEGISKKIACKIYNHFH 608 +EGISK +A IY H H Sbjct: 612 VEGISKALAETIYEHLH 628 >gi|72162420|ref|YP_290077.1| excinuclease ABC subunit C [Thermobifida fusca YX] gi|90111761|sp|Q47NB5|UVRC_THEFY RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|71916152|gb|AAZ56054.1| Excinuclease ABC subunit C [Thermobifida fusca YX] Length = 656 Score = 542 bits (1395), Expect = e-151, Method: Composition-based stats. Identities = 196/645 (30%), Positives = 320/645 (49%), Gaps = 37/645 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 +P PGVY+ D GRV+YVGKA NL+ R+ SY + R MIS ++ + Sbjct: 10 KPGSIPTDPGVYRFRDEHGRVIYVGKAKNLRARLSSYFQDFSALHPRTQTMISTAADVDW 69 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TEVEAL LE + IK PRFN+ RDDKS+PY+ +T + P + R + Sbjct: 70 TVVNTEVEALQLEYSWIKEYSPRFNVRYRDDKSYPYLAVTLNEEFPRVQVMRGARRRGVR 129 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISS 177 YFGP++ A+ T++ L R F +R+C+ VF+ RPCLL I +CS PC G I Sbjct: 130 YFGPYSYAWAIRDTVDLLLRVFPVRTCSAGVFKRARSSGRPCLLGYIDKCSAPCVGRIGV 189 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E+Y + F++G ++ M QA ++YE A RD + AL + Sbjct: 190 EEYRALAEDFCAFMAGETGRFLRQLEAEMKQAAAAQEYERAARIRDDIQALRTVMEKQAV 249 Query: 238 IYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D ++ ++ A +Q + G+ RG + + + + +++ FL Q Y Sbjct: 250 VLGDSTDCDVIAIAEDQLEAAVQVFYVRGGRIRGERGWVVDKVEDVSTGKLVEQFLAQTY 309 Query: 295 TDKP-------CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347 P +L+S E + + K+ G V + VP++G+KR ++E L N Sbjct: 310 GGADDEESTTAIPREVLVSAEPADRDAVVAWLSKRRGAAVDVRVPQRGDKRALMETVLKN 369 Query: 348 AHRSHTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVG 403 A ++ + S S L + + L P RIE +D S + G V MVV Sbjct: 370 AEQTLARHKSQRASDLTTRSKALAEIAEALGLAEAPLRIECFDISTLQGEHTVASMVVFE 429 Query: 404 ENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-----------EENLNFH 452 + K++YR+F++ + D A M V+ RRF++ ++ E Sbjct: 430 DGLARKSEYRRFSIRGAEG-ADSDVAAMYEVISRRFTRYLEESQRVGELDTLGESGAPQG 488 Query: 453 PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV 512 +++ F P++V++DGG+ Q++AAQ L L +E+ + + +AK + E + Sbjct: 489 AERKAPRFAYPPNLVVVDGGRPQVAAAQRALDDLGIED-VAVCGLAKRLE-----EVWLP 542 Query: 513 KKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLL 571 + + ++L LY +QR+RDEAHRFAI+ HR++R KA S LD+I G+GP+R+ L Sbjct: 543 GEEDPIILPRTSEGLYLLQRVRDEAHRFAISYHRRKRAKALTASVLDDIPGLGPVRRAAL 602 Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616 L+ FG+V+ +++++ +A + GI ++ A IY T Sbjct: 603 LKHFGSVRRLAQATAAEIAEVPGIGERTAQTIYERLTSVEGGQRT 647 >gi|329890764|ref|ZP_08269107.1| excinuclease ABC, C subunit [Brevundimonas diminuta ATCC 11568] gi|328846065|gb|EGF95629.1| excinuclease ABC, C subunit [Brevundimonas diminuta ATCC 11568] Length = 632 Score = 542 bits (1395), Expect = e-151, Method: Composition-based stats. Identities = 271/613 (44%), Positives = 382/613 (62%), Gaps = 14/613 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + + P+ PGVY+M G LYVGKA +L+KR+ Y HT RI M+S ++ Sbjct: 30 EARRAPDKPGVYRMYGEDGACLYVGKAKSLKKRVVQYAQGRFHTQRIGLMVSLTRSMELV 89 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT +E EALLLE+N IK+LKPRFN+LLRDDKSF ++I H+ P + KHR + TI G Y Sbjct: 90 VTASETEALLLESNFIKKLKPRFNVLLRDDKSFAELMIRRDHRAPQVRKHRGAHTIPGDY 149 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPFAS AV T+N+LQ+ F LRSC+DSV+ RTRPC+L QIKRCS PCTG IS E+Y Sbjct: 150 FGPFASTWAVNHTLNTLQKAFLLRSCSDSVYETRTRPCMLHQIKRCSAPCTGLISLEEYG 209 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + V EA++FL G + + ++++ M A+ D+E+A RDR+ ALS I N Sbjct: 210 DLVTEAEQFLRGKSRAVIGRLSQEMQAASDDLDFETAARVRDRIRALSAIAMENSVNAEG 269 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F+L+ AC+Q F+ GQN G +F + D ++ +IL+ FL QFY DKP Sbjct: 270 VAEADVFALHAEGGQACVQVFFYRAGQNWGGRAYFPRVDKSDSDPEILAAFLGQFYEDKP 329 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P IL + E LLE +F + ++V+I P++G K +++ ALINA + +KL+ Sbjct: 330 VPRLILSNIRPHELELLEEAFSMKAEHRVEIARPQRGGKASLVDHALINAREALGRKLAE 389 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + IL + + F L P+RIE+YDN+HI G +AVG M+V G GF KNQYRKFN+ Sbjct: 390 NSAQSKILDEVCEAFGLDARPERIEVYDNAHIQGTNAVGGMIVAGPEGFRKNQYRKFNIR 449 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 D+ DD MMR V+ RRF +++K+EE + PD++++DGG GQL+ Sbjct: 450 GEDLTPGDDYGMMREVMRRRFGKMVKDEEAGEAVER---------PDLLLVDGGAGQLAE 500 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 V+ L V++ I ++ +AKGP R AG E FF+ +L ++ P LY+IQRLRDEAH Sbjct: 501 VLAVMADLGVDD-IAVVGVAKGPDRDAGKEHFFMPGKPPFMLPLKSPALYYIQRLRDEAH 559 Query: 539 RFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFA H KRR +PLDEI G+GP RK+ LL +FG+ K +SR+S L ++G+++ Sbjct: 560 RFANGAHAKRRSMDIKKNPLDEIEGVGPGRKKALLHAFGSAKGVSRASVADLVKVDGVNQ 619 Query: 598 KIACKIYNHFHKN 610 +A +I+ FHK+ Sbjct: 620 SLAERIHGFFHKS 632 >gi|254669948|emb|CBA04566.1| putative excinuclease ABC subunit C [Neisseria meningitidis alpha153] Length = 628 Score = 541 bits (1394), Expect = e-151, Method: Composition-based stats. Identities = 223/617 (36%), Positives = 339/617 (54%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P+ PGVY+ D G+VLYVGKA NL++R+ Y N+H+ RI M+ Q+++I T+ Sbjct: 28 LKNLPKLPGVYRFFDEGGKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 87 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N IK L P++NIL RDDKS+PY++++ H+ P + +R + YF Sbjct: 88 TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 146 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +AV +I LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y + Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 206 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236 V EA FL+G L + M A +E A +RD+ + + I + N Sbjct: 207 SVREAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 266 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 + N +D +L + +L C+ G++ G +FF T ++ F+ Q Y Sbjct: 267 NNPNDIDLLALAVSDDLVCVHWVSIRGGRHVGDKSFFPDTKNDPDPNGQDYAEAFVAQHY 326 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ ++ L+ + ++G +++ GE++ ++ A NA + Q Sbjct: 327 LGKSKPD--IIISNFSVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 384 Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + S Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 385 RRLQQSSQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ K DD A MR VL RR+ ++++ E N WPDVV++DGGK Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKMLEAEANGES---------VKWPDVVLIDGGK 493 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 GQ+ A V ++L + I ++ IAKGP+R AGME+ + GE L P L+ +Q Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPHSPALHLLQT 551 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFAIT HRK+R KA S L +I G+G R++ LL FG ++ + +S E L Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLGDIPGVGSKRRQALLTRFGGLRGVVAASKEDLEQ 611 Query: 592 IEGISKKIACKIYNHFH 608 +EGISK +A IYNH H Sbjct: 612 VEGISKALAETIYNHLH 628 >gi|87199082|ref|YP_496339.1| excinuclease ABC subunit C [Novosphingobium aromaticivorans DSM 12444] gi|119367680|sp|Q2G9G8|UVRC_NOVAD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|87134763|gb|ABD25505.1| Excinuclease ABC subunit C [Novosphingobium aromaticivorans DSM 12444] Length = 658 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 249/607 (41%), Positives = 357/607 (58%), Gaps = 17/607 (2%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+MLD G VLYVGKA L+ R+ +Y +R+ M+SQ ++ T +E E Sbjct: 63 KPGVYRMLDARGDVLYVGKARALKNRVANYTQVERLPNRLRRMVSQTRSMTIVTTNSEAE 122 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLEA +IKR +P +N+LLRDDKSFP+IL+ H P + KHR + +G+Y+GPFAS Sbjct: 123 ALLLEAQLIKRFRPPYNVLLRDDKSFPFILLRGDHAFPRISKHRGARKAKGNYYGPFASA 182 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 +V TIN+LQ+ F LRSC D R RPCLL+QI+RCS PC G IS Y E V +AK Sbjct: 183 GSVNTTINALQKLFLLRSCNDGFMARRDRPCLLYQIRRCSAPCVGRISEADYGELVRQAK 242 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNRMDCF 245 FL G + ++ +I M++A D+E A + RDRL A + IQ D F Sbjct: 243 DFLGGKSGAVQREIEAQMHKAAEDLDFERAAMLRDRLRAATFIQGSQAINAEGVGNADVF 302 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILL 305 ++ +Q F GQN G FF + ++++ FL QFY + P IL+ Sbjct: 303 AMATKGGQVAVQAFFIRGGQNWGHRAFFPSHTEGLSEEEVMTSFLAQFYEEVPPARLILV 362 Query: 306 SEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365 E LL + + G KV+I+VP++G++R+++EQA NA + ++++ + + Sbjct: 363 DRALPEADLLAEALCEAAGGKVEISVPQRGDRRRLMEQAQRNAVEALDRRMAESGTKAKV 422 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 +++ + LP +P+RIEIYDNSHI G +A+G MVV G GFVK QYRK+N+ +T Sbjct: 423 MRELAEFLELPEVPQRIEIYDNSHIQGTNALGAMVVAGPEGFVKGQYRKWNIK--LAQTN 480 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD AMMR V+ RRF + + + + +WPD+V++DGGKGQ+SA + L + Sbjct: 481 DDFAMMREVMTRRFGRAQEED---------PDRESGNWPDLVLIDGGKGQMSAVKEALGE 531 Query: 486 LNVENRITIISIAKGPKR-SAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544 L +E+ + +++IAKGP G E F G +L + P+L+ +Q +RDE HRFAI Sbjct: 532 LGIED-VPLVAIAKGPHHGREGREVFHFPDGREKMLPVNSPVLFQLQVMRDEVHRFAIGA 590 Query: 545 HRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 HR +R +A SPLDEI GIGP RKR LL FGT + +S E L G+S +A I Sbjct: 591 HRAKRSRAITASPLDEIPGIGPARKRALLLHFGTAGKVRAASLEDLQRAPGVSAAVAQTI 650 Query: 604 YNHFHKN 610 Y+ +H + Sbjct: 651 YDFYHPS 657 >gi|83589125|ref|YP_429134.1| excinuclease ABC subunit C [Moorella thermoacetica ATCC 39073] gi|119367672|sp|Q2RLU8|UVRC_MOOTA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|83572039|gb|ABC18591.1| Excinuclease ABC subunit C [Moorella thermoacetica ATCC 39073] Length = 613 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 197/622 (31%), Positives = 319/622 (51%), Gaps = 30/622 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P+ PGVY M D G ++YVGKA +L+ R++SY + R M+S + + + +T Sbjct: 9 RLPDHPGVYIMHDANGAIIYVGKAASLRNRVRSYFRGQHQ-PRTQAMVSHVADFEYILTD 67 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 EVEAL+LE N+IK+ +PR+N+ L+DDKS+PYI IT + P + R + YFGP Sbjct: 68 NEVEALILECNLIKQHRPRYNVSLKDDKSYPYIKITTQEDFPRIQITRSVTRDGSRYFGP 127 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + S ++++T+ L+ F +R+C D+ + R+RPCL I RC PC G++ E Y E V Sbjct: 128 YTSAGSLKETLKLLRGLFPIRTCRDTPLQPRSRPCLNAHIGRCLAPCAGQVDRETYREAV 187 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND---SIYNR 241 FL G + L +++ M A + ++E A RD+L A+ + + Sbjct: 188 DNVIMFLEGRHTALVKELKEQMEAAAARLEFEKAARLRDQLRAVQEVCEKQKLAAASGED 247 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DKPCP 300 D + A F G+ G FFL + ++++ L+++Y+ P Sbjct: 248 ADAIAFAREGEAALGLIFFSRGGKVIGRDHFFLTGSEGLSRGEVMAALLKEYYSRGVEIP 307 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKL 356 ILL +E E+ + + + G +V + VPK+G K K++ NA + Sbjct: 308 PEILLHDEPEDAATIASWLSRLRGGRVNLRVPKRGTKLKLLRLVHENAVSLLQEHLLTRR 367 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 E + L + + LP +P+R+E YD S+ G S VG M V + + + YR+F Sbjct: 368 RQEEGSRAALLELQEILELPRLPRRMEAYDISNFQGSSQVGAMAVFVDGRPLPSAYRRFQ 427 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + V+ +D A ++ VL RRF + + + F PD V++DGG GQL Sbjct: 428 IKT--VRGPNDFASLQEVLSRRFRRAAEQD-----------PHFADLPDFVLIDGGLGQL 474 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 AA+ ++ + V I +AK + F V E + L L +Q LRDE Sbjct: 475 HAARETMEAMGV-GYIPTFGLAKEEEL-----LFRVGTSEPIRLPRESKALQILQHLRDE 528 Query: 537 AHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 HRFAIT HR++R+K A S LD+I G+GP RK+ LL+ FG+V IS+++ E L ++EG+ Sbjct: 529 VHRFAITYHRQKREKTAYRSVLDDIPGVGPKRKKALLRHFGSVAAISKATLEDLLAVEGM 588 Query: 596 SKKIACKIYNHF-HKNTSHTPT 616 ++ +A +I ++ T Sbjct: 589 NRTVAARILAGLGRRSDGEDST 610 >gi|74316719|ref|YP_314459.1| excinuclease ABC subunit C [Thiobacillus denitrificans ATCC 25259] gi|119367858|sp|Q3SKW8|UVRC_THIDA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|74056214|gb|AAZ96654.1| Excinuclease ABC, C subunit [Thiobacillus denitrificans ATCC 25259] Length = 598 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 225/609 (36%), Positives = 329/609 (54%), Gaps = 25/609 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+M+D AG VLYVGKA +L+KR+ SY + + RI M+ +++I TVT Sbjct: 10 SLPTLPGVYRMVDAAGAVLYVGKAKDLRKRVGSYFLKTDQSPRIRLMLKSVDHIDTTVTR 69 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLE N+IK LKPRFNIL RDDKS+PY+L+T H P L R + + FGP Sbjct: 70 TEAEALLLENNLIKGLKPRFNILFRDDKSYPYLLLT-GHGYPRLAYFRGAPKKRDQAFGP 128 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + + AV ++I LQ+ F LR+C D+VF +R+RPCLL QIKRCS PC +S+E Y V Sbjct: 129 YPNSYAVRESIQLLQKVFQLRTCEDTVFGNRSRPCLLHQIKRCSAPCVSLVSAETYARDV 188 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---- 240 EA L G L E+I MN A D+E+A RDRL L+ ++ Sbjct: 189 AEAMLLLKGEATALTEEITAQMNAAAENLDFETAAYLRDRLRMLATVREKQFVDTTGSEA 248 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D ++ + + G++ G +FF + + + L F+ Q Y D P P Sbjct: 249 DADVVAVAEVGGVIAVNLTMIRGGRHLGDRSFFPQHGEGAALGEALEAFVAQHYLDHPIP 308 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 IL+SE + +L + +Q G KV + GE+R I A NA S ++ + Sbjct: 309 ARILVSEAIDSAALQTL-LSEQAGKKVTLQHRVTGERRVWIAMAQANARLSAERRSADRA 367 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 + L LP + RIE +D SH MG + + VV + K+ YR++N+ Sbjct: 368 NQSQRLAALRDTLELPTLN-RIECFDISHTMGEATIASCVVYEGDDLKKSDYRRYNIEG- 425 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 + DD A M L +RF + ++ PD++++DGGKGQ++ A Sbjct: 426 -ITPGDDYAAMHAALIKRFHRTVEEN--------------GVLPDLLLIDGGKGQVAMAV 470 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 L +L +++ + ++ +AKG R G+E G L L P + IQ++RDEAHRF Sbjct: 471 EALAELGIDD-VLLLGVAKGESRKPGLETLIFADGRELKLARDHPGFHLIQQVRDEAHRF 529 Query: 541 AITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AIT HR +R KA S L++I GIGP R++ LL+ FG ++ + + + LAS+ GIS+++ Sbjct: 530 AITGHRAKRGKARVQSTLEDIAGIGPKRRKQLLEHFGGLQGVRNAGVDALASVNGISREL 589 Query: 600 ACKIYNHFH 608 A IYN H Sbjct: 590 AEIIYNALH 598 >gi|239999187|ref|ZP_04719111.1| excinuclease ABC subunit C [Neisseria gonorrhoeae 35/02] gi|268595016|ref|ZP_06129183.1| excinuclease ABC subunit C [Neisseria gonorrhoeae 35/02] gi|268548405|gb|EEZ43823.1| excinuclease ABC subunit C [Neisseria gonorrhoeae 35/02] Length = 628 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 221/617 (35%), Positives = 335/617 (54%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P+ PGVY+ D G VLYVGKA NL++R+ Y N+H+ RI M+ Q+ +I T+ Sbjct: 28 LKNLPKLPGVYRFFDEGGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVRHIETTI 87 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N IK L P++NIL DDKS+PY++++ H+ P + +R + YF Sbjct: 88 TRSEAEALILENNFIKALSPKYNILFCDDKSYPYLMLS-GHQYPQMAYYRGTLKNPNQYF 146 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +AV +I LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y + Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYCD 206 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236 V +A FL+G L + M A +E A +RD+ + + I + N Sbjct: 207 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIIQSNQFIDSKNP 266 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 + N +D +L + L C+ G++ G +FF T ++ F+ Q Y Sbjct: 267 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ ++ L+ + ++G +++ GE++ ++ A NA + TQ Sbjct: 327 LGKSKPD--IIISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAITQ 384 Query: 355 KLSTEISHQMILKDFTKKFALPHI-PKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + + Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 385 RHLQQSNQQHRIDELAKILGMNSDGINRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ K DD A MR VL RR+ ++ + E N WPDVV++DGGK Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKIQEAEANGES---------VKWPDVVLIDGGK 493 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 GQ+ A V ++L + I ++ IAKGP+R AGME+ + GE L P L+ +Q Sbjct: 494 GQIGIAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGELFRLPPNSPALHLLQT 551 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFAIT HRK+R KA S L +I G+G R++ LL FG ++ + +S E L Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLGDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 611 Query: 592 IEGISKKIACKIYNHFH 608 +EGISK +A IYNH H Sbjct: 612 VEGISKALAETIYNHLH 628 >gi|258545961|ref|ZP_05706195.1| excinuclease ABC subunit C [Cardiobacterium hominis ATCC 15826] gi|258518839|gb|EEV87698.1| excinuclease ABC subunit C [Cardiobacterium hominis ATCC 15826] Length = 607 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 216/606 (35%), Positives = 326/606 (53%), Gaps = 23/606 (3%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 PGVYQM D G+VLYVGKA NL+ R+ SY + + + ++ Q+ +I T+T TE Sbjct: 20 TLPGVYQMRDAEGKVLYVGKAKNLRNRLSSYFRDSGMSAKTRALMRQVVDIDTTITHTET 79 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EAL+LE N+IK P+FNILLRDDKS+PYI+++ H P L HR + QG +FGPF + Sbjct: 80 EALILENNLIKAHLPKFNILLRDDKSYPYIVLS-AHAFPRLSLHRGARK-QGEFFGPFPN 137 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 V A ++ L + F +R C DS F R+RPCL +QI+RC PC G I + Y E V Sbjct: 138 VQAARYSLEVLAKVFRVRQCEDSFFAARSRPCLQYQIERCYAPCVGFIDEKAYAETVAHT 197 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCF-- 245 + FL+G + L +++ M A YE A + RD+L L I + D Sbjct: 198 RDFLNGRSEVLLQELTAKMEVAAEARAYEQAALLRDQLVQLRKITEKQHMVAGEADADVL 257 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILL 305 ++ AC+Q F+ G + + FF + E+ A++L+ F+ QFY ++ P +++ Sbjct: 258 AVATAYGEACVQVLFYRDGHSVSSQAFFPRLPEETPEAEVLAAFITQFYHERNVPPQLVI 317 Query: 306 SEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365 S E + ++ G KV + + +RK +E A NA S +LS +++ Q Sbjct: 318 SHALEGGETIAAWLGEKSGRKVSLNAKPREARRKWLELAEENARLSLGLRLSGKLTMQQR 377 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 + FA P +P+R+E D SH G + V VV G +K+ YR++N+ V Sbjct: 378 FAALAEAFAWPDVPERLECIDISHTQGEATVASCVVFDRRGALKSDYRRYNIRE--VTAG 435 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD A +R + RRF ++ K E PDV+ +DGGKGQL A V + Sbjct: 436 DDYAAIRQTVSRRFERIQKGE--------------GVLPDVLFIDGGKGQLRQAVEVFNE 481 Query: 486 LNVENRITIISIAKGPKRSAGMEKF-FVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544 L++ + ++ +AKG R AG+E+F F + L + I ++RDEAHRFAIT Sbjct: 482 LSISG-VHLVGVAKGQGRKAGLEQFWFPHEDAPRYLPSDSQAMQLIVQIRDEAHRFAITG 540 Query: 545 HRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 HR R K + S L++I G+G R++ LL+ FG + I R+ E LA + G+S+ +A +I Sbjct: 541 HRAGRAKNSKRSLLEQIPGVGAKRRQALLKYFGGLAQIRRAGVEDLAKVPGVSETLAKEI 600 Query: 604 YNHFHK 609 Y H+ Sbjct: 601 YAVLHE 606 >gi|261392394|emb|CAX49936.1| UvrABC system protein C (UvrC protein; excinuclease ABC subunit C) [Neisseria meningitidis 8013] Length = 617 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 220/617 (35%), Positives = 335/617 (54%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P+ PGVY+ D G+VLYVGKA NL++R+ Y N+H+ RI M+ Q+ +I T+ Sbjct: 17 LKNLPKLPGVYRFFDEGGKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVRHIETTI 76 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N IK L P++NIL RDDKS+PY++++ H+ P + +R + YF Sbjct: 77 TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 135 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +AV +I LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y + Sbjct: 136 GPYPNSNAVRDSIQILQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 195 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236 V +A FL+G L + M A +E A +RD+ + + I + N Sbjct: 196 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 255 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 + N +D +L + + C+ G++ G +FF T ++ F+ Q Y Sbjct: 256 NNPNDIDLLALAVSDGIVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 315 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ ++ L+ + ++G +++ GE++ ++ A NA + Q Sbjct: 316 LGKSKPD--IIINNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 373 Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + S Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 374 RRLQQSSQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 433 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ K DD A MR VL RR+ ++ + E N WPD V++DGGK Sbjct: 434 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPDAVLIDGGK 482 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 GQ+ A V ++L + I ++ IAKGP+R AGME+ + GE L P L+ +Q Sbjct: 483 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPHSPALHLLQT 540 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFAIT HRK+R KA S L +I G+G R++ LL FG ++ + +S E L Sbjct: 541 VRDESHRFAITGHRKKRDKARVTSSLGDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 600 Query: 592 IEGISKKIACKIYNHFH 608 +EGISK +A IYNH H Sbjct: 601 VEGISKALAETIYNHLH 617 >gi|318075147|ref|ZP_07982479.1| excinuclease ABC subunit C [Streptomyces sp. SA3_actF] Length = 790 Score = 540 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 192/641 (29%), Positives = 315/641 (49%), Gaps = 38/641 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 Q+P+ PGVY+ D RV+YVGKA +L++R+ +Y + R M++ ++ +TV Sbjct: 13 QIPDSPGVYRFRDEHRRVIYVGKAKSLRQRLANYFQDLAHLHPRTRTMVTTAASVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE + IK PRFN+ RDDKS+PY+ +T + P R + YFG Sbjct: 73 STEVEALQLEYSWIKEYDPRFNVKYRDDKSYPYLAVTMNEEFPRAQVMRGAKRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P+ A+ T++ L R F +R+C+ VF++ RPCLL I +CS PC G IS E + Sbjct: 133 PYGHAWAIRDTVDLLLRVFPVRTCSAGVFKNAARTGRPCLLGYIDKCSAPCVGRISPEDH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + + F++G + ++ M +A YE A RD + AL+ + + Sbjct: 193 RDLAEDFCHFMAGHTGHYLRRLEERMTEAAEDMAYERAARLRDDIGALTRAMEKSAVVLA 252 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D +L ++ A +Q G+ RG + T A ++ + L+Q Y ++ Sbjct: 253 DATDADLIALAQDELEAAVQIFHVRGGRVRGQRGWVTDKVEAVTTADLVEHALQQLYGEE 312 Query: 298 ---PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P+ +L+ E ++ ++ G +V + VP++G+KR ++E NA +S Sbjct: 313 RGDAVPKEVLVPALPEPVQPVQEWLSERRGAQVSLRVPQRGDKRALMETVERNAQQSLAL 372 Query: 355 KLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + S L++ L +P RIE YD SH+ G V MVV + K+ Sbjct: 373 HKTKRASDLTTRSRALEEIAAALDLDGVPLRIECYDISHLQGDDVVASMVVFEDGLARKS 432 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNE---------------ENLNFHPKK 455 +YR+F + + QDD M V+ RRF + + E Sbjct: 433 EYRRFQIKG--FQGQDDVRSMHEVITRRFRRYLAERERTGEWTEEELDGPVEPGGLDEDG 490 Query: 456 QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG 515 + F P ++++DGG+ Q++AA+ L +L +++ + + +AK + E + + Sbjct: 491 RPKRFAYPPQLLVVDGGQPQVAAARRALDELGIDD-VAVCGLAKRLE-----EVWVPGEE 544 Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQS 574 + +VL LY +QR+RDEAHRFAIT R +R K PLDE+ G+G RK+ LL+ Sbjct: 545 DPVVLPRSSEGLYLLQRVRDEAHRFAITYQRSKRAKRFRAGPLDEVPGLGQARKQALLKH 604 Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615 FG+VK + ++ E + + GI +K A I F ++ P Sbjct: 605 FGSVKKLRAATIEQICEVPGIGRKTAETILATFARSEPGAP 645 >gi|217977613|ref|YP_002361760.1| excinuclease ABC, C subunit [Methylocella silvestris BL2] gi|217502989|gb|ACK50398.1| excinuclease ABC, C subunit [Methylocella silvestris BL2] Length = 679 Score = 540 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 284/611 (46%), Positives = 383/611 (62%), Gaps = 7/611 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q P+ PGVY+M+ G VLYVGKA +++KRI SYM H +RI MI+ ++ F T Sbjct: 67 QAPQGPGVYRMIAADGEVLYVGKAKSVRKRIASYMRPLGHNNRIARMIALTASMVFISTS 126 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLE N IK++KPRFN+L+RDDKSFPYIL+T H P + KHR + +G YFGP Sbjct: 127 TETEALLLETNYIKQMKPRFNVLMRDDKSFPYILLTGDHAAPQILKHRGARNRKGDYFGP 186 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 FASV AV +T+N+L+R F LRSC+DS + +RTRPCLL QIKRCS PCTGEI + Y V Sbjct: 187 FASVWAVNRTMNALERAFLLRSCSDSYYENRTRPCLLHQIKRCSAPCTGEIDLDDYRRLV 246 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241 EA+ FLSG + +++ +A M A+ ++E A RDR+AALS IQ Sbjct: 247 GEARDFLSGKSRAVRDLLATEMTSASDALEFERAARLRDRIAALSAIQGAQGVNPKTVEE 306 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D F++ C++ FF QN G +F + D +A++L FL QFY DKP P Sbjct: 307 ADVFAIVEEAGQFCVEAFFFRTYQNWGNRAYFPRADKSLASAEVLDAFLAQFYADKPAPR 366 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 ILLS E E ++L + + G++++I P++GEK +++E A NA + +++LS S Sbjct: 367 LILLSHEIENGAVLSEALSLRTGHRIEIARPQRGEKHELVEHACQNAREAMSRRLSETAS 426 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 + +L L +R+EIYDNSHIMG +AVG MVV G GF+K YR FN+ D Sbjct: 427 QEKLLAALAAALGLSAPLRRVEIYDNSHIMGTNAVGAMVVAGPAGFMKAHYRTFNIKGED 486 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS--FPSWPDVVILDGGKGQLSAA 479 + DD MMR VL RRF +L K+E + + + FP PD++++DGG+GQ AA Sbjct: 487 LTPGDDYGMMREVLRRRFLRLAKDEAAADGPSTRDDDEDIFPQRPDLILIDGGQGQFDAA 546 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 +L +L+V + + IAKG R+AG E FFV L+ RDP LYF+QRLRDEAHR Sbjct: 547 NAILDELSVTG-VAVAGIAKGVDRNAGRESFFVAGKAPFRLSPRDPALYFVQRLRDEAHR 605 Query: 540 FAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAI THR RRKK SPLDEI G+GP RKR LL +FGT K IS+++ L + G++ Sbjct: 606 FAIGTHRARRKKEFTRSPLDEIAGVGPARKRALLHAFGTAKAISKAALSDLEKVAGVNAA 665 Query: 599 IACKIYNHFHK 609 A +YN+FH+ Sbjct: 666 TARLVYNYFHE 676 >gi|16127113|ref|NP_421677.1| excinuclease ABC subunit C [Caulobacter crescentus CB15] gi|221235911|ref|YP_002518348.1| excinuclease ABC subunit C [Caulobacter crescentus NA1000] gi|81534644|sp|Q9A4F3|UVRC_CAUCR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|13424497|gb|AAK24845.1| excinuclease ABC, subunit C [Caulobacter crescentus CB15] gi|220965084|gb|ACL96440.1| excinuclease ABC subunit C [Caulobacter crescentus NA1000] Length = 640 Score = 540 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 266/618 (43%), Positives = 381/618 (61%), Gaps = 23/618 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P+ PGVY+M+ A VLYVGKA +L+KR+ Y HT+RI +M+ + F T Sbjct: 32 RLPDAPGVYRMIGEADEVLYVGKAKSLKKRVVQYAQGRFHTNRIANMVDATRAMEFITTR 91 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE N+IK+LKPRFN+LLRDDKSFP I+I H P L KHR + TI+G YFGP Sbjct: 92 TEADALLLEINLIKQLKPRFNVLLRDDKSFPEIVIRRDHDAPQLRKHRGAHTIKGDYFGP 151 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 FAS AV +T+N+LQ+ F LRSC+DSV+ R RPC+L+QIKRC+ PCTG I + Y V Sbjct: 152 FASAWAVNRTLNTLQKAFLLRSCSDSVYDSRDRPCMLYQIKRCAAPCTGLIGKDDYQALV 211 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241 +A+ FL G + + +A+ M +A + ++E A RDR+ ALS + Sbjct: 212 DQAEAFLRGKSRAVMATMAKAMEEAAEELEFERAARLRDRIRALSAVAQETQINPETVEE 271 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQI---------LSYFLRQ 292 D +L+ AC+Q FF GQN G +F + + + + ++ FL Q Sbjct: 272 ADVVALHVEGGQACVQVFFFRAGQNWGNRAYFPRITGAADDPEDETVTEEQRIITAFLGQ 331 Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 FY DKP P IL + + E+ LL +F + G KV+I VPK+GEK +++ L NA + Sbjct: 332 FYDDKPIPRLILANVQPAESELLSEAFALKSGRKVEIAVPKRGEKADLVQHVLTNAREAL 391 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 +K++ + +L + F L P+RIE+YDNSHI G +AVG M+V G GF+K QY Sbjct: 392 GRKMAEGSAQTKLLAGVAEAFKLDAPPERIEVYDNSHIQGANAVGGMIVAGPEGFMKGQY 451 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472 RKFN+ ++ DD MM+ VL RRF++L+K EE + + PD+V++DGG Sbjct: 452 RKFNIKSTELTPGDDYGMMKEVLRRRFARLVKEEEEGDDANR---------PDLVLVDGG 502 Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532 +GQL AA ++ L V++ I ++ +AKGP R AG+E+FF+ +L + P+LY++QR Sbjct: 503 QGQLDAAIEIMADLGVDD-IAVVGVAKGPDRDAGLERFFIPGQTPFMLEPKSPVLYYLQR 561 Query: 533 LRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 LRDEAHRFAI HR RR +PLDEI G+GP RK+ LL +FG+ K + R+S E L Sbjct: 562 LRDEAHRFAIGAHRTRRSMDLKKNPLDEIEGVGPGRKKALLHAFGSAKGVGRASVEDLVK 621 Query: 592 IEGISKKIACKIYNHFHK 609 ++G+S+ +A +I+ F K Sbjct: 622 VDGVSQALAERIFGFFRK 639 >gi|318056352|ref|ZP_07975075.1| excinuclease ABC subunit C [Streptomyces sp. SA3_actG] Length = 930 Score = 540 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 192/641 (29%), Positives = 315/641 (49%), Gaps = 38/641 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 Q+P+ PGVY+ D RV+YVGKA +L++R+ +Y + R M++ ++ +TV Sbjct: 13 QIPDSPGVYRFRDEHRRVIYVGKAKSLRQRLANYFQDLAHLHPRTRTMVTTAASVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE + IK PRFN+ RDDKS+PY+ +T + P R + YFG Sbjct: 73 STEVEALQLEYSWIKEYDPRFNVKYRDDKSYPYLAVTMNEEFPRAQVMRGAKRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P+ A+ T++ L R F +R+C+ VF++ RPCLL I +CS PC G IS E + Sbjct: 133 PYGHAWAIRDTVDLLLRVFPVRTCSAGVFKNAARTGRPCLLGYIDKCSAPCVGRISPEDH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + + F++G + ++ M +A YE A RD + AL+ + + Sbjct: 193 RDLAEDFCHFMAGHTGHYLRRLEERMTEAAEDMAYERAARLRDDIGALTRAMEKSAVVLA 252 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D +L ++ A +Q G+ RG + T A ++ + L+Q Y ++ Sbjct: 253 DATDADLIALAQDELEAAVQIFHVRGGRVRGQRGWVTDKVEAVTTADLVEHALQQLYGEE 312 Query: 298 ---PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P+ +L+ E ++ ++ G +V + VP++G+KR ++E NA +S Sbjct: 313 RGDAVPKEVLVPALPEPVQPVQEWLSERRGAQVSLRVPQRGDKRALMETVERNAQQSLAL 372 Query: 355 KLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + S L++ L +P RIE YD SH+ G V MVV + K+ Sbjct: 373 HKTKRASDLTTRSRALEEIAAALDLDGVPLRIECYDISHLQGDDVVASMVVFEDGLARKS 432 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNE---------------ENLNFHPKK 455 +YR+F + + QDD M V+ RRF + + E Sbjct: 433 EYRRFQIKG--FQGQDDVRSMHEVITRRFRRYLAERERTGEWTEEELDGPVEPGGLDEDG 490 Query: 456 QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG 515 + F P ++++DGG+ Q++AA+ L +L +++ + + +AK + E + + Sbjct: 491 RPKRFAYPPQLLVVDGGQPQVAAARRALDELGIDD-VAVCGLAKRLE-----EVWVPGEE 544 Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQS 574 + +VL LY +QR+RDEAHRFAIT R +R K PLDE+ G+G RK+ LL+ Sbjct: 545 DPVVLPRSSEGLYLLQRVRDEAHRFAITYQRSKRAKRFRAGPLDEVPGLGQARKQALLKH 604 Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615 FG+VK + ++ E + + GI +K A I F ++ P Sbjct: 605 FGSVKKLRAATIEQICEVPGIGRKTAETILATFARSEPGAP 645 >gi|316984129|gb|EFV63107.1| excinuclease ABC, C subunit [Neisseria meningitidis H44/76] gi|325134434|gb|EGC57079.1| excinuclease ABC, C subunit [Neisseria meningitidis M13399] gi|325140450|gb|EGC62971.1| excinuclease ABC, C subunit [Neisseria meningitidis CU385] gi|325200049|gb|ADY95504.1| excinuclease ABC, C subunit [Neisseria meningitidis H44/76] gi|325205902|gb|ADZ01355.1| excinuclease ABC, C subunit [Neisseria meningitidis M04-240196] Length = 628 Score = 540 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 221/617 (35%), Positives = 335/617 (54%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PGVY+ + +G VLYVGKA NL++R+ Y N+H+ RI M+ Q+++I T+ Sbjct: 28 LKNLPNLPGVYRFFNESGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 87 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N IK L P++NIL RDDKS+PY++++ H+ P + +R + YF Sbjct: 88 TRSESEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 146 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +AV +I LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y + Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 206 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236 V EA FL+G L + M A +E A +RD+ + + I + N Sbjct: 207 SVREAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 266 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 + N +D +L + L C+ G++ G +FF T ++ F+ Q Y Sbjct: 267 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ ++ L+ + ++G +++ GE++ ++ A NA + Q Sbjct: 327 LGKSKPD--IIISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVRLKMAEQNAQMAIAQ 384 Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + S Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 385 RRLQQSSQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ K DD A MR VL RR+ ++ + E N WPD V++DGGK Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPDAVLIDGGK 493 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 GQ+ A V ++L + I ++ IAKGP+R AGME+ + GE L P L+ +Q Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQT 551 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFAIT HRK+R KA S L +I G+G R++ LL FG ++ + +S E L Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLSDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 611 Query: 592 IEGISKKIACKIYNHFH 608 +EGISK +A IYNH H Sbjct: 612 VEGISKALAETIYNHLH 628 >gi|240171790|ref|ZP_04750449.1| excinuclease ABC subunit C [Mycobacterium kansasii ATCC 12478] Length = 647 Score = 540 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 191/639 (29%), Positives = 310/639 (48%), Gaps = 35/639 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA +L+ R+ SY + R M++ + +TV Sbjct: 13 SIPVEPGVYRFRDAHGRVIYVGKAKSLRSRLTSYFADVAHLHPRTRQMVTTAAKVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE N IK PRFN+ RDDKS+P + +T + P L +R YFG Sbjct: 73 NTEVEALQLEYNWIKEFDPRFNVRYRDDKSYPALAVTLNEEFPRLMVYRGPRRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRT---RPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F R+C+ VF+ RPCLL I +CS PC G +S+E++ Sbjct: 133 PYSHAWAIRETLDLLTRVFPARTCSTGVFKRHKQIERPCLLGYIDKCSAPCVGRVSAEQH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + V + FLSG ++ R+M+ A + D+E A RD L+AL + Sbjct: 193 RQIVEDFCDFLSGQTDRYARELERHMSAAAEQLDFERAARLRDDLSALKRAMEKQAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLK---TDSESTNAQILSYFLRQFY 294 D + ++ A +Q G+ RG + ++ +S Q++ FL QFY Sbjct: 253 DGTDADVMAFADDELEAAVQVFHVRGGRVRGQRGWIVEKSGDPGDSGEEQLVEQFLTQFY 312 Query: 295 TD------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIE 342 + P P +L+ + L G +V + VP++G+KR + E Sbjct: 313 GEQAELGSAADESVNPVPREVLVPCLPSNSEELSSWLSGLRGSRVTLRVPRRGDKRALAE 372 Query: 343 QALINAHRSHTQKLSTEISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGC 398 NA + Q L++ + L P RIE D SH+ G VG Sbjct: 373 TVQRNAKEALQQHKLKRAGDFNARSAALQNIQEALGLADAPLRIECVDISHVQGTDVVGS 432 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLN-FHPKKQ 456 +VV + K+ YR F + + + DD A + V RRF + + ++ + N P+ + Sbjct: 433 LVVFEDGLPRKSDYRHFGIREAAGQGRSDDVASIAEVTRRRFLRHVSDQSDPNLLSPEGK 492 Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE 516 F P++ ++DGG Q++AA+ VL +L V + + +I +AK + E + + + Sbjct: 493 SRRFAYPPNLYVVDGGAPQVNAAKAVLDELGVSD-VAVIGLAKRLE-----EVWVPSEPD 546 Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSF 575 +++ LY +QR+RDEAHRFAIT HR +R K S LD + G+G R++ L+ F Sbjct: 547 PVIMPRNSEGLYLLQRVRDEAHRFAITYHRSKRSKRMTASALDGVPGLGEHRRKALVTHF 606 Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 G++ + ++ + + ++ GI A + + S Sbjct: 607 GSIARLKEATVDQITAVPGIGVATATAVLEALRPDRSEA 645 >gi|308049925|ref|YP_003913491.1| Excinuclease ABC subunit C [Ferrimonas balearica DSM 9799] gi|307632115|gb|ADN76417.1| Excinuclease ABC subunit C [Ferrimonas balearica DSM 9799] Length = 612 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 213/616 (34%), Positives = 340/616 (55%), Gaps = 30/616 (4%) Query: 5 QMPECPGVYQMLD-IAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + PGVY+M D G VLYVGKA +L+KR+ SY SN + + +++QI +I TVT Sbjct: 14 SVTSEPGVYRMYDTPGGTVLYVGKAKDLKKRLSSYFRSNLPSTKTRALVAQIGHIEVTVT 73 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EAL+LE + IK+ PR+N+LLRDDKS+PYI ++ H+ P L HR + +G YFG Sbjct: 74 HTETEALILEHDYIKQYMPRYNVLLRDDKSYPYIFLS-DHQHPRLAFHRGAKRAKGHYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ + AV ++++ +Q+ F +R C D +++R+RPCL +Q+KRCSGPCTG IS E Y + Sbjct: 133 PYPNGGAVRESLHLMQKLFPIRQCEDGFYKNRSRPCLQYQLKRCSGPCTGMISDEDYAQQ 192 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM- 242 V A+ FL G + + ++A M QA++ +E A +RD++ AL +Q ++ Sbjct: 193 VKLARLFLQGQSQTVIGQLAEQMEQASMALAFEKAAQYRDQIQALRTVQEQQGVQGHQAE 252 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDK 297 D ++ +AC F G+ G+ ++F K ++ +++S FL QFY ++ Sbjct: 253 LDIIGIHLEGGMACCHLLFVRQGKILGSRSYFPKVPRDTDMDELISSFLLQFYLGGGEER 312 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P+ I+L+ +E LE ++ KV I +GE+ + A NA + + +L+ Sbjct: 313 HIPKEIVLNVACDELPALEAMLSERGQGKVSIKTRVRGERAQFQRLAETNARSALSSRLA 372 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + + + + L +R+E +D SH MG V VV G K +YR++N+ Sbjct: 373 HKSTVAERFRQLAEALELEQPIRRMECFDISHTMGEKTVASCVVFNAEGPAKPEYRRYNI 432 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + + DD A M L+RR+ ++ + + PD++ +DGGKGQLS Sbjct: 433 --SGITPGDDYAAMGQALKRRYEKVAEADN---------------LPDILFIDGGKGQLS 475 Query: 478 AAQGVLKKLNVENRIT---IISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRL 533 A+ V++ E+ + ++ +AKG R G+E + E + L P L+ IQ + Sbjct: 476 MAEAVMEAALAESGLPQPLMVGVAKGESRKPGLETLILGFTREVIHLPADAPALHLIQHI 535 Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDEAHRFAI+ HR R KA S L+ I GIG R++ LL+ G ++ + R+S LA + Sbjct: 536 RDEAHRFAISGHRAARGKARGQSVLESIPGIGAKRRQQLLKFLGGMQELKRASVAELAKV 595 Query: 593 EGISKKIACKIYNHFH 608 GIS ++A KIY+ Sbjct: 596 PGISPQLAQKIYDALR 611 >gi|325144534|gb|EGC66833.1| excinuclease ABC, C subunit [Neisseria meningitidis M01-240013] Length = 628 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 220/617 (35%), Positives = 334/617 (54%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PGVY+ + +G VLYVGKA NL++R+ Y N+H+ RI M+ Q+++I T+ Sbjct: 28 LKNLPNLPGVYRFFNESGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 87 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N IK L P++NIL RDDKS+PY++++ H+ P + +R + YF Sbjct: 88 TRSESEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 146 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +AV +I LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y + Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 206 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236 V EA FL+G L + M A +E A +RD+ + + I + N Sbjct: 207 SVREAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 266 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 + N +D +L + L C+ G++ G +FF T ++ F+ Q Y Sbjct: 267 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ ++ L+ + ++G +++ GE++ ++ A NA + Q Sbjct: 327 LGKSKPD--IIISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVRLKMAEQNAQMAIAQ 384 Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + S Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 385 RRLQQSSQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ K DD A MR VL RR+ ++ + E N WPD V++DGGK Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPDAVLIDGGK 493 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 GQ+ A V ++L + I ++ IAKGP+R AGME+ + GE L P L+ +Q Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQT 551 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFAIT HRK+R KA S L +I G+G R++ LL FG ++ + +S E L Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLSDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 611 Query: 592 IEGISKKIACKIYNHFH 608 +EGISK +A IY H H Sbjct: 612 VEGISKALAETIYEHLH 628 >gi|83646747|ref|YP_435182.1| excinuclease ABC subunit C [Hahella chejuensis KCTC 2396] gi|119367656|sp|Q2SF17|UVRC_HAHCH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|83634790|gb|ABC30757.1| excinuclease ABC, C subunit [Hahella chejuensis KCTC 2396] Length = 612 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 219/617 (35%), Positives = 332/617 (53%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 +Q+ PGVY+M+D G VLYVGKA NL+ R+ SY + + + ++ +I +I T+ Sbjct: 13 LKQLTTRPGVYRMMDARGEVLYVGKARNLKNRVSSYFRNTGVSIKTRALVEKIADIEITI 72 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYK--HRDSSTIQGS 120 T +E EALLLE N+IK LKP +NILLRDDKS+PYI ++ + P+L R T +G Sbjct: 73 THSETEALLLEQNLIKTLKPPYNILLRDDKSYPYIYLSSHDEYPSLTFRRVRQKKTGKGR 132 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 +FGP+ S AV +++ LQ+ F +R C DS F +R+RPCL QI RCS PC G I + Y Sbjct: 133 FFGPYTSAAAVRESLALLQKIFRIRQCEDSFFSNRSRPCLQHQIGRCSAPCVGLIDPQSY 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E + A FL G N + + + M A+ + D+E A + RD++ L +Q Sbjct: 193 AEDMSHATMFLEGRNPEIINETIQQMEVASAQLDFERAAVLRDQVDYLRRVQEQQAIEGV 252 Query: 241 RMDCFSLYHNKNLACIQTC--FFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D + + +L + F G+ G+ +F+L ES + +LS FL Q+Y + Sbjct: 253 ARDIDAFALSSSLELVVVHGLFIRAGRVVGSKSFYLSERLESDDGDLLSSFLNQYYFGEH 312 Query: 299 ----CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P+ I + + L+ +F + + V+I + + + + A NA+++ + Sbjct: 313 AIYGLPQEITTTVGLTDKDALKAAFKEVFNRNVRIEHNVRSNRAEWLHLAQTNANQALST 372 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 ++ ++ + + F L KR+E +D SH G + V VV G G +K+ YR+ Sbjct: 373 RMQSQDAQLQRWQSFCDALNLEASVKRVECFDVSHTFGEATVASCVVFGPEGAIKDLYRR 432 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 +N+ V DD M L RR+S+L ++ L PD++++DGGKG Sbjct: 433 YNIKD--VPAGDDYHAMEQALTRRYSKLKDSDVGL--------------PDIILIDGGKG 476 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRL 533 QL A V +L + +T+I +AKG R GME F+ L L L+ IQ++ Sbjct: 477 QLGIAHQVFDELQITG-VTLIGVAKGVTRKPGMETLFISADNSILNLPGDSTALHLIQQI 535 Query: 534 RDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDEAHRFAIT HR +R KK S LD + GIGP R+R LL FG+V+ I R+S E + + Sbjct: 536 RDEAHRFAITGHRNQRNKKRTQSVLDAVPGIGPKRRRDLLNYFGSVRNIERASLEEIKRV 595 Query: 593 EGISKKIACKIYNHFHK 609 GIS+ IA IY FH+ Sbjct: 596 PGISEVIAQTIYAAFHE 612 >gi|332188711|ref|ZP_08390425.1| excinuclease ABC, C subunit [Sphingomonas sp. S17] gi|332011275|gb|EGI53366.1| excinuclease ABC, C subunit [Sphingomonas sp. S17] Length = 639 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 256/609 (42%), Positives = 368/609 (60%), Gaps = 15/609 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+M D G VLY+GKA L+ R+ +Y + R+ M+SQ ++ T Sbjct: 39 TLPLRPGVYRMQDARGDVLYIGKARALKNRVANYTQVDRLPKRLQRMVSQTRSMTIVTTN 98 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 E EALLLEA +IKR +P FN+LLRDDKSFP+IL+ + H P + KHR + G+Y+GP Sbjct: 99 NEAEALLLEAQLIKRYRPAFNVLLRDDKSFPFILLRNDHDFPRIQKHRGARRAVGNYYGP 158 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 FAS +V T+N+LQ+ F LRSC DS F+ R RPCLL+QIKRCS PC G I Y E V Sbjct: 159 FASAGSVNNTLNALQKLFLLRSCTDSFFKGRDRPCLLYQIKRCSAPCVGRIDEAAYAELV 218 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241 +AK FL G + ++ K+ + M A D+E A I RDRL AL+ IQ Sbjct: 219 ADAKNFLGGKSTQVQAKLGKQMQDAAEAMDFELAAILRDRLKALTFIQGTQAINAEGVGD 278 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D F+L + IQ F GQN G +FF ++ ++L+ FL QFY + P + Sbjct: 279 ADIFALACRDGVMGIQAFFIRGGQNWGHRSFFPAHTTDVPEEEVLTSFLSQFYEEVPPAK 338 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 ILL E E +LL + ++ GYKV++ VP++G++R++++QA NA + ++L+ + Sbjct: 339 MILLDRELPEGALLTEALGERAGYKVQLAVPQRGDRRRLLDQAKRNAVEALDRRLAESTT 398 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 +L++ F L P+RIE+YDNSHI G +A+G MVV G GF K QYRKFN+ N+ Sbjct: 399 QAKLLREVADFFDLSEPPQRIEVYDNSHIQGTNALGAMVVAGPEGFQKGQYRKFNIKGNE 458 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 T DD MMR V RRF++ ++ + +WPD+V++DGG+GQL+AA+ Sbjct: 459 AATNDDFGMMREVFRRRFARQLEE---------NPDRDDATWPDLVLIDGGRGQLNAAKA 509 Query: 482 VLKKLNVENRITIISIAKGPKR-SAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 VL+ L +E+ + ++ +AKGP G E F + G +L + P+L+++QRLRDE HRF Sbjct: 510 VLEDLGIED-VCLVGVAKGPHHGREGREVFHMMDGSERMLPVNAPLLFYLQRLRDEVHRF 568 Query: 541 AITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 I HR +R KA SPLDE+ GIGP RK+ LL FGT + + +S E L G+S+ + Sbjct: 569 VIGAHRDKRAKAIGASPLDEVPGIGPARKKALLMHFGTGRAVRNASLEDLRKAPGVSQAV 628 Query: 600 ACKIYNHFH 608 A ++Y+ +H Sbjct: 629 AQQVYDFYH 637 >gi|41407244|ref|NP_960080.1| excinuclease ABC subunit C [Mycobacterium avium subsp. paratuberculosis K-10] gi|81414507|sp|Q741E5|UVRC_MYCPA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|41395595|gb|AAS03463.1| UvrC [Mycobacterium avium subsp. paratuberculosis K-10] Length = 647 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 191/639 (29%), Positives = 307/639 (48%), Gaps = 35/639 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA +L+ R+ SY N R M++ + +TV Sbjct: 13 SIPVEPGVYRFRDPHGRVIYVGKAKSLRSRLTSYFADVANLHPRTRQMVTTAAKVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE N IK PRFN+ RDDKS+P + +T + P L +R YFG Sbjct: 73 NTEVEALQLEYNWIKEFDPRFNVRYRDDKSYPVLAVTLNEEFPRLMVYRGPRRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRT---RPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F R+C+ VF+ RPCLL I +CS PC G +S+E++ Sbjct: 133 PYSHAWAIRETLDLLTRVFPARTCSAGVFKRHKQIDRPCLLGYIDKCSAPCIGRVSAEQH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + V + FLSG ++ + MN A + D+E A RD L AL + Sbjct: 193 RQIVDDFCDFLSGKTDRFARELEQQMNAAAAELDFERAARLRDDLGALKRAMEKQAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLK---TDSESTNAQILSYFLRQFY 294 D + ++ A +Q G+ RG + ++ +S Q++ FL QFY Sbjct: 253 DGTDADVVAFADDELEAAVQVFHVRGGRVRGQRGWIVEKSADPGDSGEEQLVEQFLTQFY 312 Query: 295 TD------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIE 342 + P P +L+ L G +V + VP++G+KR + E Sbjct: 313 GEQAELGGAADESVNPVPREVLVPCLPSNADELTSWLSGLRGSRVALRVPRRGDKRALAE 372 Query: 343 QALINAHRSHTQKLSTEISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGC 398 NA + Q L++ + L P RIE D SH+ G VG Sbjct: 373 TVQRNAKEALQQHKLKRAGDFNARSAALQNIQEALGLSEAPLRIECVDISHVQGTDVVGS 432 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLN-FHPKKQ 456 +VV + K+ YR F + + + DD A + V RRF++ + + + N P+ + Sbjct: 433 LVVFEDGLPRKSDYRHFAIREAAGQGRSDDVASIAEVTRRRFARHLSEQNDPNMLSPEGK 492 Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE 516 F P++ ++DGG Q++AA VL++L + + + +I +AK + E + + + Sbjct: 493 SRRFAYPPNLYVVDGGAPQVNAASAVLEELGITD-VAVIGLAKRLE-----EVWVPSEPD 546 Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSF 575 +++ LY +QR+RDEAHRFAIT HR +R K S LD + G+G R++ L+ F Sbjct: 547 PVIMPRNSEGLYLLQRVRDEAHRFAITYHRSKRSKRMTASVLDSVPGLGEHRRKALVSHF 606 Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 G++ + ++ + + ++ GI A + + S Sbjct: 607 GSIARLKEATVDQITAVPGIGVATATAVLEALRPDESKA 645 >gi|237808305|ref|YP_002892745.1| excinuclease ABC, C subunit [Tolumonas auensis DSM 9187] gi|237500566|gb|ACQ93159.1| excinuclease ABC, C subunit [Tolumonas auensis DSM 9187] Length = 614 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 216/618 (34%), Positives = 342/618 (55%), Gaps = 30/618 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + E PGVY+M D G ++YVGKA NL+KR+ SY +N + + ++S I +I+ TV Sbjct: 15 LKVVTEQPGVYRMTDNTGCIIYVGKAKNLKKRLSSYFRTNVDSAKTRALVSNIADIQITV 74 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EAL+LE N+IK+ +P++NILLRDDKS+PYI ++ H P L HR + +G YF Sbjct: 75 TLTETEALILEHNLIKQHRPKYNILLRDDKSYPYIFLS-SHPHPRLSLHRGARKQKGEYF 133 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GP+ S AV+++++++Q+ F +R C DS + +R+RPCLL+Q+KRCSGPC +S +YM Sbjct: 134 GPYPSGYAVKESLHAMQKIFPIRQCEDSFYANRSRPCLLYQLKRCSGPCVPGLVSDAQYM 193 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E V+ A+ FL G + + +A M QA+ + +E A RD++ + IQ Sbjct: 194 EQVNLARMFLQGKDQQVIALLANKMEQASTELRFEDAAKLRDQIQNMRKIQEQQSVSGNI 253 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY---- 294 ++ +D +A + F G+ G+ +F ++S +++L F++QFY Sbjct: 254 FDDLDIIGTAIRNGIASVHVLFIRQGKVLGSRNYFPSLPADSDISELLYAFVQQFYLSDI 313 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 + K P+ I+L E E+ L + G KV+IT + E+ + + A NA + Sbjct: 314 SGKQLPKEIILDHELEDEDGLSEMLSQISGAKVRITSRTRSERARYCQLATTNAEAALNS 373 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 KL+ + + + + + L +R+E +D SH G + V VV G ++YR Sbjct: 374 KLAHKTTVEQRFRQLQEILNLTTPVQRMECFDISHTQGEATVASCVVFDREGPRNSEYRL 433 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 +N+ + DD A M+ L RRFS+ E+ PD++ +DGG G Sbjct: 434 YNIEG--ITPGDDYAAMKQALFRRFSKQQDAEK---------------IPDILFIDGGLG 476 Query: 475 QLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQ 531 QL A+ V+ L V+ + +I IAKG R G+E E + L P L+ IQ Sbjct: 477 QLKQAESVVSDLIHLVQKQPLLIGIAKGESRKPGLETLIFGNTHEEIHLPADMPALHLIQ 536 Query: 532 RLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+HRFAIT HR+RR KK S L+++ G+G R++ LL+ G ++ I R++P+ LA Sbjct: 537 HIRDESHRFAITGHRQRRNKKRTESLLEKVPGVGAKRRQALLKYLGGMQEIIRATPDELA 596 Query: 591 SIEGISKKIACKIYNHFH 608 + GIS +A IY+ H Sbjct: 597 KVPGISPALARVIYDTLH 614 >gi|260598407|ref|YP_003210978.1| excinuclease ABC subunit C [Cronobacter turicensis z3032] gi|260217584|emb|CBA31833.1| UvrABC system protein C [Cronobacter turicensis z3032] Length = 610 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 218/618 (35%), Positives = 337/618 (54%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D +G V+YVGKA +L+KR+ SY SN + + +++QI NI TV Sbjct: 11 LKTVTSQPGVYRMYDASGTVIYVGKAKDLKKRLASYFRSNLASRKTEALVAQIQNIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+PYI ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLS-GDTHPRLATHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEDYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + V + FL+G + + ++ M QA+ +E A RD++ A+ + N Sbjct: 190 QQVEYVRLFLAGKDDQVINQLVSRMEQASQNLAFEEAARLRDQIQAVRRVTEKQFVSNNG 249 Query: 242 M--DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 D + +AC+ F G+ G+ +++ K S + A+++ F+ QFY Sbjct: 250 DDLDVIGVAFESGMACLHVLFIRQGKVLGSRSYYPKVPSGTELAEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL LL + + G +V + +G++ + ++ A NA + T + Sbjct: 310 MRTLPGEILLDFPLTTPELLAETLTEIAGRRVNVQTRPRGDRARYLKLARTNAATALTTR 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L + LP I R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTISQRLTALAQALHLPEIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I+ + PD++++DGGKGQ Sbjct: 429 NITD--ITPGDDYAAMNQVLRRRYGKAIEESK---------------VPDIILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 LS A+ V +L+V ++ ++ +AKG R AG+E F+ +GE L P L+ IQ Sbjct: 472 LSQAKTVFAELDVPWDKHHPLLLGVAKGSDRKAGLETLFLEPEGEGFALPSDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AIT HRK+R K S L+ I GIGP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHNHAITGHRKKRAKVKNTSTLETIEGIGPKRRQMLLKYMGGLQPLLNASVEEIA 591 Query: 591 SIEGISKKIACKIYNHFH 608 + GIS+ +A KIY Sbjct: 592 KVPGISQALAEKIYYSLK 609 >gi|15677192|ref|NP_274345.1| excinuclease ABC subunit C [Neisseria meningitidis MC58] gi|24212619|sp|Q9JZ26|UVRC_NEIMB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|7226569|gb|AAF41701.1| excinuclease ABC, subunit C [Neisseria meningitidis MC58] Length = 617 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 221/617 (35%), Positives = 335/617 (54%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PGVY+ + +G VLYVGKA NL++R+ Y N+H+ RI M+ Q+++I T+ Sbjct: 17 LKNLPNLPGVYRFFNESGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 76 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N IK L P++NIL RDDKS+PY++++ H+ P + +R + YF Sbjct: 77 TRSESEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 135 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +AV +I LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y + Sbjct: 136 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 195 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236 V EA FL+G L + M A +E A +RD+ + + I + N Sbjct: 196 SVREAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 255 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 + N +D +L + L C+ G++ G +FF T ++ F+ Q Y Sbjct: 256 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 315 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ ++ L+ + ++G +++ GE++ ++ A NA + Q Sbjct: 316 LGKSKPD--IIISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVRLKMAEQNAQMAIAQ 373 Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + S Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 374 RRLQQSSQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 433 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ K DD A MR VL RR+ ++ + E N WPD V++DGGK Sbjct: 434 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPDAVLIDGGK 482 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 GQ+ A V ++L + I ++ IAKGP+R AGME+ + GE L P L+ +Q Sbjct: 483 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQT 540 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFAIT HRK+R KA S L +I G+G R++ LL FG ++ + +S E L Sbjct: 541 VRDESHRFAITGHRKKRDKARVTSSLSDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 600 Query: 592 IEGISKKIACKIYNHFH 608 +EGISK +A IYNH H Sbjct: 601 VEGISKALAETIYNHLH 617 >gi|296284355|ref|ZP_06862353.1| excinuclease ABC subunit C [Citromicrobium bathyomarinum JL354] Length = 651 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 258/611 (42%), Positives = 361/611 (59%), Gaps = 11/611 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+MLD G VLYVGKA +L+ R+ +Y N T+R+ M+SQ ++ T Sbjct: 47 TLPPRPGVYRMLDARGDVLYVGKARSLKARVANYTQINALTNRLQRMVSQTRSMEIVTTN 106 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E ALLLEA IKR +P FN+LLRDDKSFP+IL+ H P ++KHR + +G+Y+GP Sbjct: 107 SEAGALLLEAQFIKRYRPPFNVLLRDDKSFPFILLRADHSFPRIHKHRGARRAKGNYYGP 166 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 FAS +V KT+N+LQ+ F LRSC DS F +R RPCLL+QIKRCS PC G I + Y E V Sbjct: 167 FASAGSVNKTLNALQKLFLLRSCTDSFFNNRDRPCLLYQIKRCSAPCVGRIDEDGYEELV 226 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241 +AK FL G + ++++ + + M +A K D+E+A I RDRL A + IQ Sbjct: 227 QQAKDFLGGKSSSVQQDLEKQMAEAAEKLDFETAAILRDRLRAATFIQGAQAVNATGVGD 286 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D F+L +Q F GQN G FF + ++L+ + QFY + P P Sbjct: 287 ADVFALAAKGGQIAVQAFFIRGGQNWGHRAFFPTHTQDVDKDEVLARVIMQFYEEVPPPR 346 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 +L+ E E LL + + +KV+I+VP++G++R+++EQA NA + ++L+ + Sbjct: 347 TLLVDRELPEAELLTQALCEMAEHKVEISVPQRGDRRRLMEQAQRNAVDALDRRLAETGT 406 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 + +D + L P+RIEIYDNSHI G AVG MVV G GF K QYRKFN+ Sbjct: 407 KAKLNRDLAEFLELEEPPQRIEIYDNSHIQGAKAVGAMVVAGPEGFEKGQYRKFNIKSAQ 466 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 DD MMR V++RRF L EN + K+ WPD+V+LDGGKGQ+S + Sbjct: 467 T--NDDFGMMREVMQRRFRNL---AENPDGEEGKRNTHETVWPDLVLLDGGKGQMSTVRD 521 Query: 482 VLKKLNVENRITIISIAKGPKR-SAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 L ++ ++N + +I+IAKGP G E F G L + P+L+ +Q LRDE HR+ Sbjct: 522 TLAEMGIDN-VPLIAIAKGPDHGREGREVFHFPDGREKTLPVNSPLLFHLQNLRDEVHRY 580 Query: 541 AITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 I HR +R +A SPLDEI GIGP RKR LL FGT + ++ + L GIS + Sbjct: 581 VIGAHRAKRSRAITASPLDEIPGIGPARKRALLLHFGTAGKVRAAALDDLKRAPGISDAV 640 Query: 600 ACKIYNHFHKN 610 A +IY+ +H N Sbjct: 641 AQQIYDFYHAN 651 >gi|167034667|ref|YP_001669898.1| excinuclease ABC subunit C [Pseudomonas putida GB-1] gi|166861155|gb|ABY99562.1| excinuclease ABC, C subunit [Pseudomonas putida GB-1] Length = 585 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 208/603 (34%), Positives = 329/603 (54%), Gaps = 25/603 (4%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D R+LYVGKA NL+KR+ SY + ++++I + T+T E EALLLE Sbjct: 1 MFDGEARLLYVGKAKNLKKRLASYFRKTGLAPKTAALVARIAQVETTITANETEALLLEQ 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N+IK +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S A+ ++ Sbjct: 61 NLIKEWRPPYNILLRDDKSYPYVFLSDGE-FPRLGIHRGAKKAKGRYFGPYPSAGAIRES 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194 ++ LQ+ F +R C DS + +RTRPCL +QIKRC GPCT +S+E+Y E V + FL G Sbjct: 120 LSLLQKAFSVRQCEDSYYANRTRPCLQYQIKRCKGPCTDLVSAEEYAEDVRHSVMFLEGR 179 Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFSLYHNKN 252 + L ++ M +A + ++E A RD++A L +Q+ +D + + N Sbjct: 180 SQQLGNELNAEMEKAAMALNFEKAAELRDQIALLRRVQDQQYIEGGNGDVDVIAAFVNPG 239 Query: 253 LACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK---PCPENILLSEEA 309 AC+ G+ G+ FF + E A++++ FL Q+Y P ++++ Sbjct: 240 GACVHLISVRGGRVLGSKNFFPQVGIEEEVAEVMAAFLSQYYLGNAERELPGELIVNVVH 299 Query: 310 EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDF 369 E+ + + G ++ I+ +G + + + A+ NA ++ +L+ + Sbjct: 300 EDFDAITEALHTLRGRELTISHRVRGTRARWQQLAVTNAEQALNARLANRQHMAARFEAL 359 Query: 370 TKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCA 429 + L +P+R+E YD SH G + V VV G G +K+ YR+FN+ V DD A Sbjct: 360 AEVLGLDEVPQRLECYDISHSSGEATVASCVVFGPEGPLKSDYRRFNIEG--VTAGDDYA 417 Query: 430 MMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE 489 M L RR+ ++ E L PDV+++DGGKGQL+ A+ V+++L Sbjct: 418 AMHQALTRRYGRIKDGEGKL--------------PDVLLVDGGKGQLNMARDVMQELGFT 463 Query: 490 NRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAITTHRKR 548 + +T++ +AKG R AG E ++ L L+ IQ++RDEAHRFAIT HR R Sbjct: 464 D-LTLLGVAKGVTRKAGFETLYLNDVHHEFTLKGDSSALHLIQQIRDEAHRFAITGHRAR 522 Query: 549 RKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 R KA S L+++ G+GP R+R LL+ FG ++ ++R+S + +A GISKK+A IY Sbjct: 523 RGKARRVSSLEDVAGVGPKRRRDLLKHFGGLQELNRASIDEIAKAPGISKKLAESIYASL 582 Query: 608 HKN 610 H Sbjct: 583 HSE 585 >gi|183598704|ref|ZP_02960197.1| hypothetical protein PROSTU_02116 [Providencia stuartii ATCC 25827] gi|188020895|gb|EDU58935.1| hypothetical protein PROSTU_02116 [Providencia stuartii ATCC 25827] Length = 610 Score = 538 bits (1386), Expect = e-150, Method: Composition-based stats. Identities = 218/619 (35%), Positives = 336/619 (54%), Gaps = 31/619 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY +N + + ++ I +I TV Sbjct: 11 LKTVTNQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRTNVSSRKTEQLVKNIASIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+PYI ++ K P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLS-KETHPRLSMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ +Q+ F +R C DSV+++R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNSYAVRETLALMQKLFPIRQCEDSVYKNRSRPCLQYQIGRCLGPCVKGLVSDEEYE 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IY 239 + V+ + FL+G + + + M +A+ +E A RD++ A+ + Sbjct: 190 QQVNYVRLFLTGKDQQVLTGLIERMEKASQALRFEEAARFRDQIQAVRAVTEQQFVSGDS 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295 + +D + LACI F G+ G+ +++ K +++ +++ FL QFY Sbjct: 250 DDLDVIGVAFEAGLACIHVLFIRQGKVLGSRSYYPKIPADTLLEEVVQTFLGQFYLQGSE 309 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ P ILL E +LL S G K++I +G + + ++ A NA + K Sbjct: 310 NRTLPGEILLDFALPEKTLLADSLSHIAGRKIQIQTQPRGARARYLKLARTNASTALLTK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L+ + + + K L I R+E +D SH MG V VV +NG VK++YR++ Sbjct: 370 LAQQSTIHQRMSSLAKTVGLDSIA-RMECFDISHTMGEQTVASCVVFDKNGPVKSEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I + PD++ +DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMHQVLTRRYGKHIDESK---------------VPDIIFIDGGKGQ 471 Query: 476 LSAAQGVLKKLNVE---NRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L A+ V L+V+ NR +I +AKG R AG+E F +GE + L P L+ IQ Sbjct: 472 LGQAKDVFNSLDVDWDKNRPLLIGVAKGSDRKAGLETLFFKPEGEGVALPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AIT HR+RR K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHNHAITGHRQRRAKVKNTSALESIEGVGPKRRQMLLKYMGGLQPLKNASIEEIA 591 Query: 591 SIEGISKKIACKIYNHFHK 609 + IS +A KIYN + Sbjct: 592 KVPSISYALAEKIYNALKQ 610 >gi|217970707|ref|YP_002355941.1| excinuclease ABC subunit C [Thauera sp. MZ1T] gi|217508034|gb|ACK55045.1| excinuclease ABC, C subunit [Thauera sp. MZ1T] Length = 605 Score = 538 bits (1385), Expect = e-150, Method: Composition-based stats. Identities = 201/609 (33%), Positives = 313/609 (51%), Gaps = 26/609 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + E PGVY+M+ +VLYVGKA NL++R+ SY + RI M++Q+ + T T Sbjct: 18 TLTEEPGVYRMIGADDKVLYVGKAKNLKRRVSSYFQKTVSSPRIAMMVAQVLRVDITATR 77 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EAL+LE N+IK L PR+NIL RDDK++PYI ++ P L HR + T YFGP Sbjct: 78 SEAEALILENNLIKSLAPRYNILFRDDKTYPYIELSADE-FPRLAYHRGAFTKGARYFGP 136 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F + AV ++I+ LQ+TF LR+C ++VF +R+RPCLL QIKRC+ PC + Y V Sbjct: 137 FPNAWAVRESIHLLQKTFQLRTCENTVFANRSRPCLLHQIKRCTAPCVSLVEPAAYAADV 196 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 A +FL G + + + M A + +E A RD++ L + + + Sbjct: 197 KLATRFLDGQASEVIDDLTNRMQAAAERLAFEEAAACRDQVRVLQAVLHKQFVDSRKDED 256 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D + L C+ G++ G F + S L F+ Q Y+ P P Sbjct: 257 VDVLAAIEADGLTCVNIAMVRGGRHLGDRPQFPSGAAVSGAVDSLLAFVEQHYSQHPIPA 316 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 IL++ E + + + P+ ++ +E A NAH + + Sbjct: 317 RILVNLPPEAVK---ETLAEITERPPGVVSPRFEAEKAWMEMAEKNAHLAIQARARDTGR 373 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 + L+ + + P+RIE +D SH MG + V VV + +YR++N+ Sbjct: 374 IEQRLEALREALGMDEAPQRIECFDISHTMGEATVASCVVCEAGAMKRAEYRRYNI--AG 431 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 + DD A MR LERR+ ++ E PD++++DGGKGQ+SAA+ Sbjct: 432 ITGGDDFAAMRQALERRYGKVAAGE--------------GVCPDLILIDGGKGQVSAARA 477 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRLRDEAHRF 540 +L ++ +E + ++ +AKG R AG+E G L L L+ I +RDEAHRF Sbjct: 478 ILAEVGLE-AVAMVGVAKGEGRKAGLETLIFPDGREGLALGGESAALHLIVEIRDEAHRF 536 Query: 541 AITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AIT HR +R KA S L+++ G+GP R+R LL +FG + + ++ E L +EG+S+K+ Sbjct: 537 AITGHRAKRAKARVGSKLEDVPGVGPSRRRNLLAAFGGLDGVREATVEDLCRVEGVSRKL 596 Query: 600 ACKIYNHFH 608 A +I+ Sbjct: 597 AEQIHAALR 605 >gi|254775803|ref|ZP_05217319.1| excinuclease ABC subunit C [Mycobacterium avium subsp. avium ATCC 25291] Length = 647 Score = 538 bits (1385), Expect = e-150, Method: Composition-based stats. Identities = 191/639 (29%), Positives = 307/639 (48%), Gaps = 35/639 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA +L+ R+ SY N R M++ + +TV Sbjct: 13 SIPVEPGVYRFRDPHGRVIYVGKAKSLRSRLTSYFADVANLHPRTRQMVTTAAKVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE N IK PRFN+ RDDKS+P + +T + P L +R YFG Sbjct: 73 NTEVEALQLEYNWIKEFDPRFNVRYRDDKSYPVLAVTLNEEFPRLIVYRGPRRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRT---RPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F R+C+ VF+ RPCLL I +CS PC G +S+E++ Sbjct: 133 PYSHAWAIRETLDLLTRVFPARTCSAGVFKRHKQIDRPCLLGYIDKCSAPCIGRVSAEQH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + V + FLSG ++ + MN A + D+E A RD L AL + Sbjct: 193 RQIVDDFCDFLSGKTDRFARELEQQMNAAAAELDFERAARLRDDLGALKRAMEKQAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLK---TDSESTNAQILSYFLRQFY 294 D + ++ A +Q G+ RG + ++ +S Q++ FL QFY Sbjct: 253 DGTDADVVAFADDELEAAVQVFHVRGGRVRGQRGWIVEKSADPGDSGEEQLVEQFLTQFY 312 Query: 295 TD------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIE 342 + P P +L+ L G +V + VP++G+KR + E Sbjct: 313 GEQAELGGAADESVNPVPREVLVPCLPSNADELTSWLSGLRGSRVALRVPRRGDKRALAE 372 Query: 343 QALINAHRSHTQKLSTEISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGC 398 NA + Q L++ + L P RIE D SH+ G VG Sbjct: 373 TVQRNAKEALQQHKLKRAGDFNARSAALQNIQEALGLSEAPLRIECVDISHVQGTDVVGS 432 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLN-FHPKKQ 456 +VV + K+ YR F + + + DD A + V RRF++ + + + N P+ + Sbjct: 433 LVVFEDGLPRKSDYRHFAIREAAGQGRSDDVASIAEVTRRRFARHLSEQNDPNMLSPEGK 492 Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE 516 F P++ ++DGG Q++AA VL++L + + + +I +AK + E + + + Sbjct: 493 SRRFAYPPNLYVVDGGAPQVNAASAVLEELGITD-VAVIGLAKRLE-----EVWVPSEPD 546 Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSF 575 +++ LY +QR+RDEAHRFAIT HR +R K S LD + G+G R++ L+ F Sbjct: 547 PVIMPRNSEELYLLQRVRDEAHRFAITYHRSKRSKRMTASVLDSVPGLGEHRRKALVSHF 606 Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 G++ + ++ + + ++ GI A + + S Sbjct: 607 GSIARLKEATVDQITAVPGIGVATATAVLEALRPDESKA 645 >gi|90416100|ref|ZP_01224033.1| excinuclease ABC subunit C [marine gamma proteobacterium HTCC2207] gi|90332474|gb|EAS47671.1| excinuclease ABC subunit C [marine gamma proteobacterium HTCC2207] Length = 607 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 221/616 (35%), Positives = 342/616 (55%), Gaps = 25/616 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + + PG+YQM + G +LYVGKA NL+ R+ SY + + ++ +I I TV Sbjct: 9 LKSLTQRPGIYQMFNGEGEILYVGKAKNLKNRVSSYFRKTGLSPKTAALVKRIEQIDVTV 68 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EAL+LE N+IK+ +P FNIL+RDDKS+PYIL+TDK K P L HR + +G+YF Sbjct: 69 TETETEALILEHNLIKQRRPPFNILMRDDKSYPYILLTDKDKWPRLAFHRGAKKAKGTYF 128 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF SV AV +T++ LQ+TF +R C DS F +R+RPCL +QIKRC+ PC +S E Y Sbjct: 129 GPFPSVYAVRETMSFLQKTFKVRQCEDSFFSNRSRPCLQYQIKRCTAPCVEFVSPEDYAA 188 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR- 241 V+ + +L G + +++ +M +A +E A RD++AAL IQ + Sbjct: 189 DVNVTRLYLDGKGDKILKQLEGDMVKAAEALAFEKAAETRDQIAALRQIQTQQVIEKGKG 248 Query: 242 -MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT----D 296 +D + N AC+ + G+ G+ +++ K ++L FL Y Sbjct: 249 TIDVVAGAINNGQACVHMLYIRQGRILGSRSYYPKAPLAQNVGELLDDFLPLLYLAGGGR 308 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P+ ILL+ E + L + Q K++I +G + K IE A A ++ KL Sbjct: 309 PDLPKEILLNAEIDSAETLTEALELQVQRKLEIRHSVRGFRAKWIELAERTAEQNLAGKL 368 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 +++ S + ++ + L +P+RIE +D SH G + V VV +G VK+ YR+FN Sbjct: 369 ASKQSQEKRMESLRETLELESLPERIECFDISHSSGEAVVASCVVFDASGAVKSDYRRFN 428 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + DD A M + RR+++L+K E L P+++++DGGKGQ+ Sbjct: 429 IEG--ITGGDDYAAMEQAIRRRYTRLMKGEGKL--------------PEILLIDGGKGQI 472 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRD 535 A+ VL L V + I+ +AKG R AG E + ++ + L+ IQ++RD Sbjct: 473 GIAKEVLADLGVVG-VMILGVAKGTTRKAGFETLILADQNNRVIARPQQAALHLIQQIRD 531 Query: 536 EAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFAIT H+ RR KK SPL+ I G+GP R+R LL+ FG ++ + ++S L + Sbjct: 532 EAHRFAITGHKARRDKKRRTSPLEGIPGVGPTRRRDLLKHFGGIREVQKASVADLMKVPN 591 Query: 595 ISKKIACKIYNHFHKN 610 ISKK+A +IY+ + + Sbjct: 592 ISKKVADEIYSALYND 607 >gi|183982240|ref|YP_001850531.1| excinuclease ABC (subunit c-nuclease) UvrC [Mycobacterium marinum M] gi|229558460|sp|B2HP72|UVRC_MYCMM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|183175566|gb|ACC40676.1| excinuclease ABC (subunit c-nuclease) UvrC [Mycobacterium marinum M] Length = 647 Score = 537 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 188/638 (29%), Positives = 300/638 (47%), Gaps = 35/638 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA +L+ R+ SY + R M++ + +TV Sbjct: 13 SIPVEPGVYRFRDPHGRVIYVGKAKSLRSRLTSYFADIAHLQPRTRQMVTTAAKVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE N IK PRFN+ RDDKS+P + +T P L +R YFG Sbjct: 73 NTEVEALQLEYNWIKEFDPRFNVRYRDDKSYPVLAVTLNEDFPRLMVYRGPRRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRT---RPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F R+C+ VF+ RPCLL I +CS PC G +S E++ Sbjct: 133 PYSHAWAIRETVDLLTRVFPARTCSMGVFKRHKQIDRPCLLGYIDKCSAPCIGRVSKEQH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + V + FLSG ++ + MN A D+E A RD +AL + Sbjct: 193 RQIVDDFCDFLSGKTDRYARELEQQMNAAAENLDFERAARLRDDRSALKRAMEKQAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST---NAQILSYFLRQFY 294 D + ++ A +Q G+ RG + ++ S Q++ FL QFY Sbjct: 253 DGTDADVVAFADDELEAAVQVFHVRGGRVRGQRGWVVEKPSAPDVSVEEQLVEQFLAQFY 312 Query: 295 TD------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIE 342 D P P +L+ L G +V + VP++G+KR + E Sbjct: 313 GDQAELGGAADESVNPVPREVLVPCLPSNADQLSSWLSGLRGSRVTLRVPRRGDKRALAE 372 Query: 343 QALINAHRSHTQKLSTEISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGC 398 NA + Q L++ + L P RIE D SH+ G V Sbjct: 373 TVQRNAKEALQQHKLKRAGDFNARSAALQNIQEALGLADAPLRIECVDISHVQGTDVVAS 432 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLN-FHPKKQ 456 +VV + K+ YR F + + + DD A + V RRF + + + + N P+ + Sbjct: 433 LVVFEDGLPRKSDYRHFAIREAAGQGRSDDVASIAEVTRRRFQRHLSEQNDPNLLSPEGK 492 Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE 516 F P++ ++DGG Q++AA VL++L + + + +I +AK + E + + + Sbjct: 493 SRRFAYPPNLYVVDGGAPQVNAASAVLEELGIVD-VAVIGLAKRLE-----EVWVPSEPD 546 Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSF 575 +++ LY +QR+RDEAHRFAIT HR +R K S LD + G+G R++ L+ F Sbjct: 547 PIIMPRNSEGLYLLQRVRDEAHRFAITYHRSKRSKRMTASALDAVPGLGEHRRKALVTHF 606 Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 G++ + ++ + + ++ GI A + + Sbjct: 607 GSIARLKEATVDQITAVPGIGVATATAVLEALRPDQPG 644 >gi|296314486|ref|ZP_06864427.1| excinuclease ABC subunit C [Neisseria polysaccharea ATCC 43768] gi|296838789|gb|EFH22727.1| excinuclease ABC subunit C [Neisseria polysaccharea ATCC 43768] Length = 628 Score = 537 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 222/617 (35%), Positives = 338/617 (54%), Gaps = 27/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P+ PGVY+ D G+VLYVGKA NL++R+ Y N+H+ RI M+ Q+++I T+ Sbjct: 28 LKNLPKLPGVYRFFDEGGKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 87 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N IK L P++NIL RDDKS+PY++++ H+ P + +R + YF Sbjct: 88 TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 146 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +AV +I LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y + Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 206 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236 V EA FL+G L + M A +E A +RD+ + + I + N Sbjct: 207 SVREAVTFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 266 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 + N +D +L + + C+ G++ G +FF T ++ F+ Q Y Sbjct: 267 NNPNDIDLLALAVSDGIVCVHWVSIRGGRHVGDKSFFPDTQNDPEPNGQDYAEAFVAQHY 326 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ I++S +L E + +G +++ GE++ ++ A NA + Q Sbjct: 327 LGKSKPD-IIISNFPMPDALKEALESE-HGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 384 Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + S Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 385 RRLQQSSQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ K DD A MR VL RR+ ++ + E N WP+VV++DGGK Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPNVVLIDGGK 493 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 GQ+ A V ++L + I ++ IAKGP+R AGME+ + E L+ P L+ +Q Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTSEVFRLHPHSPALHLLQT 551 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFAIT HRK+R KA S L +I G+G R++ LL FG ++ + +S E L Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLSDIPGVGSKRRQALLTRFGGLRGVVAASKEDLEQ 611 Query: 592 IEGISKKIACKIYNHFH 608 +EGISK +A IY H H Sbjct: 612 VEGISKALAETIYEHLH 628 >gi|325983074|ref|YP_004295476.1| UvrABC system protein C [Nitrosomonas sp. AL212] gi|325532593|gb|ADZ27314.1| UvrABC system protein C [Nitrosomonas sp. AL212] Length = 605 Score = 537 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 224/612 (36%), Positives = 337/612 (55%), Gaps = 28/612 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+M++ G V+YVGKA +L+KR+ SY +N R M+SQI I TVT Sbjct: 14 SLPLQPGVYRMINAKGEVIYVGKAVSLKKRVASYFQKSNLAPRTQLMVSQITGIETTVTR 73 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK LKPR+NIL RDDKS+PY++++ H+ P L +R + YFGP Sbjct: 74 SEAEALLLENNLIKSLKPRYNILFRDDKSYPYVILS-GHEFPRLGFYRGALDKTHQYFGP 132 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + + V ++I LQ+ F LR+C DSVF +RTR CLL+QIKRCS PC IS ++Y V Sbjct: 133 YPNAGMVRESIQLLQKVFRLRTCEDSVFSNRTRACLLYQIKRCSAPCISRISRQEYQTDV 192 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY----- 239 A+ FL G + E I M QA+ + +YE A RD++ AL I+ Sbjct: 193 KNAEMFLQGKQTEVMEMINVKMQQASERLEYEQAAALRDQVQALRRIREKQFVDSGKALD 252 Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 + + C C+ G++ G +FF + + + ++ FL Q Y ++ Sbjct: 253 ADVVVCVVSPDGSGKVCVNLAMIRGGRHLGDKSFFPQNADDYSAVNVVEAFLAQHYLNRS 312 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P I++ E+ E +L + ++ G+K+ + + GEKR ++ A NAH + Q +S Sbjct: 313 VPPLIIVGEKIEREALQTL-LTEECGHKITLQLNPVGEKRVWLDMATENAHLALKQMMSR 371 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + + L ++ +P +RIE +D SH +G + V VV N+YR++N+ Sbjct: 372 HANQEKRLLALQQELQMP-GLQRIECFDISHTLGEATVASCVVYDNFAMRNNEYRRYNIE 430 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + DD A MR L RR+ ++I E PD++++DGGKGQ+SA Sbjct: 431 G--ITPGDDYAAMREALSRRYQKVISGE--------------GQLPDLILIDGGKGQVSA 474 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLRDEA 537 AQ L++L + + +++ +AKG +R G+E+ + L L L+ IQ++RDEA Sbjct: 475 AQEALQELGINDA-SLLGVAKGEQRKPGLEQLISPLFEKPLQLPSEHAALHLIQQIRDEA 533 Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAI HR RR KA S L+ I G+G R++ LL FG +K + +S E L EGIS Sbjct: 534 HRFAIQGHRGRRGKARTSSSLETIEGVGAKRRQRLLGRFGGLKGVLTASIEELQQTEGIS 593 Query: 597 KKIACKIYNHFH 608 +K+A KIY H Sbjct: 594 RKLAEKIYRELH 605 >gi|297561956|ref|YP_003680930.1| excinuclease ABC, C subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846404|gb|ADH68424.1| excinuclease ABC, C subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 675 Score = 536 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 188/643 (29%), Positives = 315/643 (48%), Gaps = 46/643 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D +GRV+YVGKA NL+ R+ SY R M+S ++ +T+ Sbjct: 13 SIPTDPGVYRFRDSSGRVIYVGKAKNLRSRLSSYFRDFAGLHPRTQQMVSTAADVDWTIV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE + IK+ PRFN+ RDDKS+PY+ +T + + P + R + YFG Sbjct: 73 GTEVEALQLEYSWIKQYDPRFNVKYRDDKSYPYLAVTLQEEFPRVQVMRGAKRRGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F +R+C+ VF R+ RPCLL I +C PC G+ S E + Sbjct: 133 PYSHAWAIRETVDLLLRVFPVRTCSPGVFRGARNSGRPCLLGYIGKCVAPCVGKASPEDH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--- 237 + FL+G ++ M +A + +YE A RD + AL Sbjct: 193 RALAEDFCSFLAGDTGRFLRELEGRMREAAGEMEYERAARIRDDIEALRAALEKQAVVLP 252 Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294 D ++ ++ A +Q G+ RG + + ++ ++++ FL Q Y Sbjct: 253 DSTDCDVIAVADDQLEAAVQIFHVRGGRIRGQRGYVVDKVADDGPGELIATFLGQIYGPT 312 Query: 295 --------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 T P +L+S E + + + G V + VP++G+K+ ++E Sbjct: 313 RGDDESGGTGTAVPREVLVSHEPADPEAMAAWLSEHRGSSVDLRVPQRGDKKSLMETVAK 372 Query: 347 NAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVV 402 NA S + + + L++ + LP P RIE +D S++ G V MVV Sbjct: 373 NAAESLARHKTHRAGDLSTRGRALQEIQEALELPEAPLRIECFDISNLQGEHVVASMVVF 432 Query: 403 GENGFVKNQYRKFNLHPNDVKT--QDDCAMMRMVLERRFSQLIKNEENLNF--------- 451 + K++YR+F++ + Q D A M V+ RRF + ++ Sbjct: 433 EDGLARKSEYRRFSVRGSGEGGREQHDVAAMYEVVHRRFRRYLEESARSGEVARMGETGD 492 Query: 452 ------HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSA 505 + F P++V++DG + Q AA+ L +L +E+ + + +AK + Sbjct: 493 HGGHQSDDEPSPGKFAYPPNLVVVDGARPQAEAARRALDELGIED-VAVCGLAKRLE--- 548 Query: 506 GMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIG 564 E + + ++L LY +QR+RDEAHRFAI HR +R KA S LDE+ G+G Sbjct: 549 --EVWLPGDEDPVILPRAGEGLYLLQRVRDEAHRFAIQYHRHKRAKALTGSSLDELPGLG 606 Query: 565 PLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 P R+ L+++FG+V+ ++ ++ E +A++ GI K+A ++ H Sbjct: 607 PSRRTALIKAFGSVRRLASATAEEIAAVPGIGPKLAEAVHAHL 649 >gi|308177691|ref|YP_003917097.1| excinuclease ABC subunit C [Arthrobacter arilaitensis Re117] gi|307745154|emb|CBT76126.1| excinuclease ABC subunit C [Arthrobacter arilaitensis Re117] Length = 647 Score = 536 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 198/633 (31%), Positives = 318/633 (50%), Gaps = 31/633 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + +P PGVY+ D GRV+YVGKA L+ R+ SY + + T + M+ ++ + Sbjct: 10 KTSDIPTKPGVYRFRDEHGRVIYVGKAKVLRNRLTSYFANPDRLTPKTRAMVFTAGSVEW 69 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV +E+EAL LE + IK PRFNI+ RDDK++PY+ IT K P R Sbjct: 70 TVVGSELEALQLEYSWIKEYNPRFNIVFRDDKTYPYLAITLNEKYPRALVMRGDKRKGVK 129 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISS 177 YFGPF A+ +T+++L R F +RSCA VF+ RPCLL I +CS PC G IS Sbjct: 130 YFGPFYPAKAIRETLDTLLRVFPVRSCAPGVFKRAEASGRPCLLGYIDKCSAPCVGRISE 189 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E + + + F+SG + + M +A + +YE A +RD +AAL + N Sbjct: 190 EDHRQLADDLCTFMSGEATKFTKALTVKMQEAVAELEYEKAARYRDDIAALKKVFERNAV 249 Query: 238 IYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + + D F ++ ++ A +Q G+ R + ++ +++T A+ + L Q Y Sbjct: 250 VLDDRTEADIFGIHDDELEAAVQVFHVRDGRIRSQRGWVVEKVADTTEAEFVEQLLTQVY 309 Query: 295 TDKP--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 D P+ IL+ EE + + G KV + V ++G+K + NA ++ Sbjct: 310 ADHADRIPKEILVPALPEEIEDVTTWLTELRGSKVSLRVAQRGDKAALASTVEENAEQAL 369 Query: 353 TQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 S + + +++ RIE YD SH G + V MVV + Sbjct: 370 RLHKSKRAGDITTRSLAMQELQDALGAEQALLRIECYDASHTQGTNVVASMVVFEDGLPK 429 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNE---------ENLNFHPKKQEYS 459 K++YRKF++ + +DD A M V+ RRFS+ +K + E ++++ Sbjct: 430 KSEYRKFSITGD--AARDDTASMYDVIYRRFSRYLKEKVDPASFATGEVEGESGEQEKKK 487 Query: 460 FPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALV 519 F P +VI+DGG Q++AAQ + L +++ I ++ +AK + E + ++ Sbjct: 488 FSYPPSLVIVDGGPPQVAAAQKAMDDLGIDD-IPVVGLAKRLE-----ELWLPDDPFPVI 541 Query: 520 LNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTV 578 L LY +QRLRDEAHRFAIT HR +R K+ S LD I G+G ++ L + FG++ Sbjct: 542 LPRASAALYLVQRLRDEAHRFAITFHRAKRAKSMISSDLDAIPGLGKSKQAALRKHFGSM 601 Query: 579 KMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 K I +S E L + G+ +K+A I + ++ Sbjct: 602 KKIRAASVEELMDVPGVGEKLATSIKDSLEDSS 634 >gi|158321277|ref|YP_001513784.1| excinuclease ABC subunit C [Alkaliphilus oremlandii OhILAs] gi|189038017|sp|A8MJ06|UVRC_ALKOO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|158141476|gb|ABW19788.1| excinuclease ABC, C subunit [Alkaliphilus oremlandii OhILAs] Length = 621 Score = 536 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 199/622 (31%), Positives = 338/622 (54%), Gaps = 21/622 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +PE PGVY M + ++YVGKA +L+ R++ Y S+ NH ++ M+S I + Sbjct: 7 KLRTLPEKPGVYMMRNDKNEIIYVGKAISLKNRVRQYFQSSKNHPPKVKAMVSHIVTFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT TE+EAL+LE N+IK +P++N+LLRDDK++PYI IT + P + K R + Sbjct: 67 IVTDTELEALILECNLIKENRPKYNVLLRDDKTYPYIKITTNEEYPRILKTRKVIKDKAK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR---HRTRPCLLFQIKRCSGPCTGEISS 177 YFGP+ ++ A+ +T++ + + +R+C ++ R ++ RPCL + IK+C GPCTG ++ Sbjct: 127 YFGPYTNIGALNETLDVIHTIYPIRTCNKNIERMIANKERPCLNYHIKKCIGPCTGLVTK 186 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN-- 235 E+Y + +H+ FL G L KI M A + D+E+A +RD++ AL++I Sbjct: 187 EEYHQMIHDIILFLDGKEDELVRKIEEKMKAAAISMDFENAARYRDQIIALNNIVEKQKI 246 Query: 236 -DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 D ++ N+ IQ F G+ F LK + +N +I++ FL+QFY Sbjct: 247 VSVAEQDQDVIAMAKNEGNTWIQVFFIRKGKLVQREHFILKDTEDDSNQEIIASFLKQFY 306 Query: 295 TDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----H 349 + P+ IL+ E E+ ++LE + G KV I VP++G+K+++++ NA Sbjct: 307 SGATFVPKEILIEESVEDLNVLEEWLSGKRGNKVSIKVPQKGDKKELLDMVKKNALMTME 366 Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 ++ T + + L + + L +P RIE YD S+I G +VG MVV Sbjct: 367 QATTVIQLEKEKTEDTLIELAQLLDLEEVPYRIESYDISNIQGVESVGSMVVFEGGKSKN 426 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP-KKQEYSFPSWPDVVI 468 YR+F + VK +D A + ++ RRF + ++ +++ + E F +PD+++ Sbjct: 427 KDYRRFKIKT--VKGPNDYASLEEIITRRFKRGLEETQDIIEQSLEVSEGKFAIFPDLIM 484 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 +DGG GQ+++ + L LN+ I + + K + V +GE L + + Sbjct: 485 VDGGFGQVTSVKKALHSLNL--NIPVCGMIKDDRHRTKG---LVYEGEELSIEKTSHLFR 539 Query: 529 FIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 I +++DE HRFAIT HR RKK S L+EI G+G R++ L+ FG++ I ++ E Sbjct: 540 LITKIQDEVHRFAITYHRSLRKKTTLQSILEEIPGVGEARRKALMIHFGSIDKIKNATVE 599 Query: 588 TLASIEGISKKIACKIYNHFHK 609 L ++G+++K+A I + +K Sbjct: 600 ELLEVQGMNRKVAENIVEYLNK 621 >gi|117925176|ref|YP_865793.1| excinuclease ABC subunit C [Magnetococcus sp. MC-1] gi|117608932|gb|ABK44387.1| Excinuclease ABC subunit C [Magnetococcus sp. MC-1] Length = 617 Score = 536 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 243/615 (39%), Positives = 350/615 (56%), Gaps = 23/615 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 +Q+P PGVY+ D AG++LYVGKA L+KR+ SY + H+ + M+ QI + F Sbjct: 18 DVKQLPLKPGVYRFYDDAGQLLYVGKAKALRKRVSSYFNHLAGHSPKTVVMVKQIMRLEF 77 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T T E +AL+LEAN+IK +PR+N+LL+D+KS+PY+ +T H P L +R +G Sbjct: 78 TTTANENDALVLEANLIKAHQPRYNVLLKDNKSYPYLHLTTDHAYPRLALYRGDRKARGR 137 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 +FGP+ S AV +T+N LQ+ F +R C DS F HR+RPCL +QI RC GPC I Y Sbjct: 138 FFGPYPSAHAVRETLNWLQKIFPVRQCEDSQFNHRSRPCLQYQIHRCGGPCCDRIDVTSY 197 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 V + FL G + L + M QA D+E A RDR+A + H+Q + Sbjct: 198 GAMVSQVTLFLEGKDKQLVNTLKEAMWQAAQARDFEGAARLRDRIAGIEHVQERRRLNLS 257 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 +D S+ A +Q F G N G FFL+ E ++IL F+ QFY DK Sbjct: 258 GEIDLDVMSVAVGLKKAVVQVFFIRAGINLGNRAFFLERGEEDDPSEILQAFVSQFYLDK 317 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P P ILL ++ +LE + + G VK+ P++GE+R+++E A+ NA ++ Q S Sbjct: 318 PPPPEILLEHLPQQQEMLEEALSARLGKAVKLRQPQRGERRRLLEMAVENAQQALKQYQS 377 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + + L+ + F L P+RIEIYDNSHI AVG MVV G +GF KNQYRKFNL Sbjct: 378 SRDHVRTQLEALQELFNLAEPPQRIEIYDNSHIQDQHAVGAMVVFGADGFEKNQYRKFNL 437 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + DD A M VL RRF +L + E WPD+V+LDGG QL+ Sbjct: 438 EAS--SAPDDTARMIEVLTRRFKRLKEGE--------------GRWPDLVLLDGGIAQLN 481 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYFIQRLRDE 536 AA V+++L ++ + +IAKGP+R AG E+ F + L+L P+L+F+Q +RDE Sbjct: 482 AAMKVVEELQIDG-VAFSAIAKGPQRHAGREQLFLPDRPNPLILPHDAPLLHFLQVVRDE 540 Query: 537 AHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 +HRF I HR RR K S LD I G+G RK+ L++ FG+VK + +++ +A++ G Sbjct: 541 SHRFVIGYHRTRRAKGQTSSRLDGIAGVGAQRKKALIKQFGSVKGVRQATLAEIAALPGF 600 Query: 596 SKKIACKIYNHFHKN 610 S ++A I ++ Sbjct: 601 STELAATILATLDEH 615 >gi|302382202|ref|YP_003818025.1| excinuclease ABC, C subunit [Brevundimonas subvibrioides ATCC 15264] gi|302192830|gb|ADL00402.1| excinuclease ABC, C subunit [Brevundimonas subvibrioides ATCC 15264] Length = 632 Score = 536 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 273/619 (44%), Positives = 372/619 (60%), Gaps = 18/619 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + + P+ PGVY+M G LYVGKA +++KRI Y HT RI M+S ++ Sbjct: 21 EARRAPDKPGVYRMYGEDGTCLYVGKARSIKKRILQYAQGRFHTQRIGLMVSLTRSMELV 80 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT +E EALLLE+N IK+LKPRFN++LRDDKSF ++I H+ P + KHR S T G Y Sbjct: 81 VTASETEALLLESNFIKKLKPRFNVVLRDDKSFAELMIRKDHRAPQVRKHRGSHTTPGDY 140 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPFAS AV +T+N+LQ+ F LRSC+DSV+ RTRPC+L QIKRCS PCTG IS E Y Sbjct: 141 FGPFASTWAVNRTLNTLQKAFLLRSCSDSVYETRTRPCMLHQIKRCSAPCTGLISLEDYA 200 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 V EA FL G + + +++ M A D+E A RDR+ ALS I N + Sbjct: 201 GLVEEASLFLRGKSRAVISRLSGEMTAAAEAMDFEQAARVRDRIRALSAIAMENSVSADS 260 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D +++ AC+Q F+ GQN G +F + D T+A+ILS FL QFY DKP Sbjct: 261 VAEADVLAVFSEGGQACVQVFFYRGGQNWGGRAYFPRVDKSDTDAEILSAFLGQFYEDKP 320 Query: 299 CPENILLSEEAEETSLLEISFFK-----QYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 P IL + E LLE +F V I P +G+K +++ AL NA + Sbjct: 321 VPRLILSNVVPFEKELLEEAFSMKAREVDGRRVVSIERPLRGDKHALVDHALTNAREALG 380 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 +K++ + IL + + F L P+RIE+YDN+HI G +AVG M+V G GF K+QYR Sbjct: 381 RKMAEGSAQGKILAEVCEAFGLDGTPERIEVYDNAHIQGTNAVGGMIVAGPEGFQKSQYR 440 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 KFN+ D+ DD MMR V+ RRFS+L+K+EE + PD++++DGG Sbjct: 441 KFNIRGVDLTPGDDYGMMREVMRRRFSRLVKDEEEGAEEVVR--------PDLLLIDGGA 492 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 GQL+ Q VL L +++ I + +AKGP R AGME+FFV +L ++ P LY+IQRL Sbjct: 493 GQLAEVQAVLADLGLDD-ILAVGVAKGPDRDAGMERFFVPGKPPFMLPLKSPALYYIQRL 551 Query: 534 RDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDEAHRFA HR RR +PLDEI G+GP RK+ LL +FG+ K + R++ L + Sbjct: 552 RDEAHRFANGAHRTRRSMDIKKNPLDEIEGVGPGRKKALLHAFGSAKGVGRAAVVDLEKV 611 Query: 593 EGISKKIACKIYNHFHKNT 611 +GI++ +A +IY FH T Sbjct: 612 DGINRALAERIYGFFHPQT 630 >gi|157961777|ref|YP_001501811.1| excinuclease ABC subunit C [Shewanella pealeana ATCC 700345] gi|189038093|sp|A8H3Y9|UVRC_SHEPA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|157846777|gb|ABV87276.1| excinuclease ABC, C subunit [Shewanella pealeana ATCC 700345] Length = 609 Score = 536 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 206/616 (33%), Positives = 326/616 (52%), Gaps = 28/616 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D V+YVGKA +L+KR+ SY N + ++S I NI TV Sbjct: 11 LKTVTSSPGVYRMYDAKDAVIYVGKAKDLKKRLSSYFRKNLANVKTQALVSHIANIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E +AL+LE + IK+ P++N+LLRDDKS+PYIL+++ H+ P L HR +G YF Sbjct: 71 THSETDALILENDYIKQYMPKYNVLLRDDKSYPYILLSN-HQHPRLAYHRGPKRDKGQYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + AV ++++ +Q+ F +R C D ++ R+RPCL +QI RCS PC +S E Y E Sbjct: 130 GPYPNGGAVRESLHLMQKIFPIRQCDDLYYKSRSRPCLQYQIGRCSAPCVDLVSEEDYQE 189 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YN 240 V A FL G N + + + M QA+ YE A ++RD++ AL + + Sbjct: 190 QVRLATLFLKGKNQQVMSVLVQKMEQASSDMRYEQAALYRDQITALRRVSEQQEVSNASG 249 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC- 299 MD Y+ +AC F G+ G+ +++ K + +++L F+ QFY + Sbjct: 250 DMDVIGAYYASGVACFHLLFIREGKIFGSRSYYPKVPVNTEVSEVLRSFMLQFYLNSDSQ 309 Query: 300 ---PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P+ IL+S+ EE + L + KV+I +GE+ + AL NA + +L Sbjct: 310 RLTPKEILISDAFEEQAELADAIQSAQNKKVEIKTQVRGERASFLRLALTNATNAVNTRL 369 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 S + + + + + +R+E +D SH MG S V VV G K YR++N Sbjct: 370 SHKNTIEQRFLLLEEAIESTNKIQRMECFDISHTMGESTVASCVVFNREGPSKADYRRYN 429 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + DD A M+ + RRF ++ + + PD++ +DGG GQL Sbjct: 430 I--TGITPGDDYAAMKQAITRRFDKITEKGK---------------IPDILFIDGGIGQL 472 Query: 477 SAAQGVLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRL 533 AQ V+ + + ++N T+I +AKG R G+E + E L L+ IQ + Sbjct: 473 RIAQKVVDEQFVALDNAPTLIGVAKGEGRKPGLETLIYGESEESFSLPADSGALHLIQHI 532 Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDE+HRFAIT HR +R+K S L+ I G+GP R++ LLQ G ++ + +S LA + Sbjct: 533 RDESHRFAITGHRNKRQKTRNTSTLETIAGVGPKRRKALLQYLGGLQEVKGASVSELAKV 592 Query: 593 EGISKKIACKIYNHFH 608 GIS ++A I++ Sbjct: 593 PGISLEMAQTIHDALR 608 >gi|291300464|ref|YP_003511742.1| excinuclease ABC subunit C [Stackebrandtia nassauensis DSM 44728] gi|290569684|gb|ADD42649.1| excinuclease ABC, C subunit [Stackebrandtia nassauensis DSM 44728] Length = 708 Score = 536 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 198/629 (31%), Positives = 313/629 (49%), Gaps = 30/629 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFTVT 63 +PE PGVY+ D GRV+YVGKA +L++R+ SY R M+ ++ + V Sbjct: 27 TIPESPGVYRFRDTDGRVIYVGKAKSLRQRLNSYFADPTKLHPRTYQMVHTATSVDWVVL 86 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE IK+ PRFN++ RDDKS+PY+ +T + P L R YFG Sbjct: 87 ATEVEALQLEYTWIKKYDPRFNVMYRDDKSYPYLAVTLDEEYPRLQVMRGDRRKGVRYFG 146 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F R+C SVF R RPCLL I +C+ PC G +S+ ++ Sbjct: 147 PYSHAWAIRETLDLLLRVFPARTCGASVFNRARKINRPCLLGDIGKCAAPCVGRVSAAEH 206 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 E V E F++G +++ M++A+ D+E A RD LAAL + Sbjct: 207 REIVDEFCAFMAGKTDTFVKRVEAEMHEASEALDFERAARRRDDLAALHRALEKQLVVLA 266 Query: 240 ----NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY- 294 +D ++ ++ A +Q G+ G + + T+ ++ QFY Sbjct: 267 EDKGTDIDVVEMFDDELQAAVQVFHVRGGRVTGQRGWIVDKPEGVTDGDLVHSLCTQFYG 326 Query: 295 --TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 + K P+ +L+ E+ + L + G KV + +P++G+K+ + E NA ++ Sbjct: 327 GRSGKDIPKEVLVPALPEDATALTDWLSELRGSKVGVRIPQRGDKKALAETVKRNAEQAL 386 Query: 353 TQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 Q S L++ + LP P RIE +D S + G V MVV + Sbjct: 387 VQHKLKRASDLTTRGKALEELAEALDLPGAPLRIECFDVSQMQGTDVVASMVVFEDGLPR 446 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 K +YR+F + DD A M VL RR S++ +E ++ F P +++ Sbjct: 447 KAEYRRFVVRGERT---DDLASMHEVLTRRLSKV--DESAPLIDEDGKKRRFAYPPQLLV 501 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 +DGG Q++ A VL + ++ + + +AK + E + + ++L R LY Sbjct: 502 VDGGAPQVAVADNVLAEQGIDT-VNVCGLAKRLE-----EVWLPGEEYPVILPRRSEALY 555 Query: 529 FIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 +QR+RDEAHRFAI+ HRKRR KK S LD + G+GP R++ LL+ FG+VK I ++ + Sbjct: 556 LLQRVRDEAHRFAISLHRKRRGKKVTASALDSVPGLGPTRRKALLRHFGSVKKIREATVD 615 Query: 588 TLASIEGISKKIACKIYNHFHKNTSHTPT 616 +A + GI +A I TPT Sbjct: 616 EIAEVTGIGPALAATITASL--TEGATPT 642 >gi|119716752|ref|YP_923717.1| excinuclease ABC subunit C [Nocardioides sp. JS614] gi|119537413|gb|ABL82030.1| Excinuclease ABC subunit C [Nocardioides sp. JS614] Length = 666 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 197/639 (30%), Positives = 316/639 (49%), Gaps = 34/639 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 +P PGVY+ D GRV+YVGKA NL+ R+ SY + R M++ ++ + Sbjct: 19 QPGSIPTQPGVYRFRDARGRVIYVGKAKNLRARLSSYFQDVAHLHPRTATMVTTAASVEW 78 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TEVEAL LE + IK PRFN+ RDDKS+P++ +T + P + R + Sbjct: 79 TVVKTEVEALQLEYSWIKEFDPRFNVKYRDDKSYPWLAVTVGEEFPRVMVGRGAKRKGTR 138 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP++ A+ +T++ L R F +RSC++ VF+ RPCLL I +C+ PC G +++ Sbjct: 139 YFGPYSHAWAIRETVDLLLRVFPMRSCSNGVFKRSAQIGRPCLLGYIDKCAAPCVGNVTA 198 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E++ V + F++G ++I R M A+ D+E A RD L AL+ Sbjct: 199 EEHRAIVDDFCDFMAGHTTAFVKRIEREMYAASDALDFEKAARLRDDLGALNKALEKQAV 258 Query: 238 IYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D +L + +Q + G+ RG + E A+++ FL Q Y Sbjct: 259 VLGDGTDADVIALAEDPLEVAVQIFYVRGGRIRGQRGWVADRVDEGGTAELVDDFLLQLY 318 Query: 295 TDK---PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 P IL+ + + E G KV I VP++G+KR + E NA ++ Sbjct: 319 AGAGADEIPREILVPALPPDVATYESLLGDLRGSKVAIRVPQRGDKRNLQETVAQNAGQA 378 Query: 352 HTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 + S L++ L +P RIE YD S++ G V MVV + Sbjct: 379 LALHKTKRASDLTTRNRALEEIQDALGLDEVPLRIECYDVSNLQGTEVVASMVVFEDGLA 438 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEEN-----------LNFHPKKQ 456 K++YR+F + V Q+D A M V+ RRF +L+ + L + Sbjct: 439 RKSEYRRFVIRG--VDGQNDVASMDEVITRRFRRLLDEQGTSQSVVTESGPMLVDPETGR 496 Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE 516 F P +V++DGG Q++AAQ L +L + + I + +AK + E + + + Sbjct: 497 PRKFAYAPGLVVVDGGPPQVAAAQRALSELGIVD-IPVCGLAKRLE-----EVWLPGQED 550 Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSF 575 ++L LY +QR+RDEAHRFAIT HR RR K+ S LD++ G+G +R++ LL+ F Sbjct: 551 PVILPRSSEGLYLLQRIRDEAHRFAITHHRSRRSKSMVESLLDDVPGLGEVRRKTLLKHF 610 Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 G++K + ++ + +A + GI + A I + + + T Sbjct: 611 GSLKRLRAATVDEIALVPGIGPRTAGAIKDALARTSRET 649 >gi|212709568|ref|ZP_03317696.1| hypothetical protein PROVALCAL_00610 [Providencia alcalifaciens DSM 30120] gi|212687906|gb|EEB47434.1| hypothetical protein PROVALCAL_00610 [Providencia alcalifaciens DSM 30120] Length = 610 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 213/619 (34%), Positives = 335/619 (54%), Gaps = 31/619 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY N + + ++ I +I TV Sbjct: 11 LKTVTNQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRENLGSRKTEQLVKNIASIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+PYI ++ P + HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLS-SETHPRISSHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF S AV +T+ +Q+ F +R C DSV+R+R+RPCL +QI RC GPC ++ E+Y Sbjct: 130 GPFPSSYAVRETLALMQKLFPIRQCEDSVYRNRSRPCLQYQIGRCLGPCVKGLVTDEEYE 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--Y 239 + V+ + FL+G + + + M +A+ + +E A RD++ A+ + Sbjct: 190 QQVNYVRLFLTGKDKQVLTGLVERMEKASQELRFEDAARFRDQIQAVRAVTEEQYVSGGD 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295 + +D + + LAC+ F G+ G+ +++ K + + +++ FL QFY Sbjct: 250 DDLDVIGVAFDSGLACVHVLFIRQGKVLGSRSYYPKIPAGTLLEEVVQTFLGQFYLQGSE 309 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ P ILL E LL S G K++I +G + + ++ A NA + + K Sbjct: 310 NRTLPGEILLDFPLTEKELLAESLSDIAGRKIQIQSQPRGTRARYLKLARTNASIALSTK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L+ + + Q + +K + +I R+E +D SH MG V VV + G VK++YR++ Sbjct: 370 LAQQSTIQQRMAALSKVVNIDNIS-RMECFDISHTMGEQTVASCVVFDKTGPVKSEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + + + PD++ +DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMHQVLTRRYGKHLDESK---------------VPDIIFIDGGKGQ 471 Query: 476 LSAAQGVLKKLNVE---NRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L A+ V L V+ N +I +AKG R AG+E F+ +GE L P L+ IQ Sbjct: 472 LGQAKDVFDSLEVDWDKNHPLLIGVAKGSDRKAGLETLFLKPEGEGFALPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AIT HR+RR K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHNHAITGHRQRRAKVKNTSALESIEGVGPKRRQMLLKYMGGLQPLRNASVEEIA 591 Query: 591 SIEGISKKIACKIYNHFHK 609 + IS +A KIYN + Sbjct: 592 KVPSISYALAEKIYNALKQ 610 >gi|296445664|ref|ZP_06887619.1| excinuclease ABC, C subunit [Methylosinus trichosporium OB3b] gi|296256909|gb|EFH03981.1| excinuclease ABC, C subunit [Methylosinus trichosporium OB3b] Length = 668 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 276/619 (44%), Positives = 385/619 (62%), Gaps = 12/619 (1%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + P PGVY+M+ G VLYVGKA N++KRI SY H +RI MIS ++ F Sbjct: 51 KNAPNGPGVYRMIAGNGEVLYVGKAKNVRKRIASYTRLAGHVNRIARMISATASMMFISV 110 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLE N+IK++KPRFN+L+RDDKSFPYILI H P + KHR + +G YFG Sbjct: 111 DTETEALLLETNLIKQMKPRFNVLMRDDKSFPYILIARDHAAPQIAKHRGARARKGDYFG 170 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFA+ AV + +N+LQR F LRSC DS + +RTRPCLL+QIKRC+GPCTGEIS + Y Sbjct: 171 PFANAGAVGRALNALQRAFLLRSCTDSFYENRTRPCLLYQIKRCAGPCTGEISIDDYAAL 230 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--- 240 V EA FL+G + +++E +A+ M +A + ++E A RDR++ALS IQ Sbjct: 231 VQEAHDFLTGKSRSVRESLAKEMTEAAERLEFERAARLRDRISALSLIQGTQGVNPRSVE 290 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F++ CI+ FF QN G +F + D ++L F+ QFY + P Sbjct: 291 EADVFAIAKEAGRFCIEAFFFRAFQNWGDRAYFPRADQSLGEEEVLGSFVAQFYGEHPPA 350 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 +LLS E+ +L + + G KV++ P++GEKR++++ AL NA ++ T+KL+ + Sbjct: 351 PLVLLSHVIEDRDILAEALTDKLGRKVEVATPQRGEKRELVDNALTNAKQTLTRKLTEDA 410 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S + +L + F + P+R+E+YDNSH G A+G M+V G GF+K YR FN+ Sbjct: 411 SQEKLLVALGEMFGMATPPRRVEVYDNSHTGGQQAIGAMIVAGPTGFMKTHYRTFNIKGA 470 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFH-------PKKQEYSFPSWPDVVILDGGK 473 ++ DD AMMR VL RRF+++ K++E + ++ +FPS PD+V++DGG+ Sbjct: 471 EITPGDDYAMMREVLRRRFARIAKDDEKKDAEKKDGETAAEEASDAFPSKPDLVLIDGGR 530 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 GQ AA+ V ++ +E + I SIAKG R+AG E FFV+ E L DP LYF+QRL Sbjct: 531 GQFDAARAVAAEIGLEGVV-IASIAKGADRNAGRETFFVEGREPFRLPPHDPALYFVQRL 589 Query: 534 RDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDEAHRFAI THR RRKK A +PLDEI GIGP RKR LL +FGT K ++ ++ L Sbjct: 590 RDEAHRFAIGTHRARRKKEFAKNPLDEIAGIGPSRKRALLLAFGTAKAVAGAALCDLEKA 649 Query: 593 EGISKKIACKIYNHFHKNT 611 GI+K A +Y+HF + Sbjct: 650 PGINKATARLVYDHFQRGE 668 >gi|157145295|ref|YP_001452614.1| excinuclease ABC subunit C [Citrobacter koseri ATCC BAA-895] gi|189038036|sp|A8AFB5|UVRC_CITK8 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|157082500|gb|ABV12178.1| hypothetical protein CKO_01032 [Citrobacter koseri ATCC BAA-895] Length = 610 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 210/618 (33%), Positives = 336/618 (54%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S ++Y Sbjct: 130 GPFPNGYAVRETLALLQKVFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEDEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M +A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + + +++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPNGTELGEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G ++ + +G++ + ++ A NA + K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRINVQTKPRGDRARYLKLARTNAATALISK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP + R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTITQRLTALASVLKLPAVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I+ + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L A+ V +L+V +N ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LGQAKAVFAELDVPWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI+ HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAISGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIYNHFH 608 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIFYSLK 609 >gi|312116178|ref|YP_004013774.1| excinuclease ABC, C subunit [Rhodomicrobium vannielii ATCC 17100] gi|311221307|gb|ADP72675.1| excinuclease ABC, C subunit [Rhodomicrobium vannielii ATCC 17100] Length = 689 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 283/653 (43%), Positives = 386/653 (59%), Gaps = 49/653 (7%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + + PGVY+M+D+AG V+YVGKA NL+ R+++Y HT+RI MI + F T Sbjct: 35 KHLGTGPGVYRMVDLAGEVIYVGKARNLKNRVQNYTRMGGHTNRIAAMIRATATMEFVNT 94 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKR KPR+N+ RDDKSFPYI+I + + KHR + T++G YFG Sbjct: 95 RTEAEALLLEANLIKRFKPRYNVSFRDDKSFPYIVIRRDQEAAQIAKHRGARTVKGDYFG 154 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TIN+LQR F LR+CADSV+ RTRPCLLFQIKRC+GPCT EI + Y + Sbjct: 155 PFASAGAVNRTINTLQRAFLLRTCADSVYDSRTRPCLLFQIKRCAGPCTREIPLDDYSKL 214 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EA FLSG ++ K+ M +A ++E A +R+RL AL+H+Q H Sbjct: 215 VDEATAFLSGKTDAVQRKLNTLMEEAAEALEFERAAKYRNRLWALAHVQAHQGINPKGVE 274 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F++ CI+ FF GQN G +F + D + A++L F+ QFY DK P Sbjct: 275 EADVFAIAQQGGQTCIEVFFFRSGQNWGNRAYFPRADKSLSPAEVLGSFISQFYDDKLVP 334 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + LSEE E SL+ + + G KV + P++GEKR++++ A NA + +KL+ Sbjct: 335 RCVFLSEEVPEQSLISEALSTKLGRKVDVVTPRRGEKRELVDYAHQNAREALGRKLAETT 394 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S+ +L + F L +P+RIE+YDNSHIMG +AVG M+V G GF KN YRKFN+ Sbjct: 395 SNARLLAGVAQVFGLERVPRRIEVYDNSHIMGTNAVGGMIVAGPEGFAKNHYRKFNIRTA 454 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNE---------------------------------- 446 D+ DD MMR VL RRF +L+K Sbjct: 455 DLTPGDDFGMMREVLTRRFKRLLKEHGLPAGETAASGDTPPEAAVAAAEAGAVAAVDTSS 514 Query: 447 ----------ENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIIS 496 E N Q +WPD++++DGG GQLSAA+ VL +L + + I Sbjct: 515 LSPPVEEEYTEEENGDAAAQGGDLGAWPDLLLIDGGAGQLSAAREVLAELGLHG-LAIAG 573 Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYS 555 IAKGP R+AG E+FF+ L + DP+LYF+QRLRDEAHRFAI +HR +RKK + Sbjct: 574 IAKGPDRNAGRERFFMPGKPPFSLPLNDPVLYFVQRLRDEAHRFAIGSHRAKRKKAMTEN 633 Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 LD I GIGP RKR LL+ FG+ K +SR+ L +++GIS +A +IY+ ++ Sbjct: 634 ELDGIPGIGPTRKRALLKHFGSAKAVSRAGLSDLRAVDGISAAMAQQIYDWYN 686 >gi|125975219|ref|YP_001039129.1| excinuclease ABC subunit C [Clostridium thermocellum ATCC 27405] gi|256003119|ref|ZP_05428111.1| excinuclease ABC, C subunit [Clostridium thermocellum DSM 2360] gi|281419193|ref|ZP_06250209.1| excinuclease ABC, C subunit [Clostridium thermocellum JW20] gi|189038042|sp|A3DJ07|UVRC_CLOTH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|125715444|gb|ABN53936.1| Excinuclease ABC subunit C [Clostridium thermocellum ATCC 27405] gi|255992810|gb|EEU02900.1| excinuclease ABC, C subunit [Clostridium thermocellum DSM 2360] gi|281407059|gb|EFB37321.1| excinuclease ABC, C subunit [Clostridium thermocellum JW20] gi|316939383|gb|ADU73417.1| excinuclease ABC, C subunit [Clostridium thermocellum DSM 1313] Length = 625 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 200/626 (31%), Positives = 335/626 (53%), Gaps = 23/626 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 +++P+ PGVY M D G ++YVGKA L+ R++ Y S +N T ++ M++ I + Sbjct: 7 ELKKLPDKPGVYIMKDENGEIIYVGKAVVLKNRVRQYFQSLSNQTPKVRAMVAHIKEFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT TE+EAL+LE N+IK+ +P+FNILL+DDK++PYI +T P + R Sbjct: 67 IVTDTELEALILECNLIKKHRPKFNILLKDDKNYPYIKVTMNEDFPRILMTRRVEKDGAK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV +TI+ +++ F +++C+ + R + RPCL + I +C GPC G +S E Sbjct: 127 YFGPYTSAYAVRETIDLVKKLFPVKTCSKVLPRDIGKGRPCLNYHIYQCLGPCQGNVSKE 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + + FL G ++ +K+ ++M +A ++E A RD++ +L HI I Sbjct: 187 EYRFMMQDVCNFLGGRQEDIIKKLEKDMKEAADNLEFERAARIRDKINSLKHIAEKQKII 246 Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D + ++ +CIQ F G+ G F L+ S+ +++++++ F++QFY+ Sbjct: 247 STAMEDQDVIAFAKSETDSCIQVFFIRGGKLIGREHFILEGTSDVSDSELMTAFVKQFYS 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P I+L E+ +E ++E + G K I VP++GEK K++E NA Q Sbjct: 307 SAAYVPGQIILQEDIDEMEIIEKWLSGKRGTKTYIKVPRRGEKLKLVEMVSKNALIELNQ 366 Query: 355 KLSTEISHQMI----LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + ++ + L +P+RIE YD S+ VG MVV K+ Sbjct: 367 FKERIKKEAALAKEGMEKLKELLNLDRLPRRIEAYDISNTGSTEIVGSMVVFENGSPKKS 426 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN----EENLNFHPKKQEYSFPSWPDV 466 YR+F + +V Q+D M+ V+ RR + K +E ++ F + PDV Sbjct: 427 DYRRFKIKSINV--QNDYQSMQEVIFRRLKRAQKEMTEKDEGGGKDVGEKGAGFGTLPDV 484 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526 +++DGG G ++A + VL++L+ I + + K V L+ + Sbjct: 485 LLVDGGTGHVNAVRSVLEELDF--NIPVYGMVKDDNHRTRG---LVTGEREFDLSKDIVL 539 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 L F+ ++DEAHRFA+ +RK R K + S LD I G+GP RK+ L++ FG+VK I + Sbjct: 540 LRFVTAIQDEAHRFALEYNRKLRAKRYSGSVLDNIEGVGPKRKKELIRHFGSVKAIKEAE 599 Query: 586 PETLASIEGISKKIACKIYNHFHKNT 611 P +A ++GIS+ +A KIY++F + Sbjct: 600 PGEIAKVKGISRDLAQKIYDYFRQQE 625 >gi|117620499|ref|YP_857278.1| excinuclease ABC, C subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561906|gb|ABK38854.1| excinuclease ABC, C subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 616 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 207/614 (33%), Positives = 337/614 (54%), Gaps = 31/614 (5%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 GVY+M D G V+YVGKA +L+KR+ SY +N + + ++ QI +++ TVT TE Sbjct: 19 HQSGVYRMYDSGGTVIYVGKAKDLKKRLASYFRANVDSIKTRTLVRQIADVQVTVTHTET 78 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EAL+LE N+IK+ +PR+N+LLRDDKS+P+I+IT H+ P + HR + ++G YFGP+ S Sbjct: 79 EALILEHNLIKQYQPRYNVLLRDDKSYPWIIIT-AHQHPRIGVHRGARKVKGEYFGPYPS 137 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHE 186 AV ++++ +Q+ F +R C D+V+ +R+RPCLL+Q+KRC+GPC +S +Y + V Sbjct: 138 GGAVRESLHLMQKIFPVRQCEDAVYANRSRPCLLYQLKRCAGPCVAGLVSEAEYAQQVEL 197 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNRMD 243 AK FL+G N + ++ M A+ +E A +RD++ AL + + +D Sbjct: 198 AKLFLAGKNQQVIGELVGKMESASGDLRFEEAARYRDQIQALRRVTEQQSVSGNVLDELD 257 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT----DKPC 299 + + ACI F G+ G+ ++F K +++ +++ FL QFY + Sbjct: 258 VVGVAFEQGTACIHVLFIRQGKVLGSRSYFPKVPADTQLDEVVQSFLLQFYLSGQGGRQI 317 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P +LL E+ +++ + + GYKV++ + E+ + I+ A INA + +L+ + Sbjct: 318 PSEVLLDVALEDENVIAETLSQTAGYKVRVVSRTRAERARFIKLASINAQTALRSRLAHK 377 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + + L R+E +D SH MG V VV G + ++YR+FN+ Sbjct: 378 STTTARYDQLEELLELERPIARMECFDISHTMGERTVASCVVFNREGPLSSEYRRFNI-- 435 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA- 478 + + DD A M LERRF + + ++ PDV+ +DGG GQL Sbjct: 436 DGITGGDDYAAMEQALERRFGKQQEPDK---------------VPDVLFIDGGLGQLRRA 480 Query: 479 --AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRD 535 + ++ IAKG R AG+E + + E L L P L+ IQ +RD Sbjct: 481 EEILARQLEFLGGKYPLLVGIAKGVTRKAGLETLILGESHEELHLPADMPALHLIQHIRD 540 Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E+HRFAIT HR RR KA S L++I G+GP R++ LL+ G ++ + ++ E LA + G Sbjct: 541 ESHRFAITGHRARRAKARTTSTLEDIPGVGPKRRQALLKYLGGLQEVKKAGVEELAKVPG 600 Query: 595 ISKKIACKIYNHFH 608 IS+++A I++ H Sbjct: 601 ISQELAQSIHDALH 614 >gi|300818664|ref|ZP_07098872.1| excinuclease ABC subunit C [Escherichia coli MS 107-1] gi|300528836|gb|EFK49898.1| excinuclease ABC subunit C [Escherichia coli MS 107-1] Length = 610 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 214/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + M++QI I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEAMVAQIQQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + ++++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G K+ + +G++ + ++ A NA + T K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP + R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I + + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V +N ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|304321236|ref|YP_003854879.1| excinuclease ABC subunit C [Parvularcula bermudensis HTCC2503] gi|303300138|gb|ADM09737.1| excinuclease ABC subunit C [Parvularcula bermudensis HTCC2503] Length = 650 Score = 535 bits (1378), Expect = e-149, Method: Composition-based stats. Identities = 274/632 (43%), Positives = 376/632 (59%), Gaps = 33/632 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 +++P PGVY+M++ G VLYVGKA +L+ R+ SY N H+ RI MI + + F Sbjct: 28 ELKRLPPRPGVYRMMNAEGDVLYVGKAKSLKARVASYATLNGHSTRIARMILETAAMEFV 87 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT TE E+LLLEAN+IK LKPR+N+LLRDDKSF ILI H+ P + KHR + T G Y Sbjct: 88 VTDTETESLLLEANLIKSLKPRYNVLLRDDKSFANILIATDHETPRIMKHRGAHTRPGHY 147 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPFAS AV +T+N+LQ+ F LRSC D+V R+RPCLL QIKRCS PC IS++ Y Sbjct: 148 FGPFASAGAVNRTLNTLQKAFLLRSCTDNVLESRSRPCLLHQIKRCSAPCVDLISTDDYS 207 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 V EA+ FL G N +++ ++R M A D+E A RDR+ AL+++Q + Sbjct: 208 ALVEEARAFLKGKNRDVQAALSRQMEDAAGDLDFERAAALRDRIRALTYVQESQGINISS 267 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F+++ + ACIQ+ FF GQN G + F + E A IL F+ QFY K Sbjct: 268 LEEADVFAIHADGGQACIQSFFFRAGQNLGALSHFPRHGQEEPPADILESFIAQFYDGKA 327 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P IL+SE E SLL + G++V + P++GEK ++I Q NA + ++LS Sbjct: 328 PPRLILVSERLENQSLLADALSTTAGHRVDVLRPERGEKAQLIVQTRNNAREALGRRLSE 387 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 S +L + L PKRIE+YDNSHI G +A+G MVV + GF KNQYR FN+ Sbjct: 388 TASQTKLLMAVQDQLDLSAPPKRIEVYDNSHISGTNAIGAMVVATDEGFRKNQYRTFNIK 447 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 D+ DD MMR VL+RRF +L+K E+ + + WP +V++DGG GQL+A Sbjct: 448 AEDISAGDDFGMMREVLDRRFKRLVKEEQPGSEN----------WPSLVVIDGGLGQLNA 497 Query: 479 AQGVLKKLNV-------ENRITIISIAK----------GPKRSAGM--EKFFVKKGEALV 519 A+ VL+ + I ++SIAK R+A E+FF+ Sbjct: 498 AKSVLEDHGLLIGGDIEAGEICLLSIAKGRRENERGERRADRTAAATGEQFFLPGQTPFT 557 Query: 520 LNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTV 578 L R +LY++QRLRDEAHRFAI THR +R + A +PLD+I GIG RK+ LL FG+ Sbjct: 558 LPPRSEVLYYLQRLRDEAHRFAIGTHRAKRSREATRTPLDDIEGIGAKRKKALLHHFGSA 617 Query: 579 KMISRSSPETLASIEGISKKIACKIYNHFHKN 610 K ++R+ + LA++EGIS +A +IY HFH Sbjct: 618 KAVARAKAKDLAAVEGISAALADRIYAHFHPE 649 >gi|330830187|ref|YP_004393139.1| UvrABC system protein C [Aeromonas veronii B565] gi|328805323|gb|AEB50522.1| UvrABC system protein C [Aeromonas veronii B565] Length = 617 Score = 535 bits (1377), Expect = e-149, Method: Composition-based stats. Identities = 210/614 (34%), Positives = 338/614 (55%), Gaps = 31/614 (5%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 GVY+M D G V+YVGKA +L+KR+ SY +N + + ++ QI +I+ TVT TE Sbjct: 20 HQSGVYRMYDSGGTVIYVGKAKDLKKRLASYFRTNVDSIKTRTLVRQIADIQVTVTHTET 79 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EAL+LE N+IK+ +PR+N+LLRDDKS+P+I+IT H+ P + HR + ++G YFGP+ S Sbjct: 80 EALILEHNLIKQYQPRYNVLLRDDKSYPWIIIT-AHQHPRIGVHRGARKVKGEYFGPYPS 138 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHE 186 AV ++++ +Q+ F +R C D+V+ +RTRPCLL+Q+KRC+GPC +S +Y + V Sbjct: 139 GGAVRESLHLMQKIFPVRQCEDAVYANRTRPCLLYQLKRCAGPCVAGLVSEAEYAQQVEL 198 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNRMD 243 AK FL+G N + ++ M A+ +E A +RD++ AL + + +D Sbjct: 199 AKLFLAGKNQQVIGELVGKMESASGDLRFEEAARYRDQILALRRVTEQQSVSGNVLDELD 258 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT----DKPC 299 + + ACI F G+ G+ ++F K +++ +++ FL QFY + Sbjct: 259 VVGVAFQQGAACIHVLFIRQGKVLGSRSYFPKVPADTQLDEVVQSFLLQFYLSGQGGRQI 318 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P +LL E+ S++ + + GYKV++ + E+ + I+ A INA + +L+ + Sbjct: 319 PSEVLLDVALEDESVIAETLSQTAGYKVRVVSRTRAERARFIKLASINAETALRSRLAHK 378 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + + L R+E +D SH MG V VV G + ++YR+FN+ Sbjct: 379 STITARYDQLEELLELERPIARMECFDISHTMGERTVASCVVFNREGPLSSEYRRFNI-- 436 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA- 478 + + DD A M LERRF + + ++ PDV+ +DGG GQL Sbjct: 437 DGITGGDDYAAMEQALERRFGKQQEPDK---------------VPDVLFIDGGLGQLRRA 481 Query: 479 --AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRD 535 + ++ IAKG R AG+E + + E L L P L+ IQ +RD Sbjct: 482 EEILARQLEFLGGKYPLLVGIAKGVTRKAGLETLIMGESHEELHLPADMPALHLIQHIRD 541 Query: 536 EAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E+HRFAIT HR RR KA S L++I G+GP R++ LL+ G ++ + ++S + LA + G Sbjct: 542 ESHRFAITGHRARRAKARTSSSLEDIPGVGPKRRQALLKYLGGLQEVKKASVDELAKVPG 601 Query: 595 ISKKIACKIYNHFH 608 IS+++A I++ H Sbjct: 602 ISQELAQTIHDGLH 615 >gi|257093161|ref|YP_003166802.1| excinuclease ABC subunit C [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045685|gb|ACV34873.1| excinuclease ABC, C subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 603 Score = 535 bits (1377), Expect = e-149, Method: Composition-based stats. Identities = 216/610 (35%), Positives = 322/610 (52%), Gaps = 25/610 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + E PGVY+MLD AG VLYVGKA NL+KR+ SY N+ + RI M++QI + TVT Sbjct: 13 TLTELPGVYRMLDRAGNVLYVGKAKNLRKRVASYFRENHASPRIALMVAQIARVETTVTR 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PYI+++ P L R ++ + YFGP Sbjct: 73 SEAEALLLENNLIKSLSPRYNILFRDDKSYPYIVLS-HDSAPRLGFFRGATDKRADYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV +I+ LQ+ F LR+C + VF +R+RPCLL QIKRCSGPC G I E+Y E V Sbjct: 132 FPSSSAVRDSIHLLQKMFRLRTCENPVFNNRSRPCLLHQIKRCSGPCVGLIEPERYAEDV 191 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 A FL G ++ +++ M++A K +E A ++RD++ +L +Q Sbjct: 192 QMAVMFLQGRQQDVIGRLSTAMDEAAEKLAFEQAAVYRDQIQSLRQVQEKQYVESGTDAD 251 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D + L C+ G++ G F ++S+ + L+ FL Q Y P P Sbjct: 252 VDIVAAVDGDGLICVNLAMVRGGRHLGDRPQFPANTADSSPHEALAAFLYQHYLAHPIPA 311 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 IL++ + + + G +++ + +R +E A +A + T + Sbjct: 312 RILVNLPLADGEV-AGWLSEMAGRPIRLGEARLTTQRVWVEMAEQSARLAITTRRVALSR 370 Query: 362 HQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 + L+ L RIE +D SH G + V VV G K++YR+FN+ Sbjct: 371 QEARLESLCSTLGLEAEEGMRIECFDISHTQGDATVAACVVYQGGGMRKSEYRRFNIRD- 429 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 V+ DD A MR ++RR+ +L+ P ++++DGG GQ+ A Sbjct: 430 -VQPGDDYAAMRQAVQRRYEKLV--------------SGSGVAPALILIDGGSGQVKVAA 474 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHR 539 L L +++ ++ +AKG R G+E E L L P L+ IQ +RDEAHR Sbjct: 475 AALADL-GLSQLPLLGVAKGEARKPGLETLVFADAREPLQLTPEHPALHLIQEIRDEAHR 533 Query: 540 FAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FA+T HR R K S L+ I GIGP R++ L+ FG ++ IS + + L ++ GIS++ Sbjct: 534 FAVTGHRASRGKTGRTSRLEGIVGIGPKRRKALIARFGGLQGISDAGVDQLTAVPGISRE 593 Query: 599 IACKIYNHFH 608 +A KIY H Sbjct: 594 LAEKIYASLH 603 >gi|296170712|ref|ZP_06852287.1| excision endonuclease subunit UvrC [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894701|gb|EFG74435.1| excision endonuclease subunit UvrC [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 650 Score = 535 bits (1377), Expect = e-149, Method: Composition-based stats. Identities = 190/637 (29%), Positives = 303/637 (47%), Gaps = 35/637 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA +L+ R+ SY R M++ + +TV Sbjct: 13 SIPVEPGVYRFRDTYGRVIYVGKAKSLRSRLTSYFADVAGLHPRTRQMVTTAAKVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE N IK PRFN+ RDDKS+P + +T + P L +R YFG Sbjct: 73 TTEVEALQLEYNWIKEFDPRFNVRYRDDKSYPVLAVTLNEEFPRLMVYRGPRRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRT---RPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F R+C+ VF+ RPCLL I +CS PC G +S+E++ Sbjct: 133 PYSHAWAIRETLDLLTRVFPARTCSAGVFKRHKQIDRPCLLGYIDKCSAPCVGRVSAEQH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + V + FLSG ++ + MN A + D+E A RD L AL + Sbjct: 193 RQIVDDFCDFLSGKTDRFARELEQRMNAAAEQLDFERAARLRDDLGALKRAMEKQAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTF---FLKTDSESTNAQILSYFLRQFY 294 D + ++ A +Q G+ RG + +S Q++ FL QFY Sbjct: 253 DGTDADVVAFADDELEAAVQVFHVRGGRVRGQRGWIVEKPGDPGDSGEEQLVEQFLTQFY 312 Query: 295 TD------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIE 342 + P P +L+ + L G KV + VP++G+KR + E Sbjct: 313 GEQAELGGAADESVNPVPREVLVPCLPSNSEELTSWLSALRGSKVALRVPRRGDKRALAE 372 Query: 343 QALINAHRSHTQKLSTEISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGC 398 NA + Q L++ + L P RIE D SH+ G VG Sbjct: 373 TVQRNAKEALQQHKLRRAGDFNARSAALQNIQEALGLADAPLRIECVDISHVQGTDVVGS 432 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLN-FHPKKQ 456 +VV + K+ YR F + + + DD A + V RRF++ + + + N + + Sbjct: 433 LVVFEDGLPRKSDYRHFGIREAAGQGRSDDVASIAEVTRRRFARHLSEQSDPNMLSAEGK 492 Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE 516 F P++ ++DGG Q++AA VL+ L + + + +I +AK + E + + + Sbjct: 493 SRRFAYPPNLYVVDGGAPQVNAASAVLEDLGISD-VAVIGLAKRLE-----EIWVPSEPD 546 Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSF 575 +++ LY +QR+RDEAHRFAIT HR +R K S LD + G+G R++ L+ F Sbjct: 547 PVIMPRNSEGLYLLQRIRDEAHRFAITYHRSKRSKRMTASALDSVPGLGEHRRKALVTHF 606 Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 G++ + ++ + + ++ GI A + +S Sbjct: 607 GSIARLKEATVDQITAVPGIGVATATAVLEALRPESS 643 >gi|300311266|ref|YP_003775358.1| excinuclease ABC subunit C [Herbaspirillum seropedicae SmR1] gi|300074051|gb|ADJ63450.1| excinuclease ABC subunit C (SOS response DNA repair protein) protein [Herbaspirillum seropedicae SmR1] Length = 621 Score = 535 bits (1377), Expect = e-149, Method: Composition-based stats. Identities = 219/619 (35%), Positives = 329/619 (53%), Gaps = 34/619 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P PGVY+ D VLYVGKA +L+KR+ SY + RI M+ +I + TVT Sbjct: 22 RLPHLPGVYRYFDAEDNVLYVGKARDLKKRVSSYFQKTLTSPRIAMMVERIARLETTVTR 81 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L+PRFNIL RDDKS+PY+ IT H P + +R + + YFGP Sbjct: 82 SEAEALLLENNLIKTLRPRFNILFRDDKSYPYLKIT-GHAFPRMAYYRGAVDKRNQYFGP 140 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F + AV+++I LQ+ F LR+C D+VF +RTRPCLL QI RCSGPC +S E Y V Sbjct: 141 FPNAGAVKESIQILQKVFLLRTCEDTVFSNRTRPCLLHQIHRCSGPCVNLVSREDYAIDV 200 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALS---HIQNHNDSIYNR 241 A KFL G + E + + M+ +E A RD++ +LS H Q+ Sbjct: 201 ENASKFLRGRQSEVMEALEQKMHAFAADLKFEQAAAVRDQIGSLSSVLHQQSMETVSDAD 260 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT-------DSESTNAQILSYFLRQFY 294 +D ++ AC+ G++ G +F +S + ++L FL Q Y Sbjct: 261 IDIIAVVVQGGRACVNLAMVRGGRHLGDRAYFPTHVDDAMDTAEDSIDVEVLKAFLAQHY 320 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 DK P ++++ E ++ +L+ +Q G+++ +T QG++R+ +E A A + + Sbjct: 321 IDKFIPGSLIVGTEFDDPALMMALM-EQCGHRITLTFQPQGQRRQWLEMAAKGAEIALAR 379 Query: 355 KLSTEISHQMILKDFTKKFALPHIP---KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 LS + S Q + L R E +D SH G + VV + + Sbjct: 380 LLSEQGSQQARTRALADVLELERDDLDELRAECFDISHTQGEATQASCVVFHHHAMQNGE 439 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YR++N++ + DD A MR VL RR+ ++ E PD+V++DG Sbjct: 440 YRRYNIND--ITPGDDYAAMRQVLTRRYEKVANGE--------------GVMPDIVLIDG 483 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFI 530 GKGQ+ A+ VL +L ++ + I+ +AKG R G+E G L L I Sbjct: 484 GKGQVETARQVLTELGLDISL-IVGVAKGEGRKVGLETLVFADGRAPKELGKESAALMLI 542 Query: 531 QRLRDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 ++RDEAHRFAIT R +R KA S L+EI GIG R++ LL FG ++ ++ +S + L Sbjct: 543 AQIRDEAHRFAITGMRAKRAKARQSSRLEEIEGIGAKRRQRLLVRFGGLRGVADASVDDL 602 Query: 590 ASIEGISKKIACKIYNHFH 608 AS+EGIS+++A +IY H Sbjct: 603 ASVEGISRQLAEEIYRQLH 621 >gi|71276086|ref|ZP_00652367.1| Excinuclease ABC, C subunit [Xylella fastidiosa Dixon] gi|71901641|ref|ZP_00683719.1| Excinuclease ABC, C subunit [Xylella fastidiosa Ann-1] gi|71163169|gb|EAO12890.1| Excinuclease ABC, C subunit [Xylella fastidiosa Dixon] gi|71728585|gb|EAO30738.1| Excinuclease ABC, C subunit [Xylella fastidiosa Ann-1] Length = 627 Score = 535 bits (1377), Expect = e-149, Method: Composition-based stats. Identities = 226/607 (37%), Positives = 338/607 (55%), Gaps = 19/607 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY+M +LYVGKA L+KR+ SY + R+T M++Q+ + T+T Sbjct: 23 HLSTAPGVYRMYAADDTLLYVGKAGALRKRVASYFNGTPKNTRLTAMLAQVVRMDVTITR 82 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 E EALLLE +IK L PR+N+LLRDDKS+PY+L+T P + HR + G YFGP Sbjct: 83 NEAEALLLENQLIKSLAPRYNVLLRDDKSYPYVLLT-SEAWPRIALHRGPQIVPGRYFGP 141 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + V AV +N + + F LRSC DSVFR+R+RPCL +QI RCS PC ++ + Y E V Sbjct: 142 YPGVTAVRDMLNLIHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSAPCVNVVTHDNYTEAV 201 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242 H FL G + L E++ + M A+ ++E A RD L +L +QN + Sbjct: 202 HRVTLFLEGKSDLLAEELIQAMQVASEHLEFEQAARLRDLLTSLRSMQNRQYVDGRAADL 261 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D + AC+ F G+N GT FF KT+ E A+ILS F+ Q+Y + P P Sbjct: 262 DVLACAALSGHACVLLLSFRDGRNLGTRMFFPKTNGEERTAEILSAFVSQYYAEYPPPPE 321 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 ILL +E + +LLE +F + +K+ + +GE+ +E A+ NA + + +L+++ + Sbjct: 322 ILLDQEIPDHTLLEAAFSRSSAHKISLRWNVRGERAGYVELAVRNAQVALSTELTSQRAQ 381 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 ++ + + L KR+E +D SH MG + V VV G V++QYR++N+ + Sbjct: 382 RVRSEAVRQLLGLEGPVKRVECFDISHTMGEATVASCVVFDAVGPVRSQYRRYNI--TGI 439 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD A MR +ERRF + ++ ++ PDV+ +DGG GQL+ A+ Sbjct: 440 TPGDDYAAMRQAIERRFRRAVEEDKQ------------GERPDVLFIDGGAGQLAQAKMA 487 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 L + VE + ++ ++KG +R AG E + G+ L P L FIQ++RDEAHRFAI Sbjct: 488 LNAVGVE-SVLLVGVSKGEERRAGHETLIMLDGQELHPGSASPALQFIQQVRDEAHRFAI 546 Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR+K S L++I GIG R+ LL+ FG + + + +A +EGIS +A Sbjct: 547 TGHRARRQKTRMTSKLEDIPGIGSRRRANLLKHFGGLAGVKAAGQTEIARVEGISTALAA 606 Query: 602 KIYNHFH 608 KIY H Sbjct: 607 KIYASLH 613 >gi|237731959|ref|ZP_04562440.1| excinuclease ABC subunit C [Citrobacter sp. 30_2] gi|226907498|gb|EEH93416.1| excinuclease ABC subunit C [Citrobacter sp. 30_2] Length = 610 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 213/618 (34%), Positives = 336/618 (54%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D AG V+YVGKA +L+KR+ SY SN + + +++QI I TV Sbjct: 11 LKTVTSQPGVYRMYDTAGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M +A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G K+ + +G++ + ++ A NA + T K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAVALTTK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP + R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTITQRLTALASVLKLPAVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I+ + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L A+ V +L+V + ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LGQAKAVFAELDVPWDKQHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI+ HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAISGHRKKRAKVKSTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASIEEIA 591 Query: 591 SIEGISKKIACKIYNHFH 608 + GIS+ +A KI+ Sbjct: 592 KVPGISQALAEKIFYSLK 609 >gi|170769376|ref|ZP_02903829.1| excinuclease ABC, C subunit [Escherichia albertii TW07627] gi|170121700|gb|EDS90631.1| excinuclease ABC, C subunit [Escherichia albertii TW07627] Length = 610 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 209/614 (34%), Positives = 333/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC + ++Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVGEDEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M +A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVITQLISRMEKASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 250 DDLDVIGVAFEAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G ++ + +G++ + ++ A NA + T K Sbjct: 310 MRTLPGEILLDFHLSDKTLLADSLSELAGRRINVQTKPRGDRARYLKLARTNAATALTSK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP + R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTVHQRLTALASVLKLPAVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I + + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V + ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKNVFAELDVSWDKKHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQALAEKIF 605 >gi|331683464|ref|ZP_08384065.1| excinuclease ABC subunit C [Escherichia coli H299] gi|331079679|gb|EGI50876.1| excinuclease ABC subunit C [Escherichia coli H299] Length = 610 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 213/614 (34%), Positives = 335/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + ++++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G K+ + +G++ + ++ A NA + T K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP + R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDESK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V +N ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|261344059|ref|ZP_05971704.1| excinuclease ABC subunit C [Providencia rustigianii DSM 4541] gi|282568451|gb|EFB73986.1| excinuclease ABC subunit C [Providencia rustigianii DSM 4541] Length = 610 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 214/619 (34%), Positives = 337/619 (54%), Gaps = 31/619 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY N + + ++ I +I TV Sbjct: 11 LKTVTNQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRENVSSRKTEQLVKHIASIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+PYI ++ K P + HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLS-KETHPRISLHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF S AV +T+ +Q+ F +R C DSV+++R+RPCL +QI RC GPC ++ E+Y Sbjct: 130 GPFPSSYAVRETLALMQKLFPIRQCEDSVYKNRSRPCLQYQIGRCLGPCVQGLVTDEEYD 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IY 239 + V+ + FL+G + + + M +A+ + +E A RD++ A+ + + Sbjct: 190 QQVNYVRLFLTGKDKQVLTGLVDRMEKASQELRFEDAARFRDQIQAVRAVTEEQYVSGDH 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295 + +D + LAC+ F G+ G+ +++ K S + +++ FL QFY Sbjct: 250 DDLDVIGVAFESGLACVHVLFIRQGKVLGSRSYYPKIPSGTLLDEVVQTFLGQFYLQGSE 309 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ P IL+ E LL S + G K+ I +G + + ++ A NA + + K Sbjct: 310 NRTLPGEILIDFPLTEKVLLADSLSELAGRKINIQSQPRGTRARYLKLARTNASIALSTK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L+ + + Q + +K + +I R+E +D SH MG V VV + G VK++YR++ Sbjct: 370 LAQQSTIQQRMAALSKVVNIENIS-RMECFDISHTMGEQTVASCVVFDKTGPVKSEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I + PD++ +DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMHQVLTRRYGKHIDESK---------------IPDIIFIDGGKGQ 471 Query: 476 LSAAQGVLKKLNVE---NRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L A+ V L+V+ N +I +AKG R AG+E F+ +GE L P L+ IQ Sbjct: 472 LGQAKDVFDSLDVDWDKNHPLLIGVAKGSDRKAGLETLFLKPEGEGFALPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AIT HR+RR K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHNHAITGHRQRRAKVKNTSALESIEGVGPKRRQMLLKYMGGLQPLRNASIEEIA 591 Query: 591 SIEGISKKIACKIYNHFHK 609 + IS +A KIYN + Sbjct: 592 KVPSISYALAEKIYNALKQ 610 >gi|238020185|ref|ZP_04600611.1| hypothetical protein GCWU000324_00060 [Kingella oralis ATCC 51147] gi|237868579|gb|EEP69583.1| hypothetical protein GCWU000324_00060 [Kingella oralis ATCC 51147] Length = 619 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 216/620 (34%), Positives = 333/620 (53%), Gaps = 28/620 (4%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + +P GVY+M+ G VLYVGKA NL++R+ SY N+H+ RI M+ Q+ I Sbjct: 15 IFLKSLPNSAGVYRMIAADGTVLYVGKAVNLKRRVSSYFQKNDHSLRIRLMLQQVARIEI 74 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T+T +E EAL+LE N+IK L P++NIL RDDKS+PY++I+ H P L +R S Sbjct: 75 TLTQSEAEALILENNLIKSLSPKYNILFRDDKSYPYLMIS-GHAYPQLAYYRGSLKKPNQ 133 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGP+ + AV +I LQ+ F LR+C DSVF HR RPCLL QIKRCS PC G +S+E+Y Sbjct: 134 YFGPYPNGYAVRDSIEILQKVFQLRTCEDSVFAHRDRPCLLAQIKRCSAPCVGAVSAEEY 193 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E V A FL+G +L + M+ A + D+E A RD++ AL+ +Q+ Sbjct: 194 AEQVRRATAFLNGRTADLTRDLEAAMHAAAEQLDFERAAQLRDQIQALAVMQSKQFIDSQ 253 Query: 241 RM-------DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST--NAQILSYFLR 291 D ++ + C+ G++ G +FF T + + F+ Sbjct: 254 NQHSKQQDIDIIAIAQAQGSICVHWVSIRGGRHVGDRSFFPDTRQDPSPNPQDYAEAFVA 313 Query: 292 QFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 Q Y KP P+ + + L+ + ++ ++ T ++GE++ + A+ NA + Sbjct: 314 QHYLGKPKPDVFITNFRLP--ESLQTALNSEHPRQIVFTQGERGERKVWLNMAVRNAEHA 371 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 +Q + Q + + LP +R+E +D SH G + + VV + + Sbjct: 372 LSQHQLQNSNQQERIAALAEIIGLPENELQRLECFDISHTQGEATLASCVVYDQYAMQPS 431 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 QYR++N+ K DD A MR VL RR+ ++ + EN +PD V++D Sbjct: 432 QYRRYNITTA--KAGDDYAAMREVLTRRYGKMQQARENGES---------VRFPDAVLID 480 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYF 529 GGKGQ+ A V +L + I ++ IAKG +R AG+E+ + + L P L+ Sbjct: 481 GGKGQVRMATEVWAELGLH--IPLVGIAKGVERKAGLEELILPFQNRQFRLPPNSPALHL 538 Query: 530 IQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 +Q +RDE+HRFAIT R +R K+ S L++I+GIG RK LL FG ++ + +S + Sbjct: 539 LQTVRDESHRFAITGMRAKRDKSRVTSSLNDIDGIGAKRKAALLTRFGGLRGVQAASIDD 598 Query: 589 LASIEGISKKIACKIYNHFH 608 LA +GIS+ +A KIY +FH Sbjct: 599 LAQTDGISRALAEKIYGYFH 618 >gi|323174573|gb|EFZ60194.1| excinuclease ABC, C subunit [Escherichia coli LT-68] Length = 610 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 212/614 (34%), Positives = 335/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + ++++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G K+ + +G++ + ++ A NA + T K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP + R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL R + + I + + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRSYGKAIDDSK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V +N ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|332968331|gb|EGK07402.1| excinuclease ABC subunit C [Kingella kingae ATCC 23330] Length = 653 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 216/619 (34%), Positives = 333/619 (53%), Gaps = 28/619 (4%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + +P GVY+M+ VLYVGKA NL++R+ SY ++H+ RI MI QI + Sbjct: 51 IFLKSLPNSSGVYRMIAADDSVLYVGKAVNLKRRVSSYFQKSDHSPRIQLMIKQIARVEI 110 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T+T +E EAL+LE N+IK L P++NIL RDDKS+PY++I+ H+ P L R + Sbjct: 111 TLTRSEAEALILENNLIKSLLPKYNILFRDDKSYPYLMIS-GHEFPKLAYFRGTPKKPNQ 169 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGP+ + AV +I LQ+ F LR+C DSVF HR RPCLL QIKRCS PC G +S + Y Sbjct: 170 YFGPYPNGYAVRDSIEILQKVFQLRTCEDSVFSHRDRPCLLAQIKRCSAPCVGSVSRDDY 229 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E V A FL+G +L + + + M QA D+E+A RD++ ALS IQ+ Sbjct: 230 AEQVRNAAAFLNGKTADLLKDLEKQMFQAADDLDFETAAKLRDQIQALSVIQSKQFIDSQ 289 Query: 241 ------RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQ 292 +D +L C+ G++ G +FF T + F+ Q Sbjct: 290 SVGNQADIDIVALAQANGGVCLHWVSIRGGRHVGDKSFFPDTRHDPNPNGQDYAEAFVAQ 349 Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 Y K P+ ++ + L+ + ++ ++ ++GE++ + A+ NA + Sbjct: 350 HYLGKMKPDVLICNFRLP--ESLQAALNSEHSRAIQFPKAEKGERKVWLNMAIQNAEHAL 407 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 +Q ++ Q + + LP +R+E +D SH G + + VV + +Q Sbjct: 408 SQHQLQNVNQQARVAALAEIVGLPESDLQRLECFDISHTQGEATMASCVVYDDFAMQPSQ 467 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YR++N++ T DD A MR VL RR+ ++ + + N +PD V++DG Sbjct: 468 YRRYNINS---VTNDDYAAMREVLTRRYGKMKEAQANGET---------VRFPDAVLIDG 515 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFI 530 G GQ+ A V ++L + I ++ IAKG +R AG+E+ + GE L P L+ + Sbjct: 516 GMGQIGVAVAVWEELGLT--IPLVGIAKGVERKAGLEELILPFSGERFRLPPNSPALHLL 573 Query: 531 QRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 Q +RDE+HRFAIT R +R KA S L++I+G+G RK LL FG ++ + +S + L Sbjct: 574 QTVRDESHRFAITGMRAKRDKARVTSSLNDIDGVGAKRKAALLMRFGGLRGVQAASVDDL 633 Query: 590 ASIEGISKKIACKIYNHFH 608 A EGIS+ +A KIY +FH Sbjct: 634 AQTEGISRALAEKIYGYFH 652 >gi|182681939|ref|YP_001830099.1| excinuclease ABC subunit C [Xylella fastidiosa M23] gi|229557877|sp|B2I637|UVRC_XYLF2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|182632049|gb|ACB92825.1| excinuclease ABC, C subunit [Xylella fastidiosa M23] gi|307578199|gb|ADN62168.1| excinuclease ABC subunit C [Xylella fastidiosa subsp. fastidiosa GB514] Length = 621 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 226/607 (37%), Positives = 339/607 (55%), Gaps = 19/607 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY+M +LYVGKA L+KR+ SY + R+T M++Q+ + T+T Sbjct: 17 HLSTAPGVYRMYAADDTLLYVGKAGALRKRVASYFNGTPKNTRLTAMLAQVVRMDVTITR 76 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 E EALLLE +IK L PR+N+LLRDDKS+PY+L+T + P + HR + G YFGP Sbjct: 77 NEAEALLLENQLIKSLTPRYNVLLRDDKSYPYVLLT-REAWPRIALHRGPQIVPGRYFGP 135 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + V AV +N + + F LRSC DSVFR+R+RPCL +QI RCS PC ++ + Y E V Sbjct: 136 YPGVTAVRDMLNLIHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSAPCVNVVTHDNYTEAV 195 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242 H FL G + L E++ + M A+ ++E A RD L +L +QN + Sbjct: 196 HRVTLFLEGKSDLLAEELIQAMQVASEHLEFEQAARLRDLLTSLRSMQNRQYVDGRAADL 255 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D + AC+ F G+N GT FF KT+ E A+ILS F+ Q+Y + P P Sbjct: 256 DVLACAALSGHACVLLLSFRDGRNLGTRMFFPKTNGEERTAEILSAFVSQYYAEYPPPPE 315 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 ILL +E + +LLE +F + +K+ + +GE+ +E A+ NA + + +L+++ + Sbjct: 316 ILLDQEIPDHTLLEAAFSRSSAHKISLRWNVRGERAGYVELAVRNAQVALSTELTSQRAQ 375 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 ++ + + L KR+E +D SH MG + V VV G V++QYR++N+ + Sbjct: 376 RVRSEAVRQLLGLEGPIKRVECFDISHTMGEATVASCVVFDAVGPVRSQYRRYNI--TGI 433 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD A MR +ERRF + ++ ++ PDV+ +DGG GQL+ A+ Sbjct: 434 TPGDDYAAMRQAIERRFRRAVEEDKQ------------GERPDVLFIDGGAGQLAQAKMA 481 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 L + VE + ++ ++KG +R AG E + G+ L P L FIQ++RDEAHRFAI Sbjct: 482 LNAVGVE-SVLLVGVSKGEERRAGHETLIMLDGQELHPGAASPALQFIQQVRDEAHRFAI 540 Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR+K S L++I GIG R+ LL+ FG + + + +A +EGIS +A Sbjct: 541 TGHRARRQKTRMTSKLEDIPGIGSRRRANLLKHFGGLAGVKAAGQTEIARVEGISTALAA 600 Query: 602 KIYNHFH 608 KIY H Sbjct: 601 KIYASLH 607 >gi|283832687|ref|ZP_06352428.1| excinuclease ABC subunit C [Citrobacter youngae ATCC 29220] gi|291072363|gb|EFE10472.1| excinuclease ABC subunit C [Citrobacter youngae ATCC 29220] Length = 610 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 213/618 (34%), Positives = 335/618 (54%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D AG V+YVGKA +L+KR+ SY SN + + +++QI I TV Sbjct: 11 LKTVTSQPGVYRMYDTAGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M +A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G K+ + +G++ + ++ A NA + T K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAVALTTK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP + R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTIAQRLTALASVLKLPAVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I+ + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L A+ V +L+V + ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LGQAKAVFAELDVTWDKQHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKSTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASIEEIA 591 Query: 591 SIEGISKKIACKIYNHFH 608 + GIS+ +A KI+ Sbjct: 592 KVPGISQALAEKIFYSLK 609 >gi|91211132|ref|YP_541118.1| excinuclease ABC subunit C [Escherichia coli UTI89] gi|237705868|ref|ZP_04536349.1| excinuclease ABC subunit C [Escherichia sp. 3_2_53FAA] gi|300935887|ref|ZP_07150844.1| excinuclease ABC subunit C [Escherichia coli MS 21-1] gi|119367648|sp|Q1RAM7|UVRC_ECOUT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|91072706|gb|ABE07587.1| excinuclease ABC subunit C [Escherichia coli UTI89] gi|226900625|gb|EEH86884.1| excinuclease ABC subunit C [Escherichia sp. 3_2_53FAA] gi|294490470|gb|ADE89226.1| excinuclease ABC, C subunit [Escherichia coli IHE3034] gi|300458937|gb|EFK22430.1| excinuclease ABC subunit C [Escherichia coli MS 21-1] gi|307626610|gb|ADN70914.1| excinuclease ABC subunit C [Escherichia coli UM146] gi|315286614|gb|EFU46047.1| excinuclease ABC subunit C [Escherichia coli MS 110-3] gi|323956310|gb|EGB52053.1| excinuclease ABC [Escherichia coli H263] Length = 610 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 214/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + ++++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G K+ + +G++ + ++ A NA + T K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP + R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I + + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V +N ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I GIGP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGIGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|170730446|ref|YP_001775879.1| excinuclease ABC subunit C [Xylella fastidiosa M12] gi|167965239|gb|ACA12249.1| excinuclease ABC subunit C [Xylella fastidiosa M12] Length = 627 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 226/607 (37%), Positives = 339/607 (55%), Gaps = 19/607 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY+M +LYVGKA L+KR+ SY + R+T M++Q+ + T+T Sbjct: 23 HLSTAPGVYRMYAADDTLLYVGKAGALRKRVASYFNGTPKNTRLTAMLAQVVRMDVTITR 82 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 E EALLLE +IK L PR+N+LLRDDKS+PY+L+T + P + HR + G YFGP Sbjct: 83 NEAEALLLENQLIKSLAPRYNVLLRDDKSYPYVLLT-REAWPRIALHRGPQIVPGRYFGP 141 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + V AV +N + + F LRSC DSVFR+R+RPCL +QI RCS PC ++ + Y E V Sbjct: 142 YPGVTAVRDMLNLIHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSAPCVNVVTHDNYTEAV 201 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242 H FL G + L E++ + M A+ ++E A RD L +L +QN + Sbjct: 202 HRVTLFLEGKSDLLAEELIQAMQVASEHLEFEQAARLRDLLTSLRSMQNRQYVDGRAADL 261 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D + AC+ F G+N GT FF KT+ E A+ILS F+ Q+Y + P P Sbjct: 262 DVLACAALSGHACVLLLSFRDGRNLGTRMFFPKTNGEERTAEILSAFVSQYYAEYPPPPE 321 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 ILL +E + +LLE +F + +K+ + +GE+ +E A+ NA + + +L+++ + Sbjct: 322 ILLDQEIPDHTLLEAAFSRSSAHKISLRWNVRGERAGYVELAVRNAQVALSTELTSQRAQ 381 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 ++ + + L KR+E +D SH MG + V VV G V++QYR++N+ + Sbjct: 382 RVRSEAVRQLLGLEGPVKRVECFDISHTMGEATVASCVVFDAVGPVRSQYRRYNI--TGI 439 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD A MR +ERRF + ++ ++ PDV+ +DGG GQL+ A+ Sbjct: 440 TPGDDYAAMRQAIERRFRRAVEEDKQ------------GERPDVLFIDGGAGQLAQAKMA 487 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 L + VE + ++ ++KG +R AG E + G+ L P L FIQ++RDEAHRFAI Sbjct: 488 LNAVGVE-SVLLVGVSKGEERRAGHETLIMLDGQELHPGAASPALQFIQQVRDEAHRFAI 546 Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR+K S L++I GIG R+ LL+ FG + + + +A +EGIS +A Sbjct: 547 TGHRARRQKTRMTSKLEDIPGIGSRRRANLLKHFGGLAGVKAAGQTEIARVEGISTALAA 606 Query: 602 KIYNHFH 608 KIY H Sbjct: 607 KIYASLH 613 >gi|325267203|ref|ZP_08133869.1| excinuclease ABC subunit C [Kingella denitrificans ATCC 33394] gi|324981336|gb|EGC16982.1| excinuclease ABC subunit C [Kingella denitrificans ATCC 33394] Length = 615 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 215/619 (34%), Positives = 326/619 (52%), Gaps = 27/619 (4%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + +P GVY+M+ VLYVGKA NL++RI SY +H+ RI MI QI + Sbjct: 12 IFLKSLPNAAGVYRMIAADDSVLYVGKAVNLKRRISSYFQKTDHSPRIKLMIKQIARVEI 71 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T+T E EAL+LE N+IK L P++NIL RDDKS+PY++I+ H+ P L R + Sbjct: 72 TLTRNEAEALILENNLIKSLSPKYNILFRDDKSYPYLMIS-GHEFPQLAYFRGTPKKPNQ 130 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGP+ + AV +I LQ+ F LR+C DSVF HR RPCLL QI RCS PC G +S E+Y Sbjct: 131 YFGPYPNGYAVRDSIEILQKVFRLRTCEDSVFAHRDRPCLLAQINRCSAPCMGAVSPEEY 190 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--- 237 E V A FL+G +L + + + M QA D+E+A RD++ AL +Q+ Sbjct: 191 GEQVRHAVAFLNGKTAHLMKDLEQKMLQAAETLDFEAAAKWRDQIQALGTMQSKQFIDSK 250 Query: 238 ---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLK--TDSESTNAQILSYFLRQ 292 +D ++ C+ G++ G +FF D E F+ Q Sbjct: 251 NLNQPQDIDIVAVAEAGGSVCLHWVSIRGGRHVGDKSFFPDTRYDPEPNAQDYAEAFVAQ 310 Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 Y KP P+ +L + L+ + ++ ++ ++GE++ + A+ NA + Sbjct: 311 HYLGKPKPDILLSNFTLP--EALQAALNSEHPRAMQFPKAEKGERKVWLNMAVKNAEHAL 368 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 Q ++ + LP +R+E +D SH G + + VV + +Q Sbjct: 369 AQHQLQNSRQTERVEQLAELIGLPANELRRLECFDISHTQGEATIASCVVYDDFAMQPSQ 428 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YR++N++ K DD A MR VL RR+ ++ + + PD V++DG Sbjct: 429 YRRYNINTA--KAGDDYAAMREVLTRRYGKMAR---------AAADGEPVRLPDAVLIDG 477 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFI 530 G GQ+ A V ++L I ++ IAKG +R AG+E+ + K E + P L+ + Sbjct: 478 GMGQIGVAVSVWEELGWT--IPLVGIAKGVERKAGLEELILPFKNERFRVPPNTPALHLL 535 Query: 531 QRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 Q +RDE+HRFAIT R +R KA S L++I G+G RK LL FG ++ + +S E L Sbjct: 536 QTIRDESHRFAITGMRAKRDKARITSSLNDIAGVGAKRKAALLMRFGGLRGVQAASVEDL 595 Query: 590 ASIEGISKKIACKIYNHFH 608 A +EGIS+ +A KIY++FH Sbjct: 596 AQVEGISRALAEKIYDYFH 614 >gi|26248178|ref|NP_754218.1| excinuclease ABC subunit C [Escherichia coli CFT073] gi|38704033|ref|NP_310678.2| excinuclease ABC subunit C [Escherichia coli O157:H7 str. Sakai] gi|89108748|ref|AP_002528.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli str. K-12 substr. W3110] gi|90111354|ref|NP_416423.4| excinuclease UvrABC, endonuclease subunit [Escherichia coli str. K-12 substr. MG1655] gi|157155145|ref|YP_001463216.1| excinuclease ABC subunit C [Escherichia coli E24377A] gi|157161384|ref|YP_001458702.1| excinuclease ABC subunit C [Escherichia coli HS] gi|161367590|ref|NP_288374.2| excinuclease ABC subunit C [Escherichia coli O157:H7 EDL933] gi|161986542|ref|YP_310160.2| excinuclease ABC subunit C [Shigella sonnei Ss046] gi|168790333|ref|ZP_02815340.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC869] gi|168802973|ref|ZP_02827980.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC508] gi|170081561|ref|YP_001730881.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli str. K-12 substr. DH10B] gi|188495148|ref|ZP_03002418.1| excinuclease ABC, C subunit [Escherichia coli 53638] gi|191173286|ref|ZP_03034816.1| excinuclease ABC, C subunit [Escherichia coli F11] gi|193071134|ref|ZP_03052058.1| excinuclease ABC, C subunit [Escherichia coli E110019] gi|194439599|ref|ZP_03071672.1| excinuclease ABC, C subunit [Escherichia coli 101-1] gi|208816990|ref|ZP_03258110.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC4045] gi|209400940|ref|YP_002271025.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC4115] gi|209919334|ref|YP_002293418.1| excinuclease ABC subunit C [Escherichia coli SE11] gi|215487118|ref|YP_002329549.1| excinuclease ABC subunit C [Escherichia coli O127:H6 str. E2348/69] gi|217328731|ref|ZP_03444812.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. TW14588] gi|218554496|ref|YP_002387409.1| excinuclease ABC subunit C [Escherichia coli IAI1] gi|218689906|ref|YP_002398118.1| excinuclease ABC subunit C [Escherichia coli ED1a] gi|218695519|ref|YP_002403186.1| excinuclease ABC subunit C [Escherichia coli 55989] gi|218699523|ref|YP_002407152.1| excinuclease ABC subunit C [Escherichia coli IAI39] gi|218705408|ref|YP_002412927.1| excinuclease ABC subunit C [Escherichia coli UMN026] gi|227885661|ref|ZP_04003466.1| excinuclease ABC subunit C [Escherichia coli 83972] gi|238901122|ref|YP_002926918.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli BW2952] gi|253773135|ref|YP_003035966.1| excinuclease ABC subunit C [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254793563|ref|YP_003078400.1| excinuclease ABC subunit C [Escherichia coli O157:H7 str. TW14359] gi|256017890|ref|ZP_05431755.1| excinuclease ABC subunit C [Shigella sp. D9] gi|256022429|ref|ZP_05436294.1| excinuclease ABC subunit C [Escherichia sp. 4_1_40B] gi|261227593|ref|ZP_05941874.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli O157:H7 str. FRIK2000] gi|261255823|ref|ZP_05948356.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli O157:H7 str. FRIK966] gi|291283090|ref|YP_003499908.1| UvrABC system protein C [Escherichia coli O55:H7 str. CB9615] gi|293405399|ref|ZP_06649391.1| UvrABC system protein C [Escherichia coli FVEC1412] gi|293410272|ref|ZP_06653848.1| excinuclease ABC [Escherichia coli B354] gi|293415222|ref|ZP_06657865.1| excinuclease ABC [Escherichia coli B185] gi|293446295|ref|ZP_06662717.1| excinuclease ABC [Escherichia coli B088] gi|298381043|ref|ZP_06990642.1| UvrABC system protein C [Escherichia coli FVEC1302] gi|300822316|ref|ZP_07102457.1| excinuclease ABC subunit C [Escherichia coli MS 119-7] gi|300899165|ref|ZP_07117444.1| excinuclease ABC subunit C [Escherichia coli MS 198-1] gi|300904798|ref|ZP_07122626.1| excinuclease ABC subunit C [Escherichia coli MS 84-1] gi|300917354|ref|ZP_07134023.1| excinuclease ABC subunit C [Escherichia coli MS 115-1] gi|300925004|ref|ZP_07140928.1| excinuclease ABC subunit C [Escherichia coli MS 182-1] gi|300951536|ref|ZP_07165370.1| excinuclease ABC subunit C [Escherichia coli MS 116-1] gi|300956573|ref|ZP_07168853.1| excinuclease ABC subunit C [Escherichia coli MS 175-1] gi|300982240|ref|ZP_07175952.1| excinuclease ABC subunit C [Escherichia coli MS 200-1] gi|300993977|ref|ZP_07180624.1| excinuclease ABC subunit C [Escherichia coli MS 45-1] gi|301018238|ref|ZP_07182753.1| excinuclease ABC subunit C [Escherichia coli MS 69-1] gi|301050734|ref|ZP_07197592.1| excinuclease ABC subunit C [Escherichia coli MS 185-1] gi|301305253|ref|ZP_07211350.1| excinuclease ABC subunit C [Escherichia coli MS 124-1] gi|301327702|ref|ZP_07220908.1| excinuclease ABC subunit C [Escherichia coli MS 78-1] gi|301645570|ref|ZP_07245499.1| excinuclease ABC subunit C [Escherichia coli MS 146-1] gi|306814263|ref|ZP_07448429.1| excinuclease ABC subunit C [Escherichia coli NC101] gi|307138579|ref|ZP_07497935.1| excinuclease ABC subunit C [Escherichia coli H736] gi|307314181|ref|ZP_07593791.1| excinuclease ABC, C subunit [Escherichia coli W] gi|309795978|ref|ZP_07690391.1| excinuclease ABC subunit C [Escherichia coli MS 145-7] gi|312967114|ref|ZP_07781332.1| excinuclease ABC, C subunit [Escherichia coli 2362-75] gi|312973877|ref|ZP_07788049.1| excinuclease ABC, C subunit [Escherichia coli 1827-70] gi|331642534|ref|ZP_08343669.1| excinuclease ABC subunit C [Escherichia coli H736] gi|331647505|ref|ZP_08348597.1| excinuclease ABC subunit C [Escherichia coli M605] gi|331653319|ref|ZP_08354324.1| excinuclease ABC subunit C [Escherichia coli M718] gi|331657958|ref|ZP_08358920.1| excinuclease ABC subunit C [Escherichia coli TA206] gi|331668606|ref|ZP_08369454.1| excinuclease ABC subunit C [Escherichia coli TA271] gi|331677797|ref|ZP_08378472.1| excinuclease ABC subunit C [Escherichia coli H591] gi|332278917|ref|ZP_08391330.1| excinuclease UvrABC [Shigella sp. D9] gi|67474772|sp|P0A8G0|UVRC_ECOLI RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|67474775|sp|P0A8G1|UVRC_ECOL6 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|67474776|sp|P0A8G2|UVRC_ECO57 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|119367838|sp|Q3Z2T7|UVRC_SHISS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|189038047|sp|A7ZN37|UVRC_ECO24 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|189038048|sp|A8A1B5|UVRC_ECOHS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|226695577|sp|B7NS11|UVRC_ECO7I RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|226695578|sp|B7M356|UVRC_ECO8A RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|226695579|sp|B7NBQ8|UVRC_ECOLU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|226698349|sp|B5YRT7|UVRC_ECO5E RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|226698350|sp|B6I0W0|UVRC_ECOSE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|229558027|sp|B1X671|UVRC_ECODH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|254764931|sp|B7UST2|UVRC_ECO27 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|254764932|sp|B7L8S5|UVRC_ECO55 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|254764933|sp|B7MWA0|UVRC_ECO81 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|259710338|sp|C4ZQJ1|UVRC_ECOBW RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|26108582|gb|AAN80785.1|AE016762_38 Excinuclease ABC subunit C [Escherichia coli CFT073] gi|1736572|dbj|BAA15733.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli str. K12 substr. W3110] gi|87081999|gb|AAC74980.2| excinuclease UvrABC, endonuclease subunit [Escherichia coli str. K-12 substr. MG1655] gi|157067064|gb|ABV06319.1| excinuclease ABC, C subunit [Escherichia coli HS] gi|157077175|gb|ABV16883.1| excinuclease ABC, C subunit [Escherichia coli E24377A] gi|169889396|gb|ACB03103.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli str. K-12 substr. DH10B] gi|188490347|gb|EDU65450.1| excinuclease ABC, C subunit [Escherichia coli 53638] gi|189370222|gb|EDU88638.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC869] gi|189375231|gb|EDU93647.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC508] gi|190906403|gb|EDV66012.1| excinuclease ABC, C subunit [Escherichia coli F11] gi|192955529|gb|EDV86008.1| excinuclease ABC, C subunit [Escherichia coli E110019] gi|194421508|gb|EDX37522.1| excinuclease ABC, C subunit [Escherichia coli 101-1] gi|208731333|gb|EDZ80022.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC4045] gi|209162340|gb|ACI39773.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC4115] gi|209912593|dbj|BAG77667.1| excinuclease ABC subunit C [Escherichia coli SE11] gi|215265190|emb|CAS09579.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli O127:H6 str. E2348/69] gi|217318078|gb|EEC26505.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. TW14588] gi|218352251|emb|CAU98007.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli 55989] gi|218361264|emb|CAQ98848.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli IAI1] gi|218369509|emb|CAR17276.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli IAI39] gi|218427470|emb|CAR08366.2| excinuclease UvrABC, endonuclease subunit [Escherichia coli ED1a] gi|218432505|emb|CAR13398.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli UMN026] gi|222033654|emb|CAP76395.1| UvrABC system protein C [Escherichia coli LF82] gi|227837234|gb|EEJ47700.1| excinuclease ABC subunit C [Escherichia coli 83972] gi|238861047|gb|ACR63045.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli BW2952] gi|253324179|gb|ACT28781.1| excinuclease ABC, C subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254592963|gb|ACT72324.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli O157:H7 str. TW14359] gi|284921826|emb|CBG34899.1| UvrABC system protein C [Escherichia coli 042] gi|290762963|gb|ADD56924.1| UvrABC system protein C [Escherichia coli O55:H7 str. CB9615] gi|291323125|gb|EFE62553.1| excinuclease ABC [Escherichia coli B088] gi|291427607|gb|EFF00634.1| UvrABC system protein C [Escherichia coli FVEC1412] gi|291432870|gb|EFF05849.1| excinuclease ABC [Escherichia coli B185] gi|291470740|gb|EFF13224.1| excinuclease ABC [Escherichia coli B354] gi|298278485|gb|EFI19999.1| UvrABC system protein C [Escherichia coli FVEC1302] gi|300297551|gb|EFJ53936.1| excinuclease ABC subunit C [Escherichia coli MS 185-1] gi|300307310|gb|EFJ61830.1| excinuclease ABC subunit C [Escherichia coli MS 200-1] gi|300316620|gb|EFJ66404.1| excinuclease ABC subunit C [Escherichia coli MS 175-1] gi|300357224|gb|EFJ73094.1| excinuclease ABC subunit C [Escherichia coli MS 198-1] gi|300399825|gb|EFJ83363.1| excinuclease ABC subunit C [Escherichia coli MS 69-1] gi|300403312|gb|EFJ86850.1| excinuclease ABC subunit C [Escherichia coli MS 84-1] gi|300406423|gb|EFJ89961.1| excinuclease ABC subunit C [Escherichia coli MS 45-1] gi|300415400|gb|EFJ98710.1| excinuclease ABC subunit C [Escherichia coli MS 115-1] gi|300418839|gb|EFK02150.1| excinuclease ABC subunit C [Escherichia coli MS 182-1] gi|300449211|gb|EFK12831.1| excinuclease ABC subunit C [Escherichia coli MS 116-1] gi|300525199|gb|EFK46268.1| excinuclease ABC subunit C [Escherichia coli MS 119-7] gi|300839459|gb|EFK67219.1| excinuclease ABC subunit C [Escherichia coli MS 124-1] gi|300845746|gb|EFK73506.1| excinuclease ABC subunit C [Escherichia coli MS 78-1] gi|301076102|gb|EFK90908.1| excinuclease ABC subunit C [Escherichia coli MS 146-1] gi|305852422|gb|EFM52873.1| excinuclease ABC subunit C [Escherichia coli NC101] gi|306906150|gb|EFN36668.1| excinuclease ABC, C subunit [Escherichia coli W] gi|307553926|gb|ADN46701.1| excinuclease ABC subunit C [Escherichia coli ABU 83972] gi|308120428|gb|EFO57690.1| excinuclease ABC subunit C [Escherichia coli MS 145-7] gi|309702208|emb|CBJ01524.1| UvrABC system protein C [Escherichia coli ETEC H10407] gi|310332472|gb|EFP99707.1| excinuclease ABC, C subunit [Escherichia coli 1827-70] gi|312288578|gb|EFR16480.1| excinuclease ABC, C subunit [Escherichia coli 2362-75] gi|312946505|gb|ADR27332.1| excinuclease ABC subunit C [Escherichia coli O83:H1 str. NRG 857C] gi|315061213|gb|ADT75540.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli W] gi|315257257|gb|EFU37225.1| excinuclease ABC subunit C [Escherichia coli MS 85-1] gi|315296528|gb|EFU55825.1| excinuclease ABC subunit C [Escherichia coli MS 16-3] gi|315617865|gb|EFU98463.1| excinuclease ABC, C subunit [Escherichia coli 3431] gi|320176084|gb|EFW51152.1| Excinuclease ABC subunit C [Shigella dysenteriae CDC 74-1112] gi|320191886|gb|EFW66533.1| Excinuclease ABC subunit C [Escherichia coli O157:H7 str. EC1212] gi|320194375|gb|EFW69006.1| Excinuclease ABC subunit C [Escherichia coli WV_060327] gi|320198606|gb|EFW73206.1| Excinuclease ABC subunit C [Escherichia coli EC4100B] gi|320641760|gb|EFX11148.1| excinuclease ABC subunit C [Escherichia coli O157:H7 str. G5101] gi|320647120|gb|EFX15953.1| excinuclease ABC subunit C [Escherichia coli O157:H- str. 493-89] gi|320652403|gb|EFX20701.1| excinuclease ABC subunit C [Escherichia coli O157:H- str. H 2687] gi|320658005|gb|EFX25767.1| excinuclease ABC subunit C [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658577|gb|EFX26271.1| excinuclease ABC subunit C [Escherichia coli O55:H7 str. USDA 5905] gi|320668475|gb|EFX35302.1| excinuclease ABC subunit C [Escherichia coli O157:H7 str. LSU-61] gi|323378210|gb|ADX50478.1| excinuclease ABC, C subunit [Escherichia coli KO11] gi|323937188|gb|EGB33468.1| excinuclease ABC [Escherichia coli E1520] gi|323940424|gb|EGB36615.1| excinuclease ABC [Escherichia coli E482] gi|323961962|gb|EGB57561.1| excinuclease ABC [Escherichia coli H489] gi|323972724|gb|EGB67925.1| excinuclease ABC [Escherichia coli TA007] gi|323977907|gb|EGB72993.1| excinuclease ABC [Escherichia coli TW10509] gi|324007283|gb|EGB76502.1| excinuclease ABC subunit C [Escherichia coli MS 57-2] gi|324013556|gb|EGB82775.1| excinuclease ABC subunit C [Escherichia coli MS 60-1] gi|324017948|gb|EGB87167.1| excinuclease ABC subunit C [Escherichia coli MS 117-3] gi|324118967|gb|EGC12856.1| excinuclease ABC [Escherichia coli E1167] gi|326342319|gb|EGD66100.1| Excinuclease ABC subunit C [Escherichia coli O157:H7 str. 1044] gi|326344826|gb|EGD68573.1| Excinuclease ABC subunit C [Escherichia coli O157:H7 str. 1125] gi|330911720|gb|EGH40230.1| excinuclease ABC subunit C [Escherichia coli AA86] gi|331039332|gb|EGI11552.1| excinuclease ABC subunit C [Escherichia coli H736] gi|331043229|gb|EGI15367.1| excinuclease ABC subunit C [Escherichia coli M605] gi|331049417|gb|EGI21489.1| excinuclease ABC subunit C [Escherichia coli M718] gi|331056206|gb|EGI28215.1| excinuclease ABC subunit C [Escherichia coli TA206] gi|331063800|gb|EGI35711.1| excinuclease ABC subunit C [Escherichia coli TA271] gi|331074257|gb|EGI45577.1| excinuclease ABC subunit C [Escherichia coli H591] gi|332101269|gb|EGJ04615.1| excinuclease UvrABC [Shigella sp. D9] gi|332343638|gb|AEE56972.1| excinuclease ABC, C subunit UvrC [Escherichia coli UMNK88] Length = 610 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 213/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + ++++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G K+ + +G++ + ++ A NA + T K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP + R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I + + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V +N ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|218548550|ref|YP_002382341.1| excinuclease ABC subunit C [Escherichia fergusonii ATCC 35469] gi|226732391|sp|B7LPF5|UVRC_ESCF3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|218356091|emb|CAQ88708.1| excinuclease UvrABC, endonuclease subunit [Escherichia fergusonii ATCC 35469] Length = 610 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 213/614 (34%), Positives = 338/614 (55%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M +A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G ++ + +G++ + ++ A NA + T K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLTELAGRRINVQTKPRGDRARYLKLARTNAATALTSK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP + R+E +D SH MG V VV NG ++++YR++ Sbjct: 370 LSQQSTVHQRLSALATVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRSEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I+ + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V +NR ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKAVFAELDVPWDKNRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPSDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|309790483|ref|ZP_07685043.1| excinuclease ABC, C subunit [Oscillochloris trichoides DG6] gi|308227470|gb|EFO81138.1| excinuclease ABC, C subunit [Oscillochloris trichoides DG6] Length = 625 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 209/617 (33%), Positives = 340/617 (55%), Gaps = 31/617 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVTC 64 +PE PGVY GR+LYVGK+ L+ R++SY + + ++ I + VT Sbjct: 21 VPEAPGVYLWRGEDGRLLYVGKSKRLRDRMRSYFGSPKGMSGKNRRLVRLIADFEIIVTQ 80 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E+EALLLE N+IK+ +P +NILL+DDKS+P+I +T + + P ++ R+ YFGP Sbjct: 81 SELEALLLEMNLIKQHRPPYNILLKDDKSYPFIKVTVQDEWPRIFSTRNVLDDGARYFGP 140 Query: 125 FASVDAVEKTINSLQRTFFL---RSCADSVF---RHRTRPCLLFQIKRCSGPCTGE-ISS 177 +AS +V KT++ L R F +C+DS F R + RPC +QI+RC GPC + ++ Sbjct: 141 YASAGSVYKTLDLLNRLFGFRPSYNCSDSWFNEHRRKGRPCTYYQIRRCLGPCVPDLVAP 200 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 + Y + + +FL G + + + R M QA ++E A RDR+ + I Sbjct: 201 DTYRQAIDSVCRFLDGKSDQVVRDLRRQMEQAAEDLNFERAAYLRDRIQDIEKIMERQQV 260 Query: 238 ---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D + A +Q F G+ F L+ + ++A +L+ FL QFY Sbjct: 261 LRTVDTDQDVIAFAREDGSAVVQVLFVRGGKLINAEPFTLQGTEDESDADLLASFLTQFY 320 Query: 295 TDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS-- 351 P P N+LL+E EE ++ ++ G++V+I VP++GEKR+++E A NA + Sbjct: 321 ERAPNIPPNLLLAEHVEEPMIIASWLAQKSGHRVEIGVPRRGEKRQLVELAEQNARQKLQ 380 Query: 352 --HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 TQ L++E L + + L +P+RIE YD S+ G V MVV Sbjct: 381 ELRTQWLNSEQRAVAALAELRELLDLAEMPQRIECYDISNTQGQQNVASMVVFERGEPKT 440 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 + YR+F + V+ +D A + V+ RRF + E ++ PD+V++ Sbjct: 441 SAYRRFKIKT--VEGANDVASIHEVISRRFKRATAEE----------SGTWADLPDLVLI 488 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGG+GQL+AA+ L +LN+E +I ++ +AKG R+ + ++ + +VL L Sbjct: 489 DGGRGQLNAAREALGQLNLE-QIPVVGVAKGVDRNR-FDLVCAEREDLIVLPRDSKALGL 546 Query: 530 IQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 +QR+ +EAHRFAIT HRK R KAA+ SPL+EI GIGP RK+ LL++FG++ I +++ + Sbjct: 547 VQRIDEEAHRFAITYHRKLRSKAAFASPLEEIPGIGPKRKKALLKAFGSLDGIRQATIDE 606 Query: 589 LASIEGISKKIACKIYN 605 +A++ G++K+ A ++ Sbjct: 607 IAAVPGMTKRAAEQLKA 623 >gi|170019749|ref|YP_001724703.1| excinuclease ABC subunit C [Escherichia coli ATCC 8739] gi|193066377|ref|ZP_03047425.1| excinuclease ABC, C subunit [Escherichia coli E22] gi|194429932|ref|ZP_03062442.1| excinuclease ABC, C subunit [Escherichia coli B171] gi|260844317|ref|YP_003222095.1| excinuclease UvrABC, endonuclease subunit UvrC [Escherichia coli O103:H2 str. 12009] gi|260855893|ref|YP_003229784.1| excinuclease UvrABC, endonuclease subunit UvrC [Escherichia coli O26:H11 str. 11368] gi|297518834|ref|ZP_06937220.1| excinuclease ABC subunit C [Escherichia coli OP50] gi|300928943|ref|ZP_07144447.1| excinuclease ABC subunit C [Escherichia coli MS 187-1] gi|189038050|sp|B1IZZ1|UVRC_ECOLC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|169754677|gb|ACA77376.1| excinuclease ABC, C subunit [Escherichia coli ATCC 8739] gi|192925962|gb|EDV80608.1| excinuclease ABC, C subunit [Escherichia coli E22] gi|194412021|gb|EDX28333.1| excinuclease ABC, C subunit [Escherichia coli B171] gi|195182997|dbj|BAG66563.1| endonuclease subunit of excinuclease UvrABC [Escherichia coli O111:H-] gi|257754542|dbj|BAI26044.1| excinuclease UvrABC, endonuclease subunit UvrC [Escherichia coli O26:H11 str. 11368] gi|257759464|dbj|BAI30961.1| excinuclease UvrABC, endonuclease subunit UvrC [Escherichia coli O103:H2 str. 12009] gi|300463097|gb|EFK26590.1| excinuclease ABC subunit C [Escherichia coli MS 187-1] gi|313848667|emb|CAQ32384.2| excinuclease ABC, subunit C; repair of UV damage to DNA, subunit of UvrABC Nucleotide Excision Repair Complex [Escherichia coli BL21(DE3)] gi|323152756|gb|EFZ39028.1| excinuclease ABC, C subunit [Escherichia coli EPECa14] gi|332089646|gb|EGI94748.1| excinuclease ABC, C subunit [Shigella boydii 5216-82] Length = 610 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 213/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + ++++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G K+ + +G++ + ++ A NA + T K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP + R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I + + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V +N ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGVDRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|323968329|gb|EGB63736.1| excinuclease ABC [Escherichia coli M863] gi|327253042|gb|EGE64696.1| excinuclease ABC, C subunit [Escherichia coli STEC_7v] Length = 610 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 213/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + ++++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G K+ + +G++ + ++ A NA + T K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP + R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I + + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V +N ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLEAIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|161485798|ref|NP_707800.3| excinuclease ABC subunit C [Shigella flexneri 2a str. 301] gi|161486474|ref|NP_837528.2| excinuclease ABC subunit C [Shigella flexneri 2a str. 2457T] gi|161984952|ref|YP_407566.2| excinuclease ABC subunit C [Shigella boydii Sb227] gi|281601355|gb|ADA74339.1| UvrABC system protein C [Shigella flexneri 2002017] gi|313650130|gb|EFS14543.1| excinuclease ABC, C subunit [Shigella flexneri 2a str. 2457T] gi|332756062|gb|EGJ86415.1| excinuclease ABC, C subunit [Shigella flexneri 4343-70] gi|332757243|gb|EGJ87580.1| excinuclease ABC, C subunit [Shigella flexneri 2747-71] gi|332757471|gb|EGJ87806.1| excinuclease ABC, C subunit [Shigella flexneri K-671] gi|332766644|gb|EGJ96848.1| excinuclease ABC, C subunit [Shigella flexneri 2930-71] gi|333003001|gb|EGK22555.1| excinuclease ABC, C subunit [Shigella flexneri VA-6] gi|333003323|gb|EGK22869.1| excinuclease ABC, C subunit [Shigella flexneri K-218] gi|333004170|gb|EGK23702.1| excinuclease ABC, C subunit [Shigella flexneri K-272] gi|333017660|gb|EGK36972.1| excinuclease ABC, C subunit [Shigella flexneri K-304] gi|333017783|gb|EGK37090.1| excinuclease ABC, C subunit [Shigella flexneri K-227] Length = 610 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 213/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAACIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + ++++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G K+ + +G++ + ++ A NA + T K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP + R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I + + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V +N ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|187730924|ref|YP_001879701.1| excinuclease ABC subunit C [Shigella boydii CDC 3083-94] gi|229557864|sp|B2TXF7|UVRC_SHIB3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|187427916|gb|ACD07190.1| excinuclease ABC, C subunit [Shigella boydii CDC 3083-94] Length = 610 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 213/614 (34%), Positives = 335/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 N +D + + +AC+ F G+ G+ ++F K + ++++ F+ QFY Sbjct: 250 NDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G K+ + +G++ + ++ A NA + K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALISK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP + R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I + + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V +N ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|28199210|ref|NP_779524.1| excinuclease ABC subunit C [Xylella fastidiosa Temecula1] gi|32130274|sp|Q87BX2|UVRC_XYLFT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|28057316|gb|AAO29173.1| excinuclease ABC subunit C [Xylella fastidiosa Temecula1] Length = 621 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 225/607 (37%), Positives = 339/607 (55%), Gaps = 19/607 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY+M +LYVGKA L+KR+ SY + R+T M++Q+ + T+T Sbjct: 17 HLSTAPGVYRMYAADDTLLYVGKAGALRKRVASYFNGTPKNTRLTAMLAQVVRMDVTITR 76 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 E EALLLE +IK L PR+N+LLRDDKS+PY+L+T + P + HR + G YFGP Sbjct: 77 NEAEALLLENQLIKSLTPRYNVLLRDDKSYPYVLLT-REAWPRIALHRGPQIVPGRYFGP 135 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + + AV +N + + F LRSC DSVFR+R+RPCL +QI RCS PC ++ + Y E V Sbjct: 136 YPGMTAVRDMLNLIHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSAPCVNVVTHDNYTEAV 195 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242 H FL G + L E++ + M A+ ++E A RD L +L +QN + Sbjct: 196 HRVTLFLEGKSDLLAEELIQAMQVASEHLEFEQAARLRDLLTSLRSMQNRQYVDGRAADL 255 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D + AC+ F G+N GT FF KT+ E A+ILS F+ Q+Y + P P Sbjct: 256 DVLACAALSGHACVLLLSFRDGRNLGTRMFFPKTNGEERTAEILSAFVSQYYAEYPPPPE 315 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 ILL +E + +LLE +F + +K+ + +GE+ +E A+ NA + + +L+++ + Sbjct: 316 ILLDQEIPDHTLLEAAFSRSSAHKISLRWNVRGERAGYVELAVRNAQVALSTELTSQRAQ 375 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 ++ + + L KR+E +D SH MG + V VV G V++QYR++N+ + Sbjct: 376 RVRSEAVRQLLGLEGPIKRVECFDISHTMGEATVASCVVFDAVGPVRSQYRRYNI--TGI 433 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD A MR +ERRF + ++ ++ PDV+ +DGG GQL+ A+ Sbjct: 434 TPGDDYAAMRQAIERRFRRAVEEDKQ------------GERPDVLFIDGGAGQLAQAKMA 481 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 L + VE + ++ ++KG +R AG E + G+ L P L FIQ++RDEAHRFAI Sbjct: 482 LNAVGVE-SVLLVGVSKGEERRAGHETLIMLDGQELHPGAASPALQFIQQVRDEAHRFAI 540 Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR+K S L++I GIG R+ LL+ FG + + + +A +EGIS +A Sbjct: 541 TGHRARRQKTRMTSKLEDIPGIGSRRRANLLKHFGGLAGVKAAGQTEIARVEGISTALAA 600 Query: 602 KIYNHFH 608 KIY H Sbjct: 601 KIYASLH 607 >gi|271967322|ref|YP_003341518.1| excinuclease ABC subunit C [Streptosporangium roseum DSM 43021] gi|270510497|gb|ACZ88775.1| excinuclease ABC, C subunit [Streptosporangium roseum DSM 43021] Length = 649 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 191/635 (30%), Positives = 306/635 (48%), Gaps = 37/635 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +PE PGVY+ GRV+YVGKA NL++R+ SY R M++ ++ +TV Sbjct: 25 SIPESPGVYRFRGAEGRVIYVGKAKNLRQRLNSYFADFAGLHPRTQTMLTTAVDVDWTVV 84 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE + IK PRFN+ RDDKS+PY+ +T + P + R + YFG Sbjct: 85 GTEVEALQLEYSWIKEYDPRFNVKYRDDKSYPYLAVTMGEEFPRVQVLRGAKRKGTRYFG 144 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F +RSC+ VFR RPCLL I +CS PC +++ ++ Sbjct: 145 PYSHAWAIRETVDLLLRVFPIRSCSAGVFRRAGQIGRPCLLGYIDKCSAPCVSRVTAVEH 204 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + F++G +++ R M QA ++YE A RD + AL + Sbjct: 205 RTLAEDFCDFMAGNTGRFMKRLEREMRQAAADQEYERAARLRDDIQALLRAMEKQAVVLG 264 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D +L + A +Q + G+ RG + + E+ +++ FL Q Y D Sbjct: 265 EGTDCDVIALAEDPLEAAVQVFYVRGGRIRGQRGWVVDKVEEAGPGELVEQFLLQMYGDA 324 Query: 298 PC---PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P +L+ + + + +V+I VP++G+K+ ++E NA S Q Sbjct: 325 TPEALPREVLVPVLPPDAEAVAELLSEHRKARVEIRVPQRGDKKSLMETVWRNAMESLKQ 384 Query: 355 KLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 S L++ L P R+E YD SHI G V MVV + K+ Sbjct: 385 HKLKRASDLTTRSKALQEVADALDLDQAPLRVECYDVSHIQGTDVVASMVVFEDGLARKS 444 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNE------------ENLNFHPKKQEY 458 +YR+F++ + D A + V+ RRF + ++ E + Sbjct: 445 EYRRFSVRSTE----GDVASIYEVISRRFKRYLEERSATGELDAEPGAEPGIDPETGRPR 500 Query: 459 SFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEAL 518 F P++V++DGG Q +AAQ L +L V++ + + +AK + E + + + Sbjct: 501 KFAYPPNLVVVDGGPAQAAAAQRALDELGVDD-VAVCGLAKRLE-----EVWLPGEDLPV 554 Query: 519 VLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGT 577 +L LY +QR+RDEAHRFAIT HR +R K+ S LDE+ G+GP R++ L++ FG+ Sbjct: 555 ILPRSSEALYLLQRVRDEAHRFAITYHRSKRSKSVKESALDEVPGLGPARRQALIKHFGS 614 Query: 578 VKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 VK + ++ + I GI A I + Sbjct: 615 VKRLREATAAQICEIPGIGPATAETIVSALKGENP 649 >gi|260448970|gb|ACX39392.1| excinuclease ABC, C subunit [Escherichia coli DH1] gi|315136550|dbj|BAJ43709.1| UvrABC system protein C [Escherichia coli DH1] Length = 610 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 213/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI I TV Sbjct: 11 LKTVTSQPGVYRMHDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + ++++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G K+ + +G++ + ++ A NA + T K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP + R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I + + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V +N ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|331663409|ref|ZP_08364319.1| excinuclease ABC subunit C [Escherichia coli TA143] gi|331059208|gb|EGI31185.1| excinuclease ABC subunit C [Escherichia coli TA143] Length = 610 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 213/614 (34%), Positives = 337/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTETLVAQIQQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + ++++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G K+ + +G++ + ++ A NA + T K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP + R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I + + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V +N ++ +AKG R AG+E F +GE +L P L+ IQ Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFILPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|117624056|ref|YP_852969.1| excinuclease ABC subunit C [Escherichia coli APEC O1] gi|189038049|sp|A1AC65|UVRC_ECOK1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|115513180|gb|ABJ01255.1| excinuclease ABC subunit C [Escherichia coli APEC O1] gi|323952408|gb|EGB48281.1| excinuclease ABC [Escherichia coli H252] Length = 610 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 214/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + ++++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGSTELSEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G K+ + +G++ + ++ A NA + T K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP + R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I + + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V +N ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I GIGP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGIGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|315290293|gb|EFU49671.1| excinuclease ABC subunit C [Escherichia coli MS 153-1] Length = 610 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 213/614 (34%), Positives = 335/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G ++F K + ++++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGNRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G K+ + +G++ + ++ A NA + T K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP + R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I + + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V +N ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|218558771|ref|YP_002391684.1| excinuclease ABC subunit C [Escherichia coli S88] gi|226695576|sp|B7MCH0|UVRC_ECO45 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|218365540|emb|CAR03267.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli S88] Length = 610 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 214/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + ++++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGSTELSEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G K+ + +G++ + ++ A NA + T K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP + R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I + + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMHQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V +N ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I GIGP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGIGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|325496967|gb|EGC94826.1| excinuclease ABC subunit C [Escherichia fergusonii ECD227] Length = 610 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 214/614 (34%), Positives = 338/614 (55%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M +A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G ++ I +G++ + ++ A NA + T K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLTELAGRRINIQTKPRGDRARYLKLARTNAATALTSK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP + R+E +D SH MG V VV NG ++++YR++ Sbjct: 370 LSQQSTVHQRLSALATVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRSEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I+ + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V +NR ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKAVFAELDVPWDKNRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPSDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|170680797|ref|YP_001743331.1| excinuclease ABC subunit C [Escherichia coli SMS-3-5] gi|226732184|sp|B1LQU4|UVRC_ECOSM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|170518515|gb|ACB16693.1| excinuclease ABC, C subunit [Escherichia coli SMS-3-5] Length = 610 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 213/614 (34%), Positives = 337/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + ++++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G K+ + +G++ + ++ A NA + T K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP + R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ ++ DD A M VL RR+ + I + + PDV+++DGGKGQ Sbjct: 429 NI--TGIRPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V +N ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|301029363|ref|ZP_07192460.1| excinuclease ABC subunit C [Escherichia coli MS 196-1] gi|299877789|gb|EFI86000.1| excinuclease ABC subunit C [Escherichia coli MS 196-1] Length = 610 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 212/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + ++++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G K+ + +G++ + ++ A NA + T K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP + R+E +D SH MG V VV +G ++ +YR++ Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDASGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I + + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V +N ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|294085776|ref|YP_003552536.1| Nuclease subunit of the excinuclease complex [Candidatus Puniceispirillum marinum IMCC1322] gi|292665351|gb|ADE40452.1| Nuclease subunit of the excinuclease complex [Candidatus Puniceispirillum marinum IMCC1322] Length = 638 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 252/613 (41%), Positives = 373/613 (60%), Gaps = 17/613 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P PGVY+M + G VLYVGKA +L +R+ +Y N ++RI M+S+ + Sbjct: 31 ELKVLPHQPGVYRMTNGLGEVLYVGKARDLVRRVSNYTQPNRLSNRIMRMVSETEKLEVI 90 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT +E+EALLLE+N+IK++KPR+NILLRDDKS P IL+T H L KHR +G Y Sbjct: 91 VTKSEIEALLLESNLIKKMKPRYNILLRDDKSLPQILLTADHDFGQLAKHRGRKNRKGDY 150 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPFAS +V +T+ L R F LR+C+DSVF RTRPCL +QIKRC+ PC G ++ Y Sbjct: 151 FGPFASAGSVNRTVADLARAFMLRTCSDSVFATRTRPCLQYQIKRCTAPCVGYVNKADYA 210 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + +++A++FLSG + ++ AR M+ A K ++E+A I R+R+ AL+ IQ D Sbjct: 211 KQMNQARRFLSGDSAQIQRDYARRMHDAAEKLEFETAAIWRNRIRALTGIQASQDINIPN 270 Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D ++ + +CIQ F G N G ++FL + A+ L+ F+ QFY DK Sbjct: 271 LKDADIIAIAQSGARSCIQIFFIRGGSNYGNRSYFLTHPGTTPPAETLTAFMGQFYDDKE 330 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P ILL E ++ L+ + Q G VK++ P++G + KI+ A+ NA + + L+ Sbjct: 331 APAEILLCEMPDDADLIADALSSQAGRTVKLSSPQRGARHKIMTMAIKNAEEALARHLAN 390 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 S + +L + + L P+RIEIYDNSHI G AVG MVV G GF+K+ YR+FN+ Sbjct: 391 SASQRRLLGELAEALGLAAAPERIEIYDNSHIQGKHAVGGMVVAGAEGFMKSAYRRFNIK 450 Query: 419 PNDVKTQ---DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 + DD MMR V+ RRF + +K + + +WPD++++DGGKGQ Sbjct: 451 DDGKFGTVQGDDFEMMRQVINRRFERALKEDPDRLSD---------NWPDLLLIDGGKGQ 501 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 LSA V+++L V + I +++I+KGP R+AG E+F + ++ L ++F+QRLRD Sbjct: 502 LSAVTEVMEELGVSD-IDVVAISKGPDRNAGREQFHMNGRQSFTLPPNASAMHFLQRLRD 560 Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHR+AI THR +R K SPLD + GIGP RK+ LL FG+ + +S + + L ++EG Sbjct: 561 EAHRYAIGTHRSKRLKTELTSPLDAVPGIGPKRKKALLAHFGSARAVSAAGLKDLEAVEG 620 Query: 595 ISKKIACKIYNHF 607 ISK A +I++ F Sbjct: 621 ISKTFAQQIFDWF 633 >gi|167624269|ref|YP_001674563.1| excinuclease ABC subunit C [Shewanella halifaxensis HAW-EB4] gi|189038091|sp|B0TIW9|UVRC_SHEHH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|167354291|gb|ABZ76904.1| excinuclease ABC, C subunit [Shewanella halifaxensis HAW-EB4] Length = 609 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 210/616 (34%), Positives = 324/616 (52%), Gaps = 28/616 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D V+YVGKA +L+KR+ SY N + ++S I NI TV Sbjct: 11 LKTVTSSPGVYRMYDAKAVVIYVGKAKDLKKRLSSYFRKNLTNVKTQALVSHIANIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E +AL+LE + IK+ P++N+LLRDDKS+PYIL+++ HK P L HR +G YF Sbjct: 71 THSETDALILENDYIKQYMPKYNVLLRDDKSYPYILLSN-HKHPRLAYHRGPKRDKGLYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + AV ++++ LQ+ F +R C D ++ R+RPCL +QI RCS PC G++S E Y E Sbjct: 130 GPYPNGGAVRESLHLLQKIFPIRQCDDLYYKSRSRPCLQYQIGRCSAPCVGKVSLEDYQE 189 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YN 240 V A FL G +H + + M QA YE A ++RD++ AL + + Sbjct: 190 QVRLATLFLKGKDHQVMSVLVGKMEQAASDMRYEQAALYRDQITALRRVSEQQEVSNASG 249 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC- 299 MD Y+ +AC F G+ G+ +++ K + +++L F+ QFY + Sbjct: 250 DMDVIGAYYASGVACFHLLFIREGKIFGSRSYYPKVPVNTEVSEVLRSFMLQFYLNSDSQ 309 Query: 300 ---PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P+ IL+SE EE L + KV+I +GE+ + AL NA + +L Sbjct: 310 RLTPKEILISEPFEEQDELAKAIQAAQNKKVEIKTQVRGERASFLRLALTNATNAVNTRL 369 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 S + + + + + +R+E +D SH MG S V VV G K YR++N Sbjct: 370 SHKNTIEQRFLLLEEAIESTNKIQRMECFDISHTMGESTVASCVVFNREGPSKADYRRYN 429 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + DD A M+ + RRF ++ S PD++ +DGG GQL Sbjct: 430 I--TGITPGDDYAAMKQAITRRFDKI---------------SSSGKIPDILFIDGGIGQL 472 Query: 477 SAAQGVLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRL 533 AQ V+ + + ++N T+I +AKG R G+E + E L L+ IQ + Sbjct: 473 RIAQKVVDEKFVALDNAPTLIGVAKGEGRKPGLETLIYGENEESFTLPADSGALHLIQHI 532 Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDE+HRFAIT HR +R+K S L+ I G+GP R++ LLQ G ++ + +S L + Sbjct: 533 RDESHRFAITGHRNKRQKTRNTSTLESIAGVGPKRRKALLQYLGGLQEVKGASVSELVKV 592 Query: 593 EGISKKIACKIYNHFH 608 GIS ++A I++ Sbjct: 593 PGISLEMAQTIHDALR 608 >gi|260868505|ref|YP_003234907.1| excinuclease UvrABC, endonuclease subunit UvrC [Escherichia coli O111:H- str. 11128] gi|257764861|dbj|BAI36356.1| excinuclease UvrABC, endonuclease subunit UvrC [Escherichia coli O111:H- str. 11128] gi|323180837|gb|EFZ66377.1| excinuclease ABC, C subunit [Escherichia coli 1180] Length = 610 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 212/614 (34%), Positives = 335/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + ++++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G K+ + +G++ + ++ A NA + T K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP + R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I + + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V +N ++ +AKG R G+E F +GE L P L+ IQ Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGVDRKVGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|149185958|ref|ZP_01864273.1| excinuclease ABC subunit C [Erythrobacter sp. SD-21] gi|148830519|gb|EDL48955.1| excinuclease ABC subunit C [Erythrobacter sp. SD-21] Length = 655 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 256/610 (41%), Positives = 361/610 (59%), Gaps = 8/610 (1%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + + PGVY+MLD G VLYVGKA +L+ R+ +Y ++R+ M+SQ + VT Sbjct: 46 KTLKPRPGVYRMLDTRGDVLYVGKARSLKARVANYTQVKGLSNRLQRMVSQCRAMEIVVT 105 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E EALLLEA +IKR +P FN+LLRDDKSFP+IL+ H P + KHR + +G+Y+G Sbjct: 106 NSEAEALLLEAQLIKRYRPPFNVLLRDDKSFPFILLRADHAFPRIQKHRGARRAKGNYYG 165 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS +V KT+N+LQ+ F LRSC DS F +R RPCLL+QIKRCS PC G I Y Sbjct: 166 PFASAGSVNKTLNALQKLFLLRSCTDSFFNNRDRPCLLYQIKRCSAPCVGRIDEAGYDAL 225 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V+EAK FLSG + ++ I + M +A D+E+A I RDRL A + IQ Sbjct: 226 VNEAKDFLSGKSSAVQANIEKQMAKAAEDLDFETAAILRDRLRAATFIQGSQAINASGVG 285 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+L +Q F GQN G FF K + + ++LS L QFY + P P Sbjct: 286 DADVFALAAKGGQIGVQAFFIRGGQNWGHKAFFPKNTGDLEHDEVLSDVLLQFYEEVPPP 345 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 IL+ + E L+ + ++ G+ V I++P++G++RK++ QA NA S ++L+ Sbjct: 346 RTILVDRDLAEQELIAEALAEKAGHAVAISIPQRGDRRKLMSQAQRNAVESLERRLAESG 405 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 + L++ + L P+RIEIYDNSHI G A+G MVV GF K QYRKFN++ Sbjct: 406 TKAQRLRELAEFLELEEPPQRIEIYDNSHIQGDKALGAMVVASPEGFEKGQYRKFNINTA 465 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 DD MMR V+ RRF +L + E + + P + + WPD++++DGGKGQ+S+ Sbjct: 466 QT--NDDFGMMREVMSRRFRKLAETERDSDGAPGGKGHE-AIWPDLLLIDGGKGQVSSVM 522 Query: 481 GVLKKLNVENRITIISIAKGPKR-SAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 GVL+ L + ++ +I IAKGP G E F G L + +L+++Q LRDE HR Sbjct: 523 GVLEDLGIAEQVPVIGIAKGPHHGREGREVFHFPDGREKTLPVNSQLLFYLQTLRDEVHR 582 Query: 540 FAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 +AI HR +R +A SPLDEI GIGP RKR LL FGT + ++ + L GIS Sbjct: 583 YAIGAHRAKRSRAITASPLDEIPGIGPARKRALLLHFGTAGKVRAAALDDLKRAPGISAG 642 Query: 599 IACKIYNHFH 608 +A +IY+ +H Sbjct: 643 VAQQIYDFYH 652 >gi|329849460|ref|ZP_08264306.1| excinuclease ABC, C subunit [Asticcacaulis biprosthecum C19] gi|328841371|gb|EGF90941.1| excinuclease ABC, C subunit [Asticcacaulis biprosthecum C19] Length = 634 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 269/607 (44%), Positives = 371/607 (61%), Gaps = 10/607 (1%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 P+ PGVY+ML G VLYVGKA +L+KR+ Y HT RI M++ + T TE Sbjct: 34 PDKPGVYRMLGDDGEVLYVGKAKSLKKRVLQYAQGRFHTQRIARMVALTREMVLIRTDTE 93 Query: 67 VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126 EALLLEA +IK LKPR+N+LLRDDK F IL+ H+ P + KHR + +I G YFGPFA Sbjct: 94 GEALLLEARLIKALKPRYNVLLRDDKMFAEILVRKDHEAPQVTKHRGAHSIPGDYFGPFA 153 Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186 S AV T+++LQ+ F LR+C DSV+ RTRPC+L QIKRCS PCTG IS Y + Sbjct: 154 STFAVNNTLDTLQKAFLLRTCTDSVYASRTRPCMLHQIKRCSAPCTGVISLPDYNALASQ 213 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--DC 244 A FL G + + E+++ M QA+ + D+E A RDR+ AL+H+ N D Sbjct: 214 AHDFLRGKSRKVIERMSAEMMQASDEMDFERAAHLRDRVRALNHVAMSTSVDLNEEEADV 273 Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304 FS++ AC+Q F+ GQN G +F + DSE T IL FL QFY D+ P IL Sbjct: 274 FSVFAQGGGACVQVVFYRAGQNWGDRAYFPRVDSEDTEGAILDAFLGQFYQDRQVPRLIL 333 Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364 +S + E L+ + + G KV+IT P +G K +I++ AL NA + ++L+ + Sbjct: 334 VSHDLNEPDLMMEALSLKAGRKVQITRPMRGGKCEIVQHALNNAKAALGRRLAEHSAQSK 393 Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424 +L+ + F L P RIE+YDNSH+ G AVG MVV G GF+K QYRKF + D K Sbjct: 394 LLQGVAEAFGLDAPPIRIEVYDNSHLGGTHAVGGMVVAGPEGFMKGQYRKFTIRDLDTKP 453 Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484 DD AMM V RRF +LIK ++ + PD+V++DGG+GQL A GV+ Sbjct: 454 GDDYAMMAEVFRRRFMRLIKEKDVPEGEKAFGK------PDLVLVDGGQGQLDAVLGVMA 507 Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544 +L +E+ I I+ +AKGP R AG+E+FF+ ++ + P+LY++QRLRDEAHR+AI Sbjct: 508 ELAMED-IRIVGVAKGPDRDAGLERFFMPGRLPFMMEPKSPVLYYLQRLRDEAHRYAIGA 566 Query: 545 HRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 +R +R KA +PLD+I+GIG RKR LL +FG+ + ++ + E L +EGIS +A KI Sbjct: 567 NRHKRDKAISQNPLDDIDGIGARRKRALLAAFGSGREVASARVEELQKVEGISAALAQKI 626 Query: 604 YNHFHKN 610 Y+ FH Sbjct: 627 YDFFHGE 633 >gi|215426757|ref|ZP_03424676.1| excinuclease ABC subunit C [Mycobacterium tuberculosis T92] gi|289749978|ref|ZP_06509356.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis T92] gi|289690565|gb|EFD57994.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis T92] Length = 646 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 184/638 (28%), Positives = 306/638 (47%), Gaps = 34/638 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA +L+ R+ SY + R +++ + +TV Sbjct: 13 SIPVEPGVYRFRDQHGRVIYVGKAKSLRSRLTSYFADVASLAPRTRQLVTTAAKVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE IK PRFN+ RDDKS+P + +T + P L +R YFG Sbjct: 73 GTEVEALQLEYTWIKEFDPRFNVRYRDDKSYPVLAVTLGEEFPRLMVYRGPRRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F R+C+ VF+ RPCLL I +CS PC + + ++ Sbjct: 133 PYSHAWAIRETLDLLTRVFPARTCSAGVFKRHRQIDRPCLLGYIDKCSAPCISRVDAAQH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + V + FLSG + + MN A + D+E A RD L+AL + Sbjct: 193 RQIVADFCDFLSGKTDRFARALEQQMNAAAEQLDFERAARLRDDLSALKRAMEKQAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE--STNAQILSYFLRQFY- 294 D + ++ A +Q G+ RG + ++ E + Q++ FL QFY Sbjct: 253 DGTDADVVAFADDELEAAVQVFHVRGGRVRGQRGWIVEKPGEPGDSGIQLVEQFLTQFYG 312 Query: 295 -----------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQ 343 + P P +L+ L G +V + VP++G+KR + E Sbjct: 313 DQAALDDAADESANPVPREVLVPCLPSNAEELASWLSGLRGSRVVLRVPRRGDKRALAET 372 Query: 344 ALINAHRSHTQKLSTEISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCM 399 NA + Q S L+ L P RIE D SH+ G VG + Sbjct: 373 VHRNAEDALQQHKLKRASDFNARSAALQSIQDSLGLADAPLRIECVDVSHVQGTDVVGSL 432 Query: 400 VVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLN-FHPKKQE 457 VV + K+ YR F + + + DD A + V RRF + ++++ + + P+++ Sbjct: 433 VVFEDGLPRKSDYRHFGIREAAGQGRSDDVACIAEVTRRRFLRHLRDQSDPDLLSPERKS 492 Query: 458 YSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA 517 F P++ ++DGG Q++AA V+ +L V + + +I +AK + E + + + Sbjct: 493 RRFAYPPNLYVVDGGAPQVNAASAVIDELGVTD-VAVIGLAKRLE-----EVWVPSEPDP 546 Query: 518 LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFG 576 +++ LY +QR+RDEAHRFAIT HR +R + S LD + G+G R++ L+ FG Sbjct: 547 IIMPRNSEGLYLLQRVRDEAHRFAITYHRSKRSTRMTASALDSVPGLGEHRRKALVTHFG 606 Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 ++ + ++ + + ++ GI A +++ ++S Sbjct: 607 SIARLKEATVDEITAVPGIGVATATAVHDALRPDSSGA 644 >gi|194434969|ref|ZP_03067212.1| excinuclease ABC, C subunit [Shigella dysenteriae 1012] gi|194416804|gb|EDX32930.1| excinuclease ABC, C subunit [Shigella dysenteriae 1012] gi|320178185|gb|EFW53162.1| Excinuclease ABC subunit C [Shigella boydii ATCC 9905] gi|332095447|gb|EGJ00468.1| excinuclease ABC, C subunit [Shigella dysenteriae 155-74] Length = 610 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 213/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + ++++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G K+ + +G++ + ++ A NA + T K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP + R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I + + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V +N ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPTDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|324113631|gb|EGC07606.1| excinuclease ABC [Escherichia fergusonii B253] Length = 610 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 213/614 (34%), Positives = 338/614 (55%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M +A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHALFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G ++ + +G++ + ++ A NA + T K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLTELAGRRINVQTKPRGDRARYLKLARTNAATALTSK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP + R+E +D SH MG V VV NG ++++YR++ Sbjct: 370 LSQQSTVHQRLSALATVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRSEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I+ + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V +NR ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKAVFAELDVPWDKNRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPSDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|161502932|ref|YP_001570044.1| excinuclease ABC subunit C [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864279|gb|ABX20902.1| hypothetical protein SARI_00991 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 607 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 213/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI I TV Sbjct: 8 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 67 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 68 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 126 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 127 GPFPNGYAVRETLALLQKIFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 186 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M +A+ + +E A RD++ A+ + Sbjct: 187 QQVEYVRLFLSGKDDQVLTQLIARMEKASQELAFEEAARIRDQIQAVRRVTERQFVSNTG 246 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 247 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 306 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + LL S + G ++ + +G++ + ++ A NA + T K Sbjct: 307 MRTLPGEILLDFNLSDKMLLADSLSELAGRRIYVQTKPRGDRARYLKLARTNAATALTTK 366 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP + R+E +D SH MG V VV NG ++ +YR++ Sbjct: 367 LSQQSTVTQRLTALATVLKLPTVK-RMECFDISHTMGEQTVASCVVFDANGPIRAEYRRY 425 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I+ + PDV+++DGGKGQ Sbjct: 426 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 468 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V ++R ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 469 LAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFCLPPDSPALHVIQ 528 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDEAH AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 529 HIRDEAHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 588 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 589 KVPGISQGLAEKIF 602 >gi|15608558|ref|NP_215936.1| excinuclease ABC subunit C [Mycobacterium tuberculosis H37Rv] gi|15840877|ref|NP_335914.1| excinuclease ABC subunit C [Mycobacterium tuberculosis CDC1551] gi|31792614|ref|NP_855107.1| excinuclease ABC subunit C [Mycobacterium bovis AF2122/97] gi|121637350|ref|YP_977573.1| excinuclease ABC subunit C [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148661211|ref|YP_001282734.1| excinuclease ABC subunit C [Mycobacterium tuberculosis H37Ra] gi|148822640|ref|YP_001287394.1| excinuclease ABC subunit C [Mycobacterium tuberculosis F11] gi|215430307|ref|ZP_03428226.1| excinuclease ABC subunit C [Mycobacterium tuberculosis EAS054] gi|218753128|ref|ZP_03531924.1| excinuclease ABC subunit C [Mycobacterium tuberculosis GM 1503] gi|224989825|ref|YP_002644512.1| excinuclease ABC subunit C [Mycobacterium bovis BCG str. Tokyo 172] gi|253799530|ref|YP_003032531.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis KZN 1435] gi|254231660|ref|ZP_04924987.1| excinuclease ABC (subunit C-nuclease) uvrC [Mycobacterium tuberculosis C] gi|254364302|ref|ZP_04980348.1| excinuclease ABC (subunit C-nuclease) uvrC [Mycobacterium tuberculosis str. Haarlem] gi|254550434|ref|ZP_05140881.1| excinuclease ABC subunit C [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260200474|ref|ZP_05767965.1| excinuclease ABC subunit C [Mycobacterium tuberculosis T46] gi|260204685|ref|ZP_05772176.1| excinuclease ABC subunit C [Mycobacterium tuberculosis K85] gi|289442865|ref|ZP_06432609.1| excinuclease ABC, C subunit [Mycobacterium tuberculosis T46] gi|289554790|ref|ZP_06444000.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis KZN 605] gi|289574089|ref|ZP_06454316.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis K85] gi|289753502|ref|ZP_06512880.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis EAS054] gi|289761579|ref|ZP_06520957.1| excinuclease ABC (subunit C-nuclease) uvrC [Mycobacterium tuberculosis GM 1503] gi|297633976|ref|ZP_06951756.1| excinuclease ABC subunit C [Mycobacterium tuberculosis KZN 4207] gi|297730965|ref|ZP_06960083.1| excinuclease ABC subunit C [Mycobacterium tuberculosis KZN R506] gi|306775603|ref|ZP_07413940.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis SUMu001] gi|306780751|ref|ZP_07419088.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis SUMu002] gi|306784150|ref|ZP_07422472.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis SUMu003] gi|306788520|ref|ZP_07426842.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis SUMu004] gi|306792843|ref|ZP_07431145.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis SUMu005] gi|306797241|ref|ZP_07435543.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis SUMu006] gi|306803124|ref|ZP_07439792.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis SUMu008] gi|306807320|ref|ZP_07443988.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis SUMu007] gi|306967518|ref|ZP_07480179.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis SUMu009] gi|306971711|ref|ZP_07484372.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis SUMu010] gi|307079421|ref|ZP_07488591.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis SUMu011] gi|307083990|ref|ZP_07493103.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis SUMu012] gi|313658298|ref|ZP_07815178.1| excinuclease ABC subunit C [Mycobacterium tuberculosis KZN V2475] gi|54039844|sp|P67427|UVRC_MYCBO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|54042752|sp|P67426|UVRC_MYCTU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|189038066|sp|A1KIK9|UVRC_MYCBP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|189038071|sp|A5U2C2|UVRC_MYCTA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|254764938|sp|C1AN65|UVRC_MYCBT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|1542929|emb|CAB02168.1| PROBABLE EXCINUCLEASE ABC (SUBUNIT C-NUCLEASE) UVRC [Mycobacterium tuberculosis H37Rv] gi|13881078|gb|AAK45728.1| excinuclease ABC, subunit C [Mycobacterium tuberculosis CDC1551] gi|31618203|emb|CAD94316.1| PROBABLE EXCINUCLEASE ABC SUBUNIT C UVRC [Mycobacterium bovis AF2122/97] gi|121492997|emb|CAL71468.1| Probable excinuclease ABC subunit c uvrC [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600719|gb|EAY59729.1| excinuclease ABC (subunit C-nuclease) uvrC [Mycobacterium tuberculosis C] gi|134149816|gb|EBA41861.1| excinuclease ABC (subunit C-nuclease) uvrC [Mycobacterium tuberculosis str. Haarlem] gi|148505363|gb|ABQ73172.1| excinuclease ABC subunit C [Mycobacterium tuberculosis H37Ra] gi|148721167|gb|ABR05792.1| excinuclease ABC subunit C (nuclease) uvrC [Mycobacterium tuberculosis F11] gi|224772938|dbj|BAH25744.1| excinuclease ABC subunit C [Mycobacterium bovis BCG str. Tokyo 172] gi|253321033|gb|ACT25636.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis KZN 1435] gi|289415784|gb|EFD13024.1| excinuclease ABC, C subunit [Mycobacterium tuberculosis T46] gi|289439422|gb|EFD21915.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis KZN 605] gi|289538520|gb|EFD43098.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis K85] gi|289694089|gb|EFD61518.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis EAS054] gi|289709085|gb|EFD73101.1| excinuclease ABC (subunit C-nuclease) uvrC [Mycobacterium tuberculosis GM 1503] gi|308215913|gb|EFO75312.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis SUMu001] gi|308326410|gb|EFP15261.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis SUMu002] gi|308331096|gb|EFP19947.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis SUMu003] gi|308334907|gb|EFP23758.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis SUMu004] gi|308338716|gb|EFP27567.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis SUMu005] gi|308342402|gb|EFP31253.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis SUMu006] gi|308346243|gb|EFP35094.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis SUMu007] gi|308350195|gb|EFP39046.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis SUMu008] gi|308354836|gb|EFP43687.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis SUMu009] gi|308358785|gb|EFP47636.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis SUMu010] gi|308362722|gb|EFP51573.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis SUMu011] gi|308366355|gb|EFP55206.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis SUMu012] gi|323720084|gb|EGB29190.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis CDC1551A] gi|328459278|gb|AEB04701.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis KZN 4207] Length = 646 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 185/638 (28%), Positives = 307/638 (48%), Gaps = 34/638 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA +L+ R+ SY + R +++ + +TV Sbjct: 13 SIPVEPGVYRFRDQHGRVIYVGKAKSLRSRLTSYFADVASLAPRTRQLVTTAAKVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE IK PRFN+ RDDKS+P + +T + P L +R YFG Sbjct: 73 GTEVEALQLEYTWIKEFDPRFNVRYRDDKSYPVLAVTLGEEFPRLMVYRGPRRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F R+C+ VF+ RPCLL I +CS PC G + + ++ Sbjct: 133 PYSHAWAIRETLDLLTRVFPARTCSAGVFKRHRQIDRPCLLGYIDKCSAPCIGRVDAAQH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + V + FLSG + + MN A + D+E A RD L+AL + Sbjct: 193 RQIVADFCDFLSGKTDRFARALEQQMNAAAEQLDFERAARLRDDLSALKRAMEKQAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE--STNAQILSYFLRQFY- 294 D + ++ A +Q G+ RG + ++ E + Q++ FL QFY Sbjct: 253 DGTDADVVAFADDELEAAVQVFHVRGGRVRGQRGWIVEKPGEPGDSGIQLVEQFLTQFYG 312 Query: 295 -----------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQ 343 + P P +L+ L G +V + VP++G+KR + E Sbjct: 313 DQAALDDAADESANPVPREVLVPCLPSNAEELASWLSGLRGSRVVLRVPRRGDKRALAET 372 Query: 344 ALINAHRSHTQKLSTEISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCM 399 NA + Q S L+ L P RIE D SH+ G VG + Sbjct: 373 VHRNAEDALQQHKLKRASDFNARSAALQSIQDSLGLADAPLRIECVDVSHVQGTDVVGSL 432 Query: 400 VVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLN-FHPKKQE 457 VV + K+ YR F + + + DD A + V RRF + ++++ + + P+++ Sbjct: 433 VVFEDGLPRKSDYRHFGIREAAGQGRSDDVACIAEVTRRRFLRHLRDQSDPDLLSPERKS 492 Query: 458 YSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA 517 F P++ ++DGG Q++AA V+ +L V + + +I +AK + E + + + Sbjct: 493 RRFAYPPNLYVVDGGAPQVNAASAVIDELGVTD-VAVIGLAKRLE-----EVWVPSEPDP 546 Query: 518 LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFG 576 +++ LY +QR+RDEAHRFAIT HR +R + S LD + G+G R++ L+ FG Sbjct: 547 IIMPRNSEGLYLLQRVRDEAHRFAITYHRSKRSTRMTASALDSVPGLGEHRRKALVTHFG 606 Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 ++ + ++ + + ++ GI A +++ ++S Sbjct: 607 SIARLKEATVDEITAVPGIGVATATAVHDALRPDSSGA 644 >gi|320184741|gb|EFW59533.1| Excinuclease ABC subunit C [Shigella flexneri CDC 796-83] Length = 610 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 212/614 (34%), Positives = 335/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + ++++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G K+ + +G++ + ++ A NA + T K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP + R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I + + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V +N ++ +AKG R AG+E F + E L P L+ IQ Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEDEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|145298551|ref|YP_001141392.1| excinuclease ABC, subunit C [Aeromonas salmonicida subsp. salmonicida A449] gi|142851323|gb|ABO89644.1| excinuclease ABC, subunit C [Aeromonas salmonicida subsp. salmonicida A449] Length = 616 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 212/614 (34%), Positives = 338/614 (55%), Gaps = 31/614 (5%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 GVY+M D G V+YVGKA +L+KR+ SY +N + + ++ QI +I+ VT TE Sbjct: 19 HQSGVYRMYDSGGTVIYVGKAKDLKKRLASYFRTNVDSIKTRTLVRQIADIQVMVTHTET 78 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EAL+LE N+IK+ +PR+N+LLRDDKS+P+I+IT H+ P + HR + I+G YFGP+ S Sbjct: 79 EALILEHNLIKQYQPRYNVLLRDDKSYPWIIIT-AHQHPRIGVHRGARKIKGEYFGPYPS 137 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHE 186 AV ++++ +Q+ F +R C D+V+ +RTRPCLL+Q+KRC+GPC +S +Y + V Sbjct: 138 GGAVRESLHLMQKIFPVRQCEDAVYANRTRPCLLYQLKRCAGPCVAGLVSEAEYAQQVGL 197 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNRMD 243 AK FL+G N + ++ M A+ +E A +RD++ AL + + +D Sbjct: 198 AKLFLAGKNQQVIGELVGKMESASGDLRFEEAARYRDQIQALRRVTEQQSVSGNVLDDLD 257 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT----DKPC 299 + + ACI F G+ G+ ++F K S++ +++ FL QFY + Sbjct: 258 VIGVAFEQGAACIHVLFIRQGKVLGSRSYFPKVPSDTPLEEVVQSFLLQFYLSGQGGRQI 317 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P +LL E+ +L+ + + GYKV++ + E+ + I+ A INA + +L+ + Sbjct: 318 PSEVLLDVALEDETLIADTLSQTAGYKVRVVSRTRAERARFIKLASINAETALRSRLAHK 377 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + + L R+E YD SH MG V VV G + ++YR+FN+ Sbjct: 378 STTTARFSQLEELLELERPIARMECYDISHTMGERTVASCVVFNREGPLSSEYRRFNI-- 435 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA- 478 + + DD A M VLERRF +L + ++ PDV+ +DGG GQL Sbjct: 436 DGITGGDDYAAMEQVLERRFGKLQEPDK---------------VPDVLFIDGGLGQLRRA 480 Query: 479 --AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRD 535 ++ ++ IAKG R AG+E + + E L L P L+ IQ +RD Sbjct: 481 EEILARQQEFLGGKYPLLVGIAKGVTRKAGLETLIMGESHEELHLPADMPALHLIQHIRD 540 Query: 536 EAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E+HRFAIT HR RR KA S L++I G+GP R++ LL+ G ++ + ++ + LA + G Sbjct: 541 ESHRFAITGHRARRAKARTSSTLEDIPGVGPKRRQALLKYLGGLQEVKKAGVDDLAKVPG 600 Query: 595 ISKKIACKIYNHFH 608 IS+++A I++ Sbjct: 601 ISQELAQSIHDALR 614 >gi|238895471|ref|YP_002920206.1| excinuclease ABC subunit C [Klebsiella pneumoniae NTUH-K2044] gi|330001010|ref|ZP_08303870.1| excinuclease ABC, C subunit [Klebsiella sp. MS 92-3] gi|238547788|dbj|BAH64139.1| excinuclease ABC subunit C [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328537814|gb|EGF64009.1| excinuclease ABC, C subunit [Klebsiella sp. MS 92-3] Length = 610 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 209/618 (33%), Positives = 337/618 (54%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++ I I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVALIAQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FL+G + + ++ M +A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLAGKDDQVLTQLIARMEKASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G ++ + +G++ + ++ A NA + T K Sbjct: 310 MRTLPGEILLDFNLGDKTLLADSLSELAGRRINVQTKPRGDRARYLKLARTNAATALTTK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L+ LP + R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTIHQRLQALASVLELPAVK-RMECFDISHTMGEQTVASCVVFDSNGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I + + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDNK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V ++ ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKAVFAELDVPWDKHHPLLLGVAKGSDRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI+ HRK+R K S L+ I G+GP R+++LL+ G ++ + ++S E +A Sbjct: 532 HIRDESHDHAISGHRKKRAKVKSTSSLETIEGVGPKRRQMLLKYMGGLQGLQQASVEEIA 591 Query: 591 SIEGISKKIACKIYNHFH 608 + GIS +A KI+ Sbjct: 592 KVPGISHALAEKIFYSLK 609 >gi|119367629|sp|Q2KXM9|UVRC_BORA1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C Length = 607 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 213/614 (34%), Positives = 323/614 (52%), Gaps = 29/614 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+ LD AG V+YVGKA +L+KR+ SY + RI M+S++ + TVT Sbjct: 13 DLPHLPGVYRHLDAAGEVMYVGKARDLKKRVSSYFQKTLASPRIAQMVSKVVRLEVTVTR 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EAL+LE N+IK L+PR+NIL RDDKS+PY+LIT H+ P + +R S++ +G YFGP Sbjct: 73 SEAEALILENNLIKSLRPRYNILFRDDKSYPYLLIT-AHEWPRIAYYRGSTSKRGQYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + + AV +TI LQ+ F LR+C D+VF +R+RPCLL+QI RCSGPC I +E Y V Sbjct: 132 YPNSWAVRETIQILQKVFRLRTCEDTVFANRSRPCLLYQIGRCSGPCVQAIDAEDYRRDV 191 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNR 241 A +FL+G + ++I M QA+ + +E A + RD++ +LS + + + Sbjct: 192 QRAARFLNGEAREVMDEIEARMQQASGELRFEEAAVLRDQMGSLSKVLHQQTMENVGGED 251 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D ++ C+ G++ G FF AQ+ F+ Q Y D P Sbjct: 252 TDVIAVASAGGKVCVNLAMVRGGRHLGDKPFFPSHADGEEAAQVQEAFIAQHYADNVLPP 311 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 ++ S + L+ +Q G + ++ QG +R +EQA NA + + L+ + Sbjct: 312 VLVCSHALPDVDLI-GLLSEQAGTRCRVLTRPQGVRRSWLEQAQKNAEMALARALTESGA 370 Query: 362 HQMILKDFTKKFALPHIPK-----RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + L RIE +D SH G + VV + + YR++N Sbjct: 371 RAARTLSLAEALDLDTDEAALDALRIECFDISHTAGEATQASCVVFLHHDMQPSLYRRYN 430 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + DD A MR VL RRF+++ E P +V++DGGKGQ+ Sbjct: 431 IVG--ITPGDDYAAMRQVLTRRFAKVTDGE--------------APMPGLVLIDGGKGQV 474 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRD 535 A+ V +L ++ ++ +AKG R G+E L L L I ++RD Sbjct: 475 EVARQVFVELGLDIG-ALVGVAKGEGRKVGLETLVFADARAPLALGKASAALMLIAQVRD 533 Query: 536 EAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFAIT R +R K S L+EI G+G R++ LL FG + ++ +S E LAS++G Sbjct: 534 EAHRFAITGMRAKRAKTRNVSRLEEIEGVGAKRRQRLLARFGGLSGVTSASIEDLASVDG 593 Query: 595 ISKKIACKIYNHFH 608 IS +A +IY+ H Sbjct: 594 ISMDLAERIYDALH 607 >gi|16760892|ref|NP_456509.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141416|ref|NP_804758.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213053517|ref|ZP_03346395.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426360|ref|ZP_03359110.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580419|ref|ZP_03362245.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213650332|ref|ZP_03380385.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289824068|ref|ZP_06543666.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|21264111|sp|Q8Z5T3|UVRC_SALTI RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|25300672|pir||AD0749 excinuclease ABC chain C STY2154 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503189|emb|CAD05695.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhi] gi|29137043|gb|AAO68607.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 610 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 212/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI +I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYT 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M +A+ +E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTEKQFVSNAG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G ++ + +G++ + ++ A NA + K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALVTK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP I R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTITQRLTALATVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I+ + PDV+++DGGKGQ Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V ++R ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|317491609|ref|ZP_07950045.1| excinuclease ABC [Enterobacteriaceae bacterium 9_2_54FAA] gi|316921156|gb|EFV42479.1| excinuclease ABC [Enterobacteriaceae bacterium 9_2_54FAA] Length = 610 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 216/618 (34%), Positives = 336/618 (54%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D V+YVGKA +L+KR+ SY N + + ++ I I TV Sbjct: 11 LKTVTHQPGVYRMYDATETVIYVGKAKDLKKRLSSYFRQNVGSRKTETLVKNIAQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPLIFLS-ADTHPRLSIHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNSYAVRETLALLQKLFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVKGLVSDEEYE 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IY 239 + V+ + FLSG ++ + E + M A+ +E A RD++ A+ + Sbjct: 190 QQVNYVRLFLSGKDNQVLESLVVRMEDASKALKFEEAARIRDQIQAVRRVTEKQFVSGNS 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K S + ++++ F+ QFY Sbjct: 250 DDLDVIGVAFDSGMACVHVLFIRQGKILGSRSYFPKVPSGTELSEVVQTFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL E +L S + G KV I +G++ + ++ A NA + + K Sbjct: 310 IRTLPGEILLDFTLPEKDILSDSISELAGRKVNIQTRPRGDRARYLKLAKTNAQTALSTK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L + K L R+E +D SH MG V VV NG V+++YR++ Sbjct: 370 LSQQSTIHQRLTELEKVLHLS-DIHRMECFDISHTMGEETVASCVVFDRNGPVRSEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ N + DD A M VL RR+ + ++ ++ PDV+ +DGGKGQ Sbjct: 429 NI--NGITPGDDYAAMNQVLRRRYGKALEEDK---------------IPDVIFIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L A+ V +L+V ++R ++ IAKG R AG+E F+ +GE L P L+ IQ Sbjct: 472 LGQAKEVFSELDVPWDKHRPLLLGIAKGSDRKAGLETLFLQPEGEGFSLPPDSPALHLIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RD++H AIT HRK+R K S L+ I G+GP R++ LL+ G ++ + +S E +A Sbjct: 532 HIRDDSHNHAITGHRKKRAKVRNTSSLETIEGVGPKRRQTLLKYMGGLQPLMNASVEEIA 591 Query: 591 SIEGISKKIACKIYNHFH 608 + GIS+ +A KI+N Sbjct: 592 KVPGISQALAEKIHNALK 609 >gi|167628788|ref|YP_001679287.1| excinuclease abc, c subunit [Heliobacterium modesticaldum Ice1] gi|167591528|gb|ABZ83276.1| excinuclease abc, c subunit [Heliobacterium modesticaldum Ice1] Length = 635 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 208/622 (33%), Positives = 327/622 (52%), Gaps = 22/622 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 + +PE PGVY D AG+V+YVGKA NL+ R++SY S+ N + ++++I ++ Sbjct: 8 KLKSLPEKPGVYLYKDEAGQVIYVGKAINLKNRVRSYFQSSRNLNAKTQALVARICDLET 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK KPR+NI+LRDDK++PY+ +T + P L R Sbjct: 68 IVTDSELEALILECNLIKEHKPRYNIMLRDDKTYPYLKVTLQETYPRLLITRRLEKDGAK 127 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGP+ S AV +T+ L+ F LR+C+ R RPCL I RC PC G + +Y Sbjct: 128 YFGPYTSAGAVRETVELLRTLFPLRTCSRREPDRRQRPCLNHHIGRCLAPCAGRVPRREY 187 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 M + FL G L++++ M +A ++E A R+R+ AL + Sbjct: 188 MALIGSIVAFLEGKEEELRKRLQGEMEEAAENLEFERAATLRNRIRALDQVMEKQKVFST 247 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D ++ N C+Q F G+ G + L+ E +++++ F++Q+Y+ Sbjct: 248 DLADQDVIAMARGFNQVCVQIFFIRGGKLLGREHYILEGTDEMDRSEVITAFVKQYYSRS 307 Query: 298 P-CPENILLS---EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----H 349 P ILL E AEE L+ ++ +V++ VPK+G+K K++E NA Sbjct: 308 DFVPREILLQEPLESAEEEELINRFLREKRQGRVELRVPKRGDKLKLVEMVAKNALLTLE 367 Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 + ++ + + + D + L P RIE +D S+ MG +V MVV K Sbjct: 368 QLQNEQQRKKSMTEEAVLDLQRYLGLDEPPWRIECFDISNTMGKESVASMVVFEGGAPKK 427 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVI 468 + YR+F + V+ +D A M VL RRF++ + E H F + PD+VI Sbjct: 428 SDYRRFRIKT--VEGPNDFASMAEVLTRRFNRAREEAREVDAGHLDPMSAKFATLPDLVI 485 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 +DGGKGQLS+A+ + + +N I +AK + F + ++L LY Sbjct: 486 VDGGKGQLSSAREAMARTGYDN-IATYGLAKENEW-----LFHESNPDPIILPRGSRALY 539 Query: 529 FIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 IQR+RDEAHRFAIT HR+ R +A S LD I GIGP R+ LL+ FG+VK I+ ++ Sbjct: 540 LIQRIRDEAHRFAITYHRQLRTRAQTASALDGIAGIGPKRRTALLRHFGSVKAIAAATVA 599 Query: 588 TLASIEGISKKIACKIYNHFHK 609 LA++EG+++ +A ++ + Sbjct: 600 QLAAVEGMTEALAEQVLSALKP 621 >gi|288934572|ref|YP_003438631.1| excinuclease ABC, C subunit [Klebsiella variicola At-22] gi|288889281|gb|ADC57599.1| excinuclease ABC, C subunit [Klebsiella variicola At-22] Length = 610 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 209/618 (33%), Positives = 336/618 (54%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++ I I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVALIAQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FL+G + + ++ M +A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLAGKDDQVLTQLIARMEKASQSLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 250 DDLDVIGVAFEAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G ++ + +G++ + ++ A NA + T K Sbjct: 310 MRTLPGEILLDFSLGDKTLLAESLSELAGRRINVQTKPRGDRARYLKLARTNAATALTTK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L+ + + L+ LP + R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LAQQSTIHQRLQALATVLELPAVK-RMECFDISHTMGEQTVASCVVFDSNGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+S+ I + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYSKAIDENK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V ++ ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKAVFAELDVPWDKHHPLLLGVAKGSDRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI+ HRK+R K S L+ I G+GP R+++LL+ G ++ + ++S E +A Sbjct: 532 HIRDESHDHAISGHRKKRAKVKSTSSLETIEGVGPKRRQMLLKYMGGLQGLQQASVEEIA 591 Query: 591 SIEGISKKIACKIYNHFH 608 + GIS +A KI+ Sbjct: 592 KVPGISHGLAEKIFYSLK 609 >gi|300114139|ref|YP_003760714.1| excinuclease ABC subunit C [Nitrosococcus watsonii C-113] gi|299540076|gb|ADJ28393.1| excinuclease ABC, C subunit [Nitrosococcus watsonii C-113] Length = 599 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 227/611 (37%), Positives = 347/611 (56%), Gaps = 25/611 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + CPGVY+MLD G+VLYVGKA NL++R+ SY ++ +I +++QI NI+ TV Sbjct: 10 LKNLTACPGVYRMLDAKGKVLYVGKAKNLKRRVGSYFRNSKLAPKIRILVNQIYNIKITV 69 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EAL+LE N+IK L+PR+N+LL+DDKS+PYI ++ P L HR + G YF Sbjct: 70 THTENEALILENNLIKALQPRYNVLLKDDKSYPYIFLS-ADDFPHLGFHRGAKQAPGQYF 128 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ SV +V +T+ LQ F +R C D+ +R+R+RPCL +QIKRC+ PC G IS E Y + Sbjct: 129 GPYPSVSSVWQTLKLLQGVFPVRQCEDNFYRNRSRPCLQYQIKRCTAPCVGLISKEDYNQ 188 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYN 240 + FL G + + ++ M +A+ + +E A +RDR+A+L IQ Sbjct: 189 DIQHVVMFLKGRDQQVINELVIRMEEASQQLAFEQAAYYRDRVASLRRIQARQYISGKKM 248 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 +D + + +AC++ F G N G TF K + T ++LS F+ Q+Y ++ P Sbjct: 249 DIDVLGVILAERMACVEVFFIRGGYNLGNKTFLPKLEGNLTPQELLSAFIAQYYLNREIP 308 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 ++LS + ++ +LL +Q G K+ + P +G K + ++ AL NA + Q L+ + Sbjct: 309 PVLVLSHQPKDMNLLTEVLSEQAGRKITLIKPDRGPKVQWVKMALTNAKINLDQCLAKKS 368 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S K + L + P+RIE +D SHI G S V +V G YR+FN+ Sbjct: 369 SIAARFKSLQRLLNLVNSPQRIECFDISHIQGTSTVASCIVFDREGPRNADYRRFNIKG- 427 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 + DD +R L RRF + +PD++++DGGKGQ++ A Sbjct: 428 -IIPGDDYGALRQALTRRFKK-----------------KEGIFPDLLVIDGGKGQINQAL 469 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHR 539 VL+++ V T++ IAKGP+R AG E F+ +++ P L+ +Q +RDEAHR Sbjct: 470 TVLEEIGVIET-TVLGIAKGPERKAGKETLFLAGYENPIMVTPDSPALHLLQHIRDEAHR 528 Query: 540 FAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAI HRKRR + S L+EI G+GP R+R LL G ++ I R+ E LA I+GI+ Sbjct: 529 FAIINHRKRRARGGKLSRLEEIPGLGPKRRRKLLIQLGGLQEIMRAGVEDLAQIKGINLV 588 Query: 599 IACKIYNHFHK 609 +A +IY+ H+ Sbjct: 589 LAQRIYDILHR 599 >gi|268592485|ref|ZP_06126706.1| excinuclease ABC subunit C [Providencia rettgeri DSM 1131] gi|291311889|gb|EFE52342.1| excinuclease ABC subunit C [Providencia rettgeri DSM 1131] Length = 610 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 214/619 (34%), Positives = 331/619 (53%), Gaps = 31/619 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D V+YVGKA +L+KR+ SY N + + ++ QI +I TV Sbjct: 11 LKTVTNQPGVYRMYDAGETVIYVGKAKDLKKRLASYFRENVGSRKTEQLVKQIASIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+PY+ ++ P + HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPYLFLS-SETHPRISMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF S AV +T+ +Q+ F +R C DS++R+R+RPCL +QI RC GPC +S E Y Sbjct: 130 GPFPSSYAVRETLALMQKLFPIRQCEDSMYRNRSRPCLQYQIGRCLGPCVKGLVSDEDYN 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IY 239 + V + FL+G + + + M +A+L+ +E A RD++ A+ + Sbjct: 190 QQVEYVRLFLTGKDKQVLAGLVDRMEKASLELRFEDAARFRDQIQAVRAVTEEQYVSGDS 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295 + +D + LAC+ F G+ G+ ++F K +++ +++ FL QFY Sbjct: 250 DDLDVIGVSFESGLACVHVLFIRQGKVLGSRSYFPKIPADTQLEEVVQTFLGQFYLQGSE 309 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ P ILL E LL S + G K+ I +G + + ++ A NA + + K Sbjct: 310 NRTLPGEILLDFALTEKELLAESLSEIAGRKIHIQSQPRGVRARYLKLARTNASIALSTK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L+ + Q ++ K L R+E +D SH MG V VV ++G VK++YR++ Sbjct: 370 LAQHSTVQQRMEALAKVVNLE-NINRMECFDISHTMGEQTVASCVVFDKSGPVKSEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I + PD++ +DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMHQVLTRRYGKHIDESK---------------VPDIIFIDGGKGQ 471 Query: 476 LSAAQGVLKKLNVE---NRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L A+ V L V+ +I +AKG R AG+E F+ +GE L P L+ IQ Sbjct: 472 LGQARDVFNSLEVDWDKKHPLLIGVAKGSDRKAGLETLFLKPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AIT HR+RR K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHNHAITGHRQRRAKVKSTSALESIEGVGPKRRQMLLKYMGGLQPLRNASIEEIA 591 Query: 591 SIEGISKKIACKIYNHFHK 609 + IS +A KIYN + Sbjct: 592 KVPSISYALAEKIYNALKQ 610 >gi|204931075|ref|ZP_03221901.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320119|gb|EDZ05324.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 610 Score = 531 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 212/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI +I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYT 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M +A+ +E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTEKQFVSNAG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G ++ + +G++ + ++ A NA + K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALVTK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP I R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTITQRLTALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I+ + PDV+++DGGKGQ Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V ++R ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|157375591|ref|YP_001474191.1| excinuclease ABC subunit C [Shewanella sediminis HAW-EB3] gi|189038096|sp|A8FW40|UVRC_SHESH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|157317965|gb|ABV37063.1| excinuclease ABC, C subunit [Shewanella sediminis HAW-EB3] Length = 609 Score = 531 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 207/616 (33%), Positives = 331/616 (53%), Gaps = 28/616 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY N + ++S I NI TV Sbjct: 11 LKTVSSSPGVYRMYDEEGTVIYVGKAKDLKKRLSSYFRVNLPNVKTQALVSHIANIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E +AL+LE + IK+ PR+N+LLRDDKS+PYIL++ HK P L HR +GSYF Sbjct: 71 THSETDALILENDYIKQYMPRYNVLLRDDKSYPYILLS-DHKHPRLAYHRGPKRDKGSYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + AV ++++ LQ+ F +R C D ++ R+RPCL +QI RCS PC ++S E+Y Sbjct: 130 GPYPNGGAVRESLHLLQKIFPIRQCDDLYYKSRSRPCLQYQIGRCSAPCVNKVSDEEYAV 189 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYN 240 V A FL G + + ++ M + L +YE A +RD++AAL + + Sbjct: 190 QVKLASLFLKGKDLQVMTELVSKMEASALALEYEQAASYRDQIAALRRVAEQQEVSNTSG 249 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD---- 296 MD Y+ +AC F G+ G+ +++ +E+ ++LS F+ QFY + Sbjct: 250 DMDVIGAYYASGVACFHLLFIREGKIFGSRSYYPSVPAETELDEVLSAFMIQFYLNSDSQ 309 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 + P+ ILLS ++ LE + KV+I + E+ + A+ NA + +L Sbjct: 310 RTVPKEILLSHGFDDLPELERAIQTALEKKVEIKTNVRSERANFLRLAVTNATNAVNTRL 369 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 S + + + + + + +R+E +D SH MG S V VV G K YR++N Sbjct: 370 SHKNTVEQRFLLLEEALEVSTLIQRMECFDISHTMGESTVASCVVFDREGPNKADYRRYN 429 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + N + DD A M+ + RRF ++ KN + PD++ +DGG GQL Sbjct: 430 I--NGITPGDDYAAMKQAITRRFDKIDKNGK---------------IPDLLFIDGGTGQL 472 Query: 477 SAAQGVLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRL 533 AQ ++ + ++++ +I +AKG R G+E + E + + L+ IQ + Sbjct: 473 RIAQKIVDEKFVDIDKTPMLIGVAKGEGRKPGLETLIYGENEQSFTIPADSGALHLIQHI 532 Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDE+HRFAIT HR +R+K S L+ I G+GP R++ LLQ G ++ + +S LA + Sbjct: 533 RDESHRFAITGHRNKRQKTRNTSTLESIAGVGPKRRKALLQYLGGIQEVKGASVAELAKV 592 Query: 593 EGISKKIACKIYNHFH 608 GIS ++A I++ Sbjct: 593 PGISLEMAQTIHDSLR 608 >gi|161613493|ref|YP_001587458.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|189038085|sp|A9MU69|UVRC_SALPB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|161362857|gb|ABX66625.1| hypothetical protein SPAB_01210 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 610 Score = 531 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 212/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI +I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLSMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYT 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M +A+ +E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTEKQFVSNAG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G ++ + +G++ + ++ A NA + K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALITK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP I R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTITQRLTALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I+ + PDV+++DGGKGQ Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V ++R ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|56413139|ref|YP_150214.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362065|ref|YP_002141702.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|81360622|sp|Q5PI10|UVRC_SALPA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|229557862|sp|B5BGC1|UVRC_SALPK RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|56127396|gb|AAV76902.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093542|emb|CAR59004.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 610 Score = 531 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 211/614 (34%), Positives = 335/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI +I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYT 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M +A+ +E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTEKQFVSNAG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G ++ + +G++ + ++ A NA + K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALITK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP I R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTITQRLTALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I+ + PDV+++DGGKGQ Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V ++ ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKAVFAELDVPWDKHCPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|212635585|ref|YP_002312110.1| excinuclease ABC subunit C [Shewanella piezotolerans WP3] gi|226732393|sp|B8CPE7|UVRC_SHEPW RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|212557069|gb|ACJ29523.1| Excinuclease ABC, C subunit [Shewanella piezotolerans WP3] Length = 609 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 202/616 (32%), Positives = 331/616 (53%), Gaps = 28/616 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D+ V+YVGKA +L+KR+ SY N + ++++I NI T+ Sbjct: 11 LKTVTSSPGVYRMYDVDNIVIYVGKAKDLKKRLSSYFRKNLTNVKTQALVARIANIDVTI 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E +AL+LE + IK+ P++N+LLRDDKS+PYIL+++ HK P L HR +G YF Sbjct: 71 THSETDALILENDYIKQYMPKYNVLLRDDKSYPYILLSN-HKHPRLSYHRGPKRAKGQYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + AV ++++ LQ+ F +R C D ++ R+RPCL +QI RCS PC +S + Y E Sbjct: 130 GPYPNGGAVRESLHLLQKIFPIRQCDDLYYKARSRPCLQYQIGRCSAPCVDNVSLKDYQE 189 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--N 240 V A FL G + + + + M QA ++ +YE A +RD++ AL + + + Sbjct: 190 QVALASLFLKGKDQQVTKALVAKMEQAAVELNYEQAARYRDQITALRRVAEQQEVSHSSG 249 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC- 299 MD + +AC F G+ G+ +++ K ++ +++L F+ QFY + Sbjct: 250 DMDVIGAHFASGVACFHLLFIREGKIFGSRSYYPKVPVDTELSEVLRAFMFQFYLNSDSQ 309 Query: 300 ---PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P+ IL+S+ EE + L + KV+I +GE+ + + AL NA + +L Sbjct: 310 RVTPKEILVSDAFEEQAELAGAINTAQQRKVEIKSQVRGERAQFLRLALTNATNAVNTRL 369 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + + + + + H +R+E +D SH MG S V VV G K YR++N Sbjct: 370 AHRNTVEQRFLLLEEAIEVSHKIQRMECFDISHTMGESTVSSCVVFNREGPNKADYRRYN 429 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + DD A M+ + RRF ++ K + PD++ +DGG GQL Sbjct: 430 IEG--ITPGDDYAAMKQAISRRFDKVAKAGKT---------------PDILFIDGGIGQL 472 Query: 477 SAAQGVLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRL 533 AQ V+ + + +++ T+I +AKG R G+E + E L L+ IQ++ Sbjct: 473 RIAQKVVDEKFVALDHAPTLIGVAKGEGRKPGLETLIYGENEESFTLPADSGALHLIQQI 532 Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDE+HRFAIT HR +R+K S L+ I G+GP R++ LLQ G ++ + +S L + Sbjct: 533 RDESHRFAITGHRNKRQKTRNTSTLESIEGVGPKRRKALLQHLGGLQEVKSASVTELVKV 592 Query: 593 EGISKKIACKIYNHFH 608 GIS ++A I++ Sbjct: 593 PGISLEMAQTIHDALR 608 >gi|262043445|ref|ZP_06016568.1| excinuclease ABC subunit C [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039187|gb|EEW40335.1| excinuclease ABC subunit C [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 610 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 208/618 (33%), Positives = 335/618 (54%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++ I I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVALIAQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FL+G + + ++ M +A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLAGKDDQVLTQLIARMEKASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G ++ + +G++ + ++ A NA + T K Sbjct: 310 MRTLPGEILLDFNLGDKTLLADSLSELAGRRINVQTKPRGDRARYLKLARTNAATALTTK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L+ LP + R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTIHQRLQALASVLELPAVK-RMECFDISHTMGEQTVASCVVFDSNGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I + + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDNK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNVENR---ITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L++ ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKAVFAELDIPWDKYHPLLLGVAKGSDRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI+ HRK+R K S L+ I G+GP R+++LL+ G ++ + ++S E +A Sbjct: 532 HIRDESHDHAISGHRKKRAKVKSTSSLETIEGVGPKRRQMLLKYMGGLQGLQQASVEEIA 591 Query: 591 SIEGISKKIACKIYNHFH 608 + GIS +A KI+ Sbjct: 592 KVPGISHALAEKIFYSLK 609 >gi|110834166|ref|YP_693025.1| excinuclease ABC subunit C [Alcanivorax borkumensis SK2] gi|119367621|sp|Q0VPZ5|UVRC_ALCBS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|110647277|emb|CAL16753.1| excinuclease ABC, C subunit [Alcanivorax borkumensis SK2] Length = 607 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 216/609 (35%), Positives = 329/609 (54%), Gaps = 23/609 (3%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 PGVY+MLD G VLYVGKA NLQ R+ SY N + + ++ +I +I+ TVT +EV Sbjct: 15 RKPGVYRMLDAEGGVLYVGKARNLQARLNSYFQKNVASVKTRALVGRIRDIQTTVTGSEV 74 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EALLLE ++IK LKP +NILLRDDKS+PYI IT + P + HR + YFGP+ S Sbjct: 75 EALLLEQSLIKELKPPYNILLRDDKSYPYIRITRSDRFPRVTFHRGTRRAGSQYFGPYPS 134 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 AV + ++ +++ F +R+C+DS FR+RTRPCL QI RC+ PC G +S E Y V A Sbjct: 135 GSAVREALSLIEKIFQVRNCSDSYFRNRTRPCLQHQINRCTAPCVGLVSEEDYARQVTMA 194 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--DCF 245 FL G + + ++++ +M A ++E A + RD+LAA+ +Q + + D Sbjct: 195 ADFLDGRSREVADQLSTDMEAAAAALEFEKAALLRDQLAAIQAVQQKQYAETGQGDLDVV 254 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPE 301 ++ LA I+ G+ G TF T E ++IL FL Q+Y D P+ Sbjct: 255 AIETRHGLAIIEVLMIRDGRILGHRTFRPDTRGEDDRSEILEAFLSQYYLGDREDPVKPQ 314 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 ILL E L+ + +Q+ KV++ + ++ I A NA +S +++ Sbjct: 315 EILLCMEIPGAEALQQALEEQWAKKVRLAWRVRSDRAAWISMAQTNAQQSMATEMAAREH 374 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 + +RIE +D SH G AV VV + G K YR FN++P Sbjct: 375 MEARFLALETLLESSEPIRRIECFDISHTQGEKAVASCVVFDQQGARKQDYRYFNVNPA- 433 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 DD + + RR+ +++K + PD++++DGGKGQ+ Sbjct: 434 -AGGDDYEALEEAIRRRYQRVLKEQ--------------GRMPDLLLIDGGKGQMQRGWK 478 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 V+++L++ I ++ I KGP R G E ++ G+ ++ D L+ +Q++RDEAHRFA Sbjct: 479 VVQELDLHASIRVMGIGKGPSRRPGFEALYLPCGKEMIPGPADSALHLLQQVRDEAHRFA 538 Query: 542 ITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 +T HR RR KA S LDEI GIGP R++ LL FG +K + +S A + GI+ ++A Sbjct: 539 LTGHRARRGKARKQSTLDEIPGIGPKRRKALLTHFGGLKQMRNASASEFARVPGINSQMA 598 Query: 601 CKIYNHFHK 609 +Y+ FH+ Sbjct: 599 QTLYDWFHR 607 >gi|320085436|emb|CBY95217.1| UvrABC system protein C Protein uvrC; Excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 610 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 212/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI +I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYT 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M +A+ +E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTEKQFVSNAG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G ++ + +G++ + ++ A NA + K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALITK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP I R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTITQRLTALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I+ + PDV+++DGGKGQ Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V ++R ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|167552827|ref|ZP_02346578.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322660|gb|EDZ10499.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 610 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 212/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI +I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M +A+ +E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTERQFVSNAG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G ++ + +G++ + ++ A NA + K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALVTK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP I R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTITQRLTALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I+ + PDV+++DGGKGQ Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V ++R ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|168239181|ref|ZP_02664239.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194738201|ref|YP_002114979.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|229557863|sp|B4TYW7|UVRC_SALSV RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|194713703|gb|ACF92924.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288075|gb|EDY27462.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 610 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 212/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI +I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYT 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M +A+ +E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTERQFVSNAG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G ++ + +G++ + ++ A NA + K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALITK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP I R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTITQRLTALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I+ + PDV+++DGGKGQ Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V ++R ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|85712392|ref|ZP_01043442.1| excinuclease ABC subunit C [Idiomarina baltica OS145] gi|85693835|gb|EAQ31783.1| excinuclease ABC subunit C [Idiomarina baltica OS145] Length = 605 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 204/612 (33%), Positives = 330/612 (53%), Gaps = 27/612 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY+M D +G V+YVGKA +L+KR+ SY + ++ QI ++ TVT Sbjct: 13 HLTHQPGVYRMYDESGDVIYVGKAKDLRKRVSSYFREKVDRVKTQVLVKQIADMDVTVTN 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EAL+LE IK+ +PR+N+LLRDDKS+PYI++T H P L HR + +G YFGP Sbjct: 73 TEAEALILENTFIKKYRPRYNVLLRDDKSYPYIIMT-DHTHPRLGFHRGARRQKGEYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F + AV +++ +Q+ F +R C D+ +R R+RPCL +Q+KRC PC + E+Y E V Sbjct: 132 FPNGAAVRESLRLMQKLFPIRQCEDAYYRARSRPCLQYQLKRCLAPCVNVCTDEEYDEQV 191 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRM 242 A++FL+G N + +++ M A+ D+E A +RD++A L Q N + Sbjct: 192 QLARQFLNGKNQQVIDQLVTRMENASESLDFERAARYRDQIAMLRRTQERNSVTGAQEEL 251 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC--- 299 D + +Q F +G+ ++F K +++++ ++L FL QFY ++ Sbjct: 252 DVIGFARGNGVTTVQMLFIRDNHLQGSRSYFPKVPADTSDEEVLQAFLLQFYLNQSSGRK 311 Query: 300 -PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P I+L +E + +L + G KV++ +GE+++ + A NA + KL+ Sbjct: 312 TPAEIVLPDEIKHDPVLGEVLGEAVGRKVRLLHNVRGERKQYQQLAKKNAVNALEGKLNQ 371 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + + + L +R+E +D SH MG V VV +NG K+ YR++N+ Sbjct: 372 QSTMNRRTSALQQVLELGIPIQRMECFDISHTMGQQTVASCVVFDQNGPKKSDYRRYNI- 430 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + DD A M L +R+ +N + PD++ +DGGKGQL+ Sbjct: 431 -TGITPGDDYAAMAKALAKRYDNAKEN---------------GNIPDILFIDGGKGQLAQ 474 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEA 537 A+ ++ +I +AKG R G+E + E + LN L+ IQ +RDE+ Sbjct: 475 AENYFADWG-KDAPMLIGVAKGESRKPGLETLIMAGSHETIPLNKDASALHLIQHIRDES 533 Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR++R K S L+EI GIG R++ +L++ G ++ + +S + LA++ GIS Sbjct: 534 HRFAITGHRQKRNKVKRTSSLEEIEGIGAKRRQKILKNLGGLQEVKNASIDQLANVPGIS 593 Query: 597 KKIACKIYNHFH 608 + +A KIY F Sbjct: 594 RALAEKIYYSFR 605 >gi|309789332|ref|ZP_07683922.1| excinuclease ABC, C subunit [Shigella dysenteriae 1617] gi|308922726|gb|EFP68243.1| excinuclease ABC, C subunit [Shigella dysenteriae 1617] Length = 610 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 213/614 (34%), Positives = 337/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + ++++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G K+ + +G++ + ++ A NA + T K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP + R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I + + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V +N ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 ++GIS+ +A KI+ Sbjct: 592 KVQGISQGLAEKIF 605 >gi|167993514|ref|ZP_02574608.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168462516|ref|ZP_02696447.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194445436|ref|YP_002041212.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194471853|ref|ZP_03077837.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197265516|ref|ZP_03165590.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|229557861|sp|B4SW54|UVRC_SALNS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|194404099|gb|ACF64321.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194458217|gb|EDX47056.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195634256|gb|EDX52608.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197243771|gb|EDY26391.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205328434|gb|EDZ15198.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261247111|emb|CBG24934.1| Excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993932|gb|ACY88817.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158461|emb|CBW17971.1| UvrABC system protein C [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|321224588|gb|EFX49651.1| Excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130225|gb|ADX17655.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988835|gb|AEF07818.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 610 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 212/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI +I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M +A+ +E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTEKQFVSNAG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G ++ + +G++ + ++ A NA + K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALITK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP I R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTITQRLTALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I+ + PDV+++DGGKGQ Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V ++R ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|206576376|ref|YP_002237712.1| excinuclease ABC, C subunit [Klebsiella pneumoniae 342] gi|290508772|ref|ZP_06548143.1| excinuclease ABC, C subunit [Klebsiella sp. 1_1_55] gi|226698354|sp|B5XPW9|UVRC_KLEP3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|206565434|gb|ACI07210.1| excinuclease ABC, C subunit [Klebsiella pneumoniae 342] gi|289778166|gb|EFD86163.1| excinuclease ABC, C subunit [Klebsiella sp. 1_1_55] Length = 610 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 208/618 (33%), Positives = 335/618 (54%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++ I I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVALIAQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FL+G + + ++ M +A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLAGKDDQVLTQLIARMEKASQSLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 250 DDLDVIGVAFEAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G ++ + +G++ + ++ A NA + T K Sbjct: 310 MRTLPGEILLDFSLGDKTLLAESLSELAGRRINVQTKPRGDRARYLKLARTNAATALTTK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L+ + + L+ LP + R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LAQQSTIHQRLQALATVLELPAVK-RMECFDISHTMGEQTVASCVVFDSNGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDENK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V ++ ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKAVFAELDVPWDKHHPLLLGVAKGSDRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI+ HRK+R K S L+ I G+GP R+++LL+ G ++ + ++S E +A Sbjct: 532 HIRDESHDHAISGHRKKRAKVKSTSSLETIEGVGPKRRQMLLKYMGGLQGLQQASVEEIA 591 Query: 591 SIEGISKKIACKIYNHFH 608 + GIS +A KI+ Sbjct: 592 KVPGISHGLAEKIFYSLK 609 >gi|205352358|ref|YP_002226159.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|226698794|sp|B5R896|UVRC_SALG2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|205272139|emb|CAR36992.1| UvrABC system protein C [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326627409|gb|EGE33752.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 610 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 212/614 (34%), Positives = 335/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI +I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M +A+ +E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTEKQFVSNAG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G + + +G++ + ++ A NA + K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRSIHVQTKPRGDRARYLKLARTNAATALITK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP I R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTITQRLTALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I+ + PDV+++DGGKGQ Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V ++R ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLEILFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|200390430|ref|ZP_03217041.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199602875|gb|EDZ01421.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 610 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 212/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI +I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYT 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M +A+ +E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTEKQFVSNAG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G ++ + +G++ + ++ A NA + K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSEFAGRRIHVQTKPRGDRARYLKLARTNAATALITK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP I R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTITQRLTALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I+ + PDV+++DGGKGQ Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V ++R ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKAVFAELDVPWDKHRPLLLGVAKGTDRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|62180519|ref|YP_216936.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224583553|ref|YP_002637351.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912481|ref|ZP_04656318.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|75482712|sp|Q57N56|UVRC_SALCH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|254764942|sp|C0Q2A7|UVRC_SALPC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|62128152|gb|AAX65855.1| UvrC with UvrAB is a DNA excision repair enzyme [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224468080|gb|ACN45910.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322714995|gb|EFZ06566.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 610 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 212/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI +I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M +A+ +E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTERQFVSNAG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G ++ + +G++ + ++ A NA + K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALITK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP I R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTITQRLTALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I+ + PDV+++DGGKGQ Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V ++R ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|16765284|ref|NP_460899.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|20141853|sp|O66041|UVRC_SALTY RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|16420480|gb|AAL20858.1| UvrC [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|312912936|dbj|BAJ36910.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] Length = 610 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 212/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI +I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M +A+ +E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTEKQFVSNAG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G ++ + +G++ + ++ A NA + K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALITK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP I R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTITQRLSALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I+ + PDV+++DGGKGQ Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V ++R ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|198244405|ref|YP_002215140.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|226698792|sp|B5FRY5|UVRC_SALDC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|197938921|gb|ACH76254.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 610 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 212/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI +I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M +A+ +E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTERQFVSNAG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G ++ + +G++ + ++ A NA + K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALITK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP I R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTITQRLTALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I+ + PDV+++DGGKGQ Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V ++R ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|294636768|ref|ZP_06715107.1| excinuclease ABC subunit C [Edwardsiella tarda ATCC 23685] gi|291090027|gb|EFE22588.1| excinuclease ABC subunit C [Edwardsiella tarda ATCC 23685] Length = 610 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 212/619 (34%), Positives = 337/619 (54%), Gaps = 31/619 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M + G V+YVGKA +L+KR+ SY + + ++ QI +I TV Sbjct: 11 LKTVTSQPGVYRMYEAGGEVIYVGKAKDLKKRLSSYFRRQLASRKTEALVRQIAHIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IKR +PR+N+LLRDDKS+P I ++ + P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKRYQPRYNVLLRDDKSYPLIYLS-AERHPRLTVHRGAKRARGDYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C DSV+R+R+RPCL +QI+RC GPC +S +Y Sbjct: 130 GPFPNASAVRETLALLQKLFPIRQCEDSVYRNRSRPCLQYQIQRCLGPCVAGLVSDAEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IY 239 V + FLSG + + + + M +A+ +E A RD++ A+ + + Sbjct: 190 RQVDYVRLFLSGKDSQVVDALVARMEEASRALRFEEAARLRDQIQAVRRVTERQFISGDH 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + +AC+ F GQ G+ ++F + + + A+++ F+ QFY Sbjct: 250 DDIDVVGVAFEAGMACVHVLFIRQGQVLGSRSYFPRVPAGTELAEVVQTFIGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P IL+ E LL S + G ++ I +G++ + ++ A NA + + K Sbjct: 310 TRTLPGEILIDFALPERQLLAESISELAGRRIHIQSQPRGDRARYLKLARTNAATALSSK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L + +R+E +D SH +G V VV NG ++++YR++ Sbjct: 370 LSQQSTILQRLVQLEQVLQ-RADIQRMECFDISHTLGEETVASCVVFDRNGPLRSEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + + DD A MR VL RR+ + + +E+ PDV+ +DGGKGQ Sbjct: 429 NI--SGITPGDDYAAMRQVLRRRYGKALNDEK---------------IPDVIFIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V + R ++ IAKG R AG+E FFV GE L P L+ IQ Sbjct: 472 LAQAKEVFAELDVPWDKTRPLLLGIAKGSDRKAGLETLFFVPHGEGFSLAPDSPALHLIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI+ HRK+R K S L+ I GIGP R++ LL+ G ++ + +S + +A Sbjct: 532 HIRDESHNHAISGHRKKRAKVRNTSALESIEGIGPKRRQQLLKYMGGMQSLRDASVDEIA 591 Query: 591 SIEGISKKIACKIYNHFHK 609 + GIS +A KI+ + Sbjct: 592 KVPGISAALAEKIHYALKQ 610 >gi|197248145|ref|YP_002146077.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|226698355|sp|B5F2U1|UVRC_SALA4 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|197211848|gb|ACH49245.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 610 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 211/614 (34%), Positives = 335/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI +I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M +A+ +E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTERQFVSNAG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G ++ + +G++ + ++ A NA + K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALITK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP I R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTITQRLTALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I+ + PDV+++DGGKGQ Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V ++ ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKAVFAELDVPWDKHHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|296535210|ref|ZP_06897426.1| excision endonuclease subunit UvrC [Roseomonas cervicalis ATCC 49957] gi|296264462|gb|EFH10871.1| excision endonuclease subunit UvrC [Roseomonas cervicalis ATCC 49957] Length = 692 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 262/644 (40%), Positives = 363/644 (56%), Gaps = 44/644 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 MP PGVY+MLD G LYVGKA +L+KR+ +Y R+ M+ + T Sbjct: 41 TMPLSPGVYRMLDAKGEALYVGKARSLKKRVVAYTQLARLPERLRRMVHGTRRMEIITTG 100 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLEAN+IK+L+PRFNI+LRDDKS+P+++IT+ H P + KHR SY+GP Sbjct: 101 SEAEALLLEANLIKKLRPRFNIVLRDDKSYPWLVITEDHAYPQIAKHRGEKRKGASYWGP 160 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 FAS AV++T+ +LQ+ F LRSC D+VF R RPCLL QIKRC+ PC G IS Y V Sbjct: 161 FASAWAVDQTLTALQKVFLLRSCRDTVFDSRDRPCLLHQIKRCAAPCVGRISEADYAGLV 220 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 +AKKFLSG ++++ +A+ M QA ++E A RDR+ L+H+Q N + Sbjct: 221 RDAKKFLSGETPSIQKALAKEMEQAAESLEFERAAALRDRIRGLTHVQGQNAINLDGVGD 280 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSES-TNAQILSYFLRQFYTDKPCP 300 D +L+ +C+Q FF G+N G +FF + ++LS FL Q Y D P P Sbjct: 281 ADVIALHQIAGQSCVQVFFFRGGRNNGNRSFFPSHLKDDAEPEEVLSAFLTQLYDDLPPP 340 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 +LLS + L+ + + G KV++ P++GEKR+ +E A NA + ++L+ Sbjct: 341 PLVLLSHALPDAGLIAEALALKAGRKVELHAPQRGEKRQAVEHAATNAREALERRLAEGT 400 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 + +L+ K F LP P+RIEIYDNSHI G A G MVV G GF+KN YRK+ + Sbjct: 401 AQVALLEGVAKLFDLPEPPRRIEIYDNSHIQGSHAYGVMVVAGPEGFMKNAYRKYAIQGA 460 Query: 421 DVK-----------------------------TQDDCAMMRMVLERRFSQLIKNEENLNF 451 DD AMMR V ERRF + +K + Sbjct: 461 AAPRIPAPVAAEVPGALKETRAAGGGDRIASGGGDDFAMMREVFERRFGRALKEDPERQG 520 Query: 452 HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF 511 WPD+V++DGG GQLSAA+ V+ +L + + ++++AKGP R AG E F Sbjct: 521 EG---------WPDLVLIDGGAGQLSAAREVMAELGL-GDLNLVAVAKGPDRDAGREWFH 570 Query: 512 VKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRL 570 L L RDP+LY++QRLRDEAHRFAITTHR R KA S LDEI G+G KR Sbjct: 571 RDGHPPLQLPPRDPVLYYLQRLRDEAHRFAITTHRAGRSKAITRSELDEIPGVGSAIKRR 630 Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 LL FG+ + + ++ + L + GI +A +I+ HFH + Sbjct: 631 LLNHFGSARGVRQAGLDDLKNCPGIGPSMAVRIHEHFHPGAAGA 674 >gi|326382177|ref|ZP_08203869.1| excinuclease ABC subunit C [Gordonia neofelifaecis NRRL B-59395] gi|326198907|gb|EGD56089.1| excinuclease ABC subunit C [Gordonia neofelifaecis NRRL B-59395] Length = 681 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 183/645 (28%), Positives = 303/645 (46%), Gaps = 45/645 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA +L++R+ SY R M++ ++ +TV Sbjct: 13 TIPTDPGVYKFRDQHGRVIYVGKAKSLRQRLTSYFADITGLHPRTRQMVTTAASVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE N IK PRFN+ RDDKS+P + +T + P ++ +R + YFG Sbjct: 73 GTEVEALQLEYNWIKEFDPRFNVRYRDDKSYPMLAVTMNEEYPRVFVYRGARRPGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P+A A+ +T++ L R F +R+C+ VFR RPCLL I +CS PC G +S+ ++ Sbjct: 133 PYAHAWAIRETVDLLTRVFGVRTCSKGVFRRSEQMGRPCLLGYIDKCSAPCVGRVSAAEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 V + FL+G L K+ R M+ A + D+E A RD ++AL + Sbjct: 193 RAIVEDFCDFLAGRTDGLIRKLEREMSDAAEELDFERAARLRDDVSALRRAMEKQAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D ++ ++ ++ G+ RG + ++ ++ + + FL QFY D+ Sbjct: 253 SGTDADVIAMVGDELECSVKVFHVRDGRVRGERGWVVEVQENASLSDQVGTFLTQFYGDE 312 Query: 298 P-----CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 P +L+ ++ +E + G V + VP++G+KR ++ NA + Sbjct: 313 TDMSSGIPREVLVPALPDDAPDVEKWLAGRRGAHVSLRVPQRGDKRTLMTTVERNATEAL 372 Query: 353 TQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 + + L + L P RIE D SH+ G V +VV + Sbjct: 373 ARHKLQRAGDLTTRSAALTELQDALGLDVAPLRIECIDISHVQGTDVVASLVVFEDGLAR 432 Query: 409 KNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIK---------------------NE 446 K+ YR +++ + DD A + V RRF + Sbjct: 433 KSDYRHYSIKEAAGDGRSDDVASIAEVTRRRFLRHRDGAAAPPPEDTVQTGSADSGSGET 492 Query: 447 ENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAG 506 + ++ F P++ ++DGG Q AA VL +L V + + ++ +AK + Sbjct: 493 APDDDATSRKAKKFAYPPNLFVVDGGAPQAHAAASVLDELGVTD-VAVVGLAKRLE---- 547 Query: 507 MEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGP 565 E + E ++L L+ +QR+RDEAHRFAIT HR +R K S LD I G+G Sbjct: 548 -EVWIPGDDEPVILPRNSEALFLLQRVRDEAHRFAITFHRSKRSKRMTASALDGIAGLGA 606 Query: 566 LRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 R+ L+ FG+V + +++ E + ++GI A ++ + + Sbjct: 607 GRRTALVTHFGSVAKLKQATVEEIGEVKGIGPATAQAVHEALNPD 651 >gi|297626681|ref|YP_003688444.1| UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922446|emb|CBL57019.1| UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 664 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 192/633 (30%), Positives = 314/633 (49%), Gaps = 31/633 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D G+V+YVGKA NL+ R+ SY H + R M+ ++++TV Sbjct: 13 SIPTDPGVYRFSDEHGQVIYVGKAKNLRNRLNSYFHDISALHPRTQRMVRTAAHVQWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 E+E+L LE IK+ PRFNI+ RDDK++P++ +T + P +Y R + YFG Sbjct: 73 QNELESLQLEYTWIKQYDPRFNIMYRDDKTYPWLCVTWSDEYPRVYVGRGAKRKGYRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180 PF AV T++ L R F +RSC+ VFR+ RPCLL I +CS PC G +S+ ++ Sbjct: 133 PFGQAWAVRDTVDMLLRIFPMRSCSAGVFRNAQAARRPCLLGYIGKCSAPCVGRVSAAEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 E + F G L+ K+ + M QA E++E A + RD L AL N + Sbjct: 193 REIADDFCSFWEGRTRQLQHKLTKQMRQAAENEEFERAAVLRDSLGALDKATERNAVVLP 252 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D + + +Q G+ RG ++ ++ ++++ FL + Y+D Sbjct: 253 DGTDADAIAFALDPLELAVQVFHVRGGRIRGERSWIADRADDADESELVESFLLRLYSDS 312 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P IL+ +L +Q G +V + VP++G+KR +++ NA + + + Sbjct: 313 RVPHEILVPVMPPTAPVLTEMLGEQRGGRVNLHVPQRGDKRVLLDTVAKNATEALDRHKA 372 Query: 358 TE----ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + L++ LP +P RIE YD SH+ G VG MVV + +++YR Sbjct: 373 KRAADLATRNQALEELQGALGLPEVPLRIEGYDISHLQGTQVVGSMVVFEDGLSRRSEYR 432 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNF-----------HPKKQEYSFPS 462 +F + + DD M VL RRFS+LI + + + F Sbjct: 433 RFVIKS--FEGSDDLRAMDEVLTRRFSRLINDRRAMEEASRQGGPGLIDPETGKPLKFAY 490 Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522 P +V++DGG Q+ AAQ + L + + +I +AK + E + L+L Sbjct: 491 APSLVVIDGGPLQVEAAQNAITALGLA-EVRVIGLAKRLE-----EVRLPDQDFPLILPR 544 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMI 581 LY +QR+RDE+HRFAIT HR+RR +A S LD++ G+G +R++ +L FG+++ + Sbjct: 545 DSEGLYLLQRVRDESHRFAITHHRQRRSRAMVESVLDDVPGLGAVRRKTVLSHFGSLRKL 604 Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 ++ + +A + G+ A I + + Sbjct: 605 RAATVDQIAELPGLGAATAQAIVDALRADQPGQ 637 >gi|283785658|ref|YP_003365523.1| UvrABC system protein C [Citrobacter rodentium ICC168] gi|282949112|emb|CBG88719.1| UvrABC system protein C [Citrobacter rodentium ICC168] Length = 610 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 212/614 (34%), Positives = 335/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++ I+ I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVALIHQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLATHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M +A+ + +E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQQLAFEEAARIRDQIQAVRRVTEKQFVSNSG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 250 DDLDVIGVSFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G ++ I +G++ + ++ A NA + T K Sbjct: 310 MRTLPGEILLDFNLSDKTLLSDSLSELAGRRIHIQTKPRGDRARYLKLARTNAATALTTK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP I R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTIAQRLSALATVLNLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I+ + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L A+ V +L+V ++ ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LGQAKAVFAELDVSWDKSHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|207856539|ref|YP_002243190.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|226698793|sp|B5R110|UVRC_SALEP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|206708342|emb|CAR32645.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 610 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 212/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI +I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M +A+ +E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTEKQFVSNAG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G ++ + +G++ + ++ A NA + K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALITK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP I R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTITQRLTALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I+ + PDV+++DGGKGQ Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V ++R ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLEILFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|326330009|ref|ZP_08196323.1| excinuclease ABC subunit C [Nocardioidaceae bacterium Broad-1] gi|325952217|gb|EGD44243.1| excinuclease ABC subunit C [Nocardioidaceae bacterium Broad-1] Length = 666 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 189/632 (29%), Positives = 311/632 (49%), Gaps = 37/632 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +P PGVY+ D GRV+YVGKA NL++R+ +Y + R M++ ++ + Sbjct: 18 KAGSIPTQPGVYRFRDPKGRVIYVGKAINLRQRLANYFQPIPSLHPRTATMVTTAASVEW 77 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T ++EAL LE IK PRFN+ RDDKS+P++ +T + P + R + Sbjct: 78 TTVNNDIEALQLEYTWIKEFDPRFNVKYRDDKSYPWLAVTVSEEFPRVMVGRGAKRKGTR 137 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP+ A+ +T++ L R F +RSC++ VF+ RPCLL I +C+ PC G IS Sbjct: 138 YFGPYGHAWAIRETVDILLRVFPMRSCSNGVFKRSQQIGRPCLLGYIDKCTAPCVGNISP 197 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E++ E V + F++G ++I + M A+ D+E A RD LAA+ Sbjct: 198 EEHREIVDDFCDFMAGHTTTFTKRIEKEMYAASEALDFEKAARLRDDLAAMQRALEKQAV 257 Query: 238 IYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D +L + +Q + G+ +G + ++ A ++ +FL Q Y Sbjct: 258 VLGDGADADVIALAEDPLEVGVQIFYVRGGRIKGQRGWVADRMDDADTAGLVEHFLLQLY 317 Query: 295 TDKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 + P IL+ + LE KV+I VP++G+K+ + E NA ++ Sbjct: 318 AGEDAEAIPREILVPALPPDHETLEELLSDVRKAKVRIRVPQRGDKKTLQETVAKNAEQA 377 Query: 352 HTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 + S L++ + L +P RIE YD SH+ G V MVV + Sbjct: 378 LALHKTKRASDLTTRNRALEEIQEALELDEVPLRIECYDISHLQGTEIVASMVVFEDGLA 437 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEEN--------------LNFHP 453 K++YR+F + DD M V+ RRF +L+ + L Sbjct: 438 RKSEYRRFIIKGQ--DGSDDVRAMHEVITRRFKRLLDEQSTSIVSTDVEGANGPMLVDPE 495 Query: 454 KKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK 513 + F P +V++DGG Q++AAQ L +L +++ I ++ +AK + E + Sbjct: 496 TGRPRKFAYAPGLVVVDGGAPQVAAAQRALAELGIDD-IPVVGLAKRLE-----EVWVPD 549 Query: 514 KGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLL 572 + + ++L LY +QR+RDEAHRFAIT HR RR K+ S LD++ G+G +R++ L+ Sbjct: 550 EEDPVILPRSSEGLYLLQRVRDEAHRFAITHHRGRRSKSMVESLLDDVPGLGEVRRKTLM 609 Query: 573 QSFGTVKMISRSSPETLASIEGISKKIACKIY 604 + FG++K + ++ E +A + GI A I Sbjct: 610 KHFGSLKKLRAATAEEIALVPGIGPATATAIK 641 >gi|117920057|ref|YP_869249.1| excinuclease ABC subunit C [Shewanella sp. ANA-3] gi|189038095|sp|A0KVM4|UVRC_SHESA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|117612389|gb|ABK47843.1| Excinuclease ABC subunit C [Shewanella sp. ANA-3] Length = 609 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 200/611 (32%), Positives = 327/611 (53%), Gaps = 28/611 (4%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 GVY+M D+ G V+YVGKA +L+KR+ SY N + ++S I++I T+T +E Sbjct: 16 SSAGVYRMYDVKGDVIYVGKAKDLKKRLSSYFRKNLGNVKTQALVSHIHHIDVTLTHSET 75 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 +ALLLE + IK+ P++N+LLRDDKS+PYI ++ +H+ P L HR +G YFGP+ + Sbjct: 76 DALLLENDYIKQYMPKYNVLLRDDKSYPYIFLS-QHEHPRLAYHRGPQREKGYYFGPYPN 134 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 AV ++++ +Q+ F +R C D ++ RTRPCL +Q+ RCS PC G++S+ +Y E V A Sbjct: 135 GGAVRESLHLMQKLFPIRQCDDLYYKSRTRPCLQYQLSRCSAPCVGKVSNAEYDEQVKLA 194 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCF 245 FL G + + ++ M +A ++ YE A RD++ AL + + N MD Sbjct: 195 SLFLKGKDKQVISELVAKMEEAAGQQAYEQAARFRDQIMALRRVAEQQEVSGNTGDMDVI 254 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPE 301 +++ +AC F G+ G+ +++ +++ ++L FL QFY + + P+ Sbjct: 255 GVHYASGIACFHLLFIREGKIFGSRSYYPTVPAQTDIEEVLRSFLLQFYLNADIQRTIPK 314 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 +++S EE LE + + K I + ++ + AL NA + +LS + + Sbjct: 315 EVVISHHFEELHELEAAVSEALNKKFSIKTNVRADRASFLRLALTNATNAVMTRLSHKNT 374 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 + + L +R+E +D SH MG S V VV G K +YR++N+ Sbjct: 375 VEQRFVLLEEILELNAPIQRMECFDISHTMGESTVASCVVFNREGPHKAEYRRYNIEG-- 432 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 + DD A M+ + RRF ++ + PD++ +DGG GQL AQ Sbjct: 433 ITPGDDYAAMKQAISRRFDKI---------------DASGKIPDILFIDGGLGQLRIAQQ 477 Query: 482 VLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAH 538 ++ + +N++ +I +AKG R G+E E + L P L+ IQ +RDE+H Sbjct: 478 IVDEKFVNLDKAPQLIGVAKGESRKPGLETLIFGDTETSFSLEDDSPALHLIQHIRDESH 537 Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR RR+K S L+ I GIGP R++ LLQ G ++ + +S LA + GIS Sbjct: 538 RFAITGHRNRRQKTRNTSTLESIPGIGPKRRKALLQHLGGLQEVKGASVAELAKVPGISI 597 Query: 598 KIACKIYNHFH 608 ++A I++ Sbjct: 598 EMAQTIHDALR 608 >gi|322616940|gb|EFY13848.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618180|gb|EFY15072.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625850|gb|EFY22669.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626302|gb|EFY23112.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632717|gb|EFY29462.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639059|gb|EFY35752.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640500|gb|EFY37153.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645991|gb|EFY42508.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649888|gb|EFY46309.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655496|gb|EFY51804.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660274|gb|EFY56512.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662955|gb|EFY59162.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668140|gb|EFY64299.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674100|gb|EFY70194.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675547|gb|EFY71621.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683041|gb|EFY79057.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686735|gb|EFY82713.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195376|gb|EFZ80556.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199267|gb|EFZ84362.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204432|gb|EFZ89438.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207522|gb|EFZ92470.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211847|gb|EFZ96678.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217507|gb|EGA02226.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223585|gb|EGA07900.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231529|gb|EGA15642.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235972|gb|EGA20051.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240542|gb|EGA24585.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245434|gb|EGA29434.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250204|gb|EGA34096.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323255488|gb|EGA39249.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262085|gb|EGA45648.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266208|gb|EGA49698.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270683|gb|EGA54124.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 610 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 212/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI +I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEVLVAQIQHIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYT 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M +A+ +E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTERQFVSNAG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G ++ + +G++ + ++ A NA + K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALITK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP I R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTITQRLTALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I+ + PDV+++DGGKGQ Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V ++R ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|24373426|ref|NP_717469.1| excinuclease ABC subunit C [Shewanella oneidensis MR-1] gi|32130299|sp|Q8EFV4|UVRC_SHEON RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|24347704|gb|AAN54913.1|AE015629_7 excinuclease ABC, C subunit [Shewanella oneidensis MR-1] Length = 609 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 200/614 (32%), Positives = 329/614 (53%), Gaps = 28/614 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + GVY+M D+ G V+YVGKA +L+KR+ SY N + ++S I++I T+T Sbjct: 13 TVTSSAGVYRMYDVKGDVIYVGKAKDLKKRLSSYFRKNLGNVKTQALVSHIHHIDVTLTH 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E +ALLLE + IK+ P++N+LLRDDKS+PYIL++ +H+ P L HR +G YFGP Sbjct: 73 SETDALLLENDYIKQYMPKYNVLLRDDKSYPYILLS-QHEHPRLAYHRGPQREKGHYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + + AV ++++ +Q+ F +R C D ++ RTRPCL +Q+ RCS PC G++S+ +Y E V Sbjct: 132 YPNGGAVRESLHLMQKLFPIRQCDDLYYKSRTRPCLQYQLSRCSAPCVGKVSNAEYDEQV 191 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242 A FL G + + ++ M +A ++ YE A RD++ AL + + N M Sbjct: 192 KLASLFLKGKDKQVISELVAKMEEAAEQQAYEQAARFRDQIMALRRVAEQQEVSGNTGDM 251 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KP 298 D +++ +AC F G+ G+ +++ +++ ++L FL QFY + + Sbjct: 252 DVIGVHYASGIACFHLLFIREGKIFGSRSYYPTVPAQTDIEEVLRSFLLQFYLNADIQRT 311 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P+ +++S EE LE + + K I + ++ + A+ NA + +LS Sbjct: 312 IPKEVVISHHFEELHELEAAVSEALNKKFSIKTNVRADRASFLRLAITNATNAVMTRLSH 371 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + + + + L +R+E +D SH MG S V VV G K +YR++N+ Sbjct: 372 KNTVEQRFVLLEEILELNAPIQRMECFDISHTMGESTVASCVVFNREGPHKAEYRRYNIE 431 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + DD A M+ + RRF ++ + PD++ +DGG GQL Sbjct: 432 G--ITPGDDYAAMKQAISRRFDKI---------------DASGKIPDILFIDGGLGQLRI 474 Query: 479 AQGVLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRD 535 AQ ++ + +N++ +I +AKG R G+E E + L P L+ IQ +RD Sbjct: 475 AQQIVDEKFVNLDKAPQLIGVAKGESRKPGLETLIFGDTETSFSLEDDSPALHLIQHIRD 534 Query: 536 EAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E+HRFAIT HR RR+K S L+ I GIGP R++ LLQ G ++ + +S LA + G Sbjct: 535 ESHRFAITGHRNRRQKTRNTSTLESIPGIGPKRRKALLQHLGGLQEVKGASVAELAKVPG 594 Query: 595 ISKKIACKIYNHFH 608 IS ++A I++ Sbjct: 595 ISIEMAQTIHDALR 608 >gi|294994982|ref|ZP_06800673.1| excinuclease ABC subunit C [Mycobacterium tuberculosis 210] gi|326903041|gb|EGE49974.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis W-148] Length = 646 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 184/638 (28%), Positives = 306/638 (47%), Gaps = 34/638 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA +L+ R+ SY + R +++ + +TV Sbjct: 13 SIPVEPGVYRFRDQHGRVIYVGKAKSLRSRLTSYFADVASLAPRTRQLVTTAAKVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE IK PRFN+ RDDKS+P + +T + P L +R YFG Sbjct: 73 GTEVEALQLEYTWIKEFDPRFNVRYRDDKSYPVLAVTLGEEFPRLMVYRGPRRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F R+C+ VF+ RPCLL I +CS PC G + + ++ Sbjct: 133 PYSHAWAIRETLDLLTRVFPARTCSAGVFKRHRQIDRPCLLGYIDKCSAPCIGRVDAAQH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + V + FLSG + + MN A + D+E A RD L+AL + Sbjct: 193 RQIVADFCDFLSGKTDRFARALEQQMNAAAEQLDFERAARLRDDLSALKRAMEKQAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE--STNAQILSYFLRQFY- 294 D + ++ A +Q G+ RG + ++ E + Q++ FL QFY Sbjct: 253 DGTDADVVAFADDELEAAVQVFHVRGGRVRGQRGWIIEKPGEPGDSGIQLVEQFLTQFYG 312 Query: 295 -----------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQ 343 + P P +L+ L G +V + VP++G+KR + E Sbjct: 313 DQAALDDAADESANPVPREVLVPCLPSNAEELASWLSGLRGSRVVLRVPRRGDKRALAET 372 Query: 344 ALINAHRSHTQKLSTEISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCM 399 NA + Q S L+ L P RIE D SH+ G VG + Sbjct: 373 VHRNAEDALQQHKLKRASDFNARSAALQSIQDSLGLADAPLRIECVDVSHVQGTDVVGSL 432 Query: 400 VVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLN-FHPKKQE 457 V + K+ YR F + + + DD A + V RRF + ++++ + + P+++ Sbjct: 433 VAFEDGLPRKSDYRHFGIREAAGQGRSDDVACIAEVTRRRFLRHLRDQSDPDLLSPERKS 492 Query: 458 YSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA 517 F P++ ++DGG Q++AA V+ +L V + + +I +AK + E + + + Sbjct: 493 RRFAYPPNLYVVDGGAPQVNAASAVIDELGVTD-VAVIGLAKRLE-----EVWVPSEPDP 546 Query: 518 LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFG 576 +++ LY +QR+RDEAHRFAIT HR +R + S LD + G+G R++ L+ FG Sbjct: 547 IIMPRNSEGLYLLQRVRDEAHRFAITYHRSKRSTRMTASALDSVPGLGEHRRKALVTHFG 606 Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 ++ + ++ + + ++ GI A +++ ++S Sbjct: 607 SIARLKEATVDEITAVPGIGVATATAVHDALRPDSSGA 644 >gi|113969890|ref|YP_733683.1| excinuclease ABC subunit C [Shewanella sp. MR-4] gi|119367835|sp|Q0HJZ1|UVRC_SHESM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|113884574|gb|ABI38626.1| Excinuclease ABC subunit C [Shewanella sp. MR-4] Length = 609 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 200/611 (32%), Positives = 327/611 (53%), Gaps = 28/611 (4%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 GVY+M D+ G V+YVGKA +L+KR+ SY N + ++S I++I T+T +E Sbjct: 16 SSAGVYRMYDVKGDVIYVGKAKDLKKRLSSYFRKNLGNVKTQALVSHIHHIDVTLTHSET 75 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 +ALLLE + IK+ P++N+LLRDDKS+PYI ++ +H+ P L HR +G YFGP+ + Sbjct: 76 DALLLENDYIKQYMPKYNVLLRDDKSYPYIFLS-QHEHPRLAYHRGPQREKGYYFGPYPN 134 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 AV ++++ +Q+ F +R C D ++ RTRPCL +Q+ RCS PC G++S+ +Y E V A Sbjct: 135 GGAVRESLHLMQKLFPIRQCDDLYYKSRTRPCLQYQLSRCSAPCVGKVSNAEYDEQVKLA 194 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCF 245 FL G + + ++ M +A ++ YE A RD++ AL + + N MD Sbjct: 195 SLFLKGKDKQVISELVAKMEEAAEQQAYEQAARFRDQIMALRRVAEQQEVSGNTGDMDVI 254 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPE 301 +++ +AC F G+ G+ +++ +++ ++L FL QFY + + P+ Sbjct: 255 GVHYASGIACFHLLFIREGKIFGSRSYYPTVPAQTDIEEVLRSFLLQFYLNADIQRTIPK 314 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 +++S EE LE + + K I + ++ + AL NA + +LS + + Sbjct: 315 EVVISHHFEELHELEAAVSEALNKKFSIKTNVRADRASFLRLALTNATNAVMTRLSHKNT 374 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 + + L +R+E +D SH MG S V VV G K +YR++N+ Sbjct: 375 VEQRFVLLEEILELNAPIQRMECFDISHTMGESTVASCVVFNREGPHKAEYRRYNIEG-- 432 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 + DD A M+ + RRF ++ + PD++ +DGG GQL AQ Sbjct: 433 ITPGDDYAAMKQAISRRFDKI---------------DASGKIPDILFIDGGLGQLRIAQQ 477 Query: 482 VLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAH 538 ++ + +N++ +I +AKG R G+E E + L P L+ IQ +RDE+H Sbjct: 478 IVDEKFVNLDKAPQLIGVAKGESRKPGLETLIFGDTESSFSLEDDSPALHLIQHIRDESH 537 Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR RR+K S L+ I GIGP R++ LLQ G ++ + +S LA + GIS Sbjct: 538 RFAITGHRNRRQKTRNTSTLESIPGIGPKRRKALLQHLGGLQEVKGASVAELAKVPGISI 597 Query: 598 KIACKIYNHFH 608 ++A I++ Sbjct: 598 EMAQTIHDALR 608 >gi|300741444|ref|ZP_07071465.1| excinuclease ABC subunit C [Rothia dentocariosa M567] gi|300380629|gb|EFJ77191.1| excinuclease ABC subunit C [Rothia dentocariosa M567] Length = 657 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 200/652 (30%), Positives = 322/652 (49%), Gaps = 52/652 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA NL+ R+ SY + + M+ ++ +TV Sbjct: 13 DIPTHPGVYRFRDSHGRVIYVGKAKNLRNRLSSYFVAPERLSPKTYAMVHTAASVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E+E+L LE IK KPRFNI RDDKS+PY+ +T + K P R YFG Sbjct: 73 GSELESLQLEYTWIKEYKPRFNIAFRDDKSYPYLAVTMRDKFPRAQIMRGDRKKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180 P++ V A+ +T+++L R F +R+C+ VF+ RPCLL I +C+ PC G +S E++ Sbjct: 133 PYSQVWAIRETLDALLRVFPVRTCSAGVFKRAEASGRPCLLGYIDKCAAPCVGRVSPEEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E +F++GG ++ R M +A D+E A + RD + AL+ N + + Sbjct: 193 RELADGLCRFMAGGAEKFITQLTRRMKEAAADMDFERAAVLRDDITALTKAFERNAVVLS 252 Query: 241 RM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294 D F+ ++ A +Q F G+ RG + ++ ++ +++ L Q Y Sbjct: 253 DSVDADLFAFAQDELEASVQVFFVRGGRIRGQRGWIVEKVNDGGETELIEQLLVQVYGEM 312 Query: 295 ------------------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGE 336 T P IL+ E T L+ G KV I VP++G+ Sbjct: 313 AANIASAAAFDEDSGLDATQHEIPRQILVPTMPENTQQLQEWLSGVRGAKVDIAVPQRGD 372 Query: 337 KRKIIEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMG 392 K +++ NA S T S + L + + LP RIE YD SH+ G Sbjct: 373 KAALMKTVAENAQHSLTLHKSRRAGDITTRSASLVELQEVLELPDPLMRIECYDISHVQG 432 Query: 393 CSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFH 452 + V MVV + K+ YRKF++ + +DD A M V+ RRF + + ++ Sbjct: 433 TNVVASMVVFEDGMPTKSAYRKFSITGD--AARDDTASMYDVITRRFKRYLAEQQQRAEA 490 Query: 453 P-----------KKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGP 501 P ++ F P++V++DGG Q++AAQ L L +E+ I ++ IAK Sbjct: 491 PLSSGEVTADSSAQEPAKFAYPPNLVLVDGGPPQVAAAQSALSNLGIED-IYVVGIAKRL 549 Query: 502 KRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEI 560 + E + ++L LY +QR+RDEAHRFAIT HR +R KA S LD + Sbjct: 550 E-----ELWLPDDDFPVILPRTSEALYLVQRIRDEAHRFAITFHRAKRGKAMVASALDSV 604 Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 G+G +++ L++ FG+V + +S + L + G+ +A K+++H ++ + Sbjct: 605 PGLGSVKRAALIKHFGSVAKVRNASIKELQQVSGVGPALAQKVHDHLNQKET 656 >gi|215411066|ref|ZP_03419874.1| excinuclease ABC subunit C [Mycobacterium tuberculosis 94_M4241A] gi|298524925|ref|ZP_07012334.1| excinuclease ABC (subunit C-nuclease) uvrC [Mycobacterium tuberculosis 94_M4241A] gi|298494719|gb|EFI30013.1| excinuclease ABC (subunit C-nuclease) uvrC [Mycobacterium tuberculosis 94_M4241A] Length = 646 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 184/638 (28%), Positives = 306/638 (47%), Gaps = 34/638 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA +L+ R+ SY + R +++ + +TV Sbjct: 13 SIPVEPGVYRFRDQHGRVIYVGKAKSLRSRLTSYFADVASLAPRTRQLVTTAAKVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE IK PRFN+ RDDKS+P + +T + P L +R YFG Sbjct: 73 GTEVEALQLEYTWIKEFDPRFNVRYRDDKSYPVLAVTLGEEFPRLMVYRGPRRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F R+C+ VF+ RPCLL I +CS PC G + + ++ Sbjct: 133 PYSHAWAIRETLDLLTRVFPARTCSAGVFKRHRQIDRPCLLGYIDKCSAPCIGRVDAAQH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + V + FLSG + + MN A + D+E A RD L+AL + Sbjct: 193 RQIVADFCDFLSGKTDRFARALEQQMNAAAEQLDFERAARLRDDLSALKRAMEKQAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE--STNAQILSYFLRQFY- 294 D + ++ A +Q G+ RG + ++ E + Q++ FL QFY Sbjct: 253 DGTDADVVAFADDELEAAVQVFHVRGGRVRGQRGWIVEKPGEPGDSGIQLVEQFLTQFYG 312 Query: 295 -----------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQ 343 + P P +L+ L G +V + VP++G+KR + E Sbjct: 313 DQAALDDAADESANPVPREVLVPCLPSNAEELASWLSGLRGSRVVLRVPRRGDKRALAET 372 Query: 344 ALINAHRSHTQKLSTEISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCM 399 NA + Q S L+ L P RIE D SH+ G VG + Sbjct: 373 VHRNAEDALQQHKLKRASDFNARSAALQSIQDSLGLADAPLRIECVDVSHVQGTDVVGSL 432 Query: 400 VVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLN-FHPKKQE 457 V + K+ YR F + + + DD A + V RRF + ++++ + + P+++ Sbjct: 433 VAFEDGLPRKSDYRHFGIREAAGQGRSDDVACIAEVTRRRFLRHLRDQSDPDLLSPERKS 492 Query: 458 YSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA 517 F P++ ++DGG Q++AA V+ +L V + + +I +AK + E + + + Sbjct: 493 RRFAYPPNLYVVDGGAPQVNAASAVIDELGVTD-VAVIGLAKRLE-----EVWVPSEPDP 546 Query: 518 LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFG 576 +++ LY +QR+RDEAHRFAIT HR +R + S LD + G+G R++ L+ FG Sbjct: 547 IIMPRNSEGLYLLQRVRDEAHRFAITYHRSKRSTRMTASALDSVPGLGEHRRKALVTHFG 606 Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 ++ + ++ + + ++ GI A +++ ++S Sbjct: 607 SIARLKEATVDEITAVPGIGVATATAVHDALRPDSSGA 644 >gi|29832833|ref|NP_827467.1| excinuclease ABC subunit C [Streptomyces avermitilis MA-4680] gi|81716929|sp|Q829W8|UVRC_STRAW RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|29609954|dbj|BAC74002.1| putative excinuclease ABC subunit C [Streptomyces avermitilis MA-4680] Length = 681 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 189/629 (30%), Positives = 312/629 (49%), Gaps = 35/629 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 ++P+ PGVY+ D RV+YVGKA +L++R+ SY R M++ ++ + Sbjct: 10 KPGEIPDSPGVYKFRDEHHRVIYVGKAKSLRQRLASYFQDLAGLHPRTRTMVTTAASVEW 69 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TEVEAL LE + IK PRFN+ RDDKS+PY+ +T + P + R Sbjct: 70 TVVSTEVEALQLEYSWIKEYDPRFNVKYRDDKSYPYLAVTMNEEFPRVQVMRGHKRKGVR 129 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP+ A+ T++ L R F +R+C+ VF++ RPCLL I +CS PC +S+ Sbjct: 130 YFGPYGHAWAIRDTVDLLLRVFPVRTCSAGVFKNAARTGRPCLLGYIGKCSAPCVERVSA 189 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E++ E E F++G ++ R M A + +YE A RD + AL N Sbjct: 190 EEHRELAEEFCDFMAGRTGTYIRRLERQMTDAAEEMEYEKAARLRDDIGALKKAMEKNAV 249 Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D ++ ++ A +Q G+ RG + T A ++ + L+Q Y Sbjct: 250 VLADATDADLIAVAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEAVTTADLVEHALQQLY 309 Query: 295 TDK---PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 ++ P+ +L+ + ++ + G V + +P++G+K+ ++E NA +S Sbjct: 310 GEETGDSVPKEVLVPALPDPVEPVQEWLTGRRGSIVSLRIPQRGDKKSLMETVQRNAQQS 369 Query: 352 HTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 + S L++ + L P RIE YD SH+ G V MVV + Sbjct: 370 LALHKTKRASDLTTRSRALEEIAEALDLDSAPLRIECYDISHLQGDDVVASMVVFEDGLQ 429 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNF------------HPKK 455 K++YR+F + + QDD M V+ RRF + + +E + Sbjct: 430 RKSEYRRFQIKS--FEGQDDVRSMHEVITRRFRRYLSEKERTGEWADGDLKDGELKDDEG 487 Query: 456 QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG 515 + F P +V++DGG+ Q++AA+ L +L +++ I + +AK + E + G Sbjct: 488 RPKRFAYPPQLVVVDGGQPQVAAAKRALDELGIDD-IAVCGLAKRLE-----EVWLPDDG 541 Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQS 574 + +VL LY +QR+RDEAHRFAIT R +R K SPLD++ G+G RK+ L++ Sbjct: 542 DPVVLPRTSEGLYLLQRVRDEAHRFAITYQRTKRAKRFRASPLDDVAGLGETRKQALIKH 601 Query: 575 FGTVKMISRSSPETLASIEGISKKIACKI 603 FG+VK + ++ + + + GI +K A I Sbjct: 602 FGSVKKLRSATIDQICEVPGIGRKTAETI 630 >gi|311279138|ref|YP_003941369.1| excinuclease ABC, C subunit [Enterobacter cloacae SCF1] gi|308748333|gb|ADO48085.1| excinuclease ABC, C subunit [Enterobacter cloacae SCF1] Length = 610 Score = 530 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 209/618 (33%), Positives = 335/618 (54%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIAQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FL+G + + ++ M +A+ +E A RD++ A+ + Sbjct: 190 QQVEYVRLFLAGKDEQVVNQLVAKMEKASQALAFEEAARLRDQIQAVRRVTEKQFVSNAG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S G ++ + +G++ + ++ A NA + K Sbjct: 310 ARTLPGEILLDFNLGDKTLLAESLSALAGRRINVQTKPRGDRARYLKLARTNAATALVTK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + LK +P + R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTISQRLKALATILKMPDVK-RMECFDISHTMGEQTVASCVVFDSNGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I+ + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L A+ V +L+V ++ ++ +AKG R AG+E F+ +GE L P L+ IQ Sbjct: 472 LGQAKQVFAELDVSWDKHHPLLLGVAKGSDRKAGLETLFLEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI+ HRK+R K S L+ I G+GP R+++LL+ G ++ + ++S E +A Sbjct: 532 HIRDESHDHAISGHRKKRAKVKSTSTLETIEGVGPKRRQMLLKYMGGLQGLQKASVEEIA 591 Query: 591 SIEGISKKIACKIYNHFH 608 + GIS +A KI+ Sbjct: 592 KVPGISHGLAEKIFYSLK 609 >gi|168244792|ref|ZP_02669724.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194451638|ref|YP_002045997.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|229557860|sp|B4T842|UVRC_SALHS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|194409942|gb|ACF70161.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205336371|gb|EDZ23135.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 610 Score = 530 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 210/614 (34%), Positives = 334/614 (54%), Gaps = 31/614 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI +I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGAVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC + E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVGEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M +A+ +E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTEKQFVSNAG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G ++ + +G++ + ++ A NA + K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALITK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP I R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTITQRLTALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I+ + PDV+++DGGKGQ Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V ++ ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKAVFAELDVPWDKHHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591 Query: 591 SIEGISKKIACKIY 604 + GIS+ +A KI+ Sbjct: 592 KVPGISQGLAEKIF 605 >gi|221134466|ref|ZP_03560771.1| excinuclease ABC subunit C [Glaciecola sp. HTCC2999] Length = 609 Score = 530 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 209/612 (34%), Positives = 326/612 (53%), Gaps = 24/612 (3%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++ PGVY+M + V+YVGKA NL KR+ SY + + + ++ I + TV Sbjct: 14 DKLTHQPGVYRMYNANDDVIYVGKAKNLNKRVSSYFKAKHDNSKTQSLVGHIAKMDVTVV 73 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E EA +LE N IK+ +PR+NILL+DDKS+P+I I+ H+ P + HR +G YFG Sbjct: 74 SSETEAFILENNFIKKYRPRYNILLKDDKSYPFIFIS-DHQHPKISMHRGPQKQKGEYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYME 182 P+ S AV++++ S Q+ F +R C D+ +R RTRPCL +Q++RCS PC IS +Y E Sbjct: 133 PYPSAWAVKESLRSFQKIFPIRQCEDAYYRARTRPCLQYQMQRCSAPCVAGHISDVEYNE 192 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YN 240 V AK FL G + + + + + M +A+++ +E A RD++ AL +Q Sbjct: 193 QVLMAKLFLKGKDQQVIDTMVKQMEKASMELRFEHAARLRDQIGALRKVQEQQWVSGAQE 252 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--DKP 298 MD F + ACIQ F G+ G+ +FF K S L F+ QFY +K Sbjct: 253 EMDVFGFAYKHGGACIQVMFVRDGKLLGSKSFFPKIPSVLGIDDALQSFILQFYLAGNKT 312 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P+ I+L ++ E + + + YKVK + KR+ +E A NA + + Sbjct: 313 IPKQIILPQKLPEQEEVAEALSQHAKYKVKFYSGARDSKRRYLELANKNAENGLVSQQTQ 372 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + S KD +R+E +D SH G V VV +G +K+ YR++N+ Sbjct: 373 QKSMFARYKDLESVIDRDEPIQRMECFDISHTSGQQTVASCVVFNRDGPLKSDYRRYNI- 431 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + + DD A M VL RR+ ++E+ + PD+V +DGGKGQL Sbjct: 432 -DGITGGDDYAAMAQVLARRYKYTQQDEDKI--------------PDIVFIDGGKGQLGQ 476 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEA 537 A+ +K E + +I +AKG R AG+E + E + +N P L+ IQ +RDE+ Sbjct: 477 AEAHFEKWPFEKKPLLIGVAKGTSRKAGLETLIMAGSHETIPMNADQPGLHLIQHIRDES 536 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAI HR RR+K S ++ I G+G R++ LL+ G ++ + ++S E + + GIS Sbjct: 537 HRFAIAGHRNRRQKIKTTSTIESIPGVGAKRRQALLKYMGGLQGLKKASQEEIQKVPGIS 596 Query: 597 KKIACKIYNHFH 608 ++A IY+H H Sbjct: 597 VQMAEIIYDHLH 608 >gi|117928317|ref|YP_872868.1| excinuclease ABC subunit C [Acidothermus cellulolyticus 11B] gi|189038014|sp|A0LTX2|UVRC_ACIC1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|117648780|gb|ABK52882.1| Excinuclease ABC subunit C [Acidothermus cellulolyticus 11B] Length = 641 Score = 530 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 192/637 (30%), Positives = 304/637 (47%), Gaps = 39/637 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRF 60 ++ ++PE PGVY+ D RV+YVGKA NL+ R+ SY R M++ + + Sbjct: 10 AAGEIPESPGVYRFWDAHDRVIYVGKAKNLRARLTSYFADPALLHPRTRAMVTAAARLDW 69 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 + TEVEAL LE N IK+ +PRFNI RDDKS+PY+ +T +P L +R Sbjct: 70 VIVRTEVEALQLEYNWIKQYEPRFNIKYRDDKSYPYLAVTLAEPVPRLMVYRGKRKKGNR 129 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGPFA A+ T++ L R F R+C+ V+R RPCLL I +CS PC G +S Sbjct: 130 YFGPFAHAWAIRDTLDLLLRVFPARTCSAGVYRRAQRIGRPCLLGYIGKCSAPCVGWVSE 189 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E++ + V + + G ++ ++M A ED+E A RD AAL Sbjct: 190 EQHRQIVLDFCDVMGGRATEYLRRLEKDMRAAAAAEDFERAARLRDDAAALRLAIEKQTV 249 Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D +L + A + F G+ RG + ++ A ++ +FL Q Y Sbjct: 250 VLPENTDADVIALADDDLEAAVHVFFVRDGRVRGQRGWVVEKVEALDTADLVQHFLAQLY 309 Query: 295 -----TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH 349 P IL+ +T LE + G +V I VP++G+K+ ++E NA Sbjct: 310 GETGAESADVPREILVPVAPSDTETLERWLSSRRGGRVTIRVPQRGDKKALLETVAQNAA 369 Query: 350 RSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405 ++ + L++ + LP P RIE YD S + G V MVV + Sbjct: 370 QALHLHKVRRAGDLTARGRALREIQEALNLPDAPLRIECYDVSTLQGTDVVASMVVFEDG 429 Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNE-------------ENLNFH 452 K++YR+F L D + V+ RRF + + + Sbjct: 430 LPRKSEYRRFALRG---VGGGDVGAIHEVISRRFRRYLDERMQTDSPIDDGTGPDQPRVD 486 Query: 453 PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV 512 F P +VI+DGG Q++AA+ L +L +++ + + +AK + E + Sbjct: 487 AAAHHRKFSYPPSLVIVDGGAPQVAAAKKALDELGIDD-VALAGLAKRLE-----EIWLP 540 Query: 513 KKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLL 571 + E ++L LY +QRLRDEAHRFAI+ HR +R S L+ I GIG R++ Sbjct: 541 DREEPVILPRASEGLYLLQRLRDEAHRFAISYHRAKRSTSMTRSVLEGIPGIGETRRKAF 600 Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 L+ FG+V+ + +++ LA++ G+ ++ A ++ H Sbjct: 601 LRHFGSVQRMRQATVAELAAVPGVGRRTAEVVFAALH 637 >gi|311113534|ref|YP_003984756.1| excision endonuclease subunit UvrC [Rothia dentocariosa ATCC 17931] gi|310945028|gb|ADP41322.1| excision endonuclease subunit UvrC [Rothia dentocariosa ATCC 17931] Length = 657 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 199/652 (30%), Positives = 322/652 (49%), Gaps = 52/652 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA NL+ R+ SY + + M+ ++ +TV Sbjct: 13 DIPTHPGVYRFRDSHGRVIYVGKAKNLRNRLSSYFVAPERLSPKTYAMVHTAASVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E+E+L LE IK KPRFNI RDDKS+PY+ +T + K P R YFG Sbjct: 73 GSELESLQLEYTWIKEYKPRFNIAFRDDKSYPYLAVTMRDKFPRAQVMRGDRKKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180 P++ V A+ +T+++L R F +R+C+ VF+ RPCLL I +C+ PC G +S E++ Sbjct: 133 PYSQVWAIRETLDALLRVFPVRTCSAGVFKRAEASGRPCLLGYIDKCAAPCVGRVSPEEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E +F++GG ++ R M +A D+E A + RD + AL+ N + + Sbjct: 193 RELADGLCRFMAGGAEKFITQLTRRMKEAAADMDFERAAVLRDDITALTKAFERNAVVLS 252 Query: 241 RM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294 D F+ ++ A +Q F G+ RG + ++ ++ +++ L Q Y Sbjct: 253 DSVDADLFAFAQDELEASVQVFFVRGGRIRGQRGWIVEKVNDGGETELIEQLLVQVYGEM 312 Query: 295 ------------------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGE 336 T P IL+ E T L+ G KV I VP++G+ Sbjct: 313 AANIASAAAFDEDSGLDATQHEIPRQILVPTMPENTQQLQEWLSGMRGAKVDIAVPQRGD 372 Query: 337 KRKIIEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMG 392 K +++ NA S T S + L + + LP RIE YD SH+ G Sbjct: 373 KAALMKTVAENAQHSLTLHKSRRAGDITTRSASLVELQEALELPDPLMRIECYDISHVQG 432 Query: 393 CSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFH 452 + V MVV + K+ YRKF++ + +DD A M V+ RRF + + ++ Sbjct: 433 TNVVASMVVFEDGMPTKSAYRKFSITGD--AARDDTASMYDVITRRFKRYLTEQQQRAET 490 Query: 453 PK-----------KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGP 501 P ++ F P++V++DGG Q++AAQ L L +E+ I ++ IAK Sbjct: 491 PLSSGEVTADESVQEPAKFAYPPNLVLVDGGPPQVAAAQSALSDLGIED-IYVVGIAKRL 549 Query: 502 KRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEI 560 + E + ++L LY +QR+RDEAHRFAI+ HR +R KA S LD + Sbjct: 550 E-----ELWLPDDDFPVILPRTSEALYLVQRIRDEAHRFAISFHRAKRGKAMVASALDSV 604 Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 G+G +++ L++ FG+V + +S + L + G+ +A K+++H ++ + Sbjct: 605 PGLGSVKRAALIKHFGSVAKVRNASIKELQQVSGVGPALAQKVHDHLNQKET 656 >gi|15827213|ref|NP_301476.1| excinuclease ABC subunit C [Mycobacterium leprae TN] gi|221229691|ref|YP_002503107.1| excinuclease ABC subunit C [Mycobacterium leprae Br4923] gi|21264123|sp|Q9CCP1|UVRC_MYCLE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|254764939|sp|B8ZUN5|UVRC_MYCLB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|13092761|emb|CAC30070.1| putative excinuclease ABC subunit C [Mycobacterium leprae] gi|219932798|emb|CAR70655.1| putative excinuclease ABC subunit C [Mycobacterium leprae Br4923] Length = 647 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 183/639 (28%), Positives = 295/639 (46%), Gaps = 35/639 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA +L+ R+ SY N R M++ + +TV Sbjct: 13 SIPVEPGVYRFRDPYGRVIYVGKAKSLRSRLASYFADVANLHPRTRQMVTIAAKVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE N IK PRFNI RDDKS+P + +T + P L +R YFG Sbjct: 73 NTEVEALQLEYNWIKEFDPRFNIRYRDDKSYPVLAVTLGEEFPRLMVYRGPRRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRT---RPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F R+C+ VF+ RPCLL I +C+ PC G + +E++ Sbjct: 133 PYSHAWAIRETLDLLTRVFPARTCSPGVFKRHKQIDRPCLLGYIDKCAAPCVGRVGAEQH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + V + FLSG + R M+ A + D+E A RD L AL ++ Sbjct: 193 SQIVADFCDFLSGKTDRYARDLERKMSAAAEQLDFERAARLRDDLFALKRAMEKQAVVFG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNA-------------- 283 D + +++ +Q G+ RG + ++ + + Sbjct: 253 DGTDADVVAFAYDELEVAVQVFHVRGGRVRGQRGWIVEKSDDPGDTGEEQLVEQFLAQFY 312 Query: 284 -QILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIE 342 + + P P +L+ L G +V + VP++G+KR + E Sbjct: 313 GEQAELDFVADESANPVPREVLVPCLPSNADELASWLSGLRGSRVALRVPRRGDKRALAE 372 Query: 343 QALINAHRSHTQKLSTEISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGC 398 NA Q S L++ L + P RIE D SH+ G VG Sbjct: 373 TVQRNAKEELQQHKLKRASDFNSRSAALQNIQDTLGLSYAPLRIECVDISHVQGTDVVGS 432 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRF-SQLIKNEENLNFHPKKQ 456 +VV + K+ YR F + + DD A + V RRF L + P+ + Sbjct: 433 LVVFEDGLPRKSDYRHFGIRKAAGNGRSDDVASIAEVTRRRFLQHLHDQNDTNLLSPEGK 492 Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE 516 + F P++ ++DGG Q++AA VL++L + + + +I +AK + E + + Sbjct: 493 SHRFAYPPNLYVVDGGAPQVNAASTVLEELGIID-VAVIGLAKRLE-----EVWVPFEPY 546 Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSF 575 +++ L+ +QR+RDEAHRFAIT HR +R K S LD + G+G R++ L+ F Sbjct: 547 PVIMPRNSEALFLLQRVRDEAHRFAITYHRSKRSKRMTASALDSVPGLGAHRRKALVTHF 606 Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 G++ + ++ E + ++ GI A + ++S Sbjct: 607 GSIARLKDATVEQITAVPGIGVATATAVLEALRPDSSEA 645 >gi|296269970|ref|YP_003652602.1| excinuclease ABC subunit C [Thermobispora bispora DSM 43833] gi|296092757|gb|ADG88709.1| excinuclease ABC, C subunit [Thermobispora bispora DSM 43833] Length = 644 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 189/642 (29%), Positives = 315/642 (49%), Gaps = 44/642 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +PE PGVY+ D G+V+YVGKA NL++R+ SY R M++ ++ +TV Sbjct: 13 SIPESPGVYRFRDAGGQVIYVGKAKNLRQRLNSYFTDFAGLHPRTQTMLTTAASVDWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 EVEAL LE + IK PRFN+ RDDKS+PY+ +T + P + R + YFG Sbjct: 73 SNEVEALQLEYSWIKEYDPRFNVKYRDDKSYPYLAVTMGEEYPRVQVLRGAKRKGTRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F +R+C+ VF+ RPCLL I +CS PC G +++E++ Sbjct: 133 PYSHAWAIRETVDLLLRVFPVRTCSAGVFKRAAQMGRPCLLGYIDKCSAPCVGRVTAEEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + + F++G +++ R M +A E++E A RD + AL + Sbjct: 193 RKIAEDFCSFMAGDTGRFIKRLEREMREAAEAEEFERAARLRDDIRALQRALEKQAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D ++ + A +Q + G+ RG + + +++ +++ FL Q Y D Sbjct: 253 EATDCDVIAIAEDALEAAVQVFYVRGGRIRGQRGWVVDKVDDASTGELVERFLLQMYGDA 312 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P IL+ E +++ L ++ G +V++ VP++G+K+ ++E NA S Q Sbjct: 313 AVPREILVPVEPPDSAALAEVLSERRGGRVELRVPRRGDKKALLETVERNAKESLAQHKM 372 Query: 358 TEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 S L++ L P RIE +D SH G VG MVV + K++YR Sbjct: 373 RRASDLTTRSRALQEIADALGLEQAPLRIECFDVSHTQGSDVVGSMVVFEDGLARKSEYR 432 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNE----------------------ENLNF 451 +F + D A + V+ RRF + ++ Sbjct: 433 RFAVR----NPDGDAASIHEVVRRRFKRYLEERVATGDLAPALEGAEGDEERPGAGTPID 488 Query: 452 HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF 511 + F P++V++DGG Q +AAQ L +L +++ + + +AK + E + Sbjct: 489 PDTGRPRKFAYPPNLVVVDGGPAQAAAAQRALDELGIDD-VAVCGLAKRLE-----EVWL 542 Query: 512 VKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRL 570 + ++L LY +QR+RDEAHRFAIT HR +R KA S LD I G+GP R++ Sbjct: 543 PGEDHPVILPRGSEGLYLLQRIRDEAHRFAITYHRSKRSKALKESALDGIPGLGPARRQA 602 Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 LL+ FG++K + ++ E + ++ GI A I + + + Sbjct: 603 LLRHFGSLKRLRDATEEEIRAVPGIGPATAEAIVSALRGDKA 644 >gi|81639681|sp|Q66BN5|UVRC_YERPS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|51589353|emb|CAH20975.1| excinuclease ABC subunit C [Yersinia pseudotuberculosis IP 32953] Length = 610 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 215/618 (34%), Positives = 336/618 (54%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D AG V+YVGKA +L+KR+ SY + + ++ I I TV Sbjct: 11 LKTVTSQPGVYRMYDTAGTVIYVGKAKDLKKRLTSYFRAQVANRKTETLVKNIAQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPLIFLSADE-HPRLAVHRGAKHEKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RCSGPC +S E+Y Sbjct: 130 GPFPNSYAVRETLALLQKLFPVRQCENSVYRNRSRPCLQYQIGRCSGPCVEGLVSEEEYQ 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 V + FLSG + + ++ M +A+ + +E A RD++ A+ + + Sbjct: 190 RQVDYVRLFLSGKDQQVLTQLITRMEEASQQLHFEDAARIRDQIQAVRRVTEQQFVSGDS 249 Query: 242 M--DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295 D + + LAC+ F G+ G+ ++F K + + ++++ F+ QFY Sbjct: 250 EDLDVIGVAFDAGLACVHVLFIRLGKVLGSRSYFPKVPAGTELSEVVQTFVGQFYLQGSQ 309 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL E LL S + G K++I +G++ + ++ A NA + + Sbjct: 310 GRTLPGEILLDFTLTEKDLLASSLSELAGRKIQIQSRPRGDRARYLKLARTNASTALITR 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + +K+ K L R+E +D SH MG V VV NG V+++YR++ Sbjct: 370 LSQQSTIHQRMKELAKVLKLD-EINRMECFDISHTMGEQTVASCVVFDANGPVRSEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + + DD A M VL+RR+ + + +++ PDV+ +DGGKGQ Sbjct: 429 NI--SGITPGDDYAAMAQVLKRRYGKALDDQK---------------IPDVIFIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 LS A V LNV + + ++ +AKG R AG+E F+ +GE L P L+ IQ Sbjct: 472 LSQAFDVFASLNVPWDKQKPLLVGVAKGSDRKAGLETLFLASEGEGFSLPPDSPALHLIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RD++H AIT HR+RR K S L+ I G+GP R++ LL+ G ++ + +S E +A Sbjct: 532 HIRDDSHNHAITGHRQRRSKVKNTSALEMIEGVGPKRRQALLKYMGGLQPLFNASVEEIA 591 Query: 591 SIEGISKKIACKIYNHFH 608 + GIS+ +A KI+N Sbjct: 592 KVPGISQALAEKIHNALK 609 >gi|152980018|ref|YP_001353066.1| excinuclease ABC subunit C [Janthinobacterium sp. Marseille] gi|229558035|sp|A6SXR9|UVRC_JANMA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|151280095|gb|ABR88505.1| excinuclease ABC subunit C [Janthinobacterium sp. Marseille] Length = 618 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 216/619 (34%), Positives = 323/619 (52%), Gaps = 34/619 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P PGVY+ D +LYVGKA +L+KR+ SY N + R M+ +I + TVT Sbjct: 19 KLPNLPGVYRYFDAEDNLLYVGKARDLKKRVSSYFLKNLASPRTALMVERIARLETTVTR 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L+PR+NIL RDDKS+PY+ IT + P + +R + + YFGP Sbjct: 79 SEAEALLLENNLIKTLQPRYNILFRDDKSYPYLKITGQE-YPRMAYYRGAVDKKNQYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV++++ LQ+ F LR+C DSVF +RTRPCLL QI RCSGPC IS E Y V Sbjct: 138 FPSGWAVKESMQILQKVFLLRTCEDSVFANRTRPCLLHQIHRCSGPCVNFISKEDYALDV 197 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 A KFL G + E + M + +E A + R+++ ALS + + Sbjct: 198 ENAAKFLRGRQSEVLETLQGKMLAYAEELKFEQAALVRNQINALSRVLHQQSMETGGDAD 257 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT-------DSESTNAQILSYFLRQFY 294 +D ++ AC+ G++ G +F ES +++ FL Q Y Sbjct: 258 IDIIAVIVQGGRACVNLAMVRGGRHLGDRAYFPTHVDNALASAEESIATEVMKAFLAQHY 317 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 +K P ++L+ E +E L+ +Q G+++ + QG++R+ +E A A S + Sbjct: 318 IEKFIPGTLILNTEMDEPELMLALM-EQCGHRINVVFQPQGQRRQWLEMAHKGAEISLAR 376 Query: 355 KLSTEISHQMILKDFTKKFALPHIP---KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 LS + S Q + + R+E +D SH G + VV + + Sbjct: 377 LLSEQGSQQARTRMLVDALGIDVPDLESFRVECFDISHTQGEATQASCVVFHHHAMQNGE 436 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YR++N++ + DD A MR VL RR+ ++ + PDVV++DG Sbjct: 437 YRRYNIND--ITPGDDYAAMRQVLLRRYEKVANGD--------------GVMPDVVLIDG 480 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFI 530 GKGQ+ A+ V +L ++ + I+ +AKG R G+E G L L I Sbjct: 481 GKGQVEMARQVFVELGLDISL-IVGVAKGEGRKVGLETLVFVDGRPPQELGKESGALMLI 539 Query: 531 QRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 ++RDEAHRFAIT R +R KA S L+EI GIG R++ LL FG ++ + +S E L Sbjct: 540 AQIRDEAHRFAITGMRAKRAKARQTSRLEEIEGIGAKRRQKLLARFGGLRGVVDASIEDL 599 Query: 590 ASIEGISKKIACKIYNHFH 608 AS+EGIS+++A IY H Sbjct: 600 ASVEGISRQLAEDIYKQLH 618 >gi|126726024|ref|ZP_01741866.1| excinuclease ABC subunit C [Rhodobacterales bacterium HTCC2150] gi|126705228|gb|EBA04319.1| excinuclease ABC subunit C [Rhodobacterales bacterium HTCC2150] Length = 641 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 263/609 (43%), Positives = 377/609 (61%), Gaps = 14/609 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY+MLD RVLYVGKA NL+KR+ +Y + N HT RI+ MIS+ ++ F T Sbjct: 41 SLDNSPGVYRMLDEESRVLYVGKARNLKKRVSNYANPNGHTGRISRMISETASMMFLTTT 100 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLE N+IK+LKP++N+LLRDDKSFP IL+ +H PA+ KHR + +GSY+GP Sbjct: 101 TETEALLLEQNLIKQLKPKYNVLLRDDKSFPNILVGKEHGFPAIKKHRGAKKEKGSYYGP 160 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 FAS AV T+N LQ+ F LR+C D+ F RTRPCL +QIKRC+ PC G IS Y V Sbjct: 161 FASAMAVNNTLNHLQKVFLLRNCTDASFEARTRPCLQYQIKRCAAPCVGYISDADYGSLV 220 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 +A+ FL+G + ++E +A +M A+ ++E A RDR+ AL+ +Q Sbjct: 221 KDAENFLAGKSTKIQENLAADMQAASEAMEFERAAALRDRIKALTQVQQSQGINPKGVAD 280 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D +L+ AC+Q F QN G ++ + ++++ A+++ F QFY +K P Sbjct: 281 ADVIALFMQGGQACVQVFFIRANQNWGNHDYYPRVPADASPAEVMQAFATQFYDNKEPPR 340 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 +LLS++ E++ LL + ++ G KV+I VP++GEK +I AL N+ S +K+S + Sbjct: 341 MVLLSDDIEDSDLLVQALSEKAGRKVEILVPQRGEKADLIANALRNSRESLARKMSETAT 400 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 +LK + + P R+E+YDNSHI G +AVG M+V G GF QYRKFN+ +D Sbjct: 401 QARLLKGLAEALDMDAPPNRVEVYDNSHIQGTNAVGAMIVAGPEGFATGQYRKFNIKGDD 460 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 + DD MM+ VL RRF +LIK + E + +WPD++I+DGG GQ+SA Sbjct: 461 LTPGDDFGMMKEVLTRRFKRLIKED---------PERTSGNWPDLLIIDGGMGQVSAVAE 511 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 ++ + V + I ++ +AKG R AG E+F L DP+LYF+QR+RDEAHRFA Sbjct: 512 IMTEWGVTD-IPMVGVAKGVDRDAGKEEFHRTGKRPFALRHNDPVLYFVQRMRDEAHRFA 570 Query: 542 ITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 I THR +R K+ +PLDE+ GIG RKR LL +G+ K +SR+ L ++EGIS +A Sbjct: 571 IGTHRAKRAKSQFKNPLDEVPGIGAARKRALLAHYGSAKAVSRAGLSDLKAVEGISDSMA 630 Query: 601 CKIYNHFHK 609 IY+ FH+ Sbjct: 631 QSIYDFFHE 639 >gi|283795859|ref|ZP_06345012.1| excinuclease ABC subunit C [Clostridium sp. M62/1] gi|291076490|gb|EFE13854.1| excinuclease ABC subunit C [Clostridium sp. M62/1] Length = 621 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 202/620 (32%), Positives = 324/620 (52%), Gaps = 21/620 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M D ++YVGKA +L+ R++ Y S+ N T +I M+S+I + Sbjct: 7 ELKKLPAQPGVYIMHDDKDEIIYVGKAISLKNRVRQYFQSSRNKTAKIEKMVSRIARFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE N+IK +P++N +L+DDK++PYI +T P + R + Sbjct: 67 ILTDSELEALVLECNLIKEHRPKYNTMLKDDKTYPYIKVTVSEAFPRILFSRTMKKDKNK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGPF S AV+ I+ L + + +R+C+ ++ R + RPCL + I++C GPC G IS E Sbjct: 127 YFGPFTSSGAVKDMIDLLHKIYRIRTCSRNLPRDIGKDRPCLYYHIRQCDGPCQGFISQE 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y + + E FLSG + + + M A+ + ++E A +RD L ++ I Sbjct: 187 DYQKQIKEVLDFLSGKYDPVTKLLTDRMYAASEEMEFEKAAEYRDLLKSVRQIAQKQKIT 246 Query: 239 ---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D ++ ++ +Q F G+ G F ++ + TN+QIL+ F++QFY Sbjct: 247 SQSMDDRDIIAMAKDERDVVVQVFFVRDGRLIGREHFHVEAGTAETNSQILNGFVKQFYA 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350 P P I EE E+ ++ + G KVKI VPK+GEK K++E A NA + Sbjct: 307 GTPFIPHEIWCQEELEDAEVISSFLSGRRGQKVKILVPKKGEKEKLVELAKKNAKMVLDQ 366 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E+ + L + RIE YD S+I G +VG M+V + +N Sbjct: 367 DKEKIKREELRTTGAMNQIGGLIGLSRVR-RIEAYDISNISGFESVGSMIVYEDGRPKRN 425 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVIL 469 YRKF + V+ +D A MR VL RRFS + EE L SF +PD++++ Sbjct: 426 DYRKFRIKT--VQGPNDYASMREVLTRRFSHGLAEREEILEGGGDLSMGSFTRFPDLIMM 483 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGG+GQ++ A VL++L + I + + K E + ++ Sbjct: 484 DGGRGQVNIALEVLEELGIA--IPVCGMVKDDSHRTRG---LYYNNEEVPIDRYSEGFKL 538 Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 I R++DEAHRFAI HR R K S LD+I GIGP R++ L++ F T++ + + E Sbjct: 539 ITRIQDEAHRFAIEYHRSLRGKTQVRSVLDDIRGIGPARRKALMRYFKTIEAVREAGVEE 598 Query: 589 LASIEGISKKIACKIYNHFH 608 L + +++ A +Y+ FH Sbjct: 599 LLEVPQMNQAAAEAVYSFFH 618 >gi|15838902|ref|NP_299590.1| excinuclease ABC subunit C [Xylella fastidiosa 9a5c] gi|9107478|gb|AAF85110.1|AE004042_9 excinuclease ABC subunit C [Xylella fastidiosa 9a5c] Length = 627 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 225/603 (37%), Positives = 336/603 (55%), Gaps = 19/603 (3%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY M +LYVGKA L+KR+ SY + R+T M++Q+ + T+T E E Sbjct: 27 APGVYCMYAADDTLLYVGKAGALRKRVASYFNGTPKNTRLTAMLAQVVRMDVTITRNEAE 86 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE +IK L PR+N+LLRDDKS+PY+L+T + P + HR + G YFGP+ V Sbjct: 87 ALLLENQLIKSLAPRYNVLLRDDKSYPYVLLT-REAWPRIALHRGPQIVPGRYFGPYPGV 145 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 AV +N + + F LRSC DSVFR+R+RPCL +QI RCS PC ++ + Y E V Sbjct: 146 TAVRDMLNLIHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSAPCVNVVTHDNYTEAVRRVT 205 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCFS 246 FL G + L E++ + M A+ ++E A RD L +L +QN +D + Sbjct: 206 LFLEGKSDLLAEELIQAMQVASEHLEFEQAARLRDLLTSLRSMQNRQYVDGRAADLDVLA 265 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLS 306 AC+ F G+N GT FF KT+ E A+ILS F+ Q+Y + P P ILL Sbjct: 266 CAALSGHACVLLLSFRDGRNLGTRMFFPKTNGEERTAEILSAFVSQYYAEYPPPPEILLD 325 Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366 +E + +LLE +F + +K+ + +GE+ +E A+ NA + + +L+++ + ++ Sbjct: 326 QEIPDHTLLEAAFSRSSAHKISLRWNVRGERAGYVELAVRNAQVALSTELTSQRAQRVRS 385 Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426 + + L KR+E +D SH MG + V VV G V++QYR++N+ + D Sbjct: 386 EAVRQLLGLEEPIKRVECFDISHTMGEATVASCVVFDAVGPVRSQYRRYNI--TGITPGD 443 Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486 D A MR +ERRF + ++ ++ PDV+ +DGG GQL+ A+ L + Sbjct: 444 DYAAMRQAIERRFRRAVEEDKQ------------GERPDVLFIDGGAGQLAQAKMALNAV 491 Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546 VE + ++ ++KG +R AG E + G+ L P L FIQ++RDEAHRFAIT HR Sbjct: 492 GVE-SVLLVGVSKGEERRAGHETLIMLDGQELHPGAASPALQFIQQVRDEAHRFAITGHR 550 Query: 547 KRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 RR+K S L++I GIG R+ LL+ FG + + + +A +EGIS +A KIY Sbjct: 551 ARRQKTRMTSKLEDIPGIGSRRRANLLKHFGGLAGVKAAGQTEIARVEGISTALAAKIYA 610 Query: 606 HFH 608 H Sbjct: 611 SLH 613 >gi|32130309|sp|Q9PB34|UVRC_XYLFA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C Length = 621 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 225/603 (37%), Positives = 336/603 (55%), Gaps = 19/603 (3%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY M +LYVGKA L+KR+ SY + R+T M++Q+ + T+T E E Sbjct: 21 APGVYCMYAADDTLLYVGKAGALRKRVASYFNGTPKNTRLTAMLAQVVRMDVTITRNEAE 80 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE +IK L PR+N+LLRDDKS+PY+L+T + P + HR + G YFGP+ V Sbjct: 81 ALLLENQLIKSLAPRYNVLLRDDKSYPYVLLT-REAWPRIALHRGPQIVPGRYFGPYPGV 139 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 AV +N + + F LRSC DSVFR+R+RPCL +QI RCS PC ++ + Y E V Sbjct: 140 TAVRDMLNLIHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSAPCVNVVTHDNYTEAVRRVT 199 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCFS 246 FL G + L E++ + M A+ ++E A RD L +L +QN +D + Sbjct: 200 LFLEGKSDLLAEELIQAMQVASEHLEFEQAARLRDLLTSLRSMQNRQYVDGRAADLDVLA 259 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLS 306 AC+ F G+N GT FF KT+ E A+ILS F+ Q+Y + P P ILL Sbjct: 260 CAALSGHACVLLLSFRDGRNLGTRMFFPKTNGEERTAEILSAFVSQYYAEYPPPPEILLD 319 Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366 +E + +LLE +F + +K+ + +GE+ +E A+ NA + + +L+++ + ++ Sbjct: 320 QEIPDHTLLEAAFSRSSAHKISLRWNVRGERAGYVELAVRNAQVALSTELTSQRAQRVRS 379 Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426 + + L KR+E +D SH MG + V VV G V++QYR++N+ + D Sbjct: 380 EAVRQLLGLEEPIKRVECFDISHTMGEATVASCVVFDAVGPVRSQYRRYNI--TGITPGD 437 Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486 D A MR +ERRF + ++ ++ PDV+ +DGG GQL+ A+ L + Sbjct: 438 DYAAMRQAIERRFRRAVEEDKQ------------GERPDVLFIDGGAGQLAQAKMALNAV 485 Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546 VE + ++ ++KG +R AG E + G+ L P L FIQ++RDEAHRFAIT HR Sbjct: 486 GVE-SVLLVGVSKGEERRAGHETLIMLDGQELHPGAASPALQFIQQVRDEAHRFAITGHR 544 Query: 547 KRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 RR+K S L++I GIG R+ LL+ FG + + + +A +EGIS +A KIY Sbjct: 545 ARRQKTRMTSKLEDIPGIGSRRRANLLKHFGGLAGVKAAGQTEIARVEGISTALAAKIYA 604 Query: 606 HFH 608 H Sbjct: 605 SLH 607 >gi|114047120|ref|YP_737670.1| excinuclease ABC subunit C [Shewanella sp. MR-7] gi|119367836|sp|Q0HW92|UVRC_SHESR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|113888562|gb|ABI42613.1| Excinuclease ABC subunit C [Shewanella sp. MR-7] Length = 609 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 200/611 (32%), Positives = 327/611 (53%), Gaps = 28/611 (4%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 GVY+M D+ G V+YVGKA +L+KR+ SY N + ++S I++I T+T +E Sbjct: 16 SSAGVYRMYDVKGDVIYVGKAKDLKKRLSSYFRKNLGNVKTQALVSHIHHIDVTLTHSET 75 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 +ALLLE + IK+ P++N+LLRDDKS+PYI ++ +H+ P L HR +G YFGP+ + Sbjct: 76 DALLLENDYIKQYMPKYNVLLRDDKSYPYIFLS-QHEHPRLAYHRGPLREKGYYFGPYPN 134 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 AV ++++ +Q+ F +R C D ++ RTRPCL +Q+ RCS PC G++S+ +Y E V A Sbjct: 135 GGAVRESLHLMQKLFPIRQCDDLYYKSRTRPCLQYQLSRCSAPCVGKVSNAEYDEQVKLA 194 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCF 245 FL G + + ++ M +A ++ YE A RD++ AL + + N MD Sbjct: 195 SLFLKGKDKQVISELVAKMEEAAEQQAYEQAARFRDQIMALRRVAEQQEVSGNTGDMDVI 254 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPE 301 +++ +AC F G+ G+ +++ +++ ++L FL QFY + + P+ Sbjct: 255 GVHYASGIACFHLLFIREGKIFGSRSYYPTVPAQTDIEEVLRSFLLQFYLNADIQRTIPK 314 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 +++S EE LE + + K I + ++ + AL NA + +LS + + Sbjct: 315 EVVISHHFEELHELEAAVSEALNKKFSIKTNVRADRASFLRLALTNATNAVMTRLSHKNT 374 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 + + L +R+E +D SH MG S V VV G K +YR++N+ Sbjct: 375 VEQRFVLLEEILELNAPIQRMECFDISHTMGESTVASCVVFNREGPHKAEYRRYNIEG-- 432 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 + DD A M+ + RRF ++ + PD++ +DGG GQL AQ Sbjct: 433 ITPGDDYAAMKQAISRRFDKI---------------DASGKIPDILFIDGGLGQLRIAQQ 477 Query: 482 VLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAH 538 ++ + +N++ +I +AKG R G+E E + L P L+ IQ +RDE+H Sbjct: 478 IVDEKFVNLDKAPQLIGVAKGESRKPGLETLIFGDTESSFSLEDDSPALHLIQHIRDESH 537 Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR RR+K S L+ I GIGP R++ LLQ G ++ + +S LA + GIS Sbjct: 538 RFAITGHRNRRQKTRNTSTLESIPGIGPKRRKALLQHLGGLQEVKGASVAELAKVPGISI 597 Query: 598 KIACKIYNHFH 608 ++A I++ Sbjct: 598 EMAQTIHDALR 608 >gi|332306858|ref|YP_004434709.1| excinuclease ABC, C subunit [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174187|gb|AEE23441.1| excinuclease ABC, C subunit [Glaciecola agarilytica 4H-3-7+YE-5] Length = 608 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 203/614 (33%), Positives = 330/614 (53%), Gaps = 25/614 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M + V+YVGKA NL+ R+ SY S + + ++ QI ++ TV Sbjct: 13 LKDLTHQPGVYRMYNHKQDVIYVGKAKNLKNRVSSYFRSQVDSIKTQSLVKQIAHMDVTV 72 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +E EA +LE N+IK+ KPR+N+LLRDDKS+P+I ++ H+ P L HR ++G YF Sbjct: 73 VHSEAEAFILENNLIKKYKPRYNVLLRDDKSYPFIFLS-DHQHPRLANHRGPKKLKGEYF 131 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GP+ S AV +++ ++QR F +R C DS +R R+RPCL +Q++RC+GPC ++ E+Y Sbjct: 132 GPYPSAWAVRESLRTMQRIFPIRQCEDSYYRARSRPCLQYQLQRCAGPCVDGLVTDEEYQ 191 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 V A+ FL G N + + + + M A+ +E+A +RD+++AL+ +Q N+ Sbjct: 192 AQVDLARMFLKGKNKQVIDSLVQRMESASENLRFEAAARYRDQISALNKVQEQQWVSGNQ 251 Query: 242 --MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--DK 297 MD F + +A IQ F + G+ +F+ K +++T+ ++ F+ QFY +K Sbjct: 252 EEMDVFGFAYRNGIASIQGLFIRDNKLLGSKSFYPKVPADATDEEVFQSFILQFYLAGNK 311 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P+ I+ E E +E K+ G +++ + EKR+ ++ A NA + K Sbjct: 312 VIPKQIVTPIELSEQGAIEELLTKEAGRRIQFYRGVRDEKRRYLDLANTNAENALIAKQG 371 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + S + K +R+E +D SH G V VV G K YR+FN+ Sbjct: 372 QQKSVFARYTELEKILEFEQPIQRMECFDISHTSGQLTVASCVVFNREGPFKADYRRFNI 431 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + DD A M L RR+ + + + PD++ +DGGKGQL+ Sbjct: 432 EG--ITPGDDYAAMAQALARRYRDVKDDSK---------------IPDILFIDGGKGQLT 474 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDE 536 A+ + E + +I +AKG R AG+E + + L+ L+ IQ +RDE Sbjct: 475 QAEEYFEDWKHEKKPLLIGVAKGSSRKAGLETLILAGNHATIPLSGDSIALHLIQHIRDE 534 Query: 537 AHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 +HRFAIT HR RR+K S L+ I G+G R++ LL+ G ++ I ++S +A++ GI Sbjct: 535 SHRFAITGHRARRQKDKKTSKLESIPGVGAKRRQSLLKYMGGLQGILQASRSEIANVPGI 594 Query: 596 SKKIACKIYNHFHK 609 S ++A IY+H H Sbjct: 595 SAELADTIYDHIHN 608 >gi|294789082|ref|ZP_06754321.1| excinuclease ABC subunit C [Simonsiella muelleri ATCC 29453] gi|294482823|gb|EFG30511.1| excinuclease ABC subunit C [Simonsiella muelleri ATCC 29453] Length = 613 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 212/619 (34%), Positives = 329/619 (53%), Gaps = 28/619 (4%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + +P GVY+M+ VLYVGKA NL++R+ SY ++H+ RI+ MI QI + Sbjct: 11 IFLKSLPNSSGVYRMIAADDSVLYVGKAVNLKRRVSSYFQKSDHSPRISLMIKQIAWVEI 70 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T+T +E EAL+LE N+IK L P++NIL RDDKS+PY++I+ H P L R + Sbjct: 71 TLTRSEAEALILENNLIKSLSPKYNILFRDDKSYPYLMIS-GHTFPKLAYFRGTPQKPNQ 129 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGP+ + AV +I LQ+ F LR+C DSVF HR RPCLL QIKRCS PC G +S + Y Sbjct: 130 YFGPYPNGYAVRDSIEILQKVFQLRTCEDSVFSHRDRPCLLAQIKRCSAPCVGSVSRDDY 189 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E V A FL+G +L + + + M QA D+E+A RD++ AL IQ+ Sbjct: 190 AEQVRNAAAFLNGKTADLLKDLEKQMFQAADDLDFETAAKLRDQIQALGVIQSKQFIDSQ 249 Query: 241 ------RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQ 292 +D +L C+ G++ G +FF T + F+ Q Sbjct: 250 SVGNQADIDIVALAQANGGVCLHWVSIRGGRHVGDKSFFPDTRHDPNPNGQDYAEAFVAQ 309 Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 Y K P+ ++ + L+ + ++ ++ ++GE++ + +A+ NA + Sbjct: 310 HYLGKMKPDVLICNFRLP--ESLQAALNSEHSRAIQFPKAEKGERKVWLNRAIQNAEHAL 367 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 +Q ++ Q + + LP +R+E +D SH G + + VV + +Q Sbjct: 368 SQHQLQNVNQQARVAALAEIVGLPESDLQRLECFDISHTQGEATMASCVVYDDFAMQPSQ 427 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YR++N+ T DD MR VL RR+ ++ + + +PD V++DG Sbjct: 428 YRRYNITT---ATNDDYTAMREVLTRRYGKMKQAQ---------AAGEVVRFPDAVLIDG 475 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFI 530 G GQ+ A V ++L + I ++ IAKG +R AG+E+ + GE L P L+ + Sbjct: 476 GMGQIGVAVAVWEELGLT--IPLVGIAKGVERKAGLEELILPFSGERFRLPPNSPALHLL 533 Query: 531 QRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 Q +RDE+HRFAIT R +R KA S L++I+G+G RK LL FG ++ + +S + L Sbjct: 534 QTVRDESHRFAITGMRAKRDKARVTSSLNDIDGVGAKRKAALLMRFGGLRGVQAASVDDL 593 Query: 590 ASIEGISKKIACKIYNHFH 608 A EGIS+ +A KIY + H Sbjct: 594 AQTEGISRALAEKIYEYLH 612 >gi|56459762|ref|YP_155043.1| excinuclease ABC subunit C [Idiomarina loihiensis L2TR] gi|81363435|sp|Q5R0A6|UVRC_IDILO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|56178772|gb|AAV81494.1| Nuclease subunit of the excinuclease complex, UvrC [Idiomarina loihiensis L2TR] Length = 612 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 205/614 (33%), Positives = 329/614 (53%), Gaps = 27/614 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY+M D +G V+YVGKA +L+KR+ SY + ++ QI ++ TVT Sbjct: 18 HLTHQPGVYRMYDESGDVIYVGKAKDLRKRVSSYFREKVDRMKTQVLVKQIASMDVTVTN 77 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EAL+LE + IK+ +PR+N+LLRDDKS+PYI++T H+ P L HR + +G YFGP Sbjct: 78 TEAEALILENSFIKKYRPRYNVLLRDDKSYPYIILT-SHQHPKLGFHRGARRAKGDYFGP 136 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F + AV +++N LQ+ F +R C DS +R RTRPCL +Q+KRC PC + ++Y E V Sbjct: 137 FPNGSAVRESLNLLQKLFPIRQCDDSYYRARTRPCLQYQLKRCLAPCVNVCTDDEYNEQV 196 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 AK+FL G N + +++ M QA+ D+E A RD++AAL Q N ++ Sbjct: 197 ALAKQFLQGKNQQVIDELMNKMEQASTDLDFERAARFRDQIAALRKTQERNSVTGSQQEL 256 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KP 298 D L + +Q F +G+ ++F K +++ + ++L FL QFY + Sbjct: 257 DVIGLARGNGMTTVQMLFIRDNHLQGSRSYFPKVPTDTPDDEVLRAFLLQFYLSDTAGRK 316 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P ++L + + ++L VK+ +G+KR+ A NA + +L+ Sbjct: 317 IPREVVLPVDVQPDNVLAEVMSDALSQPVKLQSSVRGDKRQYQSLAQKNAVNALESRLNQ 376 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + + + + +R+E +D SH MG V VV +NG K+ YR++N+ Sbjct: 377 QSTMNRRTQALQQVLEFGVPIQRMECFDISHTMGQQTVASCVVFDQNGPKKSDYRRYNI- 435 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + DD A M L +R+ + + PD++ +DGGKGQL+ Sbjct: 436 -TGITPGDDYAAMSKALAKRYDNAKEQ---------------GNIPDILFIDGGKGQLAQ 479 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEA 537 A+ E + +I +AKG R G+E + E + L+ L+ IQ +RDE+ Sbjct: 480 AENYFNDWGKEAPV-LIGVAKGESRKPGLETLIMAGSHETIPLSKDASALHLIQHIRDES 538 Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR++R K S L++I+G+G R++ +L++ G ++ + +S + LAS+ GIS Sbjct: 539 HRFAITGHRQKRAKVKKTSTLEQIDGVGAKRRQAILKNLGGLQEVKNASIDKLASVPGIS 598 Query: 597 KKIACKIYNHFHKN 610 + +A KIY F Sbjct: 599 RSLAEKIYYSFRDE 612 >gi|302385500|ref|YP_003821322.1| excinuclease ABC, C subunit [Clostridium saccharolyticum WM1] gi|302196128|gb|ADL03699.1| excinuclease ABC, C subunit [Clostridium saccharolyticum WM1] Length = 623 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 202/620 (32%), Positives = 325/620 (52%), Gaps = 21/620 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M D ++YVGKA +L+ R++ Y S+ N T +I M+S+I + Sbjct: 11 ELKKLPSQPGVYLMHDKRDEIIYVGKAISLKNRVRQYFQSSRNKTAKIEQMVSRIARFEY 70 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE N+IK +PR+N +L+DDK++PYI +T P + RD + Sbjct: 71 IITDSELEALVLECNLIKEHRPRYNTMLKDDKTYPYIKVTVYEDYPRILFSRDMKKDKSK 130 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV+ TI + + + +R+C ++ R + RPCL + IK+CS PC IS E Sbjct: 131 YFGPYTSAGAVKDTIEMIHKLYQIRTCNRNLPRDIGKERPCLNYHIKQCSAPCQNYISKE 190 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235 +Y + +H A FL G + + + M A+ + DYE AI RD L ++ I Sbjct: 191 EYWKSIHRALDFLGGKYGPVIKMLEEKMQAASEEMDYEKAIECRDLLNSVRQIAQKQKIT 250 Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 DS D ++ ++ A + F G+ G F + + N+QIL+ F++QFY Sbjct: 251 DSGMEDRDIIAMAKDEKDAVVSVFFVREGRLIGREHFHVSIATAEDNSQILTSFVKQFYA 310 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HR 350 P P+ + + E+ ++ + G KVKI VP++G+K +++E A NA + Sbjct: 311 GTPFIPKELWIQTGLEDEGVIGEWLSGKRGQKVKIVVPRKGQKERLVELAEKNAVLVLSQ 370 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E+ + + L I RIE +D S+I G +VG M+V + +N Sbjct: 371 DKEKIKREELRTVGAMNEVGDWLGLKGIK-RIEAFDISNISGFESVGSMIVYEDGKPKRN 429 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE-YSFPSWPDVVIL 469 YRKF + VK +D A M VL RRFS +K E+L +E SF +PD++++ Sbjct: 430 DYRKFKIKW--VKGANDYASMNEVLTRRFSHGLKEAESLKEKGVDEELGSFTRFPDLIMM 487 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGG+GQ++ A VLK+L++ I + + K + ++ Sbjct: 488 DGGRGQVNIALEVLKELDIS--IPVCGMVKDDNHRTRG---LYYNNVEIPIDRHSEGFKL 542 Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 + R++DEAHRFAI HR R K S LD+I GIGP R++ L++ F ++ I ++ E Sbjct: 543 VTRIQDEAHRFAIEYHRSLRSKGQVKSILDDIPGIGPNRRKALMRRFKGLEAIKEATLEE 602 Query: 589 LASIEGISKKIACKIYNHFH 608 L+ G++ A +Y FH Sbjct: 603 LSQTPGMNALAAKSVYEFFH 622 >gi|82702400|ref|YP_411966.1| excinuclease ABC, C subunit [Nitrosospira multiformis ATCC 25196] gi|119367678|sp|Q2Y9J7|UVRC_NITMU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|82410465|gb|ABB74574.1| Excinuclease ABC subunit C [Nitrosospira multiformis ATCC 25196] Length = 606 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 226/611 (36%), Positives = 339/611 (55%), Gaps = 28/611 (4%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PGVY+M++ AG+V+YVGKA +L+KR+ SY N R M+SQI I TVT + Sbjct: 16 LPSQPGVYRMMNSAGQVIYVGKAIDLKKRVSSYFQKNGLAPRTQLMVSQIAGIETTVTRS 75 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLE N+IK L PR+NIL RDDKS+PY++++ H+ P L HR + YFGPF Sbjct: 76 EAEALLLENNLIKSLNPRYNILFRDDKSYPYVILS-GHRFPRLGFHRGPLDKKHHYFGPF 134 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + V ++I LQ+ F +R+C DSVF +RTRPCLL+QIKRCSGPC +S E Y E Sbjct: 135 PNAGMVRESIQLLQKVFRIRTCEDSVFSNRTRPCLLYQIKRCSGPCVDLVSEEVYAEDAR 194 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY------ 239 +A+ FL G + + I R M++A +++YE A + RD++ +L I Sbjct: 195 DAELFLQGKQTEVLKSITRKMHEAAEEQEYEQAALFRDQIQSLRKICERQFVDSGRALDA 254 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 + + C + + C+ G++ G +FF + A + FL Q Y ++ Sbjct: 255 DIVACVAENNGGGRVCVNLAMVRGGRHLGDKSFFPQNAEGYDLATVAEAFLAQHYLNRSI 314 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P+ I++ E SL + +Q G+KV I V G +R +E A NA + Q L + Sbjct: 315 PDLIIVGERVPRESLQAL-LTQQAGHKVIINVNPIGSRRVWLEMATENAALALEQMLGRQ 373 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 S + L + + + RIE +D SH MG + + VV G ++YR++N+ Sbjct: 374 ASQEERLLALQQALDMTGLS-RIECFDISHTMGEATIASCVVYDNFGMRNSEYRRYNITD 432 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A MR VL RR+ ++ + E NL PD++++DGG+GQ++AA Sbjct: 433 --ITPGDDYAAMRDVLSRRYHKIAEGEGNL--------------PDLILIDGGRGQINAA 476 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGME-KFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 V+ +L + + ++ +AKG +R G+E F + L L+ P L+ IQ++RDEAH Sbjct: 477 LEVMVELGLNDA-NLVGVAKGEERKPGLEQLIFPGVKKPLQLSKDHPGLHLIQQIRDEAH 535 Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAI HR + KA S L++I GIG R++ LL FG +K + +S E L +GIS+ Sbjct: 536 RFAIYGHRAKLGKARVSSSLEQIAGIGAKRRQSLLARFGGLKGVRTASIEELQQADGISR 595 Query: 598 KIACKIYNHFH 608 +A KIY H Sbjct: 596 ALAEKIYRELH 606 >gi|284008139|emb|CBA74371.1| UvrABC system protein C (excinuclease ABC subunit C) [Arsenophonus nasoniae] Length = 600 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 220/618 (35%), Positives = 339/618 (54%), Gaps = 31/618 (5%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + + PGVY+M D +G V+YVGKA +L+KR+ SY + + ++ I I TVT Sbjct: 2 QTVTSQPGVYRMYDTSGVVIYVGKAKDLKKRLASYFRGQVTSRKTEQLVKNIAQIDITVT 61 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLE N IK +PR+N+LLRDDKS+PYI ++ K P L HR + +G YFG Sbjct: 62 HTETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLS-ADKHPRLAMHRGAMKAKGDYFG 120 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYME 182 PF SV+AV +T+ LQ+ F LR C DSV+R+R+RPCL +QI RC GPC ++ E+Y + Sbjct: 121 PFPSVNAVRETLALLQKLFPLRQCEDSVYRNRSRPCLQYQINRCLGPCVSGLVTDEEYYQ 180 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242 V + FLSG + + ++ +NM QA+ +E+A +RD++ A+ + N Sbjct: 181 QVEYVRLFLSGKDQQVLNQLIQNMEQASQTLKFENAARYRDQIQAVRAVTEQQFVSGNTQ 240 Query: 243 DCFSL--YHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD---- 296 D ++ ++ +AC+Q F G+ G+ +++ K + + ++++ FL QFY Sbjct: 241 DLDAISVAYHLGIACVQVLFIRQGKVLGSRSYYPKIPANTQLSEVVQTFLGQFYLQGSEI 300 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 + P ILL E +L K G K+ I V +G K K ++ A NA + K+ Sbjct: 301 RSLPAEILLDFLLPEKALFTDLLTKIAGRKINIQVRPRGIKAKYLKLARTNAATALATKV 360 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + + + ++ + R+E +D SH G V VV NG ++++YR++N Sbjct: 361 AQQSTIHQRMEALADLLGIE-KIYRMECFDISHTSGQQTVASCVVFDSNGPLRSEYRRYN 419 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + DD A M VL RR+ + + + PDV+ +DGGKGQL Sbjct: 420 IID--ITPGDDYAAMYQVLTRRYGKHVDESK---------------VPDVIFIDGGKGQL 462 Query: 477 SAAQGVLKKLNVENRIT---IISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQR 532 + A GV + LNV+ IT +I +AKG R AG+E F GE L L P L+ IQ Sbjct: 463 AQAIGVFQALNVDWDITRPKLIGVAKGHDRKAGLETLFFKPDGEGLSLPPDSPALHLIQN 522 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+H AIT HR+RR K S L+ I G+GP R+++LL+ G ++ + +S + +A Sbjct: 523 IRDESHNHAITGHRQRRAKVRNTSTLESIEGVGPKRRQMLLKYMGGLQALRNASIDEIAK 582 Query: 592 IEGISKKIACKIYNHFHK 609 + IS +A KI+N + Sbjct: 583 VPTISYALAEKIHNALKQ 600 >gi|269836449|ref|YP_003318677.1| excinuclease ABC, C subunit [Sphaerobacter thermophilus DSM 20745] gi|269785712|gb|ACZ37855.1| excinuclease ABC, C subunit [Sphaerobacter thermophilus DSM 20745] Length = 609 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 200/611 (32%), Positives = 319/611 (52%), Gaps = 31/611 (5%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVTCTEV 67 PGVY M + G V+YVGKA +L+ R++SY S + ++ I + T T Sbjct: 16 APGVYLMKNARGEVIYVGKAASLRSRVRSYFGSRRGMDGKTRELVEHIADFEVIRTDTPT 75 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EAL+LE +IKR +P++N++LRDDK++PYI IT+ P + R YFGP+ S Sbjct: 76 EALILENELIKRYQPKYNVMLRDDKTYPYIRITN-EPFPRVISTRRLVNDGSRYFGPYTS 134 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 +V +T++ L+R F R C + + RPCL + I RC GPC G + +Y + + + Sbjct: 135 ASSVHRTLDLLKRLFPYRPCDIEITGNAPRPCLYYHIGRCVGPCIGAVDQAQYAQVIDKV 194 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDC 244 FL G L + M A D+E A RD + A+ H+ + D Sbjct: 195 VLFLEGRGEELLPSMQAEMEAAAEALDFERAARIRDDIRAIKHVLEQQKIVSGTARNFDV 254 Query: 245 FSLYHN-KNLACIQTCFFHFGQNRGTCTFFLKTD-SESTNAQILSYFLRQFYTDKP-CPE 301 ++ A +Q G+ G+ F L+ + + Q+LS F+ QFY D P Sbjct: 255 LAVAQGPGGDAAVQVATIRNGKMLGSEYFMLRGARIDDSPGQLLSSFVTQFYQDAAMVPP 314 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLS 357 ++L + +L+ ++ G VK+TVPK+GE+R+++E +A + + L+ Sbjct: 315 ELVLQHPLADEALVREWLRERRGGTVKLTVPKRGERRQLVEMVAKSAQENLEQDRVRWLN 374 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 E + + L +P+RIE +D S + G +V MVV + K+ YR+F++ Sbjct: 375 DEQRMTAAMTELADALGLEKMPRRIECFDISTLHGTHSVASMVVFEDGKPKKSDYRRFSI 434 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 V Q+D AMM+ V+ RRF + + + + + PD+VI+DGGKGQL+ Sbjct: 435 KG--VAGQNDFAMMQEVIRRRFKRAARED---------VTEEWRTLPDLVIVDGGKGQLN 483 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 AA VL++L V + I+ +AK + E F + + +VL L+ +QR+RDEA Sbjct: 484 AALEVLRELGVS--VPIVGLAKENE-----ELFLPGRRDPVVLPRDAQSLFLVQRVRDEA 536 Query: 538 HRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFA+T HRKRR K+ S LD + G+GP R++ LL++FG+V I ++S E LA++ GI Sbjct: 537 HRFAVTFHRKRRTKSTFRSALDGLKGVGPARRKALLKTFGSVARIRQASVEELAAVPGIG 596 Query: 597 KKIACKIYNHF 607 ++A +I Sbjct: 597 PRLAEQIKEEL 607 >gi|295091053|emb|CBK77160.1| excinuclease ABC, C subunit [Clostridium cf. saccharolyticum K10] Length = 621 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 202/620 (32%), Positives = 324/620 (52%), Gaps = 21/620 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M D ++YVGKA +L+ R++ Y S+ N T +I M+S+I + Sbjct: 7 ELKKLPAQPGVYIMHDDKDEIIYVGKAISLKNRVRQYFQSSRNKTAKIEKMVSRIARFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE N+IK +P++N +L+DDK++PYI +T P + R + Sbjct: 67 ILTDSELEALVLECNLIKEHRPKYNTMLKDDKTYPYIKVTVSEAFPRILFSRTMKKDKNK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGPF S AV+ I+ L + + +R+C+ ++ R + RPCL + I++C GPC G IS E Sbjct: 127 YFGPFTSSGAVKDMIDLLHKIYRIRTCSRNLPRDIGKDRPCLYYHIRQCDGPCQGFISQE 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y + + E FLSG + + + M A+ + ++E A +RD L ++ I Sbjct: 187 DYQKQIKEVLDFLSGKYDPVTKLLTDRMYAASEEMEFEKAAEYRDLLKSVRQIAQKQKIT 246 Query: 239 ---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D ++ ++ +Q F G+ G F ++ + TN+QIL+ F++QFY Sbjct: 247 SQSMDDRDIIAMAKDERDVVVQVFFVRDGRLIGREHFHVEAGTAETNSQILNGFVKQFYA 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350 P P I EE E+ ++ + G KVKI VPK+GEK K++E A NA + Sbjct: 307 GTPFIPHEIWCQEELEDAEVISSFLSGRRGQKVKILVPKKGEKEKLVELAKKNAKMVLDQ 366 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E+ + L + RIE YD S+I G +VG M+V + +N Sbjct: 367 DKEKIKREELRTTGAMNQIGGLIGLSRVR-RIEAYDISNISGFESVGSMIVYEDGRPKRN 425 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVIL 469 YRKF + V+ +D A MR VL RRFS + EE L SF +PD++++ Sbjct: 426 DYRKFRIKT--VQGPNDYASMREVLTRRFSHGLAEREEILEGGGDLSMGSFTRFPDLIMM 483 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGG+GQ++ A VL++L + I + + K E + ++ Sbjct: 484 DGGRGQVNIALEVLEELGIA--IPVCGMVKDDSHRTRG---LYYNNEEVPIDRFSEGFKL 538 Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 I R++DEAHRFAI HR R K S LD+I GIGP R++ L++ F T++ + + E Sbjct: 539 ITRIQDEAHRFAIEYHRSLRGKTQVRSVLDDIRGIGPARRKALMRYFKTIEAVREAGVEE 598 Query: 589 LASIEGISKKIACKIYNHFH 608 L + +++ A +Y+ FH Sbjct: 599 LLEVPQMNQAAAEAVYSFFH 618 >gi|254822013|ref|ZP_05227014.1| excinuclease ABC subunit C [Mycobacterium intracellulare ATCC 13950] Length = 636 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 187/633 (29%), Positives = 302/633 (47%), Gaps = 35/633 (5%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTCTEV 67 PGVY+ D GRV+YVGKA +L+ R+ SY + R M++ + +TV TEV Sbjct: 2 EPGVYRFRDPHGRVIYVGKAKSLRSRLTSYFSDISGLHPRTRQMVTTAAKVEWTVVNTEV 61 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EAL LE N IK PRFN+ RDDKS+P + +T + P L +R YFGP++ Sbjct: 62 EALQLEYNWIKEFDPRFNVRYRDDKSYPVLAVTLNEEFPRLMVYRGPRRKGVRYFGPYSH 121 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 A+ +T++ L R F R+C+ VF+ RPCLL I +CS PC G +S+E++ + V Sbjct: 122 AWAIRETLDLLTRVFPARTCSAGVFKRHRQIDRPCLLGYIDKCSAPCIGRVSAEQHRQIV 181 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 + FLSG ++ + MN A + D+E A RD L AL + Sbjct: 182 DDFCDFLSGKTDRFARELEQQMNAAAERLDFERAARLRDDLGALKRAMEKQAVVLGDGTD 241 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLK---TDSESTNAQILSYFLRQFYTD-- 296 D + + A +Q G+ RG + ++ +S Q++ FL QFY + Sbjct: 242 ADVVAFADDDLEAAVQVFHVRGGRVRGQRGWIVEKSADPGDSGEEQLVEQFLTQFYGEQA 301 Query: 297 ----------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 P P +L+ L G +V + VP++G+KR + E Sbjct: 302 ELGGAADESVNPVPREVLVPCLPSNADELTSWLSGLRGSRVVLRVPRRGDKRALAETVQR 361 Query: 347 NAHRSHTQKLSTEISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVV 402 NA + Q L++ + L P RIE D SH+ G VG +VV Sbjct: 362 NAKEALQQHKLKRAGDFNARSAALQNIQEALGLSEAPLRIECVDISHVQGTDVVGSLVVF 421 Query: 403 GENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLN-FHPKKQEYSF 460 + K+ YR F++ + + DD A + V RRF++ + + + N P+ + F Sbjct: 422 EDGLPRKSDYRHFSIREAAGQGRSDDVASIAEVTRRRFARHLSEQNDPNMLSPEGKSRRF 481 Query: 461 PSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVL 520 P++ ++DGG Q++AA VL+ L + + + +I +AK + E + + + +++ Sbjct: 482 AYPPNLYVVDGGAPQVNAASAVLEGLGITD-VAVIGLAKRLE-----EVWVPSEPDPVIM 535 Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVK 579 LY +QR+RDEAHRFAI HR +R K S LD + G+G R++ L+ FG++ Sbjct: 536 PRNSEGLYLLQRVRDEAHRFAIAYHRSKRSKRMTASVLDSVPGLGEHRRKALVSHFGSIA 595 Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 + ++ + + ++ GI A + + Sbjct: 596 RLKEATVDQITAVPGIGVATATAVLEALRPEQA 628 >gi|322833699|ref|YP_004213726.1| excinuclease ABC, C subunit [Rahnella sp. Y9602] gi|321168900|gb|ADW74599.1| excinuclease ABC, C subunit [Rahnella sp. Y9602] Length = 611 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 219/618 (35%), Positives = 331/618 (53%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D +G V+YVGKA +L+KR+ SY + + ++ I I TV Sbjct: 12 LKTVTSQPGVYRMYDASGTVIYVGKAKDLKKRLSSYFRVQVSSRKTETLVKNIAQIDVTV 71 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P I ++ P L HR + +G YF Sbjct: 72 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPLIFLS-ADNHPRLSVHRGAKHAKGEYF 130 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+ +R+RPCL +QI RC GPC +S E Y Sbjct: 131 GPFPNSYAVRETLALLQKLFPIRQCENSVYSNRSRPCLQYQIGRCLGPCVKGLVSEEDYK 190 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + V + FLSG + + ++ M +A+ +E A RD++ A+ + N Sbjct: 191 DQVEYVRLFLSGKDQQVVTQLVNRMEEASKALRFEDAGRIRDQIQAVRRVTERQFVSGNS 250 Query: 242 M--DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295 D + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 251 EDLDVIGVGFESGMACLHVLFIRQGKVLGSRSYFPKVPGGTDLGEVVQTFVGQFYLQGSQ 310 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL E LL S + G KV+I +G++ + ++ A NA + T K Sbjct: 311 QRTLPGEILLDFSLAEKDLLADSLSELAGRKVQIQSKPRGDRARYLKLARTNASAALTTK 370 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L+ + + L + K L R+E +D SH MG V VV NG V+++YR++ Sbjct: 371 LAQQSTIHQRLSELAKTLNLA-EINRMECFDISHTMGEQTVASCVVFDGNGPVRSEYRRY 429 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL+RR+ + + + + PDV+ +DGGKGQ Sbjct: 430 NI--TGITPGDDYAAMAQVLQRRYGKTLDDNK---------------IPDVIFIDGGKGQ 472 Query: 476 LSAAQGVLKKLNVE---NRITIISIAKGPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQ 531 L A V LNVE ++ +I IAKG R AG+E FFV +GE + L P L+ IQ Sbjct: 473 LGMALDVFHSLNVEWDKSKPLLIGIAKGADRKAGLETLFFVPEGEGIALPADSPALHVIQ 532 Query: 532 RLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RD++H AIT HR+RR K S L+EI G+GP R+++LL+ G ++ + +S E +A Sbjct: 533 HIRDDSHNHAITGHRQRRAKVRTTSALEEIEGVGPKRRQVLLKYMGGIQPLLNASVEEIA 592 Query: 591 SIEGISKKIACKIYNHFH 608 + GIS +A KI+N Sbjct: 593 QVPGISIALAEKIHNALK 610 >gi|163847590|ref|YP_001635634.1| excinuclease ABC subunit C [Chloroflexus aurantiacus J-10-fl] gi|222525445|ref|YP_002569916.1| excinuclease ABC subunit C [Chloroflexus sp. Y-400-fl] gi|163668879|gb|ABY35245.1| excinuclease ABC, C subunit [Chloroflexus aurantiacus J-10-fl] gi|222449324|gb|ACM53590.1| excinuclease ABC, C subunit [Chloroflexus sp. Y-400-fl] Length = 651 Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 203/636 (31%), Positives = 327/636 (51%), Gaps = 39/636 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVTC 64 +P+ PGVY D GR+LYVGK+ L+ R++SY + + + ++S I + VT Sbjct: 21 VPDQPGVYLWKDANGRLLYVGKSKRLRDRMRSYFGSPRSLSGKTRRLVSHIADFDIIVTQ 80 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E+EALLLE N+IK+ +P +NILL+DDK++PYI +T P ++ R YFGP Sbjct: 81 SELEALLLEMNLIKQHRPPYNILLKDDKTYPYIKVTVNEDWPRVFATRQVLNDGARYFGP 140 Query: 125 FASVDAVEKTINSLQRTFFLR------SCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 +AS +V + ++ L R F R + R +PCL +Q++RC GPC + ++ Sbjct: 141 YASPGSVYQALDVLNRLFAFRPPYECKDDKFNRHRKLGKPCLYYQMRRCLGPCVPGLVTK 200 Query: 179 KYMEFVHE-AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 + + +FL G + + ++ M QA + ++E A RDR+ A+ I Sbjct: 201 EAYRQAIDAVCRFLEGKSDQIVRELRAQMEQAAEQLEFERAAYLRDRIQAIEKISERQQV 260 Query: 238 ---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D + + A +Q F G+ F L+ ++ +L+ FL QFY Sbjct: 261 LRTVDTDQDVIAFAREEGSAVVQVLFIRGGKLINAEPFTLQGTEGESDEALLTSFLTQFY 320 Query: 295 TDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS-- 351 D P P N+LL++ EE ++ ++ G++V+ITVP++GEKR+++E A NA + Sbjct: 321 QDAPNIPPNLLLADHVEEPMIIASWLQQKSGHRVEITVPRRGEKRQLVELAANNARQKLR 380 Query: 352 --HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 Q L++E L + LP +P RIE YD S+I G +V MVV Sbjct: 381 EIREQWLNSEQRAVAALSELRDLLELPALPHRIECYDVSNIQGQHSVASMVVFERGSPRP 440 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIK-----------------NEENLNFH 452 YR+F + V +D A + V+ RRF + + Sbjct: 441 AHYRRFKIKT--VSGANDVASLHEVISRRFRRAAEALGETQTVTGMVADDDNKTSETGNT 498 Query: 453 PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV 512 ++ S+ PD++++DGG+ Q++AA L+ L +I ++ +AKGP R+ Sbjct: 499 DQQALESWAELPDLLLVDGGQAQVAAASAALRDLGFT-QIPVVGVAKGPDRNRFD--LIR 555 Query: 513 KKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLL 571 E LVL L IQR+ +EAHRFAIT HRK R KA S L++I GIGP RKR L Sbjct: 556 LDCEPLVLARDSKALALIQRIDEEAHRFAITYHRKLRSKATLRSSLEDIPGIGPKRKRAL 615 Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++FG++ I ++S + LA++ G+++K A ++ + Sbjct: 616 LKAFGSLDAIRQASIDELAAVPGMTRKAAEELKSLL 651 >gi|330838470|ref|YP_004413050.1| UvrABC system protein C [Selenomonas sputigena ATCC 35185] gi|329746234|gb|AEB99590.1| UvrABC system protein C [Selenomonas sputigena ATCC 35185] Length = 607 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 203/611 (33%), Positives = 318/611 (52%), Gaps = 35/611 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRFTVTC 64 +P+ PGVY M D GR++YVGKA L+ R++ Y S H ++ M+++I + +T Sbjct: 12 LPDSPGVYIMKDAKGRIIYVGKAVVLKNRVRQYFQSGKHQAPKVRAMVAKIADFETILTH 71 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +EVEAL+LE N+IK+ +PR+NI L+DDKS+PY+ +T + P + R + YFGP Sbjct: 72 SEVEALILECNLIKKHRPRYNISLKDDKSYPYLKVTLADEYPRVVVTRRVTKDGSRYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + S A+ +++ L+R F LR+C + RPCL + IKRC PC + E+Y + Sbjct: 132 YTSAGAMHESVKLLKRLFPLRTCKNMKVE---RPCLEYHIKRCLAPCCEPVDKEEYGAMI 188 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRM 242 E FL G ++++++R M +A D+E A RD++AA+ + + + Sbjct: 189 REVCLFLEGRTEQVEKELSRRMTEAAEDYDFERAARLRDQIAAVRKVAEKQNIVTGSGDQ 248 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-CPE 301 D + + A + G+ G F L E T+ +L+ FL+Q+Y P Sbjct: 249 DAIGMARSGLGAVVMVFLIRAGKMVGREHFLLSGSEEETDEALLTAFLKQYYHRAAFVPR 308 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST--- 358 ILL EET LLE ++ G KV + VP++G K ++E A NA + T + + Sbjct: 309 EILLPFPIEETELLEGWLAERKGAKVALAVPQRGTKHDVVEMARSNAEKYLTDEAARIEQ 368 Query: 359 -EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 +++ + L P R+E +D SH G V MVV K+ YR+F + Sbjct: 369 ANDQTLGAVRELGRYLGLKEEPMRMECFDISHNQGSETVASMVVFEGGLPKKSDYRRFKI 428 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + DD MR V ERR+++L ++E PD++I+DGGKGQLS Sbjct: 429 RSAEG-KPDDFLSMREVTERRYTKLAEDE----------------MPDLIIIDGGKGQLS 471 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 +A +++ + ++ +AK + F + ++L R LY I+R+RDEA Sbjct: 472 SALEIIRGAG-HLTVPVVGLAKQFE-----YIFTEGSSDPVILPRRSQALYLIERIRDEA 525 Query: 538 HRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HRK R K+ S LD I GIGP R++ L FGT+ I +S E LA+++G++ Sbjct: 526 HRFAITYHRKLRGKRNLVSVLDHIAGIGPKRRKALWNHFGTIAKIKAASVEELAAVDGMT 585 Query: 597 KKIACKIYNHF 607 A + N F Sbjct: 586 LPAAEAVKNFF 596 >gi|319786926|ref|YP_004146401.1| excinuclease ABC subunit C [Pseudoxanthomonas suwonensis 11-1] gi|317465438|gb|ADV27170.1| excinuclease ABC, C subunit [Pseudoxanthomonas suwonensis 11-1] Length = 626 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 229/606 (37%), Positives = 347/606 (57%), Gaps = 12/606 (1%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 + PGVY+M G +LYVGKA L++R+ SY + + RI M++QI + TVT T Sbjct: 18 LSTAPGVYRMYAADGSLLYVGKAGALKRRVASYFSNTPKSPRIHSMVAQIARMEVTVTRT 77 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLE +IK L PR+N+ LRDDKS+PY+L+T + + P L HR + G YFGP+ Sbjct: 78 EAEALLLENQLIKSLSPRYNVSLRDDKSYPYVLLT-REEWPRLAFHRGPRAVPGRYFGPY 136 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 AS AV +T+N + + F LRSC DSVFR+R+RPCL +QI RCS PC ++++ Y E V Sbjct: 137 ASASAVRETMNLMHKLFRLRSCEDSVFRNRSRPCLQYQIGRCSAPCVDLVAADDYAESVR 196 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMD 243 A FL G + L ++++ M +A ++E A RD LA L +Q + +D Sbjct: 197 RASLFLEGRSDELGKELSAAMEKAGQALEFEEAARLRDLLAQLRGMQARQYVDGHAANLD 256 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303 + + AC+ F G+N GT FF +T+ E + ++L+ F+ Q+Y ++P P I Sbjct: 257 VIACEMQGSHACVLLLAFRDGRNLGTRAFFPRTNGEDSAEEVLAAFVSQYYAEQPAPPEI 316 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 +L + L+E++ + G KV + +GE+ +E A NA + ++++ + Q Sbjct: 317 VLDRAIPDADLIELALAEGAGRKVVLKSSVRGERAGYLELARRNAKVALASEMASRNAQQ 376 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 + + L P R+E +D SH +G + V VV G V+NQYR++N+ + ++ Sbjct: 377 LRSDALRELLGLEEAPSRVECFDISHTLGEATVASCVVFDPAGPVRNQYRRYNI--SGIE 434 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD A MR +ERRF + ++ E + + PDV+++DGG GQL+ A+ VL Sbjct: 435 PGDDYAAMRQAIERRFRRAMEAEAGVA-----PPGANSVLPDVLLIDGGAGQLAQAREVL 489 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 L VEN + ++ +AKG +R AG E G + P L FIQ++RDEAHRFAIT Sbjct: 490 ADLGVEN-VLLVGVAKGEQRRAGDETLVFPDGREVRPGAASPALQFIQQVRDEAHRFAIT 548 Query: 544 THRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR RR+KA S L++I GIGP R+ LL+ FG + + + E +A +EGI+ +A + Sbjct: 549 GHRGRRQKARTSSRLEDIPGIGPRRRAALLKHFGGLGGLKAAGEEEIARVEGINAALATR 608 Query: 603 IYNHFH 608 IY H Sbjct: 609 IYATLH 614 >gi|54295483|ref|YP_127898.1| hypothetical protein lpl2570 [Legionella pneumophila str. Lens] gi|81367729|sp|Q5WTF5|UVRC_LEGPL RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|53755315|emb|CAH16811.1| hypothetical protein lpl2570 [Legionella pneumophila str. Lens] Length = 618 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 220/621 (35%), Positives = 339/621 (54%), Gaps = 34/621 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P PG+Y+MLD G VLYVGKA NL+KR+ SY N + ++SQI +I +VT Sbjct: 16 KLPSEPGIYRMLDEEGTVLYVGKAANLKKRVNSYFSKQNTGVKTRALVSQIKSIEISVTR 75 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFG 123 +E EALLLE+N+IK L+P++N+LLRDDKS+PYI +++ P + +R G++FG Sbjct: 76 SETEALLLESNLIKALRPKYNVLLRDDKSYPYIHLSNHPDFPRVELYRSKKKPPSGNFFG 135 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ V AV +TI ++Q+ F +R+C DS F+ R+RPCL +QIKRC+ PC IS E Y Sbjct: 136 PYPGVAAVRETIVTIQKIFKIRNCRDSYFKARSRPCLQYQIKRCTAPCVHYISPENYKLS 195 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NR 241 V +A +FL G + +++A M A + ++E A + RD++ L IQ + Sbjct: 196 VEDAIRFLQGKCQIILDELAERMKNAVSQLNFEEAAVLRDQIKNLRLIQEQQGVVQLRGD 255 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ---------ILSYFLRQ 292 D ++ ACIQ GQ + +FF + + F+ Sbjct: 256 ADVIAIEVRPGFACIQCVTIREGQVLNSQSFFPTVPYAVLDEELDANSLWQQTFEAFIGF 315 Query: 293 FYTDKP--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR 350 +Y D P+ I+ ++ E+ LE ++ G KI V +G K + ++ A+ N Sbjct: 316 YYLDTSERIPDLIITNQSITESRSLEYILSQRRGKSCKIQVNPRGVKSRWMDFAVNNLRI 375 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 S + +S + + + + AL +R+E +D SH G + V VV G + Sbjct: 376 SVAEYVSKHSTIRSRYQALRQLLALDKNIERMECFDISHTQGEATVASCVVFDTEGPRPS 435 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 +YR+FN+ + DD A M + RRF +LI PDV+I+D Sbjct: 436 EYRRFNIEG--ITPGDDYAAMEQAVTRRFKRLI---------------GAQLLPDVLIID 478 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYF 529 GGKGQ+S + VL L VE+ IT++ ++KGP R AG EK V + VL L+ Sbjct: 479 GGKGQVSIVKRVLTSLGVED-ITLLGVSKGPSRKAGWEKLILVNENREFVLPEDSKALHL 537 Query: 530 IQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 +Q +RDEAHRFAIT HRK+R+K S L+ I G+G R++ LLQ FG ++ ++++S E Sbjct: 538 LQHIRDEAHRFAITAHRKKRQKTRVESTLESIEGVGAKRRQALLQRFGGLRELAKASLEE 597 Query: 589 LASIEGISKKIACKIYNHFHK 609 + ++GIS+++A +IY HFH Sbjct: 598 ICKVQGISEQLAKRIYEHFHP 618 >gi|37525944|ref|NP_929288.1| excinuclease ABC subunit C [Photorhabdus luminescens subsp. laumondii TTO1] gi|81419566|sp|Q7N5C7|UVRC_PHOLL RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|36785373|emb|CAE14320.1| excinuclease ABC subunit C [Photorhabdus luminescens subsp. laumondii TTO1] Length = 610 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 215/618 (34%), Positives = 340/618 (55%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D +G V+YVGKA +L+KR+ SY + + + ++ I I TV Sbjct: 11 LKTVTSQPGVYRMYDTSGTVIYVGKAKDLKKRLASYFRAQVTSRKTESLVKNIVQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+PYI ++ K P L +R + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLS-ADKHPRLAMYRGAKHFKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +++ LQ+ F +R C DSV+R+R+RPCL +QI RC GPC +S ++Y Sbjct: 130 GPFPNTHAVRESLILLQKLFPIRQCEDSVYRNRSRPCLQYQIGRCLGPCVKGLVSEDEYQ 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IY 239 + V + FLSG + + ++ M QA+ + +E A +RD++ A+ + Sbjct: 190 QQVDYIRLFLSGKDQQVLTRLIERMEQASQQLKFEDAARYRDQIQAVRQVTERQFVSGTD 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295 + +D S+ + +AC+ F G+ G+ +++ K + +T +I+ FL QFY Sbjct: 250 DDLDVISVAFDAGMACLHVLFIRQGKVLGSRSYYPKIPTGTTLDEIVQTFLGQFYLQGSQ 309 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ P ILL E +L S + G K+ I +G+K + ++ A NA + + + Sbjct: 310 NRTLPSEILLDFTLPEKDILSDSLSEISGRKIHIQTRPRGDKARYLKLARTNATIALSTR 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L TK L +R+E +D SH MG V VV NG ++++YR++ Sbjct: 370 LSQQSTIHQRLDSLTKLVKLA-KIQRMECFDISHTMGEQTVASCVVFDSNGPLRSEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + + DD A M VL RR+ + + + PD++ +DGGKGQ Sbjct: 429 NI--SGITPGDDYAAMNQVLRRRYGKALDESK---------------IPDIIFIDGGKGQ 471 Query: 476 LSAAQGVLKKLNVE---NRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A V + L+VE R +I +AKG R AG+E F + +++ L P L+ IQ Sbjct: 472 LAQAIDVFQSLDVEWDKTRPQLIGVAKGSDRKAGLETLFFATEDKSIALPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AIT HR+RR K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHNHAITGHRQRRSKVRNTSTLESIEGVGPKRRQMLLKYMGGLQPLRNASVEEIA 591 Query: 591 SIEGISKKIACKIYNHFH 608 + IS +A KIYN Sbjct: 592 KVPTISYALAEKIYNALK 609 >gi|169629868|ref|YP_001703517.1| UvrABC system protein C UvrC [Mycobacterium abscessus ATCC 19977] gi|229558453|sp|B1MC92|UVRC_MYCA9 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|169241835|emb|CAM62863.1| UvrABC system protein C UvrC [Mycobacterium abscessus] Length = 671 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 188/643 (29%), Positives = 313/643 (48%), Gaps = 37/643 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA +L+ R+ SY R M++ ++ +TV Sbjct: 13 SIPVEPGVYRFRDPHGRVIYVGKAKSLRSRLTSYFADITGLHPRTRQMVTTAGSVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE N IK PRFN+ RDDKS+P + +T + P L+ +R YFG Sbjct: 73 GTEVEALQLEYNWIKEFDPRFNVRYRDDKSYPVLAVTLNEEYPRLFVYRGPRRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRT---RPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F R+C++ VF+ RPCLL I++CS PC G +S++++ Sbjct: 133 PYSHAWAIRETLDLLTRVFPARTCSNGVFKRHKQIDRPCLLGYIEKCSAPCIGRVSAQEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E V + FLSG L + R MNQA + ++E A RD ++AL ++ Sbjct: 193 REIVLDFCDFLSGKTDRLARDMEREMNQAAQELNFERAARLRDNISALQRALERQTVVFG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQIL---SYFLRQFY 294 D + ++ A +Q G+ RG + ++ + ++ + FL QFY Sbjct: 253 DGTDADVVAFSDDELEAAVQVFHVRGGRVRGQRGWIVEKTGDPGDSDLQGLVEQFLTQFY 312 Query: 295 TDK--------------PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKI 340 D+ P P +L+ + + G +V + VP++G+K+ + Sbjct: 313 GDQADLVYAADTEADVAPVPREVLVPVLPRDAEGMTSWLTGLRGSRVSLRVPQRGDKKAL 372 Query: 341 IEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAV 396 E NA + Q + L++ L P RIE D SH+ G V Sbjct: 373 AETVERNAKEALAQHKLKRAGDLTTRSAALQELQDALGLEQAPLRIECIDISHVQGTDVV 432 Query: 397 GCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEEN-LNFHPK 454 +VV + ++ YR +++ + DD A + V RRF++ +++++ + + Sbjct: 433 ASLVVFEDGLSRRSDYRHYSIREAAGDGRSDDVASIAEVTRRRFARHVQDQQAVTEYAAE 492 Query: 455 KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK 514 F P++ ++DGG Q++AA L +L V + + +I +AK + E + + Sbjct: 493 GHSRKFAYPPNLFVVDGGAPQVNAAAAELSELGVTD-VAVIGLAKRLE-----EVWVPGE 546 Query: 515 GEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQ 573 + ++L LY +QR+RDEAHRFAIT HR +R + S LD I G+G R+ L+ Sbjct: 547 PDPVILPRTSEALYLLQRVRDEAHRFAITFHRSKRSRRMTASVLDGIPGLGEARRAALVS 606 Query: 574 SFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616 FG+V + ++S E + ++ GI A + + S P+ Sbjct: 607 HFGSVAQLKKASVEEITAVPGIGAATAVAVREALIETDSSAPS 649 >gi|161760580|ref|YP_070262.2| excinuclease ABC subunit C [Yersinia pseudotuberculosis IP 32953] gi|186895180|ref|YP_001872292.1| excinuclease ABC subunit C [Yersinia pseudotuberculosis PB1/+] gi|186698206|gb|ACC88835.1| excinuclease ABC, C subunit [Yersinia pseudotuberculosis PB1/+] Length = 617 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 215/618 (34%), Positives = 336/618 (54%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D AG V+YVGKA +L+KR+ SY + + ++ I I TV Sbjct: 18 LKTVTSQPGVYRMYDTAGTVIYVGKAKDLKKRLTSYFRAQVANRKTETLVKNIAQIDVTV 77 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P I ++ P L HR + +G YF Sbjct: 78 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPLIFLSADE-HPRLAVHRGAKHEKGEYF 136 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RCSGPC +S E+Y Sbjct: 137 GPFPNSYAVRETLALLQKLFPVRQCENSVYRNRSRPCLQYQIGRCSGPCVEGLVSEEEYQ 196 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 V + FLSG + + ++ M +A+ + +E A RD++ A+ + + Sbjct: 197 RQVDYVRLFLSGKDQQVLTQLITRMEEASQQLHFEDAARIRDQIQAVRRVTEQQFVSGDS 256 Query: 242 M--DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295 D + + LAC+ F G+ G+ ++F K + + ++++ F+ QFY Sbjct: 257 EDLDVIGVAFDAGLACVHVLFIRLGKVLGSRSYFPKVPAGTELSEVVQTFVGQFYLQGSQ 316 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL E LL S + G K++I +G++ + ++ A NA + + Sbjct: 317 GRTLPGEILLDFTLTEKDLLASSLSELAGRKIQIQSRPRGDRARYLKLARTNASTALITR 376 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + +K+ K L R+E +D SH MG V VV NG V+++YR++ Sbjct: 377 LSQQSTIHQRMKELAKVLKLD-EINRMECFDISHTMGEQTVASCVVFDANGPVRSEYRRY 435 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + + DD A M VL+RR+ + + +++ PDV+ +DGGKGQ Sbjct: 436 NI--SGITPGDDYAAMAQVLKRRYGKALDDQK---------------IPDVIFIDGGKGQ 478 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 LS A V LNV + + ++ +AKG R AG+E F+ +GE L P L+ IQ Sbjct: 479 LSQAFDVFASLNVPWDKQKPLLVGVAKGSDRKAGLETLFLASEGEGFSLPPDSPALHLIQ 538 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RD++H AIT HR+RR K S L+ I G+GP R++ LL+ G ++ + +S E +A Sbjct: 539 HIRDDSHNHAITGHRQRRSKVKNTSALEMIEGVGPKRRQALLKYMGGLQPLFNASVEEIA 598 Query: 591 SIEGISKKIACKIYNHFH 608 + GIS+ +A KI+N Sbjct: 599 KVPGISQALAEKIHNALK 616 >gi|254468782|ref|ZP_05082188.1| excinuclease ABC, C subunit [beta proteobacterium KB13] gi|207087592|gb|EDZ64875.1| excinuclease ABC, C subunit [beta proteobacterium KB13] Length = 598 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 226/610 (37%), Positives = 333/610 (54%), Gaps = 25/610 (4%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +P PG+Y+M+D +V+YVGKA NL+KR+ SY + N + R MIS I +I++TVT Sbjct: 9 KTLPTHPGIYRMVDAKDKVIYVGKAKNLKKRVASYFNKNIPSPRTRLMISHIQSIQYTVT 68 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EAL+LE N+IK L PR+N++ RDDKS+PY+++T H P L HR YFG Sbjct: 69 NTEAEALILENNLIKELMPRYNVIFRDDKSYPYLMMT-SHAFPMLKFHRGVQKKGNKYFG 127 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PF + +AV ++I LQ+ F LR+C DS F +R RPCL QIKRC+ PC I + Y E Sbjct: 128 PFPNSNAVRESIQLLQKVFLLRNCDDSTFNNRVRPCLQHQIKRCTAPCVKLIDQKSYAED 187 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---N 240 +A+ FL G ++ + E++ +MN A E+YE A + RDR+ +L ++ N Sbjct: 188 CRQAELFLQGKDNEVVEQMTEHMNIAAENEEYERAAVFRDRIQSLRQVRLKQFVSDFSEN 247 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D +L + CI G++ G TFF K S+ + + FL Q Y ++ P Sbjct: 248 DADIIALAEESGMVCINLVMIRGGRHLGDKTFFPKNASD-SESNFTEIFLCQHYDEQIPP 306 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 I+ ++ + K K KI G+KR ++ A NA + QK E Sbjct: 307 PVIVTEGIFDKDLVNSFFKLKFPDKKFKIISKATGDKRMWLKMAKRNAMINVRQKNLLES 366 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 ++ K +P + RIE +D SH MG + VV + G +YR+FN++ Sbjct: 367 GKADKIESLRKLLNMPDLN-RIECFDISHTMGNQTIASCVVYDDLGMQNKEYRRFNIND- 424 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 + DD A M VLERR ++I E+ + PD++++DGGKGQL A Sbjct: 425 -ITPGDDYAAMYQVLERRVKRIINEEQ--------------TKPDMMLIDGGKGQLKMAL 469 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALV-LNMRDPILYFIQRLRDEAHR 539 V K NV I ++SIAKG R +G+E + GE L + + + +Q +RDEAHR Sbjct: 470 EVFDKYNVVG-IRLVSIAKGEGRKSGLESLILDDGEVLSDIPKNNIGFHLMQHIRDEAHR 528 Query: 540 FAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAIT HR++R K S L+EI GIGP +++ LL FG + I +S E L+ + GI +K Sbjct: 529 FAITGHRQKRAKTNLSSSLEEIEGIGPKKRKALLVYFGGLDGIRNASVEELSQVTGIDQK 588 Query: 599 IACKIYNHFH 608 +A +YN +H Sbjct: 589 LAEIVYNFYH 598 >gi|297195043|ref|ZP_06912441.1| UvrABC system protein C [Streptomyces pristinaespiralis ATCC 25486] gi|197721566|gb|EDY65474.1| UvrABC system protein C [Streptomyces pristinaespiralis ATCC 25486] Length = 688 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 185/641 (28%), Positives = 314/641 (48%), Gaps = 35/641 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 Q+P+ PGVY+ D RV+YVGKA +L++R+ SY N R M++ ++ + Sbjct: 37 KPGQIPDSPGVYRFRDEHRRVIYVGKAKSLRQRLASYFQDLANLHPRTRTMVTTAASVEW 96 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TEVEAL LE + IK PRFN+ RDDKS+PY+ +T + P + R + Sbjct: 97 TVVSTEVEALQLEYSWIKEYDPRFNVKYRDDKSYPYLAVTLNEEFPRVQVMRGAKRKGVR 156 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISS 177 YFGP+ A+ +T++ + R F +R+C+ VFR+ + RPCLL I +CS PC G ++ Sbjct: 157 YFGPYGHAWAIRETVDLMLRVFPVRTCSAGVFRNHVQKGRPCLLGYIGKCSAPCVGRVTP 216 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E++ E E F++G ++ + M A + +YE A RD + AL N Sbjct: 217 EEHRELAEEFCDFMAGRTGTYIRRLEKQMMAAAEEMEYEKAARLRDDIGALKRALEKNAV 276 Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D +L ++ A +Q G+ RG + A ++ + L+Q Y Sbjct: 277 VLADATDADLIALAEDELEAAVQIFHVRGGRVRGQRGWVTDKVENVDTAGLVEHALQQLY 336 Query: 295 TDKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 ++ P+ +L+ E+T + + G V + VP++G+K+ ++E NA ++ Sbjct: 337 GEESGDAVPKEVLVPALPEDTGAVTEWLTGRRGAAVSLRVPQRGDKKALMETVERNALQA 396 Query: 352 HTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 + S L++ + L P RIE +D SH+ G V MVV + Sbjct: 397 LGLHKTKRASDLTTRSRALEEIAEALGLDSAPLRIECFDISHLQGEDVVASMVVFEDGLA 456 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNF------------HPKK 455 K++YR+F + + QDD M V+ RRF + + ++ Sbjct: 457 RKSEYRRFQIKG--FEGQDDVRSMHEVITRRFKRYLAEKDRTGEWIGGDDPVHEALEDDG 514 Query: 456 QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG 515 + F P +V++DGG+ Q++AA+ L +L +++ + + +AK + E + + Sbjct: 515 RPKKFAYPPQLVVVDGGQPQVAAAKRALDELGIDD-VAVCGLAKRLE-----EVWLPHED 568 Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQS 574 + +VL LY +QR+RD AH FAI R +R K SPLD + G+G RK+ L++ Sbjct: 569 DPVVLPRSSEGLYLLQRVRDTAHDFAIRYQRSKRSKRIRTSPLDAVPGLGETRKQALIKH 628 Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615 FG+VK + +++ E + + G+ +K A + + P Sbjct: 629 FGSVKRLRQATIEQICEVPGMGRKTAESVVVALAQTAPPAP 669 >gi|197285380|ref|YP_002151252.1| excinuclease ABC subunit C [Proteus mirabilis HI4320] gi|227355814|ref|ZP_03840207.1| exinuclease UvrC [Proteus mirabilis ATCC 29906] gi|229558455|sp|B4EXV4|UVRC_PROMH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|194682867|emb|CAR43195.1| UvrABC system protein C (excinuclease ABC subunit C) [Proteus mirabilis HI4320] gi|227164133|gb|EEI49030.1| exinuclease UvrC [Proteus mirabilis ATCC 29906] Length = 610 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 211/616 (34%), Positives = 339/616 (55%), Gaps = 31/616 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++ PGVY+M D +G V+YVGKA +L+KR+ SY + ++ + ++ I NI TVT Sbjct: 13 RVTSQPGVYRMYDASGTVIYVGKAKDLKKRLSSYFRAQVNSRKTEALVKCIANIDVTVTH 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLE + I+R +PR+N+LLRDDKS+PYI ++ K P L +R + +G YFGP Sbjct: 73 TETEALLLEHSYIQRYQPRYNVLLRDDKSYPYIYLS-ADKHPRLASYRGAKHAKGEYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183 F + AV +T+ +Q+ F +R C DSV+R+R+RPCL +QI RC PC +S E+Y + Sbjct: 132 FPNSLAVRETLALMQKLFPIRQCEDSVYRNRSRPCLQYQIGRCLAPCVKGYVSDEEYAQQ 191 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NR 241 V+ + FLSG + + E + + M +A+ +E A RD++ A+ + + Sbjct: 192 VNYVRLFLSGDDSQVIEGLIKRMEEASQALRFEEAARIRDQIHAVRQVTEKQFVANIGDD 251 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----K 297 +D S+ N +AC+ FF G+ G+ ++F K + ++ +++ F+ QFY + Sbjct: 252 LDVISVAFNGAIACVYVLFFRQGKVLGSRSYFPKVPANTSLDEVVQTFIGQFYLQGSAIR 311 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P ILL E+ ++L S G K+ I +G++ + ++ A NA + K Sbjct: 312 TLPTEILLDFNLEDKTILAESISSIAGRKIHIQTKPRGDRARYLKLARTNAATALATKQV 371 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + + + I R+E +D SH MG V VV NG +K++YR++N+ Sbjct: 372 EQSTISQRYNSLMSLLEMKEIK-RMECFDISHTMGEQTVASCVVFDMNGPLKSEYRRYNI 430 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + + DD A M VL RR+ + ++ + PD++ +DGGKGQL+ Sbjct: 431 --SGITPGDDYAAMNQVLTRRYGKSLEESK---------------IPDIIFIDGGKGQLA 473 Query: 478 AAQGVLKKLNVE---NRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRL 533 A V + L+V+ + +I +AKG R AG+E F +GE + L P L+ IQ + Sbjct: 474 QAIDVFQSLDVDWDKSHPKLIGVAKGSDRKAGLETLFFKPEGEGVALPSDSPALHLIQHI 533 Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDE+HR AIT HR+RR K S L+ I G+GP R+++LL+ G ++ + +S E +A + Sbjct: 534 RDESHRHAITGHRQRRAKVKNTSSLESIEGVGPKRRQMLLKYMGGLQALRDASVEEIAKV 593 Query: 593 EGISKKIACKIYNHFH 608 IS +A KI+N Sbjct: 594 PTISTALAEKIFNALK 609 >gi|85373328|ref|YP_457390.1| excinuclease ABC subunit C [Erythrobacter litoralis HTCC2594] gi|84786411|gb|ABC62593.1| excinuclease complex nuclease subunit [Erythrobacter litoralis HTCC2594] Length = 696 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 260/646 (40%), Positives = 364/646 (56%), Gaps = 49/646 (7%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+MLD G VLYVGKA +L+ R+ +Y +N + R+ M+SQ + T +E E Sbjct: 51 KPGVYRMLDARGDVLYVGKARSLKARVANYTQVSNLSGRLQRMVSQTRGMEIVTTNSEAE 110 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLEA +IKR +P FN+LLRDDKSFP+IL+ H P + KHR + +G+Y+GPFAS Sbjct: 111 ALLLEAQLIKRYRPPFNVLLRDDKSFPFILLRADHDFPRIMKHRGARRAKGNYYGPFASA 170 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 +V TIN+LQ+ F LRSC DS F +R RPCLL+QIKRCS PC G I E Y E V EAK Sbjct: 171 GSVNTTINALQKLFLLRSCTDSFFSNRDRPCLLYQIKRCSAPCVGRIDEEGYAELVREAK 230 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNRMDCF 245 FL G + ++ KI R M +A D+E+A I RDRL A + IQ D F Sbjct: 231 DFLGGKSDAVQRKIERQMARAAEDLDFETAAILRDRLRAATFIQGSQAINASGVGDADVF 290 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILL 305 +L H +Q F GQN G FF + Q+LS + QFY + P P +L+ Sbjct: 291 ALAHKNGQIAVQAFFIRGGQNWGHRAFFPTHTKDVEEPQVLSNVILQFYEEVPPPPTVLV 350 Query: 306 SEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365 E E+ L+E + + G KV++++P++G++RK+++QA NA + ++L+ + + Sbjct: 351 DRELPESELIEAALSELAGKKVQLSIPQRGDRRKLMQQASRNATEALDRRLAERGTQAKL 410 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 ++ + L P+RIE+YDNSHI G AVG MVV G GF+KNQYRKFN+ + Sbjct: 411 NRELAEFLELDAPPERIEVYDNSHIQGAKAVGAMVVAGPEGFIKNQYRKFNIREAQ--SN 468 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFH--------------------------------- 452 DD MMR V+ RRF +L + E Sbjct: 469 DDFGMMREVMRRRFRKLAEGEGPYEEDLSTRARTASSAAARDERDGAADTVRPEQRSSEA 528 Query: 453 --------PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR- 503 K++ WPD+V++DGGKGQ+S+ + L ++ +E+ + +++IAKGP Sbjct: 529 KRSRERGSRGKKDTHETIWPDLVLIDGGKGQMSSVRDTLAEMGIED-VPLVAIAKGPDHG 587 Query: 504 SAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEING 562 G E F G L + P+L+ +QRLRDE HR+AI HR +R +A SPLDEI G Sbjct: 588 REGREVFHFPDGREKTLPVNSPLLFHLQRLRDEVHRYAIGAHRAKRSRAITASPLDEIPG 647 Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 IGP RKR LL FGT + ++ E L G+S +A K+Y+ +H Sbjct: 648 IGPARKRALLLHFGTASKVRAAALEDLQRAPGVSNAVARKVYDFYH 693 >gi|332161394|ref|YP_004297971.1| excinuclease ABC subunit C [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318605329|emb|CBY26827.1| excinuclease ABC subunit C [Yersinia enterocolitica subsp. palearctica Y11] gi|325665624|gb|ADZ42268.1| excinuclease ABC subunit C [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 610 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 216/618 (34%), Positives = 338/618 (54%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D AG V+YVGKA +L+KR+ SY ++ + + ++ I I TV Sbjct: 11 LKTVTSQPGVYRMYDKAGTVIYVGKAKDLKKRLTSYFRAHVASRKTETLVKNIAQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P I ++ K P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPLIFLS-ADKHPRLAIHRGAKHEKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RCSGPC +S E+Y Sbjct: 130 GPFPNSYAVRETLALLQKLFPVRQCENSVYRNRSRPCLQYQIGRCSGPCVPGLVSEEEYQ 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 V + FLSG + + ++ M +A+ +E A RD++ A+ + + Sbjct: 190 RQVDYVRLFLSGKDQQVLTQLISRMEEASRSLHFEDAARIRDQIQAVRRVTEQQFVSGDS 249 Query: 242 M--DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 D + + LAC+ F G+ G+ ++F K + + ++++ F+ QFY Sbjct: 250 EDLDVIGVAFDAGLACVHVLFIRQGKVLGSRSYFPKVPAGTELSEVVQTFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL E LL S + G K++I +G++ + ++ A NA + + Sbjct: 310 VRTLPGEILLDFTLAEKDLLASSLSELAGRKIQIQSRPRGDRARYLKLARTNASTALVTR 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + +K+ K L R+E +D SH MG V VV NG V+++YR++ Sbjct: 370 LSQQSTIHQRMKELAKILNLD-EINRMECFDISHTMGEQTVASCVVFDANGPVRSEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + + DD A M VL+RR+ + + +++ PDV+ +DGGKGQ Sbjct: 429 NI--SGITPGDDYAAMSQVLKRRYGKALDDKK---------------IPDVIFIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 LS A V LNV + + ++ +AKG R AG+E F+ +GE L P L+ IQ Sbjct: 472 LSQAFDVFASLNVPWDKQKPLLVGVAKGSDRKAGLETLFLAAEGEGFSLPPDSPALHLIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RD++H AIT HR+RR K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDDSHNHAITGHRQRRSKVKNTSALELIEGVGPKRRQILLKYMGGLQPLLNASVEEIA 591 Query: 591 SIEGISKKIACKIYNHFH 608 + IS+ +A KIYN Sbjct: 592 KVPSISQALAEKIYNALK 609 >gi|149366188|ref|ZP_01888223.1| excinuclease ABC subunit C [Yersinia pestis CA88-4125] gi|153949922|ref|YP_001401221.1| excinuclease ABC subunit C [Yersinia pseudotuberculosis IP 31758] gi|167401139|ref|ZP_02306642.1| UvrABC system, C protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|229896315|ref|ZP_04511485.1| excinuclease ABC subunit C [Yersinia pestis Pestoides A] gi|229897252|ref|ZP_04512408.1| excinuclease ABC subunit C [Yersinia pestis biovar Orientalis str. PEXU2] gi|229897980|ref|ZP_04513131.1| excinuclease ABC subunit C [Yersinia pestis biovar Orientalis str. India 195] gi|229902790|ref|ZP_04517907.1| excinuclease ABC subunit C [Yersinia pestis Nepal516] gi|21264113|sp|Q8ZF52|UVRC_YERPE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|119367862|sp|Q1C8L1|UVRC_YERPA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|119367863|sp|Q1CHE4|UVRC_YERPN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|189038131|sp|A7FIZ3|UVRC_YERP3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|115347596|emb|CAL20506.1| excinuclease ABC subunit C [Yersinia pestis CO92] gi|149292601|gb|EDM42675.1| excinuclease ABC subunit C [Yersinia pestis CA88-4125] gi|152961417|gb|ABS48878.1| UvrABC system, C protein [Yersinia pseudotuberculosis IP 31758] gi|167049528|gb|EDR60936.1| UvrABC system, C protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|229680237|gb|EEO76336.1| excinuclease ABC subunit C [Yersinia pestis Nepal516] gi|229689021|gb|EEO81086.1| excinuclease ABC subunit C [Yersinia pestis biovar Orientalis str. India 195] gi|229693589|gb|EEO83638.1| excinuclease ABC subunit C [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701238|gb|EEO89267.1| excinuclease ABC subunit C [Yersinia pestis Pestoides A] gi|320015392|gb|ADV98963.1| excinuclease ABC subunit C [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 610 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 215/618 (34%), Positives = 337/618 (54%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D AG V+YVGKA +L+KR+ SY + + ++ I I TV Sbjct: 11 LKTVTSQPGVYRMYDTAGTVIYVGKAKDLKKRLTSYFRAQVANRKTETLVKNIAQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPLIFLSADE-HPRLAVHRGAKHEKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RCSGPC +S E+Y Sbjct: 130 GPFPNSYAVRETLALLQKLFPVRQCENSVYRNRSRPCLQYQIGRCSGPCVEGLVSEEEYQ 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 V + FLSG + + ++ M +A+ + +E A RD++ A+ + + Sbjct: 190 RQVDYVRLFLSGKDQQVLTQLITRMEEASQQLHFEDAARIRDQIQAVRRVTEQQFVSGDS 249 Query: 242 M--DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295 D + + LAC+ F G+ G+ ++F K + + ++++ F+ QFY Sbjct: 250 EDLDVIGVAFDAGLACVHVLFIRLGKVLGSRSYFPKVPAGTELSEVVQTFVGQFYLQGSQ 309 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL E LL S + G K++I +G++ + ++ A NA + + Sbjct: 310 GRTLPGEILLDFTLTEKDLLASSLSELAGRKIQIQSRPRGDRARYLKLARTNASTALITR 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + +K+ K L R+E +D SH MG V VV NG V+++YR++ Sbjct: 370 LSQQSTIHQRMKELAKVLKLD-EINRMECFDISHTMGEQTVASCVVFDANGPVRSEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + + DD A M VL+RR+ + + +++ PDV+ +DGGKGQ Sbjct: 429 NI--SGITPGDDYAAMAQVLKRRYGKALDDQK---------------IPDVIFIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 LS A V LNV + + ++ +AKG R AG+E F+ +GE L P L+ IQ Sbjct: 472 LSQAFDVFASLNVPWDKQKPLLVGVAKGSDRKAGLETLFLASEGEGFSLPPDSPALHLIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RD++H AIT HR+RR K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDDSHNHAITGHRQRRSKVKNTSALEMIEGVGPKRRQVLLKYMGGLQPLFNASVEEIA 591 Query: 591 SIEGISKKIACKIYNHFH 608 + GIS+ +A KI+N Sbjct: 592 KVPGISQALAEKIHNALK 609 >gi|119774745|ref|YP_927485.1| excinuclease ABC subunit C [Shewanella amazonensis SB2B] gi|119767245|gb|ABL99815.1| Excinuclease ABC subunit C [Shewanella amazonensis SB2B] Length = 606 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 206/616 (33%), Positives = 325/616 (52%), Gaps = 28/616 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + GVY+M D A V+YVGKA +L+KR+ SY +N + ++S I NI T+ Sbjct: 8 LKTVSSASGVYRMYDAAAEVIYVGKAKDLKKRLSSYFRTNLPNIKTQALVSNIANIDVTL 67 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE + IK+ P++N+LLRDDKS+PYIL++ HK P L HR + +G YF Sbjct: 68 THSETEALILENDYIKQYMPKYNVLLRDDKSYPYILLS-GHKHPRLAYHRGAQREKGEYF 126 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + AV +++N +Q+ F +R C D+ +R R+RPCL +QI RCS PC G+IS E Y E Sbjct: 127 GPYPNGGAVRESLNLMQKLFPIRQCEDAYYRARSRPCLQYQIGRCSAPCVGKISDEDYDE 186 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYN 240 V A FL G + + + M A L +YE+A +RD++ AL + + Sbjct: 187 QVRLATLFLRGKDQQVIASLVGKMEAAALAMEYEAAARYRDQIQALRKVAEQQNVSGQQG 246 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-- 298 MD + + +AC F G+ G+ ++F + ++L F+ QFY Sbjct: 247 DMDVIGVNYASGIACFHILFIREGKIFGSRSYFPAVPDATELGEVLRAFMLQFYLGNEAH 306 Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P+ +LL EE E+ LE + G++++I + ++ + A NA + KL Sbjct: 307 RSIPKEVLLGEEFEDLHELEAAMQDSLGHRLEIKTKVRADRAAFLRLANTNAANAVVTKL 366 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + + + + ++ + L +R+E +D SH MG S V VV G K +YR++N Sbjct: 367 AHKSTVEQRMELLEEVLGLGAPIQRMECFDISHTMGESTVASCVVFNREGPNKGEYRRYN 426 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + + DD A M L RRF ++ PDV+ +DGG GQL Sbjct: 427 I--SGITGGDDYAAMAQALSRRFDKI---------------ERTGKVPDVLFIDGGLGQL 469 Query: 477 SAAQGVLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRL 533 AA ++ ++ + ++ +AKG R G+E E L +P L+ IQ + Sbjct: 470 RAAMTIVNDKFAELDRQPLLVGVAKGESRKPGLETLIFGGSEAEFSLESDNPALHLIQHI 529 Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDE+HRFAIT HR +R++ S L+ I GIGP R++ LLQ G ++ + +S LA + Sbjct: 530 RDESHRFAITGHRAKRQQTRNTSTLESIPGIGPKRRKALLQYLGGLQQVKNASVAELAKV 589 Query: 593 EGISKKIACKIYNHFH 608 GIS ++A I++ Sbjct: 590 PGISAEMAQTIHDALR 605 >gi|163741903|ref|ZP_02149293.1| excinuclease ABC subunit C [Phaeobacter gallaeciensis 2.10] gi|161385076|gb|EDQ09455.1| excinuclease ABC subunit C [Phaeobacter gallaeciensis 2.10] Length = 581 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 251/589 (42%), Positives = 368/589 (62%), Gaps = 15/589 (2%) Query: 24 YVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLKPR 83 YVGKA NL+ R+ +Y H+ RI MI+ ++ F T TE EALLLE N+IK+LKP+ Sbjct: 1 YVGKARNLRARVSNY-SRPGHSPRIERMIAATASMMFLTTRTETEALLLEQNLIKQLKPK 59 Query: 84 FNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFF 143 +N+LLRDDKSFP IL+ H P + KHR + +GSYFGPFAS AV +T+N LQ+ F Sbjct: 60 YNVLLRDDKSFPNILVAKDHAFPQIKKHRGTRREKGSYFGPFASAGAVNRTLNQLQKAFL 119 Query: 144 LRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIA 203 LR+C +++F RTRPCL +QIKRC+ PCTGEIS+E Y V +A++FLSG + ++E++A Sbjct: 120 LRNCTNAMFESRTRPCLQYQIKRCTAPCTGEISAEDYASSVRDAERFLSGRSTKIQEELA 179 Query: 204 RNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHNKNLACIQTCF 260 M A+ ++E A RDR+ AL+ +Q D L+ + AC+Q F Sbjct: 180 EQMAAASEAMEFERAAALRDRIKALTQVQTSQGINPRGVAEADVIGLHLDSGQACVQVFF 239 Query: 261 FHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFF 320 QN G F+ + + + + A+++ F+ QFY +K P ++LS+E E L+E + Sbjct: 240 IRANQNWGNQDFYPRINGDVSPAEVMEAFIGQFYDNKEPPRQLILSDEIENGDLMEQALS 299 Query: 321 KQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPK 380 + G +V+I VP++GEK +++ A+ NA S ++++ + +L+ + F L P+ Sbjct: 300 DKAGRRVEILVPQRGEKTELVAGAVRNARESLARRMAESATQAKLLRGVAEAFGLEGPPQ 359 Query: 381 RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFS 440 RIE+YDNSHI G AVG M+V G GF+KN YRKFN+ +D+ DD MM+ VL RRFS Sbjct: 360 RIEVYDNSHIQGSHAVGGMIVAGPEGFMKNAYRKFNIRGDDLTPGDDFGMMKEVLNRRFS 419 Query: 441 QLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500 +L+K + + WPD++++DGG GQ+SA ++ + V++ I +I +AKG Sbjct: 420 RLLKED---------PDREKGLWPDLLLIDGGAGQVSAVAEIMAEHGVQD-IPMIGVAKG 469 Query: 501 PKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDE 559 R G E+F A L DP+LYF+QR+RDEAHRFAI THR +R KA +PLDE Sbjct: 470 VDRDHGKEEFHRLGAPAFALQRNDPVLYFVQRMRDEAHRFAIGTHRAKRAKAMGATPLDE 529 Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 + G+G RKR LL FG+ K +SR++ L ++EG+S +A +IY+ FH Sbjct: 530 VPGVGAARKRALLAHFGSAKAVSRANLSDLKAVEGVSAALAQRIYDFFH 578 >gi|157370091|ref|YP_001478080.1| excinuclease ABC subunit C [Serratia proteamaculans 568] gi|189038087|sp|A8GCW2|UVRC_SERP5 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|157321855|gb|ABV40952.1| excinuclease ABC, C subunit [Serratia proteamaculans 568] Length = 610 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 218/616 (35%), Positives = 336/616 (54%), Gaps = 31/616 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY+M D G V+YVGKA +L+KR+ SY + + ++ I I TVT Sbjct: 13 TVTSQPGVYRMYDATGTVIYVGKAKDLKKRLASYFRQQVGSRKTETLVKNIAQIDVTVTH 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLE N IK +PR+N+LLRDDKS+P I ++ P L HR + +G YFGP Sbjct: 73 TETEALLLEHNYIKLYQPRYNVLLRDDKSYPLIFLS-ADSHPRLAVHRGAKHAKGEYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEF 183 F + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S ++Y + Sbjct: 132 FPNSYAVRETLALLQKLFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEDEYRQQ 191 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYNR 241 V + FLSG + + ++ M A+ ++E A RD++ A+ + + Sbjct: 192 VDYVRLFLSGKDQQVLHQLIERMENASKALNFEEAARIRDQIQAVRRVTERQFVSGNSDD 251 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----K 297 +D + +AC+ F G+ G+ ++F K + ++++ F+ QFY + Sbjct: 252 LDVIGVAFEAGMACLHVLFIRQGKVLGSRSYFPKVPGGTEMSEVVQTFVGQFYLQGSQMR 311 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P ILL E LL S + G K++I +G++ + ++ A NA + T KLS Sbjct: 312 TLPAEILLDFTLPEKELLAESLSELAGRKIQIQSKPRGDRARYLKLARTNAATALTTKLS 371 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + + L + TK L R+E +D SH MG V VV NG ++++YR++N+ Sbjct: 372 QQSTIHQRLAELTKVLNLS-EINRMECFDISHTMGEQTVASCVVFDANGPLRSEYRRYNI 430 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + DD A M VL+RR+ + ++ ++ PDV+ +DGGKGQL Sbjct: 431 --TGITPGDDYAAMAQVLKRRYGKALEEKK---------------IPDVIFIDGGKGQLG 473 Query: 478 AAQGVLKKLNV---ENRITIISIAKGPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQRL 533 A V LNV +N+ +I IAKG R AG+E FFV +GE + L P L+ IQ + Sbjct: 474 MAIDVFNSLNVSWDKNKPLLIGIAKGADRKAGLETLFFVPEGEGIALPSDSPALHVIQHI 533 Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RD++H AIT HR+RR K S L+ I+G+GP R+++LL+ G ++ + +S E +A + Sbjct: 534 RDDSHNHAITGHRQRRAKVRNTSALELIDGVGPKRRQVLLKYMGGLQPLLNASVEEIAKV 593 Query: 593 EGISKKIACKIYNHFH 608 GIS+ +A KIYN Sbjct: 594 PGISQALAEKIYNALK 609 >gi|238920172|ref|YP_002933687.1| excinuclease ABC subunit C [Edwardsiella ictaluri 93-146] gi|259710339|sp|C5BH21|UVRC_EDWI9 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|238869741|gb|ACR69452.1| excinuclease ABC subunit C, putative [Edwardsiella ictaluri 93-146] Length = 610 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 212/619 (34%), Positives = 329/619 (53%), Gaps = 31/619 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D V+YVGKA +L+KR+ SY + + ++ QI I TV Sbjct: 11 LKTVTNQPGVYRMYDAGAEVIYVGKAKDLKKRLSSYFRCQLASRKTEALVRQIAQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IKR +PR+N+LLRDDKS+P I ++ + P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKRYQPRYNVLLRDDKSYPLIFLS-ADRHPRLAVHRGARRARGDYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + +AV +T+ LQ+ F +R C DSV+R+R+RPCL +QI+RC GPC ++ +Y Sbjct: 130 GPFPNANAVRETLALLQKLFPIRQCEDSVYRNRSRPCLQYQIQRCLGPCVTGLVNDGEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 V + FLSG + + + + M +A+ +E A RD++ A+ + + Sbjct: 190 RQVEYVRLFLSGKDSQVIDALVARMEEASRALRFEEAARLRDQIQAVRRVTERQFISGDH 249 Query: 242 MDC--FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 D + +ACI F GQ G+ ++F + + +T A++L F+ QFY Sbjct: 250 EDIDVIGVAFEAGMACIHVLFIRHGQVLGSRSYFPRVPAGTTLAEVLQTFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P IL+ + LL S + G ++ I +G++ + ++ A NA + K Sbjct: 310 IRTLPGEILIDFLLPDRKLLADSISELAGRRIPIQSQPRGDRARYLKLARTNAVTALNSK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L + +R+E +D SH MG V VV NG ++++YR++ Sbjct: 370 LSQQSTILQRLVQLEQVLQ-RADIQRMECFDISHTMGEETVASCVVFDRNGPLRSEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + + E+ PD++ +DGGKGQ Sbjct: 429 NIKG--ITPGDDYAAMDQVLRRRYDKALNEEK---------------IPDIIFIDGGKGQ 471 Query: 476 LSAAQGVLKKLNVE---NRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQ 531 L A+ V +L V +R ++ IAKG R AG+E F + +GE L P L+ IQ Sbjct: 472 LGQAKQVFAELEVPWDTHRPLLLGIAKGSDRKAGLETLFFEAQGEGFSLPPDSPALHLIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRKRR K S L+ I GIGP R++LLL+ G ++ + +S + +A Sbjct: 532 HIRDESHNHAIAGHRKRRAKVRSTSALESIEGIGPKRRQLLLKYMGGMQPLRDASIDEIA 591 Query: 591 SIEGISKKIACKIYNHFHK 609 + GIS +A KI+ + Sbjct: 592 KVPGISAALAEKIHYALKQ 610 >gi|52842851|ref|YP_096650.1| excinuclease ABC subunit C [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|81376716|sp|Q5ZS74|UVRC_LEGPH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|52629962|gb|AAU28703.1| excinuclease ABC subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 618 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 219/621 (35%), Positives = 339/621 (54%), Gaps = 34/621 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P PG+Y+MLD G VLYVGKA NL+KR+ SY N + ++SQI +I +VT Sbjct: 16 KLPSEPGIYRMLDEEGTVLYVGKAANLKKRVNSYFSKQNTGVKTRALVSQIKSIEISVTR 75 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFG 123 +E EALLLE+N+IK L+P++N+LLRDDKS+PYI +++ P + +R G++FG Sbjct: 76 SETEALLLESNLIKALRPKYNVLLRDDKSYPYIHLSNHPDFPRIELYRSKKKPPSGNFFG 135 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ V AV +TI ++Q+ F +R+C DS F+ R+RPCL +QIKRC+ PC IS E Y Sbjct: 136 PYPGVAAVRETIVTIQKIFKIRNCRDSYFKARSRPCLQYQIKRCTAPCVHYISPENYKLS 195 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NR 241 V +A +FL G + +++A M QA + ++E A + RD++ L IQ + Sbjct: 196 VEDAIRFLQGKCQIILDELAERMKQAVSQLNFEEAAVLRDQIKNLRLIQEQQGVVQLRGD 255 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ---------ILSYFLRQ 292 D ++ ACIQ GQ + +FF + + F+ Sbjct: 256 ADVIAIEVRPGFACIQCVTIREGQVLNSQSFFPTVPYAVLDEELDANSLWQQTFEAFIGF 315 Query: 293 FYTDKP--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR 350 +Y D P+ I+ ++ E+ LE ++ G KI + +G K + ++ A+ N Sbjct: 316 YYLDTSERIPDLIITNQSITESRSLEYILSQRRGKSCKIQINPRGVKSRWMDFAVNNLRI 375 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 S + +S + + + + AL +R+E +D SH G + V VV G + Sbjct: 376 SVAEYVSKHSTIRSRYQALKQLLALDKNIERMECFDISHTQGEATVASCVVFDTEGPRPS 435 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 +YR+FN+ + DD A M + RRF +LI PDV+I+D Sbjct: 436 EYRRFNIEG--ITPGDDYAAMEQAVTRRFKRLID---------------VQLLPDVLIID 478 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYF 529 GGKGQ+S + VL L VE+ IT++ ++KGP R AG EK V + VL L+ Sbjct: 479 GGKGQVSIVKRVLTSLGVED-ITLLGVSKGPSRKAGWEKLILVNENREFVLPEDSKALHL 537 Query: 530 IQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 +Q +RDEAHRFAIT HRK+R+K S L+ I G+G R++ LLQ FG ++ ++++ E Sbjct: 538 LQHIRDEAHRFAITAHRKKRQKTRVESTLESIEGVGAKRRQALLQRFGGLRELAKAPLEE 597 Query: 589 LASIEGISKKIACKIYNHFHK 609 + ++GIS+++A +IY HFH Sbjct: 598 ICKVQGISEQLAKRIYEHFHP 618 >gi|261856390|ref|YP_003263673.1| excinuclease ABC, C subunit [Halothiobacillus neapolitanus c2] gi|261836859|gb|ACX96626.1| excinuclease ABC, C subunit [Halothiobacillus neapolitanus c2] Length = 657 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 217/623 (34%), Positives = 333/623 (53%), Gaps = 32/623 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + E PG+Y+M +LY+GKA NL+ R+ SY + ++ QI I T Sbjct: 23 LKSVTERPGIYRMYGEDDVILYIGKARNLKARLSSYFRG-QQAIKTQALVRQIVRIEITA 81 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE+N+IK +PR+NILLRDDKS+P+I ++ P L HR + +G YF Sbjct: 82 TQTEAEALLLESNLIKAHRPRYNILLRDDKSYPWIYVSTDQDYPRLAYHRGARKRKGCYF 141 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+++ AV +T+N L++ F +R C DSVFR+R+RPCL +QI RC+ PC G IS E Y + Sbjct: 142 GPYSAPSAVRETLNLLEKVFKVRQCEDSVFRNRSRPCLQYQIGRCTAPCVGFISPEAYRQ 201 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YN 240 V + FLSG + L E++A M QA D+E A RD+++ L + Sbjct: 202 DVDDTMAFLSGRSQILTEQLAERMAQAAAALDFEQAAQLRDQISQLRVVAQQQSITGVNG 261 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D +L NL + G++ GT ++F + +++ A+ ++ F+ Q+Y ++ P Sbjct: 262 DADVIALIMVMNLTVVAVSTIRDGRHLGTRSYFPQVPADTEPAETMAGFISQYYAEREAP 321 Query: 301 ENILLSEEAEETSLLEISFFK----QYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 +L S ++ + L Q G +V T P++G+ R+ +EQ NA + ++L Sbjct: 322 VRVLCSPLPQDVAFLSDGLSNAVGAQTGRRVTFTTPQRGKAREWLEQTAENARLAAQERL 381 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 ++ I + L +RIE +D SH G V VV G G K+QYR+++ Sbjct: 382 ASRIGLETRFAALRAVTGLS-QIQRIECFDISHTQGELTVASCVVFGVEGAQKDQYRRYS 440 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + DD A M L RRF++ + PDV+++DGG GQ+ Sbjct: 441 IEG--ITPGDDYAAMHQALTRRFARAQREG--------------GILPDVLLIDGGAGQV 484 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK------GEALVLNMRDPILYFI 530 + AQ VL L ++ + ++ +AKG R AG E+ K GE L+ DP L+ I Sbjct: 485 AQAQAVLSALAID-SVYLLGVAKGVARRAGEERLIRPKTSTGQGGEETRLDPHDPALHLI 543 Query: 531 QRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 Q++RDEAHRFAIT HR RR+KA S L++I G+G R++ LL FG ++ + +S L Sbjct: 544 QQVRDEAHRFAITGHRARRQKARTQSDLEKIPGVGAKRRQALLTHFGGMRGLRHASVAEL 603 Query: 590 ASIEGISKKIACKIYNHFHKNTS 612 A + GIS +A I H+ Sbjct: 604 AKVPGISMSLAEGIQAWLHEGAD 626 >gi|198283111|ref|YP_002219432.1| excinuclease ABC subunit C [Acidithiobacillus ferrooxidans ATCC 53993] gi|198247632|gb|ACH83225.1| excinuclease ABC, C subunit [Acidithiobacillus ferrooxidans ATCC 53993] Length = 623 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 227/609 (37%), Positives = 331/609 (54%), Gaps = 22/609 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PG+YQM R+LYVGKA NL++R+ SY HT + M++Q+ + VT Sbjct: 28 TLTSQPGIYQMFGQGSRLLYVGKARNLRRRVSSYFQKQRHTPKTLAMLAQVTRVEVVVTH 87 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EAL+LEAN+IKR P +NILLRDDKS+PY+ I H P + HR + +G YFGP Sbjct: 88 TETEALVLEANLIKRHHPPYNILLRDDKSYPYLFIETGHGTPRMSLHRGAQKGKGHYFGP 147 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + +V A+ +++ LQ+ F LR+C D F HR+R CL FQI+RCSGPC G IS E Y V Sbjct: 148 YPAVTALRESMVLLQKAFRLRTCEDHTFHHRSRACLQFQIRRCSGPCVGHISGEDYARDV 207 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NR 241 + +FL G + + M A + D+E A RD++AALS IQ Sbjct: 208 ADTIRFLEGKSDEAIRSLGERMQAAAEQLDFEEAARRRDQIAALSKIQERQYVAQAGGGD 267 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D + + F G+ G + F + E +L+ FL QFY+DK P Sbjct: 268 FDVLAAAQENGQWVVYVSFIRNGRQLGGRSVFPRHTEEVRAPDVLAAFLMQFYSDKEVPG 327 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 N+L++ + L + + G++V I P++G +++ + AL NA + Q+ T + Sbjct: 328 NLLVNVLPRSPTSLAEALGSEAGHRVMIDQPQRGPRKRWMALALTNAMGALRQRTQTAGA 387 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 + + + F LP IP+R+E +D SH G AV VV G++G +KN+YR+FN+ Sbjct: 388 GRRRMLLLQELFQLPEIPQRVECFDISHTRGEVAVASCVVFGDDGALKNEYRRFNIRD-- 445 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 ++ DD A M + RR+ +L K + P++V +DGG GQ++ AQ Sbjct: 446 IRGGDDYAAMEQAVHRRYGRLQKEG--------------LALPEIVFIDGGAGQVARAQA 491 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRF 540 L L + I + +AKG R G+E + L+ DP L IQ +RDEAHRF Sbjct: 492 ALDALEI-GCIQLCGVAKGTTRRPGLEMLHIPGWAVPRQLDDDDPALLVIQEIRDEAHRF 550 Query: 541 AITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AIT HR RR KA S LD I+GIGP R+ LL++FG ++ I + E L +EGI ++ Sbjct: 551 AITGHRARRGKARQESDLDGISGIGPKRRVALLRAFGGLRGIRDAGMEDLQRVEGIHLEL 610 Query: 600 ACKIYNHFH 608 A +IY+ FH Sbjct: 611 AQRIYDFFH 619 >gi|160939920|ref|ZP_02087267.1| hypothetical protein CLOBOL_04811 [Clostridium bolteae ATCC BAA-613] gi|158437354|gb|EDP15119.1| hypothetical protein CLOBOL_04811 [Clostridium bolteae ATCC BAA-613] Length = 659 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 190/629 (30%), Positives = 314/629 (49%), Gaps = 22/629 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M + ++YVGKA +L+ R++ Y S+ N T +I M+S I + Sbjct: 7 ELKKLPASPGVYLMHNDRDEIIYVGKAISLKNRVRQYFQSSRNKTAKIEQMVSHIAWFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-G 119 +T +E+EAL+LE N+IK +PR+N +L+DDKS+PYI T P L RD Sbjct: 67 ILTDSELEALVLECNLIKEHRPRYNTMLKDDKSYPYIKATMGEDFPRLLFARDMKKDGRS 126 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISS 177 YFGP+ S AV+ T++ + + + +R+C ++ + + RPCL + IK+C PC G IS Sbjct: 127 RYFGPYTSAGAVKDTLDLIHKLYRIRTCNRNLPKDTGKERPCLNYHIKQCDAPCQGYISR 186 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E+Y ++A FL+G L + + M A+ ++E AI +R+ L ++ + Sbjct: 187 EEYQSNFNQALDFLNGRFDPLIKNLQEKMQTASDNLEFERAIEYRELLNSVKQVAQKQKI 246 Query: 238 IYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + M D ++ ++ A +Q F G+ G F + + +IL F++QFY Sbjct: 247 TSSGMEDRDIVAMARDERDAVVQVFFIREGKLIGRDHFHISAATAENEGEILDSFVKQFY 306 Query: 295 TDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----H 349 P P + L + ++ + G KV++ VPK+GEK +++E A NA Sbjct: 307 AGTPFIPRELWLQHPLGDEEVISQWLSAKRGQKVRLVVPKKGEKERLVELAARNAALVLS 366 Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 + + E+ + + +R+E YD S+ G +VG MVV + + Sbjct: 367 QDKERIKKEELRTIGAINQ-IGELIGIGGIRRMEAYDISNTSGVESVGSMVVYEDGRPKR 425 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL-NFHPKKQEYSFPSWPDVVI 468 + YRKF + V+ +D A M VL RRFS ++ E L SF +PD+++ Sbjct: 426 SDYRKFRIKT--VQGPNDYASMEEVLTRRFSHGMRETEELKEKGADLSMGSFTRFPDLIM 483 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 +DGG+GQ++ A VL KL + I + + K + ++ Sbjct: 484 MDGGRGQVNIALEVLDKLGLS--IPVCGMVKDDNHRTRG---LYYNNVEIPIDRHSEGFR 538 Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 I R++DEAHRFAI HR R K S LD+I GIGP R++ L++ F ++ + +S E Sbjct: 539 LITRIQDEAHRFAIEYHRSLRGKGQVKSILDDIPGIGPARRKALMRHFKDIEAVRSASVE 598 Query: 588 TLASIEGISKKIACKIYNHFHKNTSHTPT 616 L ++++ A +Y FH + T Sbjct: 599 ELEQTPQMNRRSAESVYRFFHGDKESDRT 627 >gi|260888187|ref|ZP_05899450.1| excinuclease ABC subunit C [Selenomonas sputigena ATCC 35185] gi|260862021|gb|EEX76521.1| excinuclease ABC subunit C [Selenomonas sputigena ATCC 35185] Length = 627 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 203/611 (33%), Positives = 318/611 (52%), Gaps = 35/611 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRFTVTC 64 +P+ PGVY M D GR++YVGKA L+ R++ Y S H ++ M+++I + +T Sbjct: 32 LPDSPGVYIMKDAKGRIIYVGKAVVLKNRVRQYFQSGKHQAPKVRAMVAKIADFETILTH 91 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +EVEAL+LE N+IK+ +PR+NI L+DDKS+PY+ +T + P + R + YFGP Sbjct: 92 SEVEALILECNLIKKHRPRYNISLKDDKSYPYLKVTLADEYPRVVVTRRVTKDGSRYFGP 151 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + S A+ +++ L+R F LR+C + RPCL + IKRC PC + E+Y + Sbjct: 152 YTSAGAMHESVKLLKRLFPLRTCKNMKVE---RPCLEYHIKRCLAPCCEPVDKEEYGAMI 208 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRM 242 E FL G ++++++R M +A D+E A RD++AA+ + + + Sbjct: 209 REVCLFLEGRTEQVEKELSRRMTEAAEDYDFERAARLRDQIAAVRKVAEKQNIVTGSGDQ 268 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-CPE 301 D + + A + G+ G F L E T+ +L+ FL+Q+Y P Sbjct: 269 DAIGMARSGLGAVVMVFLIRAGKMVGREHFLLSGSEEETDEALLTAFLKQYYHRAAFVPR 328 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST--- 358 ILL EET LLE ++ G KV + VP++G K ++E A NA + T + + Sbjct: 329 EILLPFPIEETELLEGWLAERKGAKVALAVPQRGTKHDVVEMARSNAEKYLTDEAARIEQ 388 Query: 359 -EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 +++ + L P R+E +D SH G V MVV K+ YR+F + Sbjct: 389 ANDQTLGAVRELGRYLGLKEEPMRMECFDISHNQGSETVASMVVFEGGLPKKSDYRRFKI 448 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + DD MR V ERR+++L ++E PD++I+DGGKGQLS Sbjct: 449 RSAEG-KPDDFLSMREVTERRYTKLAEDE----------------MPDLIIIDGGKGQLS 491 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 +A +++ + ++ +AK + F + ++L R LY I+R+RDEA Sbjct: 492 SALEIIRGAG-HLTVPVVGLAKQFE-----YIFTEGSSDPVILPRRSQALYLIERIRDEA 545 Query: 538 HRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HRK R K+ S LD I GIGP R++ L FGT+ I +S E LA+++G++ Sbjct: 546 HRFAITYHRKLRGKRNLVSVLDHIAGIGPKRRKALWNHFGTIAKIKAASVEELAAVDGMT 605 Query: 597 KKIACKIYNHF 607 A + N F Sbjct: 606 LPAAEAVKNFF 616 >gi|54298634|ref|YP_125003.1| excinuclease ABC subunit C [Legionella pneumophila str. Paris] gi|81369772|sp|Q5X1P5|UVRC_LEGPA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|53752419|emb|CAH13851.1| hypothetical protein lpp2698 [Legionella pneumophila str. Paris] Length = 618 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 219/621 (35%), Positives = 339/621 (54%), Gaps = 34/621 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P PG+Y+MLD G VLYVGKA NL+KR+ SY N + ++SQI +I +VT Sbjct: 16 KLPSEPGIYRMLDEEGTVLYVGKAANLKKRVNSYFSKQNTGVKTRALVSQIKSIEISVTR 75 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFG 123 +E EALLLE+N+IK L+P++N+LLRDDKS+PYI +++ P + +R G++FG Sbjct: 76 SETEALLLESNLIKALRPKYNVLLRDDKSYPYIHLSNHPDFPRIELYRSKKKPPSGNFFG 135 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ V AV +TI ++Q+ F +R+C DS F+ R+RPCL +QIKRC+ PC IS E Y Sbjct: 136 PYPGVAAVRETIVTIQKIFKIRNCRDSYFKARSRPCLQYQIKRCTAPCVHYISPENYKLS 195 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NR 241 V +A +FL G + + +A M QA + ++E A + RD++ L IQ + Sbjct: 196 VEDAIRFLQGKCQIILDALAERMKQAVNQLNFEEAAVLRDQIKNLRLIQEQQGVVQLRGD 255 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ---------ILSYFLRQ 292 D ++ ACIQ GQ + +FF + + F+ Sbjct: 256 ADVIAIEVRPGFACIQCVTIREGQVLNSQSFFPTVPYAVLDEELDANSLWQQTFEAFIGF 315 Query: 293 FYTDKP--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR 350 +Y D P+ I+ ++ E+ LE ++ G KI V +G K + ++ A+ N Sbjct: 316 YYLDTTERIPDLIITNQSITESRSLEYILSQRRGKSCKIQVNPRGVKSRWMDFAVNNLRI 375 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 S + +S + + + + AL +R+E +D SH G + V VV G + Sbjct: 376 SVAEYVSKHSTIRSRYQALKQLLALDKNIERMECFDISHTQGEATVASCVVFDTEGPRPS 435 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 +YR+FN+ + DD A M + RRF +LI + PDV+I+D Sbjct: 436 EYRRFNIEG--ITPGDDYAAMEQAVTRRFKRLIDAQ---------------LLPDVLIID 478 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYF 529 GGKGQ+S + VL L VE+ IT++ ++KGP R AG EK V + VL L+ Sbjct: 479 GGKGQVSIVKRVLTSLGVED-ITLLGVSKGPSRKAGWEKLILVNENREFVLPEDSKALHL 537 Query: 530 IQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 +Q +RDEAHRFAIT HRK+R+K S L+ I G+G R++ LLQ FG ++ ++++ E Sbjct: 538 LQHIRDEAHRFAITAHRKKRQKTRVESTLESIEGVGAKRRQALLQRFGGLRELAKAPLEE 597 Query: 589 LASIEGISKKIACKIYNHFHK 609 + ++GIS+++A +I+ HFH Sbjct: 598 ICKVQGISEQLAKRIHEHFHP 618 >gi|218667420|ref|YP_002425340.1| excinuclease ABC, C subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|218519633|gb|ACK80219.1| excinuclease ABC, C subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 608 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 227/609 (37%), Positives = 331/609 (54%), Gaps = 22/609 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PG+YQM R+LYVGKA NL++R+ SY HT + M++Q+ + VT Sbjct: 13 TLTSQPGIYQMFGQGSRLLYVGKARNLRRRVSSYFQKQRHTPKTLAMLAQVTRVEVVVTH 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EAL+LEAN+IKR P +NILLRDDKS+PY+ I H P + HR + +G YFGP Sbjct: 73 TETEALVLEANLIKRHHPPYNILLRDDKSYPYLFIETGHGTPRMSLHRGAQKGKGHYFGP 132 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + +V A+ +++ LQ+ F LR+C D F HR+R CL FQI+RCSGPC G IS E Y V Sbjct: 133 YPAVTALRESMVLLQKAFRLRTCEDHTFHHRSRACLQFQIRRCSGPCVGHISGEDYARDV 192 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NR 241 + +FL G + + M A + D+E A RD++AALS IQ Sbjct: 193 ADTIRFLEGKSDEAIRSLGERMQAAAEQLDFEEAARRRDQIAALSKIQERQYVAQAGGGD 252 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D + + F G+ G + F + E +L+ FL QFY+DK P Sbjct: 253 FDVLAAAQENGQWVVYVSFIRNGRQLGGRSVFPRHTEEVRAPDVLAAFLMQFYSDKEVPG 312 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 N+L++ + L + + G++V I P++G +++ + AL NA + Q+ T + Sbjct: 313 NLLVNVLPRSPTSLAEALGSEAGHRVMIDQPQRGPRKRWMALALTNAMGALRQRTQTAGA 372 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 + + + F LP IP+R+E +D SH G AV VV G++G +KN+YR+FN+ Sbjct: 373 GRRRMLLLQELFQLPEIPQRVECFDISHTRGEVAVASCVVFGDDGALKNEYRRFNIRD-- 430 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 ++ DD A M + RR+ +L K + P++V +DGG GQ++ AQ Sbjct: 431 IRGGDDYAAMEQAVHRRYGRLQKEG--------------LALPEIVFIDGGAGQVARAQA 476 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRF 540 L L + I + +AKG R G+E + L+ DP L IQ +RDEAHRF Sbjct: 477 ALDALEI-GCIQLCGVAKGTTRRPGLEMLHIPGWAVPRQLDDDDPALLVIQEIRDEAHRF 535 Query: 541 AITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AIT HR RR KA S LD I+GIGP R+ LL++FG ++ I + E L +EGI ++ Sbjct: 536 AITGHRARRGKARQESDLDGISGIGPKRRVALLRAFGGLRGIRDAGMEDLQRVEGIHLEL 595 Query: 600 ACKIYNHFH 608 A +IY+ FH Sbjct: 596 AQRIYDFFH 604 >gi|149908473|ref|ZP_01897136.1| excinuclease ABC subunit C [Moritella sp. PE36] gi|149808636|gb|EDM68571.1| excinuclease ABC subunit C [Moritella sp. PE36] Length = 625 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 220/623 (35%), Positives = 338/623 (54%), Gaps = 34/623 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D V+YVGKA +L KR+ SY + +++ I NI TV Sbjct: 21 LKTVSHQPGVYRMYDHKDVVIYVGKAKDLHKRLTSYFRKTVDREKTRVLVTHITNIDVTV 80 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE IKR +PR+N+ LRDDKS+PYILIT HK P L R + +G YF Sbjct: 81 THSETEALVLEHTYIKRYQPRYNVSLRDDKSYPYILIT-AHKHPQLTSIRSKNKRKGQYF 139 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ S AV ++++ +Q+ F +R C DS +++R+RPCL FQ+KRC GPC + E+Y + Sbjct: 140 GPYPSGSAVRESLHLMQKLFPVRQCEDSYYQNRSRPCLQFQLKRCLGPCVKMDNPEEYNQ 199 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240 V A FL G N ++ ++ M A+ + D+E+A +RD++ AL IQ + Sbjct: 200 QVELAALFLKGKNIDVINELVMKMENASQQLDFEAAARYRDQIQALRTIQEQQYVTSDLG 259 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-- 298 MD + +AC+ F G+ G+ ++F K +++ ++++ FL Q+Y +K Sbjct: 260 EMDVIGFAYKNGIACVHLLFVRSGKVFGSRSYFPKVPADTDISEVIQAFLLQYYLNKETQ 319 Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P+ +LL+E E+ L+E S + G K+K+T PK+G++ K + AL NA + T KL Sbjct: 320 QAIPKEVLLTELPEDNDLIESSLSQLAGRKIKLTSPKRGDRHKFLRLALTNAESALTTKL 379 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 +T+ + K K +R+E +D SH G V VV +G K YR +N Sbjct: 380 ATKSTVLNRFKALEKVLKFDGKIQRMECFDISHTGGEQTVASCVVFNRDGPNKTDYRHYN 439 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + + DD A M VL+RRF ++ + ++ PD++ +DGGKGQ+ Sbjct: 440 I--SGITGGDDYAAMAQVLDRRFKKVAEVDK---------------IPDILFIDGGKGQM 482 Query: 477 SA---AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK------GEALVLNMRDPIL 527 + V R II IAKG R AG+E + L P L Sbjct: 483 TQAERVLTQYADNFVVKRPLIIGIAKGVTRKAGLETLILSGALDNVPDIEFYLPSDSPAL 542 Query: 528 YFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586 + +Q +RDE+HRFAIT HR RR K S L+ I G+GP R+++LL+ G ++ + +S Sbjct: 543 HLVQHIRDESHRFAITGHRARRNKVKRTSALENIPGVGPKRRQVLLKYMGGLQQLRGASR 602 Query: 587 ETLASIEGISKKIACKIYNHFHK 609 E +A + GIS +A KIY+ H+ Sbjct: 603 EEIAKVPGISIDLAEKIYDSLHQ 625 >gi|134095247|ref|YP_001100322.1| excinuclease ABC subunit C [Herminiimonas arsenicoxydans] gi|229558034|sp|A4G6R2|UVRC_HERAR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|133739150|emb|CAL62199.1| UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C) [Herminiimonas arsenicoxydans] Length = 618 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 217/619 (35%), Positives = 324/619 (52%), Gaps = 34/619 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P PGVY+ D +LYVGKA +L+KR+ SY N + R M+ +I + T+T Sbjct: 19 KLPNLPGVYRYFDAENNLLYVGKARDLKKRVSSYFLKNLASPRTALMVEKIARLETTITR 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L+PR+NIL RDDKS+PY+ IT + K P + +R + + YFGP Sbjct: 79 SEAEALLLENNLIKTLQPRYNILFRDDKSYPYLKITGQ-KFPRMAYYRGAVDKKNQYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV++++ LQ+ F LR+C DSVF +RTRPCLL QI RCS PC IS E Y V Sbjct: 138 FPSGWAVKESMQILQKVFLLRTCEDSVFANRTRPCLLHQIHRCSAPCVNYISQEDYALDV 197 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 A KFL G + E + M + +E A + R+++ ALS + + Sbjct: 198 DNAAKFLRGRQTEVLEVLQAKMLAYAEELKFEQAALVRNQINALSRVLHQQSMDTGGDAD 257 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT-------DSESTNAQILSYFLRQFY 294 +D ++ AC+ G++ G +F ES A+++ FL Q Y Sbjct: 258 IDIIAVIVQGGRACVNLAMVRGGRHLGDRAYFPTHVDNVLTNAEESVAAEVMKAFLAQHY 317 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 DK P ++L+ E +E L+ +Q G+++ + QG +R+ +E A A S + Sbjct: 318 IDKFIPGTLILNTEIDEPELMLALM-QQCGHRINLIFQPQGPRRQWLEMAQKGAEISLAR 376 Query: 355 KLST---EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 LS + + +L D K R+E +D SH G + VV + + Sbjct: 377 LLSEQGSQQTRTRMLVDALKIDVEDIEAFRVECFDISHTQGEATQASCVVFHHHAMQNGE 436 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YR++N++ + DD A MR VL RR+ ++ + PDVV++DG Sbjct: 437 YRRYNIND--ITPGDDYAAMRQVLMRRYEKVANGD--------------GVMPDVVLIDG 480 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFI 530 GKGQ+ A+ V +L ++ + I+ +AKG R G+E G L L I Sbjct: 481 GKGQVEMARQVFVELGLDISL-IVGVAKGEGRKVGLETLVFVDGRAPQELGKESGALMLI 539 Query: 531 QRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 ++RDEAHRFAIT R +R KA S L+EI GIG R++ LL FG ++ + +S E L Sbjct: 540 AQIRDEAHRFAITGMRAKRAKARQTSRLEEIEGIGAKRRQKLLARFGGLRGVVDASVEDL 599 Query: 590 ASIEGISKKIACKIYNHFH 608 +S+EGIS+++A IY H Sbjct: 600 SSVEGISRQLAEDIYKQLH 618 >gi|309781195|ref|ZP_07675932.1| excinuclease ABC subunit C [Ralstonia sp. 5_7_47FAA] gi|308920016|gb|EFP65676.1| excinuclease ABC subunit C [Ralstonia sp. 5_7_47FAA] Length = 657 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 213/637 (33%), Positives = 328/637 (51%), Gaps = 48/637 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P PGVY+ D+ G VLYVGKA +L+KR+ SY + + RI M+++I I TV Sbjct: 36 RLPNLPGVYRYFDVQGNVLYVGKARDLKKRVSSYFNKTLLSPRIAMMVAKIARIDTTVVR 95 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T +H P + +R ++ + YFGP Sbjct: 96 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-QHAYPRMAYYRGATDRRHQYFGP 154 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV +++ LQ+ F LR+C D+VF +RTRPCLL QI RCSGPC IS+E Y V Sbjct: 155 FPSAHAVRESMQILQKVFRLRTCEDTVFNNRTRPCLLHQIHRCSGPCVQAISAEDYARDV 214 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS----IYN 240 A FL G + + + M + +E A I RD++ ALS + + Sbjct: 215 ANAASFLQGRQDEVMQTLQDKMQRYAESLAFEQAAIVRDQIGALSTVLKQQSVEEVGHAS 274 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT------------------------ 276 +D ++ AC+ G++ G +F Sbjct: 275 DIDILAVAIKGGHACVNLAMVRGGRHLGDKAYFPTHVEEGAAIVGVDVEADSVSAAETSR 334 Query: 277 DSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGE 336 D+E IL F+ Q Y D+ P +++S T L+ + +Q G ++ + QG Sbjct: 335 DAERMARDILEAFVAQHYLDQFVPPVLVVSHPILATELI-DALAEQAGRRISVVRQPQGG 393 Query: 337 KRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP---KRIEIYDNSHIMGC 393 +R +E A A S ++LS + S Q + + + R+E +D SH G Sbjct: 394 RRAWLEMAEKGAELSLMRRLSEQGSQQARTRALAETIGIDLEDLAALRVECFDISHTAGE 453 Query: 394 SAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP 453 + VV + ++YR++N+ + DD A MR VL RR+ ++++ Sbjct: 454 ATQASCVVFHSHAMQNSEYRRYNIQD--ITPGDDYAAMRQVLTRRYQKIVEQ-------- 503 Query: 454 KKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK 513 P+ P +V++DGGKGQ+ A+ V ++L ++ + ++ +AKG R G+E Sbjct: 504 --AGEDAPNMPTIVLIDGGKGQVEVARQVFEELGLDIGL-LVGVAKGEGRKVGLETLVFA 560 Query: 514 KGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLL 571 G L L L + ++RDEAHRFAIT R +R KA S L+EI GIG R++ L Sbjct: 561 DGRPSLELGQGSAALMLVAQIRDEAHRFAITGMRAKRAKARNTSRLEEIEGIGAKRRQRL 620 Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 L FG ++ + +S + LA++EGIS+ +A +IY H Sbjct: 621 LARFGGLRGVMAASVDELATVEGISQTLAEEIYRQLH 657 >gi|187928031|ref|YP_001898518.1| excinuclease ABC subunit C [Ralstonia pickettii 12J] gi|187724921|gb|ACD26086.1| excinuclease ABC, C subunit [Ralstonia pickettii 12J] Length = 657 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 213/637 (33%), Positives = 325/637 (51%), Gaps = 48/637 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P PGVY+ D G VLYVGKA +L+KR+ SY + + RI M+++I I TV Sbjct: 36 RLPNLPGVYRYFDAQGNVLYVGKARDLKKRVSSYFNKTLLSPRIAMMVAKIARIDTTVVR 95 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 E EALLLE N+IK L PR+NIL RDDKS+PY+ +T +H P + +R ++ + YFGP Sbjct: 96 NEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-QHAYPRMAYYRGATDRRHQYFGP 154 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV +++ LQ+ F LR+C D+VF +RTRPCLL QI RCSGPC I +E Y V Sbjct: 155 FPSAHAVRESMQILQKVFQLRTCEDTVFNNRTRPCLLHQIHRCSGPCVQAIGAEDYARDV 214 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS----IYN 240 A FL G + + + M + ++E A I RD++ ALS + + Sbjct: 215 ANAAGFLQGRQDEVMQTLQDKMQRYAESLEFEQAAIVRDQIGALSTVLKQQSVEEVGHAS 274 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT------------------------ 276 +D ++ AC+ G++ G +F Sbjct: 275 DIDILAVAIKGGHACVNLAMVRGGRHLGDKAYFPTHVEEGAAIVGVDVEADGEAAAETSR 334 Query: 277 DSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGE 336 D+E + IL F+ Q Y D+ P +++S + T L+ +Q G +V + QG Sbjct: 335 DAERMASDILEAFVAQHYLDQFVPPVLVVSHQIHATELINA-LAEQAGRRVSVVRQPQGG 393 Query: 337 KRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP---KRIEIYDNSHIMGC 393 +R +E A A S ++LS + S Q + + R+E +D SH G Sbjct: 394 RRAWLEMAEKGAELSLMRRLSEQGSQQARTLALAETIGIDLEDLAALRVECFDISHTAGE 453 Query: 394 SAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP 453 + VV + ++YR++N+ + DD A MR VL RR+ ++++ Sbjct: 454 ATQASCVVFHSHAMQNSEYRRYNIQD--ITPGDDYAAMRQVLTRRYQKIVEQ-------- 503 Query: 454 KKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK 513 P+ P +V++DGGKGQ+ A+ V ++L ++ + ++ +AKG R G+E Sbjct: 504 --AGEDAPNMPTIVLIDGGKGQVEVARQVFEELGLDIGL-LVGVAKGEGRKVGLETLVFA 560 Query: 514 KGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLL 571 G L L L + ++RDEAHRFAIT R +R KA S L+EI GIG R++ L Sbjct: 561 DGRPSLELGQGSAALMLVAQIRDEAHRFAITGMRAKRAKARNTSRLEEIEGIGAKRRQRL 620 Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 L FG ++ + +S LA++EGIS+ +A +IY H Sbjct: 621 LARFGGLRGVMAASVAELATVEGISQTLAEEIYRQLH 657 >gi|91792795|ref|YP_562446.1| excinuclease ABC subunit C [Shewanella denitrificans OS217] gi|119367833|sp|Q12PA3|UVRC_SHEDO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|91714797|gb|ABE54723.1| Excinuclease ABC subunit C [Shewanella denitrificans OS217] Length = 609 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 202/616 (32%), Positives = 323/616 (52%), Gaps = 28/616 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + GVY+M D G V+YVGKA +L+KR+ SY +N + ++S I NI T+ Sbjct: 10 LKNLSSSAGVYRMYDAKGEVIYVGKAKDLKKRLSSYFRANLGNIKTQALVSHITNIDVTL 69 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E +ALLLE + IK+ P++N+LLRDDKS+PY+ ++ HK P L HR +G YF Sbjct: 70 THSETDALLLENDYIKQYMPKYNVLLRDDKSYPYLFLS-GHKHPRLAYHRGPQREKGRYF 128 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + AV +++N LQ+ F +R C D ++ RTRPCL +Q+ RCS PC +++ E Y E Sbjct: 129 GPYPNGGAVRESLNLLQKLFPIRQCDDLYYKARTRPCLQYQLGRCSAPCVNKVTDEDYAE 188 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240 V A FL G + + + M QA + YE A +RD++ AL + + + Sbjct: 189 QVQLASLFLQGKDQQVVTNLVTKMEQAAEEFHYEQAAAYRDQITALRKVAEQQEVSLDKG 248 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC- 299 MD +++ K +AC F G+ G+ +++ +++ ++LS F+ QFY + Sbjct: 249 DMDVIGVHYEKAIACFHMLFIRSGKIFGSRSYYPSVPAQTDIDEVLSAFISQFYLNADVQ 308 Query: 300 ---PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P ++LS+ + + LE + + K I +GE+ + AL NA + T +L Sbjct: 309 RTLPNEVILSQSFSDKAELESAIAEALEKKFIIKTQVRGERASFLRLALTNATNAVTTRL 368 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + + + + + L H R+E +D SH MG S V VV G K YR++N Sbjct: 369 ADKNTQEQRFSLLEEALELGHSIGRMECFDISHTMGESTVASCVVFNREGPHKADYRRYN 428 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + + DD A M + RRF ++ N + PD+V +DGG GQL Sbjct: 429 I--SGITGGDDYAAMEQAINRRFDKIDTNGK---------------VPDIVFIDGGLGQL 471 Query: 477 SAAQGVLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRL 533 AQG++ + +++ +I + KG R AG+E F E L + I + Sbjct: 472 RIAQGIVDEKCAHLDRPPLLIGVTKGEGRKAGLETFVFGGSEQQFNLPSDSGAFHLILHI 531 Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDE+HRFAIT HR +R+K S L+ I G+GP R++ LLQ G ++ + +S L + Sbjct: 532 RDESHRFAITGHRNKRQKTRNTSSLESIAGVGPKRRKALLQHLGGLQEVKGASVAELTKV 591 Query: 593 EGISKKIACKIYNHFH 608 GIS ++A I++ Sbjct: 592 PGISLEMAQTIHDALR 607 >gi|304313068|ref|YP_003812666.1| Nuclease subunit of the excinuclease complex [gamma proteobacterium HdN1] gi|301798801|emb|CBL47034.1| Nuclease subunit of the excinuclease complex [gamma proteobacterium HdN1] Length = 616 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 206/615 (33%), Positives = 324/615 (52%), Gaps = 29/615 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + + PGVY+MLD G VLYVGKA NL+ R+ SY S + ++ +I + TVT Sbjct: 18 SLTQAPGVYRMLDGKGEVLYVGKAKNLKSRVSSYFRSKQLPIKTAALVQRIQRVEVTVTL 77 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E+EALLLE +IK +P FNILLRDDKS+PYI ++ + P L HR +G YFGP Sbjct: 78 SEIEALLLEQTLIKEYRPPFNILLRDDKSYPYIFLS-DEEWPRLAYHRGPKKAKGRYFGP 136 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + S AV +T+N L++ F LR C ++ FR+R RPCL QI+RC+ PC G +S+E Y E V Sbjct: 137 YPSSLAVRETLNLLEKMFQLRQCDNAFFRNRQRPCLKQQIQRCTAPCVGLVSAEDYAEQV 196 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRM 242 FL G ++ + E+IA M QA ++E A R++L A+ +Q M Sbjct: 197 RMTVLFLEGKSNQIAEEIAAKMEQAAATLEFERAATLRNQLTAIRRVQEQQYVDGEGGDM 256 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLK----TDSESTNAQILSYFLRQFYTDK- 297 D F + + +AC Q F G+ G+ ++F D + +L+ F+ ++ Sbjct: 257 DVFGIAIAEGVACFQVVFVRAGRVLGSKSYFEPAYGVGDGTDEHQDVLTEFISNYFLGNI 316 Query: 298 --PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 PE++ L + +E S ++Y + + A NA + Sbjct: 317 TRDVPEDVYLPHKIGFAESVEKSIRERYHRHFRFVYRLASNRSGWARLAARNAEENLESH 376 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L+ + + + ++ + +P+R+E +D SH G V VV NG ++ YR+F Sbjct: 377 LANKRTQWQKHQSLQEQLRMASLPQRLECFDISHTSGEHPVASCVVFDLNGPRRSDYRRF 436 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ ++ DD A + + RR+ + + + L PD++++DGGKGQ Sbjct: 437 NIRD--IQPGDDYAAIEQAVFRRYQKCVDQHQPL--------------PDLILIDGGKGQ 480 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYFIQRLR 534 L A L+K+ V + +++IAKG R AG+E F V + L +Q++R Sbjct: 481 LGRAVIALEKIGVGSE-RLLAIAKGHTRKAGLETLFTVARPLGFSLPRDCGASLLLQQIR 539 Query: 535 DEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DEAHRFAIT HR +R KA S ++++ G+GP+R++ LL FG + + +S E +A ++ Sbjct: 540 DEAHRFAITGHRGQRLKARVRSSVEDLPGVGPVRRKRLLNHFGGLSALRSASQEEIAKVK 599 Query: 594 GISKKIACKIYNHFH 608 GIS K+A +IY H Sbjct: 600 GISSKLAEEIYEALH 614 >gi|302868795|ref|YP_003837432.1| excinuclease ABC subunit C [Micromonospora aurantiaca ATCC 27029] gi|302571654|gb|ADL47856.1| excinuclease ABC, C subunit [Micromonospora aurantiaca ATCC 27029] Length = 650 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 187/641 (29%), Positives = 305/641 (47%), Gaps = 41/641 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVT 63 +PE PGVY+ D GRV+YVGKA NL+ R+ SY R M+ ++ + Sbjct: 13 TIPESPGVYRFRDGTGRVIYVGKARNLRSRLNSYFADPVGLHQRTRQMVFTAESVDWITV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL E IK+ PRFN+ RDDKS+PY+ +T + P L R YFG Sbjct: 73 ATEVEALQQEYTWIKQYDPRFNVRYRDDKSYPYLAVTLDEEYPRLQVMRGVKRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F R+C+ VF+ RPCLL I +CS PC G +++E++ Sbjct: 133 PYSHAWAIRETLDLLLRVFPARTCSSGVFKRAGQVGRPCLLGYIGKCSAPCVGSVTAEQH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E V F++G + ++ + M A+ + ++E A RD +AAL + Sbjct: 193 REIVDGFCDFMAGRTDTMVRRLEKEMLDASEQLEFERAARLRDDVAALRRAMEKQTVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294 D + + A +Q G+ RG + ++ E T ++ +F Q Y Sbjct: 253 DGTDADVVAFADDPLEAAVQVFHVRGGRVRGQRGWVVEKTEELTTGDLVHHFCTQVYGGE 312 Query: 295 -TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 + P +L+ E + L + G +V + VP++G+KR ++E NA + Sbjct: 313 QGEADVPRELLVPELPGDADALADWLTARRGSRVSLRVPQRGDKRSLLETVERNARDALA 372 Query: 354 QKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 + + L + A+ P RIE +D S I G V MVV + K Sbjct: 373 RHKLKRAGDLTTRSQALDEIADALAMNTSPLRIECFDVSQIQGTDVVASMVVFEDGLPRK 432 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN---------------EENLNFHPK 454 ++YR+F + DD + M VL RRF++ + + Sbjct: 433 SEYRRFIVRG----ATDDLSAMSEVLRRRFARYLDARAETGELGEETASDPDRPGIDPTT 488 Query: 455 KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK 514 + F P +V++DGG Q++AA L +L +++ + + +AK + E + Sbjct: 489 GRPRKFAYPPQLVVVDGGPPQVAAAAKALAELGIDD-VALCGLAKRLE-----EVWLPDD 542 Query: 515 GEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQ 573 ++L LY +QR+RDEAHRFAIT HR+RR K S LD + G+G +R++ LL+ Sbjct: 543 EFPVILPRTSEALYLLQRVRDEAHRFAITFHRQRRSKRMTESALDNVPGLGEVRRKALLR 602 Query: 574 SFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 FG++K +S ++ E + + G+ ++ A I +T+ T Sbjct: 603 HFGSLKRLSSATVEEITEVPGVGRRTAEAILAALDGSTTTT 643 >gi|254252836|ref|ZP_04946154.1| Nuclease subunit of the excinuclease complex [Burkholderia dolosa AUO158] gi|124895445|gb|EAY69325.1| Nuclease subunit of the excinuclease complex [Burkholderia dolosa AUO158] Length = 669 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 216/656 (32%), Positives = 332/656 (50%), Gaps = 57/656 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D AG VLYVGKA +L+KR+ SY + RI M+++I I TVT Sbjct: 19 QLPHMPGVYRYYDAAGTVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H+ P + +R S Q YFGP Sbjct: 79 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-AHRFPRMAYYRGSVDRQNQYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RC+ PC G IS E Y V Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVGAISEEDYAVDV 197 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 A +FL G + +++ + M+ + +E A R+++++L+ + + Sbjct: 198 SNAARFLLGRQSEVMKELEQKMHAFAAELKFEQAAAVRNQMSSLATVLHQQAIEVGSDSD 257 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT-----------------DSEST--- 281 D ++ C+ G++ G +F ++ + Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPTHVESALTLAEGGLGDEPEPTDESGDR 317 Query: 282 ---------------NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYK 326 A++L F+ Q Y P +++S LLE+ +Q G+K Sbjct: 318 PADEGADARAASASVEAEVLDAFIAQHYLGNRVPPVLVVSHAPASRDLLEL-LSEQVGHK 376 Query: 327 VKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP---KRIE 383 V + QG++R + A NA + + LS + S Q + + L RIE Sbjct: 377 VSLIRQPQGQRRAWLSMAEQNARLALARLLSEQGSQQARTRALAETLGLECDDLATLRIE 436 Query: 384 IYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLI 443 +D SH MG + VV + +YR++N+ + DD A MR VL RR+ +++ Sbjct: 437 CFDISHTMGEATQASCVVYHHHKMQSGEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMV 494 Query: 444 K---------NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITI 494 + + ++ ++ + P++V++DGGKGQ+ A+ V +L ++ + + Sbjct: 495 EQAAQSAAADDAAGIDGESTRRAEASSLLPNIVLIDGGKGQVEIARQVFTELGLDTSM-L 553 Query: 495 ISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA 553 + +AKG R G+E G L L L + ++RDEAHRFAIT R +R KA Sbjct: 554 VGVAKGEGRKVGLETLVFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKAR 613 Query: 554 -YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 S L+E+ G+G R++ LL FG ++ + +S E LAS+EGIS +A +IY H Sbjct: 614 QTSRLEELEGVGAKRRQRLLARFGGLRGVVAASVEELASVEGISHALAEQIYKQLH 669 >gi|315504735|ref|YP_004083622.1| excinuclease abc, c subunit [Micromonospora sp. L5] gi|315411354|gb|ADU09471.1| excinuclease ABC, C subunit [Micromonospora sp. L5] Length = 649 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 187/642 (29%), Positives = 306/642 (47%), Gaps = 41/642 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVT 63 +PE PGVY+ D GRV+YVGKA NL+ R+ SY R M+ ++ + Sbjct: 13 TIPESPGVYRFRDGTGRVIYVGKARNLRSRLNSYFADPVGLHQRTRQMVFTAESVDWITV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL E IK+ PRFN+ RDDKS+PY+ +T + P L R YFG Sbjct: 73 ATEVEALQQEYTWIKQYDPRFNVRYRDDKSYPYLAVTLDEEYPRLQVMRGVKRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F R+C+ VF+ RPCLL I +CS PC G +++E++ Sbjct: 133 PYSHAWAIRETLDLLLRVFPARTCSSGVFKRAGQVGRPCLLGYIGKCSAPCVGSVTAEQH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E V F++G ++ ++ + M A+ + ++E A RD +AAL + Sbjct: 193 REIVDGFCDFMAGRTDSMVRRLEKEMLDASEQLEFERAARLRDDVAALRRAMEKQTVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294 D + + A +Q G+ RG + ++ E T ++ +F Q Y Sbjct: 253 DGTDADVVAFADDPLEAAVQVFHVRGGRVRGQRGWVVEKTEELTTGDLVHHFCTQVYGGE 312 Query: 295 -TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 + P +L+ E + L + G +V + VP++G+KR ++E NA + Sbjct: 313 QGEADVPRELLVPELPGDADALADWLTARRGSRVSLRVPQRGDKRSLLETVERNARDALA 372 Query: 354 QKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 + + L + A+ P RIE +D S I G V MVV + K Sbjct: 373 RHKLKRAGDLTTRSQALDEIADALAMNTSPLRIECFDVSQIQGTDVVASMVVFEDGLPRK 432 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN---------------EENLNFHPK 454 ++YR+F + DD + M VL RRF++ + + Sbjct: 433 SEYRRFIVRG----ATDDLSAMSEVLRRRFARYLDARAETGELGEETASDPDRPGIDPTT 488 Query: 455 KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK 514 + F P +V++DGG Q++AA L +L +++ + + +AK + E + Sbjct: 489 GRPRKFAYPPQLVVVDGGPPQVAAAAKALAELGIDD-VALCGLAKRLE-----EVWLPDD 542 Query: 515 GEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQ 573 ++L LY +QR+RDEAHRFAIT HR+RR K S LD + G+G +R++ LL+ Sbjct: 543 EFPVILPRTSEALYLLQRVRDEAHRFAITFHRQRRSKRMTESALDNVPGLGEVRRKALLR 602 Query: 574 SFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615 FG++K +S ++ E + + G+ ++ A I +T+ T Sbjct: 603 HFGSLKRLSSATVEEITEVPGVGRRTAEAILAALDGSTTTTE 644 >gi|330860549|emb|CBX70849.1| UvrABC system protein C [Yersinia enterocolitica W22703] Length = 610 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 216/618 (34%), Positives = 338/618 (54%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D AG V+YVGKA +L+KR+ SY ++ + + ++ I I TV Sbjct: 11 LKTVTSQPGVYRMYDKAGTVIYVGKAKDLKKRLTSYFRAHVASRKTETLVKNIAQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P I ++ K P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPLIFLS-ADKHPRLAIHRGAKHEKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RCSGPC +S E+Y Sbjct: 130 GPFPNSYAVRETLALLQKLFPVRQCENSVYRNRSRPCLQYQIGRCSGPCVPGLVSEEEYQ 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 V + FLSG + + ++ M +A+ +E A RD++ A+ + + Sbjct: 190 RQVDYVRLFLSGKDQQVLTQLISRMEEASRSLHFEDAARIRDQIQAVRRVTEQQFVSGDS 249 Query: 242 M--DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 D + + LAC+ F G+ G+ ++F K + + ++++ F+ QFY Sbjct: 250 EDLDVIDVAFDAGLACVHVLFIRQGKVLGSRSYFPKVPAGTELSEVVQTFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL E LL S + G K++I +G++ + ++ A NA + + Sbjct: 310 VRTLPGEILLDFTLAEKDLLASSLSELAGRKIQIQSRPRGDRARYLKLARTNASTALVTR 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + +K+ K L R+E +D SH MG V VV NG V+++YR++ Sbjct: 370 LSQQSTIHQRMKELAKILNLD-EINRMECFDISHTMGEQTVASCVVFDANGPVRSEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + + DD A M VL+RR+ + + +++ PDV+ +DGGKGQ Sbjct: 429 NI--SGITPGDDYAAMSQVLKRRYGKALDDKK---------------IPDVIFIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 LS A V LNV + + ++ +AKG R AG+E F+ +GE L P L+ IQ Sbjct: 472 LSQAFDVFASLNVPWDKQKPLLVGVAKGSDRKAGLETLFLAAEGEGFSLPPDSPALHLIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RD++H AIT HR+RR K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDDSHNHAITGHRQRRSKVKNTSALELIEGVGPKRRQILLKYMGGLQPLLNASVEEIA 591 Query: 591 SIEGISKKIACKIYNHFH 608 + IS+ +A KIYN Sbjct: 592 KVPSISQALAEKIYNALK 609 >gi|148652021|ref|YP_001279114.1| excinuclease ABC subunit C [Psychrobacter sp. PRwf-1] gi|189038077|sp|A5WBX3|UVRC_PSYWF RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|148571105|gb|ABQ93164.1| Excinuclease ABC subunit C [Psychrobacter sp. PRwf-1] Length = 614 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 201/614 (32%), Positives = 310/614 (50%), Gaps = 29/614 (4%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+ML G +LYVGKA +L+ R+ SY + ++S+I++I +T Sbjct: 22 KRLPNLPGVYKMLGKNGDILYVGKAKSLKSRVNSYFAKTIDHPKTRALVSRIHDIETIIT 81 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI-QGSYF 122 +E EALLLE N+IK +P +N+LLRDDKS+ Y+ I+ P L R + +G +F Sbjct: 82 RSETEALLLEQNLIKEHRPPYNVLLRDDKSYLYVFISADQPYPRLAYGRGKAKHQKGKFF 141 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF S A ++T+ +Q+ F +R C ++ FR R RPCL +QIKRC PC G +S+E+Y Sbjct: 142 GPFPSAHAAKETLVLMQKMFQMRQCTNTFFRQRKRPCLEYQIKRCRAPCVGLVSAEEYAA 201 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--N 240 V +FL G + ++ + M + D+E A +RD+L+ L +Q+ Sbjct: 202 DVQNTIRFLKGDSSDIHTTLIEKMEHSAEALDFEKAAFYRDQLSMLREVQSRQAVYTVQG 261 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KP 298 D S+ + C+ G+ G +F DS LS F+ FY Sbjct: 262 EADIISIASQAGMTCVNVLTVRGGRVLGGKNYFPDVDSNEPINDNLSAFITSFYFQVTDD 321 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P I++S E + L+ + + K I + + + ++ A +NAH + KL Sbjct: 322 LPAEIIISHELPDQMALQEALSTYFEAKTVIKTNVREHRAEWLDLAKLNAHNALKTKLGD 381 Query: 359 EISHQMILKDFTK--KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + + + IE +D SH MG + + VV + G K YR++ Sbjct: 382 YLELHARFAALKEVLEPVSQSSIDTIECFDISHTMGEATIASCVVFDQGGARKRDYRQYA 441 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 +H V+ DD A M + RR+ + PDV+++DGGKGQL Sbjct: 442 IHG--VQDGDDYAAMAQAITRRYKK-------------------HPLPDVLLIDGGKGQL 480 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 S A+ VL +L + N +I +AKG R AG+E + E L L M L+ I +RDE Sbjct: 481 SMAKNVLTELGLLNDTLLIGVAKGEGRKAGLEVLHFIEHEPLDLPMDSKALHLIMNIRDE 540 Query: 537 AHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 AHRFAIT HRK+R K+ + S L+ I G+G R+R LL FG ++ + +S + L + GI Sbjct: 541 AHRFAITAHRKKRDKRRSSSVLEAIPGLGEKRRRDLLNHFGGLQQLLGASQQELEGVNGI 600 Query: 596 SKKIACKIYNHFHK 609 K +A IY H+ Sbjct: 601 GKVMANTIYKVLHE 614 >gi|119897939|ref|YP_933152.1| excinuclease ABC subunit C [Azoarcus sp. BH72] gi|119670352|emb|CAL94265.1| excinuclease ABC subunit C [Azoarcus sp. BH72] Length = 606 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 211/609 (34%), Positives = 317/609 (52%), Gaps = 26/609 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + E PGVY+M+ +VLYVGKA NL++R+ SY + RI M++Q+ + T T Sbjct: 19 TLTEEPGVYRMIGAEDKVLYVGKAKNLKRRVSSYFQRTLLSPRIAMMVAQVQRVDVTATR 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EAL+LE N+IK L PR+NIL RDDKS+PYI +T P L HR + YFGP Sbjct: 79 SEAEALILENNLIKSLAPRYNILFRDDKSYPYIELTGDE-FPQLAYHRGAFAKGARYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQ+TF LR+C +SVF++R+RPCLL QIKRC+GPC G +S+E Y V Sbjct: 138 FPSAWAVRESIQLLQKTFQLRTCENSVFQNRSRPCLLHQIKRCTGPCVGLVSAEDYAADV 197 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 A +FL G + + + M +A D+E+A RD++ AL + + + Sbjct: 198 RLASRFLDGHGTEVIDALTDKMQRAAAALDFEAAGGCRDQIRALQAVLHRQFVDSGKDED 257 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D + L C+ G++ G F + L F+ Q Y + P P Sbjct: 258 VDILAAVEEDGLLCVNIAMVRGGRHLGDRPQFPSGAAACGAEDGLLAFVEQHYGEHPMPA 317 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 +L++ E + + + + P+ R +E A NA + + Sbjct: 318 RLLVNTAVE---AVRETLAEIAEKPAAVVAPRFAVDRGWMEMAEKNARLAIQARARDTGR 374 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 + L+ L P RIE +D SH MG + V VV + +YR++N+ Sbjct: 375 AEQRLEALRDALGLADPPLRIECFDISHTMGEATVASCVVCEAGQMKRGEYRRYNI--AG 432 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 + DD A MR LERR+ ++ E PD++++DGGKGQ++AA G Sbjct: 433 ITPGDDFAAMRQALERRYGKVAAGE--------------GLRPDLILIDGGKGQVAAALG 478 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 +L +L +E+ I +I +AKG R G+E F + E LVL L+ + +RDEAHRF Sbjct: 479 ILAELGLED-IAMIGVAKGEGRKVGLETLVFPDEREGLVLGGGHAALHLVTEIRDEAHRF 537 Query: 541 AITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AIT HR RR K S L++I G+GP R+R LL +FG + + ++ E L ++GI++ + Sbjct: 538 AITGHRARRAKTRVGSKLEDIPGVGPTRRRNLLATFGGLDGVRAATVEDLCRVDGINRTL 597 Query: 600 ACKIYNHFH 608 A +I+ Sbjct: 598 AEQIHQALR 606 >gi|241662613|ref|YP_002980973.1| excinuclease ABC subunit C [Ralstonia pickettii 12D] gi|240864640|gb|ACS62301.1| excinuclease ABC, C subunit [Ralstonia pickettii 12D] Length = 657 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 213/637 (33%), Positives = 329/637 (51%), Gaps = 48/637 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P PGVY+ D+ G VLYVGKA +L+KR+ SY + + RI M+++I I TV Sbjct: 36 RLPNLPGVYRYFDVQGNVLYVGKARDLKKRVSSYFNKTLLSPRIAMMVAKIARIDTTVVR 95 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T +H P + +R ++ + YFGP Sbjct: 96 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-QHAYPRMAYYRGATDRRHQYFGP 154 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV +++ LQ+ F LR+C D+VF +RTRPCLL QI RCSGPC IS+E Y V Sbjct: 155 FPSAHAVRESMQILQKVFRLRTCEDTVFNNRTRPCLLHQIHRCSGPCVQAISAEDYARDV 214 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS----IYN 240 A FL G + + + M + +E A I RD++ ALS + + Sbjct: 215 ANAASFLQGRQDEVMQTLQDKMQRYAESLAFEQAAIVRDQIGALSTVLKQQSVEEVGHAS 274 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT------------------------ 276 +D ++ AC+ G++ G +F Sbjct: 275 DIDILAVAIKGGHACVNLAMVRGGRHLGDKAYFPTHVEEGAAIVGVDVEADSVSAAETSR 334 Query: 277 DSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGE 336 D+E + IL F+ Q Y D+ P +++S T L+ + +Q G ++ + QG Sbjct: 335 DAERMASDILEAFVAQHYLDQFVPPVLVVSHPILATELI-DALAEQAGRRISVVRQPQGG 393 Query: 337 KRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP---KRIEIYDNSHIMGC 393 +R +E A A S ++LS + S Q + + + R+E +D SH G Sbjct: 394 RRAWLEMAEKGAELSLMRRLSEQGSQQARTRALAETIGIDLEDLAALRVECFDISHTAGE 453 Query: 394 SAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP 453 + VV + ++YR++N+ + DD A MR VL RR+ ++++ Sbjct: 454 ATQASCVVFHGHAMQNSEYRRYNIQD--ITPGDDYAAMRQVLTRRYQKIVEQ-------- 503 Query: 454 KKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK 513 P+ P +V++DGGKGQ+ A+ V ++L ++ + ++ +AKG R G+E Sbjct: 504 --AGEDAPNMPTIVLIDGGKGQVEVARQVFEELGLDIGL-LVGVAKGEGRKVGLETLVFA 560 Query: 514 KGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLL 571 G L L L + ++RDEAHRFAIT R +R KA S L+EI GIG R++ L Sbjct: 561 DGRPSLELGQGSAALMLVAQIRDEAHRFAITGMRAKRAKARNTSRLEEIEGIGAKRRQRL 620 Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 L FG ++ + +S + LA++EGIS+ +A +IY H Sbjct: 621 LARFGGLRGVMAASVDELATVEGISQTLAEEIYRQLH 657 >gi|332284705|ref|YP_004416616.1| Protein uvrC [Pusillimonas sp. T7-7] gi|330428658|gb|AEC19992.1| Protein uvrC [Pusillimonas sp. T7-7] Length = 607 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 215/614 (35%), Positives = 328/614 (53%), Gaps = 29/614 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+ LD G VLYVGKA +L+KR+ SY + RI HM++++ + TVT Sbjct: 13 DLPHLPGVYRHLDAEGTVLYVGKARDLKKRVSSYFQKTPSSPRIAHMVARVERLEVTVTR 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IKRLKPR+NIL RDDKS+PY++ + H+ P + +R S++ +G YFGP Sbjct: 73 SEAEALLLENNLIKRLKPRYNILFRDDKSYPYLMFS-GHQTPRIAYYRGSTSGKGRYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + + AV +TI LQR F LR+C DSVF +R+RPCLL+QI RCS PC IS+ Y V Sbjct: 132 YPNAWAVRETIQILQRVFRLRTCEDSVFANRSRPCLLYQIGRCSAPCVNLISAADYQADV 191 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND---SIYNR 241 A +FL G + + I + M+QA+ ++E A + RD++ AL+ + + Sbjct: 192 DRAVQFLDGRANEVMRDIEQRMHQASEALEFEKAAVLRDQVGALAKVLQQQSMEKVGNDD 251 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 +D ++ C+ G++ G FF + + A +L+ F+ Q Y D P Sbjct: 252 VDVIAVASAGGRVCVNLAMIRGGRHLGDKPFFPTHTLDDSPADVLAAFVAQHYLDSGMPA 311 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 ++ S + L+ +Q G + ++ + QG ++ +EQA+ NA + + L+ + Sbjct: 312 VLVCSHALPDPDLI-KLLSEQTGVRARVLIRPQGLRKIWLEQAVKNAELALARLLTESSA 370 Query: 362 HQMILKDFTKKFALPHIP-----KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + IE +D SH G + VV + + YR++N Sbjct: 371 RVARSLALATALDMDTDEAALDAMHIECFDISHTAGEATQASCVVYKHHDMQPSLYRRYN 430 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + DD A MR VL RRFS++ + P VV++DGGKGQ+ Sbjct: 431 I--AGIMPGDDYAAMRQVLTRRFSRVADGQ--------------AEMPGVVLIDGGKGQV 474 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEALVLNMRDPILYFIQRLRD 535 A+ V +L ++ R TI+ +AKG R G+E FV E + L + L + ++RD Sbjct: 475 EVARQVFVELGLDTR-TIVGVAKGEGRKVGLETLVFVDGREPVALGIESAALMLVAQIRD 533 Query: 536 EAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFAIT R +R KA S L+EI GIG R++ LL FG + +S + L S++G Sbjct: 534 EAHRFAITGMRAQRAKARNVSRLEEIEGIGARRRQKLLARFGGFTGVVDASIDDLRSVDG 593 Query: 595 ISKKIACKIYNHFH 608 IS ++A +IY Sbjct: 594 ISDELAERIYQALR 607 >gi|146328977|ref|YP_001209225.1| excinuclease ABC, C subunit [Dichelobacter nodosus VCS1703A] gi|229558026|sp|A5EW70|UVRC_DICNV RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|146232447|gb|ABQ13425.1| excinuclease ABC, C subunit [Dichelobacter nodosus VCS1703A] Length = 607 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 217/608 (35%), Positives = 327/608 (53%), Gaps = 23/608 (3%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 GVYQM D G VLYVGKA NL++R+ Y + + ++ + +I+ T T TE Sbjct: 19 TLSGVYQMRDQNGTVLYVGKAKNLRQRLSHYFQKTGLSVKTRALMRAVYDIQTTSTPTEA 78 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EALLLE N+IK+ +P+FNILLRDDKS+PYI ++ +H P L+ +R + +FGP+ + Sbjct: 79 EALLLENNLIKQYQPKFNILLRDDKSYPYICLS-QHDFPRLFLYRGARKNG-DFFGPYPN 136 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 V + + LQ+ F LR C DS F++R+RPCL +QIKRC PC G+IS+E Y + V A Sbjct: 137 VQSAHHALAILQKVFRLRPCLDSFFKNRSRPCLQYQIKRCYAPCVGKISAEMYAQTVQHA 196 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND--SIYNRMDCF 245 + FL+G + +L + + +M QA+ + YE A I RD+++ L IQ +D Sbjct: 197 RDFLTGNSEHLLQTLTEHMLQASAAQQYERAAIVRDQISELRTIQQKQSMVVYAANVDVL 256 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILL 305 ++ AC+Q FF G + + FF K IL F+ QFY +P P I+L Sbjct: 257 AVATAYGKACVQVLFFRDGHSVTSQAFFPKLPELLPAGAILQAFIGQFYHQRPVPSQIVL 316 Query: 306 SEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365 SE + + + + V +T + ++K + NA + L+ ++S Sbjct: 317 SEALPDMDAVSEFLSQMSAHTVTLTTQPRAIRKKWLRMTQENARLNLRLHLAQKLSMHER 376 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 K + F +P+R+E D SH+ G V VV G VK+ YR++ N + Sbjct: 377 FKALAQAFDWQKMPQRLECVDISHMQGEYTVASCVVFDRRGAVKSDYRRY--KINGITGG 434 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD A M+ V++RRF++L K E PDV +DGG+GQL A V ++ Sbjct: 435 DDYAAMKQVIKRRFARLKKGE--------------GVMPDVFFVDGGRGQLQQAIAVFEE 480 Query: 486 LNVENRITIISIAKGPKRSAGMEKF-FVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544 + +E + +I +AKG R AG+E+F F + L + I +RDEAHRFAI+ Sbjct: 481 MQIEG-VQLIGVAKGEGRKAGLEQFWFPHENRPRTLPADSQAMQLIIHIRDEAHRFAISA 539 Query: 545 HRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 HR+ R KK S L+EI IG R++ LLQ FG + + ++SPE + + GIS K+A +I Sbjct: 540 HRRGRDKKVRVSLLEEIPNIGRKRRQALLQHFGNLAGLMQASPEDITRVPGISVKLAAQI 599 Query: 604 YNHFHKNT 611 Y H+ Sbjct: 600 YAALHQGE 607 >gi|162420815|ref|YP_001606522.1| excinuclease ABC subunit C [Yersinia pestis Angola] gi|162353630|gb|ABX87578.1| UvrABC system, C protein [Yersinia pestis Angola] Length = 617 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 214/618 (34%), Positives = 336/618 (54%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D AG V+YVGKA +L+KR+ SY + + ++ I I TV Sbjct: 18 LKTVTSQPGVYRMYDTAGTVIYVGKAKDLKKRLTSYFRAQVANRKTETLVKNIAQIDVTV 77 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P I ++ P L HR + +G YF Sbjct: 78 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPLIFLSADE-HPRLAVHRGAKHEKGEYF 136 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RCSGPC +S E+Y Sbjct: 137 GPFPNSYAVRETLALLQKLFPVRQCENSVYRNRSRPCLQYQIGRCSGPCVEGLVSEEEYQ 196 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 V + FLSG + + ++ M +A+ + +E A RD++ A+ + + Sbjct: 197 RQVDYVRLFLSGKDQQVLTQLITRMEEASQQLHFEDAARIRDQIQAVRRVTEQQFVSGDS 256 Query: 242 M--DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295 D + + LAC+ F G+ G+ ++F K + + ++++ F+ QFY Sbjct: 257 EDLDVIGVAFDAGLACVHVLFIRLGKVLGSRSYFPKVPAGTELSEVVQTFVGQFYLQGSQ 316 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL E LL S + G K++I +G++ + ++ A NA + + Sbjct: 317 GRTLPGEILLDFTLTEKDLLASSLSELAGRKIQIQSRPRGDRARYLKLARTNASTALITR 376 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + +K+ K L R+E +D SH MG V VV N V+++YR++ Sbjct: 377 LSQQSTIHQRMKELAKVLKLD-EINRMECFDISHTMGEQTVASCVVFDANCPVRSEYRRY 435 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + + DD A M VL+RR+ + + +++ PDV+ +DGGKGQ Sbjct: 436 NI--SGITPGDDYAAMAQVLKRRYGKALDDQK---------------IPDVIFIDGGKGQ 478 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 LS A V LNV + + ++ +AKG R AG+E F+ +GE L P L+ IQ Sbjct: 479 LSQAFDVFASLNVPWDKQKPLLVGVAKGSDRKAGLETLFLASEGEGFSLPPDSPALHLIQ 538 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RD++H AIT HR+RR K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 539 HIRDDSHNHAITGHRQRRSKVKNTSALEMIEGVGPKRRQVLLKYMGGLQPLFNASVEEIA 598 Query: 591 SIEGISKKIACKIYNHFH 608 + GIS+ +A KI+N Sbjct: 599 KVPGISQALAEKIHNALK 616 >gi|158313894|ref|YP_001506402.1| excinuclease ABC subunit C [Frankia sp. EAN1pec] gi|229558031|sp|A8KYR0|UVRC_FRASN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|158109299|gb|ABW11496.1| excinuclease ABC, C subunit [Frankia sp. EAN1pec] Length = 692 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 197/664 (29%), Positives = 311/664 (46%), Gaps = 61/664 (9%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +PE PGVY+ D GRV+YVGKA +L+ R+ +Y + R HM++ ++ +TV Sbjct: 13 SIPETPGVYRFRDEHGRVIYVGKAKSLRARLANYFADIHTLHPRTQHMVTTAGSVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE IK PRFN+ RDDKS+P + +T + P L R YFG Sbjct: 73 STEVEALQLEYTWIKEFDPRFNVRYRDDKSYPSLAVTLYEEFPRLQVMRGPKRRGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P+A A+ +T++ L R F R+C+ VF+ RPCLL I RCS PC G + ++ + Sbjct: 133 PYAHAWAIRETLDLLLRVFPARTCSSGVFKRAGQVGRPCLLGYIDRCSAPCVGRVDADAH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + V + F+SG ++ R M A ++YE A RD + AL + Sbjct: 193 RQIVDDFCDFMSGQTGRYLRRLEREMRAAAEAQEYERAARLRDDIGALRRAVEKQAVVLP 252 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD- 296 D + ++ A +Q + G+ RG + + + T A ++ FL Q Y D Sbjct: 253 DGTDADVIAFAQDELEAAVQIFYVRGGRVRGQRGWVVDKLEDVTTADLVEQFLTQEYLDG 312 Query: 297 ------------------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVP 332 P IL+ E + + + G +V + VP Sbjct: 313 VRPAGTAGTADTADTADTADPAPAAQIPREILVPELPPDAEAVAELLERARGARVDLRVP 372 Query: 333 KQGEKRKIIEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNS 388 ++G+KR ++E NA ++ T + + L D + LP P RIE +D S Sbjct: 373 RRGDKRTLMETVERNAKQAFTLHRTKRAGDLTARSRALADLQEALELPDAPLRIECFDVS 432 Query: 389 HIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE- 447 + G V MVV + K++YR+F++ V QDD A MR + RRFS+ + Sbjct: 433 NTQGTDVVASMVVFEDGLPRKSEYRRFSIRG--VDGQDDVASMRETVHRRFSRYLAERAR 490 Query: 448 -------------NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE---NR 491 + + F P++V++DGG Q++AA L +L +E Sbjct: 491 TGELEEYPGAPTGDDEAPETGRPRRFAYPPNLVVVDGGPPQVAAAARALDELGIESGPGG 550 Query: 492 ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK 551 + + +AK + E + + E ++L LY +QR+RDEAHRFAIT HR++R Sbjct: 551 VALCGLAKRLE-----EVWLPDQDEPVILPRTSEALYLLQRVRDEAHRFAITYHRQKRST 605 Query: 552 AA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 + S LD++ G+G R++ LL+ FG+V + + E +A + GI + A I ++ Sbjct: 606 SMVASALDDVPGLGETRRKALLRHFGSVAKVRAAGAEEIAQVPGIGPRTAEAIVAALARS 665 Query: 611 TSHT 614 T Sbjct: 666 APGT 669 >gi|227488848|ref|ZP_03919164.1| excinuclease ABC subunit C [Corynebacterium glucuronolyticum ATCC 51867] gi|227542157|ref|ZP_03972206.1| excinuclease ABC subunit C [Corynebacterium glucuronolyticum ATCC 51866] gi|227091270|gb|EEI26582.1| excinuclease ABC subunit C [Corynebacterium glucuronolyticum ATCC 51867] gi|227181986|gb|EEI62958.1| excinuclease ABC subunit C [Corynebacterium glucuronolyticum ATCC 51866] Length = 682 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 191/655 (29%), Positives = 317/655 (48%), Gaps = 53/655 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +PE PGVY+ D V+YVGKA NL+ R+ +Y + R M++ ++ +TV Sbjct: 15 TIPEEPGVYKFRDAHKTVIYVGKAKNLRARLANYFQPLQDLHPRTRQMVTTGASVEWTVV 74 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +EVEAL LE IK+ P+FN++ RDDK++P + ++ K + P + +R YFG Sbjct: 75 ASEVEALQLEYTWIKKFDPKFNVMYRDDKTYPMLAVSLKEQYPRAFLYRGPRRKGVRYFG 134 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRT---RPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F LR+C+ VF + RPCLL I +CS PC G +S E++ Sbjct: 135 PYSHAWAIRETLDLLTRVFPLRTCSKGVFNRQRQLERPCLLGYIDKCSAPCVGRVSVEEH 194 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E V+ F++G + + R MNQA + D+E A RD L A+S ++ Sbjct: 195 REIVNGFCSFMAGQTDAVTRSLKREMNQAAEELDFEKAARLRDNLGAISKAMERQSVVFG 254 Query: 241 R---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D + ++ A +Q G+ RG + ++ + + A+++ FL QFY D Sbjct: 255 DGTDADLIAFVTDELEAAVQIFHVRGGRIRGQRGWVVEKEGDEPIAELMQDFLMQFYNDA 314 Query: 298 P----------------------------CPENILLSEEAEETSLLEISFFKQYGYKVKI 329 P+ +L+ E + ++ G ++ + Sbjct: 315 SLAKQETAVELERRGVDQLSHTEVSHNSVVPKEVLVQELPLDVEAVQEQLEHLRGAQISL 374 Query: 330 TVPKQGEKRKIIEQALINAHRSHTQKLSTE----ISHQMILKDFTKKFALPHIPKRIEIY 385 VP++GEKR+++E NA + Q + ++ + + P RIE Sbjct: 375 RVPQRGEKRELMEVVERNAKEALKQHKLKRVGDLTARSAAIEQLKEYLEMDEAPLRIECT 434 Query: 386 DNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN 445 D SHI G V +VV + K+ YR++ + +D A + V RRF + ++ Sbjct: 435 DISHIQGTDVVASLVVFEDGLPKKSDYRRYIIRDE---PGNDVASIAEVTRRRFKRHNED 491 Query: 446 E----ENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGP 501 + E F + F P + I+DGG Q+ AA V ++L + + + +I +AK Sbjct: 492 KRAMPEEDEFTDVEATKRFAYPPQLFIVDGGLPQVHAAAEVFEELGITD-VKLIGLAKRL 550 Query: 502 KRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEI 560 + E + + L+L LY +Q +RDEAHRFAIT HR++R K S LD I Sbjct: 551 E-----EVWIPDDDDPLILPRSSEGLYLLQHVRDEAHRFAITFHRQKRSKRLRVSELDSI 605 Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615 G+G RK L++ FG+VK + +S + + ++GI K+A I++ H +T P Sbjct: 606 RGLGAQRKTDLVKHFGSVKRLKEASLDQIEEVKGIGPKLAESIFSALHPDTGSRP 660 >gi|109898764|ref|YP_662019.1| excinuclease ABC subunit C [Pseudoalteromonas atlantica T6c] gi|119367684|sp|Q15T23|UVRC_PSEA6 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|109701045|gb|ABG40965.1| excinuclease ABC, C subunit [Pseudoalteromonas atlantica T6c] Length = 608 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 205/614 (33%), Positives = 329/614 (53%), Gaps = 25/614 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M + V+YVGKA NL+ R+ SY S + + ++ QI ++ TV Sbjct: 13 LKDLTNQPGVYRMYNHKQDVIYVGKAKNLKNRVSSYFRSQVDSIKTQSLVKQIAHMDVTV 72 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +E EA +LE N IK+ KPR+N+LLRDDKS+P+I ++ H+ P L HR +G YF Sbjct: 73 VHSEAEAFILENNFIKKYKPRYNVLLRDDKSYPFIFLS-DHQHPRLANHRGPKKRKGEYF 131 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GP+ S AV +++ ++QR F +R C DS +R R+RPCL +Q++RC+GPC +S E Y Sbjct: 132 GPYPSAWAVRESLRTMQRIFPIRQCEDSYYRARSRPCLQYQLQRCAGPCVEGLVSDEDYQ 191 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 V A+ FL G N + + + ++M +A+ +E+A +RD+++AL+ +Q N+ Sbjct: 192 AQVDLARMFLKGKNKQVIDSLVQHMERASTDLRFEAAARYRDQISALNKVQEQQWVSGNQ 251 Query: 242 --MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--DK 297 MD F + +A IQ F + G+ +F+ K +E+T+ ++ F+ QFY +K Sbjct: 252 EEMDVFGFAYRNGIASIQGLFIRDNKLLGSKSFYPKVPAEATDEEVFQSFILQFYLAGNK 311 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P+ I+ E E +E K+ G +++ + EKR+ ++ A NA + K Sbjct: 312 VIPKQIVTPLELNEQGAIEELLTKEAGRRIQFYRGARDEKRRYLDLANTNAENALIAKQG 371 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + S + K +R+E +D SH G V VV G K YR+FN+ Sbjct: 372 QQKSVFARYTELEKILEFEQPIQRMECFDISHTSGQLTVASCVVFNREGPFKADYRRFNI 431 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + DD A M L RR+ + + + PD++ +DGGKGQL+ Sbjct: 432 EG--ITPGDDYAAMAQALARRYRDVKDDSK---------------IPDILFIDGGKGQLT 474 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDE 536 A+ + E + +I +AKG R AG+E + + L+ L+ IQ +RDE Sbjct: 475 QAEDYFEDWKHEKKPLLIGVAKGSSRKAGLETLILAGNHATIPLSGDSIALHLIQHIRDE 534 Query: 537 AHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 +HRFAIT HR RR+K S L+ I G+G R++ LL+ G ++ I ++S +A++ GI Sbjct: 535 SHRFAITGHRARRQKDKKTSKLESIPGVGAKRRQSLLKYMGGLQGILQASRSEIANVPGI 594 Query: 596 SKKIACKIYNHFHK 609 S ++A IY+H H Sbjct: 595 SAELADTIYDHIHN 608 >gi|330469171|ref|YP_004406914.1| excinuclease ABC subunit C [Verrucosispora maris AB-18-032] gi|328812142|gb|AEB46314.1| excinuclease abc, c subunit [Verrucosispora maris AB-18-032] Length = 643 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 189/640 (29%), Positives = 309/640 (48%), Gaps = 41/640 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVT 63 +PE PGVY+ D GRV+YVGKA NL+ R+ SY R M++ ++ + Sbjct: 13 TIPESPGVYRFRDGTGRVIYVGKAKNLRSRLNSYFADLLGLHDRTRQMVTTAESVDWVTV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE IK+ PRFN+ RDDKS+PY+ +T + P L R + YFG Sbjct: 73 GTEVEALQLEYTWIKQYDPRFNVRYRDDKSYPYLAVTLDEEYPRLQVMRGAKRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F R+C+ VF+ RPCLL I +CS PC G ++++++ Sbjct: 133 PYSHAWAIRETLDLLLRVFPARTCSAGVFKRAGQVGRPCLLGYIGKCSAPCVGSVTAQEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E V F++G ++ K+ R M QA+ + ++E A RD +AAL + Sbjct: 193 REIVDGFCDFMAGRTDSMVRKLEREMTQASAELEFERAARLRDDVAALRRAMEKQTVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294 D + + A +Q G+ RG + ++ + T ++ +F Q Y Sbjct: 253 DGTDADVVAFADDPLEAAVQVFHVRGGRVRGQRGWVVEKTEDLTTGDLVHHFCTQVYGGE 312 Query: 295 -TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 + P +L+ E + L G +V + VP++G+KR ++E NA + Sbjct: 313 HGETDVPRELLVPELPADAEALADWLATHRGSRVSLRVPQRGDKRALLETVERNAKDALA 372 Query: 354 QKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 + + L + ++ + P RIE +D S I G V MVV + K Sbjct: 373 RHKLKRAGDLTTRSKALDEISEALGMRTAPLRIECFDVSQIQGSDVVASMVVFEDGLPRK 432 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLI---------------KNEENLNFHPK 454 ++YR+F + DD + M VL RRF++ + + Sbjct: 433 SEYRRFIVRG----ATDDLSAMSEVLRRRFARYLDVRAETGEIGEETAADPDRPGVDPTT 488 Query: 455 KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK 514 + F P +V++DGG Q++AA L +L +++ + + +AK + E + Sbjct: 489 GRPRKFAYPPQLVVVDGGAPQVAAAAQALAELGIDD-VALCGLAKRLE-----EVWLPDD 542 Query: 515 GEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQ 573 ++L LY +QR+RDEAHRFAIT HR+RR K S LD+I G+G +R++ LL+ Sbjct: 543 DFPVILPRTSEGLYLLQRVRDEAHRFAITFHRQRRSKRMTTSALDDIPGLGDVRRKALLR 602 Query: 574 SFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 FG++K +S ++ E + + G+ ++ A I TS Sbjct: 603 HFGSLKRLSAATVEEITEVPGVGRRTAEAILAALAPATSS 642 >gi|161525331|ref|YP_001580343.1| excinuclease ABC subunit C [Burkholderia multivorans ATCC 17616] gi|189349932|ref|YP_001945560.1| excinuclease ABC subunit C [Burkholderia multivorans ATCC 17616] gi|229558024|sp|A9ADC9|UVRC_BURM1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|160342760|gb|ABX15846.1| excinuclease ABC, C subunit [Burkholderia multivorans ATCC 17616] gi|189333954|dbj|BAG43024.1| excinuclease ABC subunit C [Burkholderia multivorans ATCC 17616] Length = 674 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 214/661 (32%), Positives = 329/661 (49%), Gaps = 62/661 (9%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D AG VLYVGKA +L+KR+ SY + RI M+++I I TVT Sbjct: 19 QLPHMPGVYRYYDAAGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H+ P + +R + Q YFGP Sbjct: 79 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-SHRFPRMAYYRGAVDKQNQYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RC+ PC G IS+E Y V Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVGAISAEDYAVDV 197 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 A +FL G + +++ + M+ + +E A R+++++L+ + + Sbjct: 198 SNAARFLLGRQSEVMKELEQKMHAFAAELKFEQAAAVRNQMSSLATVLHQQAIEVGSDSD 257 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS-----------ESTNAQILSYFL 290 D ++ C+ G++ G +F + T+A + Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPTHVESALTLAEGGLGDDTDADAVEAPD 317 Query: 291 -----------------------------RQFYTDKPCPENILLSEEAEETSLLEISFFK 321 Q Y P +++S LLE+ + Sbjct: 318 VPAEAPVGEPGSARDTTASIEAEVLDAFIAQHYLGNRVPPVLVVSHAPASRDLLEL-LSE 376 Query: 322 QYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP-- 379 Q G+KV + QG++R + A NA + + LS + S Q + + L Sbjct: 377 QAGHKVSLVRQPQGQRRAWLSMAEQNAQIALARLLSEQGSQQARTRALAETLGLECDDLA 436 Query: 380 -KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERR 438 RIE +D SH MG + VV + +YR++N+ + DD A MR VL RR Sbjct: 437 TLRIECFDISHTMGEATQASCVVYHHHKMQSGEYRRYNI--TGITPGDDYAAMRQVLTRR 494 Query: 439 FSQLIK---------NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE 489 + ++++ + ++ +Q + P++V++DGGKGQ+ A+ V +L ++ Sbjct: 495 YEKMVEQAAQAAAADDAAGIDGESTRQAEASSLLPNIVLIDGGKGQVEIARQVFTELGLD 554 Query: 490 NRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKR 548 + ++ +AKG R G+E G L L L + ++RDEAHRFAIT R + Sbjct: 555 TSM-LVGVAKGEGRKVGLETLVFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAK 613 Query: 549 RKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 R KA S L+E+ G+G R++ LL FG ++ + +S E LAS++GIS +A +IY Sbjct: 614 RAKARQTSRLEELEGVGAKRRQRLLARFGGLRGVVAASVEELASVDGISHALAEQIYKQL 673 Query: 608 H 608 H Sbjct: 674 H 674 >gi|239940412|ref|ZP_04692349.1| excinuclease ABC subunit C [Streptomyces roseosporus NRRL 15998] gi|239986893|ref|ZP_04707557.1| excinuclease ABC subunit C [Streptomyces roseosporus NRRL 11379] gi|291443843|ref|ZP_06583233.1| excinuclease ABC subunit C [Streptomyces roseosporus NRRL 15998] gi|291346790|gb|EFE73694.1| excinuclease ABC subunit C [Streptomyces roseosporus NRRL 15998] Length = 686 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 183/655 (27%), Positives = 319/655 (48%), Gaps = 61/655 (9%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 Q+P+ PGVY+ D RV+YVGKA NL++R+ +Y N R M++ ++ + Sbjct: 10 KPGQIPDSPGVYKFRDEHRRVIYVGKAKNLRQRVANYFQDLANLHPRTRTMVTTAASVEW 69 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TEVEAL LE + IK PRFN+ RDDKS+PY+ +T + P + R + Sbjct: 70 TVVSTEVEALQLEYSWIKEFDPRFNVKYRDDKSYPYLAVTLNEEFPRVQVMRGAKKKGVR 129 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP+ A+ +T++ + R F +R+C+ VF++ RPCLL I +CS PC G ++ Sbjct: 130 YFGPYGHAWAIRETVDLMLRVFPVRTCSAGVFKNAARTGRPCLLGYIGKCSAPCVGRVTP 189 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E++ E + F++G ++ ++M QA + +YE A RD AL + Sbjct: 190 EEHRELAEDFCDFMAGRTGTYIRRLEKDMMQAAEEMEYERAARLRDDAEALKRAMEKSAV 249 Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D ++ ++ A +Q G+ RG + + ++ + L+Q Y Sbjct: 250 VLADATDADLIAVAEDELEAALQIFHVRGGRVRGQRGWVTDKVEAVDTSGLVEHALQQLY 309 Query: 295 TDK---PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 ++ P+ +L+ E+T + ++ G +V + +P++G+K+ ++ NA ++ Sbjct: 310 GEERGDAVPKEVLVPALPEDTEAVSQWLAERRGSQVSLRIPQRGDKKDLMATVQRNAQQA 369 Query: 352 HTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 + S L++ + L P RIE YD SH+ G V MVV + Sbjct: 370 LGLHKTKRASDLTTRSRALEEIAEALGLDTAPLRIECYDISHLQGDDVVASMVVFEDGLA 429 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL------------------ 449 K++YR+F + + QDD M V+ RRF + ++ +E Sbjct: 430 RKSEYRRFQIKG--FEGQDDVRSMHEVIGRRFKRYLQEKERTGEWEEQPPDAAADAASPA 487 Query: 450 --------------------NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE 489 + F P +V++DGG+ Q++AA+ L +L ++ Sbjct: 488 AGPAPTGPVPAVGPTAEDGEPREDDGRPKRFAYPPQLVVVDGGQPQVAAAKRALDELGID 547 Query: 490 NRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR 549 + I + +AK + E + + +VL LY +QR+RDEAHRFAIT R +R Sbjct: 548 D-IAVCGLAKRLE-----EVWLPDDDDPVVLPRSSEGLYLLQRVRDEAHRFAITYQRAKR 601 Query: 550 -KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 K+ SPLD+++G+G RK+ L++ FG+VK + +++ + + + GI ++ A + Sbjct: 602 AKRIRTSPLDDVSGLGETRKQALIKHFGSVKKLRQATIDEICEVPGIGRRTAESV 656 >gi|92114255|ref|YP_574183.1| excinuclease ABC subunit C [Chromohalobacter salexigens DSM 3043] gi|119367641|sp|Q1QVM4|UVRC_CHRSD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|91797345|gb|ABE59484.1| Excinuclease ABC subunit C [Chromohalobacter salexigens DSM 3043] Length = 604 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 208/613 (33%), Positives = 327/613 (53%), Gaps = 25/613 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + E PGVY+MLD G VLYVGKA L+ R+ SY + ++S+I +I+ T+ Sbjct: 9 LKTVSESPGVYRMLDAEGNVLYVGKAKRLKARLASYFRGA-LNAKTQALVSRIEDIQVTI 67 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSY 121 T TE EALLLE +IK +P +NILLRDDKS+P+I ++D+H PAL R G Y Sbjct: 68 TRTETEALLLEQTLIKEQRPPYNILLRDDKSYPFIFVSDRHPYPALEFKRARQKRGDGRY 127 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 GPF S AV ++++ +Q+ F +R+C DSVF HRTRPCL +QI+RCS PC I E+Y Sbjct: 128 LGPFPSTTAVRESLSLMQKIFRIRNCEDSVFAHRTRPCLQYQIQRCSAPCVDYIGREEYQ 187 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + A L G + + ++ R+M A+ D+E A RD++ L +Q Sbjct: 188 RDIDHAIMCLEGRSEQVTAQLTRDMETASQALDFEEAARLRDQIQQLRRLQERQIVDTGD 247 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--TDK 297 D F+L CI G+ G + + T +L F+ +Y ++ Sbjct: 248 GDADIFALAERPGGLCISALAVRGGRMLGARHHMPQNGLDLTAEALLGEFISHYYLGHER 307 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P ++ + ++ +++ + ++ G ++++ +G + + + A NA + T +L+ Sbjct: 308 EIPAEVITALPLADSDVIQAALSERAGKRIRLAHQVRGHRAQWLRLAETNAEQHLTTQLA 367 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 L P R+E +D SH G + V VV ++G VK+ YR+FN+ Sbjct: 368 NRSQLAKRFASLRDAMQLQETPTRLECFDISHSHGEATVASCVVFDQDGPVKSDYRRFNI 427 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 V DD A MR L RR+ +L +++ L P ++I+DGGKGQL+ Sbjct: 428 EG--VAAGDDYAAMRQALTRRYKRLTQDDSKL--------------PGILIVDGGKGQLN 471 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDE 536 A+ VL+ + + ++ +AKG R G+E F++ +L L+ P L+ IQ +RDE Sbjct: 472 MAREVLEDVGITGT-HLLGVAKGTTRKPGLETLFLETVDNSLALDSASPGLHLIQHIRDE 530 Query: 537 AHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 AHRFAIT HR++R K S L +I GIGP R+R LL+ FG ++ + ++S + LA + GI Sbjct: 531 AHRFAITGHRQQRDKQRRTSTLQDIPGIGPKRRRELLRFFGGLQGVRQASRDELARVPGI 590 Query: 596 SKKIACKIYNHFH 608 S ++A I+ H Sbjct: 591 SAQMATTIHQALH 603 >gi|302873283|ref|YP_003841916.1| excinuclease ABC, C subunit [Clostridium cellulovorans 743B] gi|307688550|ref|ZP_07630996.1| excinuclease ABC subunit C [Clostridium cellulovorans 743B] gi|302576140|gb|ADL50152.1| excinuclease ABC, C subunit [Clostridium cellulovorans 743B] Length = 625 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 201/624 (32%), Positives = 327/624 (52%), Gaps = 19/624 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 + +P+ PGVY M + G ++YVGKA L+ R++ Y S NH+ ++ M+ I + Sbjct: 7 QLKILPDKPGVYLMKNSLGEIIYVGKAKILKNRVRQYFQNSKNHSEKVRTMVKHIAEFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK+ KPR+NILL+DDK +P + IT P ++ R+ Sbjct: 67 IVTDSEIEALVLECNLIKKHKPRYNILLKDDKQYPMLKITVNEDFPRIFITRNVKKDGAK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178 Y GP+ ++ AV +T+ ++++ F LR+C + + +RPCL + I C+ PC+ I+ E Sbjct: 127 YLGPYTNISAVYETLETIKQLFPLRTCRLDIKAGKIASRPCLNYHIGLCNAPCSNHITKE 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 Y E + E LSG + +L + + MN + ++E A +R++L A+ +Q Sbjct: 187 AYGEMIKEIVDLLSGKDISLVKDLKEKMNISAEALEFEKAAEYRNKLIAIEKVQEKQKMA 246 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D L + A +Q F G+ G FFL+ N+ I++ F+ FY Sbjct: 247 TKRFEDEDFIHLAKDDKDAVVQVFFVREGKVIGREHFFLENVVSEENSAIIAEFISAFYG 306 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRS 351 + E E+ LLE + G+KV I +P++GEK+ + NA + Sbjct: 307 GTAFIPKYIYVPEIEDLELLEQWLTMKRGFKVSIKIPQKGEKKDTLTMVQKNAVITLEQF 366 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 + + + ++ +L++ + AL IP RIE YD S+IMG +VG MV E + Sbjct: 367 KQKLIKEKEAYTNVLEELAEILALGDIPHRIEAYDISNIMGVDSVGAMVAFEEGKPKNSD 426 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP-KKQEYSFPSWPDVVILD 470 YR+F + V +D MR +L RRF + ++ E L + F +PD++++D Sbjct: 427 YRRFKIKT--VYGANDYDSMREILTRRFKRGLEEIEALTSSEIALEAGKFFVFPDLILMD 484 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ++ A VL++L + I + + K + E +VL PI++FI Sbjct: 485 GGKGQVNVALEVLRELKI--NIPVAGLVKDNNHKTRG---IIYDNEEIVLKSSSPIMHFI 539 Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DE HRFAIT HR R K+A S LD+I GIG R+R LL FG+++ I ++ E L Sbjct: 540 TRIQDEVHRFAITYHRSLRDKRAIKSVLDDIKGIGEKRRRNLLMRFGSIENIKNATLEEL 599 Query: 590 ASIEGISKKIACKIYNHFHKNTSH 613 A+ + K+ A +I + F K Sbjct: 600 ATTPSMDKRSAQQIKDFFKKLEEE 623 >gi|254495967|ref|ZP_05108875.1| excinuclease ABC subunit [Legionella drancourtii LLAP12] gi|254354845|gb|EET13472.1| excinuclease ABC subunit [Legionella drancourtii LLAP12] Length = 620 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 213/620 (34%), Positives = 343/620 (55%), Gaps = 34/620 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P PG+Y+MLD G VLYVGKA NL+KR+ SY + N + ++SQI +I +VT Sbjct: 16 KLPNEPGIYRMLDQEGTVLYVGKAANLKKRVTSYFNKQNTGVKTRSLVSQIASIEISVTR 75 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI-QGSYFG 123 +E EALLLE+N+IK L+P++N+LLRDDKS+PYI +++ P + +R G++FG Sbjct: 76 SETEALLLESNLIKALRPKYNVLLRDDKSYPYIHLSEHPDFPRIESYRSKKKPLAGNFFG 135 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ SV AV++TI ++Q+ F +R+C DS F R+RPCL +QIKRC+ PC I+S++Y Sbjct: 136 PYPSVTAVKETIVTIQKVFKIRNCRDSYFNARSRPCLQYQIKRCTAPCVHYITSDEYQRS 195 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNR 241 V +A +FL G + + +++A+ M +A L ++E A + RD++ L +Q + Sbjct: 196 VQDAMRFLQGKSQLILDELAKRMEEAVLNLNFEEAAMLRDQIKNLRLVQEQQGMMQLSGD 255 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFL---------KTDSESTNAQILSYFLRQ 292 D ++ + AC+Q G+ + +FF + + Q F+ Sbjct: 256 ADAIAIEVSPGFACVQCVTIREGKILASQSFFPSVPPNGLEEEPGLDDLWQQTFDAFVSF 315 Query: 293 FYTDKP--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR 350 +Y P P I+ L+ + +Q G KI V + K + ++ AL N Sbjct: 316 YYLGTPERIPPLIITDHALPTHQSLQEALTQQRGKSCKIQVSPRAAKSRWMDFALNNLRV 375 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + + ++ + + + + AL R+E +D SH G + + VV G + Sbjct: 376 AIAEYVNKHSTMRSRFHELERFLALTKPIARMECFDISHTQGEATIASCVVFDSEGPNPS 435 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YR+FN+ + DD A M + RRF +L++ + S PD++I+D Sbjct: 436 AYRRFNIEG--ITPGDDYAAMEQAITRRFKRLVEAQ---------------SLPDILIID 478 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYF 529 GGKGQ++ AQ VL LNV +T++ +AKGP R AG EK V + + L L+ Sbjct: 479 GGKGQVTIAQRVLASLNVTT-VTLLGVAKGPSRKAGWEKLILVHEAREVTLPDDSKALHL 537 Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 +Q +RDEAHRFAIT HRK+R KK S L++I G+G R++ LL FG ++ ++++ E Sbjct: 538 LQHIRDEAHRFAITAHRKKRQKKRLESTLEDIEGVGAKRRQALLHRFGGLRELAKAPLEE 597 Query: 589 LASIEGISKKIACKIYNHFH 608 +A ++GIS+ +A +I+ HFH Sbjct: 598 IAKVQGISEHLAQRIFQHFH 617 >gi|238060146|ref|ZP_04604855.1| excinuclease ABC, C subunit [Micromonospora sp. ATCC 39149] gi|237881957|gb|EEP70785.1| excinuclease ABC, C subunit [Micromonospora sp. ATCC 39149] Length = 671 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 186/642 (28%), Positives = 305/642 (47%), Gaps = 41/642 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVT 63 +PE PGVY+ D GRV+YVGKA NL+ R+ SY R M++ ++ + Sbjct: 23 TIPEAPGVYRFRDGTGRVIYVGKAKNLRSRLNSYFADLWGLHQRTQQMVTTAESVDWVTV 82 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE IK+ PRFN+ RDDKS+PY+ +T + P L R + YFG Sbjct: 83 GTEVEALQLEYTWIKQYDPRFNVRYRDDKSYPYLAVTLDEEFPRLQVMRGAKRKGVRYFG 142 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F R+C+ VF+ RPCLL I +CS PC G +++E++ Sbjct: 143 PYSHAWAIRETLDLLLRVFPARTCSAGVFKRAGQVGRPCLLGYIGKCSAPCVGSVTAEEH 202 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + V F++G + ++ R M +A+ ++E A RD +AAL + Sbjct: 203 RDIVDGFCDFMAGRTDTMVRRLEREMTEASEALEFEKAARLRDDVAALRRAMEKQTVVLG 262 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294 D + + A +Q G+ RG + ++ E T ++ +F Q Y Sbjct: 263 DGTDADVVAFADDPLEAAVQVFHVRDGRVRGQRGWVVEKTEELTPGDLVHHFCTQVYGGE 322 Query: 295 -TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 + P +L+ + L + G +V + VP++G+KR ++E NA + Sbjct: 323 RGEADVPRELLVPALPADADALADWLTGRRGSRVSLRVPQRGDKRSLLETVERNAKDALA 382 Query: 354 QKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 + S L + + + P RIE +D S I G V MVV + K Sbjct: 383 RHKLKRGSDLTIRGKALDEISDALGMRTSPLRIECFDVSQIQGTDVVASMVVFEDGLPRK 442 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLI---------------KNEENLNFHPK 454 ++YR+F + DD + M VL RRF++ + + Sbjct: 443 SEYRRFVIRG----ATDDLSAMSEVLRRRFARYLDVRAETGELGEETAADPDRPGIDPTT 498 Query: 455 KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK 514 + F P +V++DGG Q++AA L +L +++ + + +AK + E + Sbjct: 499 GRPRRFAYPPQLVVVDGGAPQVAAAAQALAELGIDD-VALCGLAKRLE-----EVWLPDD 552 Query: 515 GEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQ 573 ++L LY +QR+RDEAHRFAIT HR+RR K S LD + G+G +R++ LL+ Sbjct: 553 EFPVILPRTSEGLYLLQRVRDEAHRFAITFHRQRRSKRMTESALDSVPGLGEVRRKALLR 612 Query: 574 SFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615 FG++K ++ +S E + + G+ ++ A I + P Sbjct: 613 HFGSLKRLAAASVEEMTEVPGVGRRTAEAITAALNPEAGPRP 654 >gi|194290144|ref|YP_002006051.1| excinuclease ABC subunit c [Cupriavidus taiwanensis LMG 19424] gi|193223979|emb|CAQ69988.1| UvrABC system protein C (Excinuclease ABC subunit C) [Cupriavidus taiwanensis LMG 19424] Length = 674 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 207/648 (31%), Positives = 325/648 (50%), Gaps = 50/648 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P PGVY+ D G VLYVGKA +L+KR+ SY + + RI M+S+I I TV Sbjct: 33 RLPGLPGVYRYFDANGNVLYVGKARDLKKRVASYFNKTQLSPRIAMMVSRIARIETTVVR 92 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLE N+IK L PR+NIL RDDKS+P++ +T H+ P + +R ++ + YFGP Sbjct: 93 TEAEALLLENNLIKALAPRYNILFRDDKSYPFLKLT-GHRFPRMAYYRGATDRKHQYFGP 151 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV +++ LQ+ F LR+C D+VF +RTRPCLL QI RC+GPC IS + Y V Sbjct: 152 FPSAYAVRESMQILQKVFQLRTCEDTVFNNRTRPCLLHQIHRCTGPCVNAISEDDYARDV 211 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-----IY 239 A +FL G + E + M Q + ++E A RD++AALS + Sbjct: 212 ANAARFLQGRQSEVLEGLQGKMEQHAERLEFEQAAAVRDQIAALSTVLKRQAVEEVGGQA 271 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE-----STNAQILS------- 287 +D ++ AC+ G++ G +F E + Sbjct: 272 RDIDVLAVAVEGGRACVNLAMVRGGRHLGDKAYFPAHADEAAMIVEDADERAEGSAEEAG 331 Query: 288 ----------------------YFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGY 325 F+ Q Y ++P P +++S ++ ++LE Sbjct: 332 AADAADAALPLTVDRIATRVLSAFMVQHYLEQPAPPIVVVSHVPDDAAVLEALALHAGRK 391 Query: 326 KVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP---KRI 382 + QG+++ +E A A + ++ L+ + S + + + L R+ Sbjct: 392 VA-LVRQPQGQRKIWLEMAQQGAALALSRHLAEQGSQEARTRALAETIGLDLEDLALLRV 450 Query: 383 EIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQL 442 E +D SH G + VV + ++YR++N+ + DD A MR VL RR+ +L Sbjct: 451 ECFDISHTAGEATQASCVVYHHHDMQNSEYRRYNIQD--IVPGDDYAAMRQVLTRRYQKL 508 Query: 443 IKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPK 502 ++ + + + + P +V++DGGKGQ+ A+ V ++L ++ + ++ +AKG Sbjct: 509 VEQIQE-DGGAEGGSEAAALVPQIVLIDGGKGQVEVARQVFEELGLDIGL-LVGVAKGEG 566 Query: 503 RSAGMEKFFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEI 560 R G+E G L L L + ++RDEAHRFAIT R RR K S L+EI Sbjct: 567 RKVGLETLVFADGRPALELGQGSAALMLVAQIRDEAHRFAITGMRARRAKTRTTSRLEEI 626 Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 GIG R++ LL FG ++ + +S + LAS+EGIS+ +A +IY H Sbjct: 627 EGIGARRRQKLLTRFGGLRGVMAASIDELASVEGISRGLAEEIYRQLH 674 >gi|257055608|ref|YP_003133440.1| Excinuclease ABC subunit C [Saccharomonospora viridis DSM 43017] gi|256585480|gb|ACU96613.1| Excinuclease ABC subunit C [Saccharomonospora viridis DSM 43017] Length = 658 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 193/641 (30%), Positives = 306/641 (47%), Gaps = 46/641 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P+ PGVY+ D GRV+YVGKA +L+ R+ SY R M++ ++ +TV Sbjct: 13 TIPDSPGVYKFRDAGGRVIYVGKAKSLRSRLNSYFTDLAGLHPRTRQMVTTAASVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE N IK PRFN+ RDDK++P + +T + P L+ +R YFG Sbjct: 73 STEVEALQLEYNWIKEFDPRFNVRYRDDKTYPVLAVTLNEEFPRLHVYRGPRKKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P+A A+ +T++ L R F R+C+ VFR RPCLL I +CS PC G +S+E++ Sbjct: 133 PYAHAWAIRETLDLLLRVFPARTCSTGVFRRHSQIGRPCLLGYIDKCSAPCVGAVSAERH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E V FLSG + K+ R M +A+ ++E A RD LAAL + Sbjct: 193 REIVEGFCDFLSGRTDQMVRKLEREMAEASEALEFERAARLRDDLAALRKAMEKQAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D + H++ A +Q G+ RG + + E + ++ FL QFY + Sbjct: 253 DGTDADVIAFAHDELEAAVQIFHVRGGRVRGQRGWVIDKVEEMDVSDLVEQFLSQFYAGQ 312 Query: 298 P------------CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQAL 345 P +L+ E +E + G +V++ VP++G+KR + E Sbjct: 313 AELAAETPTDGVVVPREVLVPELPANAESMEQWLSELRGSRVRLRVPQRGDKRTLAETVA 372 Query: 346 INAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVV 401 NA + +Q + L + + L P RIE D SH+ G V +VV Sbjct: 373 RNAEEAFSQHKLRRAGDLTARSAALSELQEYLGLDSAPLRIECVDVSHLAGTDVVASLVV 432 Query: 402 VGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE-------------- 447 + K++YR+F L + D A + V+ RRFS+ +K + Sbjct: 433 FEDGLPRKSEYRRFALREAATEG--DVAAIAEVVRRRFSRYLKETQAQGVERGTETPGVN 490 Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507 + F P+++++DG Q +AA VL +L + + + ++ +AK + Sbjct: 491 QALDPETGKPRKFAYPPNLLVVDGAGPQATAAADVLAELGITD-VAVVGLAKRLE----- 544 Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPL 566 E + ++L LY +QR+RDEAHRFAI R++R K S LD I G+G + Sbjct: 545 EVWLPADDNPVILPRTSDALYLLQRVRDEAHRFAIRYQRQKRSKRVQESVLDGIPGLGQV 604 Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 RK L++ FG+VK I ++ +A++ G + A ++ Sbjct: 605 RKAALIKHFGSVKKIREATVAEIAAVPGFGTRTAEVVHAAL 645 >gi|148358620|ref|YP_001249827.1| excinuclease ABC subunit [Legionella pneumophila str. Corby] gi|189038064|sp|A5IAT1|UVRC_LEGPC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|148280393|gb|ABQ54481.1| excinuclease ABC subunit [Legionella pneumophila str. Corby] Length = 618 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 219/621 (35%), Positives = 340/621 (54%), Gaps = 34/621 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P PG+Y+MLD G VLYVGKA NL+KR+ SY N + ++SQI +I +VT Sbjct: 16 KLPGEPGIYRMLDEEGTVLYVGKAANLKKRVNSYFSKQNTGVKTRALVSQIKSIEISVTR 75 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFG 123 +E EALLLE+N+IK L+P++N+LLRDDKS+PYI +++ P + +R G++FG Sbjct: 76 SETEALLLESNLIKALRPKYNVLLRDDKSYPYIHLSNHPDFPRIELYRSKKKPPSGNFFG 135 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ V AV +TI ++Q+ F +R+C DS F+ R+RPCL +QIKRC+ PC IS E Y Sbjct: 136 PYPGVAAVRETIVTIQKIFKIRNCRDSYFKARSRPCLQYQIKRCTAPCVHYISPENYKLS 195 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NR 241 V +A +FL G + +++A M QA + ++E A + RD++ L IQ + Sbjct: 196 VEDAIRFLQGKCQIILDELAERMKQAVSQLNFEEAAVLRDQIKNLRLIQEQQGVVQLRGD 255 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ---------ILSYFLRQ 292 D ++ ACIQ GQ + +FF + + F+ Sbjct: 256 ADVIAIEVRPGFACIQCVTIREGQVLNSQSFFPTVPYAVLDEELDANSLWQQTFEAFVGF 315 Query: 293 FYTDKP--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR 350 +Y D P+ I+ ++ E+ LE ++ G KI V +G K + ++ A+ N Sbjct: 316 YYLDTSERIPDLIITNQSITESRSLEYILSQRRGKSCKIQVNPRGVKSRWMDFAVNNLRI 375 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 S + +S + + + + AL +R+E +D SH G S V VV G + Sbjct: 376 SVAEYVSKHSTIKSRYQALKQLLALDKNIERMECFDISHTQGESTVASCVVFDTEGPRPS 435 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 +YR+FN+ + DD A M + RRF +LI + PDV+I+D Sbjct: 436 EYRRFNIEG--ITPGDDYAAMEQAVTRRFKRLIDAQ---------------LLPDVLIID 478 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYF 529 GGKGQ+S + V+ L VE+ IT++ ++KGP R AG EK V + VL L+ Sbjct: 479 GGKGQVSIVKRVITSLGVED-ITLLGVSKGPSRKAGWEKLILVNENREFVLPEDSKALHL 537 Query: 530 IQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 +Q +RDEAHRFAIT HRK+R+K S L+ I G+G R++ LLQ FG ++ ++++ E Sbjct: 538 LQHIRDEAHRFAITAHRKKRQKTRVESTLESIEGVGTKRRQALLQRFGGLRELAKAPLEE 597 Query: 589 LASIEGISKKIACKIYNHFHK 609 + ++GI++++A +IY HFH Sbjct: 598 ICKVQGINEQLAKRIYEHFHP 618 >gi|309390138|gb|ADO78018.1| Excinuclease ABC subunit C [Halanaerobium praevalens DSM 2228] Length = 611 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 209/621 (33%), Positives = 334/621 (53%), Gaps = 34/621 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 +++P PGVY M D G ++YVGKA +L+ R++SY NN T++ ++ I + + Sbjct: 9 QLKELPRQPGVYLMKDETGMIIYVGKAKSLRNRVRSYFRKNNQTYKTQMLVKYIADFDYI 68 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 +T TEVEA +LEAN+IK+ +P+FNI L+DDKS+PYI IT P ++K R Y Sbjct: 69 MTDTEVEAYILEANLIKKHQPKFNIRLKDDKSYPYIKITKNVDFPRVFKTRIVKNDGAEY 128 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSEK 179 FGPFA VDA+ KT++ ++ F LRSC + + RPCL + I +C GPC G +S E Sbjct: 129 FGPFADVDAIYKTLDVIKDIFQLRSCKKELKANDPEDRPCLNYHIDKCLGPCIGAVSKED 188 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + + + FLSG LK+++ M +A + ++E A RD L A + + + Sbjct: 189 YHQLIDQVCLFLSGKQSQLKKQVEVQMKEAAAQRNFEKAARFRDALKAFTKLSESQKVMT 248 Query: 240 NRMDCFSLYH----NKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 ++ + +N AC Q G+ G F L+ ++ ++ FL+Q+Y Sbjct: 249 DKNIDQDVVALVQGTENQACAQLLLIRSGRLLGQEYFILEGTEAELESETMASFLQQYYE 308 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351 P+ +LL+ + EE LL + KV I P++G+K+K++E A NA ++ Sbjct: 309 QAAGIPDELLLNTKLEEQDLLGQRLAEIKNKKVSIQYPQKGDKKKMLEMAERNAQQNLKK 368 Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + + + ++ + + P +IE +D S+I G +V MVV + K Sbjct: 369 ENIRSKYEKQRTSGAVEKLGEILGIEKAPYQIEGFDISNIQGTDSVASMVVFKDGRPSKQ 428 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YR+F + V DD A M+ V+ERR+++L++ ++ L PD++++D Sbjct: 429 DYRRFKIKT--VTGPDDFASMKEVVERRYARLLREDKKL--------------PDLILID 472 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQL+AA +L+ L + + II +AK + E F E + L P L + Sbjct: 473 GGKGQLNAAYEILEFLGI-GNLPIIGLAKREE-----EIFRPNTSEPITLPHHTPTLQLL 526 Query: 531 QRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 QR+RDEAHRFA++ HRK R + +S LDEI G+G R+ LLQ FG++ I + L Sbjct: 527 QRVRDEAHRFAVSYHRKLRSRRLTHSMLDEIPGVGETRRTALLQHFGSLAKIREAKIWQL 586 Query: 590 ASIEGISKKIACKIYNHFHKN 610 ++GIS K A KIY++ ++ Sbjct: 587 KEVKGISGKTARKIYDYLREH 607 >gi|22126325|ref|NP_669748.1| excinuclease ABC subunit C [Yersinia pestis KIM 10] gi|45441346|ref|NP_992885.1| excinuclease ABC subunit C [Yersinia pestis biovar Microtus str. 91001] gi|108807240|ref|YP_651156.1| excinuclease ABC subunit C [Yersinia pestis Antiqua] gi|108812419|ref|YP_648186.1| excinuclease ABC subunit C [Yersinia pestis Nepal516] gi|145598550|ref|YP_001162626.1| excinuclease ABC subunit C [Yersinia pestis Pestoides F] gi|165926028|ref|ZP_02221860.1| UvrABC system, C protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165938704|ref|ZP_02227259.1| UvrABC system, C protein [Yersinia pestis biovar Orientalis str. IP275] gi|166010949|ref|ZP_02231847.1| UvrABC system, C protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166211005|ref|ZP_02237040.1| UvrABC system, C protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167420270|ref|ZP_02312023.1| UvrABC system, C protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425822|ref|ZP_02317575.1| UvrABC system, C protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170024580|ref|YP_001721085.1| excinuclease ABC subunit C [Yersinia pseudotuberculosis YPIII] gi|218928985|ref|YP_002346860.1| excinuclease ABC subunit C [Yersinia pestis CO92] gi|270486579|ref|ZP_06203653.1| excinuclease ABC, C subunit [Yersinia pestis KIM D27] gi|21959305|gb|AAM85999.1|AE013847_9 excinuclease ABC, subunit C [Yersinia pestis KIM 10] gi|45436206|gb|AAS61762.1| excinuclease ABC, subunit C [Yersinia pestis biovar Microtus str. 91001] gi|108776067|gb|ABG18586.1| Excinuclease ABC subunit C [Yersinia pestis Nepal516] gi|108779153|gb|ABG13211.1| Excinuclease ABC subunit C [Yersinia pestis Antiqua] gi|145210246|gb|ABP39653.1| Excinuclease ABC subunit C [Yersinia pestis Pestoides F] gi|165913318|gb|EDR31940.1| UvrABC system, C protein [Yersinia pestis biovar Orientalis str. IP275] gi|165922232|gb|EDR39409.1| UvrABC system, C protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165990293|gb|EDR42594.1| UvrABC system, C protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166208185|gb|EDR52665.1| UvrABC system, C protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166961965|gb|EDR57986.1| UvrABC system, C protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167055221|gb|EDR65018.1| UvrABC system, C protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751114|gb|ACA68632.1| excinuclease ABC, C subunit [Yersinia pseudotuberculosis YPIII] gi|270335083|gb|EFA45860.1| excinuclease ABC, C subunit [Yersinia pestis KIM D27] Length = 617 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 215/618 (34%), Positives = 337/618 (54%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D AG V+YVGKA +L+KR+ SY + + ++ I I TV Sbjct: 18 LKTVTSQPGVYRMYDTAGTVIYVGKAKDLKKRLTSYFRAQVANRKTETLVKNIAQIDVTV 77 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P I ++ P L HR + +G YF Sbjct: 78 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPLIFLSADE-HPRLAVHRGAKHEKGEYF 136 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RCSGPC +S E+Y Sbjct: 137 GPFPNSYAVRETLALLQKLFPVRQCENSVYRNRSRPCLQYQIGRCSGPCVEGLVSEEEYQ 196 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 V + FLSG + + ++ M +A+ + +E A RD++ A+ + + Sbjct: 197 RQVDYVRLFLSGKDQQVLTQLITRMEEASQQLHFEDAARIRDQIQAVRRVTEQQFVSGDS 256 Query: 242 M--DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295 D + + LAC+ F G+ G+ ++F K + + ++++ F+ QFY Sbjct: 257 EDLDVIGVAFDAGLACVHVLFIRLGKVLGSRSYFPKVPAGTELSEVVQTFVGQFYLQGSQ 316 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL E LL S + G K++I +G++ + ++ A NA + + Sbjct: 317 GRTLPGEILLDFTLTEKDLLASSLSELAGRKIQIQSRPRGDRARYLKLARTNASTALITR 376 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + +K+ K L R+E +D SH MG V VV NG V+++YR++ Sbjct: 377 LSQQSTIHQRMKELAKVLKLD-EINRMECFDISHTMGEQTVASCVVFDANGPVRSEYRRY 435 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + + DD A M VL+RR+ + + +++ PDV+ +DGGKGQ Sbjct: 436 NI--SGITPGDDYAAMAQVLKRRYGKALDDQK---------------IPDVIFIDGGKGQ 478 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 LS A V LNV + + ++ +AKG R AG+E F+ +GE L P L+ IQ Sbjct: 479 LSQAFDVFASLNVPWDKQKPLLVGVAKGSDRKAGLETLFLASEGEGFSLPPDSPALHLIQ 538 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RD++H AIT HR+RR K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 539 HIRDDSHNHAITGHRQRRSKVKNTSALEMIEGVGPKRRQVLLKYMGGLQPLFNASVEEIA 598 Query: 591 SIEGISKKIACKIYNHFH 608 + GIS+ +A KI+N Sbjct: 599 KVPGISQALAEKIHNALK 616 >gi|294628736|ref|ZP_06707296.1| excinuclease ABC, C subunit [Streptomyces sp. e14] gi|292832069|gb|EFF90418.1| excinuclease ABC, C subunit [Streptomyces sp. e14] Length = 697 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 190/648 (29%), Positives = 308/648 (47%), Gaps = 54/648 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 +P+ PGVY+ D RV+YVGKA +L++R+ +Y R M++ ++ + Sbjct: 10 KPGDIPDSPGVYRFRDDHRRVIYVGKAKSLRQRLANYFQDLAGLHPRTRTMVTTAASVEW 69 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TEVEAL LE + IK PRFN+ RDDKS+PY+ +T + P + R Sbjct: 70 TVVSTEVEALQLEYSWIKEYDPRFNVKYRDDKSYPYLAVTMNEQFPRVQVMRGHKKKGVR 129 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP+ A+ T++ L R F +R+C+ VF++ RPCLL I +CS PC G IS+ Sbjct: 130 YFGPYGHAWAIRDTVDLLLRVFPVRTCSAGVFKNAARTGRPCLLGYIGKCSAPCVGRISA 189 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E + E E F++G ++ M QA + +YE A RD + AL N Sbjct: 190 EDHRELAEEFCDFMAGRTGAYLRRLEERMTQAAEEMEYERAARLRDDIGALKKAMEKNAV 249 Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D ++ ++ A +Q G+ RG + E T ++ + L+Q Y Sbjct: 250 VLADATDADLIAVAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEEVTTGALVEHALQQLY 309 Query: 295 TDKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 ++ P+ +L+ + ++ ++ G V + +P++G+K+ ++E NA ++ Sbjct: 310 GEESGDAVPKEVLVPALPDPVEPVQQWLTERRGSGVSLRIPQRGDKKALMETVQRNAQQA 369 Query: 352 HTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 + S L++ + L P RIE YD SH+ G V MVV + Sbjct: 370 LALHKTKRASDLTTRSRALEEIAEALDLDSAPLRIECYDISHLQGDDVVASMVVFEDGLQ 429 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNF---------------- 451 K++YR+F + + QDD M V+ RRF + + +E Sbjct: 430 RKSEYRRFQIKG--FEGQDDVRSMHEVITRRFRRYLAEKEKTGEWAENGQDADGEILAPD 487 Query: 452 ---------------HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIIS 496 + F P +V++DGG+ Q++AAQ L +L +++ I + Sbjct: 488 GSPLAGAGLGDGALTEDDGRPKRFAYPPQLVVVDGGQPQVAAAQRALDELGIDD-IAVCG 546 Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYS 555 +AK + E + + +VL LY +QR+RDEAHRFAIT R +R K Sbjct: 547 LAKRLE-----EVWLPGDDDPVVLPRTSEGLYLLQRIRDEAHRFAITYQRTKRAKRFRAG 601 Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 PLDE+ G+G RKR L++ FG+VK + ++ + + + GI K A I Sbjct: 602 PLDEVPGLGETRKRALIKHFGSVKRLRSATIDQIREVPGIGLKTAETI 649 >gi|87122196|ref|ZP_01078079.1| excinuclease ABC, C subunit [Marinomonas sp. MED121] gi|86162516|gb|EAQ63798.1| excinuclease ABC, C subunit [Marinomonas sp. MED121] Length = 606 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 213/611 (34%), Positives = 339/611 (55%), Gaps = 25/611 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY+M G +LYVGKA NL+ R+ SY + T + ++++I++I T+T Sbjct: 14 NLTTRPGVYRMYGK-GELLYVGKAKNLKNRVSSYFRNTGLTTKTMALVNRIDDIEVTLTK 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE +IK+ +P +NILLRDDKS+PYIL++ +H+ PAL R +G FGP Sbjct: 73 SETEALLLEQTLIKQHRPPYNILLRDDKSYPYILLS-EHQHPALLFRRGGKAGEGKLFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV +++ ++Q+ F +R C DS + +R+RPCL +QIKRCS PC IS + Y V Sbjct: 132 FPSGTAVRESLATMQKVFKVRQCEDSYYANRSRPCLQYQIKRCSAPCVDLISDQAYANDV 191 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRM 242 + FL G + L +I++NM+ A + ++E A RD++ L HIQ Sbjct: 192 RHTRMFLEGKDQELLGEISQNMSAAAQEMEFERAAELRDQITQLKHIQEQQYVYGQSGEA 251 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300 D + C+ G+ G+ +++ K E ++L+ F+ Q Y + P Sbjct: 252 DVLAALIKPGGHCVHVMMIRGGKVVGSKSYYPKMPLEMNEGELLTSFIAQTYIGGAQDLP 311 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 ++++LS E + +L + F+ KV+I+ +G++ + ++ A +NA + +L + Sbjct: 312 KSLILSHEFNDMDILSAAIFETSKKKVEISANVRGQRARWLDLAKLNAEQGLQTRLLDKK 371 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 H K L P+++E +D SH G + V VV G G K +YR FN+ Sbjct: 372 HHFSRASALQKLLGLKEAPQQMECFDISHSSGEATVASCVVFGPEGPEKKRYRSFNIEG- 430 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 V+ DD M+ L RR+ ++ E + PDV+++DGGKGQL+ AQ Sbjct: 431 -VEPGDDYGAMKQALTRRYKRVQSGE--------------MTAPDVLLVDGGKGQLTQAQ 475 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHR 539 VLK+L + + I ++ +AKG R G+E ++ E +VL L+ IQ +RDEAHR Sbjct: 476 EVLKELGLVD-IFLLGVAKGETRKPGLETLYIGSKEDEVVLPPDSAALHLIQHIRDEAHR 534 Query: 540 FAITTH-RKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAITTH ++R KK +S L+ I G+GP R++ LL +FG ++ + +S E ++ ++GIS Sbjct: 535 FAITTHRKRRDKKRRHSSLEGIPGVGPTRRKNLLTAFGGIQELQAASQEEISKVKGISAG 594 Query: 599 IACKIYNHFHK 609 +A IY HK Sbjct: 595 MAQDIYAFLHK 605 >gi|2992527|gb|AAC08301.1| DNA excision repair nuclease component [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 608 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 214/613 (34%), Positives = 335/613 (54%), Gaps = 31/613 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI +I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M +A+ +E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTEKQFVSNAG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ GT T+F K + +++ F+ QFY Sbjct: 250 DNLDVIGVAFDAGMACVHVLFIRQGKVLGTRTYFPKVPGGTELGEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G ++ + +G++ + ++ A NA + K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALITK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP I R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTITQRLTALAAVLKLPAIK-RMECFDISHTMGEQTVPSCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + IK + PDV+++DGGKGQ Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIKESK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V ++R ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S + +A Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVKEIA 591 Query: 591 SIEGISKKIACKI 603 + GIS+ +A KI Sbjct: 592 KVPGISQGLAKKI 604 >gi|317047634|ref|YP_004115282.1| excinuclease ABC subunit C [Pantoea sp. At-9b] gi|316949251|gb|ADU68726.1| excinuclease ABC, C subunit [Pantoea sp. At-9b] Length = 610 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 215/616 (34%), Positives = 334/616 (54%), Gaps = 31/616 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY+M D G V+YVGKA +L+KR+ SY S + + ++S I I TVT Sbjct: 13 TVTSQPGVYRMYDATGTVIYVGKAKDLKKRLSSYFRSQVGSRKTEALVSNIQQIDVTVTH 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLE N IK +PR+N+LLRDDKS+PYI ++ P L HR + +G YFGP Sbjct: 73 TETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLS-GDSHPRLAMHRGAKHAKGEYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEF 183 F + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC ++ E+Y + Sbjct: 132 FPNGYAVRETLALLQKVFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVTEEEYAQQ 191 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NR 241 + FL+G + + ++ + M A+ +E A RD++ A+ I + Sbjct: 192 TDYVRLFLAGKDDQVLNQLVKRMEAASQALRFEEAARLRDQILAVRRITEKQFVSNQGDD 251 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----K 297 +D + ++ +AC+ F G+ G+ ++F K +++ A+++ FL QFY + Sbjct: 252 LDVMGVAYDAGMACLHVLFIRQGKVLGSRSYFPKVPADTELAEVVQTFLGQFYLQGSEAR 311 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P +ILL E LL S + G KV I +G++ + ++ A NA + T +LS Sbjct: 312 TLPTDILLDFSLPERELLAESLSEMAGRKVNIQSKPRGDRARYLKLARTNAATALTTRLS 371 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + Q L L R+E +D SH MG + VV NG +++ YR++N+ Sbjct: 372 QHSTIQQRLAALATFLELD-QINRMECFDISHTMGEQTIASCVVFDRNGPLRSDYRRYNI 430 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + DD A M VL RR+ + + E+ PDV+++DGGKGQL+ Sbjct: 431 EG--ITPGDDYAAMNQVLLRRYGKALDEEK---------------IPDVILIDGGKGQLA 473 Query: 478 AAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRL 533 A+ V +L+V ++R ++ +AKG R AG+E F + +GE L P L+ IQ + Sbjct: 474 QAKQVFAELDVPWDKDRPILLGVAKGSDRKAGLETLFFEAEGEGTSLPPDSPALHVIQHI 533 Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RD+AH AI+ HRK+R K S L+ I G+GP R++ LL+ G ++ + +S E +A + Sbjct: 534 RDDAHNHAISGHRKKRAKVKNTSALETIEGVGPKRRQQLLKYMGGLQPLMNASVEEIAKV 593 Query: 593 EGISKKIACKIYNHFH 608 GIS +A KIY Sbjct: 594 PGISFALAEKIYYSLK 609 >gi|293396652|ref|ZP_06640928.1| excision endonuclease subunit UvrC [Serratia odorifera DSM 4582] gi|291420916|gb|EFE94169.1| excision endonuclease subunit UvrC [Serratia odorifera DSM 4582] Length = 610 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 211/618 (34%), Positives = 331/618 (53%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY + + ++ I I TV Sbjct: 11 LKTVTSQPGVYRMYDATGTVIYVGKAKDLKKRLASYFRLQVGSRKTETLVKNIAQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPLIFLS-GDTHPRLAIHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S ++Y Sbjct: 130 GPFPNSYAVRETLALLQKLFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEDEYQ 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 V + +L+G + + ++ M A+ + ++E A RD++ A+ + N Sbjct: 190 RQVEYVRLYLAGKDQQVLHQLIERMESASKELNFEEAARVRDQIQAVRRVTERQFVSGNG 249 Query: 242 M--DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 D + +AC+ F G+ G+ ++F K S + A+++ F+ QFY Sbjct: 250 DDLDVIGVSFKSAMACLHVLFIRQGKVLGSRSYFPKVPSGTDIAEVVQTFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL E +LL S + G K+ I +G++ + ++ A NA + + K Sbjct: 310 ARTLPGEILLDFTLPEKTLLAESLSELAGRKIAIQSKPRGDRARYLKLARTNAATALSTK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L+ + + + + K L R+E +D SH MG + VV NG +++YR++ Sbjct: 370 LAQQSTIHQRMAELAKTLHLA-EINRMECFDISHTMGEQTIASCVVFDGNGPQRSEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + ++ + PDV+ +DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMAQVLRRRYGKALEENK---------------IPDVIFIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQ 531 L A V L V +++ +I IAKG R AG+E FFV +GE + L P L+ IQ Sbjct: 472 LGMAIDVFNSLEVPWDKSKPLLIGIAKGADRKAGLETLFFVPEGEGISLPSDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RD++H AIT HR++R K S L+ I GIGP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDDSHNHAITGHRQKRAKVKNTSALESIEGIGPKRRQMLLKYMGGLQPLLNASVEEIA 591 Query: 591 SIEGISKKIACKIYNHFH 608 + GIS+ +A KI+N Sbjct: 592 KVPGISQALAEKIHNALK 609 >gi|255327538|ref|ZP_05368605.1| excinuclease ABC subunit C [Rothia mucilaginosa ATCC 25296] gi|255295432|gb|EET74782.1| excinuclease ABC subunit C [Rothia mucilaginosa ATCC 25296] Length = 646 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 203/641 (31%), Positives = 319/641 (49%), Gaps = 46/641 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVT 63 ++P PGVY+ D GRV+YVGKA NL+ R+ SY S + + M+ ++ +TV Sbjct: 13 EIPTDPGVYRFRDADGRVIYVGKAKNLRNRLNSYFASPQTLSPKTYAMVHTAASVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E+E+L LE IK PRFNI RDDKS+PY+ IT P R YFG Sbjct: 73 ASEMESLQLEYTWIKEFSPRFNIAFRDDKSYPYLAITVNDVYPRAMVTRGERRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T+++L R F +R+C + VF ++ RPCLL I +C+ PC G+IS+E++ Sbjct: 133 PYSQAWAIRETLDALLRVFPVRTCTNGVFNRAKNSGRPCLLGYIDKCAAPCVGKISAEEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E +F+ GG ++ M A D+E A I RD +AAL+ N + Sbjct: 193 RELARGLTRFMGGGAEKHIAQLTAEMKAAAADMDFERAAILRDDIAALTKAFERNAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD- 296 D F+ + A +Q F G+ RG + ++ ++ST+AQ++ + Q Y+D Sbjct: 253 ATVDADLFAYAEDDLEASVQVFFVRGGRIRGQRGWIVEKVNDSTDAQLIEQLIAQVYSDI 312 Query: 297 ----------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKI 340 P ++L+ E E L + G V+I+VP++G+K ++ Sbjct: 313 AASLASQKDAEKSLNSYDIPRSVLVPVEPENKEQLASWLAEVRGGPVEISVPQRGDKAEL 372 Query: 341 IEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAV 396 ++ NA +S T S + L + + LP RIE YD SH+ G + V Sbjct: 373 MKTVAENARQSLTLHKSRRAGDLTTRSASLVELQEALELPDPLLRIECYDISHVQGTNVV 432 Query: 397 GCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP--- 453 MVV + KN YR +++ + +DD A M V+ RRF + + + P Sbjct: 433 ASMVVFEDGMPAKNAYRTYSITGD--AARDDTASMYDVITRRFKRHLAQQAEREAAPVHS 490 Query: 454 ------KKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507 + F P++V++DGG Q++AA L L + + + + IAK + Sbjct: 491 GEIDASTPEPAKFAYPPNLVLVDGGPPQVAAASAALSDLGITD-VYVAGIAKRLE----- 544 Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPL 566 E + +VL LY +QR+RDEAHRFAIT HR +R KA S LDE+ G+G + Sbjct: 545 ELWLPDDDYPVVLPRTSQALYLVQRIRDEAHRFAITFHRSKRGKAMVASALDEVPGLGEV 604 Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 ++ L++ FG+V I ++S E L ++ GI +A KI Sbjct: 605 KRSALIKHFGSVAQIKQASAEELTAVPGIGPALAQKILAAL 645 >gi|123442114|ref|YP_001006097.1| excinuclease ABC subunit C [Yersinia enterocolitica subsp. enterocolitica 8081] gi|189038130|sp|A1JLV6|UVRC_YERE8 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|122089075|emb|CAL11900.1| excinuclease ABC subunit C [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 610 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 216/618 (34%), Positives = 338/618 (54%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D AG V+YVGKA +L+KR+ SY ++ + + ++ I I TV Sbjct: 11 LKTVTSQPGVYRMYDKAGTVIYVGKAKDLKKRLTSYFRAHVASRKTETLVKNIAQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P I ++ K P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPLIFLS-ADKHPRLAIHRGAKHEKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RCSGPC +S E+Y Sbjct: 130 GPFPNSYAVRETLALLQKLFPVRQCENSVYRNRSRPCLQYQIGRCSGPCVPGLVSEEEYQ 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 V + FLSG + + ++ M +A+ +E A RD++ A+ + + Sbjct: 190 RQVDYVRLFLSGKDQQVLTQLISRMEEASRLLHFEDAARIRDQIQAVRRVTEQQFVSGDS 249 Query: 242 M--DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 D + + LAC+ F G+ G+ ++F K + + ++++ F+ QFY Sbjct: 250 EDLDVIGVAFDAGLACVHVLFIRQGKVLGSRSYFPKVPAGTELSEVVQTFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL E LL S + G K++I +G++ + ++ A NA + + Sbjct: 310 VRTLPGEILLDFTLAEKDLLASSLSELAGRKIQIQSRPRGDRARYLKLARTNASTALVTR 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + +K+ K L R+E +D SH MG V VV NG V+++YR++ Sbjct: 370 LSQQSTIHQRMKELAKILNLD-EINRMECFDISHTMGEQTVASCVVFDANGPVRSEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + + DD A M VL+RR+ + + +++ PDV+ +DGGKGQ Sbjct: 429 NI--SGITPGDDYAAMSQVLKRRYGKALDDKK---------------IPDVIFIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 LS A V LNV + + ++ +AKG R AG+E F+ +GE L P L+ IQ Sbjct: 472 LSQAFDVFASLNVPWDKQKPLLVGVAKGSDRKAGLETLFLAAEGEGFSLPPDSPALHLIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RD++H AIT HR+RR K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDDSHHHAITGHRQRRSKVKNTSALELIEGVGPKRRQILLKYMGGLQPLLNASVEEIA 591 Query: 591 SIEGISKKIACKIYNHFH 608 + IS+ +A KIYN Sbjct: 592 KVPSISQALAEKIYNALK 609 >gi|323485851|ref|ZP_08091186.1| hypothetical protein HMPREF9474_02937 [Clostridium symbiosum WAL-14163] gi|323693190|ref|ZP_08107408.1| excinuclease ABC subunit C [Clostridium symbiosum WAL-14673] gi|323400839|gb|EGA93202.1| hypothetical protein HMPREF9474_02937 [Clostridium symbiosum WAL-14163] gi|323502673|gb|EGB18517.1| excinuclease ABC subunit C [Clostridium symbiosum WAL-14673] Length = 625 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 201/626 (32%), Positives = 320/626 (51%), Gaps = 21/626 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M D ++YVGKA +L+ R++ Y S+ N T +I M+S+I + Sbjct: 7 ELKKLPAQPGVYIMHDAKDEIIYVGKAISLKNRVRQYFQSSRNKTAKIEQMVSRIARFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK +PR+N +L+DDK++PYI +T + P + R + Sbjct: 67 IVTDSELEALVLECNLIKEHRPRYNTMLKDDKTYPYIKVTVSEEYPRILFSRMMKKDKNK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGPF S AV+ TI + + + +R+C + + + RPCL + I +C PC G +S E Sbjct: 127 YFGPFTSAGAVKDTIELIHKIYHIRTCTRKLPQDIGKDRPCLYYHIHQCDAPCQGYVSKE 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + V +A FL G + + + M A+ + ++E AI +R+ L ++ + Sbjct: 187 EYQQSVKQALDFLGGRYEPVMKYLEDRMTAASEEMEFEKAIEYRELLGSVRKVAQKQKIT 246 Query: 239 ---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D ++ + A +Q F G+ G F + S + QIL+ F++QFY Sbjct: 247 SQSIDDRDIIAMAKDDGDAVVQVFFVRDGRLIGREHFHMSISSAEEDGQILNSFVKQFYA 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350 P P I + EE E+ ++ + G KVKI VPK+G K +++E A NA + Sbjct: 307 GTPFIPHEIWVQEELEDAEVIVSFLTARRGQKVKIVVPKKGSKEQLVELAEKNARMVLSQ 366 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E+ + + L + RIE YD S+I G +VG M+V + +N Sbjct: 367 DKEKIKREELRTIGAMNQVGEWIGLKGVK-RIEAYDISNISGFESVGSMIVYEDGRPKRN 425 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEY-SFPSWPDVVIL 469 YRKF + VK +D A MR VL RRFS + E L + SF +PD++++ Sbjct: 426 DYRKFRIKT--VKGPNDYASMREVLTRRFSHGLTEAEQLKAEGTDAAFGSFTRFPDLIMM 483 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGG+GQ++ A VLK L +E I + + K + ++ Sbjct: 484 DGGRGQVNIALEVLKSLQIE--IPVCGMVKDDNHRTRG---LYYNNVEIPIDHHSEGFRL 538 Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 I R++DEAHRFAI HR R K S LD+I GIGP R++ L++ F T++ + + E Sbjct: 539 ITRVQDEAHRFAIEYHRSLRSKEQVRSVLDDIKGIGPARRKALMRHFKTIEAVRDAGIEE 598 Query: 589 LASIEGISKKIACKIYNHFHKNTSHT 614 LA +++ A +Y FH T Sbjct: 599 LAGAPQMNRNAAEAVYRFFHGEEMTT 624 >gi|150391815|ref|YP_001321864.1| excinuclease ABC subunit C [Alkaliphilus metalliredigens QYMF] gi|189038016|sp|A6TVI7|UVRC_ALKMQ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|149951677|gb|ABR50205.1| excinuclease ABC, C subunit [Alkaliphilus metalliredigens QYMF] Length = 622 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 182/622 (29%), Positives = 325/622 (52%), Gaps = 21/622 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +P+ PGVY M + A ++YVGKA +L+ R++ Y S NN ++ M++ IN + Sbjct: 7 QLKLLPDKPGVYLMKNKANEIIYVGKAISLKNRVRQYFQSSNNQHPKVRAMVTHINFFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK +P++N+LLRDDK++PYI +T P + K R + Sbjct: 67 IVTDSELEALILECNLIKENRPKYNVLLRDDKTYPYIKVTMNETFPRVLKTRKVLKDKAK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS---VFRHRTRPCLLFQIKRCSGPCTGEISS 177 YFGP+ ++ A+ +T+ + + + +R C + + + RPCL + I++C GPCTG ++ Sbjct: 127 YFGPYTNISALNETLEVIHQMYPIRVCGKNIEKMIERQERPCLNYHIRKCIGPCTGMVND 186 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN-- 235 E Y + +HE FL G L +KI M +A K D+E A +RD+ AL I Sbjct: 187 ETYQQMIHEIILFLGGKEDELIKKIEEKMKRAAEKMDFEGAAHYRDQRQALLDIIERQKV 246 Query: 236 -DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 D ++ + +C+Q F G+ + L T + +ILS F++QFY Sbjct: 247 VSVNDIDQDIIAMAKGEQESCVQVFFVRGGKLVQREHYILTTREDEDEKEILSAFIKQFY 306 Query: 295 TD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH- 352 + P+ +L+ E E+ L+ + G VK+ P +GEK+ +I+ NA + Sbjct: 307 GETNFIPKEVLVEREVEDQELMAQWLTNKRGNHVKVRAPLRGEKKSMIQLVKRNAALTMG 366 Query: 353 ---TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 + ++ + + + L R+E +D S+ G +VG MVV Sbjct: 367 QREETQRKSKEKTEGAMVVLQEALGLADAIHRVEAFDISNTQGMESVGSMVVFEGGKPKN 426 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK-QEYSFPSWPDVVI 468 YR+F + ++ +D + ++ RR+ + + + + + QE F +PD+++ Sbjct: 427 KDYRRFKIKT--IQGANDYGSIEEIIYRRYKRGVDETKAMIENTMTVQEGKFSLFPDLIM 484 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 +DGG GQ+++ + L L + I + + K + V +G+ + + +L Sbjct: 485 VDGGLGQVTSVKKGLAALGIL--IPVCGMVKDERHRTRG---LVYEGKEIPIERPSHLLR 539 Query: 529 FIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 FI +++DE HRFAIT HR R K+ +S L++I GIG R++ L++ F ++ + +++ E Sbjct: 540 FITQVQDEVHRFAITYHRSLRTKSILHSVLEDIPGIGEKRRKSLMKHFESIDKMKQATIE 599 Query: 588 TLASIEGISKKIACKIYNHFHK 609 L +EG+++K+A +Y+ F K Sbjct: 600 ELIEVEGLNRKVAENMYHFFRK 621 >gi|77165121|ref|YP_343646.1| excinuclease ABC subunit C [Nitrosococcus oceani ATCC 19707] gi|254433527|ref|ZP_05047035.1| excinuclease ABC, C subunit [Nitrosococcus oceani AFC27] gi|90111071|sp|Q3JAN0|UVRC_NITOC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|76883435|gb|ABA58116.1| Excinuclease ABC subunit C [Nitrosococcus oceani ATCC 19707] gi|207089860|gb|EDZ67131.1| excinuclease ABC, C subunit [Nitrosococcus oceani AFC27] Length = 599 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 232/609 (38%), Positives = 354/609 (58%), Gaps = 25/609 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + CPGVY+MLD G+VLYVGKA NL++RIKSY ++ +I ++ QI +I+ TVT Sbjct: 12 NLTPCPGVYRMLDAKGKVLYVGKAKNLKRRIKSYFRNSKLAPKIHVLVKQICDIKITVTH 71 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EAL+LE+N+IK L+PR+N+LLRDDKS+PYI ++ P L HR + G YFGP Sbjct: 72 TENEALILESNLIKALQPRYNVLLRDDKSYPYIFLS-ADDFPRLGFHRGVKQVSGQYFGP 130 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + ++ +V +T+ LQR F +R C D+ +R+R+RPCL +QIKRC+ PC G IS + Y + + Sbjct: 131 YPNIRSVWQTLKLLQRVFPVRQCEDNFYRNRSRPCLQYQIKRCTAPCVGLISKKDYSQDI 190 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYNRM 242 FL G + + ++ M +A+ + +E A +RDR+A+L IQ + Sbjct: 191 QHVVMFLKGRDQQVINELVIRMEEASGQLAFEQAAYYRDRIASLRQIQARQYISGEKKDI 250 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D + + +AC++ F G N G TF K + T ++LS F+ Q+Y ++ P Sbjct: 251 DVLGVALTEKMACVEVFFIRGGHNLGNKTFLPKLEGNLTPEELLSTFIAQYYLNRETPPI 310 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 ++LS + ++ LL KQ G K+ + P +G K + I+ AL NA + Q L+ + + Sbjct: 311 LILSHQPKDMGLLTEVLSKQAGRKIALIKPVRGPKVQWIKMALANAKINLNQHLAEKSNI 370 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 K + +L + P+RIE +D SHI G + V VV G K YR+FN+ + Sbjct: 371 TARFKSLQQLLSLANFPQRIECFDVSHIQGTATVASCVVFDREGPRKADYRRFNI--TGI 428 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD +R L RRF + +PD++++DGGKGQ++ + V Sbjct: 429 IPGDDYGALRQALMRRFKK-----------------KEGVFPDLLVIDGGKGQINQSLRV 471 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFA 541 LK++ + IT++ IAKGP+R AG E F+ +++ P L+ +Q +RDEAHRFA Sbjct: 472 LKEIGIT-EITVLGIAKGPERKAGNETLFLAGYENPVMVTSDSPALHILQHIRDEAHRFA 530 Query: 542 ITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 I +HRKRR K S L+ I+G+GP R+R LL G ++ I+R+ E LA IEGIS ++A Sbjct: 531 IVSHRKRRAKGGKLSLLEGISGLGPKRRRKLLIQLGGLQEITRAGVEDLAQIEGISLELA 590 Query: 601 CKIYNHFHK 609 +IY+ FH+ Sbjct: 591 QRIYDVFHR 599 >gi|254455315|ref|ZP_05068744.1| excinuclease ABC, C subunit [Candidatus Pelagibacter sp. HTCC7211] gi|207082317|gb|EDZ59743.1| excinuclease ABC, C subunit [Candidatus Pelagibacter sp. HTCC7211] Length = 611 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 257/608 (42%), Positives = 374/608 (61%), Gaps = 18/608 (2%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PGVY+ML+ +LYVGKA NL R+KSY+ NH R M+SQ I T T Sbjct: 18 IPKSPGVYRMLNHKDDILYVGKAKNLPNRLKSYVSEKNHIIRTERMLSQTFKIEITTTAN 77 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLEAN+IK+ +P+FNILL+DDKSFP+I I +K + P + KHR +G YFGPF Sbjct: 78 ESEALLLEANLIKKHRPKFNILLKDDKSFPFIFIGEKEQWPRVTKHRGKKEKEGFYFGPF 137 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 AS TI LQ+ F LR C + F++R RPC+L+QIKRCSGPC G I Y + V Sbjct: 138 ASAGTANWTIKMLQKIFQLRVCDEGTFKNRKRPCILYQIKRCSGPCVGYIDKSDYKKTVD 197 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNRM 242 +A +F+SG + ++++ +++ M A+ + DYE A I RDR+ +L+ IQ+ ++ Sbjct: 198 QAIQFVSGKSRDIQKNLSKEMEAASDELDYEKASIFRDRIKSLNIIQSSQRINEANLVDA 257 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D + Y ACIQ F+ QN G +F K D + ++I+S FL QFY +K P+ Sbjct: 258 DVIAAYKESGKACIQVFFYRSKQNWGNQAYFPKHDPDQNISEIMSSFLMQFYENKTVPKL 317 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 ++++ E + L+E + K+ G + I K+G K K+I A NA S +KL ++ Sbjct: 318 VIINSEINDKKLIEETLSKKEGNTISINTAKKGTKAKVIAMAEKNAKESLNRKLYETNNN 377 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 + + + KKF L + +E+YDNSHI G ++VG MV G GFVK +YRKF++ Sbjct: 378 KNLFEGIIKKFDLKNTINLVEVYDNSHISGTNSVGAMVTFGNEGFVKKRYRKFDIKTK-G 436 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 QDD AM++ VL RRF + I + N + + PD++++DGGKGQ S+A+ V Sbjct: 437 AEQDDFAMLKEVLSRRFKRAILEKGN-----------YLTLPDLILIDGGKGQYSSAKEV 485 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 L +L + + + +I+IAKG R+ G E FF G++ DP L+F+QRLRDEAHRFAI Sbjct: 486 LNELGLYD-LPMIAIAKGKMRNNGDETFFY-NGKSYKFEKNDPTLFFMQRLRDEAHRFAI 543 Query: 543 TTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T+HR +R K S LD+I+GIG +RKR LL FG+ + + +S + + S+EG+ +K+A Sbjct: 544 TSHRAKRAKGLSKSLLDQIDGIGAIRKRSLLNHFGSARAVESASFDEIKSVEGVEEKVAK 603 Query: 602 KIYNHFHK 609 KIYN FH+ Sbjct: 604 KIYNFFHE 611 >gi|221201360|ref|ZP_03574399.1| excinuclease ABC, C subunit [Burkholderia multivorans CGD2M] gi|221208840|ref|ZP_03581838.1| excinuclease ABC, C subunit [Burkholderia multivorans CGD2] gi|221171296|gb|EEE03745.1| excinuclease ABC, C subunit [Burkholderia multivorans CGD2] gi|221178628|gb|EEE11036.1| excinuclease ABC, C subunit [Burkholderia multivorans CGD2M] Length = 674 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 215/661 (32%), Positives = 331/661 (50%), Gaps = 62/661 (9%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D AG VLYVGKA +L+KR+ SY + RI M+++I I TVT Sbjct: 19 QLPHMPGVYRYYDAAGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H+ P + +R + Q YFGP Sbjct: 79 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-SHRFPRMAYYRGAVDKQNQYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RC+ PC G IS+E Y V Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVGAISAEDYAVDV 197 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 A +FL G + +++ + M+ + +E A R+++++L+ + + Sbjct: 198 SNAARFLLGRQSEVMKELEQKMHAFAAELKFEQAAAVRNQMSSLATVLHQQAIEVGSDSD 257 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE---------------------- 279 D ++ C+ G++ G +F Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPTHVESALTLAEGGLGDDTDADAIDAPD 317 Query: 280 ------------------STNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFK 321 S A++L F+ Q Y P +++S LLE+ + Sbjct: 318 VPAEAPAGEPGSARDTTASIEAEVLDAFIAQHYLGNRVPPVLVVSHAPASRDLLEL-LSE 376 Query: 322 QYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP-- 379 Q G++V + QG++R + A NA + + LS + S Q + + L Sbjct: 377 QAGHRVSLVRQPQGQRRAWLSMAEQNAQIALARLLSEQGSQQARTRALAETLGLECDDLA 436 Query: 380 -KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERR 438 RIE +D SH MG + VV + +YR++N+ + DD A MR VL RR Sbjct: 437 TLRIECFDISHTMGEATQASCVVYHHHKMQSGEYRRYNI--TGITPGDDYAAMRQVLTRR 494 Query: 439 FSQLIK---------NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE 489 + ++++ + ++ +Q + P++V++DGGKGQ+ A+ V +L ++ Sbjct: 495 YEKMVEQAAQAAAADDAAGIDGESTRQAEASSLLPNIVLIDGGKGQVEIARQVFTELGLD 554 Query: 490 NRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKR 548 + ++ +AKG R G+E G L L L + ++RDEAHRFAIT R + Sbjct: 555 TSM-LVGVAKGEGRKVGLETLVFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAK 613 Query: 549 RKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 R KA S L+E+ G+G R++ LL FG ++ + +S E LAS++GIS +A +IY Sbjct: 614 RAKARQTSRLEELEGVGAKRRQRLLARFGGLRGVVAASVEELASVDGISHALAEQIYKQL 673 Query: 608 H 608 H Sbjct: 674 H 674 >gi|113868509|ref|YP_726998.1| excinuclease ABC subunit C [Ralstonia eutropha H16] gi|113527285|emb|CAJ93630.1| Excinuclease ABC, nuclease subunit (C) [Ralstonia eutropha H16] Length = 681 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 209/640 (32%), Positives = 327/640 (51%), Gaps = 42/640 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P PGVY+ D AG VLYVGKA +L+KR+ SY + + RI M+++I I TV Sbjct: 48 RLPGLPGVYRYFDAAGNVLYVGKARDLKKRVSSYFNKTQLSPRIAMMVARIARIDTTVVR 107 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLE N+IK L PR+NIL RDDKS+P++ +T H+ P + +R ++ + YFGP Sbjct: 108 TEAEALLLENNLIKALAPRYNILFRDDKSYPFLKLT-GHRFPRMAYYRGATDRKHQYFGP 166 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV +++ LQ+ F LR+C D+VF +RTRPCLL QI RC+GPC IS E Y V Sbjct: 167 FPSAYAVRESMQILQKVFQLRTCEDTVFNNRTRPCLLHQIHRCTGPCVNAISEEDYARDV 226 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-----IY 239 A +FL G + E + M Q + ++E A RD++AALS + Sbjct: 227 ANAARFLQGRQTEVLEGLQGKMEQHAERLEFEQAAAVRDQIAALSTVLKRQAVEEVGGQA 286 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE-----STNAQIL-------- 286 +D ++ AC+ ++ G +F E + Sbjct: 287 RDIDVLAVAVEGGRACVNLAMVRGSRHLGDKAYFPAHADEAAMIVEDADEREDDSAAAAA 346 Query: 287 -------------SYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPK 333 S F+ Q Y ++P P I++S ++ ++LE + Sbjct: 347 PPLTVDRIATRVLSAFMVQHYLEQPAPPIIVVSHAPDDATVLEALTLHAGRKVT-LVRQP 405 Query: 334 QGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP---KRIEIYDNSHI 390 QG+++ +E A A + +++L+ + S + + + L R+E +D SH Sbjct: 406 QGQRKVWLEMAQQGAALALSRRLAEQGSQEARTRALAETIGLDLEDLALLRVECFDISHT 465 Query: 391 MGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLN 450 G + VV + ++YR++N+ + DD A MR VL RR+ +L++ + + Sbjct: 466 AGEATQASCVVYHHHDMQNSEYRRYNIQD--IIPGDDYAAMRQVLTRRYQKLVEQIQE-D 522 Query: 451 FHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF 510 + + P +V++DGGKGQ+ A+ V ++L ++ + ++ +AKG R G+E Sbjct: 523 GGMEAGSEAAAQVPQIVLIDGGKGQVEVARQVFEELGLDIGL-LVGVAKGEGRKVGLETL 581 Query: 511 FVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRK 568 G L L L + ++RDEAHRFAIT R RR K S L+EI GIG R+ Sbjct: 582 VFADGRPSLELGQGSAALMLVAQIRDEAHRFAITGMRARRAKTRTTSRLEEIEGIGARRR 641 Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 + LL FG ++ + +S + LAS+EGIS+ +A +IY H Sbjct: 642 QKLLTRFGGLRGVMAASIDELASVEGISRGLAEEIYRQLH 681 >gi|219849482|ref|YP_002463915.1| excinuclease ABC subunit C [Chloroflexus aggregans DSM 9485] gi|219543741|gb|ACL25479.1| excinuclease ABC, C subunit [Chloroflexus aggregans DSM 9485] Length = 653 Score = 525 bits (1352), Expect = e-146, Method: Composition-based stats. Identities = 202/638 (31%), Positives = 327/638 (51%), Gaps = 41/638 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVTC 64 +P+ PGVY D GR+LYVGK+ L+ R++SY + + + ++S I + VT Sbjct: 21 VPDQPGVYLWKDATGRLLYVGKSKRLRDRMRSYFGSPRSLSGKTRRLVSHIADFEIIVTQ 80 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E+EALLLE N+IK+ +P +NILL+DDK++PYI +T + P ++ R YFGP Sbjct: 81 SELEALLLEMNLIKQHRPPYNILLKDDKTYPYIKVTVNEEWPRVFATRQVLNDGARYFGP 140 Query: 125 FASVDAVEKTINSLQRTFFLR------SCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISS 177 +AS +V ++ L R F R + R + +PCL +Q++RC GPC ++ Sbjct: 141 YASAGSVYHALDILNRLFAFRPPYECKDDKFNRHRKQGKPCLYYQMRRCLGPCVPGLVTK 200 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E Y + + +FL G + + ++ M +A + ++E A RDR+ A+ I Sbjct: 201 ETYRQAIDSVCRFLEGKSDQIVRELRAQMEEAAERLEFERAAYLRDRIQAIEKISERQQV 260 Query: 238 ---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D + A +Q F G+ F L+ + ++ +L+ FL QFY Sbjct: 261 LRTVDTDQDVIAFAREDGSAVVQVLFIRGGKLINAEPFTLQGTEDESDEALLTSFLTQFY 320 Query: 295 TDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS-- 351 P P ++LL+E EE ++ ++ G++V+ITVP++GEK++++E A NA + Sbjct: 321 QHAPSIPPSLLLAEHVEEPLIIASWLQQKSGHRVEITVPRRGEKKQLVEMAAANARQKLR 380 Query: 352 --HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 Q L +E L + LP +P+RIE YD S+ G +V MVV Sbjct: 381 EIREQWLHSEQRAVAALSELRDLLELPALPRRIECYDVSNTQGQQSVASMVVFEHGEPRP 440 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-------------------EENLN 450 YR+F + V +D A +R V+ RRF + + Sbjct: 441 AHYRRFKIKT--VSGANDVASLREVISRRFRRAAEALGDTQQAAAAVEVEGENDSPAEPT 498 Query: 451 FHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF 510 ++ + PD++++DGG Q++A + L +L +I ++ +AKGP R+ Sbjct: 499 DTARQALERWADLPDLLLVDGGVAQVAAVEAALHELGFT-QIPVVGVAKGPDRNRFD--L 555 Query: 511 FVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKR 569 + LVL L +QR+ +EAHRFAIT HRK R KA SPLDEI GIGP RKR Sbjct: 556 VRIGQDPLVLARDSKALALVQRIDEEAHRFAITYHRKLRNKATLRSPLDEIPGIGPKRKR 615 Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 LL++FG++ I R+S + LA++ G+++K A ++ + Sbjct: 616 ALLKAFGSIDGIRRASIDELAAVPGMTRKAAEELKSLL 653 >gi|291520852|emb|CBK79145.1| excinuclease ABC, C subunit [Coprococcus catus GD/7] Length = 612 Score = 525 bits (1352), Expect = e-146, Method: Composition-based stats. Identities = 195/619 (31%), Positives = 320/619 (51%), Gaps = 25/619 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M D+ ++YVGKA L+ R++ Y S+ NHT +I M+S + + Sbjct: 7 ELKKLPAKPGVYIMHDVHDDIIYVGKAIILKNRVRQYFQSSRNHTPKIRQMVSHVARFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE N+IK +P++N +L+DDK++PYI +T P + R + Sbjct: 67 IITDSELEALVLECNLIKEHRPKYNTMLKDDKTYPYIKVTVGEAFPRIMLVRSMKKDKAK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S +V I+ Q+ + +RSC S+ + RPCL + + +C PC G IS E Sbjct: 127 YFGPYTSSQSVRDIIDLSQKIYKIRSCNRSLPKETGNDRPCLYYHMGQCQAPCQGYISQE 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 +Y E VH+ FL G + + + M A+ K D+E A +RD L ++ I Sbjct: 187 EYHENVHQMLHFLGGNFEPVIQMLTDKMYAASEKMDFEKAASYRDLLNSVKQIDQKQKIT 246 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D + +K+ A +Q F G+ G F++ + T +Q+L+ F++Q+Y Sbjct: 247 SSEMDDKDVIAFARDKDEAVVQVFFVRHGRLIGREHFYVSGVANDTESQVLTAFVKQYYA 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351 P P ++L ++ ++ + G+KV+ VP++G+K +++E A NA Sbjct: 307 SSPFVPSTLMLQYPLDDREVILEWLSGRKGHKVREVVPQRGQKERLVELAAENARNVLTK 366 Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E ++D + LP +R+E +D S+I G VG M+V +N Sbjct: 367 DREKIRLEEARTTGAVRDLAEMLGLPAGIRRMEAFDISNISGVETVGSMIVYENGKPKRN 426 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YRKF + VK QDD M VL RRF ++ +E F +PDV+++D Sbjct: 427 AYRKFKIRT--VKGQDDYRCMEEVLTRRFQHGLEE------TVSGEEGKFSDFPDVLMMD 478 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ++ A VL +L++ +I + + K + L ++ + I Sbjct: 479 GGKGQVNVALKVLNQLHL--KIPVCGMVKDDHHRTRG---LYYQQVELPIDTHSEMFKLI 533 Query: 531 QRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DEAHRFAI HR+ R K S LDEI GIGP R++ L++ FG+++ I + E L Sbjct: 534 TRMQDEAHRFAIEYHRQLRSKTQVRSVLDEIPGIGPARRKALMKYFGSIEKIREADEEEL 593 Query: 590 ASIEGISKKIACKIYNHFH 608 E ++ A +Y +FH Sbjct: 594 MKAESMNAGSARAVYAYFH 612 >gi|118463596|ref|YP_882542.1| excinuclease ABC subunit C [Mycobacterium avium 104] gi|118164883|gb|ABK65780.1| excinuclease ABC, C subunit [Mycobacterium avium 104] Length = 628 Score = 525 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 187/631 (29%), Positives = 302/631 (47%), Gaps = 35/631 (5%) Query: 13 YQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTCTEVEALL 71 Y+ D GRV+YVGKA +L+ R+ SY N R M++ + +TV TEVEAL Sbjct: 2 YRFRDPHGRVIYVGKAKSLRSRLTSYFADVANLHPRTRQMVTTAAKVEWTVVNTEVEALQ 61 Query: 72 LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAV 131 LE N IK PRFN+ RDDKS+P + +T + P L +R YFGP++ A+ Sbjct: 62 LEYNWIKEFDPRFNVRYRDDKSYPVLAVTLNEEFPRLMVYRGPRRKGVRYFGPYSHAWAI 121 Query: 132 EKTINSLQRTFFLRSCADSVFRHRT---RPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 +T++ L R F R+C+ VF+ RPCLL I +CS PC G +S+E++ + V + Sbjct: 122 RETLDLLTRVFPARTCSAGVFKRHKQIDRPCLLGYIDKCSAPCIGRVSAEQHRQIVDDFC 181 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCF 245 FLSG ++ + MN A + D+E A RD L AL + D Sbjct: 182 DFLSGKTDRFARELEQQMNAAAAELDFERAARLRDDLGALKRAMEKQAVVLGDGTDADVV 241 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLK---TDSESTNAQILSYFLRQFYTD------ 296 + ++ A +Q G+ RG + ++ +S Q++ FL QFY + Sbjct: 242 AFADDELEAAVQVFHVRGGRVRGQRGWIVEKSADPGDSGEEQLVEQFLTQFYGEQAELGG 301 Query: 297 ------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR 350 P P +L+ L G +V + VP++G+KR + E NA Sbjct: 302 AADESVNPVPREVLVPCLPSNADELTSWLSGLRGSRVALRVPRRGDKRALAETVQRNAKE 361 Query: 351 SHTQKLSTEISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 + Q L++ + L P RIE D SH+ G VG +VV + Sbjct: 362 ALQQHKLKRAGDFNARSAALQNIQEALGLSEAPLRIECVDISHVQGTDVVGSLVVFEDGL 421 Query: 407 FVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLN-FHPKKQEYSFPSWP 464 K+ YR F + + + DD A + V RRF++ + + + N P+ + F P Sbjct: 422 PRKSDYRHFAIREAAGQGRSDDVASIAEVTRRRFARHLSEQNDPNMLSPEGKSRRFAYPP 481 Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524 ++ ++DGG Q++AA VL++L + + + +I +AK + E + + + +++ Sbjct: 482 NLYVVDGGAPQVNAASAVLEELGITD-VAVIGLAKRLE-----EVWVPSEPDPVIMPRNS 535 Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583 LY +QR+RDEAHRFAIT HR +R K S LD + G+G R++ L+ FG++ + Sbjct: 536 EGLYLLQRVRDEAHRFAITYHRSKRSKRMTASVLDSVPGLGEHRRKALVSHFGSIARLKE 595 Query: 584 SSPETLASIEGISKKIACKIYNHFHKNTSHT 614 ++ + + ++ GI A + + S Sbjct: 596 ATVDQITAVPGIGVATATAVLEALRPDESKA 626 >gi|320011426|gb|ADW06276.1| excinuclease ABC, C subunit [Streptomyces flavogriseus ATCC 33331] Length = 685 Score = 525 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 179/651 (27%), Positives = 312/651 (47%), Gaps = 59/651 (9%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 Q+P+ PGVY+ D RV+YVGKA NL++R+ +Y R M++ ++ + Sbjct: 10 KPGQIPDSPGVYKFRDEHRRVIYVGKAKNLRQRLANYFQDLAGLHPRTRTMVTTAASVEW 69 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TEVEAL LE + IK PRFN+ RDDKS+PY+ +T + P + R + Sbjct: 70 TVVSTEVEALQLEYSWIKEFDPRFNVKYRDDKSYPYLAVTLNEEFPRVQVMRGAKKKGVR 129 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP+ A+ +T++ + R F +R+C+ VF++ RPCLL I +CS PC G ++ Sbjct: 130 YFGPYGHAWAIRETVDLMLRVFPVRTCSAGVFKNAERTGRPCLLGYIGKCSAPCVGRVTP 189 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E++ + + F++G ++ ++M QA +YE A RD AL + Sbjct: 190 EEHRDLAGDFCDFMAGRTGTYIRRLEKDMTQAAEDMEYERAARLRDDAEALRRAMEKSAV 249 Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D ++ ++ A +Q G+ RG + A ++ + L+Q Y Sbjct: 250 VLADATDADLIAVAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEAVDTAGLVEHALQQLY 309 Query: 295 ---TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 + P+ +L+ E+ + + G +V + +P++G+K+ ++ NA ++ Sbjct: 310 GEESGDSVPKEVLVPALPEDPEAVSQWLADRRGSQVSLRIPQRGDKKDLMVTVQRNAQQA 369 Query: 352 HTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 + S L++ + L P R+E +D SH+ G V MVV + Sbjct: 370 LGLHKTKRASDLTTRSRALEEIAEALGLGSAPLRVECFDISHLQGDDVVASMVVFEDGLA 429 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE-------------------- 447 K++YR+F + + QDD M V+ RRF + ++ +E Sbjct: 430 RKSEYRRFQIKG--FEGQDDVRSMHEVIGRRFRRYLQEKERTGEWEDSPAPTGPVPASAP 487 Query: 448 ----------------NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENR 491 + + F P +V++DGG+ Q++AA+ L +L +++ Sbjct: 488 SVPGTAEPGSAREEPRDEPREDDGRPKRFAYPPQLVVVDGGQPQVAAAKRALDELGIDD- 546 Query: 492 ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK 551 I + +AK + E + + +VL LY +QR+RDEAHRFAIT R +R K Sbjct: 547 IAVCGLAKRLE-----EVWLPDDDDPVVLPRSSEGLYLLQRIRDEAHRFAITYQRAKRAK 601 Query: 552 AAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 SPLD++ G+G RK+ L++ FG+VK + +++ + + + GI ++ A Sbjct: 602 RIRSSPLDDVPGLGDTRKQALIKHFGSVKKLRQATIDEICEVPGIGRRTAE 652 >gi|304437121|ref|ZP_07397083.1| excision endonuclease subunit UvrC [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369880|gb|EFM23543.1| excision endonuclease subunit UvrC [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 609 Score = 525 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 201/620 (32%), Positives = 316/620 (50%), Gaps = 42/620 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 + +P+ PGVY M D G+++YVGKA L+ R++ Y S+ NHT ++ M+S I + Sbjct: 8 KLKLLPDSPGVYIMKDDHGKIIYVGKAIVLKNRVRQYFQSSRNHTPKVRAMVSHIADFET 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T EVE+L+LEAN+IK+ +PR+NI L+DDKS+PY+ +T + + P ++ R Sbjct: 68 IMTANEVESLILEANLIKKHRPRYNIRLKDDKSYPYVKVTVQEEFPRVFITRRVLRDGAR 127 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGP+ +V A+ ++ L+R F LR+C RPCL + IKRC PC G++ +E Y Sbjct: 128 YFGPYTNVTALRDSLKLLRRLFPLRTCRTMP----ERPCLEYHIKRCLAPCVGKVEAEDY 183 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + FL G +++ ++ + MN A +E+A RD+L+A+ + + Sbjct: 184 RAMIRAVLLFLEGRTDDVERELEQRMNAAAEAYHFETAARLRDQLSAVRTAAERQNIVTG 243 Query: 241 RMDCFS--LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D + + + C+Q F G+ G F L+ E ++A IL FL Q+Y Sbjct: 244 AGDQDAVGMARSAAGVCVQIFFIRGGKMIGREHFLLRGSEEESDADILRAFLEQYYNQAT 303 Query: 299 -CPENILLSEEAEETS---LLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN-----AH 349 P +LL + + + ++ G KV + P++G K I++ A N A Sbjct: 304 FVPREVLLPCAIDAAAQATIEAWLAARKGGGKVALLTPQRGTKHDIVQMATGNAAKFLAD 363 Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 + L E + +++ + L H P+R+E +D SH G V MVV + K Sbjct: 364 EETRRSLLDEQT-LGAVEELGRYLGLKHPPRRMECFDISHNQGQETVASMVVFEDGAPKK 422 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 + YR F + + DD MR V RR+ L + E PD++I+ Sbjct: 423 SDYRLFKIRSTEG-KPDDFLSMREVTTRRYVGLPEEE----------------LPDLIII 465 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILY 528 DGGKGQLS+A +++ + ++ +AK E F E + L R LY Sbjct: 466 DGGKGQLSSALEIIRHAAGHKDVPVVGLAKQ------FELVFTEGNSEPVELPRRSQALY 519 Query: 529 FIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 IQR+RDEAHRFAIT HRK R K+ S LD I GIGP R++ L FG+++ I +S E Sbjct: 520 LIQRIRDEAHRFAITFHRKLRGKRNLVSVLDHIVGIGPKRRQSLRTHFGSLEKIKEASVE 579 Query: 588 TLASIEGISKKIACKIYNHF 607 LA+ G+++ A + + F Sbjct: 580 ELAAAPGMNRTSAEAVRHFF 599 >gi|159896596|ref|YP_001542843.1| excinuclease ABC subunit C [Herpetosiphon aurantiacus ATCC 23779] gi|159889635|gb|ABX02715.1| excinuclease ABC, C subunit [Herpetosiphon aurantiacus ATCC 23779] Length = 641 Score = 525 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 203/622 (32%), Positives = 326/622 (52%), Gaps = 26/622 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVT 63 +P PGVY D A ++YVGK+ +L+ R++SY + T + ++ I + F T Sbjct: 21 NLPLSPGVYIYRDQANTIIYVGKSKSLRDRVRSYFGAPRGLTSKTRRLVQNIADFEFITT 80 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE+EALLLE N+IK+ +PR+N+LL+DDKS+PYI IT K P + + R G YFG Sbjct: 81 DTELEALLLEMNLIKKHRPRYNVLLKDDKSYPYIKIT-KEAWPRVLRVRKVIEDGGIYFG 139 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180 PFA +V TI L + F R C D +F+ R R C+ + IKRC GPC ++E+Y Sbjct: 140 PFAKASSVYATIELLNKLFAFRLCNDDMFKKHERRNRACMYYDIKRCLGPCANNCTTEEY 199 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 +++ + FL G + + MNQA +E A RD++ A+ + + Sbjct: 200 STAINQVRLFLGGKPEAILRDLKVKMNQAAEDLQFERAAYVRDQIKAVERVMERQKVLNT 259 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-D 296 D + ++ A +Q + G+ G+ F L+ E ++S FL QFY Sbjct: 260 AASDQDVIAFARDEGKAVVQVFYIRGGKLIGSEPFTLQGTEEEHPEALMSSFLTQFYDAA 319 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSH 352 P NILL + EET ++E + G+KV + VP++G+K+ +++ A NA + Sbjct: 320 ADIPPNILLPDYPEETQIIEQWLESKGGHKVSLQVPRRGDKKDLVDLAARNASQTLDQLR 379 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 Q L+ E L + L +P+RIE YD S+ G ++VG MVV + K Y Sbjct: 380 LQWLNAEQRATAGLSQLRELLNLAELPQRIECYDISNTQGTNSVGSMVVFEQGEPAKKHY 439 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLI--------KNEENLNFHPKKQEYSFPSWP 464 R+F + V+ +D A + VL+RRF++ ++ E + P + ++ P Sbjct: 440 RRFKIKT--VEGANDVASLSEVLQRRFARADDTGQTDEPESTEQTSAEPTNNDETWAVLP 497 Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMR 523 D++++DGG GQ++AA L E I ++ + KG + + + Sbjct: 498 DLILIDGGIGQVNAAAKTLAAAGFE-HIPVVGLVKGDTKGHLPYGLVKPGQRVPIAFAQN 556 Query: 524 DPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMIS 582 DP L+ +QR+ +EAHRFAI+ HRK R K S +++I GIGP RK+ L+ +FG+++ I Sbjct: 557 DPGLHLVQRIDEEAHRFAISYHRKLRTKGMLRSTMEDIPGIGPKRKKALINAFGSLEGIR 616 Query: 583 RSSPETLASIEGISKKIACKIY 604 +S E LA++ G+++K A +I Sbjct: 617 NASIEELAAVPGMTRKAAEEIK 638 >gi|317121061|ref|YP_004101064.1| excinuclease ABC, C subunit [Thermaerobacter marianensis DSM 12885] gi|315591041|gb|ADU50337.1| excinuclease ABC, C subunit [Thermaerobacter marianensis DSM 12885] Length = 758 Score = 525 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 196/659 (29%), Positives = 324/659 (49%), Gaps = 72/659 (10%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRF 60 + ++PE PGVY D G+VLYVGKA +L++R++SY S+ H RI M+ + ++ F Sbjct: 91 KAAELPEQPGVYLFKDREGQVLYVGKARSLRQRVRSYFQSSRHLPARILRMVERAADLEF 150 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT EVEAL+LE +IKR +PR+N+ LRDDK++PY+ I + P + R Sbjct: 151 IVTRNEVEALVLENTLIKRYRPRYNVRLRDDKTYPYLKIHVHEEWPRVSIARQVQDDGAR 210 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGP+ ++++ + ++R F RSC+D R RPCL + I RC PC ++Y Sbjct: 211 YFGPYTYSASLQEALRLIRRVFPYRSCSDHRLRRGGRPCLHYYIGRCLAPCAALCDRDQY 270 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + + FL G + + E++ M A + ++E A RD+L AL + Sbjct: 271 DAMIRDLIAFLEGRSRAVLERVEAEMQAAAERWEFERAAELRDQLRALHQVLEQQQVDSP 330 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D + + A Q F G+ G + + ++L+ FL Q+Y Sbjct: 331 RRGEEDAVGIARQGDRAHAQVFFVREGRIIGREHLSMTGVEGLDDGELLAAFLSQYYGRA 390 Query: 298 P-CPENILLSEEAEE--TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350 P ILL + L+ ++ G +V++ P++G KR+ +E A NA + Sbjct: 391 TFVPREILLPVDLPPGEAELIGRWLSQRRGIQVRLHRPQRGTKRRWVELAEHNARLLLAQ 450 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + T + + + L + + L P+RIE YD S++ G VG MVV+ + K Sbjct: 451 AQTDEQVRQDRARRALDELARYLELDEPPRRIECYDISNLQGAQPVGSMVVMIDGEPAKA 510 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE----------------------- 447 +YR+F + V+ +D A M+ VL RR + ++ + Sbjct: 511 EYRRFRIRT--VEAPNDFASMQEVLYRRLRRGLEAQGVPVEGPVGGPGAAAGADEPAEAR 568 Query: 448 -----------------------------NLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + F PD++++DGGKGQLSA Sbjct: 569 GDAGTDAAPGHGAAGAAAAAVPSATVRATREESDGGGAPHGFADLPDLILIDGGKGQLSA 628 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 AQ VL +L + + I + ++AK + F + + +V+ P L+ +QR+RDEAH Sbjct: 629 AQEVLDRLGLVD-IPVFALAKRFEL-----VFAPDRADPIVIPRDSPALHLLQRIRDEAH 682 Query: 539 RFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 RFA+T HR+ R++A +S L+EI GIGP R++ LL++FG+++ I+R+S + LA++ G++ Sbjct: 683 RFALTYHRQLRQRAGLHSVLEEIPGIGPRRRKALLEAFGSLEAIARASEDELAAVPGMN 741 >gi|119471718|ref|ZP_01614078.1| excinuclease ABC subunit C [Alteromonadales bacterium TW-7] gi|119445341|gb|EAW26629.1| excinuclease ABC subunit C [Alteromonadales bacterium TW-7] Length = 607 Score = 525 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 220/614 (35%), Positives = 333/614 (54%), Gaps = 27/614 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+MLD +V+YVGKA L+KR+ SY SN + ++S IN+I T+ Sbjct: 10 LKTLSSEPGVYRMLDSDNQVIYVGKAKQLKKRVSSYFRSNITDSKTRVLVSNINDIEVTL 69 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N+IK+ +PR+NILLRDDKS+PYIL+T+ HK P L HR S I+G YF Sbjct: 70 TNTETEALLLENNLIKKYQPRYNILLRDDKSYPYILLTN-HKHPRLAFHRGSRKIKGEYF 128 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF S AV +++ +Q+ F +R C D+ +R R+RPCL +Q+KRCS PC +++ + Y E Sbjct: 129 GPFPSAGAVSESLRLMQKIFPVRQCEDAYYRARSRPCLQYQLKRCSAPCVNKVTEQDYSE 188 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240 V +KFL+G + + ++ + M A+ + ++E A RD++ L +Q N Sbjct: 189 QVDYVRKFLTGKSDEVIAELIKKMEAASAELNFELAAKVRDQIMLLRKMQEQQSISGNFA 248 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296 MD H L I + G+ T+F K +S+ +IL+ FL Q+Y Sbjct: 249 EMDVVGFAHLNGLNGIHLLMIRDHKVLGSKTYFPKVPKDSSEQEILTSFLGQYYLAPGAT 308 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 + I+L E EE+S L + + KV + V +GE+ + ++ A NA S K Sbjct: 309 GRIAKEIILPFEIEESSALSEALTQISDRKVALKVVTRGERAQYLQLANKNALNSIAVKQ 368 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 ST+ S L I R+E +D SH MG + V VV G +YR++N Sbjct: 369 STQDSINKRYAQLKATLRLDDIA-RMECFDISHTMGENTVASCVVFDSQGPNTKEYRRYN 427 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + DD A M L +R+++L+ ++ PDV+ +DGGKGQL Sbjct: 428 V--TGITGGDDYAAMEFALNKRYNKLVDEDK---------------IPDVIFIDGGKGQL 470 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRLRD 535 A+ + ++ +AKG R G+E V G + ++ P L+ IQ +RD Sbjct: 471 GRAEQYFSNWSHSKMPLLVGVAKGTSRKPGLETLLVDGGRKTIPMDSDAPALHLIQHIRD 530 Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E+HRFAI HR +R+K S L+EING+G R++ LL+ G ++ + ++ E L + G Sbjct: 531 ESHRFAIAGHRNKRQKQRTQSLLEEINGVGSKRRQTLLKYLGGMQGVKAANIEQLKKVPG 590 Query: 595 ISKKIACKIYNHFH 608 IS +A KI+NH H Sbjct: 591 ISPDMAEKIFNHLH 604 >gi|255021819|ref|ZP_05293829.1| Excinuclease ABC subunit C [Acidithiobacillus caldus ATCC 51756] gi|254968643|gb|EET26195.1| Excinuclease ABC subunit C [Acidithiobacillus caldus ATCC 51756] Length = 624 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 217/606 (35%), Positives = 329/606 (54%), Gaps = 22/606 (3%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 PGVYQML G +LYVGKA NL++R+ SY H+ + M++Q+ + VT TE Sbjct: 30 SQPGVYQMLAADGHILYVGKARNLKRRVSSYFQKTRHSPKTLAMLAQVARVEVLVTHTET 89 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EAL+LEA +IK+ +P +NILLRDDKS+PY+ I P + HR + +G YFGP+ + Sbjct: 90 EALVLEAQLIKKHRPHYNILLRDDKSYPYLYIDTSSAFPRMSLHRGTQRGKGHYFGPYPA 149 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 V A+ +++ LQ+ F LR+C DSVF +R+R CL +QI+RCSGPC G I + Y + +A Sbjct: 150 VSALRESMVLLQKAFRLRTCEDSVFHNRSRACLHYQIRRCSGPCVGHIDEKSYHRDLQDA 209 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRMDC 244 +FL G + + + M A + D+E A RD++AALS IQ D Sbjct: 210 LRFLQGKSDEAIRTLQQRMLAAAERLDFEEAARRRDQIAALSKIQERQYVAQAGGGDFDV 269 Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304 + + F G+ G F + + +++++ FL Q+Y D+ P N+L Sbjct: 270 LAAVEADGQWVVFVTFIRHGRQLGGRAIFPQHPDTARGSEVMAAFLMQYYADREIPGNVL 329 Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364 ++ + L + + G KV + P++G +R+ + A+ NA+ + Q+ + Sbjct: 330 VNVLPRAAASLASALGQNAGRKVLLEQPQRGPRRRWLAMAVANANEALRQRAQRADGGRR 389 Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424 ++ + F+L +P+R+E +D SH G +A VV GE+G +K +YR+FNL + Sbjct: 390 RMRLLQELFSLDRLPERVECFDISHTRGEAATASCVVFGEDGALKAEYRRFNLRD--ITP 447 Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484 DD A M + RR+ +L++ S PD+V +DGG Q++ AQ L Sbjct: 448 GDDYAAMEQAVSRRYGRLLQEG--------------LSLPDIVFIDGGPAQVARAQAALD 493 Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 L + I + +AKG R G+E + L+ DP L IQ +RDEAHRFAIT Sbjct: 494 DLGI-REILLCGVAKGTSRRPGLEWLHTTLWTQPRQLSSGDPALLVIQEIRDEAHRFAIT 552 Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR RR KA S LD I GIGP R+ LL++FG ++ I + E L +EGI ++A + Sbjct: 553 GHRARRSKARQESELDSIGGIGPKRRVALLRAFGGLRGIRDAGVEDLQRVEGIHAELAQR 612 Query: 603 IYNHFH 608 IY HFH Sbjct: 613 IYAHFH 618 >gi|221214078|ref|ZP_03587051.1| excinuclease ABC, C subunit [Burkholderia multivorans CGD1] gi|221166255|gb|EED98728.1| excinuclease ABC, C subunit [Burkholderia multivorans CGD1] Length = 674 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 216/661 (32%), Positives = 331/661 (50%), Gaps = 62/661 (9%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D AG VLYVGKA +L+KR+ SY + RI M+++I I TVT Sbjct: 19 QLPHMPGVYRYYDAAGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H+ P + +R S Q YFGP Sbjct: 79 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-SHRFPRMAYYRGSVDKQNQYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RC+ PC G IS+E Y V Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVGAISAEDYAVDV 197 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 A +FL G + +++ + M+ + +E A R+++++L+ + + Sbjct: 198 SNAARFLLGRQSEVMKELEQKMHAFAAELKFEQAAAVRNQMSSLATVLHQQAIEVGSDSD 257 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE---------------------- 279 D ++ C+ G++ G +F Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPTHVESALTLAEGGLGDDTDADAIDAPD 317 Query: 280 ------------------STNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFK 321 S A++L F+ Q Y P +++S LLE+ + Sbjct: 318 VPAEAPAGEPGSTRDTTASIEAEVLDAFIAQHYLGNRVPPVLVVSHAPASRDLLEL-LSE 376 Query: 322 QYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP-- 379 Q G++V + QG++R + A NA + + LS + S Q + + L Sbjct: 377 QAGHRVSLVRQPQGQRRAWLSMAEQNAQIALARLLSEQGSQQARTRALAETLGLECDDLA 436 Query: 380 -KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERR 438 RIE +D SH MG + VV + +YR++N+ + DD A MR VL RR Sbjct: 437 TLRIECFDISHTMGEATQASCVVYHHHKMQSGEYRRYNI--TGITPGDDYAAMRQVLTRR 494 Query: 439 FSQLIK---------NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE 489 + ++++ + ++ +Q + P++V++DGGKGQ+ A+ V +L ++ Sbjct: 495 YEKMVEQAAQAAAADDAAGIDGESTRQAEASSLLPNIVLIDGGKGQVEIARQVFTELGLD 554 Query: 490 NRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKR 548 + ++ +AKG R G+E G L L L + ++RDEAHRFAIT R + Sbjct: 555 TSM-LVGVAKGEGRKVGLETLVFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAK 613 Query: 549 RKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 R KA S L+E+ G+G R++ LL FG ++ + +S E LAS++GIS +A +IY Sbjct: 614 RAKARQTSRLEELEGVGAKRRQRLLARFGGLRGVVAASVEELASVDGISHALAEQIYKQL 673 Query: 608 H 608 H Sbjct: 674 H 674 >gi|329908611|ref|ZP_08274901.1| Excinuclease ABC subunit C [Oxalobacteraceae bacterium IMCC9480] gi|327546671|gb|EGF31628.1| Excinuclease ABC subunit C [Oxalobacteraceae bacterium IMCC9480] Length = 625 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 211/619 (34%), Positives = 326/619 (52%), Gaps = 34/619 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P PGVY+ D VLYVGKA +L+KR+ SY + RI M+ +I + TVT Sbjct: 26 KLPHLPGVYRYFDADNNVLYVGKARDLKKRVSSYFQKTLSSSRIAMMVERIARLETTVTR 85 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EAL+LE N+IK L+PRFNIL RDDKS+PY+ IT + P + +R S + +FGP Sbjct: 86 SEAEALILENNLIKALQPRFNILFRDDKSYPYLKITGQ-AFPRMAYYRGSVDKRSQFFGP 144 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV++++ LQ+ F LR+C DSV+ +RTRPCLL QI RCS PC EIS E Y V Sbjct: 145 FPSAWAVKESMQILQKVFLLRTCEDSVYANRTRPCLLHQIHRCSAPCVAEISQEDYNLDV 204 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 A KFL G + + + M+ + +E A R++++ALS + + Sbjct: 205 ENAAKFLRGRQSEVMQTLEGKMHAYAGELKFEQAAGVRNQISALSRVLHQQTMETGSDAD 264 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT-------DSESTNAQILSYFLRQFY 294 +D ++ AC+ G++ G +F ++ + ++L FL Q Y Sbjct: 265 IDIIAVIVQGGRACVNLAMVRGGRHLGDRAYFPTHVDNALATAEDAIDVEVLKAFLAQHY 324 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 +K P ++L+ E ++ L+ +Q G+++ + Q ++R+ +E A A S + Sbjct: 325 LEKFIPSTLILNLEFDQPELMLALM-EQCGHRINLLFQPQAQRRQWLEMACKGAEISLAR 383 Query: 355 KLSTEISHQMILKDFTKKFALPHIPK---RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 LS + S Q + + AL R+E +D SH G + VV + + Sbjct: 384 LLSEQGSQQSRTRALVEVLALDSADIETLRVECFDISHTQGEATQASCVVFHHHAMQNGE 443 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YR++N++ + DD A MR VL RR+ ++ + PD+V++DG Sbjct: 444 YRRYNIND--ITPGDDYAAMRQVLTRRYEKVANGD--------------GVMPDIVLIDG 487 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFI 530 GKGQ+ A+ V +L ++ + I+ +AKG R G+E G L L I Sbjct: 488 GKGQVEVARQVFAELGLDISL-IVGVAKGEGRRVGLETLVFVDGREARELGKESAALMLI 546 Query: 531 QRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 ++RDEAHRFAIT R RR K S L+EI GIG R++ LL FG+++ ++ +S E L Sbjct: 547 AQIRDEAHRFAITGMRARRAKTRQASRLEEIEGIGAKRRQKLLARFGSLREVTNASVEEL 606 Query: 590 ASIEGISKKIACKIYNHFH 608 S++GIS+++A IY H Sbjct: 607 TSVDGISRQLAEDIYRQLH 625 >gi|311898903|dbj|BAJ31311.1| putative UvrABC system protein C [Kitasatospora setae KM-6054] Length = 675 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 182/646 (28%), Positives = 308/646 (47%), Gaps = 47/646 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTC 64 +P PGVY+ D GRV+YVGKA +L++R+ SY N R M++ ++ +TV Sbjct: 14 IPTSPGVYKFRDAHGRVIYVGKAKSLRQRLSSYFQDVANLHPRTATMVTTAASVEWTVVS 73 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TEVEAL LE + IK PRFN+ RDDKS+P + +T + P + R + YFGP Sbjct: 74 TEVEALQLEYSWIKEFDPRFNVKYRDDKSYPELAVTLDEEYPRVQVTRGAHKKGVRYFGP 133 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKYM 181 + A+ +T++ L R F +R+C++ VF+ RPCLL I +C+ PC G +S+ ++ Sbjct: 134 YGHAWAIRETVDLLLRVFPVRTCSNGVFKRARQVGRPCLLGYIGKCAAPCVGRVSAAEHR 193 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 E E F++G ++ + M +A + +YE A RD L AL N + Sbjct: 194 ELAEEFCDFMAGRTGGHLRRLEQQMREAAAEMEYEKAARLRDDLGALQRAMEKNAVVLGD 253 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D +L ++ A +Q G+ RG + + A ++ + L+Q Y + Sbjct: 254 GTDADLLALAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEDVDTAGLVEHALQQLYGENS 313 Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P +L+ + + + G +V + +P++G+K+ ++E NA ++ Sbjct: 314 EQVPREVLVPALPD--EAVHVWLSGLRGAQVDLRIPQRGDKKDLMETVQRNAQQALALHK 371 Query: 357 STEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + S L++ L +P RIE +D SH+ G V MVV + K++Y Sbjct: 372 TRRASDLTTRSRALQEIADALELDSVPLRIECFDISHLQGEDVVASMVVFEDGLARKSEY 431 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNF--------------------- 451 R+F + + QDD M V+ RRF + ++ E Sbjct: 432 RRFQIKG--FEGQDDVRSMHEVITRRFRRYLQERERTGEWAVPEQAPEGAPEGAPEGDGS 489 Query: 452 --HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 + F P ++++DGG+ Q++AA L +L +++ + + +AK + E Sbjct: 490 PLDENGRPRRFAYPPQLLVVDGGQPQVAAAVRALAELGIDD-VAVCGLAKRLE-----EV 543 Query: 510 FFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRK 568 + + + +VL LY +QR+RDEAHRFAIT R +R K LD + G+G R+ Sbjct: 544 WLPGQDDPVVLPRSSEGLYLLQRVRDEAHRFAITYQRAKRAKRLTAGELDSVPGLGETRR 603 Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 R LL+ FG++K + ++ + L + GI ++ A + T Sbjct: 604 RALLKHFGSLKKLRAATVDELCEVPGIGRRTAETVAAALASRTPSA 649 >gi|239931949|ref|ZP_04688902.1| excinuclease ABC subunit C [Streptomyces ghanaensis ATCC 14672] gi|291440316|ref|ZP_06579706.1| UvrABC system protein C [Streptomyces ghanaensis ATCC 14672] gi|291343211|gb|EFE70167.1| UvrABC system protein C [Streptomyces ghanaensis ATCC 14672] Length = 695 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 185/635 (29%), Positives = 306/635 (48%), Gaps = 48/635 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 ++P+ PGVY+ D RV+YVGKA +L++R+ +Y N R M++ ++ +TV Sbjct: 13 EIPDSPGVYRFRDEHRRVIYVGKAKSLRQRLANYFQDLANLHPRTRSMVTTAASVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE + IK PRFN+ RDDKS+PY+ +T + P + R YFG Sbjct: 73 STEVEALQLEYSWIKEYDPRFNVKYRDDKSYPYLAVTMNEEFPRVQVMRGHKKKGVKYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P+A A+ T++ L R F +R+C+ VF++ RPCLL I +CS PC IS+E + Sbjct: 133 PYAHAWAIRDTVDLLLRVFPVRTCSAGVFKNAARTGRPCLLGYIGKCSAPCVERISAEDH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 E F++G ++ + M QA + +YE A RD + AL N + Sbjct: 193 RGLAEEFCDFMAGRTGTYLRRLEKRMAQAAEEMEYERAARLRDDIEALKKAMEKNAVVLA 252 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D ++ ++ A +Q G+ RG + E T ++ + L+Q Y ++ Sbjct: 253 DATDADLVAVAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEEITTGALVEHALQQLYGEE 312 Query: 298 P---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P +L+ + ++ ++ G V + +P++G+K+ ++E NA ++ Sbjct: 313 SGDTVPREVLVPALPDPVEPVQQWLTERRGSGVSLRIPQRGDKKALMETVQRNAQQALAL 372 Query: 355 KLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + S L++ L P RIE YD SH+ G V MVV + K+ Sbjct: 373 HKTKRASDLTTRSRALEEIADALDLDSAPLRIECYDVSHLQGDDVVASMVVFEDGLARKS 432 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNF------------------- 451 +YR+F + QDD M V+ RRF + + +E Sbjct: 433 EYRRFQIKG--FSGQDDVRSMHEVVTRRFRRYLAEKERTGEWTDGEDGDKGTAPDGLAEP 490 Query: 452 ------HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSA 505 + F P +V++DGG Q++AA+ L +L +++ I + +AK + Sbjct: 491 PASTLTEDDGRPKRFAYPPQLVVVDGGAPQVAAARRALDELGIDD-IAVCGLAKRLE--- 546 Query: 506 GMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYS-PLDEINGIG 564 E + + +VL LY +QR+RDEAHRFAIT R +R + S PLD++ G+G Sbjct: 547 --EVWLPGDDDPVVLPRTSEGLYLLQRIRDEAHRFAITYQRTKRAQRFRSGPLDDVPGLG 604 Query: 565 PLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 RK+ L++ FG+V+ + ++ E + + GI +K Sbjct: 605 ETRKQALIKHFGSVRKLRAATIEQICEVPGIGRKT 639 >gi|149928377|ref|ZP_01916617.1| Excinuclease ABC, C subunit [Limnobacter sp. MED105] gi|149822912|gb|EDM82158.1| Excinuclease ABC, C subunit [Limnobacter sp. MED105] Length = 651 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 213/650 (32%), Positives = 332/650 (51%), Gaps = 63/650 (9%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 +++ PGVY+M+D G V+YVGKA NL+KR+ SY + + R +HM+ +I + T Sbjct: 21 LKELTTRPGVYRMIDANGTVMYVGKAKNLKKRVSSYFQKTHASPRTSHMVERIVRVDVTP 80 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N+IK L PR+NIL RDDKS+PY+ +T+ HK P + +R + + +F Sbjct: 81 TRTEAEALLLENNLIKSLSPRYNILFRDDKSYPYLRLTN-HKYPRVAYYRGAVDKKSQFF 139 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF + AV+++I LQR F LR+C D+VF HR+RPCL QI+RCS PC IS E+Y + Sbjct: 140 GPFPNAWAVKESIQVLQRVFLLRTCEDTVFSHRSRPCLQAQIQRCSAPCVNWISPEEYAK 199 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242 V A +FL G + ++ + M +A+ ++E A ++R++L ALS + Sbjct: 200 DVEAASRFLRGDHKSVLANLEEKMLEASGLLEFEKAAMYRNQLGALSRVLQKQSVDTTGG 259 Query: 243 DC----FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFYTD 296 D ++ C+ G++ G F S + ++L FL Q Y D Sbjct: 260 DDDADIIAVVIKGGAVCVNLAMVRGGRHLGDKPMFPSVAQASEDIGPEVLEAFLSQAYVD 319 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 +P P ++++++ + LL +Q G K+ + Q E+RK ++ A+ NA + +++ Sbjct: 320 RPIPNLLIVNQDLDAPELLMA-LSQQAGKKINLIRQPQSERRKWLDMAVDNAEIAIARRI 378 Query: 357 STEISHQMILKDFTKKFALPHIPK------------------------------------ 380 + + S Q + + L + Sbjct: 379 AEQGSAQFRTRALVETLGLETRLEEALQASEADGLLSGTAAGAEPVADSPAEEIDLLATL 438 Query: 381 RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFS 440 R+E +D SH G + VV + +YR++N+ + DD A MR + RR+ Sbjct: 439 RVECFDISHTAGEATQASCVVFHNHDMQSREYRRYNIEG--ITPGDDYAAMRQAVTRRYQ 496 Query: 441 QLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500 + + + P VV++DGGKGQ+ A+ V ++L ++ + I+ + KG Sbjct: 497 R--------------EGKTPIVMPHVVLIDGGKGQIEVARQVFEQLGLDIGL-IVGVKKG 541 Query: 501 PKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLD 558 R G+E G L L P L I ++RDEAHRFAIT R +R KA S LD Sbjct: 542 ENRKVGLETLVFPDGRPSLELGPGHPALMLIAQIRDEAHRFAITGMRAKRAKARQASELD 601 Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 EI GIG RK+ LL FG ++ + +S E L ++EGISK +A +IY H Sbjct: 602 EIEGIGARRKQKLLTRFGGLRGVKAASVEDLQTVEGISKTLAEEIYRRLH 651 >gi|332976925|gb|EGK13746.1| excinuclease ABC subunit C [Psychrobacter sp. 1501(2011)] Length = 614 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 201/614 (32%), Positives = 309/614 (50%), Gaps = 29/614 (4%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 ++MP PGVY+M+ G +LYVGKA +L+ R+ SY + ++S+I+NI +T Sbjct: 22 KRMPNLPGVYKMVGKNGDILYVGKAKSLKSRVNSYFAKTIDHPKTRALVSRIHNIETIIT 81 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI-QGSYF 122 +E EALLLE N+IK +P +N+LLRDDKS+ Y+ I+ P L R + +G +F Sbjct: 82 RSETEALLLEQNLIKEHRPPYNVLLRDDKSYLYVFISADDPYPRLAYGRGKAKHQKGKFF 141 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF S A ++T+ +Q+ F +R C ++ FR R RPCL +QIKRC PC G ++ E Y Sbjct: 142 GPFPSAHAAKETLALMQKMFQMRQCTNTFFRQRQRPCLEYQIKRCRAPCVGLVTPEDYAT 201 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--N 240 V +FL G + ++ + M A D+E A +RD+L+ L +Q+ Sbjct: 202 DVQNTIRFLKGDSSDIHAALIEKMEGAADSLDFEKAAFYRDQLSMLREVQSRQAVYTVQG 261 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KP 298 D S+ + C+ G+ G +F DS + LS F+ FY Sbjct: 262 EADVISIASQAGMTCVNVLTVRGGRVLGGKNYFPDVDSSEPISDNLSAFITSFYFQVTDD 321 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P I++S E + L+ + + K I + + + ++ A +NA+ + KL Sbjct: 322 LPAEIIISHELPDQQALQEALSTHFDSKTVIKTNVREHRAEWLDLAKLNANNALKTKLGD 381 Query: 359 EISHQMILKDFTKK--FALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + + RIE +D SH MG + + VV + G K YR++ Sbjct: 382 YLELHARFGALKEVLQPVTKANIDRIECFDISHTMGEATIASCVVFDQGGARKRDYRQYA 441 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 +H V+ DD A M L RR+ + + PD++++DGGKGQL Sbjct: 442 IHG--VQDGDDYAAMAQALTRRYKK-------------------HALPDILLVDGGKGQL 480 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 + A+ VL +L + N +I +AKG R AG+E E L L M L+ I +RDE Sbjct: 481 NMAKNVLTELGILNDTLLIGVAKGEGRKAGLEVLHFINHEPLDLPMDSKALHLIMNIRDE 540 Query: 537 AHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 AHRFAIT HRK+R K+ + S L+ I G+G R+R LL FG ++ + +S + L + GI Sbjct: 541 AHRFAITAHRKKRDKRRSSSVLEAIPGLGEKRRRDLLNHFGGLQQLLGASQQELEGVNGI 600 Query: 596 SKKIACKIYNHFHK 609 K +A IY H+ Sbjct: 601 GKVMANTIYKVLHE 614 >gi|108799362|ref|YP_639559.1| excinuclease ABC subunit C [Mycobacterium sp. MCS] gi|119868478|ref|YP_938430.1| excinuclease ABC subunit C [Mycobacterium sp. KMS] gi|119367675|sp|Q1B9D1|UVRC_MYCSS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|189038070|sp|A1UFN2|UVRC_MYCSK RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|108769781|gb|ABG08503.1| Excinuclease ABC subunit C [Mycobacterium sp. MCS] gi|119694567|gb|ABL91640.1| Excinuclease ABC subunit C [Mycobacterium sp. KMS] Length = 676 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 192/644 (29%), Positives = 296/644 (45%), Gaps = 47/644 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA +L+ R+ SY + R M+ + +TV Sbjct: 13 SIPVEPGVYRFRDPHGRVIYVGKAKSLRSRLNSYFADLSGLAPRTRQMVMTAAKVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE N IK PRFNI RDDKS+P + +T + P L +R YFG Sbjct: 73 NTEVEALQLEYNWIKEFDPRFNIRYRDDKSYPVLAVTLNEEFPRLKVYRGPRKKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F R+C+ VF+ RPCLL I +CS PC G +S+E++ Sbjct: 133 PYSHAWAIRETVDLLTRVFPARTCSAGVFKRHNQIDRPCLLGYIDKCSAPCVGRVSAEQH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + V + FL+G L + R M A D+E A RD + AL ++ Sbjct: 193 RQIVLDFCDFLAGKTDRLVRDLERKMTAAAEDLDFERAARLRDDIGALRRALEKQTVVFG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT---DSESTNAQILSYFLRQFY 294 D + + A +Q G+ RG + ++ ES Q++ FL QFY Sbjct: 253 DGTDADVVAFADDDLEAAVQVFHVRGGRVRGQRGWIVEKSGEPGESGEGQLVEQFLTQFY 312 Query: 295 TD--------------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQ 334 D P P +L+ + L + G +V + VP++ Sbjct: 313 GDQAELGSAGDNAGDSGQDEATNPVPRQVLVPCLPDNADELTEWLSQLRGSRVALRVPQR 372 Query: 335 GEKRKIIEQALINAHRSHTQKLSTEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHI 390 G+K+ + E NA + Q L+ L P RIE D SH+ Sbjct: 373 GDKKALFETVQRNAKEALAQHKLKRAGDFTARTAALQSIQDTLGLADAPLRIECIDISHV 432 Query: 391 MGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEE-N 448 G V +VV + K+ YR + + + DD A + V RRF + + + + Sbjct: 433 QGTDVVASLVVFEDGLPRKSDYRHYAIREAAGDGRSDDVASIAEVTRRRFYRHLHDTQHP 492 Query: 449 LNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGME 508 + + F P++ ++DGG Q++AAQ VL +L + + + +I +AK + E Sbjct: 493 TELSAEGKSRKFAYPPNLFVVDGGAPQVNAAQAVLDELGISD-VAVIGLAKRLE-----E 546 Query: 509 KFFVKKG----EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGI 563 + E ++L LY +QR+RDEAHRFAIT HR +R K S LD + G+ Sbjct: 547 VWVPSGSDLGPEPIILPRNSEGLYLLQRVRDEAHRFAITYHRSKRSKRMTASALDSVRGL 606 Query: 564 GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 G R++ L+ FG+V + +S E + ++ GI A + Sbjct: 607 GEHRRKALVTHFGSVARLKEASVEEITAVPGIGVTTARAVLEAL 650 >gi|126435020|ref|YP_001070711.1| excinuclease ABC subunit C [Mycobacterium sp. JLS] gi|189038069|sp|A3PZ93|UVRC_MYCSJ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|126234820|gb|ABN98220.1| Excinuclease ABC subunit C [Mycobacterium sp. JLS] Length = 676 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 192/644 (29%), Positives = 296/644 (45%), Gaps = 47/644 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA +L+ R+ SY + R M+ + +TV Sbjct: 13 SIPVEPGVYRFRDPHGRVIYVGKAKSLRSRLNSYFADLSGLAPRTRQMVMTAAKVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE N IK PRFNI RDDKS+P + +T + P L +R YFG Sbjct: 73 NTEVEALQLEYNWIKEFDPRFNIRYRDDKSYPVLAVTLNEEFPRLKVYRGPRKKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F R+C+ VF+ RPCLL I +CS PC G +S+E++ Sbjct: 133 PYSHAWAIRETVDLLTRVFPARTCSAGVFKRHNQIDRPCLLGYIDKCSAPCVGRVSAEQH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + V + FL+G L + R M A D+E A RD + AL ++ Sbjct: 193 RQIVLDFCDFLAGKTDRLVRDLERKMTAAAEDLDFERAARLRDDIGALRRALEKQTVVFG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT---DSESTNAQILSYFLRQFY 294 D + + A +Q G+ RG + ++ ES Q++ FL QFY Sbjct: 253 DGTDADVVAFADDDLEAAVQVFHVRGGRVRGQRGWIVEKSGEPGESGEGQLVEQFLTQFY 312 Query: 295 TD--------------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQ 334 D P P +L+ + L + G +V + VP++ Sbjct: 313 GDQAELGSAGDNAGDSGQDEATNPVPRQVLVPCLPDNADELTEWLSQLRGSRVALRVPQR 372 Query: 335 GEKRKIIEQALINAHRSHTQKLSTEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHI 390 G+K+ + E NA + Q L+ L P RIE D SH+ Sbjct: 373 GDKKALFETVQRNAKEALAQHKLKRAGDFTARTAALQSIQDTLGLADAPLRIECIDISHV 432 Query: 391 MGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEE-N 448 G V +VV + K+ YR + + + DD A + V RRF + + + + Sbjct: 433 QGTDVVASLVVFEDGLPRKSDYRHYAIREAAGDGRSDDVASIAEVTRRRFYRHLHDTQHP 492 Query: 449 LNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGME 508 + + F P++ ++DGG Q++AAQ VL +L + + + +I +AK + E Sbjct: 493 TELSAEGKSRKFAYPPNLFVVDGGAPQVNAAQAVLDELGISD-VAVIGLAKRLE-----E 546 Query: 509 KFFVKKG----EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGI 563 + E ++L LY +QR+RDEAHRFAIT HR +R K S LD + G+ Sbjct: 547 VWVPSGSDLGPEPIILPRNSEGLYLLQRVRDEAHRFAITYHRSKRSKRMTASALDSVRGL 606 Query: 564 GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 G R++ L+ FG+V + +S E + ++ GI A + Sbjct: 607 GEHRRKALVTHFGSVARLKEASVEEITAVPGIGVTTARAVLEAL 650 >gi|300723488|ref|YP_003712793.1| DNA exisiton repair enzyme together with UvrAB [Xenorhabdus nematophila ATCC 19061] gi|297630010|emb|CBJ90645.1| DNA exisiton repair enzyme together with UvrAB [Xenorhabdus nematophila ATCC 19061] Length = 610 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 217/618 (35%), Positives = 333/618 (53%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D AG V+YVGKA +L+KR+ SY + + + ++ I I TV Sbjct: 11 LKTVTSQPGVYRMYDTAGTVIYVGKAKDLKKRLSSYFRTQVSSRKTESLVQNIAQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+PYI ++ P L +R + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLS-GDTHPRLALYRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYM 181 GPF + AV +++ LQ+ F +R C DSV+R+R+RPCL +QI RC PC ++ E+Y Sbjct: 130 GPFPNSHAVRESLALLQKLFPIRQCEDSVYRNRSRPCLQYQIGRCLAPCVKGFVTDEEYH 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IY 239 + V + FL+G + + +K+ M +A+ + +E A +RD++ A+ + Sbjct: 190 QQVEYVRLFLAGKDKQVMDKLVNKMEEASQQLKFEDAARYRDQIQAVRQVTERQFVSGEG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295 + +D S+ +AC+ F G+ G+ +++ + +++ +++ FL QFY Sbjct: 250 DDLDVISVAFEAGIACVHVLFIRQGKILGSRSYYPRIPADTKLDEVVQTFLGQFYLQGSQ 309 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ P ILL E LLE S + G KV I +G + + ++ A NA + T K Sbjct: 310 NRTLPTEILLDFTLSEKELLEASLSELSGRKVHIQARPRGNRARYLKLARTNAATALTTK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L L +R+E +D SH MG V VV NG V+ +YR++ Sbjct: 370 LSQQSTIHQRLASLATFAGLE-KIQRMECFDISHTMGEQTVASCVVFDSNGPVRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I + PD++ +DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLFRRYGKAIDQSK---------------IPDIIFIDGGKGQ 471 Query: 476 LSAAQGVLKKLNVENR---ITIISIAKGPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQ 531 L+ A V L VE +IS+AKG R AG+E FF +GE + L L+ IQ Sbjct: 472 LARAIEVFNSLEVEWNKYHPKLISVAKGSDRKAGLETLFFRAEGEGVALPPDSLALHLIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AIT HR+RR+K S L+ I GIGP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHNHAITGHRQRREKVKKTSTLESIEGIGPKRRQMLLKYMGGLQPLRNASVEEIA 591 Query: 591 SIEGISKKIACKIYNHFH 608 + IS +A KIYN Sbjct: 592 KVPSISYALAEKIYNALK 609 >gi|283458163|ref|YP_003362780.1| nuclease subunit of the excinuclease complex [Rothia mucilaginosa DY-18] gi|283134195|dbj|BAI64960.1| nuclease subunit of the excinuclease complex [Rothia mucilaginosa DY-18] Length = 646 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 201/641 (31%), Positives = 319/641 (49%), Gaps = 46/641 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVT 63 ++P PGVY+ D GRV+YVGKA NL+ R+ +Y S + + M+ ++ +TV Sbjct: 13 EIPTDPGVYRFRDADGRVIYVGKAKNLRNRLNNYFASPQTLSPKTYAMVHTAASVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E+E+L LE IK PRFNI RDDKS+PY+ IT P R YFG Sbjct: 73 ASEMESLQLEYTWIKEFSPRFNIAFRDDKSYPYLAITVNDVYPRAMVTRGERRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T+++L R F +R+C + VF ++ RPCLL I +C+ PC G+IS+E++ Sbjct: 133 PYSQAWAIRETLDALLRVFPVRTCTNGVFNRAKNSGRPCLLGYIDKCAAPCVGKISAEEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + +F+ GG ++ M A D+E A I RD +AAL+ N + Sbjct: 193 RKLARGLTRFMGGGAEKHIAQLTAEMKAAAADMDFERAAILRDDIAALTKAFERNAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD- 296 D F+ + A +Q F G+ RG + ++ ++ST+AQ++ + Q Y+D Sbjct: 253 ATVDADLFAYAEDDLEASVQVFFVRGGRIRGQRGWIVEKVNDSTDAQLIEQLIAQVYSDI 312 Query: 297 ----------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKI 340 P ++L+ E E L + G V+I+VP++G+K ++ Sbjct: 313 AASLASQKDAEKSLNSYDIPRSVLVPVEPENKEQLASWLAEVRGGPVEISVPQRGDKAEL 372 Query: 341 IEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAV 396 ++ NA +S T S + L + + LP RIE YD SH+ G + V Sbjct: 373 MKTVAENARQSLTLHKSRRAGDLTTRSASLVELQEALELPDPLLRIECYDISHVQGTNVV 432 Query: 397 GCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP--- 453 MVV + KN YR +++ + +DD A M V+ RRF + + + P Sbjct: 433 ASMVVFEDGMPAKNAYRTYSITGD--AARDDTASMYDVITRRFKRHLAQQAEREAAPVHS 490 Query: 454 ------KKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507 + F P++V++DGG Q++AA L L + + + + IAK + Sbjct: 491 GEIDASTPEPAKFAYPPNLVLVDGGPPQVAAASAALSDLGITD-VYVAGIAKRLE----- 544 Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPL 566 E + +VL LY +QR+RDEAHRFAIT HR +R KA S LDE+ G+G + Sbjct: 545 ELWLPDDDYPVVLPRTSQALYLVQRIRDEAHRFAITFHRSKRGKAMVASALDEVPGLGEV 604 Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 ++ L++ FG+V I ++S E L ++ GI +A KI Sbjct: 605 KRAALIKHFGSVAQIKQASAEELTAVPGIGPALAQKILAAL 645 >gi|296101739|ref|YP_003611885.1| excinuclease ABC subunit C [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056198|gb|ADF60936.1| excinuclease ABC subunit C [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 610 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 213/618 (34%), Positives = 336/618 (54%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++ I NI TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVALIQNIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FL+G + + ++ M +A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLAGKDDQVLTQLIARMEKASAALEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + LAC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGLACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G +V + +G++ + ++ A NA + + K Sbjct: 310 MRTLPSEILLDFNLADKTLLADSLSELAGRRVNVQTKPRGDRARYLKLARTNAATALSTK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP + R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTVSQRLTALATLLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I+ + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L A+ V + L+V +N ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LGQAKAVFESLDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI+ HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDESHDHAISGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLLNASMEEIA 591 Query: 591 SIEGISKKIACKIYNHFH 608 + GIS+ +A KIY Sbjct: 592 KVPGISQGLAEKIYYSLK 609 >gi|266621145|ref|ZP_06114080.1| excinuclease ABC subunit C [Clostridium hathewayi DSM 13479] gi|288867215|gb|EFC99513.1| excinuclease ABC subunit C [Clostridium hathewayi DSM 13479] Length = 625 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 195/620 (31%), Positives = 328/620 (52%), Gaps = 21/620 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M D ++YVGKA +L+ R++ Y S+ N T +I M+S+I + Sbjct: 14 ELKKLPAQPGVYIMHDKKDEIIYVGKAISLKNRVRQYFQSSRNKTSKIEQMVSRIARFEY 73 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE N+IK +PR+N +L+DDK++PYI +T P + RD + Sbjct: 74 IITDSELEALVLECNLIKEHRPRYNTMLKDDKTYPYIKVTVYEDFPRVLFSRDMKKDKSK 133 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S +V+ TI+ + + + +R+C ++ + R RPCL + IK+CS PC G I+ E Sbjct: 134 YFGPYTSAGSVKDTIDLIHKLYKIRTCNRNLPKDIGRDRPCLNYHIKQCSAPCQGYINKE 193 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + + +A FL G + + M A+ + D+E AI +RD L ++ + Sbjct: 194 EYGKAISQALDFLGGKYDPVISMLEEKMQAASDEMDFEKAIEYRDLLTSVRAVAQKQKIT 253 Query: 239 YNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + M D ++ ++ A +Q F G+ G + + + + QIL+ F++QFY Sbjct: 254 SSSMEDRDIIAMAKDEKDAVVQVFFVREGRLIGREHYHVAIATAEDDRQILTSFVKQFYA 313 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HR 350 P P + + E E++ ++ + G KVK+ VP++GEK +++E A NA + Sbjct: 314 GTPFVPRELWVQTELEDSGIIREWLSAKRGQKVKLVVPQKGEKERLVELAERNAALVLSQ 373 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E+ + + + + RIE +D S+I G +VG M+V + +N Sbjct: 374 DKEKIKREELRTIGAMNEVSGWLGIT-GVHRIEAFDISNISGFESVGSMIVYEDGKPKRN 432 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEY-SFPSWPDVVIL 469 YRKF + VK +D A MR VL RRFS + L +E+ SF +PD++++ Sbjct: 433 DYRKFKIKW--VKGANDYASMREVLTRRFSHGLDEAAALKEKGVDEEFGSFTKFPDLLMM 490 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGG+GQ++ A VL +L + I + + K + ++ R Sbjct: 491 DGGRGQVNIALEVLDELKLS--IPVCGMVKDDNHRTRG---LYYNNVEIPIDKRSEGFKL 545 Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 I R++DEAHRFAI HR R K +S LD+I IGP R++ L++ F ++ I ++ E Sbjct: 546 ITRIQDEAHRFAIEYHRSLRSKGQVHSILDDIPDIGPTRRKALMRYFKDIEAIKEATIEA 605 Query: 589 LASIEGISKKIACKIYNHFH 608 L + G++ K A +Y+ FH Sbjct: 606 LTAAPGMNAKSAQSVYDFFH 625 >gi|240948997|ref|ZP_04753351.1| excinuclease ABC subunit C [Actinobacillus minor NM305] gi|240296584|gb|EER47202.1| excinuclease ABC subunit C [Actinobacillus minor NM305] Length = 623 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 215/615 (34%), Positives = 333/615 (54%), Gaps = 32/615 (5%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 P PGVY+M D G ++YVGKA +L+KR+ SY S + + ++SQI +I T+T +E Sbjct: 26 PHNPGVYRMYDDKGTIIYVGKAKDLKKRLSSYFRSTLASRKTEALVSQIAHIDTTITHSE 85 Query: 67 VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126 EALLLE N IK +P++N+LLRDDKS+PYIL+T KH+ P L R S I G YFGP+ Sbjct: 86 TEALLLEHNYIKENQPKYNVLLRDDKSYPYILLT-KHQHPRLASFRGSKKIAGEYFGPYP 144 Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVH 185 + AV +T+N LQ+ F +R C DS +++R+RPCL +QI RC PC S +Y + V Sbjct: 145 NAGAVRETLNLLQKLFPIRQCEDSYYKNRSRPCLQYQIGRCLAPCVEGIYSQREYDQQVE 204 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRM 242 + FL G + + E + M +A D+E+A RD++ + + + + Sbjct: 205 YVRLFLQGKDQQVIEHLISKMEKAAEDLDFEAAARFRDQIQQVRAVTEKQFVSNERLDDL 264 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKP 298 D S+ + +AC+ F G+ G+ ++F K + + A++ F+ QFY + Sbjct: 265 DIISIAYQHGIACVHILFVRQGKVLGSRSYFPKVPNHTELAELSDTFIGQFYLQMNQHRT 324 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P I++ E LE +Q G+KV IT +GEK + + A NA + T +L Sbjct: 325 IPHQIIIDHPVSEVEALEKVLSEQAGHKVSITDKVRGEKSRYLALAKTNAMAALTLQLKQ 384 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + Q + +LP I R+E +D SH MG V VV ENG +K+ YR+FN+ Sbjct: 385 DARIQTRYEALQAVLSLPKIA-RMECFDISHTMGEQTVASCVVFDENGPLKSDYRRFNIE 443 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + DD A M L +R+ + + E+ PD++ +DGGKGQL+ Sbjct: 444 G--ITGGDDYAAMEQALLKRYDKPLPPEK---------------IPDIIFIDGGKGQLNR 486 Query: 479 AQGVLKKLNVE---NRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLR 534 A L VE ++ +I +AKG +R AG+E + K + + L P L+ IQ +R Sbjct: 487 ALETFANLKVEWDKSKPLLIGVAKGVERKAGLETLLISKWDKEIHLPPDSPALHLIQHIR 546 Query: 535 DEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE+H AI+ HRK+R+KA S L+ I G+G R++ LL+ G ++ + ++ E + S+ Sbjct: 547 DESHNHAISGHRKKRQKAFTESGLESIAGVGAKRRQALLKYLGGMQGVKAATLEEIQSVP 606 Query: 594 GISKKIACKIYNHFH 608 GIS +A I++ H Sbjct: 607 GISASLAETIFDTLH 621 >gi|225023379|ref|ZP_03712571.1| hypothetical protein EIKCOROL_00237 [Eikenella corrodens ATCC 23834] gi|224943857|gb|EEG25066.1| hypothetical protein EIKCOROL_00237 [Eikenella corrodens ATCC 23834] Length = 608 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 232/615 (37%), Positives = 329/615 (53%), Gaps = 29/615 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+ D G+VLYVGKA NL++R+ SY N+ + RI M+ QI +I TVT Sbjct: 12 NLPNLPGVYRFSDKDGQVLYVGKAVNLKRRVGSYFQKNDLSPRIALMVRQIAHIEITVTR 71 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EAL+LE N IK L P++NIL RDDKS+PY+++T H P + +R S YFGP Sbjct: 72 SETEALILENNFIKALSPKYNILFRDDKSYPYLMLT-GHDYPQMAYYRGSLKKTNQYFGP 130 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + + AV +I LQ+ F LR+C DSVF HR RPCLL+QIKRCS PC G IS E Y V Sbjct: 131 YPNSYAVRDSIQILQKVFLLRTCEDSVFEHRDRPCLLYQIKRCSAPCVGHISQEDYRTSV 190 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---- 240 EA FL+G L + + M QA D+E A +RD++ AL IQ+ N Sbjct: 191 EEAATFLNGKADRLLQSLTTKMQQAAEALDFEHAARYRDQIQALGKIQSQQFIDSNNPNA 250 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLK--TDSESTNAQILSYFLRQFYTD 296 +D +L + CI G+ G +FF + A F Q Y Sbjct: 251 AYNIDILALAAEQGSICIHWVSIRNGRRVGEKSFFPDSRHSAPEEAAAYGEAFAAQHYLG 310 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 + P+ I+ + L+ + +++G +++ GE+R ++ A NA + QK Sbjct: 311 RDKPDIIISNFRLP--ENLQAALIEEHGKQIRFIAKTSGERRVWLQMAEQNALLALRQKQ 368 Query: 357 STEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 + + ++ + LP RIE +D SH G + V VV +QYR++ Sbjct: 369 QQNQNQEQRVQALAELLQLPTAELNRIECFDISHTQGEATVASCVVYENQSMRPDQYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ K DD A MR VL RR+ +L + E WPD+V++DGGKGQ Sbjct: 429 NIKTA--KAGDDYAAMREVLTRRYGKLAEGNEE-----------DGKWPDLVLIDGGKGQ 475 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQRLR 534 ++ AQ V + L + R+ ++ IAKGP+R AG+E+ G L P L+ +Q +R Sbjct: 476 VAMAQQVWQDLGI--RLPMVGIAKGPERKAGLEELIIPHLGTTTQLPPHHPALHLLQTVR 533 Query: 535 DEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE+HRFAIT HR++R KA S L EI G+G R+R LL FG ++ I +S + LA E Sbjct: 534 DESHRFAITGHRRKRGKARVTSSLAEIPGVGDKRRRSLLTRFGGLRGIQAASIDDLAQTE 593 Query: 594 GISKKIACKIYNHFH 608 GIS+ +A KIY H Sbjct: 594 GISRALAEKIYEALH 608 >gi|304397146|ref|ZP_07379025.1| excinuclease ABC, C subunit [Pantoea sp. aB] gi|304355295|gb|EFM19663.1| excinuclease ABC, C subunit [Pantoea sp. aB] Length = 610 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 213/616 (34%), Positives = 339/616 (55%), Gaps = 31/616 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY+M D +G V+YVGKA +L+KR+ SY + + ++S I +I TVT Sbjct: 13 TVTSKPGVYRMYDASGTVIYVGKAKDLKKRLTSYFRVQVGSRKTEALVSNIQHIDVTVTH 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLE N IK +PR+N+LLRDDKS+PYI ++ P L HR + +G YFGP Sbjct: 73 TETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLS-SDTHPRLAMHRGAKHAKGEYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEF 183 F + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y + Sbjct: 132 FPNGYAVRETLGLLQKVFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYAQQ 191 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NR 241 + FL+G + + ++ ++M +A++ +E A RD++ A+ I + Sbjct: 192 TDYVRLFLAGKDDQVLNQLVKHMEEASIGLRFEEAARLRDQIQAVRRITEKQFVSNQGDD 251 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----K 297 +D + + +AC+ F G+ G+ ++F K ++ A+++ F+ QFY + Sbjct: 252 LDVMGVAYEAGMACLHVLFIRQGKVLGSRSYFPKVPVDTDLAEVVQTFVGQFYLQGSEAR 311 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P +ILL E LL S + G +V I +G++ + ++ A NA + T +LS Sbjct: 312 TLPGDILLDFTLPERELLAESLSELAGRRVNIQSKPRGDRARYLKLARTNAATALTTRLS 371 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + L + L I R+E +D SH MG + VV +NG ++ YR++N+ Sbjct: 372 QHSTIHQRLNALAEFLELDKIT-RMECFDISHTMGEQTIASCVVFDQNGPLRADYRRYNI 430 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + DD A M VL RR+ + I+ ++ PDV+++DGGKGQLS Sbjct: 431 --TGITPGDDYAAMNQVLRRRYGKAIEEDK---------------IPDVILIDGGKGQLS 473 Query: 478 AAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRL 533 A V +L+V +N+ ++ +AKG R AG+E F + +GE + + P L+ IQ + Sbjct: 474 QAIQVFAELDVPWDKNQPILLGVAKGSDRKAGLETLFFEAEGEGVSMPPDAPALHVIQHI 533 Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RD+AH AI+ HRK+R K S L+ I G+GP R++ LL+ G ++ + +S E +A++ Sbjct: 534 RDDAHNHAISGHRKKRAKVKNTSALESIEGVGPKRRQQLLKYMGGLQPLMNASVEEIANV 593 Query: 593 EGISKKIACKIYNHFH 608 GIS +A KIY Sbjct: 594 PGISHALAEKIYYSLK 609 >gi|71082792|ref|YP_265511.1| excinuclease ABC subunit C [Candidatus Pelagibacter ubique HTCC1062] gi|91762785|ref|ZP_01264750.1| excinuclease ABC subunit C [Candidatus Pelagibacter ubique HTCC1002] gi|90110993|sp|Q4FPI1|UVRC_PELUB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|71061905|gb|AAZ20908.1| excinuclease ABC chain C [Candidatus Pelagibacter ubique HTCC1062] gi|91718587|gb|EAS85237.1| excinuclease ABC subunit C [Candidatus Pelagibacter ubique HTCC1002] Length = 611 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 255/608 (41%), Positives = 379/608 (62%), Gaps = 18/608 (2%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PGVY+MLD +LYVGKA NL R+KSY+ NH R M+SQ + T T Sbjct: 18 IPKSPGVYRMLDHKDVILYVGKAKNLPNRLKSYVAEKNHIIRTARMLSQTFKLEITTTAN 77 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLEAN+IK+ KP+FNILL+DDKSFP++ I++K + + KHR +G YFGPF Sbjct: 78 ESEALLLEANLIKKHKPKFNILLKDDKSFPFVFISNKDQWAQVTKHRGKKDKEGFYFGPF 137 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 AS TI LQ+ F +R C DS F++R RPC+L+QIKRCSGPC I E Y + V Sbjct: 138 ASAGTANWTIKMLQKIFQIRVCDDSTFKNRKRPCILYQIKRCSGPCVDYIDKEDYKKSVD 197 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNRM 242 +A +F+SG + ++++ +++ M +A+ K D+E A I RDR+ +L+ IQ+ ++ Sbjct: 198 QAIQFVSGKSRDIQKNLSKQMEEASEKLDFERASIFRDRIKSLNIIQSSQRINEANLIDA 257 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D + Y CIQ F+ QN G +F K D + + ++I+S FL QFY +K P+ Sbjct: 258 DVIAAYKESGKTCIQVFFYRSKQNWGNQAYFPKHDPDQSLSEIMSSFLMQFYENKNVPKL 317 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 I+++ E E+ L+E + K+ + I V K+G K K+I A NA S +K+ ++ Sbjct: 318 IIINTEIEDKKLIEETLSKKENSAISINVAKKGTKAKVIAMAEKNAKESLNRKIYETNNN 377 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 + + + KKF L + +E+YDNSHI G ++VG M+ G GFVK +YRKF++ Sbjct: 378 KNLFEGVAKKFDLKNGLNLVEVYDNSHISGTNSVGAMITFGNEGFVKKRYRKFDIKTK-G 436 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 QDD AM++ VL RRF + + + N + + PD++++DGGKGQ S+A+ V Sbjct: 437 NEQDDFAMLKEVLTRRFKRAMLEKGN-----------YLTLPDLILIDGGKGQYSSAKEV 485 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 L + + + + +I+IAKG R++G E FF KG++ + DP L+F+QRLRDEAHRFAI Sbjct: 486 LDEFGLHD-LPMIAIAKGKLRNSGDETFFY-KGKSFKFDKNDPTLFFMQRLRDEAHRFAI 543 Query: 543 TTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T+HR +R K S LD+I+GIG +RKR LL FG+ + + +S + + S+EG+ +K+A Sbjct: 544 TSHRAKRAKGITKSLLDQIDGIGSIRKRALLNHFGSARAVESASFDEIKSVEGVEEKVAK 603 Query: 602 KIYNHFHK 609 KIYN FH+ Sbjct: 604 KIYNFFHE 611 >gi|118617429|ref|YP_905761.1| excinuclease ABC subunit C [Mycobacterium ulcerans Agy99] gi|118569539|gb|ABL04290.1| excinuclease ABC (subunit c-nuclease) UvrC [Mycobacterium ulcerans Agy99] Length = 628 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 184/630 (29%), Positives = 295/630 (46%), Gaps = 35/630 (5%) Query: 13 YQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTCTEVEALL 71 Y+ D GRV+YVGKA +L+ R+ SY + R M++ + +TV TEVEAL Sbjct: 2 YRFRDPHGRVIYVGKAKSLRSRLTSYFADIAHLQPRTRQMVTTAAKVEWTVVNTEVEALQ 61 Query: 72 LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAV 131 LE N IK PRFN+ RDDKS+P + +T P L +R YFGP++ A+ Sbjct: 62 LEYNWIKEFDPRFNVRYRDDKSYPVLAVTLNEDFPRLMVYRGPRRKGVRYFGPYSHAWAI 121 Query: 132 EKTINSLQRTFFLRSCADSVFRHRT---RPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 +T++ L R F R+C+ VF+ RPCLL I +CS PC G +S E++ + V + Sbjct: 122 RETVDLLTRVFPARTCSMGVFKRHKQIDRPCLLGYIDKCSAPCIGRVSKEQHRQIVDDFC 181 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCF 245 FLSG ++ + MN A D+E A RD +AL + D Sbjct: 182 DFLSGKTDRYARELEQQMNAAAENLDFERAARLRDDRSALKRAMEKQAVVLGDGTDADVV 241 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST---NAQILSYFLRQFYTD------ 296 + ++ A +Q G+ RG + ++ S Q++ FL QFY D Sbjct: 242 AFADDELEAAVQVFHVRGGRVRGQRGWVVEKPSAPDVSVEEQLVEQFLAQFYGDQAELGG 301 Query: 297 ------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR 350 P P +L+ L G +V + VP++G+KR + E NA Sbjct: 302 AADESVNPVPREVLVPCLPSNADQLSSWLSGLRGSRVTLRVPRRGDKRALAETVQRNAKE 361 Query: 351 SHTQKLSTEISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 + Q L++ + L P RIE D SH+ G V +VV + Sbjct: 362 ALQQHKLKRAGDFNARSAALQNIQEALGLADAPLRIECVDISHVQGTDVVASLVVFEDGL 421 Query: 407 FVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLN-FHPKKQEYSFPSWP 464 K+ YR F + + + DD A + V RRF + + + + N P+ + F P Sbjct: 422 PRKSDYRHFAIREAAGQGRSDDVASIAEVTRRRFQRHLSEQNDPNLLSPEGKSRRFAYPP 481 Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524 ++ ++DGG Q++AA VL++L + + + +I +AK + E + + + +++ Sbjct: 482 NLYVVDGGAPQVNAASAVLEELGIVD-VAVIGLAKRLE-----EVWVPSEPDPIIMPRNS 535 Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583 LY +QR+RDEAHRFAIT HR +R K S LD + G+G R++ L+ FG++ + Sbjct: 536 EGLYLLQRVRDEAHRFAITYHRSKRSKRMTASALDAVPGLGEHRRKALVTHFGSIARLKE 595 Query: 584 SSPETLASIEGISKKIACKIYNHFHKNTSH 613 ++ + + ++ GI A + + Sbjct: 596 ATVDQITAVPGIGVATATAVLEALRPDQPG 625 >gi|238927176|ref|ZP_04658936.1| excision endonuclease subunit UvrC [Selenomonas flueggei ATCC 43531] gi|238884958|gb|EEQ48596.1| excision endonuclease subunit UvrC [Selenomonas flueggei ATCC 43531] Length = 609 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 201/619 (32%), Positives = 320/619 (51%), Gaps = 40/619 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 + +P+ PGVY M D G+++YVGKA L+ R++ Y S+ NHT ++ M+S I + Sbjct: 8 KLKLLPDSPGVYIMKDDHGKIIYVGKAIVLKNRVRQYFQSSRNHTPKVRAMVSHIADFET 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T EVE+L+LEAN+IK+ +PR+NI L+DDKS+PY+ +T + + P ++ R Sbjct: 68 IMTANEVESLILEANLIKKHRPRYNIRLKDDKSYPYVKVTVQEEFPRVFITRRVLRDGAR 127 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGP+ +V A+ ++ L+R F LR+C RPCL + IKRC PC G++ E Y Sbjct: 128 YFGPYTNVTALRDSLKLLRRLFPLRTCRTMP----QRPCLEYHIKRCLAPCVGKVGEEDY 183 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + A FL G +++ ++ + M+ A +E+A RD+L+A+ + + Sbjct: 184 RAMIRAALLFLEGRTDDVEGELEQRMHAAAEAYHFETAARLRDQLSAVRTAAERQNIVTG 243 Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D + + C+Q F G+ G F L+ E TNA IL FL Q+Y Sbjct: 244 AGDQDAIGMARSAAGVCVQIFFIRGGKMIGREHFLLRGSEEETNADILRAFLEQYYNQAT 303 Query: 299 -CPENILLSEEAEETS---LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350 P +LL ++ ++T+ + ++ G KV + P++G K I++ A NA Sbjct: 304 FVPREVLLPQDIDDTARATIESWLAARKGGGKVALLSPQRGTKHDIVQMATGNAEKFLSD 363 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 T++ + +++ + L H P+R+E +D SH G V MVV + K+ Sbjct: 364 EETRRSLMDEQTLGAVEELGRYLGLKHPPRRMECFDISHNQGQETVASMVVFEDGAPKKS 423 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YR+F + + DD MR V RR+ L + + PD++I+D Sbjct: 424 DYRRFKIRSTEG-KPDDFLSMREVTTRRYVGLAEEK----------------LPDLIIID 466 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYF 529 GGKGQLS+A +++ + ++ +AK E F + + L R LY Sbjct: 467 GGKGQLSSALEIIRHAAGHKDVPVVGLAKQ------FELVFTEGNPDPVELPRRSQALYL 520 Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 IQR+RDEAHRFAIT HRK R K+ S LD I GIGP R++ L FG+++ I +S E Sbjct: 521 IQRIRDEAHRFAITFHRKLRGKRNLVSVLDHIVGIGPKRRQSLRTHFGSLEKIKEASVEE 580 Query: 589 LASIEGISKKIACKIYNHF 607 LA+ G+++ A + + F Sbjct: 581 LAAAPGMNRTSAEAVRHFF 599 >gi|194365181|ref|YP_002027791.1| excinuclease ABC subunit C [Stenotrophomonas maltophilia R551-3] gi|229557866|sp|B4SQQ3|UVRC_STRM5 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|194347985|gb|ACF51108.1| excinuclease ABC, C subunit [Stenotrophomonas maltophilia R551-3] Length = 614 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 222/607 (36%), Positives = 332/607 (54%), Gaps = 21/607 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+ PGVY+M +LYVGKA L+ R+ SY + + RI MISQI + TVT Sbjct: 17 QLSTAPGVYRMYAADDTLLYVGKARALRNRVGSYFNGSPKNARIMSMISQITRMDVTVTR 76 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE +IK L PR+N+ LRDDK++P++L+T + P + HR I G YFGP Sbjct: 77 SEAEALLLENQLIKSLSPRYNVSLRDDKTYPHVLLT-REDWPRIALHRGPRAIPGRYFGP 135 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + V AV +T+N + + F LRSC DSVFR+R+RPCL +QI RCS PC + + +Y E V Sbjct: 136 YPGVTAVRETLNLMHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSAPCVELVPAPEYAESV 195 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242 A FL G + L ++ M A+ ++E A RD +++L +Q + Sbjct: 196 RRAALFLEGKSDELTRELGEQMQAASEALEFEQAARLRDLISSLRSMQTRQYVDGRAADL 255 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D ++ + AC+ F G+N GT FF +T+ E + ++L+ F+ Q+Y + P Sbjct: 256 DVLAVAMQGSQACVLLLAFRDGRNLGTRPFFPRTNGEESPEEVLAAFVSQYYIEFEPPRE 315 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 ILL E + LL + KV++ +GE+ +E A NA + +L++ + Sbjct: 316 ILLDREIPDADLLVAALSASAERKVQLKWNVRGERAGYVELASRNAQLTLATELNSRNAQ 375 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 L KR+E +D SH +G + V VV G V+ QYR+FN+ + + Sbjct: 376 HARSDALRDMLGLAEPVKRVECFDISHTLGEATVASCVVFDAAGPVRAQYRRFNI--SGI 433 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 + DD A MR ++RRF + ++ + PDV+++DGG GQL+ AQ Sbjct: 434 EPGDDYAAMRQAIDRRFRRAVEEQ--------------GVLPDVLLIDGGAGQLAQAQAA 479 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 L L VE + ++ +AKG +R AG E + G L +P L FIQ++RDEAHRFAI Sbjct: 480 LADLGVEG-VLLVGVAKGVERRAGHEALVMPDGRELRPGAANPALQFIQQVRDEAHRFAI 538 Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR+KA S L++I GIGP R+ LL+ FG + + + +A +EGI+ +A Sbjct: 539 TGHRGRRQKARMTSKLEDIPGIGPRRRASLLKHFGGLVGLKAAGEAEIAKVEGINDALAA 598 Query: 602 KIYNHFH 608 +IY + H Sbjct: 599 RIYANLH 605 >gi|127512753|ref|YP_001093950.1| excinuclease ABC subunit C [Shewanella loihica PV-4] gi|189038092|sp|A3QDZ3|UVRC_SHELP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|126638048|gb|ABO23691.1| Excinuclease ABC subunit C [Shewanella loihica PV-4] Length = 609 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 200/616 (32%), Positives = 324/616 (52%), Gaps = 28/616 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + GVY+M D G V+YVGKA +L+KR+ SY N + ++S I NI T+ Sbjct: 11 LKTVSSSAGVYRMYDAQGVVIYVGKAKDLKKRLSSYFRRNLPNVKTQALVSHIANIDVTL 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E +AL+LE + IK+ PR+N+LLRDDKS+PYI ++ H+ P L HR +G YF Sbjct: 71 TPSETDALILENDYIKQYMPRYNVLLRDDKSYPYIFLS-GHRHPRLAYHRGPQREKGHYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + AV ++++ +Q+ F +R C D ++ R+RPCL +QI RCS PC G+IS E Y E Sbjct: 130 GPYPNGGAVRESLHLMQKLFPIRQCDDLYYKARSRPCLQYQIARCSAPCVGKISDEDYAE 189 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240 V A FL G + + + M QA + +YE A +RD+++AL + + + Sbjct: 190 QVKLASLFLRGKDQQVIATLVGKMEQAAMDLNYEDAARYRDQISALRRVAEQQEVSSDSG 249 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD---- 296 MD Y+ +AC F G+ G+ +++ E+ +++L F+ QFY + Sbjct: 250 DMDVIGAYYASGIACFHLLFIRNGKIFGSRSYYPSVPDETEVSEVLRAFMLQFYLNVDSQ 309 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 + P I++S E E+ LE + + ++ I + E+ + A NA + +L Sbjct: 310 RTLPREIVVSHEFEDIHELEEAIAQASNRRLLIKTKVRSERASFLRIADANAKNAVETRL 369 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 S + + + + R+E +D SH MG S V VV G K +YR++N Sbjct: 370 SHQNTVEERFLLLEEALEQSQAINRMECFDISHTMGESTVASCVVFNREGPSKGEYRRYN 429 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + + DD A M+ + RRF ++ + + PD++ +DGG GQL Sbjct: 430 I--SGITPGDDYAAMKQAIGRRFDKIEADGK---------------IPDILFIDGGMGQL 472 Query: 477 SAAQGVLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRL 533 AQ V+ + +++ T+I +AKG R G+E + E L L+ IQ + Sbjct: 473 RIAQKVVNEKFAHLDVAPTLIGVAKGEGRKPGLETLIYGENEVAFSLPADSGALHLIQHI 532 Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDE+HRFAIT HR +R+K S L+ I G+GP R++ LLQ G ++ + +S L+ + Sbjct: 533 RDESHRFAITGHRNKRQKTRNTSTLESIPGVGPKRRKALLQYLGGLQQVKGASVAQLSKV 592 Query: 593 EGISKKIACKIYNHFH 608 GIS ++A I++ Sbjct: 593 PGISLEMAQTIHDALR 608 >gi|120403681|ref|YP_953510.1| excinuclease ABC subunit C [Mycobacterium vanbaalenii PYR-1] gi|189038072|sp|A1T8K4|UVRC_MYCVP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|119956499|gb|ABM13504.1| Excinuclease ABC subunit C [Mycobacterium vanbaalenii PYR-1] Length = 678 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 193/661 (29%), Positives = 309/661 (46%), Gaps = 55/661 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA +L+ R+ SY + R M+ ++ +TV Sbjct: 13 SIPVEPGVYRFRDPHGRVIYVGKAKSLRSRLNSYFADLSGLAPRTRQMVMTAASVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE N IK PRFNI RDDKS+P + +T + P L +R YFG Sbjct: 73 STEVEALQLEYNWIKEFDPRFNIRYRDDKSYPVLAVTLNEEYPRLKVYRGPRRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F R+C++ VF+ RPCLL I +C+ PC G +S+E++ Sbjct: 133 PYSHAWAIRETLDLLTRVFPARTCSNGVFKRHSQIDRPCLLGYIDKCAAPCVGRVSAEEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 V + FL+G L ++ + MN A + D+E A RD + A+ + Sbjct: 193 RRIVLDFCDFLAGKTDRLIREMEQQMNAAAEELDFERAARLRDNIGAMRRAMEKQTVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT---DSESTNAQILSYFLRQFY 294 D + ++ A +Q G+ RG + ++ EST A ++ FL QFY Sbjct: 253 DGTDADVVAFADDELEAAVQVFHVRGGRVRGQRGWVIEKSGEPGESTPAYLVEQFLTQFY 312 Query: 295 TD------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIE 342 D P P +L+ + T LE + G +V + VP++G+KR + E Sbjct: 313 GDQAELGGAADEATNPVPRQVLVPVLPDTTEELETWLSQLRGSRVSLRVPQRGDKRALAE 372 Query: 343 QALINAHRSHTQKLSTEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGC 398 NA ++ TQ L+ + L P RIE D SH+ G V Sbjct: 373 TVKRNAEQALTQHKLKRAGDFTARSAALQSIQEALGLADAPLRIECVDISHVQGTDVVAS 432 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLNFH----- 452 +VV + K+ YR F + + DD A + V RRF + +++ E Sbjct: 433 LVVFEDGLPRKSDYRHFAIREAAGDGRSDDVASIAEVTRRRFHRHLRDAEAAPEGRPEQG 492 Query: 453 ------------PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500 + F P++ ++DGG Q++AA VL +L + + + +I +AK Sbjct: 493 PRASARPEQGPRASARPARFAYPPNLFVVDGGAPQVNAAAAVLDELGISD-VAVIGLAKR 551 Query: 501 PKRSAGMEKFFVK----KGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYS 555 + E + + ++ LY +QR+RDEAHRFAI+ HR +R K S Sbjct: 552 LE-----EVWVPNLDGTAPDPVIFPRNSDGLYLLQRVRDEAHRFAISYHRSKRSKRMTAS 606 Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615 LD + G+G R++ L+ FG++ + ++S + + ++ GI A + ++ P Sbjct: 607 ALDSVRGLGEHRRKALVTHFGSLARLKQASVDEITAVPGIGAATARAVLEALGADSGAAP 666 Query: 616 T 616 T Sbjct: 667 T 667 >gi|94311346|ref|YP_584556.1| excinuclease ABC subunit C [Cupriavidus metallidurans CH34] gi|119367820|sp|Q1LKN9|UVRC_RALME RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|93355198|gb|ABF09287.1| excinuclease UvrABC, endonuclease subunit C [Cupriavidus metallidurans CH34] Length = 673 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 216/643 (33%), Positives = 332/643 (51%), Gaps = 44/643 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +MP PGVY+ D G +LYVGKA +L+KR+ SY + + RI M+++I I TV Sbjct: 36 RMPGLPGVYRYFDADGNILYVGKARDLKKRVSSYFNKTQLSPRIAMMVAKIARIDTTVVR 95 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLE N+IK L PR+NIL RDDKS+P++ +T HK P + +R ++ + YFGP Sbjct: 96 TEAEALLLENNLIKALAPRYNILFRDDKSYPFLRLT-GHKFPRMAYYRGATDRKHQYFGP 154 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV +++ LQ+ F LR+C D+VF +RTRPCLL QI RC+GPC G IS + Y V Sbjct: 155 FPSAHAVRESMQILQKVFQLRTCEDTVFNNRTRPCLLHQIHRCTGPCVGAISEDDYARDV 214 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS----IYN 240 A +FL G + E + M ++ ++E A RD++AALS + Sbjct: 215 SNAARFLQGRETEVLEGLQSKMEAHAVQLEFEQAAAVRDQIAALSTVLKRQAVEEVGQAR 274 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE-----STNAQ----------- 284 +D ++ AC+ G++ G +F E + Sbjct: 275 DIDILAVAVQGGRACVNLAMVRGGRHLGDKAYFPAHVDEAAMIVEEGDEADGSAHEGAAA 334 Query: 285 -------------ILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITV 331 +LS F+ Q Y D+ P +++S +++L+E Q G K+ + Sbjct: 335 DTDQLPIDRIAARVLSAFMVQHYLDQAPPPIVVVSHRPADSALVEA-LSMQAGRKITLVR 393 Query: 332 PKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP---KRIEIYDNS 388 QG+++ +E A A + ++L+ + S + + + L RIE +D S Sbjct: 394 QPQGQRKTWLEMAAQGAGLALARRLAEQGSQEARTRALAETIGLDLEDLATLRIECFDIS 453 Query: 389 HIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EE 447 H G + VV + ++YR++N+ + DD A MR VL RR+ +L++ +E Sbjct: 454 HTAGEATQASCVVFHHHEMQNSEYRRYNIAD--ITPGDDYAAMRQVLTRRYQKLVEQLQE 511 Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507 P P VV++DGGKGQ+ A+ V ++L ++ + ++ +AKG R G+ Sbjct: 512 AGGDPAGDGGDGVPRMPRVVLIDGGKGQVEVARQVFEELGLDIGL-LVGVAKGEGRKVGL 570 Query: 508 EKFFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGP 565 E G L L L + ++RDEAHRFAIT R RR KA S L+EI G+G Sbjct: 571 ETLVFADGRPSLELGQGSAALMLVAQIRDEAHRFAITGMRARRAKARTTSRLEEIEGVGA 630 Query: 566 LRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 R++ LL FG ++ + +S + LAS+EGIS+ +A +IY H Sbjct: 631 RRRQKLLTRFGGLRGVMAASIDELASVEGISRTLAEEIYRQLH 673 >gi|190573635|ref|YP_001971480.1| excinuclease ABC subunit C [Stenotrophomonas maltophilia K279a] gi|229557867|sp|B2FK26|UVRC_STRMK RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|190011557|emb|CAQ45176.1| putative excinuclease ABC subunit C [Stenotrophomonas maltophilia K279a] Length = 614 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 222/607 (36%), Positives = 333/607 (54%), Gaps = 21/607 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+ PGVY+M +LYVGKA L+ R+ SY + + RI MISQI + TVT Sbjct: 17 QLSTAPGVYRMYAADDTLLYVGKARALRNRVGSYFNGSPKNARIMSMISQIVRMDVTVTR 76 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE +IK L PR+N+ LRDDK++P++L+T + P + HR I G YFGP Sbjct: 77 SEAEALLLENQLIKSLSPRYNVSLRDDKTYPHVLLT-REDWPRIALHRGPRAIPGRYFGP 135 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + V AV +T+N + + F LRSC DSVFR+R+RPCL +QI RCS PC ++ +Y E V Sbjct: 136 YPGVTAVRETLNLMHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSAPCVELVAPAEYAESV 195 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242 A FL G + L ++ M A+ ++E A RD +++L +Q + Sbjct: 196 RRAALFLEGKSDELTRELGEQMQAASEALEFEQAARLRDLISSLRSMQTRQYVDGRAADL 255 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D ++ + AC+ F G+N GT FF +T+ E + ++L+ F+ Q+Y + P Sbjct: 256 DVLAVAMQGSQACVLLLAFRDGRNLGTRPFFPRTNGEESPEEVLAAFVSQYYIEFEPPRE 315 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 ILL E + LL + KV++ +GE+ +E A NA + +L++ + Sbjct: 316 ILLDREIPDADLLVAALSASAERKVQLKWNVRGERAGYVELASRNAQLTLATELNSRNAQ 375 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 + L KR+E +D SH +G + V VV G V+ QYR+FN+ + + Sbjct: 376 HARSDALREMLGLAEPVKRVECFDISHTLGEATVASCVVFDAAGPVRAQYRRFNI--SGI 433 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 + DD A MR ++RRF + ++ + PDV+++DGG GQL+ AQ Sbjct: 434 EPGDDYAAMRQAIDRRFRRAVEEQ--------------GVLPDVLLIDGGAGQLAQAQAA 479 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 L L VE + ++ +AKG +R AG E + G L +P L FIQ++RDEAHRFAI Sbjct: 480 LADLGVEG-VLLVGVAKGVERRAGHEALVMPDGRELRPGAANPALQFIQQVRDEAHRFAI 538 Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR+KA S L++I GIGP R+ LL+ FG + + + +A +EGI+ +A Sbjct: 539 TGHRGRRQKARMTSKLEDIPGIGPRRRASLLKHFGGLVGLKAAGEAEIAKVEGINDALAA 598 Query: 602 KIYNHFH 608 +IY + H Sbjct: 599 RIYANLH 605 >gi|315126224|ref|YP_004068227.1| excinuclease ABC subunit C [Pseudoalteromonas sp. SM9913] gi|315014738|gb|ADT68076.1| excinuclease ABC subunit C [Pseudoalteromonas sp. SM9913] Length = 607 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 217/614 (35%), Positives = 332/614 (54%), Gaps = 27/614 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+MLD +V+YVGKA +L+KR+ SY SN + ++S I NI T+ Sbjct: 10 LKTLSSEPGVYRMLDNDNQVIYVGKAKSLKKRVSSYFRSNITDSKTRVLVSNICNIEVTL 69 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N+IK+ +PR+NILLRDDKS+PYIL+T+ HK P L HR S ++G YF Sbjct: 70 TNTETEALLLENNLIKKYQPRYNILLRDDKSYPYILLTN-HKHPRLAFHRGSRKVKGEYF 128 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF S AV +++ +Q+ F +R C D+ +R R+RPCL +Q+KRCS PC ++S ++Y + Sbjct: 129 GPFPSAGAVSESLRLMQKIFPVRQCEDAYYRARSRPCLQYQLKRCSAPCVNKVSEDEYAQ 188 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240 V +KFL+G +H + + M +A+ + ++E A RD++ L +Q N Sbjct: 189 QVDYVRKFLTGKSHEVIADLIAKMEKASEQLNFELAAKVRDQIMLLRKMQEQQSISGNFA 248 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296 MD H L I + G+ T+F K +S +IL+ FL Q+Y Sbjct: 249 EMDVVGFAHLNGLNGIHLLMIRDHKVLGSKTYFPKVPKDSQEQEILTSFLGQYYLAPGAT 308 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 + I+L E EE+ L + + KV + V +GE+ + ++ A NA S T K Sbjct: 309 GRIAKEIILPFEIEESDALSEALTQISERKVSLKVVTRGERAQYLQLANKNALNSITVKQ 368 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 ST+ S L R+E +D SH MG + V VV G +YR++N Sbjct: 369 STQDSINKRYAQLKATLRLD-DINRMECFDISHTMGENTVASCVVFDSQGPNNKEYRRYN 427 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + DD A M L +R+++L+ ++ PDV+ +DGGKGQL Sbjct: 428 V--TGITGGDDYAAMEFALNKRYNKLVDEDK---------------IPDVIFIDGGKGQL 470 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRLRD 535 A+ + ++ +AKG R G+E + G + ++ P L+ IQ +RD Sbjct: 471 GRAEQYFENWPHAKMPLLVGVAKGTSRKPGLETLLIDGGRKTIPMDSDAPALHLIQHIRD 530 Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E+HRFAI HR +R+K S L+EI+G+G R++ LL+ G ++ + ++ E L + G Sbjct: 531 ESHRFAIAGHRNKRQKQRTQSLLEEIDGVGSKRRQTLLKYLGGMQGVKAANIEQLKKVPG 590 Query: 595 ISKKIACKIYNHFH 608 IS +A KI+NH H Sbjct: 591 ISPDMAEKIFNHLH 604 >gi|256379213|ref|YP_003102873.1| excinuclease ABC, C subunit [Actinosynnema mirum DSM 43827] gi|255923516|gb|ACU39027.1| excinuclease ABC, C subunit [Actinosynnema mirum DSM 43827] Length = 649 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 191/637 (29%), Positives = 302/637 (47%), Gaps = 39/637 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 ++ +PE PGVY+ D GRV+YVGKA NL+ R+ SY + R M++ ++ + Sbjct: 10 AAGSIPEAPGVYKFRDPTGRVVYVGKAKNLRSRLNSYFADLSGLHPRTRQMVTTAASVEW 69 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TEVEAL LE N IK PRFN+ +DDKS+P + +T +IP L+ +R Sbjct: 70 TVVGTEVEALQLEYNWIKEFDPRFNVRYKDDKSYPMLAVTLNEEIPRLHVYRGPQRRGVR 129 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP+ A+ +T++ L R F R+C VF+ RPCLL I +CS PC G +S Sbjct: 130 YFGPYPHAWALRETLDMLLRVFPARTCTGGVFKRHEQMGRPCLLGYIDKCSAPCVGRVSP 189 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 +++ V E F +G + ++ R MN A + ++E A RD L+AL Sbjct: 190 DEHRAIVGEFCDFFAGRTDGMVRRLEREMNAAAEELEFERAARLRDDLSALRRAVEKQAV 249 Query: 238 IYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D + + +Q G+ RG + + ++ ++ FL QFY Sbjct: 250 VLGDGTDADVVAFATDDLEVSVQVFHVRGGRVRGQRAWVVDRENSEGVPALVDRFLTQFY 309 Query: 295 ------------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIE 342 P P +L+ E ++ LE G KV + VP++G+KR ++ Sbjct: 310 GGQAEAAGAAAEDAAPVPREVLVPELPDDAPALERWLGGLRGTKVGLRVPQRGDKRDLMA 369 Query: 343 QALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGC 398 NA Q + L++ LP P RIE D SH G V Sbjct: 370 TVERNAKEELQQHKLRRAGDLTARSAALQELQDALDLPSAPLRIECVDISHTQGTDVVAS 429 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-------EENLNF 451 +VV + K++YR+F L + D A + V+ RRF +K + Sbjct: 430 LVVFEDGLPRKSEYRRFALREAATEG--DVASIAEVVRRRFQAYLKETAEAGDDAKPGID 487 Query: 452 HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF 511 + F P+++++DG Q +AA GVL +L +EN + ++ +AK + E + Sbjct: 488 PETGKPRRFAYAPNLLVVDGAGPQATAAAGVLAELGIEN-VAVVGLAKRLE-----EVWL 541 Query: 512 VKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRL 570 + +L LY +Q LRDEAHRFAI HR++R K S LD++ G+G RK Sbjct: 542 PDDPDPTILPRTSTALYLLQHLRDEAHRFAIAYHRQKRSKRMTASELDDVPGLGQTRKAA 601 Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 LL+ FG+++ + +S E ++ + G+ ++ A + Sbjct: 602 LLKHFGSLRKLREASIEEISGVPGVGRRTAEAVRARL 638 >gi|238917912|ref|YP_002931429.1| excinuclease ABC subunit C [Eubacterium eligens ATCC 27750] gi|259710340|sp|C4Z4U3|UVRC_EUBE2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|238873272|gb|ACR72982.1| excinuclease ABC subunit C [Eubacterium eligens ATCC 27750] Length = 612 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 200/619 (32%), Positives = 317/619 (51%), Gaps = 25/619 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M D ++Y+GKA L+ R++ Y SN N + +I M+S I + Sbjct: 7 ELKKLPAKPGVYIMHDKWDNIIYIGKAKVLKNRVRQYFQSNRNKSAKIVQMVSHIQYFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE N+IK +P++N +L+DDKS+P+I IT + P + R G Sbjct: 67 IITDSELEALVLECNLIKEHRPKYNTMLKDDKSYPFIKITVGEEYPRVLFARKMKHGAGK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV+ TI L + + +R+C ++ + R RPCL + I +C PC G +S E Sbjct: 127 YFGPYTSAAAVKDTIELLCKLYKVRTCNRNLPKDEGRDRPCLNYHIGQCDAPCQGYVSGE 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 +Y + E FL+G + +++ M +A+ K +YE A +RD L ++ + Sbjct: 187 EYRRRIDEVVAFLNGDYKKIMDRLTTQMQEASEKMEYEEAARYRDLLMSVKQVAQKQKIT 246 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 N D + + A +Q F G+ G F +K + + I+S F++Q+Y Sbjct: 247 ADDVNDRDVIACASDGQDAVVQVFFIRQGKLLGRDHFHMKVAEGDSKSDIISEFMKQYYG 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350 P P I++ E E+ + + KV I PK+G+K K++E A NA + Sbjct: 307 GTPFIPNIIMVQYEIEDADTIAQWLSARKSRKVSIVTPKKGDKEKMVELAYKNAQLVLTQ 366 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E +K+ L R E YD S+ G +VG MVV + KN Sbjct: 367 DAEKIKREESRTTGAMKEIAGWLGL-GTLHRAEAYDISNTNGVESVGSMVVFEDGKPKKN 425 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YRKF + VK DD MR VL RRF++ ++ E L + F +PD++++D Sbjct: 426 DYRKFRIRT--VKGPDDYKSMREVLTRRFTRGMREREGLE-----DSHGFSRYPDLIMMD 478 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GG+GQ++ A VLK+L + I + + K S + ++ I Sbjct: 479 GGRGQVNIALDVLKELGL--NIPVCGMVKDDTHSTRG---LYYNNIEIPIDKHSEGFKLI 533 Query: 531 QRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DEAHRFAIT HR R KA S LD I GIGP+R++ L++ F ++ I ++S + L Sbjct: 534 TRVQDEAHRFAITYHRSLRDKAQVSSVLDSIEGIGPVRRKALMKHFLDIEKIRQASVDEL 593 Query: 590 ASIEGISKKIACKIYNHFH 608 +GI++ +A IY FH Sbjct: 594 MKADGITENVAENIYKFFH 612 >gi|299067039|emb|CBJ38234.1| UvrABC system protein C (Excinuclease ABC subunit C) [Ralstonia solanacearum CMR15] Length = 669 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 211/641 (32%), Positives = 321/641 (50%), Gaps = 52/641 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P PGVY+ D G VLYVGKA +L+KR+ SY + RI M+++I +I TV Sbjct: 44 RLPNLPGVYRYFDAQGSVLYVGKARDLKKRVSSYFTKTLLSPRIAMMVAKIAHIETTVVR 103 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T +H P + +R ++ + YFGP Sbjct: 104 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-QHAYPRMAYYRGATDRKHQYFGP 162 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV +++ LQ+ F LR+C D+VF +RTRPCLL QI RC+ PC IS E Y V Sbjct: 163 FPSAHAVRESMQILQKVFQLRTCEDTVFNNRTRPCLLHQIHRCTAPCVQAISPEDYARDV 222 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS----IYN 240 A FL G + + + M + + ++E A RD++ ALS + + Sbjct: 223 ANAAGFLLGRQDEVMQTLQDKMQRHAVALEFEQAAAVRDQIGALSTVLTRQSVEEVGQAS 282 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT------------------------ 276 +D ++ AC+ G++ G +F Sbjct: 283 DIDILAVAIKGGHACVNLAMVRGGRHLGDKAYFPTHVEEGAAIVGVDVEADVPEGVETQP 342 Query: 277 ----DSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVP 332 D E IL F+ Q Y D+ P +++S L+E + G +V + Sbjct: 343 ELERDPERMARDILEAFVAQHYLDQFVPPVLVVSHPIRAAGLIEALAAQA-GRRVSVVRQ 401 Query: 333 KQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP---KRIEIYDNSH 389 QG +R +E A A S ++LS + S + + + R+E +D SH Sbjct: 402 PQGARRAWLEMAEKGAELSLARRLSEQGSQHARTRALAEIIGIDLEDLAALRVECFDISH 461 Query: 390 IMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL 449 G + VV + +YR++N+H + DD A MR VL RR+ ++++ Sbjct: 462 TAGEATQASCVVFHSHAMQNGEYRRYNIHD--IIPGDDYAAMRQVLTRRYQKVVEQAAE- 518 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 P P VV++DGGKGQ+ A+ V ++L ++ + ++ +AKG R G+E Sbjct: 519 ---------DAPDMPRVVLIDGGKGQVEVARQVFEELGLDIGL-LVGVAKGEGRKVGLET 568 Query: 510 FFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567 G L L L + ++RDEAHRFAIT R +R KA S L+EI GIG R Sbjct: 569 LVFADGRPSLELGQGSAALMLVAQIRDEAHRFAITGMRAKRAKARNTSRLEEIEGIGAKR 628 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LL FG ++ + +S + LA++EGIS+ +A +IY H Sbjct: 629 RQRLLARFGGLRGVMSASVDELATVEGISQTLAEEIYRQLH 669 >gi|225377816|ref|ZP_03755037.1| hypothetical protein ROSEINA2194_03467 [Roseburia inulinivorans DSM 16841] gi|225210327|gb|EEG92681.1| hypothetical protein ROSEINA2194_03467 [Roseburia inulinivorans DSM 16841] Length = 623 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 199/623 (31%), Positives = 328/623 (52%), Gaps = 21/623 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRF 60 +++P+ PGVY M D ++Y+GKA +L+KR+ Y +++ + M+ QI + Sbjct: 7 ELKKLPDQPGVYIMHDSRDAIIYIGKAVSLRKRVHQYFQASHDEGIKKAQMVKQIARFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE N+IK +P++N +LRDDK++PYI +T P + R + Sbjct: 67 IITDSELEALVLECNLIKEHRPKYNTMLRDDKTYPYIRVTVGEDFPRVLFSRQQKKDRSR 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV+ TI + + + LR+C ++ + + RPCL + I +C+ PC G IS E Sbjct: 127 YFGPYTSAGAVKDTIELINKLYQLRTCNRNLPKDIGKDRPCLNYHIHQCNAPCQGYISKE 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + V A +FL+G + + + M A+ + +E AI +RD L ++ I Sbjct: 187 EYRQRVDAAVEFLNGNYAPILKSLQEKMMAASEEMQFEKAIEYRDLLNSVKQIAQKQKIT 246 Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 +N D +L + A +Q F G+ G F++K +E T QIL+ F++QFY+ Sbjct: 247 HNDGEDKDIIALAADDRDAVVQVFFIRDGKLIGRDHFYVKIGNEDTKEQILTTFVKQFYS 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350 P P I+L EE ++ +L ++ G KV I +P++G K K++E A NA + Sbjct: 307 GTPFIPREIMLPEEIDDHEVLAEWLGEKRGGKVYIRIPQKGMKEKLVELAQKNAELVLSQ 366 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E +K+ LP +R+E +D S+I G VG MVV + ++ Sbjct: 367 DKEKIKREEGRTIGAMKEIAGWLDLP-GLQRVEAFDISNINGFETVGSMVVYEKGKPKRS 425 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE-YSFPSWPDVVIL 469 YRKF L V DD A M VL RRF+ ++ +E + E SF +PD++++ Sbjct: 426 DYRKFKLRT--VTGPDDYASMHEVLTRRFTHGMREQEEMQEKELGAEYGSFTRFPDLIMM 483 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGG+GQ++ VL +L++ I + + K + ++ Sbjct: 484 DGGRGQVNICLKVLDELHL--NIPVCGMVKDDNHRTRG---LYYNNIEIPIDRGSEGFKL 538 Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 I R++DEAHRFAI HR R K +S LD+I GIGP R++ L++ + +++ I +S E Sbjct: 539 ITRIQDEAHRFAIEYHRSLRSKEQVHSILDDIPGIGPSRRKALMKKYQSLEAIREASAED 598 Query: 589 LASIEGISKKIACKIYNHFHKNT 611 LA E +++K A +Y HK+ Sbjct: 599 LADTESMNEKAAQAVYEFLHKDA 621 >gi|239917632|ref|YP_002957190.1| Excinuclease ABC subunit C [Micrococcus luteus NCTC 2665] gi|281413877|ref|ZP_06245619.1| excinuclease ABC subunit C [Micrococcus luteus NCTC 2665] gi|239838839|gb|ACS30636.1| Excinuclease ABC subunit C [Micrococcus luteus NCTC 2665] Length = 643 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 194/634 (30%), Positives = 313/634 (49%), Gaps = 34/634 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTVT 63 ++ PGVY+ D GRV+YVGKA NL+ R+ SY + M+ + +TV Sbjct: 15 EISTSPGVYRFRDADGRVVYVGKAKNLRARLSSYFQDPARLATKTRTMVFTAAAVEWTVV 74 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E+EAL LE IK +PRFNI+ RDDKS+PY+ +T + P + R YFG Sbjct: 75 GSELEALQLEYTWIKEYRPRFNIMYRDDKSYPYLAVTMNEQFPRVQVMRGDRKPGVKYFG 134 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180 PF A+ +T++ + R F +R+C+ VF+ + RPCLL I +CS PC G IS + Sbjct: 135 PFHPAKAIRETVDLMLRVFPVRTCSAGVFKRARAQDRPCLLGYIGKCSAPCVGRISPADH 194 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + F++G + ++ + M +A + YE A RD +AAL + N + Sbjct: 195 RALAQDFCDFMAGDANRFIRELEKAMARAVEELRYEDAARLRDDIAALRRVFERNAVVLP 254 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D F+L+ ++ +Q G+ RG + ++ + +++++ L+Q Y D Sbjct: 255 ENTEADIFALHADELEVAVQVFHVRQGRIRGQRGWVMERVEDVAEPEMVAHLLQQVYGDL 314 Query: 298 P----CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 P IL+ E ++ + L G +V + VP++G K ++E NA + Sbjct: 315 EGPERIPHEILVPVEPDDAAQLTEWLSGLRGSRVAVRVPRRGSKADLMETVRENAEMALK 374 Query: 354 QKLSTE----ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 S + L++ + + RIE YD SH G + VG MVV+ + K Sbjct: 375 LHKSRRSGDLTTRSAALRELQEALEITEPLLRIECYDISHSQGTNVVGSMVVMEDGLPKK 434 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEEN-------LNFHPKKQEYSFPS 462 YR+FN+ +DD A +R VL RRF++L K + ++ F Sbjct: 435 KDYRRFNVTGE--AARDDTASLRDVLRRRFARLAKERAEGAPLSGQVEGDDQEAGRRFSY 492 Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522 P +V++DGG Q++AA VL++L +++ + ++ +AK + E + +VL Sbjct: 493 PPSLVVVDGGPPQVAAAAAVLEELGLDD-LPVVGLAKRLE-----EVWLPGDEFPVVLPR 546 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMI 581 LY +QR+RDE+HRFAI HR RR KA S LD I G+GP ++ LL FG+V I Sbjct: 547 TSEGLYLLQRIRDESHRFAIAGHRSRRSKAMTVSALDGIPGLGPAKRTALLNHFGSVAEI 606 Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615 + + L + GI ++A ++ T+ TP Sbjct: 607 RAAGVDRLTEVAGIGPRLAEAVHTAL---TTDTP 637 >gi|308186332|ref|YP_003930463.1| UvrABC system protein C [Pantoea vagans C9-1] gi|308056842|gb|ADO09014.1| UvrABC system protein C [Pantoea vagans C9-1] Length = 610 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 214/616 (34%), Positives = 338/616 (54%), Gaps = 31/616 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY+M D +G V+YVGKA +L+KR+ SY + + + ++S I +I TVT Sbjct: 13 TVTSKPGVYRMYDASGTVIYVGKAKDLKKRLTSYFRTQVGSRKTEALVSNIQHIDVTVTH 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLE N IK +PR+N+LLRDDKS+PYI ++ P L HR + +G YFGP Sbjct: 73 TETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLS-SDTHPRLAMHRGAKHAKGEYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEF 183 F + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y + Sbjct: 132 FPNGYAVRETLGLLQKVFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYAQQ 191 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NR 241 + FL+G + + ++ + M +A++ +E A RD++ A+ I + Sbjct: 192 TDYVRLFLAGKDDQVLNQLVKRMEEASIGLRFEEAARLRDQIQAVRRITEKQFVSNQGDD 251 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----K 297 +D + + +AC+ F G+ G+ ++F K ++ A+++ F+ QFY + Sbjct: 252 LDVMGVAYEAGMACLHVLFIRQGKVLGSRSYFPKVPVDTDLAEVVQTFVGQFYLQGSEAR 311 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P +ILL E LL S G +V I +G++ + ++ A NA + T +LS Sbjct: 312 TLPGDILLDFTLPERELLAESLSALAGRRVNIQSKPRGDRARYLKLARTNAATALTTRLS 371 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + L + L I R+E +D SH MG + VV +NG ++ YR++N+ Sbjct: 372 QHSTIHQRLMALAEFLELDRIT-RMECFDISHTMGEQTIASCVVFDQNGPLRADYRRYNI 430 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + DD A M VL RR+ + I+ ++ PDV+++DGGKGQLS Sbjct: 431 IG--ITPGDDYAAMNQVLRRRYGKAIEEDK---------------IPDVILIDGGKGQLS 473 Query: 478 AAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRL 533 A+ V +L+V + R ++ +AKG R AG+E F + +GE + L P L+ IQ + Sbjct: 474 QAKQVFAELDVPWDKKRPILLGVAKGSDRKAGLETLFFEAEGEGVSLPPDAPALHVIQHI 533 Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RD+AH AI+ HRK+R K S L+ I G+GP R++ LL+ G ++ + +S E +A++ Sbjct: 534 RDDAHNHAISGHRKKRAKVKNTSALESIEGVGPKRRQQLLKYMGGLQPLMNASVEEIANV 593 Query: 593 EGISKKIACKIYNHFH 608 GIS +A KIY Sbjct: 594 PGISHALAEKIYYSLK 609 >gi|294140639|ref|YP_003556617.1| excinuclease ABC subunit C [Shewanella violacea DSS12] gi|293327108|dbj|BAJ01839.1| excinuclease ABC, C subunit [Shewanella violacea DSS12] Length = 609 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 204/616 (33%), Positives = 324/616 (52%), Gaps = 28/616 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D V+YVGKA +L+KR+ SY N + ++S IN+I TV Sbjct: 11 LKSVSSSPGVYRMYDADDVVIYVGKAKDLKKRLTSYFRKNLVHIKTKALVSHINSIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E +ALLLE + IK+ PR+N+LLRDDKS+PYIL+++ HK P L HR +G+YF Sbjct: 71 THSETDALLLENDYIKQYMPRYNVLLRDDKSYPYILLSN-HKHPRLAYHRGPKRDKGTYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + AV ++++ +Q+ F +R C D ++ R+RPCL +QI RCS PC +++SE+Y Sbjct: 130 GPYPNGGAVRESLHLMQKIFPIRQCDDLYYKSRSRPCLQYQIGRCSAPCVDKVTSEEYEA 189 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYN 240 V A FL G N + ++ M +YE A +RD++ AL + + Sbjct: 190 QVKLASLFLKGKNQQVMIELVSKMETCAQSLEYEKAASYRDQITALRRVAEQQEVLSSTG 249 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD---- 296 MD Y+ +AC F G+ G+ +++ +++ +I S F+ QFY + Sbjct: 250 DMDVIGAYYASGVACFHLLFIRNGKIFGSRSYYPSVPAQTDMDEIFSSFMIQFYLNGDSQ 309 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 + P+ ILLS ++ LE + KV+I + E+ + A+ NA + +L Sbjct: 310 RTLPKEILLSHSFDDLPQLEEAIQAALDKKVEIKTSVRSERANFLRLAVTNATNAVNTRL 369 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 S + + + + + +R+E +D SH MG S V VV G K YR++N Sbjct: 370 SHKNTVEQRFLLLEEALEMTTRIQRMECFDISHTMGESTVASCVVFNREGPNKADYRRYN 429 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + N + DD A M+ + RRF ++ K PD++ +DGG GQL Sbjct: 430 I--NGITPGDDYAAMKQAITRRFDKIDK---------------TGKIPDILFIDGGLGQL 472 Query: 477 SAAQGVLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRL 533 AQ ++ + N++ +I IAKG R G+E + E + + L+ IQ + Sbjct: 473 RIAQKIVDEKFANIDTAPLLIGIAKGEGRKPGLETLIYGENELSFSIAADSGALHLIQHI 532 Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDE+HRFAIT HR +R+K S L+ I G+GP R++ LLQ G ++ + +S LA + Sbjct: 533 RDESHRFAITGHRNKRQKTRNTSTLESIAGVGPKRRKALLQFLGGIQEVKGASVVELAKV 592 Query: 593 EGISKKIACKIYNHFH 608 GIS +A I++ Sbjct: 593 PGISLDMAQTIHDSLR 608 >gi|239978851|ref|ZP_04701375.1| excinuclease ABC subunit C [Streptomyces albus J1074] gi|291450734|ref|ZP_06590124.1| UvrABC system protein C [Streptomyces albus J1074] gi|291353683|gb|EFE80585.1| UvrABC system protein C [Streptomyces albus J1074] Length = 845 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 189/637 (29%), Positives = 311/637 (48%), Gaps = 46/637 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 Q+P+ PGVY+ D RV+YVGKA +L++R+ SY R M++ +++ + Sbjct: 10 KPGQIPDSPGVYRFRDDHRRVIYVGKAKSLRQRLSSYFQDLAGLHPRTRTMVTTASSVEW 69 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TEVEAL LE IK PRFN+ RDDKS+PY+ +T + P + R Sbjct: 70 TVVSTEVEALQLEYTWIKEFDPRFNVKYRDDKSYPYLAVTMNEEFPRVQVMRGQKKKGVR 129 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP+ A+ T++ L R F +R+C+ VF++ RPCLL I +C+ PC G IS Sbjct: 130 YFGPYGHAWAIRDTVDLLLRVFPVRTCSAGVFKNAARTGRPCLLGYIGKCAAPCVGRISP 189 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E + + E F++G ++ R M +A + +YE A RD + AL + Sbjct: 190 EDHRDLAEEFCDFMAGRTGAYLRRLERQMQEAAEEMEYERAGRLRDDIEALRRAMEKSAV 249 Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D ++ ++ A +Q G+ RG + A ++ + L+Q Y Sbjct: 250 VLADATDADLIAVAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEAVDTAGLVGHALQQLY 309 Query: 295 TDKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 ++ P+ +L+ E T + + G +V + +P++G+K+ ++E NA +S Sbjct: 310 GEERGEGVPKEVLVPALPENTEAVSQWLGDRRGTQVSLRIPQRGDKKSLMETVQRNAQQS 369 Query: 352 HTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 + S L++ + L P RIE YD SH G V MVV + Sbjct: 370 LVLHKTKRASDLTTRSRALEEIAEALELDSAPLRIECYDISHFQGDDVVASMVVFEDGLA 429 Query: 408 VKNQYRKFNLHPN-------DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE--- 457 K++YR+F + + QDD M V+ RRF + + + E ++Q+ Sbjct: 430 RKSEYRRFQIKGRAGDTQLWHGQGQDDVRSMHEVITRRFRRYLSDRERTGEWTEEQDATE 489 Query: 458 ---------------YSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPK 502 F P +V++DGG+ Q++AAQ L +L +++ I + +AK + Sbjct: 490 GGEVTASLTDEDGRPKRFAYPPQLVVVDGGQPQVAAAQRALDELGIDD-IAVCGLAKRLE 548 Query: 503 RSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEIN 561 E + + + +VL LY +QR+RDEAHRFAIT R +R K SPLD++ Sbjct: 549 -----EVWVPGQDDPVVLPRTSEGLYLLQRIRDEAHRFAITYQRAKRSKRIRTSPLDDVP 603 Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 G+G RK+ L++ FG+V+ + ++ E + + GI +K Sbjct: 604 GLGETRKQALVKHFGSVRKLRAATVEQICEVPGIGRK 640 >gi|304559285|gb|ADM41949.1| Excinuclease ABC subunit C [Edwardsiella tarda FL6-60] Length = 610 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 212/619 (34%), Positives = 331/619 (53%), Gaps = 31/619 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D V+YVGKA +L+KR+ SY + + ++ QI I TV Sbjct: 11 LKTVTNQPGVYRMYDAGAEVIYVGKAKDLKKRLASYFRRQLASRKTEALVRQIAQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IKR +PR+N+LLRDDKS+P I ++ + P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKRYQPRYNVLLRDDKSYPLIFLS-AERHPRLAVHRGAKRARGDYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + +AV +T+ LQ+ F +R C DSV+R+R+RPCL +QI+RC GPC +S E+Y Sbjct: 130 GPFPNANAVRETLALLQKLFPIRQCEDSVYRNRSRPCLQYQIQRCLGPCVAGLVSDEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IY 239 V + FLSG + + + + M +A+ +E A RD++ A+ + + Sbjct: 190 RQVEYVRLFLSGKDSQVIDALVARMEEASRALRFEEAARLRDQIQAVRRVTERQFISGDH 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + +ACI F GQ G+ ++F + + +T A++L F+ QFY Sbjct: 250 DDIDVIGVAFEAGMACIHVLFIRQGQVLGSRSYFPRVPAGTTLAEVLQTFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P IL+ + LL S + G ++ I +G++ + ++ A NA + K Sbjct: 310 MRTLPGEILIDFALPDRQLLADSISELAGRRIHIQSQPRGDRARYLKLARTNASTALNSK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L + +R+E +D SH MG V VV NG ++++YR++ Sbjct: 370 LSQQSTILQRLAQLEQVLR-RADIQRMECFDISHTMGEETVASCVVFDRNGPLRSEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A MR VL RR+ + + E+ PDV+ +DGGKGQ Sbjct: 429 NISD--ITPGDDYAAMRQVLRRRYGKALNEEK---------------IPDVIFIDGGKGQ 471 Query: 476 LSAAQGVLKKLNVE---NRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQ 531 L+ A+ V +L V + ++ IAKG R AG+E F + +GE L L+ IQ Sbjct: 472 LAQAKQVFAELEVPWDTHHPLLLGIAKGSDRKAGLETLFFEAQGEGFSLAPDSAALHLIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I GIGP R++ LL+ G ++ + +S + +A Sbjct: 532 HIRDESHNHAIAGHRKKRAKVRSTSALESIEGIGPKRRQQLLKYMGGMQPLRDASVDEIA 591 Query: 591 SIEGISKKIACKIYNHFHK 609 + GIS +A KI+ + Sbjct: 592 KVPGISVALAEKIHYALKQ 610 >gi|300716155|ref|YP_003740958.1| UvrABC system protein C [Erwinia billingiae Eb661] gi|299061991|emb|CAX59107.1| UvrABC system protein C [Erwinia billingiae Eb661] Length = 610 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 215/618 (34%), Positives = 335/618 (54%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY N + + ++ I I TV Sbjct: 11 LKSVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLTSYFRGNLASRKTEALVEAIRQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+PYI ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLS-ADAHPRLASHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T++ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLSLLQKIFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVTGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + + + FLSG + + ++ M A++ +E A RD++ A+ + N Sbjct: 190 QQIEYVRLFLSGKDDQVLNQLVARMESASISLKFEEAARLRDQIQAVRRVTERQFVSNNG 249 Query: 242 M--DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 D + + +AC+ F G+ G+ ++F K + + A+++ F+ QFY Sbjct: 250 DDLDVIGVAFDNGMACLHVLFIRQGKVLGSRSYFPKVPNGTELAEVVQTFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P +ILL E LL S G KV I +G++ + ++ A NA + K Sbjct: 310 ARTLPTDILLDFTLPEKDLLSDSLTGLAGRKVSIQSKPRGDRARYLKLARTNASTALVSK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + LK + LP I R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTIHQRLKALAEILDLPEIT-RMECFDISHTMGEQTVASCVVFDRNGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + ++ + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKDLEESK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L A+ V +L+V ++R ++ IAKG R AG+E F +GE L P L+ +Q Sbjct: 472 LGQAKNVFAELDVAWDKDRPILLGIAKGTDRKAGLETLFFEPEGEGFNLPPDSPALHVLQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RD++H AIT HR +R K S L+ I+GIGP R+++LL+ G ++ + +S + +A Sbjct: 532 HIRDDSHNHAITGHRNKRAKVKNTSALETIDGIGPKRRQMLLKYMGGLQPLMNASVDEIA 591 Query: 591 SIEGISKKIACKIYNHFH 608 + GIS+ +A KI+ Sbjct: 592 KVPGISQLLAEKIFYSLK 609 >gi|319943510|ref|ZP_08017792.1| excinuclease ABC subunit C [Lautropia mirabilis ATCC 51599] gi|319743325|gb|EFV95730.1| excinuclease ABC subunit C [Lautropia mirabilis ATCC 51599] Length = 769 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 217/648 (33%), Positives = 325/648 (50%), Gaps = 47/648 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+M D +G VLYVGKA +L KR++SY + RI M++++ I T Sbjct: 127 TLPALPGVYRMKDASGTVLYVGKARDLSKRVRSYFRKTLASPRIAQMVARVVEIDTTTVG 186 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK LKPRFNIL RDDK++P++ + H P + +R + + YFGP Sbjct: 187 SEAEALLLENNLIKSLKPRFNILFRDDKTYPFLKFS-AHAFPQISYYRGGTDRRAQYFGP 245 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + S AV + I LQ+ F LR+C DS F +R+RPCLL QI+RCS PC G I Y V Sbjct: 246 YPSSFAVREGIQVLQKIFHLRTCEDSYFANRSRPCLLHQIRRCSAPCVGLIDEAAYRRDV 305 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 + A FL GG+ + +++ M A + +E A + RDR++ALS + + N Sbjct: 306 NSAITFLKGGHKEILKEMEAGMQAAAEELRFEEAAVLRDRISALSRVLHQQSMEINADTD 365 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ----ILSYFLRQFYTDK 297 D ++ C+ G++ G F + + + +L FL Q Y Sbjct: 366 ADIIAIEQADGQVCLNLAMVRGGRHLGDKAHFPSHVAGLEDEEGLGSVLDAFLTQHYAGA 425 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P I+ + + ++ LL I + + P+Q ++R+ + QA NA + T+ L+ Sbjct: 426 TIPGVIICARKPQDPELLGILRAQAGHAVAWVQNPQQ-DRRRWLAQAHANAKIALTRHLA 484 Query: 358 TEISHQMILKDFTKKFAL---PHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + S +D L R+E +D SH MG + VV N QYR+ Sbjct: 485 IDGSQLRRTQDLLDVLGLSLEDPARLRVECFDISHTMGEATQASCVVYENNRMASGQYRR 544 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK------------------- 455 FN+ ++ DD A MR VL+RR+ + + Sbjct: 545 FNIQG--IEPGDDYAAMRQVLQRRYGRWATTRDEPAGDADAGHTSVSDADASTDTDETAA 602 Query: 456 -----------QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRS 504 PD+V++DGGKGQ+S+A+ V + L ++ + ++ +AKG R Sbjct: 603 PGEGRTASGRVARDDAARLPDIVLVDGGKGQISSAREVFESLGLDIGL-LVGVAKGEGRK 661 Query: 505 AGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEING 562 G+E G E LVL P L + ++RDEAHRFAIT R RR K S L+EI+G Sbjct: 662 VGLETLVFADGREPLVLGKESPALMLVAQIRDEAHRFAITGMRARRAKTRKVSRLEEIDG 721 Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +G R++ LL FG ++ I +S E LAS+EGIS +A IY H++ Sbjct: 722 VGARRRQRLLSRFGGLRGIMAASVEDLASVEGISMSLAESIYQQLHQS 769 >gi|300691964|ref|YP_003752959.1| UvrABC system protein C (excinuclease ABC subunit C) [Ralstonia solanacearum PSI07] gi|299079024|emb|CBJ51686.1| UvrABC system protein C (Excinuclease ABC subunit C) [Ralstonia solanacearum PSI07] Length = 669 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 211/641 (32%), Positives = 322/641 (50%), Gaps = 52/641 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P PGVY+ D G VLYVGKA +L+KR+ SY + RI M+++I +I TV Sbjct: 44 RLPNLPGVYRYFDAQGSVLYVGKARDLKKRVSSYFTKTLLSPRIAMMVAKIAHIETTVVR 103 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T +H P + +R ++ + YFGP Sbjct: 104 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-QHAYPRMAYYRGATDRKHQYFGP 162 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV +++ LQ+ F LR+C D+VF +RTRPCLL QI RC+ PC IS E Y V Sbjct: 163 FPSAHAVRESMQILQKVFQLRTCEDTVFNNRTRPCLLHQIHRCTAPCVQAISQEDYARDV 222 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS----IYN 240 A FL G + + + M + + ++E A RD++ ALS + + Sbjct: 223 ANAAGFLLGRQDEVMQTLQDKMQRHAVALEFEQAAAVRDQIGALSTVLKRQSVEEVGQAS 282 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT------------------------ 276 +D ++ AC+ G++ G +F Sbjct: 283 DIDILAVAIKGGHACVNLAMVRGGRHLGDKAYFPTHVEEGAAIVGVDVEADVPEGAETQP 342 Query: 277 ----DSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVP 332 D+E IL F+ Q Y D+ P +++S + L+E + G +V + Sbjct: 343 EPARDAERMARDILEAFVAQHYLDQFVPPVLVVSHPIQAAGLIEALAVQA-GRRVSVVRQ 401 Query: 333 KQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP---KRIEIYDNSH 389 QG +R +E A A S ++LS + S Q + + + R+E +D SH Sbjct: 402 PQGARRAWLEMAEKGAELSLARRLSEQGSQQARTRALAETIGIDLEDLAALRVECFDISH 461 Query: 390 IMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL 449 G + VV + +YR++N+ + DD A MR VL RR+ ++++ Sbjct: 462 TAGEATQASCVVFHSHAMQNGEYRRYNIQG--ITPGDDYAAMRQVLTRRYQKVVEQAAE- 518 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 P P VV++DGGKGQ+ A+ V ++L ++ + ++ +AKG R G+E Sbjct: 519 ---------DAPDMPHVVLIDGGKGQVEVARQVFEELGLDIGL-LVGVAKGEGRKVGLET 568 Query: 510 FFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567 L L L + ++RDEAHRFAIT R +R KA S L+EI GIG R Sbjct: 569 LVFADSRPSLELGQGSAALMLVAQIRDEAHRFAITGMRAKRAKARNTSRLEEIEGIGAKR 628 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LL FG ++ + +S E LA++EGIS+ +A +IY H Sbjct: 629 RQRLLARFGGLRGVMAASVEELATVEGISQTLAEEIYRQLH 669 >gi|254448056|ref|ZP_05061520.1| excinuclease ABC, C subunit [gamma proteobacterium HTCC5015] gi|198262482|gb|EDY86763.1| excinuclease ABC, C subunit [gamma proteobacterium HTCC5015] Length = 604 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 198/609 (32%), Positives = 326/609 (53%), Gaps = 23/609 (3%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 PGVY+M + +LYVGKA +L++R+ SY ++ + +++QI +I T+T TE Sbjct: 14 TRPGVYRMYNAEDELLYVGKAKSLKRRLSSYFRNSALAVKTQALVAQIEHIEVTITQTEA 73 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGSYFGPFA 126 EAL+LE+++IKR KPR+NILL+DDKS+P I I+ + P + +R YFGP+ Sbjct: 74 EALILESHLIKRHKPRYNILLKDDKSYPLIRIS-QDAFPRISYYRGRRDRKDAEYFGPYP 132 Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186 S AV+ T++ LQ+ F +R C DS +++R+RPCL +QIKRC+ PC G +S E Y + Sbjct: 133 SSGAVKHTLDLLQKLFRIRQCEDSYYKNRSRPCLQYQIKRCTAPCVGYVSEEDYARDLEN 192 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDC 244 ++FLSG + + + + M+ A+ ++E A ++RD++ + + + N D Sbjct: 193 TRRFLSGKSVEVIDDLVARMDSASQNLEFEKAALYRDQIRDVQQVVDTQGVQSNSGNADA 252 Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304 +L + C+ G + G ++F K +L F+ Q Y P+ I+ Sbjct: 253 VALCSEGGVYCVSIHSVRGGHSLGAKSYFPKIPKGEQGESVLMAFMAQHYLSHDAPQEIV 312 Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364 S +A E LL + ++VKI + +K + A NA + KL++ Sbjct: 313 ASLDAAEAELLSEALTLHSDHRVKIIRRPRSDKAAWLRLAQTNAQHALAAKLASREGMGR 372 Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424 L + + P+R+E +D SH G V VV G K+ YR+FN+ + ++ Sbjct: 373 RLAALQQLIGIDQPPQRMECFDISHTGGERTVASCVVFDAQGARKDLYRRFNI--DGIEP 430 Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484 DD A M L+RR+S++ + +PD++ +DGGKGQ++ A+ VL Sbjct: 431 GDDYAAMHQALKRRYSKVQRE--------------SGRFPDLLFIDGGKGQVAEAKAVLD 476 Query: 485 KLNVENRITIISIAKGPKRSAGME-KFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 +L + I I+ ++KGP+R AG E + ++ + L+ IQ++RDEAHRFAIT Sbjct: 477 ELGITEMI-IVGVSKGPERRAGEEQIVLPHQERLFRVDAANAGLHLIQQIRDEAHRFAIT 535 Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR RR KA S L+ I G+G R++ L++ FG ++ I R+ + +A + GIS+ A Sbjct: 536 GHRARRGKARKTSVLEGIPGVGAKRRQQLIKHFGGIQGIMRAGVDDIARVPGISRSTAEA 595 Query: 603 IYNHFHKNT 611 +Y + N Sbjct: 596 VYEAINPNA 604 >gi|257455127|ref|ZP_05620365.1| excinuclease ABC subunit C [Enhydrobacter aerosaccus SK60] gi|257447460|gb|EEV22465.1| excinuclease ABC subunit C [Enhydrobacter aerosaccus SK60] Length = 629 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 204/614 (33%), Positives = 319/614 (51%), Gaps = 30/614 (4%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+ML G ++YVGKA +L+ R+ SY + ++ +I+NI +T Sbjct: 36 KRLPNLPGVYKMLGKNGDIIYVGKAKSLKSRVNSYFAKTIDHPKTRALVQRIDNIETIIT 95 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-STIQGSYF 122 +E EALLLE N+IK +P +N+LLRDDKS+ Y+ I+ P L R +G +F Sbjct: 96 RSETEALLLEQNLIKLHRPPYNVLLRDDKSYLYVFISADKPYPRLAYGRGKGQHQKGRFF 155 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF S A ++T+ +Q+ F +R C ++ F R RPCL +QIKRC PC G +S E+Y + Sbjct: 156 GPFPSAHAAKQTLLMMQKMFMVRQCTNTFFAQRQRPCLEYQIKRCKAPCVGLVSPEEYAD 215 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--N 240 V+ +FL G +L+ K+ M QA ++E A ++RD+L+ L +Q Sbjct: 216 DVNNTIRFLKGEGTDLQVKLVGKMEQAAEDMNFEQAALYRDQLSMLREVQAKQAVYTVKG 275 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KP 298 D ++ + C+ GQ G +F DSE+ A LS F+ FY Sbjct: 276 EADIIAIASQAGITCVHVMNVRNGQVLGGNNYFPDVDSENDIADNLSEFVSSFYFQVSDD 335 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 PE +++S E + + + + + +G KV I + ++ + + A +NA+ + KL Sbjct: 336 LPEELIISHELPDQNAMTEALTETFGKKVTIKTKIREQRNEWLTLAQMNANNALQTKLGD 395 Query: 359 E---ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 S L + K+ RIE +D SH MG + + VV + G K YR++ Sbjct: 396 YLEVKSRFNALNEVLKEALQGKSLDRIECFDISHTMGEATIASCVVADQGGLRKRDYRQY 455 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 +H + DD A M+ VL RR+S+ PD++++DGGKGQ Sbjct: 456 AIHG--ITGGDDYAAMKQVLNRRYSK-------------------QPLPDLLLIDGGKGQ 494 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 L+ A+ VL +L + + ++ +AKG R AG+E E L L L+ I +RD Sbjct: 495 LNMAKDVLSELGILTQTLLVGVAKGEGRKAGLEVLHFIDREPLDLPADSKALHLIMHIRD 554 Query: 536 EAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFAIT HRK+R K+ + S L+ I G+G R+R LL FG ++ + +S + + + G Sbjct: 555 EAHRFAITAHRKKRDKRRSSSVLEAIPGLGEKRRRELLNHFGGLQQLLGASQDEIGQVNG 614 Query: 595 ISKKIACKIYNHFH 608 I K +A IY H Sbjct: 615 IGKVMANTIYKVLH 628 >gi|254384196|ref|ZP_04999540.1| UvrABC system protein C [Streptomyces sp. Mg1] gi|194343085|gb|EDX24051.1| UvrABC system protein C [Streptomyces sp. Mg1] Length = 682 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 185/623 (29%), Positives = 316/623 (50%), Gaps = 34/623 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 Q+P+ PGVY+ D RV+YVGKA +L++R+ +Y + R M++ ++ + Sbjct: 23 KPGQIPDSPGVYRFRDEHRRVIYVGKAKSLRQRLANYFQDVASLHPRTATMVTTAASVEW 82 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TEVEAL LE + IK PRFN+ RDDKS+P + +T + P + R Sbjct: 83 TVVSTEVEALQLEYSWIKEYDPRFNVKYRDDKSYPSLAVTMNEQYPRVQVMRGPKKKGVR 142 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP+ A+ +T++ + R F +R+C+ VF+ RPCLL I +CS PC G ++ Sbjct: 143 YFGPYGHAWAIRETVDLMLRVFPVRTCSAGVFKRSAQIGRPCLLGYIGKCSAPCVGRVTP 202 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E++ E + F++G ++ + M++A + +YE A RD + AL N Sbjct: 203 EEHRELAEDFCDFMAGRTGTYLSRLEQRMHEAAEEMEYEKAARLRDDIGALRRAMEKNAV 262 Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D ++ ++ A +Q G+ RG + A ++ + L+Q Y Sbjct: 263 VLADATDADLIAVAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEAVDTAGLVEHALQQLY 322 Query: 295 TD---KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 + + P+ +L+ E+T L ++ G +V + VP++G+K+ ++E NA +S Sbjct: 323 GEEKGEAVPKEVLVPALPEDTPALSQWLAERRGAQVSLRVPQRGDKKSLMETVHRNAQQS 382 Query: 352 HTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 + S L++ + L P RIE +D SH+ G V MVV + Sbjct: 383 LALHKTKRASDLTTRSRALEEIAEALELDSAPLRIECFDISHLQGDDVVASMVVFEDGLA 442 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNE-----------ENLNFHPKKQ 456 K++YR+F + + QDD M V+ RRF + ++ + E+ + Sbjct: 443 RKSEYRRFQIKS--FEGQDDVRSMHEVVSRRFRRYLQEKLKTGEWSPEEGEDPLAEDDGR 500 Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE 516 F P +V++DGG+ Q++AA+ L++L V++ + + +AK + E + + + Sbjct: 501 PKRFAYPPQLVVVDGGQPQVAAAKRALEELGVDD-VAVCGLAKRLE-----EVWLPGEDD 554 Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYS-PLDEINGIGPLRKRLLLQSF 575 +VL LY +QR+RDEAHRFAI R +R K S PLDE+ G+G RK+ LL+ F Sbjct: 555 PVVLPRTSEGLYLLQRVRDEAHRFAIQYQRSKRGKRLKSGPLDEVPGLGESRKQALLKHF 614 Query: 576 GTVKMISRSSPETLASIEGISKK 598 G+VK + +++ + + + GI +K Sbjct: 615 GSVKKLRQATIDQICEVPGIGRK 637 >gi|284990547|ref|YP_003409101.1| excinuclease ABC subunit C [Geodermatophilus obscurus DSM 43160] gi|284063792|gb|ADB74730.1| excinuclease ABC, C subunit [Geodermatophilus obscurus DSM 43160] Length = 690 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 188/630 (29%), Positives = 316/630 (50%), Gaps = 38/630 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +PE PGVY+ D GRV+YVGKA NL++R+ SY R M++ ++ +TV Sbjct: 13 SIPESPGVYKFRDPNGRVVYVGKAKNLRQRLNSYFADVAGLHPRTRQMVTTAASVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE N IK PRFN+ RDDKS+P + +T + P L R YFG Sbjct: 73 GTEVEALQLEYNWIKEFDPRFNVRYRDDKSYPSLAVTLNEEYPRLQVMRGPKKKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P+A A+ +T+++L R F R+C++ VF+ RPCLL I +C+ PC G +S+E++ Sbjct: 133 PYAHAWAIRETLDTLTRVFPARTCSNGVFKRAGQIGRPCLLGYIGKCAAPCVGRVSAEEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + V +F++G + ++ R M +A +YE A RD L AL + Sbjct: 193 RQIVDGFCEFMAGRTDQMIRRLEREMAEAAEAMEYEKAARLRDDLGALRRAMEKQAVVLG 252 Query: 241 R---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294 D + ++ A +Q G+ RG + + E + +++ F+ Q Y Sbjct: 253 NGTDADVVAFAQDELEASVQVFHVRGGRVRGQRGWIVDKVEEVSTGELVEQFVLQVYGGV 312 Query: 295 --------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 + P +L+ E ++ + E + G +V + VP++G+KR ++E Sbjct: 313 DEATGVGEAGEAVPREVLVPELPDDADVYEELLSELRGSRVSLRVPQRGDKRALLETVER 372 Query: 347 NAHRSHTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVV 402 NA + + S + L + + LP P RIE D SH+ + V MVV Sbjct: 373 NAKEAFARHRVKRSSDLTARSLALSELQEALELPDAPLRIECIDVSHVQQTNVVASMVVF 432 Query: 403 GENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFH-----PKKQE 457 + K+ YR+F++ DD A M V+ RRF++ +K E++ + + Sbjct: 433 EDGLAKKSDYRRFSV----THGTDDTAAMAEVVRRRFARHLKEEQDRRDEQGVAAEEGRP 488 Query: 458 YSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA 517 F P+++++DGG Q++AA L +L + + + + +AK + E + + + Sbjct: 489 RRFAYPPNLLVVDGGAPQVAAAARSLDELGIVD-VAVCGLAKRME-----EVWLPGESDP 542 Query: 518 LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFG 576 ++L LY +QR+RDEAHRFAIT HR++R + S LD++ G+G R++ L++ FG Sbjct: 543 VILPRTSEALYLLQRVRDEAHRFAITYHRQKRSTSMLVSLLDDVPGLGETRRKALMKQFG 602 Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNH 606 ++K + ++ E L + GI ++ A + Sbjct: 603 SLKRLRAATVEELMVVPGIGRRTAEAVLAA 632 >gi|239626642|ref|ZP_04669673.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516788|gb|EEQ56654.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 646 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 189/626 (30%), Positives = 314/626 (50%), Gaps = 22/626 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M + ++Y+GKA +L+ R++ Y S+ N T +I M+S I + Sbjct: 7 ELKKLPASPGVYLMHNNRDEIIYIGKAISLKNRVRQYFQSSRNKTAKIEQMVSHIAWFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-G 119 +T +E+EAL+LE N+IK +PR+N +L+DDKS+PYI T + P L RD Sbjct: 67 ILTDSELEALVLECNLIKEHRPRYNTMLKDDKSYPYIKATMGEEFPRLLFARDMKKDGRS 126 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISS 177 YFGP+ S AV+ T++ + + + +R+C+ S+ + R RPCL + IK+C PC G I++ Sbjct: 127 KYFGPYTSAGAVKDTLDLIHKLYRIRTCSRSLPKDIGRDRPCLNYHIKQCDAPCQGYITA 186 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 ++Y +A FL+G L + + M A+ D+E AI +R+ L ++ + Sbjct: 187 QEYQANFSQALDFLNGRYDPLLKTLQEKMENASENLDFERAIEYRELLNSVKQVAQKQKI 246 Query: 238 IYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + M D ++ ++ A +Q F G+ G F + +IL F++QFY Sbjct: 247 TSSSMEDRDIVAMARDEKDAVVQVFFIREGKLIGRDHFHVSAAMAENEGEILDSFVKQFY 306 Query: 295 TDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----H 349 P P + L + ++ + G KV+I VPK+GEK +++E A NA Sbjct: 307 AGTPFIPRELWLQHPLADEEVISQWLSAKRGQKVRIVVPKKGEKERLVELAARNAALVLS 366 Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 + + E+ + + +R+E +D S+ G +VG MVV + + Sbjct: 367 QDKERIKKEELRTIGAMNQ-IGELIGIGGIRRMEAFDISNTSGIESVGSMVVYEDGKPKR 425 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVI 468 + YRKF + V+ +D A M VL RRFS ++ E SF +PD+++ Sbjct: 426 SDYRKFKIKT--VQGPNDYASMEEVLTRRFSHGMREVRELEEKGGDLNLGSFTRFPDLIM 483 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 +DGG+GQ++ A VL KL + I + + K + ++ Sbjct: 484 MDGGRGQVNIALEVLDKLGLS--IPVCGMVKDDSHRTRG---LYYNNIEVPIDRHSEGFR 538 Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 I R++DEAHRFAI HR R K S LD+I GIGP R++ L++ F ++ + +S E Sbjct: 539 LITRIQDEAHRFAIEYHRSLRGKGQVKSILDDIPGIGPARRKALMRHFKDIESVRAASVE 598 Query: 588 TLASIEGISKKIACKIYNHFHKNTSH 613 L ++K+ A +Y FH++ Sbjct: 599 ELEQAPQMNKRAALAVYGFFHEDRPE 624 >gi|54025564|ref|YP_119806.1| excinuclease ABC subunit C [Nocardia farcinica IFM 10152] gi|81374328|sp|Q5YTP9|UVRC_NOCFA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|54017072|dbj|BAD58442.1| putative excision nuclease ABC subunit C [Nocardia farcinica IFM 10152] Length = 673 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 184/667 (27%), Positives = 300/667 (44%), Gaps = 67/667 (10%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA +L+ R+ SY + R M++ ++ +TV Sbjct: 13 TIPVEPGVYKFRDSYGRVIYVGKAKSLRSRLNSYFADVASLHPRTKQMVTTAASVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE N IK PRFN+ RDDKS+P + +T + P L+ +R + YFG Sbjct: 73 STEVEALQLEYNWIKEFDPRFNVRYRDDKSYPVLAVTLNEEYPRLFVYRGARKKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P+A A+ +T++ L R F R+C+ VF+ RPCLL I +CS PC G +S+E++ Sbjct: 133 PYAHAWAIRETLDLLLRVFPARTCSTGVFKRHNQIGRPCLLGYIDKCSAPCVGRVSAEEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 V + FL+G + ++ R M+ A D+E+A RD + AL + Sbjct: 193 RAIVEDFCDFLAGRTDKMVRELERRMHAAAEDLDFETAARLRDDVQALRRALEKQAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT--------DSESTNAQILSYF 289 D + ++ +Q G+ RG + + + ++ F Sbjct: 253 TGTDADVIAFATDELEVAVQIFHVRDGRVRGQRGWVVDKSGDAVDSGTGDDETGALVEQF 312 Query: 290 LRQFYTDK--------------PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQG 335 L QFY ++ P +L+ + L+ + G V++ VP++G Sbjct: 313 LTQFYGEQVAYADQTPDEQPATVVPREVLVPQLPAGHEQLQEWLSRLRGSAVRLRVPQRG 372 Query: 336 EKRKIIEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIM 391 +K+ + E NA + Q S L+D L P RIE D SH+ Sbjct: 373 DKKALAETVERNAKEALAQHKLKRAGDLTSRSAALQDIQDALDLDSAPLRIECVDISHVQ 432 Query: 392 GCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLN 450 G V +VV + K+ YR + + + + DD + V RRF +L K + Sbjct: 433 GTDVVASLVVFEDGLPRKSDYRHYAIKEAAGEGRSDDVGSIAEVTRRRFYRLRKERDEAE 492 Query: 451 --------------------------FHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484 + F P++ ++DGG Q++AA VL Sbjct: 493 RDELDGTAAGAPLVDDDETPTSRPGIDPTTGRPRKFAYPPNLYVVDGGAPQVAAAAEVLD 552 Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544 +L + + + +I +AK + E + + + ++L L+ +QR+RDEAHRFAIT Sbjct: 553 ELGITD-VAVIGLAKRLE-----EVWVPGEPDPVILPRNSEALFLLQRVRDEAHRFAITF 606 Query: 545 HRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 HR +R + S LD + G+G R+ L+ FG+V + ++ E + + GI A + Sbjct: 607 HRSKRSRRMTASALDSVRGLGAARRTALVTHFGSVAKLKEATVEEITEVPGIGVATAKAV 666 Query: 604 YNHFHKN 610 H+ Sbjct: 667 LAALHQE 673 >gi|291616973|ref|YP_003519715.1| UvrC [Pantoea ananatis LMG 20103] gi|291152003|gb|ADD76587.1| UvrC [Pantoea ananatis LMG 20103] Length = 610 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 215/616 (34%), Positives = 340/616 (55%), Gaps = 31/616 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY+M D +G V+YVGKA +L+KR+ SY +N + + ++S I++I TVT Sbjct: 13 TVTSEPGVYRMYDASGTVIYVGKAKDLKKRLTSYFRTNVGSRKTEALVSNIHHIDVTVTH 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLE N IK +PR+N+LLRDDKS+PYI ++ P L HR + +G YFGP Sbjct: 73 TETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLS-SDVHPRLAMHRGAKHAKGEYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEF 183 F + AV +T+ LQ+ F +R C +SV+R+RTRPCL +QI RC GPC +S E+Y + Sbjct: 132 FPNGYAVRETLALLQKVFPIRQCENSVYRNRTRPCLQYQIGRCLGPCVAGLVSEEEYAQQ 191 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NR 241 + FL+G + + + R M A+ +E A RD++ A+ + + Sbjct: 192 TDYVRLFLAGKDDQVLNLLVRRMEDASHALRFEEAARLRDQIQAVRRVTEKQFVSNQGDD 251 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----K 297 +D + ++ +AC+ F G+ G+ ++F K +++ A+++ F+ QFY + Sbjct: 252 LDVIGVAYDAGMACLHVLFIRQGKVLGSRSYFPKVPADTDLAEVVQTFVGQFYLQGSEMR 311 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P ILL E LL S + G +V I +G++ + ++ A NA + +LS Sbjct: 312 TLPGEILLDFTLPERELLSESLTELAGRRVNIQSKPRGDRARYLKLARTNAGSALKTRLS 371 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + L + L I R+E +D SH MG + VV +NG ++ YR++N+ Sbjct: 372 QHSTIHQRLTALAEFLELDKIT-RMECFDISHTMGEQTIASCVVFDQNGPLRADYRRYNI 430 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + DD A M VL RR+ + I+ E+ PDV+++DGGKGQL+ Sbjct: 431 --AGITPGDDYAAMNQVLRRRYGKAIEEEK---------------IPDVILIDGGKGQLA 473 Query: 478 AAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRL 533 A+ V +L+V ++R ++ +AKG R AG+E F + +GE + L+ P L+ IQ + Sbjct: 474 QAKQVFAELDVSWDKSRPILLGVAKGTDRKAGLETLFFEAEGEGISLSPDAPALHVIQHI 533 Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RD+AH AI+ HRK+R K S L+ I G+GP R++ LL+ G ++ + +S E +A++ Sbjct: 534 RDDAHNHAISGHRKKRAKVKNTSALESIEGVGPKRRQQLLKYMGGLQPLMNASVEEIANV 593 Query: 593 EGISKKIACKIYNHFH 608 GIS +A KIY Sbjct: 594 PGISHALAEKIYYSLK 609 >gi|331006167|ref|ZP_08329492.1| Excinuclease ABC subunit C [gamma proteobacterium IMCC1989] gi|330420023|gb|EGG94364.1| Excinuclease ABC subunit C [gamma proteobacterium IMCC1989] Length = 608 Score = 521 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 219/616 (35%), Positives = 350/616 (56%), Gaps = 26/616 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + GVYQM D ++LYVGKA NL+ R+ SY ++ + ++ +I NI+ T+ Sbjct: 11 LKTVSRQAGVYQMFDANDKILYVGKAKNLKNRLSSYFKQSDLPIKTQVLVEKIANIQVTI 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +E AL+LE ++IK L+P++NILL+DDKS+PYI I+D P + HR +G Y+ Sbjct: 71 AESETAALVLEQSLIKSLRPQYNILLKDDKSYPYIFISDS-DYPRISFHRGMKRKKGDYY 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF + AV ++++ +Q+TF +R C DSVF +RTRPCL +QI RC+ PC G I E+Y Sbjct: 130 GPFPNSGAVYQSLSFIQKTFRVRQCEDSVFSNRTRPCLQYQINRCTAPCVGLIEKEQYKA 189 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA--ALSHIQNHNDSIYN 240 + A FL+G + L +++A M + D+E A ++RD+++ + + +S Sbjct: 190 DMAHAALFLTGKSDELMKQLADKMEASASTLDFEEAGVYRDQISALRVIQTDHDLESDKG 249 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY---TDK 297 ++D F++ CI + G+ G+ +FF K + ++ LS FL QFY + Sbjct: 250 QIDVFAMAKKGGSLCIHLLYIRHGRVLGSKSFFPKNKLDLEDSDFLSAFLEQFYIAHQHR 309 Query: 298 PCPENILLSEEA--EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P+ I+++ EE ++LE + ++ K+ I + +++K + AL A ++ T Sbjct: 310 ELPQEIVINYPLNSEEKNVLEQALQERCNRKIPILHRVRAQRQKWLITALTAAEQNLTTH 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L+T+ + Q + L IPKR+E +D SH G V VV ++G + + YR+F Sbjct: 370 LNTKQNLQQRFVALQEAMELDDIPKRLECFDISHTFGELTVASCVVFDQSGALTSDYRRF 429 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M + RR+++L K E PD++++DGGKGQ Sbjct: 430 NIEG--ITESDDYAAMEQAISRRYTRLQKGE--------------GLLPDILVVDGGKGQ 473 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 L A+ VL +L V N++ I+ IAKG R AG E ++ G+ VLN P L+ +Q +RD Sbjct: 474 LGVAKAVLAELGV-NQVMILGIAKGTTRKAGFETLVLESGKEKVLNSDSPALHLLQEIRD 532 Query: 536 EAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFAIT H++RR KK S L+ I G+G R+R LL+ FG ++ + ++ + LA ++G Sbjct: 533 EAHRFAITGHKQRRDKKRTTSTLEGIAGVGAKRRRELLRHFGGLQAVKAANADELAKVDG 592 Query: 595 ISKKIACKIYNHFHKN 610 ISKKIA IY+ H Sbjct: 593 ISKKIAEDIYSALHSE 608 >gi|170726504|ref|YP_001760530.1| excinuclease ABC subunit C [Shewanella woodyi ATCC 51908] gi|169811851|gb|ACA86435.1| excinuclease ABC, C subunit [Shewanella woodyi ATCC 51908] Length = 609 Score = 521 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 208/618 (33%), Positives = 328/618 (53%), Gaps = 28/618 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D V+YVGKA +L+KR+ SY N + ++S I NI TV Sbjct: 10 LQSVSSSPGVYRMYDSEETVIYVGKAKDLKKRLTSYFRKNLPNVKTHALVSHIANIDVTV 69 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E +ALLLE + IK+ PR+N+LLRDDKS+PYIL++ HK P L HR +GSYF Sbjct: 70 THSETDALLLENDYIKQYMPRYNVLLRDDKSYPYILLS-HHKHPRLAYHRGPKRHKGSYF 128 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + AV ++++ +Q+ F +R C D ++ R+RPCL +QI RCS PC +I+ E+Y Sbjct: 129 GPYPNGGAVRESLHLMQKIFPIRQCEDVYYKARSRPCLQYQIGRCSAPCVAKINDEEYAA 188 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--N 240 V A FL G + + ++ M A +YE A RD+++AL + + + Sbjct: 189 QVKLASLFLKGRDQQVMSELVLKMETAAHMLEYEQAARFRDQISALRRVAEQQEVSHTSG 248 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD---- 296 MD Y+ +AC F G+ G+ +++ K +++ ++LS F+ QFY + Sbjct: 249 DMDVIGAYYASGVACFHLLFIRDGKIFGSRSYYPKVPAQTELDEVLSSFMLQFYLNADSQ 308 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 + P+ ILLS + + +L + KV+I + E+ K ++ AL NA + +L Sbjct: 309 RTVPKEILLSHDFADLPVLVDAIQSALDKKVEIKTKVRSERAKFLKLALTNATNAVNTRL 368 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 S + + + + + R+E +D SH MG S V VV G K +YR++N Sbjct: 369 SHKSTVEQRFLLLEEAIEVSKAVTRMECFDISHTMGESTVASCVVFNREGPNKAEYRRYN 428 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + + DD A M+ L RRF + K PD++ +DGG GQL Sbjct: 429 I--SGITPGDDYAAMKQALTRRFDNIEK---------------SGKVPDILFIDGGTGQL 471 Query: 477 SAAQGVLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRL 533 AQ V+ + N++ +I +AKG R G+E + E + L L+ IQ + Sbjct: 472 RIAQKVVDEKFANLDVAPLLIGVAKGEGRKPGLETLIYGENEQSFTLPADSGALHLIQHI 531 Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDE+HRFAIT HR +R+K S L+ I G+GP R++ LLQ G ++ + +S LA + Sbjct: 532 RDESHRFAITGHRNKRQKTRNTSTLESIAGVGPKRRKALLQYLGGIQEVKGASVSELAKV 591 Query: 593 EGISKKIACKIYNHFHKN 610 GIS ++A I++ + Sbjct: 592 PGISVEMAQTIHDSLRGS 609 >gi|313837392|gb|EFS75106.1| excinuclease ABC subunit C [Propionibacterium acnes HL037PA2] gi|314927935|gb|EFS91766.1| excinuclease ABC subunit C [Propionibacterium acnes HL044PA1] gi|314971776|gb|EFT15874.1| excinuclease ABC subunit C [Propionibacterium acnes HL037PA3] gi|328907057|gb|EGG26823.1| excinuclease ABC, C subunit [Propionibacterium sp. P08] Length = 671 Score = 521 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 194/646 (30%), Positives = 317/646 (49%), Gaps = 45/646 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D G+V+YVGKA NL+ R+ SY + R M++ ++++TV Sbjct: 13 TIPTQPGVYRFSDEHGQVIYVGKAKNLRNRLNSYFQDISALHPRTQRMVTTAAHVQWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 EVE+L LE IK PRFN++ RDDKS+P++ T + P ++ R + Y+G Sbjct: 73 QNEVESLQLEYTWIKEFDPRFNVMYRDDKSYPWLCFTWTDEYPRVFVGRGAHHKGWRYYG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180 PF A+ T+ +L R F +RSC+ VF +++ RPCLL I +CS PC I+ E + Sbjct: 133 PFGQAWAIRDTVETLLRVFPMRSCSTGVFNRAKNQGRPCLLGYIGKCSAPCVERITPETH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E V E F++G + +++ M QA+ ++E A + RD L ALS N + Sbjct: 193 REIVDEFCDFMAGRTTKIVKRLKAEMVQASENLEFERAAVIRDSLGALSKTLERNAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294 D S+ + ++ G+ RG + ++ A+++ FL Q Y Sbjct: 253 DGTDADVISMALDPLEVGVKIFHVRGGRIRGERGWVADRADDADEAELMETFLTQLYGVN 312 Query: 295 ----------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344 P +L+S ++ F + G V+I VP++G+K +++ Sbjct: 313 ASDGQVRDDGHGNAIPPLVLVSTNPTNPDVMSTIFSSERGSHVEIRVPRRGDKATLMDTV 372 Query: 345 LINAHRSHTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMV 400 NA + Q S L++ + L P R+E YD SHI G + VG MV Sbjct: 373 TRNAQETLAQHKLKRASDLATRTRALEEIQQALGLDRAPLRLESYDVSHIQGTNVVGSMV 432 Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE------------- 447 V + K++YR+F + + DD A MR VL RR +L+++ + Sbjct: 433 VFEDGMPRKSEYRRFIIKG--FEGSDDFAAMREVLFRRLRRLVEDRDAMVAAQAPDGDVG 490 Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507 +L F P ++++DGG Q+ AAQ VL++ +E+ I + +AK + Sbjct: 491 SLIDPTTGAPRKFAYAPHLIVVDGGAPQVHAAQQVLEEFGLEDEIALCGLAKRLE----- 545 Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPL 566 E + + ++L LY +QRLRDEAHRFAIT HR +R KA S LD I G+G Sbjct: 546 EVWLPDEEWPVILPRTSEGLYLLQRLRDEAHRFAITFHRSKRSKAMVESVLDGIPGLGET 605 Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 R++ L+ FG+V+ + +++ + +A + G K+A ++ ++ Sbjct: 606 RRKALVSHFGSVRALRKATVDDIAEVAGFGPKLAGEVVAALSQDKP 651 >gi|302525893|ref|ZP_07278235.1| excinuclease ABC, C subunit [Streptomyces sp. AA4] gi|302434788|gb|EFL06604.1| excinuclease ABC, C subunit [Streptomyces sp. AA4] Length = 679 Score = 521 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 190/665 (28%), Positives = 313/665 (47%), Gaps = 59/665 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 +P+ PGVY+ D A RV+YVGKA +L+ R+ SY + R M++ ++ + Sbjct: 13 QPGSIPDSPGVYKFRDDAKRVIYVGKAKSLRSRLNSYFADLSGLHPRTRQMVTTAASVEW 72 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TEVEAL LE N IK PRFN+ RDDKS+P + +T + P L+ +R + Sbjct: 73 TVVGTEVEALQLEYNWIKEFDPRFNVRYRDDKSYPVLAVTLNEEFPRLHVYRGARKKGVR 132 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP++ A+ +T++ L R F R+C+ VFR RPCLL I +CS PC G +S+ Sbjct: 133 YFGPYSHAWAIRETLDLLLRVFPARTCSAGVFRRHGQIGRPCLLGYIDKCSAPCVGRVSA 192 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 +++ V + FL+G + +++ R M A+ + ++E A RD L AL Sbjct: 193 DEHRAIVEDFCDFLAGRTDAMMKRLEREMAAASEELEFERAARLRDDLGALRRAMEKQAV 252 Query: 238 IYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 ++ D + H++ A +Q G+ RG + + E ++ +FL QFY Sbjct: 253 VFGDGTDADVVAFAHDELEAAVQVFHVRGGRVRGQRGWVIDKAEEMDVQALVDHFLTQFY 312 Query: 295 TDKP-------------CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 ++ P +L+ E + +E G +V++ V ++G+K+ + Sbjct: 313 GEESDRAGRDDLETGPVVPREVLVPELPADAEAVEEWLSGLRGSRVRLRVAQRGDKKALA 372 Query: 342 EQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVG 397 E NA + TQ + L++ AL P RIE D SHI G V Sbjct: 373 ETVERNAKEAFTQHKLRRAGDLTARSAALQELQDYLALDTAPLRIECIDISHIQGSDVVA 432 Query: 398 CMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFH----- 452 +VV + K++YRKF L + D A + V+ RRF + +K Sbjct: 433 SLVVFEDGLPRKSEYRKFALREAATEG--DVASIAEVVRRRFYRYLKETAENAAETTETA 490 Query: 453 ---------------------PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENR 491 + F P+++++DG Q +AA VL +L + + Sbjct: 491 DETGEEAGDEAIQPVRAGIDPETGRPRKFAYPPNLLVVDGAGPQATAAADVLAELGITD- 549 Query: 492 ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR-K 550 I ++ +AK + E + + + ++L L+ +QRLRDEAHRFAI HR++R K Sbjct: 550 IAVVGLAKRLE-----EVWLPGEPDPMILPRTSDALFLLQRLRDEAHRFAIRYHREKRAK 604 Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 + S LD + G+G R+ L++ FG+VK + ++ E + ++ G ++ A + Sbjct: 605 RMQASELDSVPGLGQARRTALIKHFGSVKKLKQARVEEIEAVPGFGRRTAEAVVAALAGE 664 Query: 611 TSHTP 615 T P Sbjct: 665 TGSAP 669 >gi|153001116|ref|YP_001366797.1| excinuclease ABC subunit C [Shewanella baltica OS185] gi|189038089|sp|A6WPJ5|UVRC_SHEB8 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|151365734|gb|ABS08734.1| excinuclease ABC, C subunit [Shewanella baltica OS185] Length = 609 Score = 521 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 195/611 (31%), Positives = 325/611 (53%), Gaps = 28/611 (4%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 GVY+M D+ V+YVGKA +L+KR+ SY N + ++S I++I T+T +E Sbjct: 16 SSAGVYRMYDVKNDVIYVGKAKDLKKRLTSYFRKNLANVKTQALVSHIHHIDVTLTHSET 75 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 +ALLLE + IK+ P++N+LLRDDKS+PYIL++ +H+ P L HR +G YFGP+ + Sbjct: 76 DALLLENDYIKQYMPKYNVLLRDDKSYPYILLS-QHEHPRLAYHRGPQREKGHYFGPYPN 134 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 AV ++++ +Q+ F +R C D ++ R+RPCL +Q+ RCS PC G++S+ Y E V A Sbjct: 135 GGAVRESLHLMQKLFPIRQCDDLYYKSRSRPCLQYQLSRCSAPCVGKVSNADYDEQVKLA 194 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCF 245 FL G + + + M A ++ YE A RD++ AL + + N MD Sbjct: 195 SLFLKGKDQQVISALVDKMELAAERQAYEQAARFRDQIMALRKVAEQQEVSNNKGDMDVI 254 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPE 301 ++++ +AC F G+ G+ +++ +++ ++L F+ QFY + + P+ Sbjct: 255 GVHYSSGIACFHLLFIREGKIFGSRSYYPSVPAQTDMDEVLRSFILQFYLNADIQRTIPK 314 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 +++S EE LE + + K I + ++ + A+ NA + +LS + + Sbjct: 315 EVVISHNFEELHELEAAVSEALDKKFSIKTNVRADRASFLRLAVTNATNAVVTRLSHKNT 374 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 + + L +R+E +D SH MG S V VV G K +YR++N+ Sbjct: 375 VEQRFVLLEEILELSTPIQRMECFDISHTMGESTVASCVVFNREGPHKGEYRRYNIEG-- 432 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 + DD A M+ + RRF ++ + PD++ +DGG GQL AQ Sbjct: 433 ITPGDDYAAMKQAVSRRFDKIEAGGK---------------IPDILFIDGGLGQLRIAQK 477 Query: 482 VLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAH 538 ++ + ++++ +I +AKG R G+E + E + L P L+ IQ +RDE+H Sbjct: 478 IVDEKFVHLDKAPQLIGVAKGEGRKPGLETLILGDTETSFSLEGDSPALHLIQHIRDESH 537 Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR RR+K S L+ I GIGP R++ LLQ G ++ + +S L + GIS Sbjct: 538 RFAITGHRNRRQKTRNTSTLESIPGIGPKRRKALLQHLGGLQEVKGASVAELVKVPGISI 597 Query: 598 KIACKIYNHFH 608 ++A I++ Sbjct: 598 EMAQTIHDALR 608 >gi|289705482|ref|ZP_06501874.1| excinuclease ABC, C subunit [Micrococcus luteus SK58] gi|289557711|gb|EFD51010.1| excinuclease ABC, C subunit [Micrococcus luteus SK58] Length = 641 Score = 521 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 194/634 (30%), Positives = 313/634 (49%), Gaps = 34/634 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTVT 63 ++ PGVY+ D GRV+YVGKA NL+ R+ SY + M+ + +TV Sbjct: 13 EISTSPGVYRFRDADGRVVYVGKAKNLRARLNSYFQDPARLATKTRTMVFTAAAVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E+EAL LE IK +PRFNI+ RDDKS+PY+ +T + P + R YFG Sbjct: 73 GSELEALQLEYTWIKEYRPRFNIMYRDDKSYPYLAVTMNEQFPRVQVMRGDRKPGVKYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180 PF A+ +T++ + R F +R+C+ VF+ + RPCLL I +CS PC G IS + Sbjct: 133 PFHPAKAIRETVDLMLRVFPVRTCSAGVFKRARAQDRPCLLGYIGKCSAPCVGRISPADH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + F++G + ++ + M +A + YE A RD +AAL + N + Sbjct: 193 RALAQDFCDFMAGDANRFIGELEKAMARAVEELRYEDAARLRDDIAALRRVFERNAVVLP 252 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D F+L+ ++ +Q G+ RG + ++ + +++++ L+Q Y D Sbjct: 253 ENTEADIFALHADELEVAVQVFHVRQGRIRGQRGWVMERVEDVAEPEMVAHLLQQVYGDL 312 Query: 298 P----CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 P IL+ E ++ + L G +V + VP++G K ++E NA + Sbjct: 313 EGSERIPHEILVPVEPDDAAQLTEWLSGLRGSRVAVRVPRRGSKADLMETVRENAEMALK 372 Query: 354 QKLSTE----ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 S + L++ + + RIE YD SH G + VG MVV+ + K Sbjct: 373 LHKSRRSGDLTTRSAALRELQEALEITEPLLRIECYDISHSQGTNVVGSMVVMEDGLPKK 432 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEEN-------LNFHPKKQEYSFPS 462 YR+FN+ +DD A +R VL RRF++L K + ++ F Sbjct: 433 KDYRRFNVTGE--AARDDTASLRDVLRRRFARLAKERAEGAPLSGQVEGDDQESGRRFAY 490 Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522 P +V++DGG Q++AA VL++L +++ + ++ +AK + E + +VL Sbjct: 491 PPSLVVVDGGPPQVAAAAAVLEELGLDD-LPVVGLAKRLE-----EVWLPGDEFPVVLPR 544 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMI 581 LY +QR+RDE+HRFAI HR RR KA S LD I G+GP ++ LL FG+V I Sbjct: 545 TSEGLYLLQRIRDESHRFAIAGHRSRRSKAMTVSALDGIPGLGPAKRTALLNHFGSVAEI 604 Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615 + + L + GI ++A ++ T+ TP Sbjct: 605 RAAGVDRLTEVAGIGPRLAEAVHTAL---TADTP 635 >gi|282862018|ref|ZP_06271081.1| excinuclease ABC, C subunit [Streptomyces sp. ACTE] gi|282563043|gb|EFB68582.1| excinuclease ABC, C subunit [Streptomyces sp. ACTE] Length = 697 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 180/663 (27%), Positives = 315/663 (47%), Gaps = 71/663 (10%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 Q+P+ PGVY+ D RV+YVGKA NL++R+ +Y R M++ ++ + Sbjct: 10 KPGQIPDSPGVYKFRDEHRRVIYVGKAKNLRQRLANYFQDLAGLHPRTRTMVTTAASVEW 69 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TEVEAL LE + IK PRFN+ RDDKS+PY+ +T + P + R + Sbjct: 70 TVVSTEVEALQLEYSWIKEFDPRFNVKYRDDKSYPYLAVTLNEEFPRVQVMRGAKKKGVR 129 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP+ A+ +T++ + R F +R+C+ VF++ RPCLL I +CS PC G ++ Sbjct: 130 YFGPYGHAWAIRETVDLMLRVFPVRTCSAGVFKNAERTGRPCLLGYIGKCSAPCVGRVTP 189 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 +++ + + F++G ++ ++M +A + +YE A RD AL + Sbjct: 190 QEHRDLAEDFCDFMAGRTGTYIRRLEKDMTRAAEEMEYERAARLRDDAEALKRAMEKSAV 249 Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D ++ ++ A +Q G+ RG + A ++ + L+Q Y Sbjct: 250 VLADATDADLIAVAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEAVDTAGLVEHALQQLY 309 Query: 295 TDKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 ++ P+ +L+ E+T + + G V + +P++G+K+ ++ NA ++ Sbjct: 310 GEESGDAVPKEVLVPALPEDTEAVSQWLAGRRGSHVSLRIPQRGDKKDLMVTVQRNAQQA 369 Query: 352 HTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 + S L++ + L P R+E +D SH+ G V MVV + Sbjct: 370 LGLHKTKRASDLTTRSRALEEIAEALGLDTAPLRVECFDISHLQGDDVVASMVVFEDGLA 429 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE-------------------- 447 K++YR+F + + QDD M V+ RRF + ++ +E Sbjct: 430 RKSEYRRFQIKG--FEGQDDVRSMHEVIGRRFKRHLQEKERTGEWEGASAASGPVPGPAP 487 Query: 448 ----------------------------NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + + + F P +V++DGG+ Q++AA Sbjct: 488 SGPVPAPAAAFPGSVPAGPQDAPQDAPQDGSREEDGRPRRFAYPPQLVVVDGGQPQVAAA 547 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 + L +L +++ I + +AK + E + + +VL LY +QR+RDEAHR Sbjct: 548 KRALDELGIDD-IAVCGLAKRLE-----EVWLPDDDDPVVLPRSSEGLYLLQRIRDEAHR 601 Query: 540 FAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAIT R +R K SPLD+I G+G RK+ L++ FG+VK + +++ E + + GI ++ Sbjct: 602 FAITYQRAKRAKRIRSSPLDDIAGLGETRKQALIKHFGSVKRLRQATIEEICEVPGIGRR 661 Query: 599 IAC 601 A Sbjct: 662 TAE 664 >gi|262202286|ref|YP_003273494.1| excinuclease ABC subunit C [Gordonia bronchialis DSM 43247] gi|262085633|gb|ACY21601.1| excinuclease ABC, C subunit [Gordonia bronchialis DSM 43247] Length = 671 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 182/654 (27%), Positives = 300/654 (45%), Gaps = 51/654 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA +L+ R+ SY + R M++ ++ +TV Sbjct: 13 TIPTEPGVYRFRDAHGRVIYVGKAKSLRSRLTSYFADIASLHPRTRQMVTTAASVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE N IK PRFN+ RDDKS+P + +T + P L+ +R YFG Sbjct: 73 GTEVEALQLEYNWIKEFDPRFNVRYRDDKSYPMLAVTLNEEYPRLFVYRGPRRRGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F R+C+ VF+ RPCLL I +C+ PC G +S+E++ Sbjct: 133 PYSHAWAIRETVDLLTRVFPARTCSAGVFKRHRQIDRPCLLGYIDKCAAPCVGRVSAEQH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E V + FL+G + ++ R M+ A + D+E A RD + A+ + Sbjct: 193 REIVDDFCDFLAGRTDQMIRRMEREMSAAATELDFERAARLRDDIGAMRRAMEKQAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D + + +Q G+ RG + ++ + ++ FL QFY + Sbjct: 253 DGTDADVVAFAGDDLEVSVQIFHVRDGRVRGQRGWVVERSDNGSVGDLVGDFLTQFYGQQ 312 Query: 298 -----------------PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKI 340 P +++ E + + LE + G +V++ VP++G+K+ + Sbjct: 313 VDLDATVEIGAGRARGDAVPREVMVPELPSDAAELEDWLSELRGSRVRLRVPQRGDKKAL 372 Query: 341 IEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAV 396 + NA + Q + L + + L P RIE D SH+ G V Sbjct: 373 FDTVGRNASEALAQHKLRRAGDLTTRSAALTELQESLGLDQAPLRIECVDISHVQGTDVV 432 Query: 397 GCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLNFH--- 452 +VV + K+ YR +++ DD A + V RRF + ++ Sbjct: 433 ASLVVFEDGLPRKSDYRHYSIRHAAGDGHSDDVASIAEVTRRRFLRHRADQLPAPPPMES 492 Query: 453 ------------PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500 F P++ ++DGG Q+ AA VL +L + + +++I +AK Sbjct: 493 GPAPTGTPEADVAPPVPKKFAYPPNLFVVDGGAPQVHAAAAVLDELGITD-VSVIGLAKR 551 Query: 501 PKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDE 559 + E + E ++L L+ +QR+RDEAHRFAIT HR +R K S LD Sbjct: 552 LE-----EVWTPGDDEPIILPRAGEALFLLQRVRDEAHRFAITFHRNKRSKRMTESVLDG 606 Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 + G+G RK L+ FG+V + +S E ++ + GI A + ++ Sbjct: 607 VPGLGRTRKTALVTHFGSVARLREASLEDISGVPGIGMATARAVQAALGEDGRD 660 >gi|17545790|ref|NP_519192.1| excinuclease ABC subunit C [Ralstonia solanacearum GMI1000] gi|81505682|sp|Q8Y0H3|UVRC_RALSO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|17428084|emb|CAD14773.1| probable excinuclease abc subunit c (sos response dna repair protein) [Ralstonia solanacearum GMI1000] Length = 654 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 212/641 (33%), Positives = 321/641 (50%), Gaps = 52/641 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P PGVY+ D G VLYVGKA +L+KR+ SY + RI M+++I +I TV Sbjct: 29 RLPSLPGVYRYFDAQGSVLYVGKARDLKKRVSSYFTKTLLSPRIAMMVAKIAHIETTVVR 88 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T +H P + +R ++ + YFGP Sbjct: 89 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-QHAYPRMAYYRGATDRKHQYFGP 147 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV +++ LQ+ F LR+C D+VF +RTRPCLL QI RC+ PC IS+E Y V Sbjct: 148 FPSAHAVRESMQILQKVFQLRTCEDTVFNNRTRPCLLHQIHRCTAPCVQAISAEDYARDV 207 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS----IYN 240 A FL G + + + M + ++E A RD++ ALS + + Sbjct: 208 ANAAGFLLGRQDEVMQTLQDKMQRHAAALEFEQAATVRDQIGALSTVLTRQSVEEVGQAS 267 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT------------------------ 276 +D ++ AC+ G++ G +F Sbjct: 268 DIDILAVAIKGGHACVNLAMVRGGRHLGDKAYFPTHVEEGAAIVGVDVEADVPEGAETQP 327 Query: 277 ----DSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVP 332 D E IL F+ Q Y D+ P +++S L+E + G +V + Sbjct: 328 EPARDPERMARDILEAFVAQHYLDQFVPPVLVVSHPIRAAGLIEALAAQA-GRRVSVVRQ 386 Query: 333 KQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP---KRIEIYDNSH 389 QG +R +E A A S ++LS + S Q + + + R+E +D SH Sbjct: 387 PQGARRAWLEMAEKGAELSLARRLSEQGSQQARTRALAETIGVDLEDLAALRVECFDISH 446 Query: 390 IMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL 449 G + VV + +YR++N+ + DD A MR VL RR+ ++++ Sbjct: 447 TAGEATQASCVVFHSHAMQNGEYRRYNIQD--IIPGDDYAAMRQVLTRRYQKVVEQAAE- 503 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 P P VV++DGGKGQ+ A+ V ++L ++ + ++ +AKG R G+E Sbjct: 504 ---------DAPDMPRVVLIDGGKGQVEVARQVFEELGLDIGL-LVGVAKGEGRKVGLET 553 Query: 510 FFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567 G L L L + ++RDEAHRFAIT R +R KA S L+EI GIG R Sbjct: 554 LVFADGRPSLELGQGSAALMLVAQIRDEAHRFAITGMRAKRAKARNTSRLEEIEGIGAKR 613 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LL FG ++ + +S E LA++EGIS+ +A +IY H Sbjct: 614 RQRLLARFGGLRGVMAASVEELATVEGISQTLAEEIYRQLH 654 >gi|21231559|ref|NP_637476.1| excinuclease ABC subunit C [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768321|ref|YP_243083.1| excinuclease ABC subunit C [Xanthomonas campestris pv. campestris str. 8004] gi|81305705|sp|Q4UV60|UVRC_XANC8 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|81793864|sp|Q8P8W9|UVRC_XANCP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|21113244|gb|AAM41400.1| excinuclease ABC subunit C [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573653|gb|AAY49063.1| excinuclease ABC subunit C [Xanthomonas campestris pv. campestris str. 8004] Length = 618 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 229/607 (37%), Positives = 341/607 (56%), Gaps = 21/607 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++ PGVY+M +LYVGKA L+KR+ SY + R+T M+SQ+ + TVT Sbjct: 17 RLSTAPGVYRMYAADDSLLYVGKAGALRKRVGSYFNGTPKNARLTSMLSQVARMDVTVTR 76 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE +IK L PR+N+ LRDDKS+PY+L+T + P + HR + G YFGP Sbjct: 77 SEAEALLLENQLIKSLSPRYNVSLRDDKSYPYVLLT-REDWPRIALHRGPRAVNGRYFGP 135 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 +A V AV +T+N + + F LRSC DSVFR+R+RPCL +QI RCS PC ++++ Y E V Sbjct: 136 YAGVTAVRETLNLMHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSAPCVDLVAAQDYQEAV 195 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242 A FL G + L E+I +M QA+ ++E A RD L++L +QN + Sbjct: 196 RRATMFLEGKSDQLGEEIMHSMQQASEALEFERAARLRDLLSSLRSMQNRQYVDGRAADL 255 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D + + AC+ F G+N GT +FF KT+ E + +IL+ F+ Q+Y + P Sbjct: 256 DVLACATQSSQACVLLLSFRDGRNLGTRSFFPKTNGEDSAEEILAAFVSQYYAEHAPPRE 315 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 ILL E + L+E + +KV + +GE+ + A NA + +L+++ + Sbjct: 316 ILLDREIPDAELIEAALSAAAEHKVALKWNVRGERAGYLLLASRNAQLTLVTELTSQSAQ 375 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 + + L KR+E +D SH MG + V VV +G V+ QYR+FN+ + + Sbjct: 376 HARSEALREMLGLAEQVKRVECFDISHTMGEATVASCVVFDASGPVRGQYRRFNI--SGI 433 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD A MR +ERRF + ++ PDV+++DGG GQL+ AQ Sbjct: 434 TPGDDYAAMRQAIERRFRRAVEEN--------------GVLPDVLLIDGGAGQLAQAQAA 479 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 L L +EN + ++ +AKG +R AG E + G L P L FIQ++RDEAHRFAI Sbjct: 480 LADLGIEN-VLLVGVAKGEERRAGHEALILADGRELRPGAASPALQFIQQVRDEAHRFAI 538 Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR+KA S L++I GIGP R+ LL+ FG + + + +A +EG++ +A Sbjct: 539 TGHRGRRQKARMTSKLEDIPGIGPRRRASLLKHFGGLVGLKAAGEAEIARVEGVNAALAA 598 Query: 602 KIYNHFH 608 +IY + H Sbjct: 599 RIYANLH 605 >gi|126666396|ref|ZP_01737375.1| excinuclease ABC subunit C [Marinobacter sp. ELB17] gi|126629197|gb|EAZ99815.1| excinuclease ABC subunit C [Marinobacter sp. ELB17] Length = 588 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 216/605 (35%), Positives = 330/605 (54%), Gaps = 26/605 (4%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D AG+VLYVGKA NL+ R+ SY + + ++++I +I T+T +E EALLLE Sbjct: 1 MYDAAGKVLYVGKARNLKNRVSSYFRNTGLAPKTQALVAKICSIEVTITGSETEALLLEQ 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI-QGSYFGPFASVDAVEK 133 N+IK L+P +NILLRDDKS+PYI ++ P+L R + G++FGPF S AV++ Sbjct: 61 NLIKSLRPPYNILLRDDKSYPYIYVSAHQDYPSLTFRRGRTKKGGGTWFGPFPSSGAVKE 120 Query: 134 TINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSG 193 ++N LQ+ F +RSC +S FR+R RPCL +QI RC+ PC IS E Y + + A FL G Sbjct: 121 SLNVLQKVFRIRSCNESYFRNRNRPCLQYQINRCTAPCVDYISPEDYQQDIRRAAMFLEG 180 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFSLYHNK 251 N + E + + M A + ++E A +RD++ L H+Q D ++ + Sbjct: 181 KNPVVIEDLMQAMEAAAAELNFEKAAAYRDQMNHLRHVQEQQSVDGEGGDADVIAITQDA 240 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLSE 307 + C+ G+ GT +F + E ++ ++L+ FL Q+Y T + P++IL+S Sbjct: 241 GIVCVVVIIVRGGRVLGTKDYFPRFIIEQSDGELLAAFLGQYYFAGDTRREIPQDILVSS 300 Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367 E E +LL + + +I +GE+R+ +E A NA ++ L+++ + L Sbjct: 301 EPEGMALLAEALSEAAKRDTRIRGNVRGERRRWLELAQTNARQTLLTHLASKETVYRRLL 360 Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427 L P R+E +D SH G + V VV ENG +K+ YR +N+ + DD Sbjct: 361 ALKDLLDLAETPARMECFDVSHSHGENTVASCVVFDENGPLKSDYRLYNIEG--ITGGDD 418 Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487 A MR VL RR+ +L+ E P +V +DGG GQL+ A+ V + L Sbjct: 419 YAAMRQVLTRRYKRLVAGE--------------GKRPSLVFIDGGIGQLNIAREVFESLE 464 Query: 488 VENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546 + + I +I +AKG R AGME+ G + P L+ IQ +RDE+HRFAIT HR Sbjct: 465 LTD-IPLIGVAKGAARRAGMEQLIDAVTGRVFRVPADSPGLHLIQHIRDESHRFAITGHR 523 Query: 547 KRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 RR KK S L+ I G+GP R+R L++ FG ++ + ++ + + I GISK +A IY Sbjct: 524 ARRDKKRRQSTLEGIEGVGPKRRRDLIRYFGGIQELLKAGIDEMIKIPGISKALAETIYA 583 Query: 606 HFHKN 610 H Sbjct: 584 ALHDE 588 >gi|315267977|gb|ADT94830.1| excinuclease ABC, C subunit [Shewanella baltica OS678] Length = 610 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 196/611 (32%), Positives = 325/611 (53%), Gaps = 28/611 (4%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 GVY+M D+ V+YVGKA +L+KR+ SY N + ++S I++I T+T +E Sbjct: 17 SSAGVYRMYDVKNDVIYVGKAKDLKKRLTSYFRKNLANVKTQALVSHIHHIDVTLTHSET 76 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 +ALLLE + IK+ P++N+LLRDDKS+PYIL++ +H+ P L HR +G YFGP+ + Sbjct: 77 DALLLENDYIKQYMPKYNVLLRDDKSYPYILLS-QHEHPRLAYHRGPQREKGHYFGPYPN 135 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 AV ++++ +Q+ F +R C D ++ R+RPCL +QI RCS PC G++S+ Y E V A Sbjct: 136 GGAVRESLHLMQKLFPIRQCDDLYYKSRSRPCLQYQISRCSAPCVGKVSNADYDEQVKLA 195 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCF 245 FL G + + + M A ++ YE A RD++ AL + + N MD Sbjct: 196 SLFLKGKDQQVISALVDKMELAAERQAYEQAARFRDQIMALRKVAEQQEVSNNKGDMDVI 255 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPE 301 ++++ +AC F G+ G+ +++ +++ ++L F+ QFY + + P+ Sbjct: 256 GVHYSSGIACFHLLFIREGKIFGSRSYYPSVPAQTDMDEVLRSFILQFYLNADIQRTIPK 315 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 +++S EE LE + + K I + ++ + A+ NA + +LS + + Sbjct: 316 EVVISHNFEELHELEAAISEALDKKFSIKTNVRADRASFLRLAVTNATNAVVTRLSHKNT 375 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 + + L +R+E +D SH MG S V VV G K +YR++N+ Sbjct: 376 VEQRFVLLEEILELSTPIQRMECFDISHTMGESTVASCVVFNREGPHKGEYRRYNIEG-- 433 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 + DD A M+ + RRF ++ + PD++ +DGG GQL AQ Sbjct: 434 ITPGDDYAAMKQAVSRRFDKIEAGGK---------------IPDILFIDGGLGQLRIAQK 478 Query: 482 VLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAH 538 ++ + ++++ +I +AKG R G+E + E + L P L+ IQ +RDE+H Sbjct: 479 IVDEKFVHLDKAPQLIGVAKGEGRKPGLETLILGDTETSFSLEGDSPALHLIQHIRDESH 538 Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR RR+K S L+ I GIGP R++ LLQ G ++ + +S L + GIS Sbjct: 539 RFAITGHRNRRQKTRNTSTLESIPGIGPKRRKALLQHLGGLQEVKGASVAELVKVPGISI 598 Query: 598 KIACKIYNHFH 608 ++A I++ Sbjct: 599 EMAQTIHDALR 609 >gi|160875788|ref|YP_001555104.1| excinuclease ABC subunit C [Shewanella baltica OS195] gi|189038090|sp|A9L582|UVRC_SHEB9 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|160861310|gb|ABX49844.1| excinuclease ABC, C subunit [Shewanella baltica OS195] Length = 609 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 196/611 (32%), Positives = 325/611 (53%), Gaps = 28/611 (4%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 GVY+M D+ V+YVGKA +L+KR+ SY N + ++S I++I T+T +E Sbjct: 16 SSAGVYRMYDVKNDVIYVGKAKDLKKRLTSYFRKNLANVKTQALVSHIHHIDVTLTHSET 75 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 +ALLLE + IK+ P++N+LLRDDKS+PYIL++ +H+ P L HR +G YFGP+ + Sbjct: 76 DALLLENDYIKQYMPKYNVLLRDDKSYPYILLS-QHEHPRLAYHRGPQREKGHYFGPYPN 134 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 AV ++++ +Q+ F +R C D ++ R+RPCL +QI RCS PC G++S+ Y E V A Sbjct: 135 GGAVRESLHLMQKLFPIRQCDDLYYKSRSRPCLQYQISRCSAPCVGKVSNADYDEQVKLA 194 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCF 245 FL G + + + M A ++ YE A RD++ AL + + N MD Sbjct: 195 SLFLKGKDQQVISALVDKMELAAERQAYEQAARFRDQIMALRKVAEQQEVSNNKGDMDVI 254 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPE 301 ++++ +AC F G+ G+ +++ +++ ++L F+ QFY + + P+ Sbjct: 255 GVHYSSGIACFHLLFIREGKIFGSRSYYPSVPAQTDMDEVLRSFILQFYLNADIQRTIPK 314 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 +++S EE LE + + K I + ++ + A+ NA + +LS + + Sbjct: 315 EVVISHNFEELHELEAAISEALDKKFSIKTNVRADRASFLRLAVTNATNAVVTRLSHKNT 374 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 + + L +R+E +D SH MG S V VV G K +YR++N+ Sbjct: 375 VEQRFVLLEEILELSTPIQRMECFDISHTMGESTVASCVVFNREGPHKGEYRRYNIEG-- 432 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 + DD A M+ + RRF ++ + PD++ +DGG GQL AQ Sbjct: 433 ITPGDDYAAMKQAVSRRFDKIEAGGK---------------IPDILFIDGGLGQLRIAQK 477 Query: 482 VLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAH 538 ++ + ++++ +I +AKG R G+E + E + L P L+ IQ +RDE+H Sbjct: 478 IVDEKFVHLDKAPQLIGVAKGEGRKPGLETLILGDTETSFSLEGDSPALHLIQHIRDESH 537 Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR RR+K S L+ I GIGP R++ LLQ G ++ + +S L + GIS Sbjct: 538 RFAITGHRNRRQKTRNTSTLESIPGIGPKRRKALLQHLGGLQEVKGASVAELVKVPGISI 597 Query: 598 KIACKIYNHFH 608 ++A I++ Sbjct: 598 EMAQTIHDALR 608 >gi|325917588|ref|ZP_08179788.1| Excinuclease ABC subunit C [Xanthomonas vesicatoria ATCC 35937] gi|325536222|gb|EGD08018.1| Excinuclease ABC subunit C [Xanthomonas vesicatoria ATCC 35937] Length = 618 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 231/607 (38%), Positives = 340/607 (56%), Gaps = 21/607 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+ PGVY+M +LYVGKA L+KR+ SY + R+T M+SQ+ + TVT Sbjct: 17 QLSTAPGVYRMYAADDTLLYVGKAGALRKRVGSYFNGTPKNARLTSMLSQVARMDVTVTR 76 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE +IK L PR+N+ LRDDKS+PY+L+T + P + HR +QG YFGP Sbjct: 77 SEAEALLLENQLIKSLSPRYNVSLRDDKSYPYVLLT-REDWPRIALHRGPRAVQGRYFGP 135 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + V V +T++ + + F LRSC DSVFR+R+RPCL +QI RCSGPC +++ Y E V Sbjct: 136 YTGVTGVRETLSLMHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSGPCVDLVAAPDYAESV 195 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242 A FL G + L E+I ++M QA+ ++E A RD L++L +QN + Sbjct: 196 RRATMFLEGKSDQLGEEIMQSMQQASEALEFERAARLRDLLSSLRGMQNRQYVDGRAADL 255 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D + AC+ F G+N GT +FF KT+ E + +IL+ F+ Q+Y + P Sbjct: 256 DVLACATQATQACVLLLSFRDGRNLGTRSFFPKTNGEDSADEILAAFVSQYYAEHAPPRE 315 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 ILL E E L+E + +KV + +GE+ + A NA + +L+++ + Sbjct: 316 ILLDREIPEAELIEAALSAAAEHKVALKWNVRGERAGYLLLATRNAQLTLVTELTSQSAQ 375 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 + + L KR+E +D SH MG + V VV +G V+ QYR+FN+ + + Sbjct: 376 HARSEALREMLGLAEQVKRVECFDISHTMGEATVASCVVFDASGPVRGQYRRFNI--SGI 433 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD A MR +ERRF + ++ PDV+++DGG GQL+ AQ Sbjct: 434 TPGDDYAAMRQAIERRFRRAVEEN--------------GVLPDVLLIDGGAGQLAQAQAA 479 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 L L VEN + ++ +AKG +R AG E + G L P L FIQ++RDEAHRFAI Sbjct: 480 LADLGVENVV-LVGVAKGEERRAGHEALIMADGRELRPGAASPALQFIQQVRDEAHRFAI 538 Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR+KA S L++I GIGP R+ LL+ FG + + + +A +EG++ +A Sbjct: 539 TGHRGRRQKARMTSKLEDIPGIGPRRRASLLKHFGGLVGLKAAGEAEIARVEGVNAALAA 598 Query: 602 KIYNHFH 608 +IY + H Sbjct: 599 RIYANLH 605 >gi|163751600|ref|ZP_02158821.1| excinuclease ABC subunit C [Shewanella benthica KT99] gi|161328512|gb|EDP99666.1| excinuclease ABC subunit C [Shewanella benthica KT99] Length = 609 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 204/616 (33%), Positives = 325/616 (52%), Gaps = 28/616 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D V+YVGKA +L+KR+ SY N + ++S I NI TV Sbjct: 11 LKSVSSSPGVYRMYDAEDVVIYVGKAKDLKKRLSSYFRKNLVHVKTQALVSHIANIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E +AL+LE + IK+ PR+N+LLRDDKS+PYIL++ HK P L HR S +G+YF Sbjct: 71 THSETDALILENDYIKQYMPRYNVLLRDDKSYPYILLS-HHKHPRLAYHRGSKRDKGTYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + AV ++++ +Q+ F +R C D ++ R+RPCL +QI RCS PC +ISSE+Y Sbjct: 130 GPYPNGGAVRESLHLMQKIFPIRQCDDLYYKSRSRPCLQYQIGRCSAPCVDKISSEEYEA 189 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYN 240 V A FL G N + ++ M +YE A +RD+++AL + + Sbjct: 190 QVKLASLFLKGKNQQVMVELVSKMEACAQSLEYEKAASYRDQISALRRVAEQQEVSGTSG 249 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD---- 296 MD ++ +AC F G+ G+ +++ ++ ++LS F+ QFY + Sbjct: 250 DMDVIGAHYASGVACFHLLFIRNGKIFGSRSYYPSVPDQTDMDEVLSAFMIQFYLNGDSQ 309 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 + P+ ILLS+ ++ LE + KV+I + E+ + A+ NA + +L Sbjct: 310 RTVPKEILLSQSFDDLPQLEKAIQTALDKKVEIKTNVRSERANFLRLAVTNATNAVNTRL 369 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 S + + + + + +R+E +D SH MG S V VV G K YR +N Sbjct: 370 SHKNTVEQRFLLLEEALDMTTRVQRMECFDISHTMGESTVASCVVFNREGPNKADYRHYN 429 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + N + DD A M+ + RRF ++ K PD++ +DGG GQL Sbjct: 430 I--NGITPGDDYAAMKQAITRRFDKIDK---------------TGKIPDILFIDGGLGQL 472 Query: 477 SAAQGVLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRL 533 AQ ++ + +++ +I IAKG R G+E + E + + L+ IQ + Sbjct: 473 RIAQKIIDEKFAHLDTAPMLIGIAKGEGRKPGLETLIYGENELSFSIAADSGALHLIQHI 532 Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDE+HRFAIT HR +R+K S L+ I G+GP R++ LLQ G ++ + +S +A + Sbjct: 533 RDESHRFAITGHRNKRQKTRNTSTLESIAGVGPKRRKALLQFLGGLQEVKNASVAEMAKV 592 Query: 593 EGISKKIACKIYNHFH 608 GIS +A KI++ Sbjct: 593 PGISVDMAKKIHDSLR 608 >gi|145224297|ref|YP_001134975.1| excinuclease ABC subunit C [Mycobacterium gilvum PYR-GCK] gi|315444630|ref|YP_004077509.1| excinuclease ABC subunit C [Mycobacterium sp. Spyr1] gi|189038067|sp|A4TC09|UVRC_MYCGI RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|145216783|gb|ABP46187.1| Excinuclease ABC subunit C [Mycobacterium gilvum PYR-GCK] gi|315262933|gb|ADT99674.1| Excinuclease ABC subunit C [Mycobacterium sp. Spyr1] Length = 678 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 191/640 (29%), Positives = 305/640 (47%), Gaps = 43/640 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA +L+ R+ SY + R M+ +++ +TV Sbjct: 13 SIPVEPGVYRFRDPHGRVIYVGKAKSLRSRLNSYFADISGLAPRTRQMVMTASSVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE N IK PRFNI RDDKS+P + +T + P L +R YFG Sbjct: 73 GTEVEALQLEYNWIKEFDPRFNIRYRDDKSYPVLAVTLNEEYPRLKVYRGPRRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F R+C++ VF+ RPCLL I +CS PC G +S+E++ Sbjct: 133 PYSHAWAIRETVDLLTRVFPARTCSNGVFKRHSQIDRPCLLGYIDKCSAPCVGRVSAEQH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + V + FL+G L ++ + M A D+E A RD + A+ + Sbjct: 193 RQIVQDFCDFLAGKTDRLIREMEQQMTAAAEDLDFERAARLRDNIGAMRRAMEKQTVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT---DSESTNAQILSYFLRQFY 294 D + ++ A +Q G+ RG + ++ EST ++ FL QFY Sbjct: 253 DGTDADVVAFADDELEAAVQVFHVRGGRVRGQRGWVIEKSGEPGESTLEYLVEQFLTQFY 312 Query: 295 TD----------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKR 338 D P P+ +L+ E T LE + G +V + VP++G+KR Sbjct: 313 GDQAELGGASDAGGDEASNPVPKQVLVPVLPETTDELETWLSQLRGSRVALRVPQRGDKR 372 Query: 339 KIIEQALINAHRSHTQKLSTEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIMGCS 394 + E NA + Q L+ + L P RIE D SH+ G Sbjct: 373 ALAETVKRNAEGALNQHKLKRAGDFTARSAALQSIQENLGLQDAPLRIECIDISHVQGTD 432 Query: 395 AVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKN-EENLNFH 452 V +VV + K+ YR F + + DD A + V RRF + +++ +E Sbjct: 433 VVASLVVFEDGLPRKSDYRHFAIREAAGDGRSDDVASIAEVTRRRFHRHLRDMQEPGEMV 492 Query: 453 PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV 512 + + F P++ ++DGG Q++AAQ VL L + + + +I +AK + E + Sbjct: 493 AEGRSRRFAYPPNLFVVDGGAPQVNAAQAVLDDLGISD-VAVIGLAKRLE-----EVWVP 546 Query: 513 K----KGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLR 567 + ++ LY +QR+RDEAHRFAI+ HR +R K S LD + G+G R Sbjct: 547 NLDGTAPDPIIFPRNSDGLYLLQRVRDEAHRFAISYHRSKRSKRMTASALDSVRGLGEHR 606 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 ++ L+ FG++ + +++ E + + GI A + + Sbjct: 607 RKALVTHFGSLARLKQATVEEITEVPGIGAATARAVLDAL 646 >gi|166031032|ref|ZP_02233861.1| hypothetical protein DORFOR_00713 [Dorea formicigenerans ATCC 27755] gi|166029299|gb|EDR48056.1| hypothetical protein DORFOR_00713 [Dorea formicigenerans ATCC 27755] Length = 612 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 201/619 (32%), Positives = 333/619 (53%), Gaps = 25/619 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M D +++YVGKA +L+ R++ Y S+ N +I M++ I+ + Sbjct: 7 ELKKLPGKPGVYLMHDETDKIIYVGKAISLKNRVRQYFQSSRNKGAKIEQMVTHISRFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK +P++N +L DDK++P+I +T + P + R + Sbjct: 67 IVTDSELEALVLECNLIKEHRPKYNTMLMDDKAYPFIKVTVQEPFPRVMLARRVQKDKAK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV+ TI +++ +F+RSC + + + RPCL + I +C PC G IS E Sbjct: 127 YFGPYTSAGAVKATIELIRKLYFIRSCNRRLPKDIGKERPCLNYHIHQCKAPCQGYISKE 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235 +Y + V E FL+G + EK+ M +A+ ++E AI +R+ + ++ I Sbjct: 187 EYRKSVEEVLHFLNGNYDPILEKLKAQMEEASESLEFERAIEYRELINSVQKIAQKQKIT 246 Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D+ + D ++ + A +Q F G+ G F+LK + T A+ILS F++QFY Sbjct: 247 DTAGDDRDIVAVSKDLEDAVVQVFFIRNGRLIGRDHFYLKLVDKETKAEILSSFIKQFYA 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351 P P I+L EE + ++E ++ +KV + +PK+G K K++E A NA Sbjct: 307 GTPYIPGQIMLPEEIPDHEIIEEWLTRKKEHKVHLVIPKKGTKEKLVELAEKNARMVLTK 366 Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E +K+ L R+E YD S+ G +VG MVV + +N Sbjct: 367 DKERIKREEGRTIGAVKELQNLLGLT-GLHRMEAYDISNTNGFESVGSMVVYEKGKPKRN 425 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YRKF + VK +D A M VL RRF ++ +E ++ SF +PD++++D Sbjct: 426 DYRKFKIKG--VKGANDYASMNEVLTRRFGHGLREKEE-----GRELGSFTVFPDLILMD 478 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ++ A VL KLN++ I + + K + E + ++ I Sbjct: 479 GGKGQVNIALEVLDKLNLD--IPVCGMVKDDHHRTRGLYYH---NEEIPIDRNSEAFRLI 533 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DEAHRFAIT HR+ R + +S LD+I G+GP R++ L++ F ++ I ++ E L Sbjct: 534 TRIQDEAHRFAITFHRQLRSQGQVHSILDDIPGVGPARRKDLMKHFANIEAIKNATVEEL 593 Query: 590 ASIEGISKKIACKIYNHFH 608 S+ +++K A +Y+ FH Sbjct: 594 KSLPSMNEKSAKDVYDFFH 612 >gi|165975733|ref|YP_001651326.1| excinuclease ABC subunit C [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|229557976|sp|B0BT25|UVRC_ACTPJ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|165875834|gb|ABY68882.1| excinuclease ABC, subunit C [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 610 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 202/618 (32%), Positives = 331/618 (53%), Gaps = 33/618 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+M D ++YVGKA +L+KR+ SY S + + +++ I++I T+T Sbjct: 10 DVPHLPGVYRMYDAKNTIIYVGKAKDLKKRLSSYFRSQLASKKTEALVANIHHIETTITH 69 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N IK +P++N+LLRDDKS+PYIL+T KH+ P + R S + G YFGP Sbjct: 70 SETEALLLEHNYIKENQPKYNVLLRDDKSYPYILLT-KHQHPRITSFRGSKKVAGEYFGP 128 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183 + + AV +T+N LQ+ F +R C DS +++R+RPCL +QI RC PC S +Y Sbjct: 129 YPNAGAVRETLNLLQKLFPIRQCEDSYYKNRSRPCLQYQIGRCLAPCVESYYSQAEYDNQ 188 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240 V+ + FL G + + E + + M A + D+E+A RD++ ++ +Q + Sbjct: 189 VNLVRLFLQGKDGQVIEHLVQKMENAAQELDFEAAARFRDQIQSVRAVQEKQFVSNERLD 248 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296 +D S+ + +AC+ F G+ G ++F K + + +++ F+ QFY Sbjct: 249 DLDIISIAYQHGIACVHILFVRHGKVLGNRSYFPKVPNNTDLSELADTFVGQFYLQMNQH 308 Query: 297 KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P I++ + E +L ++ + +G+K + + A NA + T + Sbjct: 309 RTIPNQIIIDQPLSESAALADVLSEQAGHKVSIADKNIRGDKSRYLALAKTNAEAALTLQ 368 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L + + L I R+E +D SH MG V VV ENG +K+ YR+F Sbjct: 369 LKQDTHIRQRYDSLKTLLNLAEIK-RMECFDISHTMGNQTVASCVVFDENGPLKSDYRRF 427 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M L +R+S+ ++ E+ PD++ +DGGKGQ Sbjct: 428 NIEG--ITGGDDYAAMEQALLKRYSRHLEEEK---------------IPDIIFIDGGKGQ 470 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQ 531 L+ A LNV + + +I +AKG +R AG+E + K + + L P L+ IQ Sbjct: 471 LNRALETFASLNVSWDKRKPLLIGVAKGVERKAGLETLLISKWDKEIHLPPDSPALHLIQ 530 Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AIT HRK+R+KA S L+ I G+G R++ LL+ G ++ + ++ E + Sbjct: 531 HIRDESHNHAITGHRKKRQKAFTESGLESIAGVGAKRRQALLKYLGGMQGVKAATLEEIQ 590 Query: 591 SIEGISKKIACKIYNHFH 608 S+ GISK++A I++ Sbjct: 591 SVPGISKQLAEVIFDTLQ 608 >gi|298243695|ref|ZP_06967502.1| excinuclease ABC, C subunit [Ktedonobacter racemifer DSM 44963] gi|297556749|gb|EFH90613.1| excinuclease ABC, C subunit [Ktedonobacter racemifer DSM 44963] Length = 690 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 209/668 (31%), Positives = 329/668 (49%), Gaps = 66/668 (9%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTVT 63 +P PG+Y M D G ++YVGKA +L R++SY S +H+ + M+++I +I F V Sbjct: 11 SLPHKPGIYLMKDGEGTIIYVGKAISLYNRVRSYFQESTDHSPKNRSMVAKIEDIEFLVV 70 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 EVEAL+LE+N IK+ +P++N+LLRDDKS+PYI ++ P +Y+ R YFG Sbjct: 71 RNEVEALVLESNYIKQYRPKYNVLLRDDKSYPYIKVSLNEDFPRVYRVRSFQRDGNRYFG 130 Query: 124 PFASVDAVEKTINSLQRTFFLRSCAD----------------SVFRHRTRPCLLFQIKRC 167 P+ + AV+ T++ L + F R+C + RPC + I RC Sbjct: 131 PYTNSGAVDATLDLLNKLFAFRTCRYDASVWAPPRTGEPHAGWKQKLLNRPCTQYYIHRC 190 Query: 168 SGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAA 227 PC G S E+Y + + + FL G + + + + R M +A ++E A RDR+ A Sbjct: 191 IAPCVGYASREEYDKIIQQVILFLEGKHDEVLKDLQRRMEEAAESLNFEEAARIRDRIKA 250 Query: 228 LSHIQNHNDSIY----NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNA 283 + + I + D +L + C Q FF G+ G F L+ +S + Sbjct: 251 VERVLEKQRIINTEGQDDQDVVALASGDDETCAQVFFFRSGKLIGREYFILQGTRDSAPS 310 Query: 284 QILSYFLRQFYTDKP-CPENILLSEEAEETSLLEISFFKQYGYKV--------KITVPKQ 334 +I+S FL+QFY P P IL+ E ++ +L+ ++ I PK+ Sbjct: 311 EIMSSFLQQFYESSPHIPAEILVEAEPDDREVLQSWLKEKRRGTSAAGRSASVTINEPKR 370 Query: 335 GEKRKIIEQALINAHRS----HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHI 390 GEK +++E NA + L+ QM L++ + L P+RIE YD S+ Sbjct: 371 GEKLRLVEMVHNNAKEVLEQQRIKWLTDSQKTQMALEELQEALNLISAPQRIECYDISNT 430 Query: 391 MGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLN 450 G ++VG M V ++YR+F + V+ +D A + VL RRF + +E Sbjct: 431 QGSNSVGAMAVFEGGKPKNSEYRRFKIKT--VEGANDVASHQEVLRRRFRKAAALQEATL 488 Query: 451 FHPKKQE-----------------------YSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487 + PD++++DGGK QL+AA VL++L Sbjct: 489 ERESAAAVDRVSQRANGEEETGGESEQNALQHNWAMPDLILIDGGKPQLNAALQVLQELE 548 Query: 488 VENRITIISIAKGP---KRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAIT 543 ++ I I+ +AK RS E+ + E ++L LY +QR+RDEAHRF IT Sbjct: 549 MD--IPIVGVAKEEGSHTRSTTQEELHIPGTLEPILLPRNSQGLYLVQRIRDEAHRFGIT 606 Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HRK R S LDEI GIGP RK+ L++ FG+V+ IS +S + L +I+G+++ A K Sbjct: 607 YHRKLRTNRTFKSLLDEIPGIGPKRKQALMKHFGSVRAISTASLDELTAIDGMTRDSAEK 666 Query: 603 IYNHFHKN 610 + +N Sbjct: 667 VKEFIGRN 674 >gi|217972960|ref|YP_002357711.1| excinuclease ABC subunit C [Shewanella baltica OS223] gi|217498095|gb|ACK46288.1| excinuclease ABC, C subunit [Shewanella baltica OS223] Length = 610 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 195/611 (31%), Positives = 325/611 (53%), Gaps = 28/611 (4%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 GVY+M D+ V+YVGKA +L+KR+ SY N + ++S I++I T+T +E Sbjct: 17 SSAGVYRMYDVKNDVIYVGKAKDLKKRLTSYFRKNLANVKTQALVSHIHHIDVTLTHSET 76 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 +ALLLE + IK+ P++N+LLRDDKS+PYIL++ +H+ P L HR +G YFGP+ + Sbjct: 77 DALLLENDYIKQYMPKYNVLLRDDKSYPYILLS-QHEHPRLAYHRGPQREKGHYFGPYPN 135 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 AV ++++ +Q+ F +R C D ++ R+RPCL +Q+ RCS PC G++S+ Y E V A Sbjct: 136 GGAVRESLHLMQKLFPIRQCDDLYYKSRSRPCLQYQLSRCSAPCVGKVSNADYDEQVKLA 195 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCF 245 FL G + + + M A ++ YE A RD++ AL + + N MD Sbjct: 196 SLFLKGKDQQVISALVDKMELAAERQAYEQAARFRDQIMALRKVAEQQEVSNNKGDMDVI 255 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPE 301 ++++ +AC F G+ G+ +++ +++ ++L F+ QFY + + P+ Sbjct: 256 GVHYSSGIACFHLLFIREGKIFGSRSYYPSVPAQTDMDEVLRSFILQFYLNADIQRTIPK 315 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 +++S EE LE + + K I + ++ + A+ NA + +LS + + Sbjct: 316 EVVISHNFEELHELEAAISEALDKKFSIKTNVRADRASFLRLAVTNATNAVITRLSHKNT 375 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 + + L +R+E +D SH MG S V VV G K +YR++N+ Sbjct: 376 VEQRFVLLEEILELSAPIQRMECFDISHTMGESTVASCVVFNREGPHKGEYRRYNIEG-- 433 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 + DD A M+ + RRF ++ + PD++ +DGG GQL AQ Sbjct: 434 ITPGDDYAAMKQAVSRRFDKIEAGGK---------------IPDILFIDGGLGQLRIAQK 478 Query: 482 VLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAH 538 ++ + ++++ +I +AKG R G+E + E + L P L+ IQ +RDE+H Sbjct: 479 IVDEKFVHLDKAPQLIGVAKGEGRKPGLETLILGDTETSFSLEGDSPALHLIQHIRDESH 538 Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR RR+K S L+ I GIGP R++ LLQ G ++ + +S L + GIS Sbjct: 539 RFAITGHRNRRQKTRNTSTLESIPGIGPKRRKALLQHLGGLQEVKGASVAELVKVPGISI 598 Query: 598 KIACKIYNHFH 608 ++A I++ Sbjct: 599 EMAQTIHDALR 609 >gi|253990046|ref|YP_003041402.1| excinuclease ABC subunit C [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781496|emb|CAQ84659.1| uvrabc system protein c (protein uvrc) (excinuclease abc subunit c) [Photorhabdus asymbiotica] Length = 610 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 214/618 (34%), Positives = 337/618 (54%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D +G V+YVGKA +L+KR+ SY + + + ++ I I TV Sbjct: 11 LKTVTSQPGVYRMYDTSGTVIYVGKAKDLKKRLSSYFRARVASRKTESLVKNITQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+PYI ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLHQPRYNVLLRDDKSYPYIFLSTD-NHPRLAIHRGAKHSKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +++ LQ+ F +R C DSV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNSHAVRESLILLQKLFPIRQCEDSVYRNRSRPCLQYQIGRCLGPCVKGLVSEEEYQ 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IY 239 + V + FLSG + + ++ M +A+ + +E A +RD++ A+ + Sbjct: 190 QQVDYIRLFLSGKDQQVLTQLINRMEEASQQLKFEDAAKYRDQILAVRQVTERQFVSGTD 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295 + +D S+ +AC+ F G+ G+ +++ K + + +I+ FL QFY Sbjct: 250 DDLDVISIAFEAGMACLHVLFIRQGKVLGSRSYYPKIPTGTELNEIVQTFLGQFYLQGSQ 309 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ P ILL +E +L S + G K+ I +G++ + ++ A NA + + Sbjct: 310 NRTLPSEILLDFALQEKEILSDSLSEISGRKIHIQTRPRGDRARYLKLARTNAATALVTR 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L+ K L +R+E +D SH MG V VV NG ++++YR++ Sbjct: 370 LSQQSTIHQRLESLAKLVNLA-KIQRMECFDISHTMGEQTVASCVVFDSNGPLRSEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + + DD A M VL RR+ + + + PD++ +DGGKGQ Sbjct: 429 NI--SGITPGDDYAAMNQVLRRRYGKALDESK---------------IPDIIFIDGGKGQ 471 Query: 476 LSAAQGVLKKLNVE---NRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQ 531 L+ A V + L VE R +IS+AKG R AG+E F G E++ L P L+ IQ Sbjct: 472 LTQAINVFQSLEVEWDKTRPQLISVAKGSDRKAGLETLFFATGSESMALPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AIT HR+RR K S L+ I G+GP R+++LL+ G ++ + ++ E +A Sbjct: 532 HIRDESHHHAITGHRQRRTKVKNTSILESIEGVGPKRRQMLLKYMGGLQPLRNANVEEIA 591 Query: 591 SIEGISKKIACKIYNHFH 608 I IS +A KI+N Sbjct: 592 KIPTISYALAEKIHNALK 609 >gi|147679071|ref|YP_001213286.1| excinuclease ABC subunit C [Pelotomaculum thermopropionicum SI] gi|146275168|dbj|BAF60917.1| nuclease subunit of the excinuclease complex [Pelotomaculum thermopropionicum SI] Length = 627 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 218/621 (35%), Positives = 333/621 (53%), Gaps = 22/621 (3%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIR 59 + + +P PGVY D AGRV+YVGKA +L+ R++SY + H +I MI +I+++ Sbjct: 11 LDLKALPAGPGVYLYRDAAGRVIYVGKAASLRNRVRSYFLPGSQHPPKIRSMIEKISDLE 70 Query: 60 FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG 119 VT TEVEAL+LE N+IK +PR+N L+DDKS+PYI +T P + R Sbjct: 71 VIVTDTEVEALILEQNLIKEHRPRYNAYLKDDKSYPYIKVTLGEDFPRVMLTRRHVKDGS 130 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 YFGP+ AV +T++ L++ F R+C R RPCL + IKRCSGPC G + EK Sbjct: 131 RYFGPYTRAGAVHETLSLLRKIFPFRTCKQKEPPLRERPCLNYHIKRCSGPCCGLVDREK 190 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y ++E FL G +L +A M +A ++E A RD+L A+ + I Sbjct: 191 YRAVINEVILFLEGRQEDLIRNLAARMEEAAANLEFEKAARLRDQLQAVREVVEKQKIIS 250 Query: 240 N---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 D ++ + A + F G+ G F LK + A +++ F++Q+YT Sbjct: 251 GGFEDQDVAAVAREGDEAWVAVFFIRGGKLIGREQFVLKGTEGLSGADVIAAFIKQYYTG 310 Query: 297 KPCPENILLSEEA--EETSLLEISFFKQYGYKVKITVPKQGEKRKIIE----QALINAHR 350 +L E EE +++E ++ G +V + VP++GEK+K+++ AL+ + Sbjct: 311 AEFVPAEILLPEEAGEEKAVIEKWLSEKRGARVLLKVPRRGEKKKLVDLAAKNALLALEQ 370 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + ++ + L ++ L P R+E YD S+ G +V MVV E Sbjct: 371 ARLEEAARRDDEAEALAGLARELGLEGPPGRVECYDVSNTQGAYSVASMVVFEEGRPAAG 430 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQ-EYSFPSWPDVVIL 469 QYR+F + V+ +D A ++ VL RRF++ + E L + F PD+VI+ Sbjct: 431 QYRRFKIRT--VEGPNDFASIQEVLRRRFARAREERELLAAGRIGSCQAKFHRLPDLVIV 488 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILY 528 DGGKGQLSAA+ +++L RI +AK E F + + E + L P L Sbjct: 489 DGGKGQLSAARQAMRELGFS-RIPAFGLAKEE------ELLFAESRPEPIALPADSPALR 541 Query: 529 FIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 +QRLRDEAHRFA+ HR R KA S LDE+ GIG +R+R LL++FG+V I +++PE Sbjct: 542 LVQRLRDEAHRFALAYHRSLRGKAGLRSLLDEVEGIGEVRRRALLKAFGSVAEIEKATPE 601 Query: 588 TLASIEGISKKIACKIYNHFH 608 LA+++G++KK A +Y FH Sbjct: 602 QLAAVKGMNKKAARAVYEFFH 622 >gi|324999180|ref|ZP_08120292.1| Excinuclease ABC subunit C [Pseudonocardia sp. P1] Length = 665 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 187/647 (28%), Positives = 311/647 (48%), Gaps = 51/647 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +PE PGVY+ D GRV+YVGKA +L++R+ SY + R M++ + + +TV Sbjct: 13 TIPESPGVYRFSDPRGRVIYVGKAKSLRQRLNSYFADLSGLHPRTRQMVTTASKVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE N IK PRFN+ RDDK++P + +T + P L+ +R YFG Sbjct: 73 GTEVEALQLEYNWIKEYDPRFNVRYRDDKTYPVLAVTMNEEYPRLHVYRGPRRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P+A A+ +T++ L R F R+C+ VF+ RPCLL I +CS PC G++S++++ Sbjct: 133 PYAHAWAIRETLDLLLRVFPARTCSAGVFKRHGQIGRPCLLGYIDKCSAPCVGKVSADEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + V FLSG + ++ + M +A+ ++E A RD L AL + Sbjct: 193 RDIVEGFSDFLSGRTDRMVRRLEQEMAEASENLEFERAARMRDDLGALRRAMEKQAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD- 296 D + ++ A +Q G+ RG + + + Q++ F+ QFY + Sbjct: 253 DGTDADVVAFAEDELEAAVQIFHVRGGRVRGQRGWVIDKVEPTDTEQLVERFVSQFYGEQ 312 Query: 297 -----------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQAL 345 +P P+ IL+ E + LE G KV + V ++G+K+ + E Sbjct: 313 HALAGAADDAMQPVPKEILVPVLPAEGAALERWLSGLRGSKVSLRVAQRGDKKDLAETVA 372 Query: 346 INAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVV 401 NA + Q + L++ + L P RIE D SH+ G + V +VV Sbjct: 373 RNAKEAFAQHKLRRAGDLTARSAALQEIQENLELDQAPLRIECIDVSHVQGTNVVASLVV 432 Query: 402 VGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNF---------- 451 + K++YR+F + + D A + V+ RRF + + + Sbjct: 433 FEDGLARKSEYRRFEIKDASDQG--DVASIAEVVRRRFKRFLAETADEPEPTAGSGEVAP 490 Query: 452 ---------HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPK 502 + F P+++++DG K Q+ AA L +L + + + + +AK + Sbjct: 491 GDTVRTGIDPETGRPKKFAYPPNLLVVDGAKPQVDAAAAELAELGITD-VAVCGLAKRLE 549 Query: 503 RSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEIN 561 E + + ++L+ LY +QR+RDEAHRFAIT HR+RR + S LD + Sbjct: 550 -----EVWLPDDDDPVILSRTSEGLYLLQRVRDEAHRFAITYHRQRRSQGMTASALDGVP 604 Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 G+GP R++ LL+ FG+V+ + + E +A + G ++ A + H Sbjct: 605 GLGPARRQALLKHFGSVRKLRAAGVEEIAGVPGFGRRTAETVVAALH 651 >gi|312172020|emb|CBX80277.1| UvrABC system protein C [Erwinia amylovora ATCC BAA-2158] Length = 607 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 211/618 (34%), Positives = 339/618 (54%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY N + + ++ I I TV Sbjct: 8 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLASYFRGNLASRKTEALVGLIEQIDVTV 67 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+PYI ++ H P L HR + +G YF Sbjct: 68 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLSADH-HPRLASHRGAKHAKGEYF 126 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T++ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC ++ ++Y Sbjct: 127 GPFPNGYAVRETLSLLQKIFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVTEDEYA 186 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + + FL+G + + ++ M QA+ +E A RD++ A+ + Sbjct: 187 RQIDYVRLFLAGKDDQVLNQLVTRMEQASRDLRFEEAGRLRDQIQAVRRVTEKQFVSNQG 246 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + MD + ++ +AC+ F G+ G+ ++F K + ++++ F+ QFY Sbjct: 247 DDMDVIGVSYDSGMACLHVLFIRQGKVLGSRSYFPKVPGGTELSEVVQTFVGQFYLQGSE 306 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P +IL+ E LL S + G +V I +G++ + ++ A NA + + Sbjct: 307 ARTLPADILIDFTLPEKELLAASLSELAGRRVTIQSKPRGDRARYLKLARTNAATALISR 366 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L+ + L + + LP I R+E +D SH MG V VV NG V+++YR++ Sbjct: 367 LAQHSTIHQRLAELAQTLKLPAIR-RMECFDISHTMGEQTVASCVVFDANGPVRSEYRRY 425 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + + DD A M VL RR+S+ I+ + PDV+++DGGKGQ Sbjct: 426 NI--SGITPGDDYAAMDQVLRRRYSKAIEQSK---------------IPDVIVIDGGKGQ 468 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V ++ ++ +AKG R AG+E F+ +GE L P L+ IQ Sbjct: 469 LAQAKEVFAQLDVVWDKSHPLLLGVAKGSDRKAGLETLFLEPEGEGFSLPPDSPALHVIQ 528 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RD++H AIT HR +R K S L+ I GIGP R+++LL+ G ++ + +S E +A Sbjct: 529 HIRDDSHNHAITGHRNKRAKVKNTSALETIEGIGPKRRQMLLKYMGGLQPLINASMEEIA 588 Query: 591 SIEGISKKIACKIYNHFH 608 + GIS +A KI++ Sbjct: 589 GVPGISHALAEKIFHALK 606 >gi|153803514|ref|ZP_01958100.1| excinuclease ABC, subunit C [Vibrio cholerae MZO-3] gi|124120950|gb|EAY39693.1| excinuclease ABC, subunit C [Vibrio cholerae MZO-3] Length = 610 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 209/619 (33%), Positives = 327/619 (52%), Gaps = 31/619 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M + V+YVGKA +L+KR+ SY N + + ++S I I TV Sbjct: 11 LKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EAL+LE N IK+ P++N+LLRDDKS+PYI ++ HK P L HR + +G YF Sbjct: 71 THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKKRRGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GP+ AV +T++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC IS + Y Sbjct: 130 GPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQ 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 E VH + FL G ++ + + M QA+ + +E A RD++ A+ +Q + Sbjct: 190 EIVHXLRLFLQGKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDS 249 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-- 296 +D +ACI G+ G+ + F K S+++ ++ FL Q+Y Sbjct: 250 LEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHS 309 Query: 297 --KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 + P I+L+ EET L+I+ + G KV V G + + ++ A NA + T Sbjct: 310 EARSIPARIILNRGLTEETEALQIAISELAGRKVTFHVNPTGTRGRYLKLANTNALTAIT 369 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 K++ +++ K ++ + I R+E +D SH MG S + VV + G +K +YR Sbjct: 370 TKMNHKMTISQRFKALQEELGMDAIT-RMECFDISHTMGESTMASCVVFNQEGPLKQEYR 428 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ + DD A M VLERR+S+ + PD++ +DGGK Sbjct: 429 RYNI--TGITGGDDYAAMAQVLERRYSKQLD---------------SSKIPDIIFIDGGK 471 Query: 474 GQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GQL+ A ++ + II IAKG R G+E G+ L P L+ IQ Sbjct: 472 GQLNRAYEIISSCWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HR +R K S L+ I G+GP R++ LL+ G ++ + R+S E +A Sbjct: 532 HIRDESHNHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIA 591 Query: 591 SIEGISKKIACKIYNHFHK 609 + GIS +A IY + Sbjct: 592 KVPGISHALAENIYQALKQ 610 >gi|190149548|ref|YP_001968073.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303249565|ref|ZP_07335772.1| excinuclease ABC subunit C [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251808|ref|ZP_07533710.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307262868|ref|ZP_07544492.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|229557975|sp|B3H0B9|UVRC_ACTP7 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|189914679|gb|ACE60931.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302651639|gb|EFL81788.1| excinuclease ABC subunit C [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860715|gb|EFM92726.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306871773|gb|EFN03493.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 610 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 202/618 (32%), Positives = 329/618 (53%), Gaps = 33/618 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+M D ++YVGKA +L+KR+ SY S + + +++ I++I T+T Sbjct: 10 DVPHLPGVYRMYDAKNTIIYVGKAKDLKKRLSSYFRSQLASKKTEALVANIHHIETTITH 69 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N IK +P++N+LLRDDKS+PYIL+T KH+ P + R S + G YFGP Sbjct: 70 SETEALLLEHNYIKENQPKYNVLLRDDKSYPYILLT-KHQHPRITSFRGSKKVAGEYFGP 128 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183 + + AV +T+N LQ+ F +R C DS +++R+RPCL +QI RC PC S +Y Sbjct: 129 YPNAGAVRETLNLLQKLFPIRQCEDSYYKNRSRPCLQYQIGRCLAPCVEGYYSQAEYDNQ 188 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240 V+ + FL G + + E + + M A + D+E+A RD++ ++ +Q + Sbjct: 189 VNLVRLFLQGKDGQVVEHLVQKMENAAQELDFEAAARFRDQIQSVRAVQEKQFVSNERLD 248 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296 +D S+ + +AC+ F G+ G ++F K + + ++ F+ QFY Sbjct: 249 DLDIISIAYQHGIACVHILFVRHGKVLGNRSYFPKVPNNTDLTELADTFVGQFYLQMNQH 308 Query: 297 KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P I++ + E T+L + + +G+K + + A NA + T + Sbjct: 309 RTIPNQIIIDQPLSEATALANVLSEQAGHKVSIADKNIRGDKSRYLALAKTNAEAALTLQ 368 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L + + L I R+E +D SH MG V VV ENG +K+ YR+F Sbjct: 369 LKQDTHIRQRYDSLKALLNLAEIK-RMECFDISHTMGNQTVASCVVFDENGPLKSDYRRF 427 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M L +R+ + ++ E+ PD++ +DGGKGQ Sbjct: 428 NIEG--ITGGDDYAAMEQALLKRYGRHLEEEK---------------IPDIIFIDGGKGQ 470 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQ 531 L+ A LNV + + +I +AKG +R AG+E + K + + L P L+ IQ Sbjct: 471 LNRALETFASLNVSWDKRKPLLIGVAKGVERKAGLETLLISKWDKEIHLPPDSPALHLIQ 530 Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AIT HRK+R+KA S L+ I G+G R++ LL+ G ++ + ++ E + Sbjct: 531 HIRDESHNHAITGHRKKRQKAFTESGLESIAGVGAKRRQALLKYLGGMQGVKSATLEEIQ 590 Query: 591 SIEGISKKIACKIYNHFH 608 S+ GISK++A I++ Sbjct: 591 SVPGISKQLAEVIFDTLQ 608 >gi|289665901|ref|ZP_06487482.1| excinuclease ABC subunit C [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 618 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 230/607 (37%), Positives = 340/607 (56%), Gaps = 21/607 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+ PGVY+M +LYVGKA L+KR+ SY + R+T M+SQ+ + TVT Sbjct: 17 QLSTAPGVYRMYAGDDTLLYVGKAGALRKRVGSYFNGTPKNARLTSMLSQVARMDVTVTR 76 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE +IK L PR+N+ LRDDKS+PY+L+T + P + HR +QG YFGP Sbjct: 77 SEAEALLLENQLIKSLSPRYNVSLRDDKSYPYVLLT-REDWPRIALHRGPRAVQGRYFGP 135 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + V V +T++ + + F LRSC DSVFR+R+RPCL +QI RCSGPC +++ Y E V Sbjct: 136 YTGVTGVRETLSLMHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSGPCVDLVAAPDYAESV 195 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242 A FL G + L E+I ++M QA+ ++E A RD L++L +QN + Sbjct: 196 RRATMFLEGKSDQLGEEIMQSMQQASEALEFERAARLRDLLSSLRSMQNRQYVDGRAADL 255 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D + + AC+ F G+N GT +FF KT+ E + +IL F+ Q+Y + P Sbjct: 256 DVLACATQSSQACVLLLSFRDGRNLGTRSFFPKTNGEDSADEILGAFVSQYYAEHSPPRE 315 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 ILL E E L+E + +KV + +GE+ + A NA + +L+++ + Sbjct: 316 ILLDREIPEAELIEAALSTAAEHKVALKWNVRGERAGYLLLATRNAQLTLVTELTSQSAQ 375 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 + + L KR+E +D SH MG + V VV +G V+ QYR+FN+ + + Sbjct: 376 HARSEALREMLGLAEPVKRVECFDISHTMGEATVASCVVFDASGPVRGQYRRFNI--SGI 433 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD A MR +ERRF + ++ PD++++DGG GQL+ AQ Sbjct: 434 TPGDDYAAMRQAIERRFRRAVEEN--------------GVLPDLLLIDGGAGQLAQAQAA 479 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 L L VEN + ++ +AKG +R AG E + G L P L FIQ++RDEAHRFAI Sbjct: 480 LADLGVEN-VLLLGVAKGEERRAGHEALIMADGRELRPGAASPALQFIQQVRDEAHRFAI 538 Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR+KA S L++I GIGP R+ LL+ FG + + + +A +EG++ +A Sbjct: 539 TGHRGRRQKARMTSKLEDIPGIGPRRRASLLKHFGGLVGLKAAGEAEIARVEGVNAALAA 598 Query: 602 KIYNHFH 608 +IY + H Sbjct: 599 RIYANLH 605 >gi|303239029|ref|ZP_07325559.1| excinuclease ABC, C subunit [Acetivibrio cellulolyticus CD2] gi|302593367|gb|EFL63085.1| excinuclease ABC, C subunit [Acetivibrio cellulolyticus CD2] Length = 614 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 197/620 (31%), Positives = 337/620 (54%), Gaps = 24/620 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 +++P+ PGVY M DI G ++Y+GKA L+ R++ Y S +N T ++ M+ +I + Sbjct: 7 ELKKLPDKPGVYIMKDINGEIIYIGKAVVLKNRVRQYFQSLSNQTPKVQAMVPRIKEFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT TE+EAL+LE N+IK+ +P+FNI+L+DDK++PYI +T + P + R Sbjct: 67 IVTDTELEALILECNLIKKYRPKFNIMLKDDKTYPYIKVTMNEEFPRILMTRKVEKDGAK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV+ TI+ L++ F ++SC + + RPCL + I +C GPC G++S + Sbjct: 127 YFGPYTSGFAVKDTIDLLKKLFPIKSCNKIFPKDARKQRPCLNYYIYQCLGPCQGDVSKQ 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y +++ FLSG + +++ M +A+ ++E A RD++ +L HI + Sbjct: 187 EYRALMNDICSFLSGKQDEIIKRLETEMAKASENMEFEKAAAFRDKINSLRHIAQKQKVV 246 Query: 239 YNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 M D + + +C+Q F G+ G F + + T++++++ F++QFY+ Sbjct: 247 STTMEDQDVVAFSKDPTDSCVQVFFIRGGKLIGREHFIFEGAGDVTDSELMTSFIKQFYS 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P I+L E+ +E ++E + KV I VP++GEK K++E NA + Q Sbjct: 307 STAYIPREIVLQEDIDEIDIIEKWLSNKREAKVHIKVPRKGEKLKLVEMVSQNALIALNQ 366 Query: 355 KLSTEISHQMILKD----FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + + + K+ + L P+RIE YD S+ V MVV K Sbjct: 367 FKDNIRNQESLAKEGISKLKELLELDGAPQRIEAYDISNTGSTEIVASMVVFEGGFPAKK 426 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 +YR+F + +V Q+D A M+ V+ RRF+ K +E+ + F PD+++ D Sbjct: 427 EYRRFKVKSLNV--QNDYASMQEVIYRRFTHARKEKEDADGEA-----KFSRLPDLILAD 479 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GG G +++ VL ++N+ I + + K V + L+ +L FI Sbjct: 480 GGLGHVNSVLSVLGEMNIS--IPVAGMVKDANHRTRG---IVTTDKEFDLSKDLTLLRFI 534 Query: 531 QRLRDEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 ++DEAHRFAI +RK +K+ S LDEI GIGP +K+ L++ FG++K I ++ + L Sbjct: 535 TSIQDEAHRFAIEYNRKLVQKRYKGSELDEIEGIGPKKKKALIKHFGSLKNIKQAQVDDL 594 Query: 590 ASIEGISKKIACKIYNHFHK 609 A++EGI+ ++A KI+ +F + Sbjct: 595 AAVEGINLELAKKIFEYFRQ 614 >gi|15641227|ref|NP_230859.1| excinuclease ABC subunit C [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121729871|ref|ZP_01682299.1| excinuclease ABC, subunit C [Vibrio cholerae V52] gi|147674383|ref|YP_001216784.1| excinuclease ABC subunit C [Vibrio cholerae O395] gi|227081386|ref|YP_002809937.1| excinuclease ABC, subunit C [Vibrio cholerae M66-2] gi|254848339|ref|ZP_05237689.1| UvrABC system protein C [Vibrio cholerae MO10] gi|298498686|ref|ZP_07008493.1| excinuclease ABC, C subunit [Vibrio cholerae MAK 757] gi|21264129|sp|Q9KSP2|UVRC_VIBCH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|189038129|sp|A5F1X2|UVRC_VIBC3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|254764951|sp|C3LLR0|UVRC_VIBCM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|9655694|gb|AAF94373.1| excinuclease ABC, subunit C [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121628380|gb|EAX60880.1| excinuclease ABC, subunit C [Vibrio cholerae V52] gi|146316266|gb|ABQ20805.1| excinuclease ABC, subunit C [Vibrio cholerae O395] gi|227009274|gb|ACP05486.1| excinuclease ABC, subunit C [Vibrio cholerae M66-2] gi|227013131|gb|ACP09341.1| excinuclease ABC, subunit C [Vibrio cholerae O395] gi|254844044|gb|EET22458.1| UvrABC system protein C [Vibrio cholerae MO10] gi|297543019|gb|EFH79069.1| excinuclease ABC, C subunit [Vibrio cholerae MAK 757] Length = 610 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 209/619 (33%), Positives = 327/619 (52%), Gaps = 31/619 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M + V+YVGKA +L+KR+ SY N + + ++S I I TV Sbjct: 11 LKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EAL+LE N IK+ P++N+LLRDDKS+PYI ++ HK P L HR + +G YF Sbjct: 71 THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKKRRGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GP+ AV +T++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC IS + Y Sbjct: 130 GPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQ 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 E VH + FL G ++ + + M QA+ + +E A RD++ A+ +Q + Sbjct: 190 EIVHYLRLFLQGKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDS 249 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-- 296 +D +ACI G+ G+ + F K S+++ ++ FL Q+Y Sbjct: 250 LEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHS 309 Query: 297 --KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 + P I+L+ EET L+I+ + G KV V G + + ++ A NA + T Sbjct: 310 EARSIPARIILNRGLTEETEALQIAISELAGRKVTFHVNPTGTRGRYLKLANTNALTAIT 369 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 K++ +++ K ++ + I R+E +D SH MG S + VV + G +K +YR Sbjct: 370 TKMNHKMTISQRFKALQEELGMDAIT-RMECFDISHTMGESTMASCVVFNQEGPLKQEYR 428 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ + DD A M VLERR+S+ + PD++ +DGGK Sbjct: 429 RYNI--TGITGGDDYAAMAQVLERRYSKQLD---------------SSKIPDIIFIDGGK 471 Query: 474 GQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GQL+ A ++ + II IAKG R G+E G+ L P L+ IQ Sbjct: 472 GQLNRAYEIISSCWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HR +R K S L+ I G+GP R++ LL+ G ++ + R+S E +A Sbjct: 532 HIRDESHNHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIA 591 Query: 591 SIEGISKKIACKIYNHFHK 609 + GIS +A IY + Sbjct: 592 KVPGISHALAENIYQALKQ 610 >gi|289165978|ref|YP_003456116.1| excinuclease ABC subunit C [Legionella longbeachae NSW150] gi|288859151|emb|CBJ13080.1| putative excinuclease ABC subunit C [Legionella longbeachae NSW150] Length = 620 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 214/622 (34%), Positives = 344/622 (55%), Gaps = 34/622 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P PG+Y+MLD +G VLYVGKA NL+KR+ SY + + +++QI +I +VT Sbjct: 13 KLPNEPGIYRMLDESGAVLYVGKAANLKKRVTSYFNKQKTGIKTRSLVTQIASIEISVTR 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI-QGSYFG 123 +E EALLLE+N+IK LKP++N+LLRDDKS+PYI +++ + P + +R G +FG Sbjct: 73 SETEALLLESNLIKTLKPKYNVLLRDDKSYPYIHLSNHPQFPRIESYRSKKKPVSGDFFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ S V++TI ++Q+ F +R+C DS F R+RPCL +QIKRC+ PC IS E Y Sbjct: 133 PYPSSGTVKETIVTIQKVFKIRNCRDSYFNARSRPCLQYQIKRCTAPCVNYISPEDYKRS 192 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYNR 241 V +A +FL G + +++A+ M++A + ++E A + RD++ L +Q + Sbjct: 193 VQDAMRFLQGKCQLILDELAKRMDKAVSELNFEEAALLRDQIKCLRLVQEQQGILQLQGD 252 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ---------ILSYFLRQ 292 D ++ N AC+Q GQ + ++F + + I S F+ Sbjct: 253 ADAIAIEVNPGFACVQCVTIRDGQILSSRSYFPSLPQYGLDEELSMETLWQQIFSAFIGF 312 Query: 293 FYTDKP--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR 350 +Y D P I+ + + L+ + +Q G K+ V +G K + ++ AL N Sbjct: 313 YYLDASEKIPALIITNHPVDNQKTLQEALSQQRGKSCKLQVNPRGVKLRWMDFALNNLRV 372 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 S + ++ + + ++ K L +R+E +D SH +G + V VV + G N Sbjct: 373 SVAEYITKHSTMRSRFQELEKFLGLKEPIERMECFDISHTLGEATVASCVVFEQEGPCPN 432 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YR+FN+ + + DD A M + RRF +L++ + S PDV+I+D Sbjct: 433 LYRRFNI--DGITPGDDYAAMEQAITRRFKRLVETQ---------------SLPDVLIID 475 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYF 529 GGKGQ++ AQ L LN+ + I ++ IAKGP R AG EK V L L L+ Sbjct: 476 GGKGQVAVAQKALLSLNISSVI-LLGIAKGPSRKAGWEKLILVHDSLELSLPDDSRALHL 534 Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 +Q +RDEAHRFAIT HRK+R KK S L++I G+G R++ LL FG ++ ++++ E Sbjct: 535 LQHIRDEAHRFAITAHRKKRQKKQMDSVLEDIEGVGRKRRQALLHRFGGIRELAKAPLEE 594 Query: 589 LASIEGISKKIACKIYNHFHKN 610 +A ++GI++ +A +I+ FH Sbjct: 595 IAKVQGINEHLAKRIFQFFHGE 616 >gi|309811791|ref|ZP_07705565.1| excinuclease ABC, C subunit [Dermacoccus sp. Ellin185] gi|308434212|gb|EFP58070.1| excinuclease ABC, C subunit [Dermacoccus sp. Ellin185] Length = 667 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 193/653 (29%), Positives = 308/653 (47%), Gaps = 46/653 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRF 60 + +P PGVY+ D GRV+YVGKA NL+ R+ +Y R M++ ++ + Sbjct: 10 KTGDIPTEPGVYRFRDRDGRVIYVGKAKNLRSRLSNYFQDLRLLHPRTRTMVTTAASVEW 69 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T+ TEVEAL LE IK PRFN+ RDDKS+PY+ +T +P R Sbjct: 70 TIVRTEVEALQLEYAWIKEFDPRFNVKYRDDKSYPYLAVTMSDAVPRAQVMRGRKRPGTR 129 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISS 177 YFGPF A+ T++ L R F +R+C++ V+R RPCLL I +CS PC G+++ Sbjct: 130 YFGPFTHAWAIRDTLDQLMRVFPMRTCSNGVYRRAEASGRPCLLGYIDKCSAPCVGKVTK 189 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 ++ E + F++G + +I R M A D+E A RD L AL + + Sbjct: 190 AEHREIAQDFCDFMAGDSARFTREIERRMKAAAADLDFEQAARLRDDLGALEKVLQKSAV 249 Query: 238 IYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE--STNAQILSYFLRQ 292 +++ D F + + A +Q G+ RG + S+ A ++ L + Sbjct: 250 VFDDATDADVFGVAEDDLEAAVQVFHVRGGRIRGQRGWVTDKGSDAGVNTADLVEAMLLE 309 Query: 293 FYTD----KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA 348 Y D P +L+ + + ++ G V + VP++G+KR++ NA Sbjct: 310 VYGDLQGRDDVPREVLVPSLPPDVETVSSWLRERRGSNVDVRVPQRGDKRELAATVAKNA 369 Query: 349 HRSHTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGE 404 + + + S L++ + LP P RIE +D SH+ G + VG MVV + Sbjct: 370 EHALARHKVSRASDLTARSQALEELQENLGLPEAPLRIECFDISHVQGTNVVGSMVVFED 429 Query: 405 NGFVKNQYRKFNLH----PNDVKTQDDCAMMRMVLERRFSQLIKNEENLN---------- 450 K++YR+F ++ + DD A M VL RRF++L K +L Sbjct: 430 GLPRKSEYRRFIVNGIEGEDGTLRNDDVAAMHEVLTRRFARLAKESADLAPATTGEIPAD 489 Query: 451 --------FHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPK 502 + F P ++++DGG+ Q+ AA L + ++ I ++ +AK + Sbjct: 490 AATAGPSLRDENGRIKRFAYRPQLLVVDGGRPQVDAAARALADVGFDD-IPVVGLAKRLE 548 Query: 503 RSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEIN 561 E + V ++L LY +QR+RDEAHRFAIT HR+RR K S LD I Sbjct: 549 -----EVWLVDDDYPVILPRTSEALYLLQRVRDEAHRFAITFHRERRSKSMTTSALDGIA 603 Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 G+GP +++ LL FG++K I + + L ++GI +A I + Sbjct: 604 GLGPAKQKALLAHFGSLKRIRAADADALCEVKGIGPTLAETIVRSLRQEQGEP 656 >gi|188534204|ref|YP_001908001.1| excinuclease ABC subunit C [Erwinia tasmaniensis Et1/99] gi|229558028|sp|B2VIA0|UVRC_ERWT9 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|188029246|emb|CAO97123.1| UvrABC system protein C [Erwinia tasmaniensis Et1/99] Length = 610 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 212/618 (34%), Positives = 335/618 (54%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY N + + +++ I I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRGNLGSRKTEALVALIEQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+PYI ++ H P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLSADH-HPRLASHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T++ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC ++ E+Y Sbjct: 130 GPFPNGYAVRETLSLLQKIFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVTEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + + FLSG + + ++ M QA+ +E A RD++ A+ + Sbjct: 190 RQIDYVRLFLSGKDDQVLNQLVARMEQASGDLRFEEAGRLRDQIQAVRRVTEKQFVSNQG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + MD + + +AC+ F G+ G+ ++F K + A+++ F+ QFY Sbjct: 250 DDMDVIGVSFDSGMACLHVLFIRQGKVLGSRSYFPKVPGGTELAEVVQTFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P +IL+ E LL S G +V I +G++ + ++ A NA + + Sbjct: 310 ARTLPSDILIDFTLPEKDLLAASLTALSGRRVSIQSKPRGDRARYLKLARTNAATALITR 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L+ + L + LP I R+E +D SH MG V VV NG ++++YR++ Sbjct: 370 LAQHSTIHQRLAALAQTLKLPAIG-RMECFDISHTMGEQTVASCVVFDANGPLRSEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + + DD A M VL RR+ + I+ + PDV+++DGGKGQ Sbjct: 429 NI--SGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVIVIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V ++ ++ +AKG R AG+E F+ +GE L P L+ IQ Sbjct: 472 LAQAKEVFAQLDVTWDKSHPLLLGVAKGTDRKAGLETLFLEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RD++H AIT HR +R K S L+ I GIGP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDDSHNHAITGHRNKRAKVKNTSALETIEGIGPKRRQMLLKYMGGLQPLINASKEEIA 591 Query: 591 SIEGISKKIACKIYNHFH 608 + GIS +A KI+ Sbjct: 592 RVPGISTALAEKIFYALK 609 >gi|254292119|ref|ZP_04962892.1| excinuclease ABC, subunit C [Vibrio cholerae AM-19226] gi|150421954|gb|EDN13928.1| excinuclease ABC, subunit C [Vibrio cholerae AM-19226] Length = 610 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 209/619 (33%), Positives = 327/619 (52%), Gaps = 31/619 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M + V+YVGKA +L+KR+ SY N + + ++S I I TV Sbjct: 11 LKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EAL+LE N IK+ P++N+LLRDDKS+PYI ++ HK P L HR + +G YF Sbjct: 71 THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKKRRGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GP+ AV +T++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC IS + Y Sbjct: 130 GPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQ 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 E VH + FL G ++ + + M QA+ + +E A RD++ A+ +Q + Sbjct: 190 EIVHYLRLFLQGKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDS 249 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-- 296 +D +ACI G+ G+ + F K S+++ ++ FL Q+Y Sbjct: 250 LEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHS 309 Query: 297 --KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 + P I+L+ EET L+I+ + G KV V G + + ++ A NA + T Sbjct: 310 EARSIPARIILNRGLTEETEALQIAISELAGRKVTFHVNPTGTRGRYLKLANTNALTAIT 369 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 K++ +++ K ++ + I R+E +D SH MG S + VV + G +K +YR Sbjct: 370 TKINHKMTISQRFKALQEELGMDAIT-RMECFDISHTMGESTMASCVVFNQEGPLKQEYR 428 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ + DD A M VLERR+S+ + PD++ +DGGK Sbjct: 429 RYNI--TGITGGDDYAAMAQVLERRYSKQLD---------------SSKIPDIIFIDGGK 471 Query: 474 GQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GQL+ A ++ + II IAKG R G+E G+ L P L+ IQ Sbjct: 472 GQLNRAYEIISSCWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HR +R K S L+ I G+GP R++ LL+ G ++ + R+S E +A Sbjct: 532 HIRDESHNHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIA 591 Query: 591 SIEGISKKIACKIYNHFHK 609 + GIS +A IY + Sbjct: 592 KVPGISHALAENIYQALKQ 610 >gi|253689044|ref|YP_003018234.1| excinuclease ABC, C subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755622|gb|ACT13698.1| excinuclease ABC, C subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 610 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 209/618 (33%), Positives = 331/618 (53%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D V+YVGKA +L+KR+ SY S+ + + ++ I +I T+ Sbjct: 11 LKTVTSQPGVYRMYDAGDTVIYVGKAKDLKKRLASYFRSHVASRKTEALVKSIKHIDVTI 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPMIFLS-GDAHPRLAVHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + +AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E Y Sbjct: 130 GPFPNGNAVRETLILLQKLFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVSGLVSEEDYQ 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + V + FLSG + + ++ M A+ ++E A RD++ A+ + + Sbjct: 190 QQVDYVRLFLSGKDQQVLNQLISRMEAASRDLNFEDAARIRDQIQAVRRVTEKQFVSGDG 249 Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 +D S+ + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 250 EDLDVISVAFDAGMACVYVLFIRQGKVLGSRSYFPKVPGGTELGEVVQTFVGQFYLQGSL 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +L S + G KV+I +G++ + ++ A NA + K Sbjct: 310 SRTLPAEILLDFTLPDKDVLTESLTEVAGRKVQIQTKPRGDRARYLKLARTNAATALVTK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP R+E +D SH MG V VV NG ++++YR++ Sbjct: 370 LSQQSTIHQRLAALASVLQLP-EIHRMECFDISHTMGEQTVASCVVFDANGPLRSEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + + DD A M VL RR+ + + + PDV+++DGGKGQ Sbjct: 429 NI--SGITPGDDYAAMAQVLRRRYGKALDESK---------------IPDVIVIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQ 531 L AQ V L V +N+ ++ +AKG R AG+E F + GE + L P L+ IQ Sbjct: 472 LGQAQAVFDSLQVSWDKNKPLLLGVAKGSDRKAGLETLFFEATGEGVALPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RD++H AI HRK+R K S L+ I G+GP R++ LL+ G ++ + +S E +A Sbjct: 532 HIRDDSHDHAIGGHRKKRAKVKNTSTLELIEGVGPKRRQTLLKYMGGLQPLMNASIEEIA 591 Query: 591 SIEGISKKIACKIYNHFH 608 ++ GIS +A KI++ Sbjct: 592 NVPGISHALAEKIFHALK 609 >gi|331086241|ref|ZP_08335323.1| UvrABC system protein C [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406400|gb|EGG85914.1| UvrABC system protein C [Lachnospiraceae bacterium 9_1_43BFAA] Length = 612 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 199/619 (32%), Positives = 329/619 (53%), Gaps = 25/619 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M D ++YVGKA +L+ R++ Y ++ N +I M++ I+ + Sbjct: 7 ELKKLPSKPGVYLMHDEKDDIIYVGKAISLKNRVRQYFQASRNKGVKIEQMVTHISRFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK +P++N +L DDK++P+I +T + P + R+ + Sbjct: 67 IVTDSELEALVLECNLIKEHRPKYNTMLMDDKTYPFIKVTIEEAYPRILFAREMKKDKAK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV+ TI L++ + +RSC ++ + + RPCL + IK+C PC IS E Sbjct: 127 YFGPYTSAGAVKDTIELLRKLYHIRSCNRNLPKDIGKERPCLNYHIKQCYAPCQNYISQE 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y E V +A +FLSG + +++ M A+ ++E A+ +RD LA++ I Sbjct: 187 AYRESVQKAVEFLSGKYDPILKELQEKMECASEAMEFEKAMEYRDLLASVKQIAQKQKIT 246 Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D ++ A +Q F G+ G F++ A+IL+ F++QFY Sbjct: 247 NSDGEDKDILAVATEDRDAVVQVFFIRGGRLIGRDHFYMTIADREPKAEILTSFIKQFYA 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351 P P +++ +E E+ +LE ++ G++V I VPK+GEK K++E A NA Sbjct: 307 GTPYVPRELMIQQEIEDQEVLEEWLSERRGHRVHIRVPKKGEKEKLVELAKKNAQLVLST 366 Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E +K+ K + + RIE +D S+ G ++VG M+V + +N Sbjct: 367 DKERLKREEGRTIGAVKEIEKWLGIASVK-RIEAFDISNTNGFNSVGSMIVYEKGKPKRN 425 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YRKF + V+ DD A MR VL RRF ++ E K F ++PD++++D Sbjct: 426 DYRKFKIKG--VQGADDYASMREVLTRRFEHGMREREE-----GKDHGGFQTFPDLIMMD 478 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ++ A VL +L + I + + K E + ++ I Sbjct: 479 GGKGQVNIALEVLDQLGI--VIPVCGMVKDDHHRTRG---LYYNNEEIGIDRNSEGFRLI 533 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DEAHRFAI HRK R + +S LD+I GIGP R++ L++ F ++ I ++ E L Sbjct: 534 TRIQDEAHRFAIEFHRKLRSQGQVHSILDDIPGIGPARRKALMKHFISLDAIKAATIEEL 593 Query: 590 ASIEGISKKIACKIYNHFH 608 I +++K A ++YN FH Sbjct: 594 KEIPSMNEKSANEVYNFFH 612 >gi|297578813|ref|ZP_06940741.1| excinuclease ABC [Vibrio cholerae RC385] gi|297536407|gb|EFH75240.1| excinuclease ABC [Vibrio cholerae RC385] Length = 610 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 208/619 (33%), Positives = 326/619 (52%), Gaps = 31/619 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M + V+YVGKA +L+KR+ SY N + + ++S I I TV Sbjct: 11 LKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EAL+LE N IK+ P++N+LLRDDKS+PYI ++ HK P L HR + +G YF Sbjct: 71 THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKKRRGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GP+ AV +T++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC IS + Y Sbjct: 130 GPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQ 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 E VH + FL G ++ + + M QA+ + +E A RD++ A+ +Q + Sbjct: 190 EIVHYLRLFLQGKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDS 249 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-- 296 +D +ACI G+ G+ + F K S+++ ++ FL Q+Y Sbjct: 250 LEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHS 309 Query: 297 --KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 + P I+L+ EET L+ + + G KV V G + + ++ A NA + T Sbjct: 310 EARSIPARIILNRGLTEETEALQTAISELAGRKVTFHVNPTGTRGRYLKLANTNALTAIT 369 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 K++ +++ K ++ + I R+E +D SH MG S + VV + G +K +YR Sbjct: 370 TKINHKMTINQRFKALQEELGMDAIT-RMECFDISHTMGESTMASCVVFNQEGPLKQEYR 428 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ + DD A M VLERR+S+ + PD++ +DGGK Sbjct: 429 RYNI--TGITGGDDYAAMAQVLERRYSKQLD---------------SSKIPDIIFIDGGK 471 Query: 474 GQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GQL+ A ++ + II IAKG R G+E G+ L P L+ IQ Sbjct: 472 GQLNRAYEIISSCWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HR +R K S L+ I G+GP R++ LL+ G ++ + R+S E +A Sbjct: 532 HIRDESHNHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIA 591 Query: 591 SIEGISKKIACKIYNHFHK 609 + GIS +A IY + Sbjct: 592 KVPGISHALAENIYQALKQ 610 >gi|292487900|ref|YP_003530775.1| UvrABC system protein C [Erwinia amylovora CFBP1430] gi|292899121|ref|YP_003538490.1| UvrABC system protein C [Erwinia amylovora ATCC 49946] gi|291198969|emb|CBJ46080.1| UvrABC system protein C (excinuclease ABC subunit C) [Erwinia amylovora ATCC 49946] gi|291553322|emb|CBA20367.1| UvrABC system protein C [Erwinia amylovora CFBP1430] Length = 607 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 211/618 (34%), Positives = 339/618 (54%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY N + + ++ I I TV Sbjct: 8 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLASYFRGNLASRKTEALVGLIEQIDVTV 67 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+PYI ++ H P L HR + +G YF Sbjct: 68 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLSADH-HPRLASHRGAKHAKGEYF 126 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T++ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC ++ ++Y Sbjct: 127 GPFPNGYAVRETLSLLQKIFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVTEDEYA 186 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + + FL+G + + ++ M QA+ +E A RD++ A+ + Sbjct: 187 RQIDYVRLFLAGKDDQVLNQLVMRMEQASRDLRFEEAGRLRDQIQAVRRVTEKQFVSNQG 246 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + MD + ++ +AC+ F G+ G+ ++F K + ++++ F+ QFY Sbjct: 247 DDMDVIGVSYDSGMACLHVLFIRQGKVLGSRSYFPKVPGGTELSEVVQTFVGQFYLQGSE 306 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P +IL+ E LL S + G +V I +G++ + ++ A NA + + Sbjct: 307 ARTLPADILIDFTLPEKELLAASLSELAGRRVTIQSKPRGDRARYLKLARTNAATALISR 366 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L+ + L + + LP I R+E +D SH MG V VV NG V+++YR++ Sbjct: 367 LAQHSTIHQRLAELAQTLKLPAIR-RMECFDISHTMGEQTVASCVVFDANGPVRSEYRRY 425 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + + DD A M VL RR+S+ I+ + PDV+++DGGKGQ Sbjct: 426 NI--SGITPGDDYAAMDQVLRRRYSKAIEQSK---------------IPDVIVIDGGKGQ 468 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V ++ ++ +AKG R AG+E F+ +GE L P L+ IQ Sbjct: 469 LAQAKEVFAQLDVVWDKSHPLLLGVAKGSDRKAGLETLFLEPEGEGFSLPPDSPALHVIQ 528 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RD++H AIT HR +R K S L+ I GIGP R+++LL+ G ++ + +S E +A Sbjct: 529 HIRDDSHNHAITGHRNKRAKVKNTSALETIEGIGPKRRQMLLKYMGGLQPLINASMEEIA 588 Query: 591 SIEGISKKIACKIYNHFH 608 + GIS +A KI++ Sbjct: 589 GVPGISHALAEKIFHALK 606 >gi|188991460|ref|YP_001903470.1| excinuclease ABC subunit C [Xanthomonas campestris pv. campestris str. B100] gi|229557875|sp|B0RSI3|UVRC_XANCB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|167733220|emb|CAP51418.1| excinuclease ABC subunit C [Xanthomonas campestris pv. campestris] Length = 618 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 228/607 (37%), Positives = 340/607 (56%), Gaps = 21/607 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++ PGVY+M +LYVGKA L+KR+ SY + R+T M+SQ+ + TVT Sbjct: 17 RLSTAPGVYRMYAADDSLLYVGKAGALRKRVGSYFNGTPKNARLTSMLSQVARMDVTVTR 76 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE +IK L PR+N+ LRDDKS+PY+L+T + P + HR + G YFGP Sbjct: 77 SEAEALLLENQLIKSLSPRYNVSLRDDKSYPYVLLT-REDWPRIALHRGPRAVNGRYFGP 135 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 +A V AV +T+N + + F LRSC DSVFR+R+RPCL +QI RCS PC ++++ Y E V Sbjct: 136 YAGVTAVRETLNLMHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSAPCVDLVAAQDYQEAV 195 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242 A FL G + L E+I +M QA+ ++E A RD L++L +QN + Sbjct: 196 RRATMFLEGKSDQLGEEIMHSMQQASEALEFERAARLRDLLSSLRSMQNRQYVDGRAADL 255 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D + + AC+ F G+N GT +FF KT+ E + +IL+ F+ Q+Y + P Sbjct: 256 DVLACATQSSQACVLLLSFRDGRNLGTRSFFPKTNGEDSAEEILAAFVSQYYAEHAPPRE 315 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 ILL + L+E + +KV + +GE+ + A NA + +L+++ + Sbjct: 316 ILLDRAIPDAELIEAALSAAAEHKVALKWNVRGERAGYLLLASRNAQLTLVTELTSQSAQ 375 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 + + L KR+E +D SH MG + V VV +G V+ QYR+FN+ + + Sbjct: 376 HARSEALREMLGLAEQVKRVECFDISHTMGEATVASCVVFDASGPVRGQYRRFNI--SGI 433 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD A MR +ERRF + ++ PDV+++DGG GQL+ AQ Sbjct: 434 TPGDDYAAMRQAIERRFRRAVEEN--------------GVLPDVLLIDGGAGQLAQAQAA 479 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 L L +EN + ++ +AKG +R AG E + G L P L FIQ++RDEAHRFAI Sbjct: 480 LADLGIEN-VLLVGVAKGEERRAGHEALILADGRELRPGAASPALQFIQQVRDEAHRFAI 538 Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR+KA S L++I GIGP R+ LL+ FG + + + +A +EG++ +A Sbjct: 539 TGHRGRRQKARMTSKLEDIPGIGPRRRASLLKHFGGLVGLKAAGEAEIARVEGVNAALAA 598 Query: 602 KIYNHFH 608 +IY + H Sbjct: 599 RIYANLH 605 >gi|332670369|ref|YP_004453377.1| excinuclease ABC subunit C [Cellulomonas fimi ATCC 484] gi|332339407|gb|AEE45990.1| excinuclease ABC, C subunit [Cellulomonas fimi ATCC 484] Length = 698 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 193/642 (30%), Positives = 312/642 (48%), Gaps = 45/642 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 ++PE PGVY+ D GRV+YVGKA +L+ R+ SY +N R M++ ++ +TV Sbjct: 13 EIPESPGVYRFRDEHGRVIYVGKAKSLRPRLSSYFQDVHNLHPRTQQMVTTAASVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEV AL LE IK PRFN+ RDDKS+PY+ +T + P + R + YFG Sbjct: 73 PTEVAALALEYTWIKEFDPRFNVKYRDDKSYPYLAVTMSDEFPRVQVMRGAKRKGTRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180 P+A A+ +T++ L R F +R+C+ VF+ + RPCLL I +CS PC G IS + + Sbjct: 133 PYAHAWAIRETVDLLLRVFPVRTCSAGVFKRAHQQGRPCLLGYIDKCSAPCVGRISPDDH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + F++G ++ M +A + DYE A RD +A L N + Sbjct: 193 HALAQDFCDFMAGDTARFTRRLTARMKEAAAELDYEQAARLRDDIATLEKATEKNAVVLK 252 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294 D F+L + A +Q G+ RG + ++ + T+A+++ + L+Q Y Sbjct: 253 DGTDADIFALAGDDLEAAVQVFHVRDGRIRGQRGWVVEKVEDVTDAELVEHLLQQVYGTD 312 Query: 295 ---TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 P +L+ + ++ G +V++ VP++G+KR++ NA + Sbjct: 313 VDAGTASVPREVLVPVLPPDVEQVQDWLAGMRGARVQVRVPQRGDKRELAATVHRNAEHA 372 Query: 352 HTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 + + L++ + LP P RIE YD SH G MVV + Sbjct: 373 LLLHRTRRAGDLTTRSQALREIQEALDLPSAPLRIECYDVSHNQGTFQSASMVVFEDGLA 432 Query: 408 VKNQYRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKN--------------------E 446 K +YR FNL D + +DD A M V+ RRF + + Sbjct: 433 RKGEYRLFNLRGTDGEGARDDTAAMHEVITRRFRRYLAERSAAGDVELGLGDDDEDAPRR 492 Query: 447 ENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAG 506 + F P++V++DGG+ Q++AA L +L +++ + + +AK + Sbjct: 493 SGPVDETTGKPQRFAYPPNLVVVDGGQPQVAAAAAALAELGIDD-VALCGLAKRLE---- 547 Query: 507 MEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGP 565 E + + ++L LY +QRLRDEAHRFAI+ HR+RR K S LD++ G+GP Sbjct: 548 -EVWLPGEDYPVILQRSSEGLYLLQRLRDEAHRFAISAHRRRRSKGMTASVLDDVPGLGP 606 Query: 566 LRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 R+ LL+ FG+VK + +S +AS++G+ + A + Sbjct: 607 ARRAALLRHFGSVKRLRAASVAEIASVQGMGDRTAAAVVAAL 648 >gi|162139923|ref|YP_340422.2| excinuclease ABC subunit C [Pseudoalteromonas haloplanktis TAC125] gi|119367818|sp|Q3IIM0|UVRC_PSEHT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C Length = 607 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 219/614 (35%), Positives = 331/614 (53%), Gaps = 27/614 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY MLD +V+YVGKA +L+KR+ SY SN + ++S I N+ T+ Sbjct: 10 LKTLSSEPGVYCMLDSDNQVIYVGKAKHLKKRVSSYFRSNITDSKTRVLVSNICNVEVTL 69 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N+IK+ +PR+NILLRDDKS+PYIL+T+ HK P L HR S ++G YF Sbjct: 70 TNTETEALLLENNLIKKYQPRYNILLRDDKSYPYILLTN-HKHPRLAFHRGSRKVKGEYF 128 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF S AV +++ +Q+ F +R C D +R R+RPCL +Q+KRCS PC ++S E Y E Sbjct: 129 GPFPSAGAVSESLRLMQKIFPIRQCEDVYYRARSRPCLQYQLKRCSAPCVNKVSDEDYTE 188 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240 V +KFL+G +H + + + M A+ + ++E A RD++ L +Q N Sbjct: 189 QVDYVRKFLTGKSHEVIADLIKKMEAASQQLNFELAAKVRDQIMLLRKMQEQQSISGNFA 248 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296 MD H L I + G+ T+F K +S+ +IL+ FL Q+Y Sbjct: 249 EMDVVGFAHLNGLNGIHLLMIRDHKVLGSKTYFPKVPKDSSEQEILTSFLGQYYLAPGAT 308 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 + I+L E +E+ +L + + KV + V +GE+ + ++ A NA S T K Sbjct: 309 GRIAKEIILPFEIQESDVLGQALTQISERKVTLKVVTRGERAQYLQLANKNALNSITVKQ 368 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 ST+ S L I R+E +D SH MG + V VV G +YR++N Sbjct: 369 STQDSINKRYAQLKATLRLDDIT-RMECFDISHTMGENTVASCVVFDSQGPNTKEYRRYN 427 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + DD A M L +R+++L+ ++ PDV+ +DGGKGQL Sbjct: 428 V--TGITGGDDYAAMEFALNKRYNKLVDEDK---------------IPDVIFIDGGKGQL 470 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRLRD 535 A+ ++ +AKG R G+E + G + ++ P L+ IQ +RD Sbjct: 471 GRAEQYFATWPHAKMPLLVGVAKGTSRKPGLETLLIDGGRKTIPMDSDAPALHLIQHIRD 530 Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E+HRFAI HR +R+K S L+EING+G R++ LL+ G ++ + ++ E L + G Sbjct: 531 ESHRFAIAGHRNKRQKQRTQSLLEEINGVGAKRRQTLLKYLGGMQGVKAANIEQLKKVPG 590 Query: 595 ISKKIACKIYNHFH 608 IS +A KI+NH H Sbjct: 591 ISPDMADKIFNHLH 604 >gi|323142231|ref|ZP_08077065.1| excinuclease ABC, C subunit [Phascolarctobacterium sp. YIT 12067] gi|322413294|gb|EFY04179.1| excinuclease ABC, C subunit [Phascolarctobacterium sp. YIT 12067] Length = 615 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 198/620 (31%), Positives = 325/620 (52%), Gaps = 41/620 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTC 64 +PE PGVY M D +G+V+YVGKA L+ R++SY + +HT ++ M+++I I VT Sbjct: 19 LPEKPGVYLMHDASGKVIYVGKAVVLKNRVRSYFRNLASHTPKVKAMVAKIAEIETIVTS 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +EVEALLLE N+IK+ +PR+NI L+DDK++PY+ +T + P LY R Y+GP Sbjct: 79 SEVEALLLECNLIKKYRPRYNISLKDDKTYPYLKVTMQEDFPRLYVTRRQLRDGARYYGP 138 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 +A A+ T+ L+ F LR+C + RPCL + IKRC PC G IS Y + + Sbjct: 139 YADAGAMHATVKLLRSMFPLRTCRKM---NPDRPCLNYHIKRCLAPCAGYISKADYHKMI 195 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR--- 241 L G L+ + + M +A +E A RD+L A++ + ++ N Sbjct: 196 KSICMVLDGRTTELERDLKQQMQEAADNYAFEEAARLRDQLQAVARLNEAQKAVTNNGGD 255 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-CP 300 MD F L + C+Q F G+ G FFL D T ++++ F++Q+Y + P Sbjct: 256 MDIFGLGQDMTGLCVQLFFVRKGKLIGRDNFFLP-DGGDTPQEVMTAFVKQYYNEATFIP 314 Query: 301 ENILLSEEAEETS--LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 + ++L EE L+E + +V++ +P++G K+ +++ A NA + ++L Sbjct: 315 KEVVLPYLPEEDEKQLIETWLADKAQRRVELLLPQRGVKKDLLKLANENAVKLLNERLRK 374 Query: 359 ----EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + ++ + L H +R++ +D SH G V MVV K YR+ Sbjct: 375 GSLSLKNDLQAAEELQQALGLEHPLERMDCFDISHTQGSETVASMVVFRNGTSSKKDYRR 434 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + + DD M+ V+ RR+ P +V++DGGKG Sbjct: 435 YKIVSAEG-KPDDFKSMQEVVYRRYRDYED------------------LPSLVVIDGGKG 475 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 QLS+A V++ L +++ + ++ +AK + E F + E+++L+ L+ IQR+R Sbjct: 476 QLSSALEVIRGLGLDD-LPVVGLAKREE-----EIFKPHQSESIMLDREGAALHLIQRIR 529 Query: 535 DEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DEAHRFAIT HRK R K+ S LD + GIGP R++ L ++F T+ + +S E LA++E Sbjct: 530 DEAHRFAITYHRKLRGKRNLVSVLDHVEGIGPKRRQELWKAFKTLDAMRAASVEELAAVE 589 Query: 594 GISKKIACKIYNHFHKNTSH 613 G++ A +Y+ F + Sbjct: 590 GMNHAAAQTLYDFFRLDLPE 609 >gi|166712268|ref|ZP_02243475.1| excinuclease ABC subunit C [Xanthomonas oryzae pv. oryzicola BLS256] Length = 618 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 234/607 (38%), Positives = 343/607 (56%), Gaps = 21/607 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+ PGVY+M +LYVGKA L+KR+ SY + R+T M+SQ+ + TVT Sbjct: 17 QLSTAPGVYRMYAGDDTLLYVGKAGALRKRVGSYFNGTPKNARLTSMLSQVARMDVTVTR 76 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE +IK L PR+N+ LRDDKS+PY+L+T +H P + HR +QG YFGP Sbjct: 77 SEAEALLLENQLIKSLSPRYNVSLRDDKSYPYVLLTREH-WPRIALHRGPRAVQGRYFGP 135 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + V V +T++ + + F LRSC DSVFR+R+RPCL +QI RCSGPC G +++ Y E V Sbjct: 136 YTGVTGVRETLSLMHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSGPCVGLVAAPDYAESV 195 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242 A FL G + L E+I ++M QA+ ++E A RD L++L +QN + Sbjct: 196 RRATMFLEGKSDQLGEEIMQSMQQASEALEFERAARLRDLLSSLRSMQNRQYVDGRAADL 255 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D + + AC+ F G+N GT +FF KT+ E + +IL F+ Q+Y + P Sbjct: 256 DVLACATQSSQACVLLLSFRDGRNLGTRSFFPKTNGEDSADEILGAFVSQYYAEHSPPRE 315 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 ILL E ET L+E + +KV + +GE+ + A NA + +L+++ + Sbjct: 316 ILLDREIPETELIEAALSTAAEHKVALKWNVRGERAGYLLLATRNAQLTLVTELTSQSAQ 375 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 + + L KR+E +D SH MG + V VV +G V+ QYR+FN+ + + Sbjct: 376 HARSEALREMLGLAEPFKRVECFDISHTMGEATVASCVVFDASGPVRGQYRRFNI--SGI 433 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD A MR +ERRF + ++ PDV+++DGG GQL+ AQ Sbjct: 434 TPGDDYAAMRQAIERRFRRAVEEN--------------GVLPDVLLIDGGAGQLAQAQAA 479 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 L L VEN + ++ +AKG +R AG E + G L P L FIQ++RDEAHRFAI Sbjct: 480 LADLGVEN-VLLVGVAKGEERRAGHEALIMADGRELRPGAASPALQFIQQVRDEAHRFAI 538 Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR+KA S L++I GIGP R+ LL+ FG + + + +A +EG++ +A Sbjct: 539 TGHRGRRQKARMSSKLEDIPGIGPRRRASLLKHFGGLVGLKAAGEAEIARVEGVNAALAA 598 Query: 602 KIYNHFH 608 +IY + H Sbjct: 599 RIYANLH 605 >gi|307249491|ref|ZP_07531479.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858484|gb|EFM90552.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 610 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 202/618 (32%), Positives = 330/618 (53%), Gaps = 33/618 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+M D ++YVGKA +L+KR+ SY S + + +++ I++I T+T Sbjct: 10 DVPHLPGVYRMYDAKNTIIYVGKAKDLKKRLSSYFRSQLASKKTEALVANIHHIETTITH 69 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N IK +P++N+LLRDDKS+PYIL+T KH+ P + R S + G YFGP Sbjct: 70 SETEALLLEHNYIKENQPKYNVLLRDDKSYPYILLT-KHQHPRITSFRGSKKVAGEYFGP 128 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183 + + AV +T+N LQ+ F +R C DS +++R+RPCL +QI RC PC S +Y Sbjct: 129 YPNAGAVRETLNLLQKLFPIRQCEDSYYKNRSRPCLQYQIGRCLAPCVEGYYSQAEYDNQ 188 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240 V+ + FL G + + E + + M A + D+E+A RD++ ++ +Q + Sbjct: 189 VNLVRLFLQGKDGQVVEHLVQKMENAAQELDFEAAARFRDQIQSVRAVQEKQFVSNERLD 248 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296 +D S+ + +AC+ F G+ G ++F K + + +++ F+ QFY Sbjct: 249 DLDIISIAYQHGIACVHILFVRHGKVLGNRSYFPKVPNNTDLSELADTFVGQFYLQMNQH 308 Query: 297 KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P I++ + E T+L + + +G+K + + A NA + T + Sbjct: 309 RTIPNQIIIDQSLSEVTALANVLSEQAGHKVSIADKNIRGDKSRYLALAKTNAEAALTLQ 368 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L + + L I R+E +D SH MG V VV ENG +K+ YR+F Sbjct: 369 LKQDTHIRQRYDSLKTLLNLAEIK-RMECFDISHTMGNQTVASCVVFDENGPLKSDYRRF 427 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M L +R+ + ++ E+ PD++ +DGGKGQ Sbjct: 428 NIEG--ITGGDDYAAMEQALLKRYGRHLEEEK---------------IPDIIFIDGGKGQ 470 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQ 531 L+ A LNV + + +I +AKG +R AG+E + K + + L P L+ IQ Sbjct: 471 LNRALETFASLNVSWDKRKPLLIGVAKGVERKAGLETLLISKWDKEIHLPPDSPALHLIQ 530 Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AIT HRK+R+KA S L+ I G+G R++ LL+ G ++ + ++ E + Sbjct: 531 HIRDESHNHAITGHRKKRQKAFTESGLESIAGVGAKRRQALLKYLGGMQGVKSATLEEIQ 590 Query: 591 SIEGISKKIACKIYNHFH 608 S+ GISK++A I++ Sbjct: 591 SVPGISKQLAEVIFDTLQ 608 >gi|84496559|ref|ZP_00995413.1| excinuclease ABC subunit C [Janibacter sp. HTCC2649] gi|84383327|gb|EAP99208.1| excinuclease ABC subunit C [Janibacter sp. HTCC2649] Length = 655 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 193/634 (30%), Positives = 317/634 (50%), Gaps = 30/634 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 ++P PGVY+ D GRV+YVGKA +L+ R+ SY R M+ ++ +T Sbjct: 13 EIPTDPGVYRFRDKDGRVIYVGKAKSLRPRLSSYFQDVGMLHPRTASMVMAGASVEWTTV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE + IK PRFN+ RDDKS+PY+ +T + P R + YFG Sbjct: 73 LTEVEALQLEYSWIKEFDPRFNVKYRDDKSYPYLAVTLGEEYPRAQVMRGAKRKGTRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P+A A+ +T++ R F +R+C+ VF+ RPCLL I +CS PC G + ++ + Sbjct: 133 PYAHAWAIRETLDQALRVFPIRTCSSGVFKRASQVGRPCLLGYIDKCSAPCVGRVDADAH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + E F++G + +++ R M A+ + ++E+A RD + AL + + ++ Sbjct: 193 RQIAEEFCDFMAGESTKFMKRLERQMRDASDELEFETAARLRDDIGALQRVLEKSAVVFG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294 D F+L ++ +Q G+ RG + + T +++ + L+Q Y Sbjct: 253 DGTDADVFALADDELEVAVQVFHVRGGRIRGQRGWVAE-KEFETVPEVVGHLLQQLYGGE 311 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 + P +L+ ++ + G +V + VP++G+K+ ++E NA +S + Sbjct: 312 EGESVPREVLVPVLPDDADSMSEWLSGLRGSRVDLRVPQRGDKKTLMETVERNATQSLAR 371 Query: 355 KLS----TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + L+ + AL P RIE YD SH+ G VG MVV + K Sbjct: 372 HKVARAGDLTARSQALQQLQEFLALDESPLRIECYDISHVQGTQVVGSMVVFEDGLARKG 431 Query: 411 QYRKFNLHPNDVK-----TQDDCAMMRMVLERRFSQLIKNEENLNFHPKK--QEYSFPSW 463 +YR+F + + T DD A M VL RRF + +K+ + ++ + F Sbjct: 432 EYRRFIVRGANDDEGAAVTIDDTAAMHEVLTRRFRRYLKDRDEPQGRDEETGRPTRFAYP 491 Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMR 523 P +V++DGG Q++AA ++ L + + + ++ +AK + E + + +VL Sbjct: 492 PQLVVVDGGLPQVNAAARAIEDLGIVD-VAVVGLAKRLE-----EVWVPGQDFPIVLPRT 545 Query: 524 DPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMIS 582 LY +QRLRDEAHRFAIT HR+RR KA S LD I G+G ++++ LL+ FG+VK I Sbjct: 546 SEGLYLLQRLRDEAHRFAITFHRQRRSKAMTNSALDGIPGLGDVKQKSLLRHFGSVKRIR 605 Query: 583 RSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616 +S + L + GI ++A I PT Sbjct: 606 AASLDELVEVAGIGPRLAETIQREL-TGAPAEPT 638 >gi|289669008|ref|ZP_06490083.1| excinuclease ABC subunit C [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 618 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 230/607 (37%), Positives = 338/607 (55%), Gaps = 21/607 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+ PGVY+M +LYVGKA L+KR+ SY + R+T M+SQ+ + TVT Sbjct: 17 QLSTAPGVYRMYAGDDTLLYVGKAGALRKRVGSYFNGTPKNARLTSMLSQVARMDVTVTR 76 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE +IK L PR+N+ LRDDKS+PY+L+T + P + HR +QG YFGP Sbjct: 77 SEAEALLLENQLIKSLSPRYNVSLRDDKSYPYVLLT-REDWPRIALHRGPRAVQGRYFGP 135 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + V V +T++ + + F LRSC DSVFR+R+RPCL +QI RCSGPC +++ Y E V Sbjct: 136 YTGVTGVRETLSLMHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSGPCVDLVAAPDYAESV 195 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242 A FL G + L E+I ++M QA+ ++E A RD L++L +QN + Sbjct: 196 RRATMFLEGKSDQLGEEIMQSMQQASEALEFERAARLRDLLSSLRSMQNRQYVDGRAADL 255 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D + + AC+ F G+N GT +FF KT+ E + +IL F+ Q+Y + P Sbjct: 256 DVLACATQSSQACVLLLSFRDGRNLGTRSFFPKTNGEDSADEILGAFVSQYYAEHSPPRE 315 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 ILL E E L+E + +KV + +GE+ + A NA + +L+++ + Sbjct: 316 ILLDREIPEAELIEAALSTAAEHKVALKWNVRGERAGYLLLATRNAQLTLVTELTSQSAQ 375 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 + + L KR+E +D SH MG + V VV +G V+ QYR+FN+ Sbjct: 376 HARSEALREMLGLAEPVKRVECFDISHTMGEATVASCVVFDASGPVRGQYRRFNISGT-- 433 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD A MR +ERRF + ++ PD++++DGG GQL+ AQ Sbjct: 434 TPGDDYAAMRQAIERRFRRAVEEN--------------GVLPDLLLIDGGAGQLAQAQAA 479 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 L L VEN + ++ +AKG +R AG E + G L P L FIQ++RDEAHRFAI Sbjct: 480 LADLGVEN-VLLLGVAKGEERRAGHEALIMADGRELRPGAASPALQFIQQVRDEAHRFAI 538 Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR+KA S L++I GIGP R+ LL+ FG + + + +A +EG++ +A Sbjct: 539 TGHRGRRQKARMTSKLEDIPGIGPRRRASLLKHFGGLVGLKAAGEAEIARVEGVNAALAA 598 Query: 602 KIYNHFH 608 +IY + H Sbjct: 599 RIYANLH 605 >gi|310767246|gb|ADP12196.1| excinuclease ABC subunit C [Erwinia sp. Ejp617] Length = 610 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 214/618 (34%), Positives = 341/618 (55%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D AG V+YVGKA +L+KR+ SY N + + +++ I I TV Sbjct: 11 LKTVTSQPGVYRMYDSAGTVIYVGKAKDLKKRLASYFRGNLASRKTEALVALIEQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+PYI ++ H P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLSADH-HPRLASHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T++ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC ++ E+Y Sbjct: 130 GPFPNGYAVRETLSLLQKIFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVTEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + + FLSG + + ++ M QA+ + +E A RD++ A+ + Sbjct: 190 RQIDYVRLFLSGKDDQVLNQLVTRMEQASRELRFEEAGRLRDQIQAVRRVTEKQFVSNQG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + MD + + +AC+ F G+ G+ ++F K + A+++ F+ QFY Sbjct: 250 DDMDVIGVSFDSGMACLHVLFIRQGKVLGSRSYFPKVPGGTELAEVVQTFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P +IL+ E LL S + G +V I +G++ + ++ A NA + T + Sbjct: 310 ARTLPADILIDFTLPEKELLAASLTELAGRRVTIQSKPRGDRARYLKLARTNAATALTSR 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L+ + L + + LP I R+E +D SH MG V VV NG ++++YR++ Sbjct: 370 LAQHSTIHQRLAELAQTLKLPTIR-RMECFDISHTMGEQTVASCVVFDTNGPLRSEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + + DD A M VL RR+ + I+ + PDV+++DGGKGQ Sbjct: 429 NI--SGITPGDDYAAMNQVLRRRYGKAIEQSK---------------IPDVIVIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V ++ ++ +AKG R AG+E F+ +GE L P L+ IQ Sbjct: 472 LAQAKEVFAQLDVAWDKSHPLLLGVAKGSDRKAGLETLFLEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RD++H AIT HR +R K S L+ I GIGP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDDSHNHAITGHRNKRAKVKNTSALETIEGIGPKRRQMLLKYMGGLQPLINASMEEIA 591 Query: 591 SIEGISKKIACKIYNHFH 608 + GIS +A KI++ Sbjct: 592 GVPGISHALAEKIFHALK 609 >gi|270159194|ref|ZP_06187850.1| excinuclease ABC subunit C [Legionella longbeachae D-4968] gi|269987533|gb|EEZ93788.1| excinuclease ABC subunit C [Legionella longbeachae D-4968] Length = 631 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 214/622 (34%), Positives = 344/622 (55%), Gaps = 34/622 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P PG+Y+MLD +G VLYVGKA NL+KR+ SY + + +++QI +I +VT Sbjct: 24 KLPNEPGIYRMLDESGAVLYVGKAANLKKRVTSYFNKQKTGIKTRSLVTQIASIEISVTR 83 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI-QGSYFG 123 +E EALLLE+N+IK LKP++N+LLRDDKS+PYI +++ + P + +R G +FG Sbjct: 84 SETEALLLESNLIKTLKPKYNVLLRDDKSYPYIHLSNHPQFPRIESYRSKKKPVSGDFFG 143 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ S V++TI ++Q+ F +R+C DS F R+RPCL +QIKRC+ PC IS E Y Sbjct: 144 PYPSSGTVKETIVTIQKVFKIRNCRDSYFNARSRPCLQYQIKRCTAPCVNYISPEDYKRS 203 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYNR 241 V +A +FL G + +++A+ M++A + ++E A + RD++ L +Q + Sbjct: 204 VQDAMRFLQGKCQLILDELAKRMDKAVSELNFEEAALLRDQIKCLRLVQEQQGILQLQGD 263 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ---------ILSYFLRQ 292 D ++ N AC+Q GQ + ++F + + I S F+ Sbjct: 264 ADAIAIEVNPGFACVQCVTIRDGQILSSRSYFPSLPQYGLDEELSMETLWQQIFSAFIGF 323 Query: 293 FYTDKP--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR 350 +Y D P I+ + + L+ + +Q G K+ V +G K + ++ AL N Sbjct: 324 YYLDASEKIPALIITNHPVDNQKTLQEALSQQRGKSCKLQVNPRGVKLRWMDFALNNLRV 383 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 S + ++ + + ++ K L +R+E +D SH +G + V VV + G N Sbjct: 384 SVAEYITKHSTMRSRFQELEKFLGLKEPIERMECFDISHTLGEATVASCVVFEQEGPCPN 443 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YR+FN+ + + DD A M + RRF +L++ + S PDV+I+D Sbjct: 444 LYRRFNI--DGITPGDDYAAMEQAITRRFKRLVETQ---------------SLPDVLIID 486 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYF 529 GGKGQ++ AQ L LN+ + I ++ IAKGP R AG EK V L L L+ Sbjct: 487 GGKGQVAVAQKALLSLNISSVI-LLGIAKGPSRKAGWEKLILVHDSLELSLPDDSRALHL 545 Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 +Q +RDEAHRFAIT HRK+R KK S L++I G+G R++ LL FG ++ ++++ E Sbjct: 546 LQHIRDEAHRFAITAHRKKRQKKQMDSVLEDIEGVGRKRRQALLHRFGGIRELAKAPLEE 605 Query: 589 LASIEGISKKIACKIYNHFHKN 610 +A ++GI++ +A +I+ FH Sbjct: 606 IAKVQGINEHLAKRIFQFFHGE 627 >gi|260772979|ref|ZP_05881895.1| excinuclease ABC subunit C [Vibrio metschnikovii CIP 69.14] gi|260612118|gb|EEX37321.1| excinuclease ABC subunit C [Vibrio metschnikovii CIP 69.14] Length = 609 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 210/619 (33%), Positives = 332/619 (53%), Gaps = 31/619 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M + V+YVGKA +L+KR+ SY S + + ++S IN I TV Sbjct: 10 LKNVTHQPGVYRMYNTEAEVIYVGKAKDLKKRLSSYFRSKVDSEKTRALVSHINKIDVTV 69 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EAL+LE N IK+ P++N+LLRDDKS+PYI I+ HK P L HR + +G YF Sbjct: 70 THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFIS-AHKHPRLSAHRGAKKRRGEYF 128 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GP+ AV +T++ +Q+ F +R C D+V+ +R RPCL++QI RC+ PC I+ E Y Sbjct: 129 GPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRVRPCLMYQIGRCAAPCVKSLINDEDYA 188 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 E V+ + FL G + + E + M QA+ +E A RD++ A+ +Q + Sbjct: 189 ELVNCVRLFLQGKDKQVLEMLIGKMEQASQALRFEDAAKFRDQIQAIRRVQEQQFVAEDS 248 Query: 242 MDC---FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D K LACI G+ G+ +FF K + + + ++ FL Q+Y + Sbjct: 249 QDDLDVLGFAQEKGLACIHILMIRQGKVLGSRSFFPKIPANTESQEVFESFLSQYYLNHT 308 Query: 299 ----CPENILLSE-EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 P I+L++ +ET L+++ + G+ V V G + + ++ + NA + T Sbjct: 309 DSRVVPSRIILNQGLLKETKPLQLALRELAGHNVHFHVSPTGTRGQYLKLSNTNALSAMT 368 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 KL+ +++ Q + + + + +I R+E +D SH MG S V VV + G +K +YR Sbjct: 369 SKLNHKMTIQQRINELQRVLGIENIA-RMECFDISHTMGESTVASCVVFNQEGPIKAEYR 427 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 +FN+ + DD A M LERR+++ + ++ PDV+ +DGGK Sbjct: 428 RFNI--TGITGGDDYAAMAQALERRYAKQLDVDK---------------IPDVIFIDGGK 470 Query: 474 GQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GQL+ A ++ + + R +I IAKG R G+E +G+ L P L+ IQ Sbjct: 471 GQLNRALQIITQCWQDWPKRPQLIGIAKGITRKPGLETLITTEGDEFHLPSDAPALHLIQ 530 Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AIT HR +R K S L+ I G+GP R++ LL+ G ++ I R++ E +A Sbjct: 531 HIRDESHNHAITGHRAKRGKTRRTSTLEGIEGVGPKRRQALLKYMGGLQEIKRATVEEIA 590 Query: 591 SIEGISKKIACKIYNHFHK 609 + GIS +A IY Sbjct: 591 KVPGISHSLAEIIYQALKP 609 >gi|297618023|ref|YP_003703182.1| excinuclease ABC, C subunit [Syntrophothermus lipocalidus DSM 12680] gi|297145860|gb|ADI02617.1| excinuclease ABC, C subunit [Syntrophothermus lipocalidus DSM 12680] Length = 598 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 206/615 (33%), Positives = 323/615 (52%), Gaps = 30/615 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 ++P+ PGVY D G+V+YVGKA L+ R++SY S + ++ M++++ + + VT Sbjct: 7 KVPQKPGVYLFKDERGQVIYVGKAKALRNRLRSYFQSPSQLLPKVRAMMAKVRDFDYVVT 66 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 EVEAL+LE+N+IK +PR+NI+LRDDKS+PY+ +T + P L R+ YFG Sbjct: 67 ANEVEALILESNLIKSYQPRYNIMLRDDKSYPYLKVTMAEEYPRLVIAREKKDGVSRYFG 126 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P++ V A+ +TI L F +R+C R RPCL I RC PCTGEIS E+YM Sbjct: 127 PYSDVGALRQTIRLLTGIFPVRTC--RTLRLGRRPCLKRDIGRCLAPCTGEISREEYMRV 184 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240 V + +FL G + L + M +A K ++E A RD + A+ + Sbjct: 185 VADVCRFLEGDHAGLLAGLEEEMREAADKLEFEKAARLRDTIRAVEKVSEKQKVVLENPW 244 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-C 299 +D + G+ G TF L+T +I++YF++++Y++ P Sbjct: 245 ELDVMAFAPVNREMLGLVFKVRAGRVVGKETFELRTVMGEGLKEIVAYFIQRYYSESPDL 304 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P IL+ E E +LE + +V I VP +G KR+++ A NA +K Sbjct: 305 PREILIPVEPEGREVLETWLSEMKKARVTIKVPHRGTKRQLMVMAEENARLLAEEKARAG 364 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 +L + +L +P RIE YD SH+ G VG M V+ K+ YR+FNL Sbjct: 365 EG-HGVLTALAQVLSLETVPFRIECYDVSHLSGEGTVGSMAVLTAGKKDKSAYRRFNLGK 423 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 N DD + +L RR ++ + + +F PD+V++DGG GQ++ A Sbjct: 424 NI---NDDYQALSDILRRRLTRGQEGD-----------PAFLPMPDLVVIDGGLGQVNVA 469 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 Q V++++ + + ++ +AK + E +F + E L L R L+ +Q LRDEAHR Sbjct: 470 QRVMQEMGIT--VPVVGLAKKNE-----EIYFPGQREPLRLPRRHQALHLLQSLRDEAHR 522 Query: 540 FAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FA+T RKRR + S LD I GIG RK LLQ+FG+V I ++PE L+ ++G+++ Sbjct: 523 FAVTYQRKRRSRNITQSELDRIAGIGEKRKLALLQAFGSVDAIKNATPEELSRVKGMNRT 582 Query: 599 IACKIYNHFHKNTSH 613 +A K++ F+ Sbjct: 583 VAEKVFAFFNPKGDG 597 >gi|78065727|ref|YP_368496.1| excinuclease ABC subunit C [Burkholderia sp. 383] gi|90111060|sp|Q39I64|UVRC_BURS3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|77966472|gb|ABB07852.1| Excinuclease ABC subunit C [Burkholderia sp. 383] Length = 677 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 216/664 (32%), Positives = 330/664 (49%), Gaps = 65/664 (9%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D AG VLYVGKA +L+KR+ SY + RI M+++I I TVT Sbjct: 19 QLPHMPGVYRYYDTAGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H+ P + +R S Q YFGP Sbjct: 79 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-AHRFPRMAYYRGSVDKQNQYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RC+ PC G IS E Y V Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVGAISDEDYAIDV 197 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 A +FL G + +++ + M+ + +E A R+++++L+ + + Sbjct: 198 SNAARFLLGRQSEVMKELEQKMHAFAAELKFEQAAAVRNQMSSLATVLHQQAIEVGSDSD 257 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS-----------EST--------- 281 D ++ C+ G++ G +F + + Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPTHVESALTLAEGGIGDESELAEAVDAP 317 Query: 282 -----------------------NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEIS 318 A++L F+ Q Y P +++S LLE+ Sbjct: 318 ADAMPDLPAEEPGRARSDAAASVEAEVLDAFIAQHYLGNRVPPVLVVSHAPASRDLLEL- 376 Query: 319 FFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKK---FAL 375 +Q G+KV + QG++R + A NA + + LS + S Q + + Sbjct: 377 LSEQAGHKVSLVRQPQGQRRAWLSMAEQNAQIALMRLLSEQGSQQARTRALAETLSYECD 436 Query: 376 PHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVL 435 RIE +D SH MG + VV + +YR++N+ + DD A MR VL Sbjct: 437 DLTTLRIECFDISHTMGEATQASCVVYHHHKMQSGEYRRYNI--TGITPGDDYAAMRQVL 494 Query: 436 ERRFSQLIK---------NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486 RR+ ++++ + ++ +Q + P++V++DGGKGQ+ A+ V +L Sbjct: 495 TRRYEKMVEQAAQAAAADDAAGIDGESTRQAEASSLLPNIVLIDGGKGQVEIARQVFTEL 554 Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTH 545 ++ + ++ +AKG R G+E G L L L + ++RDEAHRFAIT Sbjct: 555 GLDTSM-LVGVAKGEGRKVGLETLVFADGRTPLELGKESAALMVVAQIRDEAHRFAITGM 613 Query: 546 RKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 R +R KA S L+E+ G+G R++ LL FG ++ + +S E LAS+EGIS +A +IY Sbjct: 614 RAKRAKARQTSRLEELEGVGAKRRQRLLARFGGLRGVVAASVEELASVEGISHALAEQIY 673 Query: 605 NHFH 608 H Sbjct: 674 KQLH 677 >gi|119367819|sp|Q1Q8B0|UVRC_PSYCK RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C Length = 614 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 199/614 (32%), Positives = 314/614 (51%), Gaps = 29/614 (4%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+ML G +LYVGKA +L+ R+ SY + ++++I+NI +T Sbjct: 22 QRLPNLPGVYKMLGKNGDILYVGKAKSLKSRVNSYFAKTIDHPKTRALVARIHNIETIIT 81 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-STIQGSYF 122 +E EALLLE N+IK +P +N+LLRDDKS+ Y+ I+ P L R + +G +F Sbjct: 82 RSETEALLLEQNLIKEYRPPYNVLLRDDKSYLYVFISADKPYPRLAYGRGKGNHQKGRFF 141 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF S A ++T+ +Q+ F +R C ++ F+ R RPCL +QIKRC PC G +S E+Y E Sbjct: 142 GPFPSAHAAKETLVLMQKMFQMRQCTNTFFKQRKRPCLEYQIKRCRAPCVGLVSPEEYSE 201 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--N 240 V+ +FL G + ++ + M + + D+E A+ +RD+L+ L +Q Sbjct: 202 DVNNTIRFLKGDSSDIHTALIEKMEASAEELDFEKAVFYRDQLSMLREVQAKQAVYTVQG 261 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KP 298 D ++ + C+ G+ G +F DS A LS F+ FY Sbjct: 262 EADVIAIASQGGMTCVNVLTVRGGRVLGGKNYFPDVDSSEPLADNLSAFITSFYFQVTDD 321 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P I+LS+E + + + +G KV I + + + ++ A +N + + KL Sbjct: 322 LPAEIILSDELPDQLAVSEALATHFGSKVVIKTSVREHRAEWLDLAKLNTNNALKTKLGD 381 Query: 359 EISHQMILKDFTK--KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + RIE +D SH MG + +G VV + G + YR++ Sbjct: 382 YLELHARFGALKDVLTEVTDRTIDRIECFDISHTMGEATIGSCVVFDQGGSRRRDYRQYA 441 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 +H + DD A M+ VL RR+ + PD++++DGGKGQL Sbjct: 442 IHD--IVGGDDYAAMKQVLTRRYKK-------------------QPLPDLLLIDGGKGQL 480 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 A+ VL +L + +IS+AKG R AG+E E L L M L+ + +RDE Sbjct: 481 GIAKEVLTELGILGDTLLISVAKGEGRKAGLEVLHFIDHEPLDLPMDSKALHLLMHIRDE 540 Query: 537 AHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 AHRFAIT HRK+R K+ + S L+ I G+G R+R LL FG ++ + +S + LA ++GI Sbjct: 541 AHRFAITAHRKKRDKRRSSSVLEVIPGLGEKRRRDLLNHFGGMQQLLGASQQELAGVQGI 600 Query: 596 SKKIACKIYNHFHK 609 +A +Y H+ Sbjct: 601 GPVLAKTVYKVLHE 614 >gi|302669467|ref|YP_003829427.1| excinuclease ABC C subunit UvrC [Butyrivibrio proteoclasticus B316] gi|302393940|gb|ADL32845.1| excinuclease ABC C subunit UvrC [Butyrivibrio proteoclasticus B316] Length = 623 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 202/622 (32%), Positives = 316/622 (50%), Gaps = 21/622 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M D ++YVGKA NL R++SY +N +I M+ I + Sbjct: 9 ELKKLPNKPGVYIMRDENDTIMYVGKAINLHNRVRSYFRANIGRGPQIDQMVKLIARFEY 68 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK PR+N LL+DDK++PYI +T P + R + Sbjct: 69 IVTDSELEALVLENNLIKENSPRYNTLLKDDKTYPYIKVTVSEDYPRVLFSRLMKKDKSR 128 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT--RPCLLFQIKRCSGPCTGEISSE 178 YFGPF S AV+ TI+ + + + LR+C + R RPCL + +K+C GPCTG IS E Sbjct: 129 YFGPFTSAAAVKDTIDLINKIYGLRTCNRVLPRDIGLERPCLNYHMKQCCGPCTGAISKE 188 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYE---SAIIHRDRLAALSHIQNHN 235 +Y + + A FL+G + + + M A+ + D+E + ++ Q Sbjct: 189 EYRKRIDGALDFLNGNYTVIIKDLQDKMEAASEELDFENAAKYRDLLSSVKVVAQKQKMT 248 Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 DS D ++ + A +Q F G+ G F++ SE+ A+IL F++QFY Sbjct: 249 DSSMEDKDIVAIASDDKDAVVQVFFVRDGRLIGREHFYMTHVSENPQAEILLNFVKQFYA 308 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351 P P ++L E E+ ++E ++ G +V ITVP++G+K K++E A NA Sbjct: 309 GTPFIPRELMLPEPIEDMEIIEKWLTQRKGSRVYITVPERGQKEKLMELAAQNAELVLSK 368 Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E +K+ + R+E YD S+I G + VG MVV + K+ Sbjct: 369 DKERIKREEGRTIGAVKEIENLLGIK-GLNRMEAYDISNISGFANVGSMVVYEKGKPKKS 427 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP-KKQEYSFPSWPDVVIL 469 YRKF + V DD A M VL RR I+ +L Q SF +PD++++ Sbjct: 428 DYRKFRIKS--VAGPDDYACMHEVLTRRLLHGIEERHDLEVRDIDAQYGSFTKFPDLILM 485 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGG+GQ++ VL +L + I + + K L ++ R Sbjct: 486 DGGRGQVNICLQVLDELGIH--IPVCGMVKDDNHRTRG---LYYNNVELPIDTRSEGFKL 540 Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 I R++DEAHRFAI HR R K+ S LD+I G+GP R++ L+++F +++ I +S E Sbjct: 541 ITRIQDEAHRFAIEYHRSLRSKSQVKSSLDDIPGVGPSRRKALMRNFKSIEDIRNASVEE 600 Query: 589 LASIEGISKKIACKIYNHFHKN 610 L+ + I + A +IY+ FH Sbjct: 601 LSQVPEIPESTARQIYDFFHSE 622 >gi|294625331|ref|ZP_06703967.1| excinuclease ABC subunit C [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294663856|ref|ZP_06729305.1| excinuclease ABC subunit C [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600349|gb|EFF44450.1| excinuclease ABC subunit C [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292606374|gb|EFF49576.1| excinuclease ABC subunit C [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 619 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 231/607 (38%), Positives = 339/607 (55%), Gaps = 21/607 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+ PGVY+M +LYVGKA L+KR+ SY + R+T M+SQ+ + TVT Sbjct: 17 QLSTAPGVYRMYAGDDTLLYVGKAGALRKRVGSYFNGTPKNARLTSMLSQVARMDVTVTR 76 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE +IK L PR+N+ LRDDKS+PY+L+T + + P + HR +QG YFGP Sbjct: 77 SEAEALLLENQLIKSLSPRYNVSLRDDKSYPYVLLT-REQWPRIALHRGPRAVQGRYFGP 135 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + V V +T++ + + F LRSC DSVFR+R+RPCL +QI RCSGPC ++ Y E V Sbjct: 136 YTGVTGVRETLSLMHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSGPCVDLVAPSDYAESV 195 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242 A FL G + L E+I +M QA+ ++E A RD L++L +QN + Sbjct: 196 RRATMFLEGKSDQLGEEIMHSMQQASEALEFERAARLRDLLSSLRSMQNRQYVDGRAADL 255 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D + + AC+ F G+N GT +FF KT+ E + +IL F+ Q+Y + P Sbjct: 256 DVLACATQSSQACVLLLSFRDGRNLGTRSFFPKTNGEDSADEILGAFVSQYYAEHSPPRE 315 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 ILL E E L+E + +KV + +GE+ + A NA + +L+++ + Sbjct: 316 ILLDREIPEAELIEAALSTAAEHKVALKWNVRGERAGYLLLATRNAQLTLVTELTSQSAQ 375 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 + + L KR+E +D SH MG + V VV +G V+ QYR+FN+ + + Sbjct: 376 HARSEALREMLGLAEPVKRVECFDISHTMGEATVASCVVFDASGPVRGQYRRFNI--SGI 433 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD A MR +ERRF + ++ PDV+++DGG GQL+ AQ Sbjct: 434 TPGDDYAAMRQAIERRFRRAVEEN--------------GVLPDVLLIDGGAGQLAQAQAA 479 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 L L VEN + ++ +AKG +R AG E + G L P L FIQ++RDEAHRFAI Sbjct: 480 LADLGVEN-VLLVGVAKGEERRAGHEALIMADGRELRPGAASPALQFIQQVRDEAHRFAI 538 Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR+KA S L++I GIGP R+ LL+ FG + + + +A +EG++ +A Sbjct: 539 TGHRGRRQKARMTSKLEDIPGIGPRRRASLLKHFGGLVGLKAAGEAEIARVEGVNAALAA 598 Query: 602 KIYNHFH 608 +IY + H Sbjct: 599 RIYANLH 605 >gi|304409201|ref|ZP_07390822.1| excinuclease ABC, C subunit [Shewanella baltica OS183] gi|307303204|ref|ZP_07582959.1| excinuclease ABC, C subunit [Shewanella baltica BA175] gi|304353022|gb|EFM17419.1| excinuclease ABC, C subunit [Shewanella baltica OS183] gi|306913564|gb|EFN43986.1| excinuclease ABC, C subunit [Shewanella baltica BA175] Length = 610 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 194/611 (31%), Positives = 324/611 (53%), Gaps = 28/611 (4%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 GVY+M D+ V+YVGKA +L+KR+ SY N + ++S I++I T+T +E Sbjct: 17 SSAGVYRMYDVKNDVIYVGKAKDLKKRLTSYFRKNLANVKTQALVSHIHHIDVTLTHSET 76 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 +ALLLE + IK+ P++N+LLRDDKS+PYIL++ +H+ P L HR +G YFGP+ + Sbjct: 77 DALLLENDYIKQYMPKYNVLLRDDKSYPYILLS-QHEHPRLAYHRGPQREKGHYFGPYPN 135 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 AV ++++ +Q+ F +R C D ++ R+RPCL +Q+ RCS PC G++S+ Y E V A Sbjct: 136 GGAVRESLHLMQKLFPIRQCDDLYYKSRSRPCLQYQLSRCSAPCVGKVSNADYDEQVKLA 195 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCF 245 FL G + + + M A ++ YE A RD++ AL + + N MD Sbjct: 196 SLFLKGKDQQVISALVDKMELAAERQAYEQAARFRDQIMALRKVAEQQEVSNNKGDMDVI 255 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPE 301 ++++ +AC F G+ G+ +++ +++ ++L F+ QFY + + P+ Sbjct: 256 GVHYSSGIACFHLLFIREGKIFGSRSYYPSVPAQTDMDEVLRSFILQFYLNADIQRTIPK 315 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 +++S EE LE + + K I + ++ + A+ NA + +LS + + Sbjct: 316 EVVISHNFEELHELEAAVSEALDKKFSIKTNVRADRASFLRLAVTNATNAVVTRLSHKNT 375 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 + + L +R+E +D SH MG S V VV G K +YR++N+ Sbjct: 376 VEQRFVLLEEILELSTPIQRMECFDISHTMGESTVASCVVFNREGPHKGEYRRYNIEG-- 433 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 + DD A M+ + RRF ++ + PD++ +DGG GQL AQ Sbjct: 434 ITPGDDYAAMKQAVSRRFDKIEAGGK---------------IPDILFIDGGLGQLRIAQK 478 Query: 482 VLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAH 538 ++ + ++++ +I +AKG R G+E + E + L P L+ IQ +RDE+H Sbjct: 479 IVDEKFVHLDKAPQLIGVAKGEGRKPGLETLILGDTETSFSLEGDSPALHLIQHIRDESH 538 Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAI HR RR+K S L+ I GIGP R++ LLQ G ++ + +S L + GIS Sbjct: 539 RFAIAGHRNRRQKTRNTSTLESIPGIGPKRRKALLQHLGGLQEVKGASVAELVKVPGISI 598 Query: 598 KIACKIYNHFH 608 ++A I++ Sbjct: 599 EMAQTIHDALR 609 >gi|21242831|ref|NP_642413.1| excinuclease ABC subunit C [Xanthomonas axonopodis pv. citri str. 306] gi|81802352|sp|Q8PKS0|UVRC_XANAC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|21108318|gb|AAM36949.1| excinuclease ABC subunit C [Xanthomonas axonopodis pv. citri str. 306] Length = 619 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 231/607 (38%), Positives = 340/607 (56%), Gaps = 21/607 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+ PGVY+M +LYVGKA L+KR+ SY + R+T M+SQ+ + TVT Sbjct: 17 QLSTAPGVYRMYAGDDTLLYVGKAGALRKRVGSYFNGTPKNARLTSMLSQVARMDVTVTR 76 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE +IK L PR+N+ LRDDKS+PY+L+T + + P + HR +QG YFGP Sbjct: 77 SEAEALLLENQLIKSLSPRYNVSLRDDKSYPYVLLT-REQWPRIALHRGPRAVQGRYFGP 135 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + V V +T++ + + F LRSC DSVFR+R+RPCL +QI RCSGPC +++ Y E V Sbjct: 136 YTGVTGVRETLSLMHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSGPCVDLVAAPDYAESV 195 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242 A FL G + L E+I +M QA+ ++E A RD L++L +QN + Sbjct: 196 RRATMFLEGKSDQLGEEIMHSMQQASEALEFERAARLRDLLSSLRSMQNRQYVDGRAADL 255 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D + + AC+ F G+N GT +FF KT+ E + +IL F+ Q+Y + P Sbjct: 256 DVLACATQSSQACVLLLSFRDGRNLGTRSFFPKTNGEDSADEILGAFVSQYYAEHSPPRE 315 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 ILL E E L+E + +KV + +GE+ + A NA + +L+++ + Sbjct: 316 ILLDREIPEAELIEAALSTAAEHKVALKWNVRGERAGYLLLATRNAQLTLVTELTSQSAQ 375 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 + + L KR+E +D SH MG + V VV +G V+ QYR+FN+ + + Sbjct: 376 HARSEALRELLGLAEPVKRVECFDISHTMGEATVASCVVFDASGPVRGQYRRFNI--SGI 433 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD A MR +ERRF + ++ PDV+++DGG GQL+ AQ Sbjct: 434 TPGDDYAAMRQAIERRFRRAVEEN--------------GVIPDVLLIDGGAGQLAQAQAA 479 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 L L VEN + ++ +AKG +R AG E + G L P L FIQ++RDEAHRFAI Sbjct: 480 LADLGVEN-VLLVGVAKGEERRAGHEALIMADGRELRPGAASPALQFIQQVRDEAHRFAI 538 Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR+KA S L++I GIGP R+ LL+ FG + + + +A +EG++ +A Sbjct: 539 TGHRGRRQKARMTSKLEDIPGIGPRRRASLLKHFGGLVGLKAAGEAEIARVEGVNAALAA 598 Query: 602 KIYNHFH 608 +IY + H Sbjct: 599 RIYANLH 605 >gi|46143849|ref|ZP_00133981.2| COG0322: Nuclease subunit of the excinuclease complex [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207765|ref|YP_001052990.1| excinuclease ABC subunit C [Actinobacillus pleuropneumoniae L20] gi|229557974|sp|A3MYZ9|UVRC_ACTP2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|126096557|gb|ABN73385.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 610 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 199/618 (32%), Positives = 329/618 (53%), Gaps = 33/618 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+M D ++YVGKA +L+KR+ SY S + + +++ I++I T+T Sbjct: 10 DVPHLPGVYRMYDAKNTIIYVGKAKDLKKRLSSYFRSQLASKKTEALVANIHHIETTITH 69 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N IK +P++N+LLRDDKS+PYIL+T KH+ P + R S + G YFGP Sbjct: 70 SETEALLLEHNYIKENQPKYNVLLRDDKSYPYILLT-KHQHPRITSFRGSKKVAGEYFGP 128 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183 + + AV +T+N LQ+ F +R C DS +++R+RPCL +QI RC PC S +Y Sbjct: 129 YPNAGAVRETLNLLQKLFPIRQCEDSYYKNRSRPCLQYQIGRCLAPCVEGYYSQAEYDNQ 188 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240 V+ + FL G + + E + + M A + D+E+A RD++ ++ +Q + Sbjct: 189 VNLVRLFLQGKDGQVVEHLVQKMENAAQELDFEAAARFRDQIQSVRAVQEKQFVSNERLD 248 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296 +D S+ + +AC+ F G+ G ++F K + + +++ F+ QFY Sbjct: 249 DLDIISIAYQHGIACVHILFVRHGKVLGNRSYFPKVPNNTDLSELADTFVGQFYLQMNQH 308 Query: 297 KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P I++ + E T+L + + +G+K + + A NA + T + Sbjct: 309 RTIPNQIIIDQSLSEVTALANVLSEQAGHKVSIADKNIRGDKSRYLALAKTNAEAALTLQ 368 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L + + L I R+E +D SH MG V VV +NG +K+ YR+F Sbjct: 369 LKQDTHIRQRYDSLKALLNLAEIK-RMECFDISHTMGNQTVASCVVFDKNGPLKSDYRRF 427 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M L + + + ++ E+ PD++ +DGGKGQ Sbjct: 428 NIEG--ITGGDDYAAMEQALLKLYDRNLEEEK---------------IPDIIFIDGGKGQ 470 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQ 531 L+ A LNV + + ++ +AKG +R AG+E + K + + L P L+ IQ Sbjct: 471 LNRALETFTSLNVSWDKRKPLLVGVAKGVERKAGLETLLISKWDKEIHLPPDSPALHLIQ 530 Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AIT HRK+R+KA S L+ I G+G R++ LL+ G ++ + ++ E + Sbjct: 531 HIRDESHNHAITGHRKKRQKAFTESGLESIAGVGAKRRQALLKYLGGMQGVKAATLEEIQ 590 Query: 591 SIEGISKKIACKIYNHFH 608 S+ GISK++A I++ Sbjct: 591 SVPGISKQLAEVIFDTLQ 608 >gi|325927138|ref|ZP_08188403.1| Excinuclease ABC subunit C [Xanthomonas perforans 91-118] gi|325542494|gb|EGD13971.1| Excinuclease ABC subunit C [Xanthomonas perforans 91-118] Length = 619 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 231/607 (38%), Positives = 340/607 (56%), Gaps = 21/607 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+ PGVY+M +LYVGKA L+KR+ SY + R+T M+SQ+ + TVT Sbjct: 17 QLSTAPGVYRMYAGDDTLLYVGKAGALRKRVGSYFNGTPKNARLTSMLSQVARMDVTVTR 76 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE +IK L PR+N+ LRDDKS+PY+L+T + + P + HR +QG YFGP Sbjct: 77 SEAEALLLENQLIKSLSPRYNVSLRDDKSYPYVLLT-REQWPRIALHRGPRAVQGRYFGP 135 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + V V +T++ + + F LRSC DSVFR+R+RPCL +QI RCSGPC +++ Y E V Sbjct: 136 YTGVTGVRETLSLMHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSGPCVDLVAAPDYAESV 195 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242 A FL G + L E+I +M QA+ ++E A RD L++L +QN + Sbjct: 196 RRATMFLEGKSDQLGEEIMHSMQQASEALEFERAARLRDLLSSLRSMQNRQYVDGRAADL 255 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D + + AC+ F G+N GT +FF KT+ E + +IL F+ Q+Y + P Sbjct: 256 DVLACATQSSQACVLLLSFRDGRNLGTRSFFPKTNGEDSADEILGAFVSQYYAEHSPPRE 315 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 ILL E E L+E + +KV + +GE+ + A NA + +L+++ + Sbjct: 316 ILLDREIPEAELIEAALSTAAEHKVALKWNVRGERAGYLLLATRNAQLTLVTELTSQSAQ 375 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 + + L KR+E +D SH MG + V VV +G V+ QYR+FN+ + + Sbjct: 376 HARSEALREMLGLAEPVKRVECFDISHTMGEATVASCVVFDASGPVRGQYRRFNI--SGI 433 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD A MR +ERRF + ++ PDV+++DGG GQL+ AQ Sbjct: 434 TPGDDYAAMRQAIERRFRRAVEEN--------------GVLPDVLLIDGGAGQLAQAQAA 479 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 L L VEN + ++ +AKG +R AG E + G L P L FIQ++RDEAHRFAI Sbjct: 480 LADLGVEN-VLLVGVAKGEERRAGHEALIMADGRELRPGAASPALQFIQQVRDEAHRFAI 538 Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR+KA S L++I GIGP R+ LL+ FG + + + +A +EG++ +A Sbjct: 539 TGHRGRRQKARMTSKLEDIPGIGPRRRASLLKHFGGLVGLKAAGEAEIARVEGVNAALAA 598 Query: 602 KIYNHFH 608 +IY + H Sbjct: 599 RIYANLH 605 >gi|325264719|ref|ZP_08131448.1| excinuclease ABC subunit C [Clostridium sp. D5] gi|324030011|gb|EGB91297.1| excinuclease ABC subunit C [Clostridium sp. D5] Length = 625 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 194/619 (31%), Positives = 319/619 (51%), Gaps = 25/619 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M D ++YVGKA +L+ R++ Y S+ N +I M++ I + Sbjct: 11 ELKKLPASPGVYIMHDEKDNIIYVGKAISLKNRVRQYFQSSRNKGVKIEQMVTHIRRFEY 70 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK +P++N +L DDK++P+I +T P + R + Sbjct: 71 IVTDSELEALVLECNLIKEHRPKYNTMLMDDKTYPFIKVTTNEPFPRVMLARKMLKDKAK 130 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV TI+ + + + +RSC ++ + + RPCL + IK+C PC G IS E Sbjct: 131 YFGPYTSGLAVRDTIDLIHKLYHVRSCNRNLPKDIGKERPCLNYHIKQCEAPCQGYISQE 190 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235 +Y + + E +FL+G + + MN A+ ++E AI +R+ L ++ + Sbjct: 191 EYGKSIQEIIRFLNGHFDGILNDLEEKMNAASEALEFEKAIEYRELLNSVKKVSQKQKIT 250 Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 DS D ++ + A +Q F G+ G F+L+ +++IL F++Q+Y Sbjct: 251 DSSGEDRDILAVATEEEDAVVQVFFIRGGRLIGRDHFYLRITKNEEDSEILDSFIKQYYA 310 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351 P P ++L E E+ LLE + G KV I VPK+G K K++E A NA Sbjct: 311 GTPFIPGELMLPAELEDMHLLEEWLSTKRGGKVTIKVPKKGTKEKLVELAANNASLVLSK 370 Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E +K+ L R+E +D S+ G +VG MVV +N Sbjct: 371 DKERLKREEGRTIGAVKEIASLLELE-DINRMEAFDISNTNGFESVGSMVVYERGRPKRN 429 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YRKF + ++ DD MR VL RRF+ ++ E + F ++PD++++D Sbjct: 430 DYRKFKIKG--IQGADDYGSMREVLTRRFTHGLREREE-----SRDLGGFTAFPDLILMD 482 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ++ A VL L++ I + + K + E + ++ + Sbjct: 483 GGKGQVNVALQVLDDLHL--NIPVCGMVKDDYHRTRGLYYH---NEEIPIDKSSEAFRLV 537 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DEAHRFAI HR+ R K +S LD+I GIGP R++ L++ + ++ I +S E L Sbjct: 538 TRIQDEAHRFAIEYHRQLRGKGQVHSILDDIEGIGPARRKALMRHYMSLDAIKAASVEEL 597 Query: 590 ASIEGISKKIACKIYNHFH 608 A + +++K A +Y FH Sbjct: 598 AKVPSMNEKSAQAVYVFFH 616 >gi|119944946|ref|YP_942626.1| excinuclease ABC, C subunit [Psychromonas ingrahamii 37] gi|119863550|gb|ABM03027.1| Excinuclease ABC subunit C [Psychromonas ingrahamii 37] Length = 609 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 210/619 (33%), Positives = 323/619 (52%), Gaps = 31/619 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M + +V+YVGKA NL+KR+ SY + ++S I+ I TV Sbjct: 10 LKTVTSEPGVYRMFNQQ-KVIYVGKAKNLKKRLSSYFSLTQKHPKTLALVSHIDRIEVTV 68 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGSY 121 T TE EAL+LE N IKR KP +N+LLRDDKS+PY+ ++ HK P L R + +G+Y Sbjct: 69 THTETEALILEHNFIKRYKPHYNVLLRDDKSYPYLFLS-DHKHPQLTLVRTQNSKRKGTY 127 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ S AV ++++ +Q+ F +R C DS + +R+RPCL +Q+KRC PC + +Y Sbjct: 128 FGPYPSGGAVRESLHLMQKLFPIRQCEDSYYSNRSRPCLQYQLKRCLAPCVNAMPESEYQ 187 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 V A FL G + N+ ++ M A+ ++E A + RD++ +L +Q + Sbjct: 188 HQVELASAFLQGKSQNVINQLVDEMEVASQTLEFEKAAVRRDQIQSLKKVQEQQWVSGDI 247 Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295 ++D + + A I F G+ G+ +F K S+ ++LS FL QFY Sbjct: 248 EQLDVVGFSYEQGFASIHLLFVRQGRILGSRNYFPKIPKNSSKDEVLSAFLSQFYLSGQN 307 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILLS++ E ++ F + GYK + V +GE+ + ++ A NA + Sbjct: 308 GRAIPREILLSDDFAERAIFTDLFTEYCGYKTALKVDVRGERARFVKLAQKNAQIALQSH 367 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + + K L R+E YD SH+MG V VV G K+ YR+F Sbjct: 368 LSQKNNILKRYQLLEAKLDLSKPILRMECYDISHMMGEKTVASCVVFNREGEKKSDYRRF 427 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RRF L + E PD++ +DGG GQ Sbjct: 428 NI--TGITPGDDYAAMGQVLARRFKALQETEN---------------IPDIIFIDGGVGQ 470 Query: 476 LSAAQGVLKKLN---VENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ ++ L + +I IAKG R G+E + E + L+ P L+ IQ Sbjct: 471 LNQAENIISSLEENFKDKYPLLIGIAKGEGRKPGLETLILAGTHEIIELSSDSPALHLIQ 530 Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 ++RDE+HRFAI HR++R K S L+ I+G+G R++ LL G ++ + +S + L Sbjct: 531 QIRDESHRFAIMGHRQQRDKTRRTSTLENISGVGTKRRQALLNHLGGLQGVMSASIDELQ 590 Query: 591 SIEGISKKIACKIYNHFHK 609 I GIS +A IY H Sbjct: 591 KIPGISASLAETIYEALHN 609 >gi|58581915|ref|YP_200931.1| excinuclease ABC subunit C [Xanthomonas oryzae pv. oryzae KACC10331] gi|84623827|ref|YP_451199.1| excinuclease ABC subunit C [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576513|ref|YP_001913442.1| excinuclease ABC subunit C [Xanthomonas oryzae pv. oryzae PXO99A] gi|75435408|sp|Q5H0H5|UVRC_XANOR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|119367861|sp|Q2P3F2|UVRC_XANOM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|229557876|sp|B2SKI8|UVRC_XANOP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|58426509|gb|AAW75546.1| excinuclease ABC subunit C [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367767|dbj|BAE68925.1| excinuclease ABC subunit C [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188520965|gb|ACD58910.1| excinuclease ABC, C subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 618 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 233/607 (38%), Positives = 341/607 (56%), Gaps = 21/607 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+ PGVY+M +LYVGKA L+KR+ SY + R+T M+SQ+ + TVT Sbjct: 17 QLSTAPGVYRMYAGDDTLLYVGKAGALRKRVGSYFNGTPKNARLTSMLSQVARMDVTVTR 76 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE +IK L PR+N+ LRDDKS+PY+L+T +H P + HR +QG YFGP Sbjct: 77 SEAEALLLENQLIKSLSPRYNVSLRDDKSYPYVLLTREH-WPRIALHRGPRAVQGRYFGP 135 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + V V +T++ + + F LRSC DSVFR+R+RPCL +QI RCSGPC +++ Y E V Sbjct: 136 YTGVTGVRETLSLMHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSGPCVDLVAAPDYAESV 195 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242 A FL G + L E+I ++M QA+ ++E A RD L++L +QN + Sbjct: 196 RRATMFLEGKSDQLGEEIMQSMQQASEALEFERAARLRDLLSSLRSMQNRQYVDGRAADL 255 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D + + AC+ F G+N GT +FF KT+ E + +IL F+ Q+Y + P Sbjct: 256 DVLACATQSSQACVLLLSFRDGRNLGTRSFFPKTNGEDSADEILGAFVSQYYAEHSPPRE 315 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 ILL E ET L+E + +KV + +GE+ + A NA + +L+++ + Sbjct: 316 ILLDREIPETELIEAALSTAAEHKVALKWNVRGERAGYLLLATRNAQLTLVTELTSQSAQ 375 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 + + L KR+E +D SH MG + V VV +G V+ QYR+FN+ + + Sbjct: 376 HARSEALREMLGLAEPVKRVECFDISHTMGEATVASCVVFDASGPVRGQYRRFNI--SGI 433 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD A MR +ERRF + ++ PDV+++DGG GQL+ AQ Sbjct: 434 TPGDDYAAMRQAIERRFRRAVEEN--------------GVLPDVLLIDGGAGQLAQAQAA 479 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 L L VEN ++ +AKG +R AG E + G L P L FIQ++RDEAHRFAI Sbjct: 480 LADLGVENVW-LVGVAKGEERRAGHEALIMADGRELRPGAASPALQFIQQVRDEAHRFAI 538 Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR+KA S L++I GIGP R+ LL+ FG + + + +A +EG++ +A Sbjct: 539 TGHRGRRQKARMTSKLEDIPGIGPRRRASLLKHFGGLVGLKAAGEAEIARVEGVNAALAA 598 Query: 602 KIYNHFH 608 +IY + H Sbjct: 599 RIYANLH 605 >gi|259908856|ref|YP_002649212.1| excinuclease ABC subunit C [Erwinia pyrifoliae Ep1/96] gi|224964478|emb|CAX55988.1| UvrABC system protein C [Erwinia pyrifoliae Ep1/96] gi|283478843|emb|CAY74759.1| UvrABC system protein C [Erwinia pyrifoliae DSM 12163] Length = 610 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 214/618 (34%), Positives = 341/618 (55%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D AG V+YVGKA +L+KR+ SY N + + +++ I I TV Sbjct: 11 LKTVTSQPGVYRMYDSAGTVIYVGKAKDLKKRLASYFRGNLASRKTEALVALIEQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+PYI ++ H P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLSADH-HPRLASHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T++ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC ++ E+Y Sbjct: 130 GPFPNGYAVRETLSLLQKIFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVTEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + + FLSG + + ++ M QA+ + +E A RD++ A+ + Sbjct: 190 RQIDYVRLFLSGKDDQVLNQLVTRMEQASRELRFEEAGRLRDQIQAVRRVTEKQFVSNQG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + MD + + +AC+ F G+ G+ ++F K + A+++ F+ QFY Sbjct: 250 DDMDVIGVSFDSGMACLHVLFIRQGKVLGSRSYFPKVPGGTELAEVVQTFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P +IL+ E LL S + G +V I +G++ + ++ A NA + T + Sbjct: 310 ARTLPADILIDFTLPEKELLAASLTELAGRRVTIQSKPRGDRARYLKLARTNAATALTSR 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L+ + L + + LP I R+E +D SH MG V VV NG ++++YR++ Sbjct: 370 LAQHSTIHQRLAELAQTLKLPAIR-RMECFDISHTMGEQTVASCVVFDTNGPLRSEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + + DD A M VL RR+ + I+ + PDV+++DGGKGQ Sbjct: 429 NI--SGITPGDDYAAMNQVLRRRYGKAIEQSK---------------IPDVIVIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V ++ ++ +AKG R AG+E F+ +GE L P L+ IQ Sbjct: 472 LAQAKEVFAQLDVAWDKSHPLLLGVAKGSDRKAGLETLFLEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RD++H AIT HR +R K S L+ I GIGP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDDSHNHAITGHRNKRAKVKNTSALETIEGIGPKRRQMLLKYMGGLQPLINASMEEIA 591 Query: 591 SIEGISKKIACKIYNHFH 608 + GIS +A KI++ Sbjct: 592 GVPGISHALAEKIFHALK 609 >gi|300704599|ref|YP_003746202.1| uvrABC system protein C [Ralstonia solanacearum CFBP2957] gi|299072263|emb|CBJ43596.1| UvrABC system protein C (Excinuclease ABC subunit C) [Ralstonia solanacearum CFBP2957] Length = 668 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 204/641 (31%), Positives = 317/641 (49%), Gaps = 52/641 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P PGVY+ D G VLYVGKA +L+KR+ SY + RI M+++I I TV Sbjct: 43 RLPNLPGVYRYFDAQGSVLYVGKARDLKKRVSSYFTKTLLSPRIAMMVAKIARIETTVVR 102 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ ++ +H P + +R ++ + YFGP Sbjct: 103 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLS-QHAYPRMAYYRGATDRRHQYFGP 161 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV +++ LQ+ F LR+C D+VF +RTRPCLL QI RC+ PC IS E Y V Sbjct: 162 FPSAHAVRESMQILQKVFQLRTCEDTVFNNRTRPCLLHQIHRCTAPCVQAISPEDYARDV 221 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS----IYN 240 A FL G + + + M + + ++E A RD++ ALS + + Sbjct: 222 GNAAGFLLGRQDEVMQTLQDKMQRHAVALEFEQAAAVRDQIGALSTVLTRQSVEEVGQAS 281 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE--------------------- 279 +D ++ AC+ G++ G +F + Sbjct: 282 DIDILAVAIEGGHACVNLAMVRGGRHLGDKAYFPTHVEDGAAIVGVDVEADVPEGAEMQP 341 Query: 280 --STNAQIL-----SYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVP 332 + + + F+ Q Y D+ P +++S L+E + G +V + Sbjct: 342 EPERDPERMARDILEAFVAQHYLDQFVPPVLVVSHPIRAAGLIEALAAQA-GRRVSVVRQ 400 Query: 333 KQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP---KRIEIYDNSH 389 QG +R +E A A S ++LS + S Q + + + R+E +D SH Sbjct: 401 PQGARRAWLEMAEKGAELSLARRLSEQGSQQARTRALAEIIGIDLEDLATLRVECFDISH 460 Query: 390 IMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL 449 G + VV + +YR++N+ + DD A MR VL RR+ ++++ Sbjct: 461 TAGEATQASCVVFHSHAMQNGEYRRYNIQG--ITPGDDYAAMRQVLTRRYQKVVEQAAE- 517 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 P P V++DGGKGQ+ A+ V ++L ++ + ++ +AKG R G+E Sbjct: 518 ---------DTPDMPHTVLIDGGKGQVEVARQVFEELGLDIGL-LVGVAKGEGRKVGLET 567 Query: 510 FFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567 G L L L + ++RDEAHRFAIT R +R K S L+EI GIG R Sbjct: 568 LVFADGRPSLELGQGSAALMLVAQIRDEAHRFAITGMRAKRAKTRNTSRLEEIEGIGAKR 627 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LL FG ++ + +S E L ++EGIS+ +A +IY H Sbjct: 628 RQRLLARFGGLRGVMAASVEELTTVEGISQTLAEEIYRQLH 668 >gi|328474717|gb|EGF45522.1| excinuclease ABC subunit C [Vibrio parahaemolyticus 10329] Length = 610 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 204/619 (32%), Positives = 322/619 (52%), Gaps = 31/619 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M + V+YVGKA +LQKR+ SY + + ++S I I TV Sbjct: 11 LKTVTHQPGVYRMYNADAVVIYVGKAKDLQKRLSSYFRKKVDSEKTRALVSNIAKIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EAL+LE N IK+ P++N+LLRDDKS+PYI I+ HK P L HR + +G YF Sbjct: 71 THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFIS-GHKHPRLSMHRGAKKRKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYM 181 GP+ AV +T++ LQ+ F +R C D+V+ +RTRPCL++QI RC+GPC IS E+Y Sbjct: 130 GPYPDSGAVRETLHLLQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVSSIISDEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 E V + FL G + + +++ M A+ + +E A RD++ A+ +Q + Sbjct: 190 ELVGFVRLFLQGKDQQVLKQLIEKMEVASQQLRFEDAAKFRDQIQAIRRVQEQQYVSEDS 249 Query: 242 MDCF---SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 MD +ACI G+ G+ + F K ++ ++ FL Q+Y Sbjct: 250 MDDMDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPQNTSQQEVFDSFLTQYYLSHN 309 Query: 299 ----CPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 P I+L++E ++ ++ + + G KV G + + ++ + NA + T Sbjct: 310 EARTIPSRIILNQELADDLEPIQKALSEVAGRKVHFHTSPTGARGRYLKLSNTNALTAIT 369 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 K++ +++ K + + R+E +D SH MG S + VV G VK +YR Sbjct: 370 TKINHKMTINQRFKALRETLGME-SIMRMECFDISHTMGESTIASCVVFNNEGPVKQEYR 428 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ + DD A M LERR+S+ + E+ PD++ +DGGK Sbjct: 429 RYNI--TGITGGDDYAAMGQALERRYSKQLDVEK---------------IPDIIFIDGGK 471 Query: 474 GQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GQL+ A ++ + + R +I IAKG R G+E GE L P L+ IQ Sbjct: 472 GQLNRAHEIIAQYWGDWPKRPIMIGIAKGVTRKPGLETLITVDGEEFNLPSDAPALHLIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HR +R K S L+ I G+GP R++ LL+ G ++ + R+S E +A Sbjct: 532 HIRDESHNHAIAGHRAKRGKTRRTSALEGIEGVGPKRRQALLKYMGGLQELKRASVEEIA 591 Query: 591 SIEGISKKIACKIYNHFHK 609 + GIS +A I+ + Sbjct: 592 KVPGISHSLAEIIFQALKQ 610 >gi|323493302|ref|ZP_08098426.1| excinuclease ABC subunit C [Vibrio brasiliensis LMG 20546] gi|323312465|gb|EGA65605.1| excinuclease ABC subunit C [Vibrio brasiliensis LMG 20546] Length = 609 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 208/619 (33%), Positives = 325/619 (52%), Gaps = 31/619 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M + V+YVGKA +L+KR+ SY S + + ++S I I TV Sbjct: 10 LKTVTNQPGVYRMYNAESVVIYVGKAKDLKKRLSSYFRSKVDSEKTRALVSNIAKIDVTV 69 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EAL+LE N IK+ P++N+LLRDDKS+PYI I+ HK P L HR + +G YF Sbjct: 70 THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFIS-GHKHPRLSMHRGAKKRKGEYF 128 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYM 181 GP+ AV +T++ +Q+ F +R C D+V+ +RTRPCL++QI RC+ PC IS + Y Sbjct: 129 GPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAAPCVSSVISDQDYS 188 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 E V + FL G + + + M QA+ + +E A RD++ A+ +Q + Sbjct: 189 ELVGLVRLFLQGKDQQVLASLVEKMEQASQQLRFEQAAKFRDQIQAIRRVQEQQFVSEDS 248 Query: 242 MDCF---SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 MD +ACI G+ G+ + F K + +T ++ FL Q+Y Sbjct: 249 MDDMDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPNNTTQQEVFYSFLSQYYLSHN 308 Query: 299 ----CPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 P I+L+ +E+ LE + G +V V G + + ++ + NA + T Sbjct: 309 EARTIPTRIILNSGLTDESQPLEEALTSLAGRRVHFHVNPSGTRGRYLKLSNTNALTAIT 368 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 K++ +++ K + + I R+E +D SH MG S + VV + G VK +YR Sbjct: 369 TKINHKMTISQRFKALRELLDMESIT-RMECFDISHTMGESTIASCVVFNQEGPVKQEYR 427 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ + + DD A M VLERR+S+ + E+ PD+V +DGGK Sbjct: 428 RYNI--SGITGGDDYAAMGQVLERRYSKQLDVEK---------------IPDIVFIDGGK 470 Query: 474 GQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GQL+ A ++ + + R +I IAKG R G+E +GE L P L+ +Q Sbjct: 471 GQLNRAHEIISRYWGDWPKRPHLIGIAKGVTRKPGLETLITVEGEEFNLPSDAPALHLMQ 530 Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HR +R K S L+ I G+GP R++ LL+ G ++ + R+S E +A Sbjct: 531 HIRDESHNHAIAGHRAKRGKTRRTSALEGIEGVGPKRRQALLKYMGGLQELKRASVEEIA 590 Query: 591 SIEGISKKIACKIYNHFHK 609 + GIS +A IY + Sbjct: 591 KVPGISTSLAENIYQALKQ 609 >gi|303252515|ref|ZP_07338678.1| excinuclease ABC subunit C [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247263|ref|ZP_07529312.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648483|gb|EFL78676.1| excinuclease ABC subunit C [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856236|gb|EFM88390.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 610 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 200/618 (32%), Positives = 329/618 (53%), Gaps = 33/618 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+M D ++YVGKA +L+KR+ SY S + + +++ I++I T+T Sbjct: 10 DVPHLPGVYRMYDAKNTIIYVGKAKDLKKRLSSYFRSQLASKKTEALVANIHHIETTITH 69 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N IK +P++N+LLRDDKS+PYIL+T KH+ P + R S + G YFGP Sbjct: 70 SETEALLLEHNYIKENQPKYNVLLRDDKSYPYILLT-KHQHPRITSFRGSKKVAGEYFGP 128 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183 + + AV +T+N LQ+ F +R C DS +++R+RPCL +QI RC PC S +Y Sbjct: 129 YPNAGAVRETLNLLQKLFPIRQCEDSYYKNRSRPCLQYQIGRCLAPCVEGYYSQAEYDNQ 188 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240 V+ + FL G + + E + + M A D+E+A RD++ ++ +Q + Sbjct: 189 VNLVRLFLQGKDGQVVEHLVQKMENAAQDLDFEAAARFRDQIQSVRAVQEKQFVSNERLD 248 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296 +D S+ + +AC+ F G+ G ++F K + + +++ F+ QFY Sbjct: 249 DLDIISIAYQHGIACVHILFVRHGKVLGNRSYFPKVPNNTDLSELADTFVGQFYLQMNQH 308 Query: 297 KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P I++ + E T+L + + +G+K + + A NA + T + Sbjct: 309 RTIPNQIIIDQSLSEVTALANVLSEQAGHKVSIADKNIRGDKSRYLALAKTNAEAALTLQ 368 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L + + L I R+E +D SH MG V VV ENG +K+ YR+F Sbjct: 369 LKQDTHIRQRYDSLKTLLNLAEIK-RMECFDISHTMGNQTVASCVVFDENGPLKSDYRRF 427 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A + L +R+ + ++ E+ PD++ +DGGKGQ Sbjct: 428 NIEG--ITGGDDYAAIEQALLKRYDRNLEEEK---------------IPDIIFIDGGKGQ 470 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQ 531 L+ A LNV + + ++ +AKG +R AG+E + K + + L P L+ IQ Sbjct: 471 LNRALETFTSLNVSWDKRKPLLVGVAKGVERKAGLETLLISKWDKEIHLPPDSPALHLIQ 530 Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AIT HRK+R+KA S L+ I G+G R++ LL+ G ++ + ++ E + Sbjct: 531 HIRDESHNHAITGHRKKRQKAFTESGLESIAGVGAKRRQALLKYLGGMQGVKAATLEEIQ 590 Query: 591 SIEGISKKIACKIYNHFH 608 S+ GISK++A I++ Sbjct: 591 SVPGISKQLAEVIFDTLQ 608 >gi|170699578|ref|ZP_02890618.1| excinuclease ABC, C subunit [Burkholderia ambifaria IOP40-10] gi|170135529|gb|EDT03817.1| excinuclease ABC, C subunit [Burkholderia ambifaria IOP40-10] Length = 681 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 215/668 (32%), Positives = 331/668 (49%), Gaps = 69/668 (10%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D G VLYVGKA +L+KR+ SY + RI M+++I I TVT Sbjct: 19 QLPHMPGVYRYYDTVGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H+ P + +R S Q YFGP Sbjct: 79 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-AHRFPRMAYYRGSVDKQNQYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RC+ PC G IS++ Y V Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVGAISADDYAIDV 197 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 A +FL G + +++ + M+ + +E A R+++++L+ + + Sbjct: 198 SNAARFLLGRQSEVMKELEQKMHAFAAELKFEQAAAVRNQMSSLATVLHQQAIEVGSDSD 257 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS-----------EST--------- 281 D ++ C+ G++ G +F + + Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVESALTLAEGGLGDESDGADGADEA 317 Query: 282 ---------------------------NAQILSYFLRQFYTDKPCPENILLSEEAEETSL 314 A++L F+ Q Y P +++S L Sbjct: 318 AAALPGEPADEAAAARDGAASASGASVEAEVLDAFIAQHYLGNRVPPVLVVSHAPASRDL 377 Query: 315 LEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFA 374 LE+ +Q G+KV + QG++R + A NA + + LS + S Q + + + Sbjct: 378 LEL-LSEQAGHKVSLVRQPQGQRRAWLSMAEQNARLALARLLSEQGSQQARTRALAETLS 436 Query: 375 LPHI---PKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMM 431 RIE +D SH MG + VV + +YR++N+ + DD A M Sbjct: 437 FECDDLAMLRIECFDISHTMGEATQASCVVYHHHKMQSGEYRRYNI--TGITPGDDYAAM 494 Query: 432 RMVLERRFSQLIK---------NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 R VL RR+ ++++ + ++ +Q + P++V++DGGKGQ+ A+ V Sbjct: 495 RQVLTRRYEKMVEQAAQAAAADDAAGIDGESTRQAEASSLLPNIVLIDGGKGQVEIARQV 554 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFA 541 +L ++ + ++ +AKG R G+E G L L L + ++RDEAHRFA Sbjct: 555 FTELGLDTSM-LVGVAKGEGRKVGLETLVFADGRTPLELGKESAALMLVAQIRDEAHRFA 613 Query: 542 ITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 IT R +R KA S L+E+ GIG R++ LL FG ++ + +S E LAS+EGIS +A Sbjct: 614 ITGMRAKRAKARQTSRLEELEGIGAKRRQRLLARFGGLRGVVAASVEELASVEGISHALA 673 Query: 601 CKIYNHFH 608 +IY H Sbjct: 674 EQIYKQLH 681 >gi|262165478|ref|ZP_06033215.1| excinuclease ABC subunit C [Vibrio mimicus VM223] gi|262025194|gb|EEY43862.1| excinuclease ABC subunit C [Vibrio mimicus VM223] Length = 610 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 206/619 (33%), Positives = 324/619 (52%), Gaps = 31/619 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M + V+YVGKA +L+KR+ SY N + + ++S I I TV Sbjct: 11 LKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EAL+LE N IK+ P++N+LLRDDKS+PYI ++ HK P L HR + +G YF Sbjct: 71 THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKKRRGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GP+ AV +T++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC IS + Y Sbjct: 130 GPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDDGYQ 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 E V+ + FL G ++ + + M A+ + +E A RD++ A+ +Q + Sbjct: 190 EIVNYLRLFLHGKDNQVLSILVEKMELASRELRFEDAAKARDQIQAIRRVQEQQFVSDDS 249 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-- 296 D +ACI G+ G+ + F + +E++ ++ FL Q+Y Sbjct: 250 LEDQDVLGFAQENGIACIHILMIRQGKVLGSRSHFPRIPAETSQIEVFESFLSQYYLSHS 309 Query: 297 --KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 + P I+L++ EET L+++ + G KV V G + + + A NA + T Sbjct: 310 EARSIPTRIILNQGLTEETEALQMAISELAGRKVTFHVNPTGTRGRYLRLANTNALTAIT 369 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 K++ +++ K ++ + I R+E +D SH MG S + VV + G VK +YR Sbjct: 370 TKINHKMTIGQRFKALQEELGMDAIT-RMECFDISHTMGESTIASCVVFNQEGPVKQEYR 428 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ + DD A M VLERR+S+ + PD++ +DGGK Sbjct: 429 RYNI--TGITGGDDYAAMAQVLERRYSKQLD---------------SSKIPDIIFIDGGK 471 Query: 474 GQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GQL+ A ++ + II IAKG R G+E G+ L P L+ IQ Sbjct: 472 GQLNRAYEIISSCWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HR R K S L+ I G+GP R++ LL+ G ++ + R+S E +A Sbjct: 532 HIRDESHNHAIAGHRALRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIA 591 Query: 591 SIEGISKKIACKIYNHFHK 609 + GIS +A IY + Sbjct: 592 KVPGISHALAENIYQALKQ 610 >gi|28898718|ref|NP_798323.1| excinuclease ABC subunit C [Vibrio parahaemolyticus RIMD 2210633] gi|32130286|sp|Q87NC4|UVRC_VIBPA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|28806936|dbj|BAC60207.1| excinuclease ABC, subunit C [Vibrio parahaemolyticus RIMD 2210633] Length = 610 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 205/619 (33%), Positives = 323/619 (52%), Gaps = 31/619 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M + V+YVGKA +LQKR+ SY + + ++S I I TV Sbjct: 11 LKTVTHQPGVYRMYNADAVVIYVGKAKDLQKRLSSYFRKKVDSEKTRALVSNIAKIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EAL+LE N IK+ P++N+LLRDDKS+PYILI+ HK P L HR + +G YF Sbjct: 71 THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYILIS-GHKHPRLSMHRGAKKRKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYM 181 GP+ AV +T++ LQ+ F +R C D+V+ +RTRPCL++QI RC+GPC IS E+Y Sbjct: 130 GPYPDSGAVRETLHLLQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVSSIISDEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 E V + FL G + + +++ M A+ + +E A RD++ A+ +Q + Sbjct: 190 ELVGFVRLFLQGKDQQVLKQLIEKMEVASQQLRFEDAAKFRDQIQAIRRVQEQQYVSEDS 249 Query: 242 MDCF---SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 MD +ACI G+ G+ + F K ++ ++ FL Q+Y Sbjct: 250 MDDMDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPQNTSQQEVFDSFLTQYYLSHN 309 Query: 299 ----CPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 P I+L++E ++ ++ + + G KV G + + ++ + NA + T Sbjct: 310 EARTIPSRIILNQELADDLEPIQKALSEVAGRKVHFHTSPTGARGRYLKLSNTNALTAIT 369 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 K++ +++ K + + R+E +D SH MG S + VV G VK +YR Sbjct: 370 TKINHKMTINQRFKALRETLGME-SIMRMECFDISHTMGESTIASCVVFNNEGPVKQEYR 428 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ + DD A M LERR+S+ + E+ PD++ +DGGK Sbjct: 429 RYNI--TGITGGDDYAAMGQALERRYSKQLDVEK---------------IPDIIFIDGGK 471 Query: 474 GQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GQL+ A ++ + + R +I IAKG R G+E GE L P L+ IQ Sbjct: 472 GQLNRAHEIIAQYWGDWPKRPIMIGIAKGVTRKPGLETLITVDGEEFNLPSDAPALHLIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HR +R K S L+ I G+GP R++ LL+ G ++ + R+S E +A Sbjct: 532 HIRDESHNHAIAGHRAKRGKTRRTSALEGIEGVGPKRRQALLKYMGGLQELKRASVEEIA 591 Query: 591 SIEGISKKIACKIYNHFHK 609 + GIS +A I+ + Sbjct: 592 KVPGISHSLAEIIFQALKQ 610 >gi|225568882|ref|ZP_03777907.1| hypothetical protein CLOHYLEM_04961 [Clostridium hylemonae DSM 15053] gi|225162381|gb|EEG75000.1| hypothetical protein CLOHYLEM_04961 [Clostridium hylemonae DSM 15053] Length = 612 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 201/619 (32%), Positives = 323/619 (52%), Gaps = 25/619 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 +++P PGVY M D ++YVGKA +L+ R++ Y S + +I M++ I + Sbjct: 7 ELKKLPGKPGVYIMHDEKDDIIYVGKAISLKNRVRQYFQMSRSKGVKIDQMVTHIARFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK +P++N +L DDKS+P+I +T P + R + Sbjct: 67 IVTDSELEALVLECNLIKEHRPKYNTMLMDDKSYPFIKVTVDEPFPRIMLARKMVKDKAK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV+ TI +++ + +RSC+ + R R RPCL + I +C PC G IS E Sbjct: 127 YFGPYTSAGAVKDTIELIRKLYNIRSCSRKLPRDIGRERPCLNYHIHQCKAPCQGYISQE 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y + + E +FL+G + +++ M A+ ++E AI +R+ L ++ I Sbjct: 187 DYRKSIDEVLRFLNGNYDLILKELEEKMQCASEAMEFEKAIEYRELLNSVQKIAQKQKIT 246 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D ++ + A +Q F G+ G F+L+ + A+ILS F++QFY Sbjct: 247 DTAGDDRDILAVATEEEDAVVQVFFIRGGRLIGRDHFYLRITKGESEAEILSSFIKQFYA 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351 P P ++L EE E+ ++E ++ G+KV + VPK+G K K++E A NA Sbjct: 307 GTPYIPSQLMLQEEIEDLEVVEEWLTRRRGHKVHLRVPKKGAKEKLVELAQKNAALVLST 366 Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E +K+ K L I R+E YD S+ G ++VG M+V + +N Sbjct: 367 DKERLKREEGRTIGAVKELEKLLGLKGIV-RMEAYDISNTNGFASVGSMIVYEKGKPKRN 425 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YRKF + V+ DD A M VL RRF +K E K SF ++PD++++D Sbjct: 426 DYRKFKIKG--VQGADDYASMEEVLTRRFVHGMKEMEE-----GKDMGSFTAFPDLILMD 478 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ++ A VL +L + I + + K + E + + I Sbjct: 479 GGKGQVNVAVQVLDRLRL--NIPVCGMVKDDNHRTRG---LFYQNEEIPIEKDSEGFKLI 533 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DEAHRFAIT HRK R + +S LD+I G+GP R++ L+ F + I ++ E L Sbjct: 534 TRIQDEAHRFAITFHRKLRSQGQVHSVLDDIPGVGPARRKDLMSHFSNLDAIKNATVEEL 593 Query: 590 ASIEGISKKIACKIYNHFH 608 + +++K A +YN FH Sbjct: 594 GRLPSMNEKSARDVYNFFH 612 >gi|289427080|ref|ZP_06428796.1| excinuclease ABC, C subunit [Propionibacterium acnes J165] gi|295130383|ref|YP_003581046.1| excinuclease ABC, C subunit [Propionibacterium acnes SK137] gi|289159549|gb|EFD07737.1| excinuclease ABC, C subunit [Propionibacterium acnes J165] gi|291375448|gb|ADD99302.1| excinuclease ABC, C subunit [Propionibacterium acnes SK137] gi|313764678|gb|EFS36042.1| excinuclease ABC subunit C [Propionibacterium acnes HL013PA1] gi|313772464|gb|EFS38430.1| excinuclease ABC subunit C [Propionibacterium acnes HL074PA1] gi|313791727|gb|EFS39838.1| excinuclease ABC subunit C [Propionibacterium acnes HL110PA1] gi|313807298|gb|EFS45785.1| excinuclease ABC subunit C [Propionibacterium acnes HL087PA2] gi|313809805|gb|EFS47526.1| excinuclease ABC subunit C [Propionibacterium acnes HL083PA1] gi|313815745|gb|EFS53459.1| excinuclease ABC subunit C [Propionibacterium acnes HL059PA1] gi|313818344|gb|EFS56058.1| excinuclease ABC subunit C [Propionibacterium acnes HL046PA2] gi|313820106|gb|EFS57820.1| excinuclease ABC subunit C [Propionibacterium acnes HL036PA1] gi|313823085|gb|EFS60799.1| excinuclease ABC subunit C [Propionibacterium acnes HL036PA2] gi|313825639|gb|EFS63353.1| excinuclease ABC subunit C [Propionibacterium acnes HL063PA1] gi|313830718|gb|EFS68432.1| excinuclease ABC subunit C [Propionibacterium acnes HL007PA1] gi|313833936|gb|EFS71650.1| excinuclease ABC subunit C [Propionibacterium acnes HL056PA1] gi|314915173|gb|EFS79004.1| excinuclease ABC subunit C [Propionibacterium acnes HL005PA4] gi|314918373|gb|EFS82204.1| excinuclease ABC subunit C [Propionibacterium acnes HL050PA1] gi|314919862|gb|EFS83693.1| excinuclease ABC subunit C [Propionibacterium acnes HL050PA3] gi|314925334|gb|EFS89165.1| excinuclease ABC subunit C [Propionibacterium acnes HL036PA3] gi|314931877|gb|EFS95708.1| excinuclease ABC subunit C [Propionibacterium acnes HL067PA1] gi|314956035|gb|EFT00433.1| excinuclease ABC subunit C [Propionibacterium acnes HL027PA1] gi|314958429|gb|EFT02532.1| excinuclease ABC subunit C [Propionibacterium acnes HL002PA1] gi|314960220|gb|EFT04322.1| excinuclease ABC subunit C [Propionibacterium acnes HL002PA2] gi|314963026|gb|EFT07126.1| excinuclease ABC subunit C [Propionibacterium acnes HL082PA1] gi|314968143|gb|EFT12242.1| excinuclease ABC subunit C [Propionibacterium acnes HL037PA1] gi|314973144|gb|EFT17240.1| excinuclease ABC subunit C [Propionibacterium acnes HL053PA1] gi|314976313|gb|EFT20408.1| excinuclease ABC subunit C [Propionibacterium acnes HL045PA1] gi|314978206|gb|EFT22300.1| excinuclease ABC subunit C [Propionibacterium acnes HL072PA2] gi|314983478|gb|EFT27570.1| excinuclease ABC subunit C [Propionibacterium acnes HL005PA1] gi|315077671|gb|EFT49727.1| excinuclease ABC subunit C [Propionibacterium acnes HL053PA2] gi|315080275|gb|EFT52251.1| excinuclease ABC subunit C [Propionibacterium acnes HL078PA1] gi|315084537|gb|EFT56513.1| excinuclease ABC subunit C [Propionibacterium acnes HL027PA2] gi|315085874|gb|EFT57850.1| excinuclease ABC subunit C [Propionibacterium acnes HL002PA3] gi|315088709|gb|EFT60685.1| excinuclease ABC subunit C [Propionibacterium acnes HL072PA1] gi|315096339|gb|EFT68315.1| excinuclease ABC subunit C [Propionibacterium acnes HL038PA1] gi|315098318|gb|EFT70294.1| excinuclease ABC subunit C [Propionibacterium acnes HL059PA2] gi|315100987|gb|EFT72963.1| excinuclease ABC subunit C [Propionibacterium acnes HL046PA1] gi|315108269|gb|EFT80245.1| excinuclease ABC subunit C [Propionibacterium acnes HL030PA2] gi|327325972|gb|EGE67762.1| excinuclease ABC subunit C [Propionibacterium acnes HL096PA2] gi|327332157|gb|EGE73894.1| excinuclease ABC subunit C [Propionibacterium acnes HL096PA3] gi|327442778|gb|EGE89432.1| excinuclease ABC subunit C [Propionibacterium acnes HL013PA2] gi|327446148|gb|EGE92802.1| excinuclease ABC subunit C [Propionibacterium acnes HL043PA2] gi|327447873|gb|EGE94527.1| excinuclease ABC subunit C [Propionibacterium acnes HL043PA1] gi|327451000|gb|EGE97654.1| excinuclease ABC subunit C [Propionibacterium acnes HL087PA3] gi|327452921|gb|EGE99575.1| excinuclease ABC subunit C [Propionibacterium acnes HL092PA1] gi|327453651|gb|EGF00306.1| excinuclease ABC subunit C [Propionibacterium acnes HL083PA2] gi|328753031|gb|EGF66647.1| excinuclease ABC subunit C [Propionibacterium acnes HL087PA1] gi|328753688|gb|EGF67304.1| excinuclease ABC subunit C [Propionibacterium acnes HL020PA1] gi|328759223|gb|EGF72839.1| excinuclease ABC subunit C [Propionibacterium acnes HL025PA2] gi|332675222|gb|AEE72038.1| UvrABC system protein C [Propionibacterium acnes 266] Length = 672 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 190/646 (29%), Positives = 317/646 (49%), Gaps = 45/646 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D G+V+YVGKA NL+ R+ SY + R M++ ++++TV Sbjct: 13 TIPTQPGVYRFSDAHGQVIYVGKAKNLRNRLNSYFQDISALHPRTQRMVTTAAHVQWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 EVE+L LE IK PRFN++ RDDKS+P++ T + P ++ R + Y+G Sbjct: 73 QNEVESLQLEYTWIKEFDPRFNVMYRDDKSYPWLCFTWTDEYPRVFVGRGAHHKGWRYYG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180 PF A+ T+ +L R F +RSC+ VF +++ RPCLL I +CS PC I+S+ + Sbjct: 133 PFGQAWAIRDTVETLLRVFPMRSCSTGVFNRAKNQGRPCLLGYIGKCSAPCVERITSQAH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E E F++G + +++ M +A+ ++E A + RD L ALS N + Sbjct: 193 REIADEFCDFMAGRTTKIVKRLESQMAEASENLEFERAAVIRDSLGALSKTLERNAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294 D S+ + ++ G+ RG + ++ A+++ FL Q Y Sbjct: 253 DGTDADVISMALDPLEVGVKIFHVRGGRIRGERGWVADRADDADEAELMETFLTQLYGVN 312 Query: 295 ----------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344 P +++S E ++ + G V+I VP++G+K +++ Sbjct: 313 ASDGQVRDDGHGNAVPPLVIVSAEPTNPDVMSTILSSERGSHVEIRVPRRGDKATLMDTV 372 Query: 345 LINAHRSHTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMV 400 NA + Q S L++ + L P RIE YD SHI G + VG MV Sbjct: 373 TRNAQETLAQHKLKRASDLATRTRALEEIQESLGLDRAPLRIESYDISHIQGTNVVGSMV 432 Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE------------- 447 V + K++YR+F++ + DD A M VL RR +LI++ + Sbjct: 433 VFEDGMPRKSEYRRFSIKG--FEGSDDFAAMHEVLSRRLRRLIEDRDAMAAAQTPDGDVG 490 Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507 +L F P ++++DGG Q+ AAQ VL++ +E+ I + +AK + Sbjct: 491 SLIDPTTGSPRKFAYAPHLIVVDGGAPQVHAAQQVLEEFGLEDEIALCGLAKRLE----- 545 Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPL 566 E + + ++L LY +QRLRDEAHRFAIT HR +R KA S LD ++G+G Sbjct: 546 EVWLPDEEWPVILPRTSEGLYLLQRLRDEAHRFAITFHRSKRSKAMVESVLDGVSGLGET 605 Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 R++ L+ FG+V+ + +++ + + + G K+A ++ ++ Sbjct: 606 RRKALVSHFGSVRSLRKATVDDIVEVPGFGPKLAGEVVAALSQDKP 651 >gi|145636737|ref|ZP_01792403.1| excinuclease ABC subunit C [Haemophilus influenzae PittHH] gi|145270035|gb|EDK09972.1| excinuclease ABC subunit C [Haemophilus influenzae PittHH] Length = 609 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 210/616 (34%), Positives = 340/616 (55%), Gaps = 32/616 (5%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 PGVY+M D +V+YVGKA +L+KR+ SY N + + +++ I++I T+T +E Sbjct: 13 HEPGVYRMYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVASIHHIDTTLTSSET 72 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EALLLE N IK +PR+N+LLRDDKS+P+IL+T K + P + +R S G YFGP+ Sbjct: 73 EALLLEHNFIKLYQPRYNVLLRDDKSYPFILLT-KERHPRITSYRGSKKFAGEYFGPYPH 131 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHE 186 AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCS PC +S E+Y + V Sbjct: 132 AGAVRETLSLLQKLFPVRQCENSVYSNRSRPCLQYQIGRCSAPCVQGYVSDEEYNQQVEL 191 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMD 243 A+ FL G + + + + M QA+ D+E A +RD++ A+ + + MD Sbjct: 192 ARLFLQGKDQQVLDYLIGKMEQASRNLDFEQAARYRDQIQAVRSVIEKQFVSNERLDDMD 251 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPC 299 S+ + LAC+Q F G+ G ++F K +++ +++ F+ QFY + Sbjct: 252 IMSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPTDTDLSELTETFVGQFYLQGHQGRSI 311 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P +I++ + E S LE +Q G KV I +G+K K ++ A +NA + +L Sbjct: 312 PNSIIVDRQLSEKSELEQLLTEQAGRKVTIQESVKGDKSKYLQLAQVNAKAALNVQLKQS 371 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + + LP I R+E +D SH MG V VV + G +K+ YR+FN+ Sbjct: 372 SRMSERYQALCELLNLPEIK-RMECFDISHTMGNQTVASCVVFNKEGPLKSDYRRFNIEG 430 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A M L++R+ + ++ ++ PD++ +DGGKGQL+ A Sbjct: 431 --ITGGDDYAAMEQALQKRYERDLEEDK---------------IPDIIFIDGGKGQLNRA 473 Query: 480 QGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535 V + L V +NR +I +AKG R AG E + K+ + L L+ IQ +RD Sbjct: 474 LNVFQHLQVKWDKNRPHLIGVAKGVDRRAGQEVLIISKQDREIHLPDDSLALHLIQHIRD 533 Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E+H AI+ HRK+R+KA S L+ I G+G R++ LL+ G ++ + +++ + +AS+ G Sbjct: 534 ESHNHAISGHRKKRQKAFTQSGLETIEGVGAKRRQALLKYLGGLQGVKKATLDEIASVPG 593 Query: 595 ISKKIACKIYNHFHKN 610 IS K+A +I+ + Sbjct: 594 ISPKLAERIFETLKND 609 >gi|260582025|ref|ZP_05849820.1| excinuclease ABC, C subunit [Haemophilus influenzae NT127] gi|260094915|gb|EEW78808.1| excinuclease ABC, C subunit [Haemophilus influenzae NT127] Length = 609 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 210/616 (34%), Positives = 339/616 (55%), Gaps = 32/616 (5%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 PGVY+M D +V+YVGKA +L+KR+ SY N + + +++ I++I T+T +E Sbjct: 13 HEPGVYRMYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVASIHHIDTTLTSSET 72 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EALLLE N IK +PR+N+LLRDDKS+P+IL+T K + P + +R S G YFGP+ Sbjct: 73 EALLLEHNFIKLYQPRYNVLLRDDKSYPFILLT-KERHPRITSYRGSKKFTGEYFGPYPH 131 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHE 186 AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCS PC +S E+Y + V Sbjct: 132 AGAVRETLSLLQKLFPVRQCENSVYSNRSRPCLQYQIGRCSAPCVQGYVSDEEYNQQVEL 191 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMD 243 A+ FL G + + + + M QA+ D+E A +RD++ A+ + + MD Sbjct: 192 ARLFLQGKDQQVLDYLIGKMEQASKNLDFEQAARYRDQIQAVRSVIEKQFVSNERLDDMD 251 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPC 299 S+ + LAC+Q F G+ G ++F K + + +++ F+ QFY + Sbjct: 252 IMSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTETFVGQFYLQGHQGRSI 311 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P +I++ + E S LE +Q G KV I +G+K K ++ A +NA + +L Sbjct: 312 PNSIIVDRQLAEKSELEQLLSEQAGRKVTIQESVKGDKSKYLQLAQVNAKAALNVQLKQS 371 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + + LP I R+E +D SH MG V VV + G +K+ YR+FN+ Sbjct: 372 SRMSERYQALCELLNLPEIK-RMECFDISHTMGNQTVASCVVFNQEGPLKSDYRRFNIEG 430 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A M L++R+ + ++ ++ PD++ +DGGKGQL+ A Sbjct: 431 --ITGGDDYAAMEQALQKRYERDLEEDK---------------IPDIIFIDGGKGQLNRA 473 Query: 480 QGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535 V + L V +NR +I +AKG R AG E + K+ + L L+ IQ +RD Sbjct: 474 LNVFQHLQVKWDKNRPHLIGVAKGVDRRAGQEVLIISKQDREIHLPDDSLALHLIQHIRD 533 Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E+H AI+ HRK+R+KA S L+ I G+G R++ LL+ G ++ + +++ + +AS+ G Sbjct: 534 ESHNHAISGHRKKRQKAFTQSGLETIEGVGAKRRQALLKYLGGLQGVKKATLDEIASVPG 593 Query: 595 ISKKIACKIYNHFHKN 610 IS K+A +I+ + Sbjct: 594 ISPKLAERIFETLKND 609 >gi|258626431|ref|ZP_05721278.1| excinuclease ABC subunit C [Vibrio mimicus VM603] gi|258581483|gb|EEW06385.1| excinuclease ABC subunit C [Vibrio mimicus VM603] Length = 610 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 207/619 (33%), Positives = 324/619 (52%), Gaps = 31/619 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M + V+YVGKA +L+KR+ SY N + + ++S I I TV Sbjct: 11 LKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EAL+LE N IK+ P++N+LLRDDKS+PYI ++ HK P L HR + +G YF Sbjct: 71 THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKKRRGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GP+ AV +T++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC IS + Y Sbjct: 130 GPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDDGYQ 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 E V+ + FL G ++ + + M A+ + +E A RD++ A+ +Q + Sbjct: 190 EIVNYLRLFLQGKDNQVLSILVEKMELASRELRFEDAAKARDQIQAIRRVQEQQFVSDDS 249 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-- 296 D +ACI G+ G+ + F K +E++ ++ FL Q+Y Sbjct: 250 LEDQDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPAETSQIEVFESFLSQYYLSHS 309 Query: 297 --KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 + P I+L++ EET L+ + + G KV V G + + + A NA + T Sbjct: 310 EARSIPTRIILNQGLTEETEALQTAITELAGRKVTFHVNPTGTRGRYLRLANTNALTAIT 369 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 K++ +++ K ++ + I R+E +D SH MG S + VV + G VK +YR Sbjct: 370 TKINHKMTIGQRFKALQEELGMDVIT-RMECFDISHTMGESTIASCVVFNQEGPVKQEYR 428 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ + DD A M VLERR+S+ + PD++ +DGGK Sbjct: 429 RYNI--TGITGGDDYAAMAQVLERRYSKQLD---------------SSKIPDIIFIDGGK 471 Query: 474 GQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GQL+ A ++ + II IAKG R G+E G+ L P L+ IQ Sbjct: 472 GQLNRAYEIISSCWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HR +R K S L+ I G+GP R++ LL+ G ++ + R+S E +A Sbjct: 532 HIRDESHNHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIA 591 Query: 591 SIEGISKKIACKIYNHFHK 609 + GIS +A IY + Sbjct: 592 KVPGISHALAENIYQALKQ 610 >gi|307245091|ref|ZP_07527184.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254046|ref|ZP_07535893.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258502|ref|ZP_07540239.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307260737|ref|ZP_07542426.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306853980|gb|EFM86192.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862971|gb|EFM94918.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867406|gb|EFM99257.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869576|gb|EFN01364.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 610 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 199/618 (32%), Positives = 330/618 (53%), Gaps = 33/618 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+M D ++YVGKA +L+KR+ SY S + + +++ I++I T+T Sbjct: 10 DVPHLPGVYRMYDAKNTIIYVGKAKDLKKRLSSYFRSQLASKKTEALVANIHHIETTITH 69 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N IK +P++N+LLRDDKS+PYIL+T KH+ P + R S + G YFGP Sbjct: 70 SETEALLLEHNYIKENQPKYNVLLRDDKSYPYILLT-KHQHPRITSFRGSKKVAGEYFGP 128 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183 + + AV +T+N LQ+ F +R C DS +++R+RPCL +QI RC PC S +Y Sbjct: 129 YPNAGAVRETLNLLQKLFPIRQCEDSYYKNRSRPCLQYQIGRCLAPCVEGYYSQAEYDNQ 188 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240 V+ + FL G + + E + + M A + D+E+A RD++ ++ +Q + Sbjct: 189 VNLVRLFLQGKDGQVVEHLVQKMENAAQELDFEAAARFRDQIQSVRAVQEKQFVSNERLD 248 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296 +D S+ + +AC+ F G+ G ++F K + + +++ F+ QFY Sbjct: 249 DLDIISIAYQHGIACVHILFVRHGKVLGNRSYFPKVPNNTDLSELADTFVGQFYLQMNQH 308 Query: 297 KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P I++ + E T+L + + +G+K + + A NA + T + Sbjct: 309 RTIPNQIIIDQSLSEVTALANVLSEQAGHKVSIADKNIRGDKSRYLALAKTNAEAALTLQ 368 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L + + L I R+E +D SH MG V VV +NG +K+ YR+F Sbjct: 369 LKQDTHIRQRYDSLKALLNLAEIK-RMECFDISHTMGNQTVASCVVFDKNGPLKSDYRRF 427 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A + L +R+ + ++ E+ PD++ +DGGKGQ Sbjct: 428 NIEG--ITGGDDYAAIEQALLKRYDRNLEEEK---------------IPDIIFIDGGKGQ 470 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQ 531 L+ A LNV + + ++ +AKG +R AG+E + K + + L P L+ IQ Sbjct: 471 LNRALETFTSLNVSWDKRKPLLVGVAKGVERKAGLETLLISKWDKEIHLPPDSPALHLIQ 530 Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AIT HRK+R+KA S L+ I G+G R++ LL+ G ++ + ++ E + Sbjct: 531 HIRDESHNHAITGHRKKRQKAFTESGLESIAGVGAKRRQALLKYLGGMQGVKAATLEEIQ 590 Query: 591 SIEGISKKIACKIYNHFH 608 S+ GISK++A I++ Sbjct: 591 SVPGISKQLAEVIFDTLQ 608 >gi|83748435|ref|ZP_00945457.1| Excinuclease ABC subunit C [Ralstonia solanacearum UW551] gi|207743582|ref|YP_002259974.1| excinuclease abc subunit c (sos response dna repair protein) [Ralstonia solanacearum IPO1609] gi|83724846|gb|EAP72002.1| Excinuclease ABC subunit C [Ralstonia solanacearum UW551] gi|206594981|emb|CAQ61908.1| excinuclease abc subunit c (sos response dna repair protein) [Ralstonia solanacearum IPO1609] Length = 668 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 208/641 (32%), Positives = 319/641 (49%), Gaps = 52/641 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P PGVY+ D G VLYVGKA +L+KR+ SY + RI M+++I I TV Sbjct: 43 RLPNLPGVYRYFDAQGSVLYVGKARDLKKRVSSYFTKTLLSPRIAMMVAKIARIETTVVR 102 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ ++ +H P + +R ++ + YFGP Sbjct: 103 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLS-QHAYPRMAYYRGATDRRHQYFGP 161 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV +++ LQ+ F LR+C D+VF +RTRPCLL QI RC+ PC IS E Y V Sbjct: 162 FPSAHAVRESMQILQKVFQLRTCEDTVFNNRTRPCLLHQIHRCTAPCVQAISPEDYARDV 221 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS----IYN 240 A FL G + + + M + + ++E A RD++ ALS + + Sbjct: 222 ANAAGFLLGRQDEVMQTLQDKMQRHAVALEFEQAAAVRDQIGALSTVLTRQSVEEVGQAS 281 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT------------------------ 276 +D ++ AC+ G++ G +F Sbjct: 282 DIDILAVAIEGGHACVNLAMVRGGRHLGDKAYFPTHVEEGAAIVGVDVEADVPEGTETQP 341 Query: 277 ----DSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVP 332 D E IL F+ Q Y D+ P +++S L+E + G +V + Sbjct: 342 EPARDPERMARDILEAFVAQHYLDQFVPPVLVVSHPIRAAGLIEALAAQA-GRRVSVVRQ 400 Query: 333 KQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP---KRIEIYDNSH 389 QG +R +E A A S ++LS + S Q + + + R+E +D SH Sbjct: 401 PQGARRAWLEMAEKGAELSLARRLSEQGSQQARTRALAETIGIDLEDLATLRVECFDISH 460 Query: 390 IMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL 449 G + VV + +YR++N+ + DD A MR VL RR+ ++++ Sbjct: 461 TAGEATQASCVVFHSHAMQNGEYRRYNIQG--ITPGDDYAAMRQVLTRRYQKVVEQAAE- 517 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 P P++V++DGGKGQ+ A+ V ++L ++ + ++ +AKG R G+E Sbjct: 518 ---------DTPDVPNIVLIDGGKGQVEVARQVFEELGLDIGL-LVGVAKGEGRKVGLET 567 Query: 510 FFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567 L L L + ++RDEAHRFAIT R +R KA S L+EI GIG R Sbjct: 568 LVFADERPSLELGQGSAALMLVAQIRDEAHRFAITGMRAKRAKARNTSRLEEIEGIGAKR 627 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LL FG ++ + +S E L ++EGIS+ +A +IY H Sbjct: 628 RQRLLARFGGLRGVMTASVEELTTVEGISQTLAEEIYRQLH 668 >gi|313838516|gb|EFS76230.1| excinuclease ABC subunit C [Propionibacterium acnes HL086PA1] Length = 672 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 189/646 (29%), Positives = 316/646 (48%), Gaps = 45/646 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D G+V+YVGKA NL+ R+ SY + R M++ ++++TV Sbjct: 13 TIPTQPGVYRFSDAHGQVIYVGKAKNLRNRLNSYFQDISALHPRTQRMVTTAAHVQWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 EVE+L LE IK PRFN++ RDDKS+P++ T + P ++ R + Y+G Sbjct: 73 QNEVESLQLEYTWIKEFDPRFNVMYRDDKSYPWLCFTWTDEYPRVFVGRGAHHKGWRYYG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180 PF A+ T+ +L R F +RSC+ VF +++ RPCLL I +CS PC I+S+ + Sbjct: 133 PFGQAWAIRDTVETLLRVFPMRSCSTGVFNRAKNQGRPCLLGYIGKCSAPCVERITSQAH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E E F++G + +++ M +A+ ++E A + R L ALS N + Sbjct: 193 REIADEFCDFMAGRTTKIVKRLESQMAEASENLEFERAAVIRGSLGALSKTLERNAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294 D S+ + ++ G+ RG + ++ A+++ FL Q Y Sbjct: 253 DGTDADVISMALDPLEVGVKIFHVRGGRIRGERGWVADRADDADEAELMETFLTQLYGVN 312 Query: 295 ----------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344 P +++S E ++ + G V+I VP++G+K +++ Sbjct: 313 ASDGQVRDDGHGNAVPPLVIVSAEPTNPDVMSTILSSERGSHVEIRVPRRGDKATLMDTV 372 Query: 345 LINAHRSHTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMV 400 NA + Q S L++ + L P RIE YD SHI G + VG MV Sbjct: 373 TRNAQETLAQHKLKRASDLATRTRALEEIQESLGLDRAPLRIESYDISHIQGTNVVGSMV 432 Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE------------- 447 V + K++YR+F++ + DD A M VL RR +LI++ + Sbjct: 433 VFEDGMPRKSEYRRFSIKG--FEGSDDFAAMHEVLSRRLRRLIEDRDAMAAAQTPDGDVG 490 Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507 +L F P ++++DGG Q+ AAQ VL++ +E+ I + +AK + Sbjct: 491 SLIDPTTGSPRKFAYAPHLIVVDGGAPQVHAAQQVLEEFGLEDEIALCGLAKRLE----- 545 Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPL 566 E + + ++L LY +QRLRDEAHRFAIT HR +R KA S LD ++G+G Sbjct: 546 EVWLPDEEWPVILPRTSEGLYLLQRLRDEAHRFAITFHRSKRSKAMVESVLDGVSGLGET 605 Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 R++ L+ FG+V+ + +++ + + + G K+A ++ ++ Sbjct: 606 RRKALVSHFGSVRSLRKATVDDIVEVPGFGPKLAGEVVAALSQDKP 651 >gi|207725207|ref|YP_002255603.1| excinuclease abc subunit c (sos response dna repair protein) [Ralstonia solanacearum MolK2] gi|206590441|emb|CAQ37403.1| excinuclease abc subunit c (sos response dna repair protein) [Ralstonia solanacearum MolK2] Length = 668 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 207/641 (32%), Positives = 317/641 (49%), Gaps = 52/641 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P PGVY+ D G VLYVGKA +L+KR+ SY + RI M+++I I TV Sbjct: 43 RLPNLPGVYRYFDAQGSVLYVGKARDLKKRVSSYFTKTLLSPRIAMMVAKIARIETTVVR 102 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ ++ +H P + +R ++ + YFGP Sbjct: 103 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLS-QHAYPRMAYYRGATDRRHQYFGP 161 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV +++ LQ+ F LR+C D+VF +RTRPCLL QI RC+ PC IS E Y V Sbjct: 162 FPSAHAVRESMQILQKVFQLRTCEDTVFNNRTRPCLLHQIHRCTAPCVQAISPEDYARDV 221 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS----IYN 240 A FL G + + + M + + ++E A RD++ ALS + + Sbjct: 222 ANAAGFLLGRQDEVMQTLQDKMQRHAVALEFEQAAAVRDQIGALSTVLTRQSVEEVGQAS 281 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT------------------------ 276 +D ++ AC+ G++ G +F Sbjct: 282 DIDILAVAIEGGHACVNLAMVRGGRHLGDKAYFPTHVEEGAAIVGVDVEADVPEGTETQP 341 Query: 277 ----DSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVP 332 D E IL F+ Q Y D+ P +++S L+E + G +V + Sbjct: 342 EPARDPERMARDILEAFVAQHYLDQFVPPVLVVSHPIRAAGLIEALAAQA-GRRVSVVRQ 400 Query: 333 KQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP---KRIEIYDNSH 389 QG +R +E A A S ++LS + S Q + + + R+E +D SH Sbjct: 401 PQGARRAWLEMAEKGAELSLARRLSEQGSQQARTRALAETIGIDLEDLATLRVECFDISH 460 Query: 390 IMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL 449 G + VV + +YR++N+ + DD A MR VL RR+ ++++ Sbjct: 461 TAGEATQASCVVFHSHAMQNGEYRRYNIQG--ITPGDDYAAMRQVLTRRYQKVVEQAAE- 517 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 P P +V++DGGKGQ+ A+ V ++L ++ + ++ +AKG R G+E Sbjct: 518 ---------DTPDMPHIVLIDGGKGQVEVARQVFEELGLDIGL-LVGVAKGEGRKVGLET 567 Query: 510 FFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567 L L L + ++RDEAHRFAIT R +R K S L+EI GIG R Sbjct: 568 LVFADERPSLELGQGSAALMLVAQIRDEAHRFAITGMRAKRAKTRNTSRLEEIEGIGAKR 627 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LL FG ++ + +S E L ++EGIS+ +A +IY H Sbjct: 628 RQRLLARFGGLRGVMAASVEELTTVEGISQTLAEEIYRQLH 668 >gi|54309405|ref|YP_130425.1| excinuclease ABC subunit C [Photobacterium profundum SS9] gi|81399352|sp|Q6LQ03|UVRC_PHOPR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|46913841|emb|CAG20623.1| putative excinuclease ABC, subunit C [Photobacterium profundum SS9] Length = 616 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 212/618 (34%), Positives = 333/618 (53%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY N + ++ I + TV Sbjct: 16 LKTVTHQPGVYRMYDAVGDVIYVGKAKDLKKRLSSYFRINVAGEKTRALVKNICKVDVTV 75 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EAL+LE N IK P++N+LLRDDKS+PYI +++ H P L HR + +G YF Sbjct: 76 THTETEALILEHNYIKLYLPKYNVLLRDDKSYPYIFLSNHH-HPRLSIHRGTKKRKGEYF 134 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GP+ AV ++++ +Q+ F +R C DSV+ +R+RPCL++QI RC PC E I+ + Y Sbjct: 135 GPYPDAGAVRESLHLMQKLFPIRQCEDSVYANRSRPCLMYQIGRCLAPCVKELITEKDYE 194 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + V A+ FL G + + + M QA+ ++E A RD++ AL +Q ++ Sbjct: 195 DQVSFARLFLQGKDRQVIASLVEKMEQASQSLNFEQAATFRDQIQALRRVQEQQFVSHDS 254 Query: 242 MDC---FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D + H +ACI + G+ G+ ++F K S++ ++LS F+ QFY ++ Sbjct: 255 EDDLDVIGIAHQNGMACIHALYIRQGKILGSRSYFPKMPSDAELTEVLSSFITQFYLNQA 314 Query: 299 ----CPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 P I+L E ++ +++ + G K+++ V +G + + ++ A NA + T Sbjct: 315 EGRVIPSVIILGENLGDDAAVITETLSDIAGRKIELKVNPRGNRARYLKLAQTNAMTALT 374 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 KLS +++ + K L I R+E +D SH MG V VV + G K YR Sbjct: 375 SKLSHKMTIHERFSELRKALNLETIS-RMECFDISHTMGEKTVASCVVFNQEGPFKQDYR 433 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ + DD A M VLERR+ + ++ E+ PD++ +DGG+ Sbjct: 434 RYNI--TGITGGDDYAAMGQVLERRYGKPMEPEK---------------IPDIIFIDGGR 476 Query: 474 GQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GQLS A V+K + +I IAKG R AG+E GE L P L+ IQ Sbjct: 477 GQLSRAYNVVKPFMDEWPKQPLLIGIAKGVTRKAGLETLIFITGEEFSLPSDSPALHLIQ 536 Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI+ HR +R K S L+++ GIGP R++ LL+ G + + R+S E +A Sbjct: 537 HIRDESHNHAISGHRAQRAKVRKRSALEDVEGIGPKRRQALLKFMGGLHELKRASREEIA 596 Query: 591 SIEGISKKIACKIYNHFH 608 + GISK +A KIY+ Sbjct: 597 KVPGISKALAEKIYDALQ 614 >gi|73541931|ref|YP_296451.1| excinuclease ABC subunit C [Ralstonia eutropha JMP134] gi|90111759|sp|Q46Z26|UVRC_RALEJ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|72119344|gb|AAZ61607.1| Excinuclease ABC subunit C [Ralstonia eutropha JMP134] Length = 663 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 210/641 (32%), Positives = 324/641 (50%), Gaps = 43/641 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P PGVY+ +D AG VLYVGKA NL+KR+ SY + + RI M+++I I TV Sbjct: 29 RLPGLPGVYRYIDSAGNVLYVGKARNLKKRVSSYFNKTQLSPRIAMMVAKIARIDTTVVR 88 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLE N+IK L PR+NIL RDDKS+P++ +T H+ P + +R ++ + YFGP Sbjct: 89 TEAEALLLENNLIKALAPRYNILFRDDKSYPFLKLT-GHRFPRMAYYRGATDRKHQYFGP 147 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV +++ LQ+ F LR+C D+VF +RTRPCLL QI RC+GPC G IS Y V Sbjct: 148 FPSAYAVRESMQILQKVFQLRTCEDTVFNNRTRPCLLHQIHRCTGPCVGAISEADYARDV 207 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS----IYN 240 A FL G + E + M + ++ ++E A RD++AALS + Sbjct: 208 GNAASFLQGRETEVLEGLQSKMEEHAMQLEFEQAAAVRDQIAALSTVLKRQAVEEVGQAR 267 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE-----STNAQILS-------- 287 +D ++ AC+ G++ G +F E + Sbjct: 268 DIDVLAVAVEGGRACVNLAMVRGGRHLGDKAYFPAHADEAAMIVEDGDEGAEGGETEPAP 327 Query: 288 ---------------YFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVP 332 F+ Q Y D+ P I++S ++ +LLE + Sbjct: 328 AVPLGVERIAARVLSAFMVQHYLDQAPPPIIVVSHVPDDAALLEALALHAGRKIA-LVRQ 386 Query: 333 KQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP---KRIEIYDNSH 389 QG+++ +E A A + ++LS + S + + + + R+E +D SH Sbjct: 387 PQGQRKAWLEMAQQGAALALARRLSEQGSQEARTRALAETIGIDLEDLALLRVECFDISH 446 Query: 390 IMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL 449 G + VV + +YR++N+ + DD A MR VL RR+ +L++ + Sbjct: 447 TAGEATQASCVVFHHHDMQNGEYRRYNIQD--ITPGDDYAAMRQVLTRRYQKLVELMQE- 503 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 + P VV++DGGKGQ+ A+ V ++L ++ + ++ +AKG R G+E Sbjct: 504 QGGLDPAGEASSPMPHVVLIDGGKGQVEVARQVFEELGLDIGL-LVGVAKGEGRKVGLET 562 Query: 510 FFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLR 567 G L L L + ++RDEAHRFAIT R RR KA S L+EI G+G R Sbjct: 563 LVFADGRPSLELGQGSAALMLVAQIRDEAHRFAITGMRARRAKARTTSRLEEIEGVGARR 622 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LL FG ++ + +S + LAS++GIS+ +A +IY H Sbjct: 623 RQKLLTRFGGLRGVMAASIDELASVDGISRGLAEEIYRQLH 663 >gi|300781129|ref|ZP_07090983.1| excision endonuclease subunit UvrC [Corynebacterium genitalium ATCC 33030] gi|300532836|gb|EFK53897.1| excision endonuclease subunit UvrC [Corynebacterium genitalium ATCC 33030] Length = 693 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 192/687 (27%), Positives = 306/687 (44%), Gaps = 82/687 (11%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVT 63 +P PGVY+ D AGRV+YVGKA NL+ R+ +Y R M+ + +TV Sbjct: 13 TIPTDPGVYKFRDGAGRVVYVGKAKNLRSRLNNYFQPPQTLHPRTRQMVFTAAKVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +EVEAL LE IKR P FN++ RDDK++P + ++ K P + +R YFG Sbjct: 73 ASEVEALQLEYTWIKRYDPWFNVMYRDDKTYPMLAVSVGEKYPRAFFYRGPRRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 PF+ AV +T++ L R F +R+C++ V+ RPCLL I +CS PC +S +Y Sbjct: 133 PFSHAWAVRETLDLLTRVFPIRTCSNGVYNRHEQLGRPCLLGYIDKCSAPCVSRVSEPEY 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + V+ F+SG + + + M +A+ ++E A RD L A++ + + Sbjct: 193 DDIVNGFMGFMSGRTDAVVKGLTSQMMEASENLEFEKAARLRDDLGAVNKVMEKQTVVLS 252 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST--------------NA 283 D + ++ A +Q G+ R + ++ + Sbjct: 253 IDTDADVIAFDTDELEAAVQIFTVRDGRIRSQRGWVVEKTGDEPGSMERLDEGQDDPALP 312 Query: 284 QILSYFLRQFYTDK------------------------------------PCPENILLSE 307 ++ FL Q+Y+D P P IL+ Sbjct: 313 VLMQNFLVQYYSDAVERMEQEQAEDERLAAKKVRRRGVDQESRAQVKPPMPVPREILVEV 372 Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE----ISHQ 363 E + K G V VP++G+K+ ++E NA S Q + Sbjct: 373 MPAEAEETQALLEKLRGGPVSFRVPQRGDKKSLMETVHRNAKESLRQHKLKRVGDLTARS 432 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 L+D + P RIE D SHI G V +VV + K YR++ + Sbjct: 433 QALQDIQDALMMDEAPLRIECTDISHIQGTDVVASLVVFEDGLPKKADYRRYRIKEAAGD 492 Query: 424 TQ-DDCAMMRMVLERRFSQLIKN-------------EENLNFHPKKQEYSFPSWPDVVIL 469 + DD + V RRF + ++ +E + F P + I+ Sbjct: 493 GRSDDVGSIAEVTRRRFKRHNEDKLANPEESDQVFDDEEDSAVESTGNKRFAYPPQLFIV 552 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGK Q++AAQ V +L + + +T+I +AK + E + E L+L +Y Sbjct: 553 DGGKPQVNAAQAVFDELGIVD-VTLIGLAKRLE-----EVWVPDDDEPLILPRNSEGMYL 606 Query: 530 IQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 +Q++RDEAHRFAIT HR++R K S LD I G+GP R+ L++ FG+VK + +S E Sbjct: 607 LQQIRDEAHRFAITYHRQQRSKRMRASALDGIPGLGPARRSDLVKHFGSVKKLKAASAEE 666 Query: 589 LASIEGISKKIACKIYNHFHKNTSHTP 615 + + GI K+A ++ H K+ S + Sbjct: 667 IEEVPGIGPKLAETVWQHLRKDPSSSE 693 >gi|307256305|ref|ZP_07538088.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865131|gb|EFM97031.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 610 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 198/618 (32%), Positives = 330/618 (53%), Gaps = 33/618 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+M D ++YVGKA +L+KR+ SY S + + +++ I+++ T+T Sbjct: 10 DVPHLPGVYRMYDAKNTIIYVGKAKDLKKRLSSYFRSQLASKKTEALVANIHHVETTITH 69 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N IK +P++N+LLRDDKS+PYIL+T KH+ P + R S + G YFGP Sbjct: 70 SETEALLLEHNYIKENQPKYNVLLRDDKSYPYILLT-KHQHPRITSFRGSKKVAGEYFGP 128 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183 + + AV +T+N LQ+ F +R C DS +++R+RPCL +QI RC PC S +Y Sbjct: 129 YPNAGAVRETLNLLQKLFPIRQCEDSYYKNRSRPCLQYQIGRCLAPCVEGYYSQAEYDNQ 188 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240 V+ + FL G + + E + + M A + D+E+A RD++ ++ +Q + Sbjct: 189 VNLVRLFLQGKDGQVVEHLVQKMENAAQELDFEAAARFRDQIQSVRAVQEKQFVSNERLD 248 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296 +D S+ + +AC+ F G+ G ++F K + + +++ F+ QFY Sbjct: 249 DLDIISIAYQHGIACVHILFVRHGKVLGNRSYFPKVPNNTDLSELADTFVGQFYLQMNQH 308 Query: 297 KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P I++ + E T+L + + +G+K + + A NA + T + Sbjct: 309 RTIPNQIIIDQSLSEVTALANVLSEQAGHKVSIADKNIRGDKSRYLALAKTNAEAALTLQ 368 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L + + L I R+E +D SH MG V VV +NG +K+ YR+F Sbjct: 369 LKQDTHIRQRYDSLKALLNLAEIK-RMECFDISHTMGNQTVASCVVFDKNGPLKSDYRRF 427 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A + L +R+ + ++ E+ PD++ +DGGKGQ Sbjct: 428 NIEG--ITGGDDYAAIEQALLKRYDRNLEEEK---------------IPDIIFIDGGKGQ 470 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQ 531 L+ A LNV + + ++ +AKG +R AG+E + K + + L P L+ IQ Sbjct: 471 LNRALETFTSLNVSWDKRKPLLVGVAKGVERKAGLETLLISKWDKEIHLPPDSPALHLIQ 530 Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AIT HRK+R+KA S L+ I G+G R++ LL+ G ++ + ++ E + Sbjct: 531 HIRDESHNHAITGHRKKRQKAFTESGLESIAGVGAKRRQALLKYLGGMQGVKSATLEEIQ 590 Query: 591 SIEGISKKIACKIYNHFH 608 S+ GISK++A I++ Sbjct: 591 SVPGISKQLAEVIFDTLQ 608 >gi|262171753|ref|ZP_06039431.1| excinuclease ABC subunit C [Vibrio mimicus MB-451] gi|261892829|gb|EEY38815.1| excinuclease ABC subunit C [Vibrio mimicus MB-451] Length = 610 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 207/619 (33%), Positives = 324/619 (52%), Gaps = 31/619 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M + V+YVGKA +L+KR+ SY N + + ++S I I TV Sbjct: 11 LKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EAL+LE N IK+ P++N+LLRDDKS+PYI ++ HK P L HR + +G YF Sbjct: 71 THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKKRRGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GP+ AV +T++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC IS + Y Sbjct: 130 GPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDDSYQ 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 E V+ + FL G ++ + + M A+ + +E A RD++ A+ +Q + Sbjct: 190 EIVNYLRLFLQGKDNQVLSILVEKMELASRELRFEDAAKARDQIQAIRRVQEQQFVSDDS 249 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-- 296 D +ACI G+ G+ + F K +E++ ++ FL Q+Y Sbjct: 250 LEDQDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPAETSQIEVFESFLSQYYLSHS 309 Query: 297 --KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 + P I+L++ EET L+ + + G KV V G + + + A NA + T Sbjct: 310 EARSIPTRIILNQGLTEETEALQTAITELAGRKVTFHVNPTGTRGRYLRLANTNALTAIT 369 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 K++ +++ K ++ + I R+E +D SH MG S + VV + G VK +YR Sbjct: 370 TKINHKMTIGQRFKALQEELGMDVIT-RMECFDISHTMGESTIASCVVFNQEGPVKQEYR 428 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ + DD A M VLERR+S+ + PD++ +DGGK Sbjct: 429 RYNITD--ITGGDDYAAMAQVLERRYSKQLD---------------SSKIPDIIFIDGGK 471 Query: 474 GQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GQL+ A ++ + II IAKG R G+E G+ L P L+ IQ Sbjct: 472 GQLNRAYEIISSCWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HR +R K S L+ I G+GP R++ LL+ G ++ + R+S E +A Sbjct: 532 HIRDESHNHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIA 591 Query: 591 SIEGISKKIACKIYNHFHK 609 + GIS +A IY + Sbjct: 592 KVPGISHALAENIYQALKQ 610 >gi|78047815|ref|YP_363990.1| excinuclease ABC subunit C [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|90111762|sp|Q3BTC3|UVRC_XANC5 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|78036245|emb|CAJ23936.1| excinuclease ABC subunit C [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 619 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 231/607 (38%), Positives = 339/607 (55%), Gaps = 21/607 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+ PGVY+M +LYVGKA L+KR+ SY + R+T M+SQ+ + TVT Sbjct: 17 QLSTAPGVYRMYAGDDTLLYVGKAGALRKRVGSYFNGTPKNARLTSMLSQVARMDVTVTR 76 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE +IK L PR+N+ LRDDKS+PY+L+T + + P + HR +QG YFGP Sbjct: 77 SEAEALLLENQLIKSLSPRYNVSLRDDKSYPYVLLT-REQWPRIALHRGPRAVQGRYFGP 135 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + V V +T++ + + F LRSC DSVFR+R+RPCL +QI RCSGPC +++ Y E V Sbjct: 136 YTGVTGVRETLSLMHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSGPCVDLVAAPDYAESV 195 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242 A FL G + L E+I +M QA+ ++E A RD L++L +QN + Sbjct: 196 RRATMFLEGKSDQLGEEIMHSMQQASEALEFERAARLRDLLSSLRSMQNRQYVDGRAADL 255 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D + + AC+ F G+N GT +FF KT+ E + +IL F+ Q+Y + P Sbjct: 256 DVLACATQSSQACVLLLSFRDGRNLGTRSFFPKTNGEDSADEILGAFVSQYYAEHSPPRE 315 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 ILL E E L+E + +KV + +GE+ + A NA + +L+++ + Sbjct: 316 ILLDREIPEAELIEAALSTAAEHKVALKWNVRGERAGYLLLATRNAQLTLVTELTSQSAQ 375 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 + + L KR+E +D SH MG + V VV +G V+ QYR+FN+ + + Sbjct: 376 HARSEALREMLGLAEPVKRVECFDISHTMGEATVASCVVFDASGPVRGQYRRFNI--SGI 433 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD A MR +ERRF + ++ PDV+++DGG GQL+ AQ Sbjct: 434 TPGDDYAAMRQAIERRFRRAVEEN--------------GVLPDVLLIDGGAGQLAQAQAA 479 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 L L VEN + ++ +AKG +R AG E + G L P L FIQ++RDEAHRFAI Sbjct: 480 LADLGVEN-VLLVGVAKGEERRAGHEALIMADGRELRPGAASPALQFIQQVRDEAHRFAI 538 Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR RR KA S L++I GIGP R+ LL+ FG + + + +A +EG++ +A Sbjct: 539 TGHRGRRHKARMTSKLEDIPGIGPRRRASLLKHFGGLVGLKAAGEAEIARVEGVNAALAA 598 Query: 602 KIYNHFH 608 +IY + H Sbjct: 599 RIYANLH 605 >gi|167586643|ref|ZP_02379031.1| Excinuclease ABC, C subunit [Burkholderia ubonensis Bu] Length = 670 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 210/657 (31%), Positives = 331/657 (50%), Gaps = 58/657 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D AG VLYVGKA +L+KR+ SY + RI M+++I + TVT Sbjct: 19 QLPHLPGVYRYYDAAGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARVETTVTR 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H+ P + +R + Q YFGP Sbjct: 79 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-AHRFPRMAYYRGAVDKQNQYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RC+ PC G I+ E Y V Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVGAIAEEDYARDV 197 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 A +FL G + +++ + M+ + +E A R+++++L+ + + Sbjct: 198 SNAARFLLGRQSEVMKELEQKMHGFAAELKFEQAAAVRNQMSSLATVLHQQAIEVGSDSD 257 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS----------EST---------- 281 D ++ C+ G++ G +F + Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPTHVESALTLAEGGLDDEAEPAVEALPG 317 Query: 282 ----------------NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGY 325 +++L F+ Q Y P +++S LL++ +Q G+ Sbjct: 318 QPADDAGGARNAQASVESEVLDAFIAQHYLGNRVPPVLVVSHAPASRDLLDL-LSEQAGH 376 Query: 326 KVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHI---PKRI 382 KV + QG++R + A NA + + LS + S Q + + + RI Sbjct: 377 KVSLVRQPQGQRRAWLSMAEQNAALALARLLSEQGSQQARTRALADTLSYENDDLAHLRI 436 Query: 383 EIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQL 442 E +D SH MG + VV + +YR++N+ + DD A MR VL RR+ ++ Sbjct: 437 ECFDISHTMGEATQASCVVYHHHKMQSGEYRRYNI--TGITPGDDYAAMRQVLTRRYEKM 494 Query: 443 IK---------NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRIT 493 ++ + ++ +Q + P++V++DGGKGQ+ A+ V +L ++ + Sbjct: 495 VEQAAQAAAADDAAGIDGETTRQAEAASLLPNIVLIDGGKGQVEIARQVFTELGLDTSM- 553 Query: 494 IISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA 552 ++ +AKG R G+E G L L L + ++RDEAHRFAIT R +R KA Sbjct: 554 LVGVAKGEGRKVGLETLVFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKA 613 Query: 553 A-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 S L+E+ G+G R++ LL FG ++ + +S + LAS+EGIS+ +A +IY H Sbjct: 614 RQTSRLEELEGVGAKRRQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 670 >gi|296135586|ref|YP_003642828.1| excinuclease ABC, C subunit [Thiomonas intermedia K12] gi|295795708|gb|ADG30498.1| excinuclease ABC, C subunit [Thiomonas intermedia K12] Length = 647 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 198/631 (31%), Positives = 317/631 (50%), Gaps = 34/631 (5%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 P PGVY+ G +LYVGKA +L+KR+ SY ++ RI M+S+I+ + TVT TE Sbjct: 22 PHLPGVYRYFAADGSLLYVGKARDLKKRVSSYFQKDHGGTRIGLMVSRIHRLDTTVTRTE 81 Query: 67 VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126 EALLLE N+IK PR+NIL RDDKS+PY+ IT H+ P + +R ++ + YFGP+ Sbjct: 82 AEALLLENNLIKTQHPRYNILFRDDKSYPYLQITTAHEYPRVAYYRGATDRKQQYFGPYP 141 Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186 + +V+++I LQ+ F LR+C D+VF +R+RPCLL QI RC+ PC G+IS+ Y V Sbjct: 142 NAWSVKESIAVLQKVFQLRTCEDTVFSNRSRPCLLHQIHRCTAPCVGKISAADYARDVQH 201 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMD 243 A +FL G + + + M + +E A + RD++AALS + +D Sbjct: 202 AVRFLRGDHGVVMGDLQLQMQSLSDALRFEEAAVLRDQIAALSGVLQQQSMEVGSAEDVD 261 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT-----DSESTNAQIL------------ 286 ++ AC+ G++ G +F + A + Sbjct: 262 ILAVALRGGRACVNLAMVRGGRHLGDRAYFPSQVQAALELGDDLADGVAPEQGAPGQAAQ 321 Query: 287 ---SYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQ 343 F+ Q Y P ++ E L + + G++++ +G++R +E Sbjct: 322 RVLQAFVAQHYLQMAPPPVLVCDLPVEPELLDALG--EHAGHRMQQVTQPRGQRRDWLEM 379 Query: 344 ALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPK---RIEIYDNSHIMGCSAVGCMV 400 A A + T+ L+ E S + + L R E +D SH G + V Sbjct: 380 AQKGAQIALTRLLAEEGSQRERTFALAQALGLDAEQAEGLRAECFDISHTAGEATQASCV 439 Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSF 460 V E+ +QYR+F ++ + DD A MR VL RR+ ++ + + + Sbjct: 440 VYAEHAMQPSQYRRFRIND--ITPGDDYAAMRQVLTRRYKRVAEAQAQGALAADGETPGD 497 Query: 461 PSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA-LV 519 PD+V++DGG+GQ++ A+ V +L ++ + I+ + KG R G+E+ G L Sbjct: 498 ARLPDLVLVDGGRGQVTMAREVFTELGLDLSV-IVGVEKGEGRKVGLEELVFADGRPKLT 556 Query: 520 LNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--SPLDEINGIGPLRKRLLLQSFGT 577 L L + ++RDEAHRFAIT R R K S L++I GIGP R+ LL FG Sbjct: 557 LPADSAALMLVAQIRDEAHRFAITGMRAARAKVRTGGSRLEDIPGIGPKRRAKLLARFGG 616 Query: 578 VKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ + +S + L +++GIS+++A +Y H Sbjct: 617 IRGVEAASEDDLMTVDGISRELAHLLYKALH 647 >gi|134295173|ref|YP_001118908.1| excinuclease ABC subunit C [Burkholderia vietnamiensis G4] gi|189038031|sp|A4JCS0|UVRC_BURVG RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|134138330|gb|ABO54073.1| Excinuclease ABC subunit C [Burkholderia vietnamiensis G4] Length = 683 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 214/670 (31%), Positives = 329/670 (49%), Gaps = 71/670 (10%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D G VLYVGKA +L+KR+ SY + RI M+++I I TVT Sbjct: 19 QLPHMPGVYRYYDATGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H+ P + +R S Q YFGP Sbjct: 79 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-AHRFPRMAYYRGSVDKQNQYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RC+ PC G I+ + Y V Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVGAITEDDYAIDV 197 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 A +FL G + ++ + M+ + +E A R+++++L+ + + Sbjct: 198 SNAARFLLGRQSEVMNELEQKMHAFAAELKFEQAAAVRNQMSSLATVLHQQAIEVGGDSD 257 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS----------------------- 278 +D ++ C+ G++ G +F Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPTHVESALTLAEGGLGDEADGVDDAAAA 317 Query: 279 --------------------------ESTNAQILSYFLRQFYTDKPCPENILLSEEAEET 312 S A++L F+ Q Y P +++S Sbjct: 318 MPDQPVEGEGDGDGGAAARVAGAGAGASVEAEVLDAFISQHYLGNRVPPVLVVSHAPASR 377 Query: 313 SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKK 372 LLE+ +Q G+KV + QG++R + A NA + + LS + S Q + + Sbjct: 378 DLLEL-LSEQAGHKVSLVRQPQGQRRAWLTMAEQNARIALARLLSEQGSQQARTRALAET 436 Query: 373 FALPHIP---KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCA 429 L RIE +D SH MG + VV + +YR++N+ + DD A Sbjct: 437 LGLECDDLATLRIECFDISHTMGEATQASCVVYHHHKMQSGEYRRYNI--AGITPGDDYA 494 Query: 430 MMRMVLERRFSQLIK---------NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 MR VL RR+ ++++ ++ +Q + P++V++DGGKGQ+ A+ Sbjct: 495 AMRQVLTRRYEKMVELAAQAAAADAATGIDGESTRQAEASSLLPNIVLIDGGKGQVEIAR 554 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHR 539 V +L ++ + ++ +AKG R G+E G L L L + ++RDEAHR Sbjct: 555 QVFTELGLDTSM-LVGVAKGEGRKVGLETLVFADGRTPLELGKESAALMLVAQIRDEAHR 613 Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAIT R +R KA S L+E++G+G R++ LL FG ++ + +S E LAS++GIS Sbjct: 614 FAITGMRAKRAKARQTSRLEELDGVGAKRRQRLLARFGGLRGVVAASVEELASVDGISHA 673 Query: 599 IACKIYNHFH 608 +A +IY H Sbjct: 674 LAEQIYKQLH 683 >gi|146312146|ref|YP_001177220.1| excinuclease ABC subunit C [Enterobacter sp. 638] gi|145319022|gb|ABP61169.1| Excinuclease ABC subunit C [Enterobacter sp. 638] Length = 607 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 213/618 (34%), Positives = 332/618 (53%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D V+YVGKA +L+KR+ SY +N + + +++QI I TV Sbjct: 8 LKTVTSQPGVYRMYDAGETVIYVGKAKDLKKRLSSYFRNNLASRKTEALVAQIQQIDVTV 67 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 68 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 126 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 127 GPFPNGYAVRETLALLQKIFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 186 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + V + FL+G + + ++ M +A+ +E A RD++ A+ + N Sbjct: 187 QQVEYVRLFLAGKDDQVLTQLIERMEKASQLLAFEEAARIRDQIQAVRRVTEKQFVSNNG 246 Query: 242 M--DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 D + + LAC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 247 DDLDVIGVSFDAGLACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 306 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G +V + +G++ + ++ A NA + T K Sbjct: 307 MRTLPSEILLDFNLNDKTLLADSLSELAGRRVNVQTKPRGDRARYLKLARTNAATALTTK 366 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP + R+E +D SH MG V VV NG ++ +YR++ Sbjct: 367 LSQQSTIHQRLLALATLLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 425 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I+ + PDV+I+DGGKGQ Sbjct: 426 NI--TGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVIIIDGGKGQ 468 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L A+ V +L+V ++ ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 469 LGQAKQVFAELDVPWDKHHPLMLGVAKGTDRKAGLETLFFEPEGEGFNLPPDSPALHVIQ 528 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 529 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLLNASVEEIA 588 Query: 591 SIEGISKKIACKIYNHFH 608 + GIS+ +A KIY Sbjct: 589 KVPGISQGLAEKIYYSLK 606 >gi|332993140|gb|AEF03195.1| excinuclease ABC subunit C [Alteromonas sp. SN2] Length = 584 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 201/601 (33%), Positives = 320/601 (53%), Gaps = 25/601 (4%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M + V+YVGKA NL+KR+ SY N + ++ QI N+ TV +E EA LLE Sbjct: 1 MYNAQEEVIYVGKAKNLKKRVSSYFRMNVDNAKTRSLVLQIANMDVTVVNSETEAFLLEN 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK+ KPR+N+++RDDKS+P+I ++ H+ P L HR +G YFGP+ S AV ++ Sbjct: 61 NFIKKYKPRYNVVMRDDKSYPFIFLS-DHQHPRLSFHRGPQKKKGEYFGPYPSAGAVRES 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHEAKKFLSG 193 + S+QR F +R C DS +R R+RPCL +Q++RCS PC +S E+Y E + A+ FL G Sbjct: 120 LRSMQRIFPVRQCEDSYYRARSRPCLQYQMQRCSAPCVEGYVSDEEYNEQIDLARLFLKG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYNRMDCFSLYHNK 251 N + + M +A+ ++E+A +RD++ L +Q + MD F Sbjct: 180 KNQQVIGTLVDKMEKASEALNFEAAARYRDQINTLRKVQERQWVAGTQDEMDVFGFAVKG 239 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--DKPCPENILLSEEA 309 N+ACIQ F Q G+ FF K + + +I FL QFY +K P+ ++ + Sbjct: 240 NMACIQVMFIRDSQLLGSKAFFPKVPNTADEQEIFESFLLQFYLAGNKLIPKQMVFASAL 299 Query: 310 EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDF 369 + + + GY+V + EKR+ +E A NA + + + S D Sbjct: 300 SDEDAIADLLSGEAGYRVNFFKGAREEKRRYLELAQANAETALETQYGEQKSVFARYLDL 359 Query: 370 TKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCA 429 L +R+E +D SH G V VV G +K+ YR++N+ + DD A Sbjct: 360 ETALELDAPLQRMECFDISHTSGEQTVASCVVFNREGPLKSDYRRYNIEG--ITPGDDYA 417 Query: 430 MMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE 489 M L+RR+ + + ++ PD++++DGGKGQLS A+ + + Sbjct: 418 AMAQALKRRYKSVKEVQK---------------IPDLLLIDGGKGQLSQAETFFEDWPHD 462 Query: 490 NRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAITTHRKR 548 + ++ +AKG R G+E + + + ++ P L+ IQ +RDE+HRFAIT HR R Sbjct: 463 KKPMLLGVAKGTTRKPGLETIILADSHDTVPMDSHSPALHLIQHIRDESHRFAITGHRNR 522 Query: 549 RKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 R+K S L+ I G+G R++ LL+ G ++ + ++S + +AS+ GISK++A IY+H Sbjct: 523 RQKVKTTSSLETIPGVGAKRRQTLLKYMGGLQGLKKASKDEIASVPGISKELADTIYDHL 582 Query: 608 H 608 H Sbjct: 583 H 583 >gi|325963185|ref|YP_004241091.1| excinuclease ABC subunit C [Arthrobacter phenanthrenivorans Sphe3] gi|323469272|gb|ADX72957.1| Excinuclease ABC subunit C [Arthrobacter phenanthrenivorans Sphe3] Length = 665 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 194/646 (30%), Positives = 313/646 (48%), Gaps = 45/646 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVT 63 ++P PGVY+ D GRV+YVGKA +L+ R+ SY + + M+ +++ +TV Sbjct: 13 EIPTNPGVYRFRDQHGRVIYVGKAKSLRSRLNSYFANPAGLLPKTYAMVHAASSVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E+E+L LE IK KPRFN++ RDDK++PY+ +T K P + R YFG Sbjct: 73 GSELESLQLEYTWIKEFKPRFNVVFRDDKTYPYLAVTVGEKYPRVQVMRGDKKKGTRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180 P+ A+ +T+++L R F +RSC+ VF+ RPCLL I +CS PC G IS E + Sbjct: 133 PYT-AGAIRETMDTLLRVFPVRSCSAGVFKRAEASGRPCLLGYIDKCSAPCVGRISPEDH 191 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + F+ G K+ + M +A + DYE A RD + AL + N + Sbjct: 192 RALAEDFCAFMGGEAKRFIAKLEKQMAEAVAELDYERAARLRDDITALRKVFERNAVVLA 251 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D F+L+ ++ A +Q G+ RG + ++ +ST ++ + L+Q Y + Sbjct: 252 EETDADIFALHEDELEAAVQVFHVRGGRIRGQRGWVVEKVEDSTTPDLVEHLLQQVYGED 311 Query: 298 -----PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 P +L+ L G KV I VP++G+K ++ NA + Sbjct: 312 GDSHGRLPREVLVPVAPSNAEELAQWLSGMRGAKVDIRVPQRGDKAALMSTVRENAEHAL 371 Query: 353 TQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 + L++ + LP RIE +D SH+ G + V MVVV + Sbjct: 372 KLHKTRRAGDLTVRSQALQELQEALDLPVPLLRIECFDVSHVQGTNVVASMVVVEDGLPK 431 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEEN-------------------L 449 K+ YRKF++ DD A M VL RRF + ++++ L Sbjct: 432 KSDYRKFSVTGA--AASDDTAAMHDVLTRRFRRYLEDKSAQVDDAALAGEPEEFGEGSLL 489 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 + F P++V++DGGK Q++AA L L +++ + ++ +AK + E Sbjct: 490 DTTTPAPRAKFAYPPNLVVVDGGKPQVNAAARALADLGIDD-VYVVGLAKRLE-----EV 543 Query: 510 FFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRK 568 + ++L LY +QR+RDEAHRFAI+ HR++R KA S LD + G+G ++ Sbjct: 544 WLPDSDFPVILPRTSQGLYLLQRIRDEAHRFAISFHRQKRGKAMTVSALDGVPGLGASKR 603 Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 + LL FG+VK + ++ L+ +GI +A I NHF + Sbjct: 604 KALLAHFGSVKGVKAATAAELSQAKGIGPALASAIVNHFAPDGPEP 649 >gi|328760529|gb|EGF74097.1| excinuclease ABC subunit C [Propionibacterium acnes HL099PA1] Length = 672 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 190/646 (29%), Positives = 317/646 (49%), Gaps = 45/646 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D G+V+YVGKA NL+ R+ SY + R M++ ++++TV Sbjct: 13 TIPTQPGVYRFSDAHGQVIYVGKAKNLRNRLNSYFQDISALHPRTQRMVTTAAHVQWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 EVE+L LE IK PRFN++ RDDKS+P++ T + P ++ R + Y+G Sbjct: 73 QNEVESLQLEYTWIKEFDPRFNVMYRDDKSYPWLCFTWTDEYPRVFVGRGAHHKGWRYYG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180 PF A+ T+ +L R F +RSC+ VF +++ RPCLL I +CS PC I+S+ + Sbjct: 133 PFGQAWAIRDTVETLLRVFPMRSCSTGVFNRAKNQGRPCLLGYIGKCSAPCVERITSQAH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E E F++G + +++ M +A+ ++E A + RD L ALS N + Sbjct: 193 REIADEFCDFMAGRTTKIVKRLEYQMAEASENLEFERAAVIRDSLGALSKTLERNAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294 D S+ + ++ G+ RG + ++ A+++ FL Q Y Sbjct: 253 DGTDADVISMALDPLEVGVKIFHVRGGRIRGERGWVADRADDADEAELMETFLTQLYGVN 312 Query: 295 ----------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344 P +++S E ++ + G V+I VP++G+K +++ Sbjct: 313 ASDGQVRDDGHGNAVPPLVIVSAEPTNPDVMSTILSSERGSHVEIRVPRRGDKATLMDTV 372 Query: 345 LINAHRSHTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMV 400 NA + Q S L++ + L P RIE YD SHI G + VG MV Sbjct: 373 TRNAQETLAQHKLKRASDLATRTRALEEIQESLGLDRAPLRIESYDISHIQGTNVVGSMV 432 Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE------------- 447 V + K++YR+F++ + DD A M VL RR +LI++ + Sbjct: 433 VFEDGMPRKSEYRRFSIKG--FEGSDDFAAMHEVLSRRLRRLIEDRDAMAAAQTPDGDVG 490 Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507 +L F P ++++DGG Q+ AAQ VL++ +E+ I + +AK + Sbjct: 491 SLIDPTTGSPRKFAYAPHLIVVDGGAPQVHAAQQVLEEFGLEDEIALCGLAKRLE----- 545 Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPL 566 E + + ++L LY +QRLRDEAHRFAIT HR +R KA S LD ++G+G Sbjct: 546 EVWLPDEEWPVILPRTSEGLYLLQRLRDEAHRFAITFHRSKRSKAMVESVLDGVSGLGET 605 Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 R++ L+ FG+V+ + +++ + + + G K+A ++ ++ Sbjct: 606 RRKALVSHFGSVRSLRKATVDDIVEVPGFGPKLAGEVVAALSQDKP 651 >gi|93007140|ref|YP_581577.1| excinuclease ABC, C subunit [Psychrobacter cryohalolentis K5] gi|92394818|gb|ABE76093.1| Excinuclease ABC subunit C [Psychrobacter cryohalolentis K5] Length = 645 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 199/614 (32%), Positives = 314/614 (51%), Gaps = 29/614 (4%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+ML G +LYVGKA +L+ R+ SY + ++++I+NI +T Sbjct: 53 QRLPNLPGVYKMLGKNGDILYVGKAKSLKSRVNSYFAKTIDHPKTRALVARIHNIETIIT 112 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-STIQGSYF 122 +E EALLLE N+IK +P +N+LLRDDKS+ Y+ I+ P L R + +G +F Sbjct: 113 RSETEALLLEQNLIKEYRPPYNVLLRDDKSYLYVFISADKPYPRLAYGRGKGNHQKGRFF 172 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF S A ++T+ +Q+ F +R C ++ F+ R RPCL +QIKRC PC G +S E+Y E Sbjct: 173 GPFPSAHAAKETLVLMQKMFQMRQCTNTFFKQRKRPCLEYQIKRCRAPCVGLVSPEEYSE 232 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--N 240 V+ +FL G + ++ + M + + D+E A+ +RD+L+ L +Q Sbjct: 233 DVNNTIRFLKGDSSDIHTALIEKMEASAEELDFEKAVFYRDQLSMLREVQAKQAVYTVQG 292 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KP 298 D ++ + C+ G+ G +F DS A LS F+ FY Sbjct: 293 EADVIAIASQGGMTCVNVLTVRGGRVLGGKNYFPDVDSSEPLADNLSAFITSFYFQVTDD 352 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P I+LS+E + + + +G KV I + + + ++ A +N + + KL Sbjct: 353 LPAEIILSDELPDQLAVSEALATHFGSKVVIKTSVREHRAEWLDLAKLNTNNALKTKLGD 412 Query: 359 EISHQMILKDFTK--KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + RIE +D SH MG + +G VV + G + YR++ Sbjct: 413 YLELHARFGALKDVLTEVTDRTIDRIECFDISHTMGEATIGSCVVFDQGGSRRRDYRQYA 472 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 +H + DD A M+ VL RR+ + PD++++DGGKGQL Sbjct: 473 IHD--IVGGDDYAAMKQVLTRRYKK-------------------QPLPDLLLIDGGKGQL 511 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 A+ VL +L + +IS+AKG R AG+E E L L M L+ + +RDE Sbjct: 512 GIAKEVLTELGILGDTLLISVAKGEGRKAGLEVLHFIDHEPLDLPMDSKALHLLMHIRDE 571 Query: 537 AHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 AHRFAIT HRK+R K+ + S L+ I G+G R+R LL FG ++ + +S + LA ++GI Sbjct: 572 AHRFAITAHRKKRDKRRSSSVLEVIPGLGEKRRRDLLNHFGGMQQLLGASQQELAGVQGI 631 Query: 596 SKKIACKIYNHFHK 609 +A +Y H+ Sbjct: 632 GPVLAKTVYKVLHE 645 >gi|226326298|ref|ZP_03801816.1| hypothetical protein PROPEN_00146 [Proteus penneri ATCC 35198] gi|225205249|gb|EEG87603.1| hypothetical protein PROPEN_00146 [Proteus penneri ATCC 35198] Length = 607 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 208/610 (34%), Positives = 338/610 (55%), Gaps = 31/610 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++ + PGVY+M D V+YVGKA +L+KR+ SY + ++ + ++ I NI T+T Sbjct: 13 RITDKPGVYRMYDATDTVIYVGKAKDLKKRLSSYFRTQVNSRKTEALVKCIANIDVTITH 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLE + I+R +PR+N+LLRDDKS+PYI ++ K P + +R + +G YFGP Sbjct: 73 TETEALLLEHSYIQRYQPRYNVLLRDDKSYPYIYLS-GDKHPRIASYRGAKHAKGEYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183 F + AV +T+ +Q+ F +R C DSV+R+R+RPCL +QI RC PC +S E+Y + Sbjct: 132 FPNSFAVRETLALMQKLFPIRQCEDSVYRNRSRPCLQYQIGRCLAPCVKGYVSDEEYAQQ 191 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NR 241 V+ + FLSG + + + + + M +A+ + +E A RD++ A+ + + Sbjct: 192 VNYVRLFLSGDDTQVIDGLVKRMEEASQELRFEEAARIRDQIQAVRQVTEKQFVANIGDD 251 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----K 297 +D S+ N +AC+ FF G+ G+ ++F K + ++ +++ F+ QFY + Sbjct: 252 LDVISVAFNGAIACVYVLFFRQGKVLGSRSYFPKVPANTSIDEVVQTFIGQFYLQGSAIR 311 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P ILL E+ +L S G K++I +G++ + ++ A NA + K Sbjct: 312 TLPTEILLDFNLEDKVILSESISSIAGRKIQIQTKPRGDRARYLKLARTNAATALASKQV 371 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + + + I R+E +D SH MG V VV NG +K++YR++N+ Sbjct: 372 EQSTISQRYTSLMSLLDMKEIK-RMECFDISHTMGEQTVASCVVFDMNGPLKSEYRRYNI 430 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + + DD A M VL RR+ + +++ + PD++ +DGGKGQL+ Sbjct: 431 --SGITPGDDYAAMNQVLTRRYGKPLEDSK---------------VPDIIFIDGGKGQLA 473 Query: 478 AAQGVLKKLNV---ENRITIISIAKGPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQRL 533 A V LNV ++ +I +AKG R AG+E FFV +GE + L P L+ IQ + Sbjct: 474 QAIEVFDSLNVNWDKSHPKLIGVAKGSDRKAGLETLFFVPEGEGMALPSDSPALHLIQHI 533 Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDE+HR AIT HR+RR K S L+ I G+GP R+++LL+ G ++ + +S E +A + Sbjct: 534 RDESHRHAITGHRQRRAKVKNTSSLESIEGVGPKRRQMLLKYMGGLQALRDASVEEIAKV 593 Query: 593 EGISKKIACK 602 IS +A K Sbjct: 594 PTISTALAEK 603 >gi|255282575|ref|ZP_05347130.1| excinuclease ABC subunit C [Bryantella formatexigens DSM 14469] gi|255266868|gb|EET60073.1| excinuclease ABC subunit C [Bryantella formatexigens DSM 14469] Length = 612 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 205/619 (33%), Positives = 332/619 (53%), Gaps = 25/619 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M D ++YVGKA +L+ R++ Y S+ N +I M+++I+ + Sbjct: 7 ELKKLPAKPGVYIMHDEKDAIIYVGKAVSLKNRVRQYFQSSRNKGVKIEQMVTKISRFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK +P++N +L+DDK++P+I +T P + R + Sbjct: 67 IVTDSELEALVLECNLIKEHRPKYNTMLKDDKTYPFIKVTVNEPFPRVLFSRTMKKDKSR 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV+ TI + + + LR+C+ + R + RPCL + IK+C PC G +S E Sbjct: 127 YFGPYTSAGAVKDTIELINKLYKLRTCSRVLPRDTGKERPCLNYHIKQCQAPCQGYVSQE 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + V +A +FL+G + + + MN+A + D+E+AI R+ LA++ + Sbjct: 187 EYAKRVAQAVEFLNGNYKPVLKMLEERMNEAAERLDFEAAIEQRELLASVKQVAQKQKIT 246 Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D +L + A +Q F G+ G F+L+ T IL FL+QFY+ Sbjct: 247 SGDGEDKDVIALAADDRDAVVQVFFVRSGRLIGRDHFYLRVAPHDTPGAILDSFLKQFYS 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350 P P I+L EE E+ ++E K+ G +V + VPK+G K K++E A NA + Sbjct: 307 GTPFIPHEIMLQEEIEDKEIIEEWLTKRRGGRVYLRVPKKGTKEKLVELAAQNARMVLTQ 366 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E +K+ L ++ R+E +D S+I G +VG M+V + + Sbjct: 367 DREKIKREEGRTIGAMKEIASLLGLENVV-RVEAFDISNISGFESVGSMIVYEKGRPKTS 425 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YRKF + VK DD A M VL RRF+ + E Q SF +PD++++D Sbjct: 426 DYRKFKIKT--VKGPDDYASMEEVLGRRFAHGLAEREE-----NAQFGSFSRFPDLIMMD 478 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ++ A VL +L+++ I + + K + E + ++ I Sbjct: 479 GGKGQVNVALRVLDELHLD--IPVCGMVKDDNHRTRG---LYYQNEEVPIDRSSEGFRLI 533 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DEAHRFAI HR R K +S LD+I GIG R++ LL+ F +++ I +S E L Sbjct: 534 TRIQDEAHRFAIEYHRSLRSKQQVHSVLDDIEGIGETRRKALLRRFKSLEAIRDASVEEL 593 Query: 590 ASIEGISKKIACKIYNHFH 608 AS E ++++ A K+Y+ FH Sbjct: 594 ASTETMNRQAAQKVYDFFH 612 >gi|327330672|gb|EGE72418.1| excinuclease ABC subunit C [Propionibacterium acnes HL097PA1] Length = 672 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 191/646 (29%), Positives = 316/646 (48%), Gaps = 45/646 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D G+V+YVGKA NL+ R+ SY + R M++ ++++TV Sbjct: 13 TIPTQPGVYRFSDAHGQVIYVGKAKNLRNRLNSYFQDISALHPRTQRMVTTAAHVQWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 EVE+L LE IK PRFN++ RDDKS+P++ T + P ++ R + Y+G Sbjct: 73 QNEVESLQLEYTWIKEFDPRFNVMYRDDKSYPWLCFTWTDEYPRVFVGRGAHHKGWRYYG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180 PF A+ + +L R F +RSC+ VF +++ RPCLL I +CS PC I+SE + Sbjct: 133 PFGQAWAIRDAVETLLRVFPMRSCSTGVFNRAKNQGRPCLLGYIGKCSAPCVERITSEAH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E E F++G + +++ M +A+ ++E A + RD L ALS N + Sbjct: 193 REIADEFCDFMAGRTTKIVKRLESQMAEASENLEFERAAVIRDSLGALSKTLERNAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294 D S+ + ++ G+ RG + ++ A+++ FL Q Y Sbjct: 253 DGTDADVISMALDPLEVGVKIFHVRGGRIRGERGWVADRADDADEAELMEIFLTQLYGVN 312 Query: 295 ----------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344 P +L+S E ++ + G V+I VP++G+K +++ Sbjct: 313 ASDGQVRDDGHGNAVPPLVLVSAEPTNPDVMSTILSSERGSHVEIRVPRRGDKATLMDTV 372 Query: 345 LINAHRSHTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMV 400 NA + Q S L++ + L P RIE YD SHI G + VG MV Sbjct: 373 TRNAQETLAQHKLKRASDLATRTRALEEIQESLGLDRAPLRIESYDISHIQGTNVVGSMV 432 Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE------------- 447 V + K++YR+F++ + DD A M VL RR +LI++ + Sbjct: 433 VFEDGMPRKSEYRRFSIKG--FEGSDDFAAMHEVLSRRLRRLIEDRDAMAAAQTPDGDVG 490 Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507 +L F P ++++DGG Q+ AAQ VL++ +E+ I + +AK + Sbjct: 491 SLIDPTTGSPRKFAYAPHLIVVDGGAPQVHAAQQVLEEFGLEDEIALCGLAKRLE----- 545 Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPL 566 E + + ++L LY +QRLRDEAHRFAIT HR +R KA S LD ++G+G Sbjct: 546 EVWLPDEEWPVILPRTSEGLYLLQRLRDEAHRFAITFHRSKRSKAMVESVLDGVSGLGET 605 Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 R++ L+ FG+V+ + +++ + + + G K+A ++ ++ Sbjct: 606 RRKALVSHFGSVRSLRKATVDDIVEVPGFGPKLAGEVVAALSQDKP 651 >gi|289426287|ref|ZP_06428033.1| excinuclease ABC, C subunit [Propionibacterium acnes SK187] gi|289153452|gb|EFD02167.1| excinuclease ABC, C subunit [Propionibacterium acnes SK187] Length = 672 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 191/646 (29%), Positives = 317/646 (49%), Gaps = 45/646 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D G+V+YVGKA NL+ R+ SY + R M++ ++++TV Sbjct: 13 TIPTQPGVYRFSDAHGQVIYVGKAKNLRNRLNSYFQDISALHPRTQRMVTTAAHVQWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 EVE+L LE IK PRFN++ RDDKS+P++ T + P ++ R + Y+G Sbjct: 73 QNEVESLQLEYTWIKEFDPRFNVMYRDDKSYPWLCFTWTDEYPRVFVGRGAHHKGWRYYG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180 PF A+ T+ +L R F +RSC+ VF +++ RPCLL I +CS PC I+SE + Sbjct: 133 PFGQAWAIRNTVETLLRVFPMRSCSTGVFNRAKNQGRPCLLGYIGKCSAPCVERITSEAH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E E F++G + +++ M +A+ ++E A + RD L ALS N + Sbjct: 193 REIADEFCDFMAGRTTKIVKRLESQMAEASENLEFERAAVIRDSLGALSKTLERNAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294 D S+ + ++ G+ RG + ++ A+++ FL Q Y Sbjct: 253 DGTDADVISMALDPLEVGVKIFHVRGGRIRGERGWVADRADDADEAELMETFLTQLYGVN 312 Query: 295 ----------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344 P +L+S E ++ + G V+I VP++G+K +++ Sbjct: 313 ASDGQVRDDGHGNAVPPLVLVSAEPTNPDVMSTILSSERGSHVEIRVPRRGDKATLMDTV 372 Query: 345 LINAHRSHTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMV 400 NA + Q S L++ + L P R+E YD SHI G + VG MV Sbjct: 373 TRNAQETLAQHKLKRASDLATRTRALEEIQESLGLDRAPLRMESYDISHIQGTNVVGSMV 432 Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE------------- 447 V + K++YR+F++ + DD A M VL RR +LI++ + Sbjct: 433 VFEDGMPRKSEYRRFSIKG--FEGSDDFAAMHEVLSRRLRRLIEDRDAMAAAQTPDGDVG 490 Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507 +L F P ++++DGG Q+ AAQ VL++ +E+ I + +AK + Sbjct: 491 SLIDPTTGSPRKFAYAPHLIVVDGGAPQVHAAQQVLEEFGLEDEIALCGLAKRLE----- 545 Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPL 566 E + + ++L LY +QRLRDEAHRFAIT HR +R KA S LD ++G+G Sbjct: 546 EVWLPDEEWPVILPRTSEGLYLLQRLRDEAHRFAITFHRSKRSKAMVESVLDGVSGLGET 605 Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 R++ L+ FG+V+ + +++ + + + G K+A ++ ++ Sbjct: 606 RRKALVSHFGSVRSLRKATVDDIVEVPGFGPKLAGEVVAALSQDKP 651 >gi|294339725|emb|CAZ88087.1| putative UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C) [Thiomonas sp. 3As] Length = 647 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 200/631 (31%), Positives = 319/631 (50%), Gaps = 34/631 (5%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 P PGVY+ G +LYVGKA +L+KR+ SY ++ RI M+S+I+ + TVT TE Sbjct: 22 PHLPGVYRYFAADGSLLYVGKARDLRKRVSSYFQKDHGGTRIGLMVSRIHRLDTTVTRTE 81 Query: 67 VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126 EALLLE N+IK PR+NIL RDDKS+PY+ IT H+ P + +R ++ + YFGP+ Sbjct: 82 AEALLLENNLIKTQHPRYNILFRDDKSYPYLQITTAHEYPRVAYYRGATDRKQQYFGPYP 141 Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186 + +V+++I LQ+ F LR+C D+VF +R+RPCLL QI RC+ PC G+IS+ Y V Sbjct: 142 NAWSVKESIAVLQKVFQLRTCEDTVFSNRSRPCLLHQIHRCTAPCVGKISAADYARDVQH 201 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMD 243 A +FL G + + + M + +E A + RD++AALS + +D Sbjct: 202 AVRFLRGDHGVVMGDLQLQMQSLSDALRFEEAAVLRDQIAALSGVLQQQSMEVGSAEDVD 261 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT-----DSESTNAQIL------------ 286 ++ AC+ G++ G +F + A + Sbjct: 262 ILAVALKGGRACVNLAMVRGGRHLGDRAYFPSQVQAALELGDDLADGVAPEQGAPGQAAQ 321 Query: 287 ---SYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQ 343 F+ Q Y P ++ E L + + G++++ +G++R +E Sbjct: 322 RVLQAFVAQHYLQMAPPPVLVCDLPVEPELLDALG--EHAGHRMQQVTQPRGQRRDWLEM 379 Query: 344 ALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPK---RIEIYDNSHIMGCSAVGCMV 400 A A + T+ L+ E S + + L R E +D SH G + V Sbjct: 380 AQKGAQIALTRLLAEEGSQRERTFALAQALGLGAEQAEGLRAECFDISHTAGEATQASCV 439 Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSF 460 V E+ +QYR+F ++ + DD A MR VL RR+ ++ + + F + S Sbjct: 440 VYAEHAMQPSQYRRFRIND--ITPGDDYAAMRQVLTRRYKRVAEAQAQGAFAADGETPSD 497 Query: 461 PSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA-LV 519 PD+V++DGG+GQ++ A+ V +L ++ + I+ + KG R G+E+ G L Sbjct: 498 ARLPDLVLVDGGRGQVTMAREVFTELGLDLSV-IVGVEKGEGRKVGLEELVFADGRPKLT 556 Query: 520 LNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--SPLDEINGIGPLRKRLLLQSFGT 577 L L + ++RDEAHRFAIT R R K S L++I GIGP R+ LL FG Sbjct: 557 LPADSAALMLVAQIRDEAHRFAITGMRAARAKVRTGGSRLEDIPGIGPKRRAKLLARFGG 616 Query: 578 VKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ + +S + L +++GIS+++A +Y H Sbjct: 617 IRGVEAASEDDLMTVDGISRELAHLLYKALH 647 >gi|171316977|ref|ZP_02906184.1| excinuclease ABC, C subunit [Burkholderia ambifaria MEX-5] gi|171097901|gb|EDT42721.1| excinuclease ABC, C subunit [Burkholderia ambifaria MEX-5] Length = 682 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 216/669 (32%), Positives = 331/669 (49%), Gaps = 70/669 (10%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D AG VLYVGKA +L+KR+ SY + RI M+++I I TVT Sbjct: 19 QLPHMPGVYRYYDTAGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H+ P + +R S Q YFGP Sbjct: 79 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-AHRFPRMAYYRGSVDKQNQYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RC+ PC G IS++ Y V Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVGAISADDYAIDV 197 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 A +FL G + +++ + M+ + +E A R+++++L+ + + Sbjct: 198 SNAARFLLGRQSEVMKELEQKMHGFAAELKFEQAAAVRNQMSSLATVLHQQAIEVGSDSD 257 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE---------------------- 279 D ++ C+ G++ G +F Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVESALTLAEGGLGDEADGVDGGDEA 317 Query: 280 --------------------------STNAQILSYFLRQFYTDKPCPENILLSEEAEETS 313 S A++L F+ Q Y P +++S Sbjct: 318 AAALPGEPADEAAAARDGAASGVAGASVEAEVLDAFIAQHYLGNRVPPVLVVSHAPASRD 377 Query: 314 LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKF 373 LLE+ +Q G+KV + QG++R + A NA + + LS + S Q + + Sbjct: 378 LLEL-LSEQAGHKVSLVRQPQGQRRAWLSMAEQNARLALARLLSEQGSQQARTRALAETL 436 Query: 374 ALPHI---PKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAM 430 + RIE +D SH MG + VV + +YR++N+ + DD A Sbjct: 437 SFECDDLAMLRIECFDISHTMGEATQASCVVYHHHKMQSGEYRRYNI--TGITPGDDYAA 494 Query: 431 MRMVLERRFSQLIK---------NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 MR VL RR+ ++++ + ++ +Q + P++V++DGGKGQ+ A+ Sbjct: 495 MRQVLTRRYEKMVEQAAQAAAADDAAGIDGESTRQAEASSLLPNIVLIDGGKGQVEIARQ 554 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRF 540 V +L ++ + ++ +AKG R G+E G L L L + ++RDEAHRF Sbjct: 555 VFTELGLDTSM-LVGVAKGEGRKVGLETLVFADGRTPLELGKESAALMLVAQIRDEAHRF 613 Query: 541 AITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AIT R +R KA S L+E+ GIG R++ LL FG ++ + +S E LAS++GIS + Sbjct: 614 AITGMRAKRAKARQTSRLEELEGIGAKRRQRLLARFGGLRGVVAASVEELASVDGISHAL 673 Query: 600 ACKIYNHFH 608 A +IY H Sbjct: 674 AEQIYKQLH 682 >gi|115351073|ref|YP_772912.1| excinuclease ABC subunit C [Burkholderia ambifaria AMMD] gi|122323647|sp|Q0BGZ5|UVRC_BURCM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|115281061|gb|ABI86578.1| Excinuclease ABC subunit C [Burkholderia ambifaria AMMD] Length = 684 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 216/671 (32%), Positives = 330/671 (49%), Gaps = 72/671 (10%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D AG VLYVGKA +L+KR+ SY + RI M+++I I TVT Sbjct: 19 QLPHMPGVYRYYDTAGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H+ P + +R S Q YFGP Sbjct: 79 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-AHRFPRMAYYRGSVDKQNQYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RC+ PC G IS++ Y V Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVGAISADDYAIDV 197 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 A +FL G + +++ + M+ + +E A R+++++L+ + + Sbjct: 198 SNAARFLLGRQSEVMKELEQKMHAFAAELKFEQAAAVRNQMSSLATVLHQQAIEVGSDSD 257 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS----------------------- 278 D ++ C+ G++ G +F Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVESALTLAEGGLGDEADGADGADEA 317 Query: 279 ---------------------------ESTNAQILSYFLRQFYTDKPCPENILLSEEAEE 311 S A++L F+ Q Y P +++S Sbjct: 318 AAALPGEPADEAAAARDAASSASGASSASVEAEVLDAFIAQHYLGNRVPPVLVVSHAPAS 377 Query: 312 TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTK 371 LLE+ +Q G+KV + QG++R + A NA + + LS + S Q + + Sbjct: 378 RDLLEL-LSEQAGHKVSLVRQPQGQRRAWLSMAEQNARLALARLLSEQGSQQARTRALAE 436 Query: 372 KFALPHI---PKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDC 428 + RIE +D SH MG + VV + +YR++N+ + DD Sbjct: 437 TLSFECDDLAMLRIECFDISHTMGEATQASCVVYHHHKMQSGEYRRYNI--TGITPGDDY 494 Query: 429 AMMRMVLERRFSQLIK---------NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 A MR VL RR+ ++++ ++ ++ + P++V++DGGKGQ+ A Sbjct: 495 AAMRQVLTRRYEKMVEQAAQAAAADAAAGIDGESTREAEASSLLPNIVLIDGGKGQVEIA 554 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAH 538 + V +L ++ + ++ +AKG R G+E G L L L + ++RDEAH Sbjct: 555 RQVFTELGLDTSM-LVGVAKGEGRKVGLETLVFADGRTPLELGKESAALMLVAQIRDEAH 613 Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT R +R KA S L+E+ GIG R++ LL FG ++ + +S E LAS+EGIS Sbjct: 614 RFAITGMRAKRAKARQTSRLEELEGIGAKRRQRLLARFGGLRGVVAASVEELASVEGISH 673 Query: 598 KIACKIYNHFH 608 +A +IY H Sbjct: 674 ALAEQIYKQLH 684 >gi|302533805|ref|ZP_07286147.1| excinuclease ABC, C subunit [Streptomyces sp. C] gi|302442700|gb|EFL14516.1| excinuclease ABC, C subunit [Streptomyces sp. C] Length = 684 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 180/622 (28%), Positives = 311/622 (50%), Gaps = 32/622 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 Q+P+ PGVY+ D RV+YVGKA +L++R+ +Y R M++ ++ +TV Sbjct: 30 QVPDSPGVYKFRDEHRRVIYVGKAKSLRQRLANYFQDIAGLHPRTATMVTTAASVEWTVV 89 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE + IK PRFN+ RDDKS+P + +T + P + R YFG Sbjct: 90 STEVEALQLEYSWIKEFDPRFNVKYRDDKSYPSLAVTMNEEYPRVQVMRGPKKKGVRYFG 149 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P+ A+ +T++ + R F +R+C+ VF+ RPCLL I +CS PC G ++ E++ Sbjct: 150 PYGHAWAIRETVDLMLRVFPVRTCSAGVFKRSAQIGRPCLLGYIGKCSAPCVGRVTPEEH 209 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 E + F++G ++ + M++A + +YE A RD + AL N + Sbjct: 210 RELAEDFCDFMAGRTGTYLSRLEKQMHEAAEEMEYERAARLRDDIGALRRAMEKNAVVLA 269 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD- 296 D ++ ++ A +Q G+ RG + A ++ + L+Q Y + Sbjct: 270 DATDADLIAVAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEAVDTAGLVEHALQQLYGEE 329 Query: 297 --KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 + P+ +L+ E+ L + G V + +P++G+K+ ++E NA +S Sbjct: 330 KGEAVPKEVLVPALPEDAPALGQWLAGRRGSGVSLRIPQRGDKKALMETVHRNALQSLAL 389 Query: 355 KLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + + L++ + L P RIE +D SH+ G V MVV + K+ Sbjct: 390 HKTKRAGDLTTRSRALEEIAEALELDGAPLRIECFDISHLQGDDVVASMVVFEDGLARKS 449 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN---------EENLNFHPKKQEYSFP 461 +YR+F + + QDD M V+ RRF + ++ E+ + F Sbjct: 450 EYRRFQVKS--FEGQDDVRSMHEVVSRRFRRYLQEKLKTGEWDAEDGEVPEDDGRPKRFA 507 Query: 462 SWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLN 521 P +V++DGG+ Q++AA+ L++L +++ + + +AK + E + + + +VL Sbjct: 508 YPPQLVVVDGGQPQVAAAKRALEELGIDD-VAVCGLAKRLE-----EVWLPGEDDPVVLP 561 Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKM 580 LY +QR+RDEAHRFAI R +R K SPLD++ G+G RK L++ FG+VK Sbjct: 562 RTSEGLYLLQRVRDEAHRFAIQYQRNKRGKRLRVSPLDDVPGLGESRKLALVKHFGSVKK 621 Query: 581 ISRSSPETLASIEGISKKIACK 602 + +++ + + + GI +K A Sbjct: 622 LRQATIDQICEVPGIGRKTAET 643 >gi|119370546|sp|Q6A9J8|UVRC_PROAC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|313813155|gb|EFS50869.1| excinuclease ABC subunit C [Propionibacterium acnes HL025PA1] gi|315107006|gb|EFT78982.1| excinuclease ABC subunit C [Propionibacterium acnes HL030PA1] Length = 672 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 191/646 (29%), Positives = 317/646 (49%), Gaps = 45/646 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D G+V+YVGKA NL+ R+ SY + R M++ ++++TV Sbjct: 13 TIPTQPGVYRFSDAHGQVIYVGKAKNLRNRLNSYFQDISALHPRTQRMVTTAAHVQWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 EVE+L LE IK PRFN++ RDDKS+P++ T + P ++ R + Y+G Sbjct: 73 QNEVESLQLEYTWIKEFDPRFNVMYRDDKSYPWLCFTWTDEYPRVFVGRGAHHKGWRYYG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180 PF A+ T+ +L R F +RSC+ VF +++ RPCLL I +CS PC I+SE + Sbjct: 133 PFGQAWAIRDTVETLLRVFPMRSCSTGVFNRAKNQGRPCLLGYIGKCSAPCVERITSEAH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E E F++G + +++ M +A+ ++E A + RD L ALS N + Sbjct: 193 REIADEFCDFMAGRTTKIVKRLESQMAEASENLEFERAAVIRDSLGALSKTLERNAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294 D S+ + ++ G+ RG + ++ A+++ FL Q Y Sbjct: 253 DGTDADVISMALDPLEVGVKIFHVRGGRIRGERGWVADRADDADEAELMETFLTQLYGVN 312 Query: 295 ----------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344 P +L+S E ++ + G V+I VP++G+K +++ Sbjct: 313 ASDGQVRDDGHGNAVPPLVLVSAEPTNPDVMSTILSSERGSHVEIRVPRRGDKATLMDTV 372 Query: 345 LINAHRSHTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMV 400 NA + Q S L++ + L P R+E YD SHI G + VG MV Sbjct: 373 TRNAQETLAQHKLKRASDLATRTRALEEIQESLGLDRAPLRMESYDISHIQGTNVVGSMV 432 Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE------------- 447 V + K++YR+F++ + DD A M VL RR +LI++ + Sbjct: 433 VFEDGMPRKSEYRRFSIKG--FEGSDDFAAMHEVLSRRLRRLIEDRDAMAAAQTPDGDVG 490 Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507 +L F P ++++DGG Q+ AAQ VL++ +E+ I + +AK + Sbjct: 491 SLIDPTTGSPRKFAYAPHLIVVDGGAPQVHAAQQVLEEFGLEDEIALCGLAKRLE----- 545 Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPL 566 E + + ++L LY +QRLRDEAHRFAIT HR +R KA S LD ++G+G Sbjct: 546 EVWLPDEEWPVILPRTSEGLYLLQRLRDEAHRFAITFHRSKRSKAMVESVLDGVSGLGET 605 Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 R++ L+ FG+V+ + +++ + + + G K+A ++ ++ Sbjct: 606 RRKALVSHFGSVRSLRKATVDDIVEVPGFGPKLAGEVVAALSQDKP 651 >gi|50842299|ref|YP_055526.1| excinuclease ABC subunit C [Propionibacterium acnes KPA171202] gi|50839901|gb|AAT82568.1| excinuclease ABC subunit C [Propionibacterium acnes KPA171202] Length = 686 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 191/646 (29%), Positives = 317/646 (49%), Gaps = 45/646 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D G+V+YVGKA NL+ R+ SY + R M++ ++++TV Sbjct: 27 TIPTQPGVYRFSDAHGQVIYVGKAKNLRNRLNSYFQDISALHPRTQRMVTTAAHVQWTVV 86 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 EVE+L LE IK PRFN++ RDDKS+P++ T + P ++ R + Y+G Sbjct: 87 QNEVESLQLEYTWIKEFDPRFNVMYRDDKSYPWLCFTWTDEYPRVFVGRGAHHKGWRYYG 146 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180 PF A+ T+ +L R F +RSC+ VF +++ RPCLL I +CS PC I+SE + Sbjct: 147 PFGQAWAIRDTVETLLRVFPMRSCSTGVFNRAKNQGRPCLLGYIGKCSAPCVERITSEAH 206 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E E F++G + +++ M +A+ ++E A + RD L ALS N + Sbjct: 207 REIADEFCDFMAGRTTKIVKRLESQMAEASENLEFERAAVIRDSLGALSKTLERNAVVLG 266 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294 D S+ + ++ G+ RG + ++ A+++ FL Q Y Sbjct: 267 DGTDADVISMALDPLEVGVKIFHVRGGRIRGERGWVADRADDADEAELMETFLTQLYGVN 326 Query: 295 ----------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344 P +L+S E ++ + G V+I VP++G+K +++ Sbjct: 327 ASDGQVRDDGHGNAVPPLVLVSAEPTNPDVMSTILSSERGSHVEIRVPRRGDKATLMDTV 386 Query: 345 LINAHRSHTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMV 400 NA + Q S L++ + L P R+E YD SHI G + VG MV Sbjct: 387 TRNAQETLAQHKLKRASDLATRTRALEEIQESLGLDRAPLRMESYDISHIQGTNVVGSMV 446 Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE------------- 447 V + K++YR+F++ + DD A M VL RR +LI++ + Sbjct: 447 VFEDGMPRKSEYRRFSIKG--FEGSDDFAAMHEVLSRRLRRLIEDRDAMAAAQTPDGDVG 504 Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507 +L F P ++++DGG Q+ AAQ VL++ +E+ I + +AK + Sbjct: 505 SLIDPTTGSPRKFAYAPHLIVVDGGAPQVHAAQQVLEEFGLEDEIALCGLAKRLE----- 559 Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPL 566 E + + ++L LY +QRLRDEAHRFAIT HR +R KA S LD ++G+G Sbjct: 560 EVWLPDEEWPVILPRTSEGLYLLQRLRDEAHRFAITFHRSKRSKAMVESVLDGVSGLGET 619 Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 R++ L+ FG+V+ + +++ + + + G K+A ++ ++ Sbjct: 620 RRKALVSHFGSVRSLRKATVDDIVEVPGFGPKLAGEVVAALSQDKP 665 >gi|271500031|ref|YP_003333056.1| excinuclease ABC subunit C [Dickeya dadantii Ech586] gi|270343586|gb|ACZ76351.1| excinuclease ABC, C subunit [Dickeya dadantii Ech586] Length = 610 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 211/618 (34%), Positives = 337/618 (54%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D + V+YVGKA +L+KR+ SY ++ + + ++ I I T+ Sbjct: 11 LKTVTSQPGVYRMYDASDTVIYVGKAKDLKKRLSSYFRAHVASRKTEALVKSIRQIDVTI 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IKR +PR+N+LLRDDKS+P I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKRYQPRYNVLLRDDKSYPMIFLS-GDTHPRLSVHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + +AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGNAVRETLMLLQKLFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVNGLVSEEEYQ 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IY 239 + V + FLSG + + ++ M A+ +E A RD++ A+ + Sbjct: 190 QQVDYVRLFLSGKDQQVLTRLIERMEAASHALKFEEAARIRDQIQAVRRVTEKQFVSGDG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + A+++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKILGSRSYFPKVPGGTELAEVVQTFVGQFYLQGSV 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P +ILL E LL S +Q G K++I +G++ + ++ A NAH + T K Sbjct: 310 SRTLPSDILLDFSLPEHQLLAESLTEQAGRKIQIQTRPRGDRARYLKLARTNAHTALTTK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + Q L + R+E +D SH MG V VV +G ++++YR++ Sbjct: 370 LSQQSTIQQRLTALASVLGIE-KINRMECFDISHTMGEQTVASCVVFNADGPLRSEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYDKSIDESK---------------IPDVIVIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQ 531 L+ A+ V L+V R ++ +AKG R AG+E F + GE + L P L+ IQ Sbjct: 472 LAQARDVFASLHVTWDTTRPVLLGVAKGSDRKAGLETLFFEATGEGVALPADSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RD++H AI+ HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDDSHNHAISGHRKQRAKVKSTSSLETIEGVGPKRRQMLLKYMGGLQPLMNASVEDIA 591 Query: 591 SIEGISKKIACKIYNHFH 608 ++ GIS +A KI++ Sbjct: 592 NVPGISHALAEKIFHALK 609 >gi|314987670|gb|EFT31761.1| excinuclease ABC subunit C [Propionibacterium acnes HL005PA2] gi|314990150|gb|EFT34241.1| excinuclease ABC subunit C [Propionibacterium acnes HL005PA3] Length = 672 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 190/646 (29%), Positives = 317/646 (49%), Gaps = 45/646 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D G+V+YVGKA NL+ R+ SY + R M++ ++++TV Sbjct: 13 TIPTQPGVYRFSDAHGQVIYVGKAKNLRNRLNSYFQDISALHPRTQRMVTTAAHVQWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 EVE+L LE IK PRFN++ RDDKS+P++ T + P ++ R + Y+G Sbjct: 73 QNEVESLQLEYTWIKEFDPRFNVMYRDDKSYPWLCFTWTDEYPRVFVGRGAHHKGWRYYG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180 PF A+ T+ +L R F +RSC+ VF +++ RPCLL I +CS PC I+S+ + Sbjct: 133 PFGQAWAIRDTVETLLRVFPMRSCSTGVFNRAKNQGRPCLLGYIGKCSAPCVERITSQAH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E E F++G + +++ M +A+ ++E A + RD L ALS N + Sbjct: 193 REIADEFCDFMAGRTTKIVKRLESQMAEASENLEFERAAVIRDSLGALSKTLERNAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294 D S+ + ++ G+ RG + ++ A+++ FL Q Y Sbjct: 253 DGTDADVISMALDPLEVGVKIFHVRGGRIRGERGWVADRADDADEAELMETFLTQLYGVN 312 Query: 295 ----------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344 P +++S E ++ + G V+I VP++G+K +++ Sbjct: 313 ASDGQVRDDGHGNAVPPLVIVSAEPTNPDVMSTILSSERGSHVEIRVPRRGDKATLMDTV 372 Query: 345 LINAHRSHTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMV 400 NA + Q S L++ + L P RIE YD SHI G + VG MV Sbjct: 373 TRNAQETLAQHKLKRASDLATRTRALEEIQESLGLGRAPLRIESYDISHIQGTNVVGSMV 432 Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE------------- 447 V + K++YR+F++ + DD A M VL RR +LI++ + Sbjct: 433 VFEDGMPRKSEYRRFSIKG--FEGSDDFAAMHEVLSRRLRRLIEDRDAMAAAQTPDGDVG 490 Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507 +L F P ++++DGG Q+ AAQ VL++ +E+ I + +AK + Sbjct: 491 SLIDPTTGSPRKFAYAPHLIVVDGGAPQVHAAQQVLEEFGLEDEIALCGLAKRLE----- 545 Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPL 566 E + + ++L LY +QRLRDEAHRFAIT HR +R KA S LD ++G+G Sbjct: 546 EVWLPDEEWPVILPRTSEGLYLLQRLRDEAHRFAITFHRSKRSKAMVESVLDGVSGLGET 605 Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 R++ L+ FG+V+ + +++ + + + G K+A ++ ++ Sbjct: 606 RRKALVSHFGSVRSLRKATVDDIVEVPGFGPKLAGEVVAALSQDKP 651 >gi|293192767|ref|ZP_06609662.1| excinuclease ABC subunit C [Actinomyces odontolyticus F0309] gi|292820014|gb|EFF79012.1| excinuclease ABC subunit C [Actinomyces odontolyticus F0309] Length = 695 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 203/663 (30%), Positives = 322/663 (48%), Gaps = 61/663 (9%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA NL+ R+ +Y N R M++ + +++TV Sbjct: 37 DIPTSPGVYRFSDPQGRVIYVGKAKNLRNRLTNYFQDLANLHPRTQQMVTTASAVQWTVV 96 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +EVEAL LE IK PRFN++ +DDKS+PY+ ++ + P + R+ + YFG Sbjct: 97 RSEVEALTLEFTWIKEFNPRFNVMFKDDKSYPYLAVSMGERFPRVQVTRERKRVGSRYFG 156 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRT---RPCLLFQIKRCSGPCTGEISSEKY 180 P+ V A+ +TI+ L R F +RSC+ VF+ RPCLL I +C+ PC G IS E++ Sbjct: 157 PYTQVWAIRETIDQLLRVFPMRSCSAGVFQRAKAQGRPCLLGYIDKCAAPCVGRISMEEH 216 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E +F+ G + + M QA+++ ++E A RD + AL + N + + Sbjct: 217 RELAEGLCQFMEGRTGPVIRDLEEQMRQASMELNFEGAAKLRDDVKALRTVLERNAVVLD 276 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D FSL + A + G+ RGT + ++ + +A +++ L Q Y+ Sbjct: 277 DGSDADVFSLVSDDLDAAVHVFHVRGGRIRGTRGWVIERVDGADDAALMARLLEQVYSSA 336 Query: 298 P---------------------------CPENILLSEEAEETSLLEISFFKQYGYKVKIT 330 P +L+S E EE + + G V + Sbjct: 337 SMDEAGAGKAAKVAAVSVDDVAHTPTSAIPREVLVSVEPEEKETIARWLAEIRGASVSVH 396 Query: 331 VPKQGEKRKIIEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYD 386 VPK+G K +I++ NA ++ + + L+ + LP P RIE YD Sbjct: 397 VPKRGPKAQIMDTVTENARQALALHRTKRAGDITARSKALEQLAENLDLPGAPLRIECYD 456 Query: 387 NSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKN 445 SH G + V MVV + K+ YR +N+ DD + M VL RRFS+L+ Sbjct: 457 VSHTGGENQVASMVVFEDGMPRKDAYRTYNIRGEGGNGTPDDTSAMNEVLTRRFSRLLAE 516 Query: 446 EENLNFHPK--------------KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENR 491 E ++ + + F PD+V++DGG Q++AA+ L + + Sbjct: 517 EAGVDGEDEDGVAYASGPIDAMTGRPKRFSYRPDLVVVDGGLPQVNAARAALDAVGAD-- 574 Query: 492 ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK 551 + ++ +AK + E + + L+L LY +Q LRDE+HRFAIT HRKRR K Sbjct: 575 VPVVGLAKRLE-----EVWIPGEDFPLILPRTSEALYLLQYLRDESHRFAITKHRKRRSK 629 Query: 552 A-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 A S LD I G+GP R+ LL+ FG+VK I ++PE +A ++G+ +A I + + Sbjct: 630 AQRRSVLDSIPGLGPARQAALLKHFGSVKRIREATPEQIAEVKGVGLGLARTIRDRLATS 689 Query: 611 TSH 613 + Sbjct: 690 SRE 692 >gi|251789133|ref|YP_003003854.1| excinuclease ABC subunit C [Dickeya zeae Ech1591] gi|247537754|gb|ACT06375.1| excinuclease ABC, C subunit [Dickeya zeae Ech1591] Length = 610 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 212/618 (34%), Positives = 335/618 (54%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D + V+YVGKA +L+KR+ SY ++ + + ++ I I T+ Sbjct: 11 LKTVTSQPGVYRMYDASDTVIYVGKAKDLKKRLSSYFRAHVASRKTEALVKSIRQIDVTI 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IKR +PR+N+LLRDDKS+P I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKRYQPRYNVLLRDDKSYPLIFLS-GDTHPRLSVHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + +AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E Y Sbjct: 130 GPFPNGNAVRETLMLLQKLFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVSGLVSEEDYQ 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IY 239 + V + FLSG + + ++ M A+ +E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDQQVLTRLVERMEAASHALKFEDAARIRDQIQAVRRVTEKQFVSGDG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F GQ G+ ++F K + A+++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGQVLGSRSYFPKVPGGTELAEVVQTFVGQFYLQGSA 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P +ILL E LL S +Q G K++I +G++ + ++ A NAH + K Sbjct: 310 SRTLPSDILLDFSLPEYQLLAESLSEQAGRKIQIQTRPRGDRARYLKLARTNAHTALATK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + Q L + R+E +D SH MG V VV +G ++++YR++ Sbjct: 370 LSQQSTVQQRLTALASVLEIE-KINRMECFDISHTMGEQTVASCVVFNADGPLRSEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKSIDESK---------------IPDVIVIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQ 531 L+ A+ V L V +NR ++ +AKG R AG+E F + GE + L P L+ IQ Sbjct: 472 LAQAKEVFASLQVSWDKNRPLLLGVAKGSDRKAGLETLFFEATGEGVALPADSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RD++H AI+ HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDDSHNHAISGHRKQRAKVKSTSSLETIEGVGPKRRQMLLKYMGGLQPLMNASIEDIA 591 Query: 591 SIEGISKKIACKIYNHFH 608 + GIS +A KI++ Sbjct: 592 QVPGISHSLAEKIFHALK 609 >gi|154508836|ref|ZP_02044478.1| hypothetical protein ACTODO_01346 [Actinomyces odontolyticus ATCC 17982] gi|153798470|gb|EDN80890.1| hypothetical protein ACTODO_01346 [Actinomyces odontolyticus ATCC 17982] Length = 671 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 203/663 (30%), Positives = 322/663 (48%), Gaps = 61/663 (9%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA NL+ R+ +Y N R M++ + +++TV Sbjct: 13 DIPTSPGVYRFSDPQGRVIYVGKAKNLRNRLTNYFQDLANLHPRTQQMVTTASAVQWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +EVEAL LE IK PRFN++ +DDKS+PY+ ++ + P + R+ + YFG Sbjct: 73 RSEVEALTLEFTWIKEFNPRFNVMFKDDKSYPYLAVSMGERFPRVQVTRERKRVGSRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRT---RPCLLFQIKRCSGPCTGEISSEKY 180 P+ V A+ +TI+ L R F +RSC+ VF+ RPCLL I +C+ PC G IS E++ Sbjct: 133 PYTQVWAIRETIDQLLRVFPMRSCSAGVFQRAKAQGRPCLLGYIDKCAAPCVGRISMEEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E +F+ G + + M QA+++ ++E A RD + AL + N + + Sbjct: 193 RELAEGLCQFMEGRTGPVIRDLEEQMRQASMELNFERAAKLRDDVKALRTVLERNAVVLD 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D FSL + A + G+ RGT + ++ + +A +++ L Q Y+ Sbjct: 253 DGSDADVFSLVSDDLDAAVHVFHVRGGRIRGTRGWVIERVDGADDAALMARLLEQVYSSA 312 Query: 298 P---------------------------CPENILLSEEAEETSLLEISFFKQYGYKVKIT 330 P +L+S E EE + + G V + Sbjct: 313 STDEAGAGKAAKVAAVSVDDVAHTPTSAIPREVLVSVEPEEKETIARWLAEIRGASVSVH 372 Query: 331 VPKQGEKRKIIEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYD 386 VPK+G K +I++ NA ++ + + L+ + LP P RIE YD Sbjct: 373 VPKRGPKAQIMDTVTENARQALALHRTKRAGDITARSKALEQLAENLDLPGAPLRIECYD 432 Query: 387 NSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKN 445 SH G + V MVV + K+ YR +N+ DD + M VL RRFS+L+ Sbjct: 433 VSHTGGENQVASMVVFEDGIPRKDAYRTYNIRGEGGNGTPDDTSAMNEVLTRRFSRLLAE 492 Query: 446 EENLNFHPK--------------KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENR 491 E ++ + + F PD+V++DGG Q++AA+ L + + Sbjct: 493 EAGVDGEDEDGVAYASGPIDAMTGRPKRFSYRPDLVVVDGGLPQVNAARAALDAVGAD-- 550 Query: 492 ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK 551 + ++ +AK + E + + L+L LY +Q LRDE+HRFAIT HRKRR K Sbjct: 551 MPVVGLAKRLE-----EVWIPGEDFPLILPRTSEALYLLQYLRDESHRFAITKHRKRRSK 605 Query: 552 A-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 A S LD I G+GP R+ LL+ FG+VK I ++PE +A ++G+ +A I + + Sbjct: 606 AQRRSVLDSIPGLGPARQAALLKHFGSVKRIREATPEQIAEVKGVGLGLARTIRDRLTTS 665 Query: 611 TSH 613 + Sbjct: 666 SRE 668 >gi|242238893|ref|YP_002987074.1| excinuclease ABC subunit C [Dickeya dadantii Ech703] gi|242130950|gb|ACS85252.1| excinuclease ABC, C subunit [Dickeya dadantii Ech703] Length = 610 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 208/617 (33%), Positives = 340/617 (55%), Gaps = 31/617 (5%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + + PGVY+M D + V+YVGKA +L+KR+ SY ++ + + ++ I I T+T Sbjct: 12 KTVTSQPGVYRMYDASNTVIYVGKAKDLKKRLSSYFRTHVASRKTEALVKSIRQIDVTIT 71 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLE N IKR +PR+N+LLRDDKS+P I ++ P L HR + +G YFG Sbjct: 72 HTETEALLLEHNYIKRYQPRYNVLLRDDKSYPMIFLS-GDIHPRLSIHRGAKHAKGEYFG 130 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYME 182 PF + AV +T+ LQ+ F +R C ++V+R+R+RPCL +QI RC GPC +S ++Y + Sbjct: 131 PFPNGSAVRETLLLLQKLFPIRQCENNVYRNRSRPCLQYQIGRCLGPCVAGYVSDDEYQQ 190 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYN 240 V + FLSG + + E++ M A+ + +E A RD++ A+ + + Sbjct: 191 QVDYVRLFLSGKDQQVLERLVDRMENASRELKFEEAARIRDQIQAVRRVTEKQFVSGHGD 250 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD---- 296 +D + + +AC+ F GQ G+ ++F K + +++ F+ QFY Sbjct: 251 DLDVIGVAFDAGMACLHVLFIRQGQVLGSRSYFPKVPGGTALGEVVQTFVGQFYLQGSGA 310 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 + P ++LL + LL S G K+ I +G++ + ++ A NAH + KL Sbjct: 311 RTLPSDVLLDFSLPDLQLLAESLSTIAGRKISIQCKPRGDRARYLKLARTNAHTALVTKL 370 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 S + + Q L + ++ L KR+E +D SH MG V VV NG ++++YR++N Sbjct: 371 SQQSTVQQRLAELSRILGL-GDIKRMECFDISHTMGEQTVASCVVFDSNGPLRSEYRRYN 429 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + DD A M VL+RR+ + + + + PDVV++DGGKGQL Sbjct: 430 ITD--ITPGDDYAAMTQVLKRRYGKSLDDSK---------------IPDVVVIDGGKGQL 472 Query: 477 SAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532 + A+ V + L V + + ++ +AKG R AG+E F+ GE + L P L+ IQ Sbjct: 473 AQAKAVFESLQVPWDKTKPLLLGVAKGSDRKAGLETLFLDTTGEGMALPPDSPALHVIQH 532 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RD++H AI+ HRK+R K S L+ I GIGP R+++LL+ G ++ + +S + +A+ Sbjct: 533 IRDDSHDHAISGHRKKRAKVKSTSALETIEGIGPKRRQMLLKYMGGLQPLMSASIDEIAN 592 Query: 592 IEGISKKIACKIYNHFH 608 + GIS +A KI++ Sbjct: 593 VPGISHALAEKIFHALK 609 >gi|227112459|ref|ZP_03826115.1| excinuclease ABC subunit C [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 610 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 210/618 (33%), Positives = 330/618 (53%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D V+YVGKA +L+KR+ SY S+ + + ++ I +I T+ Sbjct: 11 LKTVTSQPGVYRMYDAGNTVIYVGKAKDLKKRLASYFRSHVASRKTEALVKSIKHIDVTI 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPMIFLS-GDAHPRLAVHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + +AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E Y Sbjct: 130 GPFPNGNAVRETLILLQKLFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVSGLVSEEDYQ 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + V + FLSG + + ++ M A+ +E A RD++ A+ + + Sbjct: 190 QQVDYVRLFLSGKDQQVLNQLISRMEAASRDLHFEDAARIRDQIQAVRRVTEKQFVSGDG 249 Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 +D S+ + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 250 EDLDVISVAFDAGMACVYVLFIRQGKVLGSRSYFPKVPGGTELGEVVQTFVGQFYLQGSL 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + LL S G KV+I +G++ + ++ A NA + K Sbjct: 310 GRTLPTEILLDFTLPDKDLLTESLTAVAGRKVQIQTKPRGDRARYLKLARTNAATALVTK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP R+E +D SH MG V VV NG ++++YR++ Sbjct: 370 LSQQSTIHQRLAALANVLQLP-EIHRMECFDISHTMGEQTVASCVVFDANGPLRSEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + + DD A M VL RR+ + + + + PDV+++DGGKGQ Sbjct: 429 NI--SGITPGDDYAAMAQVLRRRYGKALDDSK---------------IPDVIVIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQ 531 L AQ V L V +N+ ++ +AKG R AG+E F + GE + L P L+ IQ Sbjct: 472 LGQAQDVFDSLQVSWDKNKPLLLGVAKGSDRKAGLETLFFESTGEGMALPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RD++H AI HRK+R K S L+ I G+GP R++ LL+ G ++ + +S E +A Sbjct: 532 HIRDDSHDHAIGGHRKKRAKVRNTSTLELIEGVGPKRRQTLLKYMGGLQPLMNASIEEIA 591 Query: 591 SIEGISKKIACKIYNHFH 608 ++ GIS +A KI++ Sbjct: 592 NVPGISHALAEKIFHALK 609 >gi|145639654|ref|ZP_01795257.1| excinuclease ABC subunit C [Haemophilus influenzae PittII] gi|145271211|gb|EDK11125.1| excinuclease ABC subunit C [Haemophilus influenzae PittII] gi|309750624|gb|ADO80608.1| Excinuclease ABC subunit C [Haemophilus influenzae R2866] Length = 609 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 211/616 (34%), Positives = 338/616 (54%), Gaps = 32/616 (5%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 PGVY+M D +V+YVGKA +L+KR+ SY N + + +++ I++I T+T +E Sbjct: 13 HEPGVYRMYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVASIHHIDTTLTSSET 72 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EALLLE N IK +PR+N+LLRDDKS+P+IL+T K + P + +R S G YFGP+ Sbjct: 73 EALLLEHNFIKLYQPRYNVLLRDDKSYPFILLT-KERHPRITSYRGSKKFTGEYFGPYPH 131 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHE 186 AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCS PC +S E+Y + V Sbjct: 132 AGAVRETLSLLQKLFPVRQCENSVYSNRSRPCLQYQIGRCSAPCVQGYVSDEEYNQQVEL 191 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMD 243 A+ FL G + + + + M QA+ D+E A +RD++ A+ + + MD Sbjct: 192 ARLFLQGKDQQVLDYLIGKMEQASRNLDFEQAARYRDQIQAVRSVIEKQFVSNERLDDMD 251 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPC 299 S+ + LAC+Q F G+ G ++F K + + +++ F+ QFY + Sbjct: 252 IMSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTETFVGQFYLQGHQGRSI 311 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P +I++ + E S LE +Q G KV I +G+K K ++ A +NA + +L Sbjct: 312 PNSIIVDRQLAEKSELEQLLSEQAGRKVTIQESVKGDKSKYLQLAQVNAKAALNVQLKQS 371 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + LP I R+E +D SH MG V VV + G +K+ YR+FN+ Sbjct: 372 SRMSERYQALCDLLNLPKIK-RMECFDISHTMGNQTVASCVVFNQEGPLKSDYRRFNIEG 430 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A M VL++R+ + ++ ++ PD++ +DGGKGQL+ A Sbjct: 431 --ITGGDDYAAMEQVLQKRYERDLEEDK---------------IPDIIFIDGGKGQLNRA 473 Query: 480 QGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535 V + L V +NR +I +AKG R AG E + K+ + L L+ IQ +RD Sbjct: 474 LNVFQHLQVKWDKNRPHLIGVAKGVDRRAGQEVLIISKQDREIHLPDDSLALHLIQHIRD 533 Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E+H AI+ HRK+R+KA S L+ I G+G R++ LL+ G ++ + +++ + +AS+ G Sbjct: 534 ESHNHAISGHRKKRQKAFTQSGLETIEGVGAKRRQALLKYLGGLQGVKKATLDEIASVPG 593 Query: 595 ISKKIACKIYNHFHKN 610 IS K+A I+ + Sbjct: 594 ISLKLAETIFETLKND 609 >gi|145633382|ref|ZP_01789112.1| excinuclease ABC subunit C [Haemophilus influenzae 3655] gi|144985945|gb|EDJ92547.1| excinuclease ABC subunit C [Haemophilus influenzae 3655] Length = 609 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 210/616 (34%), Positives = 339/616 (55%), Gaps = 32/616 (5%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 PGVY+M D +V+YVGKA +L+KR+ SY N + + +++ I++I T+T +E Sbjct: 13 HEPGVYRMYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVASIHHIDTTLTSSET 72 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EALLLE N IK +PR+N+LLRDDKS+P+IL+T K + P + +R S G YFGP+ Sbjct: 73 EALLLEHNFIKLYQPRYNVLLRDDKSYPFILLT-KERHPRITSYRGSKKFAGEYFGPYPH 131 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHE 186 AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCS PC +S E+Y + V Sbjct: 132 AGAVRETLSLLQKLFPVRQCENSVYSNRSRPCLQYQIGRCSAPCVQGYVSDEEYNQQVEL 191 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMD 243 A+ FL G + + + + M QA+ D+E A +RD++ A+ + + MD Sbjct: 192 ARLFLQGKDQQVLDYLIGKMEQASRNLDFEQAARYRDQIQAVRSVIEKQFVSNERLDDMD 251 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPC 299 S+ + LAC+Q F G+ G ++F K + + +++ F+ QFY + Sbjct: 252 IMSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTETFVGQFYLQGHQGRSI 311 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P +I++ + E S LE +Q G KV I +G+K K ++ A +NA + +L Sbjct: 312 PNSIIVDRQLAEKSELEQLLSEQAGRKVTIQESVKGDKSKYLQLAQVNAKAALNVQLKQS 371 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + LP I R+E +D SH MG V VV + G +K+ YR+FN+ Sbjct: 372 SRMSERYQALCDLLNLPEIK-RMECFDISHTMGNQTVASCVVFNQEGPLKSDYRRFNIEG 430 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A M L++R+ + ++ ++ PD++ +DGGKGQL+ A Sbjct: 431 --ITGGDDYAAMEQALQKRYERDLEEDK---------------IPDIIFIDGGKGQLNRA 473 Query: 480 QGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535 V + L V +NR +I +AKG R AG+E + K+ + L L+ IQ +RD Sbjct: 474 LNVFQHLQVKWDKNRPHLIGVAKGVDRRAGLEVLIISKQDREIHLPDDSLALHLIQHIRD 533 Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E+H AI+ HRK+R+KA S L+ I G+G R++ LL+ G ++ + +++ + +AS+ G Sbjct: 534 ESHNHAISGHRKKRQKAFTQSGLETIEGVGTKRRQALLKYLGGLQGVKKATLDEIASVPG 593 Query: 595 ISKKIACKIYNHFHKN 610 IS K+A +I+ + Sbjct: 594 ISPKLAERIFETLKND 609 >gi|167036996|ref|YP_001664574.1| excinuclease ABC subunit C [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115414|ref|YP_004185573.1| excinuclease ABC subunit C [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|229557871|sp|B0K791|UVRC_THEP3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|166855830|gb|ABY94238.1| excinuclease ABC, C subunit [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928505|gb|ADV79190.1| excinuclease ABC, C subunit [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 615 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 199/618 (32%), Positives = 334/618 (54%), Gaps = 18/618 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRF 60 + +PE PGVY M D +G+++YVGKA L+ R++ Y + ++ M+S + + + Sbjct: 6 KLKLLPEKPGVYIMKDKSGKIIYVGKAVVLKNRVRQYFQNKEKQLPKVKVMLSHVEDFEY 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT TE+EAL+LE N+IK+ KP++N+LL+DDK++PYI +T + P + R Sbjct: 66 IVTDTELEALMLECNLIKKYKPKYNVLLKDDKNYPYIKVTVNEEYPRIMFTRRIEPDGAK 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP++S AV +TI +++ F +R+C ++ + + R CL + I CS PCT +I+ E Sbjct: 126 YFGPYSSAFAVRETIKLVRKMFPIRTCNKNIEKDMGKVRECLYYHIGLCSAPCTNKINKE 185 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y++ V +A FL G L +K+ +M +A + +E A RD++ A+ + Sbjct: 186 DYIKLVDQAVLFLDGKRDWLIQKLKEDMKKAAEELRFEEAARIRDQIFAIERTSEKQKVV 245 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D S+ + +++CIQ F G+ G +++K +I+S F++QFY Sbjct: 246 SVGEDEQDIISMARSADISCIQVFFVRDGKLSGREHYYMKNTEGMERGEIISSFIKQFYE 305 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--H 352 P P+ I+ E +E+ LL ++ G KV IT+P +G+K+++++ NA + + Sbjct: 306 GAPYIPKEIITDVELDESELLSEWLSQKRGNKVFITIPVRGKKKELVDMVYQNALEALKN 365 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + EIS ++ + + L + RIE YD S+ G VG MVV + K+QY Sbjct: 366 DISIREEISKAQVVLELSNLVGLDYAK-RIEAYDISNTRGQDNVGSMVVFVDGKPKKSQY 424 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP-KKQEYSFPSWPDVVILDG 471 RKFN+ V+ QDD MR V+ERRF I+ +E + ++ + F PD++ +DG Sbjct: 425 RKFNIK--YVEGQDDYESMREVIERRFLHAIEEKELIEKGELEEDKAKFAEMPDLIFVDG 482 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 G G ++A VL L + I + + K K V + + M I Sbjct: 483 GIGHVNAVLQVLSGLGIS--IPVYGMVKDSKHRTRG---LVSPQGEIDIPMTSKAFRLIA 537 Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 ++++EAHRFAIT H++++ K S L I GIG R + L +F +++ I R+S E L Sbjct: 538 QIQEEAHRFAITFHKEKQSKRFKSELLNIPGIGEKRAKALYDAFKSIEEIKRASVEDLKK 597 Query: 592 IEGISKKIACKIYNHFHK 609 +EG+++K A +Y +F K Sbjct: 598 VEGMNEKAAQAVYEYFRK 615 >gi|126174774|ref|YP_001050923.1| excinuclease ABC subunit C [Shewanella baltica OS155] gi|189038088|sp|A3D5P1|UVRC_SHEB5 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|125997979|gb|ABN62054.1| Excinuclease ABC subunit C [Shewanella baltica OS155] Length = 609 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 194/611 (31%), Positives = 324/611 (53%), Gaps = 28/611 (4%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 GVY+M D+ V+YVGKA +L+KR+ SY N + ++S I++I T+T +E Sbjct: 16 SSAGVYRMYDVKNDVIYVGKAKDLKKRLTSYFRKNLANVKTQALVSHIHHINVTLTHSET 75 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 +ALLLE + IK+ P++N+LLRDDKS+PYIL++ +H+ P L HR +G YFGP+ + Sbjct: 76 DALLLENDYIKQYMPKYNVLLRDDKSYPYILLS-QHEHPRLAYHRGPQREKGHYFGPYPN 134 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 AV ++++ +Q+ F +R C D ++ R+RPCL +Q+ RCS PC G++S+ Y E V A Sbjct: 135 GGAVRESLHLMQKLFPIRQCDDLYYKSRSRPCLQYQLSRCSAPCVGKVSNADYDEQVKLA 194 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCF 245 FL G + + + M A ++ YE A RD++ AL + + N MD Sbjct: 195 SLFLKGKDQQVISALVDKMELAAERQAYEQAARFRDQIMALRKVAEQQEVSNNKGDMDVI 254 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPE 301 ++++ +AC F G+ G+ +++ +++ ++L F+ QFY + + P+ Sbjct: 255 GVHYSSGIACFHLLFIREGKIFGSRSYYPSVPAQTDMDEVLRSFILQFYLNADIQRTIPK 314 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 +++S EE LE + + K I + ++ + A+ NA + +LS + + Sbjct: 315 EVVISHNFEELHELEAAVSEALDKKFSIKTNVRADRASFLRLAVTNATNAVVTRLSHKNT 374 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 + + L +R+E +D SH MG S V VV G K +YR++N+ Sbjct: 375 VEQRFVLLEEILELSTPIQRMECFDISHTMGESTVASCVVFNREGPHKGEYRRYNIEG-- 432 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 + DD A M+ + RRF ++ + PD++ +DGG GQL AQ Sbjct: 433 ITPGDDYAAMKQAVSRRFDKIEAGGK---------------IPDILFIDGGLGQLRIAQK 477 Query: 482 VLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAH 538 ++ + ++++ +I +AKG R G+E + E + L P L+ IQ +RDE+H Sbjct: 478 IVDEKFVHLDKAPQLIGVAKGEGRKPGLETLILGDTETSFSLEGDSPALHLIQHIRDESH 537 Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAI HR RR+K S L+ I GIGP R++ LLQ G ++ + +S L + GIS Sbjct: 538 RFAIAGHRNRRQKTRNTSTLESIPGIGPKRRKALLQHLGGLQEVKGASVAELVKVPGISI 597 Query: 598 KIACKIYNHFH 608 ++A I++ Sbjct: 598 EMAQTIHDALR 608 >gi|258622634|ref|ZP_05717655.1| excinuclease ABC subunit C [Vibrio mimicus VM573] gi|258585090|gb|EEW09818.1| excinuclease ABC subunit C [Vibrio mimicus VM573] Length = 610 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 207/619 (33%), Positives = 325/619 (52%), Gaps = 31/619 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M + V+YVGKA +L+KR+ SY N + + ++S I I TV Sbjct: 11 LKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EAL+LE N IK+ P++N+LLRDDKS+PYI ++ HK P L HR + +G YF Sbjct: 71 THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKKRRGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GP+ AV +T++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC IS + Y Sbjct: 130 GPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLIYQIGRCAGPCVKGLISDDGYQ 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 E V+ + FL G ++ + + M A+ + +E A RD++ A+ +Q + Sbjct: 190 EIVNYLRLFLQGKDNQVLSILVEKMELASRELRFEDAAKARDQIQAIRRVQEQQFVSDDS 249 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-- 296 D +ACI G+ G+ + F K +E++ ++ FL Q+Y Sbjct: 250 LEDQDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPAETSQIEVFESFLSQYYLSHS 309 Query: 297 --KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 + P I+L++ EET L+++ + G KV V G + + + A NA + T Sbjct: 310 EARSIPTRIILNQGLTEETEALQMAISELAGRKVTFHVNPTGTRGRYLRLANTNALTAIT 369 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 K++ +++ K ++ + I R+E +D SH MG S + VV + G VK +YR Sbjct: 370 TKINHKMTIGQRFKALQEELGMDAIT-RMECFDISHTMGESTIASCVVFNQEGPVKQEYR 428 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ + DD A M VLERR+S+ + PD++ +DGGK Sbjct: 429 RYNI--TGITGGDDYAAMAQVLERRYSKQLD---------------SSKIPDIIFIDGGK 471 Query: 474 GQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GQL+ A ++ + II IAKG R G+E G+ L P L+ IQ Sbjct: 472 GQLNRAYEIISSCWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HR +R K S L+ I G+GP R++ LL+ G ++ + R+S E +A Sbjct: 532 HIRDESHSHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIA 591 Query: 591 SIEGISKKIACKIYNHFHK 609 + GIS +A IY + Sbjct: 592 KVPGISHALAENIYQALKQ 610 >gi|152997247|ref|YP_001342082.1| excinuclease ABC subunit C [Marinomonas sp. MWYL1] gi|150838171|gb|ABR72147.1| excinuclease ABC, C subunit [Marinomonas sp. MWYL1] Length = 607 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 218/612 (35%), Positives = 338/612 (55%), Gaps = 24/612 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY+M D+ G +LYVGKA NL+ R+ SY T + ++S+I+ I VT Sbjct: 14 NLTTRPGVYRMYDVKGELLYVGKAKNLKNRVASYFRVTGLTTKTMALVSRIHTIEIAVTK 73 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE +IK+ +P +NILLRDDKS+PYIL+++ H PAL R +G+ FGP Sbjct: 74 SETEALLLEQTLIKQHRPPYNILLRDDKSYPYILLSN-HPHPALLFRRGDKADKGTLFGP 132 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV++++N++Q+ F +R C DS + +R+RPCL +QIKRCSGPC IS E+Y V Sbjct: 133 FPSGSAVKESLNTMQKVFKVRQCEDSTYSNRSRPCLQYQIKRCSGPCVNLISDEEYELDV 192 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRM 242 A+ FL G + L +I M+ A ++E A RD++ L HIQ Sbjct: 193 RHARMFLQGKDQELTAEITTQMSAAAADMEFERAAELRDQIIQLKHIQEQQHVYGQTGEA 252 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300 D + C+ G+ G+ +++ K E T ++LS F+ QFY + P Sbjct: 253 DVIASIIQPGGLCVHVMMVRKGKVVGSKSYYPKMPIEITEGELLSSFIAQFYLGGIQELP 312 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +++S E E+ L F+ K+++ +G++ + +E A +NA + +LS + Sbjct: 313 KTLIISHELEDGDALVEGIFETTQKKIEVLSNVRGQRARWLELAKLNAEQGLQARLSDKR 372 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 +H + K P +E +D SH G + V VV G +G K +YR FN+ Sbjct: 373 NHFSRITALQKLLGFSEPPMHMECFDISHSSGEATVASCVVFGPDGPDKKRYRSFNIEG- 431 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 V+ DD M+ L RR+ ++ E PDV+++DGGKGQL+ A+ Sbjct: 432 -VEPGDDYGAMKQALTRRYKRVKSGE--------------LEAPDVLLIDGGKGQLTQAE 476 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHR 539 VLK+L + I ++ +AKG R G+E ++ E +VL L+ IQ +RDEAHR Sbjct: 477 TVLKELGL-VNIFLLGVAKGDTRKPGLETLYIGSKEDEVVLPPDSAALHLIQHIRDEAHR 535 Query: 540 FAI-TTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FA+ + R+R KK +S L++I GIGP R++ LL +FG + + +S E ++ ++GIS K Sbjct: 536 FAVKSHRRRRDKKRRHSVLEDIPGIGPNRRKELLTAFGGYQELLSASQEDISKVKGISAK 595 Query: 599 IACKIYNHFHKN 610 A +IY + HK+ Sbjct: 596 KAEEIYLYLHKS 607 >gi|322513961|ref|ZP_08067036.1| excinuclease ABC subunit C [Actinobacillus ureae ATCC 25976] gi|322120187|gb|EFX92145.1| excinuclease ABC subunit C [Actinobacillus ureae ATCC 25976] Length = 610 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 201/620 (32%), Positives = 327/620 (52%), Gaps = 33/620 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+M D ++YVGKA +L+KR+ SY S + + +++ I++I T+T Sbjct: 10 DVPHLPGVYRMYDAKNTIIYVGKAKDLKKRLSSYFRSQLASKKTEALVANIHHIETTITH 69 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N IK +P++N+LLRDDKS+PYIL+T KH+ P + R S I G YFGP Sbjct: 70 SETEALLLEHNYIKENQPKYNVLLRDDKSYPYILLT-KHQHPRITSFRGSKKIAGEYFGP 128 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183 + + AV +T+N LQ+ F +R C DS +++R+RPCL +QI RC PC S +Y Sbjct: 129 YPNAGAVRETLNLLQKLFPIRQCEDSYYKNRSRPCLQYQIGRCLAPCVEGYYSQAEYDNQ 188 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240 V+ + FL G + + E + + M A D+E A RD++ ++ +Q + Sbjct: 189 VNLVRLFLQGKDGQVVEHLVQKMESAAEDLDFEGAARFRDQIQSVRAVQEKQFVSNERLD 248 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296 +D S+ + +AC+ F G+ G ++F K + + ++ F+ QFY Sbjct: 249 DLDIISIAYQHGIACVHILFVRHGKVLGNRSYFPKVPNNTDLTELADTFVGQFYLQMNQH 308 Query: 297 KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P I++ + E T+L + + +G+K + + A NA + T + Sbjct: 309 RTIPNQIIIDQPLSEATTLANVLSEQARHKVSIADKNIRGDKSRYLALAKTNAEAALTLQ 368 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L + + L I R+E +D SH MG V VV E+G +K+ YR+F Sbjct: 369 LKQDTHIRQRYDSLKALLNLAEIK-RMECFDISHTMGNQTVASCVVFDEHGPLKSDYRRF 427 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M L +R+ + ++ E+ PD++ +DGGKGQ Sbjct: 428 NIEG--ITGGDDYAAMEQTLLKRYDRNLEEEK---------------IPDIIFIDGGKGQ 470 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQ 531 L+ A LNV + + +I +AKG +R AG+E + K + + L P L+ IQ Sbjct: 471 LNRALETFASLNVSWDKRKPLLIGVAKGVERKAGLETLLISKWDKEIHLPPDSPALHLIQ 530 Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AIT HRK+R+KA S L+ I G+G R++ LL+ G ++ + ++ E + Sbjct: 531 HIRDESHNHAITGHRKKRQKAFTESGLESIAGVGAKRRQALLKYLGGMQGVKSATLEEIQ 590 Query: 591 SIEGISKKIACKIYNHFHKN 610 S+ ISK++A I++ + Sbjct: 591 SVPSISKQLAEVIFDTLQNS 610 >gi|312142879|ref|YP_003994325.1| excinuclease ABC, C subunit [Halanaerobium sp. 'sapolanicus'] gi|311903530|gb|ADQ13971.1| excinuclease ABC, C subunit [Halanaerobium sp. 'sapolanicus'] Length = 616 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 212/621 (34%), Positives = 335/621 (53%), Gaps = 34/621 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 +++P PGVY M D G ++YVGKA +L+ R++SY NN +++ ++ I + + Sbjct: 14 QIKELPAQPGVYMMKDETGMIIYVGKAKSLRSRVRSYFRKNNQSYKTQLLVRYIYDFDYI 73 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 +T TEVEA +LEAN+IK+ +P+FNI L+DDK++P+I +T P ++K R Y Sbjct: 74 ITDTEVEAYILEANLIKKHQPKFNIRLKDDKTYPFIKVTKNLDFPRVFKTRLVKNDGAEY 133 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVF--RHRTRPCLLFQIKRCSGPCTGEISSEK 179 FGPFA VDA+ KT++ ++ F LRSC + +PCL + I +C GPC G +S E Sbjct: 134 FGPFADVDAIYKTLDVIKDIFQLRSCKKEIIAGEPEAKPCLNYHINKCLGPCIGAVSKED 193 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y E + + FLSG LK ++ + M A + +YE A RD L A + + + Sbjct: 194 YHELIDQVMLFLSGRQEELKAEVEKMMENAAQERNYEKAARFRDALKAFAKLSESQKVMS 253 Query: 240 NRM-DCFSLYHNKNL---ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 ++ D + + AC Q G+ G F L+ E A+++ FL+Q+Y Sbjct: 254 DKNIDQDVVALVEGENDLACSQLLLVRNGRLIGQEYFILEGTEEENKAEMMGSFLQQYYE 313 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351 P+ +LL+ + L+E G KVKI P++G+K+K++E A NA ++ Sbjct: 314 QAAGIPDELLLNTDLAYRKLIEERLAVLKGKKVKILQPQKGDKKKMLEMAERNAAQNLKK 373 Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + + +K + + P IE +D S+I G V MVV K Sbjct: 374 EDIRSKYEKQRTSGAVKKLAEILEIEKEPHHIEGFDISNIQGTDTVASMVVFKNGRPSKK 433 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YR+F N V+ DD + M+ V+ERR+++L++ ++ L PD++++D Sbjct: 434 DYRRF--KINTVEGPDDFSSMKEVVERRYARLLREDKKL--------------PDLILID 477 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQLSAA VL+ L +++ + II +AK + E F + EA+++ P L + Sbjct: 478 GGKGQLSAAYEVLELLGIDD-LAIIGLAKKEE-----EIFKPGQSEAIIIPHHSPALQLL 531 Query: 531 QRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 QR+RDEAHRFA++ HRK R + +S LDEI G+G R+ LLQ FG++ I + L Sbjct: 532 QRVRDEAHRFAVSYHRKLRSRRLTHSMLDEIPGVGETRRNALLQHFGSLAKIREAKIWQL 591 Query: 590 ASIEGISKKIACKIYNHFHKN 610 +EGIS K A KI+++ +N Sbjct: 592 KEVEGISSKTARKIFDYLREN 612 >gi|256750641|ref|ZP_05491527.1| excinuclease ABC, C subunit [Thermoanaerobacter ethanolicus CCSD1] gi|256750481|gb|EEU63499.1| excinuclease ABC, C subunit [Thermoanaerobacter ethanolicus CCSD1] Length = 615 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 199/618 (32%), Positives = 331/618 (53%), Gaps = 18/618 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRF 60 + +PE PGVY M D +G+++YVGKA L+ R++ Y + ++ M+S + + + Sbjct: 6 KLKLLPEKPGVYIMKDKSGKIIYVGKAVVLKNRVRQYFQNKEKQLPKVKVMLSHVEDFEY 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT TE+EAL+LE N+IK+ KP++N+LL+DDK++PYI +T + P + R Sbjct: 66 IVTDTELEALMLECNLIKKYKPKYNVLLKDDKNYPYIKVTVNEEYPRIMFTRRIEPDGAK 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP++S AV +TI +++ F +R+C ++ + + R CL + I CS PCT +I+ E Sbjct: 126 YFGPYSSAFAVRETIKLVRKMFPIRTCNRNIEKDMGKVRECLYYHIGLCSAPCTNKINKE 185 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y + V +A FL G L +K+ +M +A + +E A RD++ A+ + Sbjct: 186 DYRKLVDQAVLFLDGKRDWLIQKLKEDMKKAAEELRFEEAARIRDQIFAIERTSEKQKVV 245 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D S+ + +++CIQ F G+ G +++K +I+S F++QFY Sbjct: 246 SVGEDEQDIISMARSADISCIQVFFVRDGKLSGREHYYMKNTEGMERGEIISSFIKQFYE 305 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--H 352 P P+ I+ E +E LL ++ G KV IT+P +G+K+++++ NA + + Sbjct: 306 GAPYIPKEIITDVELDERELLSEWLSQKRGNKVFITIPVRGKKKELVDMVYQNALEALKN 365 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + EIS + + + L + RIE YD S+ G VG MVV + K+QY Sbjct: 366 DISIREEISKDQAVLELSNLVGLDYAK-RIEAYDISNTRGQDNVGSMVVFVDGKPKKSQY 424 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP-KKQEYSFPSWPDVVILDG 471 RKFN+ V+ QDD MR V+ERRF I+ +E + ++ + F PD++ +DG Sbjct: 425 RKFNIK--YVEGQDDYESMREVIERRFLHAIEEKELIEKGELEEDKAKFAEMPDLIFVDG 482 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 G G ++A VL L + I + + K K V + + M I Sbjct: 483 GIGHVNAVLQVLSGLGIS--IPVYGMVKDSKHRTRG---LVSPQGEIDIPMTSKAFRLIA 537 Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 ++++EAHRFAIT H++++ K S L I GIG R + L +F +++ I R+S E L Sbjct: 538 QIQEEAHRFAITFHKEKQSKRFKSELLNIPGIGEKRAKALYDAFKSIEEIKRASVEDLKK 597 Query: 592 IEGISKKIACKIYNHFHK 609 +EG+++K A +Y +F K Sbjct: 598 VEGMNEKAAQAVYEYFRK 615 >gi|225028028|ref|ZP_03717220.1| hypothetical protein EUBHAL_02297 [Eubacterium hallii DSM 3353] gi|224954628|gb|EEG35837.1| hypothetical protein EUBHAL_02297 [Eubacterium hallii DSM 3353] Length = 629 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 194/624 (31%), Positives = 316/624 (50%), Gaps = 21/624 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M + ++YVGKA L+ R++ Y S+ N + +I HM+S I + Sbjct: 7 ELKKLPAKPGVYLMHNAQDEIIYVGKARILKNRVRQYFQSSYNKSVKIQHMVSHIAYFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE N+IK +P +N +L+DDKS+PYI +T + P + R + Sbjct: 67 IITDSELEALVLECNLIKEHRPHYNTMLKDDKSYPYIRVTVQEDYPRILFCRQVKRDKSK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV+ TI +++ + +RSC+ S+ + + RPCL +QI +C PC IS E Sbjct: 127 YFGPYTSAGAVKDTIELMRKVYKIRSCSRSLPKEIGKDRPCLYYQINQCDAPCQNYISKE 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y V +A KFL+G + + M +A + ++E A +RD + + I Sbjct: 187 EYRAHVDKALKFLNGDEKEIINSLEEKMKKAAAELEFEQAAEYRDLIENVKRIGEKQKIN 246 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D ++ + A + F G+ G F + +S +I++ F++QFY Sbjct: 247 DTGGDDRDIIAMAKAGDEAVVAIFFIRSGKLLGRDHFHMTGIGDSEKQEIITDFIKQFYV 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350 P P+ IL EE + +LE + G KV +PK+G K +++E A NA + Sbjct: 307 GTPFIPKEILTQEEVLDQEILEKWLSDKRGSKVIFAMPKRGSKHQMMELARKNAQNVLAQ 366 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E + + + + R+E +D S+ G V MVV + ++ Sbjct: 367 DSEKLKREERRTIGAVHELEQALGI-GNLNRMEAFDISNTNGYENVASMVVFEKGKAKRS 425 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQ-LIKNEENLNFHPKKQEYSFPSWPDVVIL 469 YRKF + V DD M LERRFS + + +E + SF +PD++++ Sbjct: 426 DYRKFKIKT--VAGPDDYHCMEEALERRFSHGIREQKEREEKGQDMELGSFTRFPDILMM 483 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ++ A VL+KL + I + + K E + Sbjct: 484 DGGKGQVNIALQVLEKLGLT--IPVCGMVKDDFHRTRA---LYYNNEIIEFPKNSEAFRM 538 Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 I RL+DEAHRFAIT H+ R K +S LD+I GIGP R++ L++ F + + +S Sbjct: 539 ITRLQDEAHRFAITYHKALRGKEQVHSVLDDIKGIGPARRKSLMKHFKDIGKVKEASVTE 598 Query: 589 LASIEGISKKIACKIYNHFHKNTS 612 L +GI++ +A +IY FH++TS Sbjct: 599 LCEADGITENVAEEIYRFFHEDTS 622 >gi|331090512|ref|ZP_08339365.1| UvrABC system protein C [Lachnospiraceae bacterium 2_1_46FAA] gi|330405855|gb|EGG85383.1| UvrABC system protein C [Lachnospiraceae bacterium 2_1_46FAA] Length = 613 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 201/620 (32%), Positives = 341/620 (55%), Gaps = 25/620 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M D ++YVGKA +L+ R++ Y S+ N +I M++ I+ + Sbjct: 7 ELKKLPGRPGVYLMHDEKDDIIYVGKAISLKNRVRQYFQSSRNKGAKIEQMVTHISRFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK +P++N +L DDK++P+I +T + P + R+ + Sbjct: 67 IVTDSELEALVLECNLIKEHRPKYNTMLMDDKTYPFIKVTVEEDYPRVLFAREIKKDKAK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV+ TI+ +++ + +RSC ++ + + RPCL + IK+C PC G IS E Sbjct: 127 YFGPYTSAGAVKDTIDLIRKLYHIRSCNRNLPKDIGKERPCLNYHIKQCYAPCQGYISKE 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + V +A +FL G + + + M +A+ + D+E AI +R+ L ++ I Sbjct: 187 EYRKSVQQALRFLGGEYDKILKTLEEKMEKASEELDFEKAIEYRELLNSVKQIAQKQKIT 246 Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D ++ +N A +Q F G+ G F++K + +IL F++QFY Sbjct: 247 NSDGEDKDILAVATEENDAVVQVFFIRGGRLIGRDHFYMKINEGEQKNEILENFIKQFYA 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351 P P +++ EE +E+ LLE ++ G+KV ITV ++G+K+K+++ A NA Sbjct: 307 GTPYIPRELMVQEELKESRLLEEWLTQKRGHKVYITVHQKGQKKKLVDLAEKNAKLVLST 366 Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E +K+ K L ++ R+E +D S+ G ++VG M+V + +N Sbjct: 367 DKERLKREEGRTIGAVKEIEKLLGLSNLV-RMEAFDISNTNGFNSVGSMIVYEKGKPKRN 425 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YRKF + V+ DD A M VL RRF IK +E K+ SF S+PD++++D Sbjct: 426 DYRKFKIKG--VQGADDYASMEEVLTRRFEHGIKEKEE-----GKELGSFTSFPDLIMMD 478 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ++ A VL++L++ I + + K + ++ I Sbjct: 479 GGKGQVNVALQVLERLHL--NIAVCGMVKDDNHRTRG---LYYNNVEIPIDRNSEAFRLI 533 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DEAHRFAI HRK R + +S LD+I GIGP R++ L++ F ++ I ++ E L Sbjct: 534 TRIQDEAHRFAIEFHRKLRGQGQVHSILDDIKGIGPARRKDLMKHFMSLDAIKEATVEEL 593 Query: 590 ASIEGISKKIACKIYNHFHK 609 ++ +++K A ++YN FHK Sbjct: 594 KNLPSMNEKSAQEVYNFFHK 613 >gi|298675948|ref|YP_003727698.1| excinuclease ABC subunit C [Methanohalobium evestigatum Z-7303] gi|298288936|gb|ADI74902.1| excinuclease ABC, C subunit [Methanohalobium evestigatum Z-7303] Length = 603 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 214/620 (34%), Positives = 347/620 (55%), Gaps = 33/620 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRF 60 + P+ PGVY M D + V+Y+GKA +L+KR+ Y S H+ + ++ I +I + Sbjct: 6 DISKFPDLPGVYLMKDNSDTVIYIGKARSLKKRVSQYFQSQKYHSPKTRTLVKHIADIEY 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +EVEAL+ EA++IK+ KPR+N+ L+DDK +PYI IT+ K P +Y R Sbjct: 66 IVTQSEVEALITEASLIKKHKPRYNVRLKDDKRYPYIKITNS-KYPRIYLTRRRLMDNAL 124 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT--RPCLLFQIKRCSGPCTGEISSE 178 YFGP+ + A KT++ + R F +R C + +T RPCL + IKRC GPCTG +S Sbjct: 125 YFGPYTNAGAARKTLDIISRIFKVRKCKTKIDDDKTHSRPCLNYHIKRCLGPCTGAVSET 184 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--D 236 Y E ++ A +FL G + L +++ M Q +L ++YE+A + RD++ AL ++ Sbjct: 185 VYQEELNSAIRFLKGESDELVKELEDKMYQLSLNQEYEAASVVRDQIEALKNLTQQQVAI 244 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSES-TNAQILSYFLRQFYT 295 S + D S ++N IQ + G G F + + + ++LS F++Q+Y Sbjct: 245 SGTDERDVISTAVDENAVYIQLFYIRNGNLVGRSQFTMDRGDDEVSIPEVLSGFIKQYYQ 304 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 D P P IL+ + E L++ +++ G V I VP +G+K++I++ A NA S Q+ Sbjct: 305 DSPVPPEILVQYDIPEKDLIKKWLYEKSGLHVDIHVPLKGDKKRILDLAAKNAEMSMKQE 364 Query: 356 LSTEISHQ--MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + +L++ +L +P IE +D S+I G AVG +VV ++YR Sbjct: 365 QLKKDHQHPNEVLENLKTDLSLETLPYHIEGFDISNISGTDAVGSLVVFENGVPANSKYR 424 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 +FN+ +V+ DD AMM V+ RRFS+++ + L PD++++DGG Sbjct: 425 QFNIK--NVEGIDDFAMMAEVVHRRFSRILDENKPL--------------PDLILIDGGP 468 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 GQ+SAA+G L LN++N I +I +AK + + + ++L+ + + + R+ Sbjct: 469 GQVSAAKGSLDNLNLDN-IPLIGLAKQYEH------IITPENKVIILSQKSDSMKLLMRI 521 Query: 534 RDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDEAHRFA+++HR++R K +S LD I GIG +KR LL+ FGTV I +S + L + Sbjct: 522 RDEAHRFAVSSHRRKRTAKLTHSALDGIPGIGESKKRALLEHFGTVDNIINASIKDLKQV 581 Query: 593 EGISKKIACKIYNHFHKNTS 612 EGIS +A KI ++F + + Sbjct: 582 EGISNNLAQKIVDYFENDDN 601 >gi|313802189|gb|EFS43421.1| excinuclease ABC subunit C [Propionibacterium acnes HL110PA2] Length = 672 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 190/646 (29%), Positives = 317/646 (49%), Gaps = 45/646 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D G+V+YVGKA NL+ R+ SY + R M++ ++++TV Sbjct: 13 TIPTQPGVYRFSDAHGQVIYVGKAKNLRNRLNSYFQDISALHPRTQRMVTTAAHVQWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 EVE+L LE IK PRFN++ RDDKS+P++ T + P ++ R + Y+G Sbjct: 73 QNEVESLQLEYIWIKEFDPRFNVMYRDDKSYPWLCFTWTDEYPRVFVGRGAHHKGWRYYG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180 PF A+ T+ +L R F +RSC+ VF +++ RPCLL I +CS PC I+S+ + Sbjct: 133 PFGQAWAIRDTVETLLRVFPMRSCSTGVFNRAKNQGRPCLLGYIGKCSAPCVERITSQAH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E E F++G + +++ M +A+ ++E A + RD L ALS N + Sbjct: 193 REIADEFCDFMAGRTTKIVKRLESQMAEASENLEFERAAVIRDSLGALSKTLERNAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294 D S+ + ++ G+ RG + ++ A+++ FL Q Y Sbjct: 253 DGTDADVISMALDPLEVGVKIFHVRGGRIRGERGWVADRADDADEAELMETFLTQLYGVN 312 Query: 295 ----------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344 P +++S E ++ + G V+I VP++G+K +++ Sbjct: 313 ASDGQVRDDGHGNAVPPLVIVSAEPTNPDVMSTILSSERGSHVEIRVPRRGDKATLMDTV 372 Query: 345 LINAHRSHTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMV 400 NA + Q S L++ + L P RIE YD SHI G + VG MV Sbjct: 373 TRNAQETLAQHKLKRASDLATRTRALEEIQESLGLDRAPLRIESYDISHIQGTNVVGSMV 432 Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE------------- 447 V + K++YR+F++ + DD A M VL RR +LI++ + Sbjct: 433 VFEDGMPRKSEYRRFSIKG--FEGSDDFAAMHEVLSRRLRRLIEDRDAMAAAQTPDGDVG 490 Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507 +L F P ++++DGG Q+ AAQ VL++ +E+ I + +AK + Sbjct: 491 SLIDPTTGSPRKFAYAPHLIVVDGGAPQVHAAQQVLEEFGLEDEIALCGLAKRLE----- 545 Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPL 566 E + + ++L LY +QRLRDEAHRFAIT HR +R KA S LD ++G+G Sbjct: 546 EVWLPDEEWPVILPRTSEGLYLLQRLRDEAHRFAITFHRSKRSKAMVESVLDGVSGLGET 605 Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 R++ L+ FG+V+ + +++ + + + G K+A ++ ++ Sbjct: 606 RRKALVSHFGSVRSLRKATVDDIVEVPGFGPKLAGEVVAALSQDKP 651 >gi|297161432|gb|ADI11144.1| excinuclease ABC subunit C [Streptomyces bingchenggensis BCW-1] Length = 681 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 178/634 (28%), Positives = 305/634 (48%), Gaps = 45/634 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 Q+PE PGVY+ D GRV+YVGKA +L+ R+ SY N R M++ ++ + Sbjct: 12 KPGQIPESPGVYKFRDEHGRVIYVGKAKSLRPRLSSYFQDLANLHPRTRTMVTTAASVEW 71 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TEVEAL LE + IK PRFN+ RDDKS+P + +T + P + R Sbjct: 72 TVVSTEVEALQLEYSWIKEFDPRFNVKYRDDKSYPSLAVTLNEEFPRVQVMRGPKKKGVR 131 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP+ A+ +T++ + R F +R+C+ VF+ RPCLL I +CS PC G +++ Sbjct: 132 YFGPYGHAWAIRETVDLMLRVFPVRTCSAGVFKRSAQIGRPCLLGYIGKCSAPCVGRVTA 191 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E++ E F++G ++ + M +A + +YE A RD + AL N Sbjct: 192 EEHRRLAEEFCDFMAGRTGAYLRRLEQQMQEAAEEMEYEKAARLRDDIGALKRAMEKNAV 251 Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D ++ ++ A +Q G+ RG + A ++ + L+Q Y Sbjct: 252 VLADATDADLIAIAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEAVDTAGLVEHALQQLY 311 Query: 295 TDK---PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 ++ P+ +L+ E + + G +V + +P++G+K+ ++ NA ++ Sbjct: 312 GEEKGDAVPKEVLVPALPELAEPVAQWLSDRRGSRVDLRIPQRGDKKDLMATVARNAQQA 371 Query: 352 HTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 + S L++ + L P RIE +D SH+ G V MVV + Sbjct: 372 LALHKTKRASDLTTRSRALEEIAEALELDSAPLRIECFDISHLQGEDVVASMVVFEDGLA 431 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNF---------------- 451 K++YR+F + QDD M V+ RRF + ++ + + Sbjct: 432 RKSEYRRFQIKS--FAGQDDVRAMHEVVGRRFRRYLQEKTDTGEWGPEPDGETAQDGPLE 489 Query: 452 ------HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSA 505 + F P +V++DGG+ Q++AA+ L +L +++ + + +AK + Sbjct: 490 APAGPIDESGKPKRFAYPPQLVVVDGGRPQVAAAKRALDELGIDD-VAVCGLAKRLE--- 545 Query: 506 GMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIG 564 E + + +VL LY +QR+RDEAHRFAIT R +R K+ LD + G+G Sbjct: 546 --EVWLPDDEDPVVLPRSSEGLYLLQRVRDEAHRFAITYQRGKRAKSMKAGALDTVPGLG 603 Query: 565 PLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 R++ LL+ FG++K + ++ E + + G+ +K Sbjct: 604 ESRRQALLKHFGSLKRLRAATVEQICEVPGVGRK 637 >gi|282854209|ref|ZP_06263546.1| excinuclease ABC, C subunit [Propionibacterium acnes J139] gi|282583662|gb|EFB89042.1| excinuclease ABC, C subunit [Propionibacterium acnes J139] gi|314923193|gb|EFS87024.1| excinuclease ABC subunit C [Propionibacterium acnes HL001PA1] gi|314966962|gb|EFT11061.1| excinuclease ABC subunit C [Propionibacterium acnes HL082PA2] gi|314981302|gb|EFT25396.1| excinuclease ABC subunit C [Propionibacterium acnes HL110PA3] gi|315091722|gb|EFT63698.1| excinuclease ABC subunit C [Propionibacterium acnes HL110PA4] gi|315093119|gb|EFT65095.1| excinuclease ABC subunit C [Propionibacterium acnes HL060PA1] gi|315103233|gb|EFT75209.1| excinuclease ABC subunit C [Propionibacterium acnes HL050PA2] gi|327327783|gb|EGE69559.1| excinuclease ABC subunit C [Propionibacterium acnes HL103PA1] Length = 672 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 190/646 (29%), Positives = 313/646 (48%), Gaps = 45/646 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D G+V+YVGKA NL+ R+ SY + R M++ ++++TV Sbjct: 13 TIPTQPGVYRFSDEHGQVIYVGKAKNLRNRLNSYFQDISALHPRTQRMVTTAAHVQWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 EVE+L LE IK PRFN++ RDDKS+P++ T + P ++ R + Y+G Sbjct: 73 QNEVESLQLEYTWIKEFDPRFNVMYRDDKSYPWLCFTWTDEYPRVFVGRGAHHKGWRYYG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180 PF A+ T+ +L R F +RSC+ VF +++ RPCLL I +CS PC I+ E + Sbjct: 133 PFGQAWAIRDTVETLLRVFPMRSCSTGVFNRAKNQGRPCLLGYIGKCSAPCVERITPEAH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E E F++G + +++ M +A+ ++E A + RD L ALS N + Sbjct: 193 REIADEFCDFMAGRTTKIVKRLESQMAEASENLEFERAAVIRDSLGALSKTLERNAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294 D S+ + ++ G+ RG + ++ A+++ FL Q Y Sbjct: 253 DGTDADVISMALDPLEVGVKIFHVRGGRIRGERGWVADRADDADEAELMETFLTQLYGVN 312 Query: 295 ----------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344 P +L+S E ++ + G V+I VP++G+K +++ Sbjct: 313 ASDGQVRDDGHGNAVPPLVLVSAEPTNLDVMSTILSSERGSHVEIRVPRRGDKATLMDTV 372 Query: 345 LINAHRSHTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMV 400 NA + Q S L++ + L P R+E YD SHI G + VG MV Sbjct: 373 TRNAQETLAQHKLKRASDLATRTRALEEIQESLGLDRAPLRMESYDISHIQGTNVVGSMV 432 Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE------------- 447 V + K++YR+F + + DD M VL RR +LI++ + Sbjct: 433 VFEDGMPRKSEYRRFIIKG--FEGSDDFTAMHEVLSRRLRRLIEDRDAMAAAQTPDGDVG 490 Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507 +L F P ++++DGG Q+ AAQ VL++ +E+ I + +AK + Sbjct: 491 SLIDPTTGAPRKFAYAPHLIVVDGGAPQVHAAQQVLEEFGLEDEIALCGLAKRLE----- 545 Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPL 566 E + + ++L LY +QRLRDEAHRFAIT HR +R KA S LD + G+G Sbjct: 546 EVWLPDEEWPVILPRTSEGLYLLQRLRDEAHRFAITFHRSKRSKAMVESVLDSVPGLGET 605 Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 R++ L+ FG+V+ + ++ + +A + G K+A ++ ++ Sbjct: 606 RRKALVSHFGSVRSLRMATVDDIAEVSGFGPKLAGEVVAALSQDKP 651 >gi|309972809|gb|ADO96010.1| Excinuclease ABC subunit C [Haemophilus influenzae R2846] Length = 609 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 208/616 (33%), Positives = 337/616 (54%), Gaps = 32/616 (5%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 PGVY+M D +V+YVGKA +L+KR+ SY N + + +++ I++I +T +E Sbjct: 13 HEPGVYRMYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVASIHHIDTMLTSSET 72 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EALLLE N IK +PR+N+LLRDDKS+P+IL+T K + P + +R S G YFGP+ Sbjct: 73 EALLLEHNFIKLYQPRYNVLLRDDKSYPFILLT-KERHPRITSYRGSKKFAGEYFGPYPH 131 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHE 186 AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCS PC +S E+Y + V Sbjct: 132 AGAVRETLSLLQKLFPVRQCENSVYSNRSRPCLQYQIGRCSAPCVQGYVSDEEYNQQVEL 191 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMD 243 A+ FL G + + + + M QA+ D+E A +RD++ + + + MD Sbjct: 192 ARLFLQGKDQQVLDYLIGKMEQASRNLDFEQAARYRDQIQVVRSVIERQFVSNERLDDMD 251 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPC 299 S+ + LAC+Q F G+ G ++F K + + +++ F+ QFY + Sbjct: 252 IMSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTETFVGQFYLQGHQGRSI 311 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P +I++ + E S LE +Q G KV I +G+K K ++ A +NA + +L Sbjct: 312 PNSIIVDRQLSEKSELEQLLTEQAGRKVTIQESVKGDKSKYLQLAQVNAKAALNVQLKQS 371 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + + LP I R+E +D SH MG V VV + G +K+ YR+FN+ Sbjct: 372 SRMSERYQALCELLNLPEIK-RMECFDISHTMGNQTVASCVVFNKEGPLKSDYRRFNIEG 430 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A M L++R+ + ++ ++ PD++ +DGGKGQL+ A Sbjct: 431 --ITGGDDYAAMEQALQKRYERDLEEDK---------------IPDIIFIDGGKGQLNRA 473 Query: 480 QGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535 V + L V +NR +I +AKG R AG E + K+ + L L+ IQ +RD Sbjct: 474 LNVFQHLQVKWDKNRPHLIGVAKGVDRRAGQEVLIISKQDREIHLPDDSLALHLIQHIRD 533 Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E+H AI+ HRK+R+KA S L+ I G+G R++ LL+ G ++ + +++ + +AS+ G Sbjct: 534 ESHNHAISGHRKKRQKAFTQSGLETIEGVGAKRRQALLKYLGGLQGVKKATLDEIASVPG 593 Query: 595 ISKKIACKIYNHFHKN 610 IS K+A +I+ + Sbjct: 594 ISPKLAERIFETLKND 609 >gi|145630645|ref|ZP_01786424.1| excinuclease ABC subunit C [Haemophilus influenzae R3021] gi|144983771|gb|EDJ91221.1| excinuclease ABC subunit C [Haemophilus influenzae R3021] Length = 609 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 211/616 (34%), Positives = 338/616 (54%), Gaps = 32/616 (5%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 PGVY+M D +V+YVGKA +L+KR+ SY N + + +++ I++I T+T +E Sbjct: 13 HEPGVYRMYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVASIHHIDTTLTSSET 72 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EALLLE N IK +PR+N+LLRDDKS+P+IL+T K + P + +R S G YFGP+ Sbjct: 73 EALLLEHNFIKLYQPRYNVLLRDDKSYPFILLT-KERHPRITSYRGSKKFAGEYFGPYPH 131 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHE 186 AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCS PC IS E+Y + V Sbjct: 132 AGAVRETLSLLQKLFPVRQCENSVYSNRSRPCLQYQIGRCSAPCVQGYISDEEYNQQVEL 191 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMD 243 A+ FL G + + + + M QA+ D+E A +RD++ A+ + + MD Sbjct: 192 ARLFLQGKDQLVLDYLIGKMEQASRNLDFEQAARYRDQIQAVRSVIEKQFVSNERLDDMD 251 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPC 299 S+ + LAC+Q F G+ G ++F K + + +++ F+ QFY + Sbjct: 252 IMSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTETFVGQFYLQGHQGRSI 311 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P +I++ + E S LE +Q G KV I +G+K K ++ A +NA + +L Sbjct: 312 PNSIIVDRQLAEKSELEQLLSEQAGRKVTIQESVKGDKSKYLQLAQVNAKAALNVQLKQS 371 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + + LP I R+E +D SH MG V VV + G +K+ YR+FN+ Sbjct: 372 SRMSERYQALCELLNLPEIK-RMECFDISHTMGNQTVASCVVFNQEGPLKSDYRRFNIEG 430 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A M L++R+ + ++ ++ PD++ +DGGKGQL+ A Sbjct: 431 --ITGGDDYAAMEQALQKRYERDLEEDK---------------IPDIIFIDGGKGQLNRA 473 Query: 480 QGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535 V + L V +NR +I +AKG R AG E + K+ + L L+ IQ +RD Sbjct: 474 LNVFQHLQVKWNKNRPHLIGVAKGVDRRAGQEVLIISKQDREIHLPDDSLALHLIQHIRD 533 Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E+H AI+ HRK+R+KA S L+ I G+G R++ LL+ G ++ + +++ + +AS+ G Sbjct: 534 ESHNHAISGHRKKRQKAFTQSGLETIEGVGAKRRQALLKYLGGLQGVKKATLDEIASVPG 593 Query: 595 ISKKIACKIYNHFHKN 610 IS K+A I+ + Sbjct: 594 ISLKLAETIFETLKND 609 >gi|256822171|ref|YP_003146134.1| excinuclease ABC subunit C [Kangiella koreensis DSM 16069] gi|256795710|gb|ACV26366.1| excinuclease ABC, C subunit [Kangiella koreensis DSM 16069] Length = 612 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 222/609 (36%), Positives = 340/609 (55%), Gaps = 23/609 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVYQML G LYVGKA NL R+KSY + + +++ I +I TVT Sbjct: 21 HLSHKPGVYQMLGKDGETLYVGKAKNLSNRVKSYFTRQYQSPKTELLVTYIEDIHTTVTE 80 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLE N+IK+ KPRFN+L RDDKS+PY+ ++ P L HR + +G YFGP Sbjct: 81 TETEALLLENNLIKKYKPRFNVLFRDDKSYPYVFLSAG-DFPRLAYHRGAKKEKGDYFGP 139 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++++ +Q+TF +R C DS F +R+RPCL +QIKRC+ PC IS E Y + V Sbjct: 140 FPSSSAVRQSLSLIQKTFQIRQCEDSYFANRSRPCLQYQIKRCTAPCVDYISKEDYAKDV 199 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYNRM 242 K F G + + +++ + M+ A+ + D+E A +RD++ + H+ + + Sbjct: 200 ENVKLFYQGKSEQVIKRLQKKMDVASQELDFELAARYRDQIKQMRHVMQQQVISGTASDL 259 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY-TDKPCPE 301 D + + + CI F G G T+F K S +I+S FL +Y + P+ Sbjct: 260 DVIGVAYASGVCCILLVFIRQGMIVGNKTYFPKVPKHSDLQEIVSTFLGFYYLSGAEIPK 319 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 +++ E+ L+ +F +Q G KV I +G+ ++ A NA S KL+++ + Sbjct: 320 QVVIESLPEDIEALQEAFGEQRGNKVTIRQASRGQVKEWQTFANKNAEHSLRAKLNSKSN 379 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 L D K + H+PK +E +D SH G V VV ENG K YR FN+ + Sbjct: 380 FTQRLLDLQKALQMEHMPKHVECFDISHTQGQQTVASCVVFDENGPKKADYRIFNI--SG 437 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 + DD A M+ L RR+ +L ++ L PD+VI+DGGKGQL+ A+ Sbjct: 438 ITGGDDYAAMQQALTRRYKRLKDEQQAL--------------PDLVIVDGGKGQLAKAEE 483 Query: 482 VLKKLNVENRITIISIAKGPKRSAGME-KFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 V +L +++ +I ++KG R GME +F + + L+L+ ++FIQ +RDEAHRF Sbjct: 484 VFNELELKSS-YLIGVSKGSDRKVGMEQIWFPGQHQPLLLDDDSKAMHFIQHIRDEAHRF 542 Query: 541 AITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AIT HR +RKK+ S L+EI G+G R++ LL+ FG + + ++S + +A G+S + Sbjct: 543 AITKHRHQRKKSATKSLLEEIPGVGAKRRQALLRHFGGWQEVEKASVKDIAGAPGVSMSL 602 Query: 600 ACKIYNHFH 608 A KIY++ H Sbjct: 603 AQKIYDYLH 611 >gi|227495397|ref|ZP_03925713.1| excinuclease ABC subunit C [Actinomyces coleocanis DSM 15436] gi|226830944|gb|EEH63327.1| excinuclease ABC subunit C [Actinomyces coleocanis DSM 15436] Length = 667 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 212/665 (31%), Positives = 323/665 (48%), Gaps = 57/665 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 + +P PGVY+ D GRV+YVGKA NL+ R+ SY N R M+ N+++ Sbjct: 10 KTADIPTQPGVYRFSDAQGRVIYVGKAKNLRNRLTSYFQDPANLHPRTQQMVFTACNVQW 69 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV +EVEAL LE N IK PRFN++++DD+S+PY+ +T +IP + R + + Sbjct: 70 TVVNSEVEALTLEYNWIKEFDPRFNVMMKDDRSYPYLAVTVADEIPRMVVMRGARNKKVR 129 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISS 177 YFGP++ V A+ T + LQ+ F +R+C+D V R + RPCLL I++C PCTG+IS Sbjct: 130 YFGPYSQVWALRDTADQLQKVFKVRTCSDGVLRRAQAQGRPCLLGYIEKCGAPCTGKISL 189 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 ++ E V E +F+SG ++ M A + ++E A RD L AL + N Sbjct: 190 AEHKEKVAELCQFMSGKVGPYLSELRSEMKAAAAELEFEKAAKLRDNLQALEIVLERNAV 249 Query: 238 IYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 ++N D F L ++ + I G+ RG + L + T+AQ+L+ +Q Y Sbjct: 250 VFNDGTDADVFGLASDELESGIYLFHVRGGRIRGVRGWVLHNEYGETDAQLLTTVFQQVY 309 Query: 295 TD-----------------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITV 331 D P IL+ E E +++E ++ G K + V Sbjct: 310 ADAIAANNLEKLDAVSVDDLEHLPTNAIPAEILVPIEPAEKAVVEEWLSQKRGIKATVKV 369 Query: 332 PKQGEKRKIIEQALINAHRSHTQKLSTE----ISHQMILKDFTKKFALPHIPKRIEIYDN 387 P++GEKR ++E NA + S L++ L H P RIE +D Sbjct: 370 PQRGEKRTLLETVQKNAAETLRHHKSKRVNDLTQRGQALEEIATYLDLAHAPLRIECFDI 429 Query: 388 SHIMGCSAVGCMVVVGENGFVKNQYRKFNL-HPNDVKTQDDCAMMRMVLERRFSQLIKNE 446 SH+ G V MVV + K YR F + +D DD A M +L RRF +L+ E Sbjct: 430 SHLQGTDQVASMVVFEDGAPRKKDYRSFIVHKGSDGHPLDDTAAMSQILTRRFKRLVAEE 489 Query: 447 ENLNFHPK--------------KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRI 492 + + F PD+V++DGG Q++AA L ++ ++ I Sbjct: 490 NGAVGADEDGYLLASGPVDPLTGRPRKFSYRPDLVVVDGGLPQVNAAAATLAEMGID--I 547 Query: 493 TIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK- 551 ++ +AK + E + + ++L LY +Q LRDE+HRFAIT HRK+R K Sbjct: 548 PVVGLAKRLE-----EIWIPEDEYPVILPRTSAGLYLLQHLRDESHRFAITAHRKKRSKT 602 Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 S LD+I G+GP +++ LL F VK I ++ L+ + GI + IY HFH Sbjct: 603 MLRSVLDDIPGVGPSKQKALLTHFKAVKHIQTATESELSEVAGIGPALVSTIYRHFHPEP 662 Query: 612 SHTPT 616 T Sbjct: 663 GKLDT 667 >gi|37679418|ref|NP_934027.1| excinuclease ABC subunit C [Vibrio vulnificus YJ016] gi|56749769|sp|Q7MM39|UVRC_VIBVY RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|37198161|dbj|BAC93998.1| nuclease subunit of the excinuclease complex [Vibrio vulnificus YJ016] Length = 610 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 202/619 (32%), Positives = 321/619 (51%), Gaps = 31/619 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M + V+YVGKA +L+KR+ SY + + ++S I I TV Sbjct: 11 LKTVTHQPGVYRMYNAEAVVIYVGKAKDLKKRLSSYFRKKVDSEKTKALVSNIAKIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EAL+LE N IK+ P++N+LLRDDKS+PYI ++ H+ P + HR + +G YF Sbjct: 71 THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLS-AHRHPRVSLHRGAKKRKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYM 181 GP+ AV +T++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC IS Y Sbjct: 130 GPYPDSGAVRETLHLIQKIFPVRQCEDTVYANRTRPCLMYQIGRCAGPCVSSVISDVDYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 E V + FL G ++ + E + + M A+ + +E A RD++ A+ +Q + Sbjct: 190 ELVGYLRLFLQGKDNQVLELLVQKMEIASQQLKFEDAAKFRDQIQAIRRVQEQQYVSEDS 249 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 MD +ACI G+ G+ + F K + ++ FL Q+Y Sbjct: 250 QEDMDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPQNTNAQEVFDSFLTQYYLSHN 309 Query: 299 ----CPENILLSEEAEET-SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 P I+L++E ++++ G KV+ G + + ++ + NA + T Sbjct: 310 EARTIPSRIILNQELAADVEAIQLALSDVAGRKVQFHTSPSGSRGRYLKLSNTNALTAMT 369 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 K++ +++ K A+ I R+E +D SH MG S + VV G VK +YR Sbjct: 370 TKINHKMTINQRFKALRDVLAMDSIA-RMECFDISHTMGESTIASCVVFNSEGPVKQEYR 428 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ + DD A M LERR+++ + E+ PDV+ +DGGK Sbjct: 429 RYNI--TGITGGDDYAAMGQALERRYAKQLDVEK---------------IPDVIFIDGGK 471 Query: 474 GQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GQL+ A ++ + + R +I IAKG R G+E G+ L DP L+ IQ Sbjct: 472 GQLNRAHEIIAQYWGDWPKRPVMIGIAKGVTRKPGLETLITVDGDEFHLPSDDPALHLIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HR +R K S L+ I G+GP R++ LL+ G ++ + R+S E +A Sbjct: 532 HIRDESHNHAIAGHRAKRGKTRKTSALEGIEGVGPKRRQALLKYTGGLQELKRASVEEIA 591 Query: 591 SIEGISKKIACKIYNHFHK 609 + GIS +A IY + Sbjct: 592 KVPGISHSLAEIIYQALKQ 610 >gi|315651796|ref|ZP_07904800.1| excinuclease ABC subunit C [Eubacterium saburreum DSM 3986] gi|315485926|gb|EFU76304.1| excinuclease ABC subunit C [Eubacterium saburreum DSM 3986] Length = 615 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 198/618 (32%), Positives = 313/618 (50%), Gaps = 30/618 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M D ++YVGKA +L+ R++ Y S+ + + +I M+S+I + Sbjct: 8 ELKKLPRQPGVYIMHDKKDDIIYVGKAVSLKNRVRQYFQSSKDKSPKIKQMVSKIERFEY 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK +PR+N +LRDDK++PYI +T K P L R + Sbjct: 68 IVTDSELEALVLENNLIKENRPRYNTMLRDDKTYPYIKLTVKEDYPRLQIVRQIKKDKNK 127 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT--RPCLLFQIKRCSGPCTGEISSE 178 YFGPF+S +AV TIN L + + LR+C ++ + RPCL + I +C PC IS E Sbjct: 128 YFGPFSSGNAVRDTINLLNKVYKLRTCNRNLPKDIGEERPCLDYFIHQCDAPCQNYISKE 187 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y + V E +FLSG + +KI M + + + +E A RD L ++ H+ Sbjct: 188 DYNKNVAEVLRFLSGDFEPIVDKIRAEMERLSAELKFEEAAKQRDLLNSVLHVTQKQKIT 247 Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D ++ + A +Q F G+ G +++ + A IL F++QFY Sbjct: 248 SDDAKDRDIIAMARDDKDAVVQIFFIREGKMVGREHHYVQVAMDEEKADILESFIKQFYA 307 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351 P P I+ + ++ L+ + G KV I VPK+G K K+++ A+ NA Sbjct: 308 GTPFVPSQIISQYDLKDGELICEWLSSKRGSKVNIIVPKKGSKEKLVDLAMKNAEIVLTK 367 Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E +K+ + +LP R+E YD S+I G +VG MVV K+ Sbjct: 368 DREKLQRQEAKSIGAVKEIEELLSLP-DLHRMEAYDISNISGVQSVGSMVVYENGIPKKS 426 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YRKF + V +D A M+ VL RRF + +N F PD++++D Sbjct: 427 DYRKFKIKT--VIGPNDYASMKEVLTRRFEHVTDGNDN----------GFNKLPDIILMD 474 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ++ V+++ + I + + K E + ++ I Sbjct: 475 GGKGQVNICLQVIEEFGLH--IPVCGMVKDDNHRTRG---LYYNNEEIPIDTHSQGFLLI 529 Query: 531 QRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DEAHRFAI HR R K S LD+I+GIG +R+R L++ F ++ I ++ E L Sbjct: 530 TRIQDEAHRFAIEYHRSLRSKTQVKSILDDIDGIGSVRRRALMKHFKDIENIRNATVEEL 589 Query: 590 ASIEGISKKIACKIYNHF 607 IEG++KK A + F Sbjct: 590 MKIEGMNKKAAIAVNEFF 607 >gi|172040666|ref|YP_001800380.1| excinuclease ABC subunit C [Corynebacterium urealyticum DSM 7109] gi|171851970|emb|CAQ04946.1| excinuclease ABC, subunit C [Corynebacterium urealyticum DSM 7109] Length = 696 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 194/677 (28%), Positives = 312/677 (46%), Gaps = 82/677 (12%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY D RV+YVGKA NL+ R+ +Y + R M+ N +++TV Sbjct: 17 TIPTQPGVYTFRDKHDRVIYVGKAKNLRARLSNYFQDFSQLHPRTRTMVQTANRVQWTVV 76 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E EAL LE IKR PRFN++ RDDK++P + I+ K + P Y +R YFG Sbjct: 77 GSEFEALNLEYTWIKRFNPRFNVMYRDDKTYPMLAISVKDRFPRAYLYRGPRRKGVRYFG 136 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P+ A+ +T+ SL R F +R+CA VFR RPCLL I RCS PC G+++ ++ Sbjct: 137 PYPKAWAIRETLESLTRVFPIRTCAPGVFRRHEALGRPCLLGYIDRCSAPCVGKVTEAEH 196 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 V + FL+G + ++ M +A D+E A RD+L A+ ++ Sbjct: 197 RSLVDQFSSFLAGNTEPVLRRVRGEMEEAAENLDFERAASLRDQLQAMEKAMEKQAVVFS 256 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D ++ ++ A IQ G+ G + ++ S+ + A+++ F+ QFY + Sbjct: 257 DATDADVLAIEQDELEAAIQIFHVRGGRIHGQRGWVVEH-SDESRAEMIGQFITQFYGGE 315 Query: 298 ---------------------------------------------PCPENILLSEEAEET 312 P P +L+ E Sbjct: 316 AELVAATETAVGGAASSHVDVGLATAINPASAAELGGLVGDVQVSPVPREVLVPELPAGN 375 Query: 313 SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE----ISHQMILKD 368 + L + G KV I VP++G+K+ ++ A NA ++ Q + L+D Sbjct: 376 ARLGAWLSELRGSKVTIRVPQRGDKKALLSNAHTNATQALAQHKLKRSGDITARSAALRD 435 Query: 369 FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DD 427 + + P RIE D SHI G V +VV + K YR++ + DD Sbjct: 436 LQEALWMDESPLRIECTDISHIQGTDVVASLVVFEDGLPKKADYRRYKIRDAAGDGHSDD 495 Query: 428 CAMMRMVLERRFSQLIK-----------------NEENLNFHPKKQEYSFPSWPDVVILD 470 A + V+ RRF + + EE ++ + +F P + I+D Sbjct: 496 VASIAEVVRRRFLRHKEDITAVPTGDDAGDRLEGEEELEQAKTEEPKRAFAYPPQLFIVD 555 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GG Q++AAQ VL +L V N +T++ IAK + E + + +++ LY + Sbjct: 556 GGPPQVNAAQKVLDELGV-NDVTLVGIAKRLE-----ELWLPEDPYPVIIPRDSDALYLV 609 Query: 531 QRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 Q +RDEAHRFAI HR++R K S LDE+ G+GP R++ L++ FG+V + ++ E + Sbjct: 610 QHIRDEAHRFAINFHRQQRSKRMRASVLDEVPGLGPKRRQELVKHFGSVAKVRAATVEEI 669 Query: 590 ASIEGISKKIACKIYNH 606 A + G +A K++ Sbjct: 670 AEVPGFGPALAKKVHEA 686 >gi|170732453|ref|YP_001764400.1| excinuclease ABC subunit C [Burkholderia cenocepacia MC0-3] gi|254245902|ref|ZP_04939223.1| Excinuclease ABC, C subunit [Burkholderia cenocepacia PC184] gi|229558023|sp|B1JYC2|UVRC_BURCC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|124870678|gb|EAY62394.1| Excinuclease ABC, C subunit [Burkholderia cenocepacia PC184] gi|169815695|gb|ACA90278.1| excinuclease ABC, C subunit [Burkholderia cenocepacia MC0-3] Length = 682 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 217/669 (32%), Positives = 328/669 (49%), Gaps = 70/669 (10%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D AG VLYVGKA +L+KR+ SY + RI M+++I I TVT Sbjct: 19 QLPHMPGVYRYYDTAGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H+ P + +R S Q YFGP Sbjct: 79 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-AHRFPRMAYYRGSVDKQNQYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RC+ PC G IS E Y V Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVGAISDEDYAVDV 197 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 A +FL G + +++ + M+ + +E A R+++++L+ + + Sbjct: 198 SNAARFLLGRQSEVMKELEQKMHAFAAELKFEQAAAVRNQMSSLATVLHQQAIEVGSDSD 257 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTD------------SESTNAQ----- 284 D ++ C+ G++ G +F E A+ Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPTHVESALTLAEGGLGEEVEPAEAVDAT 317 Query: 285 -------------------------------ILSYFLRQFYTDKPCPENILLSEEAEETS 313 +L F+ Q Y P +++S Sbjct: 318 ADAPVDTVADQPAEEAGSARGAASAASVEAEVLDAFIAQHYLGNRVPPVLVVSHAPASRD 377 Query: 314 LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKF 373 LLE+ +Q G+KV + QG++R + A NA + + LS + S Q + Sbjct: 378 LLEL-LSEQAGHKVSLVRQPQGQRRAWLSMAEQNARLALARLLSEQGSQQARTRALADTL 436 Query: 374 ALPHIP---KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAM 430 + RIE +D SH MG + VV + ++YR++N+ + DD A Sbjct: 437 SYDSDDLATLRIECFDISHTMGEATQASCVVYHHHKMQSSEYRRYNI--TGITPGDDYAA 494 Query: 431 MRMVLERRFSQL---------IKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 MR VL RR+ ++ + ++ +Q + P++V++DGGKGQ+ A+ Sbjct: 495 MRQVLTRRYEKMVEQAAQAAAVDEAAGIDGESTRQAEASSLLPNIVLIDGGKGQVEIARQ 554 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRF 540 V +L ++ + ++ +AKG R G+E G L L L + ++RDEAHRF Sbjct: 555 VFTELGLDTSM-LVGVAKGEGRKVGLETLVFADGRAPLELGKESAALMLVAQIRDEAHRF 613 Query: 541 AITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AIT R +R KA S L+E+ G+G R++ LL FG ++ + +S E LAS+EGIS + Sbjct: 614 AITGMRAKRAKARQTSRLEELEGVGAKRRQRLLARFGGLRGVVAASVEELASVEGISHAL 673 Query: 600 ACKIYNHFH 608 A +IY H Sbjct: 674 AEQIYKQLH 682 >gi|161501797|ref|NP_761850.2| excinuclease ABC subunit C [Vibrio vulnificus CMCP6] gi|30173420|sp|Q8D8C7|UVRC_VIBVU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|319999509|gb|AAO11377.2| excinuclease ABC, C subunit [Vibrio vulnificus CMCP6] Length = 610 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 201/619 (32%), Positives = 321/619 (51%), Gaps = 31/619 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M + V+YVGKA +L+KR+ SY + + ++S I I TV Sbjct: 11 LKTVTHQPGVYRMYNAEAVVIYVGKAKDLKKRLSSYFRKKVDSEKTKALVSNIAKIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EAL+LE N IK+ P++N+LLRDDKS+PYI ++ H+ P + HR + +G YF Sbjct: 71 THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLS-AHRHPRVSLHRGAKKRKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYM 181 GP+ AV +T++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC IS Y Sbjct: 130 GPYPDSGAVRETLHLIQKIFPVRQCEDTVYANRTRPCLMYQIGRCAGPCVSSVISDVDYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 E V + FL G ++ + E + + M A+ + +E A RD++ A+ +Q + Sbjct: 190 ELVGYLRLFLQGKDNQVLELLVQKMEIASQQLKFEDAAKFRDQIQAIRRVQEQQYVSEDS 249 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 MD +ACI G+ G+ + F K + ++ FL Q+Y Sbjct: 250 QEDMDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPQNTNAQEVFDSFLTQYYLSHN 309 Query: 299 ----CPENILLSEEAEET-SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 P I+L++E ++++ G KV+ G + + ++ + NA + T Sbjct: 310 EARTIPSRIILNQELAADVEAIQLALSDVAGRKVQFHTSPSGSRGRYLKLSNTNALTAMT 369 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 K++ +++ K A+ I R+E +D SH MG S + VV G VK +YR Sbjct: 370 TKINHKMTINQRFKALRDVLAMDSIA-RMECFDISHTMGESTIASCVVFNSEGPVKQEYR 428 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ + DD A M LERR+++ + E+ PD++ +DGGK Sbjct: 429 RYNI--TGITGGDDYAAMGQALERRYAKQLDVEK---------------IPDIIFIDGGK 471 Query: 474 GQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GQL+ A ++ + + R +I IAKG R G+E G+ L DP L+ IQ Sbjct: 472 GQLNRAHEIIVQYWGDWPKRPVMIGIAKGVTRKPGLETLITVDGDEFHLPSDDPALHLIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HR +R K S L+ I G+GP R++ LL+ G ++ + R+S E +A Sbjct: 532 HIRDESHNHAIAGHRAKRGKTRKTSALEGIEGVGPKRRQALLKYTGGLQELKRASVEEIA 591 Query: 591 SIEGISKKIACKIYNHFHK 609 + GIS +A IY + Sbjct: 592 KVPGISHSLAEIIYQALKQ 610 >gi|239814789|ref|YP_002943699.1| excinuclease ABC subunit C [Variovorax paradoxus S110] gi|239801366|gb|ACS18433.1| excinuclease ABC, C subunit [Variovorax paradoxus S110] Length = 653 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 216/644 (33%), Positives = 327/644 (50%), Gaps = 47/644 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PGVY+ D AG VLYVGKA NL+KR+ +Y ++ RI HMIS+I + TV + Sbjct: 16 LPQLPGVYRYFDAAGAVLYVGKARNLKKRVANYFQKSHGGTRIGHMISKIVRMETTVVRS 75 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLE N+IK LKPR+NIL RDDKS+PY+ I H+ P L +R + + YFGP+ Sbjct: 76 EAEALLLENNLIKTLKPRYNILFRDDKSYPYLKI-ASHEFPRLAYYRGAVDKKHRYFGPY 134 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 S AV+++I LQ+ F LR+C D+V+ +RTRPCLL+QIKRC+GPC G I+ E Y + V Sbjct: 135 PSAWAVKESIQLLQKVFRLRTCEDTVYANRTRPCLLYQIKRCTGPCVGYITPEAYAQDVA 194 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 A+ FL G + K+ M + K ++E A R++++A+S + + + Sbjct: 195 SAEAFLRGDTQLVLSKLEARMTEHAEKLEFEQAAELRNQMSAISRVLHQQSIEIASDKDV 254 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE---------------------ST 281 D ++ AC+ G++ G +F + Sbjct: 255 DILAVKVQGGKACVNLAMVRGGRHLGDRAYFPVHVEDAAQIHHGELDAEEGAAPAAADPI 314 Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 Q+L F+ Q Y D P P ++LS + I +Q G +V + ++R + Sbjct: 315 EVQVLEAFIAQHYIDVPVPATLVLSHLVSRELIEAI--SQQAGARVTAVFQPREQRRHWL 372 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTKKFAL---PHIPKRIEIYDNSHIMGCSAVGC 398 E A NA + L+ E S Q + L RIE +D SH G + Sbjct: 373 EMAETNAGLQLARLLAEEGSQQARTRALADALELAPDDLDNFRIECFDISHTAGEATQAS 432 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLI-----------KNEE 447 VV + +YR++N+ + DD A MR VL RR+ +L + Sbjct: 433 CVVFEHHTMQNREYRRYNIEG--ITPGDDYAAMRQVLHRRYGKLAEAMAAETEALPPGDA 490 Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507 + + P++V++DGGKGQ+S A+ V +L + + I+ + KG R G+ Sbjct: 491 ESDGGGAPPKTRTARMPELVLVDGGKGQVSMAREVFSELGLPLSL-IVGVEKGEGRKVGL 549 Query: 508 EKFFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--SPLDEINGIG 564 E+ G + L L + ++RDEAHRFAIT R +R K S L++I GIG Sbjct: 550 EELVFADGREKVYLGKDSAALMLVAQIRDEAHRFAITGMRAKRAKVRVGGSQLEDIPGIG 609 Query: 565 PLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 P R+ LLQ FG ++ ++ +S E +AS+EGI+ +A +IY H Sbjct: 610 PKRRARLLQRFGGIRGVAAASVEDIASVEGIATDLAEEIYRALH 653 >gi|269126428|ref|YP_003299798.1| excinuclease ABC subunit C [Thermomonospora curvata DSM 43183] gi|268311386|gb|ACY97760.1| excinuclease ABC, C subunit [Thermomonospora curvata DSM 43183] Length = 684 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 193/644 (29%), Positives = 313/644 (48%), Gaps = 44/644 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P+ PGVY+ D GRV+YVGKA +L+ R+ SY + R M+ + +TV Sbjct: 13 TIPDSPGVYRFRDEHGRVIYVGKAKSLRSRLNSYFADFASLHPRTQTMLRTAAGVDWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE + IK PRFN+ RDDKS+PY+ +T + P + R + YFG Sbjct: 73 GTEVEALQLEYSWIKEFNPRFNVRYRDDKSYPYLAVTLDEEFPRVMVMRGAKRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F +R+C VF RH RPCLL I +CS PC G I + + Sbjct: 133 PYSHAWAIRETVDLLLRVFPVRTCKPGVFKRARHSDRPCLLGYIDKCSAPCVGRIDAAAH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + F++G ++I R M +A E+YE A RD + AL + Sbjct: 193 RRLAEDFCAFMAGDTGRFIKEIERRMLEAAAAEEYERAARLRDDMRALQRALEKQAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D + + A +Q + G+ RG + + S+ T A ++ +FL Q Y + Sbjct: 253 EAVDCDVIAFAEDPLEAAVQVFYVRGGRIRGQRGWVVDKVSDVTTADLVEHFLLQLYGES 312 Query: 298 P-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P +L+ E + + + ++ G V+I VP++G+K+ ++E NA + Q Sbjct: 313 EAVPREVLVPAEPPDAAAMAELLAERRGGPVRIRVPRRGDKKALLETVARNAAEALRQHK 372 Query: 357 STEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + L++ + LP P RIE YD S++ G + V MVV + K++Y Sbjct: 373 TRRAGDLTTRSKALQEIQEALELPEAPLRIECYDVSNLQGTNVVASMVVFEDGLARKSEY 432 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNE-----------------------ENL 449 R+F + V+ QDD + V+ RRF + + E Sbjct: 433 RRFAIKT--VQGQDDVRSIHEVITRRFKRYLAERDKAGQEGGDAGGVLASYGFQEAGERE 490 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 P F P++V++DGG Q++AAQ L++L V + + + +AK + E Sbjct: 491 QSAPAGGARKFAYPPNLVVVDGGPAQVAAAQRALEELGVAD-VAVCGLAKRME-----EI 544 Query: 510 FFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRK 568 + + + ++L L+ +QR+RDEAHRFA+ HR+RR K LD + G+GP R+ Sbjct: 545 WLPGEEDPVILPRGSEGLFLMQRVRDEAHRFAVAYHRQRRSKAMTAGELDGVPGLGPARR 604 Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 LL+ FG++K + ++ +A + GI + A +I H Sbjct: 605 TALLKHFGSLKRLREATVAQIAEVPGIGPRTAEQIAAALHGGAP 648 >gi|25300658|pir||C90960 excinuclease ABC subunit C [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) gi|25300671|pir||D85808 excinuclease ABC, chain C - Escherichia coli (strain O157:H7, substrain EDL933) gi|12516011|gb|AAG56928.1|AE005414_5 excinuclease ABC, subunit C; repair of UV damage to DNA [Escherichia coli O157:H7 str. EDL933] gi|13362119|dbj|BAB36074.1| excinuclease ABC subunit C [Escherichia coli O157:H7 str. Sakai] gi|73855218|gb|AAZ87925.1| excinuclease ABC, subunit C [Shigella sonnei Ss046] gi|209767058|gb|ACI81841.1| excinuclease ABC subunit C [Escherichia coli] gi|209767060|gb|ACI81842.1| excinuclease ABC subunit C [Escherichia coli] gi|209767062|gb|ACI81843.1| excinuclease ABC subunit C [Escherichia coli] gi|209767064|gb|ACI81844.1| excinuclease ABC subunit C [Escherichia coli] gi|209767066|gb|ACI81845.1| excinuclease ABC subunit C [Escherichia coli] gi|281178975|dbj|BAI55305.1| excinuclease ABC subunit C [Escherichia coli SE15] Length = 588 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 209/602 (34%), Positives = 329/602 (54%), Gaps = 31/602 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D G V+YVGKA +L+KR+ SY SN + + +++QI I TVT TE EALLLE Sbjct: 1 MYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTETEALLLEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YFGPF + AV +T Sbjct: 61 NYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193 + LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y + V + FLSG Sbjct: 120 LALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NRMDCFSLYHNK 251 + + ++ M A+ ++E A RD++ A+ + + +D + + Sbjct: 180 KDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGDDLDVIGVAFDA 239 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSE 307 +AC+ F G+ G+ ++F K + ++++ F+ QFY + P ILL Sbjct: 240 GMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDF 299 Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367 + +LL S + G K+ + +G++ + ++ A NA + T KLS + + L Sbjct: 300 NLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLT 359 Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427 LP + R+E +D SH MG V VV NG ++ +YR++N+ + DD Sbjct: 360 ALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNI--TGITPGDD 416 Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487 A M VL RR+ + I + + PDV+++DGGKGQL+ A+ V +L+ Sbjct: 417 YAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQLAQAKNVFAELD 461 Query: 488 V---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 V +N ++ +AKG R AG+E F +GE L P L+ IQ +RDE+H AI Sbjct: 462 VSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIG 521 Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A + GIS+ +A K Sbjct: 522 GHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEK 581 Query: 603 IY 604 I+ Sbjct: 582 IF 583 >gi|107022219|ref|YP_620546.1| excinuclease ABC subunit C [Burkholderia cenocepacia AU 1054] gi|116689165|ref|YP_834788.1| excinuclease ABC, C subunit [Burkholderia cenocepacia HI2424] gi|119367634|sp|Q1BXT2|UVRC_BURCA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|189038025|sp|A0K5W8|UVRC_BURCH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|105892408|gb|ABF75573.1| Excinuclease ABC subunit C [Burkholderia cenocepacia AU 1054] gi|116647254|gb|ABK07895.1| Excinuclease ABC subunit C [Burkholderia cenocepacia HI2424] Length = 681 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 216/668 (32%), Positives = 327/668 (48%), Gaps = 69/668 (10%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D G VLYVGKA +L+KR+ SY + RI M+++I I TVT Sbjct: 19 QLPHMPGVYRYYDTTGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H+ P + +R S Q YFGP Sbjct: 79 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-AHRFPRMAYYRGSVDKQNQYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RC+ PC G IS E Y V Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVGAISEEDYAVDV 197 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 A +FL G + +++ + M+ + +E A R+++++L+ + + Sbjct: 198 SNAARFLLGRQSEVMKELEQKMHAFAAELKFEQAAAVRNQMSSLATVLHQQAIEVGSDSD 257 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTD------------SESTNAQ----- 284 D ++ C+ G++ G +F E A+ Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPTHVESALTLAEGGLGEEVEPAEAVDAT 317 Query: 285 ------------------------------ILSYFLRQFYTDKPCPENILLSEEAEETSL 314 +L F+ Q Y P +++S L Sbjct: 318 ADAPVDTVPDQPAEEAGSARGAAAASVEAEVLDAFIAQHYLGNRVPPVLVVSHAPASRDL 377 Query: 315 LEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFA 374 LE+ +Q G+KV + QG++R + A NA + + LS + S Q + + Sbjct: 378 LEL-LSEQAGHKVSLVRQPQGQRRAWLSMAEQNARLALARLLSEQGSQQARTRALADTLS 436 Query: 375 LPHIP---KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMM 431 RIE +D SH MG + VV + ++YR++N+ + DD A M Sbjct: 437 YDSDDLATLRIECFDISHTMGEATQASCVVYHHHKMQSSEYRRYNI--TGITPGDDYAAM 494 Query: 432 RMVLERRFSQL---------IKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 R VL RR+ ++ + ++ +Q + P++V++DGGKGQ+ A+ V Sbjct: 495 RQVLTRRYEKMVEQAAQAAAVDEAAGIDGESTRQAEASSLLPNIVLIDGGKGQVEIARQV 554 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFA 541 +L ++ + ++ +AKG R G+E G L L L + ++RDEAHRFA Sbjct: 555 FTELGLDTSM-LVGVAKGEGRKVGLETLVFADGRAPLELGKESAALMLVAQIRDEAHRFA 613 Query: 542 ITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 IT R +R KA S L+E+ G+G R++ LL FG ++ + +S E LAS+EGIS +A Sbjct: 614 ITGMRAKRAKARQTSRLEELEGVGAKRRQRLLARFGGLRGVVAASVEELASVEGISHALA 673 Query: 601 CKIYNHFH 608 +IY H Sbjct: 674 EQIYKQLH 681 >gi|302546283|ref|ZP_07298625.1| excinuclease ABC subunit C [Streptomyces hygroscopicus ATCC 53653] gi|302463901|gb|EFL26994.1| excinuclease ABC subunit C [Streptomyces himastatinicus ATCC 53653] Length = 700 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 187/660 (28%), Positives = 312/660 (47%), Gaps = 66/660 (10%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 Q+PE PGVY+ D GRV+YVGKA +L++R+ SY N R M++ + + Sbjct: 10 KPGQIPESPGVYKFRDEHGRVIYVGKAKSLRQRLSSYFQDLANLHPRTRTMVTTAAAVEW 69 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TEVEAL LE + IK PRFN+ RDDKS+P + +T + P + R + Sbjct: 70 TVVSTEVEALQLEYSWIKEFDPRFNVKYRDDKSYPSLAVTLNEEFPRVQVMRGAKKKGVR 129 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP+A A+ +T++ + R F +R+C+ VF+ RPCLL I +CS PC G +S+ Sbjct: 130 YFGPYAQAWAIRETVDLMLRVFPVRTCSAGVFKRSAQIGRPCLLGYIGKCSAPCVGRVSA 189 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E++ E E F++G ++ + M QA + +YE A RD + AL N Sbjct: 190 EEHRELADEFCDFMAGRTGTYIRRLEQQMQQAAEEMEYEKAARLRDDIGALKSAMEKNAV 249 Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D ++ ++ A +Q G+ RG + A ++ + L+Q Y Sbjct: 250 VLADATDADLIAVAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEAVDTADLVEHALQQLY 309 Query: 295 TDK---PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 ++ P+ +L+ + + ++ G +V + +P++G+K+ ++ NA ++ Sbjct: 310 GEERGDAVPKEVLVPAVPDPAEPVTQWLSERRGSRVDLRIPQRGDKKDLMATVQRNAQQA 369 Query: 352 HTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 + S L++ + L P RIE +D SH+ G V MVV + Sbjct: 370 LALHKTKRASDLTTRSRALEEIAEALGLDSAPLRIECFDISHLQGDDVVASMVVFEDGLA 429 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNF---------------- 451 K++YR+F + QDD M V+ RRF + ++ ++ Sbjct: 430 RKSEYRRFQIKS--FAGQDDVRSMHEVVGRRFRRYLQEKQKSGEWEENAEPAQETPGEPA 487 Query: 452 ---------------------------HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484 + F P +V++DGG+ Q++AA+ L Sbjct: 488 QETPEPGEPAQETPAEAPAVEETSGPLDDDGRPKRFAYPPQLVVVDGGQPQVAAAKRALD 547 Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544 +L V++ + + +AK + E + + + +VL LY +QR+RDEAHRFAIT Sbjct: 548 ELGVDD-VAVCGLAKRLE-----EVWLPDEDDPVVLPRSSEGLYLLQRVRDEAHRFAITY 601 Query: 545 HRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 R +R KA PLD + G+G RK LL+ FG+VK + ++ E + + G+ +K A + Sbjct: 602 QRSKRAKAMKAGPLDAVPGLGDSRKHALLKHFGSVKRLRAATVEQICEVPGVGRKTAETV 661 >gi|288917081|ref|ZP_06411451.1| excinuclease ABC, C subunit [Frankia sp. EUN1f] gi|288351450|gb|EFC85657.1| excinuclease ABC, C subunit [Frankia sp. EUN1f] Length = 758 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 197/694 (28%), Positives = 309/694 (44%), Gaps = 90/694 (12%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFT 61 +PE PGVY+ D GRV+YVGKA NL+ R+ +Y + R HM++ +++ +T Sbjct: 11 PRSIPETPGVYRFRDEHGRVIYVGKAKNLRARLANYFADVHTLHPRTQHMVTTASSVEWT 70 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 + TEVEAL LE IK PRFN+ RDDKS+P + +T + P L R Y Sbjct: 71 IVSTEVEALQLEYTWIKEFDPRFNVRYRDDKSYPSLAVTLYEEFPRLQVMRGPKRRGVRY 130 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSE 178 FGP+A A+ +T++ L R F R+C+ VF+ RPCLL I RCS PC G + + Sbjct: 131 FGPYAHAWAIRETLDLLLRVFPARTCSSGVFKRAGQVGRPCLLGYIDRCSAPCVGRVDAA 190 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 + E V + F+SG ++ R M A ++YE A RD + AL + Sbjct: 191 THREIVEDFCDFMSGQTGRYLRRLEREMQAAADAQEYERAARLRDDIGALRRAVEKQAVV 250 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D + ++ A +Q + G+ RG + + + T ++ FL Q Y Sbjct: 251 LPDGTDADVIAFAQDELEAAVQIFYVRAGRVRGQRGWVVDKLDDVTTGDLVEKFLTQEYL 310 Query: 296 DK----------------------------------PCPENILLSEEAEETSLLEISFFK 321 D P IL+ E + + + Sbjct: 311 DGAGGSAAGSSGTGSSGTGSSDTGAGGTGADTGYAGEIPREILVPELPPDAEAVTELLSQ 370 Query: 322 QYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPH 377 G +V + VP++G+KR ++E NA ++ T + + L D + LP Sbjct: 371 ARGSRVDLRVPRRGDKRNLMETVERNAKQAFTLHRTKRAGDLTARSRALADLQEALELPD 430 Query: 378 IPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLER 437 P RIE +D S++ G + V MVV + K++YR+F + V QDD A M + R Sbjct: 431 APLRIECFDVSNMQGTNVVASMVVFEDGLPRKSEYRRFAIRG--VDGQDDVASMHETIHR 488 Query: 438 RFSQLIKNEEN----------------------------------LNFHPKKQEYSFPSW 463 RFS+ + L + F Sbjct: 489 RFSRYLAERARTGELAGYPGAEVADGGEAEAAGMAAMAEDVGGPSLRDPETGRPRRFAYP 548 Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVE---NRITIISIAKGPKRSAGMEKFFVKKGEALVL 520 P++V++DGG Q++AA L +L+VE + + +AK + E + + E ++L Sbjct: 549 PNLVVVDGGPPQVAAAARALDELDVESGPGGVALCGLAKRLE-----EIWLPDQDEPVIL 603 Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVK 579 LY +QR+RDEAHRFAIT HR++R S LD + G+G R++ LL+ FG+V Sbjct: 604 PRTSEALYLLQRVRDEAHRFAITYHRQKRSASMVVSALDGVPGLGDTRRKALLRQFGSVA 663 Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 + ++ E +A + GI + A I ++ Sbjct: 664 KVRAATAEEIAQVPGIGPRTAEAIVAALARSAPG 697 >gi|229845394|ref|ZP_04465525.1| excinuclease ABC subunit C [Haemophilus influenzae 6P18H1] gi|229811702|gb|EEP47400.1| excinuclease ABC subunit C [Haemophilus influenzae 6P18H1] Length = 609 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 212/616 (34%), Positives = 337/616 (54%), Gaps = 32/616 (5%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 PGVY+M D +V+YVGKA +L+KR+ SY N + + +++ I++I T+T +E Sbjct: 13 HEPGVYRMYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVASIHHIDTTLTSSET 72 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EALLLE N IK +PR+N+LLRDDKS+P+IL+T K + P + +R S G YFGP+ Sbjct: 73 EALLLEHNFIKLYQPRYNVLLRDDKSYPFILLT-KERHPRITSYRGSKKFAGEYFGPYPH 131 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHE 186 AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCS PC IS E+Y + V Sbjct: 132 AGAVRETLSLLQKLFPVRQCENSVYSNRSRPCLQYQIGRCSAPCVQGYISDEEYNQQVEL 191 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMD 243 A+ FL G + + + + M QA+ D+E A +RD++ A+ + + MD Sbjct: 192 ARLFLQGKDQLVLDYLIGKMEQASRNLDFEQAARYRDQIQAVRSVIEKQFVSNERLDDMD 251 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPC 299 S+ + LAC+Q F G+ G ++F K + + +++ F+ QFY + Sbjct: 252 IMSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTETFVGQFYLQGHQGRSI 311 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P +I++ + E S LE Q G KV I +G+K K ++ A +NA + +L Sbjct: 312 PNSIIVDRQLAEKSGLEQLLTDQAGRKVTIQESVKGDKSKYLQLAQVNAKAALNVQLKQS 371 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + LP I R+E +D SH MG V VV + G +K+ YR+FN+ Sbjct: 372 SRMSERYQALCDLLNLPEIK-RMECFDISHTMGNQTVASCVVFNQEGPLKSDYRRFNIEG 430 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A M L++R+ + ++ ++ PD++ +DGGKGQL+ A Sbjct: 431 --ITGGDDYAAMEQALQKRYERDLEEDK---------------IPDIIFIDGGKGQLNRA 473 Query: 480 QGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRD 535 V + L V +NR +I +AKG R AG E + K E + L L+ IQ +RD Sbjct: 474 LNVFQHLQVKWDKNRPHLIGVAKGVDRRAGQEVLIISKQEREIHLPDDSLALHLIQHIRD 533 Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E+H AI+ HRK+R+KA S L+ I G+G R++ LL+ G ++ + +++ + +AS+ G Sbjct: 534 ESHNHAISGHRKKRQKAFTQSGLETIEGVGAKRRQALLKYLGGLQGVKKATLDEIASVPG 593 Query: 595 ISKKIACKIYNHFHKN 610 IS K+A +I+ + Sbjct: 594 ISPKLAERIFETLKND 609 >gi|254161967|ref|YP_003045075.1| excinuclease ABC subunit C [Escherichia coli B str. REL606] gi|253973868|gb|ACT39539.1| excinuclease ABC subunit C [Escherichia coli B str. REL606] gi|253978062|gb|ACT43732.1| excinuclease ABC subunit C [Escherichia coli BL21(DE3)] gi|323158604|gb|EFZ44618.1| excinuclease ABC, C subunit [Escherichia coli E128010] Length = 588 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 209/602 (34%), Positives = 329/602 (54%), Gaps = 31/602 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D G V+YVGKA +L+KR+ SY SN + + +++QI I TVT TE EALLLE Sbjct: 1 MYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTETEALLLEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YFGPF + AV +T Sbjct: 61 NYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193 + LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y + V + FLSG Sbjct: 120 LALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NRMDCFSLYHNK 251 + + ++ M A+ ++E A RD++ A+ + + +D + + Sbjct: 180 KDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGDDLDVIGVAFDA 239 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSE 307 +AC+ F G+ G+ ++F K + ++++ F+ QFY + P ILL Sbjct: 240 GMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDF 299 Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367 + +LL S + G K+ + +G++ + ++ A NA + T KLS + + L Sbjct: 300 NLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLT 359 Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427 LP + R+E +D SH MG V VV NG ++ +YR++N+ + DD Sbjct: 360 ALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNI--TGITPGDD 416 Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487 A M VL RR+ + I + + PDV+++DGGKGQL+ A+ V +L+ Sbjct: 417 YAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQLAQAKNVFAELD 461 Query: 488 V---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 V +N ++ +AKG R AG+E F +GE L P L+ IQ +RDE+H AI Sbjct: 462 VSWDKNHPLLLGVAKGVDRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIG 521 Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A + GIS+ +A K Sbjct: 522 GHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEK 581 Query: 603 IY 604 I+ Sbjct: 582 IF 583 >gi|110805886|ref|YP_689406.1| excinuclease ABC subunit C [Shigella flexneri 5 str. 8401] gi|30041609|gb|AAP17337.1| excinuclease ABC, subunit C [Shigella flexneri 2a str. 2457T] gi|56383551|gb|AAN43507.2| excinuclease ABC, subunit C [Shigella flexneri 2a str. 301] gi|81245030|gb|ABB65738.1| excinuclease ABC, subunit C [Shigella boydii Sb227] gi|110615434|gb|ABF04101.1| excinuclease ABC, subunit C [Shigella flexneri 5 str. 8401] Length = 588 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 209/602 (34%), Positives = 329/602 (54%), Gaps = 31/602 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D G V+YVGKA +L+KR+ SY SN + + +++QI I TVT TE EALLLE Sbjct: 1 MYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTETEALLLEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YFGPF + AV +T Sbjct: 61 NYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193 + LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y + V + FLSG Sbjct: 120 LALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NRMDCFSLYHNK 251 + + ++ M A+ ++E A RD++ A+ + + +D + + Sbjct: 180 KDDQVLTQLISRMETASQNLEFEEAACIRDQIQAVRRVTEKQFVSNTGDDLDVIGVAFDA 239 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSE 307 +AC+ F G+ G+ ++F K + ++++ F+ QFY + P ILL Sbjct: 240 GMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDF 299 Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367 + +LL S + G K+ + +G++ + ++ A NA + T KLS + + L Sbjct: 300 NLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLT 359 Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427 LP + R+E +D SH MG V VV NG ++ +YR++N+ + DD Sbjct: 360 ALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNI--TGITPGDD 416 Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487 A M VL RR+ + I + + PDV+++DGGKGQL+ A+ V +L+ Sbjct: 417 YAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQLAQAKNVFAELD 461 Query: 488 V---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 V +N ++ +AKG R AG+E F +GE L P L+ IQ +RDE+H AI Sbjct: 462 VSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIG 521 Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A + GIS+ +A K Sbjct: 522 GHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEK 581 Query: 603 IY 604 I+ Sbjct: 582 IF 583 >gi|319792638|ref|YP_004154278.1| excinuclease ABC, c subunit [Variovorax paradoxus EPS] gi|315595101|gb|ADU36167.1| excinuclease ABC, C subunit [Variovorax paradoxus EPS] Length = 656 Score = 515 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 217/647 (33%), Positives = 327/647 (50%), Gaps = 50/647 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PGVY+ D AG VLYVGKA NL+KR+ +Y ++ RI HMIS+I + TV + Sbjct: 16 LPQLPGVYRYFDAAGAVLYVGKARNLKKRVANYFQKSHGGTRIGHMISKIVRMETTVVRS 75 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLE N+IK LKPR+NIL RDDKS+PY+ I H P L +R S + YFGP+ Sbjct: 76 EAEALLLENNLIKTLKPRYNILFRDDKSYPYLKI-ASHAFPRLAYYRGSVDKKHRYFGPY 134 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 S AV+++I LQ+ F LR+C D+V+ +RTRPCLL+QIKRC+GPC G I+ E Y + V Sbjct: 135 PSAWAVKESIQLLQKVFKLRTCEDTVYANRTRPCLLYQIKRCTGPCVGYITPEAYAQDVA 194 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 A+ FL G + K+ + M K ++E A R++++A+S + + + Sbjct: 195 SAEAFLMGDTQLVLSKLEQRMTTHAEKLEFEQAAELRNQMSAISRVLHQQSIEIASDKDV 254 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS---------------------EST 281 D ++ AC+ G++ G +F + Sbjct: 255 DILAVKVQGGKACVNLAMVRGGRHLGDRPYFPVHVEDAAQIHHGEMDAEQGVEAVAADPI 314 Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 Q+L F+ Q Y D P P ++LS + I +Q G +V + ++R + Sbjct: 315 EVQVLEAFIAQHYIDVPVPATLVLSHLVSRELIEAI--SQQAGGRVTAVFQPREQRRHWL 372 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTKKFALPH---IPKRIEIYDNSHIMGCSAVGC 398 E A NA + L+ E S Q + + L R+E +D SH G + Sbjct: 373 EMAETNAGLQLARLLAEEGSQQARTRALAEALELACDDLDNFRVECFDISHTAGEATQAS 432 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLI--------------K 444 VV + +YR++N+ + DD A MR VL RR+ +L Sbjct: 433 CVVFEHHTMQNKEYRRYNIEG--ITPGDDYAAMRQVLHRRYGKLAEAMAAETEALPPGDA 490 Query: 445 NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRS 504 E + + P++V++DGGKGQ+S A+ V +L + + I+ + KG R Sbjct: 491 ESEGIEGSEASPKTRTARMPELVLVDGGKGQVSMAREVFSELGLPLSL-IVGVEKGEGRK 549 Query: 505 AGMEKFFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--SPLDEIN 561 G+E+ G + L L + ++RDEAHRFAIT R +R K S L++I Sbjct: 550 VGLEELVFADGREKVYLGKDSAALMLVAQIRDEAHRFAITGMRAKRAKVRVGGSQLEDIP 609 Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 GIGP R+ LLQ FG ++ ++ +S E +AS+EGI+ +A +IY H Sbjct: 610 GIGPKRRARLLQRFGGIRGVAAASVEDIASVEGIATDLAEEIYKALH 656 >gi|307131661|ref|YP_003883677.1| Excinuclease ABC subunit C [Dickeya dadantii 3937] gi|306529190|gb|ADM99120.1| Excinuclease ABC subunit C [Dickeya dadantii 3937] Length = 610 Score = 515 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 210/618 (33%), Positives = 334/618 (54%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D V+YVGKA +L+KR+ SY + + + ++ I I T+ Sbjct: 11 LKTVTSQPGVYRMYDADDTVIYVGKAKDLKKRLSSYFRAQVASRKTEALVKSIRQIDVTI 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IKR +PR+N+LLRDDKS+P I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKRYQPRYNVLLRDDKSYPLIFLS-GDTHPRLSVHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + +AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGNAVRETLMLLQKLFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVNGLVSEEEYQ 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IY 239 V + FL G + + ++ M A+ + +E A RD++ A+ + Sbjct: 190 RQVEYVRLFLLGKDQQVLTRLIERMETASRELRFEEAARIRDQIQAVRRVTEKQFVSGDG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + +AC+ F G+ G+ ++F K + A+++ F+ QFY Sbjct: 250 DDLDVIGVAFEAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELAEVVQTFVGQFYLQGSV 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P +ILL E LL S +Q G K++I +G++ + ++ A NAH + T K Sbjct: 310 SRTLPSDILLDFSLPEHQLLAESLTEQAGRKIQIQTRPRGDRARYLKLARTNAHTALTTK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + Q L + R+E +D SH MG V VV +G ++++YR++ Sbjct: 370 LSQQSTVQQRLAALASVLGIE-KINRMECFDISHTMGEQTVASCVVFNADGPLRSEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I + PDV+++DGGKGQ Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKSIDEGK---------------VPDVIVIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQ 531 L+ A+ V L V ++R ++ +AKG R AG+E F + GE + L P L+ IQ Sbjct: 472 LAQAKEVFASLQVPWDKSRPLLLGVAKGSDRKAGLETLFFEATGEGVALPADSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RD++H AI+ HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A Sbjct: 532 HIRDDSHNHAISGHRKQRAKVKSTSSLETIEGVGPKRRQMLLKYMGGLQPLMNASVEDIA 591 Query: 591 SIEGISKKIACKIYNHFH 608 ++ GIS +A KI++ Sbjct: 592 NVPGISHALAEKIFHALK 609 >gi|91773432|ref|YP_566124.1| excinuclease ABC subunit C [Methanococcoides burtonii DSM 6242] gi|119367668|sp|Q12W02|UVRC_METBU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|91712447|gb|ABE52374.1| Excinuclease ABC, C subunit [Methanococcoides burtonii DSM 6242] Length = 604 Score = 515 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 203/619 (32%), Positives = 324/619 (52%), Gaps = 33/619 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +PE PGVY M DI+ ++Y+GKA +L+KR+ Y S+ NH+ + M+ +I ++ + Sbjct: 4 DISNIPELPGVYLMKDISDNIIYIGKAKSLKKRVSQYFQSSKNHSSKTRAMVRKIADVDY 63 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +EV AL+LEAN++K+ +P +NI L+DDK +PY+ +T K P ++ R Sbjct: 64 IVTESEVAALILEANLVKKNRPHYNIDLKDDKRYPYVKVTVNTKFPKIFITRRRLMDGAL 123 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGP+ +V V +T++ + + F ++ C V R CL + I RC PC G I+ E+Y Sbjct: 124 YFGPYTNVKPVRQTLDMISQIFRIKRCNRRVDGKGKRACLNYHIDRCYAPCNGSITPEEY 183 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 V EA K G +++ MN + ++YESA + RD++ AL + + Sbjct: 184 RNNVMEAVKLFKGETSGTIKELQEKMNIHAIAQEYESAAVIRDQIDALKSLSRQQTATAG 243 Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT-DSESTNAQILSYFLRQFYTDK 297 + D + + +Q + G G L D+ A++ F++Q+Y D Sbjct: 244 NDDSDIIATASDDETVFVQIFYIRDGNMVGKADMSLSWGDATGNIARVTEEFIKQYYQDA 303 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH---RSHTQ 354 P P IL+ E L+ ++ V+I VP++G K++++E A NA Sbjct: 304 PVPPEILVQYPIPEKELVIKWLSEKAARSVQIQVPQRGNKKRLMEMAEQNAQMTLEQSHL 363 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 K S + L AL +P IE +D S+I G AVG MVV ++YR Sbjct: 364 KQSDKEQALQALLQLRDALALSTLPAHIEGFDISNISGTDAVGSMVVFENGLPANSKYRH 423 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 FN+ VK DD AMM V++RR++ ++ L PD++++DGG G Sbjct: 424 FNIKT--VKGIDDFAMMAEVVKRRYTHQKAEKDKL--------------PDLILIDGGPG 467 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG--EALVLNMRDPILYFIQR 532 Q+SAA G LK+L ++ I ++ +AK + K G E ++L L + R Sbjct: 468 QVSAAMGSLKELQLD--IPLVGLAKRFEH-----IIVPKDGTDEVVILPHTSEALKVLMR 520 Query: 533 LRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+HRFA+++HR+RR + ++S LD I GIG RK+ LL F +++ I +S E L + Sbjct: 521 VRDESHRFAVSSHRRRRTARLSHSELDTIPGIGASRKKALLNHFSSIEQIRHASVEELTA 580 Query: 592 IEGISKKIACKIYNHFHKN 610 +EGISK +A +I HF+K Sbjct: 581 VEGISKGLAERIVAHFNKE 599 >gi|319941052|ref|ZP_08015388.1| UvrABC system protein C [Sutterella wadsworthensis 3_1_45B] gi|319805409|gb|EFW02211.1| UvrABC system protein C [Sutterella wadsworthensis 3_1_45B] Length = 686 Score = 515 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 197/632 (31%), Positives = 306/632 (48%), Gaps = 46/632 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PG Y+ G LYVGKA +L+ R+ SY + RI M+S+I I TVT Sbjct: 54 TLPHLPGCYRYFGADGTCLYVGKARDLKNRVSSYFRKTGLSPRIALMVSRIARIETTVTR 113 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK LKP +NI LRDD S+PYI I P L +R + +FGP Sbjct: 114 SEAEALLLENNLIKTLKPHYNIRLRDDASYPYIRIGAG-DFPRLSYYRGGVDKRSKFFGP 172 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + S A I LQ+ F LR+C +SVF++R+RPCLL QI RC+ PC G I+ E Y Sbjct: 173 YPSSSAARTAIEMLQKAFQLRTCEESVFKNRSRPCLLGQIGRCTAPCCGLITKEAYAADC 232 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDC 244 A++FL G + ++ + + M A+ +E A RDR+AAL+ +++ D Sbjct: 233 RRAEQFLEGRSIDVLNDLEKRMWAASDAWQFEEAAHLRDRIAALTQMRHQQAIETTGGDV 292 Query: 245 FSLYHN----KNLACIQTCFFHFGQNRGTCTFFLK--------TDSESTNAQILSYFLRQ 292 + + + C+ G++ G F K D + +++ F+ Q Sbjct: 293 DADIVAASIGQGIVCVNLAMVRGGRHLGDRAIFPKAGDRAPTAQDLMPSKGEVIEAFVSQ 352 Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYG---YKVKITVPKQGEKRKIIEQALINAH 349 Y + P P +++ + + L +V + Q +R+ +E + A Sbjct: 353 HYAELPIPALLIVEPDPADPELPARLSSLLTDLAGRRVPVVSEPQETRRRWLEMCIQGAQ 412 Query: 350 RSHTQKLSTEISHQMILKDFTKK-------FALPHIPKRIEIYDNSHIMGCSAVGCMVVV 402 + ++L+ + L D + +E +D SH G + VV Sbjct: 413 IALARRLAESGTQTARLNDLMAVLGPSFAPKNDDPMEFSVECFDISHTQGEATQASCVVF 472 Query: 403 GENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPS 462 E + YR+FN+ ++ DD A M+ VL RR++ + E L Sbjct: 473 REGRMQSSLYRRFNI--AGIEPGDDYAAMKQVLARRYAPAARGEAEL------------- 517 Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-----KGEA 517 P VV++DGG+GQ+ A+ V + L ++ I+ +AKG R G+E + E Sbjct: 518 -PTVVLIDGGRGQVEMAREVFEDLGLDVG-AIVGVAKGEGRKTGLETLVFPVIDGHRREP 575 Query: 518 LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFG 576 L+L L I +RDEAHRFAIT R +R K S L++++G+GP R+ LL FG Sbjct: 576 LILGEMSRALMLIAEIRDEAHRFAITGMRAKRAKTRNTSKLEDLSGVGPKRRAKLLGHFG 635 Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNHFH 608 +K + +S E +A + GIS+K+A +IY+ H Sbjct: 636 GMKQLKNASAEDIAQVPGISRKLAEQIYSQLH 667 >gi|71066567|ref|YP_265294.1| excinuclease ABC subunit C [Psychrobacter arcticus 273-4] gi|90111758|sp|Q4FQ48|UVRC_PSYA2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|71039552|gb|AAZ19860.1| Excinuclease ABC subunit C [Psychrobacter arcticus 273-4] Length = 614 Score = 515 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 198/614 (32%), Positives = 313/614 (50%), Gaps = 29/614 (4%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+ML G +LYVGKA +L+ R+ SY + ++++I+NI +T Sbjct: 22 QRLPNLPGVYKMLGKNGDILYVGKAKSLKSRVNSYFAKTIDHPKTRALVARIHNIETIIT 81 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI-QGSYF 122 +E EALLLE N+IK +P +N+LLRDDKS+ Y+ I+ P L R +G +F Sbjct: 82 RSETEALLLEQNLIKEYRPPYNVLLRDDKSYLYVFISADQPYPRLAYGRGKVNHQKGCFF 141 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF S A ++T+ +Q+ F +R C ++ F+ R RPCL +QIKRC PC G +S+E+Y E Sbjct: 142 GPFPSAHAAKETLVLMQKMFQMRQCTNTFFKQRKRPCLEYQIKRCRAPCVGLVSAEEYSE 201 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--N 240 V+ +FL G + ++ + M + + D+E A+ +RD+L+ L +Q Sbjct: 202 DVNNTIRFLKGDSSDIHSALIEKMEASAEELDFEKAVFYRDQLSMLREVQAKQAVYTVQG 261 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KP 298 D ++ + C+ G+ G +F DS A LS F+ FY Sbjct: 262 EADVIAIASQVGMTCVNVLTVRGGRVLGGKNYFPDVDSSQPLADNLSAFITSFYFQVTDD 321 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P I+LS E + + + +G KV I + + + ++ A +N + + KL Sbjct: 322 LPAEIMLSHELPDQVAVSEALASHFGSKVVIKTNVREHRAEWLDLAKLNTNNALKTKLGD 381 Query: 359 EISHQMILKDFTK--KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + RIE +D SH MG + +G VV ++G + YR++ Sbjct: 382 YLELHARFGALKDVLADITDRTIDRIECFDISHTMGEATIGGCVVFDQSGSRRRDYRQYA 441 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 +H + DD A M+ VL RR+ + PD++++DGGKGQL Sbjct: 442 IHD--IVGGDDYAAMKQVLTRRYKK-------------------QPLPDLLLIDGGKGQL 480 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 A+ VL +L + +I +AKG R AG+E E L L M L+ + +RDE Sbjct: 481 GIAKEVLTELGMLGDTLLIGVAKGEGRKAGLEVLHFIDHEPLDLPMDSKALHLLMHIRDE 540 Query: 537 AHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 AHRFAIT HRK+R K+ + S L+ I G+G R+R LL FG ++ + +S + LA ++GI Sbjct: 541 AHRFAITAHRKKRDKRRSSSVLEVIPGLGEKRRRDLLNHFGGLQQLLGASQQELAGVQGI 600 Query: 596 SKKIACKIYNHFHK 609 +A +Y H+ Sbjct: 601 GPILAKTVYKVLHE 614 >gi|260893662|ref|YP_003239759.1| excinuclease ABC, C subunit [Ammonifex degensii KC4] gi|260865803|gb|ACX52909.1| excinuclease ABC, C subunit [Ammonifex degensii KC4] Length = 622 Score = 515 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 206/617 (33%), Positives = 325/617 (52%), Gaps = 18/617 (2%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + ++ +P PGVY D G V+YVGKA +L++R+KSY N + ++ ++ ++ N+ F Sbjct: 7 LKAQSLPAEPGVYLFKDERGEVIYVGKAASLRQRVKSYFQGNP-SPKVEAILRRVANLEF 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT EVEAL+LEAN+IK +PR+N++L+DDKS+PYI +T + + P + R + Sbjct: 66 MVTDNEVEALILEANLIKLHRPRYNVVLKDDKSYPYIKVTVEEEYPRVLFARRRDDKRAR 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGP+ AV +T+ L+ F RSC+ V R +RPCL + IKRC GPCTG++ E Y Sbjct: 126 YFGPYTKAGAVYETLRFLRTLFPYRSCSGPVPRPNSRPCLNYHIKRCPGPCTGQVDPEVY 185 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + FL G + ++ R M QA + +E A ++RDRL AL I + + Sbjct: 186 RRNIDSLCLFLEGRYRQVLRQLEREMKQAAEELAFERAAVYRDRLQALKLILERQRVVSS 245 Query: 241 R---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 R +D L ++ A G+ G +F L E + + + + Sbjct: 246 RPEDLDVVGLARQEDRAQAVVLLVREGRLIGQESFPLTIAPEEEQGLLTEFLKQYYGVIA 305 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 + L+ L + G++VKI VP++G K++++E A NA + + L Sbjct: 306 SSFPSELVLPSPPLEEALVDLLRSRAGFEVKIVVPRRGHKKELLELAEKNAWAALNEGLR 365 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + L + LP +P RIE YD SH+ G + V MVV K+ YR+F L Sbjct: 366 EAEAQARSLSSLAEALGLPRVPHRIEGYDASHLQGVAPVAVMVVFVGGKPYKSGYRRFAL 425 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP-KKQEYSFPSWPDVVILDGGKGQL 476 +D +R L RRF + + EE L Q+ F PD++++DGG GQ Sbjct: 426 TQP--GKPNDYQALRETLYRRFMRARQEEEALAEGRITPQQAKFLPLPDLILVDGGAGQA 483 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK--GEALVLNMRDPILYFIQRLR 534 A+ VL++L + I + +AK E + G ++L P L+ +QR+R Sbjct: 484 GVAREVLEELGYD--IPVFGLAKEE------EWIYPPHQAGNPIILPRSSPALHLLQRVR 535 Query: 535 DEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DEAHRFA+ HR+RR+K + S L EI GIGP R+ LL++F T++ ++R+S E LA + Sbjct: 536 DEAHRFALGFHRRRREKESLRSLLSEIEGIGPARRSALLRAFPTLEALARASVEELARVP 595 Query: 594 GISKKIACKIYNHFHKN 610 G+++ A +Y +FH++ Sbjct: 596 GMTRPAAEAVYRYFHRS 612 >gi|237748847|ref|ZP_04579327.1| excinuclease ABC subunit C [Oxalobacter formigenes OXCC13] gi|229380209|gb|EEO30300.1| excinuclease ABC subunit C [Oxalobacter formigenes OXCC13] Length = 632 Score = 515 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 213/621 (34%), Positives = 337/621 (54%), Gaps = 33/621 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +Q+P PGVY+ D ++LYVGKA +L KR+ +Y + + RI M+ +I + T Sbjct: 31 AVKQLPHLPGVYRYFDKNDKLLYVGKARDLIKRVSTYFQKASPSPRIAMMVERIARMETT 90 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT +EVEAL+LE+N+IK L P +NI+ RDDKS+PY+ IT + K P + +R + + Sbjct: 91 VTRSEVEALILESNLIKTLHPHYNIIFRDDKSYPYLKITGQ-KYPRMVYYRGNVDRHNQF 149 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPF + AV +TI LQR F LR+C DSVF++RTRPCLL+QI RCSGPC IS E Y Sbjct: 150 FGPFPNSWAVRETIQILQRVFRLRTCEDSVFKNRTRPCLLYQINRCSGPCVDLISEEGYR 209 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + A +FL G + ++ M + + ++E A R+++A+LS + + Sbjct: 210 KDTENAVRFLRGEQTVILGELQEKMERHAERLEFEEAAFVRNQIASLSQVLQQQSMESDK 269 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT------DSESTNAQILSYFLRQ 292 +D ++ + AC+ G++ G F ++E Q+L FL Q Sbjct: 270 VADVDIIAVVVREGRACVNLAMVRGGRHLGDRAVFPGNLGSGVDENEKLEIQVLKAFLAQ 329 Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 Y D P I+++ + +E +LL ++ +Q G+++ I QG++R +E A NA + Sbjct: 330 HYIDGQIPGTIVVNMDFDEPALL-VALSEQCGHRIHIVTQPQGQRRLWLEMAQKNAEIAL 388 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKR---IEIYDNSHIMGCSAVGCMVVVGENGFVK 409 + L + +K + L IE +D SH G + V+ Sbjct: 389 ARVLLQSDTQLSRVKSLIELMNLDIEDPNDLRIEAFDISHTQGEAVQASCVIFHHCAMQN 448 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 ++YR++N+ + DD A M+ VL RR+ +L+ +E+ + PD+V++ Sbjct: 449 SEYRRYNI--AGITPGDDYAAMKQVLTRRYEKLVGHEDLM--------------PDIVLV 492 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILY 528 DGGKGQ+S A V +L + + I+ +AKG R G+E G L +L Sbjct: 493 DGGKGQVSMATQVFAELGHDLSL-IVGVAKGEGRKVGLETLVYADGRLPQELGKDSKVLM 551 Query: 529 FIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 I ++RDEAHRFAIT R +R KK S L+EI G+G R++ LL FG+V+ I+ +S + Sbjct: 552 LIAQIRDEAHRFAITGMRAKRDKKRQASRLEEIEGVGAKRRQKLLARFGSVRQIADASVD 611 Query: 588 TLASIEGISKKIACKIYNHFH 608 LA++EGIS+++A +IY+ H Sbjct: 612 DLATVEGISRRLAQQIYDQLH 632 >gi|213965651|ref|ZP_03393845.1| excinuclease ABC, C subunit [Corynebacterium amycolatum SK46] gi|213951810|gb|EEB63198.1| excinuclease ABC, C subunit [Corynebacterium amycolatum SK46] Length = 682 Score = 515 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 194/667 (29%), Positives = 305/667 (45%), Gaps = 62/667 (9%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ LD GRVLYVGKA NL+ R+ +Y R M+ + + +TV Sbjct: 13 TIPTEPGVYRFLDSTGRVLYVGKAKNLRARLSNYFQDLTRLHPRTRQMVQSASKVTWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 EVEAL LE IKR PRFN++ RDDKS+P + ++ P L+ +R YFG Sbjct: 73 HNEVEALQLEYTWIKRFNPRFNVMYRDDKSYPMLAVSVGELYPRLFLYRGPRRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F R+C+ VF + RPCLL I +CS PC G +S+E++ Sbjct: 133 PYSHAWAIRETLDLLTRVFPARTCSKGVFNRQQALGRPCLLGYIDKCSAPCVGRVSAEEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E V F+SG + ++ M +A + D+E A RD LAA+ + + + Sbjct: 193 REIVRGFTSFMSGNTGPVTRRLKNEMEEAAAELDFERAASLRDNLAAIDKVMERQSVVLS 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILS---------- 287 D +L ++ A +Q G+ G + ++ E + Sbjct: 253 DAADADFIALATDELEAAVQIFHVRAGRIYGQRGWVVEKSGEYATTEFQEGETDPSLGGL 312 Query: 288 --YFLRQFYTDKP----------------CPENILLSEEAEETSLLEISFFKQYGYKVKI 329 FL QFY D P IL+ ++ + G V I Sbjct: 313 LTQFLTQFYGDAAKHADVDGDESTTAAQVVPREILVQATPDDLDEVAAFLADIRGTNVDI 372 Query: 330 TVPKQGEKRKIIEQALINAHRSHTQKLSTE----ISHQMILKDFTKKFALPHIPKRIEIY 385 VP++G+KR ++E NA + Q + L + + P RIE Sbjct: 373 RVPQRGDKRTLMETVQKNAAEALRQHKLKRSGDLTTRSQALSELQDALFMDEAPLRIECT 432 Query: 386 DNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQ--- 441 D SHI G V +VV + K+ YR++ + + DD + V+ RRF + Sbjct: 433 DISHIQGTDVVASLVVFEDGLPKKSDYRRYRIKDAAGDGRSDDVGSIAEVVRRRFLRHNE 492 Query: 442 ------------LIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE 489 ++ + + F P + I+DGG Q++AAQ VL +L V Sbjct: 493 DKLAMPDDASEMFVEETTDAVDEQSRSSRKFAYPPQLFIVDGGAPQVAAAQAVLDELEVT 552 Query: 490 NRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR 549 + +T++ IAK + E + E L+L +Y IQR+RDEAHRFAI HR++R Sbjct: 553 D-VTLVGIAKRLE-----ELWIPDDDEPLILPRNSEAMYLIQRIRDEAHRFAINYHRQQR 606 Query: 550 KKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 K S LD I G+GP R+ L++ FG+V + ++S E + + G +A ++++ H Sbjct: 607 SKRMRSSVLDGIKGLGPARRSELVKHFGSVAALKKASVEQIEEVAGFGPMLAKTVHDYLH 666 Query: 609 KNTSHTP 615 + + Sbjct: 667 PDEKSSE 673 >gi|68248608|ref|YP_247720.1| excinuclease ABC subunit C [Haemophilus influenzae 86-028NP] gi|81336965|sp|Q4QPI7|UVRC_HAEI8 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|68056807|gb|AAX87060.1| UvrABC system protein C [Haemophilus influenzae 86-028NP] Length = 609 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 209/616 (33%), Positives = 336/616 (54%), Gaps = 32/616 (5%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 PGVY+M D +V+YVGKA +L+KR+ SY N + + +++ I++I +T +E Sbjct: 13 HEPGVYRMYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVASIHHIDTMLTSSET 72 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EALLLE N IK +PR+N+LLRDDKS+P+IL+T K + P + +R S G YFGP+ Sbjct: 73 EALLLEHNFIKLYQPRYNVLLRDDKSYPFILLT-KERHPRITSYRGSKKFAGEYFGPYPH 131 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHE 186 AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCS PC +S E+Y + V Sbjct: 132 AGAVRETLSLLQKLFPVRQCENSVYSNRSRPCLQYQIGRCSAPCVQGYVSDEEYNQQVEL 191 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMD 243 A+ FL G + + + + M QA+ D+E A +RD++ A+ + + MD Sbjct: 192 ARLFLQGKDQQVLDYLIGKMEQASRNLDFEQAARYRDQIQAVRSVIEKQFVSNERLDDMD 251 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPC 299 S+ + LAC+Q F G+ G ++F K + + +++ F+ QFY + Sbjct: 252 IMSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTETFVGQFYLQGHQGRSI 311 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P +I++ + E S LE +Q G KV I +G+K K ++ A +NA + +L Sbjct: 312 PNSIIVDRQLAEKSELEQLLTEQAGRKVTIQESVKGDKSKYLQLAQVNAKAALNVQLKQS 371 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + LP I R+E +D SH MG V VV + G +K+ YR+FN+ Sbjct: 372 SRMSERYQALCDLLNLPEIK-RMECFDISHTMGNQTVASCVVFNQEGPLKSDYRRFNIEG 430 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A M L++R+ + ++ ++ PD++ +DGGKGQL+ A Sbjct: 431 --ITGGDDYAAMEQALQKRYERDLEEDK---------------IPDIIFIDGGKGQLNRA 473 Query: 480 QGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535 V + L V +NR +I +AKG R AG E + K+ + L L+ IQ +RD Sbjct: 474 LNVFQHLQVKWDKNRPHLIGVAKGVDRRAGQEVLIISKQDREIHLPDDSLALHLIQHIRD 533 Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E+H AI+ HRK+R+KA S L+ I G+G R++ LL+ G ++ + +++ + +AS+ G Sbjct: 534 ESHNHAISGHRKKRQKAFTQSGLETIEGVGAKRRQALLKYLGGLQGVKKATLDEIASVPG 593 Query: 595 ISKKIACKIYNHFHKN 610 IS K+A I+ + Sbjct: 594 ISLKLAETIFETLKND 609 >gi|291539853|emb|CBL12964.1| excinuclease ABC, C subunit [Roseburia intestinalis XB6B4] Length = 626 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 195/625 (31%), Positives = 328/625 (52%), Gaps = 21/625 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRF 60 +++P+ PGVY M D ++Y+GKA +L+KR+ Y ++ + M+ QI + Sbjct: 7 ELKKLPDQPGVYIMHDSHDAIIYIGKAVSLRKRVHQYFQPSHDEGIKKAQMVKQIARFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE N+IK P++N +LRDDK++PYI +T P + R + Sbjct: 67 IITDSELEALVLECNLIKEHCPKYNTMLRDDKTYPYIRVTVGEDFPRVLFSRQQKKDKSR 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV+ TI + + + LR+C + R + RPCL + I +C PC G IS E Sbjct: 127 YFGPYTSAGAVKDTIELINKLYQLRTCNRVLPRDTGKERPCLNYHIHQCQAPCQGYISRE 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y E + A +FL+G + + + MN+A+ ++E AI +R+ L ++ I Sbjct: 187 EYRERIDAAVEFLNGNYAPILKSLEEKMNEASENLEFEKAIEYRELLGSVRQIAQKQKIT 246 Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D +L + A +Q F G+ G F+++ +E T +QIL+ FL+QFY+ Sbjct: 247 HTDGEDKDIIALASDDRDAVVQVFFIRDGKLIGRDHFYVRVGTEDTKSQILTTFLKQFYS 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350 P P I+L EE E+ +L ++ G +V I VP++G K K++E A NA + Sbjct: 307 GTPFIPREIMLPEEIEDHEVLAEWLTEKRGARVYIRVPQKGMKEKLVELAQKNAELVLSQ 366 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E +K+ + + R+E +D S+I G VG M+V + ++ Sbjct: 367 DREKIKREEGRTIGAMKEIEHLLGMEGLS-RVEAFDISNINGFETVGSMIVYEKGKPKRS 425 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE-YSFPSWPDVVIL 469 YRKF L + DD A M VL RRF+ ++ ++ L +E SF +PD++++ Sbjct: 426 DYRKFKLKT--ITGPDDYASMHEVLTRRFTHGMQEKKELAEREMSEEYGSFTRFPDLIMM 483 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGG+GQ++ A VL +L + I + + K + + + ++ Sbjct: 484 DGGRGQVNIALKVLDELKI--NIPVCGMVKDDNHRTRG---LYYQNKEIPIDRTSEGFKL 538 Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 I R++DEAHRFAI HR R K +S LD+I GIGP R++ L++ F +++ I +S E Sbjct: 539 ITRIQDEAHRFAIEYHRSLRSKEQVHSVLDDIPGIGPARRKALMRRFQSLEAIREASEEE 598 Query: 589 LASIEGISKKIACKIYNHFHKNTSH 613 LA E ++++ A +Y+ ++ Sbjct: 599 LAKTESMNEQAARAVYSFLREDKHG 623 >gi|319426044|gb|ADV54118.1| excinuclease ABC, C subunit [Shewanella putrefaciens 200] Length = 609 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 197/611 (32%), Positives = 325/611 (53%), Gaps = 28/611 (4%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 GVY+M D+ G V+YVGKA +L+KR+ SY N + ++S I++I T+T +E Sbjct: 16 SSAGVYRMYDVKGDVIYVGKAKDLKKRLSSYFRKNLDNVKTQALVSHIHHIDVTLTHSET 75 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 +ALLLE + IK+ P++N+LLRDDKS+PYIL++ +H+ P L HR +G YFGP+ + Sbjct: 76 DALLLENDYIKQYMPKYNVLLRDDKSYPYILLS-QHEHPRLAYHRGPQREKGHYFGPYPN 134 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 AV ++++ +Q+ F +R C D ++ R+RPCL +Q+ RCS PC G++S+ Y E V A Sbjct: 135 GGAVRESLHLMQKLFPIRQCDDLYYKSRSRPCLQYQLSRCSAPCVGKVSNADYDEQVKLA 194 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCF 245 FL G + + + M QA +++YE A RD++ AL + + N MD Sbjct: 195 SLFLKGKDQQVISTLVAKMEQAAQQQEYEQAARFRDQIMALRKVAEQQEVSNNKGDMDVI 254 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPE 301 +++ +AC F G+ G+ +++ +++ ++L F+ QFY + + P+ Sbjct: 255 GVHYASGIACFHLLFIREGKIFGSRSYYPSVPAQTDMDEVLRSFILQFYLNADIQRTIPK 314 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 +++S EE LE + K I + ++ + A+ NA + +LS + + Sbjct: 315 EVVISHNFEELHELEAAVSIALNKKFSIKTNVRADRASFLRLAVTNATNAVITRLSHKNT 374 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 + + L R+E +D SH MG S V VV G K +YR++N+ Sbjct: 375 VEQRFVLLEEILELSTPIHRMECFDISHTMGESTVASCVVFNREGPHKGEYRRYNIEG-- 432 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 + DD A M+ + RRF ++ + PD++ +DGG GQL AQ Sbjct: 433 ITPGDDYAAMKQAITRRFDKIEAGGK---------------IPDILFIDGGLGQLRIAQK 477 Query: 482 VLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAH 538 ++ + ++++ +I +AKG R G+E + E + L P L+ IQ +RDE+H Sbjct: 478 IVDEKFVHLDKAPQLIGVAKGEGRKPGLETLILGDTETSFSLEGDSPALHLIQHIRDESH 537 Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR RR+K S L+ I GIGP R++ LLQ G ++ + +S L + GIS Sbjct: 538 RFAITGHRNRRQKTRNTSTLESIPGIGPKRRKALLQHLGGLQEVKGASVAELVKVPGISI 597 Query: 598 KIACKIYNHFH 608 ++A I++ Sbjct: 598 EMAQTIHDALR 608 >gi|295395307|ref|ZP_06805511.1| excision endonuclease subunit UvrC [Brevibacterium mcbrellneri ATCC 49030] gi|294971858|gb|EFG47729.1| excision endonuclease subunit UvrC [Brevibacterium mcbrellneri ATCC 49030] Length = 637 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 207/633 (32%), Positives = 326/633 (51%), Gaps = 33/633 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 + ++P PGVY D GRV+YVGKA NL+ R+ SY R M+ +++ + Sbjct: 9 KTGEIPTDPGVYTFRDADGRVIYVGKAKNLRNRLNSYFADPAGLHPRTFTMVHTASSVNW 68 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TEVEAL LE I PRFN++ RDDKS+PY+ IT + + P ++ R Sbjct: 69 TVVKTEVEALQLEWTWINEFNPRFNVMFRDDKSYPYLAITVRDEYPRVFVTRGKRKKGMK 128 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISS 177 YFGPF +V A+ ++++ L + F +R+CA +VF + + RPCLL I +CS PC G+I Sbjct: 129 YFGPFTAVWAIRESLDLLLKAFPVRTCAKTVFDRAQRQGRPCLLGYIDKCSAPCVGKIEK 188 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 ++Y E V +F+SG + + M +A+ D+E A RD + AL + N N Sbjct: 189 DEYAELVKSVIEFMSGNSGKFISVRKQAMKEASANLDFEEAARLRDEITALETVLNKNAV 248 Query: 238 IYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + ++ D F LY + A +Q G+ RG + ++ + T +++ +RQ Y Sbjct: 249 VLSQNADADVFGLYAEELEASVQVFHIRGGRIRGQRGWIIERMEDKTPGELIEDAIRQAY 308 Query: 295 TD---KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 TD P IL S E + LL G K+ + VP++GEK+ ++E A +NAH++ Sbjct: 309 TDVDTHAIPTEILTSHEPADKELLGEWLRSVRGAKIDMRVPQRGEKKAVLETAELNAHKA 368 Query: 352 HTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 + S L + + L P RIE DNSH G + VG +VV + Sbjct: 369 LALHKTRRASDLTTRSQALNEIHEALDLTEPPLRIECIDNSHTAGQNVVGSLVVFEDGLP 428 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 K Y++F++ + +DD + M V+ RRF + ++N K + F P ++ Sbjct: 429 KKKDYKRFSVTGD--AARDDTSAMYNVVSRRFERYLEN-------MGKDDTGFGYRPSLL 479 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPIL 527 ++DG Q+ AA L L + + IT++ +AK + E + ++L L Sbjct: 480 VVDGALPQVHAATQALHDLGIPD-ITVVGLAKRLE-----EVWVPWDEFPVILPRNSEGL 533 Query: 528 YFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586 + +QR+RDEAHRFAIT HR++R S LD I+G+G +++ LL+ FG+VK I +S Sbjct: 534 FMLQRIRDEAHRFAITYHRQKRSASMTRSELDAIDGLGAAKQKALLKHFGSVKKIKAASV 593 Query: 587 ETLASIEGISKKIACKIYNHF---HKNTSHTPT 616 E L GI ++A KI+ HF + + T Sbjct: 594 EELMQARGIGPQLADKIHGHFTQAQPDEENAGT 626 >gi|120599189|ref|YP_963763.1| excinuclease ABC subunit C [Shewanella sp. W3-18-1] gi|189038097|sp|A1RKL4|UVRC_SHESW RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|120559282|gb|ABM25209.1| Excinuclease ABC subunit C [Shewanella sp. W3-18-1] Length = 609 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 197/611 (32%), Positives = 325/611 (53%), Gaps = 28/611 (4%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 GVY+M D+ G V+YVGKA +L+KR+ SY N + ++S I++I T+T +E Sbjct: 16 SSAGVYRMYDVKGDVIYVGKAKDLKKRLSSYFRKNLDNVKTQALVSHIHHIDVTLTHSET 75 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 +ALLLE + IK+ P++N+LLRDDKS+PYIL++ +H+ P L HR +G YFGP+ + Sbjct: 76 DALLLENDYIKQYMPKYNVLLRDDKSYPYILLS-QHEHPRLAYHRGPQREKGHYFGPYPN 134 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 AV ++++ +Q+ F +R C D ++ R+RPCL +Q+ RCS PC G++S+ Y E V A Sbjct: 135 GGAVRESLHLMQKLFPIRQCDDLYYKSRSRPCLQYQLSRCSAPCVGKVSNADYDEQVKLA 194 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCF 245 FL G + + + M QA +++YE A RD++ AL + + N MD Sbjct: 195 SLFLKGKDQQVISTLVAKMEQAAQQQEYEQAARFRDQIMALRKVAEQQEVSNNKGDMDVI 254 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPE 301 +++ +AC F G+ G+ +++ +++ ++L F+ QFY + + P+ Sbjct: 255 GVHYASGIACFHLLFIREGKIFGSRSYYPSVPAQTDMDEVLRSFILQFYLNADIQRTIPK 314 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 +++S EE LE + K I + ++ + A+ NA + +LS + + Sbjct: 315 EVVISHNFEELHELEAAVSIALNKKFSIKTNVRADRASFLRLAVTNATNAVITRLSHKNT 374 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 + + L R+E +D SH MG S V VV G K +YR++N+ Sbjct: 375 VEQRFVLLEEILELSTPIYRMECFDISHTMGESTVASCVVFNREGPHKGEYRRYNIEG-- 432 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 + DD A M+ + RRF ++ + PD++ +DGG GQL AQ Sbjct: 433 ITPGDDYAAMKQAITRRFDKIEAGGK---------------IPDILFIDGGLGQLRIAQK 477 Query: 482 VLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAH 538 ++ + ++++ +I +AKG R G+E + E + L P L+ IQ +RDE+H Sbjct: 478 IVDEKFVHLDKAPQLIGVAKGEGRKPGLETLILGDTETSFSLEGDSPALHLIQHIRDESH 537 Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR RR+K S L+ I GIGP R++ LLQ G ++ + +S L + GIS Sbjct: 538 RFAITGHRNRRQKTRNTSTLESIPGIGPKRRKALLQHLGGLQEVKGASVAELVKVPGISI 597 Query: 598 KIACKIYNHFH 608 ++A I++ Sbjct: 598 EMAQTIHDALR 608 >gi|260439219|ref|ZP_05793035.1| excinuclease ABC subunit C [Butyrivibrio crossotus DSM 2876] gi|292808234|gb|EFF67439.1| excinuclease ABC subunit C [Butyrivibrio crossotus DSM 2876] Length = 614 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 196/625 (31%), Positives = 325/625 (52%), Gaps = 33/625 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P+ PGVY M D ++YVGKA +L+ R++ Y S+ NHT++I M+S I + Sbjct: 11 ELKKLPDKPGVYIMHDEKDEIIYVGKAISLKNRVRQYFQSSRNHTNKIKQMVSNIRRFEY 70 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE N+IK +PR+N +L+DDK++P+I IT P + R+ + Sbjct: 71 IITDSELEALVLECNLIKLHRPRYNTMLKDDKTYPFIKITVNEPFPRIISSREMKRDKAR 130 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGPF S AV TI L +T+ +R+C ++ + + RPCL + I +C+ PC G IS E Sbjct: 131 YFGPFTSGKAVNDTIELLNKTYGIRTCRRNLPKDTGKERPCLNYHIGQCTAPCQGYISQE 190 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y + + + FL G + + K+ M +A+ K ++E A +R+ L ++ + Sbjct: 191 DYGKLIDQCIDFLEGRYNGITRKLTGLMYEASEKMEFEQAAAYRNMLESVKFVSQKQKIT 250 Query: 239 YNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + M D + + +Q F G+ G + ++ + ++I++ F++Q+Y Sbjct: 251 NSDMQDRDIVAASIDYKDCVVQVFFIRNGKMIGREHYHMRLAGDEKRSEIITDFIKQYYA 310 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HR 350 P P I+L E + L+ ++ G+ VK VPK+G+K K++E A NA ++ Sbjct: 311 GTPYIPPEIMLQENLIDEELIGRWLTERAGHNVKFLVPKRGQKEKLVELAEKNANMVLNQ 370 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + L E +K+ + L H R+E +D S+I G VG MVV + KN Sbjct: 371 DREKILKEEARTTGAVKEIERLTGL-HDIHRMEAFDISNISGAQPVGSMVVFTDGRPRKN 429 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YRKF + V DD + MR VL RR + + + SF PD++++D Sbjct: 430 DYRKFRIKT--VTGPDDYSSMREVLTRRLTH-------------ESDSSFDIKPDLIMMD 474 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ++ A VL LN+ I + + K G+ + +N I Sbjct: 475 GGKGQVNIALEVLNDLNIS--IPVCGMVKDDNHRTRA---LWYNGKEVEINTGSEAFKLI 529 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DEAHRFAI HR R + S LD+I+GIGP+R++ L++ F + +I ++S E L Sbjct: 530 TRIQDEAHRFAIEFHRNLRSREQVKSILDDIDGIGPVRRKALMKHFKDIDVIKKASVEEL 589 Query: 590 ASIEGISKKIACKIYNHFHKNTSHT 614 + ++ A K++ F+K T Sbjct: 590 CDVPSMNLAAAEKVHEFFNKQERGT 614 >gi|269795310|ref|YP_003314765.1| excinuclease ABC subunit C [Sanguibacter keddieii DSM 10542] gi|269097495|gb|ACZ21931.1| Excinuclease ABC subunit C [Sanguibacter keddieii DSM 10542] Length = 703 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 195/653 (29%), Positives = 310/653 (47%), Gaps = 47/653 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 ++P PGVY+ D GRV+YVGKA NL+ R+ SY R M++ +++ +TV Sbjct: 13 EIPTTPGVYRFRDDHGRVIYVGKAKNLRARLSSYFQDLAALHPRTQTMVTTASSVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE + IK PRFN+ RDDKS+PY+ +T +P R S + YFG Sbjct: 73 GTEVEALALEYSWIKEYDPRFNVKYRDDKSYPYLAVTMGESVPRAQVMRGSKRVGTRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180 PFA A+ +T++ L R F +R+C+ V++ RPCLL I +C+ PC IS + + Sbjct: 133 PFAHAWAIRETLDLLLRVFPIRTCSAGVYKRAQQSGRPCLLGYIDKCAAPCVERISKDAH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + F++G ++ M+ A DYE A RD + AL N + Sbjct: 193 RALADDFCAFMAGDTAKFMRRLRDEMSMAAQNLDYERAARLRDDIGALERAMEKNAVVLQ 252 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D F+L ++ A +Q G+ RG + ++ + T+A+++ + L+Q Y Sbjct: 253 DGTDADIFALTGDELEAAVQVFHVRGGRIRGQRGWVVEKVEDLTDAELVEHLLQQVYGTA 312 Query: 298 P---------------CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIE 342 P +L+ + G +V I VP++G+KR++ Sbjct: 313 DEAAGGDAQAARDSGLVPREVLVPVLPAHLEQMTTWLSGLRGARVDIRVPQRGDKRELAA 372 Query: 343 QALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGC 398 L NA + + + + L++ + L P RIE YD S MG Sbjct: 373 TVLKNAEHALALHRTRRAGDLTNRSLALREIQEALDLDSAPLRIECYDISTTMGTHQAAS 432 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKNE----------- 446 MVV + K++YR F + D +DD A M V+ RRF + + Sbjct: 433 MVVFEDGLARKSEYRTFGVKGPDGDGARDDTAAMYEVITRRFRRYLAERSDSSDIELETF 492 Query: 447 --ENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRS 504 E P F P++V++DGG Q++AA L L +++ + + +AK + Sbjct: 493 GGEVDAETPATDRKRFAYPPNLVVVDGGPPQVAAAAKALADLGIDD-VALCGLAKRLE-- 549 Query: 505 AGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGI 563 E + + ++L LY +QR+RDEAHRFAIT HRK+R K S LD + G+ Sbjct: 550 ---EVWVPGEEYPVILQRSSEGLYLLQRVRDEAHRFAITAHRKKRGKGMTVSELDSVPGL 606 Query: 564 GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616 GP RK LL+ FG++K + +S E +A+++G+ ++ A + H + T Sbjct: 607 GPARKGALLRHFGSLKRLRAASAEEIATVQGMGQRTAEAVVAALHPAGAPDAT 659 >gi|219871019|ref|YP_002475394.1| excinuclease ABC subunit C [Haemophilus parasuis SH0165] gi|219691223|gb|ACL32446.1| excinuclease ABC subunit C [Haemophilus parasuis SH0165] Length = 615 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 214/615 (34%), Positives = 334/615 (54%), Gaps = 32/615 (5%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 P PGVY+M D G ++YVGKA +L+KR+ SY SN + + ++SQI +I T+T +E Sbjct: 17 PHNPGVYRMYDDKGTIIYVGKAKDLKKRLSSYFRSNLASRKTEALVSQIAHIDTTITHSE 76 Query: 67 VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126 EALLLE N IK +P++N+LLRDDKS+PYIL+T +H+ P L R S I G YFGP+ Sbjct: 77 TEALLLEHNYIKENQPKYNVLLRDDKSYPYILLT-QHQHPRLASFRGSKKIAGEYFGPYP 135 Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVH 185 + AV +T+N LQ+ F +R C DS +++R+RPCL +QI RC PC S +Y + V Sbjct: 136 NAGAVRETLNLLQKLFPIRQCEDSYYKNRSRPCLQYQIGRCLAPCVEGVYSQREYDQQVE 195 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRM 242 + FL G + + E + M +A D+E+A RD++ + + + + Sbjct: 196 YVRLFLQGKDQQVIEHLIGKMEKAAEDLDFEAAARFRDQIQQMRVVTEKQFVSNERLDDL 255 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKP 298 D S+ + +AC+ F G+ G+ ++F K + + A++ F+ QFY + Sbjct: 256 DIISIAYQHGIACVHILFVRQGKMLGSRSYFPKVPNHTEFAELSDTFIGQFYLQMNQHRT 315 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P I++ E LE +Q G+KV IT +GEK + + A NA + T +L Sbjct: 316 IPHQIIIDHSVSEVDALEKVLSEQAGHKVSITDKVRGEKSRYLALAKTNAMAALTLQLKQ 375 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + Q + +LP I R+E +D SH MG V VV ENG +K+ YR+FN+ Sbjct: 376 DARIQTRYEALQAVLSLPKIA-RMECFDISHTMGEQTVASCVVFDENGPLKSDYRRFNIE 434 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + DD A M L +R+ + + E+ PD++ +DGGKGQL+ Sbjct: 435 G--ITGGDDYAAMEQALLKRYDKPLPPEK---------------IPDIIFIDGGKGQLNR 477 Query: 479 AQGVLKKLNVE---NRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLR 534 A L VE ++ +I +AKG +R AG+E + K + + L P L+ IQ +R Sbjct: 478 ALDTFANLKVEWDKSKPLLIGVAKGVERKAGLETLLISKWDKEIHLPPDSPALHLIQHIR 537 Query: 535 DEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE+H AI+ HRK+R+KA S L+ I G+G R+ LLL+ G ++ + ++ + + S+ Sbjct: 538 DESHNHAISGHRKKRQKAFTESGLEAIAGVGAKRRHLLLKYLGGMQGVKSATLDEIKSVP 597 Query: 594 GISKKIACKIYNHFH 608 GIS +A I++ + Sbjct: 598 GISVSLAEIIFDTLN 612 >gi|254361941|ref|ZP_04978072.1| exinuclease UvrC [Mannheimia haemolytica PHL213] gi|153093488|gb|EDN74468.1| exinuclease UvrC [Mannheimia haemolytica PHL213] Length = 612 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 209/620 (33%), Positives = 336/620 (54%), Gaps = 33/620 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+M D G ++YVGKA +L+KR+ SY S + + +++ + NI T+T Sbjct: 12 NVPHQPGVYRMYDSKGTIIYVGKAKDLKKRLASYFRSQLSSKKTEALVANLANIETTITH 71 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N IK +P++N+LLRDDKS+PYIL+T KHK P L R S I G YFGP Sbjct: 72 SETEALLLEHNYIKENQPKYNVLLRDDKSYPYILLT-KHKHPRLTAFRGSKKIAGEYFGP 130 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183 + +V AV +T+N LQ+ F +R C D+ +++R+RPCL +QI RC PC S +Y + Sbjct: 131 YPNVTAVRETLNLLQKIFPIRQCEDTYYKNRSRPCLQYQIGRCLAPCVEGCYSPVEYDQQ 190 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240 V+ + FL G +H + E + + M A D+E A RD++ ++ +Q + Sbjct: 191 VNLVRLFLQGKDHQVVEHLVQKMEDAAEALDFEGAARFRDQIQSVRAVQEKQFVSNDRLD 250 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296 +D S+ + +AC+ F G+ G ++F K S + ++ F+ QFY Sbjct: 251 DLDIISIVYQNGIACVHILFVRQGKVLGNRSYFPKVPSNTDLTELADTFVGQFYLQMNQH 310 Query: 297 KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P I++ + E +L EI + + +G+K++ + A NA + + Sbjct: 311 RTIPNQIVIDHQLSESKALSEILSEQAGHKVSILDNAIRGDKQRYLALARTNAMAALVLQ 370 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L E Q + + + I R+E +D SH MG V VV ENG +K+ YR+F Sbjct: 371 LKQESHIQSRYQALKEMLKMSEIK-RMECFDISHTMGNQTVASCVVFDENGPLKSDYRRF 429 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M L +R+++ + E+ PD++ +DGGKGQ Sbjct: 430 NIEG--ITGGDDYAAMEQALLKRYNRELPPEK---------------IPDIIFIDGGKGQ 472 Query: 476 LSAAQGVLKKLNVE---NRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQ 531 L+ A V KL+VE ++ +I +AKG +R AG+E + K + + L L+ IQ Sbjct: 473 LNRALDVFAKLDVEWDKSKPLLIGVAKGVERKAGLETLIISKWDKEIHLPPDSLALHLIQ 532 Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H+ AI+ HRK+R+KA S L+ I G+G R++ LL+ G ++ + ++ E + Sbjct: 533 HIRDESHQHAISGHRKKRQKAFTESGLESIAGVGAKRRQALLKYLGGMQGVKSATLEEIQ 592 Query: 591 SIEGISKKIACKIYNHFHKN 610 S+ GISK +A I++ + Sbjct: 593 SVPGISKALAEVIFDTLKNS 612 >gi|325578727|ref|ZP_08148774.1| excinuclease ABC subunit C [Haemophilus parainfluenzae ATCC 33392] gi|325159551|gb|EGC71683.1| excinuclease ABC subunit C [Haemophilus parainfluenzae ATCC 33392] Length = 608 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 208/614 (33%), Positives = 338/614 (55%), Gaps = 32/614 (5%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 PGVY+M D +V+YVGKA +L+KR+ SY N + + ++S I++I T+T +E Sbjct: 13 HEPGVYRMYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVSSIHHIDTTITSSET 72 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EALLLE N IK +PR+N+LLRDDKS+P+IL+T K + P + +R + I G YFGP+ Sbjct: 73 EALLLEHNFIKLYQPRYNVLLRDDKSYPFILLT-KERHPRITSYRGTKKIAGEYFGPYPH 131 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHE 186 AV +T++ +Q+ F +R C +SV+ +R+RPCL +QI RC PC ++ E+Y + V Sbjct: 132 AGAVRETLSLMQKLFPVRQCENSVYNNRSRPCLQYQIGRCCAPCVPGYVTDEEYNQQVEL 191 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMD 243 A+ FL G + + + + M QA+ D+E A +RD++ A+ + + MD Sbjct: 192 ARLFLQGKDQQVLDYLIGKMEQASRDLDFEGAARYRDQIQAVRAVIEKQFVSNERLDDMD 251 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPC 299 S+ + LAC+Q F G+ G ++F K + + +++ + F+ QFY + Sbjct: 252 IMSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTATFVGQFYLQGHQGRSI 311 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P +I++ + +E + LE +Q G KV I +G+K K ++ A INA + +L Sbjct: 312 PNSIIVDHKLDEKTELEALLTEQAGRKVVIQESAKGDKGKYLQLAQINAKAALATQLKQS 371 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + + +P I R+E +D SH MG V VV + G +K+ YR+FN+ Sbjct: 372 SRMHERYQALCELLDMPEIK-RMECFDISHTMGNQTVASCVVFNQEGPLKSDYRRFNIEG 430 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A M L++R+ + + ++ PD++ +DGGKGQL+ A Sbjct: 431 --ITGGDDYAAMEQALKKRYDRDLDEDK---------------IPDIIFIDGGKGQLNRA 473 Query: 480 QGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535 V LNV +NR +I +AKG R AG E + K+ + L L+ IQ +RD Sbjct: 474 LEVFHHLNVKWDKNRPHLIGVAKGVDRRAGQEVLIISKQDREIHLPDDSLALHLIQHIRD 533 Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E+H AI+ HR++R+KA S L+ I G+G R++ LL+ G ++ + ++ + +AS+ G Sbjct: 534 ESHNHAISGHRQKRQKAFTQSGLETIEGVGAKRRQALLKYLGGLQGVKNATLDEIASVPG 593 Query: 595 ISKKIACKIYNHFH 608 ISK +A KI+ Sbjct: 594 ISKALAEKIFETLK 607 >gi|261493656|ref|ZP_05990175.1| exinuclease UvrC [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261310656|gb|EEY11840.1| exinuclease UvrC [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 612 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 209/620 (33%), Positives = 336/620 (54%), Gaps = 33/620 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+M D G ++YVGKA +L+KR+ SY S + + +++ + NI T+T Sbjct: 12 NVPHQPGVYRMYDSKGTIIYVGKAKDLKKRLASYFRSQLSSKKTEALVANLANIETTITH 71 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N IK +P++N+LLRDDKS+PYIL+T KHK P L R S I G YFGP Sbjct: 72 SETEALLLEHNYIKENQPKYNVLLRDDKSYPYILLT-KHKHPRLTAFRGSKKIAGEYFGP 130 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183 + +V AV +T+N LQ+ F +R C D+ +++R+RPCL +QI RC PC S +Y + Sbjct: 131 YPNVTAVRETLNLLQKIFPIRQCEDTYYKNRSRPCLQYQIGRCLAPCVEGCYSPVEYDQQ 190 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240 V+ + FL G +H + E + + M A D+E A RD++ ++ +Q + Sbjct: 191 VNLVRLFLQGKDHQVVEHLVQKMEDAAEALDFEGAARFRDQIQSVRAVQEKQFVSNDRLD 250 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296 +D S+ + +AC+ F G+ G ++F K S + ++ F+ QFY Sbjct: 251 DLDIISIVYQNGIACVHILFVRQGKVLGNRSYFPKVPSNTDLTELADTFVGQFYLQMNQH 310 Query: 297 KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P I++ + E +L EI + + +G+K++ + A NA + + Sbjct: 311 RTIPNQIVIDHQLSESKALSEILSEQAGHKVSILDNAIRGDKQRYLALARTNAMAALALQ 370 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L E Q + + + I R+E +D SH MG V VV ENG +K+ YR+F Sbjct: 371 LKQESHIQSRYQALKEMLKMSEIK-RMECFDISHTMGNQTVASCVVFDENGPLKSDYRRF 429 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M L +R+++ + E+ PD++ +DGGKGQ Sbjct: 430 NIEG--ITGGDDYAAMEQALLKRYNRELPPEK---------------IPDIIFIDGGKGQ 472 Query: 476 LSAAQGVLKKLNVE---NRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQ 531 L+ A V KL+VE ++ +I +AKG +R AG+E + K + + L L+ IQ Sbjct: 473 LNRALDVFAKLDVEWDKSKPLLIGVAKGVERKAGLETLIISKWDKEIHLPPDSLALHLIQ 532 Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H+ AI+ HRK+R+KA S L+ I G+G R++ LL+ G ++ + ++ E + Sbjct: 533 HIRDESHQHAISGHRKKRQKAFTESGLESIAGVGAKRRQALLKYLGGMQGVKSATLEEIQ 592 Query: 591 SIEGISKKIACKIYNHFHKN 610 S+ GISK +A I++ + Sbjct: 593 SVPGISKALAEVIFDTLKNS 612 >gi|261494323|ref|ZP_05990817.1| exinuclease UvrC [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309972|gb|EEY11181.1| exinuclease UvrC [Mannheimia haemolytica serotype A2 str. OVINE] Length = 612 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 209/620 (33%), Positives = 336/620 (54%), Gaps = 33/620 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+M D G ++YVGKA +L+KR+ SY S + + +++ + NI T+T Sbjct: 12 NVPHQPGVYRMYDSKGTIIYVGKAKDLKKRLASYFRSQLSSKKTEALVANLANIETTITH 71 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N IK +P++N+LLRDDKS+PYIL+T KHK P L R S I G YFGP Sbjct: 72 SETEALLLEHNYIKENQPKYNVLLRDDKSYPYILLT-KHKHPRLTAFRGSKKIAGEYFGP 130 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183 + +V AV +T+N LQ+ F +R C D+ +++R+RPCL +QI RC PC S +Y + Sbjct: 131 YPNVTAVRETLNLLQKIFPIRQCEDTYYKNRSRPCLQYQIGRCLAPCVEGCYSPVEYDQQ 190 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240 V+ + FL G +H + E + + M A D+E A RD++ ++ +Q + Sbjct: 191 VNLVRLFLQGKDHQVVEHLVQKMEDAAEALDFEVAARFRDQIQSVRAVQEKQFVSNDRLD 250 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296 +D S+ + +AC+ F G+ G ++F K S + ++ F+ QFY Sbjct: 251 DLDIISIVYQNGIACVHILFVRQGKVLGNRSYFPKVPSNTDLTELADTFVGQFYLQMNQH 310 Query: 297 KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P I++ + E +L EI + + +G+K++ + A NA + + Sbjct: 311 RTIPNQIVIDHQLSESKALSEILSEQAGHKVSILDNAIRGDKQRYLALARTNAMAALALQ 370 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L E Q + + + I R+E +D SH MG V VV ENG +K+ YR+F Sbjct: 371 LKQESHIQSRYQALKEMLKMSEIK-RMECFDISHTMGNQTVASCVVFDENGPLKSDYRRF 429 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M L +R+++ + E+ PD++ +DGGKGQ Sbjct: 430 NIEG--ITGGDDYAAMEQALLKRYNRELPPEK---------------IPDIIFIDGGKGQ 472 Query: 476 LSAAQGVLKKLNVE---NRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQ 531 L+ A V KL+VE ++ +I +AKG +R AG+E + K + + L L+ IQ Sbjct: 473 LNRALDVFTKLDVEWDKSKPLLIGVAKGVERKAGLETLIISKWDKEIHLPPDSLALHLIQ 532 Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H+ AI+ HRK+R+KA S L+ I G+G R++ LL+ G ++ + ++ E + Sbjct: 533 HIRDESHQHAISGHRKKRQKAFTESGLESIAGVGAKRRQALLKYLGGMQGVKSATLEEIQ 592 Query: 591 SIEGISKKIACKIYNHFHKN 610 S+ GISK +A I++ + Sbjct: 593 SVPGISKALAEVIFDTLKNS 612 >gi|270308386|ref|YP_003330444.1| excinuclease ABC, C subunit [Dehalococcoides sp. VS] gi|270154278|gb|ACZ62116.1| excinuclease ABC, C subunit [Dehalococcoides sp. VS] Length = 607 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 212/613 (34%), Positives = 330/613 (53%), Gaps = 27/613 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +PE PGVY M + G ++YVGKA L+ R+KSY + + ++SQIN + + +T Sbjct: 12 SLPENPGVYLMKNAQGEIIYVGKAAVLKDRVKSYFAPPSRLEPKTRQLVSQINELEYLIT 71 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E EAL+LE N+IKR +P FN+ L+DDK FPY+ IT K P +Y R + G YFG Sbjct: 72 GSEQEALILELNLIKRHRPYFNVRLKDDKGFPYLKITLNEKWPRIYITRSMADDGGRYFG 131 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS +V T+ L+ F RSC + R+RPCL + I +C PCTG+IS + Y Sbjct: 132 PFASTRSVRHTLQVLKELFRFRSCNRTEPEKRSRPCLEYDIHQCLSPCTGKISKQDYDHL 191 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND---SIYN 240 + +A FL G + + + + MN+A+ + DYE+A + RD+++++ + + Sbjct: 192 ISQAILFLEGKQDKVLKLLNKLMNEASARLDYETAALRRDQISSIKEVIEGQQLAARVSG 251 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-C 299 D + +L+ +Q F G+ G +F L+ E ILS F++QFY Sbjct: 252 EQDAIAFAQEGDLSMVQVFFIRRGKLIGRESFSLQGTREEKPGDILSEFVKQFYHSSTQI 311 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQK 355 P I+ + +LE ++ G KV+IT +G+ + +I NA ++ + Sbjct: 312 PPKIVTQYPLSDREILEKWLSERRGGKVQITAGLRGQPKDLINIVAENAREQLKQARIKN 371 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS+ ++ L++ LP P+RIE YD S+I G +AVG MVV K YR+F Sbjct: 372 LSSAVTLTDALEELQTALGLPLPPQRIEGYDISNIQGTNAVGSMVVFENGKPQKAHYRRF 431 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 + VK DD +M++ V+ RRF +L K+ SF P ++++DGGKGQ Sbjct: 432 RIKT--VKGADDFSMLKEVISRRFGRLNKD---------NAGESFARRPSLMLIDGGKGQ 480 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 LS+ + L L +E + +I +AK + E + K + L P L +QR+RD Sbjct: 481 LSSVKETLDTLGLEGQ-AVIGLAKEFE-----EIYLPGKSAPIRLTANSPALQLLQRVRD 534 Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFA+ H R K+ S LD I GIGP R+RLL+++FG+V I ++S + L+ ++G Sbjct: 535 EAHRFALGYHLNIRHKSGLTSTLDGIPGIGPSRRRLLIKTFGSVAGIRQASLDELSQVKG 594 Query: 595 ISKKIACKIYNHF 607 I++ +A I Sbjct: 595 INQALALSIKELL 607 >gi|229846976|ref|ZP_04467082.1| excinuclease ABC subunit C [Haemophilus influenzae 7P49H1] gi|229810060|gb|EEP45780.1| excinuclease ABC subunit C [Haemophilus influenzae 7P49H1] Length = 609 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 210/616 (34%), Positives = 336/616 (54%), Gaps = 32/616 (5%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 PGVY+M D +V+YVGKA +L+KR+ SY N + + +++ I++I +T +E Sbjct: 13 HEPGVYRMYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVASIHHIDTMLTSSET 72 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EALLLE N IK +PR+N+LLRDDKS+P+IL+T K + P + +R S G YFGP+ Sbjct: 73 EALLLEHNFIKLYQPRYNVLLRDDKSYPFILLT-KERHPRITSYRGSKKFAGEYFGPYPH 131 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHE 186 AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCS PC +S E+Y + V Sbjct: 132 AGAVRETLSLLQKLFPVRQCENSVYSNRSRPCLQYQIGRCSAPCVQGYVSDEEYNQQVEL 191 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMD 243 A+ FL G + + + + M QA+ D+E A +RD++ A+ + + MD Sbjct: 192 ARLFLQGKDQQVLDYLIGKMEQASKNLDFEQAARYRDQIQAVRSVIEKQFVSNERLDDMD 251 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPC 299 S+ + LAC+Q F G+ G ++F K + + +++ F+ QFY + Sbjct: 252 IMSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTETFVGQFYLQGHQGRSI 311 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P +I++ + E S LE Q G KV I +G+K K ++ A +NA + +L Sbjct: 312 PNSIIVDRQLAEKSGLEQLLTDQAGRKVTIQESVKGDKSKYLQLAQVNAKAALNVQLKQS 371 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + LP I R+E +D SH MG V VV + G +K+ YR+FN+ Sbjct: 372 SRMSERYQALCDLLNLPEIK-RMECFDISHTMGNQTVASCVVFNQEGPLKSDYRRFNIEG 430 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A M L++R+ + ++ ++ PD++ +DGGKGQL+ A Sbjct: 431 --ITGGDDYAAMEQALQKRYERDLEEDK---------------IPDIIFIDGGKGQLNRA 473 Query: 480 QGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRD 535 V + L V +NR +I +AKG R AG E + K E + L L+ IQ +RD Sbjct: 474 LNVFQHLQVKWDKNRPHLIGVAKGVDRRAGQEVLIISKQEREIHLPDDSLALHLIQHIRD 533 Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E+H AI+ HRK+R+KA S L+ I G+G R++ LL+ G ++ + +++ + +AS+ G Sbjct: 534 ESHNHAISGHRKKRQKAFTQSGLETIEGVGAKRRQALLKYLGGLQGVKKATLDEIASVPG 593 Query: 595 ISKKIACKIYNHFHKN 610 IS K+A +I+ + Sbjct: 594 ISPKLAERIFETLKND 609 >gi|167039707|ref|YP_001662692.1| excinuclease ABC subunit C [Thermoanaerobacter sp. X514] gi|300915044|ref|ZP_07132359.1| excinuclease ABC, C subunit [Thermoanaerobacter sp. X561] gi|307724967|ref|YP_003904718.1| excinuclease ABC subunit C [Thermoanaerobacter sp. X513] gi|229557872|sp|B0K680|UVRC_THEPX RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|166853947|gb|ABY92356.1| excinuclease ABC, C subunit [Thermoanaerobacter sp. X514] gi|300888768|gb|EFK83915.1| excinuclease ABC, C subunit [Thermoanaerobacter sp. X561] gi|307582028|gb|ADN55427.1| excinuclease ABC, C subunit [Thermoanaerobacter sp. X513] Length = 615 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 199/618 (32%), Positives = 334/618 (54%), Gaps = 18/618 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRF 60 + +PE PGVY M D +G+++YVGKA L+ R++ Y + ++ M+S + + + Sbjct: 6 KLKLLPEKPGVYIMKDKSGKIIYVGKAVVLKNRVRQYFQNKEKQLPKVKVMLSHVEDFEY 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT TE+EAL+LE N+IK+ KP++N+LL+DDK++PYI +T + P + R Sbjct: 66 IVTDTELEALMLECNLIKKYKPKYNVLLKDDKNYPYIKVTVNEEYPRIMFTRRIEPDGAK 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP++S AV +TI +++ F +R+C ++ + + R CL + I CS PCT +I+ E Sbjct: 126 YFGPYSSAFAVRETIKLVRKMFPIRTCNKNIEKDMGKVRECLYYHIGLCSAPCTNKINKE 185 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y++ V +A FL G L +K+ +M +A + +E A RD++ A+ + Sbjct: 186 DYIKLVDQAVLFLDGKRDWLIQKLKEDMKKAAEELRFEEAARIRDQIFAIERTSEKQKVV 245 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D S+ + +++CIQ F G+ G +++K +I+S F++QFY Sbjct: 246 SVGEDEQDIISMARSADISCIQVFFVRDGKLSGREHYYMKNTEGMERGEIISSFIKQFYE 305 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--H 352 P P+ I+ E +E+ LL ++ G KV IT+P +G+K+++++ NA + + Sbjct: 306 GAPYIPKEIITDVELDESELLSEWLSQKRGNKVFITIPVRGKKKELVDMVYQNALEALKN 365 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + EIS ++ + + L + RIE YD S+ G VG MVV + K+QY Sbjct: 366 DISIREEISKDQVVLELSNLVGLDYAK-RIEAYDISNTRGQDNVGSMVVFVDGKPKKSQY 424 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP-KKQEYSFPSWPDVVILDG 471 RKFN+ V+ QDD MR V+ERRF I+ +E + ++ + F PD++ +DG Sbjct: 425 RKFNIK--YVEGQDDYESMREVIERRFLHAIEEKELIEKGELEEDKAKFAEMPDLIFVDG 482 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 G G ++A VL L + I + + K K V + + M I Sbjct: 483 GIGHVNAVLQVLSGLGIS--IPVYGMVKDSKHRTRG---LVSPQGEIDIPMTTKAFRLIA 537 Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 ++++EAHRFAIT H++++ K S L I GIG R + L +F +++ I R+S E L Sbjct: 538 QIQEEAHRFAITFHKEKQSKRFKSELLNIPGIGKKRAKALYDAFKSIEEIKRASVEDLKK 597 Query: 592 IEGISKKIACKIYNHFHK 609 +EG+++K A +Y +F K Sbjct: 598 VEGMNEKAAQAVYEYFRK 615 >gi|43290|emb|CAA27329.1| unnamed protein product [Escherichia coli] Length = 588 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 209/602 (34%), Positives = 329/602 (54%), Gaps = 31/602 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D G V+YVGKA +L+KR+ SY SN + + +++QI I TVT TE EALLLE Sbjct: 1 MYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTETEALLLEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YFGPF + AV +T Sbjct: 61 NYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193 + LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y + V + FLSG Sbjct: 120 LALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NRMDCFSLYHNK 251 + + ++ M A+ ++E A RD++ A+ + + +D + + Sbjct: 180 KDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGDDLDVIGVAFDA 239 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSE 307 +AC+ F G+ G+ ++F K + ++++ F+ QFY + P ILL Sbjct: 240 GMACVHVLFIRQGKVLGSRSYFPKVPGGTKLSEVVETFVGQFYLQGSQMRTLPGEILLDF 299 Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367 + +LL S + G K+ + +G++ + ++ A NA + T KLS + + L Sbjct: 300 NLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLT 359 Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427 LP + R+E +D SH MG V VV NG ++ +YR++N+ + DD Sbjct: 360 ALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNI--TGITPGDD 416 Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487 A M VL RR+ + I + + PDV+++DGGKGQL+ A+ V +L+ Sbjct: 417 YAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQLAQAKNVFAELD 461 Query: 488 V---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 V +N ++ +AKG R AG+E F +GE L P L+ IQ +RDE+H AI Sbjct: 462 VSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIG 521 Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A + GIS+ +A K Sbjct: 522 GHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEK 581 Query: 603 IY 604 I+ Sbjct: 582 IF 583 >gi|153208613|ref|ZP_01946870.1| excinuclease ABC, C subunit [Coxiella burnetii 'MSU Goat Q177'] gi|165919012|ref|ZP_02219098.1| excinuclease ABC, C subunit [Coxiella burnetii RSA 334] gi|212218610|ref|YP_002305397.1| excinuclease ABC subunit C [Coxiella burnetii CbuK_Q154] gi|226698346|sp|B6J7K3|UVRC_COXB1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|120575874|gb|EAX32498.1| excinuclease ABC, C subunit [Coxiella burnetii 'MSU Goat Q177'] gi|165917267|gb|EDR35871.1| excinuclease ABC, C subunit [Coxiella burnetii RSA 334] gi|212012872|gb|ACJ20252.1| excinuclease ABC subunit C [Coxiella burnetii CbuK_Q154] Length = 609 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 222/618 (35%), Positives = 339/618 (54%), Gaps = 26/618 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P GVYQM D G+V+YVGKA NLQKR+ SY + + M++Q+ +I+ T+ Sbjct: 10 LKTLPTGSGVYQMQDAQGKVIYVGKARNLQKRVSSYFRRQLDS-KTQAMMAQVQSIQTTI 68 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T E EALLLEA+ IK+ +PR+N+LLRDDKS+PY+ + K P L +R + G YF Sbjct: 69 TRNENEALLLEASFIKQFRPRYNVLLRDDKSYPYLYLATHQKFPRLDFYRGAKKAPGRYF 128 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +V + + +Q+ F LR C++S F++RTRPCL +QIKRC+ PC G ++ ++Y Sbjct: 129 GPYPNAGSVRENLALIQKLFKLRQCSESFFKNRTRPCLQYQIKRCTAPCVGYVNEQEYRR 188 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YN 240 V +A F G N + K+ M A+ +E A +RD++ L +Q Sbjct: 189 QVEDAILFFEGKNDQVIIKLTERMEVASENLVFEEAAHYRDQIRQLRRLQKQQIITGGKG 248 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT----D 296 +D + + F G+ G FF T +T L F+ Q+Y + Sbjct: 249 NIDIIGIAESNGAIGFAILFIRSGRMIGHKPFFPNTPLGTTLQTALVEFIPQYYLSPLRN 308 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 PE I+ SE E+ ++ + K+ IT K+ ++ A +NA ++ +Q L Sbjct: 309 GDIPERIVTSEPLEDRLWIQRALSSGLNRKLAITDQKRAPYKQWQAMAALNAAQALSQHL 368 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + + + + L+ K ALP+ RIE +D SH +G + V VV GE G +K YR+FN Sbjct: 369 AQKNTFALKLEAIQKSLALPNPIARIECFDISHTLGEATVASCVVFGEEGPIKKDYRRFN 428 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + V DD +R VL RR+ +L + E PDV+++DGG GQL Sbjct: 429 I--SGVTPGDDYGALRQVLTRRYVRLKEGE--------------GILPDVLLIDGGMGQL 472 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535 A VL++L V I + +IAKGP R AG+EK FV + E + L + + IQ++RD Sbjct: 473 RQAAEVLEELQVSGVI-LTAIAKGPGRKAGLEKLFVWGRREEIHLPADNIAFHLIQQIRD 531 Query: 536 EAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFAIT H RR K+ S L EI GIGP R++ LL+ FG ++ + R+S E +A + G Sbjct: 532 EAHRFAITAHCNRRAKRRVESTLQEIEGIGPKRRQKLLKYFGGLQELQRASIEEIARVPG 591 Query: 595 ISKKIACKIYNHFHKNTS 612 +S+ +A IY+ H++ Sbjct: 592 VSETLAKAIYDACHQHKG 609 >gi|146292740|ref|YP_001183164.1| excinuclease ABC subunit C [Shewanella putrefaciens CN-32] gi|189038094|sp|A4Y5Y2|UVRC_SHEPC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|145564430|gb|ABP75365.1| Excinuclease ABC subunit C [Shewanella putrefaciens CN-32] Length = 609 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 197/611 (32%), Positives = 326/611 (53%), Gaps = 28/611 (4%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 GVY+M D+ G V+YVGKA +L+KR+ SY N + ++S I++I T+T +E Sbjct: 16 SSAGVYRMYDVKGDVIYVGKAKDLKKRLSSYFRKNLDNVKTQALVSHIHHIDVTLTHSET 75 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 +ALLLE + IK+ P++N+LLRDDKS+PYIL++ +H+ P L HR +G YFGP+ + Sbjct: 76 DALLLENDYIKQYMPKYNVLLRDDKSYPYILLS-QHEHPRLAYHRGPQREKGHYFGPYPN 134 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 AV ++++ +Q+ F +R C D ++ R+RPCL +Q+ RCS PC G++S+ Y E V A Sbjct: 135 GGAVRESLHLMQKLFPIRQCDDLYYKSRSRPCLQYQLSRCSAPCVGKVSNADYDEQVKLA 194 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCF 245 FL G + + + M QA +++YE A RD++ AL + + N MD Sbjct: 195 SLFLKGKDQQVISTLVAKMEQAAQQQEYEQAARFRDQIMALRKVAEQQEVSNNKGDMDVI 254 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPE 301 +++ +AC F G+ G+ +++ +++ ++L F+ QFY + + P+ Sbjct: 255 GVHYASGIACFHLLFIREGKIFGSRSYYPSVPAQTDMDEVLRSFILQFYLNADIQRTIPK 314 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 +++S EE LE + K I + ++ + A+ NA + +LS + + Sbjct: 315 EVVISHNFEELHELEAAVSIALNKKFSIKTNVRADRASFLRLAVTNATNAVITRLSHKNT 374 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 + + L R+E +D SH MG S+V VV G K +YR++N+ Sbjct: 375 VEQRFVLLEEILELSTPIHRMECFDISHTMGESSVASCVVFNREGPHKGEYRRYNIEG-- 432 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 + DD A M+ + RRF ++ + PD++ +DGG GQL AQ Sbjct: 433 ITPGDDYAAMKQAITRRFDKIEAGGK---------------IPDILFIDGGLGQLRIAQK 477 Query: 482 VLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAH 538 ++ + ++++ +I +AKG R G+E + E + L P L+ IQ +RDE+H Sbjct: 478 IVDEKFVHLDKAPQLIGVAKGEGRKPGLETLILGDTETSFSLEGDSPALHLIQHIRDESH 537 Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR RR+K S L+ I GIGP R++ LLQ G ++ + +S L + GIS Sbjct: 538 RFAITGHRNRRQKTRNTSTLESIPGIGPKRRKALLQHLGGLQEVKGASVAELVKVPGISI 597 Query: 598 KIACKIYNHFH 608 ++A I++ Sbjct: 598 EMAQTIHDALR 608 >gi|161831046|ref|YP_001597046.1| excinuclease ABC subunit C [Coxiella burnetii RSA 331] gi|189038045|sp|A9NDQ6|UVRC_COXBR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|161762913|gb|ABX78555.1| excinuclease ABC, C subunit [Coxiella burnetii RSA 331] Length = 609 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 221/618 (35%), Positives = 338/618 (54%), Gaps = 26/618 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P GVYQM D G+V+YVGKA NLQKR+ SY + + M++Q+ +I+ T+ Sbjct: 10 LKTLPTGSGVYQMQDAQGKVIYVGKARNLQKRVSSYFRRQLDS-KTQAMMAQVQSIQTTI 68 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T E EALLLEA+ IK+ +PR+N+LLRDDKS+PY+ + K P L +R + G YF Sbjct: 69 TRNENEALLLEASFIKQFRPRYNVLLRDDKSYPYLYLATHQKFPRLDFYRGAKKAPGRYF 128 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +V + + +Q+ F LR C++S F++RTRPCL +QIKRC+ PC G ++ ++Y Sbjct: 129 GPYPNAGSVRENLALIQKLFKLRQCSESFFKNRTRPCLQYQIKRCTAPCVGYVNEQEYRR 188 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YN 240 V +A F G N + K+ M A+ +E A +RD++ L +Q Sbjct: 189 QVEDAILFFEGKNDQVIIKLTERMEVASENLVFEEAAHYRDQIRQLRRLQKQQIITGGKG 248 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT----D 296 +D + + F G+ G FF T +T L F+ Q+Y + Sbjct: 249 NIDIIGIAESNGAIGFAILFIRSGRMIGHKPFFPNTPLGTTLQTALVEFIPQYYLSPLRN 308 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 PE I+ SE E+ ++ + K+ IT K+ ++ A +NA ++ +Q L Sbjct: 309 GDIPERIVTSEPLEDRLWIQRALSSGLNRKLAITDQKRAPYKQWQAMAALNAAQALSQHL 368 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + + + + L+ K ALP+ RIE +D SH +G + V VV GE G +K YR+FN Sbjct: 369 AQKNTFALKLEAIQKSLALPNPIARIECFDISHTLGEATVASCVVFGEEGPIKKDYRRFN 428 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + V DD +R L RR+ +L + E PDV+++DGG GQL Sbjct: 429 I--SGVTPGDDYGALRQALTRRYVRLKEGE--------------GILPDVLLIDGGMGQL 472 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535 A VL++L V I + +IAKGP R AG+EK FV + E + L + + IQ++RD Sbjct: 473 RQAAEVLEELQVSGVI-LTAIAKGPGRKAGLEKLFVWGRREEIHLPADNIAFHLIQQIRD 531 Query: 536 EAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFAIT H RR K+ S L EI GIGP R++ LL+ FG ++ + R+S E +A + G Sbjct: 532 EAHRFAITAHCNRRAKRRVESTLQEIEGIGPKRRQKLLKYFGGLQELQRASIEEIARVPG 591 Query: 595 ISKKIACKIYNHFHKNTS 612 +S+ +A IY+ H++ Sbjct: 592 VSETLAKAIYDACHQHKG 609 >gi|238756487|ref|ZP_04617793.1| UvrABC system protein C [Yersinia ruckeri ATCC 29473] gi|238705303|gb|EEP97714.1| UvrABC system protein C [Yersinia ruckeri ATCC 29473] Length = 588 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 212/606 (34%), Positives = 326/606 (53%), Gaps = 31/606 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D G V+YVGKA +L+KR+ SY + ++ + ++ I I TVT TE EALLLE Sbjct: 1 MYDAKGTVIYVGKAKDLKKRLTSYFRTQVNSRKTETLVKNIAQIDVTVTHTETEALLLEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK +PR+N+LLRDDKS+P I ++ P L HR + +G YFGPF + AV +T Sbjct: 61 NYIKLYQPRYNVLLRDDKSYPLIFLS-ADTHPRLATHRGAKHEKGEYFGPFPNSYAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193 + LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S +Y V + FLSG Sbjct: 120 LALLQKLFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVTGLVSEGEYQRQVDYVRLFLSG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--DCFSLYHNK 251 + + ++ M +A+ +E A RD++ A+ + + D + Sbjct: 180 KDQQVLTQLISRMEKASHLLHFEEAARIRDQIQAVRRVTEKQFVSGSHEDLDVIGVAFES 239 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLSE 307 LAC+ F G+ G+ ++F K + + ++++ F+ QFY + P ILL Sbjct: 240 GLACVHVLFIRQGKVLGSRSYFPKVPNGTELSEVVQTFVGQFYLQGSQSRTLPGEILLDF 299 Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367 E LL S + G K++I +G++ + ++ A NA + +LS + + +K Sbjct: 300 TLTEKDLLAESLSELAGRKIQIQSRPRGDRARYLKLARTNAATALVTRLSQQSTIHQRMK 359 Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427 + L R+E +D SH MG V VV NG VK++YR++N+ + DD Sbjct: 360 ALVQALKLD-EINRMECFDISHTMGEQTVASCVVFDANGPVKSEYRRYNI--TGITPGDD 416 Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487 A M VL+RR+ + I ++ PDV+ +DGGKGQL+ A V +LN Sbjct: 417 YAAMAQVLKRRYGKAIDEQK---------------VPDVIFIDGGKGQLAQAIDVFAELN 461 Query: 488 V---ENRITIISIAKGPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 V + + +I +AKG R AG+E FFV +GE + L P L+ IQ +RDE+H AIT Sbjct: 462 VPWDKQKPLLIGVAKGSDRKAGLETLFFVAEGEGVSLPSDSPALHLIQHIRDESHNHAIT 521 Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR+RR K S L+ I G+GP R+++LL+ G ++ + +S E +A + IS+ +A K Sbjct: 522 GHRQRRSKVKNTSALELIEGVGPKRRQILLKYMGGLQPLLNASVEEIAKVPSISQALAEK 581 Query: 603 IYNHFH 608 IYN Sbjct: 582 IYNALK 587 >gi|57234009|ref|YP_181929.1| excinuclease ABC, C subunit [Dehalococcoides ethenogenes 195] gi|90111066|sp|Q3Z770|UVRC_DEHE1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|57224457|gb|AAW39514.1| excinuclease ABC, C subunit [Dehalococcoides ethenogenes 195] Length = 607 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 214/613 (34%), Positives = 330/613 (53%), Gaps = 27/613 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +PE PGVY M + G ++YVGKA L+ R+KSY + + ++SQIN + + +T Sbjct: 12 SLPENPGVYLMKNAQGEIIYVGKAAVLKDRVKSYFVPPSRLEPKTRQLVSQINELEYLIT 71 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E EAL+LE N+IKR +P FN+ L+DDK FPY+ IT K P +Y R + G YFG Sbjct: 72 GSEQEALILELNLIKRHRPYFNVRLKDDKGFPYLKITLNEKWPRIYITRSMADDGGRYFG 131 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS +V T+ L+ F RSC + R+RPCL + I +C PCTG+IS + Y Sbjct: 132 PFASTRSVRHTLQVLKELFRFRSCNRTEPEKRSRPCLEYDIHQCLSPCTGKISKQDYDHL 191 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND---SIYN 240 + +A FL G + + +A+ MN+A+ + DYE+A + RD+++++ + + Sbjct: 192 ISQAILFLEGKQDKVLKLLAKLMNEASARLDYETAALRRDQISSIKEVIEGQQLAARVSG 251 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-C 299 D + +L+ +Q F G+ G +F L+ E ILS F++QFY Sbjct: 252 EQDAIAFAQEGDLSMVQVFFIRRGKLIGRESFSLQGTREEKPGDILSEFVKQFYHSSTQI 311 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQK 355 P I+ + +LE ++ G KV+IT +G+ + +I NA ++ + Sbjct: 312 PPKIVTQYPLSDREILEKWLSERRGGKVQITAGLRGQPKDLINIVAENAREQLKQARIKN 371 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS+ + L++ LP P+RIE YD S+I G +AVG MVV K YR+F Sbjct: 372 LSSAATLTDALEELQTALGLPLPPQRIEGYDISNIQGTNAVGSMVVFENGKPQKAHYRRF 431 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 + VK DD +M++ V+ RRF +L K+ SF P ++++DGGKGQ Sbjct: 432 RIKT--VKGADDFSMLKEVISRRFGRLNKD---------NAGESFARRPSLMLIDGGKGQ 480 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 LS+ + L L +E + +I +AK + E + K E + L P L +QR+RD Sbjct: 481 LSSVKETLDTLGLEGQ-AVIGLAKEFE-----EIYLPGKSEPIRLMANSPALQLLQRVRD 534 Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFA+ H R K+ S LD I GIGP R+RLL+++FG+V I ++S + L ++G Sbjct: 535 EAHRFALGYHLNIRHKSGLTSALDGIPGIGPSRRRLLIKTFGSVSGIRQASLDELLQVKG 594 Query: 595 ISKKIACKIYNHF 607 I++ +A I Sbjct: 595 INQALALSIKELL 607 >gi|296129791|ref|YP_003637041.1| excinuclease ABC, C subunit [Cellulomonas flavigena DSM 20109] gi|296021606|gb|ADG74842.1| excinuclease ABC, C subunit [Cellulomonas flavigena DSM 20109] Length = 670 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 194/633 (30%), Positives = 315/633 (49%), Gaps = 44/633 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 ++P+ PGVY+ D GRV+YVGKA +L+ R+ SY N R M++ +++TV Sbjct: 13 EIPDAPGVYRFRDEHGRVVYVGKAKSLRNRLNSYFQDLANLHPRTQQMVTTAAAVQWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE + IK PRFN+ RDDKS+PY+ +T ++P + R + YFG Sbjct: 73 GTEVEALALEYSWIKEFDPRFNVKYRDDKSYPYLAVTMADEVPRVQVMRGAKRRGTRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180 P+A A+ +T++ L R F +R+C+ VFR + RPCLL I +CS PC G I E++ Sbjct: 133 PYAHAWAIRETVDLLLRVFPVRTCSAGVFRRARQQGRPCLLGYIDKCSAPCVGRIGIEEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + + F++G ++ R M A + DYE A RD + L N + Sbjct: 193 HQLAQDFCDFMAGDTGRFTRRLTRAMKDAAAEMDYERAARLRDDVRTLEKATERNAVVLS 252 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D F+L ++ A +Q G+ RG + ++ + +A+++ + L+Q Y + Sbjct: 253 DGTDADVFALAGDELEAAVQVFHVRDGRIRGQRGWVVEKVEDLDDAELVEHLLQQVYGAE 312 Query: 298 PC-------PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR 350 P +L+ + ++ G +V++ VP++G+KR++ L NA Sbjct: 313 DPEAATASVPREVLVPVLPPDVEQVQAWLTGLRGSRVQVRVPQRGDKRELAATVLRNAEH 372 Query: 351 SHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 + + S M L++ + LP P RIE YD SH G MVV + Sbjct: 373 ALALHRTRRAGDLTSRSMALREIQEALDLPSAPLRIECYDVSHNQGTYQSASMVVFEDGL 432 Query: 407 FVKNQYRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKNEEN----------------- 448 K++YR F + + + +DD A M V+ RRF + + + Sbjct: 433 ARKSEYRLFTVRGPEGQGARDDTAAMHEVITRRFRRYLAERADSHDPELGDAEEDDAPRT 492 Query: 449 -LNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507 + F P++V++DGG Q++AA L +L +++ + + +AK + Sbjct: 493 GPVDERTGRPARFAYPPNLVVVDGGPPQVAAAAAALAELGIDD-VALCGLAKRLE----- 546 Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPL 566 E + + ++L LY +QR+RDEAHRFAIT HRKRR K S LD++ G+GP Sbjct: 547 EVWLPGEEYPVILRRASEGLYLLQRVRDEAHRFAITAHRKRRSKGMTASVLDDVPGLGPA 606 Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 RK LL+ FG+VK + ++ E +A+I G+ + Sbjct: 607 RKAALLRHFGSVKRLRAATAEEIATIPGMGART 639 >gi|152970955|ref|YP_001336064.1| excinuclease ABC subunit C [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150955804|gb|ABR77834.1| excinuclease ABC subunit C [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 588 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 205/606 (33%), Positives = 330/606 (54%), Gaps = 31/606 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D G V+YVGKA +L+KR+ SY SN + + +++ I I TVT TE EALLLE Sbjct: 1 MYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVALIAQIDVTVTHTETEALLLEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YFGPF + AV +T Sbjct: 61 NYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193 + LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y + V + FL+G Sbjct: 120 LALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYAQQVEYVRLFLAG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NRMDCFSLYHNK 251 + + ++ M +A+ ++E A RD++ A+ + + +D + + Sbjct: 180 KDDQVLTQLIARMEKASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGDDLDVIGVAFDA 239 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSE 307 +AC+ F G+ G+ ++F K + +++ F+ QFY + P ILL Sbjct: 240 GMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQMRTLPGEILLDF 299 Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367 + +LL S + G ++ + +G++ + ++ A NA + T KLS + + L+ Sbjct: 300 NLGDKTLLADSLSELAGRRINVQTKPRGDRARYLKLARTNAATALTTKLSQQSTIHQRLQ 359 Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427 LP + R+E +D SH MG V VV NG ++ +YR++N+ + DD Sbjct: 360 ALASVLELPAVK-RMECFDISHTMGEQTVASCVVFDSNGPLRAEYRRYNI--TGITPGDD 416 Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487 A M VL RR+ + I + + PDV+++DGGKGQL+ A+ V +L+ Sbjct: 417 YAAMNQVLRRRYGKAIDDNK---------------IPDVILIDGGKGQLAQAKAVFAELD 461 Query: 488 V---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 V ++ ++ +AKG R AG+E F +GE L P L+ IQ +RDE+H AI+ Sbjct: 462 VPWDKHHPLLLGVAKGSDRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIS 521 Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HRK+R K S L+ I G+GP R+++LL+ G ++ + ++S E +A + GIS +A K Sbjct: 522 GHRKKRAKVKSTSSLETIEGVGPKRRQMLLKYMGGLQGLQQASVEEIAKVPGISHALAEK 581 Query: 603 IYNHFH 608 I+ Sbjct: 582 IFYSLK 587 >gi|50121805|ref|YP_050972.1| excinuclease ABC subunit C [Pectobacterium atrosepticum SCRI1043] gi|81644574|sp|Q6D363|UVRC_ERWCT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|49612331|emb|CAG75781.1| excinuclease ABC subunit C [Pectobacterium atrosepticum SCRI1043] Length = 610 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 210/618 (33%), Positives = 333/618 (53%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D V+YVGKA +L+KR+ SY S+ + + ++ I +I T+ Sbjct: 11 LKTVTSQPGVYRMYDAGNTVIYVGKAKDLKKRLASYFRSHVASRKTEALVKSIKHIDVTI 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPMIFLS-GDAHPRLTVHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + +AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E Y Sbjct: 130 GPFPNGNAVRETLILLQKLFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVSGLVSEEDYR 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + V + FLSG + + ++ M A+ +E A RD++ A+ + + Sbjct: 190 QQVEYVRLFLSGKDQQVLNQLISRMESASRDLRFEDAARIRDQIQAVRRVTEKQFVSGDG 249 Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295 +D S+ + +AC+ F G+ G+ ++F K + +++ F+ QFY + Sbjct: 250 EDLDVISVAFDAGMACVYVLFIRQGKVLGSRSYFPKVPGGTELGEVVQTFVGQFYLQGNS 309 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + LL S G KV+I +G++ + ++ A NA + K Sbjct: 310 GRTLPTEILLDFTLPDKDLLTESLTAVAGRKVQIQTKPRGDRARYLKLARTNAATALVTK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP R+E +D SH MG V VV NG ++++YR++ Sbjct: 370 LSQQSTIHQRLAALANVLQLP-EIHRMECFDISHTMGEQTVASCVVFDANGPLRSEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + + DD A M VL+RR+ + + + + PDV+++DGGKGQ Sbjct: 429 NI--SGITPGDDYAAMAQVLQRRYGKALDDSK---------------IPDVIVIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQ 531 L AQ V L V +N+ ++ +AKG R AG+E F++ GE + L P L+ IQ Sbjct: 472 LGQAQAVFDSLQVSWDKNKPLLLGVAKGSDRKAGLETLFLEATGEGMALPADSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RD++H AI HRK+R K S L+ I G+GP R++ LL+ G ++ + +S E +A Sbjct: 532 HIRDDSHDHAIGGHRKKRAKVKNTSTLELIEGVGPKRRQTLLKYMGGLQPLMNASIEEIA 591 Query: 591 SIEGISKKIACKIYNHFH 608 ++ GIS +A KI++ Sbjct: 592 NVPGISHGLAEKIFHALK 609 >gi|312897549|ref|ZP_07756969.1| excinuclease ABC subunit C [Megasphaera micronuciformis F0359] gi|310621401|gb|EFQ04941.1| excinuclease ABC subunit C [Megasphaera micronuciformis F0359] Length = 610 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 198/624 (31%), Positives = 305/624 (48%), Gaps = 37/624 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRF 60 +++ PGVY D GR++YVGKA NL+ R+KSY+ +++ ++ M+S ++ Sbjct: 10 KIKELTTEPGVYLWKDEKGRIIYVGKAVNLRNRVKSYVRKDSNRAVKVAAMMSHAVDLET 69 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V E EAL+LE +IK+ PR+NI+LRDDK++PYI +T + P ++ R Sbjct: 70 IVVANEAEALILENTLIKKHHPRYNIMLRDDKTYPYIKVTLNEEYPRVFMTRRVLRDGAR 129 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGPFA AV + + +Q LR+C RPCL + + C PC IS Y Sbjct: 130 YFGPFADAGAVHRVLKLMQTALHLRTCRSMKVE---RPCLQYHLGHCEAPCVNYISKTAY 186 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + A L G N L ++ M A E +E A ++RD+LAAL IQ D + Sbjct: 187 QKQARLAVDALEGRNKTLYRELQDKMEAAATAEQFEKAAMYRDQLAALKIIQEQQDIVTT 246 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D Y + +Q G+ G F L ++ + A + L Q+Y + Sbjct: 247 GAGDTDVIGFYAEGDKTAVQIYTIRGGKLMGRENFSLDNSNDESTAALTGAVLDQYYVEG 306 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT---- 353 ++ + E+ E Q G V I +P++G K++++E A NA Sbjct: 307 VFIPREIVVPDVEDKEAYEHRLGVQKGRNVDIIIPRRGVKKRLLEMAENNAKVLWEQRRL 366 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 Q + + ++ K LP +P R+E +D SH G V MVV + K++YR Sbjct: 367 QWRNDKNKTTGAVEALAKVLDLPCLPVRMECFDISHTQGIETVASMVVFEQGRPAKSEYR 426 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 +F L DD M ++ERR+S PD++I+DGGK Sbjct: 427 RFKLKTVQG-KPDDFKSMAEIMERRYS-----------------EKDWPVPDLIIIDGGK 468 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 GQL AA V+++ + +IS+AK + E F + E+++L+ P L +Q + Sbjct: 469 GQLHAALPVIRRAGTDA--PVISLAKRIE-----EVFVEGRSESIILSHHTPELQLLQAI 521 Query: 534 RDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDEAHRFAIT HRK R K++ S LD I GIGP R++ + Q+F T+ I +S + LA++ Sbjct: 522 RDEAHRFAITYHRKLRGKRSLVSVLDHIEGIGPKRRKAVWQAFKTLDDIKAASIDELAAV 581 Query: 593 EGISKKIACKIYNHFHKNTSHTPT 616 +G+++ A IY F T T Sbjct: 582 DGMNRSAAENIYYFFRLGTDEKRT 605 >gi|148825664|ref|YP_001290417.1| excinuclease ABC subunit C [Haemophilus influenzae PittEE] gi|189038059|sp|A5UB83|UVRC_HAEIE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|148715824|gb|ABQ98034.1| excinuclease ABC subunit C [Haemophilus influenzae PittEE] Length = 609 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 210/616 (34%), Positives = 335/616 (54%), Gaps = 32/616 (5%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 PGVY+M D +V+YVGKA +L+KR+ SY N + + +++ I++I +T +E Sbjct: 13 HEPGVYRMYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVASIHHIDTMLTSSET 72 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EALLLE N IK +PR+N+LLRDDKS+P+IL+T K + P + +R S G YFGP+ Sbjct: 73 EALLLEHNFIKLYQPRYNVLLRDDKSYPFILLT-KERHPRITSYRGSKKFAGEYFGPYPH 131 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHE 186 AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCS PC +S E+Y + V Sbjct: 132 AGAVRETLSLLQKLFPVRQCENSVYSNRSRPCLQYQIGRCSAPCVQGYVSDEEYNQQVEL 191 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMD 243 A+ FL G + + + + M QA+ D+E A +RD++ A+ + + MD Sbjct: 192 ARLFLQGKDQLVLDYLIGKMEQASRNLDFEQAARYRDQIQAVRSVIEKQFVSNERLDDMD 251 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPC 299 S+ + LAC+Q F G+ G ++F K + + +++ F+ QFY + Sbjct: 252 IMSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTETFVGQFYLQGHQGRSI 311 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P +I++ + E S LE Q G KV I +G+K K ++ A +NA + +L Sbjct: 312 PNSIIVDRQLAEKSELEQLLTDQAGRKVTIQESVKGDKSKYLQLAQVNAKAALNVQLKQS 371 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + LP I R+E +D SH MG V VV + G +K+ YR+FN+ Sbjct: 372 SRMSERYQALCDLLNLPEIK-RMECFDISHTMGNQTVASCVVFNQEGPLKSDYRRFNIEG 430 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A M L++R+ + ++ ++ PD++ +DGGKGQL+ A Sbjct: 431 --ITGGDDYAAMEQALQKRYERDLEEDK---------------IPDIIFIDGGKGQLNRA 473 Query: 480 QGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRD 535 V + L V +NR +I +AKG R AG E + K E + L L+ IQ +RD Sbjct: 474 LNVFQHLQVKWDKNRPHLIGVAKGVDRRAGQEVLIISKQEREIHLPDDSLALHLIQHIRD 533 Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E+H AI+ HRK+R+KA S L+ I G+G R++ LL+ G ++ + +++ + +AS+ G Sbjct: 534 ESHNHAISGHRKKRQKAFTQSGLETIEGVGAKRRQALLKYLGGLQGVKKATLDEIASVPG 593 Query: 595 ISKKIACKIYNHFHKN 610 IS K+A I+ + Sbjct: 594 ISLKLAETIFETLKND 609 >gi|15893799|ref|NP_347148.1| excinuclease ABC subunit C [Clostridium acetobutylicum ATCC 824] gi|21363070|sp|Q97LP6|UVRC_CLOAB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|15023370|gb|AAK78488.1|AE007565_7 Excinuclease ABC subunit C [Clostridium acetobutylicum ATCC 824] gi|325507922|gb|ADZ19558.1| excinuclease ABC subunit C [Clostridium acetobutylicum EA 2018] Length = 623 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 202/624 (32%), Positives = 335/624 (53%), Gaps = 19/624 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 + +P+ PGVY M + G V+YVGKA L+ R++ Y S NH+ ++ M+ I+ + Sbjct: 7 QLKNLPDKPGVYIMKNSLGEVIYVGKAKILKNRVRQYFRNSKNHSEKVKAMVKNISEFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK+ KPR+NILL+DDK +P+I +T P + R+ Sbjct: 67 IVTDSEIEALILECNLIKKYKPRYNILLKDDKHYPFIKVTMNEDFPRIIVTRNMVKDGSK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ V AV +T++ ++R F +R+C + + RPCL + IKRC+ PC G IS E Sbjct: 127 YFGPYPDVSAVHETVDLMRRIFPIRTCKKYIKENGENIRPCLNYHIKRCNAPCAGLISKE 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y E + +A +SG N+++ ++ M +A++ D+E A RD++ A + I Sbjct: 187 EYGEIIKKAVGLISGKNNDIIRELKEEMEKASMNLDFEKAADLRDKMLAAQKVTEKQKII 246 Query: 239 YNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D SLY ++ +C+Q F G+ G F ++ + I+ F+++FY+ Sbjct: 247 IGNFENEDYISLYSDEKDSCVQVFFLREGKIVGREHFIVENTAGENEGDIIGEFIKEFYS 306 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + + E+ +LLE + G KV+I +P++GEK+ IIE N+ + + Sbjct: 307 GTAYVPKSIYASAGEDLNLLENWLTMKRGSKVEIKIPQKGEKKDIIEMVKRNSKITLEKF 366 Query: 356 ----LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 LS + ++ IL + T+ L +P RIE YD S+I G +VG M+V E + Sbjct: 367 KIKLLSDKRLNENILIEMTEVIGLEEVPHRIEAYDISNIQGVDSVGSMIVFEEGKPKNSD 426 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILD 470 YR+F + VK +D MR +L RRF ++ +N + F +PD++++D Sbjct: 427 YRRFKIKT--VKGANDYDSMREILTRRFKHGLEEVNSIVNKNLSLSAGKFCVFPDLILMD 484 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ++ A VLK+ N++ I + + K + + + + + I+ F+ Sbjct: 485 GGKGQVNIALEVLKEFNID--IPVCGMVKDDRHNTRG---IIYNNNEIDIKSNRKIINFV 539 Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DE HRFAIT HR R K+ +S LD+I IG R++ LL+ FG+++ I +++ E L Sbjct: 540 TRVQDEVHRFAITYHRSLRDKRVLHSVLDDIPYIGEKRRKALLKHFGSIENIKKATYEEL 599 Query: 590 ASIEGISKKIACKIYNHFHKNTSH 613 I KK A I ++F Sbjct: 600 MKTPSIDKKAAESIVSYFRGRKGE 623 >gi|297545157|ref|YP_003677459.1| excinuclease ABC subunit C [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842932|gb|ADH61448.1| excinuclease ABC, C subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 615 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 200/618 (32%), Positives = 328/618 (53%), Gaps = 18/618 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 + +PE PGVY M D G ++YVGKA L+ R++ Y N ++ M+S +++ + Sbjct: 6 KLKLLPEKPGVYIMKDKKGEIIYVGKAIVLKNRVRQYFQNKENQLPKVKVMLSHVSDFEY 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT TE+EAL+LE N+IK+ KPR+N+LL+DDK++PYI +T + P + R Sbjct: 66 IVTDTELEALMLECNLIKKYKPRYNVLLKDDKNYPYIKVTVNEEYPRIMFTRRIEPDGAK 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSE 178 YFGP++S AV +TI +++ F +R+C ++ + + R CL + I CS PCT +I+ E Sbjct: 126 YFGPYSSAFAVRETIKLVRKMFPIRTCNRNIEKDMRKVRACLYYHIGLCSAPCTNKINKE 185 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y + V +A FL G L +K+ +M +A + +E A RD++ A+ + Sbjct: 186 DYRKLVDQAVLFLDGKRDWLVQKLKEDMQKAAEELRFEEAARIRDQIFAIESTSEKQKVV 245 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D S+ ++CIQ F G+ G +++K +I+S F++QFY Sbjct: 246 SVGEDEQDIISIARGAGISCIQVFFVRDGKLSGREHYYMKNTEGMERGEIISSFIKQFYE 305 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--H 352 P P+ I+ E +E LL ++ G KV IT+P +G+K+++++ NA + + Sbjct: 306 GAPYIPKEIITDVELDERELLSEWLSQKRGNKVFITIPMRGKKKELVDMVYQNALEALKN 365 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + EIS + + + L + RIE YD S+ G VG MVV + K+QY Sbjct: 366 DISIREEISKDQAVLELSNLVGLDYAR-RIEAYDISNTRGQDNVGAMVVFVDGKPKKSQY 424 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEY-SFPSWPDVVILDG 471 RKFN+ V+ QDD MR V+ERRF I+ +E + ++ F PD++++DG Sbjct: 425 RKFNVK--YVEGQDDYESMREVIERRFLHGIEEKELIEKGELEENKAKFAEMPDLILIDG 482 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 G G ++A VL L + I + + K K V + + M I Sbjct: 483 GIGHVNAVLQVLYGLGIA--IPVYGMVKDSKHRTRG---LVSPQGEIDIPMTTKAFRLIA 537 Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 ++++EAHRFAIT H++++ K S L I GIG R + L +F +++ I R+S E L Sbjct: 538 QIQEEAHRFAITFHKEKQSKRFKSELLNIPGIGEKRAKALYDAFNSIEEIKRASVEDLKK 597 Query: 592 IEGISKKIACKIYNHFHK 609 ++G+++K A +Y +F K Sbjct: 598 VKGMNEKAAQAVYEYFRK 615 >gi|145635242|ref|ZP_01790946.1| excinuclease ABC subunit C [Haemophilus influenzae PittAA] gi|145267521|gb|EDK07521.1| excinuclease ABC subunit C [Haemophilus influenzae PittAA] Length = 609 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 210/616 (34%), Positives = 337/616 (54%), Gaps = 32/616 (5%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 GVY+M D +V+YVGKA +L+KR+ SY N + + +++ I++I T+T +E Sbjct: 13 HESGVYRMYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVASIHHIDTTLTSSET 72 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EALLLE N IK +PR+N+LLRDDKS+P+IL+T K + P + +R S G YFGP+ Sbjct: 73 EALLLEHNFIKLYQPRYNVLLRDDKSYPFILLT-KERHPRITSYRGSKKFAGEYFGPYPH 131 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHE 186 V AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCS PC +S E+Y + V Sbjct: 132 VGAVRETLSLLQKLFPVRQCENSVYSNRSRPCLQYQIGRCSAPCVQGYVSDEEYNQQVEL 191 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMD 243 A+ FL G + + + + M QA+ D+E A +RD++ A+ + + MD Sbjct: 192 ARLFLQGKDQQVLDYLIGKMEQASRNLDFEQAARYRDQIQAVRSVIEKQFVSNERLDDMD 251 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPC 299 S+ + LAC+Q F G+ G ++F K + + +++ F+ QFY + Sbjct: 252 IMSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTETFVGQFYLQGHQGRSI 311 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P +I++ + E S LE Q G KV I +G+K K ++ A +NA + +L Sbjct: 312 PNSIIVDRQLAEKSELEQLLTDQAGRKVTIQESVKGDKSKYLQLAQVNAKAALNVQLKQS 371 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + LP I R+E +D SH MG V VV + G +K+ YR+FN+ Sbjct: 372 SRMSERYQALCDLLNLPEIK-RMECFDISHTMGNQTVASCVVFNKEGPLKSDYRRFNIEG 430 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A M L++R+ + ++ ++ PD++ +DGGKGQL+ A Sbjct: 431 --ITGGDDYAAMEQALQKRYERDLEEDK---------------IPDIIFIDGGKGQLNRA 473 Query: 480 QGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535 V + L V +NR +I +AKG R AG E + K+ + L L+ IQ +RD Sbjct: 474 LNVFQHLQVKWDKNRPHLIGVAKGVDRRAGQEVLIISKQDREIHLPDDSLALHLIQHIRD 533 Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E+H AI+ HRK+R+KA S L+ I G+G R++ LL+ G ++ + +++ + +AS+ G Sbjct: 534 ESHNHAISGHRKKRQKAFTQSGLETIEGVGAKRRQALLKYLGGLQGVKKATLDEIASVPG 593 Query: 595 ISKKIACKIYNHFHKN 610 IS K+A +I+ + Sbjct: 594 ISPKLAERIFETLKND 609 >gi|238784688|ref|ZP_04628692.1| UvrABC system protein C [Yersinia bercovieri ATCC 43970] gi|238714367|gb|EEQ06375.1| UvrABC system protein C [Yersinia bercovieri ATCC 43970] Length = 588 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 214/606 (35%), Positives = 330/606 (54%), Gaps = 31/606 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D AG V+YVGKA +L+KR+ SY + + + ++ I I TVT TE EALLLE Sbjct: 1 MYDKAGTVIYVGKAKDLKKRLTSYFRAQVASRKTETLVKNIAQIDVTVTHTETEALLLEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK +PR+N+LLRDDKS+P I ++ P L HR + +G YFGPF + AV +T Sbjct: 61 NYIKLYQPRYNVLLRDDKSYPLIFLS-ADTHPRLAIHRGAKHEKGEYFGPFPNSYAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193 + LQ+ F +R C +SV+R+R+RPCL +QI RCSGPC +S E+Y V + FLSG Sbjct: 120 LALLQKLFPVRQCENSVYRNRSRPCLQYQIGRCSGPCVTGLVSDEEYQRQVDYVRLFLSG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--DCFSLYHNK 251 + + ++ M +A+ +E A RD++ A+ + + D + + Sbjct: 180 KDQQVLTQLISRMEEASKSLHFEDAARIRDQIQAVRRVTEQQFVSGDSEDLDVIGVAFDA 239 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLSE 307 LAC+ F G+ G+ ++F K + + ++++ F+ QFY + P ILL Sbjct: 240 GLACVHVLFIRQGKVLGSRSYFPKVPAGTELSEVVQTFVGQFYLQGSQGRTLPGEILLDF 299 Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367 EE LL S + G K++I +G++ + ++ A NA + T +LS + + +K Sbjct: 300 TLEEKELLASSLSELAGRKIQIQSRPRGDRARYLKLARTNASTALTTRLSQQSTIHQRMK 359 Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427 + K L R+E +D SH MG V VV NG V+++YR++N+ + + DD Sbjct: 360 ELAKILNLD-EINRMECFDISHTMGEQTVASCVVFDANGPVRSEYRRYNI--SGITPGDD 416 Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487 A M VL+RR+ + + ++ PDV+ +DGGKGQLS A V LN Sbjct: 417 YAAMSQVLKRRYGKALDEKK---------------IPDVIFIDGGKGQLSQAFDVFASLN 461 Query: 488 V---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 V + + ++ +AKG R AG+E F+ +GE L P L+ IQ +RD++H AIT Sbjct: 462 VPWDKQKPLLVGVAKGSDRKAGLETLFLAAEGEGFSLPPDSPALHLIQHIRDDSHNHAIT 521 Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR+RR K S L+ I GIGP R+++LL+ G ++ + +S E +A + IS+ +A K Sbjct: 522 GHRQRRSKVKNTSALEMIEGIGPKRRQILLKYMGGLQPLLNASVEEIAKVPSISQALAEK 581 Query: 603 IYNHFH 608 IYN Sbjct: 582 IYNALK 587 >gi|221632453|ref|YP_002521674.1| excinuclease ABC subunit C [Thermomicrobium roseum DSM 5159] gi|221155909|gb|ACM05036.1| excinuclease ABC, C subunit [Thermomicrobium roseum DSM 5159] Length = 625 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 200/619 (32%), Positives = 326/619 (52%), Gaps = 33/619 (5%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTCTEV 67 PGVY M D GRV+YVGKA +L++R++SY S ++ + ++SQI + T T Sbjct: 27 APGVYLMKDAQGRVIYVGKASSLRQRLRSYFSSHSSMDAKTRELVSQIADFEVIRTDTPT 86 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EAL+LE +IKR +PRFNI+LRDDK++P+I IT+ P + R YFGP+ S Sbjct: 87 EALILENELIKRYRPRFNIMLRDDKTYPFIRITN-EPFPRVIATRRIVRDGSRYFGPYPS 145 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 AV +T++ L+R F R+C + +R CL + I RC+GPC G +S E+Y + Sbjct: 146 AGAVHRTLDLLKRLFPYRACDIEITGTASRACLYYHIGRCAGPCIGAVSQEEYRGIIDNV 205 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSL 247 FL G + ++ M +A + ++E A RD L A+ H+ + + F + Sbjct: 206 VLFLEGRAEAVVARLQAAMEEAAERLEFERAARIRDELRAIQHVLQQQKIVTGTDESFDV 265 Query: 248 ----YHNKNLACIQTCFFHFGQNRGTCTFFLKTD-SESTNAQILSYFLRQFYTDKP-CPE 301 AC+Q F G+ G+ + + + IL+ F++Q+Y P Sbjct: 266 LAVAQSAGGDACVQIGFVRNGKLLGSEHYLMVGARIDDPPGAILTSFVQQYYAQASTVPP 325 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI----NAHRSHTQKLS 357 ++L ++ + + V++TVP G +R+++E N + + L+ Sbjct: 326 ELVLQHPLDDGETIAAWLAARRDGPVRLTVPDDGFRRELVEMIAKSAVQNLEQHRVRWLN 385 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 E + L++ + +P+RIE +D S + G + V MVV K+ YRKF + Sbjct: 386 DEQRTTLALEELADALGMDRLPRRIECFDVSQLQGTNVVASMVVFEHGKPKKSDYRKFQI 445 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 V+ QDD A +R + RR+ + + E+ ++ + PD+V++DGGKGQLS Sbjct: 446 KT--VEGQDDYAALREAVLRRYRRALSAEQ---------TEAWQALPDLVLIDGGKGQLS 494 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 AA+ L +L ++ + I ++AK + E + + E +VL L+ +QR+RDEA Sbjct: 495 AAREALVELGLD--LPIAALAKEHE-----ELYIPDQSEPIVLPRDSQALFLVQRVRDEA 547 Query: 538 HRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFA+T HR RR ++ S LDEI GIGP R+R LL+ FG+V+ I ++S E +A++ GIS Sbjct: 548 HRFAVTFHRARRTRSTIRSLLDEIPGIGPRRRRELLRRFGSVEGIRQASIEEIAAVPGIS 607 Query: 597 KKIACKIYNHFHKNTSHTP 615 + +A +I + + P Sbjct: 608 RALAERIKKEL--DEARAP 624 >gi|260903778|ref|ZP_05912100.1| excinuclease ABC subunit C [Brevibacterium linens BL2] Length = 619 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 198/620 (31%), Positives = 311/620 (50%), Gaps = 28/620 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVT 63 +P GVY+ D RV+YVGKA NL+ R+ SY + R + M+ ++ +TV Sbjct: 13 SIPTSAGVYKFRDPDRRVIYVGKAKNLRNRLNSYFSNPAQLHPRTSTMVHTAASVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE I PRFN++ RDDKS+PY+ IT ++P + R YFG Sbjct: 73 DTEVEALQLEWTWINEFNPRFNVMFRDDKSYPYLAITMNDEVPRAFITRGKRRKGVKYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFR---HRTRPCLLFQIKRCSGPCTGEISSEKY 180 PFA V A++ T++ L R F +R+C V+R RPCLL I +C+ PC G+IS E + Sbjct: 133 PFAQVWAIKDTLDLLLRAFPMRTCTAGVYRRAERSGRPCLLGYIDKCAAPCVGQISVEGH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + F+SG + M A + DYE A RD + AL + + + + + Sbjct: 193 KDLARSISDFMSGNTGRFISYRQKEMASAAEELDYERAARLRDEITALQKVLDKSAVVLS 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD- 296 D F+L + A +Q G+ RG + ++ + + A++ + +LRQ YT Sbjct: 253 VNADCDVFALVTEELEASVQVFHVRQGRIRGQRGWIIERSDDHSPAELTTDYLRQAYTGL 312 Query: 297 --KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P IL+ + LE +Q G +V + VP++GEK+ ++E NA + Q Sbjct: 313 DADAIPREILVDTVPADIESLESWLSEQRGSRVTVRVPERGEKKAVLETVAKNAKEALLQ 372 Query: 355 KLSTE----ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + LK+ + +LP P RIE D SH G + V +VV + K Sbjct: 373 HKLKRSSDLTTRSTALKEIQEYLSLPEAPLRIECIDISHTQGSNVVASLVVFEDGLVKKR 432 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YR F +H DD A M V+ RRFS+ ++ + + F P ++++D Sbjct: 433 DYRHFAIHGE--AATDDTASMYDVVSRRFSRYLEQ-----MSSDEPDERFGYRPSLLVVD 485 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 G Q++AA L L + + I+++ +AK + E + + ++L L+ + Sbjct: 486 GAGPQVAAATRALHDLGIVD-ISVVGLAKRLE-----EVWVPEDPFPVILPRNSEGLFLM 539 Query: 531 QRLRDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 QRLRDEAHRFAI+ HR +R KA S LD+I+G+G ++ LL+ FG+VK + +S E L Sbjct: 540 QRLRDEAHRFAISYHRSKRAKAMTSSVLDDISGLGESKRTALLRHFGSVKKVRAASIEEL 599 Query: 590 ASIEGISKKIACKIYNHFHK 609 ++GI + +A K+ + Sbjct: 600 CEVKGIGQALAEKVAAALAE 619 >gi|182624542|ref|ZP_02952325.1| excinuclease ABC, C subunit [Clostridium perfringens D str. JGS1721] gi|177910350|gb|EDT72731.1| excinuclease ABC, C subunit [Clostridium perfringens D str. JGS1721] Length = 620 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 197/619 (31%), Positives = 318/619 (51%), Gaps = 20/619 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 + +P+ PGVY M + G V+YVGKA L+ R++ Y S NH+ ++ M+ I + Sbjct: 7 QLKILPDKPGVYIMKNSLGEVIYVGKAKVLKNRVRQYFQNSKNHSEKVRAMVKNIAEFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK+ PR+NI L+DDK +P+I IT P +Y R+ + Sbjct: 67 IVTDSEMEALILECNLIKKYSPRYNIALKDDKFYPFIKITTNEDFPRVYVTRNFAKDGNR 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ + AV + + +++ F LR+C ++ TR CL + I C PC G IS Sbjct: 127 YFGPYTNGTAVYEVMGLIKKLFPLRTCKKAIVEGGEPTRACLNYHINLCKAPCAGYISKA 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235 +Y E + E L+G + ++ +K+ M +A + ++E A RDR+ A+ I Sbjct: 187 EYWEMIDEIINILNGTDTSIIKKLKLEMEKAAEELEFEKAAKIRDRILAIELISEKQKMF 246 Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D LY ++ C Q F G+ G F ++ S+ +++S F+ FY Sbjct: 247 TVKEGDEDFIDLYTDEKDGCAQVFFVREGKVTGREHFMIENISDDPVKEVISSFIASFYG 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350 P+ I + EE E+ L+E ++ G KV I VPK G+K+ +++ NA + Sbjct: 307 GTAQIPKTIYVPEEIEDQELIEKFLTEKRGSKVWIKVPKNGDKKNLLDMVRNNAKIMLDQ 366 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + + + ++ L + L +P RIE YD S+I G +VG MVV + Sbjct: 367 FKEKMVEEKELNKSALTELADVLGLDSLPARIEAYDISNIQGVDSVGTMVVFENGKAKNS 426 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVIL 469 YR+F + VK +D MR +L RRFS ++ + + + + F +PD++++ Sbjct: 427 DYRRFKIKS--VKGPNDYESMREILSRRFSHGLEEVNKIKERNLEYSKGKFCIFPDLIMM 484 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ++ A VLK +E I + + K K F E +++ ++ Sbjct: 485 DGGKGQVNIALEVLKDFGIE--IPVCGLVKDDKHRTRGIIF---NNEEILIRRGSGLMNL 539 Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 I R++DE HR+AIT HR R K+ +S L++I IG R+R LL FG++ I ++S E Sbjct: 540 ITRVQDEVHRYAITYHRSLRDKRTLHSILEDIPRIGEKRRRNLLMKFGSIDNIKKASMEE 599 Query: 589 LASIEGISKKIACKIYNHF 607 L GI K+ A I +F Sbjct: 600 LLDTPGIDKRAAESIKQYF 618 >gi|33152820|ref|NP_874173.1| excinuclease ABC subunit C [Haemophilus ducreyi 35000HP] gi|71153396|sp|Q7VKR0|UVRC_HAEDU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|33149045|gb|AAP96562.1| excinuclease ABC, subunit C [Haemophilus ducreyi 35000HP] Length = 612 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 204/620 (32%), Positives = 333/620 (53%), Gaps = 33/620 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+M D ++YVGKA +L+KR+ SY S + +I ++ I++I T+T Sbjct: 12 DVPHLPGVYRMYDANQAIIYVGKAKDLKKRLASYFRSQVASKKIEALVGNIHHIDTTITH 71 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N IK+ +P++N+LLRDDKS+PY+L+T KH+ P L R S + G YFGP Sbjct: 72 SETEALLLEHNYIKQHQPKYNVLLRDDKSYPYLLLT-KHQHPRLTAFRGSKKVAGEYFGP 130 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183 + +V AV +++N LQ+ F +R C D+ +++R+RPCL QI RC PC S ++Y Sbjct: 131 YPNVSAVRESLNLLQKIFPIRQCEDNYYKNRSRPCLQHQIGRCLAPCVTGYCSQQEYDNQ 190 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240 V + FL G + + + + + M A + D+E+A RD++ ++ +Q + Sbjct: 191 VKWVRLFLQGKDSQVIDYLMQKMEIAASELDFETAARFRDQIQSVRAVQEKQFVANQRLD 250 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296 +D S+ + LAC F G+ G +F K S + ++ F+ QFY Sbjct: 251 DLDIISIAYQSGLACAHILFIRQGKVLGNRAYFPKVPSHTDLTELADTFIGQFYLQLNQH 310 Query: 297 KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P I+L + E +L ++ + IT +G+K + + A NA + + + Sbjct: 311 RSIPNQIILDQPLTESNALAQLLTEQAGHKVTIITNHVRGDKSRYLALAQTNARAALSLQ 370 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L + LP I R+E +D SH MG V VV ENG +K+ YR+F Sbjct: 371 LKQSTTIHKRYDALKILLKLPTIK-RMECFDISHTMGSQTVASCVVFDENGPLKSDYRRF 429 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M L +R+ + + E+ PD++ +DGGKGQ Sbjct: 430 NIEG--ITGGDDYAGMEQALVKRYDKPLPIEK---------------IPDIIFIDGGKGQ 472 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQ 531 L+ A V +KL V +++ +I +AKG +R AG+E + + + + L + P L+ IQ Sbjct: 473 LNRALQVFEKLTVAWDKHKPLLIGVAKGAERKAGLETLIIGRLKKEIHLPIDSPALHLIQ 532 Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI+ HRK+R+KA S L+ I G+G R++ LL+ G ++ + ++ + Sbjct: 533 HIRDESHHHAISGHRKKRQKAFVESGLESIAGVGAKRRQALLKYLGGMQGVKSATLAEIE 592 Query: 591 SIEGISKKIACKIYNHFHKN 610 S+ GISK +A I++ H + Sbjct: 593 SVPGISKTLAGVIFDTLHNS 612 >gi|326622889|gb|EGE29234.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 588 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 208/602 (34%), Positives = 329/602 (54%), Gaps = 31/602 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D G V+YVGKA +L+KR+ SY SN + + +++QI +I TVT TE EALLLE Sbjct: 1 MYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTVTHTETEALLLEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YFGPF + AV +T Sbjct: 61 NYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193 + LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y + V + FLSG Sbjct: 120 LALLQKIFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYAQQVEYVRLFLSG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NRMDCFSLYHNK 251 + + ++ M +A+ +E A RD++ A+ + + +D + + Sbjct: 180 KDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTERQFVSNAGDDLDVIGVAFDA 239 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSE 307 +AC+ F G+ G+ ++F K + +++ F+ QFY + P ILL Sbjct: 240 GMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQMRTLPGEILLDF 299 Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367 + +LL S + G ++ + +G++ + ++ A NA + KLS + + L Sbjct: 300 NLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALITKLSQQSTITQRLT 359 Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427 LP I R+E +D SH MG V VV NG ++ +YR++N+ + DD Sbjct: 360 ALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNI--AGITPGDD 416 Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487 A M VL RR+ + I+ + PDV+++DGGKGQL+ A+ V +L+ Sbjct: 417 YAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQLAQAKAVFAELD 461 Query: 488 V---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 V ++R ++ +AKG R AG+E F +GE L P L+ IQ +RDE+H AI Sbjct: 462 VPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIG 521 Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A + GIS+ +A K Sbjct: 522 GHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEK 581 Query: 603 IY 604 I+ Sbjct: 582 IF 583 >gi|168216567|ref|ZP_02642192.1| excinuclease ABC, C subunit [Clostridium perfringens NCTC 8239] gi|182381551|gb|EDT79030.1| excinuclease ABC, C subunit [Clostridium perfringens NCTC 8239] Length = 620 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 195/619 (31%), Positives = 318/619 (51%), Gaps = 20/619 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 + +P+ PGVY M + G V+YVGKA L+ R++ Y S NH+ ++ M+ I + Sbjct: 7 QLKILPDKPGVYIMKNSLGEVIYVGKAKVLKNRVRQYFQNSKNHSEKVRAMVKNIAEFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK+ PR+NI L+DDK +P+I IT P +Y R+ + Sbjct: 67 IVTDSEMEALILECNLIKKYSPRYNIALKDDKFYPFIKITTNEDFPRVYVTRNFAKDGNR 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ + AV + + +++ F LR+C ++ TR CL + I C PC G IS + Sbjct: 127 YFGPYTNGTAVYEVMGLIKKLFPLRTCKKAIVEGGEPTRACLNYHINLCKAPCAGYISKD 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235 +Y E + E L+G + ++ + + M +A + ++E A RDR+ A+ I Sbjct: 187 EYWEMIDEIINILNGTDTSIIKNLKLEMEKAAEELEFEKAAKIRDRILAIELISEKQKMF 246 Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D LY ++ C Q F G+ G F ++ + +++S F+ FY Sbjct: 247 TVKEGDEDFIDLYTDEKDGCAQVFFVREGKVTGREHFMIENIGDDPVEEVISSFIASFYG 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350 P+ I + EE E+ L+E ++ G KV I VPK+G+K+ +++ NA + Sbjct: 307 GTAQIPKTIYVPEEIEDQELIEKFLTEKRGSKVWIKVPKKGDKKNLLDMVRNNAKIMLDQ 366 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + + + ++ L + L +P RIE YD S+I G +VG MVV + Sbjct: 367 FKEKMVEEKELNKSALTELADVLGLDSLPARIEAYDISNIQGVDSVGTMVVFENGKAKNS 426 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVIL 469 YR+F + VK +D MR +L RRFS ++ + + + + F +PD++++ Sbjct: 427 DYRRFKIKS--VKGPNDYESMREILSRRFSHGLEEINKIKERNLEYSKGKFCIFPDLIMM 484 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ++ A VLK +E I + + K K F E +++ ++ Sbjct: 485 DGGKGQVNIALEVLKDFGIE--IPVCGLVKDDKHRTRGIIF---NNEEILIRRGSGLMNL 539 Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 I R++DE HR+AIT HR R K+ +S L++I IG R+R LL FG++ I ++S E Sbjct: 540 ITRVQDEVHRYAITYHRSLRDKRTLHSILEDIPRIGEKRRRNLLMKFGSIDNIKKASMEE 599 Query: 589 LASIEGISKKIACKIYNHF 607 L GI K+ A I +F Sbjct: 600 LLDTPGIDKRAAESIKQYF 618 >gi|331002139|ref|ZP_08325658.1| UvrABC system protein C [Lachnospiraceae oral taxon 107 str. F0167] gi|330411233|gb|EGG90649.1| UvrABC system protein C [Lachnospiraceae oral taxon 107 str. F0167] Length = 611 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 201/618 (32%), Positives = 314/618 (50%), Gaps = 30/618 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M D ++YVGKA +L+ R++ Y S+ + + +I M+S+I + Sbjct: 8 ELKKLPGQPGVYIMHDKKDEIIYVGKAISLKNRVRQYFQSSKDKSPKIKQMVSKIERFEY 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK +PR+N +LRDDK++PYI +T K + P L R + Sbjct: 68 IVTDSELEALVLENNLIKENRPRYNTMLRDDKTYPYIKLTVKEEYPRLQMVRQIKKDKNR 127 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGPF+S +AV TIN L R + LR+C+ ++ + RPCL + I +C PC IS E Sbjct: 128 YFGPFSSGNAVRDTINLLNRVYKLRTCSRNLPKDIGAERPCLDYFIHQCDAPCQNYISKE 187 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y + V EA KFLSG + KI M + + + +E A RD L ++ HI Sbjct: 188 DYNKNVVEALKFLSGDFDPIINKIREEMERLSSELKFEDAAKQRDLLNSVLHITQKQKIT 247 Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D ++ ++ A +Q F G+ G +++ + IL F++QFY Sbjct: 248 SDDIKDRDIIAMARDERDAVVQVFFIREGKMVGREHHYIQVAMDDEKVDILESFIKQFYA 307 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351 P P I+ E ++ L+ + G KV I VPK+G K K++E A NA Sbjct: 308 GTPFVPSQIMSQYELKDNKLITEWLSSKRGSKVNIIVPKKGSKEKLVELAKKNAEIVLTK 367 Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E +K+ + +L + R+E YD S+I G +VG MVV K+ Sbjct: 368 DREKLQRQEARSVGAVKEIEELLSLSGLS-RMEAYDISNISGVQSVGSMVVYENGIPKKS 426 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YRKF + V +D A M+ VL RRF I + F PD++++D Sbjct: 427 DYRKFKIKT--VIGPNDYASMKEVLTRRFENGIDKND----------TGFNKLPDIILMD 474 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GG+GQ++ VL++ + I + + K + ++ I Sbjct: 475 GGRGQVNICLQVLEEFGL--NIPVCGMVKDDNHRTRG---LYYNNVEIPIDTHSQGFLLI 529 Query: 531 QRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DEAHRFAI HR R K S LD+I GIG +R++ L++ F ++ I +SP+ L Sbjct: 530 TRIQDEAHRFAIEYHRSLRSKTQVKSILDDIEGIGTVRRKALMKHFKDIENIKNASPDEL 589 Query: 590 ASIEGISKKIACKIYNHF 607 S++G++KK A +Y F Sbjct: 590 MSVDGMNKKSAKAVYEFF 607 >gi|16272031|ref|NP_438230.1| excinuclease ABC subunit C [Haemophilus influenzae Rd KW20] gi|260580639|ref|ZP_05848466.1| excinuclease ABC, C subunit [Haemophilus influenzae RdAW] gi|1174920|sp|P44489|UVRC_HAEIN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|1573005|gb|AAC21735.1| excinuclease ABC, subunit C (uvrC) [Haemophilus influenzae Rd KW20] gi|260092701|gb|EEW76637.1| excinuclease ABC, C subunit [Haemophilus influenzae RdAW] Length = 609 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 210/616 (34%), Positives = 338/616 (54%), Gaps = 32/616 (5%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 PGVY+M D +V+YVGKA +L+KR+ SY N + + +++ I++I T+T +E Sbjct: 13 HEPGVYRMYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVASIHHIDTTLTSSET 72 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EALLLE N IK +PR+N+LLRDDKS+P+IL+T K + + +R S G YFGP+ Sbjct: 73 EALLLEHNFIKLYQPRYNVLLRDDKSYPFILLT-KERHQRITSYRGSKKFAGEYFGPYPH 131 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHE 186 AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCS PC +S E+Y + V Sbjct: 132 AGAVRETLSLLQKLFPVRQCENSVYSNRSRPCLQYQIGRCSAPCVQGYVSDEEYNQQVEL 191 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMD 243 A+ FL G + + + + M QA+ D+E A +RD++ A+ + + MD Sbjct: 192 ARLFLQGKDQQVLDYLIGKMEQASRNLDFEQAARYRDQIQAVRSVIEKQFVSNERLDDMD 251 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPC 299 S+ + LAC+Q F G+ G ++F K + + +++ F+ QFY + Sbjct: 252 IMSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTETFVGQFYLQGHQGRSI 311 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P +I++ + E S LE +Q G KV I +G+K K ++ A +NA + +L Sbjct: 312 PNSIIVDRQLAEKSELEQLLSEQAGRKVTIQESVKGDKSKYLQLAQVNAKAALNVQLKQS 371 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + LP I R+E +D SH MG V VV + G +K+ YR+FN+ Sbjct: 372 SRMSERYQALCDLLNLPKIK-RMECFDISHTMGNQTVASCVVFNKEGPLKSDYRRFNIEG 430 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A M VL++R+ + ++ ++ PD++ +DGGKGQL+ A Sbjct: 431 --ITGGDDYAAMEQVLQKRYERDLEEDK---------------IPDIIFIDGGKGQLNRA 473 Query: 480 QGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535 V + L V +NR +I +AKG R AG E + K+ + L L+ IQ +RD Sbjct: 474 LNVFQHLQVKWDKNRPHLIGVAKGVDRRAGQEVLIISKQDREIHLPDDSLALHLIQHIRD 533 Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E+H AI+ HRK+R+KA S L+ I G+G R++ LL+ G ++ + +++ + +AS+ G Sbjct: 534 ESHNHAISGHRKKRQKAFTQSGLETIEGVGAKRRQALLKYLGGLQGVKKATLDEIASVPG 593 Query: 595 ISKKIACKIYNHFHKN 610 IS K+A +I+ + Sbjct: 594 ISPKLAERIFETLKND 609 >gi|319775000|ref|YP_004137488.1| UvrABC system protein C [Haemophilus influenzae F3047] gi|329123098|ref|ZP_08251668.1| excinuclease ABC subunit C [Haemophilus aegyptius ATCC 11116] gi|317449591|emb|CBY85796.1| UvrABC system protein C [Haemophilus influenzae F3047] gi|327471653|gb|EGF17095.1| excinuclease ABC subunit C [Haemophilus aegyptius ATCC 11116] Length = 609 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 209/616 (33%), Positives = 336/616 (54%), Gaps = 32/616 (5%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 PGVY+M D +V+YVGKA +L+KR+ SY N + + +++ I++I +T +E Sbjct: 13 HEPGVYRMYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVASIHHIDTMLTSSET 72 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EALLLE N IK +PR+N+LLRDDKS+P+IL+T K + P + +R S G YFGP+ Sbjct: 73 EALLLEHNFIKLYQPRYNVLLRDDKSYPFILLT-KERHPRITSYRGSKKFAGEYFGPYPH 131 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHE 186 AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCS PC +S E+Y + V Sbjct: 132 AGAVRETLSLLQKLFPVRQCENSVYSNRSRPCLQYQIGRCSAPCVQGYVSDEEYNQQVEL 191 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMD 243 A+ FL G + + + + M QA+ D+E A +RD++ A+ + + MD Sbjct: 192 ARLFLQGKDQLVLDYLIGKMEQASRNLDFEQAARYRDQIQAVRSVIEKQFVSNERLDDMD 251 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPC 299 S+ + LAC+Q F G+ G ++F K + + +++ F+ QFY + Sbjct: 252 IMSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTETFVGQFYLQGHQGRSI 311 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P +I++ + E S LE Q G KV I +G+K K ++ A +NA + +L Sbjct: 312 PNSIIVDRQLAEKSELEQLLTDQAGRKVTIQESVKGDKSKYLQLAQVNAKAALNVQLKQS 371 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + LP I R+E +D SH MG V VV + G +K+ YR+FN+ Sbjct: 372 SRMSERYQALCDLLNLPEIK-RMECFDISHTMGNQTVASCVVFNQEGPLKSDYRRFNIEG 430 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A M L++R+ + ++ ++ PD++ +DGGKGQL+ A Sbjct: 431 --ITGGDDYAAMEQALQKRYERDLEEDK---------------IPDIIFIDGGKGQLNRA 473 Query: 480 QGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535 V + L V +NR +I +AKG R AG E + K+ + L L+ IQ +RD Sbjct: 474 LNVFQHLQVKWDKNRPHLIGVAKGVDRRAGQEVLIISKQDREIHLPDDSLALHLIQHIRD 533 Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E+H AI+ HRK+R+KA S L+ I G+G R++ LL+ G ++ + +++ + +AS+ G Sbjct: 534 ESHNHAISGHRKKRQKAFTQSGLETIEGVGAKRRQALLKYLGGLQGVKKATLDEIASVPG 593 Query: 595 ISKKIACKIYNHFHKN 610 IS K+A +I+ + Sbjct: 594 ISLKLAERIFETLKND 609 >gi|289578945|ref|YP_003477572.1| excinuclease ABC, C subunit [Thermoanaerobacter italicus Ab9] gi|289528658|gb|ADD03010.1| excinuclease ABC, C subunit [Thermoanaerobacter italicus Ab9] Length = 615 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 202/618 (32%), Positives = 329/618 (53%), Gaps = 18/618 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 + +PE PGVY M D G ++YVGKA L+ R++ Y N ++ M+S +++ + Sbjct: 6 KLKLLPEKPGVYIMKDKKGEIIYVGKAIVLKNRVRQYFQNKENQLPKVKVMLSHVSDFEY 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT TE+EAL+LE N+IK+ KPR+N+LL+DDK++PYI +T + P + R Sbjct: 66 IVTDTELEALMLECNLIKKYKPRYNVLLKDDKNYPYIKVTVNEEYPRIMFTRRIEPDGAK 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSE 178 YFGP++S AV +TI +++ F +R+C ++ + + R CL + I CS PCT +I+ E Sbjct: 126 YFGPYSSAFAVRETIKLVRKMFPIRTCNRNIEKDMRKVRECLYYHIGLCSAPCTNKINKE 185 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y + V +A FL G L +K+ +M +A + +E A RD++ A+ + Sbjct: 186 DYRKLVDQAVLFLDGKRDWLVQKLKEDMQKAAEELRFEEAARIRDQIFAIESTSEKQKVV 245 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D S+ ++CIQ F G+ G +++K +I+S F++QFY Sbjct: 246 SVGEDEQDIISIARGAGISCIQVFFVRDGKLSGREHYYMKNTEGMERGEIISSFIKQFYE 305 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--H 352 P P+ I+ E +E LL ++ G KV IT+P +G+K+++++ NA + + Sbjct: 306 GAPYIPKEIITDVELDERELLSEWLSQKRGNKVFITIPMRGKKKELVDMVYQNALEALKN 365 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + EIS + + +K L + RIE YD S+ G VG MVV + K+QY Sbjct: 366 DISIREEISKDQAVLELSKLVGLDYAR-RIEAYDISNTRGQDNVGAMVVFVDGKPKKSQY 424 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEY-SFPSWPDVVILDG 471 RKFN+ V+ QDD MR V+ERRF I+ +E + ++ F PD++++DG Sbjct: 425 RKFNVK--YVEGQDDYESMREVIERRFLHGIEEKELIEKGELEENKAKFAEMPDLILIDG 482 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 G G ++A VL L + I + + K K V + + M I Sbjct: 483 GIGHVNAVLQVLYGLGIA--IPVYGMVKDSKHRTRG---LVSPQGEIDIPMTTKAFRLIA 537 Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 ++++EAHRFAIT H++++ K S L I GIG R + L +F +++ I R+S E L Sbjct: 538 QIQEEAHRFAITFHKEKQSKRFKSELLNIPGIGEKRAKALYDAFNSIEEIKRASVEDLKK 597 Query: 592 IEGISKKIACKIYNHFHK 609 +EG+++K A +Y +F K Sbjct: 598 VEGMNEKAAQAVYEYFRK 615 >gi|114563814|ref|YP_751327.1| excinuclease ABC subunit C [Shewanella frigidimarina NCIMB 400] gi|119367834|sp|Q07ZS6|UVRC_SHEFN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|114335107|gb|ABI72489.1| Excinuclease ABC subunit C [Shewanella frigidimarina NCIMB 400] Length = 610 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 200/616 (32%), Positives = 328/616 (53%), Gaps = 28/616 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D +V+YVGKA +L+KR+ SY N + ++S I++I TV Sbjct: 11 LKNVTSAPGVYRMYDKHQQVIYVGKAKDLKKRLSSYFRVNIANVKTQALVSHIDHIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E +ALLLE + IK+ P++N+LLRDDKS+PYIL++ HK P L HR +G YF Sbjct: 71 THSETDALLLENDYIKQYMPKYNVLLRDDKSYPYILLS-GHKHPRLAYHRGPKREKGHYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + AV ++++ +Q+ F +R C D ++ R+RPCL +Q+ RCS PC G +S ++Y E Sbjct: 130 GPYPNGGAVRESLHLIQKLFPIRQCDDLYYKSRSRPCLQYQLDRCSAPCVGIVSDDEYSE 189 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240 V A FL G + + ++ M A + +YE A +RD++ AL + + + Sbjct: 190 QVKLAGLFLRGKDKQVISQLVAKMETAAIDMEYERAAQYRDQITALRRVAEQQEVSNHKG 249 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD---- 296 MD + + +AC F G+ G+ +++ +E+ ++LS FL QFY + Sbjct: 250 DMDVIGVDYASGIACFHLLFIRDGKIFGSRSYYPSVPAETEIEEVLSSFLGQFYLNADIQ 309 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 + P+ ++LS + + L+ S K ++ +G++ + A+ NA + KL Sbjct: 310 RTIPKEVILSHHFDGITELQASIEHALDKKFELKTQVRGDRANFLRLAMTNASNAVATKL 369 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 S + + + + + L KR+E +D SH MG S V VV G K YR++N Sbjct: 370 SHKNTVEQRFQLLEEALELNEPIKRMECFDISHTMGESTVASCVVFNREGPHKADYRRYN 429 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + DD A M + RRF ++ N + PD+V +DGG GQL Sbjct: 430 I--TGITGGDDYAAMEQAISRRFDKIDNNGK---------------VPDLVFIDGGIGQL 472 Query: 477 SAAQGVLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRL 533 AQ ++ + +N+++ +I + KG R AG+E F V E + P + + + Sbjct: 473 RVAQTIVDEKCVNIDHPPLLICVTKGEGRKAGLETFTVGGSEQTFEVASDSPAFHLMLHI 532 Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDE+HRFAIT HR +R+K S L+ I G+GP R++ LLQ G ++ + +S L + Sbjct: 533 RDESHRFAITGHRNKRQKTRNTSTLESIAGVGPKRRKALLQHLGGIQEVKGASVAELTKV 592 Query: 593 EGISKKIACKIYNHFH 608 GIS ++A I++ Sbjct: 593 PGISLEMAQTIHDALR 608 >gi|313895929|ref|ZP_07829483.1| excinuclease ABC, C subunit [Selenomonas sp. oral taxon 137 str. F0430] gi|312975354|gb|EFR40815.1| excinuclease ABC, C subunit [Selenomonas sp. oral taxon 137 str. F0430] Length = 608 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 189/618 (30%), Positives = 309/618 (50%), Gaps = 38/618 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 + +P+ PGVY M D G+++YVGKA L+ R++ Y S+ N ++ M+S + + Sbjct: 8 KLKLLPDTPGVYIMKDERGKIIYVGKAIVLKNRVRQYFQSSRNQAPKVRAMVSHVADFET 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T EVE+L+LEAN+IK+ +PR+NI L+DDKS+PY+ +T + P ++ R Sbjct: 68 IMTANEVESLILEANLIKKHRPRYNIRLKDDKSYPYVKVTMQEDFPRVFITRRVLRDGAR 127 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGP+ +V A+ ++ L+R F LR+C + RPCL + IKRC PC +++ E Y Sbjct: 128 YFGPYTNVTALRDSLKLLKRLFPLRTCR----KMPERPCLEYHIKRCLAPCVDKVTKEDY 183 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + FL G +++ ++ + M A +E+A RD+L ++ + + Sbjct: 184 AAMIRAVLLFLEGRTDDVERELEQRMQLAAEAYHFETAARLRDQLVSVRKAAERQNIVTG 243 Query: 241 RMDCFS--LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D + + C+Q F G+ G F L+ E + +L FL Q+Y Sbjct: 244 AGDQDAVGMARAGAGVCVQIFFIRGGKMIGREHFLLRGSDEERDEDVLRAFLEQYYNAAT 303 Query: 299 -CPENILLSEEA---EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350 P +LL + E + K+ G +V + P++G KR I+ A NA Sbjct: 304 FVPREVLLPLDIGAAERAVIERWLADKKGGGRVALLTPQRGTKRDIVVMATGNARKFLAD 363 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 T++ + + +++ + L P R+E +D SH G V MVV K+ Sbjct: 364 EETRRALADEQNMGAVEELGRYLGLKKAPYRMECFDISHNQGQETVASMVVFEGGMPKKS 423 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YR+F + + DD MR V RR+ L E PD++I+D Sbjct: 424 DYRRFKIRSAEG-KPDDFLSMREVTTRRYVGLPAEE----------------LPDLIIID 466 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQLS+A +++ + + ++ +AK + F + E + L R LY + Sbjct: 467 GGKGQLSSALEIIRGAAGHSAVPVVGLAKQFEL-----IFVEGESEPVELPRRSDALYLV 521 Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 QR+RDEAHRFAIT HR R K+ S LD I G+GP R++ L + FGT++ + +S + L Sbjct: 522 QRIRDEAHRFAITYHRNLRGKRNLVSVLDHIVGVGPKRRQALREHFGTIEKMKAASVDEL 581 Query: 590 ASIEGISKKIACKIYNHF 607 S+ G+++ A +Y+ F Sbjct: 582 VSVRGMNRPAAEAVYHFF 599 >gi|229820663|ref|YP_002882189.1| excinuclease ABC, C subunit [Beutenbergia cavernae DSM 12333] gi|259710335|sp|C5BV40|UVRC_BEUC1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|229566576|gb|ACQ80427.1| excinuclease ABC, C subunit [Beutenbergia cavernae DSM 12333] Length = 693 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 194/658 (29%), Positives = 318/658 (48%), Gaps = 52/658 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 ++P+ PGVY+ D GRV+YVGKA +L+ R+ SY + R M++ +++ +TV Sbjct: 13 EIPDAPGVYRFRDPHGRVVYVGKAKSLRSRLSSYFQDLSALHPRTQQMVTTASSVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE + IK PRFN+ RDDKS+PY+ +T ++P + R + YFG Sbjct: 73 GTEVEALQLEYSWIKEFDPRFNVKYRDDKSYPYLAVTMGEEVPRVQVMRGAKRKGTRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180 P+ A+ +T++ L R F +R+C+ V++ RPCLL I +CS PC G IS E + Sbjct: 133 PYGHAWAIRETVDLLLRVFPVRTCSSGVYKRAAASGRPCLLGYIDKCSAPCVGRISVEDH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + + F++G + ++ M A+ + D+E A RD + AL + N + Sbjct: 193 RDLAEDFCSFMAGESGVFLRRLESEMAAASAELDFERAARVRDDINALRRVVEKNAVVLA 252 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D F+L ++ +Q G+ RG + + + + ++ L+Q Y Sbjct: 253 DGTDADVFALAADELEVSVQVFHVRGGRVRGQRGWVTERVEDLDDGALVERLLQQVYGPY 312 Query: 298 P-----------CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 P +L+ ++ L G +V + +P++GEKR + E Sbjct: 313 ATEKGPDGGATGVPREVLVPALPDDAVELAEWLSTLRGSRVSLRIPQRGEKRALAETVRT 372 Query: 347 NAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVV 402 NA ++ + S L + ++ L P RIE YD S + G VG MVV Sbjct: 373 NAQQALALHKTRRAGDLTSRSRALSELQEELGLAESPLRIECYDISTLQGTHQVGSMVVF 432 Query: 403 GENGFVKNQYRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKNEE-------------- 447 + K++YR+F + D + +DD M V+ RRF + + + Sbjct: 433 EDGLARKSEYRQFVVRGADGQGARDDTEAMHEVITRRFRRYLAQRDVGVAGGGSGEVPAE 492 Query: 448 --------NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAK 499 + F P++V++DGG Q++AAQ L +L V + + ++ +AK Sbjct: 493 DDDGVAIAGPVDPETGRPARFAYPPNLVVVDGGPPQVAAAQRALDELGVSD-VALVGLAK 551 Query: 500 GPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLD 558 + E + + LVL LY +QR+RDEAHRFAIT HRKRR K S LD Sbjct: 552 RLE-----EVWLPGEEYPLVLPRASEGLYLLQRVRDEAHRFAITHHRKRRGKSMTRSTLD 606 Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616 ++ G+GP R+ LLQ+FG+V+ I ++PE +A++ G ++ A ++ + T Sbjct: 607 DVPGLGPSRQAALLQAFGSVRRIRAATPEEIAAVPGFGRRTAEQVLAALAPSPDDATT 664 >gi|260587221|ref|ZP_05853134.1| excinuclease ABC subunit C [Blautia hansenii DSM 20583] gi|331083542|ref|ZP_08332653.1| UvrABC system protein C [Lachnospiraceae bacterium 6_1_63FAA] gi|260542416|gb|EEX22985.1| excinuclease ABC subunit C [Blautia hansenii DSM 20583] gi|330403753|gb|EGG83305.1| UvrABC system protein C [Lachnospiraceae bacterium 6_1_63FAA] Length = 620 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 199/622 (31%), Positives = 322/622 (51%), Gaps = 20/622 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRF 60 +++P PGVY M D ++YVGKA +L+ R++ Y + + + M+ QI + Sbjct: 7 ELKKLPSLPGVYIMHDEQDAIIYVGKAISLKNRVRQYFQKSRNLGIKKEQMVEQIARFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE+N+IK P++N +L+DDK++P+I +T P + R + Sbjct: 67 IVTDSELEALVLESNLIKEHCPKYNTMLKDDKNYPFIKVTAGEAFPRIMTARSMKKDKSK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV+ I ++ + LR+C ++ R + RPCL + IK+C PC G I+ Sbjct: 127 YFGPYTSAGAVKDVIELTRKLYHLRTCNRNLPRDIGKERPCLYYHIKQCDAPCQGYITEA 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y + V E FL+G + + ++ M +A+ K ++E A +RD + ++ I Sbjct: 187 AYQKQVEELLDFLNGNHKKILTQLEGKMYEASEKMEFEDAAQYRDLIQSVKKIGERQKIT 246 Query: 239 YNR---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D + A +Q F G+ G F++K+ ILS FL+QFY Sbjct: 247 DHPGEDKDIIAAAMEDADAVVQVFFVRDGKLIGRDHFYMKSAPGENRKGILSSFLKQFYA 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350 P P+ I+L EE E+ L+ + G KV+I+VPK+G K K++E A NA + Sbjct: 307 GTPFIPKEIMLQEEVEDMELIAKWLESRKGKKVRISVPKKGTKEKLVEMAYHNAKLVLRQ 366 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E +K+ L +R+E YD S+I G +VG MVV + ++ Sbjct: 367 DKERIKREEGRTIGAVKEIEALLGLS-GIQRMEAYDISNISGFQSVGSMVVYEKGKPKRS 425 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YRKF + V+ +D A M VL RRF + E + + SF +PD++++D Sbjct: 426 DYRKFKIKS--VQGPNDYASMEEVLTRRFVHGMDEREERKQQLEDEFGSFTRFPDLILMD 483 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ++ A VL+KL + I + + K K + + ++ I Sbjct: 484 GGKGQVNIALEVLEKLQLT--IPVCGMVKDDKHRTRG---LYYNNQEIPISRDSEGFKLI 538 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DEAHRFAI HR R K +S LD+I GIG R++ L++ F + I +S ETL Sbjct: 539 TRVQDEAHRFAIEYHRSLRSKGQVHSVLDDIPGIGETRRKALMRHFKGLDGIREASVETL 598 Query: 590 ASIEGISKKIACKIYNHFHKNT 611 ++IE +++K A ++Y+ FHK Sbjct: 599 SNIESMNEKAARQVYDFFHKKE 620 >gi|170719186|ref|YP_001784329.1| excinuclease ABC subunit C [Haemophilus somnus 2336] gi|189038060|sp|B0UT80|UVRC_HAES2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|168827315|gb|ACA32686.1| excinuclease ABC, C subunit [Haemophilus somnus 2336] Length = 609 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 212/619 (34%), Positives = 344/619 (55%), Gaps = 32/619 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY+M D G+V+YVGKA +L+KR+ SY +N ++ + + ++S I++I T+T Sbjct: 10 NVTHQPGVYRMFDEKGQVIYVGKAKDLKKRLSSYFRTNLNSKKTSALVSHIHSIETTITA 69 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N IK +PR+N+LLRDDKS+PYIL+T K + P + HR S +QG YFGP Sbjct: 70 SETEALLLEHNYIKAFQPRYNVLLRDDKSYPYILLT-KERHPRITSHRGSKKVQGEYFGP 128 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEF 183 + AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCSGPC +S E+Y + Sbjct: 129 YPHAGAVRETLSLLQKLFPIRQCENSVYNNRSRPCLQYQIGRCSGPCIDGLVSDEEYQQQ 188 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240 V A+ FL G + + E + + M QA+++ ++E A RD++ A+ + + Sbjct: 189 VDFARLFLQGKDQQVLEHLIKKMEQASMQLNFEQAAYFRDQIQAIRAVIEKQFVSNERLD 248 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296 MD ++ + +AC+Q F G+ G ++F K + + +++ F+ QFY Sbjct: 249 DMDILAIAYQLGIACVQVLFIRQGKVLGNRSYFPKVPANTDLSELTETFVGQFYLQGHQG 308 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 + P I++ E LE+ +Q G KV I +G K K + A +NA + +L Sbjct: 309 RIIPSTIIVDHVLNEKHELEVLLTEQAGRKVNIQDNVKGNKSKFLHLAQMNAQAALVTQL 368 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 Q + + +L I R+E +D SH MG + VV G +K+ YR+FN Sbjct: 369 KQANLIQERYQALQELLSLTTIK-RMECFDISHTMGEQTIASCVVFDTEGPLKSDYRRFN 427 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + + DD A M L +R+ + ++NE+ PD++ +DGGKGQL Sbjct: 428 I--SGITAGDDYAAMEQALLKRYDRPLENEK---------------IPDIIFIDGGKGQL 470 Query: 477 SAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQR 532 + A V +LNV +N+ +I +AKG R AG+E + K+ + + L L+ IQ Sbjct: 471 NRALQVFAQLNVSWDKNKPLLIGVAKGVDRKAGLETLIISKQNKEVNLLPDSLALHLIQH 530 Query: 533 LRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+H AI HRK+R++A S L+ I G+G R++ LL+ G ++ + ++ ++S Sbjct: 531 IRDESHYHAIGGHRKKRQQAFTQSGLEAIKGVGAKRRQALLKYLGGMQGVKNATLAEISS 590 Query: 592 IEGISKKIACKIYNHFHKN 610 + GIS +A +IY Sbjct: 591 VPGISAALAERIYETLRSE 609 >gi|261252641|ref|ZP_05945214.1| excinuclease ABC subunit C [Vibrio orientalis CIP 102891] gi|260936032|gb|EEX92021.1| excinuclease ABC subunit C [Vibrio orientalis CIP 102891] Length = 609 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 207/619 (33%), Positives = 327/619 (52%), Gaps = 31/619 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M + V+YVGKA +L+KR+ SY + + ++S I+ I TV Sbjct: 10 LKTVTNQPGVYRMYNAEAVVIYVGKAKDLKKRLSSYFRVKVDSEKTRALVSNIDKIDVTV 69 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EAL+LE N IK+ P++N+LLRDDKS+P+I ++ HK P L HR + +G YF Sbjct: 70 THTETEALILEHNYIKQYLPKYNVLLRDDKSYPFIFVS-GHKHPRLSMHRGAKKRKGEYF 128 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYM 181 GP+ AV +T++ LQ+ F +R C D+V+ +RTRPCL++QI RC+ PC IS E+Y Sbjct: 129 GPYPDSGAVRETLHLLQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAAPCVSSVISDEEYA 188 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 E V + FL G + + + M QA+ +E A RD++ A+ +Q + Sbjct: 189 ELVDLVRLFLQGKDQQVLSSLVEKMEQASQSLRFEQAAKFRDQIQAIRRVQEQQFVSEDS 248 Query: 242 MDCF---SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 MD +ACI G+ G+ + F K + +T+ ++ FL Q+Y Sbjct: 249 MDDMDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPNSTTSQEVFYSFLSQYYLSHN 308 Query: 299 ----CPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 P I+L+ EET LE + G +V+ V G + + ++ + NA + T Sbjct: 309 EARTVPTKIILNHGLVEETKSLEEALSDIAGRRVQFHVNPTGTRGRYLKLSNTNALTAIT 368 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 K++ +++ K+ + + I R+E +D SH MG S + VV G VK +YR Sbjct: 369 TKINHKMTISQRFKELRELLEMESIT-RMECFDISHTMGESTIASCVVFNHEGPVKQEYR 427 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ + + DD A M LERR+S+ ++ E+ PD+V +DGGK Sbjct: 428 RYNI--SGITGGDDYAAMGQALERRYSKQLEVEK---------------IPDIVFIDGGK 470 Query: 474 GQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GQL+ A ++ + + R +I IAKG R G+E +G+ L P L+ +Q Sbjct: 471 GQLNRAHEIISQYWGDWPKRPHLIGIAKGVTRKPGLETLITVEGDEFNLPSDAPALHLMQ 530 Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HR +R K S L+ I G+GP R++ LL+ G ++ + R+S E +A Sbjct: 531 HIRDESHNHAIAGHRAKRGKTRRTSALEGIEGVGPKRRQALLKYMGGLQELKRASVEEIA 590 Query: 591 SIEGISKKIACKIYNHFHK 609 + GIS +A IY + Sbjct: 591 KVPGISFSLAENIYQALKQ 609 >gi|84394222|ref|ZP_00992950.1| excinuclease ABC subunit C [Vibrio splendidus 12B01] gi|84375136|gb|EAP92055.1| excinuclease ABC subunit C [Vibrio splendidus 12B01] Length = 610 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 202/619 (32%), Positives = 330/619 (53%), Gaps = 31/619 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + E PGVY+M + V+YVGKA NL+KR+ SY + + ++S I+ I TV Sbjct: 11 LKTVTEQPGVYRMYNAEAVVIYVGKAKNLKKRLSSYFRKKVDSEKTRALVSNIDKIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EAL+LE N IK+ P++N+LLRDDKS+PYI I+ HK P L HR + +G YF Sbjct: 71 THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFIS-GHKHPRLSMHRGAKKKKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYM 181 GP+ AV +T++ +Q+ F R C D+V+ +RTRPCL++QI RC+ PC IS E+Y Sbjct: 130 GPYPDSGAVRETLHLIQKIFPARQCEDTVYANRTRPCLMYQIGRCTAPCVSSIISDEEYS 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 E + + FL G + + E + M++A+ + +E A RD++ A+ +Q + Sbjct: 190 ELIDYVRLFLQGKDKLVLETLIDKMDKASQELRFEQAAAFRDQIQAIRRVQEQQYVSDDS 249 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY---- 294 MD +ACI G+ G+ + F K + + ++ S FL Q+Y Sbjct: 250 MEDMDVLGFAQENGVACIHILMIRQGKVLGSRSHFPKIPNNTVREEVFSSFLSQYYLAHN 309 Query: 295 TDKPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 + P ++L+ + E+ + ++ + + G K+ G + + ++ + NA + T Sbjct: 310 EARTIPTRLILNADLMEDVTPIQEALCEVAGRKIHFNTNPSGTRGRYLKLSNTNALTAIT 369 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 K++ +++ K+ + ++ I R+E +D SH MG S + VV + G VK +YR Sbjct: 370 TKINHKMTINQRFKELQEVLSMDVIK-RMECFDISHTMGESTIASCVVFNQEGPVKPEYR 428 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ + DD A M LERR+S+ + ++ PD++ +DGGK Sbjct: 429 RYNI--TGITGGDDYAAMAQALERRYSKQLDVDK---------------IPDIIFIDGGK 471 Query: 474 GQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GQL+ A ++ K + R ++ IAKG R G+E +GE L P L+ IQ Sbjct: 472 GQLNRAHEIISKYWDDWPFRPRMMGIAKGVTRKPGLETLVTLEGEEFNLPSDAPALHLIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HR +R K S L+ I G+GP R++ LL+ G ++ + R++ E +A Sbjct: 532 HIRDESHNHAIAGHRAKRGKTRRTSALEGIEGVGPKRRQSLLKYMGGLQELKRATVEEIA 591 Query: 591 SIEGISKKIACKIYNHFHK 609 + GIS +A IY + Sbjct: 592 KVPGISHSLAENIYQALKQ 610 >gi|260914318|ref|ZP_05920787.1| excision endonuclease subunit UvrC [Pasteurella dagmatis ATCC 43325] gi|260631419|gb|EEX49601.1| excision endonuclease subunit UvrC [Pasteurella dagmatis ATCC 43325] Length = 608 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 212/617 (34%), Positives = 333/617 (53%), Gaps = 32/617 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+M D V+YVGKA +L+KR+ SY N + + +++ I I T+T Sbjct: 10 NVPHLPGVYRMYDDKDEVIYVGKAKDLKKRLASYFRRNVGSKKTEALVASIARIDTTITT 69 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N IK +PR+N+LLRDDKS+PYIL+T + P + +R S ++G YFGP Sbjct: 70 SETEALLLEHNYIKNYQPRYNVLLRDDKSYPYILLT-SERHPRITSYRGSKKVKGEYFGP 128 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183 + V AV +T+ LQ+ F +R C +SV+ +R+RPCL +QI RCS PC +S E Y + Sbjct: 129 YPHVSAVRETLALLQKLFPIRQCENSVYNNRSRPCLQYQIGRCSAPCVAGHVSDEDYQQQ 188 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240 V A+ FL G + + + M QA+ K +E A RD++ A+ + + Sbjct: 189 VDFARLFLQGKDQQVLAHLISQMEQASQKLHFEEAARIRDQIQAVRAVIEKQFVSNNRID 248 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296 +D S+ + +AC+Q F G+ G ++F K + + A++ F+ QFY Sbjct: 249 DIDIMSIAYQLGIACVQVMFIRQGKVLGNRSYFPKVPANTDLAELTETFVGQFYLQAHQG 308 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 + P I++ + E LE Q G+ V I +GEK K ++ A +NA + +L Sbjct: 309 RTIPNTIVVDHKLIEKKELEELLSLQAGHSVSIQDQTKGEKSKYLQLAQVNAKSALMTQL 368 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + + + I +R+E +D SH MG + VV NG +K+ YR+FN Sbjct: 369 KQSHLVEERYQALQALLGIECI-QRMECFDISHTMGKQTIASCVVFDHNGPLKSDYRRFN 427 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + + DD A M L +R+ + ++ ++ PDV+ +DGGKGQL Sbjct: 428 I--SGITEGDDYAAMEQALLKRYDKPLEEDK---------------VPDVIFIDGGKGQL 470 Query: 477 SAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQR 532 + A V L V +NR +I +AKG R AG+E + K E L L + L+ IQ Sbjct: 471 NRALQVFASLKVKWNKNRPHLIGVAKGVDRKAGLETLIISKQEVELHLPVDSLALHLIQH 530 Query: 533 LRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+H AI+ HRK+R++A S L+ I GIG R++ LL+ G ++ + +++ + +AS Sbjct: 531 IRDESHNHAISGHRKKRQQAFIQSGLETIEGIGAKRRQALLKYLGGMQGVKKATLDEIAS 590 Query: 592 IEGISKKIACKIYNHFH 608 + GIS+ +A KIY Sbjct: 591 VPGISRSLAEKIYETLQ 607 >gi|110802431|ref|YP_697662.1| excinuclease ABC subunit C [Clostridium perfringens SM101] gi|119367644|sp|Q0SW38|UVRC_CLOPS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|110682932|gb|ABG86302.1| excinuclease ABC, C subunit [Clostridium perfringens SM101] Length = 620 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 195/619 (31%), Positives = 318/619 (51%), Gaps = 20/619 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 + +P+ PGVY M + G V+YVGKA L+ R++ Y S NH+ ++ M+ I + Sbjct: 7 QLKILPDKPGVYIMKNSLGEVIYVGKAKVLKNRVRQYFQNSKNHSEKVRAMVKNIAEFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK+ PR+NI L+DDK +P+I IT P +Y R+ + Sbjct: 67 IVTDSEMEALILECNLIKKYSPRYNIALKDDKFYPFIKITTNEDFPRVYVTRNFAKDGNR 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ + AV + + +++ F LR+C ++ TR CL + I C PC G IS Sbjct: 127 YFGPYTNGTAVYEVMGLIKKLFPLRTCKKAIVEGGEPTRACLNYHINLCKAPCAGYISKA 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235 +Y + + E L+G + ++ + + M +A + ++E A RDR+ A+ I Sbjct: 187 EYWKMIDEIINILNGTDTSIIKNLKLEMEKAAEELEFEKAAKIRDRILAIELISEKQKMF 246 Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D LY ++ C Q F G+ G F ++ S+ +++S F+ FY Sbjct: 247 TVKEGDEDFIDLYTDEKDGCAQVFFVREGKVTGREHFMIENISDDPVKEVISSFIASFYG 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350 P+ I + EE E+ L+E ++ G KV I VPK+G+K+ +++ NA + Sbjct: 307 GTAQIPKTIYVPEEIEDQELIEKFLTEKRGSKVWIKVPKKGDKKNLLDMVRNNAKIMLDQ 366 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + + + ++ L + L +P RIE YD S+I G +VG MVV + Sbjct: 367 FKEKMVEEKELNKSALIELADVLGLDSLPTRIEAYDISNIQGVDSVGTMVVFENGKAKNS 426 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVIL 469 YR+F + VK +D MR +L RRFS ++ + + + + F +PD++++ Sbjct: 427 DYRRFKIKS--VKGPNDYESMREILSRRFSHGLEEVNKIKERNLEYSKGKFCIFPDLIMM 484 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ++ A VLK +E I + + K K F E +++ ++ Sbjct: 485 DGGKGQVNIALEVLKDFGIE--IPVCGLVKDDKHRTRGIIF---NNEEILIRRGSGLMNL 539 Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 I R++DE HR+AIT HR R K+ +S L++I IG R+R LL FG++ I ++S E Sbjct: 540 ITRVQDEVHRYAITYHRSLRDKRTLHSILEDIPRIGEKRRRNLLMKFGSIDNIKKASMEE 599 Query: 589 LASIEGISKKIACKIYNHF 607 L GI K+ A I +F Sbjct: 600 LLDTPGIDKRAAESIKQYF 618 >gi|160878485|ref|YP_001557453.1| excinuclease ABC, C subunit [Clostridium phytofermentans ISDg] gi|189038041|sp|A9KSS0|UVRC_CLOPH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|160427151|gb|ABX40714.1| excinuclease ABC, C subunit [Clostridium phytofermentans ISDg] Length = 628 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 196/629 (31%), Positives = 324/629 (51%), Gaps = 22/629 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M + ++YVGKA +L+ R++ Y S+ N + +I M+S I++ + Sbjct: 7 ELKKLPAKPGVYIMHNNKDEIIYVGKAISLKNRVRQYFQSSRNLSTKIQQMVSNIDHFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 + +E+EAL+LE N+IK +P++N +L+DDKS+PYI +T P + R + Sbjct: 67 IIVDSEMEALVLECNLIKEHRPKYNTMLKDDKSYPYIKVTVNEAYPRVLFARQQKKDKAK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT--RPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S+ AV+ ++ L+R +F+R+C ++ + RPCL + IK+C PC G IS E Sbjct: 127 YFGPYTSLGAVKDILDLLRRLYFIRTCNRNLPKDIGLERPCLYYHIKQCKAPCQGYISEE 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235 +Y + + E +FL+G + + + M A+ ++E A +RD + ++ + Sbjct: 187 EYRKSIDEVIEFLNGNYALVTKDLQAKMKAASENLEFEEAAGYRDLILSVEKLSQKQKAS 246 Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D D + + A Q F G+ G + + + + + I++ F++QFY Sbjct: 247 DVDGVDRDIIAFASTGDEAVAQVFFIRDGKMLGREHYHITGVANESRSSIMTNFVKQFYA 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HR 350 P P +LLSE EE L+ + G KV+I VPK+G+K +++E A NA + Sbjct: 307 GTPYIPRELLLSEPLEEEELISEWLSTKRGQKVRIHVPKKGDKERLVELAEKNASLVLQQ 366 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E ++ +LP R+E +D S+ G +VG MVV +N Sbjct: 367 DSDKIQREEAKTIGAVRHIADMLSLP-GIYRMESFDISNTNGFESVGSMVVYENGKPKRN 425 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP-KKQEYSFPSWPDVVIL 469 YRKF + V+ DD A MR VL RRFS K E L SF +PD++++ Sbjct: 426 DYRKFKIKS--VQGPDDYASMREVLTRRFSHGQKEAEELAKKNIDISHGSFTRYPDLILM 483 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGG+GQ++ A V+ +L + I + + K F + ++ Sbjct: 484 DGGRGQVNIALEVMNELKLT--IPVCGMVKDDNHRTRGLYF---DNVEIPIDTHSEAFRL 538 Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 I R++DE HRFAI HR R KA +S LD+I+G+G R+R L++ F ++ I +S E Sbjct: 539 ITRIQDETHRFAIEYHRSLRSKAQVHSILDDIDGVGQTRRRALMKHFASIDAIKAASMED 598 Query: 589 LASIEGISKKIACKIYNHFH-KNTSHTPT 616 L ++ ++K A K+Y FH + T T Sbjct: 599 LMAVPSMNKLSAAKVYEFFHTSSERGTET 627 >gi|225573317|ref|ZP_03782072.1| hypothetical protein RUMHYD_01508 [Blautia hydrogenotrophica DSM 10507] gi|225039329|gb|EEG49575.1| hypothetical protein RUMHYD_01508 [Blautia hydrogenotrophica DSM 10507] Length = 640 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 193/619 (31%), Positives = 325/619 (52%), Gaps = 30/619 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M D ++YVGKA +L+ R++ Y ++ N +I M++ I + Sbjct: 30 ELKKLPARPGVYIMHDEKDTIIYVGKAVSLRNRVRQYFQTSRNKGAKIESMVTHIARFEY 89 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK +P++N +L+DDKS+P+I +T P + R + Sbjct: 90 IVTDSELEALVLECNLIKEHRPKYNTMLKDDKSYPFIKVTVNEAFPRVLFARRMKKDKAK 149 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV+ I +Q+ + +R+C ++ R + RPCL + I +C GPC G++S + Sbjct: 150 YFGPYTSAGAVKDVIELVQKLYHIRTCNRNLPRDIGKERPCLFYHIHQCHGPCQGKVSQD 209 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + A KFL+G + ++ ++ M A+ + +E A+ +RD ++ I+ Sbjct: 210 EYRSQIQGALKFLNGDSDDIFRELEEKMLLASEELRFEDAMEYRDLCNSIRKIKERQKIT 269 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D ++ + A +Q F G+ G F+LK + AQ+LS FL+QFY Sbjct: 270 SYGEEDKDVIAMAMEETDAVVQVFFIREGKLIGRDHFYLKVAQGDSRAQVLSSFLKQFYA 329 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351 P P ++L +E E+ +++ ++ G +V + VPK+G K K++E A NA Sbjct: 330 GTPFIPREVMLQDEIEDGVIIQEWLTQRRGQRVYLRVPKKGTKEKLVELAAENAWMVLSK 389 Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E +K+ L +RIE YD S+I G +VG MVV + ++ Sbjct: 390 DKERIKREEGRTIGAVKEIESWIGLK-GVQRIEAYDISNISGFESVGSMVVYEKGKPKRS 448 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YRKF + V+ +D A M VL RRF+ K+ SF PD++++D Sbjct: 449 DYRKFKIKW--VQGPNDYASMEEVLTRRFTH----------ESDKEYDSFALLPDLIMMD 496 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GG+GQ++ A VL+ LN+ +I + + K + + + ++ I Sbjct: 497 GGRGQVNVALKVLENLNL--QIPVCGMVKDDHHRTRG---LYYRNQEIPIDTSSEGFRLI 551 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DEAHRFAI HR R K +S LDEI GIGP R++ L++ F +++ + +S E L Sbjct: 552 TRIQDEAHRFAIEFHRSLRSKEQVHSVLDEIPGIGPARRKALMRKFKSLEAVRDASLEEL 611 Query: 590 ASIEGISKKIACKIYNHFH 608 E ++++ A ++Y FH Sbjct: 612 IQTEAMNERSARQVYEFFH 630 >gi|292669461|ref|ZP_06602887.1| excision endonuclease subunit UvrC [Selenomonas noxia ATCC 43541] gi|292648914|gb|EFF66886.1| excision endonuclease subunit UvrC [Selenomonas noxia ATCC 43541] Length = 609 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 196/619 (31%), Positives = 306/619 (49%), Gaps = 40/619 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 + +P+ PGVY M D G+++YVGKA L+ R++ Y S+ N ++ M+S I + Sbjct: 8 KLKLLPDSPGVYIMKDARGKIIYVGKAIVLKNRVRQYFQSSRNQAPKVRAMVSHIADFET 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T EVE+L+LEAN+IK+ +PR+NI L+DDKS+PY+ +T + + P ++ R Sbjct: 68 IMTANEVESLILEANLIKKHRPRYNIRLKDDKSYPYVKVTVQEEFPRVFITRRVLRDGAR 127 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGP+ +V A+ ++ L+R F LR+C RPCL + IKRC PC +++ E Y Sbjct: 128 YFGPYTNVTALRDSLKLLKRLFPLRTCRIMP----DRPCLEYHIKRCLAPCVEKVTEEDY 183 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 +H FL G +++ ++ M+ A +E+A RD+L A+ + + Sbjct: 184 RAMIHAVLLFLEGRTDDVERELEHRMDLAAEGYHFETAARLRDQLTAVRKAAERQNIVTG 243 Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D + C+Q F G+ G F L+ E ++A IL FL Q+Y Sbjct: 244 AGDQDAIGMARAAMGVCVQIFFIRGGKMIGREHFHLRGSEEESDADILRAFLEQYYNRAT 303 Query: 299 -CPENILLSEEAEET--SLLEISFFKQY-GYKVKITVPKQGEKRKIIEQALINAH----R 350 P ILL + ++E ++ G KV + P++G K I+ A NA Sbjct: 304 FVPREILLPHAIDGMGREVIERWLTERRGGGKVTLLTPQRGTKHDIVVMATDNAEKFLAD 363 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 T++ + +++ ++ L + P R+E +D SH G V MVV K+ Sbjct: 364 EETRRSLADAETMGAVEELGRRLGLKNPPYRMECFDISHNQGQETVASMVVFEGGLPKKS 423 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YR+F + + DD MR V RR+ L + E PD++I+D Sbjct: 424 DYRRFKIRSAEG-KPDDFLSMREVTTRRYVGLPEKE----------------LPDLIIID 466 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYF 529 GGKGQLS+A +++ + ++ +AK E F E + L R LY Sbjct: 467 GGKGQLSSALEIIRNEAGHKNVPVVGLAKQ------FELVFTEGNSEPIELPRRSQALYL 520 Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 IQR+RDEAHRFA+T HRK R K+ S LD I GIG R++ L FGT+ I +S + Sbjct: 521 IQRIRDEAHRFAVTFHRKLRGKRNLVSVLDHIVGIGAKRRQSLWNHFGTIDKIKAASIDE 580 Query: 589 LASIEGISKKIACKIYNHF 607 L G+++ A +Y F Sbjct: 581 LLKAPGMNRPSAEAVYYFF 599 >gi|227549218|ref|ZP_03979267.1| excinuclease ABC subunit C [Corynebacterium lipophiloflavum DSM 44291] gi|227078672|gb|EEI16635.1| excinuclease ABC subunit C [Corynebacterium lipophiloflavum DSM 44291] Length = 689 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 189/682 (27%), Positives = 311/682 (45%), Gaps = 83/682 (12%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFTVT 63 +P PGVY+ D AGRV+YVGKA NL+ R+ +Y R M+ ++ +TV Sbjct: 13 TIPTEPGVYKFRDAAGRVVYVGKAKNLRARLNNYFQPPRQLHPRTRQMVFTAASVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +EVEAL LE IKR P FN++ RDDK++P + ++ + P + +R YFG Sbjct: 73 ASEVEALQLEYTWIKRFDPWFNVMYRDDKTYPMLAVSVSERFPRAFFYRGPRRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ AV +T++ L R F +R+C++ VF RPCLL I +CS PC G ++ ++Y Sbjct: 133 PYSHAWAVRETLDLLTRVFPIRTCSNGVFNRHEALGRPCLLGYIDKCSAPCVGRVADDEY 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 E V FLSG ++ +++ R MN A + ++E A RD L A+ + + Sbjct: 193 DEIVRGFVSFLSGRTDDVVKQLTRRMNAAAAELEFEKAARLRDDLEAVKKVMERQTVVLS 252 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQI------------ 285 D + ++ A +Q G+ R + ++ + +Q Sbjct: 253 LGTDADVIAFATDELEAAVQIFTVRDGRIRAQRGWVVEKTGDEPGSQDRLEEDEADPAVS 312 Query: 286 --LSYFLRQFYTDKP------------------------------------CPENILLSE 307 + FL Q+Y+D P +L+ Sbjct: 313 ALMQDFLVQYYSDTADRVKEEQAEDARLRESKVRRRGVDQESHAPVTPPVAIPREVLVDT 372 Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE----ISHQ 363 EE + + G V I VP++G+K +++ NA + Q+ + Sbjct: 373 LPEEAGEVADLIAELRGGPVDIRVPQRGDKAALMQTVGRNAQEALNQRKLKRVGDLTARS 432 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 L+D + P R+E D SHI G V +VV + KN YR++ + Sbjct: 433 QALQDIQDALGMEQAPLRMECTDISHIQGTDVVASLVVFEDGLPRKNDYRRYRIKEAAGD 492 Query: 424 TQ-DDCAMMRMVLERRFSQLIKNE--------------ENLNFHPKKQEYSFPSWPDVVI 468 + DD + V RRF + +++ + F P + I Sbjct: 493 GRSDDVGSIAEVTRRRFKRYTEDKLANPDEEAAALMFADEAAQVETTGARRFAYPPQLFI 552 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 +DGGK Q++AAQ V +L + + + +I +AK + E + E ++L +Y Sbjct: 553 VDGGKPQVNAAQAVFDELGIVD-VQLIGLAKRLE-----EIWVPDDDEPVILPRNSEGMY 606 Query: 529 FIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 +Q++RDEAHRFAIT HR++R K S LD + G+GP R+ L++ FG+VK I+ ++ E Sbjct: 607 LLQQIRDEAHRFAITYHRQQRSKRMRASALDGVPGLGPARRTDLVKYFGSVKKITEATKE 666 Query: 588 TLASIEGISKKIACKIYNHFHK 609 + ++G+ K+A IY H H+ Sbjct: 667 EIQQVKGVGPKLAESIYEHLHR 688 >gi|325662451|ref|ZP_08151057.1| UvrABC system protein C [Lachnospiraceae bacterium 4_1_37FAA] gi|325471285|gb|EGC74509.1| UvrABC system protein C [Lachnospiraceae bacterium 4_1_37FAA] Length = 612 Score = 511 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 200/619 (32%), Positives = 329/619 (53%), Gaps = 25/619 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M D ++YVGKA +L+ R++ Y ++ N +I M++ I+ + Sbjct: 7 ELKKLPSKPGVYLMHDEKDDIIYVGKAISLKNRVRQYFQASRNKGVKIEQMVTHISRFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK +P++N +L DDK++P+I +T + P + R+ + Sbjct: 67 IVTDSELEALVLECNLIKEHRPKYNTMLMDDKTYPFIKVTIEEAYPRILFAREMKKDKAK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV+ TI L++ + +RSC ++ + + RPCL + IK+C PC IS E Sbjct: 127 YFGPYTSAGAVKDTIELLRKLYHIRSCNRNLPKDIGKERPCLNYHIKQCYAPCQNYISQE 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y E V +A +FLSG + +++ M A+ ++E A+ +RD LA++ I Sbjct: 187 AYRESVQKAVEFLSGKYDPILKELQEKMECASEAMEFEKAMEYRDLLASVKQIAQKQKIT 246 Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D ++ A +Q F G+ G F++ A+IL+ F++QFY Sbjct: 247 NSDGEDKDILAVATEDRDAVVQVFFIRGGRLIGRDHFYMTITDREPKAEILTSFIKQFYA 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351 P P +++ +E EE +LE ++ G++V I VPK+GEK K++E A NA Sbjct: 307 GTPYVPRELMIQQEIEEQEVLEEWLSERRGHRVHIRVPKKGEKEKLVELAKKNAQLVLST 366 Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E +K+ K + + RIE +D S+ G ++VG M+V + +N Sbjct: 367 DKERLKREEGRTIGAVKEIEKWLGIASVK-RIEAFDISNTNGFNSVGSMIVYEKGKPKRN 425 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YRKF + V+ DD A MR VL RRF ++ E K F ++PD++++D Sbjct: 426 DYRKFKIKG--VQGADDYASMREVLTRRFEHGMREREE-----GKDHGGFQTFPDLIMMD 478 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ++ A VL +L + I + + K E + ++ I Sbjct: 479 GGKGQVNIALEVLDQLGI--VIPVCGMVKDDHHRTRG---LYYNNEEIGIDRNSEGFRLI 533 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DEAHRFAI HRK R + +S LD+I GIGP R++ L++ F ++ I ++ E L Sbjct: 534 TRIQDEAHRFAIEFHRKLRSQGQVHSILDDIPGIGPARRKALMKHFMSLDAIKAATIEEL 593 Query: 590 ASIEGISKKIACKIYNHFH 608 I +++K A ++YN FH Sbjct: 594 KEIPSMNEKSANEVYNFFH 612 >gi|319896470|ref|YP_004134663.1| uvrabc system protein c [Haemophilus influenzae F3031] gi|317431972|emb|CBY80320.1| UvrABC system protein C [Haemophilus influenzae F3031] Length = 609 Score = 511 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 207/616 (33%), Positives = 335/616 (54%), Gaps = 32/616 (5%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 PGVY+M D +V+YVGKA +L+KR+ SY N + + +++ I++I +T +E Sbjct: 13 HEPGVYRMYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVASIHHIDTMLTSSET 72 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EALLLE N IK +PR+N+LLRDDKS+P+IL+T K + P + +R S G YFGP+ Sbjct: 73 EALLLEHNFIKLYQPRYNVLLRDDKSYPFILLT-KERHPRITSYRGSKKFAGEYFGPYPH 131 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHE 186 AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCS PC +S E+Y + V Sbjct: 132 AGAVRETLSLLQKLFPVRQCENSVYSNRSRPCLQYQIGRCSAPCVQGYVSDEEYNQQVEL 191 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMD 243 A+ FL G + + + + M QA+ +E A +RD++ A+ + + MD Sbjct: 192 ARLFLQGKDQQVLDYLIGKMEQASRNLGFEQAARYRDQIQAVRSVIEKQFVSNERLDDMD 251 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPC 299 S+ + LAC+Q F G+ G ++F K + + +++ F+ QFY + Sbjct: 252 IMSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTETFVGQFYLQGHQGRSI 311 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P +I++ + E S LE +Q G KV I +G+K K ++ A +NA + + Sbjct: 312 PNSIIVDRQLAEKSELEQLLSEQAGRKVTIQESVKGDKSKYLQLAQVNAKAALNVQFKQS 371 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + LP I R+E +D SH MG V VV + G +K+ YR+FN+ Sbjct: 372 SRMSARYQALCDLLNLPEIK-RMECFDISHTMGNQTVASCVVFNQEGPLKSDYRRFNIEG 430 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A M L++R+ + ++ ++ PD++ +DGGKGQL+ A Sbjct: 431 --ITGGDDYAAMEQALQKRYERNLEEDK---------------IPDIIFIDGGKGQLNRA 473 Query: 480 QGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535 V + L V +NR +I +AKG R AG E + K+ + L L+ IQ +RD Sbjct: 474 LNVFQHLQVKWDKNRPHLIGVAKGVARRAGQEVLIISKQDREIHLPDDSLALHLIQHIRD 533 Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E+H AI+ HRK+R+KA S L+ I G+G R++ LL+ G ++ + +++ + +AS+ G Sbjct: 534 ESHNHAISGHRKKRQKAFTQSGLETIEGVGAKRRQALLKYLGGLQGVKKATLDEIASVPG 593 Query: 595 ISKKIACKIYNHFHKN 610 IS K+A +I+ + Sbjct: 594 ISPKLAERIFETLKND 609 >gi|113460804|ref|YP_718871.1| excinuclease ABC subunit C [Haemophilus somnus 129PT] gi|119367655|sp|Q0I2X4|UVRC_HAES1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|112822847|gb|ABI24936.1| Excinuclease ABC subunit C [Haemophilus somnus 129PT] Length = 609 Score = 511 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 212/619 (34%), Positives = 344/619 (55%), Gaps = 32/619 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY+M D G+V+YVGKA +L+KR+ SY +N ++ + + ++S I++I T+T Sbjct: 10 NVTHQPGVYRMFDEKGQVIYVGKAKDLKKRLSSYFRTNLNSKKTSALVSHIHSIETTITA 69 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N IK +PR+N+LLRDDKS+PYIL+T K + P + HR S +QG YFGP Sbjct: 70 SETEALLLEHNYIKAFQPRYNVLLRDDKSYPYILLT-KERHPRITSHRGSKKVQGEYFGP 128 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEF 183 + AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCSGPC +S E+Y + Sbjct: 129 YPHAGAVRETLSLLQKLFPIRQCENSVYNNRSRPCLQYQIGRCSGPCIDGLVSDEEYQQQ 188 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240 V A+ FL G + + E + + M QA+++ ++E A RD++ A+ + + Sbjct: 189 VDFARLFLQGKDQQVLEHLIKKMEQASMQLNFEQAAYFRDQIQAIRAVIEKQFVSNERLD 248 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296 MD ++ + +AC+Q F G+ G ++F K + + +++ F+ QFY Sbjct: 249 DMDILAIAYQLGIACVQVLFIRQGKVLGNRSYFPKVPANTDLSELTETFVGQFYLQGHQG 308 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 + P I++ E LE+ +Q G KV I +G K K + A +NA + +L Sbjct: 309 RIIPSTIIVDHVLNEKHELEVLLTEQAGRKVNIQDNVKGNKSKFLHLAQMNAQAALVTQL 368 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 Q + + +L I R+E +D SH MG + VV G +K+ YR+FN Sbjct: 369 KQANLIQERYQALQELLSLTTIK-RMECFDISHTMGEQTIASCVVFDTEGPLKSDYRRFN 427 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + + DD A M L +R+ + ++NE+ PD++ +DGGKGQL Sbjct: 428 I--SGITAGDDYAAMEQALLKRYDRPLENEK---------------IPDIIFIDGGKGQL 470 Query: 477 SAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQR 532 + A V +LNV +N+ +I +AKG R AG+E + K+ + + L L+ IQ Sbjct: 471 NRALQVFAQLNVSWDKNKPILIGVAKGVDRKAGLETLIISKQNKEVNLLPDSLALHLIQH 530 Query: 533 LRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+H AI HRK+R++A S L+ I G+G R++ LL+ G ++ + ++ ++S Sbjct: 531 IRDESHYHAIGGHRKKRQQAFTQSGLEAIEGVGAKRRQALLKYLGGMQGVKNATLAEISS 590 Query: 592 IEGISKKIACKIYNHFHKN 610 + GIS +A +IY Sbjct: 591 VPGISAALAERIYETLRSE 609 >gi|238799114|ref|ZP_04642569.1| UvrABC system protein C [Yersinia mollaretii ATCC 43969] gi|238717022|gb|EEQ08883.1| UvrABC system protein C [Yersinia mollaretii ATCC 43969] Length = 588 Score = 511 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 212/606 (34%), Positives = 329/606 (54%), Gaps = 31/606 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D AG V+YVGKA +L+KR+ SY + + + ++ I I TVT TE EALLLE Sbjct: 1 MYDKAGTVIYVGKAKDLKKRLTSYFRAQVASRKTETLVKNIAQIDVTVTHTETEALLLEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK +PR+N+LLRDDKS+P I ++ P L HR + +G YFGPF + AV +T Sbjct: 61 NYIKLYQPRYNVLLRDDKSYPLIFLS-ADTHPRLAIHRGAKHEKGEYFGPFPNSYAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193 + LQ+ F +R C +SV+R+R+RPCL +QI RCSGPC +S E+Y V + FLSG Sbjct: 120 LALLQKLFPVRQCENSVYRNRSRPCLQYQIGRCSGPCVAGLVSDEEYQRQVDYVRLFLSG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--DCFSLYHNK 251 + + ++ M +A+ +E A RD++ A+ + + D + + Sbjct: 180 KDQQVLTQLISRMEEASKSLHFEDAARIRDQIQAVRRVTEQQFVSGDSEDLDVIGVAFDA 239 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLSE 307 LAC+ F G+ G+ ++F K + + ++++ F+ QFY + P ILL Sbjct: 240 GLACVHVLFIRQGKVLGSRSYFPKVPAGTELSEVVQTFVGQFYLQGSQGRTLPGEILLDF 299 Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367 EE LL S + G K++I +G++ + ++ A NA + +LS + + +K Sbjct: 300 SLEEKDLLASSLSELAGRKIQIQSRPRGDRARYLKLARTNASTALITRLSQQSTIHQRMK 359 Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427 + K L R+E +D SH MG V VV NG V+++YR++N+ + + DD Sbjct: 360 ELAKILKLD-EINRMECFDISHTMGEQTVASCVVFDANGPVRSEYRRYNI--SGITPGDD 416 Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487 A M VL+RR+ + + ++ PD++ +DGGKGQLS A V LN Sbjct: 417 YAAMSQVLKRRYGKALDEKK---------------IPDIIFIDGGKGQLSQAFDVFASLN 461 Query: 488 V---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 V + + ++ +AKG R AG+E F+ +GE L P L+ IQ +RD++H AIT Sbjct: 462 VPWDKQKPLLVGVAKGSDRKAGLETLFLAAEGEGFSLPPDSPALHLIQHIRDDSHNHAIT 521 Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR+RR K S L+ I GIGP R+++LL+ G ++ + +S E +A + IS+ +A K Sbjct: 522 GHRQRRSKVKNTSALETIEGIGPKRRQILLKYMGGLQPLLNASVEEIAKVPSISQALAEK 581 Query: 603 IYNHFH 608 IYN Sbjct: 582 IYNALK 587 >gi|301168650|emb|CBW28241.1| excinuclease UvrABC, endonuclease subunit [Haemophilus influenzae 10810] Length = 609 Score = 511 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 210/616 (34%), Positives = 336/616 (54%), Gaps = 32/616 (5%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 PGVY+M D +V+YVGKA +L+KR+ SY N + + +++ I++I +T +E Sbjct: 13 HEPGVYRMYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVASIHHIDTMLTSSET 72 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EALLLE N IK +PR+N+LLRDDKS+P+IL+T K + P + +R S G YFGP+ Sbjct: 73 EALLLEHNFIKLYQPRYNVLLRDDKSYPFILLT-KERHPRITSYRGSKKFAGEYFGPYPH 131 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHE 186 AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCS PC +S E+Y + V Sbjct: 132 AGAVRETLSLLQKLFPVRQCENSVYSNRSRPCLQYQIGRCSAPCVQGYVSDEEYNQQVEL 191 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMD 243 A+ FL G + + + + M QA+ D+E A +RD++ A+ + + MD Sbjct: 192 ARLFLQGKDQLVLDYLIGKMEQASRNLDFEQAARYRDQIQAVRSVIEKQFVSNERLDDMD 251 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPC 299 S+ + LAC+Q F G+ G ++F K + + +++ F+ QFY + Sbjct: 252 IMSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTETFVGQFYLQGHQGRSI 311 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P +I++ + E S LE KQ G KV I +G+K K ++ A +NA + +L Sbjct: 312 PNSIIVDRQLAEKSELEQLLSKQAGRKVTIQESVKGDKSKYLQLAQVNAKAALNVQLKQS 371 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + LP I R+E +D SH MG V VV + G +K+ YR+FN+ Sbjct: 372 SRMSERYQALCDLLNLPEIK-RMECFDISHTMGNQTVASCVVFNQEGPLKSDYRRFNIEG 430 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A M L++R+ + ++ ++ PD++ +DGGKGQL+ A Sbjct: 431 --ITGGDDYAAMEQALQKRYERDLEEDK---------------IPDIIFIDGGKGQLNRA 473 Query: 480 QGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535 V + L V +NR +I +AKG R AG E + K+ + L L+ IQ +RD Sbjct: 474 LNVFQHLQVKWDKNRPHLIGVAKGVDRRAGQEVLIISKQDREIHLPDDSLALHLIQHIRD 533 Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E+H AI+ HRK+R+KA S L+ I G+G R++ LL+ G ++ + +++ + +AS+ G Sbjct: 534 ESHNNAISGHRKKRQKAFTQSGLETIEGVGAKRRQALLKYLGGLQGVKKATLDEIASVPG 593 Query: 595 ISKKIACKIYNHFHKN 610 IS K+A I+ + Sbjct: 594 ISLKLAETIFETLKND 609 >gi|261820886|ref|YP_003258992.1| excinuclease ABC subunit C [Pectobacterium wasabiae WPP163] gi|261604899|gb|ACX87385.1| excinuclease ABC, C subunit [Pectobacterium wasabiae WPP163] Length = 610 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 211/618 (34%), Positives = 333/618 (53%), Gaps = 31/618 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D+ V+YVGKA +L+KR+ SY S+ + + ++ I +I T+ Sbjct: 11 LKTVTSQPGVYRMYDVGNTVIYVGKAKDLKKRLASYFRSHVASRKTEALVKSIKHIDVTI 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P + ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPMVFLS-GDAHPRLTIHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + +AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E Y Sbjct: 130 GPFPNGNAVRETLILLQKLFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVSGLVSEEDYQ 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + V + FLSG + + K+ M A+ + +E A RD++ A+ + + Sbjct: 190 QQVEYVRLFLSGKDQQVLNKLIFRMEAASRELHFEDAARIRDQIQAVRRVTEKQFVSGDG 249 Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 +D S+ + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 250 EDLDVISVAFDAGMACVYVLFIRQGKVLGSRSYFPKVPGGTELGEVVQTFVGQFYLQGNL 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + LL S G KV+I +G++ + ++ A NA + K Sbjct: 310 GRTLPTEILLDFTLPDKDLLTESLTAVAGRKVQIQTKPRGDRARYLKLARTNAATALVTK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP R+E +D SH MG V VV NG ++++YR++ Sbjct: 370 LSQQSTIHQRLATLANVLQLP-EIHRMECFDISHTMGEQTVASCVVFDANGPLRSEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + + DD A M VL RR+ + + + + PDV+++DGGKGQ Sbjct: 429 NI--SGITPGDDYAAMAQVLRRRYGKALDDSK---------------IPDVIVIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQ 531 LS AQ V L V +N+ ++ +AKG R AG+E F + GE + L P L+ IQ Sbjct: 472 LSQAQSVFDSLQVSWDKNKPLLLGVAKGSDRKAGLETLFFEATGEGVALPADSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RD++H AI HRK+R K S L+ I G+GP R++ LL+ G ++ + +S E +A Sbjct: 532 HIRDDSHDHAIGGHRKKRAKVKNTSTLELIEGVGPKRRQTLLKYMGGLQPLMNASIEEIA 591 Query: 591 SIEGISKKIACKIYNHFH 608 ++ GIS +A KI++ Sbjct: 592 NVPGISHALAEKIFHALK 609 >gi|29654488|ref|NP_820180.1| excinuclease ABC subunit C [Coxiella burnetii RSA 493] gi|81628906|sp|Q83CD5|UVRC_COXBU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|29541755|gb|AAO90694.1| excinuclease ABC subunit C [Coxiella burnetii RSA 493] Length = 609 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 220/618 (35%), Positives = 337/618 (54%), Gaps = 26/618 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P GVYQM D G+V+YVGKA NLQKR+ SY + + M++Q+ +I+ T+ Sbjct: 10 LKTLPTGSGVYQMQDAQGKVIYVGKARNLQKRVSSYFRRQLDS-KTQAMMAQVQSIQTTI 68 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T E EALLLEA+ IK+ +PR+N+LLRDDKS+PY+ + K P L +R + G YF Sbjct: 69 TRNENEALLLEASFIKQFRPRYNVLLRDDKSYPYLYLATHQKFPRLDFYRGAKKAPGRYF 128 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +V + + +Q+ F LR C++S F++RTRPCL +QIKRC+ PC G ++ ++Y Sbjct: 129 GPYPNAGSVRENLALIQKLFKLRQCSESFFKNRTRPCLQYQIKRCTAPCVGYVNEQEYRR 188 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YN 240 V +A F G N + K+ M + +E A +RD++ L +Q Sbjct: 189 QVEDAILFFEGKNDQVIIKLTERMEVTSENLVFEEAAHYRDQIRQLRRLQKQQIITGGKG 248 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT----D 296 +D + + F G+ G FF T +T L F+ Q+Y + Sbjct: 249 NIDIIGIAESNGAIGFAILFIRSGRMIGHKPFFPNTPLGTTLQTALVEFIPQYYLSPLRN 308 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 PE I+ SE E+ ++ + K+ IT K+ ++ A +NA ++ +Q L Sbjct: 309 GDIPERIVTSEPLEDRLWIQRALSSGLNRKLAITDQKRAPYKQWQAMAALNAAQALSQHL 368 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + + + + L+ K ALP+ RIE +D SH +G + V VV GE G +K YR+FN Sbjct: 369 AQKNTFALKLEAIQKSLALPNPIARIECFDISHTLGEATVASCVVFGEEGPIKKDYRRFN 428 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + V DD +R L RR+ +L + E PDV+++DGG GQL Sbjct: 429 I--SGVTPGDDYGALRQALTRRYVRLKEGE--------------GILPDVLLIDGGMGQL 472 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535 A VL++L V I + +IAKGP R AG+EK FV + E + L + + IQ++RD Sbjct: 473 RQAAEVLEELQVSGVI-LTAIAKGPGRKAGLEKLFVWGRREEIHLPADNIAFHLIQQIRD 531 Query: 536 EAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFAIT H RR K+ S L EI GIGP R++ LL+ FG ++ + R+S E +A + G Sbjct: 532 EAHRFAITAHCNRRAKRRVESTLQEIEGIGPKRRQKLLKYFGGLQELQRASIEEIARVPG 591 Query: 595 ISKKIACKIYNHFHKNTS 612 +S+ +A IY+ H++ Sbjct: 592 VSETLAKAIYDACHQHKG 609 >gi|159038878|ref|YP_001538131.1| excinuclease ABC subunit C [Salinispora arenicola CNS-205] gi|189038084|sp|A8LW31|UVRC_SALAI RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|157917713|gb|ABV99140.1| excinuclease ABC, C subunit [Salinispora arenicola CNS-205] Length = 660 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 189/647 (29%), Positives = 305/647 (47%), Gaps = 54/647 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVT 63 +PE PGVY+ D GRV+YVGKA NL+ R+ SY N R M+ ++ + Sbjct: 13 TIPESPGVYRFRDGTGRVIYVGKARNLRSRLNSYFADPVNLHQRTRQMVFTAESVDWISV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL E IK+ PRFN+ RDDKS+PY+ +T + P L R + YFG Sbjct: 73 ATEVEALQQEFTEIKQYDPRFNVRYRDDKSYPYLAVTVDEEFPRLQVMRGAKRRGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F R+C+ VF+ RPCLL I +CS PC G +S+E++ Sbjct: 133 PYSHAWAIRETLDLLLRVFPARTCSSGVFKRAGQVGRPCLLGYIGKCSAPCVGSVSAEEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + V+ F++G + ++ R M +A+ + ++E A RD LAAL ++ Sbjct: 193 RDIVNGFCDFMAGRTDAMVRRLEREMAEASAELEFERAARLRDDLAALRRAMEKQTVVFG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294 D + + A +Q G+ RG + ++ + T ++ +F Q Y Sbjct: 253 DGTDADVVAFADDPLEAAVQVFHVRDGRIRGQRGWVVEKTEDLTAGDLVHHFCTQVYGGE 312 Query: 295 -TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 + P +L+ E + L + G +V + VP++G+KR ++E NA + Sbjct: 313 HGEAHVPRELLVPELPADVEALADWLSEHRGSRVTLRVPQRGDKRALLETVARNATDALA 372 Query: 354 QKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 + + L + + P RIE +D S I G V MVV + K Sbjct: 373 RHKLKRAGDLTTRSKALDEIADTLGMRTAPLRIECFDISQIQGTDVVASMVVFEDGLPRK 432 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEEN--------------------- 448 ++YR+F + DD + M VL RRF++ + Sbjct: 433 SEYRRFIIRG----ATDDLSAMSEVLRRRFARYLDARAETGEAGVESAGDPDAPAGPDAP 488 Query: 449 -------LNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGP 501 L + F P +V++DGG Q++AA L +L V++ + + +AK Sbjct: 489 DEPRVGTLVDPTTGRPRKFAYPPQLVVVDGGAPQVAAAAQALAELGVDD-VALCGLAKRL 547 Query: 502 KRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEI 560 + E + +L LY +QR+RDEAHRFAIT HR+RR + S LD + Sbjct: 548 E-----EVWLPDDDFPAILPRTSEGLYLLQRVRDEAHRFAITFHRQRRSRRMTESALDRV 602 Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G+G +R++ LL+ FG++K ++ +S E + + GI K+ A I Sbjct: 603 SGLGEVRRKALLRHFGSLKRLAAASVEEITEVPGIGKRTAEAILAAL 649 >gi|168204466|ref|ZP_02630471.1| excinuclease ABC, C subunit [Clostridium perfringens E str. JGS1987] gi|170664072|gb|EDT16755.1| excinuclease ABC, C subunit [Clostridium perfringens E str. JGS1987] Length = 620 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 197/619 (31%), Positives = 319/619 (51%), Gaps = 20/619 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 + +P+ PGVY M + G V+YVGKA L+ R++ Y S NH+ ++ M+ I + Sbjct: 7 QLKILPDKPGVYIMKNSLGEVIYVGKAKVLKNRVRQYFQNSKNHSEKVRAMVKNIAEFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK+ PR+NI L+DDK +P+I IT P +Y R+ + Sbjct: 67 IVTDSEMEALILECNLIKKYSPRYNIALKDDKFYPFIKITTNEDFPRVYVTRNFAKDGNR 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ + AV + + +++ F LR+C ++ TR CL + I C PC G IS Sbjct: 127 YFGPYTNGTAVYEVMGLIKKLFPLRTCKKAIVEGGEPTRACLNYHINLCKAPCAGYISKA 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235 +Y E + E L+G + ++ +K+ M +A + ++E A RDR+ A+ I Sbjct: 187 EYWEMIDEIINILNGTDTSIIKKLKLEMEKAAEELEFEKAAKIRDRILAIELISEKQKMF 246 Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D LY ++ C Q F G+ G F ++ S+ +++S F+ FY Sbjct: 247 TVKEGDEDFIDLYTDEKDGCAQVFFVREGKVTGREHFMIENISDDPVKEVISSFIASFYG 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350 P+ I + EE E+ L+E ++ G KV I VPK+G+K+ +++ NA + Sbjct: 307 GTAQIPKTIYVPEEIEDQELIEKFLTEKRGSKVWIKVPKKGDKKNLLDMVRNNAKIMLDQ 366 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + + + ++ L + L +P RIE YD S+I G +VG MVV + Sbjct: 367 FKEKMVEEKELNKSALTELADVLGLDSLPVRIEAYDISNIQGVDSVGTMVVFENGKAKNS 426 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVIL 469 YR+F + VK +D MR +L RRFS ++ + + + + F +PD++++ Sbjct: 427 DYRRFKIKS--VKGPNDYESMREILSRRFSHGLEEVNKIKERNLEYSKGKFCIFPDLIMM 484 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ++ A VLK +E I + + K K F E +++ ++ Sbjct: 485 DGGKGQVNIALEVLKDFGIE--IPVCGLVKDHKHRTRGIIF---NNEEILIRRGSGLMNL 539 Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 I R++DE HR+AIT HR R K+ +S L++I IG R+R LL FG++ I ++S E Sbjct: 540 ITRVQDEVHRYAITYHRSLRDKRTLHSILEDIPRIGEKRRRNLLMKFGSIDNIKKASMEE 599 Query: 589 LASIEGISKKIACKIYNHF 607 L GI K+ A I +F Sbjct: 600 LLDTPGIDKRAAESIKQYF 618 >gi|312110004|ref|YP_003988320.1| excinuclease ABC, C subunit [Geobacillus sp. Y4.1MC1] gi|311215105|gb|ADP73709.1| excinuclease ABC, C subunit [Geobacillus sp. Y4.1MC1] Length = 590 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 181/613 (29%), Positives = 300/613 (48%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG Y M D G V+YVGKA L+ R++SY H + ++++I + + VT + Sbjct: 12 LPEQPGCYLMKDKNGTVIYVGKAKVLKNRVRSYFTGT-HDGKTQRLVNEIADFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 VEAL+LE N+IK+ P++N++L+DDKS+P+I IT K P L R G YFGP+ Sbjct: 71 NVEALILEMNLIKKYDPKYNVMLKDDKSYPFIKIT-AEKHPRLVITRKVKKDGGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A +T L R + LR C+ R CL + + +C PC +S ++ E V Sbjct: 130 PNVQAANETKKLLDRIYPLRKCSTMP----NRVCLYYHMGQCLAPCVHPVSEQQNKEIVE 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 + +FL+GG +KE++A M +A ++E A +RD+++ + + N Sbjct: 186 QIVRFLNGGYKEVKEELAEKMRKAAEALEFERAKEYRDQISHIEATMEKQKMVINDFVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F ++K C+Q F G+ + + + P+ Sbjct: 246 DVFGYAYDKGWMCVQVFFIRQGKLIERDVSMFPMYQDPDEEFLTFLGQFYTKANHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 ++L + + + +V + PK+G+K+++++ A NA Sbjct: 306 VILPADMDGE-------LAEQLLEVTVVQPKKGKKKELVDLASKNAAIALQEKFYLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ K +P RIE +DNS+I G V MVV + K +YRK+ + Sbjct: 359 EERTIKAVENLGKILGIPTP-HRIEAFDNSNIHGADPVSAMVVFIDGKPEKKEYRKYKVK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++++K + PD++I+DGGKG L+A Sbjct: 418 T--VEGPDDYESMREVVRRRYTRVLKEK--------------LPLPDLIIIDGGKGHLAA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ VL+ +L ++ I + +AK K E + + L Y +QR++DE Sbjct: 462 ARDVLENELGLD--IPLAGLAKDDKHRTS-ELIMGDPPQVVPLARNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFA+T HR+ R K S LD+I G+G RK+ LL+ FG++K + ++ E L I Sbjct: 519 HRFAVTFHRQTRGKTMLRSVLDDIPGVGEKRKKALLKHFGSIKNMREATVEELQKA-NIP 577 Query: 597 KKIACKIYNHFHK 609 + +A KIY + Sbjct: 578 RSVAEKIYEKLRE 590 >gi|332799512|ref|YP_004461011.1| UvrABC system protein C [Tepidanaerobacter sp. Re1] gi|332697247|gb|AEE91704.1| UvrABC system protein C [Tepidanaerobacter sp. Re1] Length = 609 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 214/616 (34%), Positives = 334/616 (54%), Gaps = 31/616 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVT 63 PE PGVY M D R++YVGKA +L+ R++SY S + ++ MIS++ NI + VT Sbjct: 9 DFPEKPGVYIMKDKRNRIIYVGKAVSLKNRVRSYFQSPKNLPIKVASMISKVENIEYIVT 68 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +EVEAL+LE N+IK +P++NILLRDDK +PYI IT P L R + YFG Sbjct: 69 DSEVEALILECNLIKFNRPKYNILLRDDKQYPYIRITLNQPFPRLEVVRRVKQDKARYFG 128 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADS--VFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 P+A V A+ + I+ + + F +RSC + RPCL + IKRC PC G I +E+Y Sbjct: 129 PYADVGAMREAIDVINKIFPIRSCRKDLSQIPLKERPCLNYHIKRCLAPCQGFIEAEEYD 188 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 E + FL G L +++ M +A ++E A RD++AAL + + Sbjct: 189 EIIKNIIMFLEGKQETLVKQLKEKMQEAADNLNFEKAAALRDQIAALEKVLEEQKIVSTD 248 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-K 297 M D ++ ++ CIQ F G+ G F L + + +IL+ F++QFY + Sbjct: 249 MIDQDIIAMARGIDMVCIQVFFVREGKVVGREPFILSNTNGAERREILTAFVKQFYNNAN 308 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHT 353 P+ I++ E+ ++ S +E + G KV + +PK+GEK+K+ E NA + + Sbjct: 309 FIPDEIIIDEDIDDKSTIEEWLKHKKGSKVYVIIPKRGEKKKLAEMVAENARIYLDQVDS 368 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + ++ + L++ + L IP+RIE +D S+ G +V MVV E K YR Sbjct: 369 KDEREKLRNLQALEELKQYLNLEDIPRRIEAFDISNTQGAESVASMVVFEEAQPKKEDYR 428 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 KF + VK +D M+ V+ RRF + + ++ F + PD++++DGGK Sbjct: 429 KFKIRT--VKGPNDFESMKEVVFRRFKRALSGDK-----------KFNNLPDLLLIDGGK 475 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 GQL A+ LK+L + I I++A+ + F E ++L LY +QR+ Sbjct: 476 GQLKYARQALKELGLS-FIPTIALAEEFEH-----IFTEGNDEPIILPENSEALYLVQRI 529 Query: 534 RDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDEAHRFA++ HR R K+ S L++I GIG R+ LL++FG ++ I ++S E LAS Sbjct: 530 RDEAHRFALSFHRSLRTKRNLKSVLEDIPGIGKARRLALLKTFGGLEGIKQASLEELASA 589 Query: 593 EGISKKIACKIYNHFH 608 G++KK A +Y +FH Sbjct: 590 PGMNKKAAQAVYEYFH 605 >gi|169344093|ref|ZP_02865079.1| excinuclease ABC, C subunit [Clostridium perfringens C str. JGS1495] gi|169297828|gb|EDS79925.1| excinuclease ABC, C subunit [Clostridium perfringens C str. JGS1495] Length = 620 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 196/619 (31%), Positives = 318/619 (51%), Gaps = 20/619 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 + +P+ PGVY M + G V+YVGKA L+ R++ Y S NH+ ++ M+ I + Sbjct: 7 QLKILPDKPGVYIMKNSLGEVIYVGKAKVLKNRVRQYFQNSKNHSEKVRAMVKNIAEFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK+ PR+NI L+DDK +P+I IT P +Y R+ + Sbjct: 67 IVTDSEMEALILECNLIKKYSPRYNIALKDDKFYPFIKITTNEDFPRVYVTRNFAKDGNR 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ + AV + + +++ F LR+C ++ TR CL + I C PC G IS Sbjct: 127 YFGPYTNGTAVYEVMGLIKKLFPLRTCKKAIVEGGEPTRACLNYHINLCKAPCAGYISKA 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235 +Y E + E L+G + ++ +K+ M +A + ++E A RDR+ A+ I Sbjct: 187 EYWEMIDEIINILNGTDTSIIKKLKLEMEKAAEELEFEKAAKIRDRILAIELISEKQKMF 246 Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D LY ++ C Q F G+ G F ++ + +++S F+ FY Sbjct: 247 TVKEGDEDFIDLYTDEKDGCAQVFFVREGKVTGREHFMIENIGDDPVKEVISSFIASFYG 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350 P+ I + EE E+ L+E ++ G KV I VPK+G+K+ +++ NA + Sbjct: 307 GTAQIPKTIYVPEEIEDQELIEKFLTEKRGSKVWIKVPKKGDKKNLLDMVRNNAKIMIDQ 366 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + + + ++ L + L +P RIE YD S+I G +VG MVV + Sbjct: 367 FKEKMVEEKELNKSALTELADVLGLDSLPTRIEAYDISNIQGVDSVGTMVVFENGKAKNS 426 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVIL 469 YR+F + VK +D MR +L RRFS ++ + + + + F +PD++++ Sbjct: 427 DYRRFKIKS--VKGPNDYESMREILSRRFSHGLEEVNKIKERNLEYSKGKFCIFPDLIMM 484 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ++ A VLK +E I + + K K F E +++ ++ Sbjct: 485 DGGKGQVNIALEVLKDFGIE--IPVCGLVKDHKHRTRGIIF---NNEEILIRRGSGLMNL 539 Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 I R++DE HR+AIT HR R K+ +S L++I IG R+R LL FG++ I ++S E Sbjct: 540 ITRVQDEVHRYAITYHRSLRDKRTLHSILEDIPRIGEKRRRNLLMKFGSIDNIKKASMEE 599 Query: 589 LASIEGISKKIACKIYNHF 607 L GI K+ A I +F Sbjct: 600 LLDTPGIDKRAAESIKQYF 618 >gi|320530670|ref|ZP_08031716.1| excinuclease ABC subunit C [Selenomonas artemidis F0399] gi|320137078|gb|EFW29014.1| excinuclease ABC subunit C [Selenomonas artemidis F0399] Length = 608 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 188/618 (30%), Positives = 309/618 (50%), Gaps = 38/618 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 + +P+ PGVY M D G+++YVGKA L+ R++ Y S+ N ++ M+S + + Sbjct: 8 KLKLLPDTPGVYIMKDERGKIIYVGKAIVLKNRVRQYFQSSRNQAPKVRAMVSHVADFET 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T EVE+L+LEAN+IK+ +PR+NI L+DDKS+PY+ +T + P ++ R Sbjct: 68 IMTANEVESLILEANLIKKHRPRYNIRLKDDKSYPYVKVTMQEDFPRVFITRRVLRDGAR 127 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGP+ +V A+ ++ L+R F LR+C + RPCL + IKRC PC +++ E Y Sbjct: 128 YFGPYTNVTALRDSLKLLKRLFPLRTCR----KMPERPCLEYHIKRCLAPCVDKVTKEDY 183 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + FL G +++ ++ + M A +E+A RD+L ++ + + Sbjct: 184 AAMIRAVLLFLEGRTDDVERELEQRMQLAAEAYHFETAARLRDQLVSVRKAAERQNIVTG 243 Query: 241 RMDCFS--LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D + + C+Q F G+ G F L+ E + +L FL Q+Y Sbjct: 244 AGDQDAVGMARAGAGVCVQIFFIRGGKMIGREHFLLRGSDEERDEDVLRAFLEQYYNAAT 303 Query: 299 -CPENILLSEEA---EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350 P +LL + E + K+ G +V + P++G KR I+ A NA Sbjct: 304 FVPREVLLPLDIGAAERAVIERWLADKKGGGRVALLTPQRGTKRDIVVMATGNARKFLAD 363 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 T++ + + +++ + L P R+E +D SH G V MVV K+ Sbjct: 364 EETRRALADEQNMGAVEELGRYLGLKKAPYRMECFDISHNQGQETVASMVVFEGGMPKKS 423 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YR+F + + DD MR V RR+ L E PD++I+D Sbjct: 424 DYRRFKIRSAEG-KPDDFLSMREVTTRRYVGLPAEE----------------LPDLIIID 466 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQLS+A +++ + + ++ +AK + F + E + L R LY + Sbjct: 467 GGKGQLSSALEIIRGAAGHSAVPVVGLAKQFEL-----IFVEGESEPVELPRRSDALYLV 521 Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 QR+RDEAHRFAIT HR R K+ S LD I G+GP R++ L + FGT++ + +S + L Sbjct: 522 QRIRDEAHRFAITYHRNLRGKRNLVSVLDHIVGVGPKRRQALREHFGTIEKMKAASVDEL 581 Query: 590 ASIEGISKKIACKIYNHF 607 S+ G+++ A +++ F Sbjct: 582 VSVRGMNRPAAEAVFHFF 599 >gi|153814597|ref|ZP_01967265.1| hypothetical protein RUMTOR_00811 [Ruminococcus torques ATCC 27756] gi|145848091|gb|EDK25009.1| hypothetical protein RUMTOR_00811 [Ruminococcus torques ATCC 27756] Length = 624 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 199/619 (32%), Positives = 318/619 (51%), Gaps = 25/619 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M D ++YVGKA +L+ R++ Y S+ N +I M++ I + Sbjct: 18 ELKKLPARPGVYLMHDERDEIIYVGKAISLKNRVRQYFQSSRNKGVKIEQMVTHIRRFEY 77 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK P++N +L DDK++P+I +T P + R + Sbjct: 78 IVTDSELEALVLECNLIKEHHPKYNTMLMDDKTYPFIKVTVNEPFPRVLLARKMLKDKAK 137 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV TI+ + + + +RSC ++ + + RPCL + IK+C PC G IS E Sbjct: 138 YFGPYTSAQAVRDTIDLIHKLYHVRSCNRNLPKDIGKERPCLNYHIKQCDAPCQGYISQE 197 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235 Y + E KFL+G + +++ MN A+ ++E AI +R+ + ++ I Sbjct: 198 DYGAAIAEVLKFLNGNYDVILKELEEKMNTASENLEFERAIEYRELINSVKKIAQKQKIT 257 Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 DS D + A +Q F G+ G F+L+ S + IL F++Q+Y Sbjct: 258 DSSGEDRDILAAASEGEDAVVQVFFIRGGRLIGRDHFYLRISSGEKTSGILDSFIKQYYA 317 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351 P P +++ EE ++ L+E + G KV + VPK+G K K++E A NA Sbjct: 318 GTPYIPGELMIQEEIKDRELIETWLTSKRGQKVTVKVPKKGTKEKLVELASDNAKLVLSK 377 Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E +K+ + I R+E YD S+ G +VG MVV +N Sbjct: 378 DKERMRREEGRTIGAVKEIEALLGISQIR-RMEAYDISNTNGFESVGSMVVYERGKPKRN 436 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YRKF + ++ DD MR VL RRF+ +K E + F +PD++++D Sbjct: 437 DYRKFKIKG--IQGADDYGSMREVLTRRFTHGLKEREE-----NGELGKFTVFPDLILMD 489 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ++ A VL+ LN+ I + + K F + E + + I Sbjct: 490 GGKGQVNVALQVLEDLNL--NIPVCGMVKDDFHRTRGLYF---QNEEISIEKSSEAFRLI 544 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DEAHRFAI HR+ R K +S LD+I GIGP R++ L++ + ++ I +S E L Sbjct: 545 TRIQDEAHRFAIEYHRQLRGKGQVHSILDDIEGIGPARRKALMRHYLSLDAIKAASIEEL 604 Query: 590 ASIEGISKKIACKIYNHFH 608 A + +++K A +YN FH Sbjct: 605 AKLPSMNEKAAQAVYNFFH 623 >gi|110800325|ref|YP_694801.1| excinuclease ABC subunit C [Clostridium perfringens ATCC 13124] gi|168210457|ref|ZP_02636082.1| excinuclease ABC, C subunit [Clostridium perfringens B str. ATCC 3626] gi|119367643|sp|Q0TU89|UVRC_CLOP1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|110674972|gb|ABG83959.1| excinuclease ABC, C subunit [Clostridium perfringens ATCC 13124] gi|170711527|gb|EDT23709.1| excinuclease ABC, C subunit [Clostridium perfringens B str. ATCC 3626] Length = 620 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 197/619 (31%), Positives = 319/619 (51%), Gaps = 20/619 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 + +P+ PGVY M + G V+YVGKA L+ R++ Y S NH+ ++ M+ I + Sbjct: 7 QLKILPDKPGVYIMKNSLGEVIYVGKAKVLKNRVRQYFQNSKNHSEKVRAMVKNIAEFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK+ PR+NI L+DDK +P+I IT P +Y R+ + Sbjct: 67 IVTDSEMEALILECNLIKKYSPRYNIALKDDKFYPFIKITTNEDFPRVYVTRNFAKDGNR 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ + AV + + +++ F LR+C ++ TR CL + I C PC G IS Sbjct: 127 YFGPYTNGTAVYEVMGLIKKLFPLRTCKKAIVEGGEPTRACLNYHINLCKAPCAGYISKA 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235 +Y E + E L+G + ++ +K+ M +A + ++E A RDR+ A+ I Sbjct: 187 EYWEMIDEIINILNGTDTSIIKKLKLEMEKAAEELEFEKAAKIRDRILAIELISEKQKMF 246 Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D LY ++ C Q F G+ G F ++ S+ +++S F+ FY Sbjct: 247 TVKEGDEDFIDLYTDEKDGCAQVFFVREGKVTGREHFMIENISDDPVKEVISSFIASFYG 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350 P+ I + EE E+ L+E ++ G KV I VPK+G+K+ +++ NA + Sbjct: 307 GTAQIPKTIYVPEEIEDQELIEKFLTEKRGSKVWIKVPKKGDKKNLLDMVRNNAKIMLDQ 366 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + + + ++ L + L +P RIE YD S+I G +VG MVV + Sbjct: 367 FKEKMVEEKELNKSALTELADVLGLDSLPARIEAYDISNIQGVDSVGTMVVFENGKAKNS 426 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVIL 469 YR+F + VK +D MR +L RRFS ++ + + + + F +PD++++ Sbjct: 427 DYRRFKIKS--VKGPNDYESMREILSRRFSHGLEEVNKIKERNLEYSKGKFCIFPDLIMM 484 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ++ A VLK +E I + + K K F E +++ ++ Sbjct: 485 DGGKGQVNIALEVLKDFGIE--IPVCGLVKDHKHRTRGIIF---NNEEILIRRGSGLMNL 539 Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 I R++DE HR+AIT HR R K+ +S L++I IG R+R LL FG++ I ++S E Sbjct: 540 ITRVQDEVHRYAITYHRSLRDKRTLHSILEDIPRIGEKRRRNLLMKFGSIDNIKKASMEE 599 Query: 589 LASIEGISKKIACKIYNHF 607 L GI K+ A I +F Sbjct: 600 LLDTPGIDKRAAESIKQYF 618 >gi|295399437|ref|ZP_06809419.1| excinuclease ABC, C subunit [Geobacillus thermoglucosidasius C56-YS93] gi|294978903|gb|EFG54499.1| excinuclease ABC, C subunit [Geobacillus thermoglucosidasius C56-YS93] Length = 590 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 181/613 (29%), Positives = 300/613 (48%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG Y M D G V+YVGKA L+ R++SY H + ++++I + + VT + Sbjct: 12 LPEQPGCYLMKDKNGTVIYVGKAKVLKNRVRSYFTGT-HDGKTQRLVNEIADFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 VEAL+LE N+IK+ P++N++L+DDKS+P+I IT K P L R G YFGP+ Sbjct: 71 NVEALILEMNLIKKYDPKYNVMLKDDKSYPFIKIT-AEKHPRLVITRKVKKDGGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A +T L R + LR C+ R CL + + +C PC +S ++ E V Sbjct: 130 PNVQAANETKKLLDRIYPLRKCSTMP----NRVCLYYHMGQCLAPCVHPVSEQQNKEIVE 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 + +FL+GG +KE++A M +A ++E A +RD+++ + + N Sbjct: 186 QIVRFLNGGYKEVKEELAEKMRKAAEALEFERAKEYRDQISHIEATMEKQKMVINDFVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F ++K C+Q F G+ + + + P+ Sbjct: 246 DVFGYAYDKGWMCVQVFFIRQGKLIERDVSMFPMYQDPDEEFLTFLGQFYTKANHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 ++L + + + +V + PK+G+K+++++ A NA Sbjct: 306 VILPADMDGE-------LAEQLLEVTVVQPKKGKKKELVDLASKNAAIALQEKFYLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ K +P RIE +DNS+I G V MVV + K +YRK+ + Sbjct: 359 EERTIKAVENLGKILGIPTP-HRIEAFDNSNIHGADPVSAMVVFIDGKPEKKEYRKYKVK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++++K + PD++I+DGGKG L+A Sbjct: 418 T--VEGPDDYESMREVVRRRYTRVLKEK--------------LPLPDLIIIDGGKGHLAA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ VL+ +L ++ I + +AK K E + + L Y +QR++DE Sbjct: 462 ARDVLENELGLD--IPLAGLAKDDKHRTS-ELIMGNPPQVVPLARNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFA+T HR+ R K S LD+I G+G RK+ LL+ FG++K + ++ E L I Sbjct: 519 HRFAVTFHRQTRGKTMLRSVLDDIPGVGEKRKKALLKHFGSIKNMREATVEELQKA-NIP 577 Query: 597 KKIACKIYNHFHK 609 + +A KIY + Sbjct: 578 RSVAEKIYEKLRE 590 >gi|119367631|sp|Q7WH66|UVRC_BORBR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|119367633|sp|Q7W9J4|UVRC_BORPA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C Length = 609 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 215/614 (35%), Positives = 328/614 (53%), Gaps = 28/614 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+ LD AG V+YVGKA +L+KR+ SY N + RI M++++ ++ TVT Sbjct: 13 DLPHLPGVYRHLDAAGEVMYVGKARDLKKRVSSYFQKNLASPRIAQMVAKVASVDVTVTR 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L+PR+NIL RDDKS+PY+LIT H P + +R +++ +G YFGP Sbjct: 73 SEAEALLLENNLIKSLRPRYNILFRDDKSYPYLLIT-GHAWPRIAYYRGATSKRGQYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + + AV +TI LQ+ F LR+C D+VF +R+RPCLL QI RCS PC G I + Y V Sbjct: 132 YPNSWAVRETIQILQKVFRLRTCEDTVFANRSRPCLLHQIGRCSAPCVGVIEAGDYAHDV 191 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNR 241 A +FL+G + ++I M QA+ + +E A + RD++ +LS + + + + Sbjct: 192 QRAVRFLNGEAREVMDEIEARMLQASTELRFEEAAVLRDQMGSLSKVLHQQTMENVGGDD 251 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D ++ C+ G++ G FF AQ+L F+ Q Y D P Sbjct: 252 TDVIAVASAGGKICVNLAMVRGGRHLGDKPFFPTHAEGEQPAQVLEAFVAQHYADGAMPP 311 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 ++ S ++ L+ + + ++ QG +R +EQA NA + + L+ + Sbjct: 312 VLVCSHALPDSGLVGLLAEQGGTRAARVLTRPQGVRRSWLEQAQKNAEMALARALTESGA 371 Query: 362 HQMILKDFTKKFALPHIPK-----RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + L + RIE +D SH G + VV + + YR++N Sbjct: 372 RAGRTLALAEALDLDTDEESLDALRIECFDISHTAGEATQASCVVFLHHDMQPSLYRRYN 431 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + DD A MR VL RRF ++ E P +V++DGGKGQ+ Sbjct: 432 IVG--ITPGDDYAAMRQVLTRRFGKVADGE--------------APMPGLVLIDGGKGQV 475 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRD 535 A+ V +L ++ + +++ +AKG R G+E G + L L I ++RD Sbjct: 476 EVARQVFVELGLDIQ-SLVGVAKGEGRKVGLETLVFADGRPPVALGKESAALMLIAQVRD 534 Query: 536 EAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFAIT R RR K S L+EI GIG R++ LL FG + +S +S E LAS+EG Sbjct: 535 EAHRFAITGMRARRAKTRNVSRLEEIEGIGARRRQRLLARFGGLSGVSSASIEDLASVEG 594 Query: 595 ISKKIACKIYNHFH 608 IS+++A +IY+ H Sbjct: 595 ISQELAVRIYDALH 608 >gi|328881629|emb|CCA54868.1| Excinuclease ABC subunit C [Streptomyces venezuelae ATCC 10712] Length = 658 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 181/623 (29%), Positives = 308/623 (49%), Gaps = 33/623 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 Q+P+ PGVY+ D RV+YVGKA +L++R+ +Y + R M++ ++ + Sbjct: 10 KPGQIPDSPGVYKFRDEHRRVIYVGKAKSLRQRLANYFQPITSLHPRTATMVTTAASVEW 69 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TEVEAL LE + IK PRFN+ RDDKS+PY+ +T + P + R Sbjct: 70 TVVSTEVEALQLEYSWIKEYDPRFNVKYRDDKSYPYLAVTMNEEFPRVQVMRGHKKKGVR 129 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISS 177 YFGP+A A+ +T++ + R F +R+C+ VFR+ RPCLL I +CS PC G ++ Sbjct: 130 YFGPYAHAWAIRETVDLMLRVFPVRTCSAGVFRNAASAGRPCLLGYIGKCSAPCVGRVTP 189 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E++ E E F++G ++ + M A +YE A RD + AL + Sbjct: 190 EEHRELAEEFSDFMAGRTGTYIRRLEKQMMLAAEDMEYEKAARLRDDIEALRRAMEKSAV 249 Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D +L ++ A +Q G+ RG + A ++ + ++Q Y Sbjct: 250 VLADATDADLIALAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEAVDTAGLVEHAIQQLY 309 Query: 295 TDKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 ++ P+ +L+ E+T + + G V + +P++G+K+ ++ NA ++ Sbjct: 310 GEESGDTVPKEVLVPALPEDTEAVTAWLAGRRGSNVSLRIPQRGDKKDLMATVARNAQQA 369 Query: 352 HTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 + S L++ + L P RIE +D SH+ G V MVV + Sbjct: 370 LVLHKTKRASDLTTRSRALEEIAEALDLDSAPLRIECFDISHLQGEDVVASMVVFEDGLP 429 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL----------NFHPKKQE 457 K++YR+F + + QDD M V+ RRF + + +E + + Sbjct: 430 RKSEYRRFQIKG--FEGQDDVRSMHEVIGRRFRRYLAEKEKTGEWDAEGVVEDPDETGRP 487 Query: 458 YSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA 517 F P +V++DGG+ Q++AA+ L +L +++ I + +AK + E + + Sbjct: 488 KRFAYPPQLVVVDGGQPQVAAARRALDELGIDD-IAVCGLAKRLE-----EVWLPGDDDP 541 Query: 518 LVLNMRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFG 576 +VL LY +QR+RD AH FAI R +R K+ SPLD + G+G RKR L++ FG Sbjct: 542 VVLPRSSEGLYLLQRVRDTAHDFAIRYQRSKRAKRIRTSPLDAVPGLGDTRKRALIKHFG 601 Query: 577 TVKMISRSSPETLASIEGISKKI 599 +VK + +++ E + + G+ +K Sbjct: 602 SVKRLRQATIEQICEVPGMGRKT 624 >gi|118472646|ref|YP_887394.1| excinuclease ABC subunit C [Mycobacterium smegmatis str. MC2 155] gi|189038068|sp|A0QWV6|UVRC_MYCS2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|118173933|gb|ABK74829.1| excinuclease ABC, C subunit [Mycobacterium smegmatis str. MC2 155] Length = 706 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 187/643 (29%), Positives = 300/643 (46%), Gaps = 47/643 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA +L+ R+ SY + R M+ ++ +TV Sbjct: 13 SIPVEPGVYRFRDPHGRVIYVGKAKSLRSRLTSYFADITSLAPRTRQMVMTAGSVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE N IK PRFN+ RDDKS+P + +T + P L +R YFG Sbjct: 73 TTEVEALQLEYNWIKEFDPRFNVRYRDDKSYPVLAVTLNEEYPRLMVYRGPRRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRT---RPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F R+C+ VF+ RPCLL I +CS PC G +S+E++ Sbjct: 133 PYSHAWAIRETLDLLTRVFPARTCSAGVFKRHKQIDRPCLLGYIDKCSAPCVGRVSAEQH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + V + FL G L + + + M A + D+E A RD ++AL ++ Sbjct: 193 RQIVLDFCDFLGGKTDRLAKDMEQQMTAAAEQLDFERAARLRDDISALKRALEKQAVVFG 252 Query: 241 R---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE-----------STNAQIL 286 D + + A +Q G+ RG + ++ SE S Q++ Sbjct: 253 DGTDADVVAFADDDLEAAVQVFHVRGGRVRGQRGWIVEKSSEPAATGDADLGQSGQEQLV 312 Query: 287 SYFLRQFYTD----------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKIT 330 FL QFY + P P +L+ L G +V + Sbjct: 313 EQFLTQFYGEQAELGSASDTGGDEATNPVPRQVLVPVLPPNADELATWLSGLRGSRVSLR 372 Query: 331 VPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI----LKDFTKKFALPHIPKRIEIYD 386 VP +G+KR + E NA + Q L+ + L P RIE D Sbjct: 373 VPVRGDKRALAETVQRNAQEALAQHKLKRAGDFNARSEALQSIQEALGLADAPLRIECVD 432 Query: 387 NSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKN 445 SH+ G V +VV + K+ YR + + + DD A + V RRF + + Sbjct: 433 ISHVQGTDVVASLVVFEDGLPRKSDYRHYAIREAAGDGRSDDVASIAEVTRRRFLRHTSD 492 Query: 446 EENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSA 505 + + +++ F P++ ++DGG Q++AA VL+ L V++ + +I +AK + Sbjct: 493 SQP-DPSAEQRPRRFAYPPNLFVVDGGAPQVNAAAAVLEDLGVDD-VAVIGLAKRLE--- 547 Query: 506 GMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIG 564 E + + + ++L LY +QR+RDEAHRFAI+ HR +R K S LD + G+G Sbjct: 548 --EVWVPSEPDPVILPRNSEGLYLLQRVRDEAHRFAISYHRSKRSKRMTASALDSVRGLG 605 Query: 565 PLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 R++ L+ FG+V + ++ + + ++ GI A + Sbjct: 606 EHRRKALVAHFGSVARLKEATVDEITAVPGIGVATARAVQEAL 648 >gi|68536082|ref|YP_250787.1| excinuclease ABC subunit C [Corynebacterium jeikeium K411] gi|90111064|sp|Q4JVI8|UVRC_CORJK RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|68263681|emb|CAI37169.1| excinuclease ABC, subunit C [Corynebacterium jeikeium K411] Length = 690 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 193/686 (28%), Positives = 320/686 (46%), Gaps = 87/686 (12%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY D RV+YVGKA NL+ R+ +Y + R M+ N++++TV Sbjct: 12 SIPTDPGVYTFRDAHERVIYVGKAKNLRARLSNYFQDLDQLHPRTRAMVQSANHVQWTVV 71 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E+EAL LE IKR PRFN++ RDDK++P + I+ K +IP + +R YFG Sbjct: 72 SSELEALNLEYTWIKRFNPRFNVMYRDDKTYPMLAISVKEQIPRAFMYRGPRRKGVRYFG 131 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P+ A+ +T+ SL R F +R+C+ V+R RPCLL I RCS PC G+I+ E + Sbjct: 132 PYPKAWAIRETLESLTRVFPIRTCSAGVYRRHEALGRPCLLGYIDRCSAPCVGKITPEDH 191 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 V + FL+G + ++ + M QA+ D+E A RD+L A+ +++ Sbjct: 192 RALVDQFSSFLAGNTEPVLRRVRKEMEQASENLDFERAASLRDQLQAMQKSMERQAVVFS 251 Query: 241 RM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D + ++ A +Q G+ G + ++ + + ++++ F+ QFY + Sbjct: 252 DNTDADLIAFVADELEAAVQIFHVRGGRIHGQRGWVVER-EDLSEEKLVADFITQFYGET 310 Query: 298 ---------------------------------------------PCPENILLSEEAEET 312 P P IL+ ++ Sbjct: 311 AELAKATETQVGGASGPEVDRDLARAINPAAAQDLGDLVGDVQVTPVPREILVHAMPDDA 370 Query: 313 SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI----SHQMILKD 368 L G ++I VP++G+K+ ++ A NA ++ Q + LK+ Sbjct: 371 DDLAAWLTSLRGSNMQIRVPQRGDKKALMTTAETNATQALAQHKLKRAGDITARSAALKE 430 Query: 369 FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DD 427 + + P RIE D SHI G V +VV + K YR++ + DD Sbjct: 431 LQEALWMDESPLRIECTDISHIQGTDVVASLVVFEDGLPKKADYRRYKIRDAAGDGHSDD 490 Query: 428 CAMMRMVLERRFSQLIKNEENLN----------------------FHPKKQEYSFPSWPD 465 A + V+ RRF + +++ + P ++ F P Sbjct: 491 VASIAEVVRRRFKRYQQDKSAVPAGDDAGDLLEGETELEDNSAEGTDPATEKRKFAYPPQ 550 Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525 + I+DGG Q++AAQ VL +L V N +T++ IAK + E + + +++ P Sbjct: 551 LFIVDGGLPQVNAAQEVLDELGV-NDVTLVGIAKRLE-----EIWVPGEEYPIIVPRNSP 604 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 LY +Q LRDEAHRFAIT HR++R + S LD+I G+GP R++ L++ FG+V + + Sbjct: 605 ALYLVQNLRDEAHRFAITFHRQQRSARMRRSKLDDIPGLGPKRRKQLVKEFGSVARVKEA 664 Query: 585 SPETLASIEGISKKIACKIYNHFHKN 610 S E +A++ G K+A I++ + Sbjct: 665 SVEDIAALPGFGPKLAQLIHDALNAE 690 >gi|212212426|ref|YP_002303362.1| excinuclease ABC subunit C [Coxiella burnetii CbuG_Q212] gi|226698347|sp|B6IZT9|UVRC_COXB2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|212010836|gb|ACJ18217.1| excinuclease ABC subunit C [Coxiella burnetii CbuG_Q212] Length = 609 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 221/618 (35%), Positives = 338/618 (54%), Gaps = 26/618 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P GVYQM D G+V+YVGKA NLQKR+ SY + + M++Q+ +I+ T+ Sbjct: 10 LKTLPTGSGVYQMQDAQGKVIYVGKARNLQKRVSSYFRRQLDS-KTQAMMAQVQSIQTTI 68 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T E EALLLEA+ IK+ +PR+N+LLRDDKS+PY+ + K P L +R + G YF Sbjct: 69 TRNENEALLLEASFIKQFRPRYNVLLRDDKSYPYLYLATHQKFPRLDFYRGAKKAPGRYF 128 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +V + + +Q+ F LR C++S F++RTRPCL +QIKRC+ PC G ++ ++Y Sbjct: 129 GPYPNAGSVRENLALIQKLFKLRQCSESFFKNRTRPCLQYQIKRCTAPCVGYVNEQEYRR 188 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YN 240 V +A F G N + K+ M A+ +E A +RD++ L +Q Sbjct: 189 QVEDAILFFEGKNDQVIIKLTERMEVASENLVFEEAAHYRDQIRQLRRLQKQQIITGGKG 248 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT----D 296 +D + + F G+ G FF T +T L F+ Q+Y + Sbjct: 249 NIDIIGIAESNGAIGFAILFIRSGRMIGHKPFFPNTPLGTTLQTALVEFIPQYYLSPLRN 308 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 PE I+ SE E+ ++ + K+ IT K+ ++ A +NA ++ +Q L Sbjct: 309 GDIPERIVTSEPLEDRLWIQRALSSGLNRKLAITDQKRAPYKQWQAMAALNAAQALSQHL 368 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + + + + L+ K ALP+ RIE +D SH +G + V VV GE G +K YR+FN Sbjct: 369 AQKNTFALKLEAIQKSLALPNPIARIECFDISHTLGEATVASCVVFGEEGPIKKDYRRFN 428 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + V DD +R L RR+ +L + E PDV+++DGG GQL Sbjct: 429 I--SGVTPGDDYGALRQALTRRYVRLKEGE--------------GILPDVLLIDGGMGQL 472 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535 A VL++L V I + +IAKGP R AG+EK FV + E + L + + IQ++RD Sbjct: 473 RQAAEVLEELQVSGVI-LTAIAKGPGRKAGLEKLFVWGRREEIHLPADNIAFHLIQQIRD 531 Query: 536 EAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFAIT H RR K+ S L EI GIGP R++ LL+ FG ++ + R+S E +A + G Sbjct: 532 EAHRFAITAHCNRRAKRRVESTLQEIEGIGPKRRQKLLKYFGGLQELQRASIEEIARVPG 591 Query: 595 ISKKIACKIYNHFHKNTS 612 +S+ +A IY+ H++ Sbjct: 592 VSETLAKAIYDDCHQHKG 609 >gi|153854576|ref|ZP_01995846.1| hypothetical protein DORLON_01841 [Dorea longicatena DSM 13814] gi|149752885|gb|EDM62816.1| hypothetical protein DORLON_01841 [Dorea longicatena DSM 13814] Length = 617 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 198/622 (31%), Positives = 330/622 (53%), Gaps = 25/622 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M D ++YVGKA +L+ R++ Y S+ N +I M++ I+ + Sbjct: 9 ELKKLPGKPGVYLMHDEKDAIIYVGKAISLKNRVRQYFQSSRNKGAKIEQMVTHISRFEY 68 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK +P++N +L DDK++P+I +T P + R + Sbjct: 69 IVTDSELEALVLECNLIKEHRPKYNTMLMDDKTYPFIKVTVNEPFPRVMMARRMKKDKAK 128 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV+ TI +++ + +RSC S+ + + RPCL + I +C PC G IS E Sbjct: 129 YFGPYTSTGAVKDTIELIRKLYHIRSCNRSLPKDIGKERPCLNYHIHQCYAPCQGYISRE 188 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + + E +FL+G + +++ M A+ ++E AI +R+ LA++ I Sbjct: 189 EYRKSIDEVVRFLNGNYDPILKELEEKMLDASENLEFEKAIEYRELLASVQKIAQKQKIT 248 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D ++ A +Q F G+ G F+LK T ++ILS F++QFY Sbjct: 249 DTAGDDRDIIAMASEGEDAVVQVFFIRGGRLIGRDHFYLKIAENDTKSEILSSFIKQFYA 308 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351 P P ++L EE E+ ++E + +KV++ +PK+G K K++E A NA Sbjct: 309 GTPYIPAELMLPEEIEDQEIIEEWLTTRREHKVRLRIPKKGTKEKLVELAQKNAQMVLKN 368 Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E +K+ K L R+E YD S+ G +VG MVV +N Sbjct: 369 DKERLKREEGRTIGAVKELEKILGLT-GIIRMEAYDISNTNGFDSVGSMVVYEHGKPKRN 427 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YRKF + V+ DD A M VL RRF ++ ++ + + F ++PD++++D Sbjct: 428 DYRKFKIKS--VQGPDDYASMNEVLTRRFEHGLRERQD-----ESETGGFQAFPDLIMMD 480 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GG+GQ++ A VL+KLN I + + K F L ++ I Sbjct: 481 GGRGQVNIALEVLEKLN--QHIPVCGMVKDDNHRTRGLYF---NNVELPIDRNSECFRLI 535 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DEAHRFAIT HR+ R K +S LD+I G+GP R++ L++SF ++ I ++ + L Sbjct: 536 TRIQDEAHRFAITFHRQLRSKGQVHSILDDIPGVGPARRKDLMRSFENIEAIRNATVDDL 595 Query: 590 ASIEGISKKIACKIYNHFHKNT 611 + +++K A ++Y FH++T Sbjct: 596 KELPSMNEKSAQEVYKFFHQDT 617 >gi|240143365|ref|ZP_04741966.1| excinuclease ABC subunit C [Roseburia intestinalis L1-82] gi|257204738|gb|EEV03023.1| excinuclease ABC subunit C [Roseburia intestinalis L1-82] Length = 626 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 195/625 (31%), Positives = 327/625 (52%), Gaps = 21/625 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRF 60 +++P+ PGVY M D ++Y+GKA +L+KR+ Y ++ + M+ QI + Sbjct: 7 ELKKLPDQPGVYIMHDSHDAIIYIGKAVSLRKRVHQYFQPSHDEGIKKAQMVKQIARFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE N+IK P++N +LRDDK++PYI +T P + R + Sbjct: 67 IITDSELEALVLECNLIKEHCPKYNTMLRDDKTYPYIRVTVGEDFPRVLFSRQQKKDKSR 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV+ TI + + + LR+C + R + RPCL + I +C PC G IS E Sbjct: 127 YFGPYTSAGAVKDTIELINKLYQLRTCNRVLPRDTGKERPCLNYHIHQCQAPCQGYISRE 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y E + A +FL+G + + + MN+A+ ++E AI +R+ L ++ I Sbjct: 187 EYRERIDAAVEFLNGNYAPILKSLEEKMNEASENLEFEKAIEYRELLGSVRQIAQKQKIT 246 Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D +L + A +Q F G+ G F+++ +E T +QIL+ FL+QFY+ Sbjct: 247 HTDGEDKDIIALASDDRDAVVQVFFIRDGKLIGRDHFYVRVGTEDTKSQILTTFLKQFYS 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350 P P I+L EE E+ +L ++ G +V I VP++G K K++E A NA + Sbjct: 307 GTPFIPREIMLPEEIEDHEVLAEWLTEKRGARVYIRVPQKGMKEKLVELAQKNAELVLSQ 366 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E +K+ + + R+E +D S+I G VG M+V + ++ Sbjct: 367 DREKIKREEGRTIGAMKEIEHLLGMEGLS-RVEAFDISNINGFETVGSMIVYEKGKPKRS 425 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE-YSFPSWPDVVIL 469 YRKF L + DD A M VL RRF+ + ++ L +E SF +PD++++ Sbjct: 426 DYRKFKLKT--ITGPDDYASMHEVLTRRFTHGMHEKKELAEREMSEEYGSFTRFPDLIMM 483 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGG+GQ++ A VL +L + I + + K + + + ++ Sbjct: 484 DGGRGQVNIALKVLDELKI--NIPVCGMVKDDNHRTRG---LYYQNKEIPIDRTSEGFKL 538 Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 I R++DEAHRFAI HR R K +S LD+I GIG R++ L++ F +++ I +S E Sbjct: 539 ITRIQDEAHRFAIEYHRSLRSKEQVHSVLDDIPGIGSARRKALMRRFQSLEAIREASEEE 598 Query: 589 LASIEGISKKIACKIYNHFHKNTSH 613 LA E ++++ A +Y+ F ++ Sbjct: 599 LAKTESMNEQAARAVYSFFREDKHG 623 >gi|255659412|ref|ZP_05404821.1| excinuclease ABC subunit C [Mitsuokella multacida DSM 20544] gi|260848374|gb|EEX68381.1| excinuclease ABC subunit C [Mitsuokella multacida DSM 20544] Length = 623 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 199/618 (32%), Positives = 313/618 (50%), Gaps = 38/618 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 + +P+ PGVY M D GR++YVGKA L+ R++ Y + NH+ ++ M+S I + Sbjct: 8 KLKLLPDSPGVYIMKDANGRIIYVGKAVVLKNRVRQYFQHNKNHSPKVKAMVSHIADFEI 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +EVEAL+LE N+IK+ +P +NI L+DDKS+PY+ +T + + P ++ + Sbjct: 68 IMTHSEVEALILECNLIKKHRPHYNISLKDDKSYPYVKVTVQEEYPRVFLTHRVTKDGAR 127 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGP+ V AV +++ L++ F LR+C RPCL + IKRC PC G+++ E Y Sbjct: 128 YFGPYTDVTAVHQSLKLLRKLFPLRTCRHLQ----ERPCLEYHIKRCLAPCVGKVTEEDY 183 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + FL G +++ ++ M QA +E+A RD+L A+ I + + Sbjct: 184 AAMIRAVLLFLEGRTADVERELKVRMEQAAEAFHFETAARLRDQLRAVQKIAEKQNIVTG 243 Query: 241 RMDCFSL--YHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D ++ ++ C+Q F G+ G F L+ E ++A IL+ FL Q+Y Sbjct: 244 AGDQDAIGLARSEIGVCVQVFFIRAGKMIGREHFLLQGSEEESDADILAAFLSQYYHRAA 303 Query: 299 -CPENILLSEEAEETS---LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351 P ILL E L K+ G KV++ +P++G KR I+ A NA + Sbjct: 304 FVPREILLPMAIAEAEQALLESWLTEKKQGTKVQLLLPQRGTKRDIVAMAESNAAKYLAD 363 Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + + +++ L +P R+E +D SHI G V MVV K+ Sbjct: 364 EAARIKQADEKTMGAVRELGHYLGLKKMPYRMECFDISHIQGSETVASMVVFEGGLPKKS 423 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YR+F + + DD MR V RR+ L + E P+++++D Sbjct: 424 DYRRFKIQSTEG-KPDDFLSMREVTTRRYVGLPEEE----------------LPNLIVID 466 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQLS+A +++ + ++ +AK + F + E +VL LY I Sbjct: 467 GGKGQLSSALEIIRGAGGHKDVPVVGLAKQFEL-----VFKEGESEPVVLPRHSQALYLI 521 Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 +R+RDEAHRFAIT HRK R K+ S LD I GIGP R++ L FGT+ I +S E L Sbjct: 522 ERIRDEAHRFAITYHRKLRGKRNLVSVLDHIVGIGPKRRQALRSHFGTIARIREASVEEL 581 Query: 590 ASIEGISKKIACKIYNHF 607 G+++ A +Y+ F Sbjct: 582 QQAPGMNRPAAEAVYHFF 599 >gi|59712233|ref|YP_205009.1| excinuclease ABC subunit C [Vibrio fischeri ES114] gi|75353751|sp|Q5E4C5|UVRC_VIBF1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|59480334|gb|AAW86121.1| excinuclease UvrABC, endonuclease subunit [Vibrio fischeri ES114] Length = 608 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 199/617 (32%), Positives = 317/617 (51%), Gaps = 31/617 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M + V+YVGKA +L+KR+ SY SN + + ++S I+ + TV Sbjct: 10 LKSVTHQPGVYRMYNAEADVIYVGKAKDLKKRLSSYFRSNVPSEKTKALVSHIHQVDVTV 69 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N IK+ P++N+LLRDDKS+PYI I+ +HK P + HR +G YF Sbjct: 70 THSETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFIS-QHKHPRISIHRGVKRKKGEYF 128 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYM 181 GP+ AV ++++ +Q+ F +R C DSV+ +R RPCL+ QI RC PC +S E+Y Sbjct: 129 GPYPDSGAVRESLHLIQKLFPIRQCEDSVYANRHRPCLMHQIGRCLAPCVKGIVSDEEYK 188 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 E + FL G + + + + + M A+ ++E A I RD++ A+ +Q + Sbjct: 189 EQTDFIRLFLQGKDRQVIQTLVKQMESASQSLNFEKAAIIRDQIQAMRRVQEQQYVSDDS 248 Query: 242 MDC---FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-- 296 D LAC+ G+ G+ +FF K + + ++ FL Q+Y + Sbjct: 249 GDDLDVLGFAIENGLACVHLLMIRQGKILGSRSFFPKIPANTDKEEVFLSFLTQYYLNHT 308 Query: 297 --KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 + P ++ S E L + PK + R + + A NA + T Sbjct: 309 QGRTIPNRVVTSFEFNSEDLERALTELSGRKVIFQLNPKGIKGRYL-KLADTNALTALTS 367 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 K + +++ K + L +R+E +D SH MG V VV + G VK++YR+ Sbjct: 368 KSNHKLTMYQRFKQLEEALVLS-SIQRMECFDISHTMGEKTVASCVVFNQEGPVKSEYRR 426 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 +N+ + DD A M VLERR+S+ + ++ PD++ +DGGKG Sbjct: 427 YNI--AGITGGDDYAAMAQVLERRYSKQLDIDK---------------IPDIIFIDGGKG 469 Query: 475 QLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532 QL+ A V+ K + + ++ IAKG R G+E GE + P L+ IQ Sbjct: 470 QLNRAYEVISKHWEDWPKQPLLLGIAKGVTRKHGLETLVKISGEEFSMPSDSPALHLIQH 529 Query: 533 LRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+H AI HR +R K S L I+G+GP R++ LLQ G ++ + +S E +A Sbjct: 530 IRDESHNHAIGGHRAQRAKVRKTSTLQNIDGVGPKRRQALLQYLGGLQELKSASVEEIAK 589 Query: 592 IEGISKKIACKIYNHFH 608 + GIS +A KI++ Sbjct: 590 VPGISHSLAEKIHDALK 606 >gi|167761265|ref|ZP_02433392.1| hypothetical protein CLOSCI_03670 [Clostridium scindens ATCC 35704] gi|167660931|gb|EDS05061.1| hypothetical protein CLOSCI_03670 [Clostridium scindens ATCC 35704] Length = 612 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 202/619 (32%), Positives = 329/619 (53%), Gaps = 25/619 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M D ++YVGKA +L+ R++ Y S+ N +I M++ I + Sbjct: 7 ELKKLPGKPGVYIMHDEKDNIIYVGKAISLKNRVRQYFQSSRNKGAKIEQMVTHIRRFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK +P++N +L DDK++P+I +T + P + R + Sbjct: 67 IVTDSELEALVLECNLIKEYRPKYNTMLMDDKAYPFIKVTVEEPFPRVMLARKMVKDKSK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV+ TI +++ + +RSC + R + RPCL + I +C PC G IS E Sbjct: 127 YFGPYTSAGAVKDTIELIRKLYQIRSCNRKLPRDIGKERPCLNYHIHQCKAPCQGYISQE 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y E V+E FL+G + +++ M +A+ ++E AI +R+ L ++ I Sbjct: 187 EYRESVNEVIHFLNGNYDIILKELEERMEEASEALEFEKAIEYRELLTSVQKIAQKQKIT 246 Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D ++ + A +Q F G+ G F+LK T ++ILS F++QFY Sbjct: 247 DTAGEDRDILAVAVEEEEAVVQVFFIRGGRLIGRDHFYLKIAKGETQSEILSSFIKQFYA 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351 P P ++L EE E+ +++E K+ G++V++ VPK+G K K++E A NA Sbjct: 307 GTPYIPPRLMLPEEIEDLAVIEEWLTKRRGHRVRLIVPKKGTKEKLVELAKKNAQLVLST 366 Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E +K+ K L I R+E YD S+ G +VG MVV + +N Sbjct: 367 DKERLKREEGRTIGAVKELEKLLGLTGIV-RMEAYDISNTNGFESVGSMVVYEKGRPKRN 425 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YRKF + V+ DD A M VL RRF ++ +E K+ F +PD++++D Sbjct: 426 DYRKFKIKG--VQGADDYASMEEVLTRRFEHGLREKEE-----GKEMGGFTLFPDLILMD 478 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ++ A VL KL + I + + K + E + ++ I Sbjct: 479 GGKGQVNVALRVLDKLRL--NIPVCGMVKDDSHRTRG---LYYQNEEISIDKDSESFKLI 533 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DEAHRFAIT HR+ R + +S LD+I G+GP R++ L++ F ++ I ++ E L Sbjct: 534 TRIQDEAHRFAITFHRQLRSQGQVHSILDDIPGVGPARRKDLMRHFENIEAIKNATVEQL 593 Query: 590 ASIEGISKKIACKIYNHFH 608 + +++K A +YN FH Sbjct: 594 KELPSMNEKSARDVYNFFH 612 >gi|238764986|ref|ZP_04625923.1| UvrABC system protein C [Yersinia kristensenii ATCC 33638] gi|238696755|gb|EEP89535.1| UvrABC system protein C [Yersinia kristensenii ATCC 33638] Length = 588 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 212/606 (34%), Positives = 330/606 (54%), Gaps = 31/606 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D AG V+YVGKA +L+KR+ SY + + + ++ I I TVT TE EALLLE Sbjct: 1 MYDKAGTVIYVGKAKDLKKRLTSYFRAQVASRKTETLVKNIAQIDVTVTHTETEALLLEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK +PR+N+LLRDDKS+P I ++ K P L HR + +G YFGPF + AV +T Sbjct: 61 NYIKLYQPRYNVLLRDDKSYPLIFLS-ADKHPRLAIHRGAKHEKGEYFGPFPNSYAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193 + LQ+ F +R C +SV+R+R+RPCL +QI RCSGPC ++ E+Y V + FLSG Sbjct: 120 LALLQKLFPVRQCENSVYRNRSRPCLQYQIGRCSGPCVTGLVTEEEYQRQVDYVRLFLSG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--DCFSLYHNK 251 + + ++ M A+ +E A RD++ A+ + + D + + Sbjct: 180 KDQQVLTQLISRMEDASRLLHFEDAARIRDQIQAVRRVTEQQFVSGDSEDLDVIGVAFDA 239 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLSE 307 LAC+ F G+ G+ ++F K + + ++++ F+ QFY + P ILL Sbjct: 240 GLACVHVLFIRQGKVLGSRSYFPKVPAGTELSEVVQTFVGQFYLQGSQGRTLPGEILLDF 299 Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367 EE LL S + G K++I +G++ + ++ A NA + +LS + + +K Sbjct: 300 TLEEKDLLASSLSELAGRKIQIQSRPRGDRARYLKLARTNASTALVTRLSQQSTIHQRMK 359 Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427 + K L R+E +D SH MG V VV NG V+++YR++N+ + + DD Sbjct: 360 ELAKILNLD-EINRMECFDISHTMGEQTVASCVVFDANGPVRSEYRRYNI--SGITPGDD 416 Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487 A M VL+RR+ + + +++ PDV+ +DGGKGQLS A V LN Sbjct: 417 YAAMSQVLKRRYGKALDDKK---------------IPDVIFIDGGKGQLSQAFDVFASLN 461 Query: 488 V---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 V + + ++ +AKG R AG+E F+ +GE L P L+ IQ +RD++H AIT Sbjct: 462 VSWDKQKPLLVGVAKGSDRKAGLETLFLAAEGEGFSLPPDSPALHLIQHIRDDSHNHAIT 521 Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR+RR K S L+ I G+GP R+++LL+ G ++ + +S E +A + IS+ +A K Sbjct: 522 GHRQRRSKVKNTSALEMIEGVGPKRRQILLKYMGGLQPLLNASVEEIAKVPSISQALAEK 581 Query: 603 IYNHFH 608 IYN Sbjct: 582 IYNALK 587 >gi|331090011|ref|ZP_08338901.1| UvrABC system protein C [Lachnospiraceae bacterium 3_1_46FAA] gi|330402925|gb|EGG82491.1| UvrABC system protein C [Lachnospiraceae bacterium 3_1_46FAA] Length = 617 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 199/619 (32%), Positives = 318/619 (51%), Gaps = 25/619 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M D ++YVGKA +L+ R++ Y S+ N +I M++ I + Sbjct: 11 ELKKLPARPGVYLMHDERDEIIYVGKAISLKNRVRQYFQSSRNKGVKIEQMVTHIRRFEY 70 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK P++N +L DDK++P+I +T P + R + Sbjct: 71 IVTDSELEALVLECNLIKEHHPKYNTMLMDDKTYPFIKVTVNEPFPRVLLARKMLKDKAK 130 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV TI+ + + + +RSC ++ + + RPCL + IK+C PC G IS E Sbjct: 131 YFGPYTSAQAVRDTIDLIHKLYHVRSCNRNLPKDIGKERPCLNYHIKQCDAPCQGYISQE 190 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235 Y + E KFL+G + +++ MN A+ ++E AI +R+ + ++ I Sbjct: 191 DYGAAIVEVLKFLNGNYDVILKELEGKMNTASENLEFERAIEYRELINSVKKIAQKQKIT 250 Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 DS D + A +Q F G+ G F+L+ S + IL F++Q+Y Sbjct: 251 DSSGEDRDILAAASEGEDAVVQVFFIRGGRLIGRDHFYLRISSGEKTSGILDSFIKQYYA 310 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351 P P +++ EE ++ L+E + G KV + VPK+G K K++E A NA Sbjct: 311 GTPYIPGELMIQEEIKDRELIETWLTSKRGQKVTVKVPKKGTKEKLVELASDNAKLVLSK 370 Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E +K+ + I R+E YD S+ G +VG MVV +N Sbjct: 371 DKERMRREEGRTIGAVKEIEALLGISQIR-RMEAYDISNTNGFESVGSMVVYERGKPKRN 429 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YRKF + ++ DD MR VL RRF+ +K E + F +PD++++D Sbjct: 430 DYRKFKIKG--IQGADDYGSMREVLTRRFTHGLKEREE-----NGELGKFTVFPDLILMD 482 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ++ A VL+ LN+ I + + K F + E + + I Sbjct: 483 GGKGQVNVALQVLEDLNL--NIPVCGMVKDDFHRTRGLYF---QNEEISIEKSSEAFRLI 537 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DEAHRFAI HR+ R K +S LD+I GIGP R++ L++ + ++ I +S E L Sbjct: 538 TRIQDEAHRFAIEYHRQLRGKGQVHSILDDIEGIGPARRKALMRHYLSLDAIKAASIEEL 597 Query: 590 ASIEGISKKIACKIYNHFH 608 A + +++K A +YN FH Sbjct: 598 AKLPSMNEKAAQAVYNFFH 616 >gi|317501240|ref|ZP_07959445.1| excinuclease ABC subunit C [Lachnospiraceae bacterium 8_1_57FAA] gi|316897416|gb|EFV19482.1| excinuclease ABC subunit C [Lachnospiraceae bacterium 8_1_57FAA] Length = 617 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 199/619 (32%), Positives = 318/619 (51%), Gaps = 25/619 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M D ++YVGKA +L+ R++ Y S+ N +I M++ I + Sbjct: 11 ELKKLPARPGVYLMHDERDEIIYVGKAISLKNRVRQYFQSSRNKGVKIEQMVTHIRRFEY 70 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK P++N +L DDK++P+I +T P + R + Sbjct: 71 IVTDSELEALVLECNLIKEHHPKYNTMLMDDKTYPFIKVTVNEPFPRVLLARKMLKDKAK 130 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV TI+ + + + +RSC ++ + + RPCL + IK+C PC G IS E Sbjct: 131 YFGPYTSAQAVRDTIDLIHKLYHVRSCNRNLPKDIGKERPCLNYHIKQCDAPCQGYISQE 190 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235 Y + E KFL+G + +++ MN A+ ++E AI +R+ + ++ I Sbjct: 191 DYGAAIAEVLKFLNGNYDVILKELEEKMNTASENLEFERAIEYRELINSVKKIAQKQKIT 250 Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 DS D + A +Q F G+ G F+L+ S + IL F++Q+Y Sbjct: 251 DSRGEDRDILAAASEGEDAVVQVFFIRGGRLIGRDHFYLRISSGEKTSGILDSFIKQYYA 310 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351 P P +++ EE ++ L+E + G KV + VPK+G K K++E A NA Sbjct: 311 GTPYIPGELMIQEEIKDRELIETWLTSKRGQKVTVKVPKKGTKEKLVELASDNAKLVLSK 370 Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E +K+ + I R+E YD S+ G +VG MVV +N Sbjct: 371 DKERMRREEGRTIGAVKEIEALLGISQIR-RMEAYDISNTNGFESVGSMVVYERGKPKRN 429 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YRKF + ++ DD MR VL RRF+ +K E + F +PD++++D Sbjct: 430 DYRKFKIKG--IQGADDYGSMREVLTRRFTHGLKEREE-----NGELGKFTVFPDLILMD 482 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ++ A VL+ LN+ I + + K F + E + + I Sbjct: 483 GGKGQVNVALQVLEDLNL--NIPVCGMVKDDFHRTRGLYF---QNEEISIEKSSEAFRLI 537 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DEAHRFAI HR+ R K +S LD+I GIGP R++ L++ + ++ I +S E L Sbjct: 538 TRIQDEAHRFAIEYHRQLRGKGQVHSILDDIEGIGPARRKALMRHYLSLDAIKAASIEEL 597 Query: 590 ASIEGISKKIACKIYNHFH 608 A + +++K A +YN FH Sbjct: 598 AKLPSMNEKAAQAVYNFFH 616 >gi|86740338|ref|YP_480738.1| excinuclease ABC subunit C [Frankia sp. CcI3] gi|119367649|sp|Q2JCI3|UVRC_FRASC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|86567200|gb|ABD11009.1| Excinuclease ABC subunit C [Frankia sp. CcI3] Length = 705 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 197/675 (29%), Positives = 305/675 (45%), Gaps = 71/675 (10%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVT 63 +PE PGVY+ D GRVLYVGKA NL+ R+ +Y + R HM+S +++ +TV Sbjct: 13 SIPETPGVYRFRDEHGRVLYVGKAKNLRARLANYFAELHTLHPRTQHMVSSASSVDWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE IK+ PRFN+ RDDKS+P + +T + P L R YFG Sbjct: 73 STEVEALQLEYTWIKQFDPRFNVRYRDDKSYPSLAVTLHEEFPRLQVMRGPKRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P+A A+ +T++ L R F R+C+ VF+ RPCLL I RCS PC G + + + Sbjct: 133 PYAHAWAIRETLDLLLRVFPARTCSGGVFKRAAQVGRPCLLGYIDRCSAPCVGRVDAATH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 E V + F+SG ++ R M QA ++YE A RD + AL + Sbjct: 193 REIVEDFCDFMSGQTGRYLRRLEREMQQAAQAQEYERAARLRDDIGALRRAVEKQAVVLP 252 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D + ++ A + + G+ RG + + E T A ++ FL Q Y D Sbjct: 253 DGTDADVIAFAEDELEAAVAVFYVRGGRVRGQRGWVVDKLDEVTTADLVEQFLTQEYLDG 312 Query: 298 P-----------------------CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQ 334 P IL+ + + G +V++ VP++ Sbjct: 313 TGAASTGTAGSTVPTTTAGSQGEGIPREILVPALPPDVEAVTELLGAARGSRVEVRVPRR 372 Query: 335 GEKRKIIEQALINAHRSHTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHI 390 G+KR ++E NA ++ + S L + + LP P RIE +D S+ Sbjct: 373 GDKRTLLETVERNAKQAFALHRTKRASDLTARSRALAELQEALELPDAPLRIECFDVSNT 432 Query: 391 MGCSAVGCMVVVGENGFVKNQYRKFNLHP-------NDVKTQDDCAMMRMVLERRFSQLI 443 G + V MVV + K++YR+F + DD A M + RRFS+ + Sbjct: 433 QGTNVVASMVVFEDGLPRKSEYRRFAIRGIAGREGAGREGAGDDVASMYETIHRRFSRYL 492 Query: 444 KNEENLN---------------------FHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 + + F P++V++DGG Q++AA Sbjct: 493 AERSRIADIADIAELGDIAGAPGAAQPIDPGTGRPRRFAYPPNLVVVDGGAPQVAAAARA 552 Query: 483 LKKLNVE---NRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 L +L ++ + + +AK + E + + ++L LY +QR+RDEAHR Sbjct: 553 LDELGIDAGPGGVALCGLAKRLE-----EVWLPDTADPVILPRTSEALYLLQRVRDEAHR 607 Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAI HR++R A S LDE+ G+G R++ LL+ FG+V I +S E +A + GI + Sbjct: 608 FAIAYHRQKRSTAMVASALDEVPGLGDTRRKALLRHFGSVAKIRAASAEQIAQVSGIGPR 667 Query: 599 IACKIYNHFHKNTSH 613 A I ++ Sbjct: 668 TAAAIVTALARSAPG 682 >gi|168212741|ref|ZP_02638366.1| excinuclease ABC, C subunit [Clostridium perfringens CPE str. F4969] gi|170715691|gb|EDT27873.1| excinuclease ABC, C subunit [Clostridium perfringens CPE str. F4969] Length = 620 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 195/619 (31%), Positives = 316/619 (51%), Gaps = 20/619 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 + +P+ PGVY M + G V+YVGKA L+ R++ Y S NH+ ++ M+ I + Sbjct: 7 QLKILPDKPGVYIMKNSLGEVIYVGKAKVLKNRVRQYFQNSKNHSEKVRAMVKNIAEFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK+ PR+NI L+DDK +P+I IT P +Y R+ + Sbjct: 67 IVTDSEMEALILECNLIKKYSPRYNIALKDDKFYPFIKITTNEDFPRVYVTRNFAKDGNR 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ + AV + + +++ F LR+C ++ TR CL + I C PC G IS Sbjct: 127 YFGPYTNGTAVYEVMGLIKKLFPLRTCKKAIVEGGEPTRACLNYHINLCKAPCAGYISKA 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235 +Y E + E L+G + ++ + M +A + ++E A RDR+ A+ I Sbjct: 187 EYWEMIDEIINILNGTDTSIIKNFKLEMEKAAEELEFEKAAKIRDRILAIELISEKQKMF 246 Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D LY ++ C Q F G+ G F ++ + +++S F+ FY Sbjct: 247 TVKEGDEDFIDLYTDEKDGCAQVFFVREGKVTGREHFMIENIGDDPVEEVISSFIASFYG 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350 P+ I + EE E+ L+E ++ G KV I VPK+G+K+ +++ NA + Sbjct: 307 GTAQIPKTIYVPEEIEDQELIEKFLTEKRGSKVWIKVPKKGDKKNLLDMVRNNAKIMLDQ 366 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + + + ++ L + L +P RIE YD S+I G +VG MVV + Sbjct: 367 FKEKMVEEKELNKSALTELADVLGLDSLPARIEAYDISNIQGVDSVGTMVVFENGKAKNS 426 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVIL 469 YR+F + VK +D MR +L RRFS ++ + + + + F +PD++++ Sbjct: 427 DYRRFKIKS--VKGPNDYESMREILSRRFSHGLEEVNKIKERNLEYSKGKFCIFPDLIMM 484 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ++ A VLK +E I + + K K F E +++ ++ Sbjct: 485 DGGKGQVNIALEVLKDFGIE--IPVCGLVKDHKHRTRGIIF---NNEEILIRRGSGLMNL 539 Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 I R++DE HR+AIT HR R K+ +S L++I IG R+R LL FG++ I ++S E Sbjct: 540 ITRVQDEVHRYAITYHRSLRDKRTLHSILEDIPRIGEKRRRNLLMKFGSIDNIKKASMEE 599 Query: 589 LASIEGISKKIACKIYNHF 607 L GI K+ A I +F Sbjct: 600 LLDTPGIDKRAAESIKQYF 618 >gi|307266005|ref|ZP_07547552.1| excinuclease ABC, C subunit [Thermoanaerobacter wiegelii Rt8.B1] gi|306918967|gb|EFN49194.1| excinuclease ABC, C subunit [Thermoanaerobacter wiegelii Rt8.B1] Length = 615 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 198/618 (32%), Positives = 328/618 (53%), Gaps = 18/618 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 + +PE PGVY M D +G+++YVGKA L+ R++ Y N ++ M+S + + + Sbjct: 6 KLKLLPEKPGVYIMKDKSGKIIYVGKAVVLKNRVRQYFQNKENQLPKVKVMLSHVEDFEY 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT TE+EAL+LE N+IK+ KP++N+LL+DDK++PYI T + P + R Sbjct: 66 IVTDTELEALMLECNLIKKYKPKYNVLLKDDKNYPYIKATVNEEYPRIMFTRRIEPDGAK 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP++S AV +TI +++ F +R+C ++ + + R CL + I CS PCT +I+ E Sbjct: 126 YFGPYSSAFAVRETIKLVRKMFPIRTCNRNIEKDMGKVRECLYYHIGLCSAPCTNKINKE 185 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y + V +A FL G L +K+ +M +A + +E A RD++ A+ + Sbjct: 186 DYRKLVDQAVLFLDGKRDWLIQKLKEDMQKAAEELRFEEAARIRDQIFAIERTSEKQKVV 245 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D S+ +++CIQ F G+ G +++K +I+S F++QFY Sbjct: 246 SVGEDEQDIISMARGADISCIQVFFVRDGKLSGREHYYMKNTEGMERGEIISSFIKQFYE 305 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--H 352 P P+ I++ E +E LL ++ G KV IT+P +G+K+++++ NA + Sbjct: 306 GAPYIPKEIIIDVELDERELLSEWLSQKRGNKVFITIPMRGKKKELVDMVYQNALEALKS 365 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + +IS + + + L + RIE YD S+ G VG MVV + K+QY Sbjct: 366 DISIREKISKDQAVLELSNLVGLDYAK-RIEAYDISNTRGQDNVGSMVVFADGKPKKSQY 424 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEY-SFPSWPDVVILDG 471 RKFN+ V+ QDD MR V+ERRF I+ +E + ++ F PD++++DG Sbjct: 425 RKFNIK--YVEGQDDYESMREVIERRFLHAIEEKELIEKGELEENKAKFAEMPDLILIDG 482 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 G G ++A VL L + I + + K K V + + M I Sbjct: 483 GIGHVNAVLQVLDGLGIA--IPVYGMVKDSKHRTRG---LVSPQGEIDIPMTTKAFRLIA 537 Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 ++++EAHRFAIT H+K++ K S L I GIG R + L +F +++ I +S E L Sbjct: 538 QIQEEAHRFAITFHKKKQSKRFKSELFNIPGIGEKRAKALYDAFKSIEEIRSASLEDLKK 597 Query: 592 IEGISKKIACKIYNHFHK 609 ++G+++K A +Y +F K Sbjct: 598 VKGMNEKAAQAVYEYFRK 615 >gi|18309334|ref|NP_561268.1| excinuclease ABC subunit C [Clostridium perfringens str. 13] gi|21363051|sp|Q8XNI1|UVRC_CLOPE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|18144010|dbj|BAB80058.1| excinuclease ABC subunit C [Clostridium perfringens str. 13] Length = 620 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 195/619 (31%), Positives = 316/619 (51%), Gaps = 20/619 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 + +P+ PGVY M + G V+YVGKA L+ R++ Y S NH+ ++ M+ I + Sbjct: 7 QLKILPDKPGVYIMKNSLGEVIYVGKAKVLKNRVRQYFQNSKNHSEKVRAMVKNIAEFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK+ PR+NI L+DDK +P+I IT P +Y R+ + Sbjct: 67 IVTDSEMEALILECNLIKKYSPRYNIALKDDKFYPFIKITTNEDFPRVYVTRNFAKDGNR 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ + AV + + +++ F LR+C ++ TR CL + I C PC G IS Sbjct: 127 YFGPYTNGTAVYEVMGLIKKLFPLRTCKKAIVEGGEPTRACLNYHINLCKAPCAGYISKA 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235 +Y E + E L+G + ++ +K+ M +A + ++E A RDR+ A+ I Sbjct: 187 EYWEMIDEIINILNGTDTSIIKKLKLEMEKAAEELEFEKAAKIRDRILAIELISEKQKMF 246 Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D LY ++ C Q F G+ G F ++ + +++S F+ FY Sbjct: 247 TVKEGDEDFIDLYTDEKDGCAQVFFVREGKVTGREHFMIENIGDDPVKEVISSFIASFYG 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350 P+ I + EE E+ L+E ++ G KV I VPK+G+K+ +++ NA + Sbjct: 307 GTAQIPKTIYVPEEIEDQELIEKFLTEKRGSKVWIKVPKKGDKKNLLDMVRNNAKIMLDQ 366 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + + + ++ L + L +P RIE YD S+I G +VG MVV + Sbjct: 367 FKEKMVEEKELNKSALTELADVLGLDSLPVRIEAYDISNIQGVDSVGTMVVFENGKAKNS 426 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVIL 469 YR+F + VK +D MR +L RRFS ++ + + + F +PD++++ Sbjct: 427 DYRRFKIKS--VKGPNDYESMREILSRRFSHGLEEVNKIKERNLEYSNGKFCIFPDLIMM 484 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ++ A VLK +E I + + K K E +++ ++ Sbjct: 485 DGGKGQVNIALEVLKGFGIE--IPVCGLVKDHKHRTRGIIL---NNEEILIRRGSGLMNL 539 Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 I R++DE HR+AIT HR R K+ +S L++I IG R+R LL FG++ I ++S E Sbjct: 540 ITRVQDEVHRYAITYHRSLRDKRTLHSILEDIPRIGEKRRRNLLMKFGSIDNIKKASMEE 599 Query: 589 LASIEGISKKIACKIYNHF 607 L GI K+ A I +F Sbjct: 600 LLDTPGIDKRAAESIKQYF 618 >gi|256394749|ref|YP_003116313.1| excinuclease ABC, C subunit [Catenulispora acidiphila DSM 44928] gi|256360975|gb|ACU74472.1| excinuclease ABC, C subunit [Catenulispora acidiphila DSM 44928] Length = 663 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 190/633 (30%), Positives = 310/633 (48%), Gaps = 31/633 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 ++P PGVY+ D RV+YVGKA NL+ R+ SY N R M++ ++ + Sbjct: 10 KPGEIPTSPGVYKFRDPHSRVIYVGKAKNLRSRLTSYFQDLANLHVRTQTMVTTAASVEW 69 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TEVEAL LE IK+ +PRFN+ RDDKS+P + +T + P R Sbjct: 70 TTVATEVEALQLEYTWIKQFEPRFNVKYRDDKSYPSLAVTVGEEFPRAQVMRGPKRPGVR 129 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP++ A+ +T++SL R F +R+C+ VF+ RPCLL I +CS PC G +S+ Sbjct: 130 YFGPYSHAWAIRETLDSLLRVFPIRTCSSGVFKRAAQTGRPCLLGYIGKCSAPCVGRVSA 189 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E++ E V + F++G + M +A + ++E A RD L AL N Sbjct: 190 EEHREIVDDFVSFMAGRTDRYIRGLEEEMKEAAKELEFEKAARLRDDLQALKQSLEKNAV 249 Query: 238 IYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D +L + A +Q G+ RG + + + A ++ +F++Q Y Sbjct: 250 VLGDGTDADVIALSEDPLEAAVQVFHVRGGRIRGQRGWVVDRVEDVDTAGLVEHFMQQLY 309 Query: 295 TD---------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQAL 345 + P IL+ E + + G KV++ +PK+G+K ++E Sbjct: 310 GSEQGEPGIDTETVPREILVPELPGSVEAITEWLSARRGAKVEVRIPKRGDKAALMETVA 369 Query: 346 INAHRSHTQKLSTEISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVV 401 NA ++ + S L++ + P RIE YD SH+ G + V MVV Sbjct: 370 QNAKQALALHKTRRASDLTTRSVALQELADAIGMDQAPLRIECYDISHLQGTNVVASMVV 429 Query: 402 VGENGFVKNQYRKFNLHPNDVKT--QDDCAMMRMVLERRFSQLIK--NEENLNFHPKKQE 457 + K++YR+F + +D DD M V+ RRF +K EE L Sbjct: 430 FEDGLPRKSEYRRFTIKGSDENGATNDDVRNMHEVITRRFKAFLKEQEEEKLIDATIGDR 489 Query: 458 YSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA 517 F P +V++DGG+ Q++AA L L + + +T++ +AK + E + + + Sbjct: 490 KKFSYPPQLVVVDGGQPQVAAAARALADLEISD-VTLVGLAKRLE-----EVWLPDEDDP 543 Query: 518 LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFG 576 ++L LY +QR+RDEAHRF I HR++R K+ S LD++ G+G +R++ LL FG Sbjct: 544 VLLPRSSEGLYMLQRVRDEAHRFGIAFHRQKRSKSMVASALDDVPGLGEVRRKALLAHFG 603 Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 T++ + + +A + GI A +I++ + Sbjct: 604 TLRKLRAAQVAEIAEVPGIGPATARQIHSALAE 636 >gi|238752715|ref|ZP_04614185.1| UvrABC system protein C [Yersinia rohdei ATCC 43380] gi|238709046|gb|EEQ01294.1| UvrABC system protein C [Yersinia rohdei ATCC 43380] Length = 588 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 214/606 (35%), Positives = 332/606 (54%), Gaps = 31/606 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D AG V+YVGKA +L+KR+ SY ++ + + ++ I I TVT TE EALLLE Sbjct: 1 MYDKAGTVIYVGKAKDLKKRLTSYFRAHVASRKTETLVKNIAQIDVTVTHTETEALLLEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK +PR+N+LLRDDKS+P I ++ K P L HR + +G YFGPF + AV +T Sbjct: 61 NYIKLYQPRYNVLLRDDKSYPLIFLS-ADKHPRLAIHRGAKHEKGEYFGPFPNSYAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193 + LQ+ F +R C +SV+R+R+RPCL +QI RCSGPC IS E+Y V + FLSG Sbjct: 120 LALLQKLFPVRQCENSVYRNRSRPCLQYQIGRCSGPCVAGLISDEEYQRQVDYVRLFLSG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--DCFSLYHNK 251 + + ++ M +A+ +E A RD++ A+ + + D + + Sbjct: 180 KDQQVLTQLISRMEEASQLLHFEDAARIRDQIQAVRRVTEQQFVSGDSEDLDVIGVAFDA 239 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLSE 307 LAC+ F G+ G+ ++F K + + ++++ F+ QFY + P ILL Sbjct: 240 GLACVHVLFIRQGKVLGSRSYFPKVPAGTELSEVVQTFVGQFYLQGSQGRTLPGEILLDF 299 Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367 EE LL S + G K++I +G++ + ++ A NA + +LS + + +K Sbjct: 300 ILEEKELLASSLSELAGRKIQIQSRPRGDRARYLKLARTNASTALVTRLSQQSTIHQRMK 359 Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427 + K L R+E +D SH MG V VV NG V+++YR++N+ + + DD Sbjct: 360 ELAKILNLD-EINRMECFDISHTMGEQTVASCVVFDANGPVRSEYRRYNI--SGITPGDD 416 Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487 A M VL+RR+ + + +++ PDV+ +DGGKGQLS A V LN Sbjct: 417 YAAMSQVLKRRYGKALDDKK---------------IPDVIFIDGGKGQLSQAFDVFASLN 461 Query: 488 V---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 V + + ++ +AKG R AG+E F+ +GE L P L+ IQ +RD++H AIT Sbjct: 462 VPWDKQKPLLVGVAKGSDRKAGLETLFLAAEGEGFSLPPDSPALHLIQHIRDDSHNHAIT 521 Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR+RR K S L+ I G+GP R+++LL+ G ++ + +S E +A + IS+ +A K Sbjct: 522 GHRQRRSKVKNTSALEMIEGVGPKRRQILLKYMGGLQPLLNASVEEIAKVPSISQALAEK 581 Query: 603 IYNHFH 608 IYN Sbjct: 582 IYNALK 587 >gi|326389756|ref|ZP_08211321.1| excinuclease ABC, C subunit [Thermoanaerobacter ethanolicus JW 200] gi|325994238|gb|EGD52665.1| excinuclease ABC, C subunit [Thermoanaerobacter ethanolicus JW 200] Length = 615 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 200/618 (32%), Positives = 330/618 (53%), Gaps = 18/618 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 + +PE PGVY M D +G+++YVGKA L+ R++ Y N ++ M+S + + + Sbjct: 6 KLKLLPEKPGVYIMKDKSGKIIYVGKAVVLKNRVRQYFQNKENQLPKVKVMLSHVEDFEY 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT TE+EAL+LE N+IK+ KP++NILL+DDK++PYI +T + P + R Sbjct: 66 IVTDTELEALMLECNLIKKYKPKYNILLKDDKNYPYIKVTVNEEYPRIMFTRRIEPDGAK 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP++S AV +TI +++ F +R+C ++ + + R CL + I CS PCT +I+ E Sbjct: 126 YFGPYSSAFAVRETIKLVRKMFPVRTCNRNIEKDIGKVRECLYYHIGLCSAPCTNKINKE 185 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y + V +A FL G L +K+ +M +A + +E A RD++ A+ + Sbjct: 186 DYRKLVDQAVLFLDGKRDWLIQKLKEDMQKAAEELRFEEAARIRDQIFAIERTSEKQKVV 245 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D S+ + +++CIQ F G+ G +++K +I+S F++QFY Sbjct: 246 SVGEDEQDIISMARSVDISCIQVFFVRHGKLSGREHYYMKNTEGMERGEIISSFIKQFYE 305 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--H 352 P P+ I+ E +E LL ++ G KV IT+P +G+K+++++ NA + + Sbjct: 306 GAPYIPKEIITDVELDERELLSEWLSQKRGNKVFITIPVRGKKKELVDMVYQNALEALKN 365 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + EIS + + + L + RIE YD S+ G VG MVV + K+QY Sbjct: 366 DISIREEISKDQAVLELSNLVGLDYAK-RIEAYDISNTRGQDNVGSMVVFVDGKPKKSQY 424 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEY-SFPSWPDVVILDG 471 RKFN+ V+ QDD MR V+ERRF I+ +E + K++ F PD++ +DG Sbjct: 425 RKFNIK--YVEGQDDYESMREVIERRFLHGIQEKELIEKGELKEDKAKFAEMPDLIFVDG 482 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 G G ++A VL + I + + K K V + + M + Sbjct: 483 GIGHVNAVMQVLSGFGI--FIPVYGMVKDSKHRTRG---LVSPQGEIDIPMTTKAFRLVA 537 Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 ++++EAHRFAIT H++++ K S L I GIG R + L +F +++ I R+S E L Sbjct: 538 QIQEEAHRFAITFHKEKQSKRFKSELLNIPGIGEKRAKALYDAFKSIEEIKRASVEDLKK 597 Query: 592 IEGISKKIACKIYNHFHK 609 +EG+++K A +Y +F K Sbjct: 598 VEGMNEKAAQAVYEYFRK 615 >gi|145595626|ref|YP_001159923.1| excinuclease ABC subunit C [Salinispora tropica CNB-440] gi|189038086|sp|A4X9H1|UVRC_SALTO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|145304963|gb|ABP55545.1| Excinuclease ABC subunit C [Salinispora tropica CNB-440] Length = 665 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 192/663 (28%), Positives = 304/663 (45%), Gaps = 61/663 (9%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVT 63 +PE PGVY+ D GRV+YVGKA NL+ R+ SY N R M+ ++ + Sbjct: 13 TIPESPGVYRFRDGTGRVIYVGKARNLRNRLNSYFADPVNLHQRTRQMVFTAESVDWISV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL E IK+ PRFN+ RDDKS+PY+ +T + P L R + YFG Sbjct: 73 ATEVEALQQEFTEIKQYDPRFNVRYRDDKSYPYLAVTVSEEFPRLQVMRGAKRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F R+C+ VF+ RPCLL I +C+ PC G +S+E++ Sbjct: 133 PYSHAWAIRETLDLLLRVFPARTCSSGVFKRAGQVGRPCLLGYIDKCAAPCVGSVSAEEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 V F++G + ++ R M A+ + ++E A RD LAAL ++ Sbjct: 193 RAIVEGFCDFMAGRTDLMVRRLEREMADASAELEFERAARLRDDLAALRRAMEKQTVVFG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294 D + + A +Q G+ RG + ++ E T ++ +F Q Y Sbjct: 253 DGTDADVVAFADDPLEAAVQVFHVRDGRIRGQRGWVVEKTEELTIGDLVHHFCTQVYGGE 312 Query: 295 -TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 + P +L+ E + L G +V + VP++G+KR ++E NA + Sbjct: 313 QGEADVPRELLVPELPADVEALADWLSDHRGSRVTLRVPQRGDKRALLETVARNATDALA 372 Query: 354 QKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 + + L + + L P RIE YD S I G V MVV + K Sbjct: 373 RHKLKRAGDLTTRSKALDEIAETLGLQTAPLRIECYDISQIQGTDVVASMVVFEDGLPRK 432 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEEN--------------------- 448 ++YR+F + DD + M VL RRF++ + Sbjct: 433 SEYRRFIIRG----ATDDLSAMSEVLRRRFARYLDARAETGEAGVESAGDPATPAGPAST 488 Query: 449 ------------LNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIIS 496 L + F P +V++DGG Q++AA L +L V++ + + Sbjct: 489 GPGVPDEPRVGTLVDPTTGRPRKFAYPPQLVVVDGGAPQVAAAAQALAELGVDD-VALCG 547 Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYS 555 +AK + E + +L LY +QR+RDEAHRFAIT HR+RR + S Sbjct: 548 LAKRLE-----EVWLPDDDFPAILPRTSEGLYLLQRVRDEAHRFAITFHRQRRSRRMTES 602 Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT--SH 613 LD + G+G +R++ LL+ FG++K +S +S E + + G+ ++ A I +T Sbjct: 603 ALDRVPGLGEVRRKALLRHFGSLKRLSAASVEEITEVPGVGQRTAEAILAALGDSTQPDE 662 Query: 614 TPT 616 T Sbjct: 663 PRT 665 >gi|256832484|ref|YP_003161211.1| excinuclease ABC, C subunit [Jonesia denitrificans DSM 20603] gi|256686015|gb|ACV08908.1| excinuclease ABC, C subunit [Jonesia denitrificans DSM 20603] Length = 647 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 188/640 (29%), Positives = 300/640 (46%), Gaps = 39/640 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA NL+ R+ +Y S + R M++ + +T+ Sbjct: 13 DIPTAPGVYRFRDDQGRVIYVGKAKNLRARLSNYFQSLSALHPRTQAMVTSAAGVEWTIV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE IK PRFN+ RDDKS+PY+ ++ ++P + R + YFG Sbjct: 73 STEVEALALEYTWIKEYDPRFNVKYRDDKSYPYLAVSMSQQVPRAFVTRSAKKPGDRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180 PF A+ T++ L R F +R+C V+ + RPCLL I +CS PCTG IS + + Sbjct: 133 PFGHAWAIRDTLDQLLRVFPVRTCTQGVYNRAQRSGRPCLLGYIDKCSAPCTGNISQDDH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + + F++G + + M A+ D+E+A RD L AL N + Sbjct: 193 RQLAEDLCDFMAGHTGRFISDVKQRMMDASQALDFETAARLRDDLRALERALEKNAVVLS 252 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294 D F++ ++ A +Q G+ RG + + + + + + L+Q Y Sbjct: 253 DATDADVFAVASDELEAAVQVFHVRGGRIRGQRGWIAEKVEALRDDEFIEHLLQQVYGVH 312 Query: 295 --------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 + P +L+ ++ + G KV + +P++GEK ++ Sbjct: 313 DDSVTPGHAAQAIPRQVLVPVLPADSETMTAWLSTLRGSKVAVRIPQRGEKAQLAATVHA 372 Query: 347 NAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVV 402 NA ++ S + L++ L P RIE YD SH G MVV Sbjct: 373 NAEQALRLHKSRRAGDLTTRSQALRELHDALELSEAPLRIECYDVSHNQGTFQTASMVVF 432 Query: 403 GENGFVKNQYRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKNEENLNF---------H 452 + K+ YR F++ N+ +DD M V+ RRF + + ++E Sbjct: 433 EDGLPKKSAYRLFHIKGNEGDGARDDTEAMYEVISRRFKRHLIHKETRQTVTTGEVDAHD 492 Query: 453 PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV 512 + F P +V++DGG Q++AA L L + + + + +AK + E + Sbjct: 493 NSSESPVFAYEPSLVVVDGGAPQVAAAVRALTDLGITD-VAVCGLAKRLE-----EIWIP 546 Query: 513 KKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLL 571 ++L + LY +Q LRDEAHRFAI HRKRR + S LD I G+GP R + L Sbjct: 547 HDEFPVILERQSAGLYLLQHLRDEAHRFAIKAHRKRRSQGMTVSQLDGIPGLGPTRVKAL 606 Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 L FG+VK I +S + +A+++GI + A ++ H Sbjct: 607 LNHFGSVKKIKEASVDDIAAVKGIGRTTATQVVEFLHPRA 646 >gi|218438532|ref|YP_002376861.1| excinuclease ABC subunit C [Cyanothece sp. PCC 7424] gi|218171260|gb|ACK69993.1| excinuclease ABC, C subunit [Cyanothece sp. PCC 7424] Length = 638 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 197/630 (31%), Positives = 315/630 (50%), Gaps = 30/630 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFT 61 +++P PGVY M D G +LY+GK+ L+ R++SY +++ + R+ M+ Q+ +I F Sbjct: 15 LKEIPPEPGVYFMRDKNGDILYIGKSKKLRSRVRSYFRNSHVLSPRLALMVQQVADIEFI 74 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQG 119 VT TE EAL LEAN+IK+ +P FN+LL+DDK +PY+ IT P ++ R + Sbjct: 75 VTDTEAEALALEANLIKQHQPYFNVLLKDDKKYPYVCITWSEDYPRIFITRKRRLDNEKD 134 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 Y+GP+ + T+ ++R F LR +F + RPCL + I RC G C IS Sbjct: 135 RYYGPYVDTRLLRSTLQMIKRIFPLRQRPKPLF--KDRPCLNYDIGRCPGVCQLLISPAD 192 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + + + G L ++ M QA + ++E A RD++ AL + + Sbjct: 193 YHKTIQQVAMIFQGRTGELINTLSSQMEQAANQLNFEKAATIRDQIKALESLTSDQKVAL 252 Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSES------TNAQILSYF 289 D +L + + CIQ G+ G FF+ ++ IL Sbjct: 253 PDDTISRDAIALATDGHHCCIQLFQIRAGRLVGRLGFFVDIQNQENNITQTDPGAILQRV 312 Query: 290 LRQFYTDKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 L + Y P ILL + L ++ G KV + VP++ K ++IE Sbjct: 313 LEEHYWMADPVEIPSEILLQYPLSDEGTLGDWLSERKGRKVNLIVPQRQSKAELIEMVER 372 Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 NA + + ++D L +PKRIE YD SHI G +AV VV + Sbjct: 373 NAKYELERTQRFADRNLAAMEDLAAIVDLEELPKRIEGYDISHIQGSNAVASQVVFIDGV 432 Query: 407 FVKNQYRKFNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHP----KKQEYSF 460 K YR + + +VK DD A + V+ RRF + +N P + S Sbjct: 433 PAKQHYRHYKIKNPEVKIGHSDDFASLAEVIRRRFRKYNRNSLTSLPTPLLQGEGSLSSE 492 Query: 461 PSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVL 520 PD++++DGGKGQLSA VL+++N+ + + ++S+AK + E F + E L Sbjct: 493 SDLPDLIMIDGGKGQLSAVVEVLQEMNLLSELRVVSLAKQRE-----EIFLPGESEPLAT 547 Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVK 579 + P + ++R+RDEAHRFA++ HR++R K + S LDEI G+G R++ LL F +V Sbjct: 548 DAEQPGVQLLRRVRDEAHRFAVSFHRQQRMKNSRRSRLDEIPGLGFGRQKQLLAHFHSVD 607 Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHK 609 I +++ + L + GI +++A +IYN+FH Sbjct: 608 YIRQATIDQLMEVSGIGEQLAQEIYNYFHP 637 >gi|311742584|ref|ZP_07716393.1| excision endonuclease subunit UvrC [Aeromicrobium marinum DSM 15272] gi|311314212|gb|EFQ84120.1| excision endonuclease subunit UvrC [Aeromicrobium marinum DSM 15272] Length = 648 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 186/622 (29%), Positives = 305/622 (49%), Gaps = 32/622 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 ++P PGVY+ D GRV+YVGKA +L+ R+ SY R M++ ++ +TV Sbjct: 13 EIPTEPGVYRFRDEGGRVIYVGKAKSLRPRLSSYFADLAGLHERTRRMVTTAASVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE IK PRFN+ RDDKS+P++ +T + P + R + YFG Sbjct: 73 GTEVEALQLEYTWIKEFDPRFNVKYRDDKSYPWLAVTVGEEHPRVQVMRGTQRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ T+++L R F +RSC+ VFR RPCLL I +C+ PC G +S++++ Sbjct: 133 PYSHAWAIRDTVDTLLRVFPMRSCSAGVFRRAAAIGRPCLLGDIGKCAAPCVGRVSADEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 V + F++G +I R M +A+ +YE A RD L AL + + Sbjct: 193 RAIVDDFMAFMAGQTAGFTARIERRMVEASEAMEYELAAKLRDDLGALEKVLEKQTVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D + +Q G+ RG + + T A ++ + Y D Sbjct: 253 DGTDADVLGFEDDPLETAVQIFSVRGGRIRGQRGWVADKAEDVTFADLVERAVMTLYQDA 312 Query: 298 PC---PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P +L+ E + L ++ G V++ VP++G+KR+++E NA ++ + Sbjct: 313 DPGAVPREVLVPELPADHEALAQLLGERRGGPVRLRVPQRGDKRQLMETVEQNAKQALMR 372 Query: 355 KLSTE----ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + + L++ LP P RIE +D S++ G V MVV + K+ Sbjct: 373 HRLKRSSDLTTRSLALEEIQAALDLPDAPLRIECFDISNLQGTEIVASMVVFEDGLPKKS 432 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLN--------FHPKKQEYSFPS 462 +YR+F + Q D A M V+ RRF +L+ L + F Sbjct: 433 EYRRFVVRHE---GQSDVAAMHEVVRRRFERLVAARAGLEEGETEGGIDPETGRPRRFAY 489 Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522 P +V++DGG Q+ AA+ + ++ + + + + +AK + E + + ++L Sbjct: 490 TPSLVVVDGGPPQVEAARRAMAEVGITD-VALCGLAKRLE-----EVWLPRDEHPVILPR 543 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMI 581 LY +QR+RDEAHRFAIT HR RR K+ S LD++ G+GP R++ L++ FG++K + Sbjct: 544 TSEGLYLLQRVRDEAHRFAITHHRGRRSKSMVDSVLDDVAGLGPTRRKALMRQFGSLKRL 603 Query: 582 SRSSPETLASIEGISKKIACKI 603 ++ E +A + GI A I Sbjct: 604 RAATVEEVAQVPGIGPATAQSI 625 >gi|260768672|ref|ZP_05877606.1| excinuclease ABC subunit C [Vibrio furnissii CIP 102972] gi|260616702|gb|EEX41887.1| excinuclease ABC subunit C [Vibrio furnissii CIP 102972] gi|315180373|gb|ADT87287.1| excinuclease ABC subunit C [Vibrio furnissii NCTC 11218] Length = 609 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 199/619 (32%), Positives = 326/619 (52%), Gaps = 31/619 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M + V+YVGKA +L+KR+ SY + + +++ I I T+ Sbjct: 10 LKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLSSYFRKKIDSEKTRALVTHIEKIDVTI 69 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EAL+LE N IK+ P++N+LLRDDKS+PYI I+ H+ P L HR + +G YF Sbjct: 70 THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFIS-GHRHPRLSMHRGAKKRKGEYF 128 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYM 181 GP+ AV +T++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC IS ++Y Sbjct: 129 GPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVSSIISDDEYA 188 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 E V+ + FL G + + E + M +A++ +E A RD++ A+ +Q + Sbjct: 189 ELVNYVRLFLQGKDKQVLEILIDKMEKASMGLRFEDAAKFRDQIHAIRRVQEQQFVSEDS 248 Query: 242 MDCF---SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 MD K +ACI G+ G+ + F K ++ ++ FL Q+Y Sbjct: 249 MDDMDVLGFAQEKGIACIHILMIRQGKVLGSRSHFPKIPHNTSQEEVFESFLSQYYLSHN 308 Query: 299 ----CPENILLSE-EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 P ILL++ + ++ + + G KV V G + + ++ + NA + T Sbjct: 309 EARTMPSRILLNDGLLVDAKPMQDALTQLAGRKVTFHVNPTGTRGRYLKLSNTNALTAIT 368 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 K++ +++ K + + +I R+E +D SH MG S + VV + G +K +YR Sbjct: 369 TKINHKMTINQRFKALQDELGIDNIT-RMECFDISHTMGESTIASCVVFNQEGPLKQEYR 427 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ + DD A M VLERR+ + + ++ PD++ +DGGK Sbjct: 428 RYNI--TGITGGDDYAAMGQVLERRYGKQLDVDK---------------IPDIIFIDGGK 470 Query: 474 GQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GQL+ A ++ + + R +I IAKG R G+E G+ L P L+ IQ Sbjct: 471 GQLNRAHEIMTQCWQDWPKRPRLIGIAKGVTRKPGLETLITTDGDEFHLPSDAPALHLIQ 530 Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AI HR +R K S L+ I G+GP R++ LL+ G ++ + R++ E +A Sbjct: 531 HIRDESHNHAIAGHRAKRGKTRRTSALEGIEGVGPKRRQALLKYMGGLQELKRATVEEIA 590 Query: 591 SIEGISKKIACKIYNHFHK 609 + GIS +A IY + Sbjct: 591 KVPGISHSLAEIIYQTLKQ 609 >gi|239827946|ref|YP_002950570.1| excinuclease ABC subunit C [Geobacillus sp. WCH70] gi|239808239|gb|ACS25304.1| excinuclease ABC, C subunit [Geobacillus sp. WCH70] Length = 591 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 185/613 (30%), Positives = 298/613 (48%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG Y M D G V+YVGKA L+ R++SY H + ++++I + + VT + Sbjct: 13 LPEQPGCYLMKDKNGTVIYVGKAKVLKNRVRSYFTGT-HDGKTLRLVNEIADFEYIVTSS 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +VEAL+LE N+IK+ P++N++L+DDKS+P+I IT K P L R G YFGP+ Sbjct: 72 DVEALILEMNLIKKYDPKYNVMLKDDKSYPFIKIT-AEKHPRLVITRKVKKDGGKYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 V A +T L R + LR C+ R CL + + +C PC +S ++ E V Sbjct: 131 PHVQAANETKKLLDRIYPLRKCSTMP----NRVCLYYHMGQCLAPCVYPVSEQQNKEIVE 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 + +FLSGG +K+++A M +A ++E A +RD++A + I N Sbjct: 187 QIARFLSGGYKEVKKELAEKMMKAAEALEFERAKEYRDQIAYIEATMEKQKMIINDFVDR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F ++K C+Q F G+ + + + P+ Sbjct: 247 DVFGYAYDKGWMCVQVFFIRQGKLIERDVSIFPMYQDPDEELLTFLGQFYTKANHFKPKE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 ++L + + + +V I PK+G+K+++++ A NA Sbjct: 307 VILPADIDGE-------LAEQLLEVTIVQPKRGKKKELVDLASKNAAIALKEKFYLIERD 359 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ K +P RIE +DNS+I G V MVV + K +YRK+ + Sbjct: 360 EERTIKAVENLGKILGIPTP-HRIEAFDNSNIHGADPVSAMVVFIDGKPEKKEYRKYKIK 418 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++ +K PD++I+DGGKG L+A Sbjct: 419 T--VEGPDDYESMREVVRRRYTRALKEG--------------LPLPDLIIIDGGKGHLAA 462 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ VL+ +L ++ I + +AK K E + + L Y +QR++DE Sbjct: 463 ARDVLENELGLD--IPLAGLAKDDKHRTS-ELIMGDPPQVVPLERNSQEFYLLQRIQDEV 519 Query: 538 HRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R K S LD+I G+G RK+ LL+ FG++K + ++ E L I Sbjct: 520 HRFAITFHRQARGKTMFRSVLDDIPGVGEKRKKALLKHFGSIKNMKEATVEELQKA-NIP 578 Query: 597 KKIACKIYNHFHK 609 + +A KIY + Sbjct: 579 RSVAEKIYKKLRE 591 >gi|294503976|ref|YP_003568038.1| excinuclease ABC subunit C [Yersinia pestis Z176003] gi|262361839|gb|ACY58560.1| excinuclease ABC subunit C [Yersinia pestis D106004] gi|294354435|gb|ADE64776.1| excinuclease ABC subunit C [Yersinia pestis Z176003] Length = 588 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 211/606 (34%), Positives = 330/606 (54%), Gaps = 31/606 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D AG V+YVGKA +L+KR+ SY + + ++ I I TVT TE EALLLE Sbjct: 1 MYDTAGTVIYVGKAKDLKKRLTSYFRAQVANRKTETLVKNIAQIDVTVTHTETEALLLEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK +PR+N+LLRDDKS+P I ++ P L HR + +G YFGPF + AV +T Sbjct: 61 NYIKLYQPRYNVLLRDDKSYPLIFLSADE-HPRLAVHRGAKHEKGEYFGPFPNSYAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193 + LQ+ F +R C +SV+R+R+RPCL +QI RCSGPC +S E+Y V + FLSG Sbjct: 120 LALLQKLFPVRQCENSVYRNRSRPCLQYQIGRCSGPCVEGLVSEEEYQRQVDYVRLFLSG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--DCFSLYHNK 251 + + ++ M +A+ + +E A RD++ A+ + + D + + Sbjct: 180 KDQQVLTQLITRMEEASQQLHFEDAARIRDQIQAVRRVTEQQFVSGDSEDLDVIGVAFDA 239 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLSE 307 LAC+ F G+ G+ ++F K + + ++++ F+ QFY + P ILL Sbjct: 240 GLACVHVLFIRLGKVLGSRSYFPKVPAGTELSEVVQTFVGQFYLQGSQGRTLPGEILLDF 299 Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367 E LL S + G K++I +G++ + ++ A NA + +LS + + +K Sbjct: 300 TLTEKDLLASSLSELAGRKIQIQSRPRGDRARYLKLARTNASTALITRLSQQSTIHQRMK 359 Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427 + K L R+E +D SH MG V VV NG V+++YR++N+ + + DD Sbjct: 360 ELAKVLKLD-EINRMECFDISHTMGEQTVASCVVFDANGPVRSEYRRYNI--SGITPGDD 416 Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487 A M VL+RR+ + + +++ PDV+ +DGGKGQLS A V LN Sbjct: 417 YAAMAQVLKRRYGKALDDQK---------------IPDVIFIDGGKGQLSQAFDVFASLN 461 Query: 488 V---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 V + + ++ +AKG R AG+E F+ +GE L P L+ IQ +RD++H AIT Sbjct: 462 VPWDKQKPLLVGVAKGSDRKAGLETLFLASEGEGFSLPPDSPALHLIQHIRDDSHNHAIT 521 Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR+RR K S L+ I G+GP R+++LL+ G ++ + +S E +A + GIS+ +A K Sbjct: 522 GHRQRRSKVKNTSALEMIEGVGPKRRQVLLKYMGGLQPLFNASVEEIAKVPGISQALAEK 581 Query: 603 IYNHFH 608 I+N Sbjct: 582 IHNALK 587 >gi|300934510|ref|ZP_07149766.1| excinuclease ABC subunit C [Corynebacterium resistens DSM 45100] Length = 686 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 181/681 (26%), Positives = 317/681 (46%), Gaps = 82/681 (12%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P+ PGVY D RV+YVGKA +L+ R+ +Y + R M+ N +++TV Sbjct: 12 TIPDKPGVYTFRDATDRVIYVGKAKSLRSRLSNYFQDLSQLHPRTRAMVQTANRVQWTVV 71 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E+EAL LE IKR PRFN++ RDDK++P + I+ K +IP + +R YFG Sbjct: 72 SSELEALNLEYTWIKRFNPRFNVMYRDDKTYPMLAISVKEQIPRAFLYRGPRRKGVRYFG 131 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P+ A+ +T+ SL R F +R+C V++ RPCLL I RCS PC G I+ + Sbjct: 132 PYPKAWAIRETLESLTRVFPIRTCTTGVYKRHAALDRPCLLGYIDRCSAPCVGNITPGAH 191 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 E V++ FL+G ++ ++ R M A+ D+E A RD+L A++ + ++ Sbjct: 192 RELVNQFSSFLAGNTDHVMRQVRREMEAASEALDFERAASLRDQLQAMNKVVERQAVVFS 251 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D + ++ + +Q G+ G + ++ S + + + + + + Sbjct: 252 DTTDADLITFVSDELESAVQIFHVRGGRIHGQRGWVVERGDNSDESLLGEFITQFYGEEA 311 Query: 298 --------------------------------------------PCPENILLSEEAEETS 313 P P+ +L+ E+ Sbjct: 312 ELARATETAVGGSAASEVDLELAKAINPAAVTELGDLVGDVQVTPVPKEVLVHTMPEDID 371 Query: 314 LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE----ISHQMILKDF 369 L + G +V I VP++G+K++++E A NA ++ Q + L++ Sbjct: 372 ELSAWLSELRGSQVTIRVPQRGDKKQLLETANQNAKQALAQHKLKRSGDLTTRSAALQEL 431 Query: 370 TKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDC 428 + + P RIE D SHI G V +VV + K+ YR++ + + DD Sbjct: 432 QEALFMDTSPLRIECVDISHIQGTDVVASLVVFEDGMPKKSDYRRYKIKEAAGDGRSDDV 491 Query: 429 AMMRMVLERRFSQLIKNEENLN-------------------FHPKKQEYSFPSWPDVVIL 469 + V+ RRF + ++++ L + + F P + ++ Sbjct: 492 GSIAEVVRRRFRRHLEDKTALPMGDEGGELLEGEELLAARAEDGEASKKKFAYPPQLFVV 551 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGG+ Q++AAQ VL +L + + +T++ IAK + E + +++ LY Sbjct: 552 DGGQPQVNAAQEVLDELGITD-VTVVGIAKRLE-----ELWVPGDDYPVIIPRGSDALYL 605 Query: 530 IQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 +Q LRDEAHRFAIT HR++R + S LD++ G+GP R+ L+++FG+V + ++ E Sbjct: 606 VQYLRDEAHRFAITFHRQQRSARMRRSVLDDVPGLGPKRRAQLVKAFGSVAKVKAATVEE 665 Query: 589 LASIEGISKKIACKIYNHFHK 609 +A + G ++A I+ K Sbjct: 666 IAKLPGFGPQLATAIHEALQK 686 >gi|291523952|emb|CBK89539.1| excinuclease ABC, C subunit [Eubacterium rectale DSM 17629] Length = 624 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 191/620 (30%), Positives = 320/620 (51%), Gaps = 21/620 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRF 60 +++P+ PGVY M D ++Y+GKA +L KR+ Y ++++ + M+ I++ + Sbjct: 10 ELKKLPDAPGVYIMHDKDDVIIYIGKAKSLTKRVHQYFQASHNEGIKKKQMVEHIDHFEY 69 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK P++N +LRDDK++PYI +T P + R + Sbjct: 70 IVTDSELEALVLECNLIKEHTPKYNTMLRDDKTYPYIKVTLGEDYPRVLFSRQMKKDKSR 129 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV+ +I+ + + + LR+C + R RPCL + I +CS PC G ++ E Sbjct: 130 YFGPYTSASAVKSSIDLINKIYKLRTCNRRLPRDIGADRPCLNYHIHQCSAPCQGYVTKE 189 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y V A FL+G + ++ M +A+ ++E A +RD + ++ + Sbjct: 190 EYAIAVKGAIDFLNGDYEQTIKALSDKMLKASESMEFEKAAEYRDLINSVKQVAQKQKIT 249 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D +L ++ A +Q F G+ G F ++ SE +L+ F++QFY+ Sbjct: 250 NADGEDKDIIALANDDTDAVVQVFFIRNGKLIGRDHFHVRVGSEEAADDVLNNFVKQFYS 309 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HR 350 P P ++L E E+ ++LE ++ G +V I VP++G K K++E A NA + Sbjct: 310 GTPFIPREVMLQSEIEDMAVLEQWLSEKRGRRVNIKVPQKGMKEKLVELAYKNALLVLSQ 369 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E +K+ L H R+E YD S+I G VG M+V + K+ Sbjct: 370 DKERIKREEGRTIGAVKEIEGLLGL-HGLNRMEAYDISNINGFETVGSMIVYEKGKPKKS 428 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE-YSFPSWPDVVIL 469 YRKF L V DD A M VL RRF+ ++ ++ L QE SF +PD++++ Sbjct: 429 DYRKFKLRT--VTGPDDYASMHEVLTRRFTHGMEEQKQLEKDGSPQEIGSFNRFPDIIMM 486 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGG+GQ++ VL +L ++ I + + K + ++ Sbjct: 487 DGGRGQVNICLQVLSELGLD--IPVCGMVKDDFHRTRG---LYYNNVEIPIDRHGEGFKL 541 Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 I R++DEAHRFAI HR R K+ +S LD+I GIGP R++ L++ + +++ I + E Sbjct: 542 ITRIQDEAHRFAIEFHRSLRSKSQIHSVLDDIEGIGPARRKALMRRYQSLEKIKEADVED 601 Query: 589 LASIEGISKKIACKIYNHFH 608 L E +++K A +Y FH Sbjct: 602 LMQTETMNEKAAQAVYAFFH 621 >gi|229493469|ref|ZP_04387254.1| excinuclease ABC subunit C [Rhodococcus erythropolis SK121] gi|229319430|gb|EEN85266.1| excinuclease ABC subunit C [Rhodococcus erythropolis SK121] Length = 730 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 185/659 (28%), Positives = 304/659 (46%), Gaps = 62/659 (9%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA +L+ R+ SY R M++ ++ +TV Sbjct: 13 TIPAAPGVYKFRDPHGRVIYVGKAKSLRSRLNSYFADVTTLHPRTRQMVTTAGSVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE N IK PRFN+ RDDK++P + +T + P L+ +R YFG Sbjct: 73 STEVEALQLEYNWIKEFDPRFNVRYRDDKTYPVLAVTLNEEFPRLFVYRGPRRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F R+C+ VF+ RPCLL I +CS PC G +S+E++ Sbjct: 133 PYSHAWAIRETLDLLLRVFPARTCSSGVFKRHNQIGRPCLLGYIDKCSAPCVGRVSAEEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + V + FL+G L + + + M QA+ D+E+A RD + AL + Sbjct: 193 RQIVEDFCDFLAGRTDKLVKDLEKRMQQASEDLDFETAARLRDDIGALRKALEKQAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT----------DSESTNAQILS 287 D + + A +Q G+ RG + ++ D+ES ++ Sbjct: 253 DGTDADLVAFATDDLEAAVQVFHVRGGRVRGQRGWVVEKAGDAIDWAALDAESDLPILVE 312 Query: 288 YFLRQFYTDK--------------PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPK 333 FL QFY ++ P+ +L+ + ++ K G +V++ VP+ Sbjct: 313 QFLTQFYGEQAALDPGAGSEAGISAVPKEVLVPVLPANATEIQAWLSKLRGSQVQLRVPQ 372 Query: 334 QGEKRKIIEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSH 389 +G+K+ + E NA + Q S L+ + L P RIE D SH Sbjct: 373 RGDKKDLAETVQRNAKEALAQHKLKRAGDFTSRSAALQGIQEALDLDSAPLRIECIDISH 432 Query: 390 IMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKN--- 445 + G V +VV + K+ YR + + DD A + + RRF + ++ Sbjct: 433 VQGTDVVASLVVFEDGLPRKSDYRHYAIKEAAGDGHSDDVASIAEITRRRFLRHNRDLGV 492 Query: 446 ----------------EENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE 489 E + F P++ ++DGG Q++AA VL +L V Sbjct: 493 LAASASTMDSDGGDLAPEAAIDPATGRPRRFAYPPNLFVVDGGAPQVTAAAAVLDELGVT 552 Query: 490 NRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR 549 + + ++ +AK + E + + + ++L LY +QR+RDEAHRFAIT HR +R Sbjct: 553 D-VAVVGLAKRLE-----EVWVPGEEDPVILPRTSESLYLLQRIRDEAHRFAITFHRSKR 606 Query: 550 K-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + S LD + G+G R+ L+ FG+V + ++ E + + GI + A + Sbjct: 607 SRRMTASALDSVKGLGETRRTALVAHFGSVAKLKTATVEEIMQVPGIGETTATAVLAAL 665 >gi|226306512|ref|YP_002766472.1| UvrABC system protein C [Rhodococcus erythropolis PR4] gi|259710345|sp|C0ZZE8|UVRC_RHOE4 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|226185629|dbj|BAH33733.1| UvrABC system protein C [Rhodococcus erythropolis PR4] Length = 730 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 185/659 (28%), Positives = 304/659 (46%), Gaps = 62/659 (9%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA +L+ R+ SY R M++ ++ +TV Sbjct: 13 TIPAAPGVYKFRDPHGRVIYVGKAKSLRSRLNSYFADVTTLHPRTRQMVTTAGSVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE N IK PRFN+ RDDK++P + +T + P L+ +R YFG Sbjct: 73 STEVEALQLEYNWIKEFDPRFNVRYRDDKTYPVLAVTLNEEFPRLFVYRGPRRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F R+C+ VF+ RPCLL I +CS PC G +S+E++ Sbjct: 133 PYSHAWAIRETLDLLLRVFPARTCSSGVFKRHNQIGRPCLLGYIDKCSAPCVGRVSAEEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + V + FL+G L + + + M QA+ D+E+A RD + AL + Sbjct: 193 RQIVEDFCDFLAGRTDKLVKDLEKRMQQASEDLDFETAARLRDDIGALRKALEKQAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT----------DSESTNAQILS 287 D + + A +Q G+ RG + ++ D+ES ++ Sbjct: 253 DGTDADLVAFATDDLEAAVQVFHVRGGRVRGQRGWVVEKAGDAIDWAALDAESDLPILVE 312 Query: 288 YFLRQFYTDK--------------PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPK 333 FL QFY ++ P+ +L+ + ++ K G +V++ VP+ Sbjct: 313 QFLTQFYGEQAALDPGAGSEAGISAVPKEVLVPVLPANATEIQAWLSKLRGSQVQLRVPQ 372 Query: 334 QGEKRKIIEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSH 389 +G+K+ + E NA + Q S L+ + L P RIE D SH Sbjct: 373 RGDKKDLAETVQRNAKEALAQHKLKRAGDFTSRSAALQGIQEALDLDSAPLRIECIDISH 432 Query: 390 IMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKN--- 445 + G V +VV + K+ YR + + DD A + + RRF + ++ Sbjct: 433 VQGTDVVASLVVFEDGLPRKSDYRHYAIKEAAGDGHSDDVASIAEITRRRFIRHNRDLGI 492 Query: 446 ----------------EENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE 489 E + F P++ ++DGG Q++AA VL +L V Sbjct: 493 LAASASTMDADGGDLAPEAAIDPATGRPRRFAYPPNLFVVDGGAPQVTAAAAVLDELGVT 552 Query: 490 NRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR 549 + + ++ +AK + E + + + ++L LY +QR+RDEAHRFAIT HR +R Sbjct: 553 D-VAVVGLAKRLE-----EVWVPGEEDPVILPRTSESLYLLQRIRDEAHRFAITFHRSKR 606 Query: 550 K-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + S LD + G+G R+ L+ FG+V + ++ E + + GI + A + Sbjct: 607 SRRMTASALDSVKGLGETRRTALVAHFGSVAKLKTATVEEIMQVPGIGETTATAVLAAL 665 >gi|119961068|ref|YP_947827.1| excinuclease ABC subunit C [Arthrobacter aurescens TC1] gi|189038020|sp|A1R6G5|UVRC_ARTAT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|119947927|gb|ABM06838.1| excinuclease ABC, C subunit [Arthrobacter aurescens TC1] Length = 671 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 185/648 (28%), Positives = 315/648 (48%), Gaps = 51/648 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + ++P PGVY+ D GRV+YVGKA NL+ R+ SY + + M+ +++ + Sbjct: 10 QTGEIPTTPGVYRFRDPHGRVIYVGKAKNLRSRLNSYFANPAGLLPKTHAMVHAASSVEW 69 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV +E+E+L LE IK KPRFN++ RDDK++PY+ +T K P + R Sbjct: 70 TVVGSELESLQLEYTWIKEFKPRFNVVFRDDKTYPYLAVTMGEKYPRVQVMRGERRKGTR 129 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISS 177 YFGP+ A+ +T+++L R F +RSC+ VF+ RPCLL I +CS PC G ++ Sbjct: 130 YFGPYT-AGAIRETMDTLLRVFPVRSCSAGVFKRAESSGRPCLLGYIDKCSAPCVGRVTP 188 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 +++ + F+ G ++ ++M A + DYE A RD + AL + N Sbjct: 189 DEHRGLAEDFCSFMGGEAKRFISRLEKDMAAAVAELDYERAAGLRDDIIALRKVFERNAV 248 Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D F+L+ ++ A +Q G+ RG + ++ ++T +++ + L+Q Y Sbjct: 249 VLAEDTDADVFALHEDELEASVQVFHVRGGRVRGQRGWVVEKVEDATTPELIEHLLQQVY 308 Query: 295 TDKP-----CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH 349 + P +L+ E + L G +V I VP++G+K ++ NA Sbjct: 309 GEDSEVQGRIPREVLVPENPSNHAELMEWLGGLRGARVDIRVPQRGDKAALMSTVRENAE 368 Query: 350 RSHTQKLSTEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405 ++ + + L++ + +P RIE +D SH+ G + V MVVV + Sbjct: 369 QALKLHKTRRAGDITVRSLALQELQEALEIPVPLLRIECFDISHVQGTNVVASMVVVEDG 428 Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE------------------ 447 K+ YRKF++ A M VL RRF + ++ Sbjct: 429 LPKKSDYRKFSITGAAATDDT--AAMHDVLTRRFRHYLTDKAAQVPIVSGEIVNPTRAGA 486 Query: 448 -------NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500 + + F P++V++DGG+ Q++AA L +L +++ + ++ +AK Sbjct: 487 KSGTELPPSDLDVPAPKAKFAYPPNLVVVDGGQPQVNAAARALAELGIDD-VYVVGLAKR 545 Query: 501 PKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDE 559 + E + ++L LY +QR+RDEAHRFAIT HR++R KA S LD Sbjct: 546 LE-----EVWLPDSDFPVILPRTSQGLYLLQRIRDEAHRFAITFHRQKRGKAMTVSVLDG 600 Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + G+G +++ L+ FG++K I +S E L S +GI +A + H Sbjct: 601 VPGLGEAKRKALVAHFGSLKKIKAASVEELTSAKGIGPALAAAVVQHL 648 >gi|269925891|ref|YP_003322514.1| excinuclease ABC, C subunit [Thermobaculum terrenum ATCC BAA-798] gi|269789551|gb|ACZ41692.1| excinuclease ABC, C subunit [Thermobaculum terrenum ATCC BAA-798] Length = 613 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 197/616 (31%), Positives = 319/616 (51%), Gaps = 27/616 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +PE PGVY M D G+V+YVGKA L+ R++SY S + +I M+ QI++I + V Sbjct: 14 LQAIPEKPGVYLMKDKHGKVIYVGKAKVLRNRVRSYFSSKHLPEKIREMVPQIHDIDYIV 73 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL LE +IK P++N + +DDK PYI +T + + P + K R Y+ Sbjct: 74 TDSEHEALTLEVTLIKHHMPKYNSMFKDDKRLPYIKVTVQEEFPRVLKCRQIINDGSKYY 133 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEKYM 181 GP+ ++ + + I + + F L + + +RPCL + + RC G C G ++Y Sbjct: 134 GPYTALGSAAEAIKLIHQHFMLCHKENEPIDGKQSRPCLPYYLHRCLGACAGRADPQEYR 193 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + FL G + L EK+ R M +A ++E A ++R+++ A+ I+ + Sbjct: 194 AATEQVILFLEGKHDELTEKLRRKMEEAAENLEFEKAALYRNQIKAIEDIRQRQKVVLPT 253 Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-K 297 MD S+ + A I+ F G+ G ++ + + QI+ L QFY Sbjct: 254 NEDMDIISIALDGGEAGIERLFIRDGRLVGHDHSVVELIEDQSPGQIIQIALEQFYIGTY 313 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR----SHT 353 P I+L +E L++ + + + ++ + VP +GEK +++ A NA Sbjct: 314 NIPGRIVLQYPPDEIELIQSALQEYHKREIILEVPTEGEKLELVNMAAQNAKEGLERKRF 373 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + LS E + + K+ LP P RIE YD S++ G AVG MVV + +NQYR Sbjct: 374 KWLSEEQKRTGAMLELQKELQLPIKPSRIECYDISNVQGADAVGSMVVFEDGAPARNQYR 433 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 +F + V+ +D MMR VL RRF + NE +E S+ PD++I+DGGK Sbjct: 434 RFRIKG--VEGPNDFEMMREVLTRRFKRATSNE--------YRETSWGKLPDLIIIDGGK 483 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 GQL A VL+ + I + +AK + E F + ++++L LY +QR+ Sbjct: 484 GQLGVAVEVLQSFGL-GNIPVFGLAKQQE-----ELFKPGRSDSIMLPRDSEALYLLQRI 537 Query: 534 RDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL-AS 591 RDEAHRFA+ HR KK+ S LD++ GIGP RK+ L+Q+FG+V I +S + + A+ Sbjct: 538 RDEAHRFALGYHRSLHTKKSVGSILDQVPGIGPKRKKALIQAFGSVSKIREASIDEIMAA 597 Query: 592 IEGISKKIACKIYNHF 607 ++GI + ++ Sbjct: 598 VKGIDRATVIRLKEAL 613 >gi|154484305|ref|ZP_02026753.1| hypothetical protein EUBVEN_02018 [Eubacterium ventriosum ATCC 27560] gi|149734782|gb|EDM50699.1| hypothetical protein EUBVEN_02018 [Eubacterium ventriosum ATCC 27560] Length = 633 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 208/633 (32%), Positives = 329/633 (51%), Gaps = 34/633 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRF 60 ++MP+ PGVY M D V+YVGKA NL++R+ SY + +I M+S+I + Sbjct: 9 ELKKMPQTPGVYLMHDAHDDVIYVGKAVNLKRRVSSYFRKSTKRTTKIESMVSKIRRFEY 68 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE N+IK +P++N +L DDK++PY++IT P + R Sbjct: 69 ILTDSELEALILECNLIKEYRPKYNTMLMDDKTYPYVMITVSEDYPRIVLARRMKKDNNK 128 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA---------------DSVFRHRTRPCLLFQIK 165 YFGPF S AV+ TI+ LQ+ + +RSC ++ + RPCL + I Sbjct: 129 YFGPFTSSAAVKDTIDLLQKMYQIRSCNKAIVSDGTYTADGEYKNIPKINGRPCLYYHIG 188 Query: 166 RCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRL 225 +C GPC G IS E Y E +++A KFL G +++ M +A+ D+E A+ RD + Sbjct: 189 QCKGPCQGYISKEDYRENINKAIKFLEGNYTLTIKELEEKMQEASANLDFEKAMECRDLI 248 Query: 226 AALSHIQNHNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN 282 +++H+ + ++ D + N A +Q F G+ G F+L T T Sbjct: 249 NSINHVAGNQKITTHQFEDRDIIAYAEEGNDAVVQVFFVRNGKLIGREHFYLTTVPGDTG 308 Query: 283 AQILSYFLRQFYTDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 IL+ F++Q+Y P P +L+ EE EE LL + Y V+I PK+G K K++ Sbjct: 309 KDILTSFIKQYYIGTPFIPRELLVQEEVEEPELLSQLLSRNQNYTVRIVNPKKGSKEKLV 368 Query: 342 EQALINA----HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVG 397 E A NA ++ + + +++ + + R+E YD S+ G +V Sbjct: 369 ELAAKNAGNLLEQNKEKYRREQKRTVGAVEEIEELIGIT-GIHRMEAYDISNTNGYESVA 427 Query: 398 CMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK-Q 456 M+V + +N YRKF + VK DD A MR VL RRF I+ E L+ K + Sbjct: 428 SMIVYEDGKPKRNNYRKFRIKS--VKGPDDYASMREVLTRRFRHGIEEREKLDMEEKDYK 485 Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE 516 SF ++PD++++DGGKGQ++ A VL LN+ I + + K E Sbjct: 486 LGSFSNFPDILMMDGGKGQVNIALEVLDSLNLH--IPVCGMVKDDNHRTRG---LYYNNE 540 Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSF 575 + + I R++DE HRFAI HR R KK +S LD+I+G+GP R++ L++ F Sbjct: 541 EIPIAKNSEGFRLITRMQDETHRFAIEYHRSLRNKKQVHSILDDISGVGPARRKALMREF 600 Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 +++ I ++ E L+ ++ IS+K+A IY FH Sbjct: 601 KSIEGIREATVEQLSQVDTISEKVAKDIYKFFH 633 >gi|260578777|ref|ZP_05846684.1| excinuclease ABC, C subunit [Corynebacterium jeikeium ATCC 43734] gi|258603075|gb|EEW16345.1| excinuclease ABC, C subunit [Corynebacterium jeikeium ATCC 43734] Length = 690 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 194/684 (28%), Positives = 321/684 (46%), Gaps = 87/684 (12%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY D RV+YVGKA NL+ R+ +Y + R M+ N++++TV Sbjct: 12 SIPTDPGVYTFRDAHERVIYVGKAKNLRARLSNYFQDLSQLHPRTRAMVQSANHVQWTVV 71 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E+EAL LE IKR PRFN++ RDDK++P + I+ K +IP + +R YFG Sbjct: 72 SSELEALNLEYTWIKRFNPRFNVMYRDDKTYPMLAISVKEQIPRAFMYRGPRRKGVRYFG 131 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P+ A+ +T+ SL R F +R+C+ V+R RPCLL I RCS PC +I+ E + Sbjct: 132 PYPKAWAIRETLESLTRVFPIRTCSAGVYRRHEALGRPCLLGYIDRCSAPCVDKITPEDH 191 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 V + FL+G + ++ + M QA+ D+E A RD+L A+ +++ Sbjct: 192 RALVDQFSSFLAGNTDPVLRRVRKEMEQASENLDFERAASLRDQLQAMQKSMERQAVVFS 251 Query: 241 RM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D + ++ A +Q G+ G + ++ + + ++++ F+ QFY + Sbjct: 252 DNTDADLIAFVADELEAAVQIFHVRGGRIHGQRGWVVER-EDLSEEKLVADFITQFYGET 310 Query: 298 ---------------------------------------------PCPENILLSEEAEET 312 P P IL+ EE Sbjct: 311 AELAKATETQVGGASGPEVDRDLARAINPAAAQDLGDLVGDVQVTPVPREILVHAMPEEA 370 Query: 313 SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI----SHQMILKD 368 L G +V+I VP++G+K+ ++ A NA ++ Q + LK+ Sbjct: 371 EDLAAWLTSLRGSRVEIRVPQRGDKKTLMTTAETNATQALAQHKLKRAGDITARSAALKE 430 Query: 369 FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DD 427 + + P RIE D SHI G V +VV + K YR++ + DD Sbjct: 431 LQEALWMDESPLRIECTDISHIQGTDVVASLVVFEDGLPKKADYRRYKIRDAAGDGHSDD 490 Query: 428 CAMMRMVLERRFSQLIKNEENLN----------------------FHPKKQEYSFPSWPD 465 A + V+ RRF + +++ + P ++ F P Sbjct: 491 VASIAEVVRRRFKRYQQDKSAVPAGDDAGDLLEGETELEDSAAEGTDPASEKRKFAYPPQ 550 Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525 + I+DGG Q++AAQ VL +L + N +T++ IAK + E + + +++ P Sbjct: 551 LFIVDGGLPQVNAAQEVLDELGI-NDVTLVGIAKRLE-----EIWVPGEEYPIIVPRNSP 604 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 LY +Q LRDEAHRFAIT HR++R + S LD+I G+GP R++ L++ FG+V + ++ Sbjct: 605 ALYLVQNLRDEAHRFAITFHRQQRSARMRRSKLDDIPGLGPKRRKQLVKEFGSVMRVKQA 664 Query: 585 SPETLASIEGISKKIACKIYNHFH 608 S E +A++ G K+A I++ + Sbjct: 665 SVEDIAALPGFGPKLAQLIHDALN 688 >gi|226227004|ref|YP_002761110.1| UvrABC system protein C [Gemmatimonas aurantiaca T-27] gi|259710341|sp|C1A8T0|UVRC_GEMAT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|226090195|dbj|BAH38640.1| UvrABC system protein C [Gemmatimonas aurantiaca T-27] Length = 616 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 182/614 (29%), Positives = 291/614 (47%), Gaps = 38/614 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSY-MHSNNHTHRITHMISQINNIRFTVT 63 +PE PGVY D+ G+VLYVGKA L+ R++SY + + + M+ ++ ++ V Sbjct: 9 HLPESPGVYLWKDVEGQVLYVGKAKRLRSRVRSYWAQEHESSPKTRAMVRKVRDLETIVV 68 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E AL+LEA +IK PRFNI LRDDKS+PYI +T P + R YFG Sbjct: 69 PSEAHALILEATLIKEYHPRFNIALRDDKSYPYIRVTVNEPFPRVMVTRRLLDDGARYFG 128 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF-RHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 P+ V A+ + +N ++R F +RSC ++ RPCL + IKRC PC G S E Y Sbjct: 129 PYTDVGAMRRALNVVKRIFTVRSCHYALPGEAPERPCLDYSIKRCKAPCVGYQSREDYRA 188 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIY 239 + E FL G ++ + M A+ + D+E A RD LA L +++ + + Sbjct: 189 MIDEVVWFLDGRTSDVMHHVRERMLDASERLDFERAAELRDALAHLEKMESPSVVLEVEG 248 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 D + AC+ G+ L+ + + +L L Q+Y Sbjct: 249 GDRDVVGYARDGEDACVAVMRIRGGKLLARDHRLLEHAEDEEDGAVLGACLAQWYRTAEA 308 Query: 300 -PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 +L+ + E+ + I VP++G +R +++ A NA Sbjct: 309 RAGELLVPFDFEDRE-----SLEASLDGTHIRVPQRGPRRALVDLADQNARHLLEEFKLA 363 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 L + + + ++ LP +P+ + +D SH G V V +++YRK Sbjct: 364 ALEADERAVDPVYELQRELGLPRLPRSLVCFDISHAQGTDVVASAVFFENGRPKRSEYRK 423 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + + DD M V+ R F + + E+ L PD+ ++DGGKG Sbjct: 424 FKIK--VFEGNDDFRSMHEVVTRYFRRRLDEEKPL--------------PDLAVIDGGKG 467 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 QL AA+ L +L +I +IS+AK + E F + + + L R P L +Q+ R Sbjct: 468 QLGAARAALDELGAP-QIGLISLAKREE-----EIFQYGRPDPVRLPRRSPALRMLQQAR 521 Query: 535 DEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DEAHRFAIT R++R + S L +I G+GP ++R LL +FG+V+ + +S E +A+I Sbjct: 522 DEAHRFAITFQRQKRAARTITSELLKIPGVGPTKRRALLHTFGSVQGVREASVEQIAAIP 581 Query: 594 GISKKIACKIYNHF 607 G A ++ Sbjct: 582 GFGAASARRLLEAL 595 >gi|317406698|gb|EFV86861.1| UvrABC system protein C [Achromobacter xylosoxidans C54] Length = 609 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 210/614 (34%), Positives = 321/614 (52%), Gaps = 28/614 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+ LD AG V+YVGKA +L+KR+ SY N + RI M++++ + TVT Sbjct: 13 DLPHLPGVYRHLDAAGEVMYVGKARDLKKRVSSYFQKNLASPRIAQMVAKVARLEVTVTR 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EAL+LE N+IK LKPR+NIL RDDKS+PY+LIT H P + +R ++ +G YFGP Sbjct: 73 SEAEALILENNLIKSLKPRYNILFRDDKSYPYLLIT-GHDWPRIAYYRGATNKRGQYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F + AV +TI LQ+ F LR+C D+VF +R+RPCLL QI RCS PC G + ++ Y V Sbjct: 132 FPNAWAVRETIQILQKVFRLRTCEDTVFANRSRPCLLHQIGRCSAPCVGAVQAQDYASDV 191 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNR 241 A +FL+G ++ +I M +A +E A RD++ +L+ + + + Sbjct: 192 QRAVRFLNGEAKDVMGEIEARMLEAAEALRFEEAAALRDQMGSLARVLHQQTMENVSGED 251 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D ++ C+ G++ G FF Q+L F+ Q YTD P Sbjct: 252 TDIVAVAIAGGKVCVNLAMVRGGRHLGDKPFFPTHAEGEAAPQVLEAFVAQHYTDNALPP 311 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 ++ S + L+++ + G ++ QG +R +EQA+ NA + + L+ + Sbjct: 312 VLVCSHALPDAGLIDLLVEQAGGRPSRVLTRPQGARRAWLEQAVKNAEMALARALTESGA 371 Query: 362 HQMILKDFTKKFALPHIPK-----RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + L RIE +D SH G + VV + + YR++N Sbjct: 372 RAARTLALAETLDLDTDEAALDALRIECFDISHTAGEATQASCVVFEHHDMQPSLYRRYN 431 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + DD A MR VL RRF+++ E P +V++DGGKGQ+ Sbjct: 432 I--AGITPGDDYAAMRQVLTRRFAKVADGE--------------AQMPGLVLIDGGKGQV 475 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRD 535 A+ V +L ++ + ++ +AKG R G+E G + L L I ++RD Sbjct: 476 EVARQVFAELGLDIQ-ALVGVAKGEGRKVGLETLVFADGRPPVALGGESAALMLIAQVRD 534 Query: 536 EAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFAIT R RR K S L+EI G+G R++ LL FG ++ +S E LAS++G Sbjct: 535 EAHRFAITGMRARRAKTRNVSRLEEIEGVGARRRQRLLARFGGFSGVASASIEDLASVDG 594 Query: 595 ISKKIACKIYNHFH 608 IS+++A +IY Sbjct: 595 ISEELAERIYEALR 608 >gi|255523402|ref|ZP_05390371.1| excinuclease ABC, C subunit [Clostridium carboxidivorans P7] gi|296184685|ref|ZP_06853096.1| excinuclease ABC subunit C [Clostridium carboxidivorans P7] gi|255512860|gb|EET89131.1| excinuclease ABC, C subunit [Clostridium carboxidivorans P7] gi|296050467|gb|EFG89890.1| excinuclease ABC subunit C [Clostridium carboxidivorans P7] Length = 622 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 194/621 (31%), Positives = 318/621 (51%), Gaps = 19/621 (3%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFT 61 + +P+ PGVY M + G ++YVGKA L+ R+K Y ++ NH+ ++ M+ I + Sbjct: 8 LKVLPDKPGVYLMKNSLGEIIYVGKAKVLKNRVKQYFQNSRNHSEKVKAMVKNIAEFEYI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT +E+EAL+LE N+IK+ PR+NILL+DDK +P+I IT P ++ R + G Y Sbjct: 68 VTDSEMEALILECNLIKKYTPRYNILLKDDKHYPFIKITTNEDFPRIFVTRILAKDGGKY 127 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSEK 179 FGP+ AV +TI L++ F +R+C + + RPCL + I C PC G I+ + Sbjct: 128 FGPYTDSSAVYETIEFLKKIFPIRTCRKLIKESSEKIRPCLNYHIGLCKAPCGGHITKNE 187 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + V + LSG + + + +M +A+ ++E A RD++ A+ I I Sbjct: 188 YNKMVGNIIELLSGKDKVIINSLTSDMEEASENLEFEKAAALRDKIMAVRKITEKQKIIT 247 Query: 240 NRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 D ++Y ++ +CIQ F G+ G F ++ + N +I++ F++ FY Sbjct: 248 GNFEDEDFINVYSDEKDSCIQVFFLRNGKITGREHFIIENTEGTNNEEIIADFIKGFYGG 307 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 + E E+ LLE + G KV + +P++G K+ + NA + Sbjct: 308 TAYIPKTMYVPEVEDQILLEQWLAIKRGSKVNVKIPQKGSKKDTLNLVQKNAKMTLENFK 367 Query: 357 STEISHQMI----LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 I + + LKD + L I RIE YD S+I G +VG MVV E + Y Sbjct: 368 LKFIQDRKLYDESLKDLSSILRLEDIAHRIEAYDISNIQGVDSVGTMVVFEEGRPKNSDY 427 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP-KKQEYSFPSWPDVVILDG 471 R+F N VK +D MR +L RRF + E + + F +PD++++DG Sbjct: 428 RRF--KINTVKGANDYESMREILTRRFQHGLDEIEKIQKTKLELSAGKFCVFPDLILMDG 485 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GKGQ++ A VLKK ++ I + + K K + + E ++++ ++ + Sbjct: 486 GKGQVNIALEVLKKFDI--NIPVCGMVKDDKHNTRG---IIYNNEEILIDSHSNVMKLVT 540 Query: 532 RLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 R++DE HRFAIT HR R K+ +S L++I +G R++ LL+SFG+++ I + E L Sbjct: 541 RIQDEVHRFAITYHRSLRNKRILHSILEDIPNVGEKRRKELLKSFGSIENIKVAKYEELI 600 Query: 591 SIEGISKKIACKIYNHFHKNT 611 + I +K A I +F N Sbjct: 601 KVPSIDRKAAESIIEYFRGND 621 >gi|270261294|ref|ZP_06189567.1| excinuclease ABC subunit C [Serratia odorifera 4Rx13] gi|270044778|gb|EFA17869.1| excinuclease ABC subunit C [Serratia odorifera 4Rx13] Length = 588 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 215/606 (35%), Positives = 329/606 (54%), Gaps = 31/606 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D G V+YVGKA +L+KR+ SY + + ++ I I TVT TE EALLLE Sbjct: 1 MYDATGTVIYVGKAKDLKKRLVSYFRQQVGSRKTEALVKNIAQIDVTVTHTETEALLLEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK +PR+N+LLRDDKS+P I ++ P L HR + +G YFGPF + AV +T Sbjct: 61 NYIKLYQPRYNVLLRDDKSYPLIFLS-ADSHPRLAVHRGAKHAKGEYFGPFPNSYAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193 + LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y + V + FLSG Sbjct: 120 LALLQKLFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYQQQVDYVRLFLSG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYNRMDCFSLYHNK 251 + + ++ M A+ ++E A RD++ A+ + + +D + Sbjct: 180 KDQQVLHQLIERMENASKALNFEDAARIRDQIQAVRRVTERQFVSGNSDDLDVIGVAFEA 239 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSE 307 +AC+ F G+ G+ ++F K + ++++ F+ QFY + P ILL Sbjct: 240 GMACLHVLFIRQGKVLGSRSYFPKVPGGTEMSEVVQTFVGQFYLQGSQARTLPAEILLDF 299 Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367 E LL S + G K++I +G++ + ++ A NA + T KLS + + L Sbjct: 300 NLPEKDLLAESLSELAGRKIQIQSKPRGDRARYLKLARTNAATALTTKLSQQSTIHQRLA 359 Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427 + TK L R+E +D SH MG V VV NG ++++YR++N+ + DD Sbjct: 360 ELTKILNLS-EINRMECFDISHTMGEQTVASCVVFDGNGPLRSEYRRYNI--AGITPGDD 416 Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487 A M VL+RR+ + ++ + PDV+ +DGGKGQL A V LN Sbjct: 417 YAAMAQVLKRRYGKALEENK---------------IPDVIFIDGGKGQLGMAIEVFNSLN 461 Query: 488 V---ENRITIISIAKGPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 V +N+ +I IAKG R AG+E FFV +GE + L P L+ IQ +RD++H AIT Sbjct: 462 VTWDKNKPLLIGIAKGADRKAGLETLFFVPEGEGISLPSDSPALHVIQHIRDDSHNHAIT 521 Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR+RR K S L+ I+G+GP R+++LL+ G ++ + +S E +A + GIS+ +A K Sbjct: 522 GHRQRRAKVRNTSALELIDGVGPKRRQVLLKYMGGLQPLLNASVEEIAKVPGISQALAEK 581 Query: 603 IYNHFH 608 IYN Sbjct: 582 IYNALK 587 >gi|307545401|ref|YP_003897880.1| excinuclease ABC subunit C [Halomonas elongata DSM 2581] gi|307217425|emb|CBV42695.1| excinuclease ABC subunit C [Halomonas elongata DSM 2581] Length = 604 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 218/613 (35%), Positives = 330/613 (53%), Gaps = 25/613 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + E PGVY+MLD G LYVGKA L+ R+ SY +T + ++S+I +I+ TV Sbjct: 9 LDTITESPGVYRMLDEQGETLYVGKARRLKARLASYFRGTLNT-KTQALVSRIADIQVTV 67 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSY 121 T +E EALLLE +IK +P +NILLRDDKS+P++ +TD+H PAL R + G Y Sbjct: 68 TNSETEALLLEQTLIKEQRPPYNILLRDDKSYPFVFVTDRHPYPALEYKRARTRHGDGRY 127 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 GP+ S AV ++++ +Q+ F +R+C DSVF HR+RPCL +QI RCS PC G I + Y Sbjct: 128 LGPYPSSGAVRESLSLMQKIFRIRNCEDSVFAHRSRPCLQYQIGRCSAPCVGYIDEDDYR 187 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--Y 239 + A + L G + + +++ R+M A+ D+E A RD++ L +Q Sbjct: 188 RDLEHAVQCLEGKSEMVTQELTRDMEAASQALDFEEAARLRDQIQQLRQLQQRQFVDTGS 247 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--TDK 297 D F+L CI G+ G + T +L F+ Q+Y + Sbjct: 248 GDADIFALASRPGALCISVLSVRGGRLLGARHHTPSNGLDLTPDTLLGDFISQYYLGQAR 307 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P I+ S +T L+ + + G +V++T +G + + E A NA + + +L+ Sbjct: 308 EIPAEIITSHALTDTDLIARALETRAGKRVRVTARVRGHRAQWQELARTNAEQQLSSQLA 367 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 ++ +L +P R+E +D SH G + V VV NG K+ YR+FN+ Sbjct: 368 SQSQLAQRFAALGDALSLERVPARLECFDISHSHGEATVASCVVFDANGPRKSDYRRFNI 427 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 +++ DD A MR L RRF +L E PD++I+DGGKGQL+ Sbjct: 428 K--NIEAGDDYAAMRQALTRRFKRLKDGE--------------GEAPDLLIVDGGKGQLN 471 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLRDE 536 A+ V +L VE + +I +AKG R AG+E F++ L L+ P L+ +Q +RDE Sbjct: 472 MAREVFAELGVEG-VGLIGVAKGTTRKAGLETLFIETPDRTLDLDTSSPALHLLQHIRDE 530 Query: 537 AHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 +HRFAIT HR RR KA S L +I G+GP R+R LL+ FG ++ + ++S E LA + GI Sbjct: 531 SHRFAITGHRTRRDKARRTSTLQDIPGVGPRRRRELLRFFGGLQGVRQASREELARVPGI 590 Query: 596 SKKIACKIYNHFH 608 S +A I+ H Sbjct: 591 SATLAESIHRALH 603 >gi|218778629|ref|YP_002429947.1| excinuclease ABC subunit C [Desulfatibacillum alkenivorans AK-01] gi|226695484|sp|B8FHR2|UVRC_DESAA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|218760013|gb|ACL02479.1| excinuclease ABC, C subunit [Desulfatibacillum alkenivorans AK-01] Length = 603 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 205/611 (33%), Positives = 317/611 (51%), Gaps = 27/611 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVT 63 + PGVY M D +G ++YVGKA +L+KR+ SY N + ++ +I + + Sbjct: 10 TLSNGPGVYLMKDESGEIIYVGKARSLKKRVSSYFLEKPNRDLKTGILVKKIASFDAILV 69 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EAL+LEAN+I++ KPR+NILL+D K FP + I + P L R YFG Sbjct: 70 TTEKEALILEANLIRKHKPRYNILLKDGKRFPSLRIDVRTSYPRLEVVRKVKKDGAIYFG 129 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PF+S + T+ + +TF LR C R RPCL +Q+ +C GPC + ++Y++ Sbjct: 130 PFSSAGKLRSTLKIINKTFQLRKCKQKEPPKRNRPCLNYQMGQCLGPCCLPVDRDEYLDM 189 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM- 242 V+E FL G ++L +KI M A+ +++YE A RDR+ A+ ++ Sbjct: 190 VNEVILFLKGRTNDLLQKIKEQMAAASERQEYELAARLRDRMFAIQATVEKQAAVTTDFV 249 Query: 243 --DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DKPC 299 D + + I + G G+ + T+++ + FLRQ+Y D+ Sbjct: 250 DRDVIGIDREPEGSAISVLYIRGGFLLGSRNYNFDEVLG-TDSESIQAFLRQYYDKDRFI 308 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P+ + + + E L+E + +V + P++GEK ++IE A NAH + ++S+E Sbjct: 309 PDEVFVPCQLENMELMEQWLTETAEKRVVLHWPQRGEKTRLIEMANENAHEALKDRISSE 368 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + +L+ K+ + P+RIE +D SH G V M+V + K++YR FN+ Sbjct: 369 NVFKSLLERLQKRLRMDRPPRRIECFDISHTGGNQTVASMIVFEDGKEAKSEYRTFNI-- 426 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + + DD A M V+ RRFS PDV+++DGGKGQLS Sbjct: 427 DSLDHPDDYAAMHEVMARRFS----------------PDKDWPTPDVLLIDGGKGQLSIT 470 Query: 480 QGVLKKLNVENRITIISIAKGPK-RSAGMEKFF-VKKGEALVLNMRDPILYFIQRLRDEA 537 VL L V +ISIAK + + M+K + + +V +L F+QR+RDEA Sbjct: 471 ASVLDGLGVMGAFEVISIAKKDEAKKETMDKIYRPGQANPVVFGRDGDVLLFLQRVRDEA 530 Query: 538 HRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAITTHRK+R K S LD + GIG RK+ LL+ FG++K + +SPE +A + GIS Sbjct: 531 HRFAITTHRKKRAKTIRKSALDSVPGIGEKRKKALLRHFGSIKRLKEASPEDIAQVPGIS 590 Query: 597 KKIACKIYNHF 607 K A +I Sbjct: 591 VKRAQEILEAL 601 >gi|264677810|ref|YP_003277716.1| excinuclease ABC subunit C [Comamonas testosteroni CNB-2] gi|262208322|gb|ACY32420.1| excinuclease ABC, C subunit [Comamonas testosteroni CNB-2] Length = 650 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 208/642 (32%), Positives = 321/642 (50%), Gaps = 46/642 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PGVY+ D AG +LYVGKA NL++R+ SY ++ RI HM+S+I + TV + Sbjct: 16 LPPLPGVYRYFDAAGVLLYVGKAINLKRRVSSYFQKDHGGTRIGHMVSKIARLETTVVRS 75 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILIT------DKH------KIPALYKHRD 113 E EALLLE N+IK L P++NIL RDDKS+PY+ IT K + P + +R Sbjct: 76 EAEALLLENNLIKTLYPKYNILFRDDKSYPYLKITGVAHRDGKEGEPAFQEFPRIAYYRG 135 Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 + + YFGP+ S AV+++I LQ+ F LR+C D+VF +R+RPCLL+QIKRC+GPC Sbjct: 136 AVDKKHRYFGPYPSAWAVKESIQLLQKVFRLRTCEDTVFANRSRPCLLYQIKRCTGPCVD 195 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 IS E Y V A+ L G L +++ M + K ++E A R++L ALS + + Sbjct: 196 LISPEAYALDVRNAEAMLRGETSELLQQLEARMMAHSDKLEFEQAAEVRNQLTALSRVLH 255 Query: 234 HNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST--------- 281 D ++ AC+ G++ G +F ++ Sbjct: 256 QQAIETTDDKDVDILAVRVQGGRACVNLAMVRGGRHLGDRPYFPANLGDAASVYSSEEEV 315 Query: 282 ---------NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVP 332 +L F+ Q Y P +++S E+ + +Q G ++ + Sbjct: 316 DAAAEARPVEELVLEAFIAQHYVGVAVPPTLVVSHPVEKRLV--ELLTEQTGVRITVVQQ 373 Query: 333 KQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKR---IEIYDNSH 389 + ++R +E A NA + L+ E S Q + + LP IE +D SH Sbjct: 374 PREQRRIWLEMAQKNADIQLARLLAEEGSQQARTRALAEALDLPVENLDELTIECFDISH 433 Query: 390 IMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL 449 G + VV + + YR+FN+ + DD A MR VL RR+ + + + Sbjct: 434 TSGENTKASCVVFHHHKMQSSDYRRFNIEG--ITGGDDYAAMRQVLTRRYKPVAEAQREA 491 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 P PD+V++DGGKGQ+S A+ V +L ++ I+ + KG R G+E+ Sbjct: 492 GGAELT--GKQPHLPDLVLVDGGKGQVSMAREVFTELGLDLS-RIVGVEKGEGRKVGLEE 548 Query: 510 FFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--SPLDEINGIGPL 566 G + + L L + ++RDEAHRFAIT R R K S L++I G+GP Sbjct: 549 LVFADGRDKVYLGHDSAALMLVAQIRDEAHRFAITGMRAARAKVRTGSSSLEDIAGVGPK 608 Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LLQ FG V+ ++ +S + L ++EGIS +A +IY H Sbjct: 609 KRARLLQRFGGVRGVADASVDDLMTVEGISATLAEEIYKALH 650 >gi|169830506|ref|YP_001716488.1| excinuclease ABC subunit C [Candidatus Desulforudis audaxviator MP104C] gi|229558021|sp|B1I0W9|UVRC_DESAP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|169637350|gb|ACA58856.1| excinuclease ABC, C subunit [Candidatus Desulforudis audaxviator MP104C] Length = 614 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 190/621 (30%), Positives = 322/621 (51%), Gaps = 19/621 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + P+ PGVY G VLYVGKA +L+ R++SY + ++ ++ + ++ Sbjct: 6 KVKHFPDKPGVYLFRGARGEVLYVGKAVSLKNRVRSYFTGAR-SDKVQALVGKTRDVECL 64 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT +E+EAL+LE+N+IK +PR+N++L+DDKS+PY+ +T + + P ++ R Y Sbjct: 65 VTGSEIEALILESNLIKEHRPRYNVVLKDDKSYPYLKVTVQEEYPRIFLTRAQPRDGARY 124 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ S AV +T+ L++ F LRSC + FR + RPCL I RC GPC+G + E+Y Sbjct: 125 FGPYPSAAAVHETVRLLKKLFPLRSCRQTRFRQQ-RPCLNHHIGRCLGPCSGTVDPERYR 183 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 V E FL G + +L +AR M A ++E A RD+L A+ + + Sbjct: 184 AMVQEVLLFLEGRHADLVRGLARKMEAAAANLEFERAAELRDQLRAVEQVLARQSIVSPG 243 Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D +L + N + G+ G + L+ +E ++A++L+ FL+Q+Y + Sbjct: 244 REDRDVLALARDGNRGRVIVLEIRDGKLLGRHSLDLQGIAERSDAEVLAAFLKQYYREAG 303 Query: 299 -CPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P +LL EE L+ + +V++ VP++G KR+++ A NA + Q Sbjct: 304 LIPPEVLLPVPLGEEQGLIAEWLGLRRQGRVRLHVPRRGRKRELVRLAEQNAAEARAQME 363 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + + + + L P R+E YD S++ G VG MVV + +YR+F Sbjct: 364 FERDAGEAL-AELAAVLGLDQAPARLEGYDISNLQGAQTVGVMVVFEDGRPAPGEYRQFR 422 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + D AM +V R + + ++ F PD+V++DGGKGQL Sbjct: 423 VRETAGTPNDFAAMREVVARRFARAREEGKLIATGRLSSRDARFHRLPDLVLVDGGKGQL 482 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 SAA L++ E + + ++ K ++ F + + + + L+ +Q LRDE Sbjct: 483 SAALEGLRETGFE-AVPVFALTKEEEK-----IFAPGRSDPVPVPPGSQALFLLQHLRDE 536 Query: 537 AHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 AHRFA+ THR+ R + + S L+EI+GIGP R+R L ++F ++ + ++ LA++ + Sbjct: 537 AHRFAVDTHRRTRSRESLRSLLEEIDGIGPARRRALQKAFPSLDALKGATLAELAAVPSM 596 Query: 596 SKKIACKIYNHFHKNTSHTPT 616 ++K A +Y++F TPT Sbjct: 597 NRKAAQAVYDYFQ----DTPT 613 >gi|238923101|ref|YP_002936614.1| excinuclease ABC subunit C [Eubacterium rectale ATCC 33656] gi|238874773|gb|ACR74480.1| excinuclease ABC subunit C [Eubacterium rectale ATCC 33656] gi|291528585|emb|CBK94171.1| excinuclease ABC, C subunit [Eubacterium rectale M104/1] Length = 624 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 190/620 (30%), Positives = 320/620 (51%), Gaps = 21/620 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRF 60 +++P+ PGVY M D ++Y+GKA +L KR+ Y ++++ + M+ I++ + Sbjct: 10 ELKKLPDAPGVYIMHDKDDVIIYIGKAKSLTKRVHQYFQASHNEGIKKKQMVEHIDHFEY 69 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK P++N +LRDDK++PYI +T P + R + Sbjct: 70 IVTDSELEALVLECNLIKEHTPKYNTMLRDDKTYPYIKVTLGEDYPRVLFSRQMKKDKSR 129 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV+ +I+ + + + LR+C + R RPCL + I +C+ PC G ++ E Sbjct: 130 YFGPYTSASAVKSSIDLINKIYKLRTCNRRLPRDIGADRPCLNYHIHQCNAPCQGYVTKE 189 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y V A FL+G + ++ M +A+ ++E A +RD + ++ + Sbjct: 190 EYAISVKGAIDFLNGDYEQTIKALSDKMLKASESMEFEKAAEYRDLINSVKQVAQKQKIT 249 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D +L ++ A +Q F G+ G F ++ SE +L+ F++QFY+ Sbjct: 250 NADGEDKDIIALANDDTDAVVQVFFIRNGKLIGRDHFHVRVGSEEAADDVLNNFVKQFYS 309 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HR 350 P P ++L E E+ ++LE ++ G +V I VP++G K K++E A NA + Sbjct: 310 GTPFIPREVMLQSEIEDMAVLEQWLSEKRGRRVNIKVPQKGMKEKLVELAYKNALLVLSQ 369 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E +K+ L H R+E YD S+I G VG M+V + K+ Sbjct: 370 DKERIKREEGRTIGAVKEIEGLLGL-HGLNRMEAYDISNINGFETVGSMIVYEKGKPKKS 428 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE-YSFPSWPDVVIL 469 YRKF L V DD A M VL RRF+ ++ ++ L QE SF +PD++++ Sbjct: 429 DYRKFKLRT--VTGPDDYASMHEVLTRRFTHGMEEQKQLEKDGSPQEIGSFNRFPDIIMM 486 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGG+GQ++ VL +L ++ I + + K + ++ Sbjct: 487 DGGRGQVNICLQVLSELGLD--IPVCGMVKDDFHRTRG---LYYNNVEIPIDRHGEGFKL 541 Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 I R++DEAHRFAI HR R K+ +S LD+I GIGP R++ L++ + +++ I + E Sbjct: 542 ITRIQDEAHRFAIEFHRSLRSKSQVHSVLDDIEGIGPARRKALMRRYQSLEKIKEADVED 601 Query: 589 LASIEGISKKIACKIYNHFH 608 L E +++K A +Y FH Sbjct: 602 LMQTETMNEKAAQAVYAFFH 621 >gi|16330212|ref|NP_440940.1| excinuclease ABC subunit C [Synechocystis sp. PCC 6803] gi|3024785|sp|P73580|UVRC_SYNY3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|1652700|dbj|BAA17620.1| excinuclease ABC subunit C [Synechocystis sp. PCC 6803] Length = 626 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 199/621 (32%), Positives = 316/621 (50%), Gaps = 32/621 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFT 61 +++P+ PGVY M D G +LY+GKA L+ R++SY + HT RI M+ Q+ I F Sbjct: 21 LQEIPQEPGVYFMGDRQGEILYIGKAKKLRTRVRSYFRDSQPHTARIALMVQQVAEIEFI 80 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQG 119 VT TE EAL LEAN+IK+ +P FN+LL+DDK +PY+ IT P ++ R + Sbjct: 81 VTDTEAEALALEANLIKQHQPHFNVLLKDDKKYPYVCITWSETYPRIFITRKRRLNQAKD 140 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 Y+GP+ ++ +T+ +QR F LR +F+H RPCL + I RC G C I+ E Sbjct: 141 RYYGPYVDSFSLRQTLRLIQRIFPLRQRRQPLFKH--RPCLNYDIGRCPGVCQELITPED 198 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + + + G L + + + M +A +E A + RD++ +L + Sbjct: 199 YRQTLQKVAMVFQGRTQELHQLLTQQMEKAAADLKFEQAALIRDQINSLGKLNADQKVSL 258 Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLK-TDSESTNAQILSYFLRQFY 294 + D ++ + ++ IQ G+ G FF +SE ++L L Q Y Sbjct: 259 PQDTISRDAIAVASDGQISAIQLFQIRAGRLVGRLGFFADGVESELEKGEVLQRVLEQHY 318 Query: 295 TD---KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 P ++L + LL Q G KV +P++ K +++E NA Sbjct: 319 QQVEAVEIPSEVILPCALPDGELLNDWLTSQRGRKVTFNLPQRQTKAELLEMVERNAQYE 378 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 + + L+D + L +PKRIE YD SHI G +AV VV + + Sbjct: 379 LERLQKQTAKNVTALEDLAEILNLETLPKRIEGYDISHIQGSNAVASQVVFIDGVPAQQY 438 Query: 412 YRKFNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 YR + + +K DD A + V+ RRF +K ++N WPD++++ Sbjct: 439 YRHYKIKNPSIKVGHSDDFASLAEVIIRRFQSSVKGKKNQQ-----------DWPDLIMI 487 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQLSA VLKK+++ ++ T++S+AK + E F + + L + P + Sbjct: 488 DGGKGQLSAVVKVLKKMDLLDKFTVVSLAKQRE-----EIFLPGESQPLPTHAEQPGVQL 542 Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 ++RLRDEAHRFA++ HR++R K+ S LDEI G+G R++ LL F ++ I +S + Sbjct: 543 LRRLRDEAHRFAVSFHRQQRLSKSRRSRLDEIPGLGFSRQKQLLAHFRSLDYIREASVKQ 602 Query: 589 LASIEGISKKIACKIYNHFHK 609 L + GI ++A IY++FH Sbjct: 603 LQEVPGIGPQLAQTIYDYFHP 623 >gi|209695581|ref|YP_002263510.1| excinuclease ABC subunit C [Aliivibrio salmonicida LFI1238] gi|226698343|sp|B6EI86|UVRC_ALISL RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|208009533|emb|CAQ79825.1| UvrABC system protein C (excinuclease ABC subunit C) [Aliivibrio salmonicida LFI1238] Length = 608 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 202/616 (32%), Positives = 320/616 (51%), Gaps = 31/616 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY+M + V+YVGKA +L+KR+ SY SN + + +++ I I TVT Sbjct: 12 SVTHQPGVYRMYNAEAEVIYVGKAKDLKKRLSSYFRSNIPSEKTKALVTHIAQIDVTVTH 71 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EAL+LE N IK+ P++N+LLRDDKS+PYI I++ HK P + HR + +G YFGP Sbjct: 72 TETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFISN-HKHPRISIHRGTKRKKGEYFGP 130 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183 + AV +++ +Q+ F +R C DSV+ +R RPCL+ QI RC PC IS E Y E Sbjct: 131 YPDSGAVRDSLHLIQKLFPIRQCEDSVYANRHRPCLMHQIGRCLAPCVKGIISDEDYAEQ 190 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240 + FL G + + + + M A+ ++E A RD++ ++ +Q + Sbjct: 191 TEFIRLFLQGKDRQVIQSLVEQMEGASQALNFEKAATIRDQIQSMRRVQEQQYVSDESSD 250 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-- 298 +D LACI G+ G+ +FF K +++ ++ S FL Q+Y + Sbjct: 251 DLDVLGFTIENGLACIHLLMIRHGKILGSRSFFPKIPAKTEKEEVFSSFLTQYYLNHSQG 310 Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P ++ S E E L + + PK + R + + A NA + T K Sbjct: 311 RTIPNRVITSFEFESEGLEQALTELSGRKVLFQLNPKGMKGRYL-KLADTNALSALTSKA 369 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + +++ K + +L +R+E +D SH MG V VV + G VK++YR++N Sbjct: 370 NHKLTVYQRFKQLEEALSLA-SIQRMECFDISHTMGEKTVASCVVFNQEGPVKSEYRRYN 428 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + DD A M VLERR+S+ + ++ PD+V +DGGKGQL Sbjct: 429 I--TGITGGDDYAAMAQVLERRYSKQLDIDK---------------IPDIVFIDGGKGQL 471 Query: 477 SAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 + A V+++ + R ++ IAKG R G+E GE + P L+ IQ +R Sbjct: 472 NRAYDVIRQHWGDWPKRPLLLGIAKGVTRKHGLETLVKITGEEFSMPSDSPALHLIQHIR 531 Query: 535 DEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE+H AI+ HR +R K S L I G+GP R++ LLQ G ++ + ++S E ++ + Sbjct: 532 DESHNHAISGHRAQRAKVRKTSTLQHIEGVGPKRRQALLQYLGGLQELKKASVEEISKVP 591 Query: 594 GISKKIACKIYNHFHK 609 GIS+ +A KI + + Sbjct: 592 GISRSLAEKIQDALKQ 607 >gi|289432901|ref|YP_003462774.1| excinuclease ABC subunit C [Dehalococcoides sp. GT] gi|288946621|gb|ADC74318.1| excinuclease ABC, C subunit [Dehalococcoides sp. GT] Length = 607 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 213/613 (34%), Positives = 332/613 (54%), Gaps = 27/613 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +PE PGVY M + G ++YVGKA L+ R+KSY ++ T + ++SQIN + + +T Sbjct: 12 SLPENPGVYLMKNAQGEIIYVGKAAVLKDRVKSYFVPPSHLTPKTCQLVSQINELEYLIT 71 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E EAL+LE N+IKR +P FN+ L+DDK FPY+ IT K P +Y R + G YFG Sbjct: 72 GSEQEALILELNLIKRHRPYFNVRLKDDKGFPYLKITLNEKWPRIYITRSMADDGGRYFG 131 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFA+ +V T+ L+ F RSC + R+RPCL + I +C PCTG+IS Y Sbjct: 132 PFANTRSVRHTLQVLKELFRFRSCNRTEPEKRSRPCLEYDIHQCLSPCTGKISKSDYDHL 191 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND---SIYN 240 + +A FL G + + + R MN+A+ + DYE+A + RD++A++ + + Sbjct: 192 ISQAILFLEGKQDQVLKLLIRLMNEASARLDYETAALRRDQIASIKEVIEGQQLAARVTG 251 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-C 299 D + +L+ +Q F G+ G +F L+ E ILS F +QFY Sbjct: 252 EQDAIAFAQEGDLSMVQVFFIRRGKLIGRESFCLQGTREEKPGDILSEFAKQFYHSSTQI 311 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQK 355 P I+ + +LE ++ G KV ITV +G+ +++I NA ++ + Sbjct: 312 PPKIVTQYPVSDREILEKWLSQRRGDKVHITVGLRGQPKELINIVAENAREQLKQARIKN 371 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS+ ++ L + L P+RIE YD S+I G +AVG MVV K YR+F Sbjct: 372 LSSSVTLTDALAELQTALGLSLPPQRIEGYDISNIQGTNAVGSMVVFENGKPQKAHYRRF 431 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 + VK DD +M++ V+ RRF ++ + + SF P ++++DGGKGQ Sbjct: 432 RIKT--VKGADDFSMLKEVISRRFGRVHRED---------AGESFARLPSLMLIDGGKGQ 480 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 LS+ + L KL +E + +I +AK + E + K E + L P L +QR+RD Sbjct: 481 LSSVKDALDKLGLEGQ-AVIGLAKEFE-----EIYLPHKPEPIRLAANSPALQLLQRVRD 534 Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFA+ H R+K+ S LD I G+GP R+RLL+++FG+V I ++S + L+ ++G Sbjct: 535 EAHRFALGYHLHIRQKSGLTSALDGIPGVGPSRRRLLIKTFGSVAGIRQASFDELSQVKG 594 Query: 595 ISKKIACKIYNHF 607 I++ +A I Sbjct: 595 INQALAISIKELL 607 >gi|197302421|ref|ZP_03167476.1| hypothetical protein RUMLAC_01149 [Ruminococcus lactaris ATCC 29176] gi|197298319|gb|EDY32864.1| hypothetical protein RUMLAC_01149 [Ruminococcus lactaris ATCC 29176] Length = 622 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 200/620 (32%), Positives = 324/620 (52%), Gaps = 21/620 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M D ++YVGKA +L+ R++ Y S+ N + +I M++ I + Sbjct: 11 ELKKLPGRPGVYIMHDEKDHIIYVGKAISLKNRVRQYFQSSYNKSVKIQQMVTHIRRFEY 70 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK +P++N +L DDK++P+I +T P + R + Sbjct: 71 IVTDSELEALVLECNLIKEHRPKYNTMLMDDKAYPFIKVTTGETFPRVLLARKMVKDRAR 130 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV TI+ + + + +RSC ++ R + RPCL + I +C PC G IS + Sbjct: 131 YFGPYTSSQAVRDTIDLIHKLYHVRSCNRNLPRDTGKERPCLNYHIHQCDAPCQGYISKD 190 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235 +Y + + E +FL+G + +++ M A+ ++E AI +R+ L ++ + Sbjct: 191 EYRKSIDEVIRFLNGNFDGILKELEEKMQAASEALEFEKAIEYRELLNSVKKVAQKQKIT 250 Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 DS D ++ ++ A +Q F G+ G F+L+ T A+IL F++Q+Y Sbjct: 251 DSSGEDRDVLAVACQEDDAVVQVFFIRGGRLIGRDHFYLRISKGETKAEILDSFIKQYYA 310 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351 P P ++L EE EE +LLE + G KV I +PK+G K K++E A NA Sbjct: 311 GTPFIPGELMLQEELEEQALLEEWLSTKRGQKVTIRIPKKGTKEKLVELAGENAQLVLNK 370 Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E +K+ + I R+E YD S+ G +VG M+V +N Sbjct: 371 DKERLKREEGRTIGAVKEIAALLGMERIV-RMEAYDISNTNGFESVGSMIVYENGKPKRN 429 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLN-FHPKKQEYSFPSWPDVVIL 469 YRKF + VK +D A MR VL RRF +K +E L Q SF ++PD++++ Sbjct: 430 DYRKFKIKS--VKGPNDYASMREVLTRRFQHGLKEKEELRKKGEDSQLGSFTAFPDLILM 487 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGG+GQ++ A VL +L++ I + + K + ++ Sbjct: 488 DGGRGQVNIALQVLDELHL--NIAVCGMVKDDHHRTRG---LYYNNIEIPIDRDSEAFRL 542 Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 I R++DEAHRFAI HR+ R K +S LD+I GIG R++ L++ F ++ I +S E Sbjct: 543 ITRIQDEAHRFAIEYHRQLRGKGQVHSVLDDIPGIGSARRKALMRHFLSLDAIRDASVEE 602 Query: 589 LASIEGISKKIACKIYNHFH 608 LA I +++K A +Y H Sbjct: 603 LAKIPSMNQKAAESVYEFLH 622 >gi|284031184|ref|YP_003381115.1| excinuclease ABC subunit C [Kribbella flavida DSM 17836] gi|283810477|gb|ADB32316.1| excinuclease ABC, C subunit [Kribbella flavida DSM 17836] Length = 681 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 193/629 (30%), Positives = 312/629 (49%), Gaps = 42/629 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P+ PGVY+ D AGRV+YVGKA NL+ R+ SY N R M++ + +TV Sbjct: 13 SIPDSPGVYRFSDSAGRVIYVGKAKNLRARLSSYFQDLANLHPRTQSMVTTAAKVDWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVE+L LE + IK PRFN+ RDDKS+P++ IT P + R YFG Sbjct: 73 GTEVESLQLEYSWIKEYDPRFNVKYRDDKSYPWLAITLNEDYPRVMVGRGQKKKGIRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F +RSC+ VF RPCLL I +C+ PCTG++S E++ Sbjct: 133 PYSHAWAIRETVDLLLRVFPMRSCSKGVFNRHRQIGRPCLLGYIGKCAAPCTGQVSQEEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 V + FLSG ++ + M A + +YE A RD LAAL N + Sbjct: 193 RRIVEDFSAFLSGQTATYVRRLEKEMKAAAAELEYERAAKMRDDLAALEKALAKNAVVLG 252 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSES---TNAQILSYFLRQFYTD 296 + D + +++ + F+ R D T ++S F++Q Y Sbjct: 253 DGTDTDVVALSEDPLEVAVQIFYVRGGRIRGQRGWIADKADGTATTGDLVSRFIQQMYAG 312 Query: 297 K---PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 + P IL+ ++ + L + G +V I VP++G+K+ ++E NA ++ T Sbjct: 313 EAADAIPREILVPVVPDDEAALTEWLSQLRGSRVAIRVPQRGDKKALMETVERNALQTLT 372 Query: 354 QKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 + S L++ LP P R+E YD S++ G V MVV + K Sbjct: 373 MHKTKRASDLTTRNQALEEIQAALDLPEAPLRLECYDVSNLQGTEVVASMVVFEDGLPRK 432 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPK--------------- 454 ++YR+F + V+ Q+D A + VL RRF +L+ L P Sbjct: 433 SEYRRFVIRG--VEGQNDVASIAEVLTRRFKRLLDERATLTGDPAADGADEPDAAAALID 490 Query: 455 ---KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF 511 + F P +V++DGG Q++AA+ + +L + I + +AK + E + Sbjct: 491 PETGRAKKFSYAPGLVVVDGGPPQVAAARQAMDELGL-GDIPVCGLAKRLE-----EVWL 544 Query: 512 VKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRL 570 + + ++ + LY +QRLRDEAHRFAIT HR RR K+ S LD++ G+G +R++ Sbjct: 545 PDEQDPVIFSRTSEGLYLLQRLRDEAHRFAITHHRNRRSKSMVESVLDDVPGLGEVRRKT 604 Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKI 599 LL+ FG+++ + ++ + +A + G ++ Sbjct: 605 LLRHFGSLRKLREATVDEVAGLPGFGRRT 633 >gi|254520586|ref|ZP_05132642.1| excinuclease ABC subunit C [Clostridium sp. 7_2_43FAA] gi|226914335|gb|EEH99536.1| excinuclease ABC subunit C [Clostridium sp. 7_2_43FAA] Length = 622 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 193/617 (31%), Positives = 328/617 (53%), Gaps = 19/617 (3%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFT 61 + +PE PGVY M + G ++YVGKA L+ R++SY S NH+ ++ M+ I+ + Sbjct: 8 LKNLPEKPGVYIMKNSLGEIIYVGKAKILKNRVRSYFQHSKNHSEKVKVMVKNISEFEYI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT +E+EAL+LE N+IK+ PR+NI L+DDK +P+I IT P ++ R + Y Sbjct: 68 VTDSEMEALILECNLIKKHSPRYNIALKDDKFYPFIKITTNDDYPRVFVTRKYAKDGAKY 127 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSEK 179 FGP+ + AV +TI + + F +R+C + + RPCL + IK+C PC G ++ E+ Sbjct: 128 FGPYTNGTAVYETITLINKIFPIRTCKLLINEGGEKVRPCLNYHIKKCIAPCAGYVTKEQ 187 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y E +++ L+G + + + + ++M A++ ++E A +RD++ A+ I Sbjct: 188 YSEMINDIMDILNGKDKTIIKTLKKDMEDASMNLEFEKAAKYRDKILAIEAIVEKQKIFK 247 Query: 240 NR---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 D ++Y ++ +CIQ F G+ G F + ++ ++L F+ FY Sbjct: 248 TMEGDEDFINIYQDEKDSCIQIFFSREGKITGREHFIFENTADDKIGEVLEDFITSFYGG 307 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352 + + E++ L+E + G K I +P++G+K+ ++E NA + Sbjct: 308 TAKIPRTIYVPDIEDSELIEDFLTIKRGAKAWIKIPQKGQKKDMLEMVRNNAKITLEQFK 367 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + L + +++ L++ L P RIE YD S+I G +VG MVV E + Y Sbjct: 368 DKFLKEKEVNRISLEELQYLLDLDESPFRIEAYDISNIQGVDSVGTMVVFEEGKSKNSDY 427 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILDG 471 R+F + VK +D MR +LERRFS ++ ++ + F S+PD++++DG Sbjct: 428 RRFKIKS--VKGANDYDSMREILERRFSHGLEEIKKIQERNLNFSSGKFSSFPDLIMMDG 485 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GKGQ++ A VL+KLN+ I + + K K + + L++N ++ I+ Sbjct: 486 GKGQVNVALEVLEKLNIS--IPVCGLVKDDKHQTRG---IIYNNKELIINRSSNLMQMIR 540 Query: 532 RLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 R++DE HRFAIT HR R K+ +S L++I +G R+R LL FG+V+ I ++ E L Sbjct: 541 RIQDEVHRFAITYHRTLRDKRTLHSILEDIPNVGEKRRRNLLMKFGSVENIKNATLEELL 600 Query: 591 SIEGISKKIACKIYNHF 607 I KK A I ++F Sbjct: 601 ETPSIDKKAAQSIVDYF 617 >gi|299531630|ref|ZP_07045035.1| excinuclease ABC subunit C [Comamonas testosteroni S44] gi|298720346|gb|EFI61298.1| excinuclease ABC subunit C [Comamonas testosteroni S44] Length = 650 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 209/642 (32%), Positives = 321/642 (50%), Gaps = 46/642 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PGVY+ D AG +LYVGKA NL++R+ SY ++ RI HM+S+I + TV + Sbjct: 16 LPPLPGVYRYFDAAGVLLYVGKAINLKRRVSSYFQKDHGGTRIGHMVSKIARLETTVVRS 75 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILIT------DKH------KIPALYKHRD 113 E EALLLE N+IK L P++NIL RDDKS+PY+ IT K + P + +R Sbjct: 76 EAEALLLENNLIKTLYPKYNILFRDDKSYPYLKITGVAHRDGKEGEPAFQEFPRIAYYRG 135 Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 + + YFGP+ S AV+++I LQ+ F LR+C D+VF +R+RPCLL+QIKRC+GPC Sbjct: 136 AVDKKHRYFGPYPSAWAVKESIQLLQKVFRLRTCEDTVFANRSRPCLLYQIKRCTGPCVD 195 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 IS E Y V A+ L G L +++ M + K ++E A R++L ALS + + Sbjct: 196 LISPEAYALDVRNAEAMLRGETSELLQQLEARMMAHSDKLEFEQAAEVRNQLTALSRVLH 255 Query: 234 HNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST--------- 281 D ++ AC+ G++ G +F ++ Sbjct: 256 QQAIETTDDKDVDILAVRVQGGRACVNLAMVRGGRHLGDRPYFPANLGDAASVYSSEEEV 315 Query: 282 ---------NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVP 332 +L F+ Q Y P +++S E+ + +Q G ++ + Sbjct: 316 DAAAEARPVEELVLEAFIAQHYVGVAVPPTLVVSHPVEKRLV--ELLTEQTGVRITVVQQ 373 Query: 333 KQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKR---IEIYDNSH 389 + ++R +E A NA + L+ E S Q + + LP IE +D SH Sbjct: 374 PREQRRIWLEMAQKNADIQLARLLAEEGSQQARTRALAEALDLPVENLDELTIECFDISH 433 Query: 390 IMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL 449 G S VV + + YR+FN+ + DD A MR VL RR+ + + + Sbjct: 434 TSGESTKASCVVFHHHKMQSSDYRRFNIEG--ITGGDDYAAMRQVLTRRYKPVAEAQREA 491 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 P PD+V++DGGKGQ+S A+ V +L ++ I+ + KG R G+E+ Sbjct: 492 GGAELT--GKQPHLPDLVLVDGGKGQVSMAREVFTELGLDLS-RIVGVEKGEGRKVGLEE 548 Query: 510 FFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--SPLDEINGIGPL 566 G + + L L + ++RDEAHRFAIT R R K S L++I G+GP Sbjct: 549 LVFADGRDKVYLGHDSAALMLVAQIRDEAHRFAITGMRAARAKVRTGSSSLEDIAGVGPK 608 Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LLQ FG V+ ++ +S + L ++EGIS +A +IY H Sbjct: 609 KRARLLQRFGGVRGVADASVDDLMTVEGISATLAEEIYKALH 650 >gi|262274270|ref|ZP_06052081.1| excinuclease ABC subunit C [Grimontia hollisae CIP 101886] gi|262220833|gb|EEY72147.1| excinuclease ABC subunit C [Grimontia hollisae CIP 101886] Length = 589 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 206/607 (33%), Positives = 332/607 (54%), Gaps = 31/607 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M+D +G ++YVGKA +L+KR+ SY +N + ++ I N+ T+T TE EAL+LE Sbjct: 1 MMDASGEIIYVGKAKSLKKRLSSYFRANVSGEKTRALVKNIANVEVTITHTETEALILEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N+IK+ PR+N+LLRDDKS+PYI ++ K P L HR + +G YFGPF AV ++ Sbjct: 61 NLIKQHLPRYNVLLRDDKSYPYIFLSAS-KHPRLSVHRGAKKRKGEYFGPFPDAGAVRQS 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHEAKKFLSG 193 + LQ+ F +R C DSV+ +RTRPCL++QIKRC+GPC I+ E+Y E V+ + FL G Sbjct: 120 LYLLQKIFPVRQCEDSVYANRTRPCLMYQIKRCAGPCVKGIITDEEYAELVNFTRLFLQG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDC---FSLYHN 250 + + + M A+ +E A +RD++ AL +Q + D + Sbjct: 180 KDRQVITTLVEKMESASQSLAFEKAAQYRDQIQALRRVQEQQFVSQDSDDDLDAIGVSIE 239 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLS 306 +ACI F G+ G+ ++F K +++ +++S F+ QFY P +IL+S Sbjct: 240 NGIACIHVLFLRQGKVLGSRSYFPKMPADTGVNELVSSFIGQFYIKQAEGNTIPSSILIS 299 Query: 307 EEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365 ++ EE L + + G KV + +G + + ++ A NA + T K++ +++ Sbjct: 300 QDLGEELHSLATALSEIAGRKVSVQCKPRGTRARFLKLAQTNAATALTSKINHKMTIHNR 359 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 + L + R+E +D SH MG V VV +G +K +YR++N+ + Sbjct: 360 FSVLSDTLDLEPVK-RMECFDISHTMGEQTVASCVVFNHDGPLKQEYRRYNI--TGITGG 416 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD A M VLERR+S+ + ++ PD++++DGGKGQL+ A V+K Sbjct: 417 DDYAAMAQVLERRYSKQVDPDK---------------IPDIILIDGGKGQLNRAWEVVKP 461 Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 L + ++ +AKG R G+E GE L P L+ IQ +RDE+H AI+ Sbjct: 462 LMADWPKHPLMLGVAKGTTRRPGLETLIKVSGEEFSLPSDSPALHLIQHIRDESHNHAIS 521 Query: 544 THRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR +R K S L+EI G+GP R++ LL+ G ++ + R+S E +A + GIS+ +A K Sbjct: 522 GHRAKRAKVRKSSVLEEIEGVGPKRRQALLKYLGGIQELKRASVEEIAKVPGISRVLAEK 581 Query: 603 IYNHFHK 609 I++ + Sbjct: 582 IHSSLQQ 588 >gi|220912579|ref|YP_002487888.1| excinuclease ABC subunit C [Arthrobacter chlorophenolicus A6] gi|254764920|sp|B8H7L9|UVRC_ARTCA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|219859457|gb|ACL39799.1| excinuclease ABC, C subunit [Arthrobacter chlorophenolicus A6] Length = 674 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 191/648 (29%), Positives = 310/648 (47%), Gaps = 54/648 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVT 63 ++P PGVY+ D GRV+YVGKA +L+ R+ SY + + M+ +++ +TV Sbjct: 13 EIPTNPGVYRFRDPHGRVIYVGKAKSLRSRLNSYFANPAGLLPKTYAMVHAASSVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E+E+L LE IK KPRFN++ RDDK++PY+ +T K P + R YFG Sbjct: 73 GSELESLQLEYTWIKEFKPRFNVVFRDDKTYPYLAVTLGEKYPRVQVMRGDKRKGTRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180 P+ A+ +T+++L R F +RSC+ VF+ RPCLL I +CS PC G IS E + Sbjct: 133 PYT-AGAIRETMDTLLRVFPVRSCSAGVFKRAESSGRPCLLGYIDKCSAPCVGRISPEDH 191 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + F+ G K+ + M A + DYE A RD + AL + N + Sbjct: 192 RALAEDFCAFMGGEAKRFTNKLEKQMAAAVARLDYEQAARIRDDITALRKVFERNAVVLA 251 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D F+L+ ++ A +Q G+ RG + ++ + T ++ + L+Q Y + Sbjct: 252 EDTDADVFALHEDELEAAVQVFHVRGGRIRGQRGWVVEKVEDFTTPDLVEHLLQQVYGED 311 Query: 298 -----PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 P +L+ L G +V + VP++G+K ++ NA + Sbjct: 312 GETHGRLPREVLVPVAPSNAEELTEWLSGIRGARVDVRVPQRGDKAALMSTVRENAEHAL 371 Query: 353 TQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 + L++ + LP RIE +D SH+ G + V MVVV + Sbjct: 372 KLHKTRRAGDLTVRSQALQELQEALDLPVPLLRIECFDVSHVQGTNVVASMVVVEDGLPK 431 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP--------------- 453 K+ YRKF++ DD A M VL RRF ++++ Sbjct: 432 KSDYRKFSITGP--AASDDTAAMHDVLTRRFRHYLQDKSAQVDEDVLEAGTAEAAAEAAA 489 Query: 454 -------------KKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500 + F P++V++DGG+ Q++AA L L +++ + ++ +AK Sbjct: 490 DAAAEAAVADTTTPIPKTKFAYPPNLVVVDGGQPQVNAAARALADLGIDD-VYVVGLAKR 548 Query: 501 PKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDE 559 + E + ++L LY +QR+RDEAHRFAI+ HR++R KA S LD Sbjct: 549 LE-----EVWLPDSDFPVILPRTSQGLYLLQRIRDEAHRFAISFHRQKRGKAMTVSALDG 603 Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + G+G +++ LL FG+VK + ++PE LA +GI +A I +HF Sbjct: 604 VPGLGASKRKALLAHFGSVKGVKAATPEELAQAKGIGPALAAAIVSHF 651 >gi|293606418|ref|ZP_06688777.1| excision endonuclease subunit UvrC [Achromobacter piechaudii ATCC 43553] gi|292815176|gb|EFF74298.1| excision endonuclease subunit UvrC [Achromobacter piechaudii ATCC 43553] Length = 609 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 212/614 (34%), Positives = 321/614 (52%), Gaps = 28/614 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+ LD AG V+YVGKA +L+KR+ SY N + RI M+S++ + TVT Sbjct: 13 DLPHLPGVYRHLDAAGEVMYVGKARDLKKRVSSYFQKNLASPRIAQMVSKVARLEVTVTR 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EAL+LE N+IK LKPR+NIL RDDKS+PY+LIT H+ P + +R ++ +G +FGP Sbjct: 73 SEAEALILENNLIKSLKPRYNILFRDDKSYPYLLIT-GHEWPRIAYYRGATNKRGQFFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F + AV +TI LQ+ F LR+C D+VF +R+RPCLL QI RCS PC G I +E+Y V Sbjct: 132 FPNAWAVRETIQILQKVFRLRTCEDTVFANRSRPCLLHQIGRCSAPCVGAIEAEEYQRDV 191 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 A +FL+G ++ +I M QA ++ +E A RD++ +L+ + + Sbjct: 192 QRAVRFLNGEAKDVMGEIETRMQQAAMELRFEEAAALRDQMGSLARVLHQQTMENTSGED 251 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D ++ C+ G++ G FF Q+L F+ Q YTD P Sbjct: 252 TDVIAVAIAGGKVCVNLAMVRGGRHLGDKPFFPTHAEGEAAPQVLEAFIAQHYTDNAMPP 311 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 ++ S + L+ + + G ++ QG +R +EQA NA + + L+ + Sbjct: 312 VLVCSHALPDPELINLLIEQAGGRPTRLLTRPQGARRSWLEQATKNAEMALARALTESGA 371 Query: 362 HQMILKDFTKKFALPHIPK-----RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + L RIE +D SH G + VV + + YR++N Sbjct: 372 RAARTLALAEALDLDTDEAALDALRIECFDISHTAGEATQASCVVFEHHDMQPSLYRRYN 431 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + DD A MR VL RRF+++ + P +V++DGGKGQ+ Sbjct: 432 I--AGITPGDDYAAMRQVLTRRFAKVADGD--------------APMPGLVLIDGGKGQV 475 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRD 535 A+ V +L ++ + T++ +AKG R G+E + L L I ++RD Sbjct: 476 EVARKVFVELGLDIQ-TLVGVAKGEGRKVGLETLVFADERPPVALGGESAALMLIAQVRD 534 Query: 536 EAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFAIT R RR K S L+EI G+G R++ LL FG ++ +S E LAS++G Sbjct: 535 EAHRFAITGMRARRAKTRNVSRLEEIEGVGARRRQRLLARFGGFSGVASASIEDLASVDG 594 Query: 595 ISKKIACKIYNHFH 608 IS+ +A +IY Sbjct: 595 ISQDLAERIYEALR 608 >gi|291550744|emb|CBL27006.1| excinuclease ABC, C subunit [Ruminococcus torques L2-14] Length = 617 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 201/619 (32%), Positives = 323/619 (52%), Gaps = 25/619 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M D +++YVGKA +L+ R++ Y S+ N +I M++ I + Sbjct: 11 ELKKLPGRPGVYLMHDETDQIIYVGKAISLKNRVRQYFQSSRNKGVKIEQMVTHIRRFEY 70 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK +P++N +L DDK++P+I +T + P + R + Sbjct: 71 IVTDSELEALVLECNLIKEHRPKYNTMLMDDKAYPFIKVTTGEEYPRVMLARQMKKDKAR 130 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV TI+ + + + +RSC S+ + + RPCL + IK+C PC G IS E Sbjct: 131 YFGPYTSSQAVRDTIDLIHKLYHIRSCNRSLPKDIGKERPCLNYHIKQCEAPCQGYISQE 190 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235 +Y + + E +FL+G + + + M A+ ++E AI +R+ L ++ + Sbjct: 191 EYRKSIDEVIRFLNGNFDMILKDLEDKMMAASEALEFEKAIEYRELLNSVKKVAQKQKIT 250 Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 DS D ++ A +Q F G+ G F+L+ E ++IL+ F++Q+Y Sbjct: 251 DSSGEDRDVMAVACQDEDAVVQVFFIRGGRLIGRDHFYLRISEEDKKSEILNSFIKQYYA 310 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351 P P ++L EE EE LLE + G KV I VPK+G K K++E A NA Sbjct: 311 GTPFLPGELMLPEEIEEQELLESWLSAKKGQKVTIRVPKKGTKEKLVELAEENARMVLSK 370 Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E +K+ L I R+E YD S+ G +VG MVV + +N Sbjct: 371 DKERLKREEGRTIGAVKEIASLLGLEQIV-RMEAYDISNTNGFESVGSMVVYEKGKPKRN 429 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YRKF + VK DD A MR VL RRF+ +K E + F ++PD++++D Sbjct: 430 DYRKFKIKS--VKGPDDYASMREVLTRRFTHGLKEREE-----NAEAGKFTTFPDLILMD 482 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GG+GQ++ A VL +L + I + + K + ++ I Sbjct: 483 GGRGQVNIALQVLDELKL--NIPVCGMVKDDNHRTRG---LYYNNVEIPIDRNSEAFKLI 537 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DEAHRFAI HR+ R K +S LD+I GIGP R++ L++ + ++ I ++ E L Sbjct: 538 TRIQDEAHRFAIEFHRQLRGKGQVHSVLDDIEGIGPARRKALMRHYLSLDAIRSATVEEL 597 Query: 590 ASIEGISKKIACKIYNHFH 608 A + +++K A +Y FH Sbjct: 598 AQLPSMNEKAAESVYQFFH 616 >gi|333027927|ref|ZP_08455991.1| putative excinuclease ABC subunit C [Streptomyces sp. Tu6071] gi|332747779|gb|EGJ78220.1| putative excinuclease ABC subunit C [Streptomyces sp. Tu6071] Length = 907 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 183/623 (29%), Positives = 304/623 (48%), Gaps = 38/623 (6%) Query: 23 LYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLK 81 +YVGKA +L++R+ +Y + R M++ ++ +TV TEVEAL LE + IK Sbjct: 2 IYVGKAKSLRQRLANYFQDLAHLHPRTRTMVTTAASVEWTVVSTEVEALQLEYSWIKEYD 61 Query: 82 PRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRT 141 PRFN+ RDDKS+PY+ +T + P R + YFGP+ A+ T++ L R Sbjct: 62 PRFNVKYRDDKSYPYLAVTMNEEFPRAQVMRGAKRKGVRYFGPYGHAWAIRDTVDLLLRV 121 Query: 142 FFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNL 198 F +R+C+ VF++ RPCLL I +CS PC G IS E + + + F++G + Sbjct: 122 FPVRTCSAGVFKNAARTGRPCLLGYIDKCSAPCVGRISPEDHRDLAEDFCHFMAGHTGHY 181 Query: 199 KEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRMDCFSLYHNKNLAC 255 ++ M +A +YE A RD + AL+ + + D +L ++ A Sbjct: 182 LRRLEERMTEAAEDMEYERAARLRDDIGALTRAMEKSAVVLADATDADLIALAQDELEAA 241 Query: 256 IQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK---PCPENILLSEEAEET 312 +Q G+ RG + T A ++ + L+Q Y ++ P+ +L+ E Sbjct: 242 VQIFHVRGGRVRGQRGWVTDKVEAVTTADLVEHALQQLYGEERGDAVPKEVLVPALPEPV 301 Query: 313 SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS----HQMILKD 368 ++ ++ G +V + VP++G+KR ++E NA +S + S L++ Sbjct: 302 QPVQEWLSERRGAQVSLRVPQRGDKRALMETVERNAQQSLALHKTKRASDLTTRSRALEE 361 Query: 369 FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDC 428 L +P RIE YD SH+ G V MVV + K++YR+F + + QDD Sbjct: 362 IAAALDLDGVPLRIECYDISHLQGDDVVASMVVFEDGLARKSEYRRFQIKG--FQGQDDV 419 Query: 429 AMMRMVLERRFSQLIKNE---------------ENLNFHPKKQEYSFPSWPDVVILDGGK 473 M V+ RRF + + E + F P ++++DGG+ Sbjct: 420 RSMHEVITRRFRRYLAERERTGEWTEEELDGPVEPGGLDEDGRPKRFAYPPQLLVVDGGQ 479 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 Q++AA+ L +L +++ + + +AK + E + + + +VL LY +QR+ Sbjct: 480 PQVAAARRALDELGIDD-VAVCGLAKRLE-----EVWVPGEEDPVVLPRSSEGLYLLQRV 533 Query: 534 RDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDEAHRFAIT R +R K PLDE+ G+G RK+ LL+ FG+VK + ++ E + + Sbjct: 534 RDEAHRFAITYQRSKRAKRFRAGPLDEVPGLGQTRKQALLKHFGSVKKLRAATIEQICEV 593 Query: 593 EGISKKIACKIYNHFHKNTSHTP 615 GI +K A I F ++ P Sbjct: 594 PGIGRKTAETILATFARSEPGAP 616 >gi|315498619|ref|YP_004087423.1| excinuclease abc, c subunit [Asticcacaulis excentricus CB 48] gi|315416631|gb|ADU13272.1| excinuclease ABC, C subunit [Asticcacaulis excentricus CB 48] Length = 639 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 264/610 (43%), Positives = 368/610 (60%), Gaps = 16/610 (2%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 + PGVY+M+ VLYVGKA +L+KRI Y H RI M+ ++ T TE Sbjct: 34 DKPGVYRMIGENDEVLYVGKAKSLKKRILQYAQGRVHAQRIARMVYLTRSMIIVRTQTEG 93 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EALLLEA +IK LKPR+N+LLRDDKSF IL+ H + KHR + IQG YFGPFAS Sbjct: 94 EALLLEARLIKALKPRYNVLLRDDKSFAEILVRKDHAAAQITKHRGAHAIQGEYFGPFAS 153 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 AV +T+++LQR F LR+C DSV+ RTRPC+L QI+RCS PCTGEIS E Y V +A Sbjct: 154 TQAVNRTLDTLQRAFLLRTCTDSVYASRTRPCMLHQIRRCSAPCTGEISLEDYAGLVGQA 213 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCF 245 + FL G + + + + + M A+ D+E A RDR+ AL+H+ + D F Sbjct: 214 EAFLKGRSRVVIDDLTKRMMNASDDMDFEKAAHLRDRVRALNHVSMTSSIGIGEAEADVF 273 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLK-----TDSESTNAQILSYFLRQFYTDKPCP 300 ++ AC+QT FF GQN G +F + D++S +IL FL QFY D+P P Sbjct: 274 AVVSEGGAACVQTIFFRAGQNWGDRAYFPRVPDSGEDADSAEGEILDAFLGQFYQDRPVP 333 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + IL+S E L+ + + G KV+I P++GEK + AL NA + ++++ + Sbjct: 334 KLILVSHPLSEPDLMMEALSLRAGRKVEIHCPRRGEKADAVAHALNNAKAALGRRMAEQS 393 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP- 419 + +LK + F L P RIE+YDNSH+ G AVG MVV G GF+K QYRKF + Sbjct: 394 AQSRLLKGVAEAFELAAPPNRIEVYDNSHLGGTHAVGGMVVAGPEGFMKGQYRKFTIRDL 453 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + + DD AMMR V RRF +L E+ PD+V++DGG+GQL A Sbjct: 454 DKMTAGDDYAMMREVFRRRFLRLKNRTESATEEEGFGR------PDLVLVDGGQGQLEAV 507 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 V+++L +E+ I I+ +AKGP R AGME+FF+ ++ + P+LY++QRLRDEAHR Sbjct: 508 LEVMRELGMED-IRIVGVAKGPDRDAGMERFFMPGRAPFMMEPKSPVLYYLQRLRDEAHR 566 Query: 540 FAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 +AI +R++R A +PLDEI GIGP +KR LL +FG+ + + R+ E L +EGIS+ Sbjct: 567 YAIGANRQKRDAAIIKNPLDEIEGIGPRKKRALLAAFGSGREVGRARIEDLRKVEGISEA 626 Query: 599 IACKIYNHFH 608 +A +IY FH Sbjct: 627 LAQRIYAFFH 636 >gi|167745943|ref|ZP_02418070.1| hypothetical protein ANACAC_00638 [Anaerostipes caccae DSM 14662] gi|167654458|gb|EDR98587.1| hypothetical protein ANACAC_00638 [Anaerostipes caccae DSM 14662] Length = 627 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 194/625 (31%), Positives = 318/625 (50%), Gaps = 21/625 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M + ++YVGKA L R++ Y + N T +I HM+S I + Sbjct: 7 ELKKLPAKPGVYIMHNDKDEIIYVGKAIKLCNRVRQYFQGSRNLTTKIQHMVSHIAYFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE N+IK +P++N +L+DDK++PYI +T + P + R + Sbjct: 67 IITDSELEALVLECNLIKEHRPKYNTMLKDDKNYPYIKVTTNEEYPRIMLARRMKQDKCK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV+ I L++ F +R+C+ + + + RPCL +QIK+C GPC IS E Sbjct: 127 YFGPYTSAGAVKDIIELLRKLFKIRTCSRKLPKDIGKDRPCLYYQIKQCEGPCQDYISGE 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y + + + FL+G ++ + + M QA ++E A +R+ L ++ I + Sbjct: 187 DYRKSIDQVLSFLNGNYKDVSDMLEEKMKQAAADLEFEQAAEYRNLLKSIGKIADRQKIN 246 Query: 239 ---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D + K A + F G+ G F + D E+T+ +++S F++QFY Sbjct: 247 SYGFENRDIIAFAKEKQDAVVAVFFIRDGKLLGREHFHMTQDEETTDEELMSAFVKQFYA 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HR 350 P P I L ++ ++E K+ G +V I +P +GEK +++E A NA + Sbjct: 307 GTPYLPGEIFLECGMDDMEIVEEWLSKKRGGRVHIRIPLRGEKHRLVELAKENASNVLRQ 366 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E +K+ + + R+E +D S+I G V MVV + K Sbjct: 367 DKEKLKREEKRTIGAVKEIEQLLGIK-GLHRMEAFDISNISGFQTVASMVVFEDGKARKR 425 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEY-SFPSWPDVVIL 469 YRKF L V DD M VL RR K E L + E+ SF +PD++++ Sbjct: 426 DYRKFRLKT--VDGPDDYRSMEEVLTRRLLHGQKEIEELKAKNEDLEFGSFTKFPDLLLM 483 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ++ AQ VLK L ++ I + + K + + R Sbjct: 484 DGGKGQVNVAQRVLKDLKMD--IPVCGMVKDDNHRTRA---LYYNNDEIYFPKRSEAFQL 538 Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 + R++DEAHRFAI HR R K S LDEI G+GP R++ L++ F ++ I ++ + Sbjct: 539 VTRIQDEAHRFAIEYHRSLRAKGQVSSVLDEIKGVGPKRRKALMKHFKQIQNIKEATEDE 598 Query: 589 LASIEGISKKIACKIYNHFHKNTSH 613 + + G+++K A +IY+ FH + Sbjct: 599 IMQVPGMTRKAAKEIYSFFHLSKEE 623 >gi|33593099|ref|NP_880743.1| putative excinuclease ABC subunit C [Bordetella pertussis Tohama I] gi|81424947|sp|Q7VWV7|UVRC_BORPE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|33563474|emb|CAE42359.1| putative excinuclease ABC subunit C [Bordetella pertussis Tohama I] gi|332382511|gb|AEE67358.1| excinuclease ABC subunit C [Bordetella pertussis CS] Length = 609 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 215/614 (35%), Positives = 328/614 (53%), Gaps = 28/614 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+ LD AG +YVGKA +L+KR+ SY N + RI M++++ ++ TVT Sbjct: 13 DLPHLPGVYRHLDAAGEAMYVGKARDLKKRVSSYFQKNLASPRIAQMVAKVASVDVTVTR 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L+PR+NIL RDDKS+PY+LIT H P + +R +++ +G YFGP Sbjct: 73 SEAEALLLENNLIKSLRPRYNILFRDDKSYPYLLIT-GHAWPRIAYYRGATSKRGQYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + + AV +TI LQ+ F LR+C D+VF +R+RPCLL QI RCS PC G I +E Y V Sbjct: 132 YPNSWAVRETIQILQKVFRLRTCEDTVFANRSRPCLLHQIGRCSAPCVGVIEAEDYAHDV 191 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNR 241 A +FL+G + ++I M QA+ + +E A + RD++ +LS + + + + Sbjct: 192 QRAVRFLNGEAREVMDEIEARMLQASTELRFEEAAVLRDQMGSLSKVLHQQTMENVGGDD 251 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D ++ C+ G++ G FF AQ+L F+ Q Y D P Sbjct: 252 TDVIAVASAGGKICVNLAMVRGGRHLGDKPFFPTHAEGEQPAQVLEAFVAQHYADGAMPP 311 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 ++ S ++ L+ + + ++ QG +R +EQA NA + + L+ + Sbjct: 312 VLVCSHALPDSGLVGLLAEQGGTRVARVLTRPQGVRRSWLEQAQKNAEMALARALTESGA 371 Query: 362 HQMILKDFTKKFALPHIPK-----RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + L + RIE +D SH G + VV + + YR++N Sbjct: 372 RAGRTLALAEALDLDTDEESLDALRIECFDISHTAGEATQASCVVFLHHDMQPSLYRRYN 431 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + DD A MR VL RRF ++ E P +V++DGGKGQ+ Sbjct: 432 IVG--ITPGDDYAAMRQVLTRRFGKVTDGE--------------APMPGLVLIDGGKGQV 475 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRD 535 A+ V +L ++ + +++ +AKG R G+E G + L L I ++RD Sbjct: 476 EVARQVFVELGLDIQ-SLVGVAKGEGRKVGLETLVFADGRPPVALGKESAALMLIAQVRD 534 Query: 536 EAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFAIT R RR K S L+EI GIG R++ LL FG + +S +S E LAS+EG Sbjct: 535 EAHRFAITGMRARRAKTRNVSRLEEIEGIGARRRQRLLARFGGLSGVSSASIEDLASVEG 594 Query: 595 ISKKIACKIYNHFH 608 IS+++A +IY+ H Sbjct: 595 ISQELAVRIYDALH 608 >gi|227504395|ref|ZP_03934444.1| excinuclease ABC subunit C [Corynebacterium striatum ATCC 6940] gi|227199043|gb|EEI79091.1| excinuclease ABC subunit C [Corynebacterium striatum ATCC 6940] Length = 683 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 186/676 (27%), Positives = 313/676 (46%), Gaps = 78/676 (11%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D RV+YVGKA NL+ R+ +Y R M+ ++ +TV Sbjct: 13 TIPTEPGVYKFRDENRRVIYVGKAKNLRARLSNYFQDITQLHPRTRQMVLTAASVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +EVEAL LE IKR PRFN++ RDDK++P + ++ +P + +R YFG Sbjct: 73 ASEVEALQLEYTWIKRFDPRFNVMYRDDKTYPMLAVSVGEAVPRAFFYRGPRRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ AV +T++ L R F +R+CA V+ RPCLL I +C PC G +S +++ Sbjct: 133 PYSHAWAVRETLDLLTRVFPMRTCAKGVYNRHERLGRPCLLGYIGKCDAPCIGRVSKDEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E V+E F++G + ++ + M +A ++E A RD L A++ I ++ Sbjct: 193 RETVNELVSFMNGNTSKVTRELTQRMEEAAENLEFELAARLRDDLGAINKIMEQQAVVFG 252 Query: 241 R---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ------------- 284 D + ++ A +Q G+ RG + ++ + + Sbjct: 253 DGTDADLIAFSSDELEAAVQIFHVRNGRIRGQRGWVVERSGDQAPLEPLEEGKPDPGLPA 312 Query: 285 ILSYFLRQFYTD-------------------------------KPCPENILLSEEAEETS 313 ++ FL QFY+D P IL+ +E + Sbjct: 313 LMQNFLIQFYSDAADRQKQELEEDAALNRRGVDQESHTEEHLGNVIPREILVQAMPDEAA 372 Query: 314 LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE----ISHQMILKDF 369 ++ + G V + VP++G+KR ++E NA Q + L+D Sbjct: 373 EVKSLLEQLRGAHVDLRVPQRGDKRSLMETVEKNAKEQLRQHKLKRVGDITARSAALQDI 432 Query: 370 TKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDC 428 + + P RIE D SHI G V +VV + K+ YR++ + + DD Sbjct: 433 QEALGMDQAPLRIECTDISHIQGTDVVASLVVFEDGLPRKSDYRRYRIKEAAGDGRSDDV 492 Query: 429 AMMRMVLERRFSQLIKN---------------EENLNFHPKKQEYSFPSWPDVVILDGGK 473 + V RRF + ++ +E + + F P + I+DGG Sbjct: 493 GSIAEVTRRRFKRHNEDKLANPDEEVEESTFADEKVTEESAEAGRRFAYPPQLFIVDGGA 552 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 Q++AAQ V +L + + +T++ +AK + E + E ++L L+ +Q++ Sbjct: 553 PQVAAAQEVFDELGIVD-VTLVGLAKRLE-----EIWVPGDDEPVILPRNSQALFLLQQI 606 Query: 534 RDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDEAHRFAIT HR++R K S LD + G+GP R+ L++ FG+VK + +S E +A++ Sbjct: 607 RDEAHRFAITYHRQQRSKRMRSSVLDSVPGLGPQRRTDLVKHFGSVKKLKEASVEQIAAV 666 Query: 593 EGISKKIACKIYNHFH 608 +G K+A ++ H H Sbjct: 667 KGFGPKLASVVFEHLH 682 >gi|317473372|ref|ZP_07932667.1| excinuclease ABC [Anaerostipes sp. 3_2_56FAA] gi|316899208|gb|EFV21227.1| excinuclease ABC [Anaerostipes sp. 3_2_56FAA] Length = 627 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 194/625 (31%), Positives = 318/625 (50%), Gaps = 21/625 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M + ++YVGKA L R++ Y + N T +I HM+S I + Sbjct: 7 ELKKLPAKPGVYIMHNDKDEIIYVGKAIKLCNRVRQYFQGSRNLTTKIQHMVSHIAYFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE N+IK +P++N +L+DDK++PYI +T + P + R + Sbjct: 67 IITDSELEALVLECNLIKEHRPKYNTMLKDDKNYPYIKVTTNEEYPRIMLARRMKQDKCR 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV+ I L++ F +R+C+ + + + RPCL +QIK+C GPC IS E Sbjct: 127 YFGPYTSAGAVKDIIELLRKLFKIRTCSRKLPKDIGKDRPCLYYQIKQCEGPCQDYISGE 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y + + + FL+G ++ + + M QA ++E A +R+ L ++ I + Sbjct: 187 DYRKSIDQVLSFLNGNYKDVSDMLEEKMKQAAADLEFEQAAEYRNLLKSIGKIADRQKIN 246 Query: 239 ---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D + K A + F G+ G F + D E+T+ +++S F++QFY Sbjct: 247 SYGFENRDIIAFAKEKQDAVVAVFFIRDGKLLGREHFHMTQDEETTDEELMSAFVKQFYA 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HR 350 P P I L ++ ++E K+ G +V I +P +GEK +++E A NA + Sbjct: 307 GTPYLPGEIFLECGMDDMEIVEEWLSKKRGGRVHIRIPLRGEKHRLVELAKENASNVLRQ 366 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E +K+ + + R+E +D S+I G V MVV + K Sbjct: 367 DKEKLKREEKRTIGAVKEIEQLLGIK-GLHRMEAFDISNISGFQTVASMVVFEDGKARKR 425 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEY-SFPSWPDVVIL 469 YRKF L V DD M VL RR K E L + E+ SF +PD++++ Sbjct: 426 DYRKFRLKT--VDGPDDYRSMEEVLTRRLLHGQKEIEELKAKNEDLEFGSFTKFPDLLLM 483 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ++ AQ VLK L ++ I + + K + + R Sbjct: 484 DGGKGQVNVAQRVLKDLKMD--IPVCGMVKDDNHRTRG---LYYNNDEIYFPKRSEAFQL 538 Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 + R++DEAHRFAI HR R K S LDEI G+GP R++ L++ F ++ I ++ + Sbjct: 539 VTRIQDEAHRFAIEYHRSLRAKGQVSSVLDEIKGVGPKRRKALMKHFKQIQNIKEATEDE 598 Query: 589 LASIEGISKKIACKIYNHFHKNTSH 613 + + G+++K A +IY+ FH + Sbjct: 599 IMQVPGMTRKAAKEIYSFFHLSKEE 623 >gi|239500955|ref|ZP_04660265.1| excinuclease ABC subunit C [Acinetobacter baumannii AB900] gi|260556323|ref|ZP_05828542.1| excinuclease ABC, C subunit [Acinetobacter baumannii ATCC 19606] gi|301345128|ref|ZP_07225869.1| excinuclease ABC subunit C [Acinetobacter baumannii AB056] gi|301510711|ref|ZP_07235948.1| excinuclease ABC subunit C [Acinetobacter baumannii AB058] gi|301594971|ref|ZP_07239979.1| excinuclease ABC subunit C [Acinetobacter baumannii AB059] gi|332854377|ref|ZP_08435329.1| excinuclease ABC, C subunit [Acinetobacter baumannii 6013150] gi|332867592|ref|ZP_08437740.1| excinuclease ABC, C subunit [Acinetobacter baumannii 6013113] gi|193076161|gb|ABO10776.2| EsvL [Acinetobacter baumannii ATCC 17978] gi|260410378|gb|EEX03677.1| excinuclease ABC, C subunit [Acinetobacter baumannii ATCC 19606] gi|332728053|gb|EGJ59444.1| excinuclease ABC, C subunit [Acinetobacter baumannii 6013150] gi|332733866|gb|EGJ65012.1| excinuclease ABC, C subunit [Acinetobacter baumannii 6013113] Length = 602 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 197/611 (32%), Positives = 312/611 (51%), Gaps = 32/611 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + + PGVY+ML G +LYVGKA NL+ R+ SY + ++++I +I VT Sbjct: 18 NLTQLPGVYKMLGKEGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVARIYDIETLVTR 77 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFG 123 +E EALLLE N+IK+ +P +NI+LRDDKS+ YI ++ P + R Q G +FG Sbjct: 78 SETEALLLEQNLIKQHRPPYNIMLRDDKSYVYIFVSADKPYPRIASGRGKGKHQIGKFFG 137 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ S + T+ LQ+ F +R C +S F R RPCL +QIKRCS PC G +S E Y E Sbjct: 138 PYPSAYSARDTLLVLQKLFNVRQCENSYFSQRKRPCLQYQIKRCSAPCVGLVSPEDYKED 197 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNR 241 V+ + +FL G L +++ M QA ++E A+ +RDRL+ L +Q Sbjct: 198 VNNSIRFLQGDTKELNQELIAKMEQAAADLEFEKAVFYRDRLSLLREVQAQQAVFKVKGE 257 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPC 299 D ++ + + C+Q G+ G ++F Q+LS F+ FY Sbjct: 258 ADILAIAYQAGVTCVQIMHVRNGRMLGGKSYFPDM-LGDDLGQMLSDFMANFYFQVADEV 316 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P ++++ + LE + +Q+G KV+I + + + +E A +N + +LS Sbjct: 317 PSELIVNTALPDRKELEEALAQQFGKKVQIKSSVRETRAEWLELAEMNVQHAIKGQLSNH 376 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + + P IE +D SH MG + + VV + G K YR+F + Sbjct: 377 LELNERFHQLEQVVGRPIDR--IECFDISHTMGEAPIASCVVFDQGGARKRDYRQFAIQD 434 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A MR L RR+ + + PD++++DGGKGQL A Sbjct: 435 --ITAGDDYAAMRQALTRRYKKAM-------------------LPDLLLIDGGKGQLHMA 473 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 V+++L +E ++ ++KG R G+E G + L L+ IQ++RDEAHR Sbjct: 474 MEVMQELGLEAF--MVGVSKGEGRKPGLETLHFTDGTKIQLPEDSKALHLIQQVRDEAHR 531 Query: 540 FAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAIT HR +R K+ + S L+ I G+GP R+R LL FG ++ + ++S + L + G+ + Sbjct: 532 FAITKHRAKRDKRRSTSVLEAIPGLGPKRRRDLLTHFGGIQGVLKASEKELTVVPGLGEV 591 Query: 599 IACKIYNHFHK 609 +A IY H+ Sbjct: 592 MARTIYKILHE 602 >gi|221067881|ref|ZP_03543986.1| excinuclease ABC, C subunit [Comamonas testosteroni KF-1] gi|220712904|gb|EED68272.1| excinuclease ABC, C subunit [Comamonas testosteroni KF-1] Length = 650 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 209/642 (32%), Positives = 320/642 (49%), Gaps = 46/642 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PGVY+ D AG +LYVGKA NL++R+ SY + RI HM+S+I + TV + Sbjct: 16 LPPLPGVYRYFDAAGVLLYVGKAINLKRRVSSYFQKEHGGTRIGHMVSKIVRLETTVVRS 75 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILIT------DKH------KIPALYKHRD 113 E EALLLE N+IK L P++NIL RDDKS+PY+ IT K + P + +R Sbjct: 76 EAEALLLENNLIKTLYPKYNILFRDDKSYPYLKITGVAHRDGKEGEPAFQEFPRIAYYRG 135 Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 + + YFGP+ S AV+++I LQ+ F LR+C D+VF +R+RPCLL+QIKRC+GPC Sbjct: 136 AVDKKHRYFGPYPSAWAVKESIQLLQKVFRLRTCEDTVFANRSRPCLLYQIKRCTGPCVD 195 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 IS E Y V A+ L G L +++ M + K ++E A R++L ALS + + Sbjct: 196 LISPEAYALDVRNAEAMLRGETSELLQQLEARMMAHSDKLEFEQAAEVRNQLTALSRVLH 255 Query: 234 HNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST--------- 281 D ++ AC+ G++ G +F ++ Sbjct: 256 QQAIETTDDKDVDILAVRVQGGRACVNLAMVRGGRHLGDRPYFPANLGDAASVYSSEEEV 315 Query: 282 ---------NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVP 332 +L F+ Q Y P +++S E+ + +Q G ++ + Sbjct: 316 DAAAEARPVEELVLEAFIAQHYVGVAVPPTLIVSHPVEKRLV--ELLTEQTGVRITVVQQ 373 Query: 333 KQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKR---IEIYDNSH 389 + ++R +E A NA + L+ E S Q + + LP IE +D SH Sbjct: 374 PREQRRIWLEMAQKNADIQLARLLAEEGSQQARTRALAEALDLPVENLDELTIECFDISH 433 Query: 390 IMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL 449 G S VV + + YR+FN+ + DD A MR VL RR+ + + + Sbjct: 434 TSGESTKASCVVFHHHKMQSSDYRRFNIEG--ITGGDDYAAMRQVLTRRYKPVAEAQREA 491 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 P PD+V++DGGKGQ+S A+ V +L ++ I+ + KG R G+E+ Sbjct: 492 GGAELT--GKQPHLPDLVLVDGGKGQVSMAREVFTELGLDLS-RIVGVEKGEGRKVGLEE 548 Query: 510 FFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--SPLDEINGIGPL 566 G + + L L + ++RDEAHRFAIT R R K S L++I G+GP Sbjct: 549 LVFADGRDKVYLGHDSAALMLVAQIRDEAHRFAITGMRAARAKVRTGSSSLEDIAGVGPK 608 Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LLQ FG V+ ++ +S + L ++EGIS +A +IY H Sbjct: 609 KRARLLQRFGGVRGVADASVDDLMTVEGISATLAEEIYKALH 650 >gi|238794053|ref|ZP_04637671.1| UvrABC system protein C [Yersinia intermedia ATCC 29909] gi|238726685|gb|EEQ18221.1| UvrABC system protein C [Yersinia intermedia ATCC 29909] Length = 588 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 208/606 (34%), Positives = 329/606 (54%), Gaps = 31/606 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D G V+YVGKA +L+KR+ SY + + + ++ I I TVT TE EALLLE Sbjct: 1 MYDKTGTVIYVGKAKDLKKRLTSYFRAQVASRKTETLVKNIAQIDVTVTHTETEALLLEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK +PR+N+LLRDDKS+P I ++ P L HR + +G YFGPF + AV +T Sbjct: 61 NYIKLYQPRYNVLLRDDKSYPLIFLS-ADTHPRLAIHRGAKHEKGEYFGPFPNSYAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193 + LQ+ F +R C +SV+R+R+RPCL +QI RCSGPC +S ++Y V + FLSG Sbjct: 120 LALLQKLFPVRQCENSVYRNRSRPCLQYQIGRCSGPCVAGLVSDDEYQRQVDYVRLFLSG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--DCFSLYHNK 251 + + ++ M +A+ +E A RD++ A+ + + D + + Sbjct: 180 KDQQVLTQLISRMEEASKLLHFEDAARIRDQIQAVRRVTEQQFVSGDSEDLDVIGVAFDA 239 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLSE 307 LAC+ F G+ G+ ++F K + + ++++ F+ QFY + P ILL Sbjct: 240 GLACVHVLFIRQGKVLGSRSYFPKVPAGTELSEVVQTFVGQFYLQGSQGRTLPGEILLDF 299 Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367 EE LL S + G K++I +G++ + ++ A NA + +LS + + +K Sbjct: 300 TLEEKDLLASSLSELAGRKIQIQSRPRGDRARYLKLARTNASTALITRLSQQSTIHQRMK 359 Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427 + K + R+E +D SH MG V VV NG V+++YR++N+ + + DD Sbjct: 360 ELAKILNID-EINRMECFDISHTMGEQTVASCVVFDANGPVRSEYRRYNI--SGITPGDD 416 Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487 A M VL+RR+ + + +++ PDV+ +DGGKGQLS A V L Sbjct: 417 YAAMSQVLKRRYGKALDDKK---------------IPDVIFIDGGKGQLSQAFDVFASLT 461 Query: 488 V---ENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 V + + ++ +AKG R AG+E F++ +GE L P L+ IQ +RD++H AIT Sbjct: 462 VPWDKQKPLLVGVAKGSDRKAGLETLFLEAQGEGFSLPPDSPALHLIQHIRDDSHNHAIT 521 Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR+RR K S L+ I G+GP R+++LL+ G ++ + +S E +A + IS+ +A K Sbjct: 522 GHRQRRSKVKNTSALETIEGVGPKRRQILLKYMGGLQPLLNASVEEIAKVPSISQALAEK 581 Query: 603 IYNHFH 608 IYN Sbjct: 582 IYNALK 587 >gi|193213289|ref|YP_001999242.1| excinuclease ABC subunit C [Chlorobaculum parvum NCIB 8327] gi|193086766|gb|ACF12042.1| excinuclease ABC, C subunit [Chlorobaculum parvum NCIB 8327] Length = 629 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 189/633 (29%), Positives = 300/633 (47%), Gaps = 48/633 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVT 63 +P PGVY+ + AG V+YVGKA NL+ R++SY +S + ++S I ++ +T Sbjct: 23 SLPTSPGVYRFSNAAGTVIYVGKARNLRNRVRSYFNSQGRQPGKTAVLVSHIADLNVIIT 82 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +EVEAL+LE N+IK LKPR+N+ L+DDKS+PY++IT+ + P ++ R YFG Sbjct: 83 SSEVEALILENNLIKELKPRYNVNLKDDKSYPYVVITN-ERFPRIFLTRQVRRDGSQYFG 141 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFR-----HRTRPCLLFQIKRCSGPCTGEISSE 178 P+ + ++ + F +RSC + + R CL + I +C GPC G S E Sbjct: 142 PYTEASQLRLILDLIGSIFPVRSCKYKLTEEAVAAGKYRVCLDYHIHKCKGPCEGLQSEE 201 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + E L G L + M Q + +E A + ++ L + Sbjct: 202 EYQAMIREIVTLLKGKTSALVRDLTAEMQQKAAELKFEEAATLKAQIEGLKRYAERQKVV 261 Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 N D F++ + AC G+ G+ +L + +L+ FL +Y Sbjct: 262 SNEPVDRDVFAIATGEEDACGVIFRIREGKLIGSRHTYLTNTGNTPLPNLLASFLEHYYL 321 Query: 296 DKP--CPENILLSEEAEETSLLEISFF----KQYGYKVKITVPKQGEKRKIIEQALINAH 349 + P P+ I L E E L + + +V+ TVP+ GEK ++I L NA Sbjct: 322 ETPDLIPQEIFLQAELPEEELEALRQLLASRQTGQRQVRFTVPRIGEKAQLIAMCLDNAE 381 Query: 350 RSHTQKLSTEI------SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVG 403 + + + L+ + L +P+RIE +DNSH G V MV Sbjct: 382 HHLHEFMVQKRLRGEMSRKSPALESLKQVLHLDKLPERIECFDNSHFQGTDYVSSMVTFV 441 Query: 404 ENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSW 463 K+ YRKF L + DD A M+ + RR+S + E Sbjct: 442 LGKPKKSDYRKFKLKS--FEGSDDYAAMQEAVTRRYSGTLAEE--------------LPM 485 Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMR 523 PD+V++DGGKGQ++ A L++L ++ + + +AK + E F + + L Sbjct: 486 PDLVLIDGGKGQVNVAWKALQELGID--VPVAGLAKRLE-----EIFVPNERDPYNLPKT 538 Query: 524 DPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMIS 582 P L +Q+LRDEAHRFAIT HRK R + + L I G+G LL FG+V+ ++ Sbjct: 539 SPALKLLQQLRDEAHRFAITYHRKLRSDRTIRTELTGIKGVGEKSAEKLLSRFGSVETVA 598 Query: 583 RSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615 ++S E L+ + G +K A IY +F + + P Sbjct: 599 KASIEELSEVTG--RKTAESIYRYFRQQDADQP 629 >gi|163841016|ref|YP_001625421.1| excinuclease ABC subunit C [Renibacterium salmoninarum ATCC 33209] gi|189038078|sp|A9WT69|UVRC_RENSM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|162954492|gb|ABY24007.1| excinuclease ABC subunit C [Renibacterium salmoninarum ATCC 33209] Length = 655 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 186/644 (28%), Positives = 321/644 (49%), Gaps = 40/644 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 + ++P PGVY+ D GRV+YVGKA NL+ R+ SY + + M+ ++++ Sbjct: 10 KTGEIPTDPGVYRFRDEHGRVIYVGKAKNLRSRLTSYFANPVTLLPKTFAMVHTATSVQW 69 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T+ +E+EAL LE IK PR+N+ RDDKS+PY+ +T + P + R Sbjct: 70 TIVGSELEALQLEYTWIKEFAPRYNLAFRDDKSYPYLAVTMGEEFPRVQVMRGERRKGTR 129 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISS 177 YFGPF A+ +T+++L R F +R+C+ S F+ RPCLL I +C+ PC G +S+ Sbjct: 130 YFGPFT-AGAIRETVDTLLRVFPVRTCSPSTFKRAQQSGRPCLLGYIDKCAVPCVGRVSA 188 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E++ E F+ G + + M +A + DYE A RD + AL + N Sbjct: 189 EEHRTLADEFCAFMGGEAKRFIGTLEKQMAEAVAELDYERAARLRDDVIALRKVFERNAV 248 Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D F+++ ++ A +Q G+ RG + ++ + A+++ + L+Q Y Sbjct: 249 VLAEDTSADIFAVHQDELEAAVQVFNVRSGRIRGQRGWVVEKVEDLVPAELIEHLLQQVY 308 Query: 295 TDK-----PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH 349 D+ P IL+ E L G KV+I VP++G+K ++E +NA Sbjct: 309 GDERADEDRIPRQILVPELPANVEQLTEWLSGLRGAKVEIKVPQRGDKAALMETVALNAE 368 Query: 350 RSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405 ++ S + L++ LP RIE YD SH+ G + V MVVV + Sbjct: 369 QAMKLHKSKRAGDLTQRSLALRELQDALDLPLPLLRIECYDISHVQGTNVVASMVVVEDG 428 Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL-------------NFH 452 K++YR+F++ + +DD A M V+ RRF ++ +++ + Sbjct: 429 IAKKSEYRRFSITGD--AARDDTASMYDVITRRFRNYLQEQQDRAEALTRPVEFEISDAA 486 Query: 453 PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV 512 + F P++V++DGG Q++A L L + + + +I +AK + E + Sbjct: 487 ETAPKSKFAYPPNLVVVDGGPPQVAATSRALADLGITD-VAVIGLAKRLE-----EVWLP 540 Query: 513 KKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLL 571 + ++L LY +QR+RDEAHRFAI+ HR++R K+ S LD + G+G +++ L Sbjct: 541 EDDFPVILPRTSQGLYLLQRIRDEAHRFAISFHRQKRGKSMTASLLDGVPGLGESKQKAL 600 Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615 L+ FG+VK + + ++ ++GI +A + + ++ P Sbjct: 601 LKHFGSVKKLQSADVSQISEVKGIGPVLAEAVRSAL-ESVDAQP 643 >gi|288549792|ref|ZP_05968169.2| excinuclease ABC subunit C [Enterobacter cancerogenus ATCC 35316] gi|288317401|gb|EFC56339.1| excinuclease ABC subunit C [Enterobacter cancerogenus ATCC 35316] Length = 588 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 212/606 (34%), Positives = 332/606 (54%), Gaps = 31/606 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D G V+YVGKA +L+KR+ SY SN + + +++ I+NI TVT TE EALLLE Sbjct: 1 MYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVALIHNIDVTVTHTETEALLLEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YFGPF + AV +T Sbjct: 61 NYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193 + LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y + V + FL+G Sbjct: 120 LALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLAG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NRMDCFSLYHNK 251 + + ++ M +A+ ++E A RD++ A+ + + +D + ++ Sbjct: 180 KDDQVLTQLIARMEKASGALEFEEAGRIRDQIQAVRRVTEKQFVSNTGDDLDVIGVAYDA 239 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSE 307 LAC+ F G+ G+ ++F K + +++ F+ QFY + P ILL Sbjct: 240 GLACVHVLFIRQGKVLGSRSYFPKVPGGTEMGEVVETFVGQFYLQGSQMRTLPSEILLDF 299 Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367 ++ +LL S G +V + +G++ + ++ A NA + T KLS + + L Sbjct: 300 NLDDKTLLSESLSSLAGRRVNVQTRPRGDRARYLKLARTNAATALTTKLSQQSTVHQRLT 359 Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427 + LP I R+E +D SH MG V VV NG ++ +YR++N+ + DD Sbjct: 360 ALATQLKLPEIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNI--TGITPGDD 416 Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487 A M VL RR+ + I+ + PDV+++DGGKGQL A+ V + L+ Sbjct: 417 YAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQLGQAKAVFESLD 461 Query: 488 VE---NRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 VE N ++ +AKG R AG+E F +GE L P L+ IQ +RDE+H AI+ Sbjct: 462 VEWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIS 521 Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A + GIS+ +A K Sbjct: 522 GHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLLNASMEEIAKVPGISQGLAEK 581 Query: 603 IYNHFH 608 IY Sbjct: 582 IYYSLK 587 >gi|311107558|ref|YP_003980411.1| excinuclease ABC subunit C [Achromobacter xylosoxidans A8] gi|310762247|gb|ADP17696.1| excinuclease ABC, C subunit [Achromobacter xylosoxidans A8] Length = 608 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 215/614 (35%), Positives = 319/614 (51%), Gaps = 28/614 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+ LD AG V+YVGKA +L+KR+ SY N + RI M++++ + TVT Sbjct: 13 DLPHLPGVYRHLDAAGEVMYVGKARDLKKRVSSYFQKNLASPRIAQMVAKVARLEVTVTR 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EAL+LE N+IK LKPR+NIL RDDKS+PY+LIT H P + +R ++ +G YFGP Sbjct: 73 SEAEALILENNLIKTLKPRYNILFRDDKSYPYLLIT-GHDWPRIAYYRGATNKRGQYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F + AV +TI LQ+ F LR+C DSVF +R+RPCLL QI RCS PC G I + Y V Sbjct: 132 FPNAWAVRETIQILQKVFRLRTCEDSVFANRSRPCLLHQIGRCSAPCVGAIEAADYERDV 191 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNR 241 A +FL+G ++ +I M QA + +E A RD++ +L+ + + + Sbjct: 192 QRAVRFLNGEAKDVMGEIENRMQQAASELRFEEAAALRDQMGSLARVLHQQTMENVSGED 251 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D ++ C+ G++ G FF Q+L F+ Q YTD P Sbjct: 252 TDIIAVAIAGGKVCVNLAMVRGGRHLGDKPFFPSHAEGEAAPQVLEAFVAQHYTDNAMPP 311 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 ++ S + L+ + + G ++ QG +R +EQA NA + + L+ + Sbjct: 312 VLVCSHALPDPDLIGLLVEQAGGRPSRVLTRPQGARRAWLEQATKNAEMALARALTESGA 371 Query: 362 HQMILKDFTKKFALPHIPK-----RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + L RIE +D SH G + VV + + YR++N Sbjct: 372 RAARTLALAEALDLDTDEAALDALRIECFDISHTAGEATQASCVVFEHHDMQPSLYRRYN 431 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + DD A MR VL RRF+++ E P +V++DGGKGQ+ Sbjct: 432 I--GGITPGDDYAAMRQVLSRRFAKVADGE--------------APMPGLVLIDGGKGQV 475 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRD 535 A+ V +L ++ + T++ +AKG R G+E + L L I ++RD Sbjct: 476 EVARQVFVELGLDVQ-TLVGVAKGEGRKVGLETLVFADSRPPVALGGESAALMLIAQVRD 534 Query: 536 EAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFAIT R RR KA S L+EI GIG R++ LL FG ++ +S E LAS++G Sbjct: 535 EAHRFAITGMRARRAKARNVSRLEEIEGIGARRRQRLLARFGGFSGVASASIEDLASVDG 594 Query: 595 ISKKIACKIYNHFH 608 IS+ +A +IY Sbjct: 595 ISQDLAIRIYEALR 608 >gi|290961316|ref|YP_003492498.1| ABC excision nuclease subunit C [Streptomyces scabiei 87.22] gi|260650842|emb|CBG73959.1| ABC excision nuclease subunit C [Streptomyces scabiei 87.22] Length = 676 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 185/630 (29%), Positives = 304/630 (48%), Gaps = 45/630 (7%) Query: 13 YQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTCTEVEALL 71 Y+ D RV+YVGKA +L++R+ +Y R M++ ++ +TV TEVEAL Sbjct: 2 YKFRDEHRRVIYVGKAKSLRQRLANYFQDLTGLHPRTRTMVTTAASVEWTVVSTEVEALQ 61 Query: 72 LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAV 131 LE + IK PRFN+ RDDKS+PY+ +T + P + R YFGP+A A+ Sbjct: 62 LEYSWIKEFDPRFNVKYRDDKSYPYLAVTMNEQYPRVQVMRGHKKKGVRYFGPYAHAWAI 121 Query: 132 EKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 T++ L R F +R+C+ VF++ RPCLL I +CS PC IS+E + E E Sbjct: 122 RDTVDLLLRVFPVRTCSAGVFKNAARTGRPCLLGYIGKCSAPCVERISAEDHRELADEFS 181 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRMDCF 245 F++G ++ + M A + +YE A RD + AL N + D Sbjct: 182 DFMAGRTGTYIRRLEKRMTDAAEEMEYERAARLRDDIEALKKAMEKNAVVLADATDADLI 241 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP---CPEN 302 +L ++ A +Q G+ RG + T ++ + L+Q Y ++ P+ Sbjct: 242 ALAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEAVTTGDLVEHALQQLYGEETGDAVPKE 301 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS- 361 +L+ + ++ ++ G +V + VP++G+K+ ++E NA +S + S Sbjct: 302 VLVPALPDPVGPVQEWLTERRGAQVSLRVPQRGDKKALMETVERNAQQSLVLHKTRRASD 361 Query: 362 ---HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 L++ + L P RIE YD SH+ G V MVV + K++YR+F + Sbjct: 362 LTTRSRALEEIAEALDLDSAPLRIECYDISHLQGDDVVASMVVFEDGLARKSEYRRFQIK 421 Query: 419 PN-------DVKTQDDCAMMRMVLERRFSQLIKNEENLNF-----------------HPK 454 + QDD M V+ RRF + + +E Sbjct: 422 GRVGDTQVWHGEGQDDVRSMHEVIARRFRRYLAEKEKTGEWVEEDAAGAEGPAGGLKDDD 481 Query: 455 KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK 514 + F P +V++DGG+ Q++AA+ L +L +++ I + +AK + E + Sbjct: 482 GRPRRFAYPPQLVVVDGGQPQVAAARRALDELGIDD-IAVCGLAKRLE-----EVWVPGD 535 Query: 515 GEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQ 573 + +VL LY +QR+RDEAHRFAIT R +R K SPLD++ G+G RK+ LL+ Sbjct: 536 DDPVVLPRSSEGLYLLQRVRDEAHRFAITYQRTKRAKRFRASPLDDVPGLGEARKQALLK 595 Query: 574 SFGTVKMISRSSPETLASIEGISKKIACKI 603 FG++K + ++ + + + GI +K A I Sbjct: 596 HFGSLKKLRSATIDQICEVPGIGRKTAETI 625 >gi|299822581|ref|ZP_07054467.1| excision endonuclease subunit UvrC [Listeria grayi DSM 20601] gi|299816110|gb|EFI83348.1| excision endonuclease subunit UvrC [Listeria grayi DSM 20601] Length = 611 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 180/618 (29%), Positives = 298/618 (48%), Gaps = 45/618 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY H + ++ +I + + VT + Sbjct: 26 LPDQPGCYLMKDDQGTIIYVGKAKVLKNRVRSYFTGT-HDGKTQRLVQEIADFEYIVTSS 84 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 VEALLLE N+IK+ PRFNI L+DDK++P+I IT+ + P L R +G YFGP+ Sbjct: 85 NVEALLLEINLIKKHDPRFNIRLKDDKTYPFIKITN-ERHPRLIITRQVKKDKGKYFGPY 143 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A + L R + LR C + CL + + +C PC E+ KY + Sbjct: 144 PNVYAANEVKKILDRLYPLRKCNTLP----NKVCLYYHLGQCLAPCVFEVDEAKYRQMED 199 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E FL+GG +K+++ M QA ++E A +RD++ A+ Sbjct: 200 EIVSFLNGGYKKVKQELNTKMAQAAENMEFEKAGEYRDQINAIETTMEKQKMTVTDFVDR 259 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +++ + + P+ Sbjct: 260 DVFGYAIDKGWMCVQVFFIRQGKLIEREASQFPFYNDADEDFLTFIGQFYQKANHIPPKE 319 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358 I L ++ ++ ++ + K+ VPK+G K+++++ A NA + +K Sbjct: 320 IYLPDDVDDEAIQAVVPE------TKVLVPKRGNKKELVKLAYKNAKIALNEKFSLLERN 373 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E ++ + +P RIE +DNS+I G V MV + KN YRK+ + Sbjct: 374 EERTVGAVERLGEAMGIPTPS-RIEAFDNSNIQGTDPVSAMVTFIDGKPSKNDYRKYKIK 432 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V DD MR V+ RR+ +++K PD++++DGGKGQ+ + Sbjct: 433 T--VAGPDDYGTMREVVRRRYWRVLKEG--------------LPLPDLILIDGGKGQIES 476 Query: 479 AQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ + + +L ++ I + +AK + F + E + L Y +QR++DE Sbjct: 477 ARDILVNELGLD--IPVAGLAKDDRHRTSQ-LLFGEPLEIIPLERNSESFYLLQRIQDEV 533 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R K+ S LD I G+GP RK+ LLQ FG++K I +S E L + G+ Sbjct: 534 HRFAITFHRQLRSKSGFQSVLDGIPGVGPGRKKTLLQHFGSMKKIKAASVEELKAA-GVP 592 Query: 597 KKIACKIY---NHFHKNT 611 + +A + + +K + Sbjct: 593 QAVAEAVKAKVDSLNKKS 610 >gi|269956343|ref|YP_003326132.1| excinuclease ABC subunit C [Xylanimonas cellulosilytica DSM 15894] gi|269305024|gb|ACZ30574.1| excinuclease ABC, C subunit [Xylanimonas cellulosilytica DSM 15894] Length = 659 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 192/625 (30%), Positives = 302/625 (48%), Gaps = 36/625 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 ++P PGVY+ D GRV+YVGKA NL+ R+ +Y N R M++ ++ +TV Sbjct: 13 EIPTSPGVYRFRDPHGRVIYVGKAKNLRSRLSNYFQDLANLHSRTQTMVTTAASVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE + IK+ PRFN+ RDDKS+P++ +T P R + YFG Sbjct: 73 GTEVEALALEYSWIKQFDPRFNVKYRDDKSYPFLAVTMADDFPRAQVMRGAKRPGTRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180 P+ A+ +T++ L R F +R+C+ VF+ RPCLL I +CS PC G IS + Sbjct: 133 PYGHAWAIRETLDLLLRVFPIRTCSAGVFKRAAQSGRPCLLGYIDKCSAPCVGRISPADH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + F++G +I + M A +YE A RD + AL N + Sbjct: 193 KALAEDFCAFMAGDTQRFVRRIEKQMRDAAANMEYEQAARLRDDVQALQRALEKNAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294 D F+L ++ A +Q G+ RG + ++ + T+ +++ + L+Q Y Sbjct: 253 DATDADIFALVGDELEAAVQVFHVRGGRVRGQRGWVVEKVEDITDGELVEHLLQQVYGGD 312 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 + P +L+ + + G +V + VP++G+KR++ E NA + Sbjct: 313 AEASVPREVLVPVLPPDPQQVTAWLAGLRGSRVDVRVPQRGDKRELAETVRKNAEHALML 372 Query: 355 KLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + + L++ + L P RIE YD SH G MVV + K Sbjct: 373 HRTRRAGDLTTRSQALRELQEALDLDTAPLRIECYDVSHTQGTYQSASMVVFEDGLPRKG 432 Query: 411 QYRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKN--------------EENLNFHPKK 455 +YR F++ + +DD A M V+ RRF + + + E + P + Sbjct: 433 EYRSFSIRGPEGDGARDDTAAMYEVITRRFRRYLADRARSGELELDLESGEVDPQEEPAE 492 Query: 456 QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG 515 + F P++V++DGG Q++AAQ L L V + + + +AK + E + Sbjct: 493 TKKRFAYPPNLVVVDGGPPQVAAAQRALDDLGVTD-VALCGLAKRLE-----EVWVAHDD 546 Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQS 574 ++L LY +QR RDEAHRFAIT HRKRR K S LD + G+GP R++ LL Sbjct: 547 YPVILERSSEGLYLLQRARDEAHRFAITQHRKRRSKGMTVSALDGVPGLGPARQKALLTH 606 Query: 575 FGTVKMISRSSPETLASIEGISKKI 599 FG+VK + +S E +AS+ G+ Sbjct: 607 FGSVKRLRAASVEEIASVRGMGTTT 631 >gi|210615348|ref|ZP_03290512.1| hypothetical protein CLONEX_02728 [Clostridium nexile DSM 1787] gi|210150375|gb|EEA81384.1| hypothetical protein CLONEX_02728 [Clostridium nexile DSM 1787] Length = 612 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 207/619 (33%), Positives = 330/619 (53%), Gaps = 25/619 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M D ++YVGKA +L+ R++ Y ++ N +I M++ I + Sbjct: 7 ELKKLPAKPGVYLMHDEKDHIIYVGKAISLKNRVRQYFQTSRNKGAKIEQMVTHIRRFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK +P++N +L DDK +P+I +T P + R + Sbjct: 67 IVTDSELEALVLECNLIKEHRPKYNTMLMDDKGYPFIKVTVNEPFPRIMMARTMKKDKAK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV+ TI +++ + +RSC ++ + + RPCL + IK+C PC G IS E Sbjct: 127 YFGPYTSAGAVKDTIELIRKLYHIRSCNRNLPKDIGKDRPCLNYHIKQCKAPCQGYISEE 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235 +Y E +HE +FL+G + + + M +A+ K ++E AI +R+ L ++ I Sbjct: 187 QYRESIHEVIRFLNGHYDVILKDLEEKMLEASEKMEFEKAIEYRELLGSVKKIAQKQKIT 246 Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 DS D ++ + A +Q F G+ G FFL+ SE + QIL F++QFY Sbjct: 247 DSSGEDRDILAVAKDAEDAVVQVFFIRGGRLIGRDHFFLRNSSEESKGQILESFIKQFYA 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351 P P +++ EE EE +LE K+ ++V I VPK+GEK K++E A NA Sbjct: 307 GTPFIPAELMIQEELEEREILEEWLSKKREHRVHIRVPKKGEKEKLVELARKNAALVLNT 366 Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E +K+ K L I R+E +D S+ G ++VG MVV + +N Sbjct: 367 DKERLKREEGRTIGAVKEIEKLLDLSGIV-RMEAFDISNTNGFASVGSMVVYEKGKPKRN 425 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YRKF + V+ DD A M VL RRF +K ++ K+ SF +PD++++D Sbjct: 426 DYRKFKIKG--VQGADDYASMEEVLTRRFEHGLKERQD-----GKELGSFHVFPDLIMMD 478 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ++ A VL KL++ +I + + K + ++ I Sbjct: 479 GGKGQVNVALAVLDKLHL--QIPVCGMVKDDNHRTRG---LYYNNIEIPIDRNSEGFKLI 533 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DEAHRFAI HRK R + +S LD+I GIG R++ L++ F + I +S E L Sbjct: 534 TRIQDEAHRFAIEFHRKLRSQGQVHSILDDIPGIGQARRKALMKHFMNLDAIKNASVEEL 593 Query: 590 ASIEGISKKIACKIYNHFH 608 ++ +++K A +YN FH Sbjct: 594 KNLPSMNEKSAKDVYNFFH 612 >gi|78044731|ref|YP_359139.1| excinuclease ABC subunit C [Carboxydothermus hydrogenoformans Z-2901] gi|90111061|sp|Q3AFE5|UVRC_CARHZ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|77996846|gb|ABB15745.1| excinuclease ABC, C subunit [Carboxydothermus hydrogenoformans Z-2901] Length = 607 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 206/614 (33%), Positives = 318/614 (51%), Gaps = 23/614 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRF 60 + +P+ PGVY D G V+YVGKA NL+ R++SY + M+ + +I Sbjct: 6 KVKNLPDSPGVYLYKDEKGEVIYVGKAKNLKNRVRSYFQPPEKLLPKTRVMMEKARDIEV 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T TEVEAL+LE N+IKR +PR+NILL+DDKS+PY+ IT + P L R G Sbjct: 66 IITSTEVEALILEQNLIKRYRPRYNILLKDDKSYPYLKIT-GEEFPRLLITRRVVNDGGR 124 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGP+ A+ +T L+ F R+C ++F + RPCL F IK+CS PC GEIS E+Y Sbjct: 125 YFGPYPDAGALNETYKLLRSIFKFRTCTPTIFAQKKRPCLNFHIKKCSAPCAGEISREEY 184 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + + FL G NL +K+ + M A+ ++E A RD++ AL I Sbjct: 185 FKEIEMVVDFLEGRGENLIKKLKKEMAIASDNLEFERAAKLRDQILALEKILAKQKISRG 244 Query: 241 RM--DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 + D + + +NL G G + + E+ + + + K Sbjct: 245 QRNADVVVVANRENLGVGLIFVIRQGNLLGQKVYTFTGEMETGEL-LNQVLVTHYGEAKE 303 Query: 299 CPENILLSEEAEETSLLEISFFK-QYGYKVKITVPKQGEKRKIIEQALINA----HRSHT 353 P I+LS S+F+ ++G K K TVPK+GEK ++++ AL N Sbjct: 304 VPVEIILSTRENLDEEFLNSWFELKFGKKPKFTVPKRGEKFELLKMALENVNFTLDEKIK 363 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 ++ ++ L D + LP +P+RIE YD SH+ G V MVV + VK +YR Sbjct: 364 LNEKKQLLNEKALMDLKEALNLPVVPRRIEGYDISHLAGTGTVASMVVFIDGEPVKGKYR 423 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 +F + DD M + RRF + + +E + SF PD+V++DGGK Sbjct: 424 RFAIRSA---ANDDYTAMFEAVLRRFKKYLALQEE-----GGADGSFEELPDLVLIDGGK 475 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 GQL+AA LK+ N+ + T+I++AK + E F K ++L+L L +QR+ Sbjct: 476 GQLNAAMDALKETNLLGKFTVIALAKEQE-----EIFLPGKKDSLLLTQDREGLKLLQRV 530 Query: 534 RDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 RDEAHRFA K+R K S L+++ GIGP R++ LL FG++K + ++ E + ++ Sbjct: 531 RDEAHRFARGYQEKKRVKTLASLLEQVEGIGPKRRKQLLNKFGSIKNLREATVEEITAVP 590 Query: 594 GISKKIACKIYNHF 607 GI+++IA ++ Sbjct: 591 GITREIAERLKELL 604 >gi|169797431|ref|YP_001715224.1| excinuclease ABC subunit C [Acinetobacter baumannii AYE] gi|229557973|sp|B0VE41|UVRC_ACIBY RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|169150358|emb|CAM88255.1| excinuclease ABC subunit C; UvrC with UvrAB is a DNA excision repair enzyme [Acinetobacter baumannii AYE] Length = 599 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 197/611 (32%), Positives = 312/611 (51%), Gaps = 32/611 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + + PGVY+ML G +LYVGKA NL+ R+ SY + ++++I +I VT Sbjct: 15 NLTQLPGVYKMLGKEGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVARIYDIETLVTR 74 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFG 123 +E EALLLE N+IK+ +P +NI+LRDDKS+ YI ++ P + R Q G +FG Sbjct: 75 SETEALLLEQNLIKQHRPPYNIMLRDDKSYVYIFVSADKPYPRIASGRGKGKHQIGKFFG 134 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ S + T+ LQ+ F +R C +S F R RPCL +QIKRCS PC G +S E Y E Sbjct: 135 PYPSAYSARDTLLVLQKLFNVRQCENSYFSQRKRPCLQYQIKRCSAPCVGLVSPEDYKED 194 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNR 241 V+ + +FL G L +++ M QA ++E A+ +RDRL+ L +Q Sbjct: 195 VNNSIRFLQGDTKELNQELIAKMEQAAADLEFEKAVFYRDRLSLLREVQAQQAVFKVKGE 254 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPC 299 D ++ + + C+Q G+ G ++F Q+LS F+ FY Sbjct: 255 ADILAIAYQAGVTCVQIMHVRNGRMLGGKSYFPDM-LGDDLGQMLSDFMANFYFQVADEV 313 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P ++++ + LE + +Q+G KV+I + + + +E A +N + +LS Sbjct: 314 PSELIVNTALPDRKELEEALAQQFGKKVQIKSSVRETRAEWLELAEMNVQHAIKGQLSNH 373 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + + P IE +D SH MG + + VV + G K YR+F + Sbjct: 374 LELNERFHQLEQVVGRPIDR--IECFDISHTMGEAPIASCVVFDQGGARKRDYRQFAIQD 431 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A MR L RR+ + + PD++++DGGKGQL A Sbjct: 432 --ITAGDDYAAMRQALTRRYKKAM-------------------LPDLLLIDGGKGQLHMA 470 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 V+++L +E ++ ++KG R G+E G + L L+ IQ++RDEAHR Sbjct: 471 MEVMQELGLEAF--MVGVSKGEGRKPGLETLHFTDGTKIQLPEDSKALHLIQQVRDEAHR 528 Query: 540 FAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAIT HR +R K+ + S L+ I G+GP R+R LL FG ++ + ++S + L + G+ + Sbjct: 529 FAITKHRAKRDKRRSTSVLEAIPGLGPKRRRDLLTHFGGIQGVLKASEKELTVVPGLGEV 588 Query: 599 IACKIYNHFHK 609 +A IY H+ Sbjct: 589 MARTIYKILHE 599 >gi|184156646|ref|YP_001844985.1| excinuclease ABC subunit C [Acinetobacter baumannii ACICU] gi|332873053|ref|ZP_08441010.1| excinuclease ABC, C subunit [Acinetobacter baumannii 6014059] gi|183208240|gb|ACC55638.1| Nuclease subunit of the excinuclease complex [Acinetobacter baumannii ACICU] gi|332738565|gb|EGJ69435.1| excinuclease ABC, C subunit [Acinetobacter baumannii 6014059] Length = 602 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 197/611 (32%), Positives = 312/611 (51%), Gaps = 32/611 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + + PGVY+ML G +LYVGKA NL+ R+ SY + ++++I +I VT Sbjct: 18 NLTQLPGVYKMLGKEGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVARIYDIETLVTR 77 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFG 123 +E EALLLE N+IK+ +P +NI+LRDDKS+ YI ++ P + R Q G +FG Sbjct: 78 SETEALLLEQNLIKQHRPPYNIMLRDDKSYVYIFVSADKPYPRIASGRGKGKHQIGKFFG 137 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ S + T+ LQ+ F +R C +S F R RPCL +QIKRCS PC G +S E Y E Sbjct: 138 PYPSAYSARDTLLVLQKLFNVRQCENSYFSQRKRPCLQYQIKRCSAPCVGLVSPEDYKED 197 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNR 241 V+ + +FL G L +++ M QA ++E A+ +RDRL+ L +Q Sbjct: 198 VNNSIRFLQGDTKELNQELIAKMEQAAADLEFEKAVFYRDRLSLLREVQAQQAVFKVKGE 257 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPC 299 D ++ + + C+Q G+ G ++F Q+LS F+ FY Sbjct: 258 ADILAIAYQAGVTCVQIMHVRNGRMLGGKSYFPDM-LGDDLGQMLSDFMANFYFQVADEV 316 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P ++++ + LE + +Q+G KV+I + + + +E A +N + +LS Sbjct: 317 PSELIVNTALPDRKELEEALAQQFGKKVQIKSSVRETRAEWLELAEMNVQHAIKGQLSNH 376 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + + P IE +D SH MG + + VV + G K YR+F + Sbjct: 377 LELNERFHQLEQVVGRPIDR--IECFDISHTMGEAPIASCVVFDQGGARKRDYRQFAIQD 434 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A MR L RR+ + + PD++++DGGKGQL A Sbjct: 435 --ITAGDDYAAMRQALTRRYKKAM-------------------LPDLLLIDGGKGQLHMA 473 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 V+++L +E ++ ++KG R G+E G + L L+ IQ++RDEAHR Sbjct: 474 IEVMQELGLEAF--MVGVSKGEGRKPGLETLHFTDGTKIQLPEDSKALHLIQQVRDEAHR 531 Query: 540 FAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAIT HR +R K+ + S L+ I G+GP R+R LL FG ++ + ++S + L + G+ + Sbjct: 532 FAITKHRAKRDKRRSTSVLEAIPGLGPKRRRDLLTHFGGIQGVLKASEKELTVVPGLGEV 591 Query: 599 IACKIYNHFHK 609 +A IY H+ Sbjct: 592 MARTIYKILHE 602 >gi|297198890|ref|ZP_06916287.1| excinuclease ABC, C subunit [Streptomyces sviceus ATCC 29083] gi|297147230|gb|EDY55222.2| excinuclease ABC, C subunit [Streptomyces sviceus ATCC 29083] Length = 684 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 179/641 (27%), Positives = 306/641 (47%), Gaps = 58/641 (9%) Query: 13 YQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTCTEVEALL 71 Y+ D RV+YVGKA +L++R+ +Y + R M++ ++ +TV TEVEAL Sbjct: 2 YRFRDEHRRVIYVGKAKSLRQRLANYFQDLASLHPRTRTMVTTAASVEWTVVSTEVEALQ 61 Query: 72 LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAV 131 LE + IK PRFN+ RDDKS+PY+ +T + P + R YFGP+ A+ Sbjct: 62 LEYSWIKEYDPRFNVKYRDDKSYPYLAVTMNEEFPRVQVMRGHKRKGVRYFGPYGHAWAI 121 Query: 132 EKTINSLQRTFFLRSCADSVFRHRT---RPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 T++ L R F +R+C+ VF++ T RPCLL I +CS PC +S++++ + E Sbjct: 122 RDTVDLLLRVFPVRTCSAGVFKNATRTGRPCLLGYIGKCSAPCVDRVSADEHRDLAEEFC 181 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRMDCF 245 F++G ++ + M A + +YE A RD + AL + + D Sbjct: 182 DFMAGRTGTYIRRLEKQMTDAAEEMEYERAARLRDDIGALKKAMEKSAVVLADATDADLI 241 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK---PCPEN 302 ++ ++ A +Q G+ RG + E T ++ + L+Q Y ++ P+ Sbjct: 242 AVAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEEITTGALVEHALQQLYGEERGDSVPKE 301 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS- 361 +L+ E ++ ++ G V + +P++G+K+ ++E NA ++ + S Sbjct: 302 VLVPALPEPVEPVQEWLAERRGSGVSLRIPQRGDKKALMETVQRNALQALALHKTKRASD 361 Query: 362 ---HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 L++ + L P RIE YD SH+ G V MVV + K++YR+F + Sbjct: 362 LTTRSRALEEIAEALDLDSAPLRIECYDISHLQGDDVVASMVVFEDGLQRKSEYRRFQIK 421 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNF--------------------------- 451 QDD M V+ RRF + + +E Sbjct: 422 G--FAGQDDVRSMHEVISRRFKRYLAEKEKTGEWVDDASQTDLKDASGNDVPAVSGTGPQ 479 Query: 452 --------HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR 503 + F P +V++DGG+ Q++AA+ L +L +++ I + +AK + Sbjct: 480 GVPESGLKDDDGRPKKFAYPPQLVVVDGGQPQVAAAKKALDELGIDD-IAVCGLAKRLE- 537 Query: 504 SAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEING 562 E + + +VL LY +QR+RDEAHRFAIT R +R ++ SPLD++ G Sbjct: 538 ----EVWLPDDEDPVVLPRTSEGLYLLQRVRDEAHRFAITYQRTKRAQRFRSSPLDDVPG 593 Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 +G RK+ LL+ FG++K + ++ + + + GI +K A I Sbjct: 594 LGDTRKQALLKHFGSLKKLRSATIDQICEVPGIGRKTAETI 634 >gi|85059149|ref|YP_454851.1| excinuclease ABC subunit C [Sodalis glossinidius str. 'morsitans'] gi|119367840|sp|Q2NTS9|UVRC_SODGM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|84779669|dbj|BAE74446.1| excinuclease ABC subunit C [Sodalis glossinidius str. 'morsitans'] Length = 610 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 211/616 (34%), Positives = 338/616 (54%), Gaps = 31/616 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY M D++G V+YVGKA +L+KR+ SY + + + ++ I++I T+T Sbjct: 13 TVTSQPGVYSMYDLSGTVIYVGKAKDLKKRLASYFRAQVASRKTEALVKSIHHIDVTITH 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P + HR + +G YFGP Sbjct: 73 TETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDAHPRITSHRGAKHAKGDYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEF 183 F + AV++T+ LQ+ F +R C DSV+R+R+RPCL +QI RC GPC +S E+Y + Sbjct: 132 FPNGYAVKETLALLQKLFPIRQCEDSVYRNRSRPCLQYQIGRCLGPCVAGLVSDEEYQQQ 191 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM- 242 V + FLSG + + ++ M A+ ++E A RD++ A+ + +R Sbjct: 192 VEYVRLFLSGKDQQVLNQLVERMELASRALNFEDAAHARDQIQAVRRVTEKQFVSGDRED 251 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----K 297 D + + +AC+ F G+ G+ ++F K + A+++ F+ QFY + Sbjct: 252 LDVIGVSFDAGMACVHVLFIRQGKVLGSRSYFPKVPVGTELAEVVQTFVGQFYLQGSQMR 311 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P ILL E +LL S +Q G K++I +G++ + ++ A NA + KLS Sbjct: 312 SLPGEILLDFTLPEKTLLAASLSEQAGRKIQIQTQPRGDRARYLKLARTNAATALVTKLS 371 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + + L + + R+E +D SH MG + V+ NG V+ +YR++N+ Sbjct: 372 QQSTVHQRLAALAELLGI-QAINRMECFDISHTMGEHTIASCVIFDGNGSVRAEYRRYNI 430 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + DD A M VL RR+ + ++ ++ PDVVI+DGGKGQL Sbjct: 431 EG--ITPGDDYAAMDQVLRRRYGKALEEKK---------------IPDVVIIDGGKGQLG 473 Query: 478 AAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRL 533 A+ V ++L V ++R+ ++ +AKG R AG+E F+ GE + L P L+ IQ + Sbjct: 474 MAKAVFEQLEVPWDKSRVVLLGVAKGVDRKAGLETLFLQPHGEGMALPPDSPALHVIQHI 533 Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RD++H AIT HR +R K S L+ I G+GP R++ LL+ G ++ + +S E +A + Sbjct: 534 RDDSHNHAITGHRNKRAKVKNTSALELIEGVGPRRRQSLLKYMGGLQPLRNASVEEIAQV 593 Query: 593 EGISKKIACKIYNHFH 608 GIS +A KI+N Sbjct: 594 PGISGALAEKIFNALK 609 >gi|170782352|ref|YP_001710685.1| excinuclease ABC subunit C [Clavibacter michiganensis subsp. sepedonicus] gi|169156921|emb|CAQ02089.1| ABC excision nuclease subunit C [Clavibacter michiganensis subsp. sepedonicus] Length = 642 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 192/640 (30%), Positives = 308/640 (48%), Gaps = 43/640 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 ++ ++P PGVY+ D A RVLYVGKA NL+ R+ +Y + R M++ + + Sbjct: 12 AAGEIPTSPGVYRFRDAADRVLYVGKANNLRARLANYFAPLESLHERTRRMVTSAAGVEW 71 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV +E EAL LE IK P FN+ RDDKS+PY+ +T P + R+ Sbjct: 72 TVVGSEFEALQLEFTWIKEFDPPFNVKFRDDKSYPYLAVTMGEDYPRVMVTRNRKIRGAK 131 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP+ V A+ +T++ L + F +RSC++S F+ RPCLL I RC+ PC G S Sbjct: 132 YFGPYTKVWAIRETVDHLLKVFPMRSCSESTFKRARQTNRPCLLGDIGRCAAPCVGRFSQ 191 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E++ + V + F++G + ++ + M A + DYE+A HRD + AL + Sbjct: 192 EEHRDIVDDFASFMAGNDSKYVGQLTQRMKDAAAEMDYEAAARHRDDIGALEAALSKTAV 251 Query: 238 IYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 +++ D F + ++ A +Q G+ RGT T+ + + + +++ L Y Sbjct: 252 VFDDRVDADVFGIAADELAAAVQQFMVRGGRIRGTRTWVVDKELDIGIGELVETVLHNAY 311 Query: 295 TDKPCPENILLSEEAEETSLLEISFF----------------KQYGYKVKITVPKQGEKR 338 D+ P +L E + + + ++V + V ++G+K Sbjct: 312 EDEAHPPREVLVPELPADAAELELWLSQRRAAGEDDGSVRRGRPSSWQVDLRVAQRGDKA 371 Query: 339 KIIEQALINAHRSHTQKLSTEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIMGCS 394 + A NA + + S L D + +P P R+E YD SH+ G + Sbjct: 372 ALAHTAATNAQNALMLYKTRRSSDFTTRSKALADIQEALGMPDAPLRMECYDVSHLSGTN 431 Query: 395 AVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE------N 448 V MVV + K+QYR+FN+ + DD + V+ RR + L K E Sbjct: 432 IVASMVVFEDGLPRKDQYRRFNIAD----STDDTESIHQVITRRLAYLGKEAEVPADAAP 487 Query: 449 LNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGME 508 F P+++I+DGG+ Q++AAQ L++ V I + IAK + E Sbjct: 488 PELGEAPPVNKFSYSPNLLIVDGGQPQVAAAQRALEESGVTG-IQLAGIAKRLE-----E 541 Query: 509 KFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRK 568 + ++L L+ IQR+RDEAHRFAIT R RRK+ S L+EI G+GP R Sbjct: 542 IWLPDSDYPIILPRNSDALFLIQRIRDEAHRFAITHQRARRKRDITSVLNEIPGLGPSRV 601 Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 + LLQ FG+V + ++ E +A++ I +A +Y Sbjct: 602 QRLLQQFGSVAKLKQAEVEEIAAVRTIGPTLAQAVYERLR 641 >gi|322387148|ref|ZP_08060758.1| excinuclease ABC subunit C [Streptococcus infantis ATCC 700779] gi|321141677|gb|EFX37172.1| excinuclease ABC subunit C [Streptococcus infantis ATCC 700779] Length = 608 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 170/621 (27%), Positives = 290/621 (46%), Gaps = 41/621 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTVCRKDEAYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G + + + + M A ++E A +RD + A+ ++ + Sbjct: 182 AMSQEVSDFLKGQDDKIIDDLKEKMAVAAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P IL+ ++ + ++ + K P++GEK++++ A+ NA + Sbjct: 302 VPNEILIPQDIDGEAVKALVDTKVLK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ ++ + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQRDG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L+ + +QR++ Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+ L++ F ++ I +S + + ++ Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKYFKSLTKIKEASVDEIVAV- 574 Query: 594 GISKKIACKIYNHFHKNTSHT 614 GI + +A ++ H + Sbjct: 575 GIPRAVAEAVHQHLNLEEDSA 595 >gi|95928939|ref|ZP_01311684.1| excinuclease ABC, C subunit [Desulfuromonas acetoxidans DSM 684] gi|95134840|gb|EAT16494.1| excinuclease ABC, C subunit [Desulfuromonas acetoxidans DSM 684] Length = 612 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 202/614 (32%), Positives = 314/614 (51%), Gaps = 31/614 (5%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 PGVY M GRVLYVGKA NL+ R+++Y+ + + ++ ++ + VT TE Sbjct: 14 TRPGVYLMFGEDGRVLYVGKARNLRARLRNYVRGEDTRAHVQFLLRRVVRVETIVTDTEK 73 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EAL+LE +IK+ KPR+NI LRDDK++ + I P + R YFGP++S Sbjct: 74 EALILENTLIKKHKPRYNINLRDDKTYVSLRIDITEPFPGIQIVRRVKRDGALYFGPYSS 133 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 A+++T+ L R F LR R R RPCL +QI +CS PC G+IS E Y + V Sbjct: 134 AGALKETLKELYRIFPLRHHRWQQCRRRDRPCLFYQIGQCSAPCHGKISQEDYRKLVDTV 193 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRMDC 244 FLSG + ++ + M QA + +YE A RD++ A+ + D Sbjct: 194 IAFLSGRHDDVINMLRDKMAQAAQEMNYEEAARLRDQIRAMEQTIEQQKVVSADGTDSDV 253 Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304 L+ + F G+ G ++ L + + + + + D P +L Sbjct: 254 VGLHREGGEVEVCLLFVRAGRLVGRRSYLLSWTLDEDEL-LAGFLQQYYGRDTLIPPKVL 312 Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364 L L++ ++ G KV + VPK+G + +++E A NA S+ ++ + Sbjct: 313 LPLLPSSAETLQLWLSERRGSKVHLQVPKRGARSELLELANKNATESYRERGDRRDARTA 372 Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424 +L+D K L +P+R+E YD S++ G +VG MVV + K YR + + V+ Sbjct: 373 VLEDIQKSLGLSRLPQRMECYDISNVQGQYSVGSMVVTTDGEPDKAAYRHYRIKT--VEG 430 Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484 DD A + VL RR S+ I+ ++ PD+V++DGGKGQL+ VL Sbjct: 431 ADDFASLHEVLTRRLSRGIEEQD---------------LPDMVLIDGGKGQLAMVDDVLT 475 Query: 485 KLNVENRITIISIAK--------GPKRSAGMEKFF-VKKGEALVLNMRDPILYFIQRLRD 535 LN+ +RI ++SIAK G E+FF + +VL P L+ ++RLRD Sbjct: 476 TLNLHSRIDLVSIAKSRVKRNVRGHAVERSEERFFRPGRKNPVVLRQGSPALFMLERLRD 535 Query: 536 EAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFAIT HRK R KA S LD+I G+GP R++ LL+ G+V + ++S + L + G Sbjct: 536 EAHRFAITHHRKLRNKATLESELDKIPGVGPGRRKALLKHCGSVTKVKKASLQELQQVPG 595 Query: 595 ISKKIACKIYNHFH 608 + +A +Y++FH Sbjct: 596 VPDSVAQAVYDYFH 609 >gi|269102847|ref|ZP_06155544.1| excinuclease ABC subunit C [Photobacterium damselae subsp. damselae CIP 102761] gi|268162745|gb|EEZ41241.1| excinuclease ABC subunit C [Photobacterium damselae subsp. damselae CIP 102761] Length = 589 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 207/606 (34%), Positives = 332/606 (54%), Gaps = 31/606 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M + + V+YVGKA +L+KR+ SY +N + ++ I+ + TVT TE EAL+LE Sbjct: 1 MYNASDEVIYVGKAKDLKKRLSSYFRTNVAGEKTRALVKNIHKVDVTVTHTETEALILEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK+ P++N+LLRDDKS+PYI ++ H+ P L HR +G YFGP+ AV ++ Sbjct: 61 NYIKQYLPKYNVLLRDDKSYPYIFLS-HHQHPRLSMHRGVKRRKGEYFGPYPDAGAVRES 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHEAKKFLSG 193 ++ +Q+ F +R C DSV+ +R+RPCL++QI RCS PC IS E Y V A+ FL G Sbjct: 120 LHLMQKIFPVRQCEDSVYANRSRPCLMYQIGRCSAPCVKGYISDEDYQGQVQLARLFLQG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDC---FSLYHN 250 + + + M A+ D+E A ++RD++ AL +Q ++ D + H Sbjct: 180 KDRQVIAMLVEKMETASQNLDFEKAAVYRDQIQALRRVQEQQFVSHDTEDDLDVVGIAHE 239 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP----CPENILLS 306 +ACI + G+ G+ ++F K ++ ++LS F+ QFY ++ P NI+LS Sbjct: 240 NGMACIHALYIRQGKILGSRSYFPKMPADVELTEVLSSFVTQFYLNQAEGRVIPTNIILS 299 Query: 307 EEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365 E+ +ET+++ + + G KV +G + + ++ A NA + T KL+ +++ Q Sbjct: 300 EDLGDETAVISDTLSQLAGRKVVFKYHPRGNRARYLKLAQTNAKTALTSKLNHKMTIQER 359 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 + + +L I R+E +D SH MG V VV ++G K YR++N+ + Sbjct: 360 FFELQQALSLKPIS-RMECFDISHTMGEKTVASCVVFNQDGPYKPDYRRYNI--TGITGG 416 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD A M VLERR+ + ++ ++ PD++ +DGG+GQLS A V+K Sbjct: 417 DDYAAMAQVLERRYGKQMELDK---------------IPDIIFIDGGRGQLSRAYDVVKP 461 Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 + R +I +AKG R G+E GE L P L+ IQ +RDE+H AI+ Sbjct: 462 YMEDWPKRPLMIGVAKGTTRKPGLETLIFITGEEFSLPSDSPALHLIQHIRDESHNHAIS 521 Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR +R K S L++I G+GP R++ LL+ G ++ + R+S E +A + GIS +A K Sbjct: 522 GHRAQRAKVRKRSALEDIEGVGPKRRQALLKYMGGLQELKRASKEEIAKVPGISLALAEK 581 Query: 603 IYNHFH 608 I + H Sbjct: 582 IVDALH 587 >gi|322506533|gb|ADX01987.1| uvrC [Acinetobacter baumannii 1656-2] gi|323516412|gb|ADX90793.1| excinuclease ABC subunit C [Acinetobacter baumannii TCDC-AB0715] Length = 599 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 197/611 (32%), Positives = 312/611 (51%), Gaps = 32/611 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + + PGVY+ML G +LYVGKA NL+ R+ SY + ++++I +I VT Sbjct: 15 NLTQLPGVYKMLGKEGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVARIYDIETLVTR 74 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFG 123 +E EALLLE N+IK+ +P +NI+LRDDKS+ YI ++ P + R Q G +FG Sbjct: 75 SETEALLLEQNLIKQHRPPYNIMLRDDKSYVYIFVSADKPYPRIASGRGKGKHQIGKFFG 134 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ S + T+ LQ+ F +R C +S F R RPCL +QIKRCS PC G +S E Y E Sbjct: 135 PYPSAYSARDTLLVLQKLFNVRQCENSYFSQRKRPCLQYQIKRCSAPCVGLVSPEDYKED 194 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNR 241 V+ + +FL G L +++ M QA ++E A+ +RDRL+ L +Q Sbjct: 195 VNNSIRFLQGDTKELNQELIAKMEQAAADLEFEKAVFYRDRLSLLREVQAQQAVFKVKGE 254 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPC 299 D ++ + + C+Q G+ G ++F Q+LS F+ FY Sbjct: 255 ADILAIAYQAGVTCVQIMHVRNGRMLGGKSYFPDM-LGDDLGQMLSDFMANFYFQVADEV 313 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P ++++ + LE + +Q+G KV+I + + + +E A +N + +LS Sbjct: 314 PSELIVNTALPDRKELEEALAQQFGKKVQIKSSVRETRAEWLELAEMNVQHAIKGQLSNH 373 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + + P IE +D SH MG + + VV + G K YR+F + Sbjct: 374 LELNERFHQLEQVVGRPIDR--IECFDISHTMGEAPIASCVVFDQGGARKRDYRQFAIQD 431 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A MR L RR+ + + PD++++DGGKGQL A Sbjct: 432 --ITAGDDYAAMRQALTRRYKKAM-------------------LPDLLLIDGGKGQLHMA 470 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 V+++L +E ++ ++KG R G+E G + L L+ IQ++RDEAHR Sbjct: 471 IEVMQELGLEAF--MVGVSKGEGRKPGLETLHFTDGTKIQLPEDSKALHLIQQVRDEAHR 528 Query: 540 FAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAIT HR +R K+ + S L+ I G+GP R+R LL FG ++ + ++S + L + G+ + Sbjct: 529 FAITKHRAKRDKRRSTSVLEAIPGLGPKRRRDLLTHFGGIQGVLKASEKELTVVPGLGEV 588 Query: 599 IACKIYNHFHK 609 +A IY H+ Sbjct: 589 MARTIYKILHE 599 >gi|154706355|ref|YP_001424631.1| excinuclease ABC subunit C [Coxiella burnetii Dugway 5J108-111] gi|189038044|sp|A9KFP2|UVRC_COXBN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|154355641|gb|ABS77103.1| excinuclease ABC subunit C [Coxiella burnetii Dugway 5J108-111] Length = 609 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 219/618 (35%), Positives = 338/618 (54%), Gaps = 26/618 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P GVYQ+ D G+V+YVGKA NLQKR+ SY + + M++Q+ +I+ T+ Sbjct: 10 LKTLPTGSGVYQIQDAQGKVIYVGKARNLQKRVSSYFRRQLDS-KTQAMMAQVQSIQTTI 68 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T E EALLLEA+ IK+ +PR+N+LLRDDKS+PY+ + K P L +R + G YF Sbjct: 69 TRNENEALLLEASFIKQFRPRYNVLLRDDKSYPYLYLATHQKFPRLDFYRGAKKAPGRYF 128 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +V + + +Q+ F LR C++S F++RTRPCL +QIKRC+ PC G ++ ++Y Sbjct: 129 GPYPNAGSVRENLALIQKLFKLRQCSESFFKNRTRPCLQYQIKRCTAPCVGYVNEQEYRR 188 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YN 240 V +A F G N + K+ M A+ +E A +RD++ L +Q Sbjct: 189 QVEDAILFFEGKNDQVIIKLTERMEVASENLVFEEAAHYRDQIRQLRRLQKQQIITGGKG 248 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT----D 296 +D + + F G+ G FF T +T L F+ Q+Y + Sbjct: 249 NIDIIGIAESNGAIGFAILFIRSGRMIGHKPFFPNTPLGTTLQTALVEFIPQYYLSPLRN 308 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 PE I+ SE E+ ++ + ++ IT K+ ++ A +NA ++ +Q L Sbjct: 309 GDIPERIVTSEPLEDRLWIQRALSSGLNRRLAITDQKRAPYKQWQAMAALNAAQALSQHL 368 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + + + + L+ K ALP+ RIE +D SH +G + V VV GE G +K YR+FN Sbjct: 369 AQKNTFALKLEAIQKSLALPNPIARIECFDISHTLGEATVASCVVFGEEGLIKKDYRRFN 428 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + V DD +R L RR+ +L + E PDV+++DGG GQL Sbjct: 429 I--SGVTPGDDYGALRQALTRRYVRLKEGE--------------GILPDVLLIDGGMGQL 472 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535 A VL++L V I + +IAKGP R AG+EK FV + E + L + + IQ++RD Sbjct: 473 RQAAEVLEELQVSGVI-LTAIAKGPGRKAGLEKLFVWGRREEIHLPADNIAFHLIQQIRD 531 Query: 536 EAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFAIT H RR K+ S L EI GIGP R++ LL+ FG ++ + R+S E +A + G Sbjct: 532 EAHRFAITAHCNRRAKRRVESTLQEIEGIGPKRRQKLLKYFGGLQELQRASIEEIARVPG 591 Query: 595 ISKKIACKIYNHFHKNTS 612 +S+ +A IY+ H++ Sbjct: 592 VSETLAKAIYDACHQHKG 609 >gi|296108290|ref|YP_003619991.1| excinuclease ABC subunit C [Legionella pneumophila 2300/99 Alcoy] gi|295650192|gb|ADG26039.1| excinuclease ABC subunit C [Legionella pneumophila 2300/99 Alcoy] Length = 593 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 215/611 (35%), Positives = 332/611 (54%), Gaps = 34/611 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 MLD G VLYVGKA NL+KR+ SY N + ++SQI +I +VT +E EALLLE+ Sbjct: 1 MLDEEGTVLYVGKAANLKKRVNSYFSKQNTGVKTRALVSQIKSIEISVTRSETEALLLES 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFGPFASVDAVEK 133 N+IK L+P++N+LLRDDKS+PYI +++ P + +R G++FGP+ V AV + Sbjct: 61 NLIKALRPKYNVLLRDDKSYPYIHLSNHPDFPRIELYRSKKKPPSGNFFGPYPGVAAVRE 120 Query: 134 TINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSG 193 TI ++Q+ F +R+C DS F+ R+RPCL +QIKRC+ PC IS E Y V +A +FL G Sbjct: 121 TIVTIQKIFKIRNCRDSYFKARSRPCLQYQIKRCTAPCVHYISPENYKLSVEDAIRFLQG 180 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NRMDCFSLYHNK 251 + +++A M QA + ++E A + RD++ L IQ + D ++ Sbjct: 181 KCQIILDELAERMKQAVNQLNFEEAAVLRDQIKNLRLIQEQQGVVQLRGDADVIAIEVRP 240 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ---------ILSYFLRQFYTDKP--CP 300 ACIQ GQ + +FF + + F+ +Y D P Sbjct: 241 GFACIQCVTIREGQVLNSQSFFPTVPYAVLDEELDANSLWQQTFEAFVGFYYLDTSERIP 300 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + I+ ++ E+ LE ++ G KI V +G K + ++ A+ N S + +S Sbjct: 301 DLIITNQSITESRPLEYILSQRRGKSCKIQVNPRGVKSRWMDFAVNNLRISVAEYVSKHS 360 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 + + + + AL +R+E +D SH G + V VV G ++YR+FN+ Sbjct: 361 TIRSRYQALKQLLALDKNIERMECFDISHTQGEATVASCVVFDTEGPRPSEYRRFNIEG- 419 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 + DD A M + RRF +LI + PDV+I+DGGKGQ+S + Sbjct: 420 -ITPGDDYAAMEQAVTRRFKRLIDAQ---------------LLPDVLIIDGGKGQVSIVK 463 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYFIQRLRDEAHR 539 VL L VE+ IT++ ++KGP R AG EK V + VL L+ +Q +RDEAHR Sbjct: 464 RVLTSLGVED-ITLLGVSKGPSRKAGWEKLILVNENREFVLPEDSKALHLLQHIRDEAHR 522 Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAIT HRK+R+K S L+ I G+G R++ LLQ FG ++ ++++ E + ++GIS++ Sbjct: 523 FAITAHRKKRQKTRVESTLESIEGVGAKRRQALLQRFGGLRELAKAPLEEICKVQGISEQ 582 Query: 599 IACKIYNHFHK 609 +A +I+ HFH Sbjct: 583 LAKRIHEHFHP 593 >gi|295839538|ref|ZP_06826471.1| excinuclease ABC subunit C [Streptomyces sp. SPB74] gi|197696882|gb|EDY43815.1| excinuclease ABC subunit C [Streptomyces sp. SPB74] Length = 818 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 183/623 (29%), Positives = 303/623 (48%), Gaps = 38/623 (6%) Query: 23 LYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLK 81 +YVGKA +L++R+ +Y N R M++ ++ +TV TEVEAL LE + IK Sbjct: 2 IYVGKAKSLRQRLANYFQDLANLHPRTRTMVTTAASVEWTVVSTEVEALQLEYSWIKEYD 61 Query: 82 PRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRT 141 PRFN+ RDDKS+PY+ +T + P R + YFGP+ A+ T++ L R Sbjct: 62 PRFNVKYRDDKSYPYLAVTMNEEFPRAQVMRGAKRKGVRYFGPYGHAWAIRDTVDLLLRV 121 Query: 142 FFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNL 198 F +R+C+ VF++ RPCLL I +CS PC G IS E + + + F++G + Sbjct: 122 FPVRTCSSGVFKNAARTGRPCLLGYIDKCSAPCVGRISPEDHRDLAEDFCHFMAGHTGHY 181 Query: 199 KEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRMDCFSLYHNKNLAC 255 ++ M +A +YE A RD + AL+ + + D +L ++ A Sbjct: 182 LRRLEERMTEAAEDMEYERAARLRDDVGALTRAMEKSAVVLADATDADLIALAEDELEAA 241 Query: 256 IQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK---PCPENILLSEEAEET 312 +Q G+ RG + T ++ + L+Q Y ++ P+ +L+ E Sbjct: 242 VQIFHVRGGRVRGQRGWVTDKVEAVTTGDLVEHALQQLYGEERGDSVPKEVLVPALPEPV 301 Query: 313 SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS----HQMILKD 368 ++ ++ G +V + VP++G+KR ++E NA +S + S L++ Sbjct: 302 RPVQEWLSERRGAQVSLRVPQRGDKRALMETVERNAQQSLVLHKTKRASDLTTRSRALEE 361 Query: 369 FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDC 428 L +P RIE YD SH+ G V MVV + K++YR+F + + QDD Sbjct: 362 IAAALDLDGVPLRIECYDISHLQGDDVVASMVVFEDGLARKSEYRRFQIKG--FEGQDDV 419 Query: 429 AMMRMVLERRFSQLIKNEENLNF---------------HPKKQEYSFPSWPDVVILDGGK 473 M V+ RRF + + E + F P ++++DGG+ Sbjct: 420 RSMHEVITRRFRRYLAEREKTGEWTEEELDGPVESGGLDEDGRPKRFAYPPQLLVVDGGQ 479 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 Q++AA+ L +L +++ + + +AK + E + + + +VL LY +QR+ Sbjct: 480 PQVAAARRALDELGIDD-VAVCGLAKRLE-----EVWVPGEEDPVVLPRSSEGLYLLQRV 533 Query: 534 RDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDEAHRFAIT R +R K PLDE+ G+G RK+ LL+ FG+VK + ++ E + + Sbjct: 534 RDEAHRFAITYQRSKRAKRFRAGPLDEVPGLGQSRKQALLKHFGSVKKLRAATIEQICEV 593 Query: 593 EGISKKIACKIYNHFHKNTSHTP 615 GI +K A I F ++ P Sbjct: 594 PGIGRKTAETILATFARSEPGAP 616 >gi|91788931|ref|YP_549883.1| excinuclease ABC subunit C [Polaromonas sp. JS666] gi|119367682|sp|Q128Q7|UVRC_POLSJ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|91698156|gb|ABE44985.1| Excinuclease ABC subunit C [Polaromonas sp. JS666] Length = 666 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 215/662 (32%), Positives = 327/662 (49%), Gaps = 74/662 (11%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PGVY+ D G VLYVGKA NL+KR+ SY N+ RI HM+++I + TV + Sbjct: 20 LPAMPGVYRYFDAEGGVLYVGKARNLKKRVSSYFQKNHGATRIGHMVTKIVRMETTVVRS 79 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHK-----------IPALYKHRDS 114 E EALLLE N+IK L P++NIL RDDKS+PY+ +T P + +R + Sbjct: 80 EAEALLLENNLIKTLNPKYNILFRDDKSYPYLKLTAVQPSEAGSAPVATAFPRIAYYRGA 139 Query: 115 STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE 174 + YFGP+ S AV+ T+ LQ+ F LR+C D+VF +RTRPCLL+QIKRCS PC G Sbjct: 140 VEKKHRYFGPYPSAWAVKDTMLLLQKVFRLRTCEDTVFNNRTRPCLLYQIKRCSAPCVGH 199 Query: 175 ISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234 +S E+Y A++FL G + ++ R M + ++E A R++++ALS + + Sbjct: 200 VSPEQYALDTANAERFLQGQTQEILTELERKMLAHADRLEFEQAAELRNQMSALSKVLHQ 259 Query: 235 NDSIYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ------- 284 +D ++ AC+ G++ G +F +T+ Sbjct: 260 QSMEIGGDKDVDILAVKVQGGKACVNLAMVRGGRHLGDRPYFPTHVENATDVAALDAQAD 319 Query: 285 --------------------------------ILSYFLRQFYTDKPCPENILLSEEAEET 312 +L F+ Q Y D P P ++ SE ++ Sbjct: 320 EGAGGGGPESDDRAGKTVVPLPARPAKSLEALVLEAFIAQHYIDVPVPPTLVCSEPVDKD 379 Query: 313 SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKK 372 + + Q G K+ + ++R ++ A NA + L+ + S Q + + Sbjct: 380 LISAL--AAQTGSKITAIHQPREQRRIWLDMAQKNAALQLARLLAEQGSQQARTRALAEA 437 Query: 373 FAL---PHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCA 429 L RIE +D SH G S VV + ++YR++N+ + DD A Sbjct: 438 LDLSLDNLDALRIECFDISHTAGESTQASCVVFQGHKMQNSEYRRYNIEG--ITPGDDYA 495 Query: 430 MMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE 489 MR VL RR+++L + N N PD+V++DGGKGQ+S A+ V +L ++ Sbjct: 496 AMRQVLTRRYTKLAEAARNGN----------ARLPDLVLVDGGKGQVSMAREVFVELGLD 545 Query: 490 NRITIISIAKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKR 548 + I + KG R G+E+ G + L L I ++RDEAHRFAIT R R Sbjct: 546 LGL-IAGVEKGEGRKVGLEELVFADGREKVYLGRDSAALMLIAQIRDEAHRFAITGMRAR 604 Query: 549 RKKAAY--SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 R K S L++I GIGP R+ LLQ FG ++ I+ +S E +A+++GISK +A +IY Sbjct: 605 RAKVRVGGSKLEDIAGIGPKRRASLLQRFGGIRGIASASAEDIATVDGISKDLAEEIYRA 664 Query: 607 FH 608 H Sbjct: 665 LH 666 >gi|237746710|ref|ZP_04577190.1| excinuclease ABC subunit C [Oxalobacter formigenes HOxBLS] gi|229378061|gb|EEO28152.1| excinuclease ABC subunit C [Oxalobacter formigenes HOxBLS] Length = 634 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 216/620 (34%), Positives = 337/620 (54%), Gaps = 35/620 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D ++LYVGKA +L KR+ +Y + + RI M+ +I ++ TVT Sbjct: 34 QLPHLPGVYRFFDKNDKLLYVGKARDLVKRVSTYFQKTSPSPRIAMMVGRIARLQTTVTR 93 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +EVEAL+LE+N+IK L P +NI+ RDDKS+PY+ +T + ++P + +R + + YFGP Sbjct: 94 SEVEALILESNLIKTLHPHYNIIFRDDKSYPYLKVTGQ-RVPRIVYYRGTVDRKNEYFGP 152 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F + AV +TI LQ+ F LR+C DSVFR+RTRPCLL+QI RCSGPC G I Y V Sbjct: 153 FPNASAVRETIQILQKVFRLRTCEDSVFRNRTRPCLLYQIGRCSGPCAGLIGENAYRRDV 212 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 A +FL G + ++ M + ++E A + R+++AALS + + + Sbjct: 213 EHAVRFLRGEQTAILGELQEKMEGYARRLEFEEAALVRNQIAALSQVLHQQSMETDNEAE 272 Query: 243 --DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFL-------KTDSESTNAQILSYFLRQF 293 D ++ + ACI G++ G F + + E +IL FL Q Sbjct: 273 DVDIIAVVVRQGCACINLAMVRGGRHLGDHAVFPGNMGSAVENEGEKRETRILKAFLAQH 332 Query: 294 YTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 Y D+ P ++L+ + +E +L+ +Q G+++ + QG++R +E A NA + Sbjct: 333 YIDRQIPRTLVLNLDFDEPALMMA-LSEQAGHRIHLVFQPQGQRRLWLEMAQKNAEIALE 391 Query: 354 QKLST---EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + LS ++S L D K RIE +D SH G + VV + Sbjct: 392 RVLSKSGTQLSRVKALIDLMKLDIDDPDSLRIEAFDISHTQGEAVQASCVVFHHCAMQNS 451 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 +YR++N+ + DD A M+ VL RR+ +L+ +E+ + P +V++D Sbjct: 452 EYRRYNI--AGITPGDDYAAMKQVLTRRYGKLVGHEDLM--------------PHIVLVD 495 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYF 529 GGKGQ+S A V +L + + I+ +AKG R G+E G L +L Sbjct: 496 GGKGQVSMASQVFAELGHDLGL-IVGVAKGEGRKVGLETLVYADGRLPQELGKDSGVLML 554 Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 I ++RDEAHRFAIT R +R KK S L+EI G+G R++ LL FG+V+ I+ +S + Sbjct: 555 IAQIRDEAHRFAITGMRAKRDKKRQASRLEEIEGVGAKRRQRLLARFGSVRGIADASVDD 614 Query: 589 LASIEGISKKIACKIYNHFH 608 LA++EGIS ++A +IY+ H Sbjct: 615 LATVEGISHRLAQQIYDQLH 634 >gi|148272930|ref|YP_001222491.1| excinuclease ABC subunit C [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830860|emb|CAN01804.1| putative excinuclease ABC subunit C [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 642 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 192/640 (30%), Positives = 307/640 (47%), Gaps = 43/640 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 ++ ++P PGVY+ D A RVLYVGKA NL+ R+ +Y + R M++ + + Sbjct: 12 AAGEIPTSPGVYRFRDAADRVLYVGKANNLRARLANYFAPLESLHERTRRMVTSAAGVEW 71 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV +E EAL LE IK P FN+ RDDKS+PY+ +T P + R+ Sbjct: 72 TVVGSEFEALQLEFTWIKEFDPPFNVKFRDDKSYPYLAVTLGEDYPRVMVTRNRKIRGAK 131 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP+ V A+ +T++ L + F +RSC++S F+ RPCLL I RC+ PC G +S Sbjct: 132 YFGPYTKVWAIRETVDHLLKVFPMRSCSESTFKRARQTNRPCLLGDIGRCAAPCVGRVSD 191 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E++ E + F++G + ++ + M A + DYE+A HRD + AL + Sbjct: 192 EEHREIADDFVSFMAGNDSKYVGQLTQRMKDAAAEMDYEAAARHRDDIGALEAALSKTAV 251 Query: 238 IYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 +++ D F + ++ A +Q G+ RGT T+ + + + +++ L Y Sbjct: 252 VFDDRVDADVFGIAADELAAAVQQFMVRGGRIRGTRTWVVDKELDIGIGELVETVLHNAY 311 Query: 295 TDKPCPENILLSEEAEETSLLEISFF----------------KQYGYKVKITVPKQGEKR 338 D+ P +L E + + ++V + V ++G+K Sbjct: 312 EDEAHPPREVLVPELPADDAELELWLSQRRAAGEDDGTVRRGRPSSWQVDLRVAQRGDKA 371 Query: 339 KIIEQALINAHRSHTQKLSTEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIMGCS 394 + A NA + + S L D + +P P R+E YD SH+ G + Sbjct: 372 ALAHTAATNAQNALMLYKTRRSSDFTTRSKALADIQEALGMPDAPLRMECYDVSHLSGTN 431 Query: 395 AVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE------N 448 V MVV + K+QYR+FN+ + DD + V+ RR + L K E Sbjct: 432 IVASMVVFEDGLPRKDQYRRFNIAD----STDDTESIHQVITRRLAYLGKEAEVPADAAP 487 Query: 449 LNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGME 508 F P+++I+DGG+ Q++AAQ L++ V I + IAK + E Sbjct: 488 PELGEAPPVNKFSYSPNLLIVDGGQPQVAAAQRALEESGVTG-IQLAGIAKRLE-----E 541 Query: 509 KFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRK 568 + ++L L+ IQR+RDEAHRFAIT R RRK+ S L+EI G+GP R Sbjct: 542 IWLPDSDYPIILPRNSDALFLIQRIRDEAHRFAITHQRARRKRDITSVLNEIPGLGPSRV 601 Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 + LLQ FG+V + ++ E +A++ I +A +Y Sbjct: 602 QRLLQQFGSVAKLKQAEVEEIAAVRTIGPTLARAVYERLR 641 >gi|121604533|ref|YP_981862.1| excinuclease ABC subunit C [Polaromonas naphthalenivorans CJ2] gi|120593502|gb|ABM36941.1| Excinuclease ABC subunit C [Polaromonas naphthalenivorans CJ2] Length = 649 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 217/644 (33%), Positives = 330/644 (51%), Gaps = 56/644 (8%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PGVY+ D G VLYVGKA NL+KR+ SY N+ RI HMI++I + TV + Sbjct: 21 LPPLPGVYRYFDEQGGVLYVGKARNLKKRVTSYFQKNHGGTRIGHMITKIVRMETTVVRS 80 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKH-----------KIPALYKHRDS 114 E EALLLE N+IK L P++NIL RDDKS+PY+ +T P + +R + Sbjct: 81 EAEALLLENNLIKTLNPKYNILFRDDKSYPYLKLTAAQTQPKGGAPSATAYPRIAYYRGA 140 Query: 115 STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE 174 + YFGP+ S AV+ TI LQ+ F LR+C D+VF +RTRPCLL+QIKRCS PC G Sbjct: 141 VEKKHHYFGPYPSSWAVKDTILLLQKVFRLRTCEDTVFNNRTRPCLLYQIKRCSAPCVGH 200 Query: 175 ISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234 +S E+Y A++FL G + ++ R M + ++E A R++++ALS I + Sbjct: 201 VSPEQYALDTANAERFLQGQTQEILGELERKMLAHADRLEFEQAAELRNQMSALSKILHQ 260 Query: 235 NDSIYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ------- 284 +D ++ AC+ G++ G +F + + Sbjct: 261 QSMEVGGDKDVDILAVKVQGGKACVNLAMVRGGRHLGDRPYFPTHVENAADVAALDAEPE 320 Query: 285 --------------ILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKIT 330 +L F+ Q Y D P P +++SE ++ + + +Q G +V Sbjct: 321 APADQPKEKSIEALVLEAFIAQHYIDVPVPPTLVVSEPVDKHLMAAL--AEQTGSRVAAV 378 Query: 331 VPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP---KRIEIYDN 387 + ++R +E A NA + L+ + S Q + + LP RIE +D Sbjct: 379 HQPREQRRIWLEMAQKNAGLQLARLLAEQGSQQARTRALAEALELPLDNLDALRIECFDI 438 Query: 388 SHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE 447 SH G S VV E+ ++YR++N+ + DD A MR VL RR+++L + Sbjct: 439 SHTAGESTQASCVVFKEHKMQSSEYRRYNIEG--ITPGDDYAAMRQVLMRRYTKLAEAAR 496 Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507 N + PD+V++DGGKGQ++ A+ V +L ++ + I + KG R G+ Sbjct: 497 N----------GEATLPDLVLVDGGKGQVAMAREVFVELGLDLGL-IAGVEKGEGRKVGL 545 Query: 508 EKFFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--SPLDEINGIG 564 E+ G + + L L I ++RDEAHRFAIT R RR K S L++I GIG Sbjct: 546 EELVFADGRDKVYLGRDSAALMLIAQIRDEAHRFAITGMRARRAKVRVGGSRLEDIAGIG 605 Query: 565 PLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 P ++ LLQ FG V+ I+ +S E +A ++GIS ++A +IY H Sbjct: 606 PKKRASLLQRFGGVRGIASASVEDIAMVDGISTELAEEIYRALH 649 >gi|284047896|ref|YP_003398235.1| excinuclease ABC, C subunit [Acidaminococcus fermentans DSM 20731] gi|283952117|gb|ADB46920.1| excinuclease ABC, C subunit [Acidaminococcus fermentans DSM 20731] Length = 618 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 185/617 (29%), Positives = 312/617 (50%), Gaps = 39/617 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFTVTC 64 +P PGVY M D +G+V+YVGKA L+ R++SY + + ++ + + + +I VT Sbjct: 12 LPNAPGVYIMHDASGKVIYVGKAVILKNRVRSYFRPASQVSPKVRAINAHVASIETIVTA 71 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E+EAL+LE N+IK+ +PR+NI L+DDK++PY+ IT P + R Y+GP Sbjct: 72 SEMEALILECNLIKKYRPRYNIDLKDDKTYPYLKITVGEAYPRMVLTRRVLKDGARYYGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 FA A+ T+ ++ F LR C + + RPCL + + RC PCTG++ +Y + V Sbjct: 132 FADAGALRDTMKLIRTMFPLRHCRNL---NAKRPCLQYHLHRCLAPCTGKVPVSEYRQMV 188 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--DSIYNRM 242 L G L++ + M QA+ ++E+A +RD L +L + + Sbjct: 189 DAVLLLLDGKVTQLEKDLTAKMQQASDNLEFEAAARYRDSLLSLRKLAEKQKATTESGDR 248 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-CPE 301 D L + + C+Q F G+ G +FFL + + ++L FL+Q+Y + P Sbjct: 249 DVVGLAMDDSGVCVQVFFIRSGKILGRDSFFLDQEIGEPDGEVLGDFLKQYYHENHRPPR 308 Query: 302 NILLSEEAEETS--LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST- 358 IL+S E ++ LL V + VP++G K ++ A+ NA ++ ++L Sbjct: 309 EILVSAELADSDRTLLGQWLSSLCEKPVNLLVPQRGLKHDLVLMAVNNAKKNLEERLRRG 368 Query: 359 ---EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 + + K L +R++ +D SH G V MVV + K YR++ Sbjct: 369 HASGQTGLDAAEQLQKALGLAKPLERMDCFDISHNQGRETVASMVVFRDGVPSKKDYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 L + DD M+ V+ RR+ L P ++I+DGGKGQ Sbjct: 429 KLRSTEG-KPDDFKSMQEVVYRRYRDLED------------------LPSLIIIDGGKGQ 469 Query: 476 LSAAQGVLKKLNV-ENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 LS+A V++ L + + +I +AK + E F +++L+ P L+ IQ +R Sbjct: 470 LSSACEVIRGLGITPEEVPVIGLAKREE-----EIFKEGAHTSILLDKMSPALHLIQHIR 524 Query: 535 DEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DEAHRFAIT HRKR K+ S LD + G+GP R+ L + FG++ + ++S E LA+++ Sbjct: 525 DEAHRFAITYHRKRLGKRNLVSVLDHLEGLGPKRRAALWKRFGSLDAMRQASVEDLAAVD 584 Query: 594 GISKKIACKIYNHFHKN 610 +++ +A +++ + Sbjct: 585 TMNRTVAERVHTFLQGS 601 >gi|320093539|ref|ZP_08025431.1| excision endonuclease subunit UvrC [Actinomyces sp. oral taxon 178 str. F0338] gi|319979495|gb|EFW10965.1| excision endonuclease subunit UvrC [Actinomyces sp. oral taxon 178 str. F0338] Length = 678 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 211/667 (31%), Positives = 322/667 (48%), Gaps = 63/667 (9%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA NL+ R+ +Y N R M++ +++TV Sbjct: 13 DIPTSPGVYRFSDANGRVIYVGKAKNLRNRLANYFQDLANLHPRTQQMVTTAARVQWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 EVEAL LE IK PRFN++ +DDKS+PY+ +T P L+ R + YFG Sbjct: 73 GNEVEALTLEFTWIKEFNPRFNVMFKDDKSYPYLAVTMGEAYPRLHAVRGARKPGARYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180 PF ++ +TI+ L R F +R+C+ VFR + RPCLL I +CS PC G IS E + Sbjct: 133 PFVQAWSIRETIDQLVRVFPVRTCSPGVFRRARAQGRPCLLGYIDKCSAPCVGRISEEDH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 E F+ G + + + M A+ D+E+A RD +AAL + N + Sbjct: 193 RAMALELCSFMQGRAGPVIADLEQQMRSASAALDFETAARLRDDVAALRAVLERNAVVLA 252 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D F+L ++ A + G+ RGT + ++ ++ +++ L Q Y+ Sbjct: 253 DGTDADVFALATDELDAAVHVFHVRGGRVRGTRGWVVERSDDADEPALIARLLEQVYSQA 312 Query: 298 P-----------------------------CPENILLSEEAEETSLLEISFFKQYGYKVK 328 P +L+S + + +E G +V+ Sbjct: 313 TPDDPPAPGERAQKAEAVSVDDVAHTPTSAIPREVLVSTAPTDRATIEEWLTGLRGGRVR 372 Query: 329 ITVPKQGEKRKIIEQALINAHR----SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEI 384 + VP++GEK ++ + NA + H+++ + L++ + LP P RIE Sbjct: 373 VRVPQRGEKAHLMGTVMENARQGLALHHSKRAGDITARAQALEELAAQLDLPGAPLRIEC 432 Query: 385 YDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLI 443 YD SH MG V MVV + K+ YR FN+ D DD A M VL RRFS+L+ Sbjct: 433 YDVSHTMGTLQVASMVVFEDGAPRKDAYRSFNIRGADGGGAPDDTAAMDEVLTRRFSRLL 492 Query: 444 KNE-------------ENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVEN 490 E E+ + F PD+V++DGG Q +AA+ L V Sbjct: 493 AEESGEQGEDEEGVPLESGPVDATGRPRRFSYRPDLVVVDGGPAQAAAARAALD--GVGA 550 Query: 491 RITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK 550 + +I +AK + E + + ++L P LY +Q LRDE+HRFAIT HRKRR Sbjct: 551 DVPVIGLAKRLE-----EVWAPGEEFPIILPRTSPALYMLQHLRDESHRFAITKHRKRRS 605 Query: 551 KA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 KA S LD+I G+GP R+ LL+ FG+V+ + +S E +A + GI +A I + + Sbjct: 606 KAQTRSALDKIPGLGPSRQTALLKHFGSVRRLRAASAEQIAQVSGIGPVLAAAIRDSLSE 665 Query: 610 N-TSHTP 615 + T+ TP Sbjct: 666 SGTADTP 672 >gi|313624056|gb|EFR94140.1| excinuclease ABC subunit C [Listeria innocua FSL J1-023] Length = 603 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 181/622 (29%), Positives = 301/622 (48%), Gaps = 45/622 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY + + + ++ +I + + VT + Sbjct: 13 LPDQPGCYLMKDRQGTIIYVGKAKVLKNRVRSYFSGTHDS-KTQRLVQEIVDFEYIVTSS 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 VEALLLE N+IK+ PRFNI L+DDK++P+I IT+ + P L R +G YFGP+ Sbjct: 72 NVEALLLEINLIKKHDPRFNIRLKDDKTYPFIKITN-ERHPRLIITRQVKKDKGKYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A + L R + LR C+ + CL + + +C PC ++ + KY E Sbjct: 131 PNVYAANEVKRILDRLYPLRKCSTLP----NKVCLYYHLGQCLAPCVFDVEASKYKEMQD 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E FL+GG +K + + M +A ++E A RD++ A+ N Sbjct: 187 EIVAFLNGGYKTVKNDLMKKMQEAAENMEFEKAGEFRDQINAIETTMEKQKMTMNDFVDR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +++ + + P+ Sbjct: 247 DVFGYAIDKGWMCVQVFFIRQGKLIERDVSQFPFYNDADEDFLTFIGQFYQKANHIPPKE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS----T 358 I L ++ + ++ + KI VP++G K+ +++ A NA + +K Sbjct: 307 IYLPDDVDSEAVQAVVP------DTKIIVPQRGNKKDLVKLAYKNAKIALNEKFMLLERN 360 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E ++ + +P R+E +DNS+I G V MV + KN YRK+ + Sbjct: 361 EERTVGAVERLGEAMGIPTPS-RVEAFDNSNIHGTDPVSAMVTFLDGKPSKNDYRKYKIK 419 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD A MR V+ RR+ +++K PD++++DGGKGQ+ + Sbjct: 420 T--VEGPDDYATMREVIRRRYWRVLKEG--------------LPMPDLILIDGGKGQIDS 463 Query: 479 AQGVL-KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ VL +L ++ I + +AK K F E + L Y +QR++DE Sbjct: 464 AKDVLTNELGLD--IPVAGLAKDDKHRTSQ-LLFGDPLEIVPLERNSQEFYLLQRMQDEV 520 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R K+ S LD I G+GP RK+ LL+ FG++K + +S E + G+ Sbjct: 521 HRFAITFHRQLRSKSGFQSILDGIPGVGPGRKKKLLKHFGSMKKLKEASVEEIKEA-GVP 579 Query: 597 KKIACKIYNH---FHKNTSHTP 615 +A +++ H F++ +T Sbjct: 580 LNVAEEVHKHITAFNEKAKNTE 601 >gi|312866699|ref|ZP_07726913.1| excinuclease ABC, C subunit [Streptococcus parasanguinis F0405] gi|311097780|gb|EFQ56010.1| excinuclease ABC, C subunit [Streptococcus parasanguinis F0405] Length = 611 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 173/620 (27%), Positives = 295/620 (47%), Gaps = 41/620 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + + +C + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHLGQCMAHTVCHKDEAYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G + + +++ MN A ++E A +RD + A+ ++ + Sbjct: 182 GMAQEVSDFLKGQDDKIIDELKLKMNTAAQNMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P IL+ ++ +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 IPNEILIPQDIDEEAVKALVDTKVLK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ K +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSMEKTQGAIENLGKLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+S+++++ + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYSRVMRDG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F + + L+ + +QR++ Sbjct: 458 QVNIAKQVIQE-GLGLDIPIAGLQKNDKHQT-HELLFGDPLQVIELSRTSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K + +S LD I G+GP RK+LL++ F ++ I ++ E + ++ Sbjct: 516 DEVHRFAITFHRQLRSKNSFFSQLDGIEGLGPKRKQLLMKHFKSLTKIKEATVEEIVTV- 574 Query: 594 GISKKIACKIYNHFHKNTSH 613 GI + +A + H+ Sbjct: 575 GIPRAVAEAVQAKLHQGKQE 594 >gi|307611521|emb|CBX01198.1| hypothetical protein LPW_28971 [Legionella pneumophila 130b] Length = 593 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 214/611 (35%), Positives = 330/611 (54%), Gaps = 34/611 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 MLD G VLYVGKA NL+KR+ SY N + ++SQI +I +VT +E EALLLE+ Sbjct: 1 MLDEEGTVLYVGKAANLKKRVNSYFSKQNTGVKTRALVSQIKSIEISVTRSETEALLLES 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFGPFASVDAVEK 133 N+IK L+P++N+LLRDDKS+PYI +++ P + +R G++FGP+ V AV + Sbjct: 61 NLIKALRPKYNVLLRDDKSYPYIHLSNHPDFPRVELYRSKKKPPSGNFFGPYPGVAAVRE 120 Query: 134 TINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSG 193 TI ++Q+ F +R+C DS F+ R+RPCL +QIKRC+ PC IS E Y V +A +FL G Sbjct: 121 TIVTIQKIFKIRNCRDSYFKARSRPCLQYQIKRCTAPCVHYISPENYKLSVEDAIRFLQG 180 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NRMDCFSLYHNK 251 + +++A M QA + ++E A + RD++ L IQ + D ++ Sbjct: 181 KCQIILDELAERMKQAVSQLNFEEAAVLRDQIKNLRLIQEQQGVVQLRGDADVIAIEVRP 240 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ---------ILSYFLRQFYTDKP--CP 300 ACIQ GQ + +FF + + F+ +Y D P Sbjct: 241 GFACIQCVTIREGQVLNSQSFFPTVPYAVLDEELDANSLWQQTFEAFIGFYYLDTSERIP 300 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + I+ ++ E+ LE ++ KI V +G K + ++ A+ N S + +S Sbjct: 301 DLIITNQSITESRSLEYILSQRRSKSCKIQVNPRGVKSRWMDFAVNNLRISVAEYVSKHS 360 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 + + + + AL +R+E +D SH G + V VV G ++YR+FN+ Sbjct: 361 TIRSRYQALKQLLALDKNIERMECFDISHTQGEATVASCVVFDTEGPRPSEYRRFNIEG- 419 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 + DD A M + RRF +LI PD++I+DGGKGQ+S + Sbjct: 420 -ITPGDDYAAMEQAVTRRFKRLI---------------GAQLLPDILIIDGGKGQVSIVK 463 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYFIQRLRDEAHR 539 VL L VE+ IT++ ++KGP R AG EK V + VL L+ +Q +RDEAHR Sbjct: 464 RVLTSLGVED-ITLLGVSKGPSRKAGWEKLILVNENREFVLPEDSKALHLLQHIRDEAHR 522 Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAIT HRK+R+K S L+ I G+G R++ LLQ FG ++ ++++ E + ++GIS++ Sbjct: 523 FAITAHRKKRQKTRVESTLESIEGVGAKRRQALLQRFGGLRELAKAPLEEICKVQGISEQ 582 Query: 599 IACKIYNHFHK 609 +A +IY HFH Sbjct: 583 LAKRIYEHFHP 593 >gi|169634575|ref|YP_001708311.1| excinuclease ABC subunit C [Acinetobacter baumannii SDF] gi|229557972|sp|B0VLX1|UVRC_ACIBS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|169153367|emb|CAP02488.1| excinuclease ABC subunit C; UvrC with UvrAB is a DNA excision repair enzyme [Acinetobacter baumannii] Length = 599 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 197/611 (32%), Positives = 312/611 (51%), Gaps = 32/611 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + + PGVY+ML G +LYVGKA NL+ R+ SY + ++++I +I VT Sbjct: 15 NLTQLPGVYKMLGKEGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVARIYDIETLVTR 74 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFG 123 +E EALLLE N+IK+ +P +NI+LRDDKS+ YI ++ P + R Q G +FG Sbjct: 75 SETEALLLEQNLIKQHRPPYNIMLRDDKSYVYIFVSADKPYPRIASGRGKGKHQIGKFFG 134 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ S + T+ LQ+ F +R C +S F R RPCL +QIKRCS PC G +S E Y E Sbjct: 135 PYPSAYSARDTLLVLQKLFNVRQCENSYFSQRKRPCLQYQIKRCSAPCVGLVSPEDYKED 194 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNR 241 V+ + +FL G L +++ M QA ++E A+ +RDRL+ L +Q Sbjct: 195 VNNSIRFLQGDTKELNQELIAKMEQAAADLEFEKAVFYRDRLSLLREVQAQQAVFKVKGE 254 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPC 299 D ++ + + C+Q G+ G ++F Q+LS F+ FY Sbjct: 255 ADILAITYQAGVTCVQIMHVRNGRMLGGKSYFPDM-LGDDLGQMLSDFMANFYFQVADEV 313 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P ++++ + LE + +Q+G KV+I + + + +E A +N + +LS Sbjct: 314 PSELIVNTALPDRKELEEALAQQFGKKVQIKSSVRETRAEWLELAEMNVQHAIKGQLSNH 373 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + + P IE +D SH MG + + VV + G K YR+F + Sbjct: 374 LELNERFHQLEQVVGRPIDR--IECFDISHTMGEAPIASCVVFDQGGARKRDYRQFAIQD 431 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A MR L RR+ + + PD++++DGGKGQL A Sbjct: 432 --ITAGDDYAAMRQALTRRYKKAM-------------------LPDLLLIDGGKGQLHMA 470 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 V+++L +E ++ ++KG R G+E G + L L+ IQ++RDEAHR Sbjct: 471 MEVMQELGLEAF--MVGVSKGEGRKPGLETLHFTDGTKIQLPEDSKALHLIQQVRDEAHR 528 Query: 540 FAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAIT HR +R K+ + S L+ I G+GP R+R LL FG ++ + ++S + L + G+ + Sbjct: 529 FAITKHRAKRDKRRSTSVLEAIPGLGPKRRRDLLTHFGGIQGVLKASEKELTVVPGLGEV 588 Query: 599 IACKIYNHFHK 609 +A IY H+ Sbjct: 589 MARTIYKILHE 599 >gi|260219737|emb|CBA26582.1| UvrABC system protein C [Curvibacter putative symbiont of Hydra magnipapillata] Length = 664 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 212/647 (32%), Positives = 328/647 (50%), Gaps = 50/647 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PGVY+ D G+VLYVGKA +L+KR+ SY N+ RI HM+S+I + TV + Sbjct: 24 LPSLPGVYRYFDADGQVLYVGKAISLKKRVSSYFQKNHGGTRIGHMVSKIVRMETTVVRS 83 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIP------------------- 106 E EALLLE N+IK L P++NIL RDDKS+PY+ +T +P Sbjct: 84 EAEALLLENNLIKTLNPKYNILFRDDKSYPYLKMTGTPPVPKNMAPAAAAVTARAPQPAE 143 Query: 107 --ALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQI 164 + +R + + YFGP+ S AV++ I +Q+ F LR+C DS+F +RTRPCLL+QI Sbjct: 144 FARVSYYRGAVEKKHRYFGPYPSAWAVKEAILLMQKVFRLRTCEDSIFANRTRPCLLYQI 203 Query: 165 KRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR 224 KRCSGPC G I Y + V A++FL G ++ + M K ++E A R++ Sbjct: 204 KRCSGPCVGHIQPLDYAQDVANAERFLRGEAQDVMRGLESRMMAHAEKLEFEKAAELRNQ 263 Query: 225 LAALSHIQNHNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST 281 +AALS++ + +D ++ AC+ G++ G +F +++ Sbjct: 264 VAALSNVLHQQSVDNVSDRDVDILAVKVQGGKACVNLAMVRGGRHLGDRPYFPVHVEDAS 323 Query: 282 NAQIL--------------SYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKV 327 + F+ Q Y P P +++SE + + + +Q G K Sbjct: 324 AMESAEEGLATASVEVQVLEAFIAQHYIQVPMPSVLVVSEPVSKGLMQAL--AEQTGVKA 381 Query: 328 KITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFAL---PHIPKRIEI 384 + ++R ++ A NA + L+ E S Q + L RIE Sbjct: 382 SAIHQPREQRRAWLDMAQTNAGLQLARLLAEEGSQQARTRALADALDLALENLDELRIEC 441 Query: 385 YDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIK 444 +D SH G + VV ++ +YR+FN+ + + DD A MR VL RR+S++ Sbjct: 442 FDISHTAGEATQASCVVFQQHKMQNAEYRRFNI--DGITGGDDYAAMRQVLTRRYSKI-A 498 Query: 445 NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRS 504 H + PD+V++DGGKGQ+S A+ V + L ++ + I+ + KG R Sbjct: 499 EAIREAKHSGTPPSNSARLPDLVLVDGGKGQVSMAKEVFESLGLDLSL-IVGVEKGEGRK 557 Query: 505 AGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--SPLDEIN 561 G+E+ G + + L L + ++RDEAHRFAIT R R K S L+EI Sbjct: 558 VGLEELVFADGRDKVYLGADSAALMLVAQIRDEAHRFAITGMRAARAKVRTGGSKLEEIP 617 Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 GIGP R+ LLQ FG V+ + ++S + +AS+EGIS+++A +IY H Sbjct: 618 GIGPKRRARLLQRFGGVRGVEQASAQDIASVEGISRELAEEIYRALH 664 >gi|46907453|ref|YP_013842.1| excinuclease ABC subunit C [Listeria monocytogenes serotype 4b str. F2365] gi|67461980|sp|Q720J5|UVRC_LISMF RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|46880721|gb|AAT04019.1| excinuclease ABC, C subunit [Listeria monocytogenes serotype 4b str. F2365] Length = 603 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 182/622 (29%), Positives = 301/622 (48%), Gaps = 45/622 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY + + + ++ +I + + VT + Sbjct: 13 LPDQPGCYLMKDRQGTIIYVGKAKILKNRVRSYFSGTHDS-KTQRLVQEIVDFEYIVTSS 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 VEALLLE N+IK+ PRFNI L+DDK++P+I IT+ + P L R +G YFGP+ Sbjct: 72 NVEALLLEINLIKKHDPRFNIRLKDDKTYPFIKITN-ERHPRLIITRQVKKDKGKYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A + L R + LR C+ + CL + + +C PC ++ + KY E Sbjct: 131 PNVYAANEVKRILDRLYPLRKCSTLP----NKVCLYYHLGQCLAPCVFDVEASKYKEMQD 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E FL+GG +K + + M +A ++E A RD++ A+ N Sbjct: 187 EIVTFLNGGYKTVKNDLMKKMQEAAENMEFEKAGEFRDQINAIETTMEKQKMTMNDFVDR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +++ + + P+ Sbjct: 247 DVFGYAIDKGWMCVQVFFIRQGKLIERDVSQFPFYNDADEDFLTFIGQFYQKANHIPPKE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS----T 358 I L ++ + ++ + KI VP++G K+ +++ A NA + +K Sbjct: 307 IYLPDDVDSEAVQAVVP------DTKIIVPQRGNKKDLVKLAYKNAKIALNEKFMLLERN 360 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E ++ + +P R+E +DNS+I G V MV + KN YRK+ + Sbjct: 361 EERTVGAVERLGEAMGIPTPS-RVEAFDNSNIHGTDPVSAMVTFLDGKPSKNDYRKYKIK 419 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD A MR V+ RR+ +++K E PD++++DGGKGQ+ + Sbjct: 420 T--VEGPDDYATMREVIRRRYWRVLKEE--------------LPMPDLILIDGGKGQIDS 463 Query: 479 AQGVL-KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ VL +L ++ I + +AK K F E + L Y +QR++DE Sbjct: 464 AKDVLTNELGLD--IPVAGLAKDDKHRTSQ-LLFGDPLEIVPLERNSQEFYLLQRMQDEV 520 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R K S LD I G+GP RK+ LL+ FG++K + +S E + G+ Sbjct: 521 HRFAITFHRQLRSKTGFQSILDGIPGVGPGRKKKLLKHFGSMKKLKEASVEEIKEA-GVP 579 Query: 597 KKIACKIYNH---FHKNTSHTP 615 +A +++ H F++ +T Sbjct: 580 LNVAEEVHKHITAFNEKAKNTE 601 >gi|218135110|ref|ZP_03463914.1| hypothetical protein BACPEC_03015 [Bacteroides pectinophilus ATCC 43243] gi|217990495|gb|EEC56506.1| hypothetical protein BACPEC_03015 [Bacteroides pectinophilus ATCC 43243] Length = 640 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 197/642 (30%), Positives = 323/642 (50%), Gaps = 43/642 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M D ++Y+GKA +L+ R++ Y S+ N + +I HM+S I++ + Sbjct: 7 ELKKLPSKPGVYIMHDKTDAIIYIGKAVSLKNRVRQYFQSSRNLSVKIQHMVSNIDHFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE N+IK +P++N +L+DDKS+P+I +T K P + R + Sbjct: 67 IITDSELEALVLECNLIKEHRPKYNTMLKDDKSYPFIKVTVNEKYPRVLFARSMKKDKSR 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV+ TI L R + +R+C+ + + RPCL + I +CS PC G IS E Sbjct: 127 YFGPYTSAGAVKDTIELLCRLYRIRTCSRKLPADMCKDRPCLNYHINQCSAPCQGYISEE 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235 +Y E V + FL+G + K+ M +A+ K +YE A +RD + ++ I Sbjct: 187 EYKESVRQVIDFLNGNYSEILNKLKDKMMEASDKMEYEDAAQYRDLITSVKQIAQKQKIT 246 Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 DS + D + + A +Q F G+ G F + + + +I+ F++Q+Y Sbjct: 247 DSDFEDRDVIACAIQGDDAVVQVFFIRGGKLLGREHFHMNVAASDSRMEIVQEFMKQYYG 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351 P P I++ +E E ++ + G KV I VPK+G + K++E A NA Sbjct: 307 GTPYIPGIIMVQDELSEKDIISEWLTSRRGLKVSILVPKKGTREKMVELAFKNAQMVLDK 366 Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + + + + +++ L KR+E YD S+ G +VG MVV + N Sbjct: 367 DNERIKNEQKKTVGAMQEIADWLDL-GTIKRVEAYDISNTNGIESVGSMVVFEDGRPKNN 425 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE------------- 457 YRKF + VK DD MR VL RRF++ ++ L K Sbjct: 426 DYRKFRIKT--VKGPDDYKSMREVLTRRFTRGMEERRILVEQEHKDRLLAEQEIVIDEAA 483 Query: 458 ----------YSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507 F +PD++++DGG+GQ++ A VL +L ++ I + + K Sbjct: 484 GGETKEKIHLAGFNVYPDLIMMDGGRGQVNIALDVLNELGLD--IPVCGMVKDDNHRTRG 541 Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPL 566 + ++ I R++DEAHRFAI HR R KA S LD+I G+GP Sbjct: 542 ---LYYNNVEIPIDRHSEGFKLITRVQDEAHRFAIEYHRSLRSKAQVSSVLDDIEGVGPA 598 Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 R++ L++ F + +I + E L +GI++++A IY +FH Sbjct: 599 RRKALMKHFLDINVIRNADVEELMQADGITRQVAGNIYRYFH 640 >gi|147669666|ref|YP_001214484.1| excinuclease ABC subunit C [Dehalococcoides sp. BAV1] gi|189038046|sp|A5FQB7|UVRC_DEHSB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|146270614|gb|ABQ17606.1| Excinuclease ABC subunit C [Dehalococcoides sp. BAV1] Length = 607 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 213/613 (34%), Positives = 330/613 (53%), Gaps = 27/613 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +PE PGVY M + G ++YVGKA L+ R+KSY + T + ++SQIN + + +T Sbjct: 12 SLPENPGVYLMKNAQGEIIYVGKAAVLKDRVKSYFVPPSRLTPKTCQLVSQINELEYLIT 71 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E EAL+LE N+IKR +P FN+ L+DDK FPY+ IT K P +Y R + G YFG Sbjct: 72 GSEQEALILELNLIKRHRPYFNVRLKDDKGFPYLKITLNEKWPRIYITRSMADDGGRYFG 131 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFA+ +V T+ L+ F RSC + R+RPCL + I +C PCTG+IS Y Sbjct: 132 PFANTRSVRHTLQVLKELFRFRSCNRTEPEKRSRPCLEYDIHQCLSPCTGKISKSDYDHL 191 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND---SIYN 240 + +A FL G + + + R MN+A+ + DYE+A + RD++A++ + + Sbjct: 192 ISQAILFLEGKQDQVLKLLIRLMNEASARLDYETAALRRDQIASIKEVIEGQQLAARVTG 251 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-C 299 D + +L+ +Q F G+ G +F L+ E ILS F +QFY Sbjct: 252 EQDAIAFAQEGDLSMVQVFFIRRGKLIGRESFCLQGTREEKPGDILSEFAKQFYHSSTQI 311 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQK 355 P I+ + +LE ++ G KV IT +G+ +++I NA ++ + Sbjct: 312 PPKIVTQYPVSDREILEKWLSQRRGDKVHITAGLRGQPKELINIVAENAREQLKQARIKN 371 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS+ ++ L + L P+RIE YD S+I G +AVG MVV K YR+F Sbjct: 372 LSSSVTLTDALAELQTALGLSLPPQRIEGYDISNIQGTNAVGSMVVFENGKPQKAHYRRF 431 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 + VK DD +M++ V+ RRF ++ + + SF P ++++DGGKGQ Sbjct: 432 RIKT--VKGADDFSMLKEVISRRFGRVHRED---------AGESFARLPSLMLIDGGKGQ 480 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 LS+ + L KL +E + +I +AK + E + K E + L P L +QR+RD Sbjct: 481 LSSVKETLDKLGLEGQ-AVIGLAKEFE-----EIYLPHKSEPIRLAANSPALQLLQRVRD 534 Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFA+ H R+K+ S LD I G+GP R+RLL+++FG+V I ++S E L+ ++G Sbjct: 535 EAHRFALGYHLHIRQKSGLTSALDGIPGVGPSRRRLLIKTFGSVAGIRQASFEKLSQVKG 594 Query: 595 ISKKIACKIYNHF 607 I++ +A I Sbjct: 595 INQALALSIKELL 607 >gi|86608727|ref|YP_477489.1| excinuclease ABC subunit C [Synechococcus sp. JA-2-3B'a(2-13)] gi|119367851|sp|Q2JM21|UVRC_SYNJB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|86557269|gb|ABD02226.1| excinuclease ABC, C subunit [Synechococcus sp. JA-2-3B'a(2-13)] Length = 623 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 202/626 (32%), Positives = 310/626 (49%), Gaps = 37/626 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFT 61 +++P PGVY M D ++LYVGK+ L+ R++SY +++ + RI M++Q+ I F Sbjct: 16 LKEIPAEPGVYLMRDATDQILYVGKSKKLRSRVRSYFRFTSDLSPRIQRMVAQVCEIEFI 75 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG-- 119 VT E EAL LE N+IK +P +N+LL+DDK +PY+ IT P LY R + Sbjct: 76 VTDNESEALALEDNLIKTHQPPYNVLLKDDKKYPYLCITWSEPYPQLYITRHRRLDRNQD 135 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 Y+GP+ V + T+ ++R F LR +++ RT CL + I RC G C G IS E+ Sbjct: 136 KYYGPYTDVGLLRHTLGLVKRIFPLRQRPKPLYKDRT--CLNYDIGRCPGVCQGLISPEE 193 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + + + G L ++ M QA +E+YE+A +RD++ L + Sbjct: 194 YRKTLTQVAMIFQGQTDELIRELQEKMIQAAEQENYEAAARYRDQIRGLEQLGESQKVSL 253 Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D +L N + ACIQ G+ G F + + + + Sbjct: 254 PNSTVSRDALALAMNDSRACIQLFQVRAGKLVGRLGFVAENRGDDPGLILQRALQEHYQY 313 Query: 296 DKP--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 P P IL E + LE ++ G KV + P++ K ++IE NA T Sbjct: 314 CDPVEIPSEILTQYELPDHDFLESWLSQKKGRKVSLVAPQRQSKAELIELVERNAQLELT 373 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + L+ + LP +P+R+E YD SHI G AV VV + K YR Sbjct: 374 RTQRLADRDAAALERLAEVLDLPDVPRRLEAYDISHIQGSDAVASQVVFIDGLPAKQHYR 433 Query: 414 KFNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 ++ + +V+ D A V RRFS++ ++ PD+V++DG Sbjct: 434 RYKIRNPEVRPGHSDDFASHAEVARRRFSKMTPEDQ----------------PDLVLIDG 477 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GKGQLSA VL L ++ + +I++AK + E F L L +DP +Q Sbjct: 478 GKGQLSAVMAVLADLGLD-HLPVIALAKREE-----EIFLPGNPVPLRLPAQDPARLLLQ 531 Query: 532 RLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 RLRDEAHRFA+ HR++RK + S LDEI G+G R++LL++ F ++ I +S + LA Sbjct: 532 RLRDEAHRFALAFHRQQRKARQHASTLDEIPGLGKYRQKLLMEEFRSIARIQVASEDQLA 591 Query: 591 SIEGISKKIACKIYNHFHKNT-SHTP 615 + GI KIA +IY +FH T + +P Sbjct: 592 QVPGIGPKIARQIYRYFHPETQAESP 617 >gi|47094129|ref|ZP_00231851.1| excinuclease ABC, C subunit [Listeria monocytogenes str. 4b H7858] gi|226223834|ref|YP_002757941.1| excinuclease ABC subunit C [Listeria monocytogenes Clip81459] gi|254823512|ref|ZP_05228513.1| excinuclease ABC [Listeria monocytogenes FSL J1-194] gi|254852897|ref|ZP_05242245.1| excinuclease ABC [Listeria monocytogenes FSL R2-503] gi|254932888|ref|ZP_05266247.1| excinuclease ABC [Listeria monocytogenes HPB2262] gi|255521233|ref|ZP_05388470.1| excinuclease ABC subunit C [Listeria monocytogenes FSL J1-175] gi|300764383|ref|ZP_07074377.1| excinuclease ABC, C subunit [Listeria monocytogenes FSL N1-017] gi|259710343|sp|C1L2D9|UVRC_LISMC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|47017496|gb|EAL08307.1| excinuclease ABC, C subunit [Listeria monocytogenes str. 4b H7858] gi|225876296|emb|CAS05005.1| Putative excinuclease ABC subunit C [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606232|gb|EEW18840.1| excinuclease ABC [Listeria monocytogenes FSL R2-503] gi|293584442|gb|EFF96474.1| excinuclease ABC [Listeria monocytogenes HPB2262] gi|293592732|gb|EFG00493.1| excinuclease ABC [Listeria monocytogenes FSL J1-194] gi|300515035|gb|EFK42088.1| excinuclease ABC, C subunit [Listeria monocytogenes FSL N1-017] gi|328466628|gb|EGF37763.1| excinuclease ABC subunit C [Listeria monocytogenes 1816] gi|328475253|gb|EGF46034.1| excinuclease ABC subunit C [Listeria monocytogenes 220] gi|332311619|gb|EGJ24714.1| UvrABC system protein C [Listeria monocytogenes str. Scott A] Length = 603 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 182/622 (29%), Positives = 301/622 (48%), Gaps = 45/622 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY + + + ++ +I + + VT + Sbjct: 13 LPDQPGCYLMKDRQGTIIYVGKAKILKNRVRSYFSGTHDS-KTQRLVQEIVDFEYIVTSS 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 VEALLLE N+IK+ PRFNI L+DDK++P+I IT+ + P L R +G YFGP+ Sbjct: 72 NVEALLLEINLIKKHDPRFNIRLKDDKTYPFIKITN-ERHPRLIITRQVKKDKGKYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A + L R + LR C+ + CL + + +C PC ++ + KY E Sbjct: 131 PNVYAANEVKRILDRLYPLRKCSTLP----NKVCLYYHLGQCLAPCVFDVEASKYKEMQD 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E FL+GG +K + + M +A ++E A RD++ A+ N Sbjct: 187 EIVAFLNGGYKTVKNDLMKKMQEAAENMEFEKAGEFRDQINAIETTMEKQKMTMNDFVDR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +++ + + P+ Sbjct: 247 DVFGYAIDKGWMCVQVFFIRQGKLIERDVSQFPFYNDADEDFLTFIGQFYQKANHIPPKE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS----T 358 I L ++ + ++ + KI VP++G K+ +++ A NA + +K Sbjct: 307 IYLPDDVDSEAVQAVVP------DTKIIVPQRGNKKDLVKLAYKNAKIALNEKFMLLERN 360 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E ++ + +P R+E +DNS+I G V MV + KN YRK+ + Sbjct: 361 EERTVGAVERLGEAMGIPTPS-RVEAFDNSNIHGTDPVSAMVTFLDGKPSKNDYRKYKIK 419 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD A MR V+ RR+ +++K E PD++++DGGKGQ+ + Sbjct: 420 T--VEGPDDYATMREVIRRRYWRVLKEE--------------LPMPDLILIDGGKGQIDS 463 Query: 479 AQGVL-KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ VL +L ++ I + +AK K F E + L Y +QR++DE Sbjct: 464 AKDVLTNELGLD--IPVAGLAKDDKHRTSQ-LLFGDPLEIVPLERNSQEFYLLQRMQDEV 520 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R K S LD I G+GP RK+ LL+ FG++K + +S E + G+ Sbjct: 521 HRFAITFHRQLRSKTGFQSILDGIPGVGPGRKKKLLKHFGSMKKLKEASVEEIKEA-GVP 579 Query: 597 KKIACKIYNH---FHKNTSHTP 615 +A +++ H F++ +T Sbjct: 580 LNVAEEVHKHITAFNEKAKNTE 601 >gi|315170095|gb|EFU14112.1| excinuclease ABC subunit C [Enterococcus faecalis TX1342] Length = 598 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 184/616 (29%), Positives = 311/616 (50%), Gaps = 41/616 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY ++ T + ++S+I++ + VT + Sbjct: 12 LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFRGSHDT-KTERLVSEIDDFEYIVTES 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EALLLE N+I + P++NI+L+DDK++P+I IT+ K P L R + YFGP+ Sbjct: 71 NIEALLLEINLIHKNNPKYNIMLKDDKTYPFIKITN-EKYPRLMITRKVLKDKALYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 V+A +T L R F LR C + PCL + + +C P ++ + Y + V Sbjct: 130 PDVNAANETKKLLDRLFPLRKCN----PSQKTPCLYYHLGQCLCPYAFDVDPQVYKDMVE 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNRM 242 E K FLSGG+ +++++ M A ++E A RD++ A+ + + Sbjct: 186 EIKGFLSGGHTEIQDRLQEKMAYAAAHMEFEKAAEFRDQIKAIETVMTRQKMTNVDLIDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +++ A + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRQGKLIERDVSTFPFYDDASEAFLTFIGQFYQENEHFVPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 +L+ ++ ++ S+ + K + P++GEK+K+++ A NA + + Sbjct: 306 VLIPDDIDKESVEALLATK-------VLQPQRGEKKKLVKLASKNAAVALNEKFDLIVRK 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + ++ +P RIE +DNS+IMG + V MVV + KN+YRK+ + Sbjct: 359 QERTIGAVEKLGNAMNIPAP-IRIEAFDNSNIMGTNPVSAMVVFIDGRPAKNEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD A MR V+ RR+S+++K +PD++++DGGKGQ+ Sbjct: 418 T--VQGPDDYASMREVIYRRYSRVLKEG--------------LPFPDLILIDGGKGQVDV 461 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ VL + I + +AK K E F E + L + +QR++DE H Sbjct: 462 AKDVLAN-QLGVDIPVAGLAKNDKHKTS-ELLFGPDLEVVPLERNSQEFFLLQRIQDEVH 519 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ R K ++ S LD I G+GP RK+ LL+ F ++K I+ +S E L G+ + Sbjct: 520 RFAITFHRQLRSKNSFASKLDNIEGLGPKRKKNLLKEFKSLKNITAASVEELRKA-GLPE 578 Query: 598 KIACKIYNHFHKNTSH 613 +A +Y H H+ T+ Sbjct: 579 TVAKNVYRHLHQETTS 594 >gi|238760650|ref|ZP_04621776.1| UvrABC system protein C [Yersinia aldovae ATCC 35236] gi|238701139|gb|EEP93730.1| UvrABC system protein C [Yersinia aldovae ATCC 35236] Length = 588 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 210/606 (34%), Positives = 324/606 (53%), Gaps = 31/606 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D AG V+YVGKA +L+KR+ SY + + ++ I I TVT TE+EALLLE Sbjct: 1 MYDKAGTVIYVGKAKDLKKRLTSYFRVQVASRKTETLVKNIAQIDVTVTHTEMEALLLEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK +PR+N+LLRDDKS+P I ++ P L HR + +G YFGPF + AV +T Sbjct: 61 NYIKLYQPRYNVLLRDDKSYPLIFLS-ADAHPRLTIHRGAKHEKGEYFGPFPNSYAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193 + LQR F +R C +SV+R+R+RPCL +QI RCSGPC +S E+Y V + FL G Sbjct: 120 LALLQRLFPVRQCENSVYRNRSRPCLQYQIGRCSGPCVSGLVSDEEYQRQVDYVRLFLLG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--DCFSLYHNK 251 + + ++ M +A+ +E A RD++ A+ + + D + + Sbjct: 180 KDQQVLTQLISRMEEASRLLHFEDAAHIRDQIQAVRRVTEQQFVSGDSEDLDVIGVAFDA 239 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSE 307 LAC+ F G+ G+ +++ K + + +++ F+ QFY + P ILL Sbjct: 240 GLACVHVLFIRQGKVLGSRSYYPKVPAGTELNEVVQTFVGQFYLQGSQIRTLPGEILLDF 299 Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367 E LL S + G K++I +G++ + ++ A NA + +LS + + +K Sbjct: 300 TLAEKELLATSLSELAGRKIQIQSRPRGDRARYLKLARTNASTALVTRLSQQSTIHQRMK 359 Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427 + K L R+E +D SH MG V VV NG V+++YR++N+ + + DD Sbjct: 360 ELAKILKLD-EINRMECFDISHTMGEQTVASCVVFDANGPVRSEYRRYNI--SGITPGDD 416 Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487 A M VL+RR+ + + PDV+ +DGGKGQLS A V LN Sbjct: 417 YAAMSQVLKRRYGKALD---------------SSKIPDVIFIDGGKGQLSQAFDVFASLN 461 Query: 488 V---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 V + + ++ +AKG R AG+E F+ +GE L P L+ IQ +RD++H AIT Sbjct: 462 VSWDKQKPLLVGVAKGSDRKAGLETLFLAAEGEGFSLPPDSPALHLIQHIRDDSHNHAIT 521 Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR+RR K S L+ I G+GP R+++LL+ G ++ + +S E +A + IS+ +A K Sbjct: 522 GHRQRRSKVKNTSALEMIEGVGPKRRQILLKYMGGLQPLLNASVEEIAKVPSISQALAEK 581 Query: 603 IYNHFH 608 IYN Sbjct: 582 IYNALK 587 >gi|300858531|ref|YP_003783514.1| UvrABC system protein C [Corynebacterium pseudotuberculosis FRC41] gi|300685985|gb|ADK28907.1| UvrABC system protein C [Corynebacterium pseudotuberculosis FRC41] gi|302206243|gb|ADL10585.1| UvrABC system protein C [Corynebacterium pseudotuberculosis C231] Length = 675 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 180/669 (26%), Positives = 312/669 (46%), Gaps = 69/669 (10%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA NL+ R+ +Y + R M++ +++ +TV Sbjct: 13 SIPTDPGVYKFRDSHGRVVYVGKAKNLRSRLSNYFQDLSVLHPRTRQMVTTASSVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +EVEAL LE IK+ PRFN+ RDDK++P + ++ + P + +R YFG Sbjct: 73 SSEVEALQLEYTWIKKFDPRFNVKYRDDKTYPMLAVSVGERFPRAFFYRGPQRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ AV +T++ L R F +R+C+ VF RPCLL I +CS PC G ++ +++ Sbjct: 133 PYSHAWAVRETLDLLTRVFPVRTCSKGVFNRHESLGRPCLLGYIDKCSAPCIGRVTEQEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + V+ F++G + + M A + D+E A RD + A+ I + Sbjct: 193 RDIVNGFCSFMAGKTDAVVASLNSQMLTAAEELDFERAARLRDDIHAVQKITEQQAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT--DSESTNAQILSYFLRQFYT 295 D ++ + A IQ G+ +G + ++ DSE ++L FL +FYT Sbjct: 253 DGTDADVIAISADDLEASIQLFHVRAGRVKGQRGWIVERTGDSEEELQELLQAFLIRFYT 312 Query: 296 DKP-------------------------------------CPENILLSEEAEETSLLEIS 318 D P+ +L+ + +++ Sbjct: 313 DAVELEEETNKEEENVIRRGVDQFSYVDEHLSSHQLRGSMIPKEVLVEIAPLDLEHTKVA 372 Query: 319 FFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLSTEISHQMILKDFTKKFA 374 + G V + VP +G+KR ++E NA + +++ + L++ + Sbjct: 373 LSELRGSLVDLRVPARGDKRALMETVHANAVETLRQHKLKRVGDLTARSAALQELQEALF 432 Query: 375 LPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRM 433 L P RIE D SHI G V +VV + K+ YR++ + +D A + Sbjct: 433 LEEAPLRIECIDISHIQGTDVVASLVVFEDGLPKKSDYRRYKIKDAAGDGHSNDVASIAE 492 Query: 434 VLERRFSQLIKNEENLNFHPK-----------KQEYSFPSWPDVVILDGGKGQLSAAQGV 482 V+ RRF + K+ + + + F P + I+DGG Q++AA + Sbjct: 493 VVRRRFIRHHKDRLTVPEAEEFDGSTFTDETVEHSKRFAYPPQLFIVDGGSPQVAAADAI 552 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 ++L V N + ++ IAK + E + + E ++L +Y +Q++RDEAHRFAI Sbjct: 553 FEELGV-NDVALVGIAKRLE-----ELWIPQDDEPVILPRNSQAMYLVQQIRDEAHRFAI 606 Query: 543 TTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 HR++R K S LD I G+G R+ L++ FG+VK + +S E + +++G ++A Sbjct: 607 AFHRQQRSKRMRTSALDNIKGLGQTRRTELVKHFGSVKKLKAASVEEITAVKGFGPQLAQ 666 Query: 602 KIYNHFHKN 610 +++ Sbjct: 667 NVFDALRAE 675 >gi|16800266|ref|NP_470534.1| excinuclease ABC subunit C [Listeria innocua Clip11262] gi|32130305|sp|Q92CH5|UVRC_LISIN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|16413656|emb|CAC96428.1| uvrC [Listeria innocua Clip11262] Length = 603 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 181/622 (29%), Positives = 301/622 (48%), Gaps = 45/622 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY + + + ++ +I + + VT + Sbjct: 13 LPDQPGCYLMKDRQGTIIYVGKAKVLKNRVRSYFSGTHDS-KTQRLVQEIVDFEYIVTSS 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 VEALLLE N+IK+ PRFNI L+DDK++P+I IT+ + P L R +G YFGP+ Sbjct: 72 NVEALLLEINLIKKHDPRFNIRLKDDKTYPFIKITN-ERHPRLIITRQVKKDKGKYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A + L R + LR C+ + CL + + +C PC ++ + KY E Sbjct: 131 PNVYAANEVKRILDRLYPLRKCSTLP----NKVCLYYHLGQCLAPCVFDVEASKYKEMQD 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E FL+GG +K + + M +A ++E A RD++ A+ N Sbjct: 187 EIVAFLNGGYKTVKNDLMKKMQEAAENMEFEKAGEFRDQINAIETTMEKQKMTMNDFVDR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +++ + + P+ Sbjct: 247 DVFGYAIDKGWMCVQVFFIRQGKLIERDVSQFPFYNDADEDFLTFIGQFYQKANHIPPKE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS----T 358 I L ++ + ++ + KI VP++G K+++++ A NA + +K Sbjct: 307 IYLPDDVDSEAVQAVVP------DTKIIVPQRGNKKELVKLAYKNAKIALNEKFMLLERN 360 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E ++ + +P R+E +DNS+I G V MV + KN YRK+ + Sbjct: 361 EERTVGAVERLGEAMGIPTPS-RVEAFDNSNIHGTDPVSAMVTFLDGKPSKNDYRKYKIK 419 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD A MR V+ RR+ +++K PD++++DGGKGQ+ + Sbjct: 420 T--VEGPDDYATMREVIRRRYWRVLKEG--------------LPMPDLILIDGGKGQIDS 463 Query: 479 AQGVL-KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ VL +L ++ I + +AK K F E + L Y +QR++DE Sbjct: 464 AKDVLTNELGLD--IPVAGLAKDDKHRTSQ-LLFGDPLEIVPLERNSQEFYLLQRMQDEV 520 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R K S LD I G+GP RK+ LL+ FG++K + +S E + G+ Sbjct: 521 HRFAITFHRQLRSKTGFQSILDGIPGVGPGRKKKLLKHFGSMKKLKEASVEEIKEA-GVP 579 Query: 597 KKIACKIYNH---FHKNTSHTP 615 +A +++ H F++ +T Sbjct: 580 LNVAEEVHKHITAFNEKAKNTE 601 >gi|327393401|dbj|BAK10823.1| UvrABC system protein C UvrC [Pantoea ananatis AJ13355] Length = 588 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 211/606 (34%), Positives = 334/606 (55%), Gaps = 31/606 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D +G V+YVGKA +L+KR+ SY +N + + ++S I++I TVT TE EALLLE Sbjct: 1 MYDASGTVIYVGKAKDLKKRLTSYFRTNVGSRKTEALVSNIHHIDVTVTHTETEALLLEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK +PR+N+LLRDDKS+PYI ++ P L HR + +G YFGPF + AV +T Sbjct: 61 NYIKLYQPRYNVLLRDDKSYPYIFLS-SDVHPRLAMHRGAKHAKGEYFGPFPNGYAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193 + LQ+ F +R C +SV+R+RTRPCL +QI RC GPC +S E+Y + + FL+G Sbjct: 120 LALLQKVFPIRQCENSVYRNRTRPCLQYQIGRCLGPCVAGLVSEEEYAQQTDYVRLFLAG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NRMDCFSLYHNK 251 + + + R M A+ +E A RD++ A+ + + +D + ++ Sbjct: 180 KDDQVLNLLVRRMEDASHALRFEEAARLRDQIQAVRRVTEKQFVSNQGDDLDVIGVAYDA 239 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSE 307 +AC+ F G+ G+ ++F K +++ A+++ F+ QFY + P ILL Sbjct: 240 GMACLHVLFIRQGKVLGSRSYFPKVPADTDLAEVVQTFVGQFYLQGSEMRTLPGEILLDF 299 Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367 E LL S + G +V I +G++ + ++ A NA + +LS + L Sbjct: 300 TLPERELLSESLTELAGRRVNIQSKPRGDRARYLKLARTNAGSALKTRLSQHSTIHQRLT 359 Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427 + L I R+E +D SH MG + VV +NG ++ YR++N+ + DD Sbjct: 360 ALAEFLELDKIT-RMECFDISHTMGEQTIASCVVFDQNGPLRADYRRYNI--AGITPGDD 416 Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487 A M VL RR+ + I+ E+ PDV+++DGGKGQL+ A+ V +L+ Sbjct: 417 YAAMNQVLRRRYGKAIEEEK---------------IPDVILIDGGKGQLAQAKQVFAELD 461 Query: 488 V---ENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 V ++R ++ +AKG R AG+E F + +GE + L+ P L+ IQ +RD+AH AI+ Sbjct: 462 VSWDKSRPILLGVAKGTDRKAGLETLFFEAEGEGISLSPDAPALHVIQHIRDDAHNHAIS 521 Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HRK+R K S L+ I G+GP R++ LL+ G ++ + +S E +A++ GIS +A K Sbjct: 522 GHRKKRAKVKNTSALESIEGVGPKRRQQLLKYMGGLQPLMNASVEEIANVPGISHALAEK 581 Query: 603 IYNHFH 608 IY Sbjct: 582 IYYSLK 587 >gi|260550498|ref|ZP_05824708.1| EsvL protein [Acinetobacter sp. RUH2624] gi|260406413|gb|EEW99895.1| EsvL protein [Acinetobacter sp. RUH2624] Length = 602 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 196/611 (32%), Positives = 312/611 (51%), Gaps = 32/611 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + + PGVY+ML G +LYVGKA NL+ R+ SY + ++++I +I VT Sbjct: 18 NLTQLPGVYKMLGKEGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVARIYDIETLVTR 77 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFG 123 +E EALLLE N+IK+ +P +NI+LRDDKS+ YI ++ P + R Q G +FG Sbjct: 78 SETEALLLEQNLIKQHRPPYNIMLRDDKSYVYIFVSADKPYPRIASGRGKGKHQIGKFFG 137 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ S + T+ LQ+ F +R C ++ F R RPCL +QIKRCS PC G +S E Y E Sbjct: 138 PYPSAYSARDTLLVLQKLFNVRQCENTYFSQRKRPCLQYQIKRCSAPCVGLVSPEDYKED 197 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNR 241 V+ + +FL G L +++ M QA ++E A+ +RDRL+ L +Q Sbjct: 198 VNNSIRFLQGDTKELNQELIAKMEQAAADLEFEKAVFYRDRLSLLREVQAQQAVFKVKGE 257 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPC 299 D ++ + + C+Q G+ G ++F Q+LS F+ FY Sbjct: 258 ADILAIAYQAGVTCVQIMHVRNGRMLGGKSYFPDM-LGDDLGQMLSDFMANFYFQVADEV 316 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P ++++ + LE + +Q+G KV+I + + + +E A +N + +LS Sbjct: 317 PSELIVNTALPDRKELEEALAQQFGKKVQIKSNVRETRAEWLELAEMNVQHAIKGQLSNH 376 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + + P IE +D SH MG + + VV + G K YR+F + Sbjct: 377 LELNERFHQLEQVVGRPIDR--IECFDISHTMGEAPIASCVVFDQGGARKRDYRQFAIQD 434 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A MR L RR+ + + PD++++DGGKGQL A Sbjct: 435 --ITAGDDYAAMRQALTRRYKKAM-------------------LPDLLLIDGGKGQLHMA 473 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 V++ L ++ +I ++KG R G+E G + L + L+ IQ++RDEAHR Sbjct: 474 MEVMQDLGLDAF--MIGVSKGEGRKPGLETLHFTDGTKIQLPEDNKALHLIQQVRDEAHR 531 Query: 540 FAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAIT HR +R K+ + S L+ I G+GP R+R LL FG ++ + ++S + L + G+ + Sbjct: 532 FAITKHRAKRDKRRSTSVLEAIPGLGPKRRRDLLTHFGGIQGVLKASEKELTVVPGLGEV 591 Query: 599 IACKIYNHFHK 609 +A IY H+ Sbjct: 592 MARTIYKILHE 602 >gi|302518404|ref|ZP_07270746.1| excinuclease ABC, C subunit [Streptomyces sp. SPB78] gi|302427299|gb|EFK99114.1| excinuclease ABC, C subunit [Streptomyces sp. SPB78] Length = 897 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 181/623 (29%), Positives = 303/623 (48%), Gaps = 38/623 (6%) Query: 23 LYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLK 81 +YVGKA +L++R+ +Y R M++ ++ +TV TEVEAL LE + IK Sbjct: 2 IYVGKAKSLRQRLANYFQDLAGLHPRTRTMVTTAASVEWTVVSTEVEALQLEYSWIKEYD 61 Query: 82 PRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRT 141 PRFN+ RDDKS+PY+ +T + P R + YFGP+ A+ T++ L R Sbjct: 62 PRFNVKYRDDKSYPYLAVTMNEEFPRAQVMRGAKRKGVRYFGPYGHAWAIRDTVDLLLRV 121 Query: 142 FFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNL 198 F +R+C+ VF++ RPCLL I +CS PC G IS E + + + F++G + Sbjct: 122 FPVRTCSAGVFKNAARTGRPCLLGYIDKCSAPCVGRISPEDHRDLAEDFCHFMAGHTGHY 181 Query: 199 KEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRMDCFSLYHNKNLAC 255 ++ M +A +YE A RD + AL+ + + D +L ++ A Sbjct: 182 LRRLEERMTEAAEDMEYERAARLRDDIGALTRAMEKSAVVLADATDADLIALAQDELEAA 241 Query: 256 IQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK---PCPENILLSEEAEET 312 +Q G+ RG + T A ++ + L+Q Y ++ P+ +L+ + Sbjct: 242 VQIFHVRGGRVRGQRGWVTDKVEAVTTADLVEHALQQLYGEERGDAVPKEVLVPALPDPV 301 Query: 313 SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS----HQMILKD 368 ++ ++ G +V + VP++G+KR ++E NA +S + S L++ Sbjct: 302 QPVQEWLSERRGAQVSLRVPQRGDKRALMETVERNAQQSLALHKTKRASDLTTRSRALEE 361 Query: 369 FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDC 428 L +P RIE YD SH+ G V MVV + K++YR+F + + QDD Sbjct: 362 IAAALDLDGVPLRIECYDISHLQGDDVVASMVVFEDGLARKSEYRRFQIKG--FQGQDDV 419 Query: 429 AMMRMVLERRFSQLIKNE---------------ENLNFHPKKQEYSFPSWPDVVILDGGK 473 M V+ RRF + + E + F P ++++DGG+ Sbjct: 420 RSMHEVITRRFRRYLAERERTGEWTEEELDGPVEPGGLDEDGRPKRFAYPPQLLVVDGGQ 479 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 Q++AA+ L +L +++ + + +AK + E + + + +VL LY +QR+ Sbjct: 480 PQVAAARRALDELGIDD-VAVCGLAKRLE-----EVWVPGEEDPVVLPRSSEGLYLLQRV 533 Query: 534 RDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDEAHRFAIT R +R K PLDE+ G+G RK+ LL+ FG+VK + ++ E + + Sbjct: 534 RDEAHRFAITYQRSKRAKRFRAGPLDEVPGLGQTRKQALLKHFGSVKKLRAATIEQICEV 593 Query: 593 EGISKKIACKIYNHFHKNTSHTP 615 GI ++ A I F ++ P Sbjct: 594 PGIGRRTAETILATFARSEPGAP 616 >gi|256965207|ref|ZP_05569378.1| excinuclease ABC [Enterococcus faecalis HIP11704] gi|307273310|ref|ZP_07554556.1| excinuclease ABC subunit C [Enterococcus faecalis TX0855] gi|307277457|ref|ZP_07558549.1| excinuclease ABC subunit C [Enterococcus faecalis TX2134] gi|256955703|gb|EEU72335.1| excinuclease ABC [Enterococcus faecalis HIP11704] gi|306505722|gb|EFM74900.1| excinuclease ABC subunit C [Enterococcus faecalis TX2134] gi|306510295|gb|EFM79319.1| excinuclease ABC subunit C [Enterococcus faecalis TX0855] Length = 598 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 184/616 (29%), Positives = 311/616 (50%), Gaps = 41/616 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY ++ T + ++S+I++ + VT + Sbjct: 12 LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFRGSHDT-KTERLVSEIDDFEYIVTES 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EALLLE N+I + P++NI+L+DDK++P+I IT+ K P L R + YFGP+ Sbjct: 71 NIEALLLEINLIHKNNPKYNIMLKDDKTYPFIKITN-EKYPRLMITRKVLKDKALYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 V+A +T L R F LR C + PCL + + +C P ++ + Y + V Sbjct: 130 PDVNAANETKKLLDRLFPLRKCN----PSQKTPCLYYHLGQCLCPYAFDVDPQVYKDMVE 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNRM 242 E K FLSGG+ +++++ M A ++E A RD++ A+ + + Sbjct: 186 EIKGFLSGGHTEIQDRLQEKMAYAAAHMEFEKAAEFRDQIKAIETVMTRQKMTNVDLIDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +++ A + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRQGKLIERDVSIFPFYDDASEAFLTFIGQFYQENEHFVPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 +L+ ++ ++ S+ + K + P++GEK+K+++ A NA + + Sbjct: 306 VLIPDDIDKESVEALLATK-------VLQPQRGEKKKLVKLASKNAAVALNEKFDLIVRK 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + ++ +P RIE +DNS+IMG + V MVV + KN+YRK+ + Sbjct: 359 QERTIGAVEKLGNAMNIPAP-IRIEAFDNSNIMGTNPVSAMVVFIDGRPAKNEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD A MR V+ RR+S+++K +PD++++DGGKGQ+ Sbjct: 418 T--VQGPDDYASMREVIYRRYSRVLKEG--------------LPFPDLILIDGGKGQVDV 461 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ VL + I + +AK K E F E + L + +QR++DE H Sbjct: 462 AKDVLAN-QLGVDIPVAGLAKNDKHKTS-ELLFGPDLEVVPLERNSQEFFLLQRIQDEVH 519 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ R K ++ S LD I G+GP RK+ LL+ F ++K I+ +S E L G+ + Sbjct: 520 RFAITFHRQLRSKNSFASKLDNIEGLGPKRKKNLLKEFKSLKNITAASVEELRKA-GLPE 578 Query: 598 KIACKIYNHFHKNTSH 613 +A +Y H H+ T+ Sbjct: 579 TVAKNVYRHLHQETTS 594 >gi|158334297|ref|YP_001515469.1| excinuclease ABC subunit C [Acaryochloris marina MBIC11017] gi|189038013|sp|B0C2T9|UVRC_ACAM1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|158304538|gb|ABW26155.1| excinuclease ABC, C subunit [Acaryochloris marina MBIC11017] Length = 626 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 207/620 (33%), Positives = 310/620 (50%), Gaps = 28/620 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFT 61 +++P PGVY M D +LY+GK+ L+ R++SY +H RI M+ Q+ +I F Sbjct: 21 LKEIPPEPGVYFMRDANDDILYIGKSKKLRNRVRSYFRQIQDHPPRIELMVHQVADIEFI 80 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQG 119 VT TE EAL LEAN+IK+ +P FN+LL+DDK +PY+ +T P ++ R Q Sbjct: 81 VTDTEAEALALEANLIKQHQPHFNVLLKDDKKYPYLCVTWSQTYPRIFITRKRRLGKAQD 140 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 Y+GP+ V + +T+ ++R F LR +F + RPCL ++I RC G C I+ E Sbjct: 141 KYYGPYVDVWQLRQTLRLVKRLFPLRQRRKPLF--KDRPCLNYEIGRCPGVCQALITPEA 198 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + + + G L ++ M QA ++E A RD++ L + Sbjct: 199 YRQILQKVVMIFQGRTSELINTLSLQMEQAAEDLNFEQAARLRDQIKGLQGLGVDQKVAL 258 Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D +L + +AC+Q G+ G F S + IL + L Y Sbjct: 259 PDDTVSRDAIALAADDQIACVQLFQIRSGRLVGRLGFMADAQSG-SLGMILQHVLEAHYG 317 Query: 296 DKPC---PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 P IL+ E ET LL ++ KV IT P++ K ++IE NA Sbjct: 318 SAEPVELPLEILVQTELPETELLASYLSQRKERKVSITCPQRQIKAELIEMVERNAQYEL 377 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + L+D + LP +P RIE YD SHI G AV VV + K Y Sbjct: 378 ARTQKSRDRTLNALQDLAELLDLPELPHRIECYDISHIQGSDAVASQVVFIDGLPAKQHY 437 Query: 413 RKFNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 R++ + +VK D A + VL RRF Q + P++ WPD+V++D Sbjct: 438 RRYKIRNPNVKAGHSDDFASLAEVLHRRFRQY-------HLSPEQPRQGTSDWPDLVVID 490 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQLSA L K+ V + IIS+AK + E F + + L + P + I Sbjct: 491 GGKGQLSAVLESLTKIEVVEDLQIISLAKQRE-----EIFQPGESQPLPTDPEQPGVQLI 545 Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 +RLRDEAHRFAI+ HRK+R ++ S LD+I G+G R++ LL +F ++ I +SPE L Sbjct: 546 RRLRDEAHRFAISFHRKKRLERMRRSRLDDIPGLGHHRQKELLAAFRSIDYIREASPEQL 605 Query: 590 ASIEGISKKIACKIYNHFHK 609 ++ I ++A KIY++FH Sbjct: 606 KAVPTIGPQLAQKIYDYFHP 625 >gi|322391389|ref|ZP_08064859.1| excinuclease ABC subunit C [Streptococcus peroris ATCC 700780] gi|321145815|gb|EFX41206.1| excinuclease ABC subunit C [Streptococcus peroris ATCC 700780] Length = 621 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 171/620 (27%), Positives = 293/620 (47%), Gaps = 41/620 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 21 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 79 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 80 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 138 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + Sbjct: 139 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICQKDETYFK 194 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G + + + + M A ++E A +RD + A+ ++ + Sbjct: 195 YMAQEVSDFLKGQDDKIIDDLKEKMAVAAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 254 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 255 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHL 314 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P IL+ ++ +E ++ + K P++GEK++++ A+ NA + Sbjct: 315 VPNEILIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 367 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 368 LEKSVEKTQGAIENLGRLLKIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 426 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ ++ + PD++++DGG+G Sbjct: 427 YKIKT--VVGPDDYASMREVIRRRYGRVQRDG--------------LTPPDLIVIDGGQG 470 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L+ + +QR++ Sbjct: 471 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELSRNSQEFFLLQRIQ 528 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+ L++ F ++ I +S + + ++ Sbjct: 529 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKYFKSLTKIKEASVDEIVAV- 587 Query: 594 GISKKIACKIYNHFHKNTSH 613 GI + +A +++H + Sbjct: 588 GIPRAVAEAVHHHLNPEVDS 607 >gi|255325035|ref|ZP_05366141.1| excinuclease ABC subunit C [Corynebacterium tuberculostearicum SK141] gi|255297600|gb|EET76911.1| excinuclease ABC subunit C [Corynebacterium tuberculostearicum SK141] Length = 691 Score = 505 bits (1300), Expect = e-140, Method: Composition-based stats. Identities = 182/685 (26%), Positives = 314/685 (45%), Gaps = 82/685 (11%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D RV+YVGKA NL+ R+ +Y R M+ N++ +TV Sbjct: 13 TIPTDPGVYKFRDENRRVIYVGKAKNLRARLSNYFQDITQLHPRTRQMVLTANSVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +EVEAL LE IKR P FN++ RDDK++P + ++ +P + +R YFG Sbjct: 73 ASEVEALQLEYTWIKRFDPHFNVMYRDDKTYPMLAVSVGETVPRAFFYRGPRRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ AV ++++ L R F +R+C+ V+ RPCLL I +C PC G +S E + Sbjct: 133 PYSHAWAVRESLDLLTRVFPMRTCSKGVYNRHERLGRPCLLGYIGKCDAPCIGRVSKEDH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E V++ F++G +++ K+ ++M QA ++E A RD L A+ I ++ Sbjct: 193 RETVNDLVSFMNGNTGSVRRKLTQDMEQAAENLEFERAARLRDDLGAIDKIMEQQAVVFT 252 Query: 241 R---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ------------- 284 D + ++ A +Q G+ RG + ++ + +++ Sbjct: 253 DGTDADLIAFNSDELEAAVQIFHVRDGRIRGQRGWVVERAGDQASSEPLEEGQPDPALPA 312 Query: 285 ILSYFLRQFYTD-----------------------------------KPCPENILLSEEA 309 ++ FL QFY+D + P IL+ Sbjct: 313 LVQNFLIQFYSDAVEREKQEAREDAALAADVKRRGVDQESHMKSRRVQVIPRQILVQALP 372 Query: 310 EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE----ISHQMI 365 +E + + G +V + VP++G+K++++ NA Q + Sbjct: 373 DEPEQVVALLEELRGAQVDLRVPQRGDKKQLMATVEKNAKEQLRQHKLKRVGDLTARSAA 432 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 L+D + + P RIE D SHI G V +VV + K+ YR++ + + Sbjct: 433 LQDIQEALGMEQAPLRIECTDISHIQGTDVVASLVVFEDGLPKKSDYRRYRIKEAAGDGR 492 Query: 426 -DDCAMMRMVLERRFSQLIKN---------------EENLNFHPKKQEYSFPSWPDVVIL 469 DD + + RRF + ++ EE + + F P + I+ Sbjct: 493 SDDVGSIAEITRRRFKRHKQDKLAHPDEEVEESSFAEEKVAEESAEAGRRFAYPPQLFIV 552 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGG Q++AAQ V +L + + +T++ +AK + E + E ++L L+ Sbjct: 553 DGGAPQVAAAQEVFDELGIVD-VTLVGLAKRLE-----EIWVPGDDEPVILPRNSQALFL 606 Query: 530 IQRLRDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 +Q++RDEAHRFAIT HR++R K S LD + G+GP R+ L++ FG+VK + ++ E Sbjct: 607 LQQIRDEAHRFAITYHRQQRSKRMRSSVLDSVPGLGPQRRTDLVKHFGSVKKLKAATVEE 666 Query: 589 LASIEGISKKIACKIYNHFHKNTSH 613 + + G K+A +Y H + + Sbjct: 667 ICEVNGFGPKLAQTVYESLHDSAGN 691 >gi|295695298|ref|YP_003588536.1| excinuclease ABC, C subunit [Bacillus tusciae DSM 2912] gi|295410900|gb|ADG05392.1| excinuclease ABC, C subunit [Bacillus tusciae DSM 2912] Length = 591 Score = 505 bits (1300), Expect = e-140, Method: Composition-based stats. Identities = 185/611 (30%), Positives = 303/611 (49%), Gaps = 42/611 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PGVY M D GRV+YVGKA L+ R++SY + H + ++S+I + + VT Sbjct: 15 LPGKPGVYLMKDSEGRVIYVGKAKTLKNRVRSYFTGS-HDAKTQKLVSEIRDFEYIVTDN 73 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 VEAL+LE N+IK+ +P FNI+LRDDKS+PYI IT + + P L R + SYFGP+ Sbjct: 74 AVEALILECNLIKQHQPPFNIMLRDDKSYPYIKIT-REEHPRLEIVRRMAKDGASYFGPY 132 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T L R + LR C + + + CL + I +C PC + E+Y Sbjct: 133 PNSGSAMETKRLLDRLYPLRKCRNL----KKKVCLYYHIGQCLAPCEYPVDPERYEAIRK 188 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 + +FL+GG+ + E++ R M++ +E A RD + + + ++ Sbjct: 189 DIGRFLNGGHGEIVEELERRMHEEAEALRFERAKELRDLIQHIGRVMEKQKIVFQDQVDR 248 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F + + C+Q F G+ SY + ++ + P+ Sbjct: 249 DVFGFFAERGRMCVQVFFIRGGKLIERAVQIFPF-YNDPLEDFGSYVAQFYFEETERPKE 307 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 + L E E L E ++ VP++G KR+++E A NA + +KL+ E Sbjct: 308 VYLPEGVETDVLGE-------WLGARVVVPRRGPKRQLVEMACENARIALEEKLALEERD 360 Query: 363 QMI----LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 +++ A+ RIE +DNS++ G V MVV + K +YRKF + Sbjct: 361 LERTVGAVRELGDVLAIAAPR-RIEAFDNSNLQGTDPVAAMVVFVDGQPAKKEYRKFKIK 419 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD A MR V+ RR++++++ + PD++++DGG+GQ+ A Sbjct: 420 T--VQGPDDYASMREVIRRRYTRVLREK--------------LPLPDLIVVDGGRGQIGA 463 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A VL+ ++ I + +AK + + F + ++ Y +QR+++E H Sbjct: 464 ALEVLQD-ELDLEIPVCGLAKDDRHRT-DQLFLGDDPVPVPIDRHSQGFYLLQRIQEEVH 521 Query: 539 RFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ R K+ +S LD+I GIG RKR LLQ FG+V+ I ++S E GI Sbjct: 522 RFAITFHRQTRGKRVMHSVLDDIPGIGEKRKRKLLQHFGSVEAIRQASLEEFRQA-GIGD 580 Query: 598 KIACKIYNHFH 608 ++A +I Sbjct: 581 RLAEQILEALK 591 >gi|89901026|ref|YP_523497.1| excinuclease ABC subunit C [Rhodoferax ferrireducens T118] gi|119367823|sp|Q21W87|UVRC_RHOFD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|89345763|gb|ABD69966.1| Excinuclease ABC subunit C [Rhodoferax ferrireducens T118] Length = 671 Score = 505 bits (1300), Expect = e-140, Method: Composition-based stats. Identities = 212/643 (32%), Positives = 324/643 (50%), Gaps = 46/643 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PGVY+ D G VLYVGKA NL+KR+ SY N+ RI HM+S+I + TV + Sbjct: 35 LPPLPGVYRYFDFDGAVLYVGKAINLKKRVSSYFQKNHGGTRIGHMVSKIVRLETTVVRS 94 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITD-------KHKIPALYKHRDSSTIQ 118 E EALLLE N+IK L P++NIL RDDKS+PY+ +T P + +R + + Sbjct: 95 EAEALLLENNLIKTLNPKYNILFRDDKSYPYLKMTGASSSSNPGTSFPRVSYYRGAVEKK 154 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV++ I +Q+ F LR+C D VF +RTRPCLL+QIKRCS PC G IS+ Sbjct: 155 HQYFGPYPSAWAVKEAILLMQKVFHLRTCEDPVFNNRTRPCLLYQIKRCSAPCVGHISAA 214 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y + V A++FL G + E + M K ++E A R+++AALS++ + Sbjct: 215 DYAQDVANAERFLRGDARQVMEALEARMMAHAEKLEFEQAAELRNQVAALSNVLHQQSVD 274 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST-------------- 281 +D ++ AC+ G++ G +F ++T Sbjct: 275 NVADRDVDILAVKVQGGRACVNLAMVRGGRHLGDRPYFPAHVEDATEIYNAGGFEEAVED 334 Query: 282 ----------NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITV 331 Q+L F+ Q Y + P P +++S + L ++ Q G KV Sbjct: 335 STTAPPVPSVETQVLEAFVAQHYLNVPVPPTLIVSAPVNKQLLEALAI--QSGVKVTAVH 392 Query: 332 PKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK---DFTKKFALPHIPKRIEIYDNS 388 + ++R +E A NA + LS E S Q + + R+E +D S Sbjct: 393 QPREQRRVWLEMAQTNAGLQLARLLSEEGSQQARTRALAEALDLALDDLDALRVECFDIS 452 Query: 389 HIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEEN 448 H G + VV + +YR++N++ + DD A MR VL RR+ +L Sbjct: 453 HTAGEATQASCVVFAHHKMQNAEYRRYNIND--ITPGDDYAAMRQVLLRRYGKL-AETLR 509 Query: 449 LNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGME 508 + PD+V++DGG+GQ+S A+ V ++L ++ + I+ + KG R G+E Sbjct: 510 EAQQTGQMPAGTGRLPDLVLVDGGRGQVSMAREVFEQLGLDLSL-IVGVEKGEGRKVGLE 568 Query: 509 KFFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYS--PLDEINGIGP 565 + G + L L + ++RDEAHRFAIT R +R K L+EI GIGP Sbjct: 569 ELVFADGREKVYLGKDSAALMLVAQIRDEAHRFAITGMRAKRAKVRVDGGKLEEIPGIGP 628 Query: 566 LRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 R+ LLQ FG V+ ++ + E +A++ GIS+++A +IY H Sbjct: 629 KRRSKLLQRFGGVRGVALAGAEDIATVAGISRELAEEIYRALH 671 >gi|307288099|ref|ZP_07568109.1| excinuclease ABC subunit C [Enterococcus faecalis TX0109] gi|306500835|gb|EFM70153.1| excinuclease ABC subunit C [Enterococcus faecalis TX0109] gi|315164286|gb|EFU08303.1| excinuclease ABC subunit C [Enterococcus faecalis TX1302] gi|315166621|gb|EFU10638.1| excinuclease ABC subunit C [Enterococcus faecalis TX1341] Length = 598 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 185/616 (30%), Positives = 311/616 (50%), Gaps = 41/616 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY ++ T + ++S+I++ + VT + Sbjct: 12 LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFRGSHDT-KTERLVSEIDDFEYIVTES 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EALLLE N+I + P++NI+L+DDK++P+I IT+ K P L R + YFGP+ Sbjct: 71 NIEALLLEINLIHKNNPKYNIMLKDDKTYPFIKITN-EKYPRLMITRKVLKDKALYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 V+A +T L R F LR C + PCL + + +C P ++ + Y + V Sbjct: 130 PDVNAANETKKLLDRLFPLRKCN----PSQKTPCLYYHLGQCLCPYAFDVDPQVYKDMVE 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNRM 242 E K FLSGG+ +++++ M A ++E A RD++ A+ + + Sbjct: 186 EIKGFLSGGHTEIQDRLQEKMAYAAAHMEFEKAAEFRDQIKAIETVMTRQKMTNVDLIDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +++ A + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRQGKLIERDVSIFPFYDDASEAFLTFIGQFYQENEHFVPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 +L+ ++ ++ S+ + K I P++GEK+K+++ A NA + + Sbjct: 306 VLIPDDIDKESVEALLATK-------ILQPQRGEKKKLVKLASKNAAVALNEKFDLIVRK 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + ++ +P RIE +DNS+IMG + V MVV + KN+YRK+ + Sbjct: 359 QERTIGAVEKLGNAMNIPAP-IRIEAFDNSNIMGTNPVSAMVVFIDGRPAKNEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD A MR V+ RR+S+++K +PD++++DGGKGQ+ Sbjct: 418 T--VQGPDDYASMREVIYRRYSRVLKEG--------------LPFPDLILIDGGKGQVDV 461 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ VL + I + +AK K E F E + L + +QR++DE H Sbjct: 462 AKDVLAN-QLGVDIPVAGLAKNDKHKTS-ELLFGPDLEVVPLERNSQEFFLLQRIQDEVH 519 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ R K ++ S LD I G+GP RK+ LL+ F ++K I+ +S E L G+ + Sbjct: 520 RFAITFHRQLRSKNSFASKLDNIEGLGPKRKKNLLKEFKSLKNITAASVEELRKA-GLPE 578 Query: 598 KIACKIYNHFHKNTSH 613 +A +Y H H+ T+ Sbjct: 579 TVAKNVYRHLHQETTS 594 >gi|160898318|ref|YP_001563900.1| excinuclease ABC subunit C [Delftia acidovorans SPH-1] gi|160363902|gb|ABX35515.1| excinuclease ABC, C subunit [Delftia acidovorans SPH-1] Length = 650 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 206/642 (32%), Positives = 317/642 (49%), Gaps = 46/642 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PGVY+ D AG +LYVGKA NL++R+ SY N+ RI HM+ +I + TV + Sbjct: 16 LPGLPGVYRYFDAAGTLLYVGKAINLKRRVSSYFTKNHGGTRIGHMVGKIARMETTVVRS 75 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITD------------KHKIPALYKHRD 113 E EALLLE N+IK P++NIL RDDKS+PY+ IT + + +R Sbjct: 76 EAEALLLENNLIKTQHPKYNILFRDDKSYPYLKITGVAARDGQAGEPAHQRFARMAYYRG 135 Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 + + YFGP+ + AV+++I LQ+ F LR+C D+VF +R+RPCLL+QIKRCSGPC Sbjct: 136 AVDKRHRYFGPYPNAWAVKESIQLLQKVFRLRTCEDTVFANRSRPCLLYQIKRCSGPCVD 195 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 IS E Y V A+ L G L ++ M + + +YE A R+++ ALS + + Sbjct: 196 LISPEAYALDVRNAEAMLRGETQELLRQLEARMMEHAGRMEYEQAAEVRNQMTALSRVLH 255 Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST--------- 281 +D ++ AC+ G++ G +F ++ Sbjct: 256 QQVIETADDRDVDILAVKVQGGRACVNLAMVRGGRHLGDRPYFPANLGDAASVYAGEEEA 315 Query: 282 ---------NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVP 332 +L F+ Q YT P +++S ++ L +Q G ++ Sbjct: 316 NLAESARPVEDIVLEAFIAQHYTGVAVPPVLIVSHPVDKKLLA--LLSEQGGVRITAVQQ 373 Query: 333 KQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKR---IEIYDNSH 389 + ++R +E A NA + L+ E S Q + + L IE +D SH Sbjct: 374 PREQRRIWLEMAQKNADIQMARLLAEEGSQQARTRALVEALDLACENLDELTIECFDISH 433 Query: 390 IMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL 449 G + VV + ++YR+FN+ + DD A MR VL RR+S++ + + Sbjct: 434 TAGEATQASCVVFHHHKMQSSEYRRFNIEG--ITGGDDYAAMRQVLTRRYSRVAEAQREA 491 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 P PD+V++DGGKGQ+S A+ V ++L ++ I+ + KG R G+E+ Sbjct: 492 GGAELT--GKQPQLPDLVLVDGGKGQVSMAREVFEQLGLDVS-RIVGVEKGEGRKVGLEE 548 Query: 510 FFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--SPLDEINGIGPL 566 G + L L + ++RDEAHRFAIT R R K L+EI G+GP Sbjct: 549 LVFADGREKIYLGYDSAALMLVAQIRDEAHRFAITGMRAARAKVRVGGGKLEEIPGVGPK 608 Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LLQ FG V+ +S ++ E L S++GIS +A IY H Sbjct: 609 KRARLLQRFGGVRGVSEATVEDLCSVDGISAALAEDIYRALH 650 >gi|300784684|ref|YP_003764975.1| excinuclease ABC subunit C [Amycolatopsis mediterranei U32] gi|299794198|gb|ADJ44573.1| excinuclease ABC subunit C [Amycolatopsis mediterranei U32] Length = 632 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 186/630 (29%), Positives = 304/630 (48%), Gaps = 38/630 (6%) Query: 13 YQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTCTEVEALL 71 Y+ D RV+YVGKA +L+ R+ SY + R M++ ++ +TV TEVEAL Sbjct: 2 YKFRDATKRVIYVGKAKSLRSRLNSYFADLSGLHPRTRQMVTTAASVEWTVVATEVEALQ 61 Query: 72 LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAV 131 LE N IK PRFN+ RDDKS+P + +T + P L+ +R + YFGP+A A+ Sbjct: 62 LEYNWIKEFDPRFNVRYRDDKSYPVLAVTLNEEFPRLHVYRGARKKGVRYFGPYAHAWAI 121 Query: 132 EKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 +T++ L R F R+C+ VFR RPCLL I +CS PC G +S++++ + V + Sbjct: 122 RETLDLLLRVFPARTCSAGVFRRHGQIGRPCLLGYIDKCSAPCVGRVSADEHRDIVEDFC 181 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCF 245 FL+G + +++ M A+ + ++E A RD L AL + D Sbjct: 182 DFLAGKTDVMIKRLETEMAAASEELEFERAARLRDDLGALRRAMEKQAVVLGDGTDADVV 241 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP------- 298 + H+ A +Q G+ RG + + E ++ +FL QFY D+ Sbjct: 242 AFAHDDLEAAVQVFHVRGGRVRGQRGWVIDKAEEMDVPALVDHFLTQFYGDEAELDARDD 301 Query: 299 ------CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 P +L+ E + + G +V++ VP++G+K+ + E NA + Sbjct: 302 VDAGPVVPREVLVPELPADAEAVAEWLTGLRGSRVQLRVPQRGDKKALAETVQRNAGEAF 361 Query: 353 TQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 TQ + L + + AL P RIE D SHI G V +VV + Sbjct: 362 TQHKLRRAGDLTARSAALTELQEFLALDTAPLRIECIDISHIQGSDVVASLVVFEDGLAR 421 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPK-----KQEYSFPSW 463 K++YR+F L + D A + V+ RRF + +K + P + F Sbjct: 422 KSEYRRFALREAATEG--DVASIAEVVRRRFYRYLKETAEESSTPGLDPETGRPKKFAYP 479 Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMR 523 P+++++DG Q +AA VL +L + + I++I +AK + E + + ++L Sbjct: 480 PNLLVVDGAGPQATAAADVLAELGITD-ISVIGLAKRLE-----EVWLPADPDPVILPRT 533 Query: 524 DPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMIS 582 LY +QRLRDEAHRFAI HR++R K S LD + G+G R+ L++ FG+VK + Sbjct: 534 SEGLYLLQRLRDEAHRFAIAYHREKRSKRLVTSELDSVPGLGQARRTALIKHFGSVKKLK 593 Query: 583 RSSPETLASIEGISKKIACKIYNHFHKNTS 612 ++ E + ++ G ++ A + + Sbjct: 594 QARIEEIEAVPGFGRRTAEAVVAALAGESG 623 >gi|255975936|ref|ZP_05426522.1| excinuclease ABC subunit C [Enterococcus faecalis T2] gi|307278478|ref|ZP_07559552.1| excinuclease ABC subunit C [Enterococcus faecalis TX0860] gi|255968808|gb|EET99430.1| excinuclease ABC subunit C [Enterococcus faecalis T2] gi|306504821|gb|EFM74017.1| excinuclease ABC subunit C [Enterococcus faecalis TX0860] Length = 598 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 184/616 (29%), Positives = 310/616 (50%), Gaps = 41/616 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY ++ T + ++S+I++ + VT + Sbjct: 12 LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFRGSHDT-KTERLVSEIDDFEYIVTES 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EALLLE N+I + P++NI+L+DDK++P+I IT+ K P L R + YFGP+ Sbjct: 71 NIEALLLEINLIHKNNPKYNIMLKDDKTYPFIKITN-EKYPRLMITRKVLKDKALYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 V+A +T L R F LR C + PCL + + +C P ++ + Y + V Sbjct: 130 PDVNAANETKKLLDRLFPLRKCN----PSQKTPCLYYHLGQCLCPYAFDVDPQVYKDMVE 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNRM 242 E K FLSGG+ +++++ M A ++E A RD++ A+ + + Sbjct: 186 EIKGFLSGGHTEIQDRLQEKMAYAAAHMEFEKAAEFRDQIKAIETVMTRQKMTNVDLIDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +++ A + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRQGKLIERDVSIFPFYDDASEAFLTFIGQFYQENEHFVPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 +L+ ++ ++ S+ + K I P++GEK+K+++ A NA + + Sbjct: 306 VLIPDDIDKESVEALLATK-------ILQPQRGEKKKLVKLASKNAAVALNEKFDLIVRK 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + ++ +P RIE +DNS+IMG + V MVV + KN+YRK+ + Sbjct: 359 QERTIGAVEKLGNAMNIPVP-IRIEAFDNSNIMGTNPVSAMVVFIDGRPAKNEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD A MR V+ RR+S+++K +PD++++DGGKGQ+ Sbjct: 418 T--VQGPDDYASMREVIYRRYSRVLKEG--------------LPFPDLILIDGGKGQVDV 461 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 + VL + I + +AK K E F E + L + +QR++DE H Sbjct: 462 VKDVLAN-QLGVDIPVAGLAKNDKHKTS-ELLFGPNLEVVPLERNSQEFFLLQRIQDEVH 519 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ R K ++ S LD I G+GP RK+ LL+ F ++K I+ +S E L G+ + Sbjct: 520 RFAITFHRQLRSKNSFASKLDNIEGLGPKRKKNLLKEFKSLKNITAASVEELRKA-GLPE 578 Query: 598 KIACKIYNHFHKNTSH 613 +A +Y H H+ T+ Sbjct: 579 TVAKNVYRHLHQETTS 594 >gi|29375973|ref|NP_815127.1| excinuclease ABC subunit C [Enterococcus faecalis V583] gi|227518671|ref|ZP_03948720.1| excinuclease ABC subunit C [Enterococcus faecalis TX0104] gi|227553202|ref|ZP_03983251.1| excinuclease ABC subunit C [Enterococcus faecalis HH22] gi|229545909|ref|ZP_04434634.1| excinuclease ABC subunit C [Enterococcus faecalis TX1322] gi|229550103|ref|ZP_04438828.1| excinuclease ABC subunit C [Enterococcus faecalis ATCC 29200] gi|255972881|ref|ZP_05423467.1| excinuclease ABC subunit C [Enterococcus faecalis T1] gi|256618986|ref|ZP_05475832.1| excinuclease ABC [Enterococcus faecalis ATCC 4200] gi|256853041|ref|ZP_05558411.1| excinuclease ABC subunit C [Enterococcus faecalis T8] gi|256958897|ref|ZP_05563068.1| excinuclease ABC [Enterococcus faecalis DS5] gi|257078928|ref|ZP_05573289.1| excinuclease ABC [Enterococcus faecalis JH1] gi|257086830|ref|ZP_05581191.1| excinuclease ABC [Enterococcus faecalis D6] gi|257089799|ref|ZP_05584160.1| excinuclease ABC subunit C [Enterococcus faecalis CH188] gi|257419216|ref|ZP_05596210.1| excinuclease ABC subunit C [Enterococcus faecalis T11] gi|257422705|ref|ZP_05599695.1| excinuclease ABC subunit C [Enterococcus faecalis X98] gi|294780086|ref|ZP_06745462.1| excinuclease ABC, C subunit [Enterococcus faecalis PC1.1] gi|300860703|ref|ZP_07106790.1| excinuclease ABC, C subunit [Enterococcus faecalis TUSoD Ef11] gi|307271104|ref|ZP_07552387.1| excinuclease ABC subunit C [Enterococcus faecalis TX4248] gi|307291394|ref|ZP_07571278.1| excinuclease ABC subunit C [Enterococcus faecalis TX0411] gi|312900673|ref|ZP_07759970.1| excinuclease ABC subunit C [Enterococcus faecalis TX0470] gi|312904149|ref|ZP_07763317.1| excinuclease ABC subunit C [Enterococcus faecalis TX0635] gi|312952410|ref|ZP_07771285.1| excinuclease ABC subunit C [Enterococcus faecalis TX0102] gi|81585291|sp|Q835H1|UVRC_ENTFA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|29343435|gb|AAO81197.1| excinuclease ABC, subunit C [Enterococcus faecalis V583] gi|227073851|gb|EEI11814.1| excinuclease ABC subunit C [Enterococcus faecalis TX0104] gi|227177675|gb|EEI58647.1| excinuclease ABC subunit C [Enterococcus faecalis HH22] gi|229304807|gb|EEN70803.1| excinuclease ABC subunit C [Enterococcus faecalis ATCC 29200] gi|229308977|gb|EEN74964.1| excinuclease ABC subunit C [Enterococcus faecalis TX1322] gi|255963899|gb|EET96375.1| excinuclease ABC subunit C [Enterococcus faecalis T1] gi|256598513|gb|EEU17689.1| excinuclease ABC [Enterococcus faecalis ATCC 4200] gi|256711500|gb|EEU26538.1| excinuclease ABC subunit C [Enterococcus faecalis T8] gi|256949393|gb|EEU66025.1| excinuclease ABC [Enterococcus faecalis DS5] gi|256986958|gb|EEU74260.1| excinuclease ABC [Enterococcus faecalis JH1] gi|256994860|gb|EEU82162.1| excinuclease ABC [Enterococcus faecalis D6] gi|256998611|gb|EEU85131.1| excinuclease ABC subunit C [Enterococcus faecalis CH188] gi|257161044|gb|EEU91004.1| excinuclease ABC subunit C [Enterococcus faecalis T11] gi|257164529|gb|EEU94489.1| excinuclease ABC subunit C [Enterococcus faecalis X98] gi|294452838|gb|EFG21264.1| excinuclease ABC, C subunit [Enterococcus faecalis PC1.1] gi|295112924|emb|CBL31561.1| Excinuclease ABC subunit C [Enterococcus sp. 7L76] gi|300849742|gb|EFK77492.1| excinuclease ABC, C subunit [Enterococcus faecalis TUSoD Ef11] gi|306497625|gb|EFM67158.1| excinuclease ABC subunit C [Enterococcus faecalis TX0411] gi|306512602|gb|EFM81251.1| excinuclease ABC subunit C [Enterococcus faecalis TX4248] gi|310629794|gb|EFQ13077.1| excinuclease ABC subunit C [Enterococcus faecalis TX0102] gi|310632625|gb|EFQ15908.1| excinuclease ABC subunit C [Enterococcus faecalis TX0635] gi|311292154|gb|EFQ70710.1| excinuclease ABC subunit C [Enterococcus faecalis TX0470] gi|315027353|gb|EFT39285.1| excinuclease ABC subunit C [Enterococcus faecalis TX2137] gi|315029972|gb|EFT41904.1| excinuclease ABC subunit C [Enterococcus faecalis TX4000] gi|315033808|gb|EFT45740.1| excinuclease ABC subunit C [Enterococcus faecalis TX0017] gi|315036893|gb|EFT48825.1| excinuclease ABC subunit C [Enterococcus faecalis TX0027] gi|315145719|gb|EFT89735.1| excinuclease ABC subunit C [Enterococcus faecalis TX2141] gi|315150621|gb|EFT94637.1| excinuclease ABC subunit C [Enterococcus faecalis TX0012] gi|315152571|gb|EFT96587.1| excinuclease ABC subunit C [Enterococcus faecalis TX0031] gi|315155850|gb|EFT99866.1| excinuclease ABC subunit C [Enterococcus faecalis TX0043] gi|315157983|gb|EFU02000.1| excinuclease ABC subunit C [Enterococcus faecalis TX0312] gi|315160194|gb|EFU04211.1| excinuclease ABC subunit C [Enterococcus faecalis TX0645] gi|315575539|gb|EFU87730.1| excinuclease ABC subunit C [Enterococcus faecalis TX0309B] gi|315577530|gb|EFU89721.1| excinuclease ABC subunit C [Enterococcus faecalis TX0630] gi|315580020|gb|EFU92211.1| excinuclease ABC subunit C [Enterococcus faecalis TX0309A] gi|323480640|gb|ADX80079.1| excinuclease ABC, C subunit [Enterococcus faecalis 62] gi|329571401|gb|EGG53088.1| excinuclease ABC, C subunit [Enterococcus faecalis TX1467] Length = 598 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 184/616 (29%), Positives = 311/616 (50%), Gaps = 41/616 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY ++ T + ++S+I++ + VT + Sbjct: 12 LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFRGSHDT-KTERLVSEIDDFEYIVTES 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EALLLE N+I + P++NI+L+DDK++P+I IT+ K P L R + YFGP+ Sbjct: 71 NIEALLLEINLIHKNNPKYNIMLKDDKTYPFIKITN-EKYPRLMITRKVLKDKALYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 V+A +T L R F LR C + PCL + + +C P ++ + Y + V Sbjct: 130 PDVNAANETKKLLDRLFPLRKCN----PSQKTPCLYYHLGQCLCPYAFDVDPQVYKDMVE 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNRM 242 E K FLSGG+ +++++ M A ++E A RD++ A+ + + Sbjct: 186 EIKGFLSGGHTEIQDRLQEKMAYAAAHMEFEKAAEFRDQIKAIETVMTRQKMTNVDLIDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +++ A + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRQGKLIERDVSIFPFYDDASEAFLTFIGQFYQENEHFVPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 +L+ ++ ++ S+ + K + P++GEK+K+++ A NA + + Sbjct: 306 VLIPDDIDKESVEALLATK-------VLQPQRGEKKKLVKLASKNAAVALNEKFDLIVRK 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + ++ +P RIE +DNS+IMG + V MVV + KN+YRK+ + Sbjct: 359 QERTIGAVEKLGNAMNIPAP-IRIEAFDNSNIMGTNPVSAMVVFIDGRPAKNEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD A MR V+ RR+S+++K +PD++++DGGKGQ+ Sbjct: 418 T--VQGPDDYASMREVIYRRYSRVLKEG--------------LPFPDLILIDGGKGQVDV 461 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ VL + I + +AK K E F E + L + +QR++DE H Sbjct: 462 AKDVLAN-QLGVDIPVAGLAKNDKHKTS-ELLFGPNLEVVPLERNSQEFFLLQRIQDEVH 519 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ R K ++ S LD I G+GP RK+ LL+ F ++K I+ +S E L G+ + Sbjct: 520 RFAITFHRQLRSKNSFASKLDNIEGLGPKRKKNLLKEFKSLKNITAASVEELRKA-GLPE 578 Query: 598 KIACKIYNHFHKNTSH 613 +A +Y H H+ T+ Sbjct: 579 TVAKNVYRHLHQETTS 594 >gi|217964700|ref|YP_002350378.1| excinuclease ABC, C subunit [Listeria monocytogenes HCC23] gi|254764937|sp|B8DHZ8|UVRC_LISMH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|217333970|gb|ACK39764.1| excinuclease ABC, C subunit [Listeria monocytogenes HCC23] gi|307570739|emb|CAR83918.1| excinuclease ABC, C subunit [Listeria monocytogenes L99] Length = 603 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 180/622 (28%), Positives = 297/622 (47%), Gaps = 45/622 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY + + + ++ +I + + VT + Sbjct: 13 LPDQPGCYLMKDRQGTIIYVGKAKILKNRVRSYFSGTHDS-KTQRLVQEIVDFEYIVTSS 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 VEALLLE N+IK+ PRFNI L+DDK++P+I IT+ + P L R +G YFGP+ Sbjct: 72 NVEALLLEINLIKKHDPRFNIRLKDDKTYPFIKITN-ERHPRLIITRQVKKDKGKYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A + L R + LR C+ + CL + + +C PC ++ + KY E Sbjct: 131 PNVYAANEVKRILDRLYPLRKCSTLP----NKVCLYYHLGQCLAPCVFDVEASKYKEMQD 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E FL+GG +K + + M +A ++E A RD++ A+ N Sbjct: 187 EIVAFLNGGYKTVKNDLMKKMQEAAENMEFEKAGEFRDQINAIETTMEKQKMTMNDFVDR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +++ + + P+ Sbjct: 247 DVFGYAIDKGWMCVQVFFIRQGKLIERDVSQFPFYNDADEDFLTFIGQFYQKANHIPPKE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358 I L ++ + ++ + KI VP++G K+ +++ A NA Sbjct: 307 IYLPDDVDSEAVQAVVP------DTKIIVPQRGNKKDLVKLAYKNAKISLNEKFMLLERN 360 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E ++ + +P R+E +DNS+I G V MV + KN YRK+ + Sbjct: 361 EERTVGAVERLGEAMGIPTPS-RVEAFDNSNIHGTDPVSAMVTFLDGKPSKNDYRKYKIK 419 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD A MR V+ RR+ +++K PD++++DGGKGQ+ + Sbjct: 420 T--VEGPDDYATMREVIRRRYWRVLKEG--------------LPMPDLILIDGGKGQIDS 463 Query: 479 AQGVL-KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ VL +L ++ I + +AK K F E + L Y +QR++DE Sbjct: 464 AKDVLTNELGLD--IPVAGLAKDDKHRTSQ-LLFGDPLEIVPLERNSQEFYLLQRMQDEV 520 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R K S LD I G+GP RK+ LL+ FG++K + +S E + G+ Sbjct: 521 HRFAITFHRQLRSKTGFQSILDGIPGVGPGRKKKLLKHFGSMKKLKEASVEEIKEA-GVP 579 Query: 597 KKIACKIYNH---FHKNTSHTP 615 +A +++ H F++ +T Sbjct: 580 LNVAEEVHKHITAFNEKAKNTE 601 >gi|124267149|ref|YP_001021153.1| excinuclease ABC subunit C [Methylibium petroleiphilum PM1] gi|124259924|gb|ABM94918.1| Excinuclease ABC subunit C [Methylibium petroleiphilum PM1] Length = 673 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 210/653 (32%), Positives = 315/653 (48%), Gaps = 65/653 (9%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PGVY+ D G +LYVGKA NL+KR+ SY N+ R HM+ +I + TV + Sbjct: 36 LPSLPGVYRYFDAQGTLLYVGKAGNLKKRVSSYFQKNHGGTRTGHMVGRIARLETTVVRS 95 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKH---------------KIPALYK 110 E EALLLE N+IK L P+FNIL RDDKS+PY+ IT P + Sbjct: 96 EAEALLLENNLIKTLNPKFNILFRDDKSYPYLKITGAAVAGGPSPAAGTAAAVDYPRMAY 155 Query: 111 HRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGP 170 +R + YFGP+ S AV+++I LQ+ F LR+C D+VF HRTRPCLL+QIKRCSGP Sbjct: 156 YRGGVDKRHRYFGPYPSAWAVKESIQLLQKVFRLRTCEDTVFNHRTRPCLLYQIKRCSGP 215 Query: 171 CTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH 230 C I + Y V A++FL G + + M ++E A R++L ALS Sbjct: 216 CVQAIGAADYARDVRNAERFLLGEQQEVMGTLQAQMMAYADALEFEKAAEIRNQLGALSR 275 Query: 231 IQNHNDSIYN-------RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNA 283 + + N D + AC+ G++ G +F E++ Sbjct: 276 VLHQQSVETNADGAFDKDADILAAVVQGGRACVNLAMVRGGRHLGDRPYFPTHVEEASAL 335 Query: 284 QIL----------------------SYFLRQFYTDKPCPENILLSEEAEETSLLEISFFK 321 + + F+ Q Y D P ++ S ++ + + Sbjct: 336 EGMEDAAGPVAAVAPPQARVEVRVLEAFIAQHYLDGAPPPLLITSHAIDKALV--EALTD 393 Query: 322 QYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP-- 379 G +V + ++R+ +E A NA TQ L E S Q + L Sbjct: 394 ASGVRVTAQHQPRDQRRQWLEMAEKNARIKLTQLLGEEGSQQARTRALVDALDLAPDQLE 453 Query: 380 -KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERR 438 RIE +D SH G + VV E+ QYR++N+ + DD A MR VL RR Sbjct: 454 RFRIECFDISHTAGEATQASCVVFEEHKMQPAQYRRYNI--TGITPGDDYAAMRQVLTRR 511 Query: 439 FSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIA 498 +++L + PD+V++DGGKGQ++ A+ V ++L ++ + I+ + Sbjct: 512 YAKLAE----------ASAQGTARLPDLVLVDGGKGQVAMARDVFEELGLDLSL-IVGVE 560 Query: 499 KGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--S 555 KG R G+E+ G + L L + ++RDEAHRFAIT R RR S Sbjct: 561 KGEGRKVGLEELVFADGRAKVYLGKDSAALMLVAQIRDEAHRFAITGMRARRASVRTGGS 620 Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 L++I GIGP ++ LLQ FG + ++ +S + L+S++GIS+++A +IY H Sbjct: 621 RLEDIAGIGPKKRAKLLQRFGGARGVASASVDDLSSVDGISRELAEEIYRVLH 673 >gi|304316131|ref|YP_003851276.1| excinuclease ABC subunit C [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777633|gb|ADL68192.1| excinuclease ABC, C subunit [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 617 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 201/619 (32%), Positives = 329/619 (53%), Gaps = 18/619 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 + +PE PGVY M D +G+++YVGKA L+ R++ Y N ++ M+ I + + Sbjct: 7 KLKLLPEKPGVYIMKDSSGKIIYVGKAVILKNRVRQYFQNPANQIPKVRTMVRHIADFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT TE+EAL+LE N+IK+ KP++NILL+DDK++PYI IT P + R Sbjct: 67 IVTDTELEALILECNLIKKHKPKYNILLKDDKNYPYIKITVNEDYPRILFTRRLEMDGAK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP++S AV +TI L+ F LRSC ++ + + R CL + I CS PC G+IS + Sbjct: 127 YFGPYSSAFAVRETIKLLRHMFPLRSCNRNIEKDIGKCRECLYYHIGLCSAPCIGQISKD 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 YM+ V +A FL G + L +K+ M +A+ ++E A RD++ + I Sbjct: 187 DYMKLVDDALMFLEGKHDVLLKKLKEEMEKASQNMEFEKAAKLRDQIYGIEKTSEKQKII 246 Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D S+ + + ACIQ F G+ G +F+K E + I+S F++QFY Sbjct: 247 STSGEDQDVISMARSADDACIQVFFIRGGKVSGREHYFMKNTDEMNRSDIMSSFIKQFYD 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P P+ I+ + +E +L + G KV I++P +G+K+++++ NA S Sbjct: 307 GAPYIPKEIITDVDMDEKHVLAEWLSNKRGNKVVISIPSKGKKKELVDMVYENALESLKS 366 Query: 355 KLSTEISHQM--ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 ++ ++ Q + + +K L + RIE +D S+I G V MVV + K+ Y Sbjct: 367 DINLKMKRQKSDAVSELSKLLGLEYAE-RIEAFDISNIRGTDNVASMVVFVDGKPHKSSY 425 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEY-SFPSWPDVVILDG 471 RKFN+ V+ QDD MR V+ RR I+ + ++ +++ F PD++++DG Sbjct: 426 RKFNIKT--VEGQDDYGSMREVILRRIKHGIEERKLIDDGELQEDKAKFHIMPDLILVDG 483 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 G G ++ A+ VL++LNV+ I + + K K V + + M + Sbjct: 484 GLGHVNTAKEVLRELNVD--IPVYGMVKDSKHRTRG---LVSTDGEIDMPMTGRAFRLVA 538 Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 ++DEAHRFAIT H++ + K S L I GIG R + L ++F T+ I ++ E L Sbjct: 539 EIQDEAHRFAITFHKETKSKKLRSDLLNIPGIGEKRMKALFEAFKTIDDIKNATVEELKK 598 Query: 592 IEGISKKIACKIYNHFHKN 610 +EG+++K A +Y++F + Sbjct: 599 VEGMNEKAANAVYDYFRSD 617 >gi|254898605|ref|ZP_05258529.1| excinuclease ABC subunit C [Listeria monocytogenes J0161] gi|254911906|ref|ZP_05261918.1| excinuclease ABC transporter,ATP-binding protein [Listeria monocytogenes J2818] gi|254936231|ref|ZP_05267928.1| excinuclease ABC subunit C [Listeria monocytogenes F6900] gi|284801554|ref|YP_003413419.1| excinuclease ABC subunit C [Listeria monocytogenes 08-5578] gi|284994696|ref|YP_003416464.1| excinuclease ABC subunit C [Listeria monocytogenes 08-5923] gi|258608821|gb|EEW21429.1| excinuclease ABC subunit C [Listeria monocytogenes F6900] gi|284057116|gb|ADB68057.1| excinuclease ABC subunit C [Listeria monocytogenes 08-5578] gi|284060163|gb|ADB71102.1| excinuclease ABC subunit C [Listeria monocytogenes 08-5923] gi|293589864|gb|EFF98198.1| excinuclease ABC transporter,ATP-binding protein [Listeria monocytogenes J2818] Length = 603 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 181/622 (29%), Positives = 300/622 (48%), Gaps = 45/622 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY + + + ++ +I + + VT + Sbjct: 13 LPDQPGCYLMKDRQGTIIYVGKAKILKNRVRSYFSGTHDS-KTQRLVQEIVDFEYIVTSS 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 VEALLLE N+IK+ PRFNI L+DDK++P+I IT+ + P L R +G YFGP+ Sbjct: 72 NVEALLLEINLIKKHDPRFNIRLKDDKTYPFIKITN-ERHPRLIITRQVKKDKGKYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A + L R + LR C+ + CL + + +C PC ++ + KY E Sbjct: 131 PNVYAANEVKRILDRLYPLRKCSTLP----NKVCLYYHLGQCLAPCVFDVEASKYKEMQD 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E FL+GG +K + + M +A ++E A RD++ A+ N Sbjct: 187 EIVAFLNGGYKTVKNDLMKKMQEAAENMEFEKAGEFRDQINAIETTMEKQKMTMNDFVDR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +++ + + P+ Sbjct: 247 DVFGYAIDKGWMCVQVFFIRQGKLIERDVSQFPFYNDADEDFLTFIGQFYQKANHIPPKE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS----T 358 I L ++ + ++ + KI VP++G K+ +++ A NA + +K Sbjct: 307 IYLPDDVDSEAVQAVVP------DTKIIVPQRGNKKDLVKLAYKNAKIALNEKFMLLERN 360 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E ++ + +P R+E +DNS+I G V MV + KN YRK+ + Sbjct: 361 EERTVGAVERLGEAMGIPTPS-RVEAFDNSNIHGTDPVSAMVTFLDGKPSKNDYRKYKIK 419 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD A MR V+ RR+ +++K PD++++DGGKGQ+ + Sbjct: 420 T--VEGPDDYATMREVIRRRYWRVLKEG--------------LPMPDLILIDGGKGQIDS 463 Query: 479 AQGVL-KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ VL +L ++ I + +AK K F E + L Y +QR++DE Sbjct: 464 AKDVLTNELGLD--IPVAGLAKDDKHRTSQ-LLFGDPLEIVPLERNSQEFYLLQRMQDEV 520 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R K S LD I G+GP RK+ LL+ FG++K + +S E + G+ Sbjct: 521 HRFAITFHRQLRSKTGFQSILDGIPGVGPGRKKKLLKHFGSMKKLKEASIEEIKEA-GVP 579 Query: 597 KKIACKIYNH---FHKNTSHTP 615 +A +++ H F++ +T Sbjct: 580 LNVAEEVHKHITAFNEKAKNTE 601 >gi|254830012|ref|ZP_05234667.1| excinuclease ABC subunit C [Listeria monocytogenes 10403S] Length = 603 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 183/622 (29%), Positives = 301/622 (48%), Gaps = 45/622 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY + + + ++ +I + + VT + Sbjct: 13 LPDQPGCYLMKDRQGTIIYVGKAKILKNRVRSYFSGTHDS-KTQRLVQEIVDFEYIVTSS 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 VEALLLE N+IK+ PRFNI L+DDK++P+I IT+ + P L R +G YFGP+ Sbjct: 72 NVEALLLEINLIKKHDPRFNIRLKDDKTYPFIKITN-ERHPRLIITRQVKKDKGKYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A + L R + LR C+ + CL + + +C PC ++ + KY E Sbjct: 131 PNVYAANEVKRILDRLYPLRKCSTLP----NKVCLYYHLGQCLAPCVFDVEASKYKEMQD 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E FL+GG +K + + M +A ++E A RD++ A+ N Sbjct: 187 EIVAFLNGGYKTVKNDLMKKMQEAAENMEFEKAGEFRDQINAIETTMEKQKMTMNDFVDR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +++ + T+ P+ Sbjct: 247 DVFGYAIDKGWMCVQVFFIRQGKLIERDVSQFPFYNDADEDFLTFIGQFYQKTNHIPPKE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS----T 358 I L ++ + ++ I KI VP++G K+ +++ A NA + +K Sbjct: 307 IYLPDDVDSEAVQAIVP------DTKIIVPQRGNKKDLVKLAYKNAKIALNEKFMLLERN 360 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E ++ + +P R+E +DNS+I G V MV + KN YRK+ + Sbjct: 361 EERTVGAVERLGEAMGIPTPS-RVEAFDNSNIHGTDPVSAMVTFLDGKPSKNDYRKYKIK 419 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD A MR V+ RR+ +++K PD++++DGGKGQ+ + Sbjct: 420 T--VEGPDDYATMREVIRRRYWRVLKEG--------------LPMPDLILIDGGKGQIDS 463 Query: 479 AQGVL-KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ VL +L ++ I + +AK K F E + L Y +QR++DE Sbjct: 464 AKDVLTNELGLD--IPVAGLAKDDKHRTSQ-LLFGDPLEIVPLERNSQEFYLLQRMQDEV 520 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R K S LD I G+GP RK+ LL+ FG++K + +S E + G+ Sbjct: 521 HRFAITFHRQLRSKTGFQSILDGIPGVGPGRKKKLLKHFGSMKKLKEASIEEIKEA-GVP 579 Query: 597 KKIACKIYNH---FHKNTSHTP 615 +A +++ H F++ +T Sbjct: 580 LNVAEEVHKHITAFNEKAKNTE 601 >gi|311739495|ref|ZP_07713330.1| excision endonuclease subunit UvrC [Corynebacterium pseudogenitalium ATCC 33035] gi|311305311|gb|EFQ81379.1| excision endonuclease subunit UvrC [Corynebacterium pseudogenitalium ATCC 33035] Length = 691 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 181/685 (26%), Positives = 313/685 (45%), Gaps = 82/685 (11%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D RV+YVGKA NL+ R+ +Y R M+ N++ +TV Sbjct: 13 TIPTDPGVYKFRDENRRVIYVGKAKNLRARLSNYFQDITQLHPRTRQMVLTANSVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +EVEAL LE IKR P FN++ RDDK++P + ++ +P + +R YFG Sbjct: 73 ASEVEALQLEYTWIKRFDPHFNVMYRDDKTYPMLAVSVGETVPRAFFYRGPRRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ AV ++++ L R F +R+C+ V+ RPCLL I +C PC G +S E + Sbjct: 133 PYSHAWAVRESLDLLTRVFPMRTCSKGVYNRHERLGRPCLLGYIGKCDAPCIGRVSKEDH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E V++ F++G +++ K+ ++M QA ++E A RD L A+ I ++ Sbjct: 193 RETVNDLVSFMNGNTGSVRRKLTQDMEQAAENLEFERAARLRDDLGAIDKIMEQQAVVFT 252 Query: 241 R---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ------------- 284 D + ++ A +Q G+ RG + ++ + +++ Sbjct: 253 DGTDADLIAFSSDELEAAVQIFHVRDGRIRGQRGWVVERAGDQASSEPLEEGKPDPALPA 312 Query: 285 ILSYFLRQFYTD-----------------------------------KPCPENILLSEEA 309 ++ FL QFY+D + P IL+ Sbjct: 313 LVQNFLIQFYSDAVEREKQEAREDAALAADVKRRGVDQESHMKSRRVQVIPRQILVQALP 372 Query: 310 EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE----ISHQMI 365 +E + + G +V + VP++G+K++++ NA Q + Sbjct: 373 DEPEQVVALLEELRGAQVDLRVPQRGDKKQLMATVEKNAKEQLRQHKLKRVGDLTARSAA 432 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 L+D + + P RIE D SHI G V +VV + K+ YR++ + + Sbjct: 433 LQDIQEALGMEQAPLRIECTDISHIQGTDVVASLVVFEDGLPKKSDYRRYRIKEAAGDGR 492 Query: 426 -DDCAMMRMVLERRFSQLIKN---------------EENLNFHPKKQEYSFPSWPDVVIL 469 DD + + RRF + ++ EE + + F P + I+ Sbjct: 493 SDDVGSIAEITRRRFKRHKQDKLAHPDEEVEESSFAEEKVAEESAEAGRRFAYPPQLFIV 552 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGG Q++AAQ V +L + + +T++ +AK + E + E ++L L+ Sbjct: 553 DGGAPQVAAAQEVFDELGIVD-VTLVGLAKRLE-----EIWVPGDDEPVILPRNSQALFL 606 Query: 530 IQRLRDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 +Q++RDEAHRFAIT HR++R K S LD + G+GP R+ L++ FG+VK + ++ + Sbjct: 607 LQQIRDEAHRFAITYHRQQRSKRMRSSVLDSVPGLGPQRRTDLVKHFGSVKKLKAATVDE 666 Query: 589 LASIEGISKKIACKIYNHFHKNTSH 613 + + G K+A +Y H + Sbjct: 667 ICEVNGFGPKLAQTVYESLHDSAGS 691 >gi|327535047|gb|AEA93881.1| excision endonuclease subunit UvrC [Enterococcus faecalis OG1RF] Length = 598 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 184/616 (29%), Positives = 311/616 (50%), Gaps = 41/616 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY ++ T + ++S+I++ + VT + Sbjct: 12 LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFRGSHDT-KTERLVSEIDDFEYIVTES 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EALLLE N+I + P++NI+L+DDK++P+I IT+ K P L R + YFGP+ Sbjct: 71 NIEALLLEINLIHKNNPKYNIMLKDDKTYPFIKITN-EKYPRLMITRKVLKDKALYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 V+A +T L R F LR C + PCL + + +C P ++ + Y + V Sbjct: 130 PDVNAANETKKLLDRLFPLRKCN----PSQKTPCLYYHLGQCLCPYAFDVDPQVYKDMVE 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNRM 242 E K FLSGG+ +++++ M A ++E A RD++ A+ + + Sbjct: 186 EIKGFLSGGHTEIQDRLQEKMAYAAAHMEFEKAAEFRDQIKAIETVMTRQKMTNVDLIDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +++ A + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRQGKLIERDVSIFPFYDDASEAFLTFIGQFYQENEHFVPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 +L+ ++ ++ S+ + K + P++GEK+K+++ A NA + + Sbjct: 306 VLIPDDIDKESVEALLATK-------VLQPQRGEKKKLVKLASKNAAVALNEKFDLIVRK 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + ++ +P RIE +DNS+IMG + V MVV + KN+YRK+ + Sbjct: 359 QERIIGAVEKLGNAMNIPAP-IRIEAFDNSNIMGTNPVSAMVVFIDGRPAKNEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD A MR V+ RR+S+++K +PD++++DGGKGQ+ Sbjct: 418 T--VQGPDDYASMREVIYRRYSRVLKEG--------------LPFPDLILIDGGKGQVDV 461 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ VL + I + +AK K E F E + L + +QR++DE H Sbjct: 462 AKDVLAN-QLGVDIPVAGLAKNDKHKTS-ELLFGPNLEVVPLERNSQEFFLLQRIQDEVH 519 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ R K ++ S LD I G+GP RK+ LL+ F ++K I+ +S E L G+ + Sbjct: 520 RFAITFHRQLRSKNSFASKLDNIEGLGPKRKKNLLKEFKSLKNITAASVEELRKA-GLPE 578 Query: 598 KIACKIYNHFHKNTSH 613 +A +Y H H+ T+ Sbjct: 579 TVAKNVYRHLHQETTS 594 >gi|256962009|ref|ZP_05566180.1| excinuclease ABC [Enterococcus faecalis Merz96] gi|257082627|ref|ZP_05576988.1| excinuclease ABC [Enterococcus faecalis E1Sol] gi|257416016|ref|ZP_05593010.1| excinuclease ABC [Enterococcus faecalis AR01/DG] gi|293382378|ref|ZP_06628317.1| excinuclease ABC subunit C [Enterococcus faecalis R712] gi|293389360|ref|ZP_06633818.1| excinuclease ABC subunit C [Enterococcus faecalis S613] gi|312907380|ref|ZP_07766371.1| excinuclease ABC subunit C [Enterococcus faecalis DAPTO 512] gi|312909997|ref|ZP_07768844.1| excinuclease ABC subunit C [Enterococcus faecalis DAPTO 516] gi|256952505|gb|EEU69137.1| excinuclease ABC [Enterococcus faecalis Merz96] gi|256990657|gb|EEU77959.1| excinuclease ABC [Enterococcus faecalis E1Sol] gi|257157844|gb|EEU87804.1| excinuclease ABC [Enterococcus faecalis ARO1/DG] gi|291080323|gb|EFE17687.1| excinuclease ABC subunit C [Enterococcus faecalis R712] gi|291081247|gb|EFE18210.1| excinuclease ABC subunit C [Enterococcus faecalis S613] gi|310626408|gb|EFQ09691.1| excinuclease ABC subunit C [Enterococcus faecalis DAPTO 512] gi|311289270|gb|EFQ67826.1| excinuclease ABC subunit C [Enterococcus faecalis DAPTO 516] gi|315147903|gb|EFT91919.1| excinuclease ABC subunit C [Enterococcus faecalis TX4244] Length = 598 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 185/616 (30%), Positives = 311/616 (50%), Gaps = 41/616 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY ++ T + ++S+I++ + VT + Sbjct: 12 LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFRGSHDT-KTERLVSEIDDFEYIVTES 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EALLLE N+I + P++NI+L+DDK++P+I IT+ K P L R + YFGP+ Sbjct: 71 NIEALLLEINLIHKNNPKYNIMLKDDKTYPFIKITN-EKYPRLMITRKVLKDKALYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 V+A +T L R F LR C + PCL + + +C P ++ + Y + V Sbjct: 130 PDVNAANETKKLLDRLFPLRKCN----PSQKTPCLYYHLGQCLCPYAFDVDPQVYKDMVE 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNRM 242 E K FLSGG+ +++++ M A ++E A RD++ A+ + + Sbjct: 186 EIKGFLSGGHTEIQDRLQEKMAYAAAHMEFEKAAEFRDQIKAIETVMTRQKMTNVDLIDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +++ A + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRQGKLIERDVSIFPFYDDASEAFLTFIGQFYQENEHFVPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 +L+ ++ ++ S+ + K I P++GEK+K+++ A NA + + Sbjct: 306 VLIPDDIDKESVEALLATK-------ILQPQRGEKKKLVKLASKNAAVALNEKFDLIVRK 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + ++ +P RIE +DNS+IMG + V MVV + KN+YRK+ + Sbjct: 359 QERTIGAVEKLGNAMNIPAP-IRIEAFDNSNIMGTNPVSAMVVFIDGRPAKNEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD A MR V+ RR+S+++K +PD++++DGGKGQ+ Sbjct: 418 T--VQGPDDYASMREVIYRRYSRVLKEG--------------LPFPDLILIDGGKGQVDV 461 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ VL + I + +AK K E F E + L + +QR++DE H Sbjct: 462 AKDVLAN-QLGVDIPVAGLAKNDKHKTS-ELLFGPNLEVVPLERNSQEFFLLQRIQDEVH 519 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ R K ++ S LD I G+GP RK+ LL+ F ++K I+ +S E L G+ + Sbjct: 520 RFAITFHRQLRSKNSFASKLDNIEGLGPKRKKNLLKEFKSLKNITAASVEELRKA-GLPE 578 Query: 598 KIACKIYNHFHKNTSH 613 +A +Y H H+ T+ Sbjct: 579 TVAKNVYRHLHQETTS 594 >gi|256762412|ref|ZP_05502992.1| excinuclease ABC [Enterococcus faecalis T3] gi|256683663|gb|EEU23358.1| excinuclease ABC [Enterococcus faecalis T3] Length = 598 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 184/616 (29%), Positives = 311/616 (50%), Gaps = 41/616 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY ++ T + ++S+I++ + VT + Sbjct: 12 LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFRGSHDT-KTERLVSEIDDFEYIVTES 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EALLLE N+I + P++NI+L+DDK++P+I IT+ K P L R + YFGP+ Sbjct: 71 NIEALLLEINLIHKNNPKYNIMLKDDKTYPFIKITN-EKYPRLMITRKVLKDKALYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 V+A +T L R F LR C + PCL + + +C P ++ + Y + V Sbjct: 130 PDVNAANETKKLLDRLFPLRKCN----PSQKTPCLYYHLGQCLCPYAFDVDPQVYKDMVE 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNRM 242 E K FLSGG+ +++++ M A ++E A RD++ A+ + + Sbjct: 186 EIKGFLSGGHTEIQDRLQEKMAYAAAHMEFEKAAEFRDQIKAIETVMTRQKMTNVDLIDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +++ A + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRQGKLIERDVSIFPFYDDASEAFLTFIGQFYQENEHFVPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 +L+ ++ ++ S+ + K + P++GEK+K+++ A NA + + Sbjct: 306 VLIPDDIDKESVEALLATK-------VLQPQRGEKKKLVKLASKNAAVALNEKFDLIVRK 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + ++ +P RIE +DNS+IMG + V MVV + KN+YRK+ + Sbjct: 359 QERTIGAVEKLGNAMNIPAP-IRIEAFDNSNIMGTNPVSAMVVFIDGRPAKNEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD A MR V+ RR+S+++K +PD++++DGGKGQ+ Sbjct: 418 T--VQGPDDYASMREVIYRRYSRVLKEG--------------LPFPDLILIDGGKGQVDV 461 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ VL + I + +AK K E F E + L + +QR++DE H Sbjct: 462 AKDVLAN-QLGVDIPVAGLAKNDKHKTS-ELLFGPNLEVVPLERNSQEFFLLQRIQDEVH 519 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ R K ++ S LD I G+GP RK+ LL+ F ++K I+ +S E L G+ + Sbjct: 520 RFAITFHRQLRSKNSFASKLDNIEGLGPKRKKNLLKEFKSLKNITAASVEELRKA-GLPE 578 Query: 598 KIACKIYNHFHKNTSH 613 +A +Y H H+ T+ Sbjct: 579 TVAKNVYRHLHQETTS 594 >gi|73748905|ref|YP_308144.1| excinuclease ABC subunit C [Dehalococcoides sp. CBDB1] gi|90111067|sp|Q3ZYA3|UVRC_DEHSC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|73660621|emb|CAI83228.1| excinuclease ABC, C subunit [Dehalococcoides sp. CBDB1] Length = 607 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 212/613 (34%), Positives = 329/613 (53%), Gaps = 27/613 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +PE PGVY M + G ++YVGKA L+ R+KSY + T + ++SQIN + + +T Sbjct: 12 SLPENPGVYLMKNAQGEIIYVGKAAVLKDRVKSYFVPPSRLTPKTCQLVSQINELEYLIT 71 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E EAL+LE N+IKR +P FN+ L+DDK FPY+ IT K P +Y R + G YFG Sbjct: 72 GSEQEALILELNLIKRHRPYFNVRLKDDKGFPYLKITLNEKWPRIYITRSMADDGGRYFG 131 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFA+ +V T+ L+ F RSC + +RPCL + I +C PCTG+IS Y Sbjct: 132 PFANTRSVRHTLQVLKELFRFRSCNRTEPEKHSRPCLEYDIHQCLSPCTGKISKSDYDHL 191 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND---SIYN 240 + +A FL G + + + R MN+A+ + DYE+A + RD++A++ + + Sbjct: 192 ISQAILFLEGKQDQVLKLLIRLMNEASARLDYETAALRRDQIASIKEVIEGQQLAARVTG 251 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-C 299 D + +L+ +Q F G+ G +F L+ E ILS F +QFY Sbjct: 252 EQDAIAFAQEGDLSMVQVFFIRRGKLIGRESFCLQGTREEKPGDILSEFAKQFYHSSTQI 311 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQK 355 P I+ + +LE ++ G KV IT +G+ +++I NA ++ + Sbjct: 312 PPKIVTQYPVSDREILEKWLSQRRGDKVHITAGLRGQPKELINIVAENAREQLKQARIKN 371 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS+ ++ L + L P+RIE YD S+I G +AVG MVV K YR+F Sbjct: 372 LSSSVTLTDALAELQTALGLSLPPQRIEGYDISNIQGTNAVGSMVVFENGKPQKAHYRRF 431 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 + VK DD +M++ V+ RRF ++ + + SF P ++++DGGKGQ Sbjct: 432 RIKT--VKGADDFSMLKEVISRRFGRVHRED---------AGESFARLPSLMLIDGGKGQ 480 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 LS+ + L KL +E + +I +AK + E + K E + L P L +QR+RD Sbjct: 481 LSSVKETLDKLGLEGQ-AVIGLAKEFE-----EIYLPHKSEPIRLAANSPALQLLQRVRD 534 Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFA+ H R+K+ S LD I G+GP R+RLL+++FG+V I ++S E L+ ++G Sbjct: 535 EAHRFALGYHLHIRQKSGLTSALDGIPGVGPSRRRLLIKTFGSVAGIRQASFEKLSQVKG 594 Query: 595 ISKKIACKIYNHF 607 I++ +A I Sbjct: 595 INQALALSIKELL 607 >gi|308276485|gb|ADO26384.1| UvrABC system protein C [Corynebacterium pseudotuberculosis I19] Length = 675 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 179/669 (26%), Positives = 311/669 (46%), Gaps = 69/669 (10%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA NL+ R+ +Y + R M++ +++ +TV Sbjct: 13 SIPTDPGVYKFRDSHGRVVYVGKAKNLRSRLSNYFQDLSVLHPRTRQMVTTASSVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +EVEAL LE IK+ PRFN+ RDDK++P + ++ + P + +R YFG Sbjct: 73 SSEVEALQLEYTWIKKFDPRFNVKYRDDKTYPMLAVSVGERFPRAFFYRGPQRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ AV +T++ L R F +R+C+ VF RPCLL I +CS PC G ++ +++ Sbjct: 133 PYSHAWAVRETLDLLTRVFPVRTCSKGVFNRHESLGRPCLLGYIDKCSAPCIGRVTEQEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + V+ F++G + + M A + D+E A RD + A+ I + Sbjct: 193 RDIVNGFCSFMAGKTDAVVASLNSQMLTAAEELDFERAARLRDDIHAVQKITEQQAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT--DSESTNAQILSYFLRQFYT 295 D ++ + A IQ G+ +G + ++ DSE ++L FL +FYT Sbjct: 253 DGTDADVIAISADDLEASIQLFHVRAGRVKGQRGWIVERTGDSEEELQELLQAFLIRFYT 312 Query: 296 DKP-------------------------------------CPENILLSEEAEETSLLEIS 318 D P+ +L+ + +++ Sbjct: 313 DAVELEEETNKEEENVIRRGVDQFSYVDEHLSSHQLRGSMIPKEVLVEIAPLDLEHTKVA 372 Query: 319 FFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLSTEISHQMILKDFTKKFA 374 + G V + VP +G+KR ++E NA + +++ + L++ + Sbjct: 373 LSELRGSLVDLRVPARGDKRALMETVHANAVETLRQHKLKRVGDLTARSAALQELQEALF 432 Query: 375 LPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRM 433 L P RIE D SHI G V +VV + K+ YR++ + +D + Sbjct: 433 LEEAPLRIECIDISHIQGTDVVASLVVFEDGLPKKSDYRRYKIKDAAGDGHSNDVVSIAE 492 Query: 434 VLERRFSQLIKNEENLNFHPK-----------KQEYSFPSWPDVVILDGGKGQLSAAQGV 482 V+ RRF + K+ + + + F P + I+DGG Q++AA + Sbjct: 493 VVRRRFIRHHKDRLTVPEAEEFDGSTFTDETVEHSKRFAYPPQLFIVDGGSPQVAAADAI 552 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 ++L V N + ++ IAK + E + + E ++L +Y +Q++RDEAHRFAI Sbjct: 553 FEELGV-NDVALVGIAKRLE-----ELWIPQDDEPVILPRNSQAMYLVQQIRDEAHRFAI 606 Query: 543 TTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 HR++R K S LD I G+G R+ L++ FG+VK + +S E + +++G ++A Sbjct: 607 AFHRQQRSKRMRTSALDNIKGLGQTRRTELVKHFGSVKKLKAASVEEITAVKGFGPQLAQ 666 Query: 602 KIYNHFHKN 610 +++ Sbjct: 667 NVFDALRAE 675 >gi|290893284|ref|ZP_06556270.1| excinuclease ABC [Listeria monocytogenes FSL J2-071] gi|290557092|gb|EFD90620.1| excinuclease ABC [Listeria monocytogenes FSL J2-071] Length = 603 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 181/622 (29%), Positives = 300/622 (48%), Gaps = 45/622 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY + + + ++ +I + + VT + Sbjct: 13 LPDQPGCYLMKDRQGTIIYVGKAKILKNRVRSYFSGTHDS-KTQRLVQEIVDFEYIVTSS 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 VEALLLE N+IK+ PRFNI L+DDK++P+I IT+ + P L R +G YFGP+ Sbjct: 72 NVEALLLEINLIKKHDPRFNIRLKDDKTYPFIKITN-ERHPRLIITRQVKKDKGKYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A + L R + LR C+ + CL + + +C PC ++ + KY E Sbjct: 131 PNVYAANEVKRILDRLYPLRKCSTLP----NKVCLYYHLGQCLAPCVFDVEASKYKEMQD 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E FL+GG +K + + M +A ++E A RD++ A+ N Sbjct: 187 EIVAFLNGGYKTVKNDLMKKMQEAAENMEFEKAGEFRDQINAIETTMEKQKMTMNDFVDR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +++ + + P+ Sbjct: 247 DVFGYAIDKGWMCVQVFFIRQGKLIERDVSQFPFYNDADEDFLTFIGQFYQKANHIPPKE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS----T 358 I L ++ + ++ + KI VP++G K+ +++ A NA + +K Sbjct: 307 IYLPDDVDSEAVQAVVP------DTKIIVPQRGNKKDLVKLAYKNAKIALNEKFMLLERN 360 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E ++ + +P R+E +DNS+I G V MV + KN YRK+ + Sbjct: 361 EERTVGAVERLGESMGIPTPS-RVEAFDNSNIHGTDPVSAMVTFLDGKPSKNDYRKYKIK 419 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD A MR V+ RR+ +++K PD++++DGGKGQ+ + Sbjct: 420 T--VEGPDDYATMREVIRRRYWRVLKEG--------------LPMPDLILIDGGKGQIDS 463 Query: 479 AQGVL-KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ VL +L ++ I + +AK K F E + L Y +QR++DE Sbjct: 464 AKDVLTNELGLD--IPVAGLAKDDKHRTSQ-LLFGDPLEIVPLERNSQEFYLLQRMQDEV 520 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R K S LD I G+GP RK+ LL+ FG++K + +S E + G+ Sbjct: 521 HRFAITFHRQLRSKTGFQSILDGIPGVGPGRKKKLLKHFGSMKKLKEASVEEIKEA-GVP 579 Query: 597 KKIACKIYNH---FHKNTSHTP 615 +A +++ H F++ +T Sbjct: 580 LNVAEEVHKHITAFNEKAKNTE 601 >gi|332535897|ref|ZP_08411612.1| excinuclease ABC subunit C [Pseudoalteromonas haloplanktis ANT/505] gi|332034713|gb|EGI71260.1| excinuclease ABC subunit C [Pseudoalteromonas haloplanktis ANT/505] Length = 586 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 214/602 (35%), Positives = 324/602 (53%), Gaps = 27/602 (4%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 MLD +V+YVGKA +L+KR+ SY SN + ++S I +I T+T TE EALLLE Sbjct: 1 MLDSDNQVIYVGKAKHLKKRVSSYFRSNITDSKTRVLVSNICDIEVTLTNTETEALLLEN 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N+IK+ +PR+NILLRDDKS+PYIL+T HK P L HR S I+G YFGPF S AV ++ Sbjct: 61 NLIKKYQPRYNILLRDDKSYPYILLT-SHKHPRLAFHRGSRKIKGEYFGPFPSAGAVSES 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194 + +Q+ F +R C D+ +R R+RPCL +Q+KRCS PC +++ + Y E V +KFL+G Sbjct: 120 LRLMQKIFPVRQCEDAYYRARSRPCLQYQLKRCSAPCVNKVTDDDYSEQVDYVRKFLTGK 179 Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCFSLYHNKN 252 +H + + + M A+ + ++E A RD++ L +Q N MD H Sbjct: 180 SHEVIADLIKKMEGASKQLNFELAAKVRDQIMLLRKMQEQQSISGNFAEMDVVGFAHLNG 239 Query: 253 LACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLSEE 308 L I + G+ T+F K +S+ +IL+ FL Q+Y + I+L E Sbjct: 240 LNGIHLLMIRDHKVLGSKTYFPKVPKDSSEQEILTSFLGQYYLAPGATGRIAKEIILPFE 299 Query: 309 AEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKD 368 EE+ +L + + KV + V +GE+ + ++ A NA S K ST+ S Sbjct: 300 IEESQVLGEALTQISERKVTLKVVTRGERAQYLQLANKNALNSIAVKQSTQDSINKRYAQ 359 Query: 369 FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDC 428 L I R+E +D SH MG + V VV G +YR++N+ + DD Sbjct: 360 LKATLRLDDIT-RMECFDISHTMGENTVASCVVFDSQGPNTKEYRRYNV--TGITGGDDY 416 Query: 429 AMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNV 488 A M L +R+++L+ ++ PDV+ +DGGKGQL A+ Sbjct: 417 AAMEFALNKRYNKLVDEDK---------------IPDVIFIDGGKGQLGRAEQYFSNWPH 461 Query: 489 ENRITIISIAKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRK 547 ++ +AKG R G+E + G + ++ P L+ IQ +RDE+HRFAI HR Sbjct: 462 TKMPLLVGVAKGTSRKPGLETLLIDGGRKTIPMDSDAPALHLIQHIRDESHRFAIAGHRN 521 Query: 548 RRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 +R+K S L+EING+G R++ LL+ G ++ + ++ E L + GIS +A KI+NH Sbjct: 522 KRQKQRTQSLLEEINGVGSKRRQTLLKYLGGMQGVKAANIEQLKKVPGISPDMAEKIFNH 581 Query: 607 FH 608 H Sbjct: 582 LH 583 >gi|39998368|ref|NP_954319.1| excinuclease ABC subunit C [Geobacter sulfurreducens PCA] gi|81700975|sp|Q747I7|UVRC_GEOSL RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|39985314|gb|AAR36669.1| excinuclease ABC, C subunit [Geobacter sulfurreducens PCA] gi|298507308|gb|ADI86031.1| excinuclease ABC, C subunit [Geobacter sulfurreducens KN400] Length = 613 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 192/623 (30%), Positives = 297/623 (47%), Gaps = 30/623 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVT 63 +P+ PGVY M G +LYVGKA +L+KR++SY + I ++ ++ +I VT Sbjct: 9 TLPDAPGVYLMKGNGGDILYVGKAKSLRKRVRSYFSKGGESRYHIRFLVGRVADIDVIVT 68 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLE +IK +PR+N+ LRDDK++ + + + P L R YFG Sbjct: 69 DTEKEALLLENTLIKEHRPRYNLDLRDDKTYFSLRLDMNEEFPRLTIVRRPGRDGARYFG 128 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P++S A + + L + F LR R R RPCL +Q+++C+ PC G IS E Y Sbjct: 129 PYSSASAAREVLKQLYKLFPLRHYPLESCRRRRRPCLFYQLRQCAAPCHGLISGEDYQSL 188 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD 243 A FL+G N +L + M A E YE A +RD + A+ + D Sbjct: 189 AEGAALFLAGKNSDLTRLYRQRMAAAAADERYEDAARYRDLIRAIEVTVEKQKMVAGDGD 248 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DKPCPEN 302 + ++ + + R + D E +A+ LS FL +Y D P+ Sbjct: 249 TDVVGFFRDATDLSVSILFYRGGRLMGSRNYLLDWEMDDAEGLSSFLSGYYNRDVVIPDE 308 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 IL+ ++T L ++ G K + P +G K +++ A NA +K + Sbjct: 309 ILIPFTVDDTDPLGELLTERRGKKTVLRHPVRGTKAELVRLAARNAEAYLHEKREKDSGM 368 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 + +L + +K L ++P+RIE YD S I G +VG V K YR++ + V Sbjct: 369 EQVLGELKEKLHLTNLPRRIECYDISTIQGRYSVGSRVRFQNGAPDKAGYRRYRIRT--V 426 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD AMM VL RRF + PD++++DGG GQL+ + Sbjct: 427 PGTDDFAMMHEVLSRRFRD---------------GHGGDGRPDLIVIDGGMGQLNVLTAI 471 Query: 483 LKKLNVENRITIISIAK-GPKRSAG--------MEKFFVKKGEALVLNMRDPILYFIQRL 533 L++L + I +S+AK +R+ F + +VL L + R+ Sbjct: 472 LEELGLHG-IDAVSLAKSRVERNMSDNEVVRSDERVFLPGRRNPVVLRQNGAPLLLLARI 530 Query: 534 RDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDEAHRFAIT H+K R K + S L+ I GIG RKR LL+ FG+++ + ++ E LA++ Sbjct: 531 RDEAHRFAITYHQKLRGKGSIRSSLEGIPGIGEKRKRELLKRFGSIRALRQADREQLAAV 590 Query: 593 EGISKKIACKIYNHFHKNTSHTP 615 +S +A I+ H P Sbjct: 591 PSVSPALADAIWKALHGEEPEAP 613 >gi|257085336|ref|ZP_05579697.1| excinuclease ABC [Enterococcus faecalis Fly1] gi|256993366|gb|EEU80668.1| excinuclease ABC [Enterococcus faecalis Fly1] Length = 598 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 185/616 (30%), Positives = 311/616 (50%), Gaps = 41/616 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY ++ T + ++S+I++ + VT + Sbjct: 12 LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFRGSHDT-KTERLVSEIDDFEYIVTES 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EALLLE N+I + P++NI+L+DDK++P+I IT+ K P L R + YFGP+ Sbjct: 71 NIEALLLEINLIHKNNPKYNIMLKDDKTYPFIKITN-EKYPRLMITRKVLKDKALYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 V+A +T L R F LR C + PCL + + +C P ++ + Y + V Sbjct: 130 PDVNAANETKKLLDRLFPLRKCN----PSQKTPCLYYHLGQCLCPYAFDVDPQVYKDMVE 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNRM 242 E K FLSGG+ +++++ M A ++E A RD++ A+ + + Sbjct: 186 EIKGFLSGGHTEIQDRLQEKMAYAAAHMEFEKAAEFRDQIKAIETVMTRQKMTNVDLIDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +++ A + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRQGKLIERDVSIFPFYDDASEAFLTFIGQFYQENEHFVPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 +L+ ++ ++ S+ + K I P++GEK+K+++ A NA + + Sbjct: 306 VLIPDDIDKESVEALLATK-------ILQPQRGEKKKLVKLASKNAAVALNEKFDLIVRK 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + ++ +P RIE +DNS+IMG + V MVV + KN+YRK+ + Sbjct: 359 QERTIGAVEKLGNVMNIPAP-IRIEAFDNSNIMGTNPVSAMVVFIDGRPAKNEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD A MR V+ RR+S+++K +PD++++DGGKGQ+ Sbjct: 418 T--VQGPDDYASMREVIYRRYSRVLKEG--------------LPFPDLILIDGGKGQVDV 461 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ VL + I + +AK K E F E + L + +QR++DE H Sbjct: 462 AKDVLAN-QLGVDIPVAGLAKNDKHKTS-ELLFGPNLEVVPLERNSQEFFLLQRIQDEVH 519 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ R K ++ S LD I G+GP RK+ LL+ F ++K I+ +S E L G+ + Sbjct: 520 RFAITFHRQLRSKNSFASKLDNIEGLGPKRKKNLLKEFKSLKNITAASVEELRKA-GLPE 578 Query: 598 KIACKIYNHFHKNTSH 613 +A +Y H H+ T+ Sbjct: 579 TVAKNVYRHLHQETTS 594 >gi|256825143|ref|YP_003149103.1| Excinuclease ABC subunit C [Kytococcus sedentarius DSM 20547] gi|256688536|gb|ACV06338.1| Excinuclease ABC subunit C [Kytococcus sedentarius DSM 20547] Length = 651 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 203/639 (31%), Positives = 319/639 (49%), Gaps = 40/639 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTVT 63 ++P PGVY+ D GRV+YVGKA +L+ R+ SY R M++ ++ +TV Sbjct: 13 EIPTSPGVYRFRDTHGRVIYVGKAKSLRSRLSSYFQNPAQLHPRTRQMVNTGASVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE IK PRFN+ RDDKS+PY+ +T ++P R + Y+G Sbjct: 73 NTEVEALQLEYAWIKEFDPRFNVKYRDDKSYPYLAVTWAEEVPRAMVMRGAKRKGNRYYG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180 PFA A+ +T++ R F +R+C+ V+ RPCLL I +CS PC G ++ E++ Sbjct: 133 PFAQAWAIRETLDLATRVFPIRTCSKGVYNRAAAAGRPCLLGYIDKCSAPCVGAVTPEQH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E V++ +F+SG L + M QA D+E+A RD L AL + + ++N Sbjct: 193 REIVNDFCRFMSGDTAGLLRDLRGRMEQAAADLDFENAARLRDDLGALEKVLEKSAVVFN 252 Query: 241 RM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--T 295 D F + ++ A +Q G+ RG + + + A+ + + LRQFY Sbjct: 253 ETVDADLFGIADDELEAAVQVFHVRGGRIRGQRGWVVD-KEDHPTAEAIEHLLRQFYGTG 311 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 D+ P +L+S + + +L G +V I P++G+K ++ + NA S + Sbjct: 312 DEEIPREVLVSTDPTDHEVLTEWLTSMRGSQVTIRTPERGDKATLLRTVIRNAEESLARH 371 Query: 356 LSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 + + L + + L P RIE YD SH G ++VG MVV + K++ Sbjct: 372 KMSRAGDLTARSAALAELEEALGLAEAPLRIECYDISHTQGENSVGSMVVFEDGLPRKSE 431 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFS---------------QLIKNEENLNFHPKKQ 456 YR+F + DD M VL RRF + ++E + + Sbjct: 432 YRRFIVRE----PADDTRAMAEVLTRRFRHGTSSPEGDDLSDGPRQGASDEAGDSTSPRP 487 Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE 516 F P ++++DGG Q+++A+ L E+ I ++ +AK + E + Sbjct: 488 AKRFAYPPQLIVVDGGLPQVNSARAALDAAGAED-IAVVGLAKRLE-----EVWVPGDDF 541 Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSF 575 LVL L+ +QRLRDEAHRFAIT HR+RR K S LD + G+GP R+R LL++F Sbjct: 542 PLVLPRSSDALFLLQRLRDEAHRFAITFHRQRRSKAMTASELDTVPGLGPARRRALLEAF 601 Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 GTV+ I ++PE LA++ GI +A + H +T+ Sbjct: 602 GTVRAIRAATPEELAAVPGIGPGLARTVQEHLSGSTAAP 640 >gi|326796055|ref|YP_004313875.1| UvrABC system protein C [Marinomonas mediterranea MMB-1] gi|326546819|gb|ADZ92039.1| UvrABC system protein C [Marinomonas mediterranea MMB-1] Length = 607 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 218/613 (35%), Positives = 341/613 (55%), Gaps = 26/613 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY+M +LYVGKA NL+ R+ SY + T + ++S+I+ I T+T Sbjct: 14 HLTTRPGVYRMYGK-DELLYVGKAKNLKNRVSSYFRATGLTTKTMALVSRIDAIEITITK 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE +IK+ +P +NILLRDDKS+PYIL++ H PAL R ++G +GP Sbjct: 73 SETEALLLEQTLIKQHRPPYNILLRDDKSYPYILLS-HHDHPALLFRRGGKKVEGKLYGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEF 183 F S AV ++++++Q+ F +R C DS + +RTRPCL +QIKRCSGPC I+ E+Y Sbjct: 132 FPSGTAVRESLSTMQKVFKVRQCEDSYYANRTRPCLQYQIKRCSGPCVDGLIADEEYAND 191 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNR 241 V A+ FL G N L +I M A + ++E A RD++ L HIQ + Sbjct: 192 VRHARMFLEGKNQELVSEITAQMKTAAVDMEFERAAELRDQVVQLKHIQEEQNVYGQSGD 251 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPC 299 D + C+ G+ G+ +++ K E + A++LS F+ QFY Sbjct: 252 ADIVAAIIQPGGLCVHLMLVRQGKVTGSKSYYPKMPIEISEAELLSNFVAQFYLSGGHEL 311 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P++I+LS + E+ +L+ + F+ KV+IT +G++ + ++ +NA + +L + Sbjct: 312 PKSIILSHDVEDMDVLQAALFETSKRKVEITSQVRGQRARWLDLVKLNAEQGLQARLMDK 371 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 +H + K P +E +D SH G + V VV G +G K +YR FN+ Sbjct: 372 RNHFSRVAALQKVLGFKSPPSHMECFDISHSSGEATVASCVVFGPDGPDKKRYRSFNIEG 431 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 V+ DD M+ L+RR+ ++ E PDV+++DGGKGQL+ A Sbjct: 432 --VEAGDDYGAMKQALQRRYKRVKDGE--------------IDAPDVLLIDGGKGQLTQA 475 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAH 538 + VLK+L + + I ++ +AKG R G+E ++ E +VL L+ IQ +RDEAH Sbjct: 476 EDVLKELGLVD-IFLLGVAKGDTRKPGLETLYIGSKEDEVVLPPDSSALHLIQHIRDEAH 534 Query: 539 RFAI-TTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFA+ + R+R KK +S L+EI G+GP R++ LL SFG + + +S E +A ++GIS Sbjct: 535 RFAVKSHRRRRDKKRRHSVLEEIPGVGPTRRKDLLTSFGGYQELLAASQEEIAKVKGISA 594 Query: 598 KIACKIYNHFHKN 610 K A +IY + HK+ Sbjct: 595 KKAEEIYQYLHKS 607 >gi|290475674|ref|YP_003468563.1| DNA exisiton repair enzyme together with UvrAB [Xenorhabdus bovienii SS-2004] gi|289174996|emb|CBJ81799.1| DNA exisiton repair enzyme together with UvrAB [Xenorhabdus bovienii SS-2004] Length = 588 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 212/606 (34%), Positives = 326/606 (53%), Gaps = 31/606 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D G V+YVGKA +L+KR+ SY + + + ++ I I TVT TE EALLLE Sbjct: 1 MYDTTGSVIYVGKAKDLKKRLSSYFRTQVGSRKTESLVKNIVQIDVTVTHTETEALLLEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK +PR+N+LLRDDKS+PYI ++ P L +R + +G YFGPF + AV T Sbjct: 61 NYIKLYQPRYNVLLRDDKSYPYIFLS-GDTHPRLTLYRGAKHAKGEYFGPFPNSHAVRDT 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHEAKKFLSG 193 + LQ+ F +R C DSV+R+R+RPCL +QI RC PC +++E+Y + V + FLSG Sbjct: 120 LALLQKLFPIRQCEDSVYRNRSRPCLQYQIGRCLAPCVNGFVTNEEYQQQVDYVRLFLSG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYNRMDCFSLYHNK 251 + + ++ M A+ + +E A +RD++ A+ + + +D S+ + Sbjct: 180 KDQQVLTELVGRMEAASKQLQFEDAARYRDQIQAVRQVTERQFVSGEGDDLDVISVAFDT 239 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLSE 307 +AC+ F G+ G+ +++ K +++ +++ FL QFY ++ P ILL Sbjct: 240 GMACLHVLFIRQGKILGSRSYYPKIPADTKLDEVVQTFLGQFYLQGSQNRTLPAEILLDF 299 Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367 E LLE S + G KV I +G++ + ++ A NA + T KLS + + L Sbjct: 300 SLPEKELLEASLSELSGRKVHIQPRPRGDRARYLKLARTNAAIALTTKLSQQSTVHQRLA 359 Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427 + + R+E +D SH MG V VV NG V+++YR++N+ + DD Sbjct: 360 SLAEFAGIK-KVHRMECFDISHTMGEQTVASCVVFDGNGPVRSEYRRYNI--AGITPGDD 416 Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487 A M VL RR+ + I+ PD++ +DGGKGQL+ A V L+ Sbjct: 417 YAAMNQVLRRRYGKAIEQ---------------TRIPDIIFIDGGKGQLAQALEVFGSLD 461 Query: 488 VE---NRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 VE N +I +AKG R AG+E F + +G L+ P L+ IQ +RDE+H AIT Sbjct: 462 VEWNKNHPKLIGVAKGSDRKAGLETLFFEAEGGGKALSSDSPALHVIQHIRDESHNHAIT 521 Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR+RR K S L+ I GIGP R+++LL+ G ++ + +S E +A + IS +A K Sbjct: 522 GHRQRRDKVKKTSTLESIEGIGPKRRQMLLKYMGGLQPLRNASVEEIAKVPSISYSLAEK 581 Query: 603 IYNHFH 608 IYN Sbjct: 582 IYNALK 587 >gi|16803274|ref|NP_464759.1| excinuclease ABC subunit C [Listeria monocytogenes EGD-e] gi|224503811|ref|ZP_03672118.1| excinuclease ABC subunit C [Listeria monocytogenes FSL R2-561] gi|254828594|ref|ZP_05233281.1| uvrC [Listeria monocytogenes FSL N3-165] gi|32130304|sp|Q8Y7P0|UVRC_LISMO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|16410650|emb|CAC99312.1| uvrC [Listeria monocytogenes EGD-e] gi|258600992|gb|EEW14317.1| uvrC [Listeria monocytogenes FSL N3-165] Length = 603 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 181/622 (29%), Positives = 299/622 (48%), Gaps = 45/622 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY + + + ++ +I + + VT + Sbjct: 13 LPDQPGCYLMKDRQGTIIYVGKAKILKNRVRSYFSGTHDS-KTQRLVQEIVDFEYIVTSS 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 VEALLLE N+IK+ PRFNI L+DDK++P+I IT+ + P L R +G YFGP+ Sbjct: 72 NVEALLLEINLIKKHDPRFNIRLKDDKTYPFIKITN-ERHPRLIITRQVKKDKGKYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A + L R + LR C+ + CL + + +C PC ++ + KY E Sbjct: 131 PNVYAANEVKRILDRLYPLRKCSTLP----NKVCLYYHLGQCLAPCVFDVEASKYKEMQD 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E FL+GG +K + + M +A ++E A RD++ A+ N Sbjct: 187 EIVAFLNGGYKTVKNDLMKKMQEAAENMEFEKAGEFRDQINAIETTMEKQKMTMNDFVDR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +++ + + P+ Sbjct: 247 DVFGYAIDKGWMCVQVFFIRQGKLIERDVSQFPFYNDADEDFLTFIGQFYQKANHIPPQE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS----T 358 I L + + ++ + KI VP++G K+ +++ A NA + +K Sbjct: 307 IYLPNDVDSEAVQAVVP------DTKIIVPQRGNKKDLVKLAYKNAKIALNEKFMLLERN 360 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E ++ + +P R+E +DNS+I G V MV + KN YRK+ + Sbjct: 361 EERTVGAVERLGEAMGIPTPS-RVEAFDNSNIHGTDPVSAMVTFLDGKPSKNDYRKYKIK 419 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD A MR V+ RR+ +++K PD++++DGGKGQ+ + Sbjct: 420 T--VEGPDDYATMREVIRRRYWRVLKEG--------------LPMPDLILIDGGKGQIDS 463 Query: 479 AQGVL-KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ VL +L ++ I + +AK K F E + L Y +QR++DE Sbjct: 464 AKDVLTNELGLD--IPVAGLAKDDKHRTSQ-LLFGDPLEIVPLERNSQEFYLLQRMQDEV 520 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R K S LD I G+GP RK+ LL+ FG++K + +S E + G+ Sbjct: 521 HRFAITFHRQLRSKTGFQSILDGIPGVGPGRKKKLLKHFGSMKKLKEASIEEIKEA-GVP 579 Query: 597 KKIACKIYNH---FHKNTSHTP 615 +A +++ H F++ +T Sbjct: 580 LNVAEEVHKHITAFNEKAKNTE 601 >gi|77918168|ref|YP_355983.1| excinuclease ABC subunit C [Pelobacter carbinolicus DSM 2380] gi|90110992|sp|Q3A734|UVRC_PELCD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|77544251|gb|ABA87813.1| Excinuclease ABC subunit C [Pelobacter carbinolicus DSM 2380] Length = 612 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 194/621 (31%), Positives = 309/621 (49%), Gaps = 32/621 (5%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTCT 65 P GVY M AG V YVGKA NL+ R++SY ++ +I ++ ++++I VT T Sbjct: 10 PTASGVYLMKGEAGTVFYVGKAKNLRSRLRSYFSEHGDNRPQIRFLLKRVHDIETIVTDT 69 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EAL+LE +IK+ +PR+NI LRDDK++ + + + + P L R YFGP+ Sbjct: 70 EKEALILENTLIKKYRPRYNINLRDDKTYLSLRLDPRQEFPMLQLVRRVRRDGALYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 AS AV T+ + R F LR R R+RPCL +QI +CS PC G+IS+E Y V Sbjct: 130 ASSTAVRATLQEIYRIFPLRRHPWESCRSRSRPCLYYQIGQCSAPCHGKISAEDYQRLVD 189 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNRM 242 A L+G + E + M A + +E A RD+L A+ + Sbjct: 190 GALALLAGRESEVVESLQHQMAAAAERMAFEEAARLRDQLRAIEQTVERQKVVEAGGGDQ 249 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D L+ + F G+ ++ L+ + + ++ R + D P+ Sbjct: 250 DVVGLHREGGEVELAILFVREGKVIDRRSYNLEWRLDEEEL-LSTFLQRFYGRDVCIPDR 308 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 +LL E + +L +Q G KV++ P +G +RK++ A NA S ++ S + Sbjct: 309 VLLPFLPEGSEVLAEWLSEQRGKKVQVLAPLRGTRRKLVALAARNAEESFRERGSRREAR 368 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 Q +L++ ++ L P RIE +D S++ G +VG M V+ + K YR F + V Sbjct: 369 QGVLEEIARRLHLTRFPHRIECFDISNVQGRFSVGSMAVLSDGEPDKGAYRHFRIRS--V 426 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 + DD A + V ++ S PD +++DGGKGQL+ V Sbjct: 427 EGSDDYASLYEV---------------LRRRLERGLREESLPDFILMDGGKGQLNIVCTV 471 Query: 483 LKKLNVENRITIISIAK--------GPKRSAGMEKFF-VKKGEALVLNMRDPILYFIQRL 533 L +LN+ RI + IAK G E+FF + ++ L P L+ ++RL Sbjct: 472 LDELNLTGRIDVAGIAKSRVMANVRGKAVERSEERFFLPGRKNSVNLRQGSPALFMLERL 531 Query: 534 RDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDEAHRFAIT HRK R+++ S L+EI G+G R++ LL+ FG++K + +S + L ++ Sbjct: 532 RDEAHRFAITHHRKLRRRSTLGSVLEEIPGVGEKRRKALLKHFGSLKAVQAASLDELRAM 591 Query: 593 EGISKKIACKIYNHFHKNTSH 613 G+ +A +I+ F + + Sbjct: 592 PGLPAALAERIHAAFQERKTS 612 >gi|257465342|ref|ZP_05629713.1| excinuclease ABC subunit C [Actinobacillus minor 202] gi|257451002|gb|EEV25045.1| excinuclease ABC subunit C [Actinobacillus minor 202] Length = 590 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 210/607 (34%), Positives = 328/607 (54%), Gaps = 32/607 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D G ++YVGKA +L+KR+ SY S + + ++SQI +I T+T +E EALLLE Sbjct: 1 MYDDKGTIIYVGKAKDLKKRLSSYFRSTLASRKTEALVSQIAHIDTTITHSETEALLLEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK +P++N+LLRDDKS+PYIL+T KH+ P L R S I G YFGP+ + AV +T Sbjct: 61 NYIKENQPKYNVLLRDDKSYPYILLT-KHQHPRLASFRGSKKIAGEYFGPYPNAGAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHEAKKFLSG 193 +N LQ+ F +R C DS +++R+RPCL +QI RC PC S +Y + V + FL G Sbjct: 120 LNLLQKLFPIRQCEDSYYKNRSRPCLQYQIGRCLAPCVEGVYSQREYDQQVEYVRLFLQG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMDCFSLYHN 250 + + E + M +A D+E+A RD++ + + + +D S+ + Sbjct: 180 KDQQVIEHLIGKMEKAAEDLDFEAAARFRDQIQQVRAVTEKQFVSNERLDDLDIISIAYQ 239 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLS 306 +AC+ F G+ G+ ++F K + + A++ F+ QFY + P I++ Sbjct: 240 HGIACVHILFVRQGKVLGSRSYFPKVPNHTELAELSDTFIGQFYLQMNQHRTIPHQIIID 299 Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366 E LE +Q G+KV IT +GEK + + A NA + T +L + Q Sbjct: 300 HPVSEVDALEKVLSEQAGHKVSITDKVRGEKSRYLALAKTNAMAALTLQLKQDARIQTRY 359 Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426 + +LP I R+E +D SH MG V VV ENG +K+ YR+FN+ + D Sbjct: 360 EALQAVLSLPKIA-RMECFDISHTMGEQTVASCVVFDENGPLKSDYRRFNIEG--ITGGD 416 Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486 D A M L +R+ + + E+ PD++ +DGGKGQL+ A L Sbjct: 417 DYAAMEQALLKRYDKPLPPEK---------------IPDIIFIDGGKGQLNRALETFANL 461 Query: 487 NVE---NRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542 VE ++ +I +AKG +R AG+E + K + + L P L+ IQ +RDE+H AI Sbjct: 462 KVEWDKSKPLLIGVAKGVERKAGLETLLISKWDKEIHLPPDSPALHLIQHIRDESHNHAI 521 Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 + HRK+R+KA S L+ I+G+G R++ LL+ G ++ + ++ E + S+ GIS +A Sbjct: 522 SGHRKKRQKAFTESGLEAISGVGAKRRQALLKYLGGMQGVKAATLEEIQSVPGISASLAE 581 Query: 602 KIYNHFH 608 I++ H Sbjct: 582 TIFDTLH 588 >gi|184200852|ref|YP_001855059.1| UvrABC system protein C [Kocuria rhizophila DC2201] gi|229558036|sp|B2GH80|UVRC_KOCRD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|183581082|dbj|BAG29553.1| UvrABC system protein C [Kocuria rhizophila DC2201] Length = 689 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 195/673 (28%), Positives = 323/673 (47%), Gaps = 68/673 (10%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFTV 62 + +P PGVY+ D GRV+YVGKA NL+ R+ SY + + M++ +++TV Sbjct: 12 QDIPTNPGVYRFRDEHGRVIYVGKAKNLRNRVSSYFAPLHQLAPKTRAMVTTAAAVQWTV 71 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +E E+L LE IK PRFNI RDDKS+PY+ +T +P R YF Sbjct: 72 VGSEFESLQLEYTWIKEFAPRFNIAYRDDKSYPYLAVTMSEDVPRAMVTRGEKKPGNRYF 131 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFR---HRTRPCLLFQIKRCSGPCTGEISSEK 179 GP++ A+ T+++L R F +R+C V++ RPCLL I +CS PC G IS E+ Sbjct: 132 GPYSQAWAIRDTLDALLRVFPVRTCTTGVYQRAERSGRPCLLGYIDKCSAPCVGNISQEE 191 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + E + +F++G ++ R MN+A D+E+A RD + AL + N + Sbjct: 192 HRELADDLCRFMAGHAKPYIRELTRQMNEAAECMDFETAAARRDDVGALERVFERNTVVL 251 Query: 240 NRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 D F++ ++ A +Q G+ RG + + + T AQ+++ L+Q Y + Sbjct: 252 TDSTDADFFAIAEDELEAAVQVFHVRGGRIRGQRGWITEKVEDVTTAQLMTNLLQQVYGE 311 Query: 297 K-------------------------------------PCPENILLSEEAEETSLLEISF 319 P + +S +E + Sbjct: 312 AQSGLAPAASGRRRTARHGSEDVVGQHRRTSELAYRQDTIPRAVHVSVLPDEADEIRAWL 371 Query: 320 FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFAL 375 + G +V + P++G+K +++E NA ++ T S + L+ + L Sbjct: 372 SELRGSQVTVQRPQRGDKAQLLETVAENARQALTLHKSRRAGDLTTRSASLQQLQEALGL 431 Query: 376 PHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVL 435 P RIE YD SH+ G + V MVV + K++YRKF++ + +DD A M V+ Sbjct: 432 PDALMRIECYDISHVQGTNVVASMVVFEDGLPRKSEYRKFSITGD--AARDDTASMYDVI 489 Query: 436 ERRFSQLIKNE-----------ENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484 RRFS+ ++ + E + +F P++VI+DGG Q++AAQ L Sbjct: 490 HRRFSRHVEQQRRAAEKGVSTGEVAADDDEGTTRAFAYPPNLVIVDGGPPQVAAAQRALD 549 Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544 L V + + ++ +AK + E + ++L L+ +QR+RDEAHRFAIT Sbjct: 550 DLRVTD-VHVVGLAKRLE-----EVWVPDDEFPVILPRASEGLFLMQRVRDEAHRFAITF 603 Query: 545 HRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 HR++R KA S LDE+ G+GP +++ LL+ FG+VK + ++ E + ++G +A K+ Sbjct: 604 HRQKRSKAMTVSALDEVPGLGPAKQKALLKHFGSVKKLRAATAEQILEVKGFGPALAVKV 663 Query: 604 YNHFHKNTSHTPT 616 + + T Sbjct: 664 AQALGGEAAASST 676 >gi|269139389|ref|YP_003296090.1| excinuclease ABC subunit C [Edwardsiella tarda EIB202] gi|267985050|gb|ACY84879.1| excinuclease ABC subunit C [Edwardsiella tarda EIB202] Length = 588 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 208/607 (34%), Positives = 324/607 (53%), Gaps = 31/607 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D V+YVGKA +L+KR+ SY + + ++ QI I TVT TE EALLLE Sbjct: 1 MYDAGAEVIYVGKAKDLKKRLASYFRRQLASRKTEALVRQIAQIDVTVTHTETEALLLEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IKR +PR+N+LLRDDKS+P I ++ + P L HR + +G YFGPF + +AV +T Sbjct: 61 NYIKRYQPRYNVLLRDDKSYPLIFLS-AERHPRLAVHRGAKRARGDYFGPFPNANAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193 + LQ+ F +R C DSV+R+R+RPCL +QI+RC GPC +S E+Y V + FLSG Sbjct: 120 LALLQKLFPIRQCEDSVYRNRSRPCLQYQIQRCLGPCVAGLVSDEEYARQVEYVRLFLSG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYNRMDCFSLYHNK 251 + + + + M +A+ +E A RD++ A+ + ++ +D + Sbjct: 180 KDSQVIDALVARMEEASRALRFEEAARLRDQIQAVRRVTERQFISGDHDDIDVIGVAFEA 239 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSE 307 +ACI F GQ G+ ++F + + +T A++L F+ QFY + P IL+ Sbjct: 240 GMACIHVLFIRQGQVLGSRSYFPRVPAGTTLAEVLQTFVGQFYLQGSQMRTLPGEILIDF 299 Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367 + LL S + G ++ I +G++ + ++ A NA + KLS + + L Sbjct: 300 ALPDRQLLADSISELAGRRIHIQSQPRGDRARYLKLARTNASTALNSKLSQQSTILQRLA 359 Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427 + +R+E +D SH MG V VV NG ++++YR++N+ + DD Sbjct: 360 QLEQVLR-RADIQRMECFDISHTMGEETVASCVVFDRNGPLRSEYRRYNISD--ITPGDD 416 Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487 A MR VL RR+ + + E+ PDV+ +DGGKGQL+ A+ V +L Sbjct: 417 YAAMRQVLRRRYGKALNEEK---------------IPDVIFIDGGKGQLAQAKQVFAELE 461 Query: 488 VE---NRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 V + ++ IAKG R AG+E F + +GE L L+ IQ +RDE+H AI Sbjct: 462 VPWDTHHPLLLGIAKGSDRKAGLETLFFEAQGEGFSLAPDSAALHLIQHIRDESHNHAIA 521 Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HRK+R K S L+ I GIGP R++ LL+ G ++ + +S + +A + GIS +A K Sbjct: 522 GHRKKRAKVRSTSALESIEGIGPKRRQQLLKYMGGMQPLRDASVDEIAKVPGISVALAEK 581 Query: 603 IYNHFHK 609 I+ + Sbjct: 582 IHYALKQ 588 >gi|116872605|ref|YP_849386.1| excinuclease ABC subunit C [Listeria welshimeri serovar 6b str. SLCC5334] gi|123463712|sp|A0AHX5|UVRC_LISW6 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|116741483|emb|CAK20607.1| excinuclease ABC, C subunit [Listeria welshimeri serovar 6b str. SLCC5334] Length = 603 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 180/622 (28%), Positives = 300/622 (48%), Gaps = 45/622 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY + + + ++ +I + + VT + Sbjct: 13 LPDQPGCYLMKDRQGTIIYVGKAKVLKNRVRSYFSGTHDS-KTQRLVQEIVDFEYIVTSS 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 VEALLLE N+IK+ PRFNI L+DDK++P+I IT+ + P L R +G YFGP+ Sbjct: 72 NVEALLLEINLIKKHDPRFNIRLKDDKTYPFIKITN-ERHPRLIITRQVKKDKGKYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A + L R + LR C+ + CL + + +C PC ++ + KY E Sbjct: 131 PNVYAANEVKRILDRLYPLRKCSTLP----NKVCLYYHLGQCLAPCVFDVEASKYKEMQD 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E FL+GG +K + + M A ++E A RD++ A+ N Sbjct: 187 EIVAFLNGGYKTVKNDLMKKMQVAAENMEFEKAGEFRDQINAIETTMEKQKMTMNDFVDR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +++ + + P+ Sbjct: 247 DVFGYAIDKGWMCVQVFFIRQGKLIERDVSQFPFYNDADEDFLTFIGQFYQKANHIPPKE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS----T 358 I L ++ + ++ + KI VP++G K+++++ A NA + +K Sbjct: 307 IYLPDDVDSEAVQAVVP------DTKIIVPQRGNKKELVKLAYKNAKIALNEKFMLLERN 360 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E ++ + +P R+E +DNS+I G V MV + KN YRK+ + Sbjct: 361 EERTVGAVERLGEAMGIPTPS-RVEAFDNSNIHGTDPVSAMVTFLDGKPSKNDYRKYKIK 419 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD A MR V+ RR+ +++K PD++++DGGKGQ+ + Sbjct: 420 T--VEGPDDYATMREVIRRRYWRVLKER--------------LPMPDLILIDGGKGQIDS 463 Query: 479 AQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ V + +L ++ I + +AK K F E + L Y +QR++DE Sbjct: 464 AKDVLINELGLD--IPVAGLAKDDKHRTSQ-LLFGDPLEIVPLERNSQEFYLLQRMQDEV 520 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R K S LD I G+GP RK+ LL+ FG++K + +S E + G+ Sbjct: 521 HRFAITFHRQLRSKTGFQSILDGIPGVGPGRKKKLLKHFGSMKKLKEASVEEIKEA-GVP 579 Query: 597 KKIACKIYNH---FHKNTSHTP 615 +A +++ H F++ +T Sbjct: 580 MNVAEEVHKHITTFNEKAKNTE 601 >gi|169832456|ref|YP_001694096.1| excinuclease ABC subunit C [Streptococcus pneumoniae Hungary19A-6] gi|229557868|sp|B1IAG1|UVRC_STRPI RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|168994958|gb|ACA35570.1| excinuclease ABC, C subunit [Streptococcus pneumoniae Hungary19A-6] Length = 615 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 168/621 (27%), Positives = 290/621 (46%), Gaps = 41/621 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G ++ + +++ M A ++E A +RD + A+ ++ + Sbjct: 182 SMAQEVSDFLKGQDNKIIDELKGKMAAAAQTMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 VPNEVLIPQDIDEEAVKALVDSKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ + + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q+ A+ V+++ + I I + K K E F E + L+ + +QR++ Sbjct: 458 QVHIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDDIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSHT 614 G+ + +A + + + Sbjct: 575 GVPRAVAEAVQRKLNPQEAEA 595 >gi|76875758|emb|CAI86979.1| DNA repair enzyme together with UvrAB; incision nuclease subunit C; repair of UV damage to DNA [Pseudoalteromonas haloplanktis TAC125] Length = 586 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 215/602 (35%), Positives = 325/602 (53%), Gaps = 27/602 (4%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 MLD +V+YVGKA +L+KR+ SY SN + ++S I N+ T+T TE EALLLE Sbjct: 1 MLDSDNQVIYVGKAKHLKKRVSSYFRSNITDSKTRVLVSNICNVEVTLTNTETEALLLEN 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N+IK+ +PR+NILLRDDKS+PYIL+T+ HK P L HR S ++G YFGPF S AV ++ Sbjct: 61 NLIKKYQPRYNILLRDDKSYPYILLTN-HKHPRLAFHRGSRKVKGEYFGPFPSAGAVSES 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194 + +Q+ F +R C D +R R+RPCL +Q+KRCS PC ++S E Y E V +KFL+G Sbjct: 120 LRLMQKIFPIRQCEDVYYRARSRPCLQYQLKRCSAPCVNKVSDEDYTEQVDYVRKFLTGK 179 Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCFSLYHNKN 252 +H + + + M A+ + ++E A RD++ L +Q N MD H Sbjct: 180 SHEVIADLIKKMEAASQQLNFELAAKVRDQIMLLRKMQEQQSISGNFAEMDVVGFAHLNG 239 Query: 253 LACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLSEE 308 L I + G+ T+F K +S+ +IL+ FL Q+Y + I+L E Sbjct: 240 LNGIHLLMIRDHKVLGSKTYFPKVPKDSSEQEILTSFLGQYYLAPGATGRIAKEIILPFE 299 Query: 309 AEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKD 368 +E+ +L + + KV + V +GE+ + ++ A NA S T K ST+ S Sbjct: 300 IQESDVLGQALTQISERKVTLKVVTRGERAQYLQLANKNALNSITVKQSTQDSINKRYAQ 359 Query: 369 FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDC 428 L I R+E +D SH MG + V VV G +YR++N+ + DD Sbjct: 360 LKATLRLDDIT-RMECFDISHTMGENTVASCVVFDSQGPNTKEYRRYNV--TGITGGDDY 416 Query: 429 AMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNV 488 A M L +R+++L+ ++ PDV+ +DGGKGQL A+ Sbjct: 417 AAMEFALNKRYNKLVDEDK---------------IPDVIFIDGGKGQLGRAEQYFATWPH 461 Query: 489 ENRITIISIAKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRK 547 ++ +AKG R G+E + G + ++ P L+ IQ +RDE+HRFAI HR Sbjct: 462 AKMPLLVGVAKGTSRKPGLETLLIDGGRKTIPMDSDAPALHLIQHIRDESHRFAIAGHRN 521 Query: 548 RRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 +R+K S L+EING+G R++ LL+ G ++ + ++ E L + GIS +A KI+NH Sbjct: 522 KRQKQRTQSLLEEINGVGAKRRQTLLKYLGGMQGVKAANIEQLKKVPGISPDMADKIFNH 581 Query: 607 FH 608 H Sbjct: 582 LH 583 >gi|167768134|ref|ZP_02440187.1| hypothetical protein CLOSS21_02689 [Clostridium sp. SS2/1] gi|317499776|ref|ZP_07958031.1| excinuclease ABC [Lachnospiraceae bacterium 5_1_63FAA] gi|167709658|gb|EDS20237.1| hypothetical protein CLOSS21_02689 [Clostridium sp. SS2/1] gi|291560163|emb|CBL38963.1| excinuclease ABC, C subunit [butyrate-producing bacterium SSC/2] gi|316892942|gb|EFV15169.1| excinuclease ABC [Lachnospiraceae bacterium 5_1_63FAA] Length = 622 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 189/622 (30%), Positives = 307/622 (49%), Gaps = 21/622 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M + ++YVGKA L R++ Y + N + +I HM+ + + Sbjct: 7 ELKKLPAKPGVYLMHNSKDEIIYVGKAIKLCNRVRQYFQDSRNLSVKIQHMVKNVAYFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE N+IK P++N L+DDK +PYI +T + P + R G Sbjct: 67 IITDSELEALVLENNLIKEHHPKYNTKLKDDKGYPYIKVTVNEEFPRIMLARKMKADGGK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV TI L++ F +R+C + + + RPCL +QIK+C PC G IS E Sbjct: 127 YFGPYTSAGAVNDTIELLRKIFKIRTCNRRLPKDTGKDRPCLYYQIKQCDAPCQGYISKE 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + + E KFL+G + + + M +A+ + ++E A+ +RD L ++ I + Sbjct: 187 EYAKQIEETIKFLNGNYKQVAKMLQEKMQKASDELEFEQAMEYRDLLKSIERIMDRQKIN 246 Query: 239 ---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D ++ + + F G+ G F ++ D ES+ ++L F++QFY Sbjct: 247 TYAFEDRDIIAMAQDDKDVVVSIFFIRQGKLLGREHFHMEADEESSKEEVLGAFVKQFYA 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351 P P I L + E ++E K+ G KV +P +G+K K++E A NA Sbjct: 307 GTPYLPGEIFLEHDISEKEIIEEWLSKKRGAKVHFKIPVRGQKHKMVEMAKENAQNVLRM 366 Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E + + + + R+E +D S+I G V MVV + Sbjct: 367 DREKIKREERRTIGAVHEIEELLGME-GLNRMEAFDISNISGFQTVASMVVFERGKARRR 425 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVIL 469 YRKF L ++ DD A M VL RRF K EE SF +PD++++ Sbjct: 426 DYRKFRLRT--IEGPDDYASMEEVLTRRFLHGKKELEELKEQGKDTTLGSFTKFPDILMM 483 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ++ A VL L ++ I + + K E ++ Sbjct: 484 DGGKGQVNVALRVLDHLGLD--IPVCGMVKDDDHRTRG---LYYNNEEIIFAPNSEAFLL 538 Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 + R++DEAHRFAI HR R K +S LD+I G+GP R++ L++ F + I ++ Sbjct: 539 VTRIQDEAHRFAIEYHRSLRAKGQVHSVLDDIKGVGPKRRKELMKYFKDLGQIKTATVTE 598 Query: 589 LASIEGISKKIACKIYNHFHKN 610 L ++ G+++ A IY FH + Sbjct: 599 LLNVPGMNQSTAESIYGFFHDS 620 >gi|150019667|ref|YP_001311921.1| excinuclease ABC subunit C [Clostridium beijerinckii NCIMB 8052] gi|189038037|sp|A6M2Y5|UVRC_CLOB8 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|149906132|gb|ABR36965.1| excinuclease ABC, C subunit [Clostridium beijerinckii NCIMB 8052] Length = 621 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 198/620 (31%), Positives = 326/620 (52%), Gaps = 19/620 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 + +P PGVY M + G ++YVGKA L+ R++ Y S NH+ ++ M+ + + Sbjct: 7 QLKILPNEPGVYLMKNSLGEIIYVGKAKILKNRVRQYFQNSKNHSEKVKAMVKNVAEFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK+ P++NI L+DDK +P+I +T P ++ R+ + Sbjct: 67 IVTDSEMEALILECNLIKKYSPKYNISLKDDKFYPFIKVTTNEDFPRVFITRNYAKDGNK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVF--RHRTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ + V +TIN +++ F LR+C S+ TR CL + IK+C+ PC G IS Sbjct: 127 YFGPYPNAGDVHETINLIRKIFPLRTCKKSIIEGEKPTRACLNYHIKKCNAPCEGRISKT 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + + E + LSG + +L K+ M A+ ++E A RD++ A+ +I Sbjct: 187 EYKKMIDEIMEVLSGKDRSLLNKLKEEMQSASGNLEFEKAASLRDKMIAIENIAEKQKVF 246 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 N D ++Y ++ CIQ F G+ G F ++ S + I+S F+ FY Sbjct: 247 KSQENDEDFINIYKDEKDCCIQVFFLRDGKITGREHFMIENSSHEEDTTIISQFIISFYG 306 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351 P + E++E LE + G +V + VP +GEK++++E NA + Sbjct: 307 GTPKVPKNIYIPESDEIEALEEFLSIKRGSRVFVKVPIKGEKKEMLELVKNNAKVTLDQF 366 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 + L + + + LK+ + L IP RIE YD S+I G +VG M+V + Sbjct: 367 KDKILRDKEINMISLKEIQELLELDSIPLRIEAYDISNIQGVDSVGSMIVFENGKAKNSD 426 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILD 470 YR+F + VK+ +D MR +L+RRF+ +K EE N K F ++PD++++D Sbjct: 427 YRRFRIKT--VKSANDYDSMREILDRRFTHGLKEIEEIQNKEIKFSSGKFSNFPDLIMMD 484 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ++ A VL+KL ++ I + + K + + L++N ++ I Sbjct: 485 GGKGQVNIALEVLEKLGID--IPVCGLVKDDYHATRG---IIYNNNELIINRNSNLMQMI 539 Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 +R++DE HRFAIT HR R K+ +S LD+I IG R+ LL FG++ I +++ + L Sbjct: 540 RRIQDEVHRFAITYHRSLRDKRTLHSILDDIPNIGQKRRMSLLMKFGSIDNIKKATLDEL 599 Query: 590 ASIEGISKKIACKIYNHFHK 609 E I K A + +F Sbjct: 600 LETESIDTKAANSVLEYFRN 619 >gi|289168414|ref|YP_003446683.1| excinuclease, subunit C [Streptococcus mitis B6] gi|288907981|emb|CBJ22821.1| excinuclease, subunit C [Streptococcus mitis B6] Length = 615 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 169/621 (27%), Positives = 290/621 (46%), Gaps = 41/621 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTVCRKDEAYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G + + + + M A ++E A +RD + A+ ++ + Sbjct: 182 SMAQEVSDFLKGQDDKIIDDLKGKMAVAAQTMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ +E +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 VPNEVLIPQEIDEEAIKALVDTKIVK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ ++ + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRV--------------QHDGLTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L+ + +QR++ Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I+G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSHT 614 G+ + +A + + + Sbjct: 575 GVPRAVAEAVQRKLNPQEAEA 595 >gi|86604931|ref|YP_473694.1| excinuclease ABC subunit C [Synechococcus sp. JA-3-3Ab] gi|119367850|sp|Q2JXP8|UVRC_SYNJA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|86553473|gb|ABC98431.1| excinuclease ABC, C subunit [Synechococcus sp. JA-3-3Ab] Length = 621 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 197/621 (31%), Positives = 303/621 (48%), Gaps = 36/621 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFT 61 +++P PGVY M D ++LYVGK+ L+ R++SY + + + RI M+ Q+ I F Sbjct: 16 LKEIPAEPGVYLMRDATDQILYVGKSKKLRSRVRSYFRFTGDLSPRIQRMVVQVCEIEFI 75 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQG 119 VT E EAL LE N+IK +P +N+LL++DK +PY+ IT P +Y R Q Sbjct: 76 VTDNESEALALEDNLIKTYQPPYNVLLKEDKKYPYLCITWSEPYPQIYITRHRRLNQNQD 135 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 Y+GP+ V + T+ ++R F LR ++ + RPCL + I RC G C G IS E Sbjct: 136 KYYGPYTDVGLLRYTLGLVKRIFPLRQRPKPLY--KDRPCLNYDIGRCPGVCQGLISPEA 193 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + V + G L ++ M QA +E+YE+A +RD++ L + Sbjct: 194 YRKTVAQVAMIFQGQTDELIRELKEKMAQAAQQENYEAAARYRDQIRGLEQLGQSQKVSL 253 Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D +L N + ACIQ G+ G F + + + + Sbjct: 254 PNSTASRDAIALAMNDSRACIQLFQVRAGKLVGRLGFVAENRGDDPALILQRVLQEHYQY 313 Query: 296 DKP--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 P P IL E + LE ++ G KV + P++ K ++IE NA Sbjct: 314 CDPVEIPSEILTQYELPDRDFLESWLSQKKGRKVSLLAPQRQSKAELIELVERNAQLELA 373 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + L+ + LP P+R+E YD SHI G AVG VV + K YR Sbjct: 374 RSQRLAEREAAALERLAEVLDLPEPPRRLEAYDISHIQGSDAVGSQVVFIDGLPAKQHYR 433 Query: 414 KFNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 ++ + V+ D A V RRFS++ ++ PD+V++DG Sbjct: 434 RYKIRNPQVRPGHSDDFASHAEVARRRFSKMTSEDQ----------------PDLVLIDG 477 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GKGQL+A VL +L ++ + + ++AK + E F E L L +DP +Q Sbjct: 478 GKGQLAAVMAVLAELGLD-HLPVFALAKREE-----EIFRPGDPEPLRLPPQDPARLLLQ 531 Query: 532 RLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 RLRDEAHRFA+ HR++RK + S L+EI G+G R++LL+++F ++ I ++ E LA Sbjct: 532 RLRDEAHRFALAYHRQQRKLRQQASVLEEIPGLGKQRQKLLMEAFRSLARIQVATEEQLA 591 Query: 591 SIEGISKKIACKIYNHFHKNT 611 + GI K+A +IY +FH Sbjct: 592 QVPGIGPKLARQIYRYFHPEA 612 >gi|119510472|ref|ZP_01629605.1| excinuclease ABC subunit C [Nodularia spumigena CCY9414] gi|119464894|gb|EAW45798.1| excinuclease ABC subunit C [Nodularia spumigena CCY9414] Length = 628 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 198/621 (31%), Positives = 312/621 (50%), Gaps = 29/621 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTVT 63 ++P PGVY M D R++Y+GK+ L+ R++SY SN+ +HRI M+ Q+ I F VT Sbjct: 23 EIPSEPGVYFMRDGEDRIIYIGKSKKLRSRVRSYFQDSNHKSHRIATMVQQVTEIEFIVT 82 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQGSY 121 TE EAL LEAN+IK+ +P FN+LL+DDK +PY+ IT P ++ R ++ + Sbjct: 83 DTEAEALALEANLIKQHQPYFNVLLKDDKKYPYVCITWSEDYPRIFITRKRQIGKLRDKF 142 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GP+ + + +N +R F LR +F + RPCL + + RC G C IS E+Y Sbjct: 143 YGPYTDTGLLREILNISKRIFALRQRPQPLF--KDRPCLNYDLGRCPGVCQQLISPEEYR 200 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + V + G L + + M A ++E A RD+++ L + Sbjct: 201 KTVQKVAMVFQGRTQELIDILTAQMQTAAEALNFELAARIRDQISGLKSLTADQKVSLPD 260 Query: 242 ----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D +L +K ACIQ GQ G F + +E IL L Y Sbjct: 261 DTVSRDALALASDKERACIQLFQIRAGQLVGRLAFIADSHAE--PGAILQRVLESHYQTA 318 Query: 298 P---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P IL+ E + +L ++ G KV I P++ K +++E NA + Sbjct: 319 DAVEIPAEILVQHELPDAEILADVLTQRKGRKVTILAPQRQTKAELVEMVERNAEYELQR 378 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + ++D LP +P RIE YD SHI G +AV VV + K YR Sbjct: 379 MQKLSDRNHEAIQDLANILDLPDLPHRIEGYDISHIQGSNAVASQVVFIDGLPGKQHYRH 438 Query: 415 FNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472 + + V + D A + V++RRF + ++ + P WPD++++DGG Sbjct: 439 YKIKNPTVTSGHSDDFASLAEVIQRRFRKYGEDSQ-------LARVGNPDWPDLIMIDGG 491 Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532 KGQLSA VL+++++ + ++S+AK + E F + + L N P + ++R Sbjct: 492 KGQLSAVVAVLQEMDLLEDLRVVSLAKQRE-----EIFLPGESQPLETNAEQPGVQLLRR 546 Query: 533 LRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 LRDEAHRFA++ HR++R K S LDEI G+G R++ LL F +V I +++P LA Sbjct: 547 LRDEAHRFAVSFHRQQRSDKLKRSRLDEIPGLGHHRQKQLLGHFRSVDYIRQATPAQLAE 606 Query: 592 IEGISKKIACKIYNHFHKNTS 612 + GI ++A +IY++FH + Sbjct: 607 VPGIGTRLAQEIYDYFHPASG 627 >gi|325958893|ref|YP_004290359.1| UvrABC system protein C [Methanobacterium sp. AL-21] gi|325330325|gb|ADZ09387.1| UvrABC system protein C [Methanobacterium sp. AL-21] Length = 590 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 196/611 (32%), Positives = 317/611 (51%), Gaps = 40/611 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P PGVY + D A R+LYVGKA +L+KR+KSY ++ + +++Q +++ + Sbjct: 7 DPDDLPLVPGVYLLKDSADRILYVGKAKSLKKRVKSYFR-SDLDPKTRALMNQFHHLEYI 65 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT TE EAL+LE+N+IK+ PR+NI L+DDK +PYI +T+ K P + R Y Sbjct: 66 VTDTEKEALILESNLIKKHMPRYNIRLKDDKRYPYIRVTN-EKFPRVIITRRVLDDGSYY 124 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GPF + + + ++ F +R ++ PCL +QI C PC +IS +Y Sbjct: 125 YGPFTEATTLRRLVKFIKALFKVRD-----CKNMDGPCLNYQIDLCRAPCDNKISEAEYK 179 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 V F G + + + M A ++E A + RD++ ++ + + Sbjct: 180 RMVDNVSMFFEGKYDQIMDALKEEMMDAAENHEFEKAAVLRDQINSVEDVLEKQKMEFTG 239 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-K 297 D + ++ LAC+ G+ G F + S+ +I++ FL+Q+Y + Sbjct: 240 DLDQDVIASASDEELACVAVFSVRNGKIIGREDFLMGGGENSSEEKIVTAFLKQYYMGPR 299 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P I+L ++ E+ L+E ++ V I VP +G + ++ + NA L+ Sbjct: 300 HVPSKIILHKDIEDRKLIEEWLSEKREANVGIEVPVEGIEFRLAKMVSKNAQI----LLN 355 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + + L D K + IPKRIE YD S+I G +AVG MVV + K+ YR++ + Sbjct: 356 HQKEVKGALVDLKKYLGIAKIPKRIEAYDISNISGQNAVGSMVVFEDGTPKKSAYRRYKI 415 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 DD AMM+ +L RRF+ LI N+++ PD+V++DGGKGQL+ Sbjct: 416 ETE---GPDDYAMMKEMLTRRFTNLINNQDSE--------------PDLVLVDGGKGQLN 458 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A V LN+ +I +AK + F + L+L L +QR+RDEA Sbjct: 459 IALEVFYSLNI--NYPVIGLAKEFEH-----VFIPQTPSPLILPRNSEALLLLQRIRDEA 511 Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT H++ R K SPLD+I G+G R+ LLL+ FG+++ I + + L ++GIS Sbjct: 512 HRFAITYHKQLRSKEFKSSPLDKIPGVGNKRRMLLLKHFGSMENIMNADLDELQQVKGIS 571 Query: 597 KKIACKIYNHF 607 KK+A I++HF Sbjct: 572 KKLANIIHDHF 582 >gi|332529104|ref|ZP_08405068.1| excinuclease ABC subunit C [Hylemonella gracilis ATCC 19624] gi|332041327|gb|EGI77689.1| excinuclease ABC subunit C [Hylemonella gracilis ATCC 19624] Length = 663 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 204/644 (31%), Positives = 322/644 (50%), Gaps = 44/644 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PGVY+ D AG +LYVGKA NL+KR+ SY + RI HM+ +I + TV + Sbjct: 23 LPSLPGVYRYFDAAGGLLYVGKARNLKKRVSSYFQKRHDGTRIGHMVGKIVRMETTVVRS 82 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILI---------TDKHKIPALYKHRDSST 116 E EALLLE N+IK +PR+NIL RDDKS+PY+ + + + +R + Sbjct: 83 EAEALLLENNLIKTQQPRYNILFRDDKSYPYLKMTAASATAATNEASAWTRMAYYRGAVE 142 Query: 117 IQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176 + Y+GP+ S AV++ I LQ+ F LR+C D+VF +RTRPCLL+QIKRCSGPC G I Sbjct: 143 KKHHYYGPYPSAWAVKEAIVLLQKVFRLRTCEDTVFSNRTRPCLLYQIKRCSGPCVGLIQ 202 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 E Y + V A+ FL G + +++ M + K ++E A RD+++ALS + + Sbjct: 203 PEAYAQDVAHAQAFLDGETQQVLQQLEARMLGHSEKLEFEQAAELRDQISALSSVLHQQA 262 Query: 237 SIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 + +D ++ + AC+ G++ G +F ++ Sbjct: 263 VESVDDHDVDILAVKIHGGRACVNLAMVRGGRHLGDRAYFPSHVEDAAALHFAEAEGDDA 322 Query: 294 YTDKPCPENILLSEEAEET-----------------SLLEISFFKQYGYKVKITVPKQGE 336 + P E +L + + L + +Q G +++ +G+ Sbjct: 323 HESGPSVETQVLEAFIAQHYVQVPAVPTLITGAQVSAELMEALTEQTGLRMRAVHQPRGQ 382 Query: 337 KRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPK-------RIEIYDNSH 389 +R ++ A NA + L+ E S Q + + LP + RIE +D SH Sbjct: 383 RRIWLDMAQTNADLQLARLLAEEGSQQARTRALAEALDLPQVSDPAGLDELRIECFDISH 442 Query: 390 IMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIK--NEE 447 G + VV + ++YR++ +++ DD A MR VL RR+ ++ +E Sbjct: 443 TAGEATQASCVVFHHHKMQSSEYRRY--KIDNITPGDDYAAMRQVLTRRYERIAARLSEA 500 Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507 + PD+V++DGGKGQ+S A+ V ++L ++ I I+ + KG R G+ Sbjct: 501 RREGSTDSVIPAQAVMPDLVLVDGGKGQVSMAREVFEQLGLDLSI-IVGVEKGEGRKVGL 559 Query: 508 EKFFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--SPLDEINGIG 564 E+ G + + L L + ++RDEAHRFAIT R R K S L++I GIG Sbjct: 560 EELVFADGRDKVYLGKDSAALMLVAQIRDEAHRFAITGMRAARAKVRTGGSRLEDIPGIG 619 Query: 565 PLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 P R+ LLQ FG + + +S E LA++EG+S ++A IY H Sbjct: 620 PKRRARLLQRFGGARGVEAASVEDLAAVEGVSHELAEIIYRALH 663 >gi|256788436|ref|ZP_05526867.1| excinuclease ABC subunit C [Streptomyces lividans TK24] gi|289772326|ref|ZP_06531704.1| excinuclease ABC, C subunit [Streptomyces lividans TK24] gi|289702525|gb|EFD69954.1| excinuclease ABC, C subunit [Streptomyces lividans TK24] Length = 728 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 185/683 (27%), Positives = 317/683 (46%), Gaps = 80/683 (11%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 ++P+ PGVY+ D RV+YVGKA +L++R+ +Y + R M++ ++ +TV Sbjct: 13 EIPDSPGVYRFRDEHRRVIYVGKAKSLRQRLANYFQDLAHLHPRTRTMVTTAASVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE + IK PRFN+ RDDKS+PY+ +T + P + R YFG Sbjct: 73 STEVEALQLEYSWIKEYDPRFNVKYRDDKSYPYLAVTMNEEFPRVQVMRGQKKKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P+ A+ T++ L R F +R+C+ VF++ RPCLL I +CS PC G I+ + + Sbjct: 133 PYGHAWAIRDTVDLLLRVFPVRTCSAGVFKNAARTGRPCLLGYIGKCSAPCVGRITPDDH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + E F++G ++ R M +A + +YE A RD + AL + + Sbjct: 193 WDLADEFCDFMAGRTGTYLRRLERQMAEAAEEMEYERAARLRDDIGALKKAMEKSAVVLA 252 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D ++ ++ A +Q G+ RG + E T ++ + L+Q Y ++ Sbjct: 253 DATDADLIAVAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEEITTGALVEHALQQLYGEE 312 Query: 298 ---PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P+ +L+ + ++ ++ G V + +P++G+K+ ++E NA ++ Sbjct: 313 KGDAVPKEVLVPALPDPVEPVQQWLAERRGSGVSLRIPQRGDKKALMETVQRNAQQALVL 372 Query: 355 KLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + S L++ + L P RIE YD SH+ G V MVV + K+ Sbjct: 373 HKTKRASDLTTRSRALEEIAEALDLDSAPLRIECYDISHLQGDDVVASMVVFEDGLARKS 432 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE------------- 457 +YR+F + + QDD M V+ RRF + + +E + Sbjct: 433 EYRRFQIKG--FEGQDDVRSMHEVITRRFRRYLAEKERTGEWADGEGLADDARHPNGDAA 490 Query: 458 ------YSFPSWPD--------------------------------------VVILDGGK 473 + PD +V++DGG+ Sbjct: 491 QNGDAAPDDGAAPDDGAARTDGRGLTDGQELTDGPALKDDDGRPKRFAYPPQLVVVDGGQ 550 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 Q++AAQ L +L +++ I + +AK + E + ++ + +VL LY +QR+ Sbjct: 551 PQVAAAQRALDELGIDD-IAVCGLAKRLE-----EVWLPREDDPVVLPRTSEGLYLLQRV 604 Query: 534 RDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDEAHRFAIT R +R K PLD++ G+G RK+ L++ FG+VK + ++ + + + Sbjct: 605 RDEAHRFAITYQRAKRAKRFRAGPLDDVPGLGETRKQALIKHFGSVKKLRSATIDQICEV 664 Query: 593 EGISKKIACKIYNHFHKNTSHTP 615 GI +K A + + T P Sbjct: 665 PGIGRKTAETVAVALARATPAAP 687 >gi|21674621|ref|NP_662686.1| excinuclease ABC, subunit C [Chlorobium tepidum TLS] gi|32130301|sp|Q8KBI0|UVRC_CHLTE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|21647822|gb|AAM73028.1| excinuclease ABC, subunit C [Chlorobium tepidum TLS] Length = 626 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 187/633 (29%), Positives = 302/633 (47%), Gaps = 50/633 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVT 63 +P PGVY+ + AG V+YVGKA NL+ R++SY +S + M+S I ++ +T Sbjct: 22 TLPTSPGVYRFSNAAGTVIYVGKARNLRNRVRSYFNSQGRQPGKTAVMVSHIADLNVIIT 81 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +EVEAL+LE N+IK LKPR+N+ L+DDKS+P+++IT+ + P ++ R YFG Sbjct: 82 SSEVEALILENNLIKELKPRYNVNLKDDKSYPWLVITN-ERFPRIFLTRQVRRDGSLYFG 140 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFR-----HRTRPCLLFQIKRCSGPCTGEISSE 178 P+ + ++ + F +RSC + R R CL + I +C GPC G S E Sbjct: 141 PYTEASQLRLILDLIGSIFPVRSCKYKLTEEAVASGRYRVCLDYHIHKCKGPCEGLQSEE 200 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + E L G L ++ M + + +E A + ++ L + Sbjct: 201 EYQAMIREIVTLLKGKTSALLRDLSAEMQKKAKELKFEEAAALKAQIEGLKRYAERQKIV 260 Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D F++ ++ AC G+ G+ +L + +L+ F+ +Y Sbjct: 261 STEAIDRDVFAVAAGEDDACGVVFRIREGKLIGSRHTYLSNTGNTPLPNLLASFVEHYYL 320 Query: 296 DKP--CPENILLSEEAEETSLLEISFF----KQYGYKVKITVPKQGEKRKIIEQALINAH 349 + P P+ ++L E E L + + +V+ TVP+ GEK +I L NA Sbjct: 321 ETPDLIPQELMLQAELPEEELEALRQLLSSRQTERRQVRFTVPRIGEKAHLIAMCLDNAK 380 Query: 350 RSHTQKLSTE------ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVG 403 + + + L+ + L +P+RIE +DNSH G V MV Sbjct: 381 HHLHEFMVQKKLRGEIARKSPALESLKQVLHLGKLPERIECFDNSHFQGTDYVSSMVTFV 440 Query: 404 ENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSW 463 K+ YRKF L + DD A MR + RR+ + E Sbjct: 441 SGKPKKSDYRKFRLKS--FEGSDDYAAMREAVTRRYGGSLAGE--------------LPL 484 Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMR 523 PD+V++DGGKGQ++ A VL++L ++ + + +AK + E + + + L Sbjct: 485 PDLVLIDGGKGQVNVAWQVLQELGLD--LPVAGLAKRLE-----EIYVPNEPDPYNLPKT 537 Query: 524 DPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMIS 582 P L +Q+LRDEAHRFAIT HRK R + + L I G+G LL+ FG+V+ +S Sbjct: 538 SPALKLLQQLRDEAHRFAITYHRKLRSDRTIRTELTGIKGVGEKSAEKLLKHFGSVESVS 597 Query: 583 RSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615 ++S + L+++ G +K A IY +F N P Sbjct: 598 KASIDELSAVAG--RKTAESIYRYF--NAGDAP 626 >gi|134300888|ref|YP_001114384.1| excinuclease ABC subunit C [Desulfotomaculum reducens MI-1] gi|134053588|gb|ABO51559.1| Excinuclease ABC subunit C [Desulfotomaculum reducens MI-1] Length = 588 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 202/595 (33%), Positives = 320/595 (53%), Gaps = 19/595 (3%) Query: 26 GKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRFTVTCTEVEALLLEANMIKRLKPRF 84 GKA +L+ R++SY + ++ M+ + ++ F VT +E+EAL+LE N+IK +P++ Sbjct: 2 GKAVSLKNRVRSYFQAGAKQAPKVKAMLGRAVDLDFIVTDSEMEALILENNLIKEHRPKY 61 Query: 85 NILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFL 144 NILL+DDK++PYI +T + + P +Y R + YFGPF +V AV +T+ L++ F L Sbjct: 62 NILLKDDKTYPYIKVTVQEEFPRVYLTRRVLKDRARYFGPFTNVGAVNETMRLLKKIFPL 121 Query: 145 RSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIAR 204 R+C R RPCL + IKRC GPC + + Y E V+E FL G +L +++ + Sbjct: 122 RTCKQRKLSPRDRPCLNYHIKRCLGPCCNLVERQTYRETVNEVVLFLEGRQEDLMKRLRQ 181 Query: 205 NMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHNKNLACIQTCFF 261 M +A K ++E A RD+L A+ I + D ++ + +C+ F Sbjct: 182 RMEEAAEKLEFEKAAELRDQLLAVEKIVERQKVVSTDLVDQDVIAMARGFDESCLTVFFI 241 Query: 262 HFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-CPENILLSEEAEETSLLEISFF 320 G+ G +FL+ +I++ F++QFY P +L+SEE + LL Sbjct: 242 RGGKLIGREHYFLEGTDTLERGEIMTTFIQQFYNQTEFIPAEVLISEEIAKPELLRSWLS 301 Query: 321 KQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLSTEISHQMILKDFTKKFALP 376 + G KV I PK+G+K K++E A NA ++ Q+ + + L + L Sbjct: 302 ELRGSKVTIKAPKRGDKHKLVEMAAQNALLSLEQAKLQRQANREAVDGALAELMAALGLE 361 Query: 377 HIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLE 436 + P R+E YD S+I G V MVV E K+QYR+F + V+ +D A M L Sbjct: 362 NPPHRMECYDISNIQGTETVSSMVVFEEGRPKKDQYRRFKIRW--VEGPNDFASMHETLT 419 Query: 437 RRFSQLIKNEENLNFHP-KKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITII 495 RRFS+ + ++ L+ ++ F PD++I+DGGKGQLSAA+ + + I Sbjct: 420 RRFSRAKEEQDLLSRGELTPKQAKFTRLPDLIIIDGGKGQLSAARQAMLEQGFA-HIATF 478 Query: 496 SIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAY 554 +AK + F + + + L L +QRLRDEAHRFA+T HRK R K+ Sbjct: 479 GLAKEEEL-----LFAPGRPDPIRLPRESKGLQMLQRLRDEAHRFAVTYHRKLRTKRNLK 533 Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 S LDEI+GIG +R+R L +++ ++ I ++S E LA I G++ K A +YN+F + Sbjct: 534 SLLDEIDGIGAVRRRELYKAYKNLESIKQASVEELAKIPGMNTKAAEAVYNYFRE 588 >gi|56421210|ref|YP_148528.1| excinuclease ABC subunit C [Geobacillus kaustophilus HTA426] gi|81346720|sp|Q5KWH6|UVRC_GEOKA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|56381052|dbj|BAD76960.1| excinuclease ABC subunit C [Geobacillus kaustophilus HTA426] Length = 590 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 181/613 (29%), Positives = 300/613 (48%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG Y M D G V+YVGKA +L+ R++SY H + ++ +I + + VT + Sbjct: 12 LPEQPGCYLMKDKHGTVIYVGKAKSLKARVRSYFTGT-HDGKTQRLVEEIADFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 EAL+LE N+IK+ P++N++L+DDKS+P+I IT K P L R G YFGP+ Sbjct: 71 NAEALILEMNLIKKHDPKYNVMLKDDKSYPFIKIT-AEKHPRLLITRKVKKDGGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A +T L R + LR C+ +R CL + + +C PC +S E+ V Sbjct: 130 PNVQAANETKKLLDRLYPLRKCSTLP----SRACLYYHMGQCLAPCVHPVSDEQNKAMVE 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 + +FL+GG ++K ++A M++A ++E A +RD++AA+ + N Sbjct: 186 QIVRFLNGGYEDVKRELAEKMHEAAETLEFERAKEYRDQIAAIEMTMEKQKMMLNDFIDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F ++K C+Q F G+ + + P+ Sbjct: 246 DVFGYAYDKGWMCVQVFFLRQGKLIERDVSIFPLYQDPDEEMLTFLGQFYAKAHHLKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 ++L + + E+ V + PK+G+K++++E A NA Sbjct: 306 VVLPSDIDGELARELL-------GVAVVQPKKGKKKELVELASKNAAIALKEKFYFIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E ++ ++ +P RIE +DNS+I G V +VV + K +YRK+ + Sbjct: 359 EERTIKAVERLGERLGIPAPR-RIEAFDNSNIYGADPVSALVVFLDGKPAKKEYRKYKVK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V +D MR V+ RR+++++K PD++I+DGGKG LSA Sbjct: 418 T--VAGPNDYETMREVVRRRYTRVLKEG--------------LPLPDLIIIDGGKGHLSA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 + VL+ +L ++ + + +AK K E + + L+ + Y +QR++DE Sbjct: 462 VRDVLENELGLD--VPLAGLAKDEKHRTS-ELLAGDPPDVVPLDRQSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFA+ HRK R+K +S LD+I G+G RK+ LL FG+VK + ++ E L I Sbjct: 519 HRFAVMFHRKTRQKTMFHSVLDDIPGVGEKRKKALLNYFGSVKKMKEATVEELQRA-NIP 577 Query: 597 KKIACKIYNHFHK 609 + +A KIY H+ Sbjct: 578 RAVAEKIYEKLHE 590 >gi|289434483|ref|YP_003464355.1| excinuclease ABC, C subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170727|emb|CBH27267.1| excinuclease ABC, C subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313633645|gb|EFS00403.1| excinuclease ABC subunit C [Listeria seeligeri FSL N1-067] gi|313638206|gb|EFS03454.1| excinuclease ABC subunit C [Listeria seeligeri FSL S4-171] Length = 603 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 181/622 (29%), Positives = 300/622 (48%), Gaps = 45/622 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY + + + ++ +I + + VT + Sbjct: 13 LPDQPGCYLMKDRQGTIIYVGKAKILKNRVRSYFSGTHDS-KTQRLVQEIVDFEYIVTSS 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 VEALLLE N+IK+ PRFNI L+DDK++P+I IT + P L R +G YFGP+ Sbjct: 72 NVEALLLEINLIKKHDPRFNIRLKDDKTYPFIKIT-SERHPRLIITRQVKKDKGKYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A + L R + LR C+ + CL + + +C PC ++ + KY E Sbjct: 131 PNVYAANEVKRILDRLYPLRKCSTLPNQ----VCLYYHLGQCLAPCVFDVEASKYKEMQD 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E FL+GG +K + + M A ++E A RD++ A+ N Sbjct: 187 EIVSFLNGGYKTVKNDLMKKMQLAAENMEFEKAGEFRDQINAIETTMEKQKMTMNDFVDR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +++ + T+ P+ Sbjct: 247 DVFGYAIDKGWMCVQVFFIRQGKLIERDVSQFPFYNDADEDFLTFIGQFYQKTNHIPPKE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS----T 358 I L ++ + ++ + KI VP++G K+ +++ A NA + +K Sbjct: 307 IYLPDDVDSEAVQAVVP------DTKIIVPQRGNKKDLVKLAYKNAKIALNEKFMLLERN 360 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E ++ + +P R+E +DNS+I G V MV + KN YRK+ + Sbjct: 361 EERTVGAVERLGEAMGIPTPS-RVEAFDNSNIHGTDPVSAMVTFLDGKPSKNDYRKYKIK 419 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD A MR V+ RR+ +++K PD++++DGGKGQ+ + Sbjct: 420 T--VEGPDDYATMREVIRRRYWRVLKEG--------------LPMPDLILIDGGKGQIDS 463 Query: 479 AQGVL-KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ VL +L ++ I + +AK K F E + L Y +QR++DE Sbjct: 464 AKDVLTNELGLD--IPVAGLAKDDKHRTSQ-LLFGDPLEIIPLERNSQEFYLLQRMQDEV 520 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R K S LD I G+GP RK+ LL+ FG++K + +S + + G+ Sbjct: 521 HRFAITFHRQLRSKTGFQSILDGIPGVGPGRKKKLLKHFGSMKKLKEASIQEIKEA-GVP 579 Query: 597 KKIACKIYNH---FHKNTSHTP 615 +A +++ H F++ ++T Sbjct: 580 LNVAEEVHKHITAFNEKANNTE 601 >gi|254478381|ref|ZP_05091759.1| excinuclease ABC, C subunit [Carboxydibrachium pacificum DSM 12653] gi|214035639|gb|EEB76335.1| excinuclease ABC, C subunit [Carboxydibrachium pacificum DSM 12653] Length = 617 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 194/619 (31%), Positives = 334/619 (53%), Gaps = 18/619 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +PE PGVY M D G ++YVGKA L+ R++ Y + +NH ++ M+S + + + Sbjct: 6 KLKLLPEKPGVYLMKDEEGNIIYVGKASVLKNRVRQYFQNTDNHPPKVKVMLSHVEDFEY 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT TE+EAL+LE N+IK+ KP++N+LL+DDK++PYI IT P + R Sbjct: 66 IVTDTELEALMLECNLIKKYKPKYNVLLKDDKNYPYIKITVAEDYPRIMFTRKIDMDGSK 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV +TI +++ F +R+C ++ + + R CL + I CS PCTG I E Sbjct: 126 YFGPYGSAFAVRETIKLVRKMFPIRTCNVNIEKSLGKVRECLYYHIGLCSAPCTGRIEKE 185 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + V +A FL G L EK+ M +A + +E A RD++ A+ I Sbjct: 186 EYRKLVDQAVMFLEGKREWLVEKLKEEMQKAADELRFEEAARLRDQIFAIEKISEKQKVT 245 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D S+ + ++A I+ F G+ G +++K +I+S F++QFY Sbjct: 246 SISEDEQDVISMARSDDIAHIEVFFVREGKLSGREHYYMKNTEGMGREEIISSFIKQFYE 305 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P P+ I++ E EE LLE ++ G +V ITVP +G+K+++++ NA + Sbjct: 306 SSPSVPKEIIIDVELEEKDLLEDWLSQKRGNRVSITVPLRGKKKELVDMVYQNAVEALKN 365 Query: 355 KLSTEISHQM--ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 ++ + + + + + RIE YD S++ G VG MVV + K++Y Sbjct: 366 EILAREKILKDPAVLELSNLLGIEYPK-RIEAYDISNVRGEDNVGSMVVFVDGKPKKSEY 424 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP-KKQEYSFPSWPDVVILDG 471 RKF + V+ QDD MR ++ERRF ++ ++ + K++ F PD++++DG Sbjct: 425 RKFTIK--YVEGQDDYQSMREMIERRFLHALEEKKQIEEGTLSKEKAKFIEMPDLILVDG 482 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 G G ++AA V++KL + + + + K + V + + + + Sbjct: 483 GIGHVNAALEVIEKLGIS--VPVYGMVKDSRHRTRG---LVGVSGEVQMPVTGRAFRLVA 537 Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 ++++EAHRFAIT HR+R+ K + L I GIG R ++L ++FG+++ I ++S E L Sbjct: 538 QIQEEAHRFAITFHRERQSKRFKTDLLNIKGIGEKRAKVLYEAFGSIEEIKKASLEELKK 597 Query: 592 IEGISKKIACKIYNHFHKN 610 ++G++++ A +Y +FH Sbjct: 598 VKGMNERSAKAVYEYFHGE 616 >gi|255321277|ref|ZP_05362442.1| excinuclease ABC subunit C [Acinetobacter radioresistens SK82] gi|262379982|ref|ZP_06073137.1| excinuclease ABC, C subunit [Acinetobacter radioresistens SH164] gi|255301653|gb|EET80905.1| excinuclease ABC subunit C [Acinetobacter radioresistens SK82] gi|262298176|gb|EEY86090.1| excinuclease ABC, C subunit [Acinetobacter radioresistens SH164] Length = 599 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 189/610 (30%), Positives = 303/610 (49%), Gaps = 30/610 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 M PGVY+ML G +LYVGKA NL+ R+ SY + ++++I +I+ +T Sbjct: 15 NMTTLPGVYRMLGKDGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVARIYDIQTLITR 74 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFG 123 +E EALLLE N+IK +P +NI+LRDDKS+ YI ++ P + R Q G +FG Sbjct: 75 SETEALLLEQNLIKLHRPPYNIMLRDDKSYVYIFVSSDKPYPRVASGRGKGKHQVGKFFG 134 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ S + T+ L++ F +R C +S F R RPCL +QIKRCS PC G +S E Y E Sbjct: 135 PYPSAYSARDTLVVLEKLFNVRQCENSYFAQRKRPCLQYQIKRCSAPCVGLVSPEDYQED 194 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNR 241 V +FL G L +++ M +A K ++E A+ +RDRL L +Q Sbjct: 195 VKNTIRFLQGDTKELNQELIAKMEEAAEKLEFEKAVFYRDRLGLLREVQAQQAVYKVKGE 254 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DKPCP 300 D ++ + + C+Q G+ G ++F ++ + + ++ P Sbjct: 255 ADILAIAYQAGVTCVQIMHVRNGRMLGGKSYFPDMQNDDLGQMLSDFMANFYFQVADEVP 314 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 ++++ T LE + ++G KV+I + + + E A++N + +LS + Sbjct: 315 AELIVNVALPNTQELEQAIQTEFGKKVQIKHKVRETRAEWQELAVMNVQHAIKGQLSNHL 374 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 + + RIE +D SH MG + + VV + G K YR+F + Sbjct: 375 ELHERFHQLEQV--MGRPIDRIECFDISHTMGEAPIASCVVFDQGGARKRDYRQFAIQD- 431 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 + DD A MR L RR+ + + PD++++DGGKGQL A Sbjct: 432 -ITGGDDYAAMRQALTRRYKKSL-------------------LPDLLLIDGGKGQLHMAM 471 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 V++ L ++ ++ ++KG R G+E G + L L+ IQ++RDEAHRF Sbjct: 472 EVMQDLGLDAF--MVGVSKGEGRKPGLETLHFTDGRKIQLAEDHKALHLIQQVRDEAHRF 529 Query: 541 AITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AIT HR +R K S L+ I G+GP R+R LL FG ++ + ++S + L + G+ + Sbjct: 530 AITRHRAKRDKRRAGSVLEAIPGLGPKRRRDLLTHFGGIQGVLKASEKELMVVPGLGPAL 589 Query: 600 ACKIYNHFHK 609 A IY H+ Sbjct: 590 ARTIYKILHE 599 >gi|111024123|ref|YP_707095.1| excinuclease ABC subunit C [Rhodococcus jostii RHA1] gi|119367828|sp|Q0S0J9|UVRC_RHOSR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|110823653|gb|ABG98937.1| excinuclease ABC subunit C [Rhodococcus jostii RHA1] Length = 727 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 183/674 (27%), Positives = 303/674 (44%), Gaps = 70/674 (10%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA +L+ R+ SY + R M++ ++ +TV Sbjct: 13 TIPVDPGVYKFRDPHGRVIYVGKAKSLRSRLNSYFADVSTLHPRTRQMVTTAGSVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE N IK PRFN+ RDDK++P + +T + P L+ +R YFG Sbjct: 73 STEVEALQLEYNWIKEFDPRFNVRYRDDKTYPVLAVTLNEEYPRLFVYRGPRRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F R+C+ VF+ RPCLL I +CS PC G +S+ ++ Sbjct: 133 PYSHAWAIRETLDLLLRVFPARTCSAGVFKRHNQIGRPCLLGYIDKCSAPCVGRVSAAEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + V + FLSG L ++ M +A+ + D+E+A RD + AL + Sbjct: 193 RKIVEDFCDFLSGRTDRLVRQLEARMQEASEELDFETAARLRDDVGALRRALEKQAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE------------STNAQI 285 D + ++ A +Q G+ RG + ++ + S + Sbjct: 253 DGTDADVAAFATDELEAAVQVFHVRGGRVRGQRGWVVEKAGDVIDWASVDSEAGSDLPLL 312 Query: 286 LSYFLRQFYTDKP--------------CPENILLSEEAEETSLLEISFFKQYGYKVKITV 331 + FL QFY ++ P +L+ + ++ G V++ V Sbjct: 313 VEQFLTQFYGEQAALSGATDQEAGTSGVPREVLVPVLPPDAEQVQEWLSGLRGSAVRLRV 372 Query: 332 PKQGEKRKIIEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDN 387 P++G+K+ + E NA + Q S L+ + L P RIE D Sbjct: 373 PQRGDKKALAETVQRNATEALQQHKLRRAGDFTSRSAALQGIQEALDLDSAPLRIECVDI 432 Query: 388 SHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKN- 445 SH+ G V +VV + K+ YR + + + DD A + V RRF + ++ Sbjct: 433 SHVQGTDVVASLVVFEDGLPRKSDYRHYAIKEAAGDGRSDDVASIAEVTRRRFLRHNRDV 492 Query: 446 ------------------------EENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 E + F P++ ++DGG Q++AA Sbjct: 493 GVLRAEAAGADADQVSGGDGGDLAPEAAIDPQTGRPRRFAYPPNLFVVDGGAPQVAAASA 552 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 VL +L + + + +I +AK + E + + + ++L LY +QR+RDEAHRFA Sbjct: 553 VLDELGITD-VAVIGLAKRLE-----EVWVPGEEDPVILPRTSESLYLLQRVRDEAHRFA 606 Query: 542 ITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 IT HR +R + S LD + G+G R++ L+ FG+V + ++S E + ++ GI A Sbjct: 607 ITFHRSKRSRRMTASALDSVRGLGETRRKALVTHFGSVARLKQASVEEITAVPGIGTATA 666 Query: 601 CKIYNHFHKNTSHT 614 + Sbjct: 667 KAVLTALGAEEPSA 680 >gi|262276854|ref|ZP_06054647.1| excinuclease ABC subunit C [alpha proteobacterium HIMB114] gi|262223957|gb|EEY74416.1| excinuclease ABC subunit C [alpha proteobacterium HIMB114] Length = 612 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 245/609 (40%), Positives = 365/609 (59%), Gaps = 22/609 (3%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 PGVYQ+ D +++YVGKA NL R+ +Y S+ R MI+ N I T E Sbjct: 20 NSPGVYQVFDEKNKIIYVGKAKNLPNRLSNYSSSSTQPIRTERMIASTNRIDTISTLNES 79 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EALLLEAN+IK+ KPR+N+LL+DDKSFPYI I H P + K R + YFGPFAS Sbjct: 80 EALLLEANLIKKNKPRYNVLLKDDKSFPYIQIRSSHDYPQITKFRGKHNDKDIYFGPFAS 139 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 + + TI LQ+ F +R C D+ F+ R+RPC+L+QIKRCSGPCTGEI+ +Y + V E Sbjct: 140 IASANWTIKMLQKVFQIRVCDDNTFKGRSRPCILYQIKRCSGPCTGEITKSEYSKTVDEC 199 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR---MDC 244 FL+G + ++++K+++ M + + + ++E A I RDR+ +L++IQ+ + N D Sbjct: 200 SSFLNGKSRDIQKKMSQEMEKESDRLNFEKAAILRDRIKSLTYIQSSQNIQKNNLKDADL 259 Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304 + +N+ C+ F+ QN G+ F+ K D E ++ IL FL QFY +K P ++ Sbjct: 260 IVSHRKENITCVVIFFYRSKQNWGSQYFYPKHDHEDSDEHILKSFLTQFYENKEPPSELV 319 Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364 L+ E L++ +F K+Y K+ I K K +++ A+ NA K+ ++ + Sbjct: 320 LNLTPENHELIKSAFEKKYNKKILI---KISPKNSMVKNAVKNAQEQLQIKILSQEKNND 376 Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424 +L +KF L P IE+YDNSH G S +G ++ G++GF+KN+YRKFN+ +K+ Sbjct: 377 LLISMGEKFKLGFTPSLIEVYDNSHNQGDSNIGALIAFGKDGFIKNRYRKFNIKNTKIKS 436 Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484 DD MM V++RRFS++ + + PD++++DGGKGQ S + L Sbjct: 437 NDDYGMMTEVIQRRFSKV-------------DSLTDENVPDLLLIDGGKGQYSVVRNKLN 483 Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544 L + II+I+KG +R+ G EKF + G + L+ DP+L+ QR+RDEAHRFAITT Sbjct: 484 DLGFHG-LKIIAISKGKERNKGNEKFISEDG-VIELDKNDPVLFLTQRIRDEAHRFAITT 541 Query: 545 HRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 HRK++ K SPLDEI+GIG RK+ LL FG+ K I +S + + SI+GI+ A K+ Sbjct: 542 HRKKKTKQMFKSPLDEIDGIGSKRKKALLSHFGSAKAIEGASLDDIKSIDGINDSSAEKV 601 Query: 604 YNHFHKNTS 612 YN FHK + Sbjct: 602 YNFFHKKKN 610 >gi|326203844|ref|ZP_08193706.1| excinuclease ABC, C subunit [Clostridium papyrosolvens DSM 2782] gi|325985942|gb|EGD46776.1| excinuclease ABC, C subunit [Clostridium papyrosolvens DSM 2782] Length = 613 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 186/619 (30%), Positives = 315/619 (50%), Gaps = 24/619 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 +++P+ GVY M D G V+YVGKA L+ R++ Y S NH ++ M+S+I+ + Sbjct: 7 ELKKLPDKSGVYIMKDANGVVIYVGKAVVLKNRVRQYFQQSANHPPKVQAMVSKISEFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V +EVEAL+LE N+IK+ KP++NILL+DDK +PYI +T + P + K R Sbjct: 67 IVVDSEVEALMLECNLIKKYKPKYNILLKDDKHYPYIKVTLNEEYPRILKTRRVDKDGAK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP++S AV TI++L++ F L++C ++ R +TRPCL + +K+C PC G ++ + Sbjct: 127 YFGPYSSGFAVNDTIDTLKKLFPLKTCNKNLPRDIGKTRPCLNYHMKQCLAPCQGGVNRD 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 +Y + + + +FL G + I M A + D+E A + R++++++ + Sbjct: 187 EYRDMMKKICRFLGGQYDEIINDIRMQMESAAEQLDFEKAALLRNKISSIKQLSESQKVL 246 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D + C+Q F G+ G F + ++ LS F++QFY Sbjct: 247 STDLEDRDIIGYSADSTDLCVQVFFVRNGRVIGREHFMFEGEANEDKGYSLSTFIKQFYN 306 Query: 296 D-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 + P I+L E +++ + ++ G+KV + VP++G+ K++ NA + Sbjct: 307 TVQFVPSEIVLQSEVDDSETIAKWLTEKRGFKVALRVPQRGDLVKLVHMVSENAEITLKL 366 Query: 355 KLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + + K L P RIE YD S+ V MVV + Sbjct: 367 HRERQSREGIVPAEGMSQLVKLLGLEEAPARIESYDISNTGSTEIVASMVVFENGRPARQ 426 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 +YRKF + ++ Q+D M+ L RR ++ + +E + F PD++++D Sbjct: 427 EYRKFKMKS--IEQQNDYGSMQETLFRRLNRAKREKEE-----AAENAKFSKLPDLILVD 479 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GG ++AA+ V+++L +I +AK + V G L+ P+L I Sbjct: 480 GGSNHVNAAKQVIEELGYSFKI--AGMAKDDRHRTKS---LVYMGNEYDLSGNMPLLRLI 534 Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 ++DE HR A+ +RK R K+ S LDE+ GIG RK+ L++ F +V I ++ L Sbjct: 535 TEIQDETHRVAVEYNRKLREKRYVKSELDEVEGIGQTRKKALIRHFKSVAAIKKADVAQL 594 Query: 590 ASIEGISKKIACKIYNHFH 608 ++GIS+KIA KIY +F+ Sbjct: 595 QEVDGISEKIAKKIYEYFN 613 >gi|20808370|ref|NP_623541.1| excinuclease ABC subunit C [Thermoanaerobacter tengcongensis MB4] gi|32130303|sp|Q8R8M9|UVRC_THETN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|20516981|gb|AAM25145.1| Nuclease subunit of the excinuclease complex [Thermoanaerobacter tengcongensis MB4] Length = 617 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 194/619 (31%), Positives = 334/619 (53%), Gaps = 18/619 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +PE PGVY M D G ++YVGKA L+ R++ Y + +NH ++ M+S + + + Sbjct: 6 KLKLLPEKPGVYLMKDEEGNIIYVGKASVLKNRVRQYFQNTDNHPPKVKVMLSHVEDFEY 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT TE+EAL+LE N+IK+ KP++N+LL+DDK++PYI IT P + R Sbjct: 66 IVTDTELEALMLECNLIKKYKPKYNVLLKDDKNYPYIKITVAEDYPRIMFTRKIDMDGSK 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV +TI +++ F +R+C ++ + + R CL + I CS PCTG I E Sbjct: 126 YFGPYGSAFAVRETIKLVRKMFPIRTCNVNIEKSLGKVRECLYYHIGLCSAPCTGRIEKE 185 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + V +A FL G L EK+ M +A + +E A RD++ A+ I Sbjct: 186 EYRKLVDQAVMFLEGKREWLVEKLKEEMQKAADELRFEEAARLRDQIFAIEKISEKQKVT 245 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D S+ + ++A I+ F G+ G +++K +I+S F++QFY Sbjct: 246 SINEDEQDVISMARSDDIAHIEVFFVREGKLSGREHYYMKNTEGMGREEIISSFIKQFYE 305 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P P+ I++ E EE LLE ++ G +V ITVP +G+K+++++ NA + Sbjct: 306 SSPSVPKEIIIDVELEEKDLLEDWLSQKRGNRVSITVPLRGKKKELVDMVYQNAVEALKN 365 Query: 355 KLSTEISHQM--ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 ++ + + + + + RIE YD S++ G VG MVV + K++Y Sbjct: 366 EILAREKILKDPAVLELSNLLGIEYPK-RIEAYDISNVRGEDNVGSMVVFVDGKPKKSEY 424 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP-KKQEYSFPSWPDVVILDG 471 RKF + V+ QDD MR ++ERRF ++ ++ + K++ F PD++++DG Sbjct: 425 RKFTIK--YVEGQDDYQSMREMIERRFLHALEEKKQIEEGTLSKEKAKFIEMPDLILVDG 482 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 G G ++AA V++KL + + + + K + V + + + + Sbjct: 483 GIGHVNAALEVIEKLGIS--VPVYGMVKDSRHRTRG---LVGVSGEVQMPVTGRAFRLVA 537 Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 ++++EAHRFAIT HR+R+ K + L I GIG R ++L ++FG+++ I ++S E L Sbjct: 538 QIQEEAHRFAITFHRERQSKRFKTDLLNIKGIGEKRAKVLYEAFGSIEEIKKASLEELKK 597 Query: 592 IEGISKKIACKIYNHFHKN 610 ++G++++ A +Y +FH Sbjct: 598 VKGMNERSAKAVYEYFHGE 616 >gi|261418309|ref|YP_003251991.1| excinuclease ABC subunit C [Geobacillus sp. Y412MC61] gi|297529163|ref|YP_003670438.1| excinuclease ABC, C subunit [Geobacillus sp. C56-T3] gi|319767731|ref|YP_004133232.1| excinuclease ABC, C subunit [Geobacillus sp. Y412MC52] gi|261374766|gb|ACX77509.1| excinuclease ABC, C subunit [Geobacillus sp. Y412MC61] gi|297252415|gb|ADI25861.1| excinuclease ABC, C subunit [Geobacillus sp. C56-T3] gi|317112597|gb|ADU95089.1| excinuclease ABC, C subunit [Geobacillus sp. Y412MC52] Length = 590 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 181/613 (29%), Positives = 300/613 (48%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG Y M D G V+YVGKA +L+ R++SY H + ++ +I + + VT + Sbjct: 12 LPEQPGCYLMKDRHGTVIYVGKAKSLKARVRSYFTGT-HDGKTQRLVEEIADFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 EAL+LE N+IK+ P++N++L+DDKS+P+I IT K P L R G YFGP+ Sbjct: 71 NAEALILEMNLIKKHDPKYNVMLKDDKSYPFIKIT-AEKHPRLLITRKVKKDGGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A +T L R + LR C+ +R CL + + +C PC +S E+ V Sbjct: 130 PNVQAANETKKLLDRLYPLRKCSTLP----SRACLYYHMGQCLAPCVHPVSDEQNKAMVE 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 + +FL+GG ++K ++A M++A ++E A +RD++AA+ + N Sbjct: 186 QIVRFLNGGYEDVKRELAEKMHEAAEALEFERAKEYRDQIAAIEMTMEKQKMMLNDFIDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F ++K C+Q F G+ + + P+ Sbjct: 246 DVFGYAYDKGWMCVQVFFLRQGKLIERDVSIFPLYQDPDEEMLTFLGQFYAKAHHLKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 ++L + + E+ V + PK+G+K++++E A NA Sbjct: 306 VVLPSDIDGELARELL-------GVAVVQPKKGKKKELVELASKNAAIALKEKFYFIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E ++ ++ +P RIE +DNS+I G V +VV + K +YRK+ + Sbjct: 359 EERTIKAVERLGERLGIPAPR-RIEAFDNSNIYGADPVSALVVFLDGKPAKKEYRKYKVK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V +D MR V+ RR+++++K PD++I+DGGKG LSA Sbjct: 418 T--VAGPNDYETMREVVRRRYTRVLKEG--------------LPLPDLIIIDGGKGHLSA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 + VL+ +L ++ + + +AK K E + + L+ + Y +QR++DE Sbjct: 462 VRDVLENELGLD--VPLAGLAKDEKHRTS-ELLAGDPPDVVPLDRQSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFA+ HRK R+K +S LD+I G+G RK+ LL FG+VK + ++ E L I Sbjct: 519 HRFAVMFHRKTRQKTMFHSVLDDIPGVGEKRKKALLNYFGSVKKMKEATVEELQRA-NIP 577 Query: 597 KKIACKIYNHFHK 609 + +A KIY H+ Sbjct: 578 RAVAEKIYEKLHE 590 >gi|116670629|ref|YP_831562.1| excinuclease ABC subunit C [Arthrobacter sp. FB24] gi|189038021|sp|A0JWP2|UVRC_ARTS2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|116610738|gb|ABK03462.1| Excinuclease ABC subunit C [Arthrobacter sp. FB24] Length = 669 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 193/652 (29%), Positives = 319/652 (48%), Gaps = 48/652 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + ++P PGVY+ D GRV+YVGKA +L+ R+ SY + + M+ +++ + Sbjct: 10 QTGEIPTNPGVYRFRDPHGRVIYVGKAKSLRSRLNSYFANPGGLLPKTYAMVHAASSVEW 69 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV +E+E+L LE IK KPRFN++ RDDK++PY+ +T K P + R Sbjct: 70 TVVASELESLQLEYTWIKEFKPRFNVVFRDDKTYPYLAVTMGEKFPRVQVLRGERRKGTR 129 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISS 177 YFGP+ A+ +T+++L R F +RSC+ V + RPCLL I +C+ PC G ++ Sbjct: 130 YFGPYT-AGAIRETMDTLLRVFPVRSCSPGVLKRAQASGRPCLLGYIDKCAAPCVGRVTP 188 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E++ + F+ G ++ ++M A + DYE A RD + AL + N Sbjct: 189 EEHRALAEDFCSFMGGEAKRFIGRLEKDMAAAVAELDYERAARVRDDIIALRKVFERNAV 248 Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D F+L+ ++ A +Q G+ RG + ++ + T ++ + L+Q Y Sbjct: 249 VLAEDTDADVFALHEDELEAAVQVFHVRGGRVRGQRGWVVEKVEDFTTPDLVEHLLQQVY 308 Query: 295 TDK-----PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH 349 ++ P +L+ EE + L G KV I VP++G+K ++ NA Sbjct: 309 GEEGETQGRLPREVLVPEEPSNAAELAQWLAGLRGAKVDIRVPRRGDKAALMSTVRENAE 368 Query: 350 RSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405 + S + + L++ + LP RIE +D SH+ G + V MVVV + Sbjct: 369 HALKLHKSRRAGDLTNRSLALQELQEALDLPVALLRIECFDISHVQGTNVVASMVVVEDG 428 Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL---------------- 449 K+ YRKF++ DD A M VL RRF ++ + Sbjct: 429 LPKKSDYRKFSITGA--AAVDDTAAMHDVLTRRFRNYLQEKAAQAEAAQLPGHQAALEAM 486 Query: 450 ------NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR 503 + F P++V++DGGK Q++AA L +L +++ + ++ +AK + Sbjct: 487 AVASMQDTTTPAPRAKFAYPPNLVVVDGGKPQVNAAARALAELGIDD-VYVVGLAKRLE- 544 Query: 504 SAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEING 562 E + ++L LY +QR+RDEAHRFAIT HR++R KA S LD + G Sbjct: 545 ----EVWLPDSDFPVILPRTSEGLYLLQRIRDEAHRFAITFHRQKRGKAMTVSALDSVPG 600 Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G +++ LL FG+VK I +S LA+ +GI +A I +HF + + Sbjct: 601 LGEAKRKALLAQFGSVKSIRTASAAELATAKGIGPSLADAIVSHFSNGAAAS 652 >gi|323705114|ref|ZP_08116690.1| excinuclease ABC, C subunit [Thermoanaerobacterium xylanolyticum LX-11] gi|323535540|gb|EGB25315.1| excinuclease ABC, C subunit [Thermoanaerobacterium xylanolyticum LX-11] Length = 618 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 194/619 (31%), Positives = 317/619 (51%), Gaps = 18/619 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +P+ PGVY M D++G+++YVGKA L+ R++ Y + N ++ M+ + + + Sbjct: 7 KLKLLPDKPGVYIMKDLSGKIIYVGKAVILKNRVRQYFQNQANQLPKVRTMVKHVADFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT TE+EAL+LE N+IK+ KP++NILL+DDK++PYI IT P + R Sbjct: 67 IVTDTELEALILECNLIKKHKPKYNILLKDDKNYPYIKITVNEDYPRIVFTRKVDMDGAK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP++S AV +TI L+ F LRSC ++ R + R CL + I CS PCTG I+ E Sbjct: 127 YFGPYSSAFAVRETIKLLRHMFPLRSCNRNIERDMGKGRECLYYHIGLCSAPCTGRITKE 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 +Y + + FL G L +K+ M +A ++E A RD++ + Sbjct: 187 EYKKLTDDVLMFLEGKRDVLLKKLKEEMEKAAENMEFEKAAKLRDQIYGIEKTSEKQKII 246 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D S+ + ACIQ F G+ G +F+K + + I++ F++QFY Sbjct: 247 SASLEDQDVISMARSAEDACIQVFFIRDGKVSGREHYFMKNTDDMDRSDIMASFIKQFYD 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--H 352 P P+ I+L + EE +L ++ G KV I VP +G+K+++++ NA + + Sbjct: 307 GAPYVPKEIILDVDMEEKDVLVEWLSEKRGNKVSIVVPSRGKKKELVDMVYENALEALKN 366 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 L E + + + + + RIE +D S+I G V MVV + K+ Y Sbjct: 367 DVSLKMERHKNDSVSELSNLVGIDYAE-RIEAFDISNIRGTDNVASMVVFVDGKPHKSSY 425 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEY-SFPSWPDVVILDG 471 RKF + V+ QDD MR + RR S +K ++ + K++ F PD++++DG Sbjct: 426 RKFIIKT--VEGQDDYGSMREAISRRISHGLKEQKQIETGELKEDKAKFHIMPDLILVDG 483 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 G G + L++LNVE I + + K K GE + + M + Sbjct: 484 GLGHVKTVIEALQQLNVE--IPVYGMVKDSKHRTRG--LVSPDGE-IDMPMTGRAFRLVA 538 Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +++EAHRFAIT H+ + K S L I GIG R + L +F T+ I ++ + L Sbjct: 539 EIQNEAHRFAITFHKDTKSKKLRSDLLNIPGIGEKRMKALYNAFKTIDGIKNATVDELKK 598 Query: 592 IEGISKKIACKIYNHFHKN 610 +EG+++K A +Y++F + Sbjct: 599 VEGMNEKAANAVYDYFRSH 617 >gi|326316507|ref|YP_004234179.1| excinuclease ABC subunit C [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373343|gb|ADX45612.1| excinuclease ABC, C subunit [Acidovorax avenae subsp. avenae ATCC 19860] Length = 670 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 213/663 (32%), Positives = 316/663 (47%), Gaps = 66/663 (9%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+ D G +LYVGKA NL+KR+ SY + RI HM+ +I + TV Sbjct: 15 SLPPLPGVYRYFDAQGGLLYVGKARNLKKRVSSYFTKTHGGTRIGHMVGKIARLETTVVR 74 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITD-----------KHKIPALYKHRD 113 +E EALLLE N+IK L PR+NIL RDDKS+PY+ IT + P + +R Sbjct: 75 SEAEALLLENNLIKSLNPRYNILFRDDKSYPYLKITGVAARDGTGEPPGQRFPRVAYYRG 134 Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 S + YFGP+ AV++TI LQ+ F LR+C D+VF +RTRPCLL+QIKRCSGPC Sbjct: 135 SVDKRHRYFGPYPGAWAVKETILLLQKVFRLRTCEDTVFANRTRPCLLYQIKRCSGPCVD 194 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 IS E Y V A L G L E + M + + ++E A R+++ ALS + + Sbjct: 195 LISPEAYALDVRNADAMLRGETKELLEALEARMMAHSERLEFEQAADIRNQITALSRVLH 254 Query: 234 HN---DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE----------- 279 +D ++ AC+ G++ G +F + Sbjct: 255 QQAIETVSDKDVDILAVKVLGGRACVNLAMVRGGRHLGDRPYFPVHVEDAAAVYQLEEGA 314 Query: 280 ----------------------------STNAQILSYFLRQFYTDKPCPENILLSEEAEE 311 S Q+L F+ Q Y P P ++ SE + Sbjct: 315 DGSDGPDGAAETAGPAEASPAAPRTPQRSLEVQVLEAFIAQHYIGVPVPPVLVTSEPVDR 374 Query: 312 TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTK 371 L + Q G +V + ++R ++ A NA + LS E S Q + + Sbjct: 375 ALLEAL--SLQAGIRVGAVHQPREQRRAWLDMAQKNADIQLARLLSEEGSQQARTRALAE 432 Query: 372 KFALPHIPKR---IEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDC 428 LP IE +D SH G + VV + ++YR++ + DD Sbjct: 433 ALDLPMDDLESLTIECFDISHTAGEATQASCVVFHHHRMQSSEYRRY--KIEGITGGDDY 490 Query: 429 AMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNV 488 A MR VL RR+S++++ + + PD+V++DGGKGQ+S A+ V +L + Sbjct: 491 AAMRQVLTRRYSKVVEAQREAGGAEPAPGQA--RLPDLVLIDGGKGQVSMAREVFTELGL 548 Query: 489 ENRITIISIAKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRK 547 E I+ + KG R G+E+ G + L L + ++RDEAHRFAIT R Sbjct: 549 ELS-RIVGVEKGEGRKVGLEELVFADGREKIYLGRDSAALMLVAQIRDEAHRFAITGMRA 607 Query: 548 RRKKAAYS--PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 R K L+EI G+GP ++ LLQ FG V+ ++ +S E LA+++GIS ++A +IY Sbjct: 608 ARAKVRVGGGQLEEIPGVGPKKRARLLQRFGGVRGVAAASVEDLATVDGISLELAQEIYR 667 Query: 606 HFH 608 Sbjct: 668 ALR 670 >gi|296140249|ref|YP_003647492.1| excinuclease ABC, C subunit [Tsukamurella paurometabola DSM 20162] gi|296028383|gb|ADG79153.1| excinuclease ABC, C subunit [Tsukamurella paurometabola DSM 20162] Length = 675 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 185/664 (27%), Positives = 301/664 (45%), Gaps = 66/664 (9%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA +L+ R+ SY R M++ ++ +TV Sbjct: 13 TIPTQPGVYKFRDKHGRVIYVGKAKSLRSRLNSYFADVYGLHPRTYQMVTTAASVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE N IK P+FN+ RDDK++P + +T + P LY +R YFG Sbjct: 73 NTEVEALQLEYNWIKEFDPQFNVRYRDDKTYPMLAVTLNEEYPRLYVYRGPRRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F R+C+ VF+ RPCLL I +CS PC G +++ ++ Sbjct: 133 PYSHAWAIRETLDLLLRVFPARTCSAGVFKRHNQMGRPCLLGYIDKCSAPCIGRVTAAEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + V + FL+G NL +++ +M A+ + D+E A RD ++AL + Sbjct: 193 RQIVDDFCDFLAGKTDNLIKQLENDMLAASEELDFERAARLRDDVSALRKAVEKQAVVLG 252 Query: 241 R---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQI---LSYFLRQFY 294 D + ++ A +Q G+ RG + ++ ++ + + FL QFY Sbjct: 253 DGTDADVIAFSADELEAAVQIFHVRGGRVRGQRGWVVEKPGDAEQNEHAELVEQFLTQFY 312 Query: 295 TD-------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 + P P +L+ ++ L+ + G +V + +P++G+KR ++ Sbjct: 313 GEEAERAKQSGDTAANPVPREVLVPVLPDDADELQDWLSELRGSRVSLRIPQRGDKRTLM 372 Query: 342 EQALINAHRSHTQKLSTE----ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVG 397 E NA + Q + L+ L P RIE D SHI G V Sbjct: 373 ETVERNAAEALHQHKLKRSGDLTARSAALQGLQGALDLDEAPLRIECVDISHIQGSDVVA 432 Query: 398 CMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNE---------- 446 +VV + K+ YR + + DD A + V RRF + + Sbjct: 433 SLVVFEDGLAKKSDYRHYAIKEAAGDGHSDDVASIAEVTRRRFLRHRADAHQEAGDSGAG 492 Query: 447 ---------------------ENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 E + F P++ ++DGG Q +AAQ VL Sbjct: 493 VAASDNGGDLAASDNGGDLAPEAAIDPQTGRPRRFAYPPNLYVVDGGPPQAAAAQAVLDD 552 Query: 486 LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545 L V + + ++ +AK + E + + + ++L L+ +QR+RDEAHRFAI H Sbjct: 553 LGVTD-VAVVGLAKRLE-----EVWVPGEDDPVILPRSSDALFLLQRVRDEAHRFAIGFH 606 Query: 546 RKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 R +R K S LD I G+G RK L++ FG+V + +S E + + GI A + Sbjct: 607 RTKRSKRMTSSALDSIPGLGDTRKAALIRHFGSVAKLRAASLEEIVEVPGIGLTTARTVL 666 Query: 605 NHFH 608 + Sbjct: 667 DALR 670 >gi|296876338|ref|ZP_06900390.1| excision endonuclease subunit UvrC [Streptococcus parasanguinis ATCC 15912] gi|296432628|gb|EFH18423.1| excision endonuclease subunit UvrC [Streptococcus parasanguinis ATCC 15912] Length = 611 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 170/621 (27%), Positives = 294/621 (47%), Gaps = 43/621 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + + +C + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHLGQCMAHTVCHKDEAYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G + + +++ M A ++E A +RD + A+ ++ + Sbjct: 182 GMAQEVSDFLKGQDDKIIDELRLKMTTAAQNMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P IL+ ++ +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 IPNEILIPQDIDEEAVKALVDTKVLK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ K +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSMEKTQGAIENLGKLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+S+++++ + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYSRVMRDG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAA-QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 Q++ A + + ++L ++ I I + K K E F + + L+ + +QR+ Sbjct: 458 QVNIAKRVIQEELGLD--IPIAGLQKNDKHQT-HELLFGDPLQVIELSRTSQEFFLLQRI 514 Query: 534 RDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 +DE HRFAIT HR+ R K ++S LD I G+GP RK+LL++ F ++ I ++ + + ++ Sbjct: 515 QDEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQLLMKHFKSLTKIKEATVDEIVTV 574 Query: 593 EGISKKIACKIYNHFHKNTSH 613 GI + +A + + Sbjct: 575 -GIPRAVAEAVQAKLQQGKQE 594 >gi|293610110|ref|ZP_06692411.1| UvrABC system protein C [Acinetobacter sp. SH024] gi|292827342|gb|EFF85706.1| UvrABC system protein C [Acinetobacter sp. SH024] Length = 599 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 200/611 (32%), Positives = 313/611 (51%), Gaps = 32/611 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 M + PGVY+ML G +LYVGKA NL+ R+ SY + ++++I +I VT Sbjct: 15 NMTQLPGVYKMLGKEGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVARIYDIETLVTR 74 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFG 123 +E EALLLE N+IK+ +P +NI+LRDDKS+ YI ++ P L R Q G +FG Sbjct: 75 SETEALLLEQNLIKQHRPPYNIMLRDDKSYVYIFVSADKPYPRLASGRGKGKHQIGKFFG 134 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ S + T+ LQ+ F +R C +S F R RPCL +QIKRCS PC G IS E Y E Sbjct: 135 PYPSAYSARDTLLVLQKLFNVRQCENSYFSQRKRPCLQYQIKRCSAPCVGLISPEDYKED 194 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNR 241 V+ + +FL G L +++ M QA + ++E A+ +RDRL+ L +Q Sbjct: 195 VNNSIRFLQGDTKELNQELIAKMEQAAAELEFEKAVFYRDRLSLLREVQAQQAVFKVKGE 254 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPC 299 D ++ + + C+Q + G+ G ++F Q+LS F+ FY Sbjct: 255 ADILAIAYQAGVTCVQIMYVRNGRMLGGKSYFPDM-LGDDLGQMLSDFMANFYFQVADEV 313 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P ++++ + LE + +Q+G KV+I + + + +E A +N + +LS Sbjct: 314 PNELIVNIALPDCKELEEALAQQFGKKVQIKSNVRETRAEWLELAEMNVQHAIKGQLSNH 373 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + + P IE +D SH MG + + VV + G K YR+F + Sbjct: 374 LELNERFHQLEQVVGRPVDR--IECFDISHTMGEAPIASCVVFDQGGARKRDYRQFAIQD 431 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A MR L RR+ + I PD++++DGGKGQL A Sbjct: 432 --ITAGDDYAAMRQALTRRYKKAI-------------------LPDLLLIDGGKGQLHMA 470 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 V+++L ++ ++ ++KG R G+E G + L L+ IQ++RDEAHR Sbjct: 471 MEVMQELGLDAF--MVGVSKGEGRKPGLETLHFTDGTKIQLPEDHKALHLIQQVRDEAHR 528 Query: 540 FAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAIT HR +R K+ + S L+ I G+GP R+R LL FG ++ + ++S + L + G + Sbjct: 529 FAITKHRAKRDKRRSTSVLEAIPGLGPKRRRDLLTHFGGIQGVLKASEKELTLVPGFGEM 588 Query: 599 IACKIYNHFHK 609 +A IY H+ Sbjct: 589 MARTIYKILHE 599 >gi|332076451|gb|EGI86914.1| excinuclease ABC, C subunit [Streptococcus pneumoniae GA41301] Length = 615 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 168/620 (27%), Positives = 292/620 (47%), Gaps = 41/620 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDETYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G ++ + +++ M A ++E A +RD + A+ ++ + Sbjct: 182 SMAQEVSDFLKGQDNKIIDELKGKMAAAAQTMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 VPNEVLIPQDIDEEAVKALVDSKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ + + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L+ + +QR++ Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I+G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSH 613 G+ + +A + + + Sbjct: 575 GVPRAVAEAVQRKLNPQETE 594 >gi|325124281|gb|ADY83804.1| excinuclease ABC subunit C [Acinetobacter calcoaceticus PHEA-2] Length = 599 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 200/611 (32%), Positives = 313/611 (51%), Gaps = 32/611 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 M + PGVY+ML G +LYVGKA NL+ R+ SY + ++++I +I VT Sbjct: 15 NMTQLPGVYKMLGKEGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVARIYDIETLVTR 74 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFG 123 +E EALLLE N+IK+ +P +NI+LRDDKS+ YI ++ P L R Q G +FG Sbjct: 75 SETEALLLEQNLIKQHRPPYNIMLRDDKSYVYIFVSADKPYPRLASGRGKGKHQIGKFFG 134 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ S + T+ LQ+ F +R C +S F R RPCL +QIKRCS PC G IS E Y E Sbjct: 135 PYPSAYSARDTLLVLQKLFNVRQCENSYFSQRKRPCLQYQIKRCSAPCVGLISPEDYKED 194 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNR 241 V+ + +FL G L +++ M QA + ++E A+ +RDRL+ L +Q Sbjct: 195 VNNSIRFLQGDTKELNQELITKMEQAAAELEFEKAVFYRDRLSLLREVQAQQAVFKVKGE 254 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPC 299 D ++ + + C+Q + G+ G ++F Q+LS F+ FY Sbjct: 255 ADILAIAYQAGVTCVQIMYVRNGRMLGGKSYFPDM-LGDDLGQMLSDFMANFYFQVADEV 313 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P ++++ + LE + +Q+G KV+I + + + +E A +N + +LS Sbjct: 314 PNELIVNIALPDCKELEEALAQQFGKKVQIKSNVRETRAEWLELAEMNVQHAIKGQLSNH 373 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + + P IE +D SH MG + + VV + G K YR+F + Sbjct: 374 LELNERFHQLEQVVGRPVDR--IECFDISHTMGEAPIASCVVFDQGGARKRDYRQFAIQD 431 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A MR L RR+ + I PD++++DGGKGQL A Sbjct: 432 --ITAGDDYAAMRQALTRRYKKAI-------------------LPDLLLIDGGKGQLHMA 470 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 V+++L ++ ++ ++KG R G+E G + L L+ IQ++RDEAHR Sbjct: 471 MEVMQELGLDAF--MVGVSKGEGRKPGLETLHFTDGTKIQLPEDHKALHLIQQVRDEAHR 528 Query: 540 FAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAIT HR +R K+ + S L+ I G+GP R+R LL FG ++ + ++S + L + G + Sbjct: 529 FAITKHRAKRDKRRSTSVLEAIPGLGPKRRRDLLTHFGGIQGVLKASEKELTLVPGFGEM 588 Query: 599 IACKIYNHFHK 609 +A IY H+ Sbjct: 589 MARTIYKILHE 599 >gi|90413709|ref|ZP_01221698.1| excinuclease ABC subunit C [Photobacterium profundum 3TCK] gi|90325330|gb|EAS41824.1| excinuclease ABC subunit C [Photobacterium profundum 3TCK] Length = 589 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 207/606 (34%), Positives = 326/606 (53%), Gaps = 31/606 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D G V+YVGKA +L+KR+ SY +N + ++ I + TVT TE EAL+LE Sbjct: 1 MYDAVGEVIYVGKAKDLKKRLSSYFRTNVAGEKTRALVKNICKVDVTVTHTETEALILEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK P++N+LLRDDKS+PYI +++ H P L HR + +G YFGP+ AV ++ Sbjct: 61 NYIKLYLPKYNVLLRDDKSYPYIFLSNHH-HPRLSIHRGTKKRKGEYFGPYPDAGAVRES 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193 ++ +Q+ F +R C DSV+ +R+RPCL++QI RC PC + I+ + Y + V A+ FL G Sbjct: 120 LHLMQKLFPIRQCEDSVYANRSRPCLMYQIGRCLAPCVKDLITEKDYEDQVSFARLFLQG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDC---FSLYHN 250 + + + M QA+ ++E A RD++ AL IQ ++ D + H Sbjct: 180 KDRQVIASLVEKMEQASQSLNFEQAATFRDQIQALRRIQEQQFVSHDSEDDLDVVGIAHQ 239 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP----CPENILLS 306 +ACI + G+ G+ ++F K S++ ++LS F+ QFY ++ P I+L Sbjct: 240 NGMACIHALYIRQGKILGSRSYFPKMPSDAELTEVLSSFVTQFYLNQAEGRVIPSVIILG 299 Query: 307 EEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365 E ++ ++ + G K+++ V +G + + ++ A NA + T KLS +++ Sbjct: 300 ENLGDDAGVITETLSDIAGRKIELKVSPRGNRARYLKLAQTNAMTALTSKLSHKMTIHER 359 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 + K L I R+E +D SH MG V VV + G K YR++N+ + Sbjct: 360 FSELRKALNLETIT-RMECFDISHTMGEKTVASCVVFNQEGPFKQDYRRYNI--TGITGG 416 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD A M VLERR+ + ++ E+ PD++ +DGG+GQLS A V+K Sbjct: 417 DDYAAMGQVLERRYGKQMEPEK---------------IPDIIFIDGGRGQLSRAYNVVKP 461 Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 + +I IAKG R AG+E G+ L P L+ IQ +RDE+H AI+ Sbjct: 462 FMDEWPKQPLLIGIAKGVTRKAGLETLIFITGDEFSLPSDSPALHLIQHIRDESHNHAIS 521 Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR +R K S L+++ GIGP R++ LL+ G + + R+S E +A + GISK +A K Sbjct: 522 GHRAQRAKVRKRSALEDVEGIGPKRRQALLKFMGGLHELKRASREEIAKVPGISKALAEK 581 Query: 603 IYNHFH 608 IY+ Sbjct: 582 IYDALQ 587 >gi|303231830|ref|ZP_07318544.1| excinuclease ABC, C subunit [Veillonella atypica ACS-049-V-Sch6] gi|302513508|gb|EFL55536.1| excinuclease ABC, C subunit [Veillonella atypica ACS-049-V-Sch6] Length = 612 Score = 501 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 187/615 (30%), Positives = 310/615 (50%), Gaps = 34/615 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRF 60 +P PGVY D R++YVGKA NL+ R++SY+ ++ + ++T M+ + ++ Sbjct: 9 KVSHLPTTPGVYLWRDQYNRIIYVGKAINLRNRVRSYVRNDANRAPKVTAMMKRAVDVEI 68 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE+EAL+LE +IK KP++NI L+DDK++PY+ I+ + P +Y R Sbjct: 69 IQTKTEMEALILENTLIKEHKPKYNISLKDDKTYPYVKISVQEDYPRVYMTRRLERDGAK 128 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGPF V AV + +++ F LR+C RPCL + + C PC +IS Y Sbjct: 129 YFGPFTDVTAVHVVLKLIRQYFPLRTCKSMKVE---RPCLQYHMHYCEAPCFHKISVPDY 185 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 +++ E G L ++I M A + +E A +RD+L ++ IQ + Sbjct: 186 RQYIDEIIALFEGKPIPLLKEIKEKMEIAAEELRFEDAARYRDQLTSIEKIQEKQRMVTQ 245 Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 +D + + LAC+Q F G+ G +F++ + +S + + + + Sbjct: 246 RGDLDVLGIAVDGQLACVQLLFIRGGRLLGRENYFVQNEGDSEETIMTDFIKQYYGDTTF 305 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQ 354 P+ +LL E+ E L + F G +V + VP++G K +I+ A NA Q Sbjct: 306 IPKELLLPMESSEQHLFKDWFSDMKGQQVDVLVPQRGYKMDMIKMAHENAETFLEERRRQ 365 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +K + LP +P+R+E +D SH G V MVV K +YR+ Sbjct: 366 WQYQIDKSGGAVKKLAEVLDLPRLPERMECFDISHTQGSETVASMVVFEGGKPAKKEYRR 425 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F L DD M ++ERR+ + PD++I+DGGKG Sbjct: 426 FKLKTTQG-KPDDFKSMAEIMERRY----------------GNETDWPMPDLIIIDGGKG 468 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 QL+A+ +++ + V + + +IS+AK + E F + ++++L+ P L +Q++R Sbjct: 469 QLNASIPLIRAVGVTD-VPVISLAKRIE-----EVFVEGQSDSIILSHHSPELQLLQQIR 522 Query: 535 DEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DEAHRFAIT HRK R K+ S LD I+GIGP R++ L F +++ + ++S + LA ++ Sbjct: 523 DEAHRFAITYHRKLRGKRNLESVLDHIDGIGPKRRKALWAHFNSLEAMKKASIDELAKVD 582 Query: 594 GISKKIACKIYNHFH 608 ++ K A +YN F Sbjct: 583 SMNYKTAEILYNFFR 597 >gi|253575343|ref|ZP_04852681.1| excinuclease ABC, C subunit [Paenibacillus sp. oral taxon 786 str. D14] gi|251845340|gb|EES73350.1| excinuclease ABC, C subunit [Paenibacillus sp. oral taxon 786 str. D14] Length = 626 Score = 501 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 189/619 (30%), Positives = 296/619 (47%), Gaps = 40/619 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M + G+++YVGKA L+ R++SY + H + ++S+I + + VT + Sbjct: 32 LPDSPGCYLMKNKDGKIIYVGKAKVLKNRVRSYFTGS-HNGKTQLLVSEIRDFEYIVTAS 90 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK PR+NILL+DDK+FPYI IT+ P L R + YFGP+ Sbjct: 91 NMEALILECNLIKEHHPRYNILLKDDKTFPYIKITN-EPHPRLEVTRRVLKDKAKYFGPY 149 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + A ++T L R + LR C CL + I +C PC E+ E Y + Sbjct: 150 PNAYAAQQTKKLLDRMYPLRKCNVMP----KEVCLYYHIGQCLAPCVHEVEKETYEKMTQ 205 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E FLSGG+ +K+++ R M++A +E A RD++ + + Sbjct: 206 EIVSFLSGGHEEIKKELERKMHEAAEALQFERAKELRDQIINIDALMEKQKITVTDAKDR 265 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q + G+ ++ +SY + + + P+ Sbjct: 266 DVFGYAVDKGWMCVQILYMRQGKMIERHASVFPFYGDA-YGDFMSYVTQYYSDNPALPQE 324 Query: 303 ILLSEEAEETSLL---EISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQK 355 ILL E+ E+ + Q VK VP++G KR++ + A NA Sbjct: 325 ILLPEKPEDQEEAGALDAPTALQEWLGVKTLVPQRGLKRQMTKMAEENARVTLDEKFRLI 384 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 E ++ K L + RIE +DNS+I G + V MVV + K +YRK+ Sbjct: 385 ERDEERTSKAAENLGKAIGLESVS-RIEAFDNSNIQGSNPVSAMVVFIDGKPAKKEYRKY 443 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 + VK DD MR V+ RR+ +++K PD++++DGGKGQ Sbjct: 444 KVKT--VKGPDDYETMREVIRRRYERVLKEN--------------LPRPDLIVVDGGKGQ 487 Query: 476 LSAAQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 +SAA VL+ +L + I + + K K F E + L Y +QR++ Sbjct: 488 ISAATDVLENELGLH--IPVCGLVKDAKHKTAQLMAF-DPPEPVYLPRDSQEFYLLQRIQ 544 Query: 535 DEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAI+ HR++R K+ S LD I GIG R++ LL+ FG++K I +S E + Sbjct: 545 DEVHRFAISFHREQRAKSMVASRLDSIPGIGEKRRKALLKHFGSLKKIKEASVEDFRPL- 603 Query: 594 GISKKIACKIYNHFHKNTS 612 I K+A +I N Sbjct: 604 SIGDKLARQILNALRDEDP 622 >gi|78224419|ref|YP_386166.1| excinuclease ABC subunit C [Geobacter metallireducens GS-15] gi|119367653|sp|Q39QN3|UVRC_GEOMG RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|78195674|gb|ABB33441.1| Excinuclease ABC subunit C [Geobacter metallireducens GS-15] Length = 614 Score = 501 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 194/626 (30%), Positives = 310/626 (49%), Gaps = 35/626 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVT 63 +PE PGVY M G +LYVGKA +L+KR++SY + + I +++++ + VT Sbjct: 9 TLPESPGVYLMKGSDGTILYVGKAKSLRKRVRSYFGAAGESRYHIRFLVARVAEVEVIVT 68 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EAL+LE +IK+ +PR+N+ LRDDK++ + + + P L R YFG Sbjct: 69 DTEKEALILENTLIKKHRPRYNLDLRDDKTYFSLRMDMNEEFPRLTIIRKVRQDGARYFG 128 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P++S + + + L R F LR R R RPCL +Q+++CS PC G IS E+Y Sbjct: 129 PYSSAASAREALKQLYRLFPLRHYPLETCRRRRRPCLFYQLRQCSAPCHGLISPEEYQGL 188 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NR 241 V A FL G N +L + M A E YE A +RD + A+ + Sbjct: 189 VQGAALFLDGKNRDLLKTYRERMASAAANERYEEAARYRDLIRAIEVTVEKQKMVTTGGD 248 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK-PCP 300 D ++ + + F G+ G+ ++ L + E + +S FL +Y+ + P Sbjct: 249 ADVLGIHREGSSLSLALLFIRGGRLIGSRSYLLAWELEDE--EAVSSFLNDYYSREVFIP 306 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +L+ +++ L ++ G + + P++G K +++ A NA + +K E Sbjct: 307 DEVLVPLPVADSAALAELLSERRGKRTSVAHPQRGTKAGLVKLAGKNAEAALREKQKREE 366 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 + +L + ++ L ++P+ IE YD S+I G VG V + K YR + + Sbjct: 367 GAEAVLTELKERLHLRNLPRCIECYDISNIQGTYPVGSRVSFRDGKADKGGYRHYRIKT- 425 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 V DD AMM VL RRF +E+ PD++++DGG GQL+ Sbjct: 426 -VAGADDFAMMHEVLSRRFRDSPAKDEH---------------PDLIVVDGGIGQLNILT 469 Query: 481 GVLKKLNVENRITIISIAK-GPKRSAGMEK--------FFVKKGEALVLNMRDPILYFIQ 531 VL++L VE+ + S+AK +R E+ F + ++L L + Sbjct: 470 AVLRELQVED-VDAASLAKSRVERDMAAEELTRSTERVFLPGRKNPVILRQNSAPLLLLA 528 Query: 532 RLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 R+RDEAHRFAIT H+K R K S LD I GIGP R++ LL+ FG+++ I +S + LA Sbjct: 529 RIRDEAHRFAITYHQKLRGKDTIRSILDTIPGIGPKRRKELLRQFGSLRRIREASRDELA 588 Query: 591 SIEGISKKIACKIYNHFHKN-TSHTP 615 + I +A I+ H+N TP Sbjct: 589 ATPTIPPTLAESIWKSLHENDEGDTP 614 >gi|116748697|ref|YP_845384.1| excinuclease ABC subunit C [Syntrophobacter fumaroxidans MPOB] gi|116697761|gb|ABK16949.1| excinuclease ABC, C subunit [Syntrophobacter fumaroxidans MPOB] Length = 677 Score = 501 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 191/624 (30%), Positives = 310/624 (49%), Gaps = 29/624 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRF 60 + P PGVY D +G VLYVGKA +L+KRI SY S + ++ + ++ + Sbjct: 71 KTASFPHLPGVYLFKDASGAVLYVGKAIDLRKRIASYFKSTGPIPVKTRALMGKAADMEY 130 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT E EALLLEA++IK+ +PR+N++LRDDK++P + I + P L R Sbjct: 131 VVTSNEKEALLLEASLIKKHRPRYNVVLRDDKNYPALRIDPREPFPRLEVVRRFQRDGAL 190 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGP+ S A+ +T+ L + F LR C R RPCL + + RC G C G +S E Y Sbjct: 191 YFGPYHSAYALRETLRLLHQLFPLRLCKGKRLLARERPCLNYSLGRCLGACAGRVSPEDY 250 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + V E FL G L++++ R M A ++E A +RDRL ++ + + + Sbjct: 251 HKMVDEVVLFLQGKTDVLQQQLRRRMADAAEALNFELAAYYRDRLQGIASMLEKQHIVSD 310 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D L+ + A + F G G F L+ + ++ + + D+ Sbjct: 311 RFLNQDVIGLHVGEEGAELAILFVRKGTLTGQRDFDLRDAQGEPMELLTAFIQQFYREDR 370 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P+ I++ E +LLE + G +V++ ++G++R+++E A NA +T + Sbjct: 371 YIPDEIVVPAPVEAEALLEEWLTELKGKRVRVWAARRGDRRELLEIAGKNARERYTSRRK 430 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + +L++ + LP P R+ D S+I G AVG +VV E K+ YR++ + Sbjct: 431 WQKRDVTMLQNLQRILKLPRAPLRMACVDISNIQGRHAVGAVVVFSEGSPDKDSYRRYRI 490 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 H DD AMM V+ER E+L D+++LDGGK QL+ Sbjct: 491 HGK--TEPDDPAMMAEVIERLLKNDAPLAESL---------------DLLVLDGGKSQLN 533 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAG-------MEKFFVKKGEALVLNMRDPILYFI 530 + ++++L + +ISIAK + G + + + L L+ IL+ + Sbjct: 534 RIRRLMEELGAAEGLPLISIAKEKETDRGEKGRGLYEKIYLPGRKNPLFLHHYPDILHLL 593 Query: 531 QRLRDEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 QRLRDEAHRFAI+ ++ R S LD + G+GP R RLL++ FG++K + +S E + Sbjct: 594 QRLRDEAHRFAISHYKSLHRNDLLASALDAVPGVGPKRSRLLIRHFGSMKALREASVEDI 653 Query: 590 ASIEGISKKIACKIYNHFHKNTSH 613 A + G+ +A I+N + Sbjct: 654 AQVPGVPPTVARTIFNILRSSGEE 677 >gi|120610347|ref|YP_970025.1| excinuclease ABC subunit C [Acidovorax citrulli AAC00-1] gi|120588811|gb|ABM32251.1| Excinuclease ABC subunit C [Acidovorax citrulli AAC00-1] Length = 670 Score = 501 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 212/663 (31%), Positives = 316/663 (47%), Gaps = 66/663 (9%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+ D G +LYVGKA NL+KR+ SY + RI HM+ +I + TV Sbjct: 15 SLPPLPGVYRYFDAQGGLLYVGKARNLKKRVSSYFTKTHGGTRIGHMVGKIARLETTVVR 74 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITD-----------KHKIPALYKHRD 113 +E EALLLE N+IK L PR+NIL RDDKS+PY+ IT + P + +R Sbjct: 75 SEAEALLLENNLIKSLNPRYNILFRDDKSYPYLKITGVAARDGTGEQPGQRFPRVAYYRG 134 Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 + + YFGP+ AV++TI LQ+ F LR+C D+VF +RTRPCLL+QIKRCSGPC Sbjct: 135 AVDKRHRYFGPYPGAWAVKETILLLQKVFRLRTCEDTVFANRTRPCLLYQIKRCSGPCVD 194 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 IS E Y V A L G L E + M + + ++E A R+++ ALS + + Sbjct: 195 LISPEAYALDVRNADAMLRGETRELLEALEARMMAHSERLEFEQAADIRNQITALSRVLH 254 Query: 234 HN---DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE----------- 279 +D ++ AC+ G++ G +F + Sbjct: 255 QQAIETVSDKDVDILAVKVLGGRACVNLAMVRGGRHLGDRPYFPVHVEDAAAVYQLEEWG 314 Query: 280 ----------------------------STNAQILSYFLRQFYTDKPCPENILLSEEAEE 311 S Q+L F+ Q Y P P ++ SE + Sbjct: 315 DGGDGPDGAAEAAGAAEAPPAAPRAPQRSLEVQVLEAFIAQHYIGVPVPPVLVTSEPVDR 374 Query: 312 TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTK 371 L + +Q G +V + ++R +E A NA + LS E S Q + + Sbjct: 375 ALLEAL--SQQAGIRVGAVHQPREQRRAWLEMAQKNADIQLARLLSEEGSQQARTRALAE 432 Query: 372 KFALPHIPKR---IEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDC 428 LP IE +D SH G + VV + ++YR++ + DD Sbjct: 433 ALDLPMDDLESLTIECFDISHTAGEATQASCVVFHHHRMQSSEYRRY--KIEGITGGDDY 490 Query: 429 AMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNV 488 A MR VL RR+S++ + + + PD+V++DGGKGQ+S A+ V +L + Sbjct: 491 AAMRQVLTRRYSKVAEAQREAGGAEPAPGQA--RLPDLVLIDGGKGQVSMAREVFTELGL 548 Query: 489 ENRITIISIAKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRK 547 E I+ + KG R G+E+ G + L L + ++RDEAHRFAIT R Sbjct: 549 ELS-RIVGVEKGEGRKVGLEELVFADGREKIYLGRDSAALMLVAQIRDEAHRFAITGMRA 607 Query: 548 RRKKAAYS--PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 R + L+EI G+GP ++ LLQ FG V+ ++ +S E LA+++GIS ++A +IY Sbjct: 608 ARARVRVGGGQLEEIPGVGPKKRARLLQRFGGVRGVAAASVEDLATVDGISLELAQEIYR 667 Query: 606 HFH 608 Sbjct: 668 ALR 670 >gi|153813326|ref|ZP_01965994.1| hypothetical protein RUMOBE_03743 [Ruminococcus obeum ATCC 29174] gi|149830616|gb|EDM85707.1| hypothetical protein RUMOBE_03743 [Ruminococcus obeum ATCC 29174] Length = 616 Score = 501 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 192/627 (30%), Positives = 314/627 (50%), Gaps = 36/627 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M D ++YVGKA +L+ R++ Y S+ N +I M++ I + Sbjct: 7 ELKKLPAKPGVYLMHDERDEIIYVGKAISLKNRVRQYFQSSRNKGAKIEQMVTHIARFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE+N+IK +P++N +L+DDKS+P+I +T + P + R + Sbjct: 67 IITDSELEALVLESNLIKEHRPKYNTMLKDDKSYPFIKVTVQEAYPRVLFARRMKKDKNR 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV+ I +++ + +RSC ++ R + RPCL + +K+C GPCTG Sbjct: 127 YFGPYTSGGAVKDVIELVRKLYQVRSCNRNLPRDCGKDRPCLYYHMKQCMGPCTGHADQR 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y E + + +FL+G +++ M +A+ + +E A RD + ++ I Sbjct: 187 AYKENIQKVIRFLNGDFQETIDQLTEKMQKASEEMRFEDAAEARDLIRSIQKIGERQKIT 246 Query: 239 -YNRMDCFSLYH--------NKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYF 289 Y D + + A +Q F G+ G F+L+ T +Q+LS F Sbjct: 247 AYGEEDRDIIACDMDESLDLREQDAVVQVFFMRDGKLIGRDHFYLRVARGDTRSQVLSSF 306 Query: 290 LRQFYTDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA 348 ++QFY P P I L E E+ ++E + KV+I VPK+G K K++E A NA Sbjct: 307 VKQFYAGTPFIPGEITLQTEIEDADVIEEWLTSRRKQKVRIVVPKKGTKEKLVELAWENA 366 Query: 349 HRS----HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGE 404 + E + + L R+E +D S+I G +VG MVV + Sbjct: 367 RMVLEKDRERIRREEGRTIGAVHEVEDWLGLK-GLNRMEAFDISNISGFESVGSMVVYEK 425 Query: 405 NGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWP 464 ++ YRKF + V+ +D A M VL RRF+ + SF P Sbjct: 426 GKPKRSDYRKFRIKS--VQGPNDYASMEEVLTRRFTH----------ESNGEFDSFSRMP 473 Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524 D++++DGG+GQ++ A GVL KL + RI + + K F + ++ Sbjct: 474 DLLLMDGGRGQVNIALGVLDKLGI--RIPVCGMVKDDHHRTRGLYF---DNIEIPIDTNS 528 Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583 I R++DEAHRFAI HR R K +S LD+I GIG R++ L++ + +++ I Sbjct: 529 EGFRLITRIQDEAHRFAIEYHRSLRSKEQVHSVLDDIPGIGERRRKALMRRYRSIEGIRD 588 Query: 584 SSPETLASIEGISKKIACKIYNHFHKN 610 ++ E LA E ++ A ++Y FH N Sbjct: 589 ATVEELAETESMNIGSAKQVYEFFHPN 615 >gi|221195798|ref|ZP_03568851.1| excinuclease ABC, C subunit [Atopobium rimae ATCC 49626] gi|221184272|gb|EEE16666.1| excinuclease ABC, C subunit [Atopobium rimae ATCC 49626] Length = 646 Score = 501 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 180/637 (28%), Positives = 311/637 (48%), Gaps = 49/637 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 +Q+P PG Y D +G+V+YVGKA NL+ R++ Y+ + +I M+ + + + Sbjct: 25 QVDQVPVSPGCYLWKDGSGKVIYVGKAKNLRSRMRQYVTLQDDRAKIPLMMQVVRSFDYI 84 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V E EAL+LE N+I + +P FN+ +DDKS+P+I IT+ PA+ R+ Y Sbjct: 85 VVENEHEALVLERNLIAQYRPYFNVDFKDDKSYPFIAITESDVFPAIKYTREKHKKGTRY 144 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCA---------------------DSVFRHRTRPCL 160 FGP+ A +TI++L++ + + + + +F + RPC Sbjct: 145 FGPYTDSYAARQTIDTLRKVVPICTASCTEWKRCRRELEKHPNEAAVANMIFAEKGRPCF 204 Query: 161 LFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAII 220 + + R G C G IS+ +Y + V + + FL G + ++ M +A D+E A Sbjct: 205 DYHVGRGPGVCVGAISTAEYGKHVRQVENFLRGNRSEIVMEVQEQMQEAAADLDFERAAR 264 Query: 221 HRDRLAALSHIQNHNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTD 277 + RL ALS + + + D Y + ++ G+ + F L Sbjct: 265 LKGRLDALSALDDRQQVTFPTSVNLDLIGFYREETISAACVFVVREGRTVRSVEFILDKG 324 Query: 278 SESTNAQILSYFLRQFYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGE 336 + + +++S F++++Y + P + + E + ++ + G++ + +P++GE Sbjct: 325 LDVSEDELVSGFVKRYYDETADVPAEVDVPLELSDAEVISEWLSDKRGHRCGLHLPQRGE 384 Query: 337 KRKIIEQALINAHRSHTQKL----STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMG 392 K +++E A NA + + + ++ L AL P RIE +D S + G Sbjct: 385 KFRLLEMASKNARHALMRHMIRTGYSDDRSNQALLQLESALALEAPPLRIECFDISTLHG 444 Query: 393 CSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFH 452 V MVV K+QYR+F +H + +D M VL RR+S Sbjct: 445 SFTVASMVVFTNGKPDKSQYRRFKIHAE-LDEANDFVSMSEVLGRRYS-----------P 492 Query: 453 PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV 512 + + F S PD++++DGGK QL+AA L +L ++ I + +AK + E F Sbjct: 493 ERMADKRFGSRPDLLVVDGGKPQLTAAIQQLAELGLD--IPVCGLAKSDE-----EVFVP 545 Query: 513 KKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLL 571 +VL LY I+++RDE+HRFAIT HR+ R KA S LDEI G+GP RK+ L Sbjct: 546 WDDTPIVLPSGSASLYLIKQVRDESHRFAITFHRELRDKAMTVSILDEIPGVGPKRKKDL 605 Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ FG+ K ++ +S + +A ++GIS +A I++ Sbjct: 606 MRHFGSFKKLNAASADDIADVKGISPALAQTIFDELK 642 >gi|187478944|ref|YP_786968.1| excinuclease ABC subunit C [Bordetella avium 197N] gi|115423530|emb|CAJ50066.1| excinuclease ABC, subunit C [Bordetella avium 197N] Length = 577 Score = 501 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 203/595 (34%), Positives = 310/595 (52%), Gaps = 29/595 (4%) Query: 24 YVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLKPR 83 YVGKA +L+KR+ SY + RI M+S++ + TVT +E EAL+LE N+IK L+PR Sbjct: 2 YVGKARDLKKRVSSYFQKTLASPRIAQMVSKVVRLEVTVTRSEAEALILENNLIKSLRPR 61 Query: 84 FNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFF 143 +NIL RDDKS+PY+LIT H+ P + +R S++ +G YFGP+ + AV +TI LQ+ F Sbjct: 62 YNILFRDDKSYPYLLIT-AHEWPRIAYYRGSTSKRGQYFGPYPNSWAVRETIQILQKVFR 120 Query: 144 LRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIA 203 LR+C D+VF +R+RPCLL+QI RCSGPC I +E Y V A +FL+G + ++I Sbjct: 121 LRTCEDTVFANRSRPCLLYQIGRCSGPCVQAIDAEDYRRDVQRAARFLNGEAREVMDEIE 180 Query: 204 RNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNRMDCFSLYHNKNLACIQTCF 260 M QA+ + +E A + RD++ +LS + + + D ++ C+ Sbjct: 181 ARMQQASGELRFEEAAVLRDQMGSLSKVLHQQTMENVGGEDTDVIAVASAGGKVCVNLAM 240 Query: 261 FHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFF 320 G++ G FF AQ+ F+ Q Y D P ++ S + L+ Sbjct: 241 VRGGRHLGDKPFFPSHADGEEAAQVQEAFIAQHYADNVLPPVLVCSHALPDVDLI-GLLS 299 Query: 321 KQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPK 380 +Q G + ++ QG +R +EQA NA + + L+ + + L Sbjct: 300 EQAGTRCRVLTRPQGVRRSWLEQAQKNAEMALARALTESGARAARTLSLAEALDLDTDEA 359 Query: 381 -----RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVL 435 RIE +D SH G + VV + + YR++N+ + DD A MR VL Sbjct: 360 ALDALRIECFDISHTAGEATQASCVVFLHHDMQPSLYRRYNIVG--ITPGDDYAAMRQVL 417 Query: 436 ERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITII 495 RRF+++ E P +V++DGGKGQ+ A+ V +L ++ ++ Sbjct: 418 TRRFAKVTDGE--------------APMPGLVLIDGGKGQVEVARQVFVELGLDIG-ALV 462 Query: 496 SIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY 554 +AKG R G+E L L L I ++RDEAHRFAIT R +R K Sbjct: 463 GVAKGEGRKVGLETLVFADARAPLALGKASAALMLIAQVRDEAHRFAITGMRAKRAKTRN 522 Query: 555 -SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 S L+EI G+G R++ LL FG + ++ +S E LAS++GIS +A +IY+ H Sbjct: 523 VSRLEEIEGVGAKRRQRLLARFGGLSGVTSASIEDLASVDGISMDLAERIYDALH 577 >gi|322377826|ref|ZP_08052315.1| excinuclease ABC subunit C [Streptococcus sp. M334] gi|321281249|gb|EFX58260.1| excinuclease ABC subunit C [Streptococcus sp. M334] Length = 615 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 168/622 (27%), Positives = 290/622 (46%), Gaps = 43/622 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIEITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G + + + + M A ++E A +RD + A+ ++ + Sbjct: 182 SMAQEVSDFLKGQDDQIIDDLKGKMAVAAQTMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 VPNEVLIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ ++ + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQRDG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQG-VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 Q++ A+ + +L ++ I I + K K E F E + L+ + +QR+ Sbjct: 458 QVNIAKQVIQDELGLD--IPIAGLQKNDKHQT-HELLFGDPLEVVELSRNSQEFFLLQRI 514 Query: 534 RDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 +DE HRFAIT HR+ R K ++S LD I G+GP RK+ L++ F ++ I +S + + + Sbjct: 515 QDEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV 574 Query: 593 EGISKKIACKIYNHFHKNTSHT 614 G+ + +A + + + Sbjct: 575 -GVPRAVAEAVQRKLNPQEAEA 595 >gi|23099571|ref|NP_693037.1| excinuclease ABC subunit C [Oceanobacillus iheyensis HTE831] gi|32130294|sp|Q8CXB4|UVRC_OCEIH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|22777801|dbj|BAC14072.1| excinuclease ABC subunit C (deoxyribodipyrimidine photolyase) [Oceanobacillus iheyensis HTE831] Length = 596 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 180/619 (29%), Positives = 299/619 (48%), Gaps = 44/619 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGK+ L+ R++SY N + ++ +I + + VT + Sbjct: 12 LPQQPGCYLMKDKNGTVIYVGKSKKLRNRVRSYFRGANDR-KTQRLVQEIRDFEYMVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E+EAL+LE N+IK+ PR+N++L+DDKS+PY+ IT + P L R +G YFGP+ Sbjct: 71 EIEALILEMNLIKKYDPRYNVMLKDDKSYPYLKIT-SERHPRLIVTRRLKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A +T L R + LR C + RPCL + + +C S ++Y E V Sbjct: 130 PNVIAARETKKLLDRMYPLRKCNNP----SGRPCLYYHMGQCKACAENPPSVKEYQEIVQ 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E FL GG ++++ +A M +A+ ++E A RD + + Sbjct: 186 EISSFLQGGFKDIRKNLAGEMQKASEALNFERAKEIRDTIQHIDATMEQQKMTLTDQMDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F ++K C+Q F G+ T + + + P+ Sbjct: 246 DIFGYSYDKGWMCVQVFFIRQGKLIERDTSVFPFFDSPEETIVSFIGRFYLHENHLKPKQ 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358 +L+ + L ++ + + +P +G K+++++ A+ NA Sbjct: 306 VLVPVGIDNELLAKVLEIQ-------VHIPLRGRKKELVQLAVKNAEISLNEKFQLIEKD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E ++D ++ + RIE +DNS+I G V M+V + K +YRK+ + Sbjct: 359 EERTIQAIEDLGEQLNIETP-HRIEAFDNSNIQGTDPVSAMIVFEDGKPNKKEYRKYKIR 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 VK DD MR V+ RR+S+++K PD++I+DGGKGQ+SA Sbjct: 418 D--VKGPDDYDTMREVVRRRYSRVLKEN--------------LPLPDLIIVDGGKGQMSA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A VL+ +L ++ I + +AK + E + + L + Y +QR++DE Sbjct: 462 ALEVLEDELGLD--IPLAGLAKDDRHKTS-ELLYGMPPIVVPLERQSQAFYLVQRIQDEV 518 Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R K+ + S LD+I G+G R++LLL F ++ I ++S E + + GI Sbjct: 519 HRFAITFHRQLRGKSLFQSELDKIPGVGEKRRKLLLSHFKSINQIKKASIEDMRKL-GIP 577 Query: 597 KKIACKIYNHFH-KNTSHT 614 IA + NH + N T Sbjct: 578 SNIAELVLNHLNSPNDDET 596 >gi|71280471|ref|YP_269952.1| excinuclease ABC subunit C [Colwellia psychrerythraea 34H] gi|90111063|sp|Q47Z18|UVRC_COLP3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|71146211|gb|AAZ26684.1| excinuclease ABC, C subunit [Colwellia psychrerythraea 34H] Length = 639 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 215/615 (34%), Positives = 331/615 (53%), Gaps = 22/615 (3%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 E GVY+M D V+YVGKA L+KR+ SY + + + ++ QI I TVT TE Sbjct: 31 EQAGVYRMYDSKQVVIYVGKAKQLKKRLASYFRKDVGSVKTQVLVKQIAAIEVTVTHTEG 90 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EAL+LE N IK+ +P++NILLRDDKS+PY+LIT HK P L HR ++G YFGPF + Sbjct: 91 EALILENNYIKKYQPKYNILLRDDKSYPYLLIT-AHKHPKLGLHRGGKKVKGEYFGPFPT 149 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 V AV +++ +Q+ F +R C DS +R R+RPCL Q+ RCS PC +IS + Y E V+ A Sbjct: 150 VGAVWESLRLMQKIFPIRQCEDSYYRARSRPCLQHQLGRCSAPCVDKISVDDYKEQVNLA 209 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCF 245 K FL G + + E++ M A+ + +E A +RD++ L +Q + +D Sbjct: 210 KLFLQGKSSAVIEQLVARMELASNELHFELAAKYRDQIVTLRKVQQQQHVSGHVAELDVV 269 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP------- 298 LY +K CI F + G+ ++F SES++++IL F+ Q Y Sbjct: 270 GLYRDKTQVCIHLLFIRQHKILGSKSYFPTVPSESSDSEILQAFIAQHYLSNEMLSHGKV 329 Query: 299 ---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P+ I++ E E+ L +Q Y VKI+ + E+ + ++ A NAH + + Sbjct: 330 QSSIPKEIVIKESIEQVVELARLLSEQAEYDVKISTNTRSERAQYLKLAGTNAHTALVTR 389 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 S + S Q + F L + +RIE +D SH MG V VV + G +K YR++ Sbjct: 390 NSHKESMQARFVALNEVFELENGIQRIECFDISHTMGQQTVASNVVFNQEGPLKTDYRRY 449 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M L +R+ +L N ++ + PD+V +DGGKGQ Sbjct: 450 NVFG--ITPGDDYAAMAFALNKRYGKLKAN-----PIKPEEHGALEKLPDIVFIDGGKGQ 502 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLR 534 L+ A+ +L + ++ +AKG R G+E + + + L P L+ +Q +R Sbjct: 503 LAKAEEFFSQLALTRTPLLVGVAKGESRKPGLETLILAGSHQLISLPATSPALHLVQHIR 562 Query: 535 DEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE+HRFAIT HR +R+K + S L+ I GIG +++ LL G ++ + ++ LA + Sbjct: 563 DESHRFAITGHRAKRQKVSKKSRLESIEGIGAKKRQSLLTFLGGLQEVMQADITALAKVP 622 Query: 594 GISKKIACKIYNHFH 608 GIS +A KI+N H Sbjct: 623 GISHVLAEKIHNALH 637 >gi|300088039|ref|YP_003758561.1| excinuclease ABC subunit C [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527772|gb|ADJ26240.1| excinuclease ABC, C subunit [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 605 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 202/617 (32%), Positives = 325/617 (52%), Gaps = 31/617 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M + +G+++YVGKA NL+ R++SY +N + ++ + ++ F Sbjct: 9 QVQRLPADPGVYLMKNASGQIIYVGKAVNLKNRVRSYFRANARLDDKTRLLVDEARDLEF 68 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT TE EAL+LE N+IKR +P +NI+L+DDKS+PY+ IT P L R + G Sbjct: 69 LVTATEQEALILELNLIKRHRPHYNIMLKDDKSYPYLHITAGE-WPRLEVTRRYTEGDGR 127 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGPF +V + + L+R F RSCA + +H RPCL + +KRC PC+G+I+ E Y Sbjct: 128 YFGPFTDTRSVRQVLELLRRIFPFRSCARN-LKHVKRPCLEYDMKRCPAPCSGKIAPEDY 186 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + + + +FL G ++ ++ R + A + ++E A + RDR+ + + + Sbjct: 187 QKSIEQITRFLEGKQDSVVRQLRREIESAAARLEFEQAAMLRDRVRDIEQVISAQRIAVK 246 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 +D + N N + + F G+ G F LK + +L F+ Q+Y+ Sbjct: 247 ARGELDAVAQIRNDNESFVMVFFIRGGKLVGREHFILKGTAGENPGAVLGSFVSQYYSAA 306 Query: 298 P-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P +LL ++ +LE ++ +V+I VP++G + +++ NA R Q Sbjct: 307 THIPPLVLLESPPDDQQMLEAWLTERRDGRVRINVPRRGARLELMNMVRDNARRGLEQYR 366 Query: 357 STE-----ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 + H+ L++ K L P RIE YD S+I G AVG MVV + Sbjct: 367 LKKLLTGAEDHRSALEELAKVLKLKSPPGRIEGYDISNIQGTLAVGSMVVFHQGRPDSKH 426 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YR+F + V DD AMM+ V++RRF + + + PD+V++DG Sbjct: 427 YRRFRIRT--VAGADDFAMMKEVIDRRFRR----------PTDQAGDDWAKLPDLVLIDG 474 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GKGQLSAA L++ E I +I +AK + E F +VL+ R P +Q Sbjct: 475 GKGQLSAAMAALRERQYE-HIPVIGLAKERE-----EIFIPGLSRPIVLDERSPARRLLQ 528 Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 R+RDEAHRFA+ H R+K+A S LD + GIGP ++R L++ FG+V + +S E LA Sbjct: 529 RIRDEAHRFALGYHGALRRKSATGSLLDAVPGIGPAKRRALIRQFGSVAGVRTASAEELA 588 Query: 591 SIEGISKKIACKIYNHF 607 +++GI+ ++A + Sbjct: 589 TVKGITPRLARLVKESL 605 >gi|220928256|ref|YP_002505165.1| excinuclease ABC subunit C [Clostridium cellulolyticum H10] gi|254764928|sp|B8I8F2|UVRC_CLOCE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|219998584|gb|ACL75185.1| excinuclease ABC, C subunit [Clostridium cellulolyticum H10] Length = 613 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 188/619 (30%), Positives = 313/619 (50%), Gaps = 24/619 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 +++P+ GVY M D G V+YVGKA L+ R++ Y S NH ++ M+S+++ + Sbjct: 7 ELKKLPDKSGVYIMKDANGVVIYVGKAVVLKNRVRQYFQQSANHPPKVQAMVSKVSEFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V +EVEAL+LE +IK+ KP++NILL+DDK +PYI +T + P + K R Sbjct: 67 IVVDSEVEALMLECTLIKKYKPKYNILLKDDKHYPYIKVTLNEEYPRILKTRRVEKDGAR 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP++S AV TI++L++ F L++C ++ R +TRPCL + +K+C PC G ++ + Sbjct: 127 YFGPYSSGFAVNDTIDTLKKLFSLKTCNKNLPRDIGKTRPCLNYHMKQCLAPCQGGVNRD 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y E + + +FL G + + M A + D+E A R+++ ++ + + Sbjct: 187 EYREMMKKICRFLGGQYDEIINDLRIQMETAAEQLDFEKAAQLRNKITSIKQLSESQKVL 246 Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D + CIQ F G+ G F + ++ LS F++QFYT Sbjct: 247 FTDLEDRDIIGYSADSTDLCIQVFFVRNGRVIGREHFIFEGEANEDKGYSLSTFIKQFYT 306 Query: 296 D-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 + P I+L E +++ + ++ G+KV + VP++G+ K++ NA + Sbjct: 307 KVQYVPSEIVLQSEVDDSETIAKWLTEKRGFKVALRVPQRGDLVKLVHMVSENAEITLKL 366 Query: 355 KLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + H + K L P RIE YD S+ V MVV + Sbjct: 367 HRERQSREGTVHSEGMAQLVKLLGLEEAPARIESYDISNTGSSEIVASMVVFENGRPARQ 426 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 +YRKF + ++ Q+D M+ L RR ++ + +E + F PD++++D Sbjct: 427 EYRKFKMKS--IEQQNDYGSMQETLFRRLNRAKREKEE-----GTENAKFSKLPDLILVD 479 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GG ++AA+ V+++L I +AK + V G L P+L FI Sbjct: 480 GGSNHVNAARQVVEELGY--NFKIAGMAKDDRHRTKS---LVYMGNEYELATNMPLLRFI 534 Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 ++DE HR A+ +RK R K+ S LDEI GIG RK+ L++ F +V I ++ L Sbjct: 535 TEIQDETHRVAVEYNRKLREKRYVRSELDEIEGIGQTRKKALIKHFKSVAAIRKADIAQL 594 Query: 590 ASIEGISKKIACKIYNHFH 608 + GIS+KIA IY +F+ Sbjct: 595 QEVNGISEKIAKNIYEYFN 613 >gi|220905823|ref|YP_002481134.1| excinuclease ABC subunit C [Cyanothece sp. PCC 7425] gi|254764930|sp|B8HSX6|UVRC_CYAP4 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|219862434|gb|ACL42773.1| excinuclease ABC, C subunit [Cyanothece sp. PCC 7425] Length = 624 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 200/620 (32%), Positives = 305/620 (49%), Gaps = 28/620 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFT 61 +++P PGVY M D ++LY+GK+ L+ R++SY N R+ M+ Q+ I F Sbjct: 20 LKEIPAEPGVYFMRDSQDQILYIGKSKKLRSRVRSYFRKFNELGPRLELMVRQVAEIEFI 79 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQG 119 VT TE EAL LEAN+IK+ +P FN+LL+DDK +PY+ IT P ++ R Sbjct: 80 VTDTEAEALALEANLIKQHQPHFNVLLKDDKKYPYLCITWSEAYPRIFITRKRRAEAKDD 139 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 Y+GP+ + +T+ ++R F LR +F + RPCL F I RC G C I+SE Sbjct: 140 RYYGPYTDTHLLRQTLGLVKRIFPLRQRPKPLF--KDRPCLNFDIGRCPGVCQQLIASED 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + +H+ G L + + M A ++E A RD++ L + Sbjct: 198 YRKTIHKVAMIFQGRTSELIDTLTPQMEAAAENLNFEQAARIRDQINGLKTLGEEQKVSL 257 Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D +L ++ ACIQ G+ G F S IL L + Y Sbjct: 258 PDDTVSRDAIALAADEQHACIQLFQIRAGRLVGRLGFVADAQSG-PPGAILQRVLEEHYA 316 Query: 296 DKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 P IL+ E E +L + G KV + VP++ K ++IE NA Sbjct: 317 GADPVEIPAEILVQTELPEAEMLATYLTEYKGRKVTLLVPQRQSKAELIEMVERNAQYEL 376 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + KD + LP +P+RIE YD SH+ G AV VV + K Y Sbjct: 377 ARTQRFSDRNAEAQKDLAELLDLPELPQRIEGYDISHVQGSDAVASRVVFIDGLPAKQHY 436 Query: 413 RKFNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 R + + +V D A + V++RRF + I+ HP+ S P WPD++++D Sbjct: 437 RHYKIKNPNVTAGHSDDFASLAEVVQRRFRKFIE-------HPETDRLSDPDWPDLIMID 489 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQLSA L + + I+S+AK + E F + L + P + + Sbjct: 490 GGKGQLSAVVNALSGTGLLEDLQIVSLAKQRE-----EIFLPGESLPLNTDPDQPGVQLL 544 Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 +RLRDEAHRFA++ HR++R ++ S LDEI G+G R++ LL +F ++ I +SPE L Sbjct: 545 RRLRDEAHRFAVSFHRQQRTERMRRSRLDEIPGLGYERQKQLLAAFRSIDYIREASPEQL 604 Query: 590 ASIEGISKKIACKIYNHFHK 609 A++ I ++A +IY++FH Sbjct: 605 ATVPLIGPRLAQQIYDYFHP 624 >gi|229505193|ref|ZP_04394703.1| excinuclease ABC subunit C [Vibrio cholerae BX 330286] gi|229511137|ref|ZP_04400616.1| excinuclease ABC subunit C [Vibrio cholerae B33] gi|229518256|ref|ZP_04407700.1| excinuclease ABC subunit C [Vibrio cholerae RC9] gi|229608212|ref|YP_002878860.1| excinuclease ABC subunit C [Vibrio cholerae MJ-1236] gi|255745618|ref|ZP_05419566.1| excinuclease ABC subunit C [Vibrio cholera CIRS 101] gi|262159107|ref|ZP_06030219.1| excinuclease ABC subunit C [Vibrio cholerae INDRE 91/1] gi|262169465|ref|ZP_06037157.1| excinuclease ABC subunit C [Vibrio cholerae RC27] gi|229344971|gb|EEO09945.1| excinuclease ABC subunit C [Vibrio cholerae RC9] gi|229351102|gb|EEO16043.1| excinuclease ABC subunit C [Vibrio cholerae B33] gi|229357416|gb|EEO22333.1| excinuclease ABC subunit C [Vibrio cholerae BX 330286] gi|229370867|gb|ACQ61290.1| excinuclease ABC subunit C [Vibrio cholerae MJ-1236] gi|255736693|gb|EET92090.1| excinuclease ABC subunit C [Vibrio cholera CIRS 101] gi|262022278|gb|EEY40987.1| excinuclease ABC subunit C [Vibrio cholerae RC27] gi|262029292|gb|EEY47944.1| excinuclease ABC subunit C [Vibrio cholerae INDRE 91/1] gi|327483911|gb|AEA78318.1| Excinuclease ABC subunit C [Vibrio cholerae LMA3894-4] Length = 588 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 205/607 (33%), Positives = 320/607 (52%), Gaps = 31/607 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M + V+YVGKA +L+KR+ SY N + + ++S I I TVT TE EAL+LE Sbjct: 1 MYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTVTHTETEALILEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK+ P++N+LLRDDKS+PYI ++ HK P L HR + +G YFGP+ AV +T Sbjct: 61 NYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKKRRGEYFGPYPDSGAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193 ++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC IS + Y E VH + FL G Sbjct: 120 LHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQEIVHYLRLFLQG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHN 250 ++ + + M QA+ + +E A RD++ A+ +Q + +D Sbjct: 180 KDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDSLEDLDVLGFAQE 239 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLS 306 +ACI G+ G+ + F K S+++ ++ FL Q+Y + P I+L+ Sbjct: 240 NGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHSEARSIPARIILN 299 Query: 307 EEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365 EET L+I+ + G KV V G + + ++ A NA + T K++ +++ Sbjct: 300 RGLTEETEALQIAISELAGRKVTFHVNPTGTRGRYLKLANTNALTAITTKMNHKMTISQR 359 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 K ++ + I R+E +D SH MG S + VV + G +K +YR++N+ + Sbjct: 360 FKALQEELGMDAIT-RMECFDISHTMGESTMASCVVFNQEGPLKQEYRRYNI--TGITGG 416 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD A M VLERR+S+ + PD++ +DGGKGQL+ A ++ Sbjct: 417 DDYAAMAQVLERRYSKQLD---------------SSKIPDIIFIDGGKGQLNRAYEIISS 461 Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 + II IAKG R G+E G+ L P L+ IQ +RDE+H AI Sbjct: 462 CWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQHIRDESHNHAIA 521 Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR +R K S L+ I G+GP R++ LL+ G ++ + R+S E +A + GIS +A Sbjct: 522 GHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPGISHALAEN 581 Query: 603 IYNHFHK 609 IY + Sbjct: 582 IYQALKQ 588 >gi|315174486|gb|EFU18503.1| excinuclease ABC subunit C [Enterococcus faecalis TX1346] Length = 598 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 184/616 (29%), Positives = 311/616 (50%), Gaps = 41/616 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY ++ T + ++S+I++ + VT + Sbjct: 12 LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFRGSHDT-KTERLVSEIDDFEYIVTES 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EALLLE N+I + P++NI+L+DDK++P+I IT+ K P L R + YFGP+ Sbjct: 71 NIEALLLEINLIHKNNPKYNIMLKDDKTYPFIKITN-EKYPRLMITRKVLKDKALYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 V+A +T L R F LR C + PCL + + +C P ++ + Y + V Sbjct: 130 PDVNAANETKKLLDRLFPLRKCN----PSQKTPCLYYHLGQCLCPYAFDVDPQVYKDMVE 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNRM 242 E K FLSGG+ +++++ M A ++E A RD++ A+ + + Sbjct: 186 EIKGFLSGGHTEIQDRLQEKMAYAAAHMEFEKAAEFRDQIKAIETVMTRQKMTNVDLIDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +++ A + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRQGKLIERDVSIFPFYDDASEAFLTFIGQFYQENEHFVPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 +L+ ++ ++ S+ + K + P++GEK+K+++ A NA + + Sbjct: 306 VLIPDDIDKESVEALLATK-------VLQPQRGEKKKLVKLASKNAAVALNEKFDLIVRK 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + ++ +P RIE +DNS+IMG + V MVV + KN+YRK+ + Sbjct: 359 QERTIGAVEKLGNAMNIPAP-IRIEAFDNSNIMGTNPVSAMVVFIDGRPAKNEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD A MR V+ RR+S+++K +PD++++DGGKGQ+ Sbjct: 418 T--VQGPDDYASMREVIYRRYSRVLKEG--------------LPFPDLILIDGGKGQVDV 461 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ VL + I + +AK K E F E + L + +QR++DE H Sbjct: 462 AKDVLAN-QLGVDIPVAGLAKNDKHKTS-ELLFGPNLEVVPLERNLQEFFLLQRIQDEVH 519 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ R K ++ S LD I G+GP RK+ LL+ F ++K I+ +S E L G+ + Sbjct: 520 RFAITFHRQLRSKNSFASKLDNIEGLGPKRKKNLLKEFKSLKNITAASVEELRKA-GLPE 578 Query: 598 KIACKIYNHFHKNTSH 613 +A +Y H H+ T+ Sbjct: 579 TVAKNVYRHLHQETTS 594 >gi|332359626|gb|EGJ37443.1| excinuclease ABC subunit C [Streptococcus sanguinis SK355] Length = 611 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 170/622 (27%), Positives = 294/622 (47%), Gaps = 41/622 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNDTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + + C + + +C ++ S+ + Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNPP----EKVCFYYHLGQCKAHTICQVDSQYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E E FL G + + E + M A ++E A +RD + ++ ++ + Sbjct: 182 ELAQEVAAFLKGQDDQIIEDLRGKMAGAAQAMEFEKAAEYRDLIQSIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P IL+ + +E ++ + K + P++GEK++++ A+ NA + Sbjct: 302 KPNEILIPPDIDEEAVRAMVDTKVFK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LERSIEKTHGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V++RR+S++I++ + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F + + L+ + +QR++ Sbjct: 458 QVNVAKEVIQE-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K+++S LD I G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKSSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSHTP 615 G+ + +A + + T Sbjct: 575 GVPRAVAEAVQRKLNPKTQEQE 596 >gi|168185645|ref|ZP_02620280.1| excinuclease ABC, C subunit [Clostridium botulinum C str. Eklund] gi|169296408|gb|EDS78541.1| excinuclease ABC, C subunit [Clostridium botulinum C str. Eklund] Length = 621 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 194/621 (31%), Positives = 325/621 (52%), Gaps = 19/621 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 + +PE PGVY M + G V+YVGKA L+ R++ Y S +H ++ M+ I + Sbjct: 7 QLKIIPEKPGVYLMKNSLGEVIYVGKAKVLKNRVRQYFQNSKSHGSKVRAMVKNIAEFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE N+IK+ +PR+NILL+DDK +P++ IT P ++ R + Sbjct: 67 IITDSEMEALILECNLIKKYRPRYNILLKDDKHYPFLKITTNEDFPRIFVTRVRAKDGAR 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ AV TI +++ F LR+C ++ + +PCL + IK C PC G IS E Sbjct: 127 YFGPYPETSAVYDTIELIKKIFPLRTCRLNIKENSEPIKPCLNYHIKLCMAPCAGYISRE 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 +Y + + + L+G ++++ + M +A+ + ++E A RD++ A+ I+ Sbjct: 187 EYRKIIKKIIDLLNGKDNDVINDLKSKMEKASEELNFEEAATLRDKILAVEKIRERQKII 246 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D ++Y + C Q F G+ G F L NA I+S F+++FY Sbjct: 247 SSNFENEDFINIYSEEVDLCAQIFFIRDGKIMGREHFILDRSIFGNNADIISDFIKEFYG 306 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351 + + E + LLE + G KV I +P++GEK+K+++ NA + Sbjct: 307 GTAFIPKNIYAPEVMDIELLENWLSSKKGSKVSIKIPQKGEKKKLLDLVESNAKNTLEQF 366 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 + + + LK+ L IP RIE YD S+I G +VG M+V + + Sbjct: 367 KLKLKVDKELYSNTLKELQNVLGLEEIPNRIEAYDISNIQGVDSVGSMIVFDKGKPKNSD 426 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILD 470 YR+F + VK +D MR +L RRF+ + +E F +PD++++D Sbjct: 427 YRRFKIKT--VKGANDYDSMREILTRRFTHGLGEIKEIQKRDLLLSGAKFSIFPDLILMD 484 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ++ A VL+KLN+ I + + K K V + + + + I+ FI Sbjct: 485 GGKGQVNIALEVLEKLNI--NIPVCGMVKDDKHKTRG---LVYNNKEINIKSNNKIMQFI 539 Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DE HRFAIT HR R ++ +S L++I +G R++ LLQ FG+++ I ++S E L Sbjct: 540 TRVQDEVHRFAITYHRSLRNRRVLHSVLEDIPNVGQKRRKELLQKFGSIENIKKASYEEL 599 Query: 590 ASIEGISKKIACKIYNHFHKN 610 + I++K A I ++F+ + Sbjct: 600 LDTDSINEKAAKSIIDYFNND 620 >gi|307703209|ref|ZP_07640155.1| excinuclease ABC, C subunit [Streptococcus oralis ATCC 35037] gi|307623284|gb|EFO02275.1| excinuclease ABC, C subunit [Streptococcus oralis ATCC 35037] Length = 615 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 168/618 (27%), Positives = 288/618 (46%), Gaps = 41/618 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G + + + + M A ++E A +RD + A+ ++ + Sbjct: 182 SMAQEVSDFLKGQDDKIIDDLKGKMAVAAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 VPNEVLIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ + + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L+ + +QR++ Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLAKIKEASVDEIVEV- 574 Query: 594 GISKKIACKIYNHFHKNT 611 G+ + +A + + Sbjct: 575 GVPRAVAEAVQRKLNPQE 592 >gi|194398570|ref|YP_002037276.1| excinuclease ABC subunit C [Streptococcus pneumoniae G54] gi|226698795|sp|B5E2L2|UVRC_STRP4 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|194358237|gb|ACF56685.1| excinuclease ABC, C subunit [Streptococcus pneumoniae G54] Length = 615 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 168/620 (27%), Positives = 292/620 (47%), Gaps = 41/620 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G ++ + +++ M A ++E A +RD + A+ ++ + Sbjct: 182 SMAQEVSDFLKGQDNKIIDELKGKMAAAAQTMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 VPNEVLIPQDIDEEAVKALVDSKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ + + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L+ + +QR++ Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I+G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMRHFKSLTKIKEASVDEIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSH 613 G+ + +A + + + Sbjct: 575 GVPRAVAEAVQTKLNPQETE 594 >gi|229515596|ref|ZP_04405055.1| excinuclease ABC subunit C [Vibrio cholerae TMA 21] gi|229347365|gb|EEO12325.1| excinuclease ABC subunit C [Vibrio cholerae TMA 21] Length = 588 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 204/607 (33%), Positives = 319/607 (52%), Gaps = 31/607 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M + V+YVGKA +L+KR+ SY N + + ++S I I TVT TE EAL+LE Sbjct: 1 MYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTVTHTETEALILEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK+ P++N+LLRDDKS+PYI ++ HK P L HR + +G YFGP+ AV +T Sbjct: 61 NYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKKRRGEYFGPYPDSGAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193 ++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC IS + Y E VH + FL G Sbjct: 120 LHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQEIVHHLRLFLQG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHN 250 ++ + + M QA+ + +E A RD++ A+ +Q + +D Sbjct: 180 KDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDSLEDLDVLGFAQE 239 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLS 306 +ACI G+ G+ + F K S+++ ++ FL Q+Y + P I+L+ Sbjct: 240 NGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHSEARSIPARIILN 299 Query: 307 EEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365 EET L+ + + G KV V G + + ++ A NA + T K++ +++ Sbjct: 300 RGLTEETEALQTAISELAGRKVTFHVNPTGTRGRYLKLANTNALTAITTKINHKMTINQR 359 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 K ++ + I R+E +D SH MG S + VV + G +K +YR++N+ + Sbjct: 360 FKALQEELGMDAIT-RMECFDISHTMGESTMASCVVFNQEGPLKQEYRRYNI--TGITGG 416 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD A M VLERR+S+ + PD++ +DGGKGQL+ A ++ Sbjct: 417 DDYAAMAQVLERRYSKQLD---------------SSKIPDIIFIDGGKGQLNRAYEIISS 461 Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 + II IAKG R G+E G+ L P L+ IQ +RDE+H AI Sbjct: 462 CWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQHIRDESHNHAIA 521 Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR +R K S L+ I G+GP R++ LL+ G ++ + R+S E +A + GIS +A Sbjct: 522 GHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPGISHALAEN 581 Query: 603 IYNHFHK 609 IY + Sbjct: 582 IYQALKQ 588 >gi|307706144|ref|ZP_07642963.1| excinuclease ABC, C subunit [Streptococcus mitis SK321] gi|307618544|gb|EFN97692.1| excinuclease ABC, C subunit [Streptococcus mitis SK321] Length = 615 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 169/619 (27%), Positives = 289/619 (46%), Gaps = 43/619 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G + + +++ NM A ++E A +RD + A+ ++ + Sbjct: 182 SMAQEVSDFLKGQDDKIIDELKGNMTAAAQTMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 VPNEVLIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGSLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ + + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQG-VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 Q++ A+ + +L ++ I I + K K E F E + L+ + +QR+ Sbjct: 458 QVNIAKQVIQDELGLD--IPIAGLQKNDKHQT-HELLFGDPLEVVELSRNSQEFFLLQRI 514 Query: 534 RDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 +DE HRFAIT HR+ R K ++S LD I G+GP RK+ L++ F ++ I +S + + + Sbjct: 515 QDEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASLDEIVEV 574 Query: 593 EGISKKIACKIYNHFHKNT 611 G+ + +A + + Sbjct: 575 -GVPRAVAEDVKRKLNSQE 592 >gi|84489382|ref|YP_447614.1| excinuclease ABC subunit C [Methanosphaera stadtmanae DSM 3091] gi|119367671|sp|Q2NGT2|UVRC_METST RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|84372701|gb|ABC56971.1| UvrC [Methanosphaera stadtmanae DSM 3091] Length = 598 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 195/617 (31%), Positives = 313/617 (50%), Gaps = 30/617 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH--THRITHMISQINNIRF 60 +++P+ PGVY M + V+YVGKA L+ R++SY + + ++ + + Sbjct: 6 PDEVPQKPGVYIMHNKEDEVIYVGKAKKLKSRLQSYFRDEDKLDRPKTQFLMRHFSYFEY 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T TE EAL+LEAN+IK+ +P +NI L+D K +PYI IT+ P +Y R+ + S Sbjct: 66 ILTNTEKEALILEANLIKKYRPHYNISLKDGKQYPYIKITN-EDFPRIYITRNIVNDKAS 124 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 Y+GP+ I+ L + F +R+ +H PCL +QIK+CS PC IS E+Y Sbjct: 125 YYGPYTDSTHARAFIDFLNKNFQIRT-----CKHMDGPCLNYQIKQCSAPCVNYISQEEY 179 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + K L G +K+ ++MN+ ++E A + RD++ + + N Sbjct: 180 NRNIRRVKLLLQGKYKTTIKKLKKDMNRYAKNMEFEKAAMLRDQIDTIKITLEKQNIQPN 239 Query: 241 R---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 + D HN A + G+ LK ++ QI + F++Q+Y+ Sbjct: 240 QDVNQDIIGFDHNNEEAAVVILSVRSGKTNKKDDLVLKGIKGFSDKQIRTEFIKQYYSTA 299 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P P+ I+L ++ E+ ++ ++ +K+KITV G +I+ A NAH S T+ Sbjct: 300 PLPDEIILEDDIEDKDVIVEWLEEKANHKIKITVATDGHYITLIKIAKKNAHISLTENTK 359 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 E + L K LP +P IE +D S+I G AV MVV K YRKF + Sbjct: 360 EEENP---LLTLEKYLNLPRLPYHIEAFDISNISGIYAVASMVVFENGKPAKKMYRKFKM 416 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + +D AMM+ V+ RR+S + N N S PD+V++DGGKGQL Sbjct: 417 NT---PGPNDFAMMKEVITRRYSHISPNNTN------NTSDSLSIHPDLVLIDGGKGQLG 467 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A V KKLN+ + + + +AK + E + + ++L + L+ +Q +RDE+ Sbjct: 468 MAVDVFKKLNITD-VPLAGLAKKFE-----EVYLPGQTNPIILPRQSSALHLLQYVRDES 521 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HRK R KA S LD+I G+G RK+ LL F ++ I +S + + ++GI+ Sbjct: 522 HRFAITFHRKLRSKAFTKSILDDIPGVGKKRKQALLTHFESLDNIYNASFDEICQVKGIN 581 Query: 597 KKIACKIYNHFHKNTSH 613 +K+A IY ++ Sbjct: 582 QKLAKTIYETLKEDKKE 598 >gi|25028267|ref|NP_738321.1| excinuclease ABC subunit C [Corynebacterium efficiens YS-314] gi|259507326|ref|ZP_05750226.1| excinuclease ABC, subunit C [Corynebacterium efficiens YS-314] gi|81750450|sp|Q8FT60|UVRC_COREF RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|23493551|dbj|BAC18521.1| putative excinuclease ABC subunit C [Corynebacterium efficiens YS-314] gi|259165130|gb|EEW49684.1| excinuclease ABC, subunit C [Corynebacterium efficiens YS-314] Length = 681 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 184/673 (27%), Positives = 301/673 (44%), Gaps = 74/673 (10%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D A RV+YVGKA NL+ R+ +Y R M+ +++ +TV Sbjct: 13 TIPTEPGVYKFRDDARRVIYVGKAKNLRARLSNYFQDVTQLHPRTRQMVFAASSVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +EVEAL LE IKR PRFN+ RDDKS+P + ++ + P + +R Y+G Sbjct: 73 GSEVEALQLEYTWIKRFDPRFNVKYRDDKSYPMLAVSTGERFPRAFFYRGPRRKGVRYYG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ AV +T++ L R F +R+C+ VF RPCLL I +C+ PC G +S E++ Sbjct: 133 PYSHAWAVRETLDLLIRVFPMRTCSKGVFNRHENLGRPCLLGYIDKCAAPCVGRVSEEEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E V F+SG + ++ M A+ + D+E A RD L A++ + + Sbjct: 193 REIVEGFCSFMSGHTDKVTRELTAEMMAASEELDFERAARLRDDLGAINKVMEKQAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQI------------ 285 D + ++ A +Q G+ RG + ++ + Sbjct: 253 DGTDADIIAFATDELEAAVQIFHVRGGRIRGQRGWVVEKTGDWDLPDDSDAEGPDPALPH 312 Query: 286 -LSYFLRQFYTDKP-----------------------------CPENILLSEEAEETSLL 315 + +FL QFY D P IL+ E E Sbjct: 313 LMQHFLVQFYGDAVERAESEAAEDAEHIERRGVDQYREATPAVVPREILVQVEPHEAQET 372 Query: 316 EISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE----ISHQMILKDFTK 371 + G V + VP++G+KR ++E NA Q + L+D + Sbjct: 373 RKVLEELRGAGVDLRVPQRGDKRSLMETVEKNAREQLKQHKIKRVGDLTARSAALQDIQE 432 Query: 372 KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAM 430 + P RIE D SHI G V +VV + K+ YR++ + +D A Sbjct: 433 ALDMEQAPLRIECTDISHIQGTDVVASLVVFEDGLPRKSDYRRYRIKEAAGDGHSNDVAS 492 Query: 431 MRMVLERRFSQLIKNE-------------ENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + V RRF + +++ + F P + I+DGG Q++ Sbjct: 493 IAEVTRRRFLRHHRDKLAVPEELDDATFSDEKVEEMSTDNRRFAYPPQLFIVDGGAPQVA 552 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 AAQ V +L + + +T++ +AK + E + + ++L P L+ +Q++RDEA Sbjct: 553 AAQEVFDELGIVD-VTLVGLAKRLE-----EIWLPGDPDPVILPRNSPALFLLQQVRDEA 606 Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR++R K S LD+I G+G R+ L++ FG+V + ++ +A + G Sbjct: 607 HRFAITYHRQQRSKRMRVSELDDIRGLGQARRTELVKHFGSVARLREATVGDIAGVRGFG 666 Query: 597 KKIACKIYNHFHK 609 K+A ++ H Sbjct: 667 PKLAQSVFEALHP 679 >gi|262402433|ref|ZP_06078994.1| excinuclease ABC subunit C [Vibrio sp. RC586] gi|262351215|gb|EEZ00348.1| excinuclease ABC subunit C [Vibrio sp. RC586] Length = 588 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 204/607 (33%), Positives = 318/607 (52%), Gaps = 31/607 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M + V+YVGKA +L+KR+ SY N + + ++S I I TVT TE EAL+LE Sbjct: 1 MYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTVTHTETEALILEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK+ P++N+LLRDDKS+PYI ++ HK P L HR + +G YFGP+ AV +T Sbjct: 61 NYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGTKKRRGEYFGPYPDSGAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193 ++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC IS + Y E V + FL G Sbjct: 120 LHLIQKIFPIRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQEIVQYLRLFLQG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHN 250 ++ + + M QA+ + +E A RD++ A+ +Q + +D Sbjct: 180 KDNQVLSMLVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDSLEDLDVLGFAQE 239 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLS 306 +ACI G+ G+ + F K S+++ ++ FL Q+Y + P I+L+ Sbjct: 240 IGMACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHSEARSIPARIILN 299 Query: 307 EEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365 EET L+ + + G KV V G + + ++ A NA + T K++ +++ Sbjct: 300 RGLTEETEALQTAISELAGRKVTFHVNPTGTRGRYLKLANTNALTAITTKINHKMTISQR 359 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 K ++ + I R+E +D SH MG S + VV + G VK +YR++N+ + Sbjct: 360 FKALQEELGMDAIT-RMECFDISHTMGESTIASCVVFNQEGPVKQEYRRYNI--TGITGG 416 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD A M VLERR+S+ + PD++ +DGGKGQL+ A ++ Sbjct: 417 DDYAAMAQVLERRYSKQLD---------------SSKIPDIIFIDGGKGQLNRAYEIISS 461 Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 + II IAKG R G+E G+ L P L+ IQ +RDE+H AI Sbjct: 462 CWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQHIRDESHNHAIA 521 Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR +R K S L+ I G+GP R++ LL+ G ++ + R+S E +A + GIS +A Sbjct: 522 GHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPGISHALAEN 581 Query: 603 IYNHFHK 609 IY + Sbjct: 582 IYQALKQ 588 >gi|322374742|ref|ZP_08049256.1| excinuclease ABC subunit C [Streptococcus sp. C300] gi|321280242|gb|EFX57281.1| excinuclease ABC subunit C [Streptococcus sp. C300] Length = 615 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 168/619 (27%), Positives = 291/619 (47%), Gaps = 41/619 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDGAYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G + + + + M +A ++E A +RD + A+ ++ + Sbjct: 182 SMAQEVSDFLKGQDDKIIDDLKGKMAKAAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ +E ++ ++ K P++GEK++++ A+ NA + Sbjct: 302 VPNEVLIPQDIDEEAVKALADTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGHLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ + + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L+ + +QR++ Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I+G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTS 612 G+ + +A + + + Sbjct: 575 GVPRAVAEAVQRKLNPQEA 593 >gi|227824382|ref|ZP_03989214.1| excinuclease ABC subunit C [Acidaminococcus sp. D21] gi|226904881|gb|EEH90799.1| excinuclease ABC subunit C [Acidaminococcus sp. D21] Length = 608 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 188/625 (30%), Positives = 317/625 (50%), Gaps = 39/625 (6%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFT 61 + +P+ PGVY M D AGRV+YVGKA L+ R++SY + + ++ + + +++I Sbjct: 9 LKVLPDAPGVYIMHDAAGRVIYVGKAVILKNRVRSYFRKASQVSPKVRAINAHVDSIETI 68 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V +E+EAL+LE N+IK+ +PR+NI L+DDK++PY+ IT P +Y R Y Sbjct: 69 VCASEMEALILECNLIKKYRPRYNIELKDDKTYPYLKITVDEAYPRMYITRRVQKDGAKY 128 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GP+A V A+ +T+ ++ F LR C + RPCL + + RC PCTG++ +Y Sbjct: 129 YGPYADVGALRETMRLIRSMFPLRHCRSMNVK---RPCLQYHLHRCLAPCTGKVPLSEYR 185 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN--HNDSIY 239 + V E + G L+ ++ + M A+ K +YE A +RD L +L+ ++ + Sbjct: 186 KLVDEVLLLMDGKVTELRRQLTKKMQDASDKMEYEKAAQYRDSLLSLNKLEESQKATTES 245 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 D L + C++ F G+ G +FFL + A+ILS F+R++Y ++ Sbjct: 246 GDRDVIGLAVDDTGVCLEVFFVRNGKILGRDSFFLDDEKGEPAAEILSAFIREYYQEEHR 305 Query: 300 PENILLSE---EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P +++ ++ +LL ++ V I VP++G K +I A NA ++ ++L Sbjct: 306 PPKEIITSSGLFDKDRALLSQWLTEKNEKNVTILVPQRGIKHDLILMAEENAKKNLDERL 365 Query: 357 ST----EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + +D + +R++ +D SH G V MVV K Y Sbjct: 366 RKGRLALKPAEEAAEDLAHAIGMTGPLERMDCFDISHNQGAETVASMVVFRNGSPSKKDY 425 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472 R++ L + DD M+ V+ RR+ P ++I+DGG Sbjct: 426 RRYKLRSTEG-KPDDFKSMQEVVYRRYKDAED------------------IPSLIIIDGG 466 Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532 KGQLS+A V++ + + + +I +AK + E F E+++L+ L+ IQ Sbjct: 467 KGQLSSALEVIRGVGL-GDVRVIGLAKREE-----EIFTEGAHESILLDKSSAALHLIQH 520 Query: 533 LRDEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDEAHRFAIT HRKR K+ S LD I GIGP R+ L Q F +++ + +S + L + Sbjct: 521 IRDEAHRFAITYHRKRLAKRNLVSVLDHIEGIGPKRRAALWQRFASLEKMREASVDDLEA 580 Query: 592 IEGISKKIACKIYNHFHKNTSHTPT 616 + +++ A K++ H + S T Sbjct: 581 VPTMTRTAAEKLFAFLHASASDKRT 605 >gi|229521334|ref|ZP_04410753.1| excinuclease ABC subunit C [Vibrio cholerae TM 11079-80] gi|229341432|gb|EEO06435.1| excinuclease ABC subunit C [Vibrio cholerae TM 11079-80] Length = 588 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 204/607 (33%), Positives = 319/607 (52%), Gaps = 31/607 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M + V+YVGKA +L+KR+ SY N + + ++S I I TVT TE EAL+LE Sbjct: 1 MYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTVTHTETEALILEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK+ P++N+LLRDDKS+PYI ++ HK P L HR + +G YFGP+ AV +T Sbjct: 61 NYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKKRRGEYFGPYPDSGAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193 ++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC IS + Y E VH + FL G Sbjct: 120 LHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQEIVHYLRLFLQG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHN 250 ++ + + M QA+ + +E A RD++ A+ +Q + +D Sbjct: 180 KDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDSLEDLDVLGFAQE 239 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLS 306 +ACI G+ G+ + F K S+++ ++ FL Q+Y + P I+L+ Sbjct: 240 NGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHSEARSIPARIILN 299 Query: 307 EEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365 EET L+ + + G KV V G + + ++ A NA + T K++ +++ Sbjct: 300 RGLTEETEALQTAISELAGRKVTFHVNPTGTRGRYLKLANTNALTAITTKINHKMTINQR 359 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 K ++ + I R+E +D SH MG S + VV + G +K +YR++N+ + Sbjct: 360 FKALQEELGMDAIT-RMECFDISHTMGESTMASCVVFNQEGPLKQEYRRYNI--TGITGG 416 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD A M VLERR+S+ + PD++ +DGGKGQL+ A ++ Sbjct: 417 DDYAAMAQVLERRYSKQLD---------------SSKIPDIIFIDGGKGQLNRAYEIISS 461 Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 + II IAKG R G+E G+ L P L+ IQ +RDE+H AI Sbjct: 462 CWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQHIRDESHNHAIA 521 Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR +R K S L+ I G+GP R++ LL+ G ++ + R+S E +A + GIS +A Sbjct: 522 GHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPGISHALAEN 581 Query: 603 IYNHFHK 609 IY + Sbjct: 582 IYQALKQ 588 >gi|229825769|ref|ZP_04451838.1| hypothetical protein GCWU000182_01132 [Abiotrophia defectiva ATCC 49176] gi|229790332|gb|EEP26446.1| hypothetical protein GCWU000182_01132 [Abiotrophia defectiva ATCC 49176] Length = 621 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 188/622 (30%), Positives = 310/622 (49%), Gaps = 21/622 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 +++P PGVY M + ++YVGKA +L+ R++ Y S N H+ +I M+ I++ + Sbjct: 7 ELKKLPSKPGVYIMHNELDEIIYVGKAISLKNRVRQYFQSINRHSPKIKRMVENIDHFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE N+IK +P++N +++DDKS+PYI +T + P + R + Sbjct: 67 IITDSELEALVLECNLIKEHRPKYNTMMKDDKSYPYIKVTVDEEFPRVMFTRKRGKDKAK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGP+ + + + + RPCL +QI RC G C G + S +Y Sbjct: 127 YFGPYPAHISETLELIHKIYKIRTCRRNLPKDIGKERPCLNYQIGRCDGVCQGYVESAEY 186 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + + E KFL+G + + I M +A+ K ++E A +RD L + + N Sbjct: 187 KKRIDEVIKFLNGDYEPILKMITDKMMEASEKLEFEEAANYRDMLTHVKRFSDRQKINSN 246 Query: 241 RM----DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 D +L A +Q F G+ F L + I + F++Q+YT Sbjct: 247 DNVDDRDVLALAKAGKEAVMQVFFIRAGRLIRREHFSLDNVGDDEKGAIYTDFIKQYYTG 306 Query: 297 KP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRS 351 P P++I+L++E EE LL + G KV I VPK+GEK + E A NA ++ Sbjct: 307 TPFIPKDIMLADEPEEKELLAQWLATKRGNKVNILVPKRGEKAGLTELAYKNAAMVLNQD 366 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 + + +K+ + + + KRIE YD S+ G VG MVV + KN Sbjct: 367 SERNKREQARTLGAVKELKELLGIKNDIKRIESYDISNTSGFENVGSMVVFEDGKPKKND 426 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK---QEYSFPSWPDVVI 468 YRKF + V +D A M VL RRF +K +E L K +E F +PD+++ Sbjct: 427 YRKFRIKG--VVGPNDYASMEEVLTRRFEHGLKEKEELKILEKAGMIKEGKFAHFPDIIL 484 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 +DGG+GQ++ VL+KL ++ I + + K + ++ + Sbjct: 485 MDGGRGQINICLKVLEKLGID--IAVAGLVKDDRHRTRG---IYYNNVEQPIDTHGELFK 539 Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 I R++DE HRFAI H+ R K +S LD+I GIG +R++ L++ F ++ I ++ E Sbjct: 540 LITRIQDETHRFAIEYHKLLRGKNQVHSVLDDIKGIGKVRRKALMKHFASLDDIKAATEE 599 Query: 588 TLASIEGISKKIACKIYNHFHK 609 LA++EG+++ A + F + Sbjct: 600 ELAAVEGMNEGAARAVREFFRE 621 >gi|324991041|gb|EGC22975.1| excinuclease ABC subunit C [Streptococcus sanguinis SK353] Length = 611 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 171/622 (27%), Positives = 293/622 (47%), Gaps = 41/622 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ESYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + + C + + +C ++ S+ + Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNPP----EKVCFYYHLGQCKAHTICQVDSQYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 + E FL G + + E + M A ++E A +RD + ++ ++ + Sbjct: 182 DLAQEVAAFLKGQDDQIIEDLRGKMASAAQTMEFEKAAEYRDLIQSIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P IL+ + +E ++ + K P++GEK++++ A NA + Sbjct: 302 KPNEILIPADIDEEAVRAMVDTKVLK-------PQRGEKKQLVNLATKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSIEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V++RR+S++I++ + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F + + L+ + +QR++ Sbjct: 458 QVNIAKEVIQE-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDQIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSHTP 615 G+ + +A + + T Sbjct: 575 GVPRAVAEAVREKLNPKTQEQE 596 >gi|168492779|ref|ZP_02716922.1| excinuclease ABC, C subunit [Streptococcus pneumoniae CDC3059-06] gi|182683548|ref|YP_001835295.1| excinuclease ABC subunit C [Streptococcus pneumoniae CGSP14] gi|221231440|ref|YP_002510592.1| UvrABC DNA repair system protein C [Streptococcus pneumoniae ATCC 700669] gi|298229725|ref|ZP_06963406.1| excinuclease ABC subunit C [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255477|ref|ZP_06979063.1| excinuclease ABC subunit C [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502409|ref|YP_003724349.1| excision endonuclease subunit UvrC [Streptococcus pneumoniae TCH8431/19A] gi|229557869|sp|B2IMT4|UVRC_STRPS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|254764946|sp|B8ZMK5|UVRC_STRPJ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|182628882|gb|ACB89830.1| excinuclease ABC subunit C [Streptococcus pneumoniae CGSP14] gi|183576998|gb|EDT97526.1| excinuclease ABC, C subunit [Streptococcus pneumoniae CDC3059-06] gi|220673900|emb|CAR68406.1| UvrABC DNA repair system protein C [Streptococcus pneumoniae ATCC 700669] gi|298238004|gb|ADI69135.1| excision endonuclease subunit UvrC [Streptococcus pneumoniae TCH8431/19A] Length = 615 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 168/620 (27%), Positives = 292/620 (47%), Gaps = 41/620 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEIYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G ++ + +++ M A ++E A +RD + A+ ++ + Sbjct: 182 SMAQEVSDFLKGQDNKIIDELKGKMAAAAQTMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 VPNEVLIPQDIDEEAVKALVDSKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ + + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L+ + +QR++ Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I+G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMRHFKSLTKIKEASVDEIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSH 613 G+ + +A + + + Sbjct: 575 GVPRAVAEAVQTKLNPQETE 594 >gi|307710657|ref|ZP_07647090.1| excinuclease ABC, C subunit [Streptococcus mitis SK564] gi|307618600|gb|EFN97743.1| excinuclease ABC, C subunit [Streptococcus mitis SK564] Length = 615 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 169/621 (27%), Positives = 292/621 (47%), Gaps = 41/621 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L R +G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDEGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E +FL G + + + + M A ++E A +RD + A+ ++ + Sbjct: 182 SMAQEVSEFLKGQDDKIIDDLKGKMAVAAQTMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 VPNEVLIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ + + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRV--------------QRDSLTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L+ + +QR++ Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSHT 614 G+ + +A + + + T Sbjct: 575 GVPRAVAEAVQRKLNPQETET 595 >gi|229529698|ref|ZP_04419088.1| excinuclease ABC subunit C [Vibrio cholerae 12129(1)] gi|229333472|gb|EEN98958.1| excinuclease ABC subunit C [Vibrio cholerae 12129(1)] Length = 588 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 203/607 (33%), Positives = 319/607 (52%), Gaps = 31/607 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M + V+YVGKA +L+KR+ SY N + + ++S I I TVT TE EAL+LE Sbjct: 1 MYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTVTHTETEALILEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK+ P++N+LLRDDKS+PYI ++ HK P L HR + +G YFGP+ AV +T Sbjct: 61 NYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKKRRGEYFGPYPDSGAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193 ++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC IS + Y E VH + FL G Sbjct: 120 LHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQEIVHYLRLFLQG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHN 250 ++ + + M QA+ + +E A RD++ A+ +Q + +D Sbjct: 180 KDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDSLEDLDVLGFAQE 239 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLS 306 +ACI G+ G+ + F K S+++ ++ FL Q+Y + P I+L+ Sbjct: 240 NGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHSEARSIPARIILN 299 Query: 307 EEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365 EET L+ + + G KV V G + + ++ + NA + T K++ +++ Sbjct: 300 RGLTEETEALQTAISELAGRKVTFHVNPTGTRGRYLKLSNTNASTALTTKINHKMTISQR 359 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 K ++ + I R+E +D SH MG S + VV + G +K +YR++N+ + Sbjct: 360 FKALQEELGMDSIT-RMECFDISHTMGESTMASCVVFNQEGPLKQEYRRYNI--TSITGG 416 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD A M VLERR+S+ + PD++ +DGGKGQL+ A ++ Sbjct: 417 DDYAAMAQVLERRYSKQLD---------------SSKIPDIIFIDGGKGQLNRAYEIISS 461 Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 + II IAKG R G+E G+ L P L+ IQ +RDE+H AI Sbjct: 462 CWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQHIRDESHNHAIA 521 Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR +R K S L+ I G+GP R++ LL+ G ++ + R+S E +A + GIS +A Sbjct: 522 GHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPGISHALAEN 581 Query: 603 IYNHFHK 609 IY + Sbjct: 582 IYQALKQ 588 >gi|138896241|ref|YP_001126694.1| excinuclease ABC subunit C [Geobacillus thermodenitrificans NG80-2] gi|134267754|gb|ABO67949.1| Excinuclease ABC, subunit C [Geobacillus thermodenitrificans NG80-2] Length = 592 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 180/613 (29%), Positives = 299/613 (48%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG Y M D G V+YVGKA +L+ R++SY H + ++ +I + + VT + Sbjct: 14 LPEQPGCYLMKDKHGTVIYVGKAKSLKARVRSYFTGT-HEGKTQRLVEEIADFEYIVTSS 72 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 EAL+LE N+IK+ P++N++L+ D+S+P+I IT K P L R G YFGP+ Sbjct: 73 NAEALILEMNLIKKHDPKYNVMLKGDESYPFIKIT-AEKHPRLLITRKVKKDGGKYFGPY 131 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A +T L R + LR C+ +R CL + + +C PC +S E+ V Sbjct: 132 PNVQAARETKKLLDRLYPLRKCSTLP----SRVCLYYHMGQCLAPCVYPVSDEQNKAMVE 187 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 + +FL+GG +K ++ M+QA ++E A +RD++AA+ ++N Sbjct: 188 QVVRFLNGGYQEVKRELTEKMHQAAEALEFERAKEYRDQIAAIEMTMEKQKIVFNDFIDR 247 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F ++K C+Q F G+ + + P+ Sbjct: 248 DVFGYAYDKGWMCVQVFFLRQGKLIERDVSIFPLYQDPDEEMLTFLGQFYTKAHHLKPKE 307 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 ++L + + + E+ V + PK+G+K+++IE A NA Sbjct: 308 VVLPTDIDGELVRELL-------GVHVVQPKKGKKKELIELANKNAAIALKEKFYFIERD 360 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E ++ + +P RIE +DNS+I G V +VV + K +YRK+ + Sbjct: 361 EERTIKAIERLGELLGIPTPR-RIEAFDNSNIYGADPVSALVVFLDGKPAKKEYRKYKVK 419 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ +D MR V+ RR+++++K PD++I+DGGKG LSA Sbjct: 420 T--VEGPNDYESMREVVRRRYTRVLKER--------------LPLPDLIIIDGGKGHLSA 463 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 + VL+ +L ++ + + +AK K E + L+ + Y +QR++DE Sbjct: 464 VRDVLENELGLD--VPLAGLAKDEKHRTS-ELIAGDPPAVVPLDRQSQEFYLLQRIQDEV 520 Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFA+T HR+ R+K +S LD+I G+G RK+ LL FG+VK + ++ E L I Sbjct: 521 HRFAVTFHRQTRQKTMLHSILDDIPGVGAKRKKALLNYFGSVKKMKEATVEELQRA-NIP 579 Query: 597 KKIACKIYNHFHK 609 + +A KIY H+ Sbjct: 580 RSVAEKIYEKLHE 592 >gi|332202493|gb|EGJ16562.1| excinuclease ABC, C subunit [Streptococcus pneumoniae GA41317] Length = 615 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 168/620 (27%), Positives = 292/620 (47%), Gaps = 41/620 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G ++ + +++ M A ++E A +RD + A+ ++ + Sbjct: 182 SMAQEVSDFLKGQDNKIIDELKGKMAAAAQTMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 VPNEVLIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGRPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ + + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L+ + +QR++ Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I+G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMRHFKSLTKIKEASVDEIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSH 613 G+ + +A + + + Sbjct: 575 GVPRAVAEAVQRKLNPQETE 594 >gi|253681767|ref|ZP_04862564.1| excinuclease ABC subunit C [Clostridium botulinum D str. 1873] gi|253561479|gb|EES90931.1| excinuclease ABC subunit C [Clostridium botulinum D str. 1873] Length = 622 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 189/621 (30%), Positives = 325/621 (52%), Gaps = 19/621 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 + +P+ PGVY M + G ++YVGKA L+ R++ Y S NH+ ++ M+ I + Sbjct: 7 QLKIIPDKPGVYLMKNSLGEIIYVGKAKVLKNRVRQYFQNSKNHSSKVKAMVKNIAEFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE N+IK+ +PR+NILL+DDK +P+I IT P ++ R + Sbjct: 67 IITDSEMEALILECNLIKKYRPRYNILLKDDKHYPFIKITVNEDFPRIFITRIRAKDGAK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ V + +TIN +++ F +R+C S+ + +PCL + IK C PC G +S + Sbjct: 127 YFGPYTEVAPMYETINLIKKIFPIRNCRLSIKSNSEPIKPCLNYHIKLCMAPCAGYVSKD 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 +Y + + + L+G ++ + ++ M +A+ + ++E A RD++ A+ I+ Sbjct: 187 EYGKIIKKIIDLLNGKDNGVIYELREKMTKASEELEFEKAADIRDKILAVEKIRERQKII 246 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 ++ D ++Y +++ C Q F G+ G F L I+S F++ FY Sbjct: 247 AGNFDNEDFINIYSDEHDWCAQIFFVRDGKIIGREHFILDKGIFEEKKDIISNFIKDFYG 306 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351 + + + LLE + G KV I VP +GEK+K+++ NA + Sbjct: 307 GTAFIPKNIYVPDIMDVELLENWLSLKKGSKVFIKVPLKGEKKKLLDLVESNAKNTLEQF 366 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 + + + IL + L IP RIE YD S+I G +VG M+V + + Sbjct: 367 KLKIKVDKELYTDILGELKNLLGLEDIPNRIEAYDISNIQGVDSVGTMIVFEDGRPKNSD 426 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILD 470 YR+F + VK +D M+ ++ RRF +K +E N + F +PD++++D Sbjct: 427 YRRFKIKT--VKGANDYDSMKEIITRRFKHGLKEIKEIQNRNLMLSGEKFSIFPDLILMD 484 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ++ A VL LN+ I + + K K V + + + + I+ I Sbjct: 485 GGKGQVNVALEVLNDLNI--PIPVCGMVKDDKHKTRG---LVYNNKEINIKSNNKIMQLI 539 Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DE HRF+IT HR R K+ +S L++I IG R++ LL+ FG++ I ++S L Sbjct: 540 TRIQDEVHRFSITYHRSLRNKRVLHSILEDIPNIGIKRRKELLKKFGSIDNIKKASYNEL 599 Query: 590 ASIEGISKKIACKIYNHFHKN 610 S + I++K A I ++F+K+ Sbjct: 600 LSTDSINEKAATSIIDYFNKH 620 >gi|90578923|ref|ZP_01234733.1| excinuclease ABC subunit C [Vibrio angustum S14] gi|90439756|gb|EAS64937.1| excinuclease ABC subunit C [Vibrio angustum S14] Length = 589 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 207/608 (34%), Positives = 326/608 (53%), Gaps = 31/608 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D G V+YVGKA +L+KR+ SY +N + ++ I N+ TVT TE EAL+LE Sbjct: 1 MYDATGVVIYVGKAKDLKKRLSSYFRTNVSGEKTRALVKNICNVDVTVTHTETEALILEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK+ P++N+LLRDDKS+PYIL++ K P L HR +G YFGP+ AV ++ Sbjct: 61 NYIKQYLPKYNVLLRDDKSYPYILLSAS-KHPRLSIHRGVKRRKGEYFGPYPDAGAVRES 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193 ++ +Q+ F +R C DSV+ +R+RPCL++QI RCSGPC IS + Y + V + FL G Sbjct: 120 LHLMQKIFPVRQCEDSVYANRSRPCLMYQIGRCSGPCVEGLISDDDYQQQVQLVRLFLQG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDC---FSLYHN 250 + + + M QA+ ++E A +RD++ AL IQ + D + H+ Sbjct: 180 KDRQVISIMVEKMEQASQALEFEQAARYRDQIQALRRIQEQQFVSQDNEDDIDVIGIAHS 239 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLS 306 LACI + G+ G+ ++F K ++T ++LS F+ Q+Y + P ILLS Sbjct: 240 NGLACIHGLYIRQGKILGSRSYFPKVPVDATLTEVLSGFVTQYYFNQVEGRVIPSVILLS 299 Query: 307 EEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365 E EE + + + G + +G + + ++ A NA + T K++ ++ Q Sbjct: 300 ETLGEEGETIAKALTEMAGRTITFKYNPRGTRAQYLKLAKTNAETALTSKINHRLTIQER 359 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 + L I R+E +D SH MG V VV + G +K +YR++N+ + Sbjct: 360 FFALQQALNLKPIS-RMECFDISHTMGEKTVASCVVFNQEGPLKQEYRRYNI--TGITGG 416 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD A M VLERR+S+ ++ ++ PD++ +DGG+GQLS A V+K Sbjct: 417 DDYAAMAQVLERRYSKNMELDK---------------IPDIIFIDGGRGQLSTAYDVVKP 461 Query: 486 --LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 + R ++ +AKG R G+E GE + P L+ IQ +RDE+H AI+ Sbjct: 462 YIADWPKRPLLVGVAKGTTRKPGLETLIFVTGEEFSMPSDSPALHLIQHIRDESHNHAIS 521 Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR +R K S L+++ GIGP R++ LL+ G ++ + ++S E +A + GIS +A K Sbjct: 522 GHRAQRAKVRKRSSLEDVEGIGPKRRQALLKYMGGMQELKKASKEEIAKVPGISPALAEK 581 Query: 603 IYNHFHKN 610 I + N Sbjct: 582 IVDALQHN 589 >gi|114565821|ref|YP_752975.1| excinuclease ABC subunit C [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|119367856|sp|Q0B0A0|UVRC_SYNWW RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|114336756|gb|ABI67604.1| Excinuclease ABC subunit C [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 601 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 198/615 (32%), Positives = 311/615 (50%), Gaps = 29/615 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFT 61 +++P PGVY + G+VLYVGKA L++R++SY + ++ M++ +++ F Sbjct: 10 LKKVPLQPGVYLFKNQEGQVLYVGKARVLRQRMRSYFQAPERMHPKVKAMMAWVSDFDFI 69 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT +E+EAL+LE N+IK KPR+NI LRDDKS+PYI +T K P +Y R+ Y Sbjct: 70 VTHSEMEALILENNLIKSYKPRYNIDLRDDKSYPYIKVTVADKFPRVYLAREKKDGVSRY 129 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V ++ T+ L F LRSC + R RPCL + +C PC+GEIS E+Y Sbjct: 130 FGPYTDVTSLRDTLKLLNGVFGLRSC--RTMKSRRRPCLNRDMGKCLSPCSGEISEEEYS 187 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V FL G + + + M A ++E A RD++ +L + Sbjct: 188 QKVQALITFLEGDFQEIVREKEKEMAMAARSLEFEKAARLRDQIQSLRQLGEKQKIELAS 247 Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 +D + + + G+ G TF+LK + + + +F++ +Y + P Sbjct: 248 PYELDLVGMLSGEKENLVLVFKVRSGKIVGKDTFWLKRPIQEDENEAMEFFIKHYYDENP 307 Query: 299 -CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P ILLS E+ L+E + ++V++ VP++GEK++++ L NA +K Sbjct: 308 DIPPEILLSHLPSESKLVEAWLKSRVSHRVELRVPQRGEKKQVLNMLLENARLLLEEKQR 367 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 E L + L +P R+E +D SH+ G V MVV K YR F + Sbjct: 368 EENKQLAALSHLARVLDLEVVPNRLECFDVSHLAGEETVASMVVFVGGQPEKKAYRHFKI 427 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 +D A + + RR + +F PD++++DGG GQ++ Sbjct: 428 RTQQ---NNDTASLAETVRRRLENARQ-----------ANPAFLPEPDLILVDGGLGQVN 473 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A VL+++N++ I + ++A E + K + LVL RD L +QRLRDEA Sbjct: 474 AVAAVLQEMNLD--IPLFALA-----EKNEEIYRPGKSQPLVLAARDNGLQLLQRLRDEA 526 Query: 538 HRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAI +RKRR KK S LDEI GIG RK+ LL F +V I +S + +A++ G++ Sbjct: 527 HRFAIEYNRKRRAKKIRSSALDEIPGIGKQRKKNLLVHFTSVAKIKEASLDEIAAVPGMN 586 Query: 597 KKIACKIYNHFHKNT 611 +K A + FH Sbjct: 587 RKAALAVIEFFHNQD 601 >gi|323351458|ref|ZP_08087114.1| excinuclease ABC subunit C [Streptococcus sanguinis VMC66] gi|322122682|gb|EFX94393.1| excinuclease ABC subunit C [Streptococcus sanguinis VMC66] Length = 611 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 173/622 (27%), Positives = 294/622 (47%), Gaps = 41/622 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + + C + + +C ++ S+ + Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNPP----EKVCFYYHLGQCKAHTICQVDSQYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E E FL G + + E + M A ++E A +RD + ++ ++ + Sbjct: 182 ELAQEVAAFLKGQDDQIIEDLRGKMAGAAQAMEFEKAAEYRDLIQSIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P IL+ + +E ++ I K P++GEK++++ A+ NA + Sbjct: 302 KPNEILIPADIDEEAVRAIVDTKVLK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSIEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V++RR+S++I++ + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F + + L+ + +QR++ Sbjct: 458 QVNIAKEVIQE-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDQIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSHTP 615 G+ + +A + + T Sbjct: 575 GVPRAVAEAVREKLNPKTQEQE 596 >gi|317506092|ref|ZP_07963917.1| excinuclease ABC [Segniliparus rugosus ATCC BAA-974] gi|316255591|gb|EFV14836.1| excinuclease ABC [Segniliparus rugosus ATCC BAA-974] Length = 671 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 187/646 (28%), Positives = 305/646 (47%), Gaps = 49/646 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 ++ +P PGVY+ D G+V+YVGKA NL+ R+ +Y R M++ + + + Sbjct: 28 AAGTIPTEPGVYRFRDPDGQVVYVGKAKNLRARLSNYFQDLYALAPRTRQMVTTASTVEW 87 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TEVEAL LE N IK PRFN+ RDDKS+P + ++ + P L+ +R + Sbjct: 88 TVVATEVEALQLEFNWIKEFDPRFNVRYRDDKSYPMLAVSLNEEYPRLFVYRGARRKGVR 147 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP++ A+ T++ L + F R+C++ VF+ RPCLL I +C+ PC G +S+ Sbjct: 148 YFGPYSHAWAIRNTVDLLTKVFPARTCSNGVFKRHGQIGRPCLLGYIGKCAAPCVGRVSA 207 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 +++ V FL+GG L + M A + D+E+A RD LAAL H Sbjct: 208 DEHRAIVESFCDFLAGGADTLVRDTRKRMLAAADELDFETAARLRDELAALDKALEHQAV 267 Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNA---QILSYFLR 291 ++ + D + + +Q G+ RG + + + +++ FL Sbjct: 268 VFADGSDADVVAFDSDDLEVAVQVFQVREGRVRGQRGWVVDNVYGDSENAKGEMVEEFLL 327 Query: 292 QFYTD-----------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQ 334 QFY D P IL+ E ++ + + G V + VP++ Sbjct: 328 QFYGDLAEYAAATDRFGRSARFVAAPREILVPELPDDVKGVTTWLSELRGSAVALRVPQR 387 Query: 335 GEKRKIIEQALINAHRSHTQKLSTEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHI 390 G+KRK++E NAH + Q L++ + LP P R+E D SH+ Sbjct: 388 GDKRKLMETVARNAHEALAQHKLRRSGDFTERSAALQEIYEALDLPAPPIRMECVDISHV 447 Query: 391 MGCSAVGCMVVVGENGFVKNQYRKFNLHP-NDVKTQDDCAMMRMVLERRFSQLIKNEENL 449 G V +VV + K YR + + + V DD + V+ RRF+ + Sbjct: 448 QGTDVVASLVVFDDGLPKKADYRHYTIKGADGVVGNDDTGNIAEVVRRRFAHRQSEK--- 504 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 P ++++DGG+ Q+ AA L + + I ++ IAK + E Sbjct: 505 -------GSDSRPDPGLLVIDGGQPQVRAAFEALVEAGASD-IPVVGIAKRLE-----EL 551 Query: 510 FFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRK 568 + + + ++L R P L+ +QR+RDEAHRFAI HR +R K S LDE+ G+G R+ Sbjct: 552 WLSDEDDPVILPRRSPGLFLLQRIRDEAHRFAIGHHRSKRSKRMTASALDEVKGLGEHRR 611 Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 L++ FG+V+ +S +S E + ++ G +A + K T Sbjct: 612 AQLVKHFGSVRKLSAASAEEIVALPGFGPVLAASVVAALRKAEPST 657 >gi|237649860|ref|ZP_04524112.1| excinuclease ABC subunit C [Streptococcus pneumoniae CCRI 1974] gi|237821277|ref|ZP_04597122.1| excinuclease ABC subunit C [Streptococcus pneumoniae CCRI 1974M2] Length = 614 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 169/622 (27%), Positives = 292/622 (46%), Gaps = 41/622 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDETYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G ++ + +++ M A ++E A +RD + A+ ++ + Sbjct: 182 SMAQEVSDFLKGQDNKIIDELKGKMAAAAQTMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 VPNEVLIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ + + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L+ + +QR++ Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I+G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMRHFKSLTKIKEASVDEIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSHTP 615 G+ + +A + + P Sbjct: 575 GVPRAVAEAVQRKLNPQGEALP 596 >gi|331266838|ref|YP_004326468.1| excinuclease, subunit C [Streptococcus oralis Uo5] gi|326683510|emb|CBZ01128.1| excinuclease, subunit C [Streptococcus oralis Uo5] Length = 615 Score = 500 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 168/618 (27%), Positives = 289/618 (46%), Gaps = 41/618 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK +P++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENQPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKEDEAYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G + + + + M A ++E A +RD + A+ ++ + Sbjct: 182 SMAQEVSDFLKGQDDKIIDDLKGKMAVAAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 VPNEVLIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ + + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQRE--------------SLTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L+ + +QR++ Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I+G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 574 Query: 594 GISKKIACKIYNHFHKNT 611 G+ K +A + + Sbjct: 575 GVPKAVAEAVQRKLNPQE 592 >gi|196250198|ref|ZP_03148892.1| excinuclease ABC, C subunit [Geobacillus sp. G11MC16] gi|196210382|gb|EDY05147.1| excinuclease ABC, C subunit [Geobacillus sp. G11MC16] Length = 590 Score = 500 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 180/613 (29%), Positives = 299/613 (48%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG Y M D G V+YVGKA +L+ R++SY H + ++ +I + + VT + Sbjct: 12 LPEQPGCYLMKDKHGTVIYVGKAKSLKARVRSYFTGT-HEGKTQRLVEEIADFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 EAL+LE N+IK+ P++N++L+ D+S+P+I IT K P L R G YFGP+ Sbjct: 71 NAEALILEMNLIKKHDPKYNVMLKGDESYPFIKIT-AEKHPRLLITRKVKKDGGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A +T L R + LR C+ +R CL + + +C PC +S E+ V Sbjct: 130 PNVQAARETKKLLDRLYPLRKCSTLP----SRVCLYYHMGQCLAPCVYPVSDEQNKAMVE 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 + +FL+GG +K ++ M+QA ++E A +RD++AA+ ++N Sbjct: 186 QVVRFLNGGYQEVKRELTEKMHQAAEALEFERAKEYRDQIAAIEMTMEKQKIVFNDFIDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F ++K C+Q F G+ + + P+ Sbjct: 246 DVFGYAYDKGWMCVQVFFLRQGKLIERDVSIFPLYQDPDEEMLTFLGQFYTKAHHLKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 ++L + + + E+ V + PK+G+K+++IE A NA Sbjct: 306 VVLPTDIDGELVRELL-------GVHVVQPKKGKKKELIELANKNAAIALKEKFYFIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E ++ + +P RIE +DNS+I G V +VV + K +YRK+ + Sbjct: 359 EERTIKAIERLGELLGIPTPR-RIEAFDNSNIYGADPVSALVVFLDGKPAKKEYRKYKVK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ +D MR V+ RR+++++K PD++I+DGGKG LSA Sbjct: 418 T--VEGPNDYESMREVVRRRYTRVLKER--------------LPLPDLIIIDGGKGHLSA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 + VL+ +L ++ + + +AK K E + L+ + Y +QR++DE Sbjct: 462 VRDVLENELGLD--VPLAGLAKDEKHRTS-ELIAGDPPAVVPLDRQSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFA+T HR+ R+K +S LD+I G+G RK+ LL FG+VK + ++ E L I Sbjct: 519 HRFAVTFHRQTRQKTMLHSILDDIPGVGAKRKKALLNYFGSVKKMKEATVEELQRA-NIP 577 Query: 597 KKIACKIYNHFHK 609 + +A KIY H+ Sbjct: 578 RSVAEKIYEKLHE 590 >gi|270293181|ref|ZP_06199392.1| excinuclease ABC, subunit C [Streptococcus sp. M143] gi|270279160|gb|EFA25006.1| excinuclease ABC, subunit C [Streptococcus sp. M143] Length = 615 Score = 500 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 166/616 (26%), Positives = 289/616 (46%), Gaps = 41/616 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK +P++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENQPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G + + + + M A ++E A +R+ + A+ ++ + Sbjct: 182 SMAQEVSDFLKGQDDKIIDDLKSKMAVAAQSMEFERAAEYRNLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 VPNEVLIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ + + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L+ + +QR++ Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I+G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 574 Query: 594 GISKKIACKIYNHFHK 609 G+ + +A + + Sbjct: 575 GVPRTVAEAVQRKLNP 590 >gi|254423285|ref|ZP_05037003.1| excinuclease ABC, C subunit [Synechococcus sp. PCC 7335] gi|196190774|gb|EDX85738.1| excinuclease ABC, C subunit [Synechococcus sp. PCC 7335] Length = 631 Score = 500 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 201/623 (32%), Positives = 318/623 (51%), Gaps = 28/623 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--SNNHTHRITHMISQINNIRF 60 +++P+ PGVY M D ++LY+GK+ +L+ R++SY +++HT RI M+ ++ +I Sbjct: 23 LKEIPQEPGVYYMKDETDQILYIGKSKSLRNRVRSYFREGAHHHTPRIATMVQKVADIEI 82 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI-QG 119 VT TE EAL LEAN+IK+ +P FN+LL+DDK +PY+ IT P ++ R + Sbjct: 83 IVTDTEAEALALEANLIKQHQPYFNVLLKDDKKYPYLCITWSEDYPRIFITRQRRKNAKN 142 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 Y+GP+ ++ +T+ +R F LR +F + RPCL + I +C G C I+ E Sbjct: 143 RYYGPYVDTGSLRRTLQIAKRVFPLRQRKQPLF--KDRPCLNYDIGQCPGVCQQLITPED 200 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + V G +H L + + M +A D+E A I RD++ L + + Sbjct: 201 YHKIVQRVAMVFQGRSHELIDMLNAKMEKAAEALDFEKAAIIRDQIKGLETLGANQKVAL 260 Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY- 294 D +L + ACIQ G+ G F + +S T +IL L + Y Sbjct: 261 PESTVSRDAIALSGDDQHACIQLFQIRAGRLVGRLGFVAEAESG-TPGEILQRVLEEHYR 319 Query: 295 --TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 P IL + +L Q G KV I VP++ K +++E NA Sbjct: 320 LVDPVEIPTEILSQHPLPDGDMLSDFLSAQKGRKVSIEVPQRQVKAELVEMVERNAQYEL 379 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + ++D + LP PKRIE YD SHI G AV VV + K Y Sbjct: 380 ARTQRFADRNTQAMQDLAEIVDLPGPPKRIEGYDISHIQGSDAVASQVVFVDGLPAKQHY 439 Query: 413 RKFNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 R + + V + D A M V+ RRF + ++ P Q P WPD+V++D Sbjct: 440 RTYKIKNPTVTSGHSDDFASMAEVIHRRFRRYAED-------PNLQRLGNPDWPDLVMID 492 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQLSA L+ +N+ + + ++S+AK + E F + ++L P + + Sbjct: 493 GGKGQLSAVVAQLQDMNLLSELRVVSLAKRHE-----EIFLPGEKQSLETEADQPGVMLL 547 Query: 531 QRLRDEAHRFAITTH-RKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 +RLRDEAHRFA++ H +KR + S L++I G+G R++ LL SF ++ I +SP+ L Sbjct: 548 RRLRDEAHRFAVSFHRKKRMTRMRRSRLEDIPGLGHNRRKQLLASFRSIDYIREASPKQL 607 Query: 590 ASIEGISKKIACKIYNHFHKNTS 612 AS++GI ++A +IY +FH + + Sbjct: 608 ASVDGIGPQLAKQIYEYFHPSAA 630 >gi|257068680|ref|YP_003154935.1| Excinuclease ABC subunit C [Brachybacterium faecium DSM 4810] gi|256559498|gb|ACU85345.1| Excinuclease ABC subunit C [Brachybacterium faecium DSM 4810] Length = 650 Score = 500 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 187/605 (30%), Positives = 291/605 (48%), Gaps = 28/605 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA NL++R+ +Y + R M++ ++ +TV Sbjct: 13 TIPTRPGVYRFRDEHGRVIYVGKAKNLRQRLVNYFQDLSVLHERTRRMVTTAASVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE IK PRFN+ RDDKS+PY+++T K+P ++ R FG Sbjct: 73 GTEVEALTLEYTWIKEFDPRFNVKFRDDKSYPYLVLTMGEKVPRVHITRRPRAKGDRTFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFR---HRTRPCLLFQIKRCSGPCTGEISSEKY 180 P+ V A+ +T++ + R F +RSC V+R RPCLL I +C+ PC G+IS E++ Sbjct: 133 PYPQVGAIRETLDLMLRVFPIRSCTAGVYRRAERSGRPCLLGFIGKCAAPCVGDISEEEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + F++G +I + M A DYE+A RD L AL + N + Sbjct: 193 RRLAEQFADFMAGNTSKYTRRIEQRMKAAAAAMDYETAAGLRDDLQALEKVMEKNSVVLS 252 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D L ++ A +Q G+ RG + + +S+ ++ + Y + Sbjct: 253 DATDADLIGLAQDELEASVQVFHVRGGRIRGQRGWTAEILDDSSGPDLIERAMTTLYAEG 312 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P +L+ + G V + VP++GEK+ ++ NA + Sbjct: 313 EAPREVLVPILPTNRE----QVLQMMGRTVDLRVPQRGEKKDLLRTVGENATEALRLHRL 368 Query: 358 TE----ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + L+D + L P RIE +D SH G + VG VV + K++YR Sbjct: 369 KRTGDLTARTKALEDLGEALELAEPPLRIECFDISHSHGTNVVGSQVVFEDGLPKKSEYR 428 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++++ +DD A M V+ RR + + ++ F P ++++DGG Sbjct: 429 RYSVSGA--AARDDTASMYDVISRRLKHHL----DPPEQSEEDRRRFAYPPSLILVDGGP 482 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 Q++AAQ L + + I + IAK + E + ++L L+ +QRL Sbjct: 483 PQVAAAQRAFDDLGITD-IALAGIAKRLE-----EIWLPGDDYPVILPRTSEALFLVQRL 536 Query: 534 RDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDEAHRFAIT HR +R +A S LD I G+GP R+R LL F TV I +S E L + Sbjct: 537 RDEAHRFAITYHRSKRGRAMQASALDGIPGLGPARRRALLDRFVTVSAIRAASEEELVEV 596 Query: 593 EGISK 597 +GI Sbjct: 597 DGIGP 601 >gi|225858452|ref|YP_002739962.1| excinuclease ABC subunit C [Streptococcus pneumoniae 70585] gi|254764945|sp|C1C5Y6|UVRC_STRP7 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|225720481|gb|ACO16335.1| excinuclease ABC, C subunit [Streptococcus pneumoniae 70585] Length = 614 Score = 500 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 170/622 (27%), Positives = 291/622 (46%), Gaps = 41/622 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G + + + + M A ++E A +RD + A+ ++ + Sbjct: 182 SMAQEVSDFLKGHDDKIIDDLKSKMAVAAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 VPNEVLIPQDIDEEAVKALVDSKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ + + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L+ + +QR++ Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DEAHRFAIT HR+ R K ++S LD I+G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEAHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSHTP 615 G+ + +A + + P Sbjct: 575 GVPRVVAEAVQRKLNPQGEALP 596 >gi|324992798|gb|EGC24718.1| excinuclease ABC subunit C [Streptococcus sanguinis SK405] gi|327460235|gb|EGF06572.1| excinuclease ABC subunit C [Streptococcus sanguinis SK1057] Length = 611 Score = 500 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 170/622 (27%), Positives = 293/622 (47%), Gaps = 41/622 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK +P++NI+L+DDKS+P+I IT+ P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENQPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + + C + + +C ++ S+ + Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNPP----EKVCFYYHLGQCKAHTICQVDSQYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E E FL G + + E + M A ++E A +RD + ++ ++ + Sbjct: 182 ELAQEVAAFLKGQDDQIIEDLRGKMAGAAQTMEFEKAAEYRDLIQSIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P IL+ + +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 KPNEILIPADIDEEAVRAMVDTKVLK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSIEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V++RR+S++I++ + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V++ + I I + K K E F + + L+ + +QR++ Sbjct: 458 QVNVAKEVIQD-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+ L++ F ++ I ++ + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEATVDQIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSHTP 615 G+ + +A + + T Sbjct: 575 GVPRAVAEAVREKLNPKTQEQE 596 >gi|306825698|ref|ZP_07459037.1| excision endonuclease subunit UvrC [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432059|gb|EFM35036.1| excision endonuclease subunit UvrC [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 607 Score = 500 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 167/618 (27%), Positives = 290/618 (46%), Gaps = 41/618 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G + + + + M +A ++E A +RD + A+ ++ + Sbjct: 182 SMAQEVSDFLKGQDDKIIDDLKGKMVKAAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ ++ ++ + K P++GEK++++ A+ NA + Sbjct: 302 VPNEVLIPQDIDQEAVKALVDTKIVK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ ++ + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQRDG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L+ + +QR++ Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDEIVGV- 574 Query: 594 GISKKIACKIYNHFHKNT 611 G+ + +A + + Sbjct: 575 GVPRAVAEAVQRKLNPQE 592 >gi|149021578|ref|ZP_01835633.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP23-BS72] gi|147930274|gb|EDK81259.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP23-BS72] Length = 614 Score = 500 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 169/622 (27%), Positives = 291/622 (46%), Gaps = 41/622 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDETYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G ++ + + + M A ++E A +RD + A+ ++ + Sbjct: 182 SMAQEVSDFLKGQDNKIIDDLKSKMAVAAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 VPNEVLIPQDIDEEAVKALVDSKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ + + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L+ + +QR++ Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I+G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSHTP 615 G+ + +A + + P Sbjct: 575 GVPRVVAEAVQRKLNPQGEALP 596 >gi|15602722|ref|NP_245794.1| excinuclease ABC subunit C [Pasteurella multocida subsp. multocida str. Pm70] gi|12721167|gb|AAK02941.1| UvrC [Pasteurella multocida subsp. multocida str. Pm70] Length = 611 Score = 500 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 209/617 (33%), Positives = 342/617 (55%), Gaps = 32/617 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + GVY+M D V+YVGKA +L+KR+ SY ++ + + ++S I I T+T Sbjct: 13 NVSHDAGVYRMYDEKDTVIYVGKAKDLKKRLSSYFRTHLSSKKTEALVSAIARIDTTITS 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N IK +PR+N+LLRDDKS+PYIL+T + P + +R S I+G YFGP Sbjct: 73 SETEALLLEHNYIKTYQPRYNVLLRDDKSYPYILLT-AERHPRISAYRGSKKIKGEYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183 + AV +T++ LQ+ F +R C ++V+ +R+RPCL +QI RC+ PC ++ E Y++ Sbjct: 132 YPHASAVRETLSLLQKLFPIRQCENAVYNNRSRPCLQYQIGRCAAPCVAGYVTDEAYLQQ 191 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240 V A+ FL G + + E + M QA+L D+E A RD++ A+ + + Sbjct: 192 VELARLFLQGKDQQVLEHLIHKMEQASLALDFEEAARIRDQIQAVRAVMEKQFVSTERLD 251 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296 MD S+ + +AC+Q F G+ G ++F K + +T +++ + F+ QFY Sbjct: 252 DMDILSIAYQLGIACVQVLFIRQGKMLGNRSYFPKVPANTTLSELTATFVGQFYLQAHQG 311 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 + P I++ + E + LE +Q G KV I +GEK K ++ A +NA + +L Sbjct: 312 RSIPHRIIVDHKLSEKTELEELLTQQAGRKVHIQDNTKGEKSKYLQLAKMNAQSALVTQL 371 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + + L +R+E +D SH MG + VV ++G +K+ YR+FN Sbjct: 372 KQSTLLKERYQALQAILQL-GEIRRMECFDISHTMGEQTIASCVVFNQDGPLKSDYRRFN 430 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + DD A M L +R+ + ++ E+ PDV+ +DGGKGQL Sbjct: 431 I--TGITAGDDYAAMEQALLKRYDKPLEQEK---------------IPDVIFIDGGKGQL 473 Query: 477 SAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQR 532 + A KLNV +N+ +I +AKG R AG+E + K+G+ L L L+ IQ Sbjct: 474 NRALQTFSKLNVKWDKNQPHLIGVAKGIDRKAGLETLILSKQGKILHLPSDHLALHLIQH 533 Query: 533 LRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+H+ AI+ HRK+R++A S L+ + G+G R++ LL+ G ++ + +++ + +AS Sbjct: 534 IRDESHQHAISGHRKKRQQAFLQSGLESVEGVGAKRRQTLLKYLGGMQGVKKATLDEIAS 593 Query: 592 IEGISKKIACKIYNHFH 608 + GISK +A +IY+ Sbjct: 594 VPGISKALAERIYDALR 610 >gi|145295713|ref|YP_001138534.1| excinuclease ABC subunit C [Corynebacterium glutamicum R] gi|189038043|sp|A4QEG6|UVRC_CORGB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|140845633|dbj|BAF54632.1| hypothetical protein [Corynebacterium glutamicum R] Length = 696 Score = 500 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 183/689 (26%), Positives = 298/689 (43%), Gaps = 89/689 (12%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D RV+YVGKA NL+ R+ +Y R M+ +++ +TV Sbjct: 13 TIPTEPGVYKFRDENRRVIYVGKAKNLRSRLSNYFQDVTQLHPRTRQMVFAASSVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +EVEAL LE IKR PRFN+ RDDK++P + ++ + P + R YFG Sbjct: 73 SSEVEALQLEYTWIKRFDPRFNVKYRDDKTYPMLAVSTGERFPRAFFFRGPRRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ AV +T++ L R F +R+C+ VF RPCLL I +C+ PC G +S E++ Sbjct: 133 PYSHAWAVRETLDLLTRVFPMRTCSKGVFNRHESLGRPCLLGYIDKCAAPCVGRVSEEEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E V F++G + K+ +M A + D+E A RD L A+ + + Sbjct: 193 REIVDGFTSFMAGHTDKVTRKLNADMMAAAEELDFERAARLRDDLEAIDKVMEKQAVVLG 252 Query: 241 R---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTF-----------------FLKTDSES 280 D + ++ A +Q G+ RG + + D+ Sbjct: 253 DGTDADIIAFATDQLEAAVQVFNIRGGRIRGQRGWVVDKPGDYAGLLVDATTQPEGDAPE 312 Query: 281 TNAQI---LSYFLRQFYTDKP-----------------------------------CPEN 302 T+ + + FL QFY D P Sbjct: 313 TDPALPFLMQDFLVQFYGDAVERAETEAKEDAAVIERRGVDKHSFEEAAPVTRASVVPRE 372 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE--- 359 IL+ E + G V VP++G+KR ++E NA Q Sbjct: 373 ILVQVAPNEAEQTLKVLEELRGAGVDARVPQRGDKRALMETVERNAKELLKQHKLKRVGD 432 Query: 360 -ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + L++ + + P RIE D SHI G V +VV + K+ YR++ + Sbjct: 433 LTARSAALQELQEALDMEQAPLRIECTDISHIQGTDVVASLVVFEDGLPRKSDYRRYRVK 492 Query: 419 PNDVKTQ-DDCAMMRMVLERRFSQLIKNE---------------ENLNFHPKKQEYSFPS 462 +D A + + RRF + +++ + F Sbjct: 493 EAAGDGHSNDVASIAEITRRRFLRHNQDKLAVPEAEEFDGSTFSDEKVEEMSTDARRFAY 552 Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522 P + I+DGG Q++AAQ V +L + + + +I +AK + E + + ++L Sbjct: 553 PPQIFIVDGGAPQVAAAQEVFDELGIVDVV-LIGLAKRLE-----EIWLPGDPDPVILPR 606 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMI 581 L+ +Q++RDEAHRFAIT HR++R K S LD I G+G R+ L++ FG+V + Sbjct: 607 NSQALFLLQQIRDEAHRFAITYHRQQRSKRMRVSELDSIKGLGQSRRTELVKHFGSVAKL 666 Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKN 610 +S E ++ ++G K+A +Y H + Sbjct: 667 KEASVEDISQVKGFGPKLAEAVYEGLHAS 695 >gi|288553651|ref|YP_003425586.1| excinuclease ABC subunit C [Bacillus pseudofirmus OF4] gi|288544811|gb|ADC48694.1| excinuclease ABC subunit C [Bacillus pseudofirmus OF4] Length = 596 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 185/614 (30%), Positives = 298/614 (48%), Gaps = 41/614 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY + H + ++S+I + + +T + Sbjct: 16 LPDQPGCYLMKDRQGTIIYVGKAKVLKNRVRSYFTGS-HDAKTQRLVSEIVDFEYIMTSS 74 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++N++L+DDKS+PY+ IT + P L R+ G YFGP+ Sbjct: 75 NIEALILEMNLIKKHDPKYNVMLKDDKSYPYLKIT-SEEHPRLITTRNIKKDGGKYFGPY 133 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + A +T L R + LR C + CL + I +C PC E++ E+ E V Sbjct: 134 PNAGAANETKKLLDRLYPLRKCRTMP----DKVCLYYHIGQCLAPCVYEVTKEQNQEMVQ 189 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E KFL G+ +KE + M +A+ + ++E A RD L + ++ N Sbjct: 190 EITKFLRSGHDEIKEDLTEKMMKASEELNFERAKELRDLLQHMDQVREKQKMTINDHINR 249 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F ++K C+Q F G+ E+ + + D P Sbjct: 250 DVFGFAYDKGWMCVQVFFIRQGKLIERDVSIFPFYKEAKDDLLTFVGQFYLQKDHIKPAE 309 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 ILL EE + + ++ K PK+G+K+++++ A NA + Sbjct: 310 ILLPEEVDRELVEQLLEVKT-------AHPKRGKKKELLDLANQNASFALKEKFSLIERD 362 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E ++ + + RIE +DNS+I G V MV + + YRK+ + Sbjct: 363 EDRTIKAVERLGEAMGIATP-YRIEAFDNSNIQGTDPVSAMVTFLDGKPSRKDYRKYKIK 421 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V DD MR V++RR+ +L++ E L PD++++DGGKGQ++A Sbjct: 422 T--VTGPDDYGSMREVVKRRYVRLLQEERPL--------------PDLIVIDGGKGQIAA 465 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 AQ V++ + I + +AK K + L Y +QR++DE H Sbjct: 466 AQEVIED-ELGLFIPVCGLAKDEKHRTSQ-LLMGDPPVVIPLKRDSHEFYLLQRIQDEVH 523 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ R K + S LDEI G+G RKR LL+ FG+V+ + ++ E LA +EG+ K Sbjct: 524 RFAITFHRQTRSKTFFQSVLDEIPGVGEKRKRQLLKHFGSVRKMKEATIEELA-VEGVPK 582 Query: 598 KIACKIYNHFHKNT 611 +A IY H+ Sbjct: 583 NVAEAIYEKLHEKD 596 >gi|307155174|ref|YP_003890558.1| excinuclease ABC subunit C [Cyanothece sp. PCC 7822] gi|306985402|gb|ADN17283.1| excinuclease ABC, C subunit [Cyanothece sp. PCC 7822] Length = 631 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 192/626 (30%), Positives = 308/626 (49%), Gaps = 29/626 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFT 61 +++P PGVY M D G +LY+GK+ L+ R++SY + + R+ M+ Q+ +I F Sbjct: 15 LKEIPLEPGVYFMRDKNGDILYIGKSKKLRSRVRSYFRNFPVLSPRLALMVQQVADIEFI 74 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQG 119 VT TE EAL LEAN+IK+ +P FN+LL+DDK +PY+ IT P ++ R + Sbjct: 75 VTDTEAEALALEANLIKQHQPYFNVLLKDDKKYPYVCITWSEDYPRIFITRKRRLDNEKD 134 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 Y+GP+ + T++ ++R F LR +F + RPCL + I RC G C ISS++ Sbjct: 135 RYYGPYVDTGLLRYTLSIIKRIFPLRQRPKPLF--KDRPCLNYDIGRCPGVCQLLISSQE 192 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + V + G L + + M +A ++E A + RD++ AL + + Sbjct: 193 YHKTVQQVAMIFQGRTGELIHTLQKQMEEAANGLNFEKAAVIRDQIKALESLFSEQKVAL 252 Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQIL------SYF 289 D + + CIQ G+ G FF+ Sbjct: 253 PDDTVSRDVIAGAADGQHCCIQLFQIRAGRLVGRLGFFVDIKQPDETVTQTDQGAILQRV 312 Query: 290 LRQFY---TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 L + Y P ILL + L+ ++ G KV + VP++ K ++IE Sbjct: 313 LEEHYWLADPVEIPSEILLQYPLSDQESLKKWLSERKGKKVNLIVPQRQTKAELIEMVQR 372 Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 NA + + ++D L +PKRIE YD SHI G +AV VV + Sbjct: 373 NAKYELERTQRHSDRNLKAMEDLAAILDLEAVPKRIEGYDISHIQGSNAVASQVVFIDGV 432 Query: 407 FVKNQYRKFNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWP 464 K YR + + +VK DD A + V+ RRF + + + + P Sbjct: 433 AAKQHYRHYKIKNPEVKIGHSDDFASLAEVIRRRFRKY---SQKTSPPTPFLQGEGSDLP 489 Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524 D++++DGGKGQLSA VL++LN+ + + ++S+AK + E F + E L + Sbjct: 490 DLIMIDGGKGQLSAVVEVLQELNLLSELRVVSLAKQRE-----EIFLPGESEPLATDAEQ 544 Query: 525 PILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583 P + ++R+RDEAHRFA++ HR++R + S LDEI G+G R++ LL F +V I + Sbjct: 545 PGVQLLRRVRDEAHRFAVSFHRQQRITHSRRSRLDEIPGLGFGRQKQLLAHFHSVDYIRQ 604 Query: 584 SSPETLASIEGISKKIACKIYNHFHK 609 ++ L + GI +++A +IYN+FH Sbjct: 605 ATVSQLMEVSGIGEQLAQEIYNYFHP 630 >gi|325690624|gb|EGD32627.1| excinuclease ABC subunit C [Streptococcus sanguinis SK115] Length = 611 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 171/620 (27%), Positives = 294/620 (47%), Gaps = 41/620 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + + C + + +C ++ S+ + Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNPP----EKVCFYYHLGQCKAHTICQVDSQYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E E FL G + + E + M A ++E A +RD + ++ ++ + Sbjct: 182 ELAQEVAAFLKGQDDQIIEDLRGKMAGAAQAMEFEKAAEYRDLIQSIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F + +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYHVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P IL+ + +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 KPNEILIPADIDEEAVRAMVDTKVLK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSIEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V++RR+S++I++ + PD++++DGG+G Sbjct: 414 YKIKT--VIGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F + + L+ + +QR++ Sbjct: 458 QVNVAKEVIQE-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDQIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSH 613 G+ + +A + + T Sbjct: 575 GVPRAVAEAVREKLNPKTQE 594 >gi|15900526|ref|NP_345130.1| excinuclease ABC subunit C [Streptococcus pneumoniae TIGR4] gi|24212615|sp|Q97S07|UVRC_STRPN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|14972094|gb|AAK74770.1| excinuclease ABC, subunit C [Streptococcus pneumoniae TIGR4] Length = 614 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 169/622 (27%), Positives = 290/622 (46%), Gaps = 41/622 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G + + + + M A ++E A +RD + A+ ++ + Sbjct: 182 SMAQEVSDFLKGQDDKIIDDLKSKMAVAAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 VPNEVLIPQDIDEEAVKALVDSKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ + + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L+ + +QR++ Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I+G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSHTP 615 G+ + +A + + P Sbjct: 575 GVPRVVAEAVQRKLNPQGEALP 596 >gi|19552804|ref|NP_600806.1| excinuclease ABC subunit C [Corynebacterium glutamicum ATCC 13032] gi|62390474|ref|YP_225876.1| excinuclease ABC subunit C [Corynebacterium glutamicum ATCC 13032] gi|81760667|sp|Q8NQ55|UVRC_CORGL RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|21324361|dbj|BAB98985.1| Nuclease subunit of the excinuclease complex [Corynebacterium glutamicum ATCC 13032] gi|41325811|emb|CAF21600.1| Nuclease subunit of the excinuclease ABC complex [Corynebacterium glutamicum ATCC 13032] Length = 696 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 183/689 (26%), Positives = 298/689 (43%), Gaps = 89/689 (12%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D RV+YVGKA NL+ R+ +Y R M+ +++ +TV Sbjct: 13 TIPTEPGVYKFRDENRRVIYVGKAKNLRSRLSNYFQDVTQLHPRTRQMVFAASSVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +EVEAL LE IKR PRFN+ RDDK++P + ++ + P + R YFG Sbjct: 73 SSEVEALQLEYTWIKRFDPRFNVKYRDDKTYPMLAVSTGERFPRAFFFRGPRRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ AV +T++ L R F +R+C+ VF RPCLL I +C+ PC G +S E++ Sbjct: 133 PYSHAWAVRETLDLLTRVFPMRTCSKGVFNRHESLGRPCLLGYIDKCAAPCVGRVSEEEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E V F++G + K+ +M A + D+E A RD L A+ + + Sbjct: 193 REIVDGFTSFMAGHTDKVTRKLNADMMAAAEELDFERAARLRDDLEAIDKVMEKQAVVLG 252 Query: 241 R---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTF-----------------FLKTDSES 280 D + ++ A +Q G+ RG + + D+ Sbjct: 253 DGTDADIIAFATDQLEAAVQVFNIRGGRIRGQRGWVVEKPGDYAGLLVDATTQPEGDAPE 312 Query: 281 TNAQI---LSYFLRQFYTDKP-----------------------------------CPEN 302 T+ + + FL QFY D P Sbjct: 313 TDPALPFLMQDFLVQFYGDAVERAETEAKEDAAVIERRGVDKHSFEEAAPVTRASVVPRE 372 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE--- 359 IL+ E + G V VP++G+KR ++E NA Q Sbjct: 373 ILVQVAPNEAEQTLKVLEELRGAGVDARVPQRGDKRALMETVERNAKELLKQHKLKRVGD 432 Query: 360 -ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + L++ + + P RIE D SHI G V +VV + K+ YR++ + Sbjct: 433 LTARSAALQELQEALDMEQAPLRIECTDISHIQGTDVVASLVVFEDGLPRKSDYRRYRVK 492 Query: 419 PNDVKTQ-DDCAMMRMVLERRFSQLIKNE---------------ENLNFHPKKQEYSFPS 462 +D A + + RRF + +++ + F Sbjct: 493 EAAGDGHSNDVASIAEITRRRFLRHNQDKLAVPEAEEFDGSTFSDEKVEEMSTDARRFAY 552 Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522 P + I+DGG Q++AAQ V +L + + + +I +AK + E + + ++L Sbjct: 553 PPQIFIVDGGAPQVAAAQEVFDELGIVDVV-LIGLAKRLE-----EIWLPGDPDPVILPR 606 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMI 581 L+ +Q++RDEAHRFAIT HR++R K S LD I G+G R+ L++ FG+V + Sbjct: 607 NSQALFLLQQIRDEAHRFAITYHRQQRSKRMRVSELDSIKGLGQSRRTELVKHFGSVAKL 666 Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKN 610 +S E ++ ++G K+A +Y H + Sbjct: 667 KEASVEDISQVKGFGPKLAEAVYEGLHAS 695 >gi|28212079|ref|NP_783023.1| excinuclease ABC subunit C [Clostridium tetani E88] gi|32130290|sp|Q890Y5|UVRC_CLOTE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|28204522|gb|AAO36960.1| excinuclease ABC subunit C [Clostridium tetani E88] Length = 622 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 197/622 (31%), Positives = 326/622 (52%), Gaps = 19/622 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 + +PE PGVY M + + V+YVGKA L+ R+K Y S NH+ ++ M+S I + Sbjct: 7 QLKVLPEKPGVYLMKNSSDEVIYVGKAKILKNRVKQYFQQSKNHSEKVRVMVSNIAEFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE N+IK+ +P++NILL+DDK +PYI IT P ++ R + Sbjct: 67 IITDSEMEALILECNLIKKYRPKYNILLKDDKGYPYIKITINEDFPRVFISRTIAKDGSR 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCAD--SVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ AV +TI +++ F +RSC + TRPCL + IK CS PC IS + Sbjct: 127 YFGPYTDYSAVRETIELIKKIFPIRSCKRYIRDGQKPTRPCLNYHIKLCSAPCGAHISKQ 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y +++ + LSG + ++ +K+ M +A+ +E A RD++ A+ I I Sbjct: 187 GYALIINDIVQLLSGKDKDILDKLKNQMEEASNSLQFEKAASLRDKIFAVKKITEKQKII 246 Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D ++ ++ +C+Q F G+ G F L+ S+ +I++ F++ FY Sbjct: 247 MGSFQNEDYINIAKDEKDSCVQVFFVREGKIIGREHFILEYTSDEREYKIIAEFIKDFYG 306 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351 + + E+ LLE + G KV+I VPK+GEK +++ NA + Sbjct: 307 GAAFVPKTVYVPDIEDKYLLEQWLTIRRGSKVEIKVPKRGEKIELLNLVKKNAKLTLEQF 366 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 + L + +++ L + + +P RIE YD S+I G +VG MVV + K+ Sbjct: 367 KIKYLQDKALYEVALAELSDILGFDDMPNRIEAYDISNIQGVDSVGSMVVFEKGRSKKSD 426 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILD 470 YR+F + V+ +D MR +L RRF + I+ ++ + + F +PD++++D Sbjct: 427 YRRFKIKT--VEGANDYHSMREILRRRFQRGIEEIQQIQKRNLEFSSGKFSVFPDLILID 484 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKG ++ A VLK+LN+E I + + K + + + + L+ + I Sbjct: 485 GGKGHVNIALEVLKELNIE--IPVAGMVKDDSHTTRG-IIYNNIEKDISLDSN--AMKLI 539 Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DE HRFAI+ HR R K+ S LD+I IG +RK+ LL+ FG+++ I ++S + L Sbjct: 540 TRIQDEVHRFAISYHRTLRDKRVLKSILDDIPNIGTIRKKELLKKFGSIESIKKASIDQL 599 Query: 590 ASIEGISKKIACKIYNHFHKNT 611 I K+ A I F N Sbjct: 600 LETPSIDKRSALSIKEFFAPNE 621 >gi|119370545|sp|P57882|UVRC_PASMU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C Length = 608 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 209/617 (33%), Positives = 342/617 (55%), Gaps = 32/617 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + GVY+M D V+YVGKA +L+KR+ SY ++ + + ++S I I T+T Sbjct: 10 NVSHDAGVYRMYDEKDTVIYVGKAKDLKKRLSSYFRTHLSSKKTEALVSAIARIDTTITS 69 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N IK +PR+N+LLRDDKS+PYIL+T + P + +R S I+G YFGP Sbjct: 70 SETEALLLEHNYIKTYQPRYNVLLRDDKSYPYILLT-AERHPRISAYRGSKKIKGEYFGP 128 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183 + AV +T++ LQ+ F +R C ++V+ +R+RPCL +QI RC+ PC ++ E Y++ Sbjct: 129 YPHASAVRETLSLLQKLFPIRQCENAVYNNRSRPCLQYQIGRCAAPCVAGYVTDEAYLQQ 188 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240 V A+ FL G + + E + M QA+L D+E A RD++ A+ + + Sbjct: 189 VELARLFLQGKDQQVLEHLIHKMEQASLALDFEEAARIRDQIQAVRAVMEKQFVSTERLD 248 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296 MD S+ + +AC+Q F G+ G ++F K + +T +++ + F+ QFY Sbjct: 249 DMDILSIAYQLGIACVQVLFIRQGKMLGNRSYFPKVPANTTLSELTATFVGQFYLQAHQG 308 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 + P I++ + E + LE +Q G KV I +GEK K ++ A +NA + +L Sbjct: 309 RSIPHRIIVDHKLSEKTELEELLTQQAGRKVHIQDNTKGEKSKYLQLAKMNAQSALVTQL 368 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + + L +R+E +D SH MG + VV ++G +K+ YR+FN Sbjct: 369 KQSTLLKERYQALQAILQL-GEIRRMECFDISHTMGEQTIASCVVFNQDGPLKSDYRRFN 427 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + DD A M L +R+ + ++ E+ PDV+ +DGGKGQL Sbjct: 428 I--TGITAGDDYAAMEQALLKRYDKPLEQEK---------------IPDVIFIDGGKGQL 470 Query: 477 SAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQR 532 + A KLNV +N+ +I +AKG R AG+E + K+G+ L L L+ IQ Sbjct: 471 NRALQTFSKLNVKWDKNQPHLIGVAKGIDRKAGLETLILSKQGKILHLPSDHLALHLIQH 530 Query: 533 LRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+H+ AI+ HRK+R++A S L+ + G+G R++ LL+ G ++ + +++ + +AS Sbjct: 531 IRDESHQHAISGHRKKRQQAFLQSGLESVEGVGAKRRQTLLKYLGGMQGVKKATLDEIAS 590 Query: 592 IEGISKKIACKIYNHFH 608 + GISK +A +IY+ Sbjct: 591 VPGISKALAERIYDALR 607 >gi|301155981|emb|CBW15451.1| excinuclease UvrABC, endonuclease subunit [Haemophilus parainfluenzae T3T1] Length = 589 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 205/607 (33%), Positives = 334/607 (55%), Gaps = 32/607 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D +V+YVGKA +L+KR+ SY N + + ++S I++I T+T +E EALLLE Sbjct: 1 MYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVSSIHHIDTTITSSETEALLLEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK +PR+N+LLRDDKS+P+IL+T K + P + +R + I G YFGP+ AV +T Sbjct: 61 NFIKLYQPRYNVLLRDDKSYPFILLT-KERHPRITSYRGTKKIAGEYFGPYPHAGAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEI-SSEKYMEFVHEAKKFLSG 193 ++ +Q+ F +R C +SV+ +R+RPCL +QI RCS PC + + E+Y + V A+ FL G Sbjct: 120 LSLMQKLFPVRQCENSVYNNRSRPCLQYQIGRCSAPCVPDYVTDEEYNQQVELARLFLQG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMDCFSLYHN 250 + + + + M QA+ D+E A +RD++ A+ + + MD S+ + Sbjct: 180 KDQQVLDYLIGKMEQASRDLDFEGAARYRDQIQAVRAVIEKQFVSNERLDDMDIMSIAYQ 239 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLS 306 LAC+Q F G+ G ++F K + + +++ + F+ QFY + P +I++ Sbjct: 240 HGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTATFVGQFYLQGHQGRSIPNSIIVD 299 Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366 + +E + LE +Q G KV I +G+K K ++ A INA + +L Sbjct: 300 HKLDEKAELEALLTEQAGRKVVIQESAKGDKGKYLQLAQINAKAALATQLKQSSRMHERY 359 Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426 + + +P I R+E +D SH MG V VV + G +K+ YR+FN+ + D Sbjct: 360 QALCELLDMPEIK-RMECFDISHTMGNQTVASCVVFNQEGPLKSDYRRFNIEG--ITGGD 416 Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486 D A M L++R+ + + ++ PD++ +DGGKGQL+ A V L Sbjct: 417 DYAAMEQALKKRYDRDLDEDK---------------IPDIIFIDGGKGQLNRALEVFHHL 461 Query: 487 NV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 NV +NR +I +AKG R AG E + K+ + L L+ IQ +RDE+H AI Sbjct: 462 NVKWDKNRPHLIGVAKGVDRRAGQEVLIISKQDREIHLPDDSLALHLIQHIRDESHNHAI 521 Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 + HR++R+KA S L+ I G+G R++ LL+ G ++ + ++ + +AS+ GISK +A Sbjct: 522 SGHRQKRQKAFTQSGLETIEGVGAKRRQALLKYLGGLQGVKNATLDEIASVPGISKALAE 581 Query: 602 KIYNHFH 608 KI+ Sbjct: 582 KIFETLK 588 >gi|159027472|emb|CAO89437.1| uvrC [Microcystis aeruginosa PCC 7806] Length = 625 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 202/618 (32%), Positives = 314/618 (50%), Gaps = 29/618 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVT 63 ++P PGVY + D G +LY+GK+ L+ R++SY + + RI M+ Q+ I F VT Sbjct: 23 EIPLEPGVYFLRDQNGEILYIGKSKKLRSRVRSYFRPSQPLSPRIALMVRQVTEIEFIVT 82 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD--SSTIQGSY 121 TE E+L LEAN+IK+ +P FN LL+DDK +PYI IT P ++ R + + Y Sbjct: 83 DTEAESLALEANLIKQHQPHFNTLLKDDKKYPYICITWSETYPRIFITRKRSINNQKDRY 142 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GP+ + T++ ++RTF LR +F + RPCL + I RC G C IS + Y Sbjct: 143 YGPYVDTRLLRYTLHLIKRTFPLRQRPQPLF--KDRPCLNYDIGRCPGVCQKLISPQDYR 200 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 E + + G L +K+A M A+ D+E A RD++ L + Sbjct: 201 ETLQKVAMIFQGRTGELLDKLATKMLAASENLDFEQAATIRDQIRGLQALNTDQKVSLPD 260 Query: 242 ----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294 D +L ++ CIQ G+ G FF + S + +IL L + Y Sbjct: 261 DTVSRDAIALAKDEQHCCIQLFQVRSGRLVGRLGFFADSQS-ANEGEILQKVLEEHYLSV 319 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P ILL E E +L ++ G KV++TVP++ K ++ NA + Sbjct: 320 EGVEIPSEILLPCELPEGEVLAGWLREKKGRKVELTVPQRQSKADLLAMVEKNALYELEK 379 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + L+D LP +P RIE YD SHI G +AV VV + YR Sbjct: 380 TKRSADRDLQSLQDLAVILDLPALPHRIEGYDISHIQGSNAVASSVVFIDGVAANQHYRH 439 Query: 415 FNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472 + + +VK DD A + V+ RRF + +N +N+ +PD+V++DGG Sbjct: 440 YKIKNPEVKIGHSDDFASLAEVIRRRFRRYAENPDNIAESD--------DFPDLVMIDGG 491 Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532 KGQLSA VL ++N+ ++ ++S+AK + E F + L + P + ++R Sbjct: 492 KGQLSAVVTVLGEMNLLEQVKVVSLAKQRE-----EIFLPGESSPLETDKEQPGVQLLRR 546 Query: 533 LRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDEAHRFA++ HR++R +K+ S LDEI G+G R++ LL F ++ I +S E L Sbjct: 547 VRDEAHRFAVSFHRQQRMQKSRRSRLDEIPGLGFKRQKDLLAHFHSLDYIREASLEQLQQ 606 Query: 592 IEGISKKIACKIYNHFHK 609 + GI +++A +IYN+FH Sbjct: 607 VTGIGEQLAKEIYNYFHP 624 >gi|168576483|ref|ZP_02722357.1| excinuclease ABC, C subunit [Streptococcus pneumoniae MLV-016] gi|307067233|ref|YP_003876199.1| nuclease subunit of the excinuclease complex [Streptococcus pneumoniae AP200] gi|183577678|gb|EDT98206.1| excinuclease ABC, C subunit [Streptococcus pneumoniae MLV-016] gi|306408770|gb|ADM84197.1| Nuclease subunit of the excinuclease complex [Streptococcus pneumoniae AP200] Length = 615 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 167/620 (26%), Positives = 289/620 (46%), Gaps = 41/620 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIYKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT++H P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITNEH-YPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKNDEAYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G + + + + M ++E A +RD + A+ ++ + Sbjct: 182 SMAQEVSDFLKGQDDKIIDDLKSKMAVTAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 VPNEVLIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGRPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ + + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L+ + +QR++ Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I+G+GP RK+ L++ F ++ I + + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMRHFKSLTKIKEAGVDEIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSH 613 G+ + +A + + + Sbjct: 575 GVPRAVAEAVQRKLNPQETE 594 >gi|306829082|ref|ZP_07462272.1| excision endonuclease subunit UvrC [Streptococcus mitis ATCC 6249] gi|304428168|gb|EFM31258.1| excision endonuclease subunit UvrC [Streptococcus mitis ATCC 6249] Length = 615 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 165/621 (26%), Positives = 289/621 (46%), Gaps = 41/621 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK +P++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENQPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G + + + + M ++E A +RD + A+ ++ + Sbjct: 182 FMAQEVSDFLKGQDDKIIDDLKGKMAVVAKSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ ++ ++ + K P++GEK++++ A+ NA + Sbjct: 302 VPNEVLIPQDIDQEAVKALVDTKIVK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGHLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ ++ + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQRDG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L+ + +QR++ Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I+G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSHT 614 G+ + +A + + + Sbjct: 575 GVPRAVAEAVQRKLNPKEAEA 595 >gi|257784741|ref|YP_003179958.1| excinuclease ABC, C subunit [Atopobium parvulum DSM 20469] gi|257473248|gb|ACV51367.1| excinuclease ABC, C subunit [Atopobium parvulum DSM 20469] Length = 644 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 177/637 (27%), Positives = 303/637 (47%), Gaps = 49/637 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 +Q+P PG Y D +G+V+YVGKA NL+ R++ Y+ + +I M+ + + + Sbjct: 6 QVDQVPTDPGCYLWKDGSGKVIYVGKAKNLRARMRQYVTLQDDRAKIPLMMQVVRSFDYI 65 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V E EAL+LE N+I + +P FN+ +DDKS+PYI IT+ PA+ R+ Y Sbjct: 66 VVENEHEALVLERNLIAQYRPYFNVDFKDDKSYPYIAITESDTFPAIKYTREKHKKGTRY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFR---------------------HRTRPCL 160 FGP+ A +TI +L++ + S ++ + RPC Sbjct: 126 FGPYTDSYAARQTIETLRKVVPICSATCVEWKRAKRLLEKDPDGAAVANLLLAKKGRPCF 185 Query: 161 LFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAII 220 + + + G C G I + Y + V + + FL G + ++ M +A D+E A Sbjct: 186 DYHVGKGPGVCVGAIDTVSYAKNVRQVENFLRGNRSEIVSELKDQMQEAAADLDFEKAAR 245 Query: 221 HRDRLAALSHIQNHNDSIYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTD 277 + RL +LS + + + +D +Y + ++ G+ + F L Sbjct: 246 LKSRLRSLSDLDDRQQVTFPTSVNIDLIGIYREETISAACVFVVREGRTIRSVEFILDKG 305 Query: 278 SESTNAQILSYFLRQFYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGE 336 + + +++S FL+++Y + P + L + + +L ++ G+ + P++GE Sbjct: 306 LDVSEEELVSGFLKRYYDETADIPAEVNLPIDLLDAEVLSEWLTQKRGHNCVLHHPQRGE 365 Query: 337 KRKIIEQALINAHRSHTQKLST----EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMG 392 K ++++ A NA + + + + L AL P RIE +D S + G Sbjct: 366 KFRLLQMASANARHALMRHMIRTGYADDRTNQALLQLESALALDAPPLRIECFDISTLHG 425 Query: 393 CSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFH 452 V MVV K+QYR+F + + +D M VL RR+S Sbjct: 426 NFTVASMVVFTNGKADKSQYRRFKIRAE-LDEANDFVSMTEVLGRRYS-----------P 473 Query: 453 PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV 512 + + F S PD++++DGGK QL+AA L +L ++ I + +AK + E F Sbjct: 474 ERMADERFGSRPDLLVVDGGKPQLTAAINQLNELGLD--IPVCGLAKSDE-----EVFVP 526 Query: 513 KKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLL 571 +VL LY I+++RDE+HRFAIT HR+ R KA S LDEI G+GP RK+ + Sbjct: 527 WDDTPIVLPTGSASLYLIKQVRDESHRFAITFHRELRDKAMTVSILDEIPGVGPKRKKDI 586 Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ FG+ K + +S E ++ ++G+S +A IY Sbjct: 587 MRHFGSFKRLKAASVEDISQVKGVSVNLAETIYKELK 623 >gi|332366791|gb|EGJ44532.1| excinuclease ABC subunit C [Streptococcus sanguinis SK1059] Length = 611 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 172/620 (27%), Positives = 294/620 (47%), Gaps = 41/620 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK +P++NI+L+DDKS+P+I IT+ P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENQPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + + C + + +C ++ S+ + Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNPP----EKVCFYYHLGQCKAHTICQVDSQYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E E FL G + + E + M A ++E A +RD + ++ ++ + Sbjct: 182 ELAQEVAAFLKGQDDQIIEDLRGKMAGAAQAMEFEKAAEYRDLIQSIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P IL+ + +E ++ I K P++GEK++++ A+ NA + Sbjct: 302 KPNEILIPADIDEEAVRAIVDTKVLK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LERSIEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V++RR+S++I++ + PD++++DGG+G Sbjct: 414 YKIKT--VIGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F + + L+ + +QR++ Sbjct: 458 QVNVAKEVIQE-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDQIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSH 613 G+ + +A + + T Sbjct: 575 GVPRAVAEAVREKLNPKTQE 594 >gi|166362764|ref|YP_001655037.1| excinuclease ABC subunit C [Microcystis aeruginosa NIES-843] gi|189038065|sp|B0JFQ0|UVRC_MICAN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|166085137|dbj|BAF99844.1| excinuclease ABC subunit C [Microcystis aeruginosa NIES-843] Length = 625 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 203/618 (32%), Positives = 313/618 (50%), Gaps = 29/618 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVT 63 ++P PGVY + D G +LY+GK+ L+ R++SY + + RI M+ Q+ I F VT Sbjct: 23 EIPLEPGVYFLRDQNGEILYIGKSKKLRSRVRSYFRPSQPLSPRIALMVRQVTEIEFIVT 82 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQGSY 121 TE E+L LEAN+IK+ +P FN LL+DDK +PYI IT P ++ R + Y Sbjct: 83 DTEAESLALEANLIKQHQPHFNTLLKDDKKYPYICITWSETYPRIFITRKRRINNQKDRY 142 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GP+ + T++ ++RTF LR +F + RPCL + I RC G C IS + Y Sbjct: 143 YGPYVDTRLLRYTLHLIKRTFPLRQRPQPLF--KDRPCLNYDIGRCPGVCQKLISPQDYR 200 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 E + + G L EK+A M A+ D+E A RD++ L + Sbjct: 201 ETLQKVAMIFQGRTGELLEKLATKMLAASENLDFEQAATIRDQIRGLQALNTDQKVSLPD 260 Query: 242 ----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294 D +L ++ CIQ G+ G FF + S + +IL L + Y Sbjct: 261 DTVSRDAIALAKDEQHCCIQLFQVRSGRLVGRLGFFADSQS-ANEGEILQKVLEEHYLSV 319 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P ILL E E +L ++ G KV++TVP++ K ++ NA + Sbjct: 320 EGVEIPSEILLPCELPEGEVLAGWLREKKGRKVELTVPQRQSKADLLAMVEKNALYELEK 379 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + L+D LP +P RIE YD SHI G +AV VV + YR Sbjct: 380 TKRSADRDLQSLQDLAVILDLPALPHRIEGYDISHIQGSNAVASGVVFIDGVAANQHYRH 439 Query: 415 FNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472 + + +VK DD A + V+ RRF + +N +N+ +PD+V++DGG Sbjct: 440 YKIKNPEVKIGHSDDFASLAEVIRRRFRRYAENPDNIAESD--------DFPDLVMIDGG 491 Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532 KGQLSA VL ++N+ ++ ++S+AK + E F + L + P + ++R Sbjct: 492 KGQLSAVVAVLGEMNLLEQVKVVSLAKQRE-----EIFLPGESSPLETDKEQPGVQLLRR 546 Query: 533 LRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDEAHRFA++ HR++R +K+ S LDEI G+G R++ LL F ++ I +S E L Sbjct: 547 VRDEAHRFAVSFHRQQRMQKSRRSRLDEIPGLGFKRQKELLAHFHSLDYIREASLEQLQQ 606 Query: 592 IEGISKKIACKIYNHFHK 609 + GI +++A +IYN+FH Sbjct: 607 VTGIGEQLAKEIYNYFHP 624 >gi|324994563|gb|EGC26476.1| excinuclease ABC subunit C [Streptococcus sanguinis SK678] gi|327462543|gb|EGF08867.1| excinuclease ABC subunit C [Streptococcus sanguinis SK1] Length = 611 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 171/620 (27%), Positives = 293/620 (47%), Gaps = 41/620 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + + C + + +C ++ S+ + Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNPP----EKVCFYYHLGQCKAHTICQVDSQYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 + E FL G + + E + M A ++E A +RD + ++ ++ + Sbjct: 182 DLAQEVAAFLKGLDDRIIEDLRGKMAGAAQAMEFEKAAEYRDLIQSIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P IL+ + +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 KPNEILIPADIDEEAVRAMVDTKVLK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSIEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V++RR+S++I++ + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V++ + I I + K K E F + + L+ + +QR++ Sbjct: 458 QVNVAKEVIQD-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDQIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSH 613 G+ + +A + + T Sbjct: 575 GVPRAVAEAVREKLNPKTQE 594 >gi|323495673|ref|ZP_08100744.1| excinuclease ABC subunit C [Vibrio sinaloensis DSM 21326] gi|323319308|gb|EGA72248.1| excinuclease ABC subunit C [Vibrio sinaloensis DSM 21326] Length = 588 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 205/607 (33%), Positives = 316/607 (52%), Gaps = 31/607 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M + V+YVGKA +L+KR+ SY + + ++S I+ I TVT TE EAL+LE Sbjct: 1 MYNADAVVIYVGKAKDLKKRLSSYFRKKVDSEKTRALVSNIDKIDVTVTHTETEALILEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK+ P++N+LLRDDKS+PYI I+ HK P L HR + +G YFGP+ AV +T Sbjct: 61 NYIKQYLPKYNVLLRDDKSYPYIFIS-GHKHPRLSMHRGAKKRKGEYFGPYPDSGAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYMEFVHEAKKFLSG 193 ++ +Q+ F +R C D+V+ +RTRPCL++QI RC+ PC IS E+Y E V + FL G Sbjct: 120 LHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAAPCVSSVISDEQYAELVGLVRLFLQG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCF---SLYHN 250 + + E + M QA+ +E A RD++ A+ +Q + MD Sbjct: 180 KDQLVLETLVERMEQASKTLRFEEAAKFRDQIQAIRRVQEQQFVSEDSMDDMDVLGFAQE 239 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP----CPENILLS 306 +ACI G+ G+ + F K +++ ++ FL Q+Y P I+L+ Sbjct: 240 NGIACIHILMIRQGKILGSRSHFPKIPNDTNREEVFYSFLSQYYLSHNEARTIPTRIILN 299 Query: 307 E-EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365 EET L+ + G KV V G + + ++ + NA + T K++ +++ Sbjct: 300 SGLIEETEPLQQALASIAGRKVHFHVNPTGTRGRYLKLSNTNALTAITTKINHKMTISQR 359 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 K+ + + I R+E +D SH MG S + VV G VK +YR++N+ + Sbjct: 360 FKELREVLGMETIG-RMECFDISHTMGESTIASCVVFNHEGPVKQEYRRYNI--TGITGG 416 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD A M LERR+S+ + E+ PD+V +DGGKGQL+ A ++ + Sbjct: 417 DDYAAMGQALERRYSKQLDVEK---------------IPDIVFIDGGKGQLNRAHEIISQ 461 Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 + R +I IAKG R G+E GE L P L+ +Q +RDE+H AI Sbjct: 462 YWGDWPKRPRLIGIAKGVTRKPGLETLITTDGEEFNLPSDAPALHLMQHIRDESHNHAIA 521 Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR +R K S L+ I G+GP R++ LL+ G ++ + R+S E +A + GIS +A Sbjct: 522 GHRAKRGKTRRTSALEGIEGVGPKRRQALLKYMGGLQELKRASVEEIAKVPGISHSLAEN 581 Query: 603 IYNHFHK 609 IY + Sbjct: 582 IYQALKQ 588 >gi|299771807|ref|YP_003733833.1| excinuclease ABC subunit C [Acinetobacter sp. DR1] gi|298701895|gb|ADI92460.1| excinuclease ABC subunit C [Acinetobacter sp. DR1] Length = 584 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 198/606 (32%), Positives = 309/606 (50%), Gaps = 32/606 (5%) Query: 10 PGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEA 69 PGVY+ML G +LYVGKA NL+ R+ SY + ++++I +I VT +E EA Sbjct: 5 PGVYKMLGKEGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVARIYDIETLVTRSETEA 64 Query: 70 LLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFGPFASV 128 LLLE N+IK+ +P +NI+LRDDKS+ YI ++ P L R Q G +FGP+ S Sbjct: 65 LLLEQNLIKQHRPPYNIMLRDDKSYVYIFVSADKPYPRLASGRGKGKHQIGKFFGPYPSA 124 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 + T+ LQ+ F +R C +S F R RPCL +QIKRCS PC G IS E Y E ++ + Sbjct: 125 YSARDTLLVLQKLFNVRQCENSYFAQRKRPCLQYQIKRCSAPCVGLISPEDYKEDINNSI 184 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246 +FL G L +++ M QA + ++E A+ +RDRL+ L +Q D + Sbjct: 185 RFLQGDTKELNQELIAKMEQAAAELEFEKAVFYRDRLSLLREVQAQQAVFKVKGEADILA 244 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCPENIL 304 + + + C+Q + G+ G ++F Q+LS F+ FY P ++ Sbjct: 245 IAYQAGVTCVQIMYVRNGRMLGGKSYFPDM-LGDDLGQMLSDFMANFYFQVADEVPNELI 303 Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364 ++ + LE + +Q+G KV+I + + + +E A +N + +LS + Sbjct: 304 VNIALPDRKELEEALTQQFGKKVQIKSNVRETRAEWLELAEMNVQHAIKGQLSNHLELNE 363 Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424 + P IE +D SH MG + + VV + G K YR+F + + Sbjct: 364 RFHQLEQVIGRPVDR--IECFDISHTMGEAPIASCVVFDQGGARKRDYRQFAIQD--ITA 419 Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484 DD A MR L RR+ + I PD++++DGGKGQL A V++ Sbjct: 420 GDDYAAMRQALTRRYKKAI-------------------LPDLLLIDGGKGQLHMAMEVMQ 460 Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544 +L ++ ++ ++KG R G+E G + L L+ IQ++RDEAHRFAIT Sbjct: 461 ELGLDAF--MVGVSKGEGRKPGLETLHFTDGTKIQLPEDHKALHLIQQVRDEAHRFAITK 518 Query: 545 HRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 HR +R K S L+ I G+GP R+R LL FG ++ + ++S + L + G + +A I Sbjct: 519 HRAKRDKRRSISVLEAIPGLGPKRRRDLLTHFGGIQGVLKASEKELTLVPGFGEMMARTI 578 Query: 604 YNHFHK 609 Y H+ Sbjct: 579 YKILHE 584 >gi|149005728|ref|ZP_01829467.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP18-BS74] gi|307126816|ref|YP_003878847.1| excinuclease ABC, C subunit [Streptococcus pneumoniae 670-6B] gi|147762668|gb|EDK69628.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP18-BS74] gi|306483878|gb|ADM90747.1| excinuclease ABC, C subunit [Streptococcus pneumoniae 670-6B] gi|332077046|gb|EGI87508.1| excinuclease ABC, C subunit [Streptococcus pneumoniae GA17545] Length = 614 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 169/622 (27%), Positives = 291/622 (46%), Gaps = 41/622 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY +++T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHNT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G + + + + M A ++E A +RD + A+ ++ + Sbjct: 182 SMAQEVSDFLKGQDDKIIDDLKSKMAVAAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 VPNEVLIPQDIDEEAVKALVDSKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ + + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L+ + +QR++ Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I+G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSHTP 615 G+ + +A + + P Sbjct: 575 GVPRVVAEAVQRKLNPQGEALP 596 >gi|294793537|ref|ZP_06758674.1| excinuclease ABC subunit C [Veillonella sp. 3_1_44] gi|294455107|gb|EFG23479.1| excinuclease ABC subunit C [Veillonella sp. 3_1_44] Length = 608 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 189/615 (30%), Positives = 313/615 (50%), Gaps = 34/615 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRF 60 +P PGVY D R++YVGKA NL+ R++SY+ ++ + ++T M+ + ++ Sbjct: 9 KVSHLPTTPGVYLWRDQYNRIIYVGKAINLRNRVRSYVRNDANRAPKVTAMMKRAVDVEV 68 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE+EAL+LE +IK +P++NI LRDDK++PY+ I+ + P +Y R Sbjct: 69 IQTKTEMEALILENTLIKEHEPKYNIRLRDDKTYPYVKISVQEDYPRVYMTRRLERDGAK 128 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGPF V +V + +++ + LR+C RPCL + + C PC +IS Y Sbjct: 129 YFGPFTDVTSVHVVLKLIRQYYPLRTCKSMKVE---RPCLQYHMHYCEAPCFNKISVPDY 185 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 +++ E + G L ++I M A +E A +RD+L+++ IQ + Sbjct: 186 RKYIDEIIELFEGKPIPLLKEIKSKMEAAAEDLRFEDAARYRDQLSSIEKIQEKQRMVTQ 245 Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 +D L + ++AC+Q F G+ G +F++ D +S+ + + + + Sbjct: 246 RGDLDVLGLAVDTSMACVQLLFIRGGRLLGRENYFVQHDGDSSETIMTDFIKQYYGDTNF 305 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQ 354 P+ +LL E+ + LL F + G V ++VP++G K +I+ A NA Q Sbjct: 306 IPKELLLPMESTDRDLLTEWFTQLKGQHVDVSVPQRGYKMDMIKMAHENAETFLEERRRQ 365 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +K + LP +P+R+E +D SH G V MVV K +YR+ Sbjct: 366 WQHQIDKTGGAVKKLAEILDLPRLPERMECFDISHTQGTETVASMVVFEGGKPAKKEYRR 425 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F L DD M ++ERR+ + PD++I+DGGKG Sbjct: 426 FKLKTTQG-KPDDFKSMAEIMERRY----------------GNETDWPMPDLIIIDGGKG 468 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 QL+AA +++ + V + + +IS+AK + E F + E+++L+ P L +Q++R Sbjct: 469 QLNAALPLIRAVGVTD-VPVISLAKRIE-----EVFVEGQSESIILSHHTPELQLLQQIR 522 Query: 535 DEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DEAHRFAIT HRK R K+ S LD I GIGP R++ L F +++ + +S + LA++E Sbjct: 523 DEAHRFAITYHRKLRGKRNLESILDHIEGIGPKRRKALWAHFNSLEAMKEASIDELANVE 582 Query: 594 GISKKIACKIYNHFH 608 ++ K A +YN F Sbjct: 583 SMNYKTAETLYNFFR 597 >gi|168485730|ref|ZP_02710238.1| excinuclease ABC, C subunit [Streptococcus pneumoniae CDC1087-00] gi|225856316|ref|YP_002737827.1| excinuclease ABC subunit C [Streptococcus pneumoniae P1031] gi|254764949|sp|C1CJ89|UVRC_STRZP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|183571093|gb|EDT91621.1| excinuclease ABC, C subunit [Streptococcus pneumoniae CDC1087-00] gi|225725628|gb|ACO21480.1| excinuclease ABC, C subunit [Streptococcus pneumoniae P1031] Length = 614 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 169/622 (27%), Positives = 290/622 (46%), Gaps = 41/622 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G + + + + M A ++E A +RD + A+ ++ + Sbjct: 182 SMAQEVSDFLKGQDDKIIDDLKSKMAVAAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 VPNEVLIPQDIDEEAVKALVDSKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ + + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L+ + +QR++ Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I+G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMRHFKSLTKIKEASVDEIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSHTP 615 G+ + +A + + P Sbjct: 575 GVPRVVAEAVQRKLNPQGEALP 596 >gi|262370103|ref|ZP_06063430.1| excinuclease ABC subunit C [Acinetobacter johnsonii SH046] gi|262315142|gb|EEY96182.1| excinuclease ABC subunit C [Acinetobacter johnsonii SH046] Length = 599 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 197/611 (32%), Positives = 305/611 (49%), Gaps = 32/611 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 M PGVY+ML G +LYVGKA NL+ R+ SY + ++++I +I V Sbjct: 15 NMTTLPGVYRMLGKDGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVARIYDIETLVVR 74 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFG 123 +E EALLLE N+IK +P +NI+LRDDKS+ YI ++ P + R Q G +FG Sbjct: 75 SETEALLLEQNLIKLHRPPYNIMLRDDKSYVYIFVSADKPYPRIASGRGKGKHQVGKFFG 134 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ S T+ LQ+ F +R C +S F R RPCL +QIKRCS PC G IS E+Y Sbjct: 135 PYPSAYNARDTLLVLQKLFNVRQCENSYFSQRKRPCLQYQIKRCSAPCVGLISPEEYKND 194 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNR 241 V + +FL G L +++ M QA ++E A+ +RDR+A L +Q+ Sbjct: 195 VDNSIRFLQGDTKELNQELIAKMEQAAEALEFEKAVFYRDRMALLRDVQSQQAIYKLKGE 254 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPC 299 D ++ + + C+Q G+ G ++F Q+L+ F+ FY Sbjct: 255 ADILAIAYQAGVTCVQIMHVRNGKMLGGKSYFPDM-LGDDLGQMLADFIANFYFQVADEV 313 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P ++++ E + LE + +Q+ KV+I + + + +E A +N + +L+ Sbjct: 314 PSELIVNVELPDRKELEQALQQQFDKKVQIKHSVRETRAEWLELAQMNVQHAIKGQLANH 373 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + P IE +D SH MG V VV G K YR+F++ Sbjct: 374 FELNERFHQLEQVVGRPIDR--IECFDISHTMGEETVASCVVFDSGGIRKRDYRQFSIQD 431 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A MR L RR+ + + PD++++DGGKGQL A Sbjct: 432 --ITAGDDYAAMRQALTRRYKKAM-------------------LPDLLLIDGGKGQLHMA 470 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 V+++L +E ++ ++KG R G+E G + L L+ IQ++RDEAHR Sbjct: 471 MEVMQELGLEAF--MVGVSKGEGRKPGLETLHFTDGTKIQLPEDHKALHLIQQVRDEAHR 528 Query: 540 FAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAIT HR +R KK S L+ I G+GP R+R LL FG ++ + ++S + L + G+ + Sbjct: 529 FAITKHRAKRDKKRGSSILEVIPGLGPKRRRDLLTHFGGIQGVLKASEKDLTLVPGLGEV 588 Query: 599 IACKIYNHFHK 609 +A IY H+ Sbjct: 589 MARTIYKVLHE 599 >gi|262280735|ref|ZP_06058518.1| EsvL [Acinetobacter calcoaceticus RUH2202] gi|262257635|gb|EEY76370.1| EsvL [Acinetobacter calcoaceticus RUH2202] Length = 602 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 200/606 (33%), Positives = 312/606 (51%), Gaps = 32/606 (5%) Query: 10 PGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEA 69 PGVY+ML G +LYVGKA NL+ R+ SY + ++++I NI VT +E EA Sbjct: 23 PGVYKMLGKEGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVARIYNIETLVTRSETEA 82 Query: 70 LLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFGPFASV 128 LLLE N+IK+ +P +NI+LRDDKS+ YI ++ P L R Q G +FGP+ S Sbjct: 83 LLLEQNLIKQHRPPYNIMLRDDKSYVYIFVSSDKPYPRLASGRGKGKHQIGKFFGPYPSA 142 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 + T+ LQ+ F +R C +S F R RPCL +QIKRCS PC G IS E Y E V+ + Sbjct: 143 YSARDTLLVLQKLFNVRQCENSYFSQRKRPCLQYQIKRCSAPCVGLISPEDYKEDVNNSI 202 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246 +FL G L +++ M QA + ++E A+ +RDRL+ L +Q D + Sbjct: 203 RFLQGDTKELNQELIAKMEQAAAELEFEKAVFYRDRLSLLREVQAQQAVFKVKGEADILA 262 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCPENIL 304 + + + C+Q + G+ G ++F Q+LS F+ FY P ++ Sbjct: 263 IAYQAGVTCVQIMYVRNGRMLGGKSYFPDM-LGDDLGQMLSDFMANFYFQVADEVPNELI 321 Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364 ++ + LE + +Q+G KV+I + + + +E A +N + +LS + Sbjct: 322 VNIALPDRKELEEALAQQFGKKVQIKSSVRETRAEWLELAEMNVQHAIKGQLSNHLELNE 381 Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424 + P IE +D SH MG + + VV + G K YR+F + + Sbjct: 382 RFHQLEQVIGRPVDR--IECFDISHTMGEAPIASCVVFDQGGARKRDYRQFAIQD--ITG 437 Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484 DD A MR L RR+ + I PD++++DGGKGQL A V++ Sbjct: 438 GDDYAAMRQALTRRYKKAI-------------------LPDLLLIDGGKGQLHMAMDVMQ 478 Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544 +L ++ ++ ++KG R G+E G + L + L+ IQ++RDEAHRFAIT Sbjct: 479 ELGLDAF--MVGVSKGEGRKPGLETLHFTDGTKIQLPEDNKALHLIQQVRDEAHRFAITK 536 Query: 545 HRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 HR +R K+ + S L+ I G+GP R+R LL FG ++ + ++S + L + G + +A I Sbjct: 537 HRAKRDKRRSTSVLEAIPGLGPKRRRDLLTHFGGIQGVLKASEKELTLVPGFGEMMARTI 596 Query: 604 YNHFHK 609 Y H+ Sbjct: 597 YKILHE 602 >gi|261210629|ref|ZP_05924921.1| excinuclease ABC subunit C [Vibrio sp. RC341] gi|260840114|gb|EEX66694.1| excinuclease ABC subunit C [Vibrio sp. RC341] Length = 588 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 204/607 (33%), Positives = 319/607 (52%), Gaps = 31/607 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M + V+YVGKA +L+KR+ SY N + + ++S I I TVT TE EAL+LE Sbjct: 1 MYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTVTHTETEALILEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK+ P++N+LLRDDKS+PYI ++ HK P L HR + +G YFGP+ AV +T Sbjct: 61 NYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGTKKRRGEYFGPYPDSGAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193 ++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC IS + Y E VH + FL G Sbjct: 120 LHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQEIVHYLRLFLQG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHN 250 ++ + + M QA+ + +E A RD++ A+ +Q + +D Sbjct: 180 KDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDSLEDLDVLGFAQE 239 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLS 306 +ACI G+ G+ + F K S+++ ++ FL Q+Y + P I+L+ Sbjct: 240 NGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHSEARSIPARIILN 299 Query: 307 EEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365 EET L+ + + G KV V G + + ++ A NA + T K++ +++ Sbjct: 300 RGLTEETEALQTAISELAGRKVTFHVNPTGTRGRYLKLANTNALTAITTKINHKMTIGQR 359 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 K ++ + I R+E +D SH MG S + VV + G +K +YR++N+ + Sbjct: 360 FKALQEELGMDTIT-RMECFDISHTMGESTIASCVVFNQEGPLKQEYRRYNI--TGITGG 416 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD A M VLERR+S+ + PD++ +DGGKGQL+ A ++ Sbjct: 417 DDYAAMAQVLERRYSKQLD---------------SSKIPDIIFIDGGKGQLNRAYEIISS 461 Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 + II IAKG R G+E G+ L P L+ IQ +RDE+H AI Sbjct: 462 CWQDWPKYPRIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQHIRDESHNHAIA 521 Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR +R K S L+ I G+GP R++ LL+ G ++ + R+S E +A + GIS +A Sbjct: 522 GHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPGISHALAEI 581 Query: 603 IYNHFHK 609 IY + Sbjct: 582 IYQALKQ 588 >gi|75910493|ref|YP_324789.1| excinuclease ABC subunit C [Anabaena variabilis ATCC 29413] gi|119367626|sp|Q3M542|UVRC_ANAVT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|75704218|gb|ABA23894.1| Excinuclease ABC subunit C [Anabaena variabilis ATCC 29413] Length = 627 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 198/619 (31%), Positives = 307/619 (49%), Gaps = 29/619 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVT 63 ++P PGVY M D + R++Y+GK+ L+ R++SY N T RI M + I F VT Sbjct: 23 EIPPEPGVYFMRDGSDRIIYIGKSRKLRSRVRSYFREGYNKTERIATMAKLVTEIEFIVT 82 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQGSY 121 TE EAL LEAN+IK+ +P FN+LL+DDK +PY+ IT P ++ R + Y Sbjct: 83 DTEAEALALEANLIKQHQPYFNVLLKDDKKYPYVCITWSEDYPRIFITRKRQLGKEKDKY 142 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GP+ + + + +R F LR +F + RPCL + + RC G C IS E+Y Sbjct: 143 YGPYTDSGLLREILRISKRIFALRQRPQPLF--KDRPCLNYDLGRCPGVCQQLISPEEYR 200 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + V + G L + ++ M +A ++E A RD++A L + Sbjct: 201 KTVQKVAMVFQGRTQELIDILSEQMEKAAEALNFEVAARIRDQIAGLKSLTAEQKVSLPD 260 Query: 242 ----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-- 295 D +L + ACIQ GQ G F ++ +E IL L + Y Sbjct: 261 DTVSRDAIALAADAQHACIQLFQIRAGQLVGRLAFVAESHAE--PGAILQRVLEEHYQTA 318 Query: 296 -DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P IL+ E + +L ++ G KV I P++ K ++IE NA + Sbjct: 319 ESVEIPAEILVQHELPDAEILADVLTQRKGRKVTIFTPQRQVKAELIEMVERNAQYELQR 378 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + +D LP +P RIE YD SHI G +AV VV + K YR Sbjct: 379 MQKLGDRNHQATQDLAAILDLPDLPHRIEGYDISHIQGSNAVASQVVFIDGLPAKQNYRH 438 Query: 415 FNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472 + + V DD A + V++RRF + ++ P+ P WPD++++DGG Sbjct: 439 YKIKNPTVTIGHSDDFASLAEVIQRRFRKYAED-------PQLSRVGNPDWPDLIMIDGG 491 Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532 KGQLS+ VL+++N+ + +IS+AK + E F + + L + P + ++R Sbjct: 492 KGQLSSVVAVLQEMNLLEDLRVISLAKRRE-----EIFLPGESQPLKTDAEQPGVQLLRR 546 Query: 533 LRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 LRDEAHRFA++ HR++R K S LDEI G+G R++ LL F +V I +++P +A Sbjct: 547 LRDEAHRFAVSFHRQQRSDKLKRSRLDEIPGLGHHRQKQLLAHFRSVDYIRQATPAQIAE 606 Query: 592 IEGISKKIACKIYNHFHKN 610 + GI +A IY++FH + Sbjct: 607 VPGIGPHLAQAIYDYFHPS 625 >gi|253579751|ref|ZP_04857019.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848750|gb|EES76712.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 620 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 197/633 (31%), Positives = 321/633 (50%), Gaps = 38/633 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M ++YVGKA +L+ R++ Y S+ N +I M++ I + Sbjct: 7 ELKKLPGKPGVYIMHGEKDEIIYVGKAVSLKNRVRQYFQSSRNKGAKIEQMVTHITRFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE N+IK +P++N +L+DDKS+P+I +T + P + R + Sbjct: 67 IITDSELEALVLECNLIKEHRPKYNTMLKDDKSYPFIKVTVNEEYPRVLFARRMKKDKAK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV+ I +++ + +RSC + R + RPCL + +K+CS PC G +SSE Sbjct: 127 YFGPYTSAGAVKDVIELVRKLYKVRSCNRVLPRDCGKDRPCLYYHMKQCSAPCQGYVSSE 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + + E KFL+G + + + M A+ + +E A+ +RD + ++ I Sbjct: 187 EYKKNIAELLKFLNGDFKDTIDMLTDKMMAASEEMRFEDAMEYRDLIRSIQKIGERQKIT 246 Query: 239 YNRMDCFSLYH---------NKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYF 289 + + + A +Q F G+ G F+L+ T AQ+LS F Sbjct: 247 GYGEEDKDIIAVAMDESLDLREQDAVVQVFFVRGGKLIGREHFYLRVARGDTKAQVLSSF 306 Query: 290 LRQFYTDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA 348 ++QFY P P I+L +E E+ ++E + +V I VPK+G K K++E A NA Sbjct: 307 MKQFYAGTPFIPREIMLQKEIEDAKIIEEWLTDRRKQRVYIRVPKKGTKEKLVELAEENA 366 Query: 349 HRS----HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGE 404 + E + + + L I R+E YD S+I G +VG MVV + Sbjct: 367 KMVLDKDRERIKREEGRTIGAVHEVEEWLGLSGIR-RMEAYDISNISGFESVGSMVVYEK 425 Query: 405 NGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWP 464 ++ YRKF + V+ +D A M VL RRF+ K+E + SF P Sbjct: 426 GKPKRSDYRKFKIKW--VQGPNDYASMEEVLTRRFTHEGKDEFD----------SFSIMP 473 Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524 D++++DGG+GQ++ A VL+ L +E I + + K + ++ Sbjct: 474 DLILMDGGRGQVNIALKVLEILGIE--IPVCGMVKDDHHRTRG---LYYNNLEIPIDTDS 528 Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583 I R++DEAHRFAI HR R K +S LD+I GIG R++ L++ F +V+ I Sbjct: 529 EGFRLITRIQDEAHRFAIEFHRSLRSKEQVHSLLDDIPGIGETRRKALMRKFKSVENIRD 588 Query: 584 SSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616 +S + LA E ++ A K+Y FH + PT Sbjct: 589 ASLKELAETESMNAGSAQKVYEFFHG--ASVPT 619 >gi|307708320|ref|ZP_07644787.1| excinuclease ABC, C subunit [Streptococcus mitis NCTC 12261] gi|307615766|gb|EFN94972.1| excinuclease ABC, C subunit [Streptococcus mitis NCTC 12261] Length = 615 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 168/619 (27%), Positives = 290/619 (46%), Gaps = 41/619 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + + + C + I +C + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPPY----KVCFYYHIGQCMAHTICKKDESYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G + + + + M A ++E A +RD + A+ ++ + Sbjct: 182 SMAQEVSDFLKGQDDKIIDDLKGKMATAAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 VPNEVLIPQDIDEEAVKVLVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ ++ + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQRDG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L+ + +QR++ Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDEIVDV- 574 Query: 594 GISKKIACKIYNHFHKNTS 612 G+ + +A + + + Sbjct: 575 GVPRAVAEAVQRKLNPQEA 593 >gi|225854150|ref|YP_002735662.1| excinuclease ABC subunit C [Streptococcus pneumoniae JJA] gi|254764948|sp|C1CCZ1|UVRC_STRZJ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|225723356|gb|ACO19209.1| excinuclease ABC, C subunit [Streptococcus pneumoniae JJA] Length = 615 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 168/620 (27%), Positives = 292/620 (47%), Gaps = 41/620 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGSIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G ++ + +++ M A ++E A +RD + A+ ++ + Sbjct: 182 SMAQEVSDFLKGQDNKIIDELKGKMAAAAQTMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 VPNEVLIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGRPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ + + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L+ + +QR++ Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I+G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMRHFKSLTKIKEASVDEIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSH 613 G+ + +A + + + Sbjct: 575 GVPRAVAEAVQTKLNPQETE 594 >gi|168490496|ref|ZP_02714639.1| excinuclease ABC, C subunit [Streptococcus pneumoniae CDC0288-04] gi|183574918|gb|EDT95446.1| excinuclease ABC, C subunit [Streptococcus pneumoniae CDC0288-04] Length = 614 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 169/622 (27%), Positives = 292/622 (46%), Gaps = 41/622 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G ++ + +++ M A ++E A +RD + A+ ++ + Sbjct: 182 SMAQEVSDFLKGQDNKIIDELKGKMVAAAQTMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 VPNEVLIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ + + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L+ + +QR++ Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I+G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSHTP 615 G+ + +A + + P Sbjct: 575 GVPRVVAEAVQRKLNPQGEALP 596 >gi|37523161|ref|NP_926538.1| excinuclease ABC subunit C [Gloeobacter violaceus PCC 7421] gi|81708839|sp|Q7NFD4|UVRC_GLOVI RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|35214164|dbj|BAC91533.1| excinuclease ABC subunit C [Gloeobacter violaceus PCC 7421] Length = 628 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 193/618 (31%), Positives = 307/618 (49%), Gaps = 35/618 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVTC 64 +P GVY M D AG +LYVGKA NL+ R++SY + H+ RI M+ ++++ +T Sbjct: 18 LPTSAGVYLMRDEAGEILYVGKAKNLRNRVRSYFQPGHDHSPRIAIMVGKVHDFELILTD 77 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS--STIQGSYF 122 TE EAL+LE N+IK KPR+N+LL+DDK +PY+ IT + P ++ R + YF Sbjct: 78 TEAEALVLEDNLIKTHKPRYNVLLKDDKQYPYLCITWSEEYPRIFVTRRRGSGHPEDRYF 137 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ A+ T+ L++ F LR VF + RPC+ +++ RC G C IS ++Y Sbjct: 138 GPYTDAGALHSTLGLLKKLFPLRQRNTPVF--KDRPCINYEMGRCPGLCQRLISPQEYRA 195 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242 + + + L G L ++ M A ++E A RDR+ L+ + H Sbjct: 196 TIRQIQMILQGRTAELLAQLEDQMQTAAAAMNFEHAARLRDRITGLNQLGAHQKITVPDS 255 Query: 243 DCFS----LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY---T 295 L + L IQ G+ G F S IL L + Y Sbjct: 256 SVSRDAVALAADAALVSIQLFQVRSGKLIGRLGFS-AAASGEDPGHILQRVLEEHYRASA 314 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P +L E +L ++ G KV+I P++ K +++E NA + Sbjct: 315 SEEIPLEVLTQHPLPEADILATWLAEKKGRKVEIHAPQRQIKAELVEMVARNAEAELQRL 374 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 + L + + LP +P+R+E YD SHI G V VV + K YR + Sbjct: 375 ERFSRRQEKGLLNLAEALELPSVPRRMECYDISHIQGTDTVASRVVFVDGAPAKQYYRHY 434 Query: 416 NLHPNDVKT--QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 + + DD A M V+ RRF++ E PD+V++DGGK Sbjct: 435 KIRDPRIVAGRPDDFASMAEVISRRFARAESEPE-------------GDLPDLVVIDGGK 481 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 GQLSAA+ V+++L+ + I +AK + E F + + +++ DP L+ +QR+ Sbjct: 482 GQLSAARAVMEELS-YGDVPTIGLAKRLE-----EVFLPGRSDPVLIAQGDPALHLLQRI 535 Query: 534 RDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDEAHRFA++ HR++R K+ S LD+I GIGP ++++LL +F +V ++ ++S E +A Sbjct: 536 RDEAHRFAVSFHREQRGKRMTRSSLDDIPGIGPAKRKILLDTFRSVPVLEKASFEEIAKT 595 Query: 593 EGISKKIACKIYNHFHKN 610 GI ++A I+ +FH Sbjct: 596 PGIGSRLAQVIHTYFHGE 613 >gi|225860615|ref|YP_002742124.1| excinuclease ABC subunit C [Streptococcus pneumoniae Taiwan19F-14] gi|254764950|sp|C1CQA2|UVRC_STRZT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|225726710|gb|ACO22561.1| excinuclease ABC, C subunit [Streptococcus pneumoniae Taiwan19F-14] gi|327390352|gb|EGE88693.1| excinuclease ABC, C subunit [Streptococcus pneumoniae GA04375] Length = 614 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 169/622 (27%), Positives = 292/622 (46%), Gaps = 41/622 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G ++ + +++ M A ++E A +RD + A+ ++ + Sbjct: 182 SMAQEVSDFLKGQDNKIIDELKGKMAAAAQTMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 VPNEVLIPQDIDEEAVKALVDSKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ + + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L+ + +QR++ Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I+G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSHTP 615 G+ + +A + + P Sbjct: 575 GVPRVVAEAVQRKLNPQGEALP 596 >gi|149010764|ref|ZP_01832135.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP19-BS75] gi|303253942|ref|ZP_07340063.1| excinuclease ABC subunit C [Streptococcus pneumoniae BS455] gi|147765245|gb|EDK72174.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP19-BS75] gi|301801486|emb|CBW34178.1| UvrABC DNA repair system protein C [Streptococcus pneumoniae INV200] gi|302599118|gb|EFL66143.1| excinuclease ABC subunit C [Streptococcus pneumoniae BS455] Length = 614 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 169/622 (27%), Positives = 292/622 (46%), Gaps = 41/622 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDETYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G ++ + +++ M A ++E A +RD + A+ ++ + Sbjct: 182 SMAQEVSDFLKGQDNKIIDELKGKMAAAAQTMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 VPNEVLIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ + + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L+ + +QR++ Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I+G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSHTP 615 G+ + +A + + P Sbjct: 575 GVPRVVAEAVQRKLNPQGEALP 596 >gi|148998291|ref|ZP_01825760.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP11-BS70] gi|147755934|gb|EDK62978.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP11-BS70] Length = 615 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 167/620 (26%), Positives = 288/620 (46%), Gaps = 41/620 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIYKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT++H P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITNEH-YPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKNDEAYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G + + + + M ++E A +RD + A+ ++ + Sbjct: 182 SMAQEVSDFLKGQDDKIIDDLKSKMAVTAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 VPNEVLIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGRPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQHEA--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L+ + +QR++ Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I+G+GP RK+ L++ F ++ I + + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMRHFKSLTKIKEAGVDEIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSH 613 G+ + +A + + + Sbjct: 575 GVPRAVAEAVQRKLNPQETE 594 >gi|262282590|ref|ZP_06060358.1| excinuclease ABC subunit C [Streptococcus sp. 2_1_36FAA] gi|262261881|gb|EEY80579.1| excinuclease ABC subunit C [Streptococcus sp. 2_1_36FAA] Length = 609 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 172/615 (27%), Positives = 292/615 (47%), Gaps = 41/615 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + + C + + +C ++ S+ + Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNPP----EKVCFYYHLGQCKAHTICQVDSQYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E E FL G + + E + M A ++E A +RD + ++ ++ + Sbjct: 182 ELAQEVAAFLKGQDDQIIEDLRGKMAGAAQTMEFEKAAEYRDLIQSIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P IL+ + +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 KPNEILIPADIDEEAVRAMVDTKVLK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSIEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V++RR+S++I++ + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V++ + I I + K K E F + + L+ + +QR++ Sbjct: 458 QVNIAKEVIQD-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDQIVEV- 574 Query: 594 GISKKIACKIYNHFH 608 G+ + +A + H Sbjct: 575 GVPRAVAEAVLEKLH 589 >gi|327489784|gb|EGF21574.1| excinuclease ABC subunit C [Streptococcus sanguinis SK1058] Length = 611 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 169/620 (27%), Positives = 293/620 (47%), Gaps = 41/620 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK +P++NI+L+DDKS+P+I IT+ P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENQPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + + C + + +C ++ S + Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNP----SEKVCFYYHLGQCKAHTICQVDSRYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 + E FL G + + E + M A ++E A +RD + ++ ++ + Sbjct: 182 DLAQEVAAFLKGQDDQIIEDLRGKMAGAAQAMEFEKAAEYRDLIQSIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P IL+ + +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 KPNEILIPADIDEEAVRAMVDTKVLK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSIEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V++RR+S++I++ + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F + + L+ + +QR++ Sbjct: 458 QVNIAKEVIQE-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+ L++ F ++ I ++ + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEATVDQIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSH 613 G+ + +A + + T Sbjct: 575 GVPRAVAEAVREKLNPKTQE 594 >gi|327474399|gb|EGF19805.1| excinuclease ABC subunit C [Streptococcus sanguinis SK408] Length = 611 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 171/621 (27%), Positives = 294/621 (47%), Gaps = 41/621 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGSIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK +P++NI+L+DDKS+P+I IT+ P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENQPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + + C + + +C ++ S+ + Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNPP----EKVCFYYHLGQCKAHTICQVDSQYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E E FL G + + E + M A ++E A +RD + ++ ++ + Sbjct: 182 ELAQEVAAFLKGQDDQIIEDLRGKMAGAAQAMEFEKAAEYRDLIQSIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYADKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P IL+ + +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 KPNEILIPADIDEEAVRAMVDTKVLK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSIEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V++RR+S++I++ + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F + + L+ + +QR++ Sbjct: 458 QVNVAKEVIQE-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDQIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSHT 614 G+ + +A + + T Sbjct: 575 GVPRAVAEAVREKLNPKTQEQ 595 >gi|328946357|gb|EGG40499.1| excinuclease ABC subunit C [Streptococcus sanguinis SK1087] Length = 611 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 170/622 (27%), Positives = 293/622 (47%), Gaps = 41/622 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK +P++NI+L+DDKS+P+I IT+ P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENQPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + + C + + +C ++ S+ + Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNPP----EKVCFYYHLGQCKAHTICQVDSQYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E E FL G + + E + M A ++E A +R+ + ++ ++ + Sbjct: 182 ELAQEVAAFLKGQDDQIIEDLRGKMAGAAQTMEFEKAAEYRNLIQSIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P IL+ + +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 KPNEILIPADIDEEAVRAMVDTKVLK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSIEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V++RR+S++I++ + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F + L+ + +QR++ Sbjct: 458 QVNVAKEVIQE-QLGLDIPIAGLQKNDKHQT-HELLFGDPLRVVELSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDQIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSHTP 615 G+ + +A + + T Sbjct: 575 GVPRAVAESVQRKLNPKTQEQE 596 >gi|258645487|ref|ZP_05732956.1| excinuclease ABC subunit C [Dialister invisus DSM 15470] gi|260402839|gb|EEW96386.1| excinuclease ABC subunit C [Dialister invisus DSM 15470] Length = 625 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 190/623 (30%), Positives = 310/623 (49%), Gaps = 38/623 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 + +P+ PGVY+ D GRV+YVGKA NL+ R++SY+ N + ++ MI ++ Sbjct: 11 KVDALPDSPGVYRWKDKDGRVIYVGKAVNLKNRVRSYLREDKNRSPKVAAMIRHAADLDI 70 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQG 119 T+T TE+EAL+LE N+IK L P++NI LRDDKS+PY+ IT K P + R+ Sbjct: 71 TMTATEMEALILECNLIKELHPKYNISLRDDKSYPYVKITVNEKWPRILVTRNIRRDDGA 130 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 YFGPF V ++ KT++ ++R + +R+C +RPCL + + C PC + E+ Sbjct: 131 KYFGPFTDVGSLRKTLSLIRRLYPIRTCRSM---KVSRPCLQYHMNLCCAPCWNHCTEEQ 187 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y E+V + G N L + + ++M A+ + ++E A + RD+L A+ +Q + + Sbjct: 188 YHEYVVKTCDLFEGKNTELVKALQKDMESASEEMNFERAAVLRDQLHAVQSVQQRQNIVS 247 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D + A ++ + +G+ G + T+ I++ F++ FY Sbjct: 248 KEGDFDVVGMSRLDEHAGLEIFYIRYGKMVGKENLSIPDSLHETDEDIIAAFIKNFYGAN 307 Query: 298 P--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRS 351 P P+ I+L +E+ LL K VKI VP++G KR++ + A NA Sbjct: 308 PSSVPKEIILPILPQESLLLTAWLSKLRNGDVKIYVPERGFKRRLKDMAQSNAAKYLADK 367 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 Q + Q + + LP +P+RIE +D SH G G MVV K + Sbjct: 368 KLQWEYQDAREQGAVNKLKELLHLPKLPERIECFDISHNQGAETTGSMVVFESGRPNKKE 427 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YR+F L DD M V+ RR+ + PD+++LDG Sbjct: 428 YRRFKLQSTQGTP-DDFKSMAEVMARRY----------------GIETKWPRPDLIVLDG 470 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GKGQL AA V++ ++ +I +AK + E + + + ++++ +P L +Q Sbjct: 471 GKGQLDAALPVIRSCGIDT--PVIGLAKRME-----EIYVEGQTDPIIIDPHEPALQLLQ 523 Query: 532 RLRDEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDEAHRF IT HRK K+ S LD I GIGP R+ L +F ++ + ++ E L Sbjct: 524 FIRDEAHRFVITYHRKWTTKRNTESILDHIAGIGPQRRNALWHAFRSLDEMRNATVEELT 583 Query: 591 SIEGISKKIACKIYNHFHKNTSH 613 ++G++K A ++ F Sbjct: 584 RVKGMNKTAAENVFRFFRMKKDE 606 >gi|157149911|ref|YP_001450129.1| excinuclease ABC subunit C [Streptococcus gordonii str. Challis substr. CH1] gi|189038123|sp|A8AWG9|UVRC_STRGC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|157074705|gb|ABV09388.1| excinuclease ABC, C subunit [Streptococcus gordonii str. Challis substr. CH1] Length = 611 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 171/621 (27%), Positives = 294/621 (47%), Gaps = 41/621 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + + C + + +C ++ S+ + Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNPP----EKVCFYYHLGQCKAHTICQVDSQYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 + E FL G + + E + M A ++E A +RD + ++ ++ + Sbjct: 182 DLAQEVAAFLKGQDDQIIEDLRGKMAGAAQTMEFEKAAEYRDLIQSIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P IL+ + +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 KPNEILIPADIDEEAVRAMVDTKVLK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSIEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V++RR+S++I++ + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F + + L+ + +QR++ Sbjct: 458 QVNVAKEVIQE-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSHT 614 G+ + +A + + T Sbjct: 575 GVPRAVAEAVQEKLNLKTQEQ 595 >gi|50083605|ref|YP_045115.1| excinuclease ABC subunit C [Acinetobacter sp. ADP1] gi|81393877|sp|Q6FF64|UVRC_ACIAD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|49529581|emb|CAG67293.1| excinuclease ABC subunit C; UvrC with UvrAB is a DNA excision repair enzyme [Acinetobacter sp. ADP1] Length = 599 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 191/610 (31%), Positives = 304/610 (49%), Gaps = 30/610 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 M + PGVY+ML G +LYVGKA NL+ R+ SY + ++++I++I VT Sbjct: 15 NMTQLPGVYRMLGKDGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVARIHDIETLVTR 74 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFG 123 +E EALLLE N+IK+ +P +NI+LRDDKS+ YI ++ P + R Q G +FG Sbjct: 75 SETEALLLEQNLIKQHRPPYNIMLRDDKSYVYIFVSSDKPYPRIASGRGKGKHQIGKFFG 134 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ S + T+ LQ+ F +R C +S F R RPCL +QIKRCS PC G IS E Y + Sbjct: 135 PYPSAYSARDTLLVLQKLFNVRQCENSYFAQRKRPCLQYQIKRCSAPCVGLISPEDYKQD 194 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNR 241 V + +FL G L +++ M +A + +E A+ +RDRL L +Q Sbjct: 195 VDNSIRFLQGDTKELNQELIAKMEEAAEQLAFEKAMFYRDRLGLLREVQAQQAVFKIKGE 254 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DKPCP 300 D ++ + C+Q + G+ G ++F S+ + + ++ P Sbjct: 255 ADILAIAFQAGVTCVQIMYVRNGRMLGGKSYFPDMLSDDLGQMLSDFIANFYFQVADEVP 314 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 ++++ E + LE + Q+ K++I + + + E A++N + +LS + Sbjct: 315 SELIVNVELPDRKELEQALQTQFDKKIQIKHKVRETRAEWQELAIMNVQHAIKGQLSNHL 374 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 + P IE +D SH MG + + VV + G K YR+F + Sbjct: 375 ELNERFHQLEQVVGRPVDR--IECFDISHTMGEATIASCVVFDQGGARKRDYRQFGIED- 431 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 + DD A MR L RR+ + I PD++++DGGKGQL A Sbjct: 432 -ITAGDDYAAMRQALTRRYKKHI-------------------VPDLLLIDGGKGQLHMAM 471 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 V++ L ++ ++ ++KG R G+E G + L L+ IQ++RDEAHRF Sbjct: 472 EVMQTLGLDAF--MVGVSKGEGRKPGLETLHFTDGSKIQLPEDHKALHLIQQVRDEAHRF 529 Query: 541 AITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AIT HR +R K S L+ I G+GP R+R LL FG ++ + ++S + L + G+ + Sbjct: 530 AITKHRAKRDKRRAGSVLEVIPGLGPKRRRDLLTHFGGIQGVLKASEKELMLVSGLGPSM 589 Query: 600 ACKIYNHFHK 609 A IY H+ Sbjct: 590 ARTIYKILHE 599 >gi|332712025|ref|ZP_08431955.1| excinuclease ABC subunit C [Lyngbya majuscula 3L] gi|332349353|gb|EGJ28963.1| excinuclease ABC subunit C [Lyngbya majuscula 3L] Length = 654 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 191/628 (30%), Positives = 307/628 (48%), Gaps = 28/628 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFT 61 +++P PGVY M D + +LY+GK+ L+ R++SY + + RI M+ Q+ +I F Sbjct: 34 LKEIPLEPGVYLMRDHSASILYIGKSRKLRTRVRSYFRDSQPLSPRIAMMVGQVTDIEFI 93 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQG 119 VT TE EAL LEAN+IK+ +P +N+LL+DDK +PY+ IT P ++ R Q Sbjct: 94 VTDTEAEALALEANLIKQHQPYYNVLLKDDKKYPYVAITWSEDYPRIFITRKRRMGNKQD 153 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 Y+GP+ + + T++ +++ F +R +F + RPCL + + RC G C I+ E+ Sbjct: 154 KYYGPYVDLKLLRNTLSLVKQIFPIRQRPRPLF--KDRPCLNYDLGRCPGVCQKLITPEE 211 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + + + G L E + NM QA ++E A RD++ L+ + Sbjct: 212 YRKTIQKIAMVFQGRTGELIEMLTANMEQAAESLNFELAARIRDQITGLNSLSTDQKVAL 271 Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFF----LKTDSESTNAQILSYFLR 291 D +L + ACIQ G G FF + + IL L Sbjct: 272 PDDTVSRDAIALAADAKHACIQLFQIRGGHLVGRLGFFADVAPQGNGGIELGAILQRVLE 331 Query: 292 QFYTDKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA 348 + Y P IL+ + +L + G V I P++ K ++IE NA Sbjct: 332 EHYQTADAVEIPTEILVQHPLPDGEMLADYLSRSKGRNVTILTPQRQTKAELIEMVKRNA 391 Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 + + + ++D LP +P+RIE YD SHI G +AV VV + Sbjct: 392 NYELERTQRLVDRNTKAMEDLANILDLPDLPRRIEGYDISHIQGSNAVASQVVFLDGTPA 451 Query: 409 KNQYRKFNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFP----S 462 K YR + + ++ DD A + V+ RRF + E + Sbjct: 452 KQHYRHYKIKNPNITVGHSDDFASLAEVIRRRFRKSQLEPEPADSISSTINNQQSTIRKD 511 Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522 WPD+V++DGGKGQLSA VL++LN++ + ++S+AK + E F + L + Sbjct: 512 WPDLVMIDGGKGQLSAVVAVLQELNLQEEVPVVSLAKQYE-----ELFLPGEPLPLPTDP 566 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMI 581 P + ++R+RDEAHRFA+ HRK+R + S LDEI G+G R++ LL F ++ I Sbjct: 567 EQPGVQLLRRVRDEAHRFAVNFHRKQRSTQLHRSRLDEIPGLGFQRQKQLLAHFNSIDYI 626 Query: 582 SRSSPETLASIEGISKKIACKIYNHFHK 609 +S + LA + GI +++ +IY++FH Sbjct: 627 RNASVKQLAEVPGIGLRLSKEIYHYFHP 654 >gi|291546954|emb|CBL20062.1| excinuclease ABC, C subunit [Ruminococcus sp. SR1/5] Length = 615 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 197/627 (31%), Positives = 321/627 (51%), Gaps = 36/627 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M ++YVGKA +L+ R++ Y S+ N +I M++ I + Sbjct: 7 ELKKLPAKPGVYIMHGEKDEIIYVGKAISLKNRVRQYFQSSRNKGAKIERMVTHITRFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE N+IK +P++N +L+DDKS+P+I +T P + R + Sbjct: 67 IITDSELEALVLECNLIKEHRPKYNTMLKDDKSYPFIKVTVHEPYPRVLFARRMKKDKAK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV+ I +++ + +RSC S+ R + RPCL + +K+C PC G +S E Sbjct: 127 YFGPYTSGGAVKDVIELVRKLYQVRSCNRSLPRDTGKDRPCLYYHMKQCKAPCQGYVSQE 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + +++ KFL+G + ++ M +A+ + YE A+ +RD ++++ I Sbjct: 187 EYRKNINKVIKFLNGDFQDAISELMEKMQKASEEMRYEDAMEYRDLISSIRKIGERQKIT 246 Query: 239 -YNRMDCFSLYH--------NKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYF 289 Y + D + A +Q F G+ G F+L+ T AQ+LS F Sbjct: 247 GYGQEDRDIIAVAMDDSEDLRDQDAVVQVFFIRDGRLIGRDHFYLRVAKGDTKAQVLSSF 306 Query: 290 LRQFYTDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA 348 L+QFY P P I+L E E+ ++E + KV I VPK+G K K++E AL NA Sbjct: 307 LKQFYAGTPFIPSEIMLQSEIEDADIIEEWLSGRRKQKVHIRVPKKGTKEKLVELALENA 366 Query: 349 HRS----HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGE 404 + E + + + L ++ R+E YD S+I G +VG MVV + Sbjct: 367 RMVLAKDRERIRREEGRTIGAVHEVEEWLGLKNVV-RMEAYDISNISGFESVGSMVVYEK 425 Query: 405 NGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWP 464 ++ YRKF + V+ +D A M VL RRF+ + SF P Sbjct: 426 GRPKRSDYRKFKIKW--VQGPNDYASMEEVLTRRFTH----------ESNGEFDSFARLP 473 Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524 D++++DGG+GQ++ A VL +L + I + + K F + ++ Sbjct: 474 DLILMDGGRGQVNIALKVLNELGIS--IPVCGMVKDDHHRTRGLYF---NNVEIPIDTSG 528 Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583 I R++DEAHRFAI HR R + +S LD+I GIG R++ LL+ F +V+ I Sbjct: 529 EGFRLITRIQDEAHRFAIEYHRSLRSREQVHSILDDIPGIGDTRRKALLRKFKSVENIRD 588 Query: 584 SSPETLASIEGISKKIACKIYNHFHKN 610 +S E LA E ++ + A ++Y FHK+ Sbjct: 589 ASEEELAQTESMNARSARQVYEFFHKS 615 >gi|332362178|gb|EGJ39980.1| excinuclease ABC subunit C [Streptococcus sanguinis SK49] Length = 594 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 170/620 (27%), Positives = 293/620 (47%), Gaps = 41/620 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK +P++NI+L+DDKS+P+I IT+ P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENQPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + + C + + +C ++ S+ + Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNPP----EKVCFYYHLGQCKAHTICKVDSQYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 + E FL G + + E + M A ++E A +RD + ++ ++ + Sbjct: 182 DLAQEVAAFLKGQDDQIIEDLRGKMAGAAQAMEFEKAAEYRDLIQSIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P IL+ + +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 KPNEILIPADIDEEAVRAMVDTKVLK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSIEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V++RR+S++I++ + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V++ + I I + K K E F + + L+ + +QR++ Sbjct: 458 QVNVAKEVIQD-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDQIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSH 613 G+ + +A + + T Sbjct: 575 GVPRAVAEAVREKLNPKTQE 594 >gi|328955845|ref|YP_004373178.1| Excinuclease ABC subunit C [Coriobacterium glomerans PW2] gi|328456169|gb|AEB07363.1| Excinuclease ABC subunit C [Coriobacterium glomerans PW2] Length = 676 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 180/637 (28%), Positives = 312/637 (48%), Gaps = 49/637 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 ++P PG Y + AG V+YVGKA NL+ R++ Y+ + +I M+ + + Sbjct: 6 QVSRVPALPGCYLWKNAAGEVIYVGKAKNLRTRMRQYVTLADDREKIPLMMQVVRGFDYI 65 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V +E EAL+LE N+I++ +P +N+ +DDKS+P+I +T+ PA+ R+ Y Sbjct: 66 VVDSEHEALVLERNLIRQYRPYYNVDFKDDKSYPFIAVTESDLFPAIKYTRERHRAGTRY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRH---------------------RTRPCL 160 FGP+ A +TI++L++ + S + +R RPC Sbjct: 126 FGPYTDSRAARETIDTLRKVIPVCSAGCAEWRRVRRMIEAHRGDEDIVSLVCATGGRPCF 185 Query: 161 LFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAII 220 + + R G C G I+ E+Y + ++FL+G ++ ++ MN+A D+E A Sbjct: 186 DYHVGRGPGVCVGAIAPEQYARSIRAVERFLTGQRRDVVNELVSEMNEAAEALDFERAGR 245 Query: 221 HRDRLAALSHIQNHNDSIYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTD 277 + RL +S + + + +D Y + +A G+ + F L Sbjct: 246 IKRRLQMISDLDDRQQVEFPTSVDIDLVGFYREETIAGACVFIVREGRTIRSVEFILDKG 305 Query: 278 SESTNAQILSYFLRQFYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGE 336 + +++S F++++Y + P + ++ + + LL ++ G ++ P++GE Sbjct: 306 LDVEADELVSGFIKRYYDETADVPAEVDVAIDLADAELLGEWLTEKRGRVCRLHRPQRGE 365 Query: 337 KRKIIEQALINAHRSHTQKLST----EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMG 392 K +++E NA + + + + L ALP P RIE +D S I G Sbjct: 366 KHRLLETCERNARHALMRYMMRTGYADDRTNQALLQLESALALPAPPMRIECFDISTIHG 425 Query: 393 CSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFH 452 C V MVV K+QYR+F + + + +D A M VL RR++ + +E Sbjct: 426 CFTVASMVVFTAGHADKSQYRRFRIRTSTGEA-NDFASMLEVLGRRYAPVRMADE----- 479 Query: 453 PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV 512 F S PD++++DGGK QL+AA L +L ++ I + +AK + E F Sbjct: 480 ------RFGSRPDLLVVDGGKPQLTAAMTQLAELGLD--IPVCGLAKADE-----ELFVP 526 Query: 513 KKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLL 571 +VL LY I+++RDEAHRFAIT HR+ R K S LDEI G+GP+RKR + Sbjct: 527 WDDTPVVLPSGSASLYLIKQVRDEAHRFAITFHRQLRDKAMTASVLDEIEGVGPVRKRAV 586 Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ FG++K + ++S E +A ++GI + +A +I+ Sbjct: 587 MRHFGSMKRLRQASAEQIAEVKGIPRAVAQEIFYMLR 623 >gi|269797773|ref|YP_003311673.1| excinuclease ABC, C subunit [Veillonella parvula DSM 2008] gi|282849047|ref|ZP_06258436.1| excinuclease ABC, C subunit [Veillonella parvula ATCC 17745] gi|269094402|gb|ACZ24393.1| excinuclease ABC, C subunit [Veillonella parvula DSM 2008] gi|282581322|gb|EFB86716.1| excinuclease ABC, C subunit [Veillonella parvula ATCC 17745] Length = 608 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 189/615 (30%), Positives = 313/615 (50%), Gaps = 34/615 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRF 60 +P PGVY D R++YVGKA NL+ R++SY+ ++ + ++T M+ + ++ Sbjct: 9 KVSHLPTTPGVYLWRDQYNRIIYVGKAINLRNRVRSYVRNDANRAPKVTAMMKRAVDVEV 68 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE+EAL+LE +IK +P++NI LRDDK++PY+ I+ + P +Y R Sbjct: 69 IQTKTEMEALILENTLIKEHEPKYNIRLRDDKTYPYVKISVQEDYPRVYMTRRLERDGAK 128 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGPF V +V + +++ + LR+C RPCL + + C PC +IS Y Sbjct: 129 YFGPFTDVTSVHVVLKLIRQYYPLRTCKSMKVE---RPCLQYHMHYCEAPCFNKISVPDY 185 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 +++ E + G L ++I M A +E A +RD+L+++ IQ + Sbjct: 186 RKYIDEIIELFEGKPIPLLKEIKSKMEAAAEDLRFEDAARYRDQLSSIEKIQEKQRMVTQ 245 Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 +D L + ++AC+Q F G+ G +F++ D +S+ + + + + Sbjct: 246 RGDLDVLGLAVDTSMACVQLLFIRGGRLLGRENYFVQHDGDSSETIMTDFIKQYYGDTNF 305 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQ 354 P+ +LL E+ + LL F + G V ++VP++G K +I+ A NA Q Sbjct: 306 IPKELLLPMESTDRDLLTEWFTQLKGQHVDVSVPQRGYKMDMIKMAHENAETFLEERRRQ 365 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +K + LP +P+R+E +D SH G V MVV K +YR+ Sbjct: 366 WQHQIDKTGGAVKKLAEILDLPRLPERMECFDISHTQGAETVASMVVFEGGKPAKKEYRR 425 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F L DD M ++ERR+ + PD++I+DGGKG Sbjct: 426 FKLKTTQG-KPDDFKSMAEIMERRY----------------GNETDWPMPDLIIIDGGKG 468 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 QL+AA +++ + V + + +IS+AK + E F + E+++L+ P L +Q++R Sbjct: 469 QLNAALPLIRAVGVTD-VPVISLAKRIE-----EVFVEGQSESIILSHHTPELQLLQQIR 522 Query: 535 DEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DEAHRFAIT HRK R K+ S LD I GIGP R++ L F +++ + +S + LA++E Sbjct: 523 DEAHRFAITYHRKLRGKRNLESILDHIEGIGPKRRKALWAHFNSLEAMKEASIDELANVE 582 Query: 594 GISKKIACKIYNHFH 608 ++ K A +YN F Sbjct: 583 SMNYKTAETLYNFFR 597 >gi|301793807|emb|CBW36199.1| UvrABC DNA repair system protein C [Streptococcus pneumoniae INV104] gi|332204639|gb|EGJ18704.1| excinuclease ABC, C subunit [Streptococcus pneumoniae GA47901] Length = 615 Score = 498 bits (1283), Expect = e-138, Method: Composition-based stats. Identities = 168/620 (27%), Positives = 288/620 (46%), Gaps = 41/620 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY H + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRG-IHDTKTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G + + + + M A ++E A +RD + A+ ++ + Sbjct: 182 SMAQEVSDFLKGQDDKIIDDLKSKMAVAAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 VPNEVLIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGRPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ + + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L+ + +QR++ Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I+G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMRHFKSLTKIKEASVDEIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSH 613 G+ + +A + + + Sbjct: 575 GVPRAVAEAVQRKLNPQETE 594 >gi|148992275|ref|ZP_01821998.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP9-BS68] gi|168488302|ref|ZP_02712501.1| excinuclease ABC, C subunit [Streptococcus pneumoniae SP195] gi|147928901|gb|EDK79913.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP9-BS68] gi|183573193|gb|EDT93721.1| excinuclease ABC, C subunit [Streptococcus pneumoniae SP195] gi|332074422|gb|EGI84898.1| excinuclease ABC, C subunit [Streptococcus pneumoniae GA17570] Length = 614 Score = 498 bits (1283), Expect = e-138, Method: Composition-based stats. Identities = 169/622 (27%), Positives = 291/622 (46%), Gaps = 41/622 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPSIKITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDETYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G ++ + +++ M A ++E A +RD + A+ ++ + Sbjct: 182 SMAQEVSDFLKGQDNKIIDELKGKMAAAAQTMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 VPNEVLIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ + + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L+ + +QR++ Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I+G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMRHFKSLTKIKEASVDEIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSHTP 615 G+ + +A + + P Sbjct: 575 GVPRAVAEAVQRKLNPQGEALP 596 >gi|306836167|ref|ZP_07469152.1| excision endonuclease subunit UvrC [Corynebacterium accolens ATCC 49726] gi|304567950|gb|EFM43530.1| excision endonuclease subunit UvrC [Corynebacterium accolens ATCC 49726] Length = 689 Score = 498 bits (1283), Expect = e-138, Method: Composition-based stats. Identities = 183/680 (26%), Positives = 308/680 (45%), Gaps = 82/680 (12%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D RV+YVGKA NL+ R+ +Y R M+ +++ +TV Sbjct: 13 TIPTEPGVYKFRDENKRVIYVGKAKNLRARLSNYFQDITQLHPRTRQMVLTASSVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +EVEAL LE IKR P FN++ RDDK++P + ++ +P + +R YFG Sbjct: 73 ASEVEALQLEYTWIKRFDPHFNVMYRDDKTYPMLAVSVGEVVPRAFFYRGPRRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ AV ++++ L R F +R+C+ V+ RPCLL I +C PC G +S E++ Sbjct: 133 PYSHAWAVRESLDLLTRVFPMRTCSKGVYNRHERLGRPCLLGYIGKCDAPCIGRVSKEEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 E V+E F++G ++ K+ ++M A ++E A RD L A+ I ++ Sbjct: 193 RETVNELVSFMNGNTAGVRRKLVKDMEAAAENLEFERAARLRDDLGAIDKIMEQQAVVFA 252 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ------------- 284 D + ++ A +Q G+ RG + ++ + ++ Sbjct: 253 DGTDADLIAFNSDELEAAVQIFHVRGGRIRGQRGWVVERAGDQATSEPIEEGQPDPALPA 312 Query: 285 ILSYFLRQFYTD-----------------------------------KPCPENILLSEEA 309 ++ FL QFY+D P IL+ Sbjct: 313 LVQNFLIQFYSDAVEREEQEAREDAALAADVPRRGVDQESHMEQRHVHVIPREILVQAMP 372 Query: 310 EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE----ISHQMI 365 EE+ + G +V + VP++G+KR +++ NA Q + Sbjct: 373 EESEQVVSLLEDLRGARVDLRVPQRGDKRSLMDTVEKNAKEQLRQHKLKRVGDLTARSAA 432 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 L+D + P RIE D SHI G V +VV + K+ YR++ + Sbjct: 433 LQDIQDALGMDQAPLRIECTDISHIQGTDVVASLVVFEDGIPKKSDYRRYRIKEAAGDGH 492 Query: 426 -DDCAMMRMVLERRFSQLIKN---------------EENLNFHPKKQEYSFPSWPDVVIL 469 +D + + RRF + ++ EE + + F P + I+ Sbjct: 493 SNDVGSIAEITRRRFKRHNQDKLANPDEEKEESSFAEEKVAEESAEAGRRFAYPPQLFIV 552 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGG Q++AAQ V +L + + +T++ +AK + E + E ++L L+ Sbjct: 553 DGGAPQVAAAQEVFDELGIVD-VTLVGLAKRLE-----EIWVPGDNEPVILPRNSQALFL 606 Query: 530 IQRLRDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 +Q++RDEAHRFAIT HR++R K S LD I G+GP R+ L++ FG+VK + +S + Sbjct: 607 LQQIRDEAHRFAITYHRQQRSKRMRSSALDAIPGLGPQRRTDLVKHFGSVKKLKAASVDE 666 Query: 589 LASIEGISKKIACKIYNHFH 608 + + G K+A +Y+ H Sbjct: 667 ICEVNGFGPKLAQTVYDKLH 686 >gi|118443548|ref|YP_877364.1| excinuclease ABC subunit C [Clostridium novyi NT] gi|189038040|sp|A0PYB2|UVRC_CLONN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|118134004|gb|ABK61048.1| excinuclease ABC, C subunit [Clostridium novyi NT] Length = 621 Score = 498 bits (1283), Expect = e-138, Method: Composition-based stats. Identities = 197/620 (31%), Positives = 322/620 (51%), Gaps = 19/620 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 + +PE PGVY M + G V+YVGKA L+ R++ Y S NH ++ M+ I + Sbjct: 7 QLKIIPEKPGVYLMKNSLGEVIYVGKAKVLKNRVRQYFQNSKNHGSKVRAMVKNIAEFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE N+IK+ +PR+NILL+DDK +P++ IT P ++ R + Sbjct: 67 IITDSEMEALILECNLIKKYRPRYNILLKDDKHYPFLKITTNEDFPRIFVTRVRAKDGAR 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178 Y GP+ AV +TI +++ F LR+C ++ + +PCL + IK C+ PC G IS E Sbjct: 127 YLGPYPETSAVYETIELIKKIFPLRTCRLNIKENGEPVKPCLNYHIKLCTAPCAGYISRE 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 +Y + + + L+G ++ + + M +A+ + +E A RD+L A+ I+ Sbjct: 187 EYGKTIKKIIDLLNGKDNEVINDLKIKMEKASSELKFEEAASFRDKLLAVEKIRERQKII 246 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D ++Y + C Q F G+ G F L NA I+S F++ FY Sbjct: 247 SSNFENEDFINMYSEEIDLCAQIFFVRDGKIMGREHFILDRSIFGNNADIISNFIKDFYG 306 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351 + E + LLE + G KV I +P++GEK+KI++ NA + Sbjct: 307 GTAFIPKTIYVPEVMDIELLENWLSSKKGSKVSIKIPQKGEKKKILDLVESNAKNTLEQF 366 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 + + + LK+ L IP RIE YD S+I G +VG M+V + + Sbjct: 367 KLKLKVDKELYSNTLKELQNILELEEIPNRIEAYDISNIQGVDSVGSMIVFDKGKPKNSD 426 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILD 470 YR+F + VK +D MR +L RRF+ ++ +E + F +PD++++D Sbjct: 427 YRRFKIKT--VKGANDYDSMREILTRRFTHGLEEIKEIQKRNLLLSGAKFSVFPDLILMD 484 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ++ A VL+KLN+ I + + K K V + + + + I+ FI Sbjct: 485 GGKGQVNIALEVLEKLNI--NIPVCGMVKDDKHKTRG---LVYNNKEINIKSNNKIMQFI 539 Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DE HRFAIT HR R ++ +S L++I IG R++ LLQ FG+V+ I ++S + L Sbjct: 540 TRVQDEVHRFAITYHRSLRNRRVLHSVLEDIPNIGEKRRKELLQKFGSVENIKKASYDEL 599 Query: 590 ASIEGISKKIACKIYNHFHK 609 I++K A I ++F+ Sbjct: 600 LDTNSINQKAAKSIIDYFNN 619 >gi|330446241|ref|ZP_08309893.1| excinuclease ABC, C subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490432|dbj|GAA04390.1| excinuclease ABC, C subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 589 Score = 498 bits (1283), Expect = e-138, Method: Composition-based stats. Identities = 206/606 (33%), Positives = 329/606 (54%), Gaps = 31/606 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D AG V+YVGKA +L+KR+ SY +N + ++ I N+ TVT TE EAL+LE Sbjct: 1 MYDAAGVVIYVGKAKDLKKRLSSYFRTNVAGEKTRALVKNICNVDVTVTHTETEALILEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK+ P++N+LLRDDKS+PYIL++ K P L HR +G YFGP+ AV ++ Sbjct: 61 NYIKQYLPKYNVLLRDDKSYPYILLSAS-KHPRLSIHRGVKRRKGEYFGPYPDAGAVRES 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193 ++ +Q+ F +R C DSV+ +R+RPCL++QI RCSGPC IS E+Y + V + FL G Sbjct: 120 LHLMQKIFPVRQCEDSVYANRSRPCLMYQIGRCSGPCVEGLISDEEYQQQVQLVRLFLQG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDC---FSLYHN 250 + + + M QA+ ++E A +RD++ AL IQ + D + H+ Sbjct: 180 KDRQVISIMVEKMEQASQALEFERAATYRDQIQALRRIQEQQFVSQDNEDDIDVIGIAHS 239 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLS 306 LACI + G+ G+ ++F K +++T ++L+ F+ Q+Y + P ILLS Sbjct: 240 NGLACIHGLYIRQGKILGSRSYFPKVPADATLTEVLTGFVTQYYFNQVEGRVIPSAILLS 299 Query: 307 EEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365 E +E + + + G + +G + + ++ A NA + T K++ ++ Q Sbjct: 300 ETLGDEGETIAKALTEMAGRNISFKYNPRGSRAQYLKLAKTNAETALTSKINHRLTIQER 359 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 + L I R+E +D SH MG V VV ++G K +YR++N+ + Sbjct: 360 FFALQQALNLKPIS-RMECFDISHTMGEKTVASCVVFNQDGPYKQEYRRYNI--TGITGG 416 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD A M VLERR+S+ ++ ++ PD++ +DGG+GQLS A V+K Sbjct: 417 DDYAAMAQVLERRYSKEMELDK---------------IPDIIFIDGGRGQLSRAYDVVKP 461 Query: 486 --LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 + R ++ +AKG R G+E GE + + P L+ IQ +RDE+H AI+ Sbjct: 462 YIADWPKRPMLVGVAKGTTRKPGLETLIFVTGEEISMPSDSPALHLIQHIRDESHNHAIS 521 Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR +R K S L+++ GIGP R++ LL+ G ++ + ++S E +A + GIS +A K Sbjct: 522 GHRAQRAKVRKRSSLEDVEGIGPKRRQALLKYMGGMQELKKASKEEIAKVPGISPALAEK 581 Query: 603 IYNHFH 608 I + Sbjct: 582 IVDALQ 587 >gi|307704357|ref|ZP_07641274.1| excinuclease ABC, C subunit [Streptococcus mitis SK597] gi|307622117|gb|EFO01137.1| excinuclease ABC, C subunit [Streptococcus mitis SK597] Length = 615 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 168/620 (27%), Positives = 288/620 (46%), Gaps = 41/620 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G + + + + M A ++E A +RD + A+ ++ + Sbjct: 182 SMAQEVSDFLKGQDDKIIDDLKGKMATAAQTMEFERAAEYRDLIQAIGTLRTKQRVMTKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 VPNEVLIPQDIDEEAVKVLVDTKIVK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ + + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L+ + +QR++ Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKYFKSLTKIKEASVDEIVDV- 574 Query: 594 GISKKIACKIYNHFHKNTSH 613 G+ + +A + + Sbjct: 575 GVPRAVAEAVQRKLNPQEEE 594 >gi|300853519|ref|YP_003778503.1| excinuclease ABC subunit C [Clostridium ljungdahlii DSM 13528] gi|300433634|gb|ADK13401.1| excinuclease ABC, subunit C [Clostridium ljungdahlii DSM 13528] Length = 622 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 198/623 (31%), Positives = 323/623 (51%), Gaps = 19/623 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 + +P+ PGVY M + G V+YVGKA L+ R++ Y S NH+ ++ M+ I + Sbjct: 7 QLKVLPDKPGVYLMKNSLGEVIYVGKAKILKNRVRQYFQNSKNHSEKVKAMVKHIAEFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK+ +PR+NILL+DDK +P I IT P + R+ Sbjct: 67 IVTDSEMEALILECNLIKKYRPRYNILLKDDKGYPLIKITVNEDFPRIISARNMVKDGCK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV +T+ +++ F +R+C S+ + RPCL + I C PCTG I+ E Sbjct: 127 YFGPYISPSAVYETMEIIKKIFPIRTCRLSIKEGEMKGRPCLNYYIGLCKAPCTGYITKE 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + V FLSG N ++ +K+ +M A+ K ++E A RD++ A+ I Sbjct: 187 EYGKIVSGVMDFLSGKNRDISKKLKEDMEIASEKLEFEKAAELRDKILAVQKIIEKQKIT 246 Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D ++Y + +C+Q F G+ G F L+ + +I+S F+ FY Sbjct: 247 TGGFEDEDFINMYSDNVDSCVQVFFSRSGKIIGREHFILENTQDLPKGEIVSNFIEGFYG 306 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + EA+E LL+ + +V I +P++GEKR + NA + Sbjct: 307 GTAYIAKTIYVPEADEIELLQNWLSMKKDARVYIKIPQKGEKRATLNMVEENAKTTLKNF 366 Query: 356 ----LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 + + + L++ T+ + IP RIE YD S+I G +VG MVV + Sbjct: 367 KLKLIQDKKMYNTALEELTEALDMEDIPHRIEAYDISNIQGVDSVGTMVVFENGRAKNSD 426 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK-QEYSFPSWPDVVILD 470 YR+F N VK +D MR +L RRF E + K F ++PD++++D Sbjct: 427 YRRF--KINSVKGANDYDSMREILTRRFKHGFDEIERIKKRNLKFSAGKFCAFPDLILMD 484 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ++AA VLKK N++ I + + K + + K E ++++ ++ I Sbjct: 485 GGKGQVNAALEVLKKFNID--IPVCGMVKDDRHRTRG---LIYKNEEVLISPHSNVIKLI 539 Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DE HRFAIT HR R K+ +S L++I +G R++ LL+ F +++ I +++ L Sbjct: 540 ARIQDEVHRFAITYHRSLRNKRVLHSVLEDIPNVGNKRRKELLKKFESIENIKKATMNEL 599 Query: 590 ASIEGISKKIACKIYNHFHKNTS 612 I ++ A I ++F KN + Sbjct: 600 MDTPSIDRRTAESIISYFKKNEN 622 >gi|262393870|ref|YP_003285724.1| excinuclease ABC subunit C [Vibrio sp. Ex25] gi|262337464|gb|ACY51259.1| excinuclease ABC subunit C [Vibrio sp. Ex25] Length = 588 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 200/607 (32%), Positives = 315/607 (51%), Gaps = 31/607 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M + V+YVGKA +L+KR+ SY + + ++S I I TVT TE EAL+LE Sbjct: 1 MYNAEAVVIYVGKAKDLKKRLSSYFRKKVDSEKTRALVSNIAKIDVTVTHTETEALILEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK+ P++N+LLRDDKS+PYI I+ HK P L HR + +G YFGP+ AV +T Sbjct: 61 NYIKQYLPKYNVLLRDDKSYPYIFIS-GHKHPRLSIHRGAKKRKGEYFGPYPDSGAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHEAKKFLSG 193 ++ LQ+ F +R C D+V+ +RTRPCL++QI RC+GPC IS E+Y E V + FL G Sbjct: 120 LHLLQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVDTIISDEEYAELVGFVRMFLQG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCF---SLYHN 250 + + +++ M A+ + +E A RD++ A+ +Q + MD Sbjct: 180 KDQQVLKQLIEKMEVASQQLRFEDAAKFRDQIQAIRRVQEQQYVSEDSMDDMDVLGFAQE 239 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP----CPENILLS 306 +ACI G+ G+ + F K ++ ++ FL Q+Y P I+L+ Sbjct: 240 NGIACIHILMIRQGKVLGSRSHFPKIPQNTSQQEVFDSFLTQYYLSHNEARTIPSRIILN 299 Query: 307 EEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365 +E E+ + ++ + + G KV G + + ++ + NA + T K++ +++ Sbjct: 300 QELAEDIAPIQKALSEVAGRKVHFHTSPTGSRARYLKLSNTNALTAITTKINHKMTINQR 359 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 + L I R+E +D SH MG S + VV G VK +YR++N+ + Sbjct: 360 FHALRETLKLESIA-RMECFDISHTMGESTIASCVVFNNEGPVKQEYRRYNI--TGITGG 416 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD A M LERR+S+ + E+ PD++ +DGGKGQL+ A ++ + Sbjct: 417 DDYAAMGQALERRYSKQLDVEK---------------IPDIIFIDGGKGQLNRAHDIISQ 461 Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 + R +I IAKG R G+E G+ L L+ IQ +RDE+H AI Sbjct: 462 YWGDWPKRPIMIGIAKGVTRKPGLETLITVDGDEFHLPSDASALHLIQHIRDESHNHAIA 521 Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR +R K S L+ I GIGP R++ LL+ G ++ + R+S E +A + GIS +A Sbjct: 522 GHRAKRGKTRRTSALEGIEGIGPKRRQALLKYMGGLQELKRASVEEIAKVPGISHSLAEI 581 Query: 603 IYNHFHK 609 I+ + Sbjct: 582 IFQALKQ 588 >gi|194334457|ref|YP_002016317.1| excinuclease ABC subunit C [Prosthecochloris aestuarii DSM 271] gi|229558464|sp|B4S9K0|UVRC_PROA2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|194312275|gb|ACF46670.1| excinuclease ABC, C subunit [Prosthecochloris aestuarii DSM 271] Length = 616 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 179/629 (28%), Positives = 299/629 (47%), Gaps = 45/629 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRF 60 +P CPGVYQ + G ++YVGKA N++ R++SY H + + +++ I +I Sbjct: 15 KLSNLPTCPGVYQFKNNQGTIIYVGKAKNIRSRVRSYFREGPHISGKTKVLVNHIADIDI 74 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +EVEAL+LE N+IK LKPR+NI L+DDK++PY++IT+ P + R + Sbjct: 75 ILTSSEVEALILENNLIKDLKPRYNINLKDDKTYPYLVITN-EAFPRILITRQVKRDGST 133 Query: 121 YFGPFASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEI 175 YFGP+ + ++ + R L+ +++ R CL + I C GPC G+ Sbjct: 134 YFGPYTEARQLRSVLDLISTIFPVRKCKLKLTKENIESGRFSVCLNYHIHTCKGPCEGKQ 193 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 E Y+ + E K L G L ++ M++ + +E A + ++ L Sbjct: 194 REEDYLRMIEEIKGLLKGKTGALIRTLSAEMHRYADELRFEEAAELKIQIEGLRKYTERQ 253 Query: 236 DSIYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 + D F + +++ AC G+ G+ + + + +L L + Sbjct: 254 KVVSKDPVDRDVFGIAQHQDDACGVIFKIREGKLLGSQRMYFSNVDDEQHETLLRKCLEK 313 Query: 293 FYTDKP--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR 350 +Y + P P+ I L ++ ++ + ++ VPK GEK K++ + NA Sbjct: 314 YYLETPDLIPQEIFLPLPIDDDEVMALRELTGDI-NLRFIVPKIGEKAKLVAMCIDNARH 372 Query: 351 SHTQKLSTEISHQMI------LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGE 404 + L + + L+ + L P+RIE +DNSH G MV Sbjct: 373 HLEEYLIEKQKRGELSRIVPALQALQETLHLSRQPERIECFDNSHFQGTDYTSSMVCFVG 432 Query: 405 NGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWP 464 K+ YRKF L N + DD A M+ + RR+S +++E P Sbjct: 433 GKPRKSDYRKFKL--NSFEGSDDYAAMQEAVTRRYSGSLQDE--------------LPLP 476 Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524 D++++DGGKGQ++ A VL++L +E I +I +AK + E F + L Sbjct: 477 DLIVIDGGKGQVNTAWKVLQELGLE--IPVIGLAKRLE-----EIFLPNTPDPYNLAKTS 529 Query: 525 PILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583 P L +Q++RDEAHRFAIT HRK R K+ + L +I GIG LL+ FG+++ I++ Sbjct: 530 PALKLLQQIRDEAHRFAITYHRKLRTKRTIQTGLTDIAGIGEKSAMKLLEHFGSIEQIAK 589 Query: 584 SSPETLASIEGISKKIACKIYNHFHKNTS 612 + E + ++ G K A I ++F K Sbjct: 590 AEKEEILAVTG--PKTAEAILSYFRKKQP 616 >gi|227503573|ref|ZP_03933622.1| excinuclease ABC subunit C [Corynebacterium accolens ATCC 49725] gi|227075609|gb|EEI13572.1| excinuclease ABC subunit C [Corynebacterium accolens ATCC 49725] Length = 689 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 183/680 (26%), Positives = 308/680 (45%), Gaps = 82/680 (12%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D RV+YVGKA NL+ R+ +Y R M+ +++ +TV Sbjct: 13 TIPTEPGVYKFRDENKRVIYVGKAKNLRARLSNYFQDITQLHPRTRQMVLTASSVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +EVEAL LE IKR P FN++ RDDK++P + ++ +P + +R YFG Sbjct: 73 ASEVEALQLEYTWIKRFDPHFNVMYRDDKTYPMLAVSVGEVVPRAFFYRGPRRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ AV ++++ L R F +R+C+ V+ RPCLL I +C PC G +S E++ Sbjct: 133 PYSHAWAVRESLDLLTRVFPMRTCSKGVYNRHERLGRPCLLGYIGKCDAPCIGRVSKEEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 E V+E F++G ++ K+ ++M A ++E A RD L A+ I ++ Sbjct: 193 RETVNELVSFMNGNTAGVRRKLVKDMEAAAENLEFERAARLRDDLGAIDKIMEQQAVVFA 252 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ------------- 284 D + ++ A +Q G+ RG + ++ + ++ Sbjct: 253 DGTDADLIAFNSDELEAAVQIFHVRGGRIRGQRGWVVERAGDQATSEPIEEGQPDPALPA 312 Query: 285 ILSYFLRQFYTD-----------------------------------KPCPENILLSEEA 309 ++ FL QFY+D P IL+ Sbjct: 313 LVQNFLIQFYSDAVEREEQEAREDAALAADVPRRGVDQESHMEQRHVHVIPREILVQAMP 372 Query: 310 EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE----ISHQMI 365 EE+ + G +V + VP++G+KR +++ NA Q + Sbjct: 373 EESEQVVSLLEDLRGARVDLRVPQRGDKRSLMDTVEKNAKEQLRQHKLKRVGDLTARSAA 432 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 L+D + P RIE D SHI G V +VV + K+ YR++ + Sbjct: 433 LQDIQDALGMDQAPLRIECTDISHIQGTDVVASLVVFEDGIPKKSDYRRYRIKEAAGDGH 492 Query: 426 -DDCAMMRMVLERRFSQLIKN---------------EENLNFHPKKQEYSFPSWPDVVIL 469 +D + + RRF + ++ EE + + F P + I+ Sbjct: 493 SNDVGSIAEITRRRFKRHNQDKLANPDEEKEESSFAEEKVAEESAEAGRRFAYPPQLFIV 552 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGG Q++AAQ V +L + + +T++ +AK + E + E ++L L+ Sbjct: 553 DGGAPQVAAAQEVFDELGIVD-VTLVGLAKRLE-----EIWVPGDDEPVILPRNSQALFL 606 Query: 530 IQRLRDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 +Q++RDEAHRFAIT HR++R K S LD I G+GP R+ L++ FG+VK + +S + Sbjct: 607 LQQIRDEAHRFAITYHRQQRSKRMRSSALDAIPGLGPQRRTDLVKHFGSVKKLKAASVDE 666 Query: 589 LASIEGISKKIACKIYNHFH 608 + + G K+A +Y+ H Sbjct: 667 ICEVNGFGPKLAQTVYDKLH 686 >gi|332361103|gb|EGJ38907.1| excinuclease ABC subunit C [Streptococcus sanguinis SK1056] Length = 611 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 169/620 (27%), Positives = 291/620 (46%), Gaps = 41/620 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNDTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK +P++NI+L+DDKS+P+I IT+ P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENQPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + + C + + +C + S+ + Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNPP----EKVCFYYHLGQCKAHTICHVDSQYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E E FL G + + E + M ++E A +RD + ++ ++ + Sbjct: 182 ELAQEVAAFLKGQDDQIIEDLRGKMAGVAQAMEFEKAAEYRDLIQSIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P IL+ + +E ++ + K P++GEK++++ A NA + Sbjct: 302 KPNEILIPADIDEEAVRAMVDTKVLK-------PQRGEKKQLVNLATKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSIEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V++RR+S++I++ + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F + + L+ + +QR++ Sbjct: 458 QVNVAKEVIQE-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDQIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSH 613 G+ + +A ++ + T Sbjct: 575 GVPRAVAEAVWEKLNPKTQE 594 >gi|325687577|gb|EGD29598.1| excinuclease ABC subunit C [Streptococcus sanguinis SK72] Length = 611 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 171/622 (27%), Positives = 294/622 (47%), Gaps = 41/622 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK +P++NI+L+DDKS+P+I IT+ P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENQPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + + C + + +C ++ S+ + Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNPP----EKVCFYYHLGQCKAHTICQVDSQYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E E FL G + + E + M A ++E A +RD + ++ ++ + Sbjct: 182 ELAQEVAAFLKGQDDQIIEDLRGKMAGAAQAMEFEKAAEYRDLIQSIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKFHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P IL+ + +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 KPNEILIPADIDEEAVRALVDTKVLK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSIEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V++RR+S++I++ + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F + + L+ + +QR++ Sbjct: 458 QVNIAKEVIQE-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDQIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSHTP 615 G+ + +A + + T Sbjct: 575 GVPRAVAEAVREKLNPKTQEQE 596 >gi|229829567|ref|ZP_04455636.1| hypothetical protein GCWU000342_01664 [Shuttleworthia satelles DSM 14600] gi|229791556|gb|EEP27670.1| hypothetical protein GCWU000342_01664 [Shuttleworthia satelles DSM 14600] Length = 638 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 191/622 (30%), Positives = 323/622 (51%), Gaps = 21/622 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRF 60 +++P+ PGVY M D +++YVGKA +L KR+ Y +++ + M+ +I+ + Sbjct: 25 ELKKLPDAPGVYIMHDATDQIIYVGKAVSLTKRVHQYFQASHDEGVKKRQMVERISWFEY 84 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK +P++N LLRDDK++PYI +T + P + R Sbjct: 85 IVTDSELEALVLENNLIKEHRPKYNTLLRDDKTYPYIKVTLQEAYPRILFVRRVKKDGAK 144 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 Y+GPF+S +A +TI +Q+ + +R+C + + + RPCL + +K+C PC G+IS E Sbjct: 145 YYGPFSSAEATHQTIELVQKLYRIRTCNRRLPENIGKDRPCLNYHMKQCDAPCDGKISQE 204 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 YME VH+A +FL G + ++ MN A D+E A +RD L A+ H Sbjct: 205 DYMEHVHDALRFLDGDTGTVSRELTARMNDAAAAMDFERAAEYRDLLKAIEHTAQRQKIT 264 Query: 239 YNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D + A + + G+ G F + ++ ++L F+ QFY Sbjct: 265 RYDEEDLDVIAAAVEGEDAVVSVFYIRAGKMIGRDHFAVNVRADEGEKEVLGAFVHQFYA 324 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P P I L E +++ L + + G +V + P++G+ ++++ A NA + Sbjct: 325 GTPFIPREICLPIEIDDSRLTQDWLSDKQGQRVYLRYPRRGKNARLMDLAAKNAQMIMNR 384 Query: 355 KL----STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 E ++ + L + R+E YD SHIMG + VG MVV ++ Sbjct: 385 DQEKIKRQEGRTIGAMRQIAQLLGLERVE-RMEAYDISHIMGFATVGSMVVFERGRAKRS 443 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP-KKQEYSFPSWPDVVIL 469 YRKF L ++ DD A MR VL RRF ++ +E L ++ +F +PD++++ Sbjct: 444 DYRKFRLKT--IEGPDDYASMREVLTRRFRHGMEEKEKLREKQMDEKLGAFTKFPDILMM 501 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ+ A+ VL++L ++ I + + K + F L ++ Sbjct: 502 DGGKGQVHIAEEVLRELKLD--IPVAGMVKDDHHNTRGIYFH---DRELPIDKSSEGFQL 556 Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 I RL+DEAHRFAI+ H+ R A +S LD+I GIGP R++ L++ F + ++ S E Sbjct: 557 ISRLQDEAHRFAISYHKSLRSAAQVHSFLDDIPGIGPARRKALMRRFDDAQAMAAESVED 616 Query: 589 LASIEGISKKIACKIYNHFHKN 610 LA+ +G+++ A +++ H++ Sbjct: 617 LAASDGMNRTSAQAVWDFLHRH 638 >gi|313892820|ref|ZP_07826401.1| excinuclease ABC, C subunit [Veillonella sp. oral taxon 158 str. F0412] gi|313442751|gb|EFR61162.1| excinuclease ABC, C subunit [Veillonella sp. oral taxon 158 str. F0412] Length = 608 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 186/615 (30%), Positives = 311/615 (50%), Gaps = 34/615 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRF 60 +P PGVY D R++YVGKA NL+ R++SY+ ++ + ++ M+ + ++ Sbjct: 9 KVSHLPTTPGVYLWRDQYNRIIYVGKAINLRNRVRSYVRNDANRAPKVAAMMKRAVDVEI 68 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE+EAL+LE +IK +P++NI LRDDK++PY+ I+ + P +Y R Sbjct: 69 IQTKTEMEALILENTLIKEHEPKYNIRLRDDKTYPYVKISVQEDYPRVYMTRRLERDGAK 128 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGPF V +V + +++ + LR+C RPCL + + C PC +IS Y Sbjct: 129 YFGPFTDVTSVHVVLKLIRQYYPLRTCKSMKVE---RPCLQYHMHYCEAPCFNKISVSDY 185 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 +++ E + G L ++I M A + +E A +RD+L ++ IQ + Sbjct: 186 GKYIDEIVELFEGKPIPLLKEIKEKMELAAEELRFEDAARYRDQLTSIEKIQEKQRMVTQ 245 Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 +D L + ++AC+Q F G+ G +F++ D +S + + + + Sbjct: 246 RGDLDVLGLAVDTSMACVQLLFIRGGRLLGRENYFVQHDGDSAETIMTDFIKQYYGDTNF 305 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQ 354 P+ +LL ++ + LL F + G V ++VP++G K +I+ A NA Q Sbjct: 306 IPKELLLPMDSTDRDLLREWFTQLKGQNVDVSVPQRGYKMDMIKMAHENAETFLEERRRQ 365 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +K + LP +P+R+E +D SH G V MVV K +YR+ Sbjct: 366 WQHQIDKTGGAVKKLAEVLDLPRLPERMECFDISHTQGAETVASMVVFEGGKPAKKEYRR 425 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F L DD M ++ERR+ + + PD++I+DGGKG Sbjct: 426 FKLKTTQG-KPDDFKSMAEIMERRYGK----------------ETDWPMPDLIIIDGGKG 468 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 QL+AA +++ + V + + +IS+AK + E F + E+++L+ P L +Q++R Sbjct: 469 QLNAALPLIRGVGVTD-VPVISLAKRIE-----EVFVEGQSESIILSHHSPELQLLQQIR 522 Query: 535 DEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DEAHRFAIT HRK R K+ S LD I GIGP R++ L F +++ + +S + L+ +E Sbjct: 523 DEAHRFAITYHRKLRGKRNLESILDHIEGIGPKRRKALWAHFNSLEAMKEASIDELSKVE 582 Query: 594 GISKKIACKIYNHFH 608 ++ K A +YN F Sbjct: 583 SMNYKTAEALYNFFR 597 >gi|322385600|ref|ZP_08059244.1| excinuclease ABC subunit C [Streptococcus cristatus ATCC 51100] gi|321270338|gb|EFX53254.1| excinuclease ABC subunit C [Streptococcus cristatus ATCC 51100] Length = 611 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 171/622 (27%), Positives = 295/622 (47%), Gaps = 41/622 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 10 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 68 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ P L R G Y Sbjct: 69 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-EIYPRLIITRQVKKDGGLY 127 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F + C + + C + + +C + S+ + Sbjct: 128 FGPYPDVGAANEIKRLLDRIFTFKKCTNPP----AKVCFYYHLGQCEAHTICKRDSQYFK 183 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G ++ + +++ MN+ ++E A +RD + A+ ++ + Sbjct: 184 NMAQEVSDFLKGQDNKIIDELRDKMNKTAAAMEFERAAEYRDLIQAIGTLRTKQRVMAKD 243 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 244 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 303 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P IL+ + +E ++ + K P++GEK++++ A+ NA + Sbjct: 304 KPNEILIPADIDEEAVRAVVDTKVVK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 356 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ K +P RIE +DNS+IMG S V MVV K YRK Sbjct: 357 LEKSVEKTQGAIENLGKLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 415 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V++RR+S++I++ + PD++++DGG+G Sbjct: 416 YKIKT--VVGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 459 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V++ + I I + K K E F + + L+ + +QR++ Sbjct: 460 QVNIAKEVIQS-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 517 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+ L++ F ++ I +S + + + Sbjct: 518 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 576 Query: 594 GISKKIACKIYNHFHKNTSHTP 615 G+ + +A + ++ P Sbjct: 577 GVPRAVAEAVQAKLNQTEPSRP 598 >gi|322389721|ref|ZP_08063268.1| excinuclease ABC subunit C [Streptococcus parasanguinis ATCC 903] gi|321143560|gb|EFX38991.1| excinuclease ABC subunit C [Streptococcus parasanguinis ATCC 903] Length = 610 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 171/614 (27%), Positives = 293/614 (47%), Gaps = 41/614 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRRVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + + +C + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHLGQCMAHTVCHKDEAYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G + + +++ MN A ++E A +RD + A+ ++ + Sbjct: 182 GMEQEVSDFLKGQDDKIIDELKLKMNTAAQNMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P IL+ ++ +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 IPNEILIPQDIDEEAVKALVDTKVLK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ K +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSMEKTQGAIENLGKLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+S+++++ + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYSRVMRDG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F + + L+ + +QR++ Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLQVIELSRTSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+LL++ F ++ I ++ + + ++ Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQLLMKHFKSLTKIKEATVDEIVTV- 574 Query: 594 GISKKIACKIYNHF 607 GI + +A + Sbjct: 575 GIPRPVAEAVQAKL 588 >gi|303229550|ref|ZP_07316338.1| excinuclease ABC, C subunit [Veillonella atypica ACS-134-V-Col7a] gi|302515675|gb|EFL57629.1| excinuclease ABC, C subunit [Veillonella atypica ACS-134-V-Col7a] Length = 612 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 187/615 (30%), Positives = 312/615 (50%), Gaps = 34/615 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRF 60 +P PGVY D R++YVGKA NL+ R++SY+ ++ + ++T M+ + ++ Sbjct: 9 KVSHLPTTPGVYLWRDQYNRIIYVGKAINLRNRVRSYVRNDANRAPKVTAMMKRAVDVEI 68 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE+EAL+LE +IK KP++NI L+DDK++PY+ I+ + P +Y R Sbjct: 69 IQTKTEMEALILENTLIKEHKPKYNISLKDDKTYPYVKISVQEDYPRVYMTRRLERDGAK 128 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGPF V AV + +++ F LR+C RPCL + + C PC +IS Y Sbjct: 129 YFGPFTDVTAVHVVLKLIRQYFPLRTCKSMKVE---RPCLQYHMHYCEAPCFHKISVPDY 185 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 +++ E + G L ++I M +A + +E A +RD+L ++ IQ + Sbjct: 186 RKYIDEIIELFEGKPIPLLKEIKEKMEEAAEELRFEDAARYRDQLTSIEKIQEKQRMVTQ 245 Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 +D + + LAC+Q F G+ G +F++ + +S + + + + Sbjct: 246 RGDLDVLGIAVDGQLACVQLLFIRGGRLLGRENYFVQNEGDSEETIMTDFIKQYYGDTTF 305 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQ 354 P+ +LL E+ E L + F G +V + VP++G K +I+ A NA Q Sbjct: 306 IPKELLLPMESSEQHLFKDWFSDMKGQQVDVLVPQRGYKMDMIKMAHENAETFLEERRRQ 365 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +K + LP +P+R+E +D SH G V MVV K +YR+ Sbjct: 366 WQYQIDKSGGAVKKLAEVLDLPRLPERMECFDISHTQGSETVASMVVFEGGKPAKKEYRR 425 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F L DD M ++ERR+ + PD++I+DGGKG Sbjct: 426 FKLKTTQG-KPDDFKSMAEIMERRY----------------GNETDWPMPDLIIIDGGKG 468 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 QL+A+ +++ + V + + +IS+AK + E F + ++++L+ P L +Q++R Sbjct: 469 QLNASIPLIRAVGVTD-VPVISLAKRIE-----EVFVEGQSDSIILSHHSPELQLLQQIR 522 Query: 535 DEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DEAHRFAIT HRK R K+ S LD I+GIGP R++ L F +++ + ++S + LA ++ Sbjct: 523 DEAHRFAITYHRKLRGKRNLESLLDHIDGIGPKRRKALWAHFNSLEAMKKASIDELAKVD 582 Query: 594 GISKKIACKIYNHFH 608 ++ K A +YN F Sbjct: 583 SMNYKTAETLYNFFR 597 >gi|303260110|ref|ZP_07346083.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP-BS293] gi|303261294|ref|ZP_07347242.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP14-BS292] gi|303263959|ref|ZP_07349880.1| excinuclease ABC subunit C [Streptococcus pneumoniae BS397] gi|303265949|ref|ZP_07351845.1| excinuclease ABC subunit C [Streptococcus pneumoniae BS457] gi|303268332|ref|ZP_07354129.1| excinuclease ABC subunit C [Streptococcus pneumoniae BS458] gi|302637428|gb|EFL67915.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP14-BS292] gi|302638805|gb|EFL69267.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP-BS293] gi|302642170|gb|EFL72520.1| excinuclease ABC subunit C [Streptococcus pneumoniae BS458] gi|302644533|gb|EFL74784.1| excinuclease ABC subunit C [Streptococcus pneumoniae BS457] gi|302646364|gb|EFL76590.1| excinuclease ABC subunit C [Streptococcus pneumoniae BS397] Length = 614 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 169/622 (27%), Positives = 291/622 (46%), Gaps = 41/622 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMSHTICKKDEDYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G + + + + M A ++E A +RD + A+ ++ + Sbjct: 182 SMAQEVSDFLKGQDDKIIDNLKGKMAAAAQTMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 VPNEVLIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ + + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L+ + +QR++ Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I+G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSHTP 615 G+ + +A + + P Sbjct: 575 GVPRVVAEAVQRKLNPQGEALP 596 >gi|327470893|gb|EGF16349.1| excinuclease ABC subunit C [Streptococcus sanguinis SK330] Length = 609 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 169/615 (27%), Positives = 293/615 (47%), Gaps = 41/615 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK +P++NI+L+DDKS+P+I IT+ P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENQPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + + C + + +C ++ S+ + Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNPP----EKVCFYYHLGQCKAHTICQVDSQYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 + E FL G + + E + M A ++E A +RD + ++ ++ + Sbjct: 182 DLAQEVAAFLKGQDDQIIEDLRGKMAGAAQAMEFEKAAEYRDLIQSIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P IL+ + +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 KPNEILIPADIDEEAVRAMVDTKVLK-------PQRGEKKQLLNLAIKNARVSLHQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSIEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V++RR+S++I++ + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F + + L+ + +QR++ Sbjct: 458 QVNVAKEVIQE-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDQIVEV- 574 Query: 594 GISKKIACKIYNHFH 608 G+ + +A + + Sbjct: 575 GVPRAVAEAVREKLN 589 >gi|227329600|ref|ZP_03833624.1| excinuclease ABC subunit C [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 588 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 206/606 (33%), Positives = 323/606 (53%), Gaps = 31/606 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D V+YVGKA +L+KR+ SY S+ + + ++ I +I T+T TE EALLLE Sbjct: 1 MYDAGNTVIYVGKAKDLKKRLASYFRSHVASRKTEALVKSIKHIDVTITHTETEALLLEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK +PR+N+LLRDDKS+P I ++ P L HR + +G YFGPF + +AV +T Sbjct: 61 NYIKLYQPRYNVLLRDDKSYPMIFLS-GDAHPRLAVHRGAKHAKGEYFGPFPNGNAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193 + LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E Y + V + FLSG Sbjct: 120 LILLQKLFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVSGLVSEEDYQQQVDYVRLFLSG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCFSLYHNK 251 + + ++ M A+ +E A RD++ A+ + + +D S+ + Sbjct: 180 KDQQVLNQLISRMEAASRDLHFEDAARIRDQIQAVRRVTEKQFVSGDGEDLDVISVAFDA 239 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSE 307 +AC+ F G+ G+ ++F K + +++ F+ QFY + P ILL Sbjct: 240 GMACVYVLFIRQGKVLGSRSYFPKVPGGTELGEVVQTFVGQFYLQGSLGRTLPTEILLDF 299 Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367 + LL S G KV+I +G++ + ++ A NA + KLS + + L Sbjct: 300 TLPDKDLLTESLTAVAGRKVQIQTKPRGDRARYLKLARTNAATALVTKLSQQSTIHQRLA 359 Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427 LP R+E +D SH MG V VV NG ++++YR++N+ + + DD Sbjct: 360 ALANVLQLP-EIHRMECFDISHTMGEQTVASCVVFDANGPLRSEYRRYNI--SGITPGDD 416 Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487 A M VL RR+ + + + + PDV+++DGGKGQL AQ V L Sbjct: 417 YAAMAQVLRRRYGKALDDSK---------------IPDVIVIDGGKGQLGQAQAVFDSLQ 461 Query: 488 V---ENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 V +N+ ++ +AKG R AG+E F + GE + L P L+ IQ +RD++H AI Sbjct: 462 VSWDKNKPLLLGVAKGSDRKAGLETLFFESTGEGMALPPDSPALHVIQHIRDDSHDHAIG 521 Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HRK+R K S L+ I G+GP R++ LL+ G ++ + +S E +A++ GIS +A K Sbjct: 522 GHRKKRAKVRNTSTLELIEGVGPKRRQTLLKYMGGLQPLMNASIEEIANVPGISHALAEK 581 Query: 603 IYNHFH 608 I++ Sbjct: 582 IFHALK 587 >gi|225389831|ref|ZP_03759555.1| hypothetical protein CLOSTASPAR_03579 [Clostridium asparagiforme DSM 15981] gi|225044108|gb|EEG54354.1| hypothetical protein CLOSTASPAR_03579 [Clostridium asparagiforme DSM 15981] Length = 622 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 193/617 (31%), Positives = 313/617 (50%), Gaps = 24/617 (3%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVTCTEVEALLLE 73 M + ++YVGKA +L+ R++ Y S+ N T +I M+S I + +T +E+EAL+LE Sbjct: 1 MHNNRDEIIYVGKAISLKNRVRQYFQSSRNKTAKIEQMVSHIAWFEYILTDSELEALVLE 60 Query: 74 ANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFGPFASVDAVE 132 N+IK +PR+N +L+DDK++PYI T + P L RD YFGP+ S AV+ Sbjct: 61 CNLIKEHRPRYNTMLKDDKTYPYIKATVGEEFPRLLFSRDMKKDGKSRYFGPYTSAGAVK 120 Query: 133 KTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKF 190 T++ + + + +R+C ++ R + RPCL + IK+C PC G IS E Y++ +A F Sbjct: 121 DTLDLIHKLYRIRTCNRNLPRDTGKERPCLNYHIKQCDAPCQGYISREDYLKSFGQALDF 180 Query: 191 LSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSL 247 L+G L + + MNQA+ ++E AI +R+ L ++ + + D ++ Sbjct: 181 LNGRYAPLIKSLEEKMNQASEDMEFERAIEYRELLNSVKQVAQKQKITSSGREDRDIIAM 240 Query: 248 YHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-CPENILLS 306 ++ A +Q F G+ G F L+ + + +IL F++QFY P P + L Sbjct: 241 ARDEQDAVVQVFFIREGKLIGRDHFHLQAATAENDGEILDSFIKQFYAGTPFIPRELWLQ 300 Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLSTEISH 362 + ++ ++ G KVKI VPK+GEK +++E A NA + + E+ Sbjct: 301 VPVMDEEVISRWLTERRGQKVKIVVPKKGEKERLVELAARNAVLVLSQDKERIKKEELRT 360 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 + L + RIE +D S+ G +VG MVV + ++ YRKF + V Sbjct: 361 IGAMNQVGGLIGLDGVR-RIEAFDISNTSGVESVGSMVVYEDGRPKRSDYRKFKIRT--V 417 Query: 423 KTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 K DD A MR VL RRFS ++ E+ SF +PD++++DGG+GQ++ A Sbjct: 418 KGPDDYASMREVLTRRFSHGLREVREHRESGEDLSAGSFTRFPDLIMMDGGRGQVNIALE 477 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 VL L + I + + K + ++ I R++DEAHRFA Sbjct: 478 VLNSLGLS--IPVCGMVKDDFHRTRG---LYYNNVEVPIDRHSEGFRLITRIQDEAHRFA 532 Query: 542 ITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 I HR R K S LD+I GIGP R++ L++ F ++ I + E LA + ++++ A Sbjct: 533 IEYHRSLRGKGQVKSVLDDIPGIGPARRKALMREFKDIEAIRAAEVEDLAKVPQMNERAA 592 Query: 601 CKIYNHFHKNT--SHTP 615 ++Y F K S P Sbjct: 593 RQVYEFFRKPAVGSEAP 609 >gi|294791679|ref|ZP_06756827.1| excinuclease ABC subunit C [Veillonella sp. 6_1_27] gi|294456909|gb|EFG25271.1| excinuclease ABC subunit C [Veillonella sp. 6_1_27] Length = 608 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 187/615 (30%), Positives = 311/615 (50%), Gaps = 34/615 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRF 60 +P PGVY D R++YVGKA NL+ R++SY+ ++ + ++T M+ + ++ Sbjct: 9 KVSHLPTTPGVYLWRDQYNRIIYVGKAINLRNRVRSYVRNDANRAPKVTAMMKRAVDVEV 68 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE+EAL+LE +IK +P++NI LRDDK++PY+ ++ + P +Y R Sbjct: 69 IQTKTEMEALILENTLIKEHEPKYNIRLRDDKTYPYVKVSVQEDYPRVYMTRRLERDGAK 128 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGPF V +V + +++ + LR+C RPCL + + C PC +IS Y Sbjct: 129 YFGPFTDVTSVHVVLKLIRQYYPLRTCKSMKVE---RPCLQYHMHYCEAPCFNKISVPDY 185 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 +++ E + G L ++I M A +E A +RD+L+++ IQ + Sbjct: 186 RKYIDEIIELFEGKPIPLLKEIKSKMEAAAEDLRFEDAARYRDQLSSIEKIQEKQRMVTQ 245 Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 +D L + ++AC+Q F G+ G +F++ D +S+ + + + + Sbjct: 246 RGDLDVLGLAVDTSMACVQLLFIRGGRLLGRENYFVQHDGDSSETIMTDFIKQYYGDTNF 305 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQ 354 P+ +LL E+ + LL F + G V ++VP++G K +I+ A NA Q Sbjct: 306 IPKELLLPMESTDRDLLTEWFTQLKGQHVNVSVPQRGYKMDMIKMAHENAETFLEERRRQ 365 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +K + LP +P+R+E +D SH G V MVV K +YR+ Sbjct: 366 WQHQIDKTGGAVKKLAEILDLPRLPERMECFDISHTQGTETVASMVVFEGGKPAKKEYRR 425 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F L DD M ++ERR+ + PD++I+DGGKG Sbjct: 426 FKLKTTQG-KPDDFKSMAEIMERRY----------------GNETDWPMPDLIIIDGGKG 468 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 QL+AA +++ + V + + +IS+AK + E F + E+++L+ P L +Q++R Sbjct: 469 QLNAALPLIRAVGVTD-VPVISLAKRIE-----EVFVEGQSESIILSHHTPELQLLQQIR 522 Query: 535 DEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DEAHRFAIT HRK R K+ S LD I GIGP R++ L F +++ + +S + L +E Sbjct: 523 DEAHRFAITYHRKLRGKRNLESILDHIEGIGPKRRKALWAHFNSLEAMKEASIDELLKVE 582 Query: 594 GISKKIACKIYNHFH 608 ++ K A +YN F Sbjct: 583 SMNYKTAETLYNFFR 597 >gi|256159427|ref|ZP_05457202.1| excinuclease ABC subunit C [Brucella ceti M490/95/1] gi|265997862|ref|ZP_06110419.1| UvrABC system protein C [Brucella ceti M490/95/1] gi|262552330|gb|EEZ08320.1| UvrABC system protein C [Brucella ceti M490/95/1] Length = 555 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 288/554 (51%), Positives = 382/554 (68%), Gaps = 5/554 (0%) Query: 59 RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118 F VT TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T H+ P ++KHR + + + Sbjct: 1 EFVVTRTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRK 60 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 G YFGPFAS AV +TIN+LQR F LR+C DSVF RTRPCLL+QIKRCS PCT EIS E Sbjct: 61 GDYFGPFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDE 120 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y V EAK FLSG + ++K+ +A M A+ D+E A ++RDRLAALSH+Q+H Sbjct: 121 DYAGLVAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGIN 180 Query: 239 ---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D F+++ + CIQ FF GQN G +F K DS A++L FL QFY Sbjct: 181 PQTVEEADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYD 240 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 DKPCP+ +LLSE EE SL+ + + G+KV+++VP++GEK+++++ AL NA + ++ Sbjct: 241 DKPCPKLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRR 300 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L+ S +L+ + F LP P+RIE+YDNSHIMG +AVG M+V G GFVKNQYRKF Sbjct: 301 LAETSSQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKF 360 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ D+ DD MMR V+ERRFS+L+K + + +FP+WPDV+++DGG+GQ Sbjct: 361 NIRSTDITPGDDFGMMREVIERRFSRLVKEPGTPAGEVENPD-AFPAWPDVILIDGGQGQ 419 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 + A + +L K+ + + +T I IAKG R AG E+FF++ + L RDP+LYFIQRLRD Sbjct: 420 VGAVRQILGKMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRD 479 Query: 536 EAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFAI THR RRKK +PLDEI GIGP RKR LL FGT K +SR++ E L I+G Sbjct: 480 EAHRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDG 539 Query: 595 ISKKIACKIYNHFH 608 IS+ +A I++HF Sbjct: 540 ISEAMARAIHDHFR 553 >gi|222110392|ref|YP_002552656.1| excinuclease ABC subunit c [Acidovorax ebreus TPSY] gi|221729836|gb|ACM32656.1| excinuclease ABC, C subunit [Acidovorax ebreus TPSY] Length = 657 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 208/650 (32%), Positives = 315/650 (48%), Gaps = 55/650 (8%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PGVY+ D +LYVGKA NL+KR+ SY + RI HM+ +I + TV + Sbjct: 16 LPPLPGVYRYFDAQNVLLYVGKARNLKKRVSSYFSKQHGGTRIGHMVGRIARLETTVVRS 75 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITD-----------KHKIPALYKHRDS 114 E EALLLE N+IK L P++NIL RDDKS+PY+ IT P + +R + Sbjct: 76 EAEALLLENNLIKSLGPKYNILFRDDKSYPYLKITGVSAKDGTGDAPGQCYPRMAYYRGA 135 Query: 115 STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE 174 + YFGP+ AV+++I LQ+ F LR+C D+VF +RTRPCLL+QIKRCS PC G Sbjct: 136 VDKRHRYFGPYPGAWAVKESIQLLQKVFRLRTCEDTVFANRTRPCLLYQIKRCSAPCVGL 195 Query: 175 ISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234 IS Y V A+ L G L + + M K ++E A R+++ AL+ + + Sbjct: 196 ISPTAYAADVRSAEAMLLGETQELLQTLEERMLAYAEKLEFEQAAEVRNQITALARVLHQ 255 Query: 235 NDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST---------- 281 +D ++ AC+ G++ G +F E+T Sbjct: 256 QAVETASDKDVDILAVKVAGGRACVNLAMVRGGRHLGDRPYFPVHVEEATGVFQLETRED 315 Query: 282 -----------------NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYG 324 AQIL+ F+ Q Y P P ++ SE + L +Q G Sbjct: 316 APDNLMVEEAGGLEQSVPAQILAAFIAQHYLGVPLPPTLITSEPVDPALLW--VLAQQTG 373 Query: 325 YKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPH---IPKR 381 + + + ++R +E A NA + L+ E S + + + L Sbjct: 374 VRATVVHQPREQRRIWLEMAEQNAQIQLARLLAEEGSQRARTRALAEALDLEAESLDDLT 433 Query: 382 IEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQ 441 IE +D SH G + VV + +YR+F + DD A MR VL RR+S+ Sbjct: 434 IECFDISHTAGEATQASCVVFHHHKMQSGEYRRF--KIEGITPGDDYAAMRQVLMRRYSK 491 Query: 442 LIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGP 501 + + + P PD+V++DGGKGQ+S A+ V ++L ++ I+ + KG Sbjct: 492 VAEAQREAGGAEVTNA---PRLPDLVLVDGGKGQVSMARDVFQELGLDIS-RIVGVEKGE 547 Query: 502 KRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--SPLD 558 R G+E+ G + + L L + ++RDEAHRFAIT R R K S L+ Sbjct: 548 GRKVGLEELVFADGRDKVYLGRDSAALMLVAQIRDEAHRFAITGMRAARAKVRVGGSRLE 607 Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 +I G+GP ++ LLQ FG V+ ++ +S + LA++EGIS +A +IY Sbjct: 608 DIPGVGPKKRARLLQRFGGVRGVADASVDDLATVEGISHDLAEEIYRALR 657 >gi|260779031|ref|ZP_05887923.1| excinuclease ABC subunit C [Vibrio coralliilyticus ATCC BAA-450] gi|260605195|gb|EEX31490.1| excinuclease ABC subunit C [Vibrio coralliilyticus ATCC BAA-450] Length = 588 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 201/607 (33%), Positives = 315/607 (51%), Gaps = 31/607 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M + V+YVGKA +L+KR+ SY + + ++S I+ I TVT TE EAL+LE Sbjct: 1 MYNAEAVVIYVGKAKDLKKRLSSYFRKKVDSEKTRALVSNIDKIDVTVTHTETEALILEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK+ P++N+LLRDDKS+PYI ++ HK P L HR + +G YFGP+ AV +T Sbjct: 61 NYIKQYLPKYNVLLRDDKSYPYIFVS-GHKHPRLSMHRGAKKRKGEYFGPYPDSGAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYMEFVHEAKKFLSG 193 ++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC IS E Y E V + FL G Sbjct: 120 LHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVSSIISDEDYAELVGFVRLFLQG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCF---SLYHN 250 + + + M A+ +E A RD++ A+ +Q + D Sbjct: 180 KDQQVLTTLVEKMELASKSLKFEDAAKFRDQIQAIRRVQEQQFVSEDSQDDMDVLGFAQE 239 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP----CPENILLS 306 +AC+ G+ G+ + F K +++T ++ FL Q+Y P I+L+ Sbjct: 240 NGIACVHILMIRQGKILGSRSHFPKIPNDTTQEEVFYSFLSQYYLSHNEARTIPTRIILN 299 Query: 307 EEAEETSLL-EISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365 E SL + + + G KV V G + + ++ + NA + T K++ +++ Sbjct: 300 SGLMEESLPLQEALGEIAGRKVNFHVNPTGTRGRYLKLSNTNALTAITTKINHKMTISQR 359 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 K+ + + I R+E +D SH MG S + VV + G VK +YR++N+ + Sbjct: 360 FKELREVLGMDIIT-RMECFDISHTMGESTIASCVVFNQEGPVKQEYRRYNI--TGITGG 416 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD A M LERR+S+ + E+ PD+V +DGGKGQL+ A ++ + Sbjct: 417 DDYAAMGQALERRYSKQLDVEK---------------IPDIVFIDGGKGQLNRAFEIISQ 461 Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 + R +I IAKG R G+E GE L P L+ +Q +RDE+H AI Sbjct: 462 YWGDWPKRPRLIGIAKGVTRKPGLETLITTDGEEFNLPSDAPALHLMQHIRDESHNHAIA 521 Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR +R K S L+ I G+GP R++ LL+ G ++ + R+S E +A + GIS +A Sbjct: 522 GHRAKRGKTRRTSALEGIEGVGPKRRQALLKYMGGLQELQRASVEEIAKVPGISVSLAEN 581 Query: 603 IYNHFHK 609 IY + Sbjct: 582 IYQALKQ 588 >gi|315612731|ref|ZP_07887642.1| excision endonuclease subunit UvrC [Streptococcus sanguinis ATCC 49296] gi|315314841|gb|EFU62882.1| excision endonuclease subunit UvrC [Streptococcus sanguinis ATCC 49296] Length = 615 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 167/619 (26%), Positives = 290/619 (46%), Gaps = 43/619 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK +P++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENQPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICQKDEAYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G + + + + M +A ++E A +RD + A+ ++ + Sbjct: 182 SMAQEVSDFLKGQDDKIIDDLKGKMAKAAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 VPNEVLIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ + + PD++++DGG+G Sbjct: 414 YKIKT--VVGADDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQG-VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 Q++ A+ + +L ++ I I + K K E F E + L+ + +QR+ Sbjct: 458 QVNIAKQVIQDELGLD--IPIAGLQKNDKHQT-HELLFGDPLEVVGLSRNSQEFFLLQRI 514 Query: 534 RDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 +DE HRFAIT HR+ R K ++S LD I+G+GP RK+ L++ F ++ I +S + + + Sbjct: 515 QDEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMKHFKSLIKIKEASVDEIVEV 574 Query: 593 EGISKKIACKIYNHFHKNT 611 G+ + +A + + Sbjct: 575 -GVPRAVAEAVQRKLNPQE 592 >gi|148983998|ref|ZP_01817317.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP3-BS71] gi|147924145|gb|EDK75257.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP3-BS71] gi|301799663|emb|CBW32223.1| UvrABC DNA repair system protein C [Streptococcus pneumoniae OXC141] Length = 614 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 168/622 (27%), Positives = 291/622 (46%), Gaps = 41/622 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDETYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G ++ + + + M A ++E A +RD + A+ ++ + Sbjct: 182 SMAQEVSDFLKGQDNKIIDDLKSKMAVAAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 VPNEVLIPQDIDEEAVKALVDSKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MV+ K YRK Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVIFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ + + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L+ + +QR++ Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I+G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSHTP 615 G+ + +A + + P Sbjct: 575 GVPRVVAEAVQRKLNPQGEALP 596 >gi|325567477|ref|ZP_08144144.1| excinuclease ABC subunit C [Enterococcus casseliflavus ATCC 12755] gi|325158910|gb|EGC71056.1| excinuclease ABC subunit C [Enterococcus casseliflavus ATCC 12755] Length = 596 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 180/619 (29%), Positives = 295/619 (47%), Gaps = 43/619 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D +++YVGKA L+ R++SY ++ T + ++ +IN+ + VT + Sbjct: 12 LPDQPGCYLMKDKNNKIIYVGKAKILKNRVRSYFTGSHDT-KTERLVQEINDFEYVVTES 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 EALLLE N+I++ KP++NI+L+DDKS+P+I +T K + P L R YFGP+ Sbjct: 71 NTEALLLEINLIQKNKPKYNIMLKDDKSYPFIKVT-KERYPRLIITRKVLKDGALYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 A +T L R F LR C + RPCL + + +C P + + Y + V Sbjct: 130 PDARAANETKRVLDRLFPLRKCG----PSQKRPCLYYHLGQCVCPYVNNVDPKDYQKIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 + K F GG+ ++ + + M +A ++E A RD++ A+ + Sbjct: 186 QVKHFFHGGHVDILKDLKEKMGEAIETLEFERAAELRDQIQAIDTVMTRQKMTLTDLMDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +E+ + + P+ Sbjct: 246 DVFGYSVDKGWMCVQVFFIRQGKLIEREVSLFPFYNEADEDFLTFVGQFYQKNEHFIPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358 + + + + L + K + P++G+K+K+++ A NA + QK T Sbjct: 306 VFVPQNVDAAPLEALLETK-------VLQPQRGDKKKLVDLANKNARIALAQKFALIERT 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E + +P RIE +DNSHIMG V MVV + K+ YRK+ + Sbjct: 359 EERTIGAVDRLGDAMGIPTP-YRIEAFDNSHIMGTDPVSAMVVFVDGKPFKDDYRKYKIR 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + DD M+ V+ RR+S+++K +PD++I+DGGK Q+ A Sbjct: 418 TA--QGGDDYGSMQEVIYRRYSRVLKEN--------------LPFPDLIIIDGGKAQVGA 461 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 AQ VL + I + + K K E F + + + L + +QR++DE H Sbjct: 462 AQEVLHN-QLGLDIPVAGLVKNNKHKTS-ELIFGEFLDPIQLERNSVEFFLLQRIQDEVH 519 Query: 539 RFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ R K ++S LDEI G+GP RK+ L+++F ++K I +S E + GI K Sbjct: 520 RFAITFHRQLRSKNSFSSKLDEIPGLGPKRKQQLMKTFKSLKNIQAASVEEIQQA-GIPK 578 Query: 598 KIACKIYNHFHKNTSHTPT 616 +A I + PT Sbjct: 579 AVAETILAKL--GDQNQPT 595 >gi|226366363|ref|YP_002784146.1| excinuclease ABC subunit C [Rhodococcus opacus B4] gi|254764941|sp|C1B4L2|UVRC_RHOOB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|226244853|dbj|BAH55201.1| UvrABC system protein C [Rhodococcus opacus B4] Length = 743 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 184/690 (26%), Positives = 303/690 (43%), Gaps = 86/690 (12%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA +L+ R+ SY + R M++ ++ +TV Sbjct: 13 TIPVDPGVYKFRDPHGRVIYVGKAKSLRSRLNSYFADVSTLHPRTRQMVTTAGSVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE N IK PRFN+ RDDK++P + +T + P L+ +R YFG Sbjct: 73 STEVEALQLEYNWIKEFDPRFNVRYRDDKTYPVLAVTLNEEYPRLFVYRGPRRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F R+C+ VF+ RPCLL I +CS PC G +S+ ++ Sbjct: 133 PYSHAWAIRETLDLLLRVFPARTCSAGVFKRHNQIGRPCLLGYIDKCSAPCVGRVSAAEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + V + FLSG L ++ M QA+ + D+E+A RD + AL + Sbjct: 193 RKIVEDFCDFLSGRTDKLVRQLEARMQQASEELDFETAARLRDDVGALRRALEKQAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE------------STNAQI 285 D + ++ A +Q G+ RG + ++ + S + Sbjct: 253 DGTDADVAAFATDELEAAVQVFHVRGGRVRGQRGWVVEKAGDVIDWAAVDSAAGSDLPLL 312 Query: 286 LSYFLRQFYTDKP--------------CPENILLSEEAEETSLLEISFFKQYGYKVKITV 331 + FL QFY ++ P +L+ + ++ G V++ V Sbjct: 313 VEQFLTQFYGEQAALSGAADQEAGSSGVPREVLVPVLPPDAEQVQEWLSGLRGSAVRLRV 372 Query: 332 PKQGEKRKIIEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDN 387 P++G+K+ + E NA + Q S L+ + L P RIE D Sbjct: 373 PQRGDKKALAETVQRNAMEALQQHKLRRAGDFTSRSAALQGIQEALDLDSAPLRIECVDI 432 Query: 388 SHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKN- 445 SH+ G V +VV + K+ YR + + + DD A + V RRF + ++ Sbjct: 433 SHVQGTDVVASLVVFEDGLPRKSDYRHYAIKEAAGDGRSDDVASIAEVTRRRFLRHNRDV 492 Query: 446 ----------------------------------------EENLNFHPKKQEYSFPSWPD 465 E + F P+ Sbjct: 493 GVLRAEAAGADGDQASDTDGDQVSDTDGDQVSGGDGGDLAPEAAIDPQTGRPRRFAYPPN 552 Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525 + ++DGG Q++AA VL +L + + + +I +AK + E + + + ++L Sbjct: 553 LYVVDGGAPQVAAASAVLDELGITD-VAVIGLAKRLE-----EVWVPGEEDPVILPRTSE 606 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 LY +QR+RDEAHRFAIT HR +R + S LD + G+G R++ L+ FG+V + ++ Sbjct: 607 SLYLLQRVRDEAHRFAITFHRSKRSRRMTASALDSVRGLGETRRKALVTHFGSVAKLKQA 666 Query: 585 SPETLASIEGISKKIACKIYNHFHKNTSHT 614 S E + ++ GI A + Sbjct: 667 SVEEITAVPGIGTATAKAVLTALGAEEPSA 696 >gi|227552099|ref|ZP_03982148.1| excision endonuclease subunit UvrC [Enterococcus faecium TX1330] gi|257895305|ref|ZP_05674958.1| excinuclease ABC [Enterococcus faecium Com12] gi|227178765|gb|EEI59737.1| excision endonuclease subunit UvrC [Enterococcus faecium TX1330] gi|257831870|gb|EEV58291.1| excinuclease ABC [Enterococcus faecium Com12] Length = 592 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 186/613 (30%), Positives = 309/613 (50%), Gaps = 40/613 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY +++T + ++S+I + + VT + Sbjct: 12 LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFTGSHNT-KTERLVSEIEDFEYIVTES 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EALLLE N+IK+ P++NI+L+DDK++P++ IT+ K P L R + YFGP+ Sbjct: 71 NIEALLLEINLIKKNDPKYNIMLKDDKTYPFLKITN-EKYPRLVITRKVLKDKALYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 V A +T L R F LR C S + PCL + + +C P ++ + Y + V Sbjct: 130 PDVGAANETKKILDRLFPLRKCKPSQTKE---PCLYYHLGQCLCPYYFDVDPKVYTKIVD 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E K FL+GG+ ++ +I + M +A ++E A +RD++ A+ I Sbjct: 187 EVKNFLNGGHEKIESEIHQKMEKAAENMEFEKAAEYRDQIRAIETIMTRQKMTNTDLLDR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +E+ + + P+ Sbjct: 247 DVFGYAIDKGWMCVQVFFVRQGKLIERDVSMFPFYNEAEEDFLTYIGQFYQENEHFIPKE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 +L+ + ++ S+ + K + PK+GEK+K++E A NA + Sbjct: 307 VLIPDTIDKPSVEALLDTK-------VLQPKRGEKKKLVELANKNASVALNERFDLIARK 359 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + ++ +P RIE +DNS+IMG + V MVV + + +YRK+ + Sbjct: 360 QERTIGAVERLGNAMNIPTP-IRIESFDNSNIMGTNPVAAMVVFIDGKPARKEYRKYKIK 418 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V DD A MR V+ RR+S++I+ PD++++DGGKGQ+ Sbjct: 419 T--VNGPDDYASMREVVYRRYSRVIREG--------------LPLPDLILIDGGKGQVDV 462 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ VL + + I I +AK K E F + L P + +QR++DE H Sbjct: 463 AKDVL-ENQLGIDIPIAGMAKNDKHKT-NELLFGTDLAVVPLERNSPEFFLLQRVQDEVH 520 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ R K ++ S LDEI G+GP RK++LL+ F ++K I+ ++ E L I G+ K Sbjct: 521 RFAITFHRQLRSKNSFASRLDEIEGLGPKRKKMLLKEFKSLKNITAATIEELQEI-GLPK 579 Query: 598 KIACKIYNHFHKN 610 +A +++ H+ Sbjct: 580 NVAQNVFDKLHQE 592 >gi|325695872|gb|EGD37763.1| excinuclease ABC subunit C [Streptococcus sanguinis SK160] Length = 611 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 170/618 (27%), Positives = 293/618 (47%), Gaps = 41/618 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNDTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK +P++NI+L+DDKS+P+I IT+ P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENQPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + + C + + +C ++ S+ + Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNPP----EKVCFYYHLGQCKAHTICQVDSQYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E E FL G + + E + M A ++E A +RD + ++ ++ + Sbjct: 182 ELAQEVAAFLKGQDDQIIEDLRGKMAGAAQAMEFEKAAEYRDLIQSIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P IL+ + +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 KPNEILIPADIDEEAVRAMVDTKVLK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSIEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V++RR+S++I++ + PD++++DGG G Sbjct: 414 YKIKT--VVGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGLG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F + + L+ + +QR++ Sbjct: 458 QVNVAKEVIQE-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDQIVEV- 574 Query: 594 GISKKIACKIYNHFHKNT 611 G+ + +A + ++ T Sbjct: 575 GVPRAVAEAVREKLNQKT 592 >gi|293378176|ref|ZP_06624345.1| excinuclease ABC, C subunit [Enterococcus faecium PC4.1] gi|292643040|gb|EFF61181.1| excinuclease ABC, C subunit [Enterococcus faecium PC4.1] Length = 592 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 186/613 (30%), Positives = 309/613 (50%), Gaps = 40/613 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY +++T + ++S+I + + VT + Sbjct: 12 LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFTGSHNT-KTERLVSEIEDFEYIVTES 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EALLLE N+IK+ P++NI+L+DDK++P++ IT+ K P L R + YFGP+ Sbjct: 71 NIEALLLEINLIKKNDPKYNIMLKDDKTYPFLKITN-EKYPRLVITRKVLKDKALYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 V A +T L R F LR C S + PCL + + +C P ++ + Y + V Sbjct: 130 PDVGAANETKKILDRLFPLRKCKPSQTKE---PCLYYHLGQCLCPYYFDVDPKVYTKIVD 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E K FL+GG+ ++ +I + M +A ++E A +RD++ A+ I Sbjct: 187 EVKNFLNGGHEKIESEIHQKMVKAAENMEFEKAAEYRDQIRAIETIMTRQKMTNTDLLDR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +E+ + + P+ Sbjct: 247 DVFGYAIDKGWMCVQVFFVRQGKLIERDVSMFPFYNEAEEDFLTYIGQFYQENEHFIPKE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 +L+ + ++ S+ + K + PK+GEK+K++E A NA + Sbjct: 307 VLIPDTIDKPSVEALLDTK-------VLQPKRGEKKKLVELANKNASVALNERFDLIARK 359 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + ++ +P RIE +DNS+IMG + V MVV + + +YRK+ + Sbjct: 360 QERTIGAVERLGNAMNIPTP-IRIESFDNSNIMGTNPVAAMVVFIDGKPARKEYRKYKIK 418 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V DD A MR V+ RR+S++I+ PD++++DGGKGQ+ Sbjct: 419 T--VNGPDDYASMREVIYRRYSRVIREG--------------LPLPDLILIDGGKGQVDV 462 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ VL + + I I +AK K E F + L P + +QR++DE H Sbjct: 463 AKDVL-ENQLGIDIPIAGMAKNDKHKT-NELLFGTDLAVVPLERNSPEFFLLQRVQDEVH 520 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ R K ++ S LDEI G+GP RK++LL+ F ++K I+ ++ E L I G+ K Sbjct: 521 RFAITFHRQLRSKNSFASRLDEIEGLGPKRKKMLLKEFKSLKNITAATIEELQEI-GLPK 579 Query: 598 KIACKIYNHFHKN 610 +A +++ H+ Sbjct: 580 NVAQNVFDKLHQE 592 >gi|331268616|ref|YP_004395108.1| exonuclease ABC subunit C [Clostridium botulinum BKT015925] gi|329125166|gb|AEB75111.1| exonuclease ABC, C subunit [Clostridium botulinum BKT015925] Length = 622 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 192/623 (30%), Positives = 324/623 (52%), Gaps = 19/623 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 + +P+ PGVY M + G V+YVGKA L+ R++ Y S NH+ ++ M+ I + Sbjct: 7 QLKIIPDKPGVYLMRNSLGEVIYVGKAKVLKNRVRQYFQNSKNHSSKVRAMVKNIAEFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE N+IK+ +PR+NILL+DDK +P+I IT P ++ R + Sbjct: 67 IITDSEMEALILECNLIKKYRPRYNILLKDDKHYPFIKITVNEDFPRIFITRIRAKDGAK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ ++ +TI +++ F +R+C S+ +PCL + IK C+ PC G IS + Sbjct: 127 YFGPYPETSSIYETIELIKKVFPIRNCRLSIKSDSESIKPCLNYHIKLCTAPCAGYISKD 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 +Y + + + L+G ++ + ++ M +A+ + ++E A RD++ A+ I+ Sbjct: 187 EYGKTIKKIIDLLNGKDNEVIYELKEKMKEASEELEFEKAAAIRDKILAVEKIRERQKII 246 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 ++ D ++Y ++ C Q F G+ G F L I+S F++ FY Sbjct: 247 TSNFDNEDFINIYSDEFDWCAQIFFARDGKIIGREHFILDKGIFEEKKDIISNFIKDFYG 306 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351 + + + LLE + G KV I +P +GEK+K+++ NA + Sbjct: 307 GTAFIPKNIYVPDIMDVELLENWLSVKKGSKVSIKIPLKGEKKKLLDLVESNAKNTLEQF 366 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 + + + ILK+ L IP RIE YD S+I G +VG M+V + + Sbjct: 367 KLKIKVDKELYSNILKELQSLLGLEDIPNRIEAYDISNIQGVDSVGTMIVFEDGKPKNSD 426 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILD 470 YR+F + VK +D M+ +L RRF ++ +E + K F +PD++++D Sbjct: 427 YRRFKIKT--VKGANDYDSMKEILIRRFKHGLEEIKEIQKRNLKLSGAKFSVFPDLILMD 484 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ++ A VLK LN+ I + + K K V + + + I+ I Sbjct: 485 GGKGQVNIALEVLKNLNIT--IPVCGMVKDDKHKTRG---LVYNNREINIKSNNKIMQLI 539 Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DE HRFAIT HR R K+ +S L++I IG R++ LLQ FG++ I ++S + L Sbjct: 540 TRIQDEVHRFAITYHRSLRNKRVLHSILEDIPNIGIKRRKELLQKFGSIDNIKKASYDKL 599 Query: 590 ASIEGISKKIACKIYNHFHKNTS 612 S + I++K A I ++F K+ Sbjct: 600 LSTDSINEKAAKSIIDYFRKHND 622 >gi|15902587|ref|NP_358137.1| excinuclease ABC subunit C [Streptococcus pneumoniae R6] gi|116515431|ref|YP_816039.1| excinuclease ABC subunit C [Streptococcus pneumoniae D39] gi|168482850|ref|ZP_02707802.1| excinuclease ABC, C subunit [Streptococcus pneumoniae CDC1873-00] gi|32130298|sp|Q8DQQ9|UVRC_STRR6 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|122279075|sp|Q04LQ9|UVRC_STRP2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|15458119|gb|AAK99347.1| Exonuclease ABC - subunit C [Streptococcus pneumoniae R6] gi|116076007|gb|ABJ53727.1| excinuclease ABC, C subunit [Streptococcus pneumoniae D39] gi|172043714|gb|EDT51760.1| excinuclease ABC, C subunit [Streptococcus pneumoniae CDC1873-00] gi|332203775|gb|EGJ17842.1| excinuclease ABC, C subunit [Streptococcus pneumoniae GA47368] Length = 614 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 167/616 (27%), Positives = 288/616 (46%), Gaps = 41/616 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L R Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGSLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G + + + + M A ++E A +RD + A+ ++ + Sbjct: 182 SMAQEVSDFLKGQDDKIIDDLKSKMAVAAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 VPNEVLIPQDIDEEAVKALVDSKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V+ RR+ ++ + + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L+ + +QR++ Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I+G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMRHFKSLTKIKEASVDEIVEV- 574 Query: 594 GISKKIACKIYNHFHK 609 G+ + +A + + Sbjct: 575 GVPRVVAEAVQRKLNP 590 >gi|257870453|ref|ZP_05650106.1| excinuclease ABC subunit C [Enterococcus gallinarum EG2] gi|257804617|gb|EEV33439.1| excinuclease ABC subunit C [Enterococcus gallinarum EG2] Length = 596 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 176/610 (28%), Positives = 294/610 (48%), Gaps = 41/610 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY ++ T + ++ +I + + VT + Sbjct: 12 LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFTGSHDT-KTERLVQEIADFEYVVTES 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 EALLLE N+I++ KP++NI+L+DDKS+P+I +T+ + P L R YFGP+ Sbjct: 71 NTEALLLEINLIQKNKPKYNIMLKDDKSYPFIKVTN-ERYPKLIITRKVLKDGALYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 A +T L R F LR C + RPCL + + +C P + ++Y + V Sbjct: 130 PDARAANETKRILDRLFPLRKCG----ASQKRPCLYYHLGQCVCPYVHHMDPKEYRKIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 + K F GG+ +++++ M +A ++E A RD++ A+ + Sbjct: 186 QVKHFFHGGHVEIQKELKEKMGEAIESLEFERAAELRDQIQAIDTVMTRQKMTLTDLLDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +E+ + + P+ Sbjct: 246 DVFGYSVDKGWMCVQVFFIRQGKLIEREVSLFPFYNEAEEDFLTFIGQFYQKNEHFIPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358 I + + E L + K + P++G+K+K+++ A NA + QK T Sbjct: 306 IFVPQTIEREPLEVLLKTK-------VLQPQRGDKKKLVDLANKNAQIALDQKFALIERT 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E ++ + + RIE +DNSHIMG V MVV + K+ YRK+ + Sbjct: 359 EERTIGAVEKLGEAMGISAP-YRIEAFDNSHIMGTDPVSAMVVFVDGKPSKDDYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + DD M+ V+ RR+S+++K + +PD++++DGGKGQ+ A Sbjct: 418 TA--QGGDDYGSMQEVIYRRYSRVLKEK--------------LPFPDLIVIDGGKGQVGA 461 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 AQ VL + I + + K K E F + + L + +QR++DE H Sbjct: 462 AQDVLHN-QLGLDIPVAGLVKNNKHKTS-ELLFGDDLQPIQLERNSVEFFLLQRIQDEVH 519 Query: 539 RFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ R K ++S LDEI G+GP RK+ L+++F ++K I +S + GI + Sbjct: 520 RFAITFHRQLRSKNSFSSRLDEIPGLGPKRKQQLMKTFKSLKNIQAASVAEIQQA-GIPQ 578 Query: 598 KIACKIYNHF 607 +A I Sbjct: 579 AVAETILEKL 588 >gi|241763695|ref|ZP_04761744.1| excinuclease ABC, C subunit [Acidovorax delafieldii 2AN] gi|241367084|gb|EER61458.1| excinuclease ABC, C subunit [Acidovorax delafieldii 2AN] Length = 666 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 207/656 (31%), Positives = 317/656 (48%), Gaps = 58/656 (8%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PGVY+ D +LYVGKA NL++R+ SY N+ RI HM+S+I + TV + Sbjct: 16 LPALPGVYRYFDAQDALLYVGKALNLKRRVSSYFQKNHGGTRIGHMVSKIVRMETTVVRS 75 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITD----------KHKIPALYKHRDSS 115 E EALLLE N+IK L P+FNIL RDDKS+PY+ IT P + +R + Sbjct: 76 EAEALLLENNLIKTLNPKFNILFRDDKSYPYLKITGTAGPDRGDAPGQVFPRMAYYRGAV 135 Query: 116 TIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEI 175 + YFGP+ S AV+++I LQ+ F LR+C D+VF +RTRPCLL+QIKRC+ PC G I Sbjct: 136 DKKHRYFGPYPSGWAVKESIQLLQKVFRLRTCEDTVFANRTRPCLLYQIKRCTAPCVGLI 195 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 S E Y V +A+ L G L + + M + + ++E A R+++ ALS + + Sbjct: 196 SPEAYAADVSQAQALLRGETQELLKAMETRMMAHSDRLEFEQAAEVRNQIQALSRVLHQQ 255 Query: 236 DSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST----------- 281 +D ++ AC+ G++ G +F ++ Sbjct: 256 SIETADDKDVDILAVRVQGGRACVNLAMVRGGRHLGDRPYFPVHVEDAAGVFAEEGSDAA 315 Query: 282 ----------NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITV 331 +L F+ Q Y P P ++ SE ++ L + +Q G +V Sbjct: 316 GTVAAPVRPVEVLVLEAFIAQHYLGVPVPPVLVTSEPVDKALLGAL--TEQSGVRVSAIH 373 Query: 332 PKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPH---IPKRIEIYDNS 388 + ++R ++ A NA + L+ E S Q + + LP IE +D S Sbjct: 374 QPREQRRAWLDMAQKNADLQLARLLAEEGSQQARTRALAEALDLPPDDLDQLTIECFDIS 433 Query: 389 HIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE- 447 H G S VV + ++YR++ + DD A MR VL RR+S++ + Sbjct: 434 HTAGESTQASCVVFHHHKMQSSEYRRY--KIEGITGGDDYAAMRQVLTRRYSKVAEAARE 491 Query: 448 ------------NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITII 495 N + PD+V++DGGKGQ+S A+ V L ++ I+ Sbjct: 492 AGGIDFAAAPPANGEGDGAIKPKGVARLPDLVLIDGGKGQVSVAREVFTALGLDLT-RIV 550 Query: 496 SIAKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY 554 + KG R G+E+ G + L L + ++RDEAHRFAIT R R K Sbjct: 551 GVEKGEGRKVGLEELVFADGREKVYLGKDSAALMLVAQIRDEAHRFAITGMRAARSKVRV 610 Query: 555 --SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 L+EI G+GP ++ LLQ FG V+ ++ +S E L +++GIS+++A IY Sbjct: 611 GGGQLEEIPGVGPKKRARLLQRFGGVRGVAAASVEDLLTVDGISRELAEDIYRALR 666 >gi|312139598|ref|YP_004006934.1| excinuclease ABC subunit c uvrc [Rhodococcus equi 103S] gi|325676727|ref|ZP_08156401.1| excinuclease ABC subunit C [Rhodococcus equi ATCC 33707] gi|311888937|emb|CBH48250.1| excinuclease ABC subunit C UvrC [Rhodococcus equi 103S] gi|325552509|gb|EGD22197.1| excinuclease ABC subunit C [Rhodococcus equi ATCC 33707] Length = 694 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 184/660 (27%), Positives = 295/660 (44%), Gaps = 61/660 (9%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTCTEV 67 PGVY+ D GRV+YVGKA +L+ R+ SY ++ R M++ ++ +TV TEV Sbjct: 2 APGVYKFRDPHGRVIYVGKAKSLRSRLNSYFADVSSLHPRTRQMVTTAGSVEWTVVSTEV 61 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EAL LE N IK PRFN+ RDDK++P + +T + P L+ +R YFGP++ Sbjct: 62 EALQLEYNWIKEFDPRFNVRYRDDKTYPVLAVTLNEEYPRLFVYRGPRRKGVRYFGPYSH 121 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 A+ +T++ L R F R+C+ VF+ RPCLL I +CS PC G +S+ ++ E V Sbjct: 122 AWAIRETLDLLLRVFPARTCSAGVFKRHNQIGRPCLLGYIDKCSAPCVGRVSAAEHREIV 181 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR--- 241 + FLSG L ++ M +A D+E+A RD + AL + Sbjct: 182 EDFCDFLSGRTDRLVRQLETRMQEAAEDLDFETAARLRDDVGALKKALEKQAVVLGDGTD 241 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQIL--------------S 287 D + ++ +Q G+ RG + ++ + + Sbjct: 242 ADLVAFASDELEVAVQVFHVRGGRVRGQRGWVVEKAGDVIERDAVAADAGAESELALLVE 301 Query: 288 YFLRQFYTD---------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVP 332 FL QFY + P +L+ + L+ G VK+ VP Sbjct: 302 QFLTQFYGEQAALSDSGAAADQPTNAVPREVLVPALPRDVEGLQQWLGGLRGSSVKLRVP 361 Query: 333 KQGEKRKIIEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNS 388 ++G+K+ + E NA + Q S L+ + L P RIE D S Sbjct: 362 QRGDKKALAETVERNAKEALAQHKLRRAGDFTSRSAALQGIQEALDLDSAPLRIECVDIS 421 Query: 389 HIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQ------ 441 H+ G V +VV + K+ YR + + + DD A + V RRF + Sbjct: 422 HVQGTDVVASLVVFEDGLPRKSDYRHYAIREAAGDGRSDDVASIAEVTRRRFLRHNRDVA 481 Query: 442 -------LIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITI 494 + E + F P++ ++DGG Q++AA VL +L V + + + Sbjct: 482 AGGGADGGDQAPEAALDPQTGRPRRFAYPPNLFVVDGGSPQVNAAAEVLDELGVTD-VAV 540 Query: 495 ISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAA 553 I +AK + E + + + ++L LY +QR+RDEAHRFAIT HR +R + Sbjct: 541 IGLAKRLE-----EVWVPGEEDPVILPRTSESLYLLQRIRDEAHRFAITFHRSKRSRRMT 595 Query: 554 YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 S LD + G+G R+ L+ FG+V + ++ E + ++ GI A + + S Sbjct: 596 ASALDSVRGLGETRRTALVTHFGSVAKLREATVEEITAVPGIGVATAQAVLAALAEPQSD 655 >gi|257866430|ref|ZP_05646083.1| excinuclease ABC subunit C [Enterococcus casseliflavus EC30] gi|257873054|ref|ZP_05652707.1| excinuclease ABC subunit C [Enterococcus casseliflavus EC10] gi|257800388|gb|EEV29416.1| excinuclease ABC subunit C [Enterococcus casseliflavus EC30] gi|257807218|gb|EEV36040.1| excinuclease ABC subunit C [Enterococcus casseliflavus EC10] Length = 596 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 180/620 (29%), Positives = 298/620 (48%), Gaps = 45/620 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D +++YVGKA L+ R++SY ++ T + ++ +IN+ + VT + Sbjct: 12 LPDQPGCYLMKDKNNKIIYVGKAKILKNRVRSYFTGSHDT-KTERLVQEINDFEYVVTES 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 EALLLE N+I++ KP++NI+L+DDKS+P+I +T K + P L R YFGP+ Sbjct: 71 NTEALLLEINLIQKNKPKYNIMLKDDKSYPFIKVT-KERYPRLIITRKVLKDGALYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 A +T L R F LR C + RPCL + + +C P + + Y + V Sbjct: 130 PDARAANETKRVLDRLFPLRKCG----PSQKRPCLYYHLGQCVCPYVNNVDPKDYQKIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 + K F GG+ ++ + + M +A ++E A RD++ A+ + Sbjct: 186 QVKHFFHGGHVDILKDLKEKMGEAIETLEFERAAELRDQIQAIDTVMTRQKMTLTDLMDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +E+ + + P+ Sbjct: 246 DVFGYSVDKGWMCVQVFFIRQGKLIEREVSLFPFYNEADEDFLTFVGQFYQKNEHFIPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358 + + + + L + K + P++G+K+K+++ A NA + QK T Sbjct: 306 VFVPQNVDAAPLEALLETK-------VLQPQRGDKKKLVDLANKNARIALAQKFALIERT 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E + + + RIE +DNSHIMG V MVV + K+ YRK+ + Sbjct: 359 EERTIGAVDRLGEAMGIATP-YRIEAFDNSHIMGTDPVSAMVVFVDGKPFKDDYRKYKIR 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + DD M+ V+ RR+S+++K +PD++I+DGGK Q+ A Sbjct: 418 TA--QGGDDYGSMQEVIYRRYSRVLKEN--------------LPFPDLIIIDGGKAQVGA 461 Query: 479 AQGVL-KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 AQ VL +L ++ I + + K K E F + + + L + +QR++DE Sbjct: 462 AQEVLYNQLGLD--IPVAGLVKNNKHKTS-ELIFGEFLDPIQLERNSVEFFLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R K ++S LDEI G+GP RK+ L+++F ++K I +S E + GI Sbjct: 519 HRFAITFHRQLRSKNSFSSKLDEIPGLGPKRKQQLMKTFKSLKNIQAASVEEIQQA-GIP 577 Query: 597 KKIACKIYNHFHKNTSHTPT 616 K +A I + PT Sbjct: 578 KAVAETILAKL--GDQNQPT 595 >gi|293570973|ref|ZP_06682017.1| excinuclease ABC, C subunit [Enterococcus faecium E980] gi|291608957|gb|EFF38235.1| excinuclease ABC, C subunit [Enterococcus faecium E980] Length = 592 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 187/613 (30%), Positives = 309/613 (50%), Gaps = 40/613 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY +++T + ++S+I + + VT + Sbjct: 12 LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFTGSHNT-KTERLVSEIEDFEYIVTES 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EALLLE N+IK+ P++NI+L+DDK++P++ IT+ K P L R + YFGP+ Sbjct: 71 NIEALLLEINLIKKNDPKYNIMLKDDKTYPFLKITN-EKYPRLVITRKVLKDKALYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 V A +T L R F LR C S + PCL + + +C P ++ + Y + V Sbjct: 130 PDVGAANETKKILDRLFPLRKCKPSQTKE---PCLYYHLGQCLCPYYFDVDPKVYTKIVD 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E K FL+GG+ ++ +I + M +A ++E A +RD++ A+ I Sbjct: 187 EVKNFLNGGHEKIESEIHQKMEKAAENMEFEKAAEYRDQIRAIETIMTRQKMTNTDLLDR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +E+ + + P+ Sbjct: 247 DVFGYAIDKGWMCVQVFFVRQGKLIERDVSMFPFYNEAEEDFLTYIGQFYQENEHFIPKE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 +L+ + ++ S+ + K + PK+GEK+K++E A NA + Sbjct: 307 VLIPDTIDKPSVEALLDTK-------VLQPKRGEKKKLVELANKNASVALNERFDLIARK 359 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + ++ +P RIE +DNS+IMG + V MVV + K +YRK+ + Sbjct: 360 QERTIGAVERLGNAMNIPTP-IRIESFDNSNIMGTNPVAAMVVFIDGKPAKKEYRKYKIK 418 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V DD A MR V+ RR+S++I+ PD++++DGGKGQ+ Sbjct: 419 T--VNGPDDYASMREVIYRRYSRVIREG--------------LPLPDLILIDGGKGQVDV 462 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ VL + + I I +AK K E F + L P + +QR++DE H Sbjct: 463 AKDVL-ENQLGIDIPIAGMAKNDKHKT-NELLFGTDLAVVPLERNSPEFFLLQRVQDEVH 520 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ R K ++ S LDEI G+GP RK++LL+ F ++K I+ ++ E L I G+ K Sbjct: 521 RFAITFHRQLRSKNSFASRLDEIEGLGPKRKKMLLKEFKSLKNITAATIEELQEI-GLPK 579 Query: 598 KIACKIYNHFHKN 610 +A +++ H+ Sbjct: 580 NVAQNVFDKLHQE 592 >gi|67923431|ref|ZP_00516909.1| Excinuclease ABC, C subunit [Crocosphaera watsonii WH 8501] gi|67854717|gb|EAM49998.1| Excinuclease ABC, C subunit [Crocosphaera watsonii WH 8501] Length = 611 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 206/621 (33%), Positives = 312/621 (50%), Gaps = 26/621 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +P PGVY M D G +LY+GK+ L+ R++SY NH+ RIT M+ Q+ NI F Sbjct: 5 QIKPLPNEPGVYLMRDHQGDILYIGKSKRLRSRVRSYFQPCQNHSPRITLMVQQVANIEF 64 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQ 118 VT TE EAL LEAN+IKR +P FN+LL+DDK +PY+ IT P ++ R + Sbjct: 65 IVTDTEAEALALEANLIKRHQPYFNVLLKDDKKYPYVCITWSENYPRIFITRKRRLNHQR 124 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 Y+GP+ + +T+ ++R F LR +F + RPCL + I RC G C G IS+E Sbjct: 125 DRYYGPYVDTHLLRQTLRLVKRVFPLRQRPQPLF--KDRPCLNYDIGRCPGVCQGLISTE 182 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y + V + G L +K++ M A + ++E A RD++ A+ + Sbjct: 183 DYHKIVEKIAMIFQGRTEELLQKLSAQMELAASQLNFEKAAQVRDQIKAIQGLGIDQKVT 242 Query: 239 YNR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 D +L + CIQ G+ G FF T S + + + Sbjct: 243 LPDDTISRDAIALAADNTYTCIQLFQIRAGRLVGRLGFFADTVSGTPEGILQRVLEEHYL 302 Query: 295 TDKP--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 P P IL+ ET +L Q G KV I VP++ +K ++I NA Sbjct: 303 QVNPVEIPSEILVQYPLPETDILADWLGSQKGKKVNIIVPQKKQKAELIRLVERNAGYEL 362 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + + L+D K L IP RIE YD SHI G +AV VV + K Y Sbjct: 363 EKTKRHAQQNLLALEDLAKLLDLQTIPHRIEGYDISHIQGSNAVASQVVFIDGVPAKQSY 422 Query: 413 RKFNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 R + + D+ DD A + VL RRF E + +P+++++D Sbjct: 423 RHYKIKNPDITIGHSDDFASLAEVLGRRFRSYKNKSE-------TELLGLDDYPNLIMID 475 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQLS+ +L+ +N+ + +IS+AK + E F + + L + P + + Sbjct: 476 GGKGQLSSVINILETMNLFPGLKVISLAKKRE-----EIFLPGESKPLATHPEQPGVQLL 530 Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 +R+RDEAHRFA+T HR++R KK+ +S LD+I G+G R++ LL F ++ I +S E L Sbjct: 531 RRVRDEAHRFAVTFHRQQRLKKSRHSRLDDIPGLGFNRQKQLLAHFHSIDYIREASLEKL 590 Query: 590 ASIEGISKKIACKIYNHFHKN 610 + GI + +A +IYN+FH N Sbjct: 591 QEVSGIGQALATEIYNYFHPN 611 >gi|182418177|ref|ZP_02949477.1| excinuclease ABC, C subunit [Clostridium butyricum 5521] gi|237666265|ref|ZP_04526252.1| excinuclease ABC, C subunit [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377995|gb|EDT75535.1| excinuclease ABC, C subunit [Clostridium butyricum 5521] gi|237658355|gb|EEP55908.1| excinuclease ABC, C subunit [Clostridium butyricum E4 str. BoNT E BL5262] Length = 626 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 199/626 (31%), Positives = 331/626 (52%), Gaps = 21/626 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 + +P+ PGVY M + G ++YVGKA L+ R++ Y S NH+ ++ M+ I + Sbjct: 7 QLKILPDKPGVYLMKNSLGEIIYVGKAKVLKNRVRQYFQNSKNHSEKVKAMVKNIAEFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK+ P++NI L+DDK +P+I IT P ++ R+ + Sbjct: 67 IVTDSEMEALILECNLIKKHSPKYNISLKDDKFYPFIKITTNEDFPRVFITRNFAKDGNR 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ + AV +TI +++ F LR+C +F + TRPCL + IK+C+ PC G IS + Sbjct: 127 YFGPYPNAGAVHETIKLIRKIFPLRTCKKLIFENGKHTRPCLNYHIKKCNAPCEGHISKD 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + E LSG + +L K+ +M +A++ ++E A RD++ A+ I Sbjct: 187 EYKRMIDEIIDVLSGRDKSLINKLKNDMQEASMNLEFEKAASFRDKILAIESIAEKQKVF 246 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 N D ++Y ++ +Q F G+ G F L+ + ++ I+S F+ FY Sbjct: 247 KSQDNDEDFINIYKDEKDCAVQVFFLRDGKVTGRENFILENSAYEDDSVIISQFIVSFYG 306 Query: 296 DKPCPENILLSEEA--EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH---- 349 P + + ++ LE + G KV + VP +GEK++++E NA Sbjct: 307 GTPKVPKNIYIPLSNDDDNDALEEFLTIKRGSKVFVKVPIKGEKKEMLELVKSNAKVTLD 366 Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 + + L + +++ L++ + L +P RIE YD S+I G +VG M+V + Sbjct: 367 QFKDKILRDKEINRLCLEEIQELLELDSMPIRIEAYDISNIQGVDSVGSMIVFEDGKAKN 426 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVI 468 + YR+F + VK +D MR +LERRFS +K +E K F ++PD+++ Sbjct: 427 SDYRRFRIKT--VKNANDYDSMREILERRFSHGLKEIKEIQERQLKFSSGKFSNFPDLIM 484 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 +DGGKGQ++ A VL+KL + I + + K + + + L++N ++ Sbjct: 485 MDGGKGQVNVALEVLQKLGI--NIPVCGLVKDDHHATRG---IIYNNKELIINRSSNLMQ 539 Query: 529 FIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 I+R++DE HRFAIT HR R KK +S LD+I IG R+ LL FG++ I +++ E Sbjct: 540 MIRRVQDEVHRFAITYHRSLRDKKTLHSILDDIPNIGQKRRMALLMKFGSIDNIKKATVE 599 Query: 588 TLASIEGISKKIACKIYNHFHKNTSH 613 L E I K A I +F + + Sbjct: 600 ELLETESIDNKAATSIMAYFKNHEQN 625 >gi|293568796|ref|ZP_06680110.1| excinuclease ABC, C subunit [Enterococcus faecium E1071] gi|294617529|ref|ZP_06697159.1| excinuclease ABC, C subunit [Enterococcus faecium E1679] gi|291588513|gb|EFF20347.1| excinuclease ABC, C subunit [Enterococcus faecium E1071] gi|291596135|gb|EFF27398.1| excinuclease ABC, C subunit [Enterococcus faecium E1679] Length = 592 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 186/613 (30%), Positives = 309/613 (50%), Gaps = 40/613 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY +++T + ++S+I + + VT + Sbjct: 12 LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFTGSHNT-KTERLVSEIEDFEYIVTES 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EALLLE N+IK+ P++NI+L+DDK++P++ IT+ K P L R + YFGP+ Sbjct: 71 NIEALLLEINLIKKNDPKYNIMLKDDKTYPFLKITN-EKYPRLVITRKVLKDKALYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 V A +T L R F LR C S + PCL + + +C P ++ + Y + V Sbjct: 130 PDVGAANETKKILDRLFPLRKCKPSQTKE---PCLYYHLGQCLCPYYFDVDPKVYTKIVD 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E K FL+GG+ ++ +I + M +A ++E A +RD++ A+ I Sbjct: 187 EVKNFLNGGHEKIESEIHQKMEKAAENMEFEKAAEYRDQIRAIETIMTRQKMTNTDLLDR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +E+ + + P+ Sbjct: 247 DVFGYAIDKGWMCVQVFFVRQGKLIERDVSMFPFYNEAEEDFLTYLGQFYQENEHFIPKE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 +L+ + ++ S+ + K + PK+GEK+K++E A NA + Sbjct: 307 VLIPDTIDKPSVEALLATK-------VLQPKRGEKKKLVELASKNASVALNERFDLIARK 359 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + ++ +P RIE +DNS+IMG + V MVV + + +YRK+ + Sbjct: 360 QERTIGAVERLGNAMNIPTP-IRIESFDNSNIMGTNPVAAMVVFIDGKPARKEYRKYKIK 418 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V DD A MR V+ RR+S++I+ PD++++DGGKGQ+ Sbjct: 419 T--VNGPDDYASMREVIYRRYSRVIREG--------------LPLPDLILIDGGKGQVDV 462 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ VL + + I I +AK K E F + L P + +QR++DE H Sbjct: 463 AKDVL-ENQLGIDIPIAGMAKNDKHKT-NELLFGTDLAVVPLERNSPEFFLLQRIQDEVH 520 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ R K ++ S LDEI G+GP RK++LL+ F ++K I+ ++ E L I G+ K Sbjct: 521 RFAITFHRQLRSKNSFASRLDEIEGLGPKRKKMLLKEFKSLKNITAATTEELQEI-GLPK 579 Query: 598 KIACKIYNHFHKN 610 +A +++ H+ Sbjct: 580 NVAQNVFDKLHQE 592 >gi|257883967|ref|ZP_05663620.1| excinuclease ABC [Enterococcus faecium 1,231,501] gi|257819805|gb|EEV46953.1| excinuclease ABC [Enterococcus faecium 1,231,501] Length = 592 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 186/613 (30%), Positives = 309/613 (50%), Gaps = 40/613 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY +++T + ++S+I + + VT + Sbjct: 12 LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFTGSHNT-KTERLVSEIEDFEYIVTES 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EALLLE N+IK+ P++NI+L+DDK++P++ IT+ K P L R + YFGP+ Sbjct: 71 NIEALLLEINLIKKNDPKYNIMLKDDKTYPFLKITN-EKYPRLVITRKVLKDKALYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 V A +T L R F LR C S + PCL + + +C P ++ + Y + V Sbjct: 130 PDVGAANETKKILDRLFPLRKCKPSQTKE---PCLYYHLGQCLCPYYFDVDPKVYTKIVD 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E K FL+GG+ ++ +I + M +A ++E A +RD++ A+ I Sbjct: 187 EVKNFLNGGHEKIESEIHQKMEKAAENMEFEKAAEYRDQIRAIETIMTRQKMTNTDLLDR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +E+ + + P+ Sbjct: 247 DVFGYAIDKGWMCVQVFFVRQGKLIERDVSMFPFYNEAEEDFLTYIGQFYQENEHFIPKE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 +L+ + ++ S+ + K + PK+GEK+K++E A NA + Sbjct: 307 VLIPDTIDKPSVEALLATK-------VLQPKRGEKKKLVELANKNASVALNERFDLIARK 359 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + ++ +P RIE +DNS+IMG + V MVV + + +YRK+ + Sbjct: 360 QERTIGAVERLGNAMNIPTP-IRIESFDNSNIMGTNPVAAMVVFIDGKPARKEYRKYKIK 418 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V DD A MR V+ RR+S++I+ PD++++DGGKGQ+ Sbjct: 419 T--VNGPDDYASMREVIYRRYSRVIREG--------------LPLPDLILIDGGKGQVDV 462 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ VL + + I I +AK K E F + L P + +QR++DE H Sbjct: 463 AKDVL-ENQLGIDIPIAGMAKNDKHKT-NELLFGTDLAVIPLERNSPEFFLLQRIQDEVH 520 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ R K ++ S LDEI G+GP RK++LL+ F ++K I+ ++ E L I G+ K Sbjct: 521 RFAITFHRQLRSKNSFASRLDEIEGLGPKRKKMLLKEFKSLKNITAATTEELQEI-GLPK 579 Query: 598 KIACKIYNHFHKN 610 +A +++ H+ Sbjct: 580 NVAQNVFDKLHQE 592 >gi|226311267|ref|YP_002771161.1| excinuclease ABC subunit C [Brevibacillus brevis NBRC 100599] gi|254764926|sp|C0Z9I7|UVRC_BREBN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|226094215|dbj|BAH42657.1| excinuclease ABC subunit C [Brevibacillus brevis NBRC 100599] Length = 593 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 181/613 (29%), Positives = 292/613 (47%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M + +G ++YVGKA L+ R++SY + H + ++S+I + + V + Sbjct: 12 LPDKPGCYLMKNASGEIIYVGKAKVLKNRVRSYFTGS-HNGKTQLLVSEIVDFEYIVVSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK PR+N++LRDDK++PYI IT+ P L R + YFGP+ Sbjct: 71 AIEALILECNLIKEHDPRYNVMLRDDKTYPYIKITN-EAQPRLEITRKVLKDKAKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + L R + LR C + + CL + + +C PC E+S+E+ V Sbjct: 130 PNAGDASEVKKLLDRLYPLRKCRNMP----KQVCLYYHLGQCLAPCVYEVSAEENQRLVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 + +FL GG+ +K+ + M QA ++E A +RD++ ++ + + Sbjct: 186 QISQFLDGGHEEMKQTLTEKMLQAAENMEFERAKEYRDQIKSIEAVMEKQKITFTDTIDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D K CIQ + G+ T T + + P+ Sbjct: 246 DIIGFAVEKGWMCIQVFYMRKGKMIERQTTSFPYYGSETEDFMSYVSQFYYDKQNALPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 ILL +E+E L E K + PK+G+K ++++ A NA + Sbjct: 306 ILLPQESEPELLAEWLGIKVHA-------PKRGKKHELVKMATENARIALQEKFALMSKD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + + + +P RIE +DNS+I G V M+V + K +YRKF + Sbjct: 359 DARTVQAVHNLGHILGIPVP-HRIEAFDNSNIQGTEPVSAMIVFTDGRPDKKEYRKFKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+S+L+K + PD++++DGGKGQ+SA Sbjct: 418 T--VEGPDDYGSMREVVRRRYSRLLKENQ--------------PMPDLIVIDGGKGQISA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A VL+ +L + I + +AK K + E + L Y +QR++DE Sbjct: 462 AMDVLENELGLY--IPVCGLAKDEKHRTAQ-LMYGDPPEPVNLRRDSYEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRF IT HR+ R K S LDEI GIG R++LL FG++K + ++ E + GI Sbjct: 519 HRFVITFHRQSRTKTMLSSQLDEIPGIGEKRRKLLFSHFGSLKKMREATVEDFRQL-GIG 577 Query: 597 KKIACKIYNHFHK 609 K+A +I H K Sbjct: 578 DKLAKEIIGHLRK 590 >gi|257876043|ref|ZP_05655696.1| excinuclease ABC subunit C [Enterococcus casseliflavus EC20] gi|257810209|gb|EEV39029.1| excinuclease ABC subunit C [Enterococcus casseliflavus EC20] Length = 596 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 179/619 (28%), Positives = 295/619 (47%), Gaps = 43/619 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D +++YVGKA L+ R++SY ++ T + ++ +IN+ + VT + Sbjct: 12 LPDQPGCYLMKDKNNKIIYVGKAKILKNRVRSYFTGSHDT-KTERLVQEINDFEYVVTES 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 EALLLE N+I++ KP++NI+L+DDKS+P+I +T K + P L R YFGP+ Sbjct: 71 NTEALLLEINLIQKNKPKYNIMLKDDKSYPFIKVT-KERYPRLIITRKVLKDGALYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 A +T L R F LR C + RPCL + + +C P + + Y + V Sbjct: 130 PDARAANETKRVLDRLFPLRKCG----PSQKRPCLYYHLGQCVCPYVNNVDPKDYQKIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 + K F GG+ ++ + + M +A ++E A RD++ A+ + Sbjct: 186 QVKHFFHGGHVDILKDLKEKMGEAIETLEFERAAELRDQIQAIDTVMTRQKMTLTDLMDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +E+ + + P+ Sbjct: 246 DVFGYSVDKGWMCVQVFFIRQGKLIEREVSLFPFYNEADEDFLTFVGQFYQKNEHFIPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358 + + + + L + K + P++G+K+K+++ A NA + QK T Sbjct: 306 VFVPQNVDAAPLEALLETK-------VLQPQRGDKKKLVDLANKNARIALAQKFALIERT 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E + + + RIE +DNSHIMG V MVV + K+ YRK+ + Sbjct: 359 EERTIGAVDRLGEAMGIATP-YRIEAFDNSHIMGTDPVSAMVVFVDGKPFKDDYRKYKIR 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + DD M+ V+ RR+S+++K +PD++I+DGGK Q+ A Sbjct: 418 TA--QGGDDYGSMQEVIYRRYSRVLKEN--------------LPFPDLIIIDGGKAQVGA 461 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 AQ VL + I + + K K E F + + + L + +QR++DE H Sbjct: 462 AQEVLHN-QLGLDIPVAGLVKNNKHKTS-ELIFGEFLDPIQLERNSVEFFLLQRIQDEVH 519 Query: 539 RFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ R K ++S LDEI G+GP RK+ L+++F ++K I +S E + GI K Sbjct: 520 RFAITFHRQLRSKNSFSSKLDEIPGLGPKRKQQLMKTFKSLKNIQAASVEEIQQA-GIPK 578 Query: 598 KIACKIYNHFHKNTSHTPT 616 +A I + PT Sbjct: 579 AVAETILAKL--GDQNQPT 595 >gi|294614395|ref|ZP_06694311.1| excinuclease ABC, C subunit [Enterococcus faecium E1636] gi|291592703|gb|EFF24296.1| excinuclease ABC, C subunit [Enterococcus faecium E1636] Length = 592 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 186/613 (30%), Positives = 309/613 (50%), Gaps = 40/613 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY +++T + ++S+I + + VT + Sbjct: 12 LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFTGSHNT-KTERLVSEIEDFEYIVTES 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EALLLE N+IK+ P++NI+L+DDK++P++ IT+ K P L R + YFGP+ Sbjct: 71 NIEALLLEINLIKKNDPKYNIMLKDDKTYPFLKITN-EKYPRLVITRKVLKDKALYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 V A +T L R F LR C S + PCL + + +C P ++ + Y + V Sbjct: 130 PDVGAANETKKILDRLFPLRKCKPSQTKE---PCLYYHLGQCLCPYYFDVDPKVYTKIVD 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E K FL+GG+ ++ +I + M +A ++E A +RD++ A+ I Sbjct: 187 EVKNFLNGGHEKIESEIHQKMEKAAENMEFEKAAEYRDQIRAIETIMTRQKMTNTDLLDR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +E+ + + P+ Sbjct: 247 DVFGYAIDKGWMCVQVFFVRQGKLIERDVSMFPFYNEAEEDFLTYIGQFYQENEHFIPKE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 +L+ + ++ S+ + K + PK+GEK+K++E A NA + Sbjct: 307 VLIPDTIDKPSVEALLATK-------VLQPKRGEKKKLVELANKNASVALNERFDLIARK 359 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + ++ +P RIE +DNS+IMG + V MVV + + +YRK+ + Sbjct: 360 QERTIGAVERLGNAMNIPTP-IRIESFDNSNIMGTNPVAAMVVFIDGKPARKEYRKYKIK 418 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V DD A MR V+ RR+S++I+ PD++++DGGKGQ+ Sbjct: 419 T--VNGPDDYASMREVIYRRYSRVIREG--------------LPLPDLILIDGGKGQVDV 462 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ VL + + I I +AK K E F + L P + +QR++DE H Sbjct: 463 AKDVL-ENQLGIDIPIAGMAKNDKHKT-NELLFGTDLAVVPLERNSPEFFLLQRIQDEVH 520 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ R K ++ S LDEI G+GP RK++LL+ F ++K I+ ++ E L I G+ K Sbjct: 521 RFAITFHRQLRSKNSFASRLDEIEGLGPKRKKMLLKEFKSLKNITAATTEELQEI-GLPK 579 Query: 598 KIACKIYNHFHKN 610 +A +++ H+ Sbjct: 580 NVAQNVFDKLHQE 592 >gi|290967950|ref|ZP_06559500.1| excinuclease ABC, C subunit [Megasphaera genomosp. type_1 str. 28L] gi|290782089|gb|EFD94667.1| excinuclease ABC, C subunit [Megasphaera genomosp. type_1 str. 28L] Length = 612 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 193/621 (31%), Positives = 302/621 (48%), Gaps = 37/621 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 Q+P PGVY + GR++YVGKA L+ R++SY+ + ++ M+ Q ++ Sbjct: 9 KIRQLPLQPGVYLWKNEQGRIIYVGKAVALRNRVRSYLRQDARRSPKVAAMMRQAADVET 68 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V E+EALLLE +IK+ PR+NI+LRDDK++PYI +T + ++ R Sbjct: 69 MVVANEMEALLLENTLIKKHHPRYNIMLRDDKTYPYIKVTVQEPYARVFMTRRMIRDGAR 128 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGPFA AV + I LQRTF LRSC + RPCL + ++ C PC +I+ Y Sbjct: 129 YFGPFADAQAVHRIITLLQRTFQLRSCRTM---RQDRPCLQYHLQHCPAPCAQKITQADY 185 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + V +A L G + +L + MN+A + ++E A +RD++ A++ IQ Sbjct: 186 AQAVRQALAILEGRDKHLVVTLTAKMNRAAARMEFEKAAAYRDQIQAVTVIQGQQHVTQV 245 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 MD +L C+Q G+ G TF L+ +E +++ L Q+Y Sbjct: 246 GGGDMDVVALVSEAGQTCVQVYIVRQGRLLGRETFSLENGAEERESRLTEVVLDQYYAAA 305 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHT 353 ++ + K+ G V+IT+P +G K+K++ A N + Sbjct: 306 GEIPAEIVVAALAHPRAYAERWRKRCGRSVRITIPLRGMKKKLLTMAEENGRLLLAQRRL 365 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 Q ++ + F LP +P R+E +D SH G V MVV K +YR Sbjct: 366 QWQHDRDKTMGAVEALAQIFDLPRLPLRMECFDISHTQGLETVASMVVFENGRPAKREYR 425 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 +F L DD M ++ RR+ PD++++DGG Sbjct: 426 RFKLQTVQG-KPDDFKSMAEIMRRRY-----------------GEKDWPVPDLIVIDGGL 467 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 GQL AA V+++ E +IS+AK + E F ++L+ P L +Q + Sbjct: 468 GQLHAALPVIRQAGCEA--PVISLAKRLE-----EVFTEHTTHPVILSHHTPELQLLQAI 520 Query: 534 RDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDE+HRFAIT HR R K+A S LD I GIGP R+R L Q+F ++ + ++ ETLA++ Sbjct: 521 RDESHRFAITYHRTLRGKRALVSILDHIEGIGPKRRRALWQAFKNLEEMKQADVETLAAV 580 Query: 593 EGISKKIACKIYNHFHKNTSH 613 G+++++A +Y F T Sbjct: 581 PGMNRQVAENVYQFFRLGTDE 601 >gi|257897921|ref|ZP_05677574.1| excinuclease ABC [Enterococcus faecium Com15] gi|257835833|gb|EEV60907.1| excinuclease ABC [Enterococcus faecium Com15] Length = 592 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 186/613 (30%), Positives = 309/613 (50%), Gaps = 40/613 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY +++T + ++S+I + + VT + Sbjct: 12 LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFTGSHNT-KTERLVSEIEDFEYIVTES 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EALLLE N+IK+ P++NI+L+DDK++P++ IT+ K P L R + YFGP+ Sbjct: 71 NIEALLLEINLIKKNDPKYNIMLKDDKTYPFLKITN-EKYPRLVITRKVLKDKALYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 V A +T L R F LR C S + PCL + + +C P ++ + Y + V Sbjct: 130 PDVGAANETKKILDRLFPLRKCKPSQTKE---PCLYYHLGQCLCPYYFDVDPKVYTKIVD 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E K FL+GG+ ++ +I + M +A ++E A +RD++ A+ I Sbjct: 187 EVKNFLNGGHEKIESEIHQKMEKAAENMEFEKAAEYRDQIRAIETIMTRQKMTNTDLLDR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +E+ + + P+ Sbjct: 247 DVFGYAIDKGWMCVQVFFVRQGKLIERDVSMFPFYNEAEEDFLTYIGQFYQENEHFIPKE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 +L+ + ++ S+ + K + PK+GEK+K++E A NA + Sbjct: 307 VLIPDTIDKPSVEALLDTK-------VLQPKRGEKKKLVELANKNASVALNERFDLIARK 359 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + ++ +P RIE +DNS+IMG + V MVV + + +YRK+ + Sbjct: 360 QERTIGAVERLGNAMNIPTP-IRIESFDNSNIMGTNPVAAMVVFIDGKPARKEYRKYKIK 418 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V DD A MR V+ RR+S++I+ PD++++DGGKGQ+ Sbjct: 419 T--VNGPDDYASMREVIYRRYSRVIREG--------------LPLPDLILIDGGKGQVDV 462 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ VL + + I I +AK K E F + L P + +QR++DE H Sbjct: 463 AKDVL-ENQLGIDIPIAGMAKNDKHRT-NELLFGTDLAVVPLERNSPEFFLLQRVQDEVH 520 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ R K ++ S LDEI G+GP RK++LL+ F ++K I+ ++ E L I G+ K Sbjct: 521 RFAITFHRQLRSKNSFASRLDEIEGLGPKRKKMLLKEFKSLKNITAATIEELQEI-GLPK 579 Query: 598 KIACKIYNHFHKN 610 +A +++ H+ Sbjct: 580 NVAQNVFDKLHQE 592 >gi|325694643|gb|EGD36551.1| excinuclease ABC subunit C [Streptococcus sanguinis SK150] Length = 609 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 171/615 (27%), Positives = 293/615 (47%), Gaps = 41/615 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGAIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + + C + + +C ++ S+ + Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNPP----EKVCFYYHLGQCKAHSICQVDSQYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E E FL G + + E + M A ++E A +RD + ++ ++ + Sbjct: 182 ELTQEVAAFLKGQDDQIIEDLRGKMAVAAQAMEFEKAAEYRDLIQSIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P IL+ + +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 KPNEILIPADIDEEAVRVLVDTKVLK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSIEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V++RR+S++I++ + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F + + L+ + +QR++ Sbjct: 458 QVNVAKEVIQE-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDQIVEV- 574 Query: 594 GISKKIACKIYNHFH 608 G+ + +A + + Sbjct: 575 GVPRAVAEAVREKLN 589 >gi|261208741|ref|ZP_05923178.1| excinuclease ABC [Enterococcus faecium TC 6] gi|289565575|ref|ZP_06446022.1| excinuclease ABC, C subunit [Enterococcus faecium D344SRF] gi|293553118|ref|ZP_06673756.1| excinuclease ABC, C subunit [Enterococcus faecium E1039] gi|260077243|gb|EEW64963.1| excinuclease ABC [Enterococcus faecium TC 6] gi|289162657|gb|EFD10510.1| excinuclease ABC, C subunit [Enterococcus faecium D344SRF] gi|291602709|gb|EFF32923.1| excinuclease ABC, C subunit [Enterococcus faecium E1039] Length = 592 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 186/613 (30%), Positives = 309/613 (50%), Gaps = 40/613 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY +++T + ++S+I + + VT + Sbjct: 12 LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFTGSHNT-KTERLVSEIEDFEYIVTES 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EALLLE N+IK+ P++NI+L+DDK++P++ IT+ K P L R + YFGP+ Sbjct: 71 NIEALLLEINLIKKNDPKYNIMLKDDKTYPFLKITN-EKYPRLVITRKVLKDKALYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 V A +T L R F LR C S + PCL + + +C P ++ + Y + V Sbjct: 130 PDVGAANETKKILDRLFPLRKCKPSQTKE---PCLYYHLGQCLCPYYFDVDPKVYAKIVD 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E K FL+GG+ ++ +I + M +A ++E A +RD++ A+ I Sbjct: 187 EVKNFLNGGHEKIESEIHQKMEKAAENMEFEKAAEYRDQIRAIETIMTRQKMTNTDLLDR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +E+ + + P+ Sbjct: 247 DVFGYAIDKGWMCVQVFFVRQGKLIERDVSMFPFYNEAEEDFLTYLGQFYQENEHFIPKE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 +L+ + ++ S+ + K + PK+GEK+K++E A NA + Sbjct: 307 VLIPDTIDKPSVEALLATK-------VLQPKRGEKKKLVELANKNASVALNERFDLIARK 359 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + ++ +P RIE +DNS+IMG + V MVV + + +YRK+ + Sbjct: 360 QERTIGAVERLGNAMNIPTP-IRIESFDNSNIMGTNPVAAMVVFIDGKPARKEYRKYKIK 418 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V DD A MR V+ RR+S++I+ PD++++DGGKGQ+ Sbjct: 419 T--VNGPDDYASMREVIYRRYSRVIREG--------------LPLPDLILIDGGKGQVDV 462 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ VL + + I I +AK K E F + L P + +QR++DE H Sbjct: 463 AKDVL-ENQLGIDIPIAGMAKNDKHKT-NELLFGTDLAVVPLERNSPEFFLLQRIQDEVH 520 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ R K ++ S LDEI G+GP RK++LL+ F ++K I+ ++ E L I G+ K Sbjct: 521 RFAITFHRQLRSKNSFASRLDEIEGLGPKRKKMLLKEFKSLKNITAATTEELQEI-GLPK 579 Query: 598 KIACKIYNHFHKN 610 +A +++ H+ Sbjct: 580 NVAQNVFDKLHQE 592 >gi|126657460|ref|ZP_01728616.1| excinuclease ABC subunit C [Cyanothece sp. CCY0110] gi|126621164|gb|EAZ91877.1| excinuclease ABC subunit C [Cyanothece sp. CCY0110] Length = 610 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 201/622 (32%), Positives = 308/622 (49%), Gaps = 28/622 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +P PGVY M D G +LY+GK+ L+ R++SY + +H+ RI M+ Q+ N+ F Sbjct: 4 QIRTVPNEPGVYFMRDAQGDILYIGKSKQLRSRVRSYFQPSQDHSPRIALMVQQVANVEF 63 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQ 118 VT TE EAL LEAN+IK+ +P FN+LL+DDK +PYI IT P ++ R Sbjct: 64 IVTDTEAEALALEANLIKQHQPYFNVLLKDDKKYPYICITWSEAYPRIFITRKRRLNHKS 123 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 Y+GP+ + +T+ ++R F LR +F + RPCL + I RC G C G IS E Sbjct: 124 DRYYGPYVDTHLLRQTLRLVKRVFPLRQRPRPLF--KDRPCLNYDIGRCPGVCQGLISPE 181 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y V + G L +K++ M A + +E A RD++ A+ + Sbjct: 182 DYHIIVEKVAMIFQGRTEELLQKLSAQMELAASQLKFEQAGQIRDQIKAIKGLGIDQKVT 241 Query: 239 YNR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 D +L ++ CIQ G+ G FF T S T IL L + Y Sbjct: 242 LPDDTISRDAIALAADETYTCIQLFQIRAGRLVGRLGFFADTVSG-TPESILQRVLEEHY 300 Query: 295 TDKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 P IL+ ET +L + G KV I VP++ +K ++I NA Sbjct: 301 LQVDSVEVPSEILVQYPLPETDILRDWLGNKKGKKVNIIVPQKQQKAELIRLVERNAGYE 360 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 + + L+D + LP +P RIE YD SHI G + V VV + K Sbjct: 361 LENTKRHAQQNLLALEDLAQLLDLPSLPHRIEGYDISHIQGSNPVASQVVFIDGVPAKQS 420 Query: 412 YRKFNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 YR + + + DD A + VL RRF K + +PD++++ Sbjct: 421 YRHYKIKNPKITIGHSDDFASLAEVLSRRFRSYQNK-------SKTELSKLEDYPDLIMI 473 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQLS+ +L+ +N+ + +IS+AK + E F + + + + P + Sbjct: 474 DGGKGQLSSVTEILESMNLIPPLKVISLAKKRE-----EIFLPGESKPVTSHPEQPGVQL 528 Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 ++R+RDEAHRFA+T HR++R KK+ +S L++I G+G R++ LL F ++ I +S E Sbjct: 529 LRRVRDEAHRFAVTFHRQQRLKKSRHSRLEDIPGLGFHRQKQLLAHFHSIDYIREASIEK 588 Query: 589 LASIEGISKKIACKIYNHFHKN 610 L + GI + +A +IY++FH N Sbjct: 589 LQEVSGIGQALATEIYDYFHPN 610 >gi|320156830|ref|YP_004189209.1| excinuclease ABC subunit C [Vibrio vulnificus MO6-24/O] gi|319932142|gb|ADV87006.1| excinuclease ABC subunit C [Vibrio vulnificus MO6-24/O] Length = 588 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 198/607 (32%), Positives = 314/607 (51%), Gaps = 31/607 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M + V+YVGKA +L+KR+ SY + + ++S I I TVT TE EAL+LE Sbjct: 1 MYNAEAVVIYVGKAKDLKKRLSSYFRKKVDSEKTKALVSNIAKIDVTVTHTETEALILEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK+ P++N+LLRDDKS+PYI ++ H+ P + HR + +G YFGP+ AV +T Sbjct: 61 NYIKQYLPKYNVLLRDDKSYPYIFLS-AHRHPRVSLHRGAKKRKGEYFGPYPDSGAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYMEFVHEAKKFLSG 193 ++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC IS Y E V + FL G Sbjct: 120 LHLIQKIFPVRQCEDTVYANRTRPCLMYQIGRCAGPCVSSVISDVDYAELVGYLRLFLQG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHN 250 ++ + E + + M A+ + +E A RD++ A+ +Q + MD Sbjct: 180 KDNQVLELLVQKMEIASQQLKFEDAAKFRDQIQAIRRVQEQQYVSEDSQEDMDVLGFAQE 239 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP----CPENILLS 306 +ACI G+ G+ + F K + ++ FL Q+Y P I+L+ Sbjct: 240 NGIACIHILMIRQGKVLGSRSHFPKIPQNTNAQEVFDSFLTQYYLSHNEARTIPSRIILN 299 Query: 307 EEAEET-SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365 +E ++++ G KV+ G + + ++ + NA + T K++ +++ Sbjct: 300 QELAADVEAIQLALSDVAGRKVQFHTSPSGSRGRYLKLSNTNALTAMTTKINHKMTINQR 359 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 K A+ I R+E +D SH MG S + VV G VK +YR++N+ + Sbjct: 360 FKALRDVLAMDSIA-RMECFDISHTMGESTIASCVVFNSEGPVKQEYRRYNI--TGITGG 416 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD A M LERR+++ + E+ PDV+ +DGGKGQL+ A ++ + Sbjct: 417 DDYAAMGQALERRYAKQLDVEK---------------IPDVIFIDGGKGQLNRAHEIIAQ 461 Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 + R +I IAKG R G+E G+ L DP L+ IQ +RDE+H AI Sbjct: 462 YWGDWPKRPVMIGIAKGVTRKPGLETLITVDGDEFHLPSDDPALHLIQHIRDESHNHAIA 521 Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR +R K S L+ I G+GP R++ LL+ G ++ + R+S E +A + GIS +A Sbjct: 522 GHRAKRGKTRKTSALEGIEGVGPKRRQALLKYTGGLQELKRASVEEIAKVPGISHSLAEI 581 Query: 603 IYNHFHK 609 IY + Sbjct: 582 IYQALKQ 588 >gi|121594960|ref|YP_986856.1| excinuclease ABC subunit C [Acidovorax sp. JS42] gi|120607040|gb|ABM42780.1| Excinuclease ABC subunit C [Acidovorax sp. JS42] Length = 657 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 207/650 (31%), Positives = 316/650 (48%), Gaps = 55/650 (8%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PGVY+ D +LYVGKA NL+KR+ SY + RI HM+ +I + TV + Sbjct: 16 LPPLPGVYRYFDAQNVLLYVGKARNLKKRVSSYFSKQHGGTRIGHMVGRIARLETTVVRS 75 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITD-----------KHKIPALYKHRDS 114 E EALLLE N+IK L P++NIL RDDKS+PY+ IT P + +R + Sbjct: 76 EAEALLLENNLIKSLGPKYNILFRDDKSYPYLKITGVSAKDGTGDAPGQCYPRMAYYRGA 135 Query: 115 STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE 174 + YFGP+ AV+++I LQ+ F LR+C D+VF +RTRPCLL+QIKRCS PC G Sbjct: 136 VDKRHRYFGPYPGAWAVKESIQLLQKVFRLRTCEDTVFANRTRPCLLYQIKRCSAPCVGL 195 Query: 175 ISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234 IS Y V A+ L G L + + M K ++E A R+++ AL+ + + Sbjct: 196 ISPTAYAADVRSAESMLLGETQELLQTLEERMLAYAEKLEFEQAAEVRNQITALARVLHQ 255 Query: 235 NDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST---------- 281 +D ++ AC+ G++ G +F E+T Sbjct: 256 QAVETASDKDVDILAVKVAGGRACVNLAMVRGGRHLGDRPYFPVHVEEATGVFQLETRED 315 Query: 282 -----------------NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYG 324 AQIL+ F+ Q Y P P ++ SE + + +Q G Sbjct: 316 APDNLMVEEAGGLEQSVPAQILAAFIAQHYLGVPLPPTLITSEPVDPALVW--VLAQQTG 373 Query: 325 YKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPH---IPKR 381 + + + ++R +E A NA + L+ E S + + ++ L Sbjct: 374 VRATVVHQPREQRRIWLEMAEQNAQIQLARLLAEEGSQRARTRALSEALDLEAESLDDLT 433 Query: 382 IEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQ 441 IE +D SH G + VV + +YR+F + DD A MR VL RR+S+ Sbjct: 434 IECFDISHTAGEATQASCVVFHHHKMQSGEYRRF--KIEGITPGDDYAAMRQVLMRRYSK 491 Query: 442 LIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGP 501 + + + P PD+V++DGGKGQ+S A+ V ++L ++ I+ + KG Sbjct: 492 VAEAQREAGGAEVTNA---PRLPDLVLVDGGKGQVSMARDVFQELGLDIS-RIVGVEKGE 547 Query: 502 KRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--SPLD 558 R G+E+ G + + L L + ++RDEAHRFAIT R R K S L+ Sbjct: 548 GRKVGLEELVFADGRDKVYLGRDSAALMLVAQIRDEAHRFAITGMRAARAKVRVGGSRLE 607 Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 +I G+GP ++ LLQ FG V+ ++ +S + LA++EGIS +A +IY Sbjct: 608 DIPGVGPKKRARLLQRFGGVRGVADASVDDLATVEGISHDLAEEIYRALR 657 >gi|17230220|ref|NP_486768.1| excinuclease ABC subunit C [Nostoc sp. PCC 7120] gi|21264110|sp|Q8YTI9|UVRC_ANASP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|17131821|dbj|BAB74427.1| excinuclease ABC subunit C [Nostoc sp. PCC 7120] Length = 627 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 197/619 (31%), Positives = 307/619 (49%), Gaps = 29/619 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVT 63 ++P PGVY M D + R++Y+GK+ L+ R++SY N T RI M + I F VT Sbjct: 23 EIPPEPGVYFMRDGSDRIIYIGKSRKLRSRVRSYFREGYNKTERIATMAKLVTEIEFIVT 82 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQGSY 121 TE EAL LEAN+IK+ +P FN+LL+DDK +PY+ IT P ++ R + Y Sbjct: 83 DTEAEALALEANLIKQHQPYFNVLLKDDKKYPYVCITWSEDYPRIFITRKRQLGKEKDKY 142 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GP+ + + + +R F LR +F + RPCL + + RC G C IS E+Y Sbjct: 143 YGPYTDSGLLREILRISKRIFALRQRPQPLF--KDRPCLNYDLGRCPGVCQQLISPEEYR 200 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + V + G L + ++ M +A ++E A RD++A L + Sbjct: 201 KTVQKVAMVFQGRTQELIDILSEQMEKAAEALNFEVAARIRDQIAGLKSLTAEQKVSLPD 260 Query: 242 ----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-- 295 D +L + ACIQ GQ G F ++ +E IL L + Y Sbjct: 261 DTVSRDAIALAGDAQHACIQLFQIRAGQLVGRLAFVAESHAE--PGAILQRVLEEHYQTA 318 Query: 296 -DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P IL+ E + +L + G KV I P++ K ++IE NA + Sbjct: 319 ESVEIPAEILVQHELPDAEILADVLTQLKGRKVTIFTPQRQVKAELIEMVERNAQYELQR 378 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + +D LP++P RIE YD SHI G +AV VV + K YR Sbjct: 379 MQKLGDRNHQATQDLAAILDLPNLPHRIEGYDISHIQGSNAVASQVVFIDGLPAKQNYRH 438 Query: 415 FNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472 + + V DD A + V++RRF + ++ P+ P WPD++++DGG Sbjct: 439 YKIKNPTVTIGHSDDFASLAEVIQRRFRKYAED-------PQLSRVGNPDWPDLIMIDGG 491 Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532 KGQLS+ VL+++N+ + +IS+AK + E F + + L + P + ++R Sbjct: 492 KGQLSSVVTVLQEMNLLEDLRVISLAKRRE-----EIFLPGESQPLKTDAEQPGVQLLRR 546 Query: 533 LRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 LRDEAHRFA++ HR++R K S LDEI G+G R++ +L F +V I +++P +A Sbjct: 547 LRDEAHRFAVSFHRQQRSDKLKRSRLDEIPGLGHHRQKQMLAHFRSVDYIRQATPSQIAE 606 Query: 592 IEGISKKIACKIYNHFHKN 610 + GI +A IY++FH + Sbjct: 607 VPGIGPHLAQAIYDYFHPS 625 >gi|257886739|ref|ZP_05666392.1| excinuclease ABC [Enterococcus faecium 1,141,733] gi|257822793|gb|EEV49725.1| excinuclease ABC [Enterococcus faecium 1,141,733] Length = 592 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 187/613 (30%), Positives = 309/613 (50%), Gaps = 40/613 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY +++T + ++S+I + + VT + Sbjct: 12 LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFTGSHNT-KTERLVSEIEDFEYIVTES 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EALLLE N+IK+ P++NI+L+DDK++P++ IT+ K P L R + YFGP+ Sbjct: 71 NIEALLLEINLIKKNDPKYNIMLKDDKTYPFLKITN-EKYPRLVITRKVLKDKALYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 V A +T L R F LR C S + PCL + + +C P ++ + Y + V Sbjct: 130 PDVGAANETKKILDRLFPLRKCKPSQTKE---PCLYYHLGQCLCPYYFDVDPKVYTKIVD 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E K FL+GG+ ++ +I R M +A ++E A +RD++ A+ I Sbjct: 187 EVKNFLNGGHEKIESEIHRKMEKAAENMEFEKAAEYRDQIRAIETIMTRQKMTNTDLLDR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +E+ + + P+ Sbjct: 247 DVFGYAIDKGWMCVQVFFVRQGKLIERDVSMFPFYNEAEEDFLTYIGQFYQENEHFIPKE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 +L+ + ++ S+ + K + PK+GEK+K++E A NA + Sbjct: 307 VLIPDTIDKPSVEALLDTK-------VLQPKRGEKKKLVELANKNASVALNERFDLIARK 359 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + ++ +P RIE +DNS+IMG + V MVV + + +YRK+ + Sbjct: 360 QERTIGAVERLGNAMNIPTP-IRIESFDNSNIMGTNPVAAMVVFIDGKPARKEYRKYKIK 418 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V DD A MR V+ RR+S++I+ PD++++DGGKGQ+ Sbjct: 419 T--VNGPDDYASMREVIYRRYSRVIREG--------------LPLPDLILIDGGKGQVDV 462 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ VL + + I I +AK K E F + L P + +QR++DE H Sbjct: 463 AKDVL-ENQLGIDIPIAGMAKNDKHKT-NELLFGTDLAVVPLERNSPEFFLLQRVQDEVH 520 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ R K ++ S LDEI G+GP RK++LL+ F ++K I+ ++ E L I G+ K Sbjct: 521 RFAITFHRQLRSKNSFASRLDEIEGLGPKRKKMLLKEFKSLKNITAATIEELQEI-GLPK 579 Query: 598 KIACKIYNHFHKN 610 +A +++ H+ Sbjct: 580 NVAQNVFDKLHQE 592 >gi|238898618|ref|YP_002924299.1| excinuclease UvrABC, endonuclease subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466377|gb|ACQ68151.1| excinuclease UvrABC, endonuclease subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 607 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 213/619 (34%), Positives = 339/619 (54%), Gaps = 31/619 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + GVY+M D G V+YVGKA +L+KR+ SY +H+ ++ I I TV Sbjct: 8 LKTVTHQLGVYRMYDTTGAVIYVGKAKDLKKRLTSYFRKQVSSHKTEALVKHIFKIDVTV 67 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EALLLE N IKR +PR+N+LLRDDKS+P I ++ P L HR + +G YF Sbjct: 68 THSETEALLLEHNYIKRYQPRYNVLLRDDKSYPLIFLS-AENHPRLTIHRGARHQKGDYF 126 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C ++V+R+R+RPCL +QIKRCSGPC S E+Y Sbjct: 127 GPFPNSYAVRETLTLLQKLFPVRQCENTVYRNRSRPCLQYQIKRCSGPCVKGLTSDEEYQ 186 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + V+ + FLSG + + K+ M +A+ D+E A RD++ ++ + + Sbjct: 187 QQVNYVRLFLSGKDQQVLNKLVSQMEEASRSMDFEKAARIRDQIQSVRQVTEKQFVSGDN 246 Query: 242 M--DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295 D ++ LAC+ F +G+ G+ ++F K + +++ F+ QFY Sbjct: 247 QDLDVIAVAFEAGLACVHVLFIRYGKVLGSRSYFPKVPGGTKLGEVVETFVGQFYLAGSE 306 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P+ ILL+ E + L ++ G K++I +G++ + ++ A NA + + + Sbjct: 307 MRTLPKEILLNFSLPEKTALSSLLTERAGQKIQIQNCPRGDRARYLKLASTNAVSALSTR 366 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + LK L I R+E +D SH MG V VV E G VK++YR++ Sbjct: 367 LSQKSTFHSRLKALEIVLNLTPIK-RMECFDISHHMGEQTVASCVVFNEQGPVKSEYRRY 425 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL+RR+S+ +K+E+ PD++ +DGGKGQ Sbjct: 426 NIVG--LPPGDDYAAMSQVLQRRYSKSLKDEQ---------------IPDIIFIDGGKGQ 468 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQ 531 L+ A + L V +++ ++++AKG +R G+E F G+ + L L+ IQ Sbjct: 469 LAKAIDMFSALKVCWNKDKPKLVAVAKGSERKPGLETLFFYVTGKGMSLPCDSLALHLIQ 528 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+H AIT HR+R K S L+ I G+GP R+++LL+ G +K + +S E +A Sbjct: 529 HIRDESHTHAITGHRRRHAKIKNTSMLEMIEGVGPRRRQMLLKYMGGLKPLLNASVEEIA 588 Query: 591 SIEGISKKIACKIYNHFHK 609 I IS+ +A KIYN + Sbjct: 589 KIPNISRILAQKIYNALKQ 607 >gi|238019501|ref|ZP_04599927.1| hypothetical protein VEIDISOL_01370 [Veillonella dispar ATCC 17748] gi|237864200|gb|EEP65490.1| hypothetical protein VEIDISOL_01370 [Veillonella dispar ATCC 17748] Length = 617 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 186/615 (30%), Positives = 312/615 (50%), Gaps = 34/615 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRF 60 +P PGVY D R++YVGKA NL+ R++SY+ ++ + ++T M+ + ++ Sbjct: 18 KVSHLPTTPGVYLWRDQYNRIIYVGKAINLRNRVRSYVRNDANRAPKVTAMMKRAVDVEI 77 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE+EAL+LE +IK +P++NI LRDDK++PY+ I+ + P +Y R Sbjct: 78 IQTKTEMEALILENTLIKEHEPKYNIRLRDDKTYPYVKISVQEDYPRVYMTRRLERDGAK 137 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGPF V +V + +++ + LR+C RPCL + + C PC +IS Y Sbjct: 138 YFGPFTDVTSVHVVLKLIRQYYPLRTCKSMKVE---RPCLQYHMHYCEAPCFNKISIPDY 194 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 +++ E + G L ++I M A +E A +RD+L+++ IQ + Sbjct: 195 RKYIDEIIELFEGKPIPLLKEIKEKMELAAEDLQFEDAARYRDQLSSIEKIQEKQRMVTQ 254 Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 +D + + ++AC+Q F G+ G +F++ D +S + + + + Sbjct: 255 RGDLDVLGIAVDTSMACVQLLFIRGGRLLGRENYFVQHDGDSPETIMTDFIKQYYGDTNF 314 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQ 354 P+ +LL ++ + LL F + G V+++VP++G K +I+ A NA Q Sbjct: 315 IPKELLLPMDSSDRDLLSEWFTQLKGQNVEVSVPQRGYKMDMIKMAHENAETFLEERRRQ 374 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +K + LP +P+R+E +D SH G V MVV K +YR+ Sbjct: 375 WQYQIDKTGGAVKKLAEVLDLPRLPERMECFDISHTQGAETVASMVVFEGGKPAKKEYRR 434 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F L DD M ++ERR+ + PD++I+DGGKG Sbjct: 435 FKLKTTQG-KPDDFKSMAEIMERRY----------------GNETDWPMPDLIIIDGGKG 477 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 QL+AA +++ + V + + +IS+AK + E F + E+++L+ P L +Q++R Sbjct: 478 QLNAALPLIRAVGVTD-VPVISLAKRIE-----EVFVEGQSESIILSHHTPELQLLQQIR 531 Query: 535 DEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DEAHRFAIT HRK R K+ S LD I GIGP R++ L F +++ + +S + L+ +E Sbjct: 532 DEAHRFAITYHRKLRGKRNLESILDHIEGIGPKRRKALWAHFNSLEAMKEASIDELSKVE 591 Query: 594 GISKKIACKIYNHFH 608 ++ K A +YN F Sbjct: 592 SMNYKTAEALYNFFR 606 >gi|89073042|ref|ZP_01159589.1| excinuclease ABC subunit C [Photobacterium sp. SKA34] gi|89051260|gb|EAR56716.1| excinuclease ABC subunit C [Photobacterium sp. SKA34] Length = 589 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 208/608 (34%), Positives = 329/608 (54%), Gaps = 31/608 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D AG V+YVGKA +L+KR+ SY +N + ++ I N+ TVT TE EAL+LE Sbjct: 1 MYDAAGVVIYVGKAKDLKKRLSSYFRTNVAGEKTRALVKNICNVDVTVTHTETEALILEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK+ P++N+LLRDDKS+PYIL++ K P L HR +G YFGP+ V AV ++ Sbjct: 61 NYIKQYLPKYNVLLRDDKSYPYILLSAS-KHPRLSIHRGVKRRKGEYFGPYPDVGAVRES 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193 ++ +Q+ F +R C DSV+ +R+RPCL++QI RCSGPC IS + Y + V + FL G Sbjct: 120 LHLIQKIFPVRQCEDSVYANRSRPCLMYQIGRCSGPCVEGLISDDDYQQQVQLVRLFLQG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDC---FSLYHN 250 + + + + M QA+ ++E A +RD++ AL IQ + D + H+ Sbjct: 180 KDRQVISIMVKKMEQASQALEFEQAARYRDQIQALRRIQEQQFVSQDNEDDIDVIGIAHS 239 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLS 306 LACI + G+ G+ ++F K ++T ++LS F+ Q+Y + P ILLS Sbjct: 240 NGLACIHGLYIRQGKILGSRSYFPKVPIDATLTEVLSGFVTQYYFNQVEGRVIPSVILLS 299 Query: 307 EEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365 E EE + + + G + +G + + ++ A NA + T K++ ++ Q Sbjct: 300 ETLGEEGETIAKALTEMAGRTITFKYNSRGTRAQYLKLAKTNAETALTSKINHRLTIQER 359 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 + L I R+E +D SH MG V VV + G +K +YR++N+ + Sbjct: 360 FFALQQALNLKPIS-RMECFDISHTMGEKTVASCVVFNQEGPLKQEYRRYNI--TGITGG 416 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD A M VLERR+S+ ++ ++ PD++ +DGG+GQLS A V+K Sbjct: 417 DDYAAMAQVLERRYSKNMELDK---------------IPDIIFIDGGRGQLSTAYDVVKP 461 Query: 486 --LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 + R ++ +AKG R G+E GE + P L+ IQ +RDE+H AI+ Sbjct: 462 YIADWPKRPLLVGVAKGTTRKPGLETLIFVTGEEFSMPSDSPALHLIQHIRDESHNHAIS 521 Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR +R K S L+++ GIGP R++ LL+ G ++ + +++ E +A + GIS +A K Sbjct: 522 GHRAQRAKVRKRSSLEDVEGIGPKRRQALLKYMGGMQELKKANKEEIAKVPGISPALAEK 581 Query: 603 IYNHFHKN 610 I + N Sbjct: 582 IVDALQHN 589 >gi|303257851|ref|ZP_07343861.1| excinuclease ABC subunit C [Burkholderiales bacterium 1_1_47] gi|302859454|gb|EFL82535.1| excinuclease ABC subunit C [Burkholderiales bacterium 1_1_47] Length = 617 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 211/620 (34%), Positives = 334/620 (53%), Gaps = 34/620 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PGVY+ D G +LYVGKA +L++R+ SY R M+ QI + + TV Sbjct: 14 LKNLPHLPGVYRYFDKDGNLLYVGKARDLKRRVSSYFQKT-LAPRTKLMVDQIASAQITV 72 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +E EAL+LE+N+IK PRFNIL RDDKS+PY+ ++ P L +R + + SYF Sbjct: 73 VNSEAEALILESNLIKTQDPRFNILFRDDKSYPYLKLSSGE-YPRLSYYRGALDKRNSYF 131 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +A + T+ LQ+ F LR+C SVF +R+RPCLL+QI RCSG C ++S E+Y + Sbjct: 132 GPYPNANAAKDTMLLLQKVFQLRTCETSVFNNRSRPCLLYQIGRCSGGCCKKVSPEEYGK 191 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242 V AK+FL G + ++E + R MN+ + K D+E A + RD LAA+S++ + Sbjct: 192 SVDLAKEFLRGDSQKVQEDLTRRMNEYSQKLDFERAAVMRDHLAAISNVIHQQSMEAAPD 251 Query: 243 ---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFL---KTDSESTNAQILSYFLRQFYTD 296 D + + C+ G++ G F + ++L F+ YT Sbjct: 252 ANADIIAAVAAQGEVCVNLAMVRGGRHLGDKASFPSLGRNAELPELEEVLEAFITHHYTQ 311 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P ++++ E E + +E G KV + Q +RK +E A+ NA S +K+ Sbjct: 312 MDVPPVVIINLE-ERSPRIEELLNTIAGKKVSVIYRPQNIRRKWLELAVTNAKVSLGRKV 370 Query: 357 STEISHQMILKDFTKKFALP-----HIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 + E S + + ++ L + R+E +D SH G + VV N +Q Sbjct: 371 AEEGSQKKRIGALVQELGLDIPESEYEDFRVECFDISHSSGEATQASCVVFAGNRMDSSQ 430 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YR+FN+ V DD A M+ VL RR+ ++ E + P++V++DG Sbjct: 431 YRRFNIKD--VTAGDDYAAMKQVLTRRYQRVANGE--------------ATLPNIVLVDG 474 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK--GEALVLNMRDPILYF 529 G+GQ+ A V +L ++ + I+ +AKG R G+E+ E L L P L Sbjct: 475 GRGQVKMACEVFDELGLDKNV-IVGVAKGEGRKVGLEELVFPDPNKEPLKLGQESPALML 533 Query: 530 IQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 I ++RDEAHRFAIT R +R KA YS ++++ G+G R++ LL+ FG++K++S +S E Sbjct: 534 IAQIRDEAHRFAITGMRAKRAKARNYSRIEDLEGVGSKRRQKLLERFGSLKVLSNASVED 593 Query: 589 LASIEGISKKIACKIYNHFH 608 +AS++GIS+ +A +IY H Sbjct: 594 IASVDGISQTLARQIYAQLH 613 >gi|251798785|ref|YP_003013516.1| excinuclease ABC, C subunit [Paenibacillus sp. JDR-2] gi|247546411|gb|ACT03430.1| excinuclease ABC, C subunit [Paenibacillus sp. JDR-2] Length = 626 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 184/629 (29%), Positives = 301/629 (47%), Gaps = 47/629 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M + G ++YVGKA L+ R++SY + + H + ++S+I + + +T + Sbjct: 26 LPDQPGCYLMKNGEGTIIYVGKAKVLKNRVRSYFNGS-HNGKTQRLVSEIRDFDYIITSS 84 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ PR+N+LL+DDK+FPYI IT+ K P L R +G YFGP+ Sbjct: 85 NMEALILECNLIKQYHPRYNVLLKDDKTFPYIKITN-EKHPRLEVTRRVVKDKGKYFGPY 143 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + A ++T L R + LR C + CL + I +C PC ++ +Y + Sbjct: 144 PNAFAAQQTKKLLDRLYPLRKCGTLP----DKVCLYYHIGQCIAPCEYDVEQGQYDAMIQ 199 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E KFL+GG+ +K +I R M A + ++E A +RD++ ++ + N Sbjct: 200 EITKFLNGGHDAVKAEIHRKMEAAAEELNFERAKEYRDQIISIDAVIEKQKITMNDALDR 259 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F K C+Q + G+ E F+ Q+Y+D P Sbjct: 260 DIFGYAVEKGWMCVQILYMRQGKMIERRGTTFPYYGEE--YDDFMTFVTQYYSDNPALPK 317 Query: 303 ILLSEEAEETSL---------LEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS-- 351 +L E E + KVK+ +P++G K + + A+ NA + Sbjct: 318 QILLPLPAEEEEGTAESSTASDEFATMLHNWLKVKVLMPQRGRKSEAVSMAIDNAKIALA 377 Query: 352 --HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 E + + LP + RIE +DNS+I G + V MVV + + Sbjct: 378 DKFRLIERDEERSVRASEGLAEWLGLPEVR-RIEAFDNSNIQGTNPVSAMVVFTDGKPDR 436 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 +YRK+ + V DD MR V+ RR+ +++K ++ + PD++++ Sbjct: 437 KEYRKYKVKT--VVGADDYETMREVIRRRYERMLKEQQ--------------TPPDLIVV 480 Query: 470 DGGKGQLSAAQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 DGGKGQ+SAA + +L + I + + K K E + L Y Sbjct: 481 DGGKGQISAALDILQNELGLY--IPVCGLVKDAKHKTAQ-LMTGDPPEVVPLPRDSQEFY 537 Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 +QR++DE HRFAI+ HR++R K S LD I GIG R++LLL+ FG++K I +S E Sbjct: 538 LLQRIQDEVHRFAISFHREQRGKSMIASQLDAIPGIGEKRRKLLLKHFGSIKKIKEASIE 597 Query: 588 TLASIEGISKKIACKIYNHFHKNTSHTPT 616 + I +K+A +I ++ T Sbjct: 598 DFKPL-SIGEKLASQILAALNEEVKDKET 625 >gi|302336068|ref|YP_003801275.1| Excinuclease ABC subunit C [Olsenella uli DSM 7084] gi|301319908|gb|ADK68395.1| Excinuclease ABC subunit C [Olsenella uli DSM 7084] Length = 678 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 173/634 (27%), Positives = 295/634 (46%), Gaps = 49/634 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PG Y D G V+YVGKA NL+ R+ Y++ + +I M+ + + + V Sbjct: 34 QVPTEPGCYLWKDGRGEVIYVGKAKNLRSRMLQYVNLTDDRAKIPLMMQVVRSFDYVVVG 93 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EAL+LE N+I + P FN+ +DDKS+PYI IT+ PA+ R+ YFGP Sbjct: 94 SEHEALVLERNLIAQYHPYFNVDFKDDKSYPYIAITEDDAFPAIKYTRERHRKGTRYFGP 153 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRT---------------------RPCLLFQ 163 + A +TI++L++ + + + ++ RPC + Sbjct: 154 YTDSHAARETIDTLRKAVPICIASCTEWKRARRYLKGHPDDVAIANLVLGEHCRPCFDYH 213 Query: 164 IKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRD 223 + R G C G+I + Y V + +KFLSG + ++ M++A ++E A + Sbjct: 214 VGRGPGVCCGQIDTVDYAAHVRQVEKFLSGRRAEICGELEDQMHEAASNLEFERAARIKR 273 Query: 224 RLAALSHIQNHNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSES 280 RL + + + + D Y + ++C G+ + F L ++ Sbjct: 274 RLEVIDGLDDRQQVTFPTSVNLDLIGFYREETISCACVFVVREGRTIRSSEFILNKGADV 333 Query: 281 TNAQILSYFLRQFYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRK 339 ++ F++++Y + P + + + LL ++ G V + P++GEK Sbjct: 334 DEVELTGGFVKRYYDETADIPAEVDVRCALPDAELLGGWLTEKRGLAVHVHRPQRGEKSH 393 Query: 340 IIEQALINAHRSHTQKLST----EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSA 395 +++ A NA + + + + L AL P RIE +D S + G Sbjct: 394 LLDMAERNARHALMRYMVRTGYADDRTNQALLQLESALALDAPPLRIECFDISTLHGNFT 453 Query: 396 VGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK 455 V MVV K QYR+F + + +D M VL RR+ + Sbjct: 454 VASMVVFTNGRPDKGQYRRFKVRSQ-LDEANDFVSMGEVLGRRY-----------APERM 501 Query: 456 QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG 515 + F S PD++++DGGK QL+AA L L ++ I + +AK + E F Sbjct: 502 ADERFGSRPDLLVVDGGKPQLTAALRQLGALGLD--IPVCGLAKSDE-----EVFVPWDE 554 Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQS 574 +VL LY I+++RDE+HRFAIT HR+ R KA S LD+I G+GP RK+ +++ Sbjct: 555 TPVVLPSGSASLYLIKQVRDESHRFAITFHRELRDKAMTISVLDDIEGVGPKRKKAIMRH 614 Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 FG++K + +SP +AS+ G+ + +A ++ Sbjct: 615 FGSLKRLRAASPGEIASVRGVPEAVARDVWQTLR 648 >gi|315223178|ref|ZP_07865039.1| excinuclease ABC subunit C [Streptococcus anginosus F0211] gi|315187610|gb|EFU21364.1| excinuclease ABC subunit C [Streptococcus anginosus F0211] Length = 602 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 173/623 (27%), Positives = 296/623 (47%), Gaps = 41/623 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 11 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 69 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK +P++NI+L+DDKS+P+I IT+ P L R G Y Sbjct: 70 VTESNIEALLLEINLIKENQPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDGGLY 128 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + + C + I +C + Sbjct: 129 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----EKVCFYYHIGQCRAHTICHNEPHFFQ 184 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 + E FL G + + +++ R M A K ++E A +RD L +++ ++ + Sbjct: 185 DMAQEVSDFLKGHDDKIIDELKRKMTSAADKMEFEKAAEYRDLLQSIATLRTKQRVMAKD 244 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 245 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNMFPYYNDPDEDFLTYIGQFYQEKSHL 304 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQ 354 P IL+ + ++ ++ + K P++GEK++++ A+ NA + Sbjct: 305 IPNEILIPSDIDDVAVQAVVDTKILK-------PQRGEKKQLVNLAIKNAQVSLQQKFDL 357 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 358 LEKSVEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFINGKPSKKDYRK 416 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V++RR+S+++++ PD++++DGG+G Sbjct: 417 YKIKT--VVGPDDYASMREVIKRRYSRVMRDG--------------LIPPDLIVIDGGRG 460 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V++ + I I + K K E F + + L+ + +QR++ Sbjct: 461 QVNIAKDVIQH-QLGLDIPIAGLQKNDKHQT-HELLFGDPLKVVELSRNSQEFFLLQRIQ 518 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+ L++ F ++ I ++S + + + Sbjct: 519 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMRHFKSLTNIKKASVDEIVEV- 577 Query: 594 GISKKIACKIYNHFHKNTSHTPT 616 G+ +K+A + K+T T Sbjct: 578 GVPRKVAEAVQEKLSKSTDKKIT 600 >gi|170761411|ref|YP_001788709.1| excinuclease ABC subunit C [Clostridium botulinum A3 str. Loch Maree] gi|229558020|sp|B1L273|UVRC_CLOBM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|169408400|gb|ACA56811.1| excinuclease ABC, C subunit [Clostridium botulinum A3 str. Loch Maree] Length = 618 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 187/619 (30%), Positives = 314/619 (50%), Gaps = 19/619 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 + +P+ PGVY M + G ++YVGKA L+ R++ Y + H+ ++ M+ I + Sbjct: 7 QLKNLPDKPGVYLMKNNLGEIIYVGKAKILKNRVRQYFQKSQKHSEKVKAMVKNIEEFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE N+IK+ +P++NILL+DDK +P+I +T P + R + Sbjct: 67 IITDSEIEALILECNLIKKYRPKYNILLKDDKHYPFIKVTLAEDFPRVISTRKVTKDGSK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT--RPCLLFQIKRCSGPCTGEISSE 178 YFGP+ +V+ I +++TF +R+C ++ RPCL +QI C PC I Sbjct: 127 YFGPYVDGSSVKDIIELIKKTFPIRTCKKNIVEGAKAIRPCLNYQIGLCKAPCAQYIKKS 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 +Y E + + K LSG + ++ E NM +A ++E A + RD++ + I Sbjct: 187 EYREIIDDVIKLLSGKHLDIVENFKLNMEKAAENLEFEKAAMLRDKINIIEKIGEKQKII 246 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 ++ D SLY + C Q F G+ G F ++ ++ ++ ++S FL++FY Sbjct: 247 LNNFDNEDYISLYSDGKDTCFQVFFLRNGKIVGREHFIIEDTFDTNSSTLISNFLKEFYG 306 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351 + E+ +LLE + K I +P +GEK+ I++ NA Sbjct: 307 GTAYIPKTIYVPNIEDEALLEQWLTLKKESKSTIKIPIKGEKKNILDLVEKNAKTTLENF 366 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 + L + + +LKD +L P RIE +D S+I G +VG MVV + + Sbjct: 367 KLKYLQEKALYDNVLKDLKNILSLQEEPIRIEAFDISNIQGFDSVGSMVVFEKGRAKPSD 426 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILD 470 YR+F + VK DD M+ +L RRF + + + + F +PD++++D Sbjct: 427 YRRF--KISTVKGADDYKSMKEILTRRFQHGLSEIKSIQDRKLEFSSGKFSVFPDLILMD 484 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ++ A VL N++ I + + K K + GE +++N ++ FI Sbjct: 485 GGKGQINIALEVLNTFNID--IPVCGMVKDNKHRTRG---LIYNGEEIIINKYGSVMKFI 539 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DE HRFAI+ HR R K + +S LD+I IG RK+ LL +F ++ I +++ E L Sbjct: 540 TRVQDEVHRFAISYHRSLRGKNSFHSLLDDIPNIGEKRKKDLLFNFKSIDNIKKATYEEL 599 Query: 590 ASIEGISKKIACKIYNHFH 608 SI + KK A + F Sbjct: 600 LSIPSMDKKSAESVLEFFK 618 >gi|125718113|ref|YP_001035246.1| excinuclease ABC subunit C [Streptococcus sanguinis SK36] gi|189038125|sp|A3CNE1|UVRC_STRSV RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|125498030|gb|ABN44696.1| Nuclease subunit of the excinuclease complex, subunit C, putative [Streptococcus sanguinis SK36] Length = 611 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 170/622 (27%), Positives = 293/622 (47%), Gaps = 41/622 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNDTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK +P++NI+L+DDKS+P+I IT+ P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENQPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDVGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + + C + + +C ++ S+ + Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNPP----EKVCFYYHLGQCKAHTICKVDSQYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E E FL G + + E + M A ++E A +RD + ++ ++ + Sbjct: 182 ELAQEVAAFLKGQDDQIIEDLRGKMAGAAQAMEFEKAAEYRDLIQSIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P IL+ + +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 KPNEILIPADIDEEAVRAMVDTKVLK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSIEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V++RR+S++I++ + PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F + + L+ + +QR++ Sbjct: 458 QVNIAKEVIQE-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+ L++ F ++ I +S + + + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDQIVEV- 574 Query: 594 GISKKIACKIYNHFHKNTSHTP 615 G+ + +A + + T Sbjct: 575 GVPRAVAEAVREKLNPKTQEQE 596 >gi|186684085|ref|YP_001867281.1| excinuclease ABC subunit C [Nostoc punctiforme PCC 73102] gi|229558461|sp|B2J6D3|UVRC_NOSP7 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|186466537|gb|ACC82338.1| excinuclease ABC, C subunit [Nostoc punctiforme PCC 73102] Length = 625 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 192/618 (31%), Positives = 305/618 (49%), Gaps = 29/618 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVT 63 ++P PGVY M D + R++Y+GK+ L+ R++SY N T RI M+ + I F VT Sbjct: 23 EIPPEPGVYFMRDNSDRIIYIGKSRKLRSRVRSYFRDGYNKTERIATMVKLVTEIEFIVT 82 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQGSY 121 TE EAL LEAN+IK+ +P FN+LL+DDK +PY+ IT P ++ R + + Sbjct: 83 DTEAEALALEANLIKQHQPYFNVLLKDDKKYPYLCITWSEDYPRIFITRKRQLGKEKDKF 142 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GP+ + + + +R F R +F + RPCL + + RC G C S E+Y Sbjct: 143 YGPYTDAGLLREIVRICKRIFPQRQRPQPLF--KDRPCLNYDLGRCPGVCQKLTSPEEYR 200 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + V + G L + + + MN A ++ESA RD+++ L + Sbjct: 201 KIVQKIAMVFQGRTQELIDILTQQMNAAAENLNFESAARIRDQISGLKSLTADQKVSLPD 260 Query: 242 ----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-- 295 D +L N+ ACIQ GQ G D+ + IL L + Y Sbjct: 261 DTVSRDAIALAANEEHACIQLFQIRAGQLVGR--LAFVADAHAELGAILQRALEEHYQTA 318 Query: 296 -DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P IL+ + ++ +L ++ G KV I P + K ++IE NA + Sbjct: 319 DSVEIPLEILVQHDLPDSDILADVLTQRKGKKVTILTPLRQTKAELIEMVERNAQYELQR 378 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + ++D LP +P RIE YD SHI G +AV VV + K YR Sbjct: 379 MQKFGDRNHQAMQDLAAILDLPDVPHRIEGYDISHIQGSNAVASQVVFIDGLPAKQHYRH 438 Query: 415 FNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472 + + V D A + V++RRF + ++ P+ P WPD++++DGG Sbjct: 439 YKIKNPTVTAGHSDDFASLAEVIQRRFRKYAED-------PQLSRLGNPDWPDLIMIDGG 491 Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532 KGQLS+ VL+++N+ + ++S+AK + E F + + + P + ++R Sbjct: 492 KGQLSSVTAVLQEMNLLEDLRVVSLAKQRE-----EIFLPGESKPSSTDAEQPGVQLLRR 546 Query: 533 LRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 LRDEAHRFA++ HR++R K S LDEI G+G R++ LL F +V I +++ LA Sbjct: 547 LRDEAHRFAVSFHRQQRSDKLKRSRLDEIPGLGHHRQKQLLGHFRSVDYIRQATTPQLAE 606 Query: 592 IEGISKKIACKIYNHFHK 609 + GI ++A +IY++FH Sbjct: 607 VPGIGPRLAQEIYDYFHP 624 >gi|167856418|ref|ZP_02479141.1| UvrABC system protein C [Haemophilus parasuis 29755] gi|167852459|gb|EDS23750.1| UvrABC system protein C [Haemophilus parasuis 29755] Length = 591 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 210/607 (34%), Positives = 328/607 (54%), Gaps = 32/607 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D G ++YVGKA +L+KR+ SY SN + + ++SQI +I T+T +E EALLLE Sbjct: 1 MYDDKGTIIYVGKAKDLKKRLSSYFRSNLASRKTEALVSQIAHIDTTITHSETEALLLEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK +P++N+LLRDDKS+PYIL+T KH+ P L R S I G YFGP+ + AV +T Sbjct: 61 NYIKENQPKYNVLLRDDKSYPYILLT-KHQHPRLASFRGSKKIAGEYFGPYPNAGAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHEAKKFLSG 193 +N LQ+ F +R C DS +++R+RPCL +QI RC PC S +Y + V + FL G Sbjct: 120 LNLLQKLFPIRQCEDSYYKNRSRPCLQYQIGRCLAPCVEGVYSQREYDQQVEYVRLFLQG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMDCFSLYHN 250 + + E + M +A D+E+A RD++ + + + +D S+ + Sbjct: 180 KDQQVIEHLIGKMEKAAEDLDFEAAARFRDQIQQMRVVTEKQFVSNERLDDLDIISIAYQ 239 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLS 306 +AC+ F G+ G+ ++F K + + A++ F+ QFY + P I++ Sbjct: 240 HGIACVHILFVRQGKMLGSRSYFPKVPNHTEFAELSDTFIGQFYLQMNQHRTIPHQIIID 299 Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366 E LE +Q G+KV IT +GEK + + A NA + T +L + Q Sbjct: 300 HSVSEVDALEKVLSEQAGHKVSITDKVRGEKSRYLALAKTNAMAALTLQLKQDARIQTRY 359 Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426 + +LP I R+E +D SH MG V VV ENG +K+ YR+FN+ + D Sbjct: 360 EALQAVLSLPKIA-RMECFDISHTMGEQTVASCVVFDENGPLKSDYRRFNIEG--ITGGD 416 Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486 D A M L +R+ + + E+ PD++ +DGGKGQL+ A L Sbjct: 417 DYAAMEQALLKRYDKPLPPEK---------------IPDIIFIDGGKGQLNRALDTFANL 461 Query: 487 NVE---NRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542 VE ++ +I +AKG +R AG+E + K + + L P L+ IQ +RDE+H AI Sbjct: 462 KVEWDKSKPLLIGVAKGVERKAGLETLLISKWDKEIHLPPDSPALHLIQHIRDESHNHAI 521 Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 + HRK+R+KA S L+ I G+G R+ LLL+ G ++ + ++ + + S+ GIS +A Sbjct: 522 SGHRKKRQKAFTESGLEAIAGVGAKRRHLLLKYLGGMQGVKSATLDEIKSVPGISVSLAE 581 Query: 602 KIYNHFH 608 I++ + Sbjct: 582 IIFDTLN 588 >gi|69245124|ref|ZP_00603248.1| Excinuclease ABC, C subunit [Enterococcus faecium DO] gi|257879662|ref|ZP_05659315.1| excinuclease ABC [Enterococcus faecium 1,230,933] gi|257890328|ref|ZP_05669981.1| excinuclease ABC [Enterococcus faecium 1,231,410] gi|258616729|ref|ZP_05714499.1| excinuclease ABC subunit C [Enterococcus faecium DO] gi|260559676|ref|ZP_05831856.1| excinuclease ABC [Enterococcus faecium C68] gi|293560078|ref|ZP_06676582.1| excinuclease ABC, C subunit [Enterococcus faecium E1162] gi|314938139|ref|ZP_07845444.1| excinuclease ABC subunit C [Enterococcus faecium TX0133a04] gi|314943820|ref|ZP_07850555.1| excinuclease ABC subunit C [Enterococcus faecium TX0133C] gi|314949779|ref|ZP_07853089.1| excinuclease ABC subunit C [Enterococcus faecium TX0082] gi|314951187|ref|ZP_07854245.1| excinuclease ABC subunit C [Enterococcus faecium TX0133A] gi|314994418|ref|ZP_07859702.1| excinuclease ABC subunit C [Enterococcus faecium TX0133B] gi|314995614|ref|ZP_07860708.1| excinuclease ABC subunit C [Enterococcus faecium TX0133a01] gi|68195967|gb|EAN10400.1| Excinuclease ABC, C subunit [Enterococcus faecium DO] gi|257813890|gb|EEV42648.1| excinuclease ABC [Enterococcus faecium 1,230,933] gi|257826688|gb|EEV53314.1| excinuclease ABC [Enterococcus faecium 1,231,410] gi|260074344|gb|EEW62666.1| excinuclease ABC [Enterococcus faecium C68] gi|291605945|gb|EFF35375.1| excinuclease ABC, C subunit [Enterococcus faecium E1162] gi|313590202|gb|EFR69047.1| excinuclease ABC subunit C [Enterococcus faecium TX0133a01] gi|313591190|gb|EFR70035.1| excinuclease ABC subunit C [Enterococcus faecium TX0133B] gi|313596666|gb|EFR75511.1| excinuclease ABC subunit C [Enterococcus faecium TX0133A] gi|313597544|gb|EFR76389.1| excinuclease ABC subunit C [Enterococcus faecium TX0133C] gi|313642486|gb|EFS07066.1| excinuclease ABC subunit C [Enterococcus faecium TX0133a04] gi|313643852|gb|EFS08432.1| excinuclease ABC subunit C [Enterococcus faecium TX0082] Length = 592 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 187/613 (30%), Positives = 310/613 (50%), Gaps = 40/613 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY +++T + ++S+I + + VT + Sbjct: 12 LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFTGSHNT-KTERLVSEIEDFEYIVTES 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EALLLE N+IK+ P++NI+L+DDK++P++ IT+ K P L R + YFGP+ Sbjct: 71 NIEALLLEINLIKKNDPKYNIMLKDDKTYPFLKITN-EKYPRLVITRKVLKDKALYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 V A +T L R F LR C S + PCL + + +C P ++ + Y + V Sbjct: 130 PDVGAANETKKILDRLFPLRKCKPSQTKE---PCLYYHLGQCLCPYYFDVDPKVYTKIVD 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E KKFL+GG+ ++ +I + M +A ++E A +RD++ A+ I Sbjct: 187 EVKKFLNGGHEKIESEIHQKMEKAAENMEFEKAAEYRDQIRAIETIMTRQKMTNTDLLDR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +E+ + + P+ Sbjct: 247 DVFGYAIDKGWMCVQVFFVRQGKLIERDVSMFPFYNEAEEDFLTYLGQFYQENEHFIPKE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 +L+ + ++ S+ + K + PK+GEK+K++E A NA + Sbjct: 307 VLIPDTIDKPSVEALLATK-------VLQPKRGEKKKLVELANKNASVALNERFDLIARK 359 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + ++ +P RIE +DNS+IMG + V MVV + + +YRK+ + Sbjct: 360 QERTIGAVERLGNAMNIPTP-IRIESFDNSNIMGTNPVAAMVVFIDGKPARKEYRKYKIK 418 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V DD A MR V+ RR+S++I+ PD++++DGGKGQ+ Sbjct: 419 T--VNGPDDYASMREVIYRRYSRVIREG--------------LPLPDLILIDGGKGQVDV 462 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ VL + + I I +AK K E F + L P + +QR++DE H Sbjct: 463 AKDVL-ENQLGIDIPIAGMAKNDKHKT-NELLFGIDLAVVPLERNSPEFFLLQRIQDEVH 520 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ R K ++ S LDEI G+GP RK++LL+ F ++K I+ ++ E L I G+ K Sbjct: 521 RFAITFHRQLRSKNSFASRLDEIEGLGPKRKKMLLKEFKSLKNITAATTEELQEI-GLPK 579 Query: 598 KIACKIYNHFHKN 610 +A +++ H+ Sbjct: 580 NVAQNVFDKLHQE 592 >gi|257882658|ref|ZP_05662311.1| excinuclease ABC [Enterococcus faecium 1,231,502] gi|294622754|ref|ZP_06701709.1| excinuclease ABC, C subunit [Enterococcus faecium U0317] gi|257818316|gb|EEV45644.1| excinuclease ABC [Enterococcus faecium 1,231,502] gi|291597805|gb|EFF28942.1| excinuclease ABC, C subunit [Enterococcus faecium U0317] Length = 592 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 185/613 (30%), Positives = 308/613 (50%), Gaps = 40/613 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY +++T + ++S+I + + VT + Sbjct: 12 LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFTGSHNT-KTERLVSEIEDFEYIVTES 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EALLLE N+IK+ P++NI+L+DDK++P++ IT+ K P L R + YFGP+ Sbjct: 71 NIEALLLEINLIKKNDPKYNIMLKDDKTYPFLKITN-EKYPRLVITRKVLKDKALYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 V A +T L R F LR C S + PCL + + +C P ++ + Y + V Sbjct: 130 PDVGAANETKKILDRLFPLRKCKPSQTKE---PCLYYHLGQCLCPYYFDVDPKVYTKIVD 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E K FL+GG+ ++ +I + M +A ++E A +RD++ A+ I Sbjct: 187 EVKNFLNGGHEKIESEIHQKMEKAAENMEFEKAAEYRDQIRAIETIMTRQKMTNTDLLDR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +E+ + + P+ Sbjct: 247 DVFGYAIDKGWMCVQVFFVRQGKLIERDVSMFPFYNEAEEDFLTYLGQFYQENEHFIPKE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 +L+ + ++ S+ + K + PK+GEK+K++E A NA + Sbjct: 307 VLIPDTIDKPSVEALLATK-------VLQPKRGEKKKLVELASKNASVALNERFDLIARK 359 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + ++ +P RIE +DNS+IMG + V MVV + + +YRK+ + Sbjct: 360 QERTIGAVERLGNAMNIPTP-IRIESFDNSNIMGTNPVAAMVVFIDGKPARKEYRKYKIK 418 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V DD A MR V+ RR+S++I+ PD++++DGGKGQ+ Sbjct: 419 T--VNGPDDYASMREVIYRRYSRVIREG--------------LPLPDLILIDGGKGQVDV 462 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ VL + + I I + K K E F + L P + +QR++DE H Sbjct: 463 AKDVL-ENQLGIDIPIAGMVKNDKHKT-NELLFGTDLAVVPLERNSPEFFLLQRIQDEVH 520 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ R K ++ S LDEI G+GP RK++LL+ F ++K I+ ++ E L I G+ K Sbjct: 521 RFAITFHRQLRSKNSFASRLDEIEGLGPKRKKMLLKEFKSLKNITAATTEELQEI-GLPK 579 Query: 598 KIACKIYNHFHKN 610 +A +++ H+ Sbjct: 580 NVAQNVFDKLHQE 592 >gi|218245950|ref|YP_002371321.1| excinuclease ABC subunit C [Cyanothece sp. PCC 8801] gi|257058998|ref|YP_003136886.1| excinuclease ABC subunit C [Cyanothece sp. PCC 8802] gi|218166428|gb|ACK65165.1| excinuclease ABC, C subunit [Cyanothece sp. PCC 8801] gi|256589164|gb|ACV00051.1| excinuclease ABC, C subunit [Cyanothece sp. PCC 8802] Length = 617 Score = 495 bits (1274), Expect = e-137, Method: Composition-based stats. Identities = 209/622 (33%), Positives = 319/622 (51%), Gaps = 35/622 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFT 61 +++P PGVY M + G +LY+GK+ L+ R++SY + H+ RI M+ Q+ +I F Sbjct: 18 LKELPSEPGVYLMRNQGGEILYIGKSKKLRSRVRSYFRPSQPHSPRIGLMVQQVADIEFI 77 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQG 119 VT TE EAL LEAN+IK+ +P FN+LL+DDK +PY+ IT P ++ R + Sbjct: 78 VTDTEAEALALEANLIKQHQPYFNVLLKDDKKYPYVCITWSQTYPRIFITRKRRLNNERD 137 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 Y+GP+ + +T+ ++R F LR +F + RPCL + I +C G C G IS E Sbjct: 138 RYYGPYVDTHLLRQTLQLVKRVFPLRQRPKPLF--KDRPCLNYDIGKCPGVCQGLISPED 195 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + V + G L EK+ + M +A + +E A + RD+L AL+ + Sbjct: 196 YHKIVEKVAMIFQGRTGELLEKLHQQMEKAATELRFEQAAMIRDQLKALNALTVDQKVSL 255 Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D +L + CIQ G+ G FF +S +T IL L Y Sbjct: 256 PDDTISRDAIALAKDTKHCCIQLFQIRAGRLVGRLGFFADAES-ATPGAILQRVLEDHYW 314 Query: 296 DKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 P IL+ E E+ +L + G KV ITVP++ K ++IE NA+ Sbjct: 315 QADGVEIPSEILVQYELPESEILAQWLSDRKGKKVTITVPQRQTKAQLIELVERNANYEL 374 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + T + + L+D + LP +P+RIE YD SHI G +AV VV + K Y Sbjct: 375 ERTQRTTERNLISLEDLAQILDLPDLPRRIEGYDISHIQGSNAVASQVVFIDGIPAKQHY 434 Query: 413 RKFNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 R + + +V DD A M V+ RRF + +PD++++D Sbjct: 435 RHYKIKNPNVTIGHSDDFASMAEVIGRRFRH--------------NQAKNIDYPDLIMID 480 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQLSA +L++LN+ + +IS+AK + E F + L N P + + Sbjct: 481 GGKGQLSAVVAILEELNLLETLEVISLAKQRE-----EIFLPGESYPLDTNAEQPGVQLL 535 Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 +R+RDEAHRFA++ HR++R KK+ S LDEI G+G R++ LL F ++ I +S E L Sbjct: 536 RRVRDEAHRFAVSFHRQQRLKKSRRSRLDEIPGLGFERQKQLLAYFHSIDYIREASIEQL 595 Query: 590 ASIEGISKKIACKIYNHFHKNT 611 + GI K +A +IY +FH ++ Sbjct: 596 QQVSGIGKALATEIYRYFHPSS 617 >gi|172060078|ref|YP_001807730.1| excinuclease ABC subunit C [Burkholderia ambifaria MC40-6] gi|229558022|sp|B1YVN3|UVRC_BURA4 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|171992595|gb|ACB63514.1| excinuclease ABC, C subunit [Burkholderia ambifaria MC40-6] Length = 684 Score = 495 bits (1274), Expect = e-137, Method: Composition-based stats. Identities = 203/670 (30%), Positives = 311/670 (46%), Gaps = 70/670 (10%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D AG VLYVGKA +L+KR+ SY + RI M+++I I TVT Sbjct: 19 QLPHMPGVYRYYDTAGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H+ P + +R S Q YFGP Sbjct: 79 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-AHRFPRMAYYRGSVDKQNQYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RC+ PC G IS++ Y V Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVGAISADDYAIDV 197 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 A +FL G + +++ + M+ + +E A R+++++L+ + + Sbjct: 198 SNAARFLLGRQSEVMKELEQKMHAFAAELKFEQAAAVRNQMSSLATVLHQQAIEVGSDSD 257 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D ++ C+ G++ G +F + D Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVESALTLAEGGLGDEADGADGADEA 317 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN-------------- 347 L E + + +V + I + L N Sbjct: 318 AAALPGEPADEAAAARDAASAASSASSASVEAEVLDAFIAQHYLGNRVPPVLVVSHAPAS 377 Query: 348 -----------------------------------AHRSHTQKLSTEISHQMILKDFTKK 372 A + + LS + S Q + + Sbjct: 378 RDLLELLSEQAGHKVSLVRQPQGQRRAWLSMAEQNARLALARLLSEQGSQQARTRALAET 437 Query: 373 FALPHI---PKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCA 429 + RIE +D SH MG + VV + +YR++N+ + DD A Sbjct: 438 LSFECDDLAMLRIECFDISHTMGEATQASCVVYHHHKMQSGEYRRYNI--TGITPGDDYA 495 Query: 430 MMRMVLERRFSQLIK---------NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 MR VL RR+ ++++ + ++ +Q + P++V++DGGKGQ+ A+ Sbjct: 496 AMRQVLTRRYEKMVEQAAQAAAADDAAGIDGESTRQAEASSLLPNIVLIDGGKGQVEIAR 555 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHR 539 V +L ++ + ++ +AKG R G+E G L L L + ++RDEAHR Sbjct: 556 QVFTELGLDTSM-LVGVAKGEGRKVGLETLVFADGRTPLELGKESAALMLVAQIRDEAHR 614 Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAIT R +R KA S L+E+ G+G R++ LL FG ++ + +S E LAS+EGIS Sbjct: 615 FAITGMRAKRAKARQTSRLEELEGVGAKRRQRLLARFGGLRGVVAASVEELASVEGISHA 674 Query: 599 IACKIYNHFH 608 +A +IY H Sbjct: 675 LAEQIYKQLH 684 >gi|154686983|ref|YP_001422144.1| excinuclease ABC subunit C [Bacillus amyloliquefaciens FZB42] gi|189038022|sp|A7Z7D7|UVRC_BACA2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|154352834|gb|ABS74913.1| UvrC [Bacillus amyloliquefaciens FZB42] Length = 590 Score = 495 bits (1274), Expect = e-137, Method: Composition-based stats. Identities = 177/613 (28%), Positives = 304/613 (49%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D V+YVGKA L+ R++SY + H + ++S+I + + VT + Sbjct: 12 LPDQPGCYLMKDRQKTVIYVGKAKVLKNRVRSYFTGS-HDAKTQRLVSEIEDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++N++L+DDK++P+I IT + P L R+ +G YFGP+ Sbjct: 71 NLEALILEMNLIKKYDPKYNVMLKDDKTYPFIKIT-HERHPRLIVTRNVKKDKGRYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A +T L R + LR C+ + R CL + + +C PC +IS E E V Sbjct: 130 PNVQAARETKKLLDRLYPLRKCS----KLPDRVCLYYHLGQCLAPCVKDISEETNREIVE 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 + +FL GG++ +K+++ M +A K ++E A RD+LA + N Sbjct: 186 DITRFLKGGHNEIKKELEAKMAEAAEKLEFERAKEFRDQLAHIESTMEKQKMTMNDLLDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ ++K C+Q F G+ E+ + + P+ Sbjct: 246 DVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPMYQEADEEFLTFIGQFYSKNNHFLPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 IL+ + + + E+ + + PK+G K++++ A NA + + Sbjct: 306 ILVPDSVDRDMITELL-------ETAVHQPKKGPKKELLLLAHKNAKIALREKFSLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E + + + + P RIE +DNS+I G + V M+V + K +YRK+ + Sbjct: 359 EERSIGAAERLGEALNI-YTPHRIEAFDNSNIQGTNPVSAMIVFIDGKPNKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V DD MR V+ RR++++++ PD++I+DGGKGQ++A Sbjct: 418 T--VTGPDDYGSMREVVRRRYTRVLREN--------------LPLPDLIIIDGGKGQINA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ VL+ +L ++ + + +AK K E + L Y +QR++DE Sbjct: 462 ARDVLENELGLD--VPVAGLAKDDKHRTSN-LLIGDPLEPVFLERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAI+ HR+ R K+ + S LD+I GIG RK++LL+ FG+VK + +S + + G+ Sbjct: 519 HRFAISFHRQIRGKSVFQSVLDDIPGIGEKRKKMLLKHFGSVKKMKEASLDDIKKA-GVP 577 Query: 597 KKIACKIYNHFHK 609 A ++ K Sbjct: 578 AAAAQLLFEKLKK 590 >gi|323144829|ref|ZP_08079398.1| excinuclease ABC, C subunit [Succinatimonas hippei YIT 12066] gi|322415354|gb|EFY06119.1| excinuclease ABC, C subunit [Succinatimonas hippei YIT 12066] Length = 649 Score = 495 bits (1274), Expect = e-137, Method: Composition-based stats. Identities = 216/620 (34%), Positives = 321/620 (51%), Gaps = 34/620 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PG Y+M D V+YVGKA +L+KR+ Y + + ++S I +I FTV Sbjct: 47 LKTVPNRPGSYRMYDKNETVIYVGKAKDLKKRLSQYFLKGVDSIKTRALVSHIAHIEFTV 106 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N+IK+ +PR+NILLRDDKS+PYIL+T K K P L+ HR + I G YF Sbjct: 107 TFSETEALILENNLIKKYQPRYNILLRDDKSYPYILLT-KDKHPGLFYHRGAKRIVGDYF 165 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS--EKY 180 GPF AV++++ LQ+ F +R CAD+V+ HR+RPCL+ Q+ +C PC E Y Sbjct: 166 GPFPDSSAVKESLRLLQKIFPIRQCADTVYAHRSRPCLMAQLGKCLAPCVPMGEKGEESY 225 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + V K FL G N L + M + +E A RD+L AL +Q + Sbjct: 226 AKQVELVKLFLRGQNQELLNNLTVLMQSFSKNLQFEEAAKCRDQLLALRRVQEAQSVSSD 285 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 +D LAC+ F G+ GT +++ K E + +++ FL QFY + Sbjct: 286 IKFDIDVIGHAVQDGLACVHVLFIRKGRILGTRSYYPKLPREGSLDELMMSFLSQFYLSE 345 Query: 298 P----CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 P+ I++ E +L+ + + G +VK + + E+ K + A NA S T Sbjct: 346 NRSAMFPQEIVIDVAVNEIGVLQNAINQVSGREVKFLINVRAERAKYLTLAKANAKASLT 405 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 K+++ ++ Q + K + R+E +D SH G V VV G ++YR Sbjct: 406 SKIASSLTAQDRINSLEKILNIK-DIHRMECFDISHTQGELTVASCVVFDREGPDTSRYR 464 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 +FN+ + DD A M VL RRF + PD+V +DGG Sbjct: 465 RFNIEG--ITPGDDFAAMHQVLTRRFK----------------DPDHSEIPDLVFIDGGP 506 Query: 474 GQLSAAQGVLKKLNVENR---ITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYF 529 GQL A+ VL + + + I+++AKG R G+E + E L++ DP L Sbjct: 507 GQLKQAEEVLTESFLHAKSSLPKIVAVAKGEGRKEGLETLIMGFTHERYHLDLSDPALQL 566 Query: 530 IQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 I +RDE+HRFAIT HR RR KA S L+ I G+G R++ LLQ G + + R+ + Sbjct: 567 ILHIRDESHRFAITGHRGRRSKARRTSALEGIEGVGTKRRQALLQHLGGRQEVMRAGVDE 626 Query: 589 LASIEGISKKIACKIYNHFH 608 LA + GISK +A KIY+ H Sbjct: 627 LAKVPGISKALAQKIYDALH 646 >gi|33596393|ref|NP_884036.1| putative excinuclease ABC subunit C [Bordetella parapertussis 12822] gi|33566162|emb|CAE37066.1| putative excinuclease ABC subunit C [Bordetella parapertussis] Length = 590 Score = 495 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 211/606 (34%), Positives = 323/606 (53%), Gaps = 28/606 (4%) Query: 13 YQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLL 72 Y+ LD AG V+YVGKA +L+KR+ SY N + RI M++++ ++ TVT +E EALLL Sbjct: 2 YRHLDAAGEVMYVGKARDLKKRVSSYFQKNLASPRIAQMVAKVASVDVTVTRSEAEALLL 61 Query: 73 EANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVE 132 E N+IK L+PR+NIL RDDKS+PY+LIT H P + +R +++ +G YFGP+ + AV Sbjct: 62 ENNLIKSLRPRYNILFRDDKSYPYLLIT-GHAWPRIAYYRGATSKRGQYFGPYPNSWAVR 120 Query: 133 KTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLS 192 +TI LQ+ F LR+C D+VF +R+RPCLL QI RCS PC G I + Y V A +FL+ Sbjct: 121 ETIQILQKVFRLRTCEDTVFANRSRPCLLHQIGRCSAPCVGVIEAGDYAHDVQRAVRFLN 180 Query: 193 GGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNRMDCFSLYH 249 G + ++I M QA+ + +E A + RD++ +LS + + + + D ++ Sbjct: 181 GEAREVMDEIEARMLQASTELRFEEAAVLRDQMGSLSKVLHQQTMENVGGDDTDVIAVAS 240 Query: 250 NKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEA 309 C+ G++ G FF AQ+L F+ Q Y D P ++ S Sbjct: 241 AGGKICVNLAMVRGGRHLGDKPFFPTHAEGEQPAQVLEAFVAQHYADGAMPPVLVCSHAL 300 Query: 310 EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDF 369 ++ L+ + + ++ QG +R +EQA NA + + L+ + Sbjct: 301 PDSGLVGLLAEQGGTRAARVLTRPQGVRRSWLEQAQKNAEMALARALTESGARAGRTLAL 360 Query: 370 TKKFALPHIPK-----RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424 + L + RIE +D SH G + VV + + YR++N+ + Sbjct: 361 AEALDLDTDEESLDALRIECFDISHTAGEATQASCVVFLHHDMQPSLYRRYNIVG--ITP 418 Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484 DD A MR VL RRF ++ E P +V++DGGKGQ+ A+ V Sbjct: 419 GDDYAAMRQVLTRRFGKVADGE--------------APMPGLVLIDGGKGQVEVARQVFV 464 Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAIT 543 +L ++ + +++ +AKG R G+E G + L L I ++RDEAHRFAIT Sbjct: 465 ELGLDIQ-SLVGVAKGEGRKVGLETLVFADGRPPVALGKESAALMLIAQVRDEAHRFAIT 523 Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 R RR K S L+EI GIG R++ LL FG + +S +S E LAS+EGIS+++A + Sbjct: 524 GMRARRAKTRNVSRLEEIEGIGARRRQRLLARFGGLSGVSSASIEDLASVEGISQELAVR 583 Query: 603 IYNHFH 608 IY+ H Sbjct: 584 IYDALH 589 >gi|305680794|ref|ZP_07403601.1| excinuclease ABC, C subunit [Corynebacterium matruchotii ATCC 14266] gi|305658999|gb|EFM48499.1| excinuclease ABC, C subunit [Corynebacterium matruchotii ATCC 14266] Length = 666 Score = 495 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 195/660 (29%), Positives = 309/660 (46%), Gaps = 61/660 (9%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA NL+ R+ +Y H R HM++ N + +TV Sbjct: 11 NVPTDPGVYKFRDPTGRVIYVGKAKNLRARLATYFHDLTQLHPRTRHMVTTANQVEWTVV 70 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +EVEAL LE IK+ P FN+ RDDK++P + I+ IP + HR YFG Sbjct: 71 GSEVEALQLEYTWIKKYDPHFNVKYRDDKTYPSLAISIGEPIPRAFFHRGPRKAGIRYFG 130 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ AV +T++ L R F +R+C V+ RPCLL I +CS PC G I+ + Sbjct: 131 PYSHAWAVRETLDLLIRIFPVRTCTKGVYNRHEKLGRPCLLGYIDKCSAPCVGRITETDH 190 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 V + FL+G + K+ M A + D+E A RD LAA+ + + Sbjct: 191 RRIVDDLCAFLAGRTSPITTKLETEMQAAAAELDFERAARIRDNLAAIIALTEQQAIVLP 250 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST--NAQILSYFLRQFYT 295 D ++ ++ A IQ G+ +G + ++ + + Q++ FL +FY+ Sbjct: 251 DGTDADVIAIDTDELEAAIQLFHIRAGRVKGQRGWVVERTDDHDGGSEQLMQDFLIRFYS 310 Query: 296 DKP--------------------------------CPENILLSEEAEETSLLEISFFKQY 323 D P +IL+ + E + + Sbjct: 311 DAADQEQTVRDSEEKAIKRRGVDNYVPIDTTATSVVPHDILVEIPPADIPHTEAALSQLR 370 Query: 324 GYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE----ISHQMILKDFTKKFALPHIP 379 G V+I PK+G+K+ ++ NA + Q + L++ LP P Sbjct: 371 GGPVRIKTPKRGDKKTLMTTVHRNATEALKQHKLKRVGDLTARSAALQELQNSLFLPEAP 430 Query: 380 KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERR 438 RIE D SHI G V +VV + K+ YR++ + DD A + V RR Sbjct: 431 LRIECTDISHIQGTDVVASLVVFEDGLPKKSDYRRYKITDAAGDGHSDDVASIAEVTRRR 490 Query: 439 F------SQLIKNEENLNFHPKKQEYS--FPSWPDVVILDGGKGQLSAAQGVLKKLNVEN 490 F S+ + + F +K + S F P + I+DGG Q++AAQ VL +L + + Sbjct: 491 FLRHHLDSRTVPELDGSQFEDEKPQTSNKFAYSPQLFIVDGGAPQVAAAQQVLDELGITD 550 Query: 491 RITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK 550 + +I IAK + E + + L+L L+ IQ +RDEAHRFAIT HR++R Sbjct: 551 -VPVIGIAKRLE-----EIWVAGEKYPLILPRHSQALFLIQHIRDEAHRFAITFHRQQRS 604 Query: 551 -KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + S LD I G+G R+ L++ FG+VK + ++S + +++G ++A +Y+ H Sbjct: 605 ARMRRSELDNIKGLGAARRTELVKHFGSVKQLRQASVADITAVKGFGPQLAQNVYDALHP 664 >gi|50954813|ref|YP_062101.1| excinuclease ABC subunit C [Leifsonia xyli subsp. xyli str. CTCB07] gi|71658762|sp|Q6AF49|UVRC_LEIXX RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|50951295|gb|AAT88996.1| excinuclease ABC subunit C [Leifsonia xyli subsp. xyli str. CTCB07] Length = 656 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 177/654 (27%), Positives = 305/654 (46%), Gaps = 58/654 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + ++P PGVY+ D RVLYVGKA NL+ R+ +Y + R M++ ++ + Sbjct: 10 KAGEIPTQPGVYRFRDKTRRVLYVGKAKNLRARLSNYFQPLRSLHERTRRMVTTAASVEW 69 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV +E EAL LE IK P FN+ RDDKS+PY+ +T +IP + R+ Sbjct: 70 TVVGSEFEALQLEYTWIKEYNPPFNVQFRDDKSYPYLAVTLGERIPRVLVTRNRIAKGAR 129 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP+ V A+ T++ + + F +RSC+D V+R RPCLL I +C+GPC G ++ Sbjct: 130 YFGPYTKVWAIRDTVDLMLKAFPVRSCSDGVYRRAELTGRPCLLGDIGKCAGPCVGRVTP 189 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E++ + F++G + + M QA DYE+A HRD + AL + Sbjct: 190 EEHRRLAEDFVSFMAGDDSKHIRDLTEKMKQAAGTMDYEAAARHRDAIQALEAAMGKSAV 249 Query: 238 IYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D F + H++ A +Q G+ RG ++ + + + +++ ++ Y Sbjct: 250 VLQDNVDLDAFGIGHDELAAAVQQFIVRGGRIRGVRSWVVDKELDVELGELIETVMQNAY 309 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKV-------------------KITVPKQG 335 P +L + + + ++ ++ V ++G Sbjct: 310 EGADAPPREILVPVLPDDAAELGQWLTGRRHENSGGGVSDPAATRGRLSGRVELKVAQRG 369 Query: 336 EKRKIIEQALINAHRSHTQKLSTEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM 391 +K + + A +NA + + S D + P R+E YD SH+ Sbjct: 370 DKAALAQTAEMNAKNALILYKTRRSSDFVARSKAFSDIQDALGMEDAPLRMECYDVSHLS 429 Query: 392 GCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN------ 445 + V MVV + K+QYR+F++ + DD + V+ RR + L K Sbjct: 430 RTNIVASMVVFEDGLPRKDQYRRFSIPESA----DDTESIYQVISRRLAYLRKEPPVEAL 485 Query: 446 ------------EENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRIT 493 + +++ F P+++I+DGG+ Q++AA+ L++ V + Sbjct: 486 TPANGHDLATDLDAEAVEAAERRRKKFAYPPNLLIVDGGQPQVAAARRALEESGVSG-VH 544 Query: 494 IISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA 553 + IAK + E + ++L L+ IQR+RDEAHRFAIT R RRK+ Sbjct: 545 LAGIAKRLE-----EVWLPGSDFPVILPRNSDALFLIQRIRDEAHRFAITYQRSRRKRDI 599 Query: 554 YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + L EI G+GP R + LL+ FG+V + +++PE +A + G+ ++A ++ Sbjct: 600 TTVLGEIPGLGPARVKELLKHFGSVAQLRKAAPEEIAEVRGVGLRLAAAVFERL 653 >gi|148982308|ref|ZP_01816706.1| excinuclease ABC subunit C [Vibrionales bacterium SWAT-3] gi|145960542|gb|EDK25901.1| excinuclease ABC subunit C [Vibrionales bacterium SWAT-3] Length = 588 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 198/607 (32%), Positives = 321/607 (52%), Gaps = 31/607 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M + V+YVGKA NL+KR+ SY + + ++S I+ I TVT TE EAL+LE Sbjct: 1 MYNAEAVVIYVGKAKNLKKRLSSYFRKKVDSEKTRALVSNIDKIDVTVTHTETEALILEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK+ P++N+LLRDDKS+PYI I+ HK P L HR + +G YFGP+ AV +T Sbjct: 61 NYIKQYLPKYNVLLRDDKSYPYIFIS-GHKHPRLSMHRGAKKKKGEYFGPYPDSGAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYMEFVHEAKKFLSG 193 ++ +Q+ F R C D+V+ +RTRPCL++QI RC+ PC IS E+Y E V + FL G Sbjct: 120 LHLIQKIFPARQCEDTVYANRTRPCLMYQIGRCAAPCVSSIISDEEYSELVDYVRLFLQG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHN 250 + + E + M+ A+ + +E A RD++ A+ +Q + MD Sbjct: 180 KDKLVLETLIEKMDTASRELRFEQAATFRDQIQAIRRVQEQQYVSDDSMEDMDVLGFAQE 239 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLS 306 +ACI G+ G+ + F K + + ++ S FL Q+Y + P ++L+ Sbjct: 240 NGVACIHILMIRQGKVLGSRSHFPKIPNNTVREEVFSSFLSQYYLAHNEARTIPTRLILN 299 Query: 307 EEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365 + E+ + ++ + + G K+ G + + ++ + NA + T K++ +++ Sbjct: 300 ADLMEDVTPIQEALCEVAGRKIHFNTNPSGVRGRYLKLSNTNALTAITTKINHKMTINQR 359 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 K+ + ++ I R+E +D SH MG S + VV + G VK +YR++N+ + Sbjct: 360 FKELQEVLSMDAIK-RMECFDISHTMGESTIASCVVFNQEGPVKPEYRRYNI--TGITGG 416 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD A M LERR+S+ + ++ PD++ +DGGKGQL+ A ++ + Sbjct: 417 DDYAAMAQALERRYSKQLDVDK---------------IPDIIFIDGGKGQLNRAHEIISQ 461 Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 + R ++ IAKG R G+E +GE L P L+ IQ +RDE+H AI Sbjct: 462 YWGDWPFRPRMMGIAKGVTRKPGLETLITLEGEEFNLPSDAPALHLIQHIRDESHNHAIA 521 Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR +R K S L+ I GIGP R++ LL+ G ++ + R++ E +A + GIS +A Sbjct: 522 GHRAKRGKTRRTSALEGIEGIGPKRRQALLKYMGGLQELKRATVEEIAKVPGISHSLAEN 581 Query: 603 IYNHFHK 609 IY + Sbjct: 582 IYQALKQ 588 >gi|331000291|ref|ZP_08323974.1| excinuclease ABC, C subunit [Parasutterella excrementihominis YIT 11859] gi|329572323|gb|EGG53981.1| excinuclease ABC, C subunit [Parasutterella excrementihominis YIT 11859] Length = 650 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 211/620 (34%), Positives = 334/620 (53%), Gaps = 34/620 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PGVY+ D G +LYVGKA +L++R+ SY R M+ QI + + TV Sbjct: 47 LKNLPHLPGVYRYFDKDGNLLYVGKARDLKRRVSSYFQKT-LAPRTKLMVDQIASAQITV 105 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +E EAL+LE+N+IK PRFNIL RDDKS+PY+ ++ P L +R + + SYF Sbjct: 106 VNSEAEALILESNLIKTQDPRFNILFRDDKSYPYLKLSSGE-YPRLSYYRGALDKRNSYF 164 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +A + T+ LQ+ F LR+C SVF +R+RPCLL+QI RCSG C ++S E+Y + Sbjct: 165 GPYPNANAAKDTMLLLQKVFQLRTCETSVFNNRSRPCLLYQIGRCSGGCCKKVSPEEYGK 224 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242 V AK+FL G + ++E + R MN+ + K D+E A + RD LAA+S++ + Sbjct: 225 SVDLAKEFLRGDSQKVQEDLTRRMNEYSQKLDFERAAVMRDHLAAISNVIHQQSMEAAPD 284 Query: 243 ---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFL---KTDSESTNAQILSYFLRQFYTD 296 D + + C+ G++ G F + ++L F+ YT Sbjct: 285 ANADIIAAVAAQGEVCVNLAMVRGGRHLGDKASFPSLGRNAELPELEEVLEAFITHHYTQ 344 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P ++++ E E + +E G KV + Q +RK +E A+ NA S +K+ Sbjct: 345 MDVPPVVIINLE-ERSPRIEELLNTIAGKKVSVIYRPQNIRRKWLELAVTNAKVSLGRKV 403 Query: 357 STEISHQMILKDFTKKFALP-----HIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 + E S + + ++ L + R+E +D SH G + VV N +Q Sbjct: 404 AEEGSQKKRIGALVQELGLDIPESEYEDFRVECFDISHSSGEATQASCVVFAGNRMDSSQ 463 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YR+FN+ V DD A M+ VL RR+ ++ E + P++V++DG Sbjct: 464 YRRFNIKD--VTAGDDYAAMKQVLTRRYQRVANGE--------------ATLPNIVLVDG 507 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK--GEALVLNMRDPILYF 529 G+GQ+ A V +L ++ + I+ +AKG R G+E+ E L L P L Sbjct: 508 GRGQVKMACEVFDELGLDKNV-IVGVAKGEGRKVGLEELVFPDPNKEPLKLGQESPALML 566 Query: 530 IQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 I ++RDEAHRFAIT R +R KA YS ++++ G+G R++ LL+ FG++K++S +S E Sbjct: 567 IAQIRDEAHRFAITGMRAKRAKARNYSRIEDLEGVGSKRRQKLLERFGSLKVLSNASVED 626 Query: 589 LASIEGISKKIACKIYNHFH 608 +AS++GIS+ +A +IY H Sbjct: 627 IASVDGISQTLARQIYAQLH 646 >gi|229525822|ref|ZP_04415227.1| excinuclease ABC subunit C [Vibrio cholerae bv. albensis VL426] gi|229339403|gb|EEO04420.1| excinuclease ABC subunit C [Vibrio cholerae bv. albensis VL426] Length = 588 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 202/607 (33%), Positives = 318/607 (52%), Gaps = 31/607 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M + V+YVGKA +L+KR+ SY N + + ++S I I TVT TE EAL+LE Sbjct: 1 MYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTVTHTETEALILEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK+ P++++LLRDDKS+PYI ++ HK P L HR + +G YFGP+ AV +T Sbjct: 61 NYIKQYLPKYSVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKKRRGEYFGPYPDSGAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193 ++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC IS + Y E VH + FL G Sbjct: 120 LHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQEIVHYLRLFLQG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHN 250 ++ + + M QA+ + +E A RD++ A+ +Q + +D Sbjct: 180 KDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDSLEDLDVLGFAQE 239 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLS 306 +ACI G+ G+ + F K S+++ ++ FL Q+Y + P I+L+ Sbjct: 240 NGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHSEARSIPARIILN 299 Query: 307 EEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365 EET L+ + + G KV V G + + ++ A NA + T K++ +++ Sbjct: 300 RGLTEETEALQTAISELAGRKVTFHVNPTGTRGRYLKLANTNALTAITTKINHKMTISQR 359 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 K ++ + I R+E +D SH MG S + VV + G +K +YR++N+ + Sbjct: 360 FKALQEELGMDAIT-RMECFDISHTMGESTMASCVVFNQEGPLKQEYRRYNI--TGITGG 416 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD A M VLERR+S+ + PD++ +DGGKGQ + A ++ Sbjct: 417 DDYAAMAQVLERRYSKQLD---------------SSKIPDIIFIDGGKGQRNRAYEIISS 461 Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 + II IAKG R G+E G+ L P L+ IQ +RDE+H AI Sbjct: 462 CWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQHIRDESHNHAIA 521 Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR +R K S L+ I G+GP R++ LL+ G ++ + R+S E +A + GIS +A Sbjct: 522 GHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPGISHALAEN 581 Query: 603 IYNHFHK 609 IY + Sbjct: 582 IYQALKQ 588 >gi|197334859|ref|YP_002156447.1| excinuclease ABC, C subunit [Vibrio fischeri MJ11] gi|197316349|gb|ACH65796.1| excinuclease ABC, C subunit [Vibrio fischeri MJ11] Length = 587 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 197/605 (32%), Positives = 312/605 (51%), Gaps = 31/605 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M + V+YVGKA +L+KR+ SY SN + + ++S I+ + TVT +E EAL+LE Sbjct: 1 MYNAEADVIYVGKAKDLKKRLSSYFRSNVPSEKTKALVSHIHQVDVTVTHSETEALILEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK+ P++N+LLRDDKS+PYI I+ +HK P + HR +G YFGP+ AV ++ Sbjct: 61 NYIKQYLPKYNVLLRDDKSYPYIFIS-QHKHPRISIHRGVKRKKGEYFGPYPDSGAVRES 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHEAKKFLSG 193 ++ +Q+ F +R C DSV+ +R RPCL+ QI RC PC +S E+Y E + FL G Sbjct: 120 LHLIQKLFPIRQCEDSVYANRHRPCLMHQIGRCLAPCVKGIVSDEEYKEQTDFIRLFLQG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDC---FSLYHN 250 + + + + M+ A+ ++E A I RD++ A+ +Q + D Sbjct: 180 KDRQVIQTLVEQMDIASQSLNFEKAAIIRDQIQAMRRVQEQQYVSDDSGDDLDVLGFAIE 239 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLS 306 LAC+ G+ G+ +FF K + + ++ FL Q+Y + + P ++ S Sbjct: 240 NGLACVHLLMIRQGKILGSRSFFPKIPANTDKEEVFLSFLTQYYLNHTQGRTIPNRVVTS 299 Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366 E SL + PK + R + + A NA + T K + +++ Sbjct: 300 FEFNSDSLEAALTELSGRKVIFQLNPKGMKGRYL-KLADTNALTALTSKSNHKLTMYQRF 358 Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426 K + L I R+E +D SH MG V VV + G VK++YR++N+ + + D Sbjct: 359 KQLEEALVLSSIL-RMECFDISHTMGEKTVASCVVFNQEGPVKSEYRRYNI--SGITGGD 415 Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486 D A M VLERR+S+ + ++ PD++ +DGGKGQL+ A V+ K Sbjct: 416 DYAAMAQVLERRYSKQLDIDK---------------IPDIIFIDGGKGQLNRAYEVISKH 460 Query: 487 --NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544 + + ++ IAKG R G+E GE + P L+ IQ +RDE+H AI Sbjct: 461 WEDWPKQPLLLGIAKGVTRKHGLETLVKISGEEFSMPSDSPALHLIQHIRDESHNHAIGG 520 Query: 545 HRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 HR +R K S L I+G+GP R++ LLQ G ++ + +S E +A + GIS +A KI Sbjct: 521 HRAQRAKVRKTSTLQNIDGVGPKRRQALLQYLGGLQELKSASVEEIAKVPGISHSLAEKI 580 Query: 604 YNHFH 608 ++ Sbjct: 581 HDALK 585 >gi|321312382|ref|YP_004204669.1| excinuclease ABC subunit C [Bacillus subtilis BSn5] gi|320018656|gb|ADV93642.1| excinuclease ABC subunit C [Bacillus subtilis BSn5] Length = 590 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 176/613 (28%), Positives = 307/613 (50%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D V+YVGKA L+ R++SY + H + ++++I + + VT + Sbjct: 12 LPDQPGCYLMKDRQQTVIYVGKAKVLKNRVRSYFTGS-HDAKTQRLVTEIEDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++N++L+DDK++P+I +T + P L R+ +G YFGP+ Sbjct: 71 NLEALILEMNLIKKHDPKYNVMLKDDKTYPFIKLT-HERHPRLIVTRNVKKDKGRYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A +T L R + LR C+ + R CL + + +C PC +IS E E V Sbjct: 130 PNVQAARETKKLLDRLYPLRKCS----KLPDRVCLYYHLGQCLAPCVKDISEETNRELVE 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 +FL GG + +K+++ M++A ++E A RD++A + N Sbjct: 186 SITRFLRGGYNEVKKELEEKMHEAAENLEFERAKELRDQMAHIESTMEKQKMTMNDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ ++K C+Q F G+ E+ + + P+ Sbjct: 246 DVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPLYQEADEEFLTFIGQFYSKNNHFLPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 IL+ + +++ + ++ + + PK+G K++++ A NA + + Sbjct: 306 ILVPDSVDQSMIEQLL-------ETNVHQPKKGPKKELLMLAHKNAKIALKEKFSLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E ++ + + + P RIE +DNS+I G + V M+V + K +YRK+ + Sbjct: 359 EERSIGAVQKLGEALNI-YTPHRIEAFDNSNIQGTNPVSAMIVFIDGKPYKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V DD MR V+ RR++++++ PD++I+DGGKGQ++A Sbjct: 418 T--VTGPDDYGSMREVVRRRYTRVLREN--------------LPLPDLIIIDGGKGQINA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ V++ +L ++ I I +AK K E + L Y +QR++DE Sbjct: 462 ARDVIENELGLD--IPIAGLAKDEKHRTSN-LLIGDPLEVVYLERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAI+ HR+ R K+A+ S LD+I GIG RK++LL+ FG+VK + +S E + G+ Sbjct: 519 HRFAISFHRQIRGKSAFQSVLDDIPGIGEKRKKMLLKHFGSVKKMKEASLEDIKKA-GVP 577 Query: 597 KKIACKIYNHFHK 609 A +Y+ K Sbjct: 578 AAAAQLLYDKLQK 590 >gi|295110698|emb|CBL24651.1| excinuclease ABC, C subunit [Ruminococcus obeum A2-162] Length = 616 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 192/627 (30%), Positives = 316/627 (50%), Gaps = 36/627 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M D ++YVGKA +L+ R++ Y S+ N +I M++ I + Sbjct: 7 ELKKLPAKPGVYLMHDERDEIIYVGKAISLKNRVRQYFQSSRNKGAKIEQMVTHIARFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE+N+IK +P++N +L+DDKS+P+I +T + P + R + Sbjct: 67 IITDSELEALVLESNLIKEHRPKYNTMLKDDKSYPFIKVTVQEAYPRVLFARRMKKDKNR 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV+ I +++ + +RSC ++ R + RPCL + +K+C GPCTG Sbjct: 127 YFGPYTSGGAVKDVIELVRKLYQVRSCNRNLPRDCGKDRPCLYYHMKQCMGPCTGHADQR 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y E + + FL+G + +++A M +A+ + +E A RD + ++ I Sbjct: 187 VYKENIRKVLAFLNGDFQDTIDQLAEKMQKASDEMRFEDAAEARDLIRSIQKIGERQKIT 246 Query: 239 Y---NRMDCFSLYH------NKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYF 289 D + + A +Q F G+ G F+L+ T +Q+LS F Sbjct: 247 SYGEEDRDIIACDMDESLDLREQDAVVQVFFMRDGRLIGRDHFYLRVARGDTRSQVLSSF 306 Query: 290 LRQFYTDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA 348 ++QFY P P I L E E+ ++E + KV+I VPK+G K K++E A NA Sbjct: 307 VKQFYAGTPFIPGEITLQTEIEDAEIIEEWLTSRRKQKVRIVVPKKGTKEKLVELAWENA 366 Query: 349 HRS----HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGE 404 + E + + + + R+E +D S+I G +VG MVV + Sbjct: 367 RMVLEKDRERIRREEGRTIGAVHEVEDWLGMKGLD-RMEAFDISNISGFESVGSMVVYEK 425 Query: 405 NGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWP 464 K+ YRKF + V+ +D A M VL RRF+ + SF P Sbjct: 426 GKPKKSDYRKFRI--QSVQGPNDYASMEEVLTRRFTH----------ESNGEFDSFAKMP 473 Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524 D++++DGG+GQ++ A GVL KL + +I + + K F + ++ Sbjct: 474 DLLLMDGGRGQVNIALGVLDKLGI--QIPVCGMVKDDHHRTRGLYF---NNIEIPIDTNS 528 Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583 I R++DEAHRFAI HR R K +S LD+I GIG R++ L++ + +++ I Sbjct: 529 EGFRLITRIQDEAHRFAIEYHRSLRSKEQVHSILDDIPGIGERRRKALMRRYRSIEGIRD 588 Query: 584 SSPETLASIEGISKKIACKIYNHFHKN 610 +S E LA E ++ A ++Y+ FH N Sbjct: 589 ASVEELAETESMNMGSAKQVYDFFHPN 615 >gi|254409654|ref|ZP_05023435.1| excinuclease ABC, C subunit [Microcoleus chthonoplastes PCC 7420] gi|196183651|gb|EDX78634.1| excinuclease ABC, C subunit [Microcoleus chthonoplastes PCC 7420] Length = 675 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 198/662 (29%), Positives = 306/662 (46%), Gaps = 62/662 (9%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFT 61 +++P PGVY M D + R+LY+GK+ L+ R++SY + + RI M+ Q+ I F Sbjct: 21 LKEIPAEPGVYLMRDGSDRILYIGKSKKLRSRVRSYFRNTQPLSPRIAMMVRQVVEIEFI 80 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS--STIQG 119 VT TE E+L LEAN++K+ +P FN+LL+DDK +PYI IT P ++ R + Sbjct: 81 VTDTEAESLALEANLVKQHQPYFNVLLKDDKKYPYICITWSEDYPRIFITRKRNLRKEKD 140 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 Y+GP+ V + T++ L++ F R +F + RPCL + I RC G C +S ++ Sbjct: 141 RYYGPYVDVGLLRSTLHLLKQIFPQRQRPRPLF--KDRPCLNYDIGRCPGVCQQLVSPQE 198 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + V + G L + +++NM QA ++E A RD++ L+ + Sbjct: 199 YRQMVQKMAMVFQGRTGELIDILSKNMEQAAESLNFELAAKIRDQIKGLNALSADQKVAL 258 Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS-ESTNAQILSYFLRQFY 294 D SL + N ACIQ G+ G FF + S IL L Y Sbjct: 259 PDDTVSRDAISLAADANHACIQLFQIRAGRLVGRLGFFAEVPSGGIELGAILQRVLEDHY 318 Query: 295 TDKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 P IL+ + +T LL ++ G KV I VP++ K ++IE NA Sbjct: 319 QTVDAVEIPSEILVQHQLTDTELLAEWLSERKGRKVTILVPQRQTKAELIEMVERNAKYE 378 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 + + + D L +P RIE YD SHI G + V VV K Sbjct: 379 LERTQKFADRNSQAMHDLAAILDLSDLPHRIEGYDISHIQGANPVASQVVFINGTPAKQH 438 Query: 412 YRKFNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSF--------- 460 YR + + V DD A + V+ RRF + L Q + Sbjct: 439 YRHYKIKNPTVTIGHSDDFASLAEVIRRRFRKYKDVGAGLTDTISPQTDNLTKPALSNHQ 498 Query: 461 --------------------------------PSWPDVVILDGGKGQLSAAQGVLKKLNV 488 +PD++++DGGKGQLSA VL+ +N+ Sbjct: 499 ENPDVGAGLTDTISPQTHNLTKPALSREQGISNDFPDLIMIDGGKGQLSAVVAVLQDMNL 558 Query: 489 ENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKR 548 +++ ++S+AK + E F + L + P + ++RLRDEAHRFA++ HR++ Sbjct: 559 LDKVRVVSLAKQRE-----EIFLPGESLPLPTDAEQPGVQLLRRLRDEAHRFAVSFHRQQ 613 Query: 549 RKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 R S LDEI G+G R++ LL F ++ I +S + LA + GI ++A IY +F Sbjct: 614 RSNTLRRSRLDEIPGLGFARQKQLLAHFRSIDYIREASVQQLAEVPGIGSRLAEDIYTYF 673 Query: 608 HK 609 H Sbjct: 674 HP 675 >gi|258652974|ref|YP_003202130.1| excinuclease ABCsubunit C [Nakamurella multipartita DSM 44233] gi|258556199|gb|ACV79141.1| excinuclease ABC, C subunit [Nakamurella multipartita DSM 44233] Length = 679 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 188/658 (28%), Positives = 304/658 (46%), Gaps = 68/658 (10%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +PE PGVY+ D GRV+YVGKA +L++R+ SY R M++ ++ +TV Sbjct: 13 TIPESPGVYKFRDPKGRVIYVGKAKSLRQRLNSYFADIAALHPRTRQMVTSAGSVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE N IK PRFN+ RDDKS+P++ +T + P L R + YFG Sbjct: 73 STEVEALQLEYNWIKEFDPRFNVRYRDDKSYPFLAVTVGEEYPRLQVMRGAHRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P+A A+ +T++ L R F R+C+ VFR RPCLL I +CS PC G +S++++ Sbjct: 133 PYAHAWAIRETLDLLLRVFPARTCSAGVFRRSAQIGRPCLLGYIGKCSAPCVGRVSAQEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E V F++G L ++ + M A D+E A RD L+A+ ++ Sbjct: 193 REIVEGFCDFMAGKADPLIRRLEKQMTAAAADLDFERAARLRDDLSAVRRAVEKQAVVFG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE--------STNAQILSYF 289 D + ++ LA +Q G+ RG + + D++ ++ F Sbjct: 253 DGTDADVIGIAADELLASVQLFHVRDGRVRGERGWIVDVDADVDADGNDRDGLPLLVENF 312 Query: 290 LRQFYTD-----------KPCPENILLSEEAEE----TSLLEISFFKQYGYKVKITVPKQ 334 L QFY D P IL+ + + G +V + V ++ Sbjct: 313 LLQFYGDLAADGDAGGPTSSVPREILVPVLPSQDAGTHDEMVDWLSALRGSRVSLRVAQR 372 Query: 335 GEKRKIIEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHI 390 G+KR + E NA + T+ + L + + + P RIE D SH+ Sbjct: 373 GDKRALAETVARNAQEALTRHRLKRAGDLTARSAALSELGETLGMDVAPLRIECIDISHV 432 Query: 391 MGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLN 450 G V +VV + ++ YR+F + DD A + V+ RRF+ + E Sbjct: 433 QGTDVVASLVVFEDGLAKRSDYRRFAIRDK---PGDDVASIAEVVRRRFTHQARAEAGER 489 Query: 451 FHPK------------------------KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486 + F P ++++DGG Q++AA VL +L Sbjct: 490 AEADSTPAPTPTPTPAGSGVPAGIDPTTGRVRRFAYPPQLLVVDGGAPQVNAAATVLSEL 549 Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546 + + IT+ +AK + E + + + ++ LY +QRLRDEAHRFAIT HR Sbjct: 550 GIVD-ITVCGLAKRLE-----EVWLPFQADPVIFPRTSEALYLLQRLRDEAHRFAITYHR 603 Query: 547 KRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 +R K+ S LD + G+G +R++ L++ FG+V + R+ E + + G+ ++ A + Sbjct: 604 AKRSKSMTVSALDNVPGLGEVRRKALVRHFGSVAALRRADVEQILQVPGVGRRTAEAV 661 >gi|328554467|gb|AEB24959.1| excinuclease ABC subunit C [Bacillus amyloliquefaciens TA208] Length = 590 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 178/613 (29%), Positives = 305/613 (49%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D V+YVGKA L+ R++SY + H + ++++I + + VT + Sbjct: 12 LPDQPGCYLMKDRQKTVIYVGKAKVLKNRVRSYFTGS-HDAKTQRLVTEIEDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++N++L+DDK++P+I IT + P L R+ +G YFGP+ Sbjct: 71 NLEALILEMNLIKKYDPKYNVMLKDDKTYPFIKIT-HERHPRLIVTRNVKKDKGRYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A +T L R + LR C+ + R CL + + +C PC +IS E E V Sbjct: 130 PNVQAARETKKLLDRLYPLRKCS----KLPDRVCLYYHLGQCLAPCVKDISEETNRELVE 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 + +FL GG++ +K+++ M +A K ++E A RD+LA + N Sbjct: 186 DITRFLKGGHNEVKKELEEKMTEAAEKLEFERAKEFRDQLAHIESTMEKQKMTMNDLLDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ ++K C+Q F G+ E+ + + P+ Sbjct: 246 DVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPMYQEADEEFLTYIGQFYSKNNHFLPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 IL+ + + + E+ + + PK+G K++++ A NA + + Sbjct: 306 ILVPDSVDRDMISELL-------ETAVYQPKKGPKKELLLLAHKNAKIALREKFSLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E + + + + P RIE +DNS+I G + V M+V + K +YRK+ + Sbjct: 359 EERSIGAAERLGEALNI-YTPHRIEAFDNSNIQGTNPVSAMIVFIDGKPNKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V DD MR V+ RR+S++++ PD++I+DGGKGQ++A Sbjct: 418 T--VTGPDDYGSMREVVRRRYSRVLREN--------------LPLPDLIIIDGGKGQINA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ VL+ +L ++ + + +AK K E + L Y +QR++DE Sbjct: 462 ARDVLENELGLD--VPVAGLAKDDKHRTSN-LLIGDPLEPVFLERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAI+ HR+ R K+A+ S LD+I GIG RK++LL+ FG+VK + +S + + G+ Sbjct: 519 HRFAISFHRQIRGKSAFQSVLDDIPGIGEKRKKMLLKHFGSVKKMKEASLDDIKKA-GVP 577 Query: 597 KKIACKIYNHFHK 609 A ++ K Sbjct: 578 AAAAQMLFEKLKK 590 >gi|326335554|ref|ZP_08201741.1| excinuclease ABC subunit C [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692320|gb|EGD34272.1| excinuclease ABC subunit C [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 600 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 182/624 (29%), Positives = 306/624 (49%), Gaps = 50/624 (8%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + +P+ PGVYQ D ++YVGKA NL+KR+ SY + + + + ++S+I I Sbjct: 6 LQVQTLPDNPGVYQFFDNTDTIIYVGKAKNLKKRVSSYFNKEHDSPKTRVLVSKIVRIEH 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE +ALLLE N+IK+ +PR+NILL+D KS+P+I I++ + P ++ R G+ Sbjct: 66 IVVATENDALLLENNLIKKYQPRYNILLKDGKSYPWICISN-ERFPRVFFTRKVYKDGGT 124 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175 Y+GP+ ++ V ++ ++ + LR+C +++ + + + CL + IK C GPC G Sbjct: 125 YYGPYTNLKIVRTLLDLIKDLYPLRNCRLDLSQENIDKGKYKVCLEYHIKNCKGPCEGLQ 184 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 + E+Y + + K+ L G + M + +E A + +L +L + Q+ + Sbjct: 185 TEEEYNHNIQQIKEILKGNLKEVITYFKEEMLKHAQAFRFEEAQEIKLKLESLENYQSKS 244 Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 + +D FS+ ++ A I G T +K E T+ ++L + + Sbjct: 245 TIVSTKIHNVDVFSIVSDEEYAYINFLQVAHGAIVRGHTLEVKKKLEETDQELLELGIVE 304 Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 L+ L E +T+PK GEK ++++ + NA Sbjct: 305 LRERFKSNSKELIVPFPLSMELSEQ-----------LTIPKAGEKFQLLQLSERNAQAYR 353 Query: 353 TQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 +K E +L + L P IE +DNS+I G + V VV Sbjct: 354 QEKFKQVKITDPERHTNRLLTQMQRDLHLSEPPAHIECFDNSNIQGTNPVAACVVFKNAK 413 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 K YR FN+ V+ +D A M V+ RR+ +L+ EE L P + Sbjct: 414 PSKKDYRHFNIKT--VEGPNDFASMEEVVYRRYRRLLDEEEPL--------------PQL 457 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526 +I+DGGKGQLSAA L+ L++ +I I+ IAK + E F+ L L+ + Sbjct: 458 IIIDGGKGQLSAALKALELLDLRGKIAIVGIAKRLE-----EIFYPGDSVPLYLDKKSET 512 Query: 527 LYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 L IQ LR+EAHRF IT HR++R A +S L++I+G+G + LL+ F +VK + + Sbjct: 513 LKVIQHLRNEAHRFGITFHRQKRSASAIHSELEQISGVGKQTQEALLKHFKSVKRLKEAP 572 Query: 586 PETLASIEGISKKIACKIYNHFHK 609 E + + G+S+ K++ +FH Sbjct: 573 KEEIIACIGLSRT--QKVWEYFHP 594 >gi|313609172|gb|EFR84852.1| excinuclease ABC subunit C [Listeria monocytogenes FSL F2-208] Length = 576 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 176/595 (29%), Positives = 287/595 (48%), Gaps = 41/595 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY + + + ++ +I + + VT + Sbjct: 13 LPDQPGCYLMKDRQGTIIYVGKAKILKNRVRSYFSGTHDS-KTQRLVQEIVDFEYIVTSS 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 VEALLLE N+IK+ PRFNI L+DDK++P+I IT+ + P L R +G YFGP+ Sbjct: 72 NVEALLLEINLIKKHDPRFNIRLKDDKTYPFIKITN-ERHPRLIITRQVKKDKGKYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A + L R + LR C+ + CL + + +C PC ++ + KY E Sbjct: 131 PNVYAANEVKRILDRLYPLRKCSTLP----NKVCLYYHLGQCLAPCVFDVEASKYKEMQD 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E FL+GG +K + + M +A ++E A RD++ A+ N Sbjct: 187 EIVAFLNGGYKTVKNDLMKKMQEAAENMEFEKAGEFRDQINAIETTMEKQKMTMNDFVDR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +++ + + P+ Sbjct: 247 DVFGYAIDKGWMCVQVFFIRQGKLIERDVSQFPFYNDADEDFLTFIGQFYQKANHIPPKE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS----T 358 I L ++ + ++ + KI VP++G K+ +++ A NA + +K Sbjct: 307 IYLPDDVDSEAVQAVVP------DTKIIVPQRGNKKDLVKLAYKNAKIALNEKFMLLERN 360 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E ++ + +P R+E +DNS+I G V MV + KN YRK+ + Sbjct: 361 EERTVGAVERLGEAMGIPTPS-RVEAFDNSNIHGTDPVSAMVTFLDGKPSKNDYRKYKIK 419 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD A MR V+ RR+ +++K PD++++DGGKGQ+ + Sbjct: 420 T--VEGPDDYATMREVIRRRYWRVLKEG--------------LPMPDLILIDGGKGQIDS 463 Query: 479 AQGVL-KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ VL +L ++ I + +AK K F E + L Y +QR++DE Sbjct: 464 AKDVLTNELGLD--IPVAGLAKDDKHRTSQ-LLFGDPLEIVPLERNSQEFYLLQRMQDEV 520 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 HRFAIT HR+ R K S LD I G+GP RK+ LL+ FG++K + +S E + Sbjct: 521 HRFAITFHRQLRSKTGFQSILDGIPGVGPGRKKKLLKHFGSMKKLKEASVEEIKE 575 >gi|294501464|ref|YP_003565164.1| excinuclease ABC subunit C [Bacillus megaterium QM B1551] gi|294351401|gb|ADE71730.1| excinuclease ABC, C subunit [Bacillus megaterium QM B1551] Length = 588 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 181/613 (29%), Positives = 303/613 (49%), Gaps = 45/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY + H + +++ I + + VT + Sbjct: 12 LPDQPGCYLMKDKYGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVNDIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI+L+DDK +P+I IT K P L R +G YFGP+ Sbjct: 71 NLEALILEMNLIKKHDPKYNIMLKDDKGYPFIKIT-AEKQPRLVITRKIKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A +T L R + LR C+ RPCL + I +C PC E+ E+ + + Sbjct: 130 PNVQAANETKRLLDRIYPLRKCSTMP----DRPCLYYHIGQCLAPCVKEVKEEQNKQIIE 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 +FL+GG ++K ++ M +A+ + D+E A +RD++A + +N Sbjct: 186 NITRFLNGGYEHVKTELTEKMLKASEELDFERAKEYRDQIAHIEATMEKQKVTFNDFVNR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F ++K C+Q F G+ + F+ QFY P+ Sbjct: 246 DVFGYSYDKGWMCVQVFFIRQGKLIEREVSMF--PFYKEPEEDFLTFIGQFYAKNIKPKE 303 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 +++ + ++ + + PK+G+K++++E A NA + Sbjct: 304 VMVPATIDAELAEKLVEVE-------VQHPKRGKKKELVELACKNAKIALGEKFYLIERD 356 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E ++ ++ + RIE +DNS+I G V M+V + K +YRK+ + Sbjct: 357 EERTVGAVERLGEELRIAAP-YRIEAFDNSNIQGTDPVSAMIVFVDGKPEKKEYRKYKIK 415 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD + MR V+ RR+S+ +K PD++++DGGKG L+A Sbjct: 416 T--VQGPDDYSSMREVVRRRYSRALKEG--------------LPLPDLIVVDGGKGHLAA 459 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 Q VL+ +L + + + K K + + + L Y +QR++DE Sbjct: 460 VQDVLENELGLL--VPTAGLVKDDKHRTSN-LMIGEPPQIIPLERNSQEFYLLQRIQDEV 516 Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R K+A+ S LD+I G+G RK+ LL+ FG+VK + ++ E + + G+ Sbjct: 517 HRFAITFHRQVRSKSAFQSVLDDIPGVGEKRKKALLKYFGSVKKLKEATVEDIRN-SGVP 575 Query: 597 KKIACKIYNHFHK 609 + IA KIY K Sbjct: 576 QNIAEKIYETLQK 588 >gi|291485280|dbj|BAI86355.1| excinuclease ABC subunit C [Bacillus subtilis subsp. natto BEST195] Length = 590 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 176/613 (28%), Positives = 307/613 (50%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D V+YVGKA L+ R++SY + H + ++++I + + VT + Sbjct: 12 LPDQPGCYLMKDRQQTVIYVGKAKVLKNRVRSYFTGS-HDAKTQRLVTEIEDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++N++L+DDK++P+I +T + P L R+ +G YFGP+ Sbjct: 71 NLEALILEMNLIKKHDPKYNVMLKDDKTYPFIKLT-HERHPRLIVTRNVKKDKGRYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A +T L R + LR C+ + R CL + + +C PC +IS E E V Sbjct: 130 PNVQAARETKKLLDRLYPLRKCS----KLPDRVCLYYHLGQCLAPCVKDISEETNRELVE 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 +FL GG + +K+++ M++A ++E A RD++A + N Sbjct: 186 SITRFLRGGYNEVKKELEEKMHEAAENLEFERAKELRDQIAHIESTMEKQKMTMNDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ ++K C+Q F G+ E+ + + P+ Sbjct: 246 DVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPLYQEADEEFLTFIGQFYSKNNHFLPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 IL+ + +++ + ++ + + PK+G K++++ A NA + + Sbjct: 306 ILVPDSVDQSMIEQLL-------ETNVHQPKKGPKKELLMLAHKNAKIALKEKFSLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E ++ + + + P RIE +DNS+I G + V M+V + K +YRK+ + Sbjct: 359 EERSIGAVQKLGEALNI-YTPHRIEAFDNSNIQGTNPVSAMIVFIDGKPYKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V DD MR V+ RR++++++ PD++I+DGGKGQ++A Sbjct: 418 T--VTGPDDYGSMREVVRRRYTRVLREN--------------LPLPDLIIIDGGKGQINA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ V++ +L ++ I I +AK K E + L Y +QR++DE Sbjct: 462 ARDVIENELGLD--IPIAGLAKDEKHRTSN-LLIGDPLEVVYLERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAI+ HR+ R K+A+ S LD+I GIG RK++LL+ FG+VK + +S E + G+ Sbjct: 519 HRFAISFHRQIRGKSAFQSVLDDIPGIGEKRKKMLLKHFGSVKKMKEASLEDIKKA-GVP 577 Query: 597 KKIACKIYNHFHK 609 A +Y+ K Sbjct: 578 AAAAQLLYDKLQK 590 >gi|296331603|ref|ZP_06874072.1| excinuclease ABC subunit C [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675438|ref|YP_003867110.1| excinuclease ABC subunit C [Bacillus subtilis subsp. spizizenii str. W23] gi|296151198|gb|EFG92078.1| excinuclease ABC subunit C [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413682|gb|ADM38801.1| excinuclease ABC subunit C [Bacillus subtilis subsp. spizizenii str. W23] Length = 590 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 176/613 (28%), Positives = 306/613 (49%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D V+YVGKA L+ R++SY + H + ++++I + + VT + Sbjct: 12 LPDQPGCYLMKDRQQTVIYVGKAKVLKNRVRSYFTGS-HDAKTQRLVTEIEDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++N++L+DDK++P+I +T + P L R+ +G YFGP+ Sbjct: 71 NLEALILEMNLIKKHDPKYNVMLKDDKTYPFIKLT-HERHPRLIVTRNVKKDKGRYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A +T L R + LR C+ + R CL + + +C PC +IS E E V Sbjct: 130 PNVQAARETKKLLDRLYPLRKCS----KLPDRVCLYYHLGQCLAPCVKDISEETNRELVE 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 +FL GG +++K+++ M +A ++E A RD++A + N Sbjct: 186 SITRFLKGGYNDVKKELEEKMLEAAENLEFERAKELRDQIAHIESTMEKQKMTMNDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ ++K C+Q F G+ E+ + + P+ Sbjct: 246 DVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPLYQEADEEFLTFIGQFYSKNNHFLPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 IL+ + +++ + ++ + + PK+G K++++ A NA + + Sbjct: 306 ILVPDSVDQSMIEQLL-------ETNVHQPKKGSKKELLMLAHKNAKIALKEKFSLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E + + + + P RIE +DNS+I G + V M+V + K +YRK+ + Sbjct: 359 EERSIGAVHKLGEALNI-YTPHRIEAFDNSNIQGTNPVSAMIVFIDGKPNKREYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V DD MR V+ RR++++++ PD++I+DGGKGQ++A Sbjct: 418 T--VTGPDDYGSMREVVRRRYTRVLREN--------------LPLPDLIIIDGGKGQINA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ V++ +L ++ I I +AK K E + L Y +QR++DE Sbjct: 462 ARDVIENELGLD--IPIAGLAKDEKHRTSN-LLIGDPLETVYLERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAI+ HR+ R K+A+ S LD+I GIG RK++LL+ FG+VK + +S E + G+ Sbjct: 519 HRFAISFHRQIRGKSAFQSVLDDIPGIGEKRKKMLLKHFGSVKKMKEASLEDIQKA-GVP 577 Query: 597 KKIACKIYNHFHK 609 A +Y+ K Sbjct: 578 AAAAQLLYDKLQK 590 >gi|168181969|ref|ZP_02616633.1| excinuclease ABC, C subunit [Clostridium botulinum Bf] gi|237796839|ref|YP_002864391.1| excinuclease ABC subunit C [Clostridium botulinum Ba4 str. 657] gi|259710336|sp|C3KV13|UVRC_CLOB6 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|182674896|gb|EDT86857.1| excinuclease ABC, C subunit [Clostridium botulinum Bf] gi|229262714|gb|ACQ53747.1| excinuclease ABC, C subunit [Clostridium botulinum Ba4 str. 657] Length = 618 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 189/619 (30%), Positives = 311/619 (50%), Gaps = 19/619 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 + +P+ PGVY M + G ++YVGKA L+ R++ Y + H+ ++ M+ I + Sbjct: 7 QLKNLPDKPGVYLMKNNLGEIIYVGKAKILKNRVRQYFQKSQKHSEKVKAMVKNIEEFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE N+IK+ +P++NILL+DDK +P+I +T P + R + Sbjct: 67 IITDSEIEALILECNLIKKYRPKYNILLKDDKHYPFIKVTLAEDFPRVISTRKVTKDGSK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT--RPCLLFQIKRCSGPCTGEISSE 178 YFGP+ +V+ I +++TF +R+C ++ RPCL +QI C PC I Sbjct: 127 YFGPYVDGSSVKDIIELIKKTFPIRTCKKNIVEGAKAIRPCLNYQIGLCKAPCAQYIKKS 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 +Y E + + K LSG + ++ E NM +A ++E A + RD++ + I Sbjct: 187 EYREIIDDVIKLLSGKHLDIVENFKLNMEKAAGNLEFEKAAMLRDKINIIEKIGEKQKII 246 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 ++ D SLY + C Q F G+ G F ++ ++ ++ ++S FL++FY Sbjct: 247 LNNFDNEDYISLYSDGKDTCFQVFFLRNGKIVGREHFIIEDTFDTNSSTLISNFLKEFYG 306 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351 + E+ LLE + K I +P +GEK+ I++ NA Sbjct: 307 GTAYIPKTIYVPNIEDEVLLEQWLTLKKESKSTIKIPIKGEKKNILDLVEKNAKTTLENF 366 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 + L + + +LKD L P RIE +D S+I G +VG MVV + + Sbjct: 367 KLKYLQEKALYDNVLKDLKNILRLQEEPIRIEAFDISNIQGFDSVGSMVVFEKGRAKPSD 426 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILD 470 YR+F N VK DD M+ +L RRF + + + + F +PD++++D Sbjct: 427 YRRF--KINTVKGADDYKSMKEILTRRFQHGLSEIKSIQDRKLEFSSGKFSVFPDLILMD 484 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ++ A VL N+ I + + K K + GE +++N ++ FI Sbjct: 485 GGKGQINIALEVLNTFNI--NIPVCGMVKDNKHRTRG---LIYNGEEIIINKYGSVMKFI 539 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DE HRFAI+ HR R K + +S LD+I IG RK+ LL +F ++ I +++ E L Sbjct: 540 TRVQDEVHRFAISYHRSLRGKNSFHSLLDDIPNIGEKRKKDLLFNFKSIDNIKKATYEEL 599 Query: 590 ASIEGISKKIACKIYNHFH 608 SI + KK A I F Sbjct: 600 LSISSMDKKSAESILEFFK 618 >gi|319763573|ref|YP_004127510.1| excinuclease abc, c subunit [Alicycliphilus denitrificans BC] gi|330824226|ref|YP_004387529.1| excinuclease ABC subunit C [Alicycliphilus denitrificans K601] gi|317118134|gb|ADV00623.1| excinuclease ABC, C subunit [Alicycliphilus denitrificans BC] gi|329309598|gb|AEB84013.1| excinuclease ABC, C subunit [Alicycliphilus denitrificans K601] Length = 652 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 211/644 (32%), Positives = 322/644 (50%), Gaps = 48/644 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PGVY+ D G +LYVGKA NL+KR+ SY + RI HM+ +I + TV + Sbjct: 16 LPPLPGVYRYFDAQGVLLYVGKARNLKKRVSSYFAKQHGGTRIGHMVGKIARLETTVVRS 75 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITD-----------KHKIPALYKHRDS 114 E EALLLE N+IK L P++NIL RDDKS+PY+ IT + P + +R S Sbjct: 76 EAEALLLENNLIKSLGPKYNILFRDDKSYPYLKITGVAEKDGEGDAPGQRYPRIAYYRGS 135 Query: 115 STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE 174 + YFGP+ AV++TI LQ+ F LR+C D+VF +RTRPCLL+QIKRC+ PC G Sbjct: 136 VDKRHRYFGPYPGAWAVKETIQLLQKVFRLRTCEDTVFANRTRPCLLYQIKRCTAPCVGL 195 Query: 175 ISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234 IS E Y V A+ L G L +++ R M + + ++E A R+++ ALS + + Sbjct: 196 ISPEGYAGDVRSAEALLRGETQELLQELERRMLAHSERLEFELAAEVRNQITALSRVLHQ 255 Query: 235 NDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST---------- 281 +D ++ AC+ G++ G +F ++ Sbjct: 256 QAVESVSDKDVDILAVKVAGGRACVNLAMVRGGRHLGDRAYFPVHVEDAAGVFQLEDQEE 315 Query: 282 -----------NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKIT 330 AQ+L F+ Q Y P P ++ S E+ L + +Q G +V Sbjct: 316 GAGAAQPDCPVEAQVLEAFMAQHYLGVPVPPTLITSLPVEQRLL--EALSEQSGVRVTAV 373 Query: 331 VPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPH---IPKRIEIYDN 387 + ++R +E A NA + L+ E S Q + + L IE +D Sbjct: 374 RQPREQRRAWLEMAQQNAEIQLARLLAEEGSQQARTRALAEALDLDAEDLDRFTIECFDI 433 Query: 388 SHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE 447 SH G + VV + ++YR+F + + DD A MR VL RR+S++ + + Sbjct: 434 SHTAGEATQASCVVFHHHKMQGSEYRRF--KIDGITGGDDYAAMRQVLTRRYSKVAEAQR 491 Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507 + + PD+V++DGGKGQ+S A+ V +L ++ I+ + KG R G+ Sbjct: 492 EAGGAEVSDKRA--RLPDLVLVDGGKGQVSMAREVFTELGLDVS-RIVGVEKGEGRKVGL 548 Query: 508 EKFFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--SPLDEINGIG 564 E+ G + L L + ++RDEAHRFAIT R R +A S L++I G+G Sbjct: 549 EELVFADGREKVYLGRDSAALMLVAQIRDEAHRFAITGMRAARARARTGGSRLEDIPGVG 608 Query: 565 PLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 P ++ LLQ FG V+ ++ +S E LA++EGIS +A +IY Sbjct: 609 PKKRARLLQRFGGVRGVADASVEDLATVEGISHGLAEEIYRALR 652 >gi|189347284|ref|YP_001943813.1| excinuclease ABC subunit C [Chlorobium limicola DSM 245] gi|189341431|gb|ACD90834.1| excinuclease ABC, C subunit [Chlorobium limicola DSM 245] Length = 619 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 184/631 (29%), Positives = 289/631 (45%), Gaps = 52/631 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVT 63 +P PGVYQ + +G+V+YVGKA NL+ R++SY + + + M+ I ++ +T Sbjct: 15 TLPTSPGVYQFRNASGKVIYVGKAKNLRNRVRSYFRDSRQLYGKTLVMVGHIADLEVIIT 74 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +EVEAL+LE N+IK LKPR+N+ L+DDK++PY++IT+ P ++ R +FG Sbjct: 75 SSEVEALILENNLIKELKPRYNVNLKDDKTYPYLVITN-EPFPRIFLTRYIKRDGSIWFG 133 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFR-----HRTRPCLLFQIKRCSGPCTGEISSE 178 P+ + ++ + F LRSC + R CL + I +C GPC G S Sbjct: 134 PYTEARQLRLILDLIGSIFPLRSCKHRFTAESIASGKFRVCLDYHIHKCKGPCEGFQSEA 193 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y + + E + L G L + M++ + +E+A R +L +L + Sbjct: 194 DYRQMIEEVVRLLKGRTSGLIRSLTEKMHEHAAELKFEAAAEIRSQLDSLKRYAERQKVV 253 Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D +L ++ AC G+ G+ ++ T +L+ +Y Sbjct: 254 SPDGADRDVIALAAGEDDACAVIFKIREGKLLGSQRIYMNNTGGETETVLLAKAAENYYL 313 Query: 296 D--KPCPENILLSE--------EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQAL 345 + P+ ILL + + ++I VP+ GEK +++ Sbjct: 314 ETIDTIPDEILLQHTLVAENEETLKSFVAAKKLAEPGRKTAIRIVVPQIGEKAHLLDMCH 373 Query: 346 INAHRSHTQKLSTEISH------QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCM 399 NA + L + L D + L P+RIE +DNSH G V M Sbjct: 374 RNARHHLEEYLIQKQKRGEAAREHAGLNDLQELLHLEKPPERIECFDNSHFQGTDYVSSM 433 Query: 400 VVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS 459 V K++YRKF L ++ DD A M VL RR++ + E Sbjct: 434 VCFVHGKPKKSEYRKFRLRT--IEGSDDYAAMEEVLNRRYTGSLAEE------------- 478 Query: 460 FPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALV 519 +PD++++DGGKGQ++ A +L + + I +I +AK + E F + Sbjct: 479 -LPFPDLIVVDGGKGQVNIAHRILAESGL--NIPVIGLAKRLE-----EIFLPHVSDPFN 530 Query: 520 LNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTV 578 L P L +Q+LRDEAHRFA+T HRK R + + L I GIG LLQ FG+V Sbjct: 531 LPKTSPALRMLQQLRDEAHRFAVTYHRKLRSERTLQTELTAIAGIGEKTAHKLLQHFGSV 590 Query: 579 KMISRSSPETLASIEGISKKIACKIYNHFHK 609 K IS +S E L S G + A KI+ +H Sbjct: 591 KRISEASLEDLVSAAG--RNTAEKIHRVYHP 619 >gi|171058615|ref|YP_001790964.1| excinuclease ABC subunit C [Leptothrix cholodnii SP-6] gi|170776060|gb|ACB34199.1| excinuclease ABC, C subunit [Leptothrix cholodnii SP-6] Length = 692 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 210/654 (32%), Positives = 319/654 (48%), Gaps = 66/654 (10%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+ D ++LYVGKA +L+KR+ SY H ++ RI HM+ +I+ I TV Sbjct: 55 SLPSLPGVYRYFDAGNQLLYVGKALSLKKRVSSYFHKDHGGSRIGHMVGKIHRIETTVVR 114 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK PRFNIL RDDKS+PY+ + H+ P + R + + YFGP Sbjct: 115 SEAEALLLENNLIKTQNPRFNILFRDDKSYPYLKL-VTHEYPRVAYFRGAVDRRHRYFGP 173 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + S AV++ I LQ+ F LR+C D+VF +RTRPCLL+QI+RCSGPC IS+E Y V Sbjct: 174 YPSAWAVKEGIQLLQKVFRLRTCEDTVFANRTRPCLLYQIRRCSGPCVQAISAEAYAADV 233 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 A +FL G + + + M A +E A RD+L ALS + + Sbjct: 234 RNAVRFLDGQAQEVLDGLQTQMMVAAEALAFEKAAEIRDQLGALSKVLHQQSMETGEAGD 293 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE---------------------- 279 +D ++ AC+ G++ G +F + Sbjct: 294 VDILAVKVQGGRACVNLAMVRGGRHLGDRAYFPTHVDDAVALAHEEESAEPEAGTPSTPE 353 Query: 280 ---------------STNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYG 324 +L FL Q Y CP ++ S + + ++ G Sbjct: 354 PAPAASDAAVGSSLGQAERAVLQAFLAQHYLGADCPPLLITSLPVDRDLIAALAG--NAG 411 Query: 325 YKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPK---- 380 +KV + ++R ++ A+ + + L+ E S Q + + L Sbjct: 412 HKVVAQHQPREDRRAWLDMAIKGCELALARLLAEEGSQQARTRALVEALDLAPEGMDGGL 471 Query: 381 ---RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLER 437 RIE +D SH G + VV + QYR+FN+ ++ DD A MR VL R Sbjct: 472 DSLRIECFDVSHTQGEATQASCVVFENHRMQPAQYRRFNI--AGIQGGDDYAAMRQVLTR 529 Query: 438 RFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISI 497 R+S+L + + PD+V++DGG+GQ+ A+ V ++L ++ + I+ + Sbjct: 530 RYSKLAEAAQ----------SGEGRLPDLVLIDGGRGQVGVAKEVFQQLGLDLAL-IVGV 578 Query: 498 AKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-- 554 KG R G+E+ G + L L + ++RDEAHRFAIT R RR Sbjct: 579 EKGEGRKVGLEELVFADGREKVYLGRDSAALMLVAQIRDEAHRFAITGMRARRASVRTGG 638 Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 S L++I GIGP ++ LLQ FG V+ ++++S E LAS+EGIS ++A +IY Sbjct: 639 SRLEDIAGIGPKKRARLLQRFGGVRGVAQASVEDLASVEGISPELAEQIYQALR 692 >gi|156975021|ref|YP_001445928.1| excinuclease ABC subunit C [Vibrio harveyi ATCC BAA-1116] gi|156526615|gb|ABU71701.1| hypothetical protein VIBHAR_02747 [Vibrio harveyi ATCC BAA-1116] Length = 588 Score = 493 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 200/607 (32%), Positives = 315/607 (51%), Gaps = 31/607 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M ++ V+YVGKA +L+KR+ SY + + ++S I I TVT TE EAL+LE Sbjct: 1 MYNVEAVVIYVGKAKDLKKRLSSYFRKKVDSEKTRALVSNIAKIDVTVTHTETEALILEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK+ P++N+LLRDDKS+PYI I+ HK P L HR + +G YFGP+ AV +T Sbjct: 61 NYIKQYLPKYNVLLRDDKSYPYIFIS-GHKHPRLSMHRGAKKRKGEYFGPYPDSGAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYMEFVHEAKKFLSG 193 ++ LQ+T +R C D+V+ +RTRPCL++QI RC+GPC IS E+Y E V + FL G Sbjct: 120 LHLLQKTLPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVSTIISDEEYAELVGFVRLFLQG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCF---SLYHN 250 + + E++ M A+ + +E A RD++ A+ +Q + MD Sbjct: 180 KDKQVLEQLIEKMEVASQQLRFEDAAKFRDQIQAIRRVQEQQYVSEDSMDDMDVLGFAQE 239 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP----CPENILLS 306 +ACI G+ G+ + F K ++ ++ FL Q+Y P I+L+ Sbjct: 240 NGIACIHILMIRQGKVLGSRSHFPKIPQNTSQQEVFDSFLTQYYLSHNEARTIPSRIILN 299 Query: 307 EEAEET-SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365 +E ++ + + G KV+ G + + ++ + NA + T K++ +++ Sbjct: 300 QELGGDIEPIQQALSEVAGRKVQFHTSPTGSRGRYLKLSNTNALTAITTKINHKMTINQR 359 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 K + + I R+E +D SH MG S + VV G VK +YR++N+ + Sbjct: 360 FKALREVLGMETIA-RMECFDISHTMGESTIASCVVFNSEGPVKQEYRRYNI--TGITGG 416 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD A M LERR+S+ + E+ PD++ +DGGKGQL+ A ++ + Sbjct: 417 DDYAAMGQALERRYSKQLDVEK---------------IPDIIFIDGGKGQLNRAHEIISQ 461 Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 + R +I IAKG R G+E E L P L+ IQ +RDE+H AI Sbjct: 462 YWGDWPKRPIMIGIAKGVTRKPGLETLITVDAEEFNLPSDAPALHLIQHIRDESHNHAIA 521 Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR +R K S L+ I G+GP R++ LL+ G ++ + R+S E +A + GIS +A Sbjct: 522 RHRAKRGKTRRTSALEGIEGVGPKRRQALLKYMGGLQELKRASVEEIAKVPGISHSLAEI 581 Query: 603 IYNHFHK 609 I+ + Sbjct: 582 IFQALKQ 588 >gi|210635499|ref|ZP_03298580.1| hypothetical protein COLSTE_02519 [Collinsella stercoris DSM 13279] gi|210158354|gb|EEA89325.1| hypothetical protein COLSTE_02519 [Collinsella stercoris DSM 13279] Length = 677 Score = 493 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 175/639 (27%), Positives = 307/639 (48%), Gaps = 49/639 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P PG Y D G V+YVGKA NL+ R++ Y+ + +I M+ + + + V Sbjct: 51 KVPTDPGCYLWKDAEGGVIYVGKAKNLRARLRQYVTLTDDRAKIPLMMQLVASFDYIVVG 110 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EAL+LE +I + P FN+ +DDKS+PYI IT PA+ R+ YFGP Sbjct: 111 TEHEALVLERELIAQYHPYFNVDYKDDKSYPYIAITKGDVFPAIKYTREKHRPDTRYFGP 170 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRH---------------------RTRPCLLFQ 163 + A +TI++L++ + + + + ++ + RPC + Sbjct: 171 YTDSRAARETIDTLRKVCPVCTASCAEWKRVRRLLEKRPDEADIIELICASQGRPCFDYH 230 Query: 164 IKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRD 223 + R G C G I ++Y + V ++FLSG L +++ +M A D+E A + Sbjct: 231 VGRGPGVCAGMIGRDEYAKNVKRVERFLSGQRRELVDELKSDMAAAAADLDFERAGRIKR 290 Query: 224 RLAALSHIQNHNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSES 280 RL+ + + + ++ D Y + +A G+ + TC F L + Sbjct: 291 RLSVIDGLDDRQQVVFPTSVDLDLVGFYREETIAGACVFVVREGRVQRTCEFILDKGFDV 350 Query: 281 TNAQILSYFLRQFYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRK 339 +++S F++++Y + P + ++ + + ++ + G ++ P++GEKR+ Sbjct: 351 DEVELVSGFVKRYYDETADIPAEVNVAVDIPDAEVMGEWLTAKRGRVCRLHRPQRGEKRR 410 Query: 340 IIEQALINAHRSHTQKLST----EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSA 395 ++E A NA + + + + L AL P RIE +D S + G Sbjct: 411 LLEMAQKNARHALMRYMMRTGYSDDRTNQALLQLESALALDAPPMRIECFDISTLHGAFT 470 Query: 396 VGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK 455 V MVV K+QYR+F + + +D M VL RR+ + Sbjct: 471 VASMVVFTNGKPDKSQYRRFKIRAE-LDEANDFVSMSEVLGRRY-----------APERM 518 Query: 456 QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG 515 + F S PD++++DGG+ QL+AA L++L ++ I + +AK + E F Sbjct: 519 ADERFGSRPDLLVVDGGRPQLTAAIRQLEELGLD--IPVCGLAKADE-----EVFVPWDD 571 Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQS 574 +VL LY I+++RDE+HRFAIT HR+ R KA S LDE+ G+GP RK+ +++ Sbjct: 572 TPIVLPSGSASLYLIKQVRDESHRFAITFHRELRGKAMTVSILDEVAGVGPTRKKAIMRH 631 Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 FG++K + +S E +AS++G+ +A +Y+ + Sbjct: 632 FGSMKRLREASAEEIASVKGVPADVARAVYDSLRALDAE 670 >gi|254430840|ref|ZP_05044543.1| excinuclease ABC, C subunit [Cyanobium sp. PCC 7001] gi|197625293|gb|EDY37852.1| excinuclease ABC, C subunit [Cyanobium sp. PCC 7001] Length = 667 Score = 493 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 189/636 (29%), Positives = 310/636 (48%), Gaps = 34/636 (5%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN---HTHRITHMISQINNIRFTVT 63 P PG Y M D A R+LY+GKA L+ R++SY S H+ RI M+ Q+ ++ F VT Sbjct: 21 PTEPGCYLMRDAADRILYIGKAKVLRNRVRSYFQSGRGHGHSPRIALMVRQVCDLEFIVT 80 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ--GSY 121 +E EAL LE+N+IK +P FN+LL+DDK +PY+ IT P ++ R + Sbjct: 81 DSEAEALALESNLIKHHQPHFNVLLKDDKKYPYLCITWSEAYPRIFITRQRRFRSPLDRF 140 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GP+ V + +T+ ++R F LR ++R RT CL + I RC G C +ISSE Y Sbjct: 141 YGPYVDVGLLRRTLAVVKRVFPLRQRPQPLYRDRT--CLNYDIGRCPGVCQQKISSEDYH 198 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + + G N L E + M++ + D+ESA RD+L + + Sbjct: 199 RTLRQVAMVFQGRNEELLELLRAQMDRYAERLDFESAARVRDQLQGIGTLTADQKMSTGD 258 Query: 242 ----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQI----LSYFLRQF 293 D +L ++ LA +Q G+ G + + + + + Q L + + Sbjct: 259 SSVSRDVIALASDERLASVQLFQMRAGKLVGRLGYMAEVPATAPDQQDLGPILQRVVEEH 318 Query: 294 YTD---KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR 350 Y+ P +LL + L+E ++ G KV++ VP++ +K ++IE + NA Sbjct: 319 YSQVEPVEIPPELLLQHPLPQQDLIEAWLSERRGRKVRLAVPQRQQKAEMIELVVRNASY 378 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + + + +D + LP P+RIE YD SHI G AV VV + K Sbjct: 379 ELQRAQRASEQNLLATEDLAQLLELPVPPRRIEGYDISHIQGSDAVASQVVFVDGLPAKQ 438 Query: 411 QYRKFNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFP------- 461 YRK+ + + ++ D M ++ RRF + + + + + + Sbjct: 439 HYRKYRIQSSSIRAGHSDDFMAMAEIMRRRFRRWAQAKAAGADLRELRRAAGSALHTEGL 498 Query: 462 -SWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVL 520 WPDVV++DGGKGQLSA L++L++ + + S+AK + E F + L Sbjct: 499 NDWPDVVMIDGGKGQLSAVMEALRELDLHEELVVCSLAKQRE-----EVFVPGARQPLES 553 Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVK 579 + ++RLRDEAHRFA++ HR++R + S L +I G+GP R + LL F ++ Sbjct: 554 EAEQLGVQLLRRLRDEAHRFAVSFHRQQRGERMKRSRLSDIPGLGPKRVKDLLAHFRSID 613 Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615 I +SP +A G+ +A +++++FH P Sbjct: 614 AIQLASPAQIAEAPGVGPALARQVWDYFHPAQELEP 649 >gi|295706812|ref|YP_003599887.1| excinuclease ABC, C subunit [Bacillus megaterium DSM 319] gi|294804471|gb|ADF41537.1| excinuclease ABC, C subunit [Bacillus megaterium DSM 319] Length = 588 Score = 493 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 181/613 (29%), Positives = 303/613 (49%), Gaps = 45/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY + H + +++ I + + VT + Sbjct: 12 LPDQPGCYLMKDKYGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVNDIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI+L+DDK +P+I IT K P L R +G YFGP+ Sbjct: 71 NLEALILEMNLIKKHDPKYNIMLKDDKGYPFIKIT-AEKQPRLVITRKIKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A +T L R + LR C+ RPCL + I +C PC E+ E+ + + Sbjct: 130 PNVQAANETKRLLDRIYPLRKCSTMP----DRPCLYYHIGQCLAPCVKEVKEEQNKQIIE 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 +FL+GG ++K ++ M +A+ + D+E A +RD++A + +N Sbjct: 186 NITRFLNGGYEHVKTELTEKMLKASEELDFERAKEYRDQIAHIEATMEKQKVTFNDFVNR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F ++K C+Q F G+ + F+ QFY P+ Sbjct: 246 DVFGYSYDKGWMCVQVFFIRQGKLIEREVSMF--PFYKEPEEDFLTFIGQFYAKNIKPKE 303 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 +++ + ++ + + PK+G+K++++E A NA + Sbjct: 304 VMVPATIDAELAEKLVEVE-------VQHPKRGKKKELVELACKNAKIALGEKFYLIERD 356 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E ++ ++ + RIE +DNS+I G V M+V + K +YRK+ + Sbjct: 357 EERTVGAVERLGEELGIAAP-YRIEAFDNSNIQGTDPVSAMIVFVDGKPEKKEYRKYKIK 415 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 VK DD + MR V+ RR+S+ +K PD++++DGGKG L+A Sbjct: 416 T--VKGPDDYSSMREVVRRRYSRALKEG--------------LPLPDLIVVDGGKGHLAA 459 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 Q VL+ +L + + + K K + + + L Y +QR++DE Sbjct: 460 VQDVLENELGLL--VPTAGLVKDDKHRTSN-LMIGEPPQIIPLERNSQEFYLLQRIQDEV 516 Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R K+A+ S LD+I G+G RK+ LL+ FG+VK + ++ + + + G+ Sbjct: 517 HRFAITFHRQVRSKSAFQSVLDDIPGVGEKRKKALLKYFGSVKKLKEATVDDIRN-SGVP 575 Query: 597 KKIACKIYNHFHK 609 + IA KIY K Sbjct: 576 QNIAEKIYETLQK 588 >gi|311069340|ref|YP_003974263.1| excinuclease ABC subunit C [Bacillus atrophaeus 1942] gi|310869857|gb|ADP33332.1| excinuclease ABC subunit C [Bacillus atrophaeus 1942] Length = 590 Score = 493 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 180/613 (29%), Positives = 308/613 (50%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D ++YVGKA L+ R++SY + H + ++++I + + VT + Sbjct: 12 LPDQPGCYLMKDRQQTIIYVGKAKVLKNRVRSYFTGS-HDAKTQRLVTEIEDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI+L+DDK++P+I IT + P L R+ +G YFGP+ Sbjct: 71 NLEALILEMNLIKKHDPKYNIMLKDDKTYPFIKIT-HERHPRLIVTRNVKKDKGRYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A +T L R + LR C+ + R CL + + +C PC +IS E + V Sbjct: 130 PNVQAARETKKLLDRLYPLRKCS----KLPDRVCLYYHLGQCLAPCVKDISEETNRQLVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E +FL GG + +K+++ M++A ++E A RD++A + N Sbjct: 186 EITRFLKGGYNQVKKELEGKMHEAAENLEFERAKELRDQMAHIESTMEKQKMTMNDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ ++K C+Q F G+ E+ + + P+ Sbjct: 246 DVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPMYQEADEEFLTFIGQFYSKNNHFLPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 IL+ + ++T + ++ + + PK+G K++++ A NA + + Sbjct: 306 ILVPDSVDQTMIEQLL-------ETSVHQPKKGAKKELLMLAHKNAKIALKEKFSLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E ++ + + + P RIE +DNS+I G + V M+V + K +YRK+ + Sbjct: 359 EERSIGAVQRLGEALNI-YTPHRIEAFDNSNIQGTNPVSAMIVFIDGKPNKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V DD MR V+ RR+S++++ PD++I+DGGKGQ++A Sbjct: 418 T--VTGPDDYGSMREVVRRRYSRVLREN--------------LPLPDLIIIDGGKGQINA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ VL+ +L ++ + I +AK K EA+ L Y +QR++DE Sbjct: 462 AKDVLENELGLD--VPIAGLAKDDKHRTSN-LLIGDPLEAIYLERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAI+ HR+ R K+A+ S LD+I GIG RK+ LL+ FG+VK + +S E + G+ Sbjct: 519 HRFAISFHRQIRGKSAFQSVLDDIPGIGEKRKKSLLKHFGSVKKMKEASLEDIQKA-GVP 577 Query: 597 KKIACKIYNHFHK 609 A +Y+ K Sbjct: 578 SAAAQLLYDKLKK 590 >gi|168178938|ref|ZP_02613602.1| excinuclease ABC, C subunit [Clostridium botulinum NCTC 2916] gi|226950830|ref|YP_002805921.1| excinuclease ABC subunit C [Clostridium botulinum A2 str. Kyoto] gi|254764927|sp|C1FMJ8|UVRC_CLOBJ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|182670244|gb|EDT82220.1| excinuclease ABC, C subunit [Clostridium botulinum NCTC 2916] gi|226844595|gb|ACO87261.1| excinuclease ABC, C subunit [Clostridium botulinum A2 str. Kyoto] Length = 618 Score = 493 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 188/619 (30%), Positives = 312/619 (50%), Gaps = 19/619 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 + +P+ PGVY M + G ++YVGKA L+ R++ Y + H+ ++ M+ I + Sbjct: 7 QLKNLPDKPGVYLMKNNLGEIIYVGKAKILKNRVRQYFQKSQKHSEKVKAMVKNIEEFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE N+IK+ +P++NILL+DDK +P+I +T P + R + Sbjct: 67 IITDSEIEALILECNLIKKYRPKYNILLKDDKHYPFIKVTLAEDFPRVVSTRKVTKDGSK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT--RPCLLFQIKRCSGPCTGEISSE 178 YFGP+ +V+ I +++TF +R+C ++ RPCL +QI C PC I Sbjct: 127 YFGPYVDGSSVKDIIELIKKTFPIRTCKKNIVEGAKAIRPCLNYQIGLCKAPCAQYIKKS 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 +Y E + + K LSG + ++ E NM +A ++E A + RD++ + I Sbjct: 187 EYREIIDDVIKLLSGKHLDIVENFKLNMEKAAENLEFEKAAMLRDKINIIEKIGEKQKII 246 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 ++ D SLY + C Q F G+ G F ++ ++ ++ ++S FL++FY Sbjct: 247 LNNFDNEDYISLYSDGKDTCFQVFFLRNGKIVGREHFIIEDTFDTNSSTLISNFLKEFYG 306 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351 + E+ +LLE + K I +P +GEK+ I+ NA Sbjct: 307 GTAYIPKTIYVPNIEDEALLEQWLTLKKESKSTIKIPIKGEKKNILVLVEKNAKTTLENF 366 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 + L + + +LKD L P RIE +D S+I G +VG MVV + + Sbjct: 367 KLKYLQEKALYDNVLKDLKNILRLQEEPIRIEAFDISNIQGFDSVGSMVVFEKGRAKPSD 426 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILD 470 YR+F N VK DD M+ +L RRF + + + + F +PD++++D Sbjct: 427 YRRF--KINTVKGADDYKSMKEILTRRFQHGLSEIKSIQDRKLEFSSGKFSVFPDLILMD 484 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ++ A VL N++ I + + K K + GE +++N ++ FI Sbjct: 485 GGKGQINIALEVLNTFNID--IPVCGMVKDNKHRTRG---LIYNGEEIIINKYGSVMKFI 539 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DE HRFAI+ HR R K + +S LD+I IG RK+ LL +F ++ I +++ E L Sbjct: 540 TRVQDEVHRFAISYHRSLRGKNSFHSLLDDIPNIGEKRKKDLLFNFKSIDNIKKATYEEL 599 Query: 590 ASIEGISKKIACKIYNHFH 608 SI + KK A + F Sbjct: 600 LSIPSMDKKSAECVLEFFK 618 >gi|262374006|ref|ZP_06067283.1| excinuclease ABC, C subunit [Acinetobacter junii SH205] gi|262311017|gb|EEY92104.1| excinuclease ABC, C subunit [Acinetobacter junii SH205] Length = 599 Score = 493 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 189/605 (31%), Positives = 304/605 (50%), Gaps = 30/605 (4%) Query: 10 PGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEA 69 PGVY+ML G +LYVGKA NL+ R+ SY + ++++I +I + +E EA Sbjct: 20 PGVYKMLGKDGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVARIYDIETLIVRSETEA 79 Query: 70 LLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFGPFASV 128 LLLE N+IK +P +NI+LRDDKS+ YI ++ P + R Q G +FGP+ S Sbjct: 80 LLLEQNLIKLHRPPYNIMLRDDKSYVYIFVSADKPYPRIASGRGKGKHQIGKFFGPYPSA 139 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 + T+ +LQ+ F +R C +S F R RPCL +QIKRC+ PC G IS E Y E V + Sbjct: 140 YSARDTLLTLQKLFNVRQCENSYFSQRKRPCLQYQIKRCTAPCVGLISPEDYKEDVDNSI 199 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246 +FL G L +++ M QA ++E A+ +RDRL+ L +Q D + Sbjct: 200 RFLQGDTKELNQELIGKMEQAAEALEFEKAVFYRDRLSLLREVQAQQAVFKIKGEADILA 259 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DKPCPENILL 305 + + + C+Q + G+ G ++F + + + ++ P +++ Sbjct: 260 IAYQAGVTCVQIMYVRNGRMLGGKSYFPDMLGDDLGQMLSDFIANFYFQVADEIPSELIV 319 Query: 306 SEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365 + E + LE + + + KV+I + + + E A +N + KLS + Sbjct: 320 NVELPDRVQLEEALQQTFEKKVQIKHKVRETRAEWQELAQMNVQHAIKGKLSNHLELNER 379 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 + P IE +D SH MG + + VV + G K YR+F + + Sbjct: 380 FHQLEQVAGRPIDR--IECFDISHTMGEAPIASCVVFDQGGARKRDYRQFAIQD--ITGG 435 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD A MR L RR+ + + PD++++DGGKGQL A V+++ Sbjct: 436 DDYAAMRQALIRRYKKNM-------------------LPDLLLIDGGKGQLHMAMDVMQE 476 Query: 486 LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545 L ++ +I ++KG R G+E G + L L+ IQ++RDEAHRFAIT H Sbjct: 477 LGLDAF--MIGVSKGEGRKPGLETLHFTDGTKIQLPEDHKALHLIQQVRDEAHRFAITKH 534 Query: 546 RKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 R +R K+ + S L+ I G+GP R+R LL FG ++ + ++S + L + G+ + +A IY Sbjct: 535 RAKRDKRRSSSVLEAIPGLGPKRRRDLLTHFGGIQGVLKASEKELMLVPGLGEVMARTIY 594 Query: 605 NHFHK 609 H+ Sbjct: 595 KILHE 599 >gi|219856488|ref|YP_002473610.1| hypothetical protein CKR_3145 [Clostridium kluyveri NBRC 12016] gi|219570212|dbj|BAH08196.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 625 Score = 493 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 194/619 (31%), Positives = 322/619 (52%), Gaps = 19/619 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 + +P+ PGVY M + G V+YVGKA L+ R++ Y + NH+ ++ M+ I+ + Sbjct: 10 QLKILPDKPGVYLMKNSLGEVIYVGKAKILKNRVRQYFQKSKNHSEKVRTMVKHISEFEY 69 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK+ +PR+NILL+DDK +P I IT P + R+ Sbjct: 70 IVTDSEMEALVLECNLIKKYRPRYNILLKDDKIYPLIKITLNEDFPRIICARNKIKDGAK 129 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV +T+ +++ F +R C ++ + + RPCL + I C PCTG IS E Sbjct: 130 YFGPYISTGAVYETMEVIKKIFPIRDCKLNIKKGNVKVRPCLNYHIGLCKAPCTGHISKE 189 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + + FLSG N ++ K+ +M+ + ++E A RD++ AL I Sbjct: 190 EYGKIISGVMDFLSGKNKDIIRKLKEDMDTLSENMEFEKAAELRDKIFALEKIIEKQKIT 249 Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D +++ ++ +CIQ F G+ G F ++ + +I++ F+++FY Sbjct: 250 TGGFEDEDFINIHSDEKDSCIQVFFSRTGKIIGREHFIIEDTQDLPKGEIVANFIKEFYG 309 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351 + E + LLE + KV I +P++G+K+ I+ NA Sbjct: 310 GTAYIAKTIYVPEIYDVQLLEDWLSIKKDSKVYIKIPQKGDKKAILNLVEKNARTTLQNF 369 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 + + + ++ L++ + L IP RIE YD S+I G +VG MVV N Sbjct: 370 KLKFIQDKKMYETSLEELMEILNLDDIPHRIEAYDVSNIQGVDSVGTMVVFENGRPKHND 429 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP-KKQEYSFPSWPDVVILD 470 YR+F N+VK +D M+ +L RRF ++ + + + F +PD++++D Sbjct: 430 YRRF--KINEVKGANDYESMKEILRRRFQNGMEEIKRIKERKLEFSAGKFSFFPDLILMD 487 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGK Q+SAA VLK+ N++ IT+ + K K + + E + LN I+ I Sbjct: 488 GGKIQVSAALEVLKEFNID--ITVCGMVKDDKHRTRG---LIYRNEEMPLNRNSNIIKLI 542 Query: 531 QRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DE HRFA+T HR R K +S L++I +G R++ LL+ F +V+ I ++S E L Sbjct: 543 TRIQDEVHRFAVTYHRSLRSKRVLHSVLEDIPNVGVKRRKELLKRFLSVENIKKASMEEL 602 Query: 590 ASIEGISKKIACKIYNHFH 608 S I + A I ++F Sbjct: 603 ISTPSIDMRTAESIISYFR 621 >gi|258593702|emb|CBE70043.1| UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C) [NC10 bacterium 'Dutch sediment'] Length = 601 Score = 493 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 193/611 (31%), Positives = 307/611 (50%), Gaps = 34/611 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHR---ITHMISQINNI 58 + + + PGVY D G VLY+GKA +L+KR+ SY T I M+ QI ++ Sbjct: 11 KVKGLADAPGVYLFRDARGHVLYIGKALSLRKRVGSYFTEAPDTPERPLIRPMVEQIADL 70 Query: 59 RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118 F +T E+EAL+LE+N+IK KPR+NI L+DDK +P++ + P + R Sbjct: 71 EFILTDNELEALILESNLIKSHKPRYNIALKDDKHYPFLKLDLNDPFPWVQVVRRIKDDG 130 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 Y+GP+ A+ + + +T LR C R CL + + RC GPC G IS + Sbjct: 131 ALYYGPYVPTTAMWDVLALVNKTIPLRKCRSI---KGRRLCLEYHLGRCLGPCEGLISQQ 187 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y E V +A+ L G + L +++ M QA +YE A HRD++A+L + I Sbjct: 188 AYGELVDQARLLLDGKDQELMKRLEAQMQQAAETLEYERAAKHRDQIASLRQVFERQRII 247 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D F L A +Q G+ G TF + +E+ + + + + + Sbjct: 248 SPRGEDQDVFGLAAEGGEAQVQLFLIRRGRLIGRETFTFELKTETMSELLSAVLKQFYLG 307 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILLSE E+ L+ + +V + VP++G K ++I+ AL NA + Sbjct: 308 ARDIPREILLSEPLEDAPLIAAWLTSRANRRVNLLVPRRGRKMRLIQMALRNAQEALALS 367 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L + S + LK+ LP P+RIE YD S++ G AVG VV + K+ YR++ Sbjct: 368 LRSSQSREAALKELQTVLDLPAPPRRIEAYDISNLSGALAVGSQVVWEDGKPKKSAYRRY 427 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 + V+ DD AM+ V++RR + + PD+++LDGG+GQ Sbjct: 428 KIKT--VEGPDDFAMLAEVVQRRLRKAEE----------------MPLPDLMLLDGGRGQ 469 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 L+AA GV ++L + + ++S+AK + F + + L R +Q++RD Sbjct: 470 LNAALGVARELGLH-ALPMVSLAKEEEL-----VFHPSRSTPIALPERSRARQLLQQIRD 523 Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E+HRFAIT HR R K+ S LD++ GIG R+R LL G+++ + +S + L G Sbjct: 524 ESHRFAITYHRALRGKSAIRSLLDDVPGIGAKRRRALLTQLGSLRRLREASIDELRRAGG 583 Query: 595 ISKKIACKIYN 605 IS+ +A I++ Sbjct: 584 ISESLATTIHD 594 >gi|170756327|ref|YP_001783017.1| excinuclease ABC subunit C [Clostridium botulinum B1 str. Okra] gi|229558019|sp|B1IFW6|UVRC_CLOBK RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|169121539|gb|ACA45375.1| excinuclease ABC, C subunit [Clostridium botulinum B1 str. Okra] Length = 618 Score = 493 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 188/619 (30%), Positives = 312/619 (50%), Gaps = 19/619 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 + +P+ PGVY M + G ++YVGKA L+ R++ Y + H+ ++ M+ I + Sbjct: 7 QLKNLPDKPGVYLMKNNLGEIIYVGKAKILKNRVRQYFQKSQKHSEKVKAMVKNIEEFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE N+IK+ +P++NILL+DDK +P+I +T P + R + Sbjct: 67 IITDSEIEALILECNLIKKYRPKYNILLKDDKHYPFIKVTLAEDFPRVVSTRKVTKDGSK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT--RPCLLFQIKRCSGPCTGEISSE 178 YFGP+ +V+ I +++TF +R+C ++ RPCL +QI C PC I Sbjct: 127 YFGPYVDGSSVKDIIELIKKTFPIRTCKKNIVEGAKAIRPCLNYQIGLCKAPCAQYIKKS 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 +Y E + + K LSG + ++ E NM +A ++E A + RD++ + I Sbjct: 187 EYREIIDDVIKLLSGKHLDIVENFKLNMEKAAENLEFEKAAMLRDKINIIEKIGEKQKII 246 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 ++ D SLY + C Q F G+ G F ++ ++ ++ ++S FL++FY Sbjct: 247 LNNFDNEDYISLYSDGKDTCFQVFFLRNGKIVGREHFIIEDTFDTNSSTLISNFLKEFYG 306 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351 + E+ +LLE + K I +P +GEK+ I+ NA Sbjct: 307 GTAYIPKTIYVPSIEDEALLEQWLTLKKESKSTIKIPIKGEKKNILVLVEKNAKTTLENF 366 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 + L + + +LKD L P RIE +D S+I G +VG MVV + + Sbjct: 367 KLKYLQEKALYDNVLKDLKNILRLQEEPIRIEAFDISNIQGFDSVGSMVVFEKGRAKPSD 426 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILD 470 YR+F N VK DD M+ +L RRF + + + + F +PD++++D Sbjct: 427 YRRF--KINTVKGADDYKSMKEILTRRFQHGLSEIKSIQDRKLEFSSGKFSVFPDLILMD 484 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ++ A VL N++ I + + K K + GE +++N ++ FI Sbjct: 485 GGKGQINIALEVLNTFNID--IPVCGMVKDNKHRTRG---LIYNGEEIIINKYGSVMKFI 539 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DE HRFAI+ HR R K + +S LD+I IG RK+ LL +F ++ I +++ E L Sbjct: 540 TRVQDEVHRFAISYHRSLRGKNSFHSLLDDIPNIGEKRKKDLLFNFKSIDNIKKATYEEL 599 Query: 590 ASIEGISKKIACKIYNHFH 608 SI + KK A + F Sbjct: 600 LSIPSMDKKSAECVLEFFK 618 >gi|153938122|ref|YP_001392736.1| excinuclease ABC subunit C [Clostridium botulinum F str. Langeland] gi|189038038|sp|A7GIX6|UVRC_CLOBL RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|152934018|gb|ABS39516.1| excinuclease ABC, C subunit [Clostridium botulinum F str. Langeland] gi|295320717|gb|ADG01095.1| excinuclease ABC, C subunit [Clostridium botulinum F str. 230613] Length = 618 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 188/619 (30%), Positives = 312/619 (50%), Gaps = 19/619 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 + +P+ PGVY M + G ++YVGKA L+ R++ Y + H+ ++ M+ I + Sbjct: 7 QLKNLPDKPGVYLMKNNLGEIIYVGKAKILKNRVRQYFQKSQKHSEKVKAMVKNIEEFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE N+IK+ +P++NILL+DDK +P+I +T P + R + Sbjct: 67 IITDSEIEALILECNLIKKYRPKYNILLKDDKHYPFIKVTLAEDFPRVVSTRKVTKDGSK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT--RPCLLFQIKRCSGPCTGEISSE 178 YFGP+ +V+ I +++TF +R+C ++ RPCL +QI C PC I Sbjct: 127 YFGPYVDGSSVKDIIELIKKTFPIRTCKKNIVEGAKAIRPCLNYQIGLCKAPCAQYIKKS 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 +Y E + + K LSG + ++ E NM +A ++E A + RD++ + I Sbjct: 187 EYREIIDDVIKLLSGKHLDIVENFKLNMERAAENLEFEKAAMLRDKINIIEKIGEKQKII 246 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 ++ D SLY + C Q F G+ G F ++ ++ ++ ++S FL++FY Sbjct: 247 LNNFDNEDYISLYSDGKDTCFQVFFLRNGKIVGREHFIIEDTFDTNSSTLISNFLKEFYG 306 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351 + E+ +LLE + K I +P +GEK+ I+ NA Sbjct: 307 GTAYIPKTIYVPNIEDEALLEQWLTLKKESKSTIKIPIKGEKKNILVLVEKNAKTTLENF 366 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 + L + + +LKD L P RIE +D S+I G +VG MVV + + Sbjct: 367 KLKYLQEKALYDNVLKDLKNILRLQEEPIRIEAFDISNIQGFDSVGSMVVFEKGRAKPSD 426 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILD 470 YR+F N VK DD M+ +L RRF + + + + F +PD++++D Sbjct: 427 YRRF--KINTVKGADDYKSMKEILTRRFQHGLSEIKSIQDRKLEFSSGKFSVFPDLILMD 484 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ++ A VL N++ I + + K K + GE +++N ++ FI Sbjct: 485 GGKGQINIALEVLNTFNID--IPVCGMVKDNKHRTRG---LIYNGEEIIINKYGSVMKFI 539 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DE HRFAI+ HR R K + +S LD+I IG RK+ LL +F ++ I +++ E L Sbjct: 540 TRVQDEVHRFAISYHRSLRGKNSFHSLLDDIPNIGEKRKKDLLFNFKSIDNIKKATYEEL 599 Query: 590 ASIEGISKKIACKIYNHFH 608 SI + KK A + F Sbjct: 600 LSIPSMDKKSAECVLEFFK 618 >gi|319938789|ref|ZP_08013153.1| UvrABC system protein C [Streptococcus anginosus 1_2_62CV] gi|319811839|gb|EFW08105.1| UvrABC system protein C [Streptococcus anginosus 1_2_62CV] Length = 599 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 173/624 (27%), Positives = 296/624 (47%), Gaps = 43/624 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK +P++NI+L+DDKS+P+I IT+ K P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENQPKYNIMLKDDKSYPFIKITN-EKYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + + C + I +C + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----EKVCFYYHIGQCRAHTICHNEQHFFQ 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G ++ + +++ M A K ++E A +RD L +++ ++ + Sbjct: 182 NMAQEVADFLKGHDNKIIDELKGKMTSAAEKMEFEKAAEYRDLLQSIATLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNMFPYYNDPDEDFLTYIGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQ 354 P IL+ + +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 IPNEILIPSDIDEIAVQAVVDTKILK-------PQRGEKKQLVNLAIKNAQVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V DD A MR V++RR+S+++++ PD++++DGG+G Sbjct: 414 YKIKT--VVGPDDYASMREVIKRRYSRVMRDG--------------LIPPDLIVIDGGQG 457 Query: 475 QLSAAQG-VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 Q++ A+ + +L ++ I I + K K E F + + L+ + +QR+ Sbjct: 458 QVNIARDVIQNQLGLD--IPIAGLQKNDKHQT-HELLFGDPLKVVELSHNSQEFFLLQRI 514 Query: 534 RDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 +DE HRFAIT HR+ R K ++S LD I G+G RK+ L++ F ++ I ++S + + + Sbjct: 515 QDEVHRFAITFHRQLRSKNSFSSQLDGIEGLGLKRKQNLMRHFKSLTNIKKASVDEIVEV 574 Query: 593 EGISKKIACKIYNHFHKNTSHTPT 616 G+ +K+A + K+T T Sbjct: 575 -GVPRKVAEAVQEKLSKSTDKKIT 597 >gi|227872305|ref|ZP_03990662.1| excision endonuclease subunit UvrC [Oribacterium sinus F0268] gi|227841849|gb|EEJ52122.1| excision endonuclease subunit UvrC [Oribacterium sinus F0268] Length = 637 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 202/621 (32%), Positives = 321/621 (51%), Gaps = 20/621 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M V+YVGKA L+ R+K Y + + +I M++QI + Sbjct: 15 ELKKLPAMPGVYLMHGDMDEVIYVGKAKILKNRVKQYFQKSTKKSVKIQQMVAQIRRFEY 74 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V +E+EAL+LE+N+IK KPR+N LL+DDK++PYI ++ + P L+ R+ Sbjct: 75 IVVDSEIEALVLESNLIKEYKPRYNTLLKDDKAYPYIRLSVEEPYPRLFASRNKKIKSSK 134 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178 Y+GP+AS++ V + I L++T +R+C RPC+ + + +C GPC + + E Sbjct: 135 YYGPYASMERVNEVIELLRKTMHIRNCNKVFSEDNPLARPCIYYDMGQCLGPCVLKQTKE 194 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + + +FLSG +++ M +A+ + D+E A+ RD + A+ +QN Sbjct: 195 EYRASIPKLTEFLSGKTEATLKELEEKMLEASERLDFEKAMEFRDLIQAIQSLQNKQKIT 254 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D L + + +Q F G+ G FL+ D E ++ +IL+ FL+QFY Sbjct: 255 ALDGEDRDIIGLRRDHSDCIVQIFFVRDGKIIGRDHQFLRIDEEQSDGEILASFLQQFYN 314 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH-- 352 P P+ I L E + +LE G KV I VPKQG+K K++E A NA Sbjct: 315 GTPFIPKEIHLPVELPDQKILEEWLSYVKGKKVYILVPKQGDKEKLVELAGKNAGILMLR 374 Query: 353 --TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E + L++ LP IPKRIE YD S+ G VG MVV E N Sbjct: 375 YVEKYRMEEKKRKEALEELKNACGLPEIPKRIESYDISNTSGALTVGSMVVYQEGKEKPN 434 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVIL 469 +YRKF + + QDD M+ +L RRFS +K EEN + + F +PD++++ Sbjct: 435 EYRKFRI--QSIVGQDDYGAMKEMLSRRFSHGLKEQEENKAGGKEDRLGRFSQFPDLILM 492 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ+ + VL+ L + I + + K + + L+ R Sbjct: 493 DGGKGQVGICESVLESLGIT--IPVCGMIKDEHHRTRA---LLVGNQEYPLSERSECFKL 547 Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 + R++DE HRFAIT HR R K +S L++I GIGP+R++ L++ F ++ ++ + E Sbjct: 548 LTRIQDEVHRFAITYHRSLRGKEQIHSLLEDIPGIGPVRRKALMRKFRDLEGVANADFEE 607 Query: 589 LASIEGISKKIACKIYNHFHK 609 L S G+ +K A + + F Sbjct: 608 LLSCPGMDEKSAQSVLHFFKN 628 >gi|322807703|emb|CBZ05278.1| excinuclease ABC subunit C [Clostridium botulinum H04402 065] Length = 618 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 188/619 (30%), Positives = 312/619 (50%), Gaps = 19/619 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 + +P+ PGVY M + G ++YVGKA L+ R++ Y + H+ ++ M+ I + Sbjct: 7 QLKNLPDKPGVYLMKNNLGEIIYVGKAKILKNRVRQYFQKSQKHSEKVKAMVKNIEEFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE N+IK+ +P++NILL+DDK +P+I +T P + R + Sbjct: 67 IITDSEIEALILECNLIKKYRPKYNILLKDDKHYPFIKVTLAEDFPRVVSTRKVTKDGSK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT--RPCLLFQIKRCSGPCTGEISSE 178 YFGP+ +V+ I +++TF +R+C ++ RPCL +QI C PC I Sbjct: 127 YFGPYVDGSSVKDIIELIKKTFPIRTCKKNIVEGAKAIRPCLNYQIGLCKAPCAQYIKKS 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 +Y E + + K LSG + ++ E NM +A ++E A + RD++ + I Sbjct: 187 EYREIIDDVIKLLSGKHLDIVENFKLNMEKAAENLEFEKAAMLRDKINIIEKIGEKQKII 246 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 ++ D SLY + C Q F G+ G F ++ ++ ++ ++S FL++FY Sbjct: 247 LNNFDNEDYISLYSDGKDTCFQVFFLRNGKIIGREHFIIEDTFDTNSSTLISNFLKEFYG 306 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351 + E+ +LLE + K I +P +GEK+ I+ NA Sbjct: 307 GTAYIPKTIYVPNIEDEALLEQWLTLKKESKSTIKIPIKGEKKNILVLVEKNAKTTLENF 366 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 + L + + +LKD L P RIE +D S+I G +VG MVV + + Sbjct: 367 KLKYLQEKALYDNVLKDLKNILRLQEEPIRIEAFDISNIQGFDSVGSMVVFEKGRAKPSD 426 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILD 470 YR+F N VK DD M+ +L RRF + + + + F +PD++++D Sbjct: 427 YRRF--KINTVKGADDYKSMKEILTRRFQHGLSEIKSIQDRKLEFSSGKFSVFPDLILMD 484 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ++ A VL N++ I + + K K + GE +++N ++ FI Sbjct: 485 GGKGQINIALEVLNTFNID--IPVCGMVKDNKHRTRG---LIYNGEEIIINKYGSVMKFI 539 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DE HRFAI+ HR R K + +S LD+I IG RK+ LL +F ++ I +++ E L Sbjct: 540 TRVQDEVHRFAISYHRSLRGKNSFHSLLDDIPNIGEKRKKDLLFNFKSIDNIKKATYEEL 599 Query: 590 ASIEGISKKIACKIYNHFH 608 SI + KK A + F Sbjct: 600 LSIPSMDKKSAECVLEFFK 618 >gi|308174545|ref|YP_003921250.1| excinuclease ABC subunit C [Bacillus amyloliquefaciens DSM 7] gi|307607409|emb|CBI43780.1| excinuclease ABC (subunit C) [Bacillus amyloliquefaciens DSM 7] gi|328912871|gb|AEB64467.1| excinuclease ABC (subunit C) [Bacillus amyloliquefaciens LL3] Length = 590 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 178/613 (29%), Positives = 305/613 (49%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D V+YVGKA L+ R++SY + H + ++++I + + VT + Sbjct: 12 LPDQPGCYLMKDRQKTVIYVGKAKVLKNRVRSYFTGS-HDAKTQRLVTEIEDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++N++L+DDK++P+I IT + P L R+ +G YFGP+ Sbjct: 71 NLEALILEMNLIKKYDPKYNVMLKDDKTYPFIKIT-HERHPRLIVTRNVKKDKGRYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A +T L R + LR C+ + R CL + + +C PC +IS E E V Sbjct: 130 PNVQAARETKKLLDRLYPLRKCS----KLPDRVCLYYHLGQCLAPCVKDISEETNRELVE 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 + +FL GG++ +K+++ M +A K ++E A RD+LA + N Sbjct: 186 DITRFLKGGHNEVKKELEEKMTEAAEKLEFERAKEFRDQLAHIESTMEKQKMTMNDLLDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ ++K C+Q F G+ E+ + + P+ Sbjct: 246 DVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPMYQEADEEFLTYIGQFYSKNNHFLPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 IL+ + + + E+ + + PK+G K++++ A NA + + Sbjct: 306 ILVPDSVDRDMISELL-------ETAVHQPKKGPKKELLLLAHKNAKIALREKFSLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E + + + + P RIE +DNS+I G + V M+V + K +YRK+ + Sbjct: 359 EERSIGAAERLGEALNI-YTPHRIEAFDNSNIQGTNPVSAMIVFIDGKPNKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V DD MR V+ RR+S++++ PD++I+DGGKGQ++A Sbjct: 418 T--VTGPDDYGSMREVVRRRYSRVLREN--------------LPLPDLIIIDGGKGQINA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ VL+ +L ++ + + +AK K E + L Y +QR++DE Sbjct: 462 ARDVLENELGLD--VPVAGLAKDDKHRTSN-LLIGDPLEPMFLERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAI+ HR+ R K+A+ S LD+I GIG RK++LL+ FG+VK + +S + + G+ Sbjct: 519 HRFAISFHRQIRGKSAFQSVLDDIPGIGEKRKKMLLKHFGSVKKMKEASLDDIKKA-GVP 577 Query: 597 KKIACKIYNHFHK 609 A ++ K Sbjct: 578 AAAAQMLFEKLKK 590 >gi|294496413|ref|YP_003542906.1| excinuclease ABC, C subunit [Methanohalophilus mahii DSM 5219] gi|292667412|gb|ADE37261.1| excinuclease ABC, C subunit [Methanohalophilus mahii DSM 5219] Length = 604 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 199/615 (32%), Positives = 337/615 (54%), Gaps = 30/615 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 P PGVY M D ++Y+GKA +L+KR+ Y ++ N + + ++S+I +I + Sbjct: 11 DISDFPHLPGVYLMKDENETIIYIGKARDLKKRVSQYFQADKNKSPKTKVLVSKIRDIEY 70 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT TEVEAL+LEAN+IK+ +PR+NI L+DDK +PY+ +T + P +Y R Sbjct: 71 IVTSTEVEALILEANLIKKNRPRYNISLKDDKRYPYVKVTINSRYPRIYLVRRRMMDDAV 130 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGP+ SV V T++ + + F +R C + + + RPCL + I RC GPCTG++ +E+Y Sbjct: 131 YFGPYTSVKPVRTTLDLISQIFKIRRCHGNPAQKK-RPCLNYHINRCMGPCTGDVDAEEY 189 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH--IQNHNDSI 238 + V A K+L G +L K+ + M + K+ YE+A + RD++ L Q + Sbjct: 190 RDNVKAAVKYLRGDTGDLLGKLKQQMQEYAEKQRYEAASVIRDQIGGLKELAKQQKTTAG 249 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 + D L+ ++ +Q + G G F L ST+++I++ F++Q+Y D P Sbjct: 250 IDDRDVIGLHVDEKDIYVQLFYVRNGNMVGRADFELNRGK-STSSEIIAEFIKQYYQDSP 308 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P I++ E E ++ ++ G KV + +P+ GEK+K+++ A+ NA + + + Sbjct: 309 VPPEIVVPEMPPEEEVILKWLSEKAGRKVTLNIPRIGEKKKLLDMAMKNATMAKERANTE 368 Query: 359 EISHQ---MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 + + L+ +K + +P+ IE +D S+I G V MVV K YR + Sbjct: 369 KAKMEGTLQGLETLQEKLGIGTLPRHIEGFDISNISGSDPVASMVVFKNGTPSKADYRHY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ V+ DD AMM +ERR+S + +++ + PD++++DGG+GQ Sbjct: 429 NIKS--VEGIDDFAMMAEAVERRYSHIKDDKQAM--------------PDLILIDGGEGQ 472 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 ++AA L+KL + I II +AK + + + L+L + P L + ++RD Sbjct: 473 VNAASRELQKLQI--NIPIIGLAKKFEHIIFPDT---HPRKLLILPKKSPALKMLMQVRD 527 Query: 536 EAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFA+ +HRKRR + ++S LD I GIG +K+ LLQ FG+V+ + ++ + +A + G Sbjct: 528 EAHRFAVASHRKRRSARLSHSELDGIEGIGEKKKKELLQHFGSVEKVRQAEEKEIAEVGG 587 Query: 595 ISKKIACKIYNHFHK 609 I K +A +I + Sbjct: 588 IGKALAMRIAEKLRE 602 >gi|153956163|ref|YP_001396928.1| excinuclease ABC subunit C [Clostridium kluyveri DSM 555] gi|189038039|sp|A5N361|UVRC_CLOK5 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|146349021|gb|EDK35557.1| UvrC [Clostridium kluyveri DSM 555] Length = 622 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 194/619 (31%), Positives = 322/619 (52%), Gaps = 19/619 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 + +P+ PGVY M + G V+YVGKA L+ R++ Y + NH+ ++ M+ I+ + Sbjct: 7 QLKILPDKPGVYLMKNSLGEVIYVGKAKILKNRVRQYFQKSKNHSEKVRTMVKHISEFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK+ +PR+NILL+DDK +P I IT P + R+ Sbjct: 67 IVTDSEMEALVLECNLIKKYRPRYNILLKDDKIYPLIKITLNEDFPRIICARNKIKDGAK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV +T+ +++ F +R C ++ + + RPCL + I C PCTG IS E Sbjct: 127 YFGPYISTGAVYETMEVIKKIFPIRDCKLNIKKGNVKVRPCLNYHIGLCKAPCTGHISKE 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + + FLSG N ++ K+ +M+ + ++E A RD++ AL I Sbjct: 187 EYGKIISGVMDFLSGKNKDIIRKLKEDMDTLSENMEFEKAAELRDKIFALEKIIEKQKIT 246 Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D +++ ++ +CIQ F G+ G F ++ + +I++ F+++FY Sbjct: 247 TGGFEDEDFINIHSDEKDSCIQVFFSRTGKIIGREHFIIEDTQDLPKGEIVANFIKEFYG 306 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351 + E + LLE + KV I +P++G+K+ I+ NA Sbjct: 307 GTAYIAKTIYVPEIYDVQLLEDWLSIKKDSKVYIKIPQKGDKKAILNLVEKNARTTLQNF 366 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 + + + ++ L++ + L IP RIE YD S+I G +VG MVV N Sbjct: 367 KLKFIQDKKMYETSLEELMEILNLDDIPHRIEAYDVSNIQGVDSVGTMVVFENGRPKHND 426 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP-KKQEYSFPSWPDVVILD 470 YR+F N+VK +D M+ +L RRF ++ + + + F +PD++++D Sbjct: 427 YRRF--KINEVKGANDYESMKEILRRRFQNGMEEIKRIKERKLEFSAGKFSFFPDLILMD 484 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGK Q+SAA VLK+ N++ IT+ + K K + + E + LN I+ I Sbjct: 485 GGKIQVSAALEVLKEFNID--ITVCGMVKDDKHRTRG---LIYRNEEMPLNRNSNIIKLI 539 Query: 531 QRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DE HRFA+T HR R K +S L++I +G R++ LL+ F +V+ I ++S E L Sbjct: 540 TRIQDEVHRFAVTYHRSLRSKRVLHSVLEDIPNVGVKRRKELLKRFLSVENIKKASMEEL 599 Query: 590 ASIEGISKKIACKIYNHFH 608 S I + A I ++F Sbjct: 600 ISTPSIDMRTAESIISYFR 618 >gi|163803039|ref|ZP_02196925.1| excinuclease ABC subunit C [Vibrio sp. AND4] gi|159173213|gb|EDP58042.1| excinuclease ABC subunit C [Vibrio sp. AND4] Length = 588 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 199/607 (32%), Positives = 318/607 (52%), Gaps = 31/607 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M ++ V+YVGKA +L+KR+ SY + + + ++S I I TVT TE EAL+LE Sbjct: 1 MYNVEAVVIYVGKAKDLKKRLSSYFRTKVDSEKTRALVSNIAKIDVTVTHTETEALILEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK+ P++N+LLRDDKS+PYI I+ HK P L HR S +G YFGP+ AV +T Sbjct: 61 NYIKQYLPKYNVLLRDDKSYPYIFIS-GHKHPRLSMHRGSKKRKGEYFGPYPDSGAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYMEFVHEAKKFLSG 193 ++ LQ+ +R C D+V+ +RTRPCL++QI RC+GPC IS E+Y + V + FL G Sbjct: 120 LHLLQKILPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVSTIISDEEYADLVGFVRLFLQG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCF---SLYHN 250 ++ + E++ M A+ + +E A RD++ A+ +Q + MD Sbjct: 180 KDNQVLEQLIEKMEVASQRLHFEDAAKFRDQIQAIRRVQEQQYVSEDSMDDMDVLGFAQE 239 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP----CPENILLS 306 +ACI G+ G+ + F K ++ ++ FL Q+Y P I+L+ Sbjct: 240 NGIACIHILMIRQGKVLGSRSHFPKIPHNTSQQEVFDSFLTQYYLSHNEARTIPTRIILN 299 Query: 307 EEAEET-SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365 +E ++ + + G KV+ G + + ++ + NA + T K++ +++ Sbjct: 300 QELGGDIEPIQQALSEVAGRKVQFHTSPAGVRGRYLKLSNTNALTAITTKINHKMTINQR 359 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 K + A+ I R+E +D SH MG S + VV G VK +YR++N+ + Sbjct: 360 FKALREVLAMETIS-RMECFDISHTMGESTIASCVVFNSEGPVKQEYRRYNI--TGITGG 416 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD A M LERR+S+ + E+ P+++ +DGGKGQL+ A ++ + Sbjct: 417 DDYAAMGQALERRYSKQLDVEK---------------IPEIIFIDGGKGQLNRAHEIICQ 461 Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 + R T+I IAKG R G+E G+ L P L+ IQ +RDE+H AI Sbjct: 462 YWGDWPKRPTMIGIAKGVTRKPGLETLITVDGDEFNLPSDAPALHLIQHIRDESHNHAIA 521 Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR +R K S L+ I G+GP R++ LL+ G ++ + R+S E + + GIS +A Sbjct: 522 GHRAKRGKTRRTSALEGIEGVGPKRRQALLKYMGGLQELKRASVEEITKVPGISHSLAEI 581 Query: 603 IYNHFHK 609 I+ + Sbjct: 582 IFQALKQ 588 >gi|86148830|ref|ZP_01067095.1| excinuclease ABC subunit C [Vibrio sp. MED222] gi|85833381|gb|EAQ51574.1| excinuclease ABC subunit C [Vibrio sp. MED222] Length = 588 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 197/607 (32%), Positives = 321/607 (52%), Gaps = 31/607 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M + V+YVGKA NL+KR+ SY + + ++S I+ I TVT TE EAL+LE Sbjct: 1 MYNAEAVVIYVGKAKNLKKRLSSYFRKKVDSEKTRALVSNIDKIDVTVTHTETEALILEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK+ P++N+LLRDDKS+PYI I+ HK P L HR + +G YFGP+ AV +T Sbjct: 61 NYIKQYLPKYNVLLRDDKSYPYIFIS-GHKHPRLSMHRGAKKKKGEYFGPYPDSGAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYMEFVHEAKKFLSG 193 ++ LQ+ F R C D+V+ +RTRPCL++QI RC+ PC IS E+Y E + + FL G Sbjct: 120 LHLLQKIFPARQCEDTVYANRTRPCLMYQIGRCAAPCVSSIISDEEYSELIDYVRLFLQG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHN 250 + + E + M+ A+ + +E A RD++ A+ +Q + MD Sbjct: 180 KDKLVLETLIEKMDTASRELRFEQAAAFRDQIQAIRRVQEQQYVSDDSMEDMDVLGFAQE 239 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLS 306 +ACI G+ G+ + F K + + ++ S FL Q+Y + P ++L+ Sbjct: 240 NGVACIHILMIRQGKVLGSRSHFPKIPNNTVREEVFSSFLSQYYLAHNEARTIPTRLILN 299 Query: 307 EEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365 + E+ + ++ + + G K+ G + + ++ + NA + T K++ +++ Sbjct: 300 ADLMEDITPIQEALCEVAGRKIHFNTNPSGTRGRYLKLSNTNALTAITTKINHKMTINQR 359 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 K+ + ++ I R+E +D SH MG S + VV + G VK +YR++N+ + Sbjct: 360 FKELQEVLSMDVIK-RMECFDISHTMGESTIASCVVFNQEGPVKPEYRRYNI--TGITGG 416 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD A M LERR+S+ + ++ PD++ +DGGKGQL+ A ++ + Sbjct: 417 DDYAAMAQALERRYSKQLDVDK---------------IPDIIFIDGGKGQLNRAHEIISQ 461 Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 + R ++ IAKG R G+E +GE L P L+ IQ +RDE+H AI Sbjct: 462 YWGDWPFRPRMMGIAKGVTRKPGLETLVTLEGEEFNLPSDAPALHLIQHIRDESHNHAIA 521 Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR +R K S L+ I G+GP R++ LL+ G ++ + R++ E +A + GIS +A Sbjct: 522 GHRAKRGKTRRTSALEGIEGVGPKRRQSLLKYMGGLQELKRATVEEIAKVPGISHSLAEN 581 Query: 603 IYNHFHK 609 IY + Sbjct: 582 IYQALKQ 588 >gi|126640394|ref|YP_001083378.1| excinuclease ABC subunit C [Acinetobacter baumannii ATCC 17978] gi|213155755|ref|YP_002317800.1| excinuclease ABC, C subunit (EsvL) [Acinetobacter baumannii AB0057] gi|215484868|ref|YP_002327107.1| excinuclease ABC, C subunit [Acinetobacter baumannii AB307-0294] gi|213054915|gb|ACJ39817.1| excinuclease ABC, C subunit (EsvL) [Acinetobacter baumannii AB0057] gi|213986629|gb|ACJ56928.1| excinuclease ABC, C subunit [Acinetobacter baumannii AB307-0294] Length = 575 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 193/601 (32%), Positives = 305/601 (50%), Gaps = 32/601 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 ML G +LYVGKA NL+ R+ SY + ++++I +I VT +E EALLLE Sbjct: 1 MLGKEGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVARIYDIETLVTRSETEALLLEQ 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFGPFASVDAVEK 133 N+IK+ +P +NI+LRDDKS+ YI ++ P + R Q G +FGP+ S + Sbjct: 61 NLIKQHRPPYNIMLRDDKSYVYIFVSADKPYPRIASGRGKGKHQIGKFFGPYPSAYSARD 120 Query: 134 TINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSG 193 T+ LQ+ F +R C +S F R RPCL +QIKRCS PC G +S E Y E V+ + +FL G Sbjct: 121 TLLVLQKLFNVRQCENSYFSQRKRPCLQYQIKRCSAPCVGLVSPEDYKEDVNNSIRFLQG 180 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFSLYHNK 251 L +++ M QA ++E A+ +RDRL+ L +Q D ++ + Sbjct: 181 DTKELNQELIAKMEQAAADLEFEKAVFYRDRLSLLREVQAQQAVFKVKGEADILAIAYQA 240 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCPENILLSEEA 309 + C+Q G+ G ++F Q+LS F+ FY P ++++ Sbjct: 241 GVTCVQIMHVRNGRMLGGKSYFPDM-LGDDLGQMLSDFMANFYFQVADEVPSELIVNTAL 299 Query: 310 EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDF 369 + LE + +Q+G KV+I + + + +E A +N + +LS + Sbjct: 300 PDRKELEEALAQQFGKKVQIKSSVRETRAEWLELAEMNVQHAIKGQLSNHLELNERFHQL 359 Query: 370 TKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCA 429 + P IE +D SH MG + + VV + G K YR+F + + DD A Sbjct: 360 EQVVGRPIDR--IECFDISHTMGEAPIASCVVFDQGGARKRDYRQFAIQD--ITAGDDYA 415 Query: 430 MMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE 489 MR L RR+ + + PD++++DGGKGQL A V+++L +E Sbjct: 416 AMRQALTRRYKKAM-------------------LPDLLLIDGGKGQLHMAMEVMQELGLE 456 Query: 490 NRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR 549 ++ ++KG R G+E G + L L+ IQ++RDEAHRFAIT HR +R Sbjct: 457 AF--MVGVSKGEGRKPGLETLHFTDGTKIQLPEDSKALHLIQQVRDEAHRFAITKHRAKR 514 Query: 550 -KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 K+ + S L+ I G+GP R+R LL FG ++ + ++S + L + G+ + +A IY H Sbjct: 515 DKRRSTSVLEAIPGLGPKRRRDLLTHFGGIQGVLKASEKELTVVPGLGEVMARTIYKILH 574 Query: 609 K 609 + Sbjct: 575 E 575 >gi|90408955|ref|ZP_01217088.1| excinuclease ABC subunit C [Psychromonas sp. CNPT3] gi|90309932|gb|EAS38084.1| excinuclease ABC subunit C [Psychromonas sp. CNPT3] Length = 612 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 216/618 (34%), Positives = 326/618 (52%), Gaps = 30/618 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY+M D+ V+YVGKA NL+KR+ SY + ++S I +I TVT Sbjct: 12 TLTSAPGVYRMFDVREEVIYVGKAKNLKKRLNSYFSLTQKHPKTLALVSHIAHIEVTVTH 71 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-STIQGSYFG 123 TE EAL+LE N IK+ KP++NILLRDDKS+PY+ ++ HK P L R +G+YFG Sbjct: 72 TETEALILEHNFIKQYKPKYNILLRDDKSYPYLFLS-AHKHPQLSLVRRKNQKRKGTYFG 130 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ S AV ++N + + F +R C+DS + +R+R CL FQ+KRC PC S ++Y Sbjct: 131 PYPSGSAVRSSLNLMNKLFPIRQCSDSYYANRSRACLQFQLKRCLAPCVKGFSEQEYSHQ 190 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--R 241 V A +FL G + + E + M A+ + +E A I RD++ +L +Q + + Sbjct: 191 VALASEFLQGKSQQVIETLIVEMQSASTQLAFEKAAIRRDQIQSLKKVQEQQWVSGDIEQ 250 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDK 297 +D L + + +A F G+ G+ +F K S+ ++L FL QFY + Sbjct: 251 VDVLGLSYEQGVASFHLLFIRQGRILGSRNYFPKVPLHSSKDELLLAFLSQFYLSGQNGR 310 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P+ ILLS++ + + YKV++ V +G + K I A NA + + L+ Sbjct: 311 AVPKEILLSDDFTDRHSFTALLSEYCDYKVQLKVDVRGTRGKFIALAKTNAITALSSHLA 370 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + S +L +R+E YD SH+MG V VV ENG K+ YR FN+ Sbjct: 371 KKSSLSKRYLLLEGFLSLDAPIRRMECYDISHMMGEKTVASCVVFDENGAKKSAYRHFNI 430 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + DD A M VL RRF + + + PDV+ +DGG GQLS Sbjct: 431 QG--ITPGDDYAAMAQVLSRRFKD---------------KQTLENIPDVIFIDGGLGQLS 473 Query: 478 AAQGVLKKL--NVENRIT-IISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRL 533 A+ VL KL N+ + ++ IAKG R AG E + + + L ++ P L+ IQ + Sbjct: 474 QAEKVLDKLRDNLSLKWPLLVGIAKGVARKAGEETLILAQTHQILDIDSDSPALHLIQEI 533 Query: 534 RDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDE+HRFAI HR +R KK S L+ I G+G +++ LL FG ++ I ++ + LA + Sbjct: 534 RDESHRFAILGHRGQRDKKRRSSTLENILGVGVKKRQQLLNHFGGLQGIKVATIDELAKL 593 Query: 593 EGISKKIACKIYNHFHKN 610 GIS +A +IY H + Sbjct: 594 SGISVHLATRIYEQLHGH 611 >gi|148381321|ref|YP_001255862.1| excinuclease ABC subunit C [Clostridium botulinum A str. ATCC 3502] gi|153931930|ref|YP_001385697.1| excinuclease ABC subunit C [Clostridium botulinum A str. ATCC 19397] gi|153936269|ref|YP_001389103.1| excinuclease ABC subunit C [Clostridium botulinum A str. Hall] gi|229558017|sp|A7FYX4|UVRC_CLOB1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|229558018|sp|A5I7A5|UVRC_CLOBH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|148290805|emb|CAL84939.1| excinuclease ABC subunit C [Clostridium botulinum A str. ATCC 3502] gi|152927974|gb|ABS33474.1| excinuclease ABC, C subunit [Clostridium botulinum A str. ATCC 19397] gi|152932183|gb|ABS37682.1| excinuclease ABC, C subunit [Clostridium botulinum A str. Hall] Length = 618 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 188/619 (30%), Positives = 312/619 (50%), Gaps = 19/619 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 + +P+ PGVY M + G ++YVGKA L+ R++ Y + H+ ++ M+ I + Sbjct: 7 QLKNLPDKPGVYLMKNNLGEIIYVGKAKILKNRVRQYFQKSQKHSEKVKAMVKNIEEFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE N+IK+ +P++NILL+DDK +P+I +T P + R + Sbjct: 67 IITDSEIEALILECNLIKKYRPKYNILLKDDKHYPFIKVTLAEDFPRVISTRKVTKDGSK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT--RPCLLFQIKRCSGPCTGEISSE 178 YFGP+ +V+ I +++TF +R+C ++ RPCL +QI C PC I Sbjct: 127 YFGPYVDGSSVKDIIELIKKTFPIRTCKKNIVEEAKAIRPCLNYQIGLCKAPCAQYIKKS 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 +Y E + + K LSG + ++ E NM +A ++E A + RD++ + I Sbjct: 187 EYRETIDDVIKLLSGKHLDIVENFKLNMEKAAENLEFEKAAMLRDKINIIEKIGEKQKII 246 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 ++ D SLY + C Q F G+ G F ++ ++ ++ ++S FL++FY Sbjct: 247 LNNFDNEDYISLYSDGKDTCFQVFFLRNGKIVGREHFIIEDTFDTNSSTLISNFLKEFYG 306 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351 + E+ +LLE + K I +P +GEK+ I+ NA Sbjct: 307 GTAYIPKTIYVPNIEDEALLEQWLTLKKESKSTIKIPIKGEKKNILVLVEKNAKTTLENF 366 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 + L + + +LKD L P RIE +D S+I G +VG MVV + + Sbjct: 367 KLKYLQEKALYDNVLKDLKNILRLQEEPIRIEAFDISNIQGFDSVGSMVVFEKGRAKPSD 426 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILD 470 YR+F N VK DD M+ +L RRF + + + + F +PD++++D Sbjct: 427 YRRF--KINTVKGADDYKSMKEILTRRFQHGLSEIKSIQDRKLEFSSGKFSVFPDLILMD 484 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ++ A VL N++ I + + K K + GE +++N ++ FI Sbjct: 485 GGKGQINIALEVLNAFNID--IPVCGMVKDNKHRTRG---LIYNGEEIIINKYGSVMKFI 539 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DE HRFAI+ HR R K + +S LD+I IG RK+ LL +F ++ I +++ E L Sbjct: 540 TRVQDEVHRFAISYHRSLRGKNSFHSLLDDIPNIGEKRKKDLLFNFKSIDNIKKATYEEL 599 Query: 590 ASIEGISKKIACKIYNHFH 608 SI + KK A + F Sbjct: 600 LSIPSMDKKSAECVLEFFK 618 >gi|229816361|ref|ZP_04446667.1| hypothetical protein COLINT_03410 [Collinsella intestinalis DSM 13280] gi|229808062|gb|EEP43858.1| hypothetical protein COLINT_03410 [Collinsella intestinalis DSM 13280] Length = 661 Score = 491 bits (1265), Expect = e-136, Method: Composition-based stats. Identities = 171/634 (26%), Positives = 303/634 (47%), Gaps = 49/634 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P+ PG Y D +G V+YVGKA NL+ R++ Y+ + +I M+ + + + V Sbjct: 32 EVPDDPGCYLWKDASGEVIYVGKAKNLRARLRQYVTLTDDRAKIPLMMQLVASFDYIVVE 91 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EAL+LE +I + P FN+ +DDKS+PYI IT PA+ R+ Y+GP Sbjct: 92 SEHEALVLERELIAQYHPYFNVDYKDDKSYPYIAITRGDVFPAIKYTREKHRPDTRYYGP 151 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFR---------------------HRTRPCLLFQ 163 + A +TI++L++ + + + + ++ ++ RPC + Sbjct: 152 YTDSRAARETIDTLRKVCPICTASCAEWKRVRRLLEKRPDDTDVIELICSNQGRPCFDYH 211 Query: 164 IKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRD 223 + R G C G I E+Y V ++FLSG L +++ +M +A D+E A + Sbjct: 212 VGRGPGVCAGMIGREEYAVNVRRVERFLSGQRRELVDELKADMAEAAADLDFERAGRIKR 271 Query: 224 RLAALSHIQNHNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSES 280 RL + + + ++ D Y + +A G+ + TC F L + Sbjct: 272 RLEVIDGLDDRQQVVFPTSVDLDLIGFYREETIAGTCVFVVREGRVQRTCEFILDKGFDV 331 Query: 281 TNAQILSYFLRQFYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRK 339 ++ S F++++Y + P + L+ E + ++ + G ++ P++GEK + Sbjct: 332 DEVELASGFVKRYYDETADVPHEVDLAIELPDADVVGEWLTGKRGRVCRLHRPQRGEKHR 391 Query: 340 IIEQALINAHRSHTQKLST----EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSA 395 +++ A NA + + + + L AL P RIE +D S + G Sbjct: 392 LLQMAERNARHALMRYMMRTGYSDDRTNQALLQLESALALDAPPMRIECFDISTLHGAFT 451 Query: 396 VGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK 455 V MVV K+QYR+F + + +D M VL RR+ + Sbjct: 452 VASMVVFTNGKPDKSQYRRFKIRAE-LDEANDFVSMSEVLGRRY-----------APERM 499 Query: 456 QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG 515 + F S PD++++DGG+ QL+AA L++L ++ I + +AK + E F Sbjct: 500 ADERFGSRPDLLVVDGGRPQLTAAMRQLEELGLD--IPVCGLAKADE-----EVFVPWDD 552 Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQS 574 +VL LY I+++RDE+HRFAIT HR+ R KA S LDE+ G+GP RK+ +++ Sbjct: 553 TPIVLPSGSASLYLIKQVRDESHRFAITFHRELRGKAMTVSVLDEVPGVGPTRKKAIMKR 612 Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 FG++K + +S +A + G+ ++A ++ Sbjct: 613 FGSMKRLRAASEAEIAEVPGVPAEVARSVFESLR 646 >gi|332288737|ref|YP_004419589.1| excinuclease ABC subunit C [Gallibacterium anatis UMN179] gi|330431633|gb|AEC16692.1| excinuclease ABC subunit C [Gallibacterium anatis UMN179] Length = 588 Score = 491 bits (1265), Expect = e-136, Method: Composition-based stats. Identities = 197/607 (32%), Positives = 331/607 (54%), Gaps = 33/607 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D V+YVGKA NL+KR+ SY N ++ + +++ I++I T+T +E EALLLE Sbjct: 1 MYDRNNTVIYVGKAKNLKKRLSSYFRKNVNSKKTEALVASIDHIDTTITHSETEALLLEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK+ +P +N+LLRDDKS+PYIL+T + P + +R + I G YFGP+ AV +T Sbjct: 61 NFIKQYQPHYNVLLRDDKSYPYILLT-HERHPRITSYRGAKKIAGEYFGPYPHSSAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHEAKKFLSG 193 ++ +Q+ F +R C +SV+ +R+RPCL +QIKRC PC ++ E+Y + V A+ FL G Sbjct: 120 LSLMQKLFPIRQCENSVYNNRSRPCLQYQIKRCLAPCVAGYVTDEEYQQQVELARLFLQG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMDCFSLYHN 250 + + + M QA+ + D+E+A +RD++ A+ + + +D ++ + Sbjct: 180 KDQQVVTHLIEKMEQASNRLDFEAAARYRDQIQAVRSVMEKQFVSNDRLDDIDIIAIAYK 239 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLS 306 LAC+Q F G+ G ++F K + + A+++ FL QFY + P++I++ Sbjct: 240 SGLACVQVLFIRHGKILGNRSYFPKIPANTQIAEVIETFLGQFYLQAHQGRSIPDSIVID 299 Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366 +L+ +Q G +V+I +GEK + ++ A NA + T +L + + Sbjct: 300 HSLAGKEMLQTLLSEQAGRQVQIQDKVKGEKNRYLQLAQTNASVALTTQLKQQGRIEERY 359 Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426 + + + +R+E +D SH MG + + VV G G +K+ YR+FN+ D Sbjct: 360 QALQQLLHMD-KIQRMECFDISHTMGENTIASCVVFGSEGPLKSDYRRFNIEGT--HGDD 416 Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486 AM + + +R L + PD++ +DGGKGQL+ A V L Sbjct: 417 YAAMEQALKKRYDKDLTVEK----------------IPDIIFIDGGKGQLNRALAVFDNL 460 Query: 487 NV---ENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAI 542 NV +++ +I +AKG R AG+E + E + L + L+ IQ +RDE+H AI Sbjct: 461 NVSWDKHKPLLIGVAKGVDRKAGLETLLIGNSEREMHLEPDNLALHLIQHIRDESHNHAI 520 Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 + HRK+R+KA S L+ I G+G R++ LL+ G ++ + ++ + LAS+ GIS+ +A Sbjct: 521 SGHRKKRQKAFIQSGLESIEGVGAKRRQALLKYLGGLQGVRAATIDELASVPGISRSLAE 580 Query: 602 KIYNHFH 608 KI+ Sbjct: 581 KIFETLK 587 >gi|282897007|ref|ZP_06305009.1| UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C) [Raphidiopsis brookii D9] gi|281197659|gb|EFA72553.1| UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C) [Raphidiopsis brookii D9] Length = 631 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 197/625 (31%), Positives = 305/625 (48%), Gaps = 37/625 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 ++P PGVY M D ++Y+GK+ L+ R++SY N T RI M+ QI +I F +T Sbjct: 22 EIPLGPGVYLMRDDRDTIIYIGKSRKLRSRVRSYFRDYTNKTQRINTMVQQITDIEFILT 81 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST------- 116 TE EAL LEAN+IK+ +P FN+LL+DDK +PY+ IT + P L+ R Sbjct: 82 DTEAEALALEANLIKQHQPYFNVLLKDDKKYPYLCITWSEEYPRLFITRKRQRGTQKLQG 141 Query: 117 ---IQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 + Y+GP+ + + ++ Q+ F +R +F + RPCL + I RC G C Sbjct: 142 DRPHKDKYYGPYTDSTLLREVLHICQQIFPMRQRPQPLF--KDRPCLNYDIGRCPGVCQK 199 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 +S E Y + V + G L + + M A + ++E+A RD++ L + Sbjct: 200 LVSVEDYHKVVEKVAMVFQGRTEELIDILTLQMETAVSELNFEAAAGIRDQIIGLKSLTA 259 Query: 234 HNDSIYNR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYF 289 D +L + A IQ G+ G F +E +IL Sbjct: 260 RQKVSLPDDTVSRDAVALATDNQQAHIQLFQIRAGKLVGRLAFIANAHAE--PGEILQRV 317 Query: 290 LRQFYTDKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 L + Y P IL+ + +L ++ G KV I P + K ++IE Sbjct: 318 LEEHYQTADSVEIPPEILVQHKLPHGDILADFLRQRKGKKVNIITPLRQTKAELIEMVEK 377 Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 NA + +Q L+D + L +P RIE YD SHI G +AVG VV + Sbjct: 378 NAQYELKRMQKMGEVNQKCLEDLAEILGLLDLPHRIEGYDISHIQGSNAVGSQVVFIDGL 437 Query: 407 FVKNQYRKFNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWP 464 K YR + + +V DD + V+ RRF + I+N P+ WP Sbjct: 438 PAKQYYRHYKIKNPNVTIGHSDDFTSLAEVIYRRFRKYIEN-------PQLPRQGNDDWP 490 Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524 D++++DGGKGQLSA +L+++++ + +IS+AK + E F + + L+ Sbjct: 491 DLIMIDGGKGQLSAVVNILQEVDLLKDLQVISLAKKRE-----EIFLPDESQPLITQTEQ 545 Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583 P L ++RLRDEAHRFAI HR++R S LDEI G+G R++LLL F T+ I + Sbjct: 546 PGLQLLRRLRDEAHRFAIGFHRQQRSNQWQRSCLDEIPGLGAHRQKLLLAHFRTIDYIRQ 605 Query: 584 SSPETLASIEGISKKIACKIYNHFH 608 ++ + LA GI K+A +I+++FH Sbjct: 606 ATVQQLAEPPGIGLKLAQQIFSYFH 630 >gi|317124808|ref|YP_004098920.1| excinuclease ABC subunit C [Intrasporangium calvum DSM 43043] gi|315588896|gb|ADU48193.1| Excinuclease ABC subunit C [Intrasporangium calvum DSM 43043] Length = 709 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 195/695 (28%), Positives = 310/695 (44%), Gaps = 87/695 (12%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 ++P PGVY+ D GRV+YVGKA +L+ R+ SY R M++ ++ + Sbjct: 10 KPGEIPVDPGVYRFRDAHGRVIYVGKAKSLRPRLSSYFQDIAALHPRTATMVTTAASVEW 69 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TEVEAL LE + IK PRFN+ RDDKS+P++ +T + P R + Sbjct: 70 TVVRTEVEALALEYSWIKEFDPRFNVKYRDDKSYPFLAVTMGDEFPRAQVMRGAKRRGTR 129 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISS 177 YFGP+ A+ +T++ L R F +R+C+ VF+ RPCLL I +CS PC G +S+ Sbjct: 130 YFGPYGHAWAIRETLDLLLRVFPVRTCSAGVFKRAAASGRPCLLGYIDKCSAPCVGRVSA 189 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 +++ E F+SG +++ M A+ + ++E A RD L A+ Sbjct: 190 DEHRAIAEEFCDFMSGDTTRFLKRLETRMKDASARLEFEEAARLRDDLNAMRKALEKQAV 249 Query: 238 IYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN-------AQILS 287 + D F++ + A +Q G+ RG + ++ +SE Q+ Sbjct: 250 VLGDATDADVFAVVDDDLEAAVQVFHVRGGRIRGQRGWVVEKESEDLPLLIEHLLQQVYG 309 Query: 288 YFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347 + P +L+ + + + + G V + VP++G+KR+++E N Sbjct: 310 DVDPDHGSRDVVPREVLVPLLPTDPEAVAVWLSDRRGSTVSVRVPQRGDKRRLMETVRRN 369 Query: 348 AHRSHTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVG 403 A +S + L++ LP P RIE YD SH+ G + V MVV Sbjct: 370 AEQSLARHKVARAGDLTLRSQALQELQDHLGLPEAPLRIECYDVSHVQGTNVVASMVVFE 429 Query: 404 ENGFVKNQYRKFNLH------------PNDVKTQDDCAMMRMVLERRFSQLIKNEE---- 447 + K++YR+F + + DD A MR VL RRF + ++ E Sbjct: 430 DGLARKSEYRRFIVRGGAPTADGGMAPGSQPGPVDDTAAMREVLGRRFRRYLEEAEGTGD 489 Query: 448 ----------------------------------------------NLNFHPKKQEYSFP 461 + F Sbjct: 490 LDLATGVESGIGSGVGSGVGSGVGSGGGSAVDSGDSVTELVDDGVSGPIDPTTGRPRRFA 549 Query: 462 SWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLN 521 P +V++DGG Q++AAQ VL +L +E + ++ +AK + E + + ++L Sbjct: 550 YPPSLVVVDGGLPQVNAAQAVLDELGIE-EVAVVGLAKRLE-----EVWLPRTDYPVILP 603 Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKM 580 LY +QRLRDEAHRFAIT HR+RR K S LD + G+G R+R LL+ FG+VK Sbjct: 604 RTSEGLYLLQRLRDEAHRFAITFHRQRRSKAMTASALDGVQGLGAARQRALLKHFGSVKR 663 Query: 581 ISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615 + + PE + ++ GI +A I H + P Sbjct: 664 LRAAEPEAIMAVPGIGPALAAAIVAHLSETVPAEP 698 >gi|227833020|ref|YP_002834727.1| excinuclease ABC, subunit C [Corynebacterium aurimucosum ATCC 700975] gi|262182492|ref|ZP_06041913.1| excinuclease ABC subunit C [Corynebacterium aurimucosum ATCC 700975] gi|254764929|sp|C3PG35|UVRC_CORA7 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|227454036|gb|ACP32789.1| excinuclease ABC, subunit C [Corynebacterium aurimucosum ATCC 700975] Length = 684 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 186/678 (27%), Positives = 309/678 (45%), Gaps = 78/678 (11%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D RV+YVGKA NL+ R+ +Y R M+ ++ +TV Sbjct: 13 SIPTDPGVYKFRDENRRVIYVGKAKNLRARLSNYFQDITQLHPRTRQMVLTAASVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +EVEAL LE IKR PRFN++ RDDK++P + ++ IP + +R YFG Sbjct: 73 ASEVEALQLEYTWIKRFDPRFNVMYRDDKTYPMLAVSVGESIPRAFFYRGPRRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ AV ++++ L R F +R+CA VF RPCLL I +C PC G +S E++ Sbjct: 133 PYSHAWAVRESLDLLTRIFPMRTCAKGVFNRHERLGRPCLLGYIGKCDAPCIGRVSPEEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 E V++ F++G +++++ + M +A ++E A RD L A+ + + Sbjct: 193 RETVNQLISFMNGNTAPVRKRVTQRMEEAAENLEFELAARLRDDLGAIDKLMEQQAVVLP 252 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQI------------ 285 D + ++ A +Q G+ RG + ++ + + Sbjct: 253 DGTDADLIAFSSDELEAAVQIFHVRTGRIRGQRGWVVERSGDQATTDVVEEGQADPGLPA 312 Query: 286 -LSYFLRQFYTD-------------------------------KPCPENILLSEEAEETS 313 + FL QFY+D P IL+ EE Sbjct: 313 LIQNFLIQFYSDAVERQRQEAAEDAKLERRGVDQESHAEPRQGNAIPREILVQALPEEAE 372 Query: 314 LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE----ISHQMILKDF 369 ++I + G ++ + VP++G+KR ++E NA Q + L++ Sbjct: 373 EVKIVLEELRGAQIDVRVPQRGDKRALLETVERNAKEQLKQHKLKRVGDLTARSAALQEL 432 Query: 370 TKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDC 428 + + P RIE D SHI G V +VV + K+ YR++ + + +D Sbjct: 433 QEALGMDSAPLRIECTDISHIQGTDVVASLVVFEDGLPRKSDYRRYRIKEAAGDGRSNDV 492 Query: 429 AMMRMVLERRFSQLIKN---------------EENLNFHPKKQEYSFPSWPDVVILDGGK 473 + V RRF + EE + Q P + I+DGG Sbjct: 493 GSIAEVTRRRFKHHHDDKRAVPDEELENTTFAEEMVREEAASQTKRSSYPPQLFIVDGGA 552 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 Q++AAQ V +L + + +T+I +AK + E + E ++L L+ +Q L Sbjct: 553 PQVAAAQAVFDELGIVD-VTLIGLAKRLE-----EVWVPGDDEPVILPRNSQALFLLQHL 606 Query: 534 RDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDEAHR AI+ HR++R K S LD + G+GP R+ L++ FG+VK + +S E +A + Sbjct: 607 RDEAHRVAISYHRQQRSKRMRSSVLDAVPGLGPQRRTDLVKHFGSVKKLKEASVEEIAEV 666 Query: 593 EGISKKIACKIYNHFHKN 610 +G K+A +++H H + Sbjct: 667 KGFGPKLAQTVFDHLHAS 684 >gi|294649057|ref|ZP_06726502.1| excision endonuclease subunit UvrC [Acinetobacter haemolyticus ATCC 19194] gi|292825042|gb|EFF83800.1| excision endonuclease subunit UvrC [Acinetobacter haemolyticus ATCC 19194] Length = 599 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 191/610 (31%), Positives = 306/610 (50%), Gaps = 30/610 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + + PGVY+ML G +LYVGKA NL+ R+ SY + ++++I +I V Sbjct: 15 HLTQLPGVYKMLGKDGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVARIYDIETLVVR 74 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFG 123 +E EALLLE N+IK +P +NI+LRDDKS+ YI ++ P + R Q G +FG Sbjct: 75 SETEALLLEQNLIKLHRPPYNIMLRDDKSYVYIFVSADKPYPRIASGRGKGKHQIGKFFG 134 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ S + T+ +LQ+ F +R C +S F R RPCL +QIKRC+ PC G IS E Y E Sbjct: 135 PYPSAYSARDTLLTLQKLFNVRQCENSYFSQRKRPCLQYQIKRCTAPCVGLISPEDYKED 194 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNR 241 V+ + +FL G L +++ M QA ++E A+ +RDRL+ L +Q Sbjct: 195 VNNSIRFLQGDTKELNQELIGKMEQAAEALEFEKAVFYRDRLSLLREVQAQQAVFKIKGE 254 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DKPCP 300 D ++ H + C+Q + GQ G ++F + + + ++ P Sbjct: 255 ADILAIAHQAGVTCVQIMYVRNGQMLGGKSYFPDMLGDDLGQMLSDFIANFYFQVADEIP 314 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 ++++ E + LE + + + K++I + + + E A +N + KLS + Sbjct: 315 VELIVNLEVPDKKQLEEALQQTFNKKIQIKHKVRETRAEWQELAQMNVQHAIKGKLSNHL 374 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 + P IE +D SH MG + + VV + G K YR+F + Sbjct: 375 ELNERFHQLEQVVGRPIDR--IECFDISHTMGEAPIASCVVFDQGGARKRDYRQFAIQD- 431 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 + DD A MR L RR+ + + PD++++DGGKGQL A Sbjct: 432 -ITGGDDYAAMRQALIRRYKKNM-------------------LPDLLLIDGGKGQLHMAM 471 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 V+++L ++ +I ++KG R G+E G + L L+ IQ++RDEAHRF Sbjct: 472 EVMQELELDAF--MIGVSKGEGRKPGLETLHFTDGTKIQLAEDHKALHLIQQVRDEAHRF 529 Query: 541 AITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AIT HR +R K+ + S L+ I G+GP R+R LL FG ++ + +S + L + G+ + + Sbjct: 530 AITRHRAKRDKRRSSSVLEAIPGLGPKRRRDLLTHFGGIQGVLNASEKELTLVPGLGEVM 589 Query: 600 ACKIYNHFHK 609 A IY H+ Sbjct: 590 ARTIYKILHE 599 >gi|317129852|ref|YP_004096134.1| excinuclease ABC, C subunit [Bacillus cellulosilyticus DSM 2522] gi|315474800|gb|ADU31403.1| excinuclease ABC, C subunit [Bacillus cellulosilyticus DSM 2522] Length = 592 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 187/614 (30%), Positives = 297/614 (48%), Gaps = 41/614 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M + G ++YVGKA L+ R++SY + H + ++S+I + + VT + Sbjct: 11 VPAQPGCYLMKNKHGTIIYVGKAKLLRNRVRSYFTGS-HDKKTQRLVSEIRDFEYIVTSS 69 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EALLLE N+IK+ +P++N+LL+DDKS+PY+ IT K + P L R G YFGP+ Sbjct: 70 NIEALLLEQNLIKKHEPKYNVLLKDDKSYPYLKIT-KEEHPRLITTRKVKKDGGKYFGPY 128 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A +T L R + LR C R CL + I +C PC +++ EK E V Sbjct: 129 PNVHAANETKKLLDRLYPLRKCRTLP----DRVCLYYHIGQCLAPCEFDVTQEKNQEMVQ 184 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E KFL+GG+ +KE + M +A+ + ++E A RD++ + + Sbjct: 185 EITKFLNGGHKEIKENLTNKMLEASEELNFERAQELRDQVQHIEAVMEKQKMTMTDEVDR 244 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F ++K C+Q F G+ E + P+ Sbjct: 245 DVFGYAYDKGWMCVQVFFIRQGKLIERDVSMFPMYQEPEDDFYTYVGQFYLNDQHRKPKE 304 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 IL+ E +E + E K + PK+G+K+++++ A NA Sbjct: 305 ILIPEVIDEAVVQEFIQVKTFK-------PKKGQKKQLVDLANKNAQIALKEKFDLIERD 357 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E + ++ + RIE +DNS+I G V MV + K YRK+ + Sbjct: 358 EQKTIVAIERLGAALNIETP-HRIEAFDNSNIQGVDPVSAMVSFLDGKPDKKNYRKYKVK 416 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+ +L+K + L PD++++DGGKGQ+SA Sbjct: 417 D--VEGPDDYESMREVVRRRYIRLLKENQPL--------------PDLIVIDGGKGQISA 460 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 AQGVL+ + I + + K K E + L Y +QR++DE H Sbjct: 461 AQGVLED-ELGIYIPVCGLVKDEKHRTSQ-LMIGDPAEVVPLKRTSQEFYLLQRIQDEVH 518 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR RK++ + S LD++ GIG RKR LL+ FG++K I ++ E + + GI K Sbjct: 519 RFAITFHRNVRKQSMFSSILDDVEGIGEKRKRELLKHFGSLKRIKEANIEEIEGV-GIPK 577 Query: 598 KIACKIYNHFHKNT 611 +A +++ + Sbjct: 578 LVAKALFDKIQEEE 591 >gi|209528273|ref|ZP_03276736.1| excinuclease ABC, C subunit [Arthrospira maxima CS-328] gi|209491293|gb|EDZ91685.1| excinuclease ABC, C subunit [Arthrospira maxima CS-328] Length = 624 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 203/630 (32%), Positives = 307/630 (48%), Gaps = 39/630 (6%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIR 59 M +++P PGVY M D +LY+GK+ L+ R++SY +NH+HRI MI Q+ +I Sbjct: 15 MRLKEIPPVPGVYFMKDGNENILYIGKSKKLRSRVRSYFRDRHNHSHRINLMIQQVTDIE 74 Query: 60 FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TI 117 F VT TE EAL LEAN+IK +P FN+LL+DDK +PY+ IT P ++ R + Sbjct: 75 FIVTDTEAEALALEANLIKNHQPHFNVLLKDDKKYPYLCITWSEPYPRIFITRKRNLSNP 134 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 + Y+GP+ + + ++R F LR +F + RPCL + I RC G C IS Sbjct: 135 KDRYYGPYVDTGLLRSNLQLVKRLFPLRQRPKPLF--KDRPCLNYDIGRCPGVCQQMISP 192 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E Y + V + G L + + M QA + ++E+A RDR+ L + Sbjct: 193 EDYHQIVQKVAMVFQGRTEELIKNLTAQMQQAAAELNFETAAKFRDRIQGLQSLNQDQKV 252 Query: 238 IYNRM----DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ------ILS 287 D +L + A +Q G G F K T I+ Sbjct: 253 SLPDETVSLDAIALATDGQQASVQLFQIRAGHLVGRLGFLAKVYPSETALTSLELGGIIQ 312 Query: 288 YFLRQFYTDKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344 L++ Y P I+L ++ L+ + G KV + P++ K +I Sbjct: 313 RVLQEHYQTVDAVEIPSEIVLQYSLQDGELVADWLSDRKGRKVTLITPQRQAKLDLIAMV 372 Query: 345 LINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGE 404 NA+ + H L+D T+ LP +P RIE YD SHI G AV VV + Sbjct: 373 ERNANYELMRLQKLSDRHHQSLQDLTEILDLPDLPHRIEGYDISHIQGSDAVASRVVFID 432 Query: 405 NGFVKNQYRKFNLHPNDVKT--QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPS 462 K YR++ + DV + DD A + V+ RRF Q Sbjct: 433 GLPAKQHYRQYKIKNPDVHSGRSDDFASLAEVIGRRFRDY-------------QNLEPQD 479 Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522 PD++++DGGKGQLSA VL+ L++ + +IS+AK + E F + + L + Sbjct: 480 KPDLIMIDGGKGQLSAVVKVLQGLDILEELKVISLAKRRE-----EIFVPGESQPLTTHP 534 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMI 581 P + ++RLRDEAHRFA++ HR +R K S LD+I G+G R++LLL F ++ I Sbjct: 535 EQPGVQLLRRLRDEAHRFAVSFHRNQRSKRMKRSHLDDIPGLGHHRQKLLLGHFRSIDYI 594 Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNT 611 ++P LA + GI +K+A +IY++FH +T Sbjct: 595 RMATPTQLAEVPGIGEKLARQIYDYFHPST 624 >gi|221310790|ref|ZP_03592637.1| excinuclease ABC subunit C [Bacillus subtilis subsp. subtilis str. 168] gi|221320033|ref|ZP_03601327.1| excinuclease ABC subunit C [Bacillus subtilis subsp. subtilis str. JH642] gi|255767657|ref|NP_390727.2| excinuclease ABC subunit C [Bacillus subtilis subsp. subtilis str. 168] gi|251757372|sp|P14951|UVRC_BACSU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|225185285|emb|CAB14809.2| excinuclease ABC (subunit C) [Bacillus subtilis subsp. subtilis str. 168] Length = 590 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 176/613 (28%), Positives = 306/613 (49%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D V+YVGKA L+ R++SY + H + ++++I + + VT + Sbjct: 12 LPDQPGCYLMKDRQQTVIYVGKAKVLKNRVRSYFTGS-HDAKTQRLVTEIEDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++N++L+DDK++P+I +T + P L R+ +G YFGP+ Sbjct: 71 NLEALILEMNLIKKHDPKYNVMLKDDKTYPFIKLT-HERHPRLIVTRNVKKDKGRYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A +T L R + LR C+ + R CL + + +C PC +IS E E V Sbjct: 130 PNVQAARETKKLLDRLYPLRKCS----KLPDRVCLYYHLGQCLAPCVKDISEETNRELVE 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 +FL GG + +K+++ M++A ++E A RD++A + N Sbjct: 186 SITRFLRGGYNEVKKELEEKMHEAAENLEFERAKELRDQIAHIESTMEKQKMTMNDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ ++K C+Q F G+ E+ + + P+ Sbjct: 246 DVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPLYQEADEEFLTFIGQFYSKNNHFLPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 IL+ + +++ + ++ + + PK+G K++++ A NA + + Sbjct: 306 ILVPDSIDQSMIEQLL-------ETNVHQPKKGPKKELLMLAHKNAKIALKEKFSLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E ++ + + + P RIE +DNS+I G + V M+V + K +YRK+ + Sbjct: 359 EERSIGAVQKLGEALNI-YTPHRIEAFDNSNIQGTNPVSAMIVFIDGKPYKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V DD MR V+ RR++++++ PD++I+DGGKGQ++A Sbjct: 418 T--VTGPDDYGSMREVVRRRYTRVLREN--------------LPLPDLIIIDGGKGQINA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ V++ +L ++ I I +AK K E L Y +QR++DE Sbjct: 462 ARDVIENELGLD--IPIAGLAKDEKHRTSN-LLIGDPLEVAYLERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAI+ HR+ R K+A+ S LD+I GIG RK++LL+ FG+VK + +S E + G+ Sbjct: 519 HRFAISFHRQIRGKSAFQSVLDDIPGIGEKRKKMLLKHFGSVKKMKEASLEDIKKA-GVP 577 Query: 597 KKIACKIYNHFHK 609 A +Y+ K Sbjct: 578 AAAAQLLYDKLQK 590 >gi|320546570|ref|ZP_08040885.1| excinuclease ABC subunit C [Streptococcus equinus ATCC 9812] gi|320448955|gb|EFW89683.1| excinuclease ABC subunit C [Streptococcus equinus ATCC 9812] Length = 599 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 169/619 (27%), Positives = 293/619 (47%), Gaps = 40/619 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D G+++YVGKA NL+ R++SY H +++T + ++S+I + + Sbjct: 8 KLELLPDSPGCYIHKDKNGKIIYVGKAKNLKNRVRSYFHGSHNT-KTELLVSEIEDFEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + EALLLE N+I+ P++NI L+DDKS+P+I IT + P L R Y Sbjct: 67 VTGSNTEALLLEINLIQENMPKYNIKLKDDKSYPFIKITVNEQYPRLMITRQIKKDGAMY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ A + L R F + C + + C + + +C + + ++ Sbjct: 127 FGPYPDSGAATEIKRLLDRIFPFKKCTNP----ANKVCFYYHLGQCKAHTICHVDHDYFV 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E + K FL G ++ + + + M +A+ ++E A +RD L A+S ++ + Sbjct: 183 EMAQDVKNFLDGKDNKIVDGLKDKMQKASDMMEFERAAEYRDLLQAISTLRTKQRVMNQD 242 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + + Sbjct: 243 MMDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDPEEDFLTYVGQFYRDSKHF 302 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ + + ++ +E + + K P++GEK++++ A NA + Sbjct: 303 VPKEVFIPQDIDEELVKAVVDTKVIK-------PQRGEKKQLVNLATKNARVSLQQKFDL 355 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +++ + +P RIE +DNS+I G S V MVV K YRK Sbjct: 356 LEKDIRKTHGAIENIGELLNIPKPV-RIEAFDNSNIQGTSPVAGMVVFVNGKPSKKDYRK 414 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + V DD A MR V+ RR+S+++K+ + PD++I+DGG+G Sbjct: 415 FKIKT--VVGPDDYASMREVIYRRYSRVMKDG--------------LTPPDLIIIDGGQG 458 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+ + + I I + K K E F E + L + +QR++ Sbjct: 459 QVNVARDVI-ENKLGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELPRNSEEFFLLQRIQ 516 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+LL++ F ++ I ++ + + + Sbjct: 517 DEVHRFAITFHRQLRSKNSFSSKLDGIAGLGPKRKQLLMKHFKSLPNIQKADIDDIVN-C 575 Query: 594 GISKKIACKIYNHFHKNTS 612 GI + +A I +K + Sbjct: 576 GIPRNVATAIKEKLNKEKA 594 >gi|119356545|ref|YP_911189.1| excinuclease ABC subunit C [Chlorobium phaeobacteroides DSM 266] gi|189038035|sp|A1BED8|UVRC_CHLPD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|119353894|gb|ABL64765.1| Excinuclease ABC subunit C [Chlorobium phaeobacteroides DSM 266] Length = 631 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 182/631 (28%), Positives = 294/631 (46%), Gaps = 52/631 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRFTVT 63 +P PGVYQ + GRV+Y+GKA NL+ R++SY + + M+ +I +I +T Sbjct: 23 SLPSSPGVYQFKNAQGRVIYIGKAKNLRNRVRSYFRNPQQLFGKTLVMVGKIADIEVIIT 82 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +EVEAL+LE N+IK LKPR+N+ L+DDK++PY++IT+ P + R ++FG Sbjct: 83 SSEVEALILENNLIKELKPRYNVNLKDDKTYPYLVITN-EPFPRILVTRQVKKDGSTWFG 141 Query: 124 PFASVDAVEKTINSL-----QRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 P+ + ++ + R+ LR +++ R + + CL + I +C GPC G ++ E Sbjct: 142 PYTEARQLRSILDFIGSIFPIRSCKLRLSPENISRGKFKVCLDYHIHKCKGPCEGLLTEE 201 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y+ + E + L G + M + +E A + ++ +L + Sbjct: 202 EYLLMIVEITRLLKGKTSATIRSLNERMLSFAKELKFEQAAELKTQIDSLKRYAERQKVV 261 Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D F++ + C G+ G+ ++ + +L+ + ++Y Sbjct: 262 TSDTLDRDVFAVASRNDDGCGVVFKIREGKLLGSERLYMNNTEGVSVQDLLARVVERYYL 321 Query: 296 D--KPCPENILLSEEAEETS--------LLEISFFKQYGYKVKITVPKQGEKRKIIEQAL 345 + P+ I L E + +IS + +++TVP GEK +I+ Sbjct: 322 ETCNLLPDEIFLQTELPAEEKETLENLLISKISAEGKQKRTIRLTVPIIGEKAHLIQLCR 381 Query: 346 INAHRSHTQKLSTEISHQMILKD------FTKKFALPHIPKRIEIYDNSHIMGCSAVGCM 399 NA + L + L++ + LP P RIE +DNSH G V M Sbjct: 382 ENARHHLEEYLIQKQKRGEALREHSGLIALAELLHLPKTPNRIECFDNSHFHGTDYVSSM 441 Query: 400 VVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS 459 V K+ YRKF L V+ DD A M VL RR+S + E Sbjct: 442 VAFVHGKAKKSDYRKFKLKT--VQGSDDYAAMHEVLTRRYSGTLSVE------------- 486 Query: 460 FPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALV 519 PD++++DGGKGQLS A VL L ++ I +I +AK + E F + Sbjct: 487 -LPLPDLIVVDGGKGQLSTAVKVLVSLKLD--IPVIGLAKRIE-----EIFTPHTSDPFN 538 Query: 520 LNMRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTV 578 L P L IQ+LRDEAHRFA+T HRK R ++ + L I GIG + LL+ FG+V Sbjct: 539 LPKTSPALKLIQQLRDEAHRFAVTYHRKLRTERTLETELTTIQGIGEKTAQKLLRHFGSV 598 Query: 579 KMISRSSPETLASIEGISKKIACKIYNHFHK 609 +I + + L + G K A +Y +H Sbjct: 599 DLIRTAGVDELRAAAG--NKTAALLYRFYHP 627 >gi|254520925|ref|ZP_05132980.1| excinuclease ABC, C subunit [Stenotrophomonas sp. SKA14] gi|219718516|gb|EED37041.1| excinuclease ABC, C subunit [Stenotrophomonas sp. SKA14] Length = 612 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 213/586 (36%), Positives = 320/586 (54%), Gaps = 21/586 (3%) Query: 26 GKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLKPRFN 85 GKA L+ R+ SY + + RI MISQI + TVT +E EALLLE +IK L PR+N Sbjct: 36 GKARALRNRVGSYFNGSPKNARIMSMISQIARMDVTVTRSEAEALLLENQLIKSLSPRYN 95 Query: 86 ILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLR 145 + LRDDK++P++L+T + P + HR I G YFGP+ V AV +T+N + + F LR Sbjct: 96 VSLRDDKTYPHVLLT-REDWPRIALHRGPRAIPGRYFGPYPGVTAVRETLNLMHKLFKLR 154 Query: 146 SCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARN 205 SC DSVFR+R+RPCL +QI RCS PC ++ +Y E V A FL G + L ++ Sbjct: 155 SCEDSVFRNRSRPCLQYQIGRCSAPCVELVAPAEYAESVRRAALFLEGKSDELTRELGEQ 214 Query: 206 MNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCFSLYHNKNLACIQTCFFHF 263 M A+ ++E A RD +++L +Q +D ++ + AC+ F Sbjct: 215 MQAASEALEFEQAARLRDLISSLRSMQTRQYVDGRAADLDVLAVAMQGSQACVLLLAFRD 274 Query: 264 GQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQY 323 G+N GT FF +T+ E + ++L+ F+ Q+Y + P ILL E + LL + Sbjct: 275 GRNLGTRPFFPRTNGEESPEEVLAAFVSQYYIEFEPPREILLDREIPDADLLVAALSASA 334 Query: 324 GYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIE 383 KV++ +GE+ +E A NA + +L++ + L KR+E Sbjct: 335 ERKVQLKWNVRGERAGYVELASRNAQLTLATELNSRNAQHARSDALRDMLGLAEPVKRVE 394 Query: 384 IYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLI 443 +D SH +G + V VV G V+ QYR+FN+ + ++ DD A MR ++RRF + + Sbjct: 395 CFDISHTLGEATVASCVVFDAAGPVRAQYRRFNI--SGIEPGDDYAAMRQAIDRRFRRAV 452 Query: 444 KNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR 503 + + PDV+++DGG GQL+ AQ L L VE + ++ +AKG +R Sbjct: 453 EEQ--------------GVLPDVLLIDGGAGQLAQAQAALADLGVEG-VLLVGVAKGVER 497 Query: 504 SAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEING 562 AG E + G L +P L FIQ++RDEAHRFAIT HR RR+KA S L++I G Sbjct: 498 RAGHEALVMPDGRELRPGAANPALQFIQQVRDEAHRFAITGHRGRRQKARMTSKLEDIPG 557 Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 IGP R+ LL+ FG + + + +A +EGI+ +A +IY + H Sbjct: 558 IGPRRRASLLKHFGGLVGLKAAGEAEIAKVEGINDALAARIYANLH 603 >gi|172036349|ref|YP_001802850.1| excinuclease ABC subunit C [Cyanothece sp. ATCC 51142] gi|171697803|gb|ACB50784.1| excinuclease ABC subunit C [Cyanothece sp. ATCC 51142] Length = 620 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 202/618 (32%), Positives = 309/618 (50%), Gaps = 28/618 (4%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTVTC 64 +P PGVY M D G +LY+GK+ L+ R++SY +H+ RI M+ Q+ NI F VT Sbjct: 18 LPHEPGVYLMRDYQGDILYIGKSKRLRSRVRSYFQPGQDHSPRIALMVQQVANIEFIVTD 77 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQGSYF 122 TE EAL LEAN+IK+ +P FN+LL+DDK +PY+ IT P ++ R + Y+ Sbjct: 78 TEAEALALEANLIKQHQPYFNVLLKDDKKYPYVCITWSEAYPRIFITRKRRLNHPRDRYY 137 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +T+ ++R F LR +F + RPCL + I RC G C G IS E Y + Sbjct: 138 GPYVDTHLLRQTLRLVKRVFPLRQRPRPLF--KDRPCLNYDIGRCPGVCQGLISPEDYHK 195 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR- 241 V + G L EK++ M A + +E A RD++ A+ + Sbjct: 196 IVEKVAMIFQGRTEELLEKLSAQMELAANQLKFEQAGQIRDQIKAVQGLGIDQKVTLPDD 255 Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D +L + N CIQ G+ G FF T S T IL L + Y Sbjct: 256 TISRDAIALAADDNYTCIQLFQIRAGRLVGRLGFFADTVSG-TPESILQRVLEEHYLQVD 314 Query: 299 ---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P IL+ ET +L K+ G KV I VP++ +K ++I NA Sbjct: 315 AVEIPSEILVQYPLPETDILANWLGKKKGKKVNIIVPQKQQKAELIRLVERNAGYELENT 374 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 + + L+D + L +P RIE YD SHI G +AV VV + K YR + Sbjct: 375 KRHAQQNLLALEDLAQLLDLSSLPHRIEGYDISHIQGSNAVASQVVFIDGVSAKQSYRHY 434 Query: 416 NLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 + ++ DD A + VL RRF E + +PD++++DGGK Sbjct: 435 KIKNPNITIGHSDDFASLAEVLSRRFRSYQNKSE-------TELLQLEDYPDLIMIDGGK 487 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 GQLS+ +L+ +N+ + +IS+AK + E F + + + + + ++++ Sbjct: 488 GQLSSVIKILENMNLVPPLQVISLAKKRE-----EIFLPGQSQPVTSHPEQAGVQLLRKV 542 Query: 534 RDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDEAHRFA+T HR++R KK+ +S LD+I G+G R++ LL F ++ I +S E L + Sbjct: 543 RDEAHRFAVTFHRQQRLKKSRHSRLDDIPGLGFQRQKQLLAHFHSIDYIREASIEKLQEV 602 Query: 593 EGISKKIACKIYNHFHKN 610 G+ +A +IY++FH N Sbjct: 603 SGVGPALAREIYDYFHPN 620 >gi|187776683|ref|ZP_02993156.1| hypothetical protein CLOSPO_00198 [Clostridium sporogenes ATCC 15579] gi|187775342|gb|EDU39144.1| hypothetical protein CLOSPO_00198 [Clostridium sporogenes ATCC 15579] Length = 618 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 190/618 (30%), Positives = 312/618 (50%), Gaps = 19/618 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 + +P+ PGVY M + G ++YVGKA L+ R++ Y + H+ ++ M+ I + Sbjct: 7 QLKNLPDKPGVYLMKNNLGEIIYVGKAKVLKNRVRQYFQKSQKHSEKVKAMVKNIEEFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE N+IK+ +P++NILL+DDK +P+I +T P + R + Sbjct: 67 IITDSEMEALILECNLIKKYRPKYNILLKDDKHYPFIKVTLSEDFPRVISTRKVTKDGSK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ ++V+ I +++TF +R+C ++ TRPCL QI C PC I+ Sbjct: 127 YFGPYVDGNSVKDIIELIKKTFPIRTCKKNIVEGAKPTRPCLNHQIGLCKAPCAQYINKS 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 Y E + + K LSG ++ E NM +A ++E A + RD++ + I Sbjct: 187 DYREIIDDVIKLLSGKQLDIVENFKINMEKAAENLEFEKAAMLRDKINIIEKIGEKQKII 246 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 ++ D SLY ++ C Q F G+ G F ++ ++ ++ ++S FL++FY Sbjct: 247 LNNFDNEDYISLYSDEKDTCFQVFFLRNGKIVGREHFIIEDTFDTNSSTLISNFLKEFYG 306 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351 I+ E+ LLE + K I VP +GEK+ I++ NA Sbjct: 307 GTAYIPKIIYVPAVEDRELLEQWLTLKKENKSTIKVPIKGEKKNILDLVQKNAKTTLENF 366 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 + L ++ + +LKD L P RIE +D S+I G +VG MVV + + Sbjct: 367 RLKYLQEKVLYDNVLKDLKNILNLKEEPIRIEAFDISNIQGFDSVGSMVVFEKGRAKPSD 426 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILD 470 YR+F N VK DD M+ +L RRF + + + F +PD++++D Sbjct: 427 YRRF--KINTVKGVDDYKSMKEILTRRFQHGLSEIKAIQDRKLNFSSGKFSVFPDLILMD 484 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ++ A VL N+ I + + K K + GE +++N ++ FI Sbjct: 485 GGKGQINIALEVLNSFNI--NIPVCGMVKDNKHRTRG---LIYNGEEIIINKYGSVMKFI 539 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DE HRFAI+ HR R K + +S LD+I IG RK+ LL +F ++ I +++ E L Sbjct: 540 TRVQDEVHRFAISYHRSLRGKNSFHSLLDDIPNIGEKRKKDLLFNFKSIDNIKKATYEEL 599 Query: 590 ASIEGISKKIACKIYNHF 607 SI + KK + F Sbjct: 600 LSIPSMDKKSVESVLKFF 617 >gi|332524205|ref|ZP_08400431.1| excinuclease ABC subunit C [Rubrivivax benzoatilyticus JA2] gi|332107540|gb|EGJ08764.1| excinuclease ABC subunit C [Rubrivivax benzoatilyticus JA2] Length = 678 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 212/648 (32%), Positives = 322/648 (49%), Gaps = 50/648 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PGVY+ D AG VLYVGKA NL+KR+ SY H ++ RI M+++I + TV T Sbjct: 36 LPGLPGVYRYFDAAGGVLYVGKARNLKKRVSSYFHKDHGGTRIGAMVARIARLETTVVRT 95 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKI-----------PALYKHRDS 114 E EALLLE N+IK L P+FNIL RDDKS+PY+ IT + R + Sbjct: 96 EAEALLLENNLIKTLNPKFNILFRDDKSYPYLKITGTRSADGAGALTAASCARVAYFRGA 155 Query: 115 STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE 174 + YFGP+ + AV++TI +Q+ F LR+C D+VF +R+RPCLL+QI+RCSGPC G Sbjct: 156 VDRKHRYFGPYPNAWAVKETIQLIQKVFRLRTCEDTVFANRSRPCLLYQIQRCSGPCVGL 215 Query: 175 ISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234 +S + Y VH+A++FL G + + M +YE A RDR+ +LS + + Sbjct: 216 VSKDDYARDVHDAERFLLGEQQEVVADLQAQMMAFAEAYEYEKAAAVRDRIGSLSRVLHQ 275 Query: 235 NDSIYN-------RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE-------- 279 + +D ++ AC+ ++ G +F + Sbjct: 276 QAMEASSLSAGDKDVDILAVRVAGGRACVNLAMVRGSRHLGDRAYFPTHVDDGAALSATE 335 Query: 280 --------STNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITV 331 S +L F+ Q Y + P ++ S + + + + G +V+ T Sbjct: 336 ADERADAPSPETAVLEAFIAQHYLGQAVPPQLVTSHPVDPELI--ETLSEAAGVRVRATQ 393 Query: 332 PKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPK--RIEIYDNSH 389 + +KR +E A A + + L+ E S + + + L P RIE +D SH Sbjct: 394 QPREQKRIWLELAEKGAELALARLLAEEGSQRERTRALVEALELDVEPDALRIECFDISH 453 Query: 390 IMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEEN- 448 G + VV + QYR+FN+ V DD A MR VL RR+++L + Sbjct: 454 TAGEATQASCVVYEAHAMQSAQYRRFNIEG--VTGGDDYAAMRQVLTRRYARLAEARRQD 511 Query: 449 -----LNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR 503 + + PD+V++DGG+GQ+S A+ V +L + I I+ + KG R Sbjct: 512 AQDGAADEAAAPAKKGTARLPDLVLVDGGRGQVSMAREVFTELGLPLSI-IVGVEKGEGR 570 Query: 504 SAGMEKFFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--SPLDEI 560 G+E+ G + L L + ++RDEAHRFAIT R RR S L++I Sbjct: 571 KVGLEELVFADGREKVYLGHDSAALMLVAQIRDEAHRFAITGMRARRASVRTGGSKLEDI 630 Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 G+GP ++ LLQ FG V+ ++ +S E LAS++GIS +A +IY H Sbjct: 631 PGVGPRKRSRLLQRFGGVRGVAAASVEDLASVDGISHDLAEEIYRALH 678 >gi|315641292|ref|ZP_07896369.1| excision endonuclease subunit UvrC [Enterococcus italicus DSM 15952] gi|315483059|gb|EFU73578.1| excision endonuclease subunit UvrC [Enterococcus italicus DSM 15952] Length = 598 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 176/615 (28%), Positives = 297/615 (48%), Gaps = 41/615 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ G Y M D G ++YVGKA L+ R++SY ++ T + ++S+I + + VT + Sbjct: 12 LPDQSGCYLMKDKNGTIIYVGKAKVLKNRVRSYFTGSHDT-KTERLVSEIVDFEYIVTES 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+I++ P++NI+L+DD S+P+I IT+ P L R + YFGP+ Sbjct: 71 NIEALVLEINLIQQNNPKYNIMLKDDTSYPFIKITN-EAYPRLLITRKVLKDKAFYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 V A +T L R F R C CL + + +C PC +I E Y + Sbjct: 130 PDVRAANETKKLLDRLFPFRKCKVLPKD----VCLYYHMGQCLAPCVFDIPKETYTKMAI 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E ++FL+GG+ +++ + + M A + ++E A +RD++ A+ + Sbjct: 186 EIRRFLNGGHAQIQKMLTQRMEDAAERLEFEKAAEYRDQIQAIETVMTRQKMTQTDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F C+Q F G+ +++ + P+ Sbjct: 246 DVFGYDILNGWMCVQVFFIRQGKVIERDVSMFPFYNDAPEDFLTFIGQFYQENAHFIPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358 +L+ + ++ S+ I + IT P++GEK+K+++ A NA Sbjct: 306 VLIPADIDQESVKAIVPTR-------ITQPQRGEKKKLVDLAGKNAKISLTEKFELIQRK 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E + + +P P RIE +DNS+IMG + V MVV + K +YRK+ + Sbjct: 359 EERTIGAIDKLGQAMNIP-KPIRIEAFDNSNIMGTNPVSAMVVFVDGKPAKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V DD A MR V+ RR+++++K PD++I+DGGKGQ+ Sbjct: 418 T--VVGPDDYASMREVIYRRYARVLKEN--------------LPLPDLIIIDGGKGQVDV 461 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ VL + I I +AK + E F + + L + +QR++DE H Sbjct: 462 AKDVLDN-QLGLDIPIAGLAKNDQHKTS-ELLFGSPLQVIPLPRNSAEFFLLQRIQDEVH 519 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ R K ++ S LD+I G+GP RK+ LL+ F ++K I ++ E L + G+ + Sbjct: 520 RFAITFHRQLRSKNSFASRLDDIAGLGPKRKKELLKQFKSLKKIEEATIEELQQV-GLPR 578 Query: 598 KIACKIYNHFHKNTS 612 +A +Y H+ + Sbjct: 579 PVAETLYQKLHEQKA 593 >gi|291460316|ref|ZP_06599706.1| excinuclease ABC subunit C [Oribacterium sp. oral taxon 078 str. F0262] gi|291417071|gb|EFE90790.1| excinuclease ABC subunit C [Oribacterium sp. oral taxon 078 str. F0262] Length = 632 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 197/624 (31%), Positives = 316/624 (50%), Gaps = 19/624 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M ++YVGKA L+ R+K Y + + +I M+S + + Sbjct: 14 ELKKLPALPGVYLMHGPKDEIIYVGKAKVLKNRVKQYFQKSYRKSVKIQQMVSLVERFEY 73 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V +E+EAL+LE+N+IK KPR+N LL+DDK++PYI + P + R + Sbjct: 74 IVVDSELEALILESNLIKEYKPRYNTLLKDDKNYPYIAFSLGELFPRVRAVRRRKNDRSR 133 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT--RPCLLFQIKRCSGPCTGEISSE 178 YFGP+AS++ V + I L+++F +R+C + RPCL + + +C GPC G S E Sbjct: 134 YFGPYASMEQVNEVIELLRKSFRIRNCNKVFTEDKRLPRPCLYYDLHQCDGPCIGRQSRE 193 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y+ V A F++G ++ ++++R M++A+ D+E+A+ RD + ++ +Q+ Sbjct: 194 DYLAQVSRALDFMNGKYEDIVKELSRRMSRASDNLDFETAMELRDLIRSIEAVQSRQKIT 253 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D + + IQ F G+ G F+ D E ++A++LS FL+Q+Y Sbjct: 254 AYDGEDRDIIGMRREGSDCVIQIFFVRDGKIIGRDHQFIDIDPEESDAELLSGFLKQYYN 313 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HR 350 P P I + E E LL G KV I P G K K++E A++NA +R Sbjct: 314 GTPFIPREIFVQTELPEAELLSAWLSGMKGRKVNIRTPLIGGKEKLVELAVMNAGILMNR 373 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E + K + P+RIE YD S+ G VG MVV + N Sbjct: 374 YREKYREEEKKLGRAVLTLQKLLEMEKPPRRIESYDISNTSGALNVGSMVVYIDGKAKPN 433 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVIL 469 YRKF + V+ DD A MR +L RRFS ++ E+N SF +P+++++ Sbjct: 434 DYRKFRIRS--VQGPDDYASMREMLTRRFSHGLREMEQNAERGRNNALGSFSVFPELILM 491 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ+S + VL +L + IT+ + K + +G L L + Sbjct: 492 DGGKGQVSVCEEVLSELGIS-SITVCGMVKDEHHRTRA---LLYQGRELPLPESGDVFRL 547 Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 + R++DE HRFAI HR R+K S LDEI GIG +RK+ L++ F + I + ++ Sbjct: 548 LTRIQDEVHRFAIEYHRSLREKTQIRSLLDEIPGIGAVRKKALMKEFKDIDHIKTADIKS 607 Query: 589 LASIEGISKKIACKIYNHFHKNTS 612 LA+ + A ++Y F ++ Sbjct: 608 LAACPSMDIHAAERVYRFFRGEST 631 >gi|229918339|ref|YP_002886985.1| excinuclease ABC, C subunit [Exiguobacterium sp. AT1b] gi|229469768|gb|ACQ71540.1| excinuclease ABC, C subunit [Exiguobacterium sp. AT1b] Length = 594 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 184/617 (29%), Positives = 305/617 (49%), Gaps = 45/617 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y + G V+YVGKA NL+ R++SY H + ++++I + + VT + Sbjct: 14 LPDEPGCYLHKNEYGEVIYVGKAKNLKNRVRSYFTGA-HDIKTMRLVAEIRDFEYIVTAS 72 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E+EALLLE +IK+ P++NI L+DDK++PYI IT+ P L R G YFGP+ Sbjct: 73 ELEALLLEMTLIKKHDPKYNIRLKDDKTYPYIKITN-EPYPRLLTTRKLKKDGGHYFGPY 131 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + A +T L + + LR C + CL + I +C GPC + ++ E V Sbjct: 132 PNAYAANETKRLLDKLYPLRKCQPMP----KKLCLYYHIGQCLGPCELAVDTDSQKEIVQ 187 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRM 242 E ++FL+G K+ M +A +E A RD++ A+ I N + Sbjct: 188 EIRRFLNGETSETLTKLNVEMGRAAEDMQFERAAELRDQIRAVESIMNKQNMITADPTAR 247 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F ++ C+Q + G+ E + + L F+ QFY P+ Sbjct: 248 DVFGYTLDRGWMCVQVFYMRGGKMIERDVSLFPMHGEPS--EELESFIVQFYEQNVVPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 IL+ E L + K + PK+G K+++++ A NA + Sbjct: 306 ILVPETVRLDLLNDAIGTK-------VMQPKRGAKKQLLDLATKNATIALNEKFELLARD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E + +++ + +P++ R++I DN++I G AV +VV + +K +YRK+ + Sbjct: 359 EERTLLAMRELGEAIGIPNLS-RVDIIDNANIQGADAVSALVVFEDGKPLKKEYRKYKIR 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RRF +L+ ++ L PD++++DGG GQL+A Sbjct: 418 T--VQGPDDYETMREVVRRRFRRLLTEDKRL--------------PDLLLIDGGIGQLNA 461 Query: 479 AQG-VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A + + ++ + + S+ K R + F + G + L+ R Y +QR++DE Sbjct: 462 ALDVIQNEFGLD--LPVGSL-KKDDRHRTSQLLFGEGGGVVELHPRSSAFYLLQRMQDEV 518 Query: 538 HRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR R KK S LDEI G+GP R++ L++ FG++K I +S E L G+ Sbjct: 519 HRFAITFHRSLRTKKMTKSILDEIPGVGPKRRQQLIRHFGSMKQIRLASLEQLKEA-GLP 577 Query: 597 KKIACKIYNHFHKNTSH 613 +K+A + + H+ T Sbjct: 578 EKLAETVLQYVHEETDE 594 >gi|119483248|ref|ZP_01618662.1| Excinuclease ABC, C subunit [Lyngbya sp. PCC 8106] gi|119458015|gb|EAW39137.1| Excinuclease ABC, C subunit [Lyngbya sp. PCC 8106] Length = 649 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 197/638 (30%), Positives = 300/638 (47%), Gaps = 45/638 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 ++P PGVY M D + +LY+GK+ L+ R++SY N H+ RI MI Q+ I F VT Sbjct: 22 EIPSVPGVYLMRDHSDNILYIGKSKKLRSRVRSYFRDYNRHSPRIAMMIQQVAEIEFIVT 81 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQGSY 121 TE EAL LEAN+IK+ +P FN+LL+DDK +PY+ IT + P ++ R + Y Sbjct: 82 DTEAEALALEANLIKQHQPYFNVLLKDDKKYPYLCITWSEEYPRIFITRKRRLGKSKDRY 141 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GP+ + T++ +++ F LR +F + RPCL + I RC G C IS E Y Sbjct: 142 YGPYVDTRLLRSTLHLVKQIFPLRQRPKPLF--KDRPCLNYDIGRCPGVCQQFISPEDYH 199 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + + + G L + + M A ++E A RD++ + + + Sbjct: 200 QTMQKVAMIFQGRTGELLNSLTQQMATAAENLNFEIAAKIRDQIQGVQSLNDDQKVSLPD 259 Query: 242 ----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE-------------STNAQ 284 D +L N ACIQ G+ G F + + T ++ Sbjct: 260 DRVSRDAIALAANDKQACIQLFQIRAGKLVGRLGFQAEVEQFQLEGLENDLNATLETESE 319 Query: 285 IL---SYFLRQFYTDKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKR 338 L Y P IL+ E E S+L + G KV I P++ K Sbjct: 320 FGAILQRVLEDHYQTVDAVEIPGEILVQYELPEESILANWLSEYKGRKVTIINPQRQTKA 379 Query: 339 KIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGC 398 ++IE NA + + L+D + LP IP RIE YD SHI G AV Sbjct: 380 ELIELVERNAGYELERVQKFSDRNNQALQDLAEILDLPDIPHRIEGYDISHIQGSDAVAS 439 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKT--QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQ 456 V+ + QYR + + +V DD A + V+ RRF Sbjct: 440 KVMFIDGLPANQQYRHYKIRNPEVHAGRSDDFASLAEVIGRRFRDY---------PTLTP 490 Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE 516 E PD++++DGGKGQLSA VL +LN+ + ++S+AK + E F + Sbjct: 491 EKIAADKPDLIMIDGGKGQLSAVVKVLSELNLLEDLRVVSLAKQRE-----EIFLPGESF 545 Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSF 575 L + P + ++RLRDEAHRFA++ HR++R + S LDEI G+G R++ LL F Sbjct: 546 PLETDSEQPGVQLLRRLRDEAHRFAVSFHRQKRSQRLKRSRLDEIPGLGYRRQKQLLAHF 605 Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 ++ + ++PE + + GI K+A IYN+FH + Sbjct: 606 RSIDYLRIATPEQITEVPGIGFKLAQHIYNYFHPTSDE 643 >gi|164686654|ref|ZP_02210682.1| hypothetical protein CLOBAR_00249 [Clostridium bartlettii DSM 16795] gi|164604044|gb|EDQ97509.1| hypothetical protein CLOBAR_00249 [Clostridium bartlettii DSM 16795] Length = 604 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 204/624 (32%), Positives = 322/624 (51%), Gaps = 40/624 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 + +PE PGVY M + +++YVGKA +L+ R++ Y S+ NH+ ++ M+S I + + Sbjct: 7 QLKLLPEEPGVYLMKNKNDKIIYVGKAVSLKNRVRQYFQSSKNHSSKVKSMVSNIASFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE N+IK+ +P++N+LLRDDK++PYI +T P + K R + Sbjct: 67 IITDSELEALILECNLIKQYRPKYNVLLRDDKTYPYIKVTVNEDFPRIMKVRRVLKDKAK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISS 177 YFGP+ +V AV T+ ++ + +R+C + R+ RPCL + IK+C GPCTG +S Sbjct: 127 YFGPYTNVGAVNDTLEIIRNIYPIRNCNVDIPKAIRNSARPCLNYHIKKCVGPCTGNVSK 186 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E+Y + + E FLSG L E + MN ++ +E A ++RD++ L I Sbjct: 187 EEYRKMIDEIILFLSGKEETLIEILKEKMNSCAMEFKFEDAAMYRDKIKNLEEIMEKQKI 246 Query: 238 IYN----RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 + D +L + AC+Q F + G F L+ S + IL F++QF Sbjct: 247 DASNSDVNQDVIALARTEEEACVQVFFMRNSKIIGREHFILEGVEGSKSDSILGSFVKQF 306 Query: 294 YTDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS- 351 Y ++ P+ I++ EE E+ +LE + G KV IT+P++GEK+ + NA Sbjct: 307 YMEQEYIPKEIIIDEELEDRYILEQWLSDKKGSKVTITIPQKGEKKGLALMVRKNAMEYL 366 Query: 352 ---HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 L T+ L +PKRIE YD S+I G ++G MVV + Sbjct: 367 NKFSHLNKQKYEKSIGALTQLTELLKLETMPKRIEAYDISNIQGVDSIGSMVVFTDGKKD 426 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 K +YR+F + + DD M +L RR + PD+++ Sbjct: 427 KKEYRRFKIKT--IVGPDDYGSMAEILSRRVKH-------------------KNLPDLIL 465 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 LDGGKGQ+SA Q VL + N+ +I + + K K V K + +VL+ + Sbjct: 466 LDGGKGQVSAVQNVLDQNNL--QIPLWGMFKDDKHRTKG---LVNKSQEIVLDRTTNLYR 520 Query: 529 FIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 F+ +++E H +AIT HR RKK+ S LD+I GIG RK+ LL F ++ I ++ E Sbjct: 521 FVASIQEEVHNYAITYHRSLRKKSLTKSVLDDIPGIGEKRKKNLLSHFKNIESIKAATFE 580 Query: 588 TLASIEGISKKIACKIYNHFHKNT 611 L +E I+K A IYN+F Sbjct: 581 QLLEVESINKTAAENIYNYFKSEE 604 >gi|56964432|ref|YP_176163.1| excinuclease ABC subunit C [Bacillus clausii KSM-K16] gi|81365726|sp|Q5WEK8|UVRC_BACSK RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|56910675|dbj|BAD65202.1| excinuclease ABC subunit C UrvC [Bacillus clausii KSM-K16] Length = 594 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 177/617 (28%), Positives = 298/617 (48%), Gaps = 42/617 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY ++ + + ++ +I + + VT + Sbjct: 12 LPDKPGCYLMKDRQGTIIYVGKAKVLKNRVRSYFTGSHDS-KTQRLVGEICDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE +IK+ P++N+LL+DDK++PYI IT+ + P L R YFGP+ Sbjct: 71 NIEALILELTLIKKHDPKYNVLLKDDKTYPYIKITN-ERHPRLLITRKVKKDGAKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + A +T L R + LR C + CL + I +C PC E+S E V+ Sbjct: 130 PNAGAATETKKLLDRLYPLRKCR----KMPDSVCLYYHIGQCLAPCVYEVSEETNQTMVN 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 E KFL G+ ++KE++ M +A D+E A RD +A + + + Sbjct: 186 EITKFLKNGHSDIKEQLRERMEKAAEDLDFERAKELRDTIAQMEKVMEKQKMAFADKTDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F ++K C+Q F G+ E++ + + P+ Sbjct: 246 DVFGFSYDKGWMCVQVFFIRQGRLIERDVSIFPFYQEASEELLTFIARFYLEKNHIKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 I ++E ++ L E+ + +T PK+G+K+ +++ A NA + Sbjct: 306 IFVAESVDKQLLKELLETR-------VTQPKRGQKKALLDLAEENAALALKEKFSLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E ++ + + RIE +DNS+I G V MVV + +YRK+ + Sbjct: 359 EQRTVKAVERLGEAIGINAP-YRIEAFDNSNIQGVDPVSAMVVFVNGVPQRKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+ +L+K + L PD++++DGG GQ++A Sbjct: 418 T--VEGPDDYGSMREVVRRRYVRLLKEKRPL--------------PDLIVIDGGAGQIAA 461 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ V++ + I + +AK K + L Y +QR++DE H Sbjct: 462 AKEVIED-ELGQAIPVCGLAKDDKHRTSQ-LLMGSPPVVVPLQRDSHEFYLLQRIQDEVH 519 Query: 539 RFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ R K+ S LD+I G+G R++ LL++FG+VK I +S E L+ + Sbjct: 520 RFAITFHRQTRAKSFLQSALDDIPGVGEKRRKALLKTFGSVKKIKEASIEDLSK--HVPT 577 Query: 598 KIACKIYNHFHKNTSHT 614 K+A I++ +KN + Sbjct: 578 KLAETIHHTLNKNKPNA 594 >gi|156742924|ref|YP_001433053.1| excinuclease ABC subunit C [Roseiflexus castenholzii DSM 13941] gi|156234252|gb|ABU59035.1| excinuclease ABC, C subunit [Roseiflexus castenholzii DSM 13941] Length = 665 Score = 490 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 189/648 (29%), Positives = 320/648 (49%), Gaps = 50/648 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVTC 64 +P PGVY + G+++Y+GK+ L+ R++SY + + + +++QI + + VT Sbjct: 22 VPLAPGVYLWKNAQGKIIYIGKSKRLRDRMRSYFARTDDPYGKTARLVAQIADFQVIVTS 81 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGSYFG 123 E+EALLLE +IK+ +PRFN+LL+DDKS+PYI +T P + R+ YFG Sbjct: 82 NELEALLLEMTLIKQHRPRFNVLLKDDKSYPYIKVTLHEPWPRIVATRNPRWEEGARYFG 141 Query: 124 PFASVDAVEKTINSLQRTFFL------RSCADSVFRHRTRPCLLFQIKRCSGPCTGE-IS 176 P++S AV +T++ L R F + R +PCL + IKRC GPC ++ Sbjct: 142 PYSSAGAVYRTLDQLNRLFAFRPPSRCPDDKFNRHRRLGKPCLYYDIKRCLGPCVPGLVN 201 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 Y V +FL G + + + + R M +A + D+E A RD + + I Sbjct: 202 QNDYRATVESVCRFLEGKSDLVAKILRRQMEEAAERLDFERAARLRDSIRDIELIGQRQQ 261 Query: 237 SIYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 + + D L + +A +Q G+ +F L+ + +L+ FL QF Sbjct: 262 VLRHDDADQDVIGLAREEGMAVVQVLRIRAGKLISAESFPLQNAEGERDESLLASFLTQF 321 Query: 294 YT-DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS- 351 Y P +LL ++ +++E ++ G KV + P++GEKR+++E A NA + Sbjct: 322 YDAAAELPATLLLPAPLDDLAIIEQWLAQKAGRKVALHTPQRGEKRRLVELAEQNARQKL 381 Query: 352 ---HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 Q L++E L + L +P RIE +D S+ G +VG MVV Sbjct: 382 DELRLQWLNSEQRAVAGLTEVRDLLGLSALPTRIECFDVSNTQGSHSVGAMVVFEHGEPK 441 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLI------------------------- 443 K++YRKF + V+ +D A ++ VL RRF + Sbjct: 442 KSRYRKFRIKT--VEGANDVASIQEVLRRRFRRAAMVIGEEEQPADERVVNGQTDAAEQE 499 Query: 444 ---KNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500 K + + +++ ++ PD++++DGG GQ++ A VL+ L E I ++ + KG Sbjct: 500 DGEKTDAPGSQSDLERQETWAELPDLILIDGGIGQVNGALHVLRDLCFE-HIPVVGVVKG 558 Query: 501 PKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDE 559 P R + + +VL L I+R+ +EA RFA HRK R K+ S L+E Sbjct: 559 PNRDR-FDLLIPGASDLIVLERESAALRLIRRIDEEADRFAKDYHRKLRSKSATASRLEE 617 Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I GIGP R++LLL+ FG++ I ++ + +A++ G+++K A ++ + Sbjct: 618 IPGIGPKRRQLLLKRFGSLDGIRNATVDEIAAVPGMTRKAAEELKSLL 665 >gi|315225527|ref|ZP_07867337.1| excision endonuclease subunit UvrC [Capnocytophaga ochracea F0287] gi|314944471|gb|EFS96510.1| excision endonuclease subunit UvrC [Capnocytophaga ochracea F0287] Length = 596 Score = 490 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 182/626 (29%), Positives = 301/626 (48%), Gaps = 53/626 (8%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + +P PGVYQ D ++YVGKA NL+KR+ SY + + ++ +I I Sbjct: 7 IQLQTLPTNPGVYQFYDATDTLIYVGKAVNLKKRVSSYFQKEHDNAKTRILVRKIVRIEH 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE +ALLLE N+IK+ +PR+NILL+DDKS+P+I + K + P ++ R Sbjct: 67 IVVATESDALLLENNLIKKYQPRYNILLKDDKSYPWICV-KKERFPRVFSTRRVVKDGSL 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCAD-----SVFRHRTRPCLLFQIKRCSGPCTGEI 175 YFGP+ S+ V ++ ++ F LR+C ++ H+ + CL + +K C GPC G Sbjct: 126 YFGPYTSMKTVHTLLDLIKELFALRNCNYDLSPQNIANHKFKVCLEYHLKNCKGPCEGYQ 185 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 + Y + + + + L G + + M + +E A + + ++ +L + Q + Sbjct: 186 NEADYNQNIQQIVEILKGNFKDALHQFKEEMMALASEMRFEEAHLIKQKIQSLENYQAKS 245 Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 + +D FS+ ++ + +G T +K E T+ ++L Y + Sbjct: 246 TIVSSKISNVDVFSIVSDEEYGYVNFLQVAYGAIVRAHTLEIKKKLEETDRELLEYAIID 305 Query: 293 FYTDKPC-PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 + I++ E + ++ T+PK GEK+++++ ++ NA Sbjct: 306 IRERFFSNSKEIIVPFEVTLSE------------GLQATIPKAGEKKQLLDLSMRNAKHF 353 Query: 352 HTQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405 + E +L + L P IE +DNS+I G + V VV Sbjct: 354 CQDRFKQEKIVDPERHTNRVLTQMQRDLHLSVPPVHIECFDNSNIQGTNPVSACVVFKNA 413 Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465 K YR FN+ V+ +D A M + RR+ +L+ E+ L P Sbjct: 414 KPSKKDYRHFNVKT--VEGPNDFASMEEAVYRRYRRLLDEEQPL--------------PQ 457 Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525 ++++DGGKGQLS+A L++L + +I II IAK + E +F + L L+ R Sbjct: 458 LIVIDGGKGQLSSALKALEQLELRGKIAIIGIAKRLE-----EIYFPEDSIPLYLDKRSE 512 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 L IQ+LRDEAHRF IT HRK+R K+ S LD + GIG K +LLQ F +VK + + Sbjct: 513 TLRVIQQLRDEAHRFGITFHRKKRSKSAIVSELDGVEGIGEKTKEVLLQHFKSVKRVREA 572 Query: 585 SPETLASIEGISKKIACKIYNHFHKN 610 + E L + G K K+Y +F + Sbjct: 573 TLEELTQVAGFRGK---KVYEYFQSH 595 >gi|148657260|ref|YP_001277465.1| excinuclease ABC subunit C [Roseiflexus sp. RS-1] gi|148569370|gb|ABQ91515.1| Excinuclease ABC subunit C [Roseiflexus sp. RS-1] Length = 669 Score = 490 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 192/652 (29%), Positives = 323/652 (49%), Gaps = 54/652 (8%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVTC 64 +P PGVY + G+++YVGK+ L+ R++SY + + + ++ QI + + VT Sbjct: 22 VPLAPGVYLWKNAQGKIIYVGKSKRLRDRMRSYFNQTGDPYGKTARLVEQIADFQVIVTS 81 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGSYFG 123 TE+EALLLE +IK+ +PRFN+LL+DDKS+PYI +T P ++ R+ YFG Sbjct: 82 TELEALLLEMTLIKQHRPRFNVLLKDDKSYPYIKVTLHETWPRIFATRNPRWEEGARYFG 141 Query: 124 PFASVDAVEKTINSLQRTFFL------RSCADSVFRHRTRPCLLFQIKRCSGPCTGE-IS 176 P++S AV +T++ L R F + R +PCL + IKRC GPC ++ Sbjct: 142 PYSSAGAVYRTLDQLNRLFAFRPPSRCPDDKFNRHRRMGKPCLYYDIKRCLGPCVPGLVN 201 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 E+Y + +FL G + + + + R M +A + D+E A RD + + I Sbjct: 202 QEEYRATIESVCRFLEGKSDLVVKTLRRQMEEAAERLDFERAARLRDSIRDIELISQRQQ 261 Query: 237 SIYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 + + D L + +A +Q G+ +F L+ N +L+ FL QF Sbjct: 262 VLRHDDADQDVIGLAREEGMAVVQVLCIRAGKLISAESFPLQNAEGERNEDLLASFLTQF 321 Query: 294 YT-DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS- 351 Y P +LL +E +++E ++ G K+ + P++GEKR+++E A NA + Sbjct: 322 YDTAAELPAALLLPMPLDEPAVIEQWLAQKAGRKITLHTPQRGEKRRLVELAEQNARQKL 381 Query: 352 ---HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 Q L++E L + L +P RIE +D S+I G AVG MVV Sbjct: 382 EELRLQWLNSEQRAVAGLSEVRDLLGLSALPTRIECFDVSNIQGSHAVGAMVVFERGEPK 441 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLI------------------------- 443 K++YRKF + V+ +D A ++ +L RRF + Sbjct: 442 KSRYRKFRIKT--VQGANDVASIQEILRRRFRRAAMVIGEEEQQSEAQRMNGSVNGPAEA 499 Query: 444 -------KNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIIS 496 K + + +++ ++ PD++++DGG GQL+ A L+ L + I ++ Sbjct: 500 DDQEEAEKTDTPGSHADIERQETWAELPDLILIDGGVGQLNGAIQALRDLRFD-HIPVVG 558 Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYS 555 + KGP R + + +VL L I+ + +EA RFA HRK R K+ S Sbjct: 559 VVKGPNRDR-FDLLLPGASDVIVLERDSAALRLIRMIDEEADRFAKDYHRKLRSKSATSS 617 Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L+EI GIGP R++LLL+ FG+++ I ++ + LA++ G+++K A ++ + Sbjct: 618 RLEEIPGIGPKRRQLLLKRFGSLEGIRNATVDELAAVPGMTRKAAEELKSML 669 >gi|213963476|ref|ZP_03391730.1| excinuclease ABC, C subunit [Capnocytophaga sputigena Capno] gi|213953884|gb|EEB65212.1| excinuclease ABC, C subunit [Capnocytophaga sputigena Capno] Length = 593 Score = 490 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 186/624 (29%), Positives = 299/624 (47%), Gaps = 53/624 (8%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + +P PGVYQ D + ++YVGKA NL+KR+ SY + + ++ +I I Sbjct: 5 IQLQTLPNNPGVYQFYDASDTLIYVGKAVNLKKRVSSYFQKEHDNAKTRILVRKIVRIEH 64 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE +ALLLE N+IK+ +PR+NILL+DDKS+P+I + K + P ++ R Sbjct: 65 IVVATESDALLLENNLIKKYQPRYNILLKDDKSYPWICV-KKERFPRVFSTRRVVKDGSL 123 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCAD-----SVFRHRTRPCLLFQIKRCSGPCTGEI 175 YFGP+ S+ V ++ ++ F LR+C +V H+ + CL + +K C GPC G Sbjct: 124 YFGPYTSMKTVHTLLDLIKELFPLRNCNYDLSPQNVANHKFKVCLEYHLKNCKGPCEGYQ 183 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 S + Y + + + L G + M + +E A + + ++ +L + Q + Sbjct: 184 SEQDYNNNIQQIVEILKGNFKEALKHFKEEMMALAAEMRFEEAHLIKQKIQSLENYQAKS 243 Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 +D FS+ ++ + +G T +K + T+ ++L Y + Sbjct: 244 TIVSSKITNVDVFSIVSDEEYGYVNFLQVAYGAIVRAHTLEIKKKLDETDRELLEYAIID 303 Query: 293 FYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 + I++ + + ++ T+PK GEK++++E +L NA Sbjct: 304 IRERFFSVSKEIIVPFDVTLSD------------GLQATIPKAGEKKQLLELSLRNAKHF 351 Query: 352 HTQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405 + E IL + L P IE +DNS+I G + V VV Sbjct: 352 RQDRFKQEKIVDPERHTNRILTQMQRDLHLSVPPVHIECFDNSNIQGTNPVSACVVFKNA 411 Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465 K YR FN+ V+ +D A M + RR+ +L+ ++ L P Sbjct: 412 KPSKKDYRHFNVKT--VEGPNDFASMEEAVYRRYRRLLDEQQPL--------------PQ 455 Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525 ++I+DGGKGQLS+A L++L + +I II IAK + E +F + L L+ R Sbjct: 456 LIIIDGGKGQLSSALKALEQLELRGKIAIIGIAKRLE-----EIYFPEDSVPLYLDKRSE 510 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 L IQ+LRDEAHRF IT HR++R K+ S LD + GIG K LLQ F +VK I + Sbjct: 511 TLRVIQQLRDEAHRFGITFHRQKRSKSAIVSELDGVGGIGDKTKETLLQHFKSVKRIREA 570 Query: 585 SPETLASIEGISKKIACKIYNHFH 608 + E L + G K K+Y +FH Sbjct: 571 TLEELTKVVGFRGK---KVYEYFH 591 >gi|56752158|ref|YP_172859.1| excinuclease ABC subunit C [Synechococcus elongatus PCC 6301] gi|81300754|ref|YP_400962.1| excinuclease ABC subunit C [Synechococcus elongatus PCC 7942] gi|81561473|sp|Q5N031|UVRC_SYNP6 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|119367852|sp|Q31LU4|UVRC_SYNE7 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|56687117|dbj|BAD80339.1| excinuclease ABC subunit C [Synechococcus elongatus PCC 6301] gi|81169635|gb|ABB57975.1| Excinuclease ABC subunit C [Synechococcus elongatus PCC 7942] Length = 643 Score = 490 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 193/629 (30%), Positives = 304/629 (48%), Gaps = 29/629 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 ++P PGVY M D + R+LY+GK+ L+ R++SY RI M+ Q+ I VT Sbjct: 22 ELPAEPGVYFMRDASDRILYIGKSKKLRSRVRSYFRDLERLNPRINLMVRQVCEIEIIVT 81 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQGSY 121 TE EAL LEAN+IK+ +P FN+LL+DDK +PY+ IT P ++ R + Y Sbjct: 82 DTEAEALALEANLIKQHQPHFNVLLKDDKKYPYLCITWSDDYPRIFITRKRRLGNSRDRY 141 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GP+ + T+ ++R F LR +F+ RT CL + I RC G C I + Y Sbjct: 142 YGPYVDTRLLRHTLFLVKRLFPLRQRPQPLFKDRT--CLNYDIGRCPGVCQSLIRPDDYR 199 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + + + G + L E + M QA ++E A RD++ L + Sbjct: 200 KTLQKVAMIFQGRSSELVELLEAQMLQAAENLEFEKAAKIRDQIRGLEGLGAEQKVQLPD 259 Query: 242 ----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294 D +L ++ ACIQ G+ G F S + A I L + Y Sbjct: 260 DRISRDAIALAMDEQHACIQLFQIRAGKLVGRLGFVADAQSG-SAAAIAQRVLEEHYASV 318 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P+ +L+ + E LLE+ ++ G KV+I P++ K +I NA + Sbjct: 319 DSVEIPQEVLVQHDLPEAELLEVWLSERRGRKVEILSPQRQIKADLIAMVERNAEYELAR 378 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + H L D LP +P+RIE YD SHI G AV VV + K YR+ Sbjct: 379 TQQSAERHTASLIDLADLLDLPELPRRIEGYDISHIQGSDAVASQVVFIDGLPAKQHYRR 438 Query: 415 FNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENLNFHPKK--------QEYSFPSWP 464 + + +V+ D A + VL RRF + + + + +P Sbjct: 439 YKIRNPEVRAGHSDDFASLAEVLHRRFRKFAEAKARGESLAPSEQRQGSLLRPDDLADFP 498 Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524 D+V++DGGKGQLSA VL+ LN+ + + S+AK + E F + L + Sbjct: 499 DLVMIDGGKGQLSAVVEVLRNLNLLEDVKLCSLAKKRE-----EIFLPGASDPLPTDAEQ 553 Query: 525 PILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583 P + ++RLRDEAHRFA++ HR++R ++ S LD+I G+G R++ LL F ++ + Sbjct: 554 PGVQLLRRLRDEAHRFAVSFHRQKRTERMRRSRLDDIPGLGHKRQKELLAHFRSIDYLRL 613 Query: 584 SSPETLASIEGISKKIACKIYNHFHKNTS 612 ++PE +A + GI +A +I+ +FH + + Sbjct: 614 ATPEQIAEVPGIGAVLAQQIWGYFHPSET 642 >gi|256820113|ref|YP_003141392.1| excinuclease ABC subunit C [Capnocytophaga ochracea DSM 7271] gi|256581696|gb|ACU92831.1| excinuclease ABC, C subunit [Capnocytophaga ochracea DSM 7271] Length = 596 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 184/626 (29%), Positives = 301/626 (48%), Gaps = 53/626 (8%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + +P PGVYQ D ++YVGKA NL+KR+ SY + + + ++ +I I Sbjct: 7 IQLQTLPNNPGVYQFYDATDTLIYVGKAVNLKKRVSSYFQKEHDSAKTRILVRKIVRIEH 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE +ALLLE N+IK+ +PR+NILL+DDKS+P+I + K + P ++ R Sbjct: 67 IVVATESDALLLENNLIKKYQPRYNILLKDDKSYPWICV-KKERFPRVFSTRRVVKDGSL 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCAD-----SVFRHRTRPCLLFQIKRCSGPCTGEI 175 YFGP+ S+ V ++ ++ F LR+C ++ H+ + CL + +K C GPC G Sbjct: 126 YFGPYTSMKTVHTLLDLIKELFALRNCNYDLSPQNIANHKFKVCLEYHLKNCKGPCEGYQ 185 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 + Y + + + + L G + + M + +E A + + ++ +L + Q + Sbjct: 186 NEADYNQNIQQIVEILKGNFKDALHQFKEEMMALASEMRFEEAHLIKQKIQSLENYQAKS 245 Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 + +D FS+ ++ + +G T +K E T+ ++L Y + Sbjct: 246 TIVSSKISNVDVFSIVSDEEYGYVNFLQVAYGAIVRAHTLEIKKKLEETDRELLEYAIID 305 Query: 293 FYTDKPC-PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 + I++ E + ++ T+PK GEK+++++ ++ NA Sbjct: 306 IRERFFSNSKEIIVPFEVTLSE------------GLQATIPKAGEKKQLLDLSMRNAKHF 353 Query: 352 HTQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405 + E IL + L P IE +DNS+I G + V VV Sbjct: 354 RQDRFKQEKIVDPERHTNRILTQMQRDLHLSVPPVHIECFDNSNIQGTNPVSACVVFKNA 413 Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465 K YR FN+ V+ +D A M + RR+ +L+ E+ L P Sbjct: 414 KPSKKDYRHFNVKT--VEGPNDFASMEEAVYRRYRRLLDEEQPL--------------PQ 457 Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525 ++++DGGKGQLS+A L++L + +I II IAK + E +F + L L+ R Sbjct: 458 LIVIDGGKGQLSSALKALEQLELRGKIAIIGIAKRLE-----EIYFPEDSIPLYLDKRSE 512 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 L IQ+LRDEAHRF IT HRK+R K+ S LD + GIG K LLQ F +VK I + Sbjct: 513 TLRVIQQLRDEAHRFGITFHRKKRSKSAIVSELDGVEGIGEKTKETLLQHFKSVKRIREA 572 Query: 585 SPETLASIEGISKKIACKIYNHFHKN 610 + E L + G K K+Y +F + Sbjct: 573 TLEELTQVAGFRGK---KVYEYFQSH 595 >gi|315604230|ref|ZP_07879296.1| excision endonuclease subunit UvrC [Actinomyces sp. oral taxon 180 str. F0310] gi|315313936|gb|EFU61987.1| excision endonuclease subunit UvrC [Actinomyces sp. oral taxon 180 str. F0310] Length = 671 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 196/666 (29%), Positives = 325/666 (48%), Gaps = 61/666 (9%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA NL+ R+ +Y N R M++ + +++TV Sbjct: 13 DIPTSPGVYRFSDPQGRVIYVGKAKNLRNRLTNYFQDLANLHPRTQQMVTTASRVQWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E+EAL LE IK PRFN++ +DDKS+PY+ ++ + P + R+ YFG Sbjct: 73 RSEIEALTLEFTWIKEFNPRFNVVFKDDKSYPYLAVSMGERYPRVQVTRERKRAGSRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180 P+ V A+ +TI+ L R F +RSC+ VF + + RPCLL I +CS PC +++E++ Sbjct: 133 PYTQVWAIRETIDQLLRVFPVRSCSAGVFARAKAQGRPCLLGYIDKCSAPCVERVTAEEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E +F+ G + + M +A+ D+E A RD +AAL + N + + Sbjct: 193 RELAEGLCRFMQGRTGPVIRDLETQMREASANLDFERAAKLRDDVAALRTVLERNAVVLD 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D F+L + A + G+ RGT + ++ + +A ++S L Q Y+ Sbjct: 253 DGADADVFALVSDDLDAAVHVFHVRGGRIRGTRGWVIERVDGAGDAALMSRLLEQVYSSA 312 Query: 298 P---------------------------CPENILLSEEAEETSLLEISFFKQYGYKVKIT 330 P +L+S ++ + + G V I Sbjct: 313 TEDEARGARETKAAAVSVDDVAHTPTSAIPREVLVSVAPDDMETISRWLGEARGASVAIN 372 Query: 331 VPKQGEKRKIIEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYD 386 VPK+G K ++++ NA ++ T + + L+ + LP P RIE YD Sbjct: 373 VPKRGPKAQLMDTVTDNARQALTLHRTRRAGDITARSKALEQLAENLDLPAAPLRIECYD 432 Query: 387 NSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKN 445 SH G + V MVV + K+ YR FN+ D K DD + M VL RRFS+L+ Sbjct: 433 VSHTGGENQVASMVVFEDGMPRKDAYRTFNIRGTDGKGTPDDTSAMNEVLTRRFSRLLAE 492 Query: 446 EENLNFHPK--------------KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENR 491 E + + + F PD+V++DGG Q++AA+ L+ + + Sbjct: 493 EAGIEGEDEDGVAYASGPIEAATGRPRRFSYRPDLVVVDGGLPQVNAARAALEAVGAD-- 550 Query: 492 ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH-RKRRK 550 + ++ +AK + E + L+L LY +Q LRDE+HRFAIT H ++R + Sbjct: 551 VPVVGLAKRLE-----EVWIPGDEFPLILPRTSEALYLLQYLRDESHRFAITKHRKRRSR 605 Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 + S LD I G+GP R+ LL+ FG+VK + ++P+ +A ++G+ +A +I++ H + Sbjct: 606 ASRRSVLDSIPGLGPARQAALLKHFGSVKRLREATPDQIAHVKGVGALLARQIHDRLHTS 665 Query: 611 TSHTPT 616 + + Sbjct: 666 SREETS 671 >gi|52081351|ref|YP_080142.1| excinuclease ABC subunit C [Bacillus licheniformis ATCC 14580] gi|52786728|ref|YP_092557.1| excinuclease ABC subunit C [Bacillus licheniformis ATCC 14580] gi|81384876|sp|Q65GF0|UVRC_BACLD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|52004562|gb|AAU24504.1| excinuclease ABC (subunit C) [Bacillus licheniformis ATCC 14580] gi|52349230|gb|AAU41864.1| UvrC [Bacillus licheniformis ATCC 14580] Length = 590 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 184/613 (30%), Positives = 302/613 (49%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D V+YVGKA L+ R++SY + H + ++S+I + + VT + Sbjct: 12 LPDQPGCYLMKDRQDTVIYVGKAKILKNRVRSYFSGS-HDAKTQRLVSEIEDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++N++L+DDKS+P+I IT+ + P L R +G YFGP+ Sbjct: 71 NIEALILEMNLIKKYDPKYNVMLKDDKSYPFIKITN-ERHPKLVVTRKVKKDKGRYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A +T L R + LR CA + R CL + + +C PC ++S E + Sbjct: 130 PNVQAARETKKLLDRLYPLRKCA----KLPDRVCLYYHLGQCLAPCVYDVSEETNRQLTE 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E +FL GG + +K+++ M +A+ +E A RD++A + + N M Sbjct: 186 EITRFLKGGYNEVKKELEAKMLEASENLQFERAKEFRDQIAHIESTMEKQKMMLNDMVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ ++K C+Q F G+ E+ + + P+ Sbjct: 246 DVFAYSYDKGWMCVQVFFIRQGKLIERDVSMFPLYREADEEFLTFIGQFYSKNNHFLPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 IL+ + ++ + E+ V + PK+G K+ ++ A NA + Sbjct: 306 ILVPDSVDKDMIEELL-------DVNVRQPKRGAKKDLLLLAHKNAKLALKEKFSLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E ++ K + + P RIE +DNS+I G V MVV + K +YRK+ + Sbjct: 359 EERTIGAIEKLGKALDI-YTPYRIEAFDNSNIQGTDPVSAMVVFLDGKPHKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++++K PD++++DGGKGQ+SA Sbjct: 418 T--VEGPDDYGSMREVIRRRYTRVLKEN--------------LPLPDLILIDGGKGQVSA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A VL+ +L ++ + + + K K E + L Y +QR++DE Sbjct: 462 ALDVLENELGLD--VPVAGLVKDDKHRTSN-LLIGDPLEIVQLERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAI+ HR+ R K+A+ S LD I G+G RK+LLL+ FG+VK + +S E + + GI Sbjct: 519 HRFAISFHRQLRGKSAFQSVLDGIPGVGEQRKKLLLKHFGSVKKMKEASAEDIRKL-GIP 577 Query: 597 KKIACKIYNHFHK 609 K A I K Sbjct: 578 LKTAQLIEEALKK 590 >gi|148262448|ref|YP_001229154.1| excinuclease ABC subunit C [Geobacter uraniireducens Rf4] gi|146395948|gb|ABQ24581.1| Excinuclease ABC subunit C [Geobacter uraniireducens Rf4] Length = 636 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 196/622 (31%), Positives = 301/622 (48%), Gaps = 32/622 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVT 63 + P PG+Y M VLYVGKA +L+KR++SY S + + I +++++ +I VT Sbjct: 33 RFPSSPGIYIMKGADSTVLYVGKARDLKKRVRSYFATSGDSRYHIRFLMARVTDIEVIVT 92 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EAL+LE +IK+ +P++N LRDDK++ + + P L R + YFG Sbjct: 93 DTEKEALILENTLIKKYRPKYNFNLRDDKTYFSLRMDMTEDFPRLTIIRKVTRDGARYFG 152 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P++S A + L + F LR R R RPCL FQ+++CS PC G IS E Y Sbjct: 153 PYSSASAARAVLKQLYKLFPLRHYPMESCRKRKRPCLFFQLRQCSAPCHGLISREDYTAL 212 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NR 241 A FL G + M A E YE A RD + +++ + Sbjct: 213 AEGAGLFLKGKTREIVRIFKERMAAAAATEKYEEAARFRDLIRSITVTVEKQKMVTQGGD 272 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D Y + F G G+ + + + + + I S+ + D P Sbjct: 273 SDIIGFYREGERLYLALLFIRGGNLMGSRNYSFRWEMDDSEG-IASFLNEYYNQDVFIPA 331 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 ILL E + LE ++ G KV ITVP +G + ++++ A NA S +K S Sbjct: 332 EILLPLPIAEPAPLEELISEKRGKKVCITVPCRGVRLELVKLAGKNAETSAMEKKKALES 391 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 + +LK+ ++ LP +P+RIE YD S+I G VG V + K YR++ + Sbjct: 392 CESVLKELQERLHLPELPRRIECYDISNIQGRVPVGSKVAFLDGKADKAHYRRYRIKG-- 449 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 V DD AMMR VL RRF QE +PD++++DGG GQL+ Sbjct: 450 VSQSDDFAMMREVLSRRFR---------------QEADRDDYPDLIVVDGGIGQLNVLTR 494 Query: 482 VLKKLNVENRITIISIAK-GPKRSAG--------MEKFFVKKGEALVLNMRDPILYFIQR 532 VL++L+VE + +AK +R G F + +VL L + R Sbjct: 495 VLEELHVEG-VAAAGLAKSRVEREMGAAEISRSDERIFLPGRKNPVVLRQNSAPLLLLAR 553 Query: 533 LRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDEAHRFAIT H+K R + S L+ + G+G R++ LL+ FG++K + ++ E L Sbjct: 554 IRDEAHRFAITYHKKLRGRELLTSRLEGVPGVGTKRRKELLRHFGSLKKLETATLEELQK 613 Query: 592 IEGISKKIACKIYNHFHKNTSH 613 +EGI++ +A ++ HFH + Sbjct: 614 VEGITRTVAEAVWEHFHPKGNQ 635 >gi|163754371|ref|ZP_02161493.1| excinuclease ABC, C subunit [Kordia algicida OT-1] gi|161325312|gb|EDP96639.1| excinuclease ABC, C subunit [Kordia algicida OT-1] Length = 596 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 186/625 (29%), Positives = 310/625 (49%), Gaps = 52/625 (8%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + +P PGVYQ D G++LYVGKA NL+KR+ SY N+ + ++ +I +I+ Sbjct: 7 LQLKTLPTNPGVYQYYDKDGKLLYVGKAKNLKKRVASYFTKNHEYGKTRVLVKKIVSIKH 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE +ALLLE N+IK+ +PR+N++L+DDKS+P+I I + P ++ R Sbjct: 67 IVVATETDALLLENNLIKKYQPRYNVMLKDDKSYPWICI-KNERFPRVFPTRRVIKDGSE 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175 YFGP+ S+ V ++ ++ + LR+C + + + + CL + + C GPC G Sbjct: 126 YFGPYTSMKTVRTLLDLIKGLYPLRTCNYDLSQEKINAGKYKVCLEYHLGNCLGPCEGYQ 185 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 + + Y E + ++ + G + + M ++E A ++++ L + Q + Sbjct: 186 TIQSYDEQIVAIREIIKGNFKDSLNQFKAQMKTYAEAMEFEQAQKVKEKIDILENYQAKS 245 Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 + +D F++ +++ I G + T +K + T+ ++L + + Sbjct: 246 TVVNPKISNVDVFTIVSDESFGYINFLQLSLGSIIRSHTMEIKKKLDETDKELLELAITE 305 Query: 293 FYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 + K + + + E E K KIT+PK G+K++I+E +L NA Sbjct: 306 IHQRFKTNSKELYVPFEVEVGE------------KFKITIPKLGDKKRILELSLRNAKYH 353 Query: 352 HTQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405 ++ + I+ K L P+ IE +DNS+I G + V VV Sbjct: 354 RMERFKQIKLTDPDKHVNRIMAQMKKDLRLSEEPRHIECFDNSNIQGSNPVAACVVFKNG 413 Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465 K +YR FN+ V DD A M V+ RR+ +L++ ++ L P Sbjct: 414 KPSKKEYRHFNIKT--VVGPDDFASMEEVVYRRYKRLVEEKQPL--------------PQ 457 Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525 ++++DGGKGQLS+A L LN+ +I II IAK + E ++ L L+ + Sbjct: 458 LIVIDGGKGQLSSALKSLDALNLRGKIAIIGIAKRLE-----EIYYPGDSIPLYLDKKSE 512 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 L IQ LR+EAHRF IT HR +R + S L+ I GIG LL+ F +VK IS + Sbjct: 513 TLKIIQHLRNEAHRFGITFHRNKRSNSALNSELETIAGIGEKTIVELLKKFKSVKRISEA 572 Query: 585 SPETLASIEGISKKIACKIYNHFHK 609 S E ++++ G S+ A KIYN+FHK Sbjct: 573 SLEDISAVVGNSR--AKKIYNNFHK 595 >gi|298490257|ref|YP_003720434.1| excinuclease ABC subunit C ['Nostoc azollae' 0708] gi|298232175|gb|ADI63311.1| excinuclease ABC, C subunit ['Nostoc azollae' 0708] Length = 625 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 190/619 (30%), Positives = 305/619 (49%), Gaps = 29/619 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVT 63 ++P GVY M D ++Y+GK+ L+ R++SY + + T R+ M+ + I F VT Sbjct: 23 EIPPEAGVYLMRDGCDCIIYIGKSRKLRSRVRSYFRDSTSKTERMNTMVKLVTEIEFIVT 82 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQGSY 121 TE EAL LEAN+IK+ +P FN+LL+DDK +PY+ IT + P ++ R + Y Sbjct: 83 DTETEALALEANLIKQHQPYFNVLLKDDKKYPYLCITWSEQYPRIFITRKRQLGKPKDKY 142 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GP+ + + ++ +R F LR +F + RPCL + I RC G C IS E+Y Sbjct: 143 YGPYTDSSLLREILHLCKRIFPLRQRPQPLF--KDRPCLNYDIGRCPGVCQKLISVEEYQ 200 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + + G L E + M A+ + ++E+A RD++A L + Sbjct: 201 KISQKIAMVFQGRTQELIEILTEQMQAASEELNFETAAKVRDQIAGLKSLTAQQKVSLPD 260 Query: 242 ----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-- 295 D +L + A IQ GQ +S++ IL L + Y Sbjct: 261 DTVSQDAIALAADDQHAHIQLFQIRAGQLVAR--LAFIANSDAEPGAILQRVLEEHYQTA 318 Query: 296 -DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 + P I + E + +L ++ G KV I PK+ K ++IE NA + Sbjct: 319 ENVEIPTEISVQHELPDGDILADVLTERKGKKVTIVAPKRQTKAELIEMVERNAQYELQR 378 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 ++Q L+D L +P RIE YD SHI G + V VV + K YR Sbjct: 379 MQKLGNANQQALQDLADILDLSELPHRIEGYDISHIQGTNVVASQVVFIDGLPAKQYYRH 438 Query: 415 FNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472 + + D+ DD A + V++RRF + +N P+ WPD+V++DGG Sbjct: 439 YKIKDPDITIGHSDDFASLGEVIQRRFRKYREN-------PQLSRVDNSDWPDLVMIDGG 491 Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532 KGQLS+ +L ++++ + ++S+AK + E F + + L P + ++R Sbjct: 492 KGQLSSVVTILAEMDLLADLQVVSLAKKRE-----EIFLPGESKPLETKAEQPGVQLLRR 546 Query: 533 LRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 LRDEAHRFA+ HR++R K S LDEI G+G R++LLL F ++ I +++ + L Sbjct: 547 LRDEAHRFAVCFHRQQRSDKLTRSRLDEIPGLGQHRQKLLLAHFRSIDYIRQATSQQLEE 606 Query: 592 IEGISKKIACKIYNHFHKN 610 ++GI K+A IY++FH + Sbjct: 607 VQGIGMKLAKDIYDYFHPS 625 >gi|282901037|ref|ZP_06308970.1| Excinuclease ABC, C subunit [Cylindrospermopsis raciborskii CS-505] gi|281194128|gb|EFA69092.1| Excinuclease ABC, C subunit [Cylindrospermopsis raciborskii CS-505] Length = 631 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 196/626 (31%), Positives = 303/626 (48%), Gaps = 37/626 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 ++P PGVY M D ++Y+GK+ L+ R++SY + T RI M+ QI +I F +T Sbjct: 22 EIPHAPGVYLMRDDRDTIIYIGKSRKLRSRVRSYFRDYTSKTQRINTMVQQITDIEFIIT 81 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST------- 116 TE EAL LEAN+IK+ +P FN+LL+DDK +PY+ IT + P L+ R Sbjct: 82 DTEAEALALEANLIKQHQPYFNVLLKDDKKYPYLCITWSEEYPRLFITRKRQRGTQKLQG 141 Query: 117 ---IQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 + Y+GP+ + ++ Q+ F +R +F + RPCL + I RC G C Sbjct: 142 DRPHKDKYYGPYTDSTLLRGVLHICQQIFPMRQRPQPLF--KDRPCLNYDIGRCPGVCQK 199 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 +S E Y + V + G L + + M A + +E+A RD++ L + Sbjct: 200 LVSVEDYHKVVEKVAMVFQGRTEELIDILTLQMETAVSELKFEAAAGIRDQIIGLKSLTA 259 Query: 234 HNDSIYNR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYF 289 D +L + A IQ G+ G F ++ +IL Sbjct: 260 RQKVSLPDDTVSRDAVALATDNQQAHIQLFQIRAGKLVGRLAFVAHGHAD--PGEILQRV 317 Query: 290 LRQFYTDKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 L + Y P IL+ E +L ++ G KV I P + K ++IE Sbjct: 318 LEEHYQTADSVEIPTEILVQYELPHGDILADFLRQRKGKKVNIITPLRQTKAELIEMVEK 377 Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 NA + +Q L+D + L +P RIE YD SHI G +AVG VV + Sbjct: 378 NAQYELKRMQKMGEVNQKCLEDLAEILGLLDLPHRIEGYDISHIQGSNAVGSQVVFIDGL 437 Query: 407 FVKNQYRKFNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWP 464 K YR + + ++V DD A + V+ RRF Q I+N P+ WP Sbjct: 438 PAKQYYRHYKIKNSNVTIGHSDDFASLVEVIYRRFRQYIEN-------PQLPRQGNDDWP 490 Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524 D++++DGGKGQLS +L+++++ + +IS+AK + E F + + L+ Sbjct: 491 DLIMIDGGKGQLSTVVNILQEVDLFKDLQVISLAKKRE-----EIFLPDESQPLITQTEQ 545 Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583 P + ++RLRDEAHRFAI HR++R S LDEI G+G R++LLL F T+ I + Sbjct: 546 PGVQLLRRLRDEAHRFAIGFHRQQRSNQWQRSCLDEIPGLGVHRQKLLLAHFRTIDYIRQ 605 Query: 584 SSPETLASIEGISKKIACKIYNHFHK 609 ++ + LA GI K+A +I+ +FH Sbjct: 606 ATVQQLAEAPGIGLKLAQQIFAYFHP 631 >gi|118581649|ref|YP_902899.1| excinuclease ABC subunit C [Pelobacter propionicus DSM 2379] gi|118504359|gb|ABL00842.1| Excinuclease ABC subunit C [Pelobacter propionicus DSM 2379] Length = 617 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 191/626 (30%), Positives = 308/626 (49%), Gaps = 32/626 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRF 60 Q+P PGVY M D G +LYVGKA +L++R++SY ++ + ++ ++++ +I Sbjct: 9 KIRQLPAAPGVYIMRDAGGEILYVGKARSLRQRVRSYFGASADSRYQVRFLMARCVDIDI 68 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T TE EALLLE +IK+ +PR+N+ L+DDK++ + + P R Sbjct: 69 VLTDTEKEALLLENTLIKQHRPRYNLDLKDDKTYFSLRLDPAEPFPRFTLVRKIPRDSAR 128 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGP+AS A + L R F LR + R RPCL QI +CS PC G +++ Y Sbjct: 129 YFGPYASASAARDVLRQLLRMFPLRHYPLTRCMARKRPCLYHQIGQCSAPCAGLVTAADY 188 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 V A FL G + L + R M +A+ + +E A R+ L ++ + Sbjct: 189 ATLVEGAMLFLEGKSKQLVAEFKRRMLEASDQLRFEEAARWRNLLRSIQVTVEKQKMVTR 248 Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY-TDK 297 D + + + F G G+ F L E +A+ ++ FLRQ+Y Sbjct: 249 GGDCDVLGFHRDGPRLQLALLFIRGGVLTGSRQFSLNW--ELDDAEGIASFLRQYYREGT 306 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P+ I L E E+ + L + G +V I P +G KR+++E A NA ++ Sbjct: 307 FIPDEIHLPLEIEDGAPLAELLSESRGKRVVIARPLRGVKRELVELAGKNAATQLRERDE 366 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + + +L+ ++ L +P+RIE YD S I G +VG VV E K YR++ + Sbjct: 367 KQAAADAVLEALRQRLKLTRLPRRIECYDISTIQGRFSVGSGVVFSEGRPDKPHYRRYRI 426 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 V+ Q+D AM+ V RRF E L PD+V++DGG GQL+ Sbjct: 427 R--HVEGQNDFAMLAEVFSRRFRPEKLEAEPL--------------PDLVVVDGGIGQLN 470 Query: 478 AAQGVLKKLNVENRITIISIAK-GPKRSAGMEK--------FFVKKGEALVLNMRDPILY 528 A ++ +L +E RI ++S+AK +R A E+ F + +VL L Sbjct: 471 AVAQIIAELGLEGRIDLVSLAKSRVERDAEAEELRKSDERVFLPGRRNPVVLRQNSGPLL 530 Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 + +RDEAHRFAI HR R K S ++ + GIG R+ LL+ FG+++++ ++S E Sbjct: 531 LLAAIRDEAHRFAIGYHRTLRGKEGIASAIEGVAGIGSKRRAALLKRFGSLQLLKQASLE 590 Query: 588 TLASIEGISKKIACKIYNHFHKNTSH 613 + ++EG+S+ A +++ H Sbjct: 591 EIVAVEGMSRTTAEAVFDWLHGEKGE 616 >gi|319948952|ref|ZP_08023057.1| excinuclease ABC subunit C [Dietzia cinnamea P4] gi|319437390|gb|EFV92405.1| excinuclease ABC subunit C [Dietzia cinnamea P4] Length = 709 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 184/653 (28%), Positives = 298/653 (45%), Gaps = 56/653 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVG A NL+ R+ SY + R M++ +++TV Sbjct: 13 SIPTEPGVYRFRDEHGRVIYVGTAKNLRSRLSSYFADLSLLHPRTRQMVTSAAGVQWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE IK+ PRFN+ RDDK++P + +T ++P + +R YFG Sbjct: 73 STEVEALQLEYTWIKKYDPRFNVRYRDDKTYPMLAVTVGEEVPRAFVYRGPRRPGTRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ T+++LQR F +RSC+ V++ + RPCLL I +C+ PC G ++ +++ Sbjct: 133 PYSHAWAIRDTLDTLQRVFPVRSCSAGVYKRQAQLGRPCLLGYIDKCAAPCIGRVTPDEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 V+E FL+G + +I + M +A+ D+E A RD L A+ + Sbjct: 193 RLIVNELIDFLAGRTDAIMRRIEKQMMEASADLDFERAARLRDDLGAMRRAMEKQAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQIL----------S 287 D + ++ +Q G+ RG + ++ S Sbjct: 253 DGTDADVVGVEVDELQVSVQVFHVRGGRIRGQRGWVVEHAHGIDEDGEFDAARAIPGVVS 312 Query: 288 YFLRQFYTDK--------------PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPK 333 +L QFY + P +L+ E++ L G +V + VP+ Sbjct: 313 DYLAQFYGGEADLAEAAESGDIASAVPREVLVPALPEDSDELADWLSGLRGSRVSLRVPQ 372 Query: 334 QGEKRKIIEQALINAHRSHTQKLSTE----ISHQMILKDFTKKFALPHIPKRIEIYDNSH 389 +G+KR + E NA + TQ + L++ + L P RIE D SH Sbjct: 373 RGDKRALAETVHRNAVEALTQHKLRRSGDLTARSAALQEIQETLELDSAPLRIECVDISH 432 Query: 390 IMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIK---- 444 G + +VV + K+ YR + + DD A + V RRF + + Sbjct: 433 TQGTDVMASLVVFEDGIPRKSDYRLYRIRDAAGDGHSDDVASIAEVTRRRFRRHHEDPAL 492 Query: 445 ---------NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITII 495 ++E + F P + ++DGG+ Q+ AA VL +L V + + +I Sbjct: 493 TPDETDGPVDDEPGDPEAAPPARRFAYPPQLFVVDGGRPQVEAAAEVLSELGVTD-VPVI 551 Query: 496 SIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR-KRRKKAAY 554 IAK + E + + ++ L+ +QRLRDEAHRFAI HR R K+ Sbjct: 552 GIAKRLE-----EIWLPGEEYPVIFPRHGEGLFLLQRLRDEAHRFAIRAHRGARSKRMTA 606 Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 S LD++ G+GP R+ L++ F TV + +S E L ++ GI +A I Sbjct: 607 SVLDDVPGLGPARRAALVEKFPTVSALRAASVEDLCTVPGIGPGVAASILATL 659 >gi|332686483|ref|YP_004456257.1| excinuclease ABC subunit C [Melissococcus plutonius ATCC 35311] gi|332370492|dbj|BAK21448.1| excinuclease ABC subunit C [Melissococcus plutonius ATCC 35311] Length = 595 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 190/616 (30%), Positives = 309/616 (50%), Gaps = 41/616 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY ++ T + ++S+I++ + VT + Sbjct: 12 LPDQPGCYLMKDKTGEVIYVGKAKILKNRVRSYFRGSHDT-KTERLVSEIDDFEYIVTES 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EALLLE N+I + P++NI+L+DDKS+P+I IT K P L R + QG YFGP+ Sbjct: 71 NIEALLLEINLIHKNDPKYNIMLKDDKSYPFIKIT-HEKYPRLLITRKVAKDQGLYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 V A +T L R + LR C+ H+ +PCL + + +C P + + Y + V Sbjct: 130 PDVGAANETKKLLDRLYPLRKCS----LHQKQPCLYYHLGQCLCPSVFHVDPKVYTDMVG 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E K+FL+GG +++++ NM A ++E A +RD++ A+ + Sbjct: 186 EIKQFLNGGYTKIQQQLETNMKTAAEAMEFERAAEYRDQIKAIETVMTRQKITNTDLIDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ ++ + + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRQGKLIERDVSLFPFYNDKEDDFLTFVGQFYQKDEHFIPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 IL+ + ++ S+ + K I P++GEK+K+++ A NA + Sbjct: 306 ILIPDAIDKKSMEVMLSTK-------IIQPQRGEKKKLVKLATKNAVVALKEKFNLVMHK 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + ++ + + RIE +DNS+IMG V MVV + K++YRK+ + Sbjct: 359 QERTTGAIEKLAEAMHISLPR-RIESFDNSNIMGSDPVSAMVVFVDGKPKKDEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 VK DD A MR V+ RR+S+++K +PD++I+DGGKGQ+ A Sbjct: 418 T--VKGADDYASMREVIYRRYSRVLKEN--------------LPFPDLIIMDGGKGQIDA 461 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ VL + I I + K K E F K E + L + +QR++DE H Sbjct: 462 AKSVLDN-QLGIDIPIAGLVKNDKHKTS-ELLFGSKLEPIPLARNSQEFFLLQRIQDEVH 519 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ R K ++ S LD I G+GP RK LLL F ++K + ++ E L G+ K Sbjct: 520 RFAITFHRQLRSKNSFASKLDRIEGLGPKRKNLLLCQFKSLKNMMAATEEELQRA-GLPK 578 Query: 598 KIACKIYNHFHKNTSH 613 +A +Y +FH+ + Sbjct: 579 NVAKNVYTYFHEQEKN 594 >gi|168334892|ref|ZP_02693013.1| excinuclease ABC, C subunit [Epulopiscium sp. 'N.t. morphotype B'] Length = 602 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 196/615 (31%), Positives = 300/615 (48%), Gaps = 37/615 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVT 63 +P PGVY M D V+YVGKA NL+ R+ Y N NH+ + M+S I + + VT Sbjct: 3 NLPTTPGVYLMKDDLDEVIYVGKAKNLKNRVSQYFQKNKNHSAKTIKMVSNIASYEYIVT 62 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL+LE N+IK+ P++NI L+DDK +PYI I K P + R YFG Sbjct: 63 NTEVEALILECNLIKKYSPKYNIRLKDDKRYPYIKINIKSPFPRIQVVRKIIKDDAKYFG 122 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSEKYM 181 P+ ++ + I +++ + LRS + + + R CL F I RCSGPC I++ +Y Sbjct: 123 PYTDATSMWEMIELIKQLWQLRSXNKKLPKDIGKNRECLNFHIGRCSGPCIKNITAREYH 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V E +FLSG ++ + M++A+ ++E A RD+L A++ ++ Sbjct: 183 KIVDEIVEFLSGDYRKXVTELKQRMSEASDAMNFELAATLRDQLIAIAKLEQKQTVDTAS 242 Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 + D + N A IQ F G+ G F L+ + + F+ FY + Sbjct: 243 KDNQDIVAYAEGTNDALIQVYFVRSGKLVGREHFILRDATGDEAKTLFRNFILXFYAEAT 302 Query: 299 -CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHT 353 P I++ E LLE + G +V IT PK+G K ++E A NA Sbjct: 303 FVPREIVVQVIPAEVELLENYLSDKRGARVVITSPKKGTKFNLLELAKKNAELTFFEQGD 362 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 Q + ++ L + L RIE +D S+ G VG MVV K+ YR Sbjct: 363 QLKKKLENTKLALSQLQEALNLEKPIIRIEAFDISNTSGVYPVGAMVVFENGVPKKSDYR 422 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 KF + V+ Q+D A M +L RR+ + + PD++ +DGGK Sbjct: 423 KFKIKT--VRGQNDYAAMEEMLSRRYKNAEEGK----------------VPDMIFMDGGK 464 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 Q++AA+ VL K N+E I + + K K + + +VL + + R+ Sbjct: 465 SQVAAAKKVLVKYNLE--ILVCGMVKDEKHRTFG---LLYEDNEIVLPKFSKLFKLVTRI 519 Query: 534 RDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 +DE HRFAI HRK R +S LDEI G+GP+RK++LL +F +V + +S E L Sbjct: 520 QDEVHRFAIEYHRKLRGN-IHSVLDEIKGVGPVRKKILLLNFKSVYNLKEASLEELEQY- 577 Query: 594 GISKKIACKIYNHFH 608 I K +A +Y +F+ Sbjct: 578 -IPKDVAKNVYTYFN 591 >gi|304438825|ref|ZP_07398751.1| excision endonuclease subunit UvrC [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372708|gb|EFM26288.1| excision endonuclease subunit UvrC [Peptoniphilus duerdenii ATCC BAA-1640] Length = 608 Score = 488 bits (1257), Expect = e-135, Method: Composition-based stats. Identities = 195/616 (31%), Positives = 326/616 (52%), Gaps = 30/616 (4%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRFTVTC 64 +PE PGVY M D V+YVGKA NL+ R++ Y S + ++ M+ I++ + + Sbjct: 10 LPENPGVYLMKDKTDAVIYVGKAKNLRNRVRQYFGSYGKSTRKVESMVKNISDFEYIIVG 69 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 EVE+L+LE+N+IK L P++NILLRDDK +PYI +T K + P + K R YFGP Sbjct: 70 NEVESLILESNLIKELSPKYNILLRDDKQYPYIKVTVKDRFPKVEKTRRIIKDGAKYFGP 129 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSEKYME 182 + +V AV I ++ + +R C ++ + +PCL F IK+C GPC G+++ E+Y Sbjct: 130 YPNVMAVNDAITVFEKRYMIRDCKLNLNKKPLSFKPCLNFFIKKCMGPCKGDVTEEEYAP 189 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIY 239 + E FL+G + + + + M A+ + ++E A RD + +L +Q + Sbjct: 190 MIDEILNFLAGDDTLI-NSLEKEMMDASKELNFEKAAELRDMMNSLIALQEKQLMDSANT 248 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP- 298 + D + + +Q F G+ G F ++ +++ +I+S F++QFY Sbjct: 249 DNRDIIAFARGMDSVVVQIFFIRLGKIVGREHFLIEDPYGASDEEIISDFMKQFYMGAAF 308 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P+ IL E++ +LE ++ G KVKI+VP++GEK ++ NA ++ + Sbjct: 309 VPKEILTESMPEDSEILEEFLSEKAGKKVKISVPQKGEKSHLMSLVRKNALDMVSKYQDS 368 Query: 359 EISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 S L+ + L IPKRIE YD S+I G +VG MVV K+ YRK Sbjct: 369 YESKMKSNLIALEKLQEALNLKKIPKRIECYDISNISGVESVGSMVVFENGDAKKSDYRK 428 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + V DD A ++ VLERRF + ++++ SF PD++++DGGKG Sbjct: 429 FRIKT--VVGPDDYASLKEVLERRFKRAKEDQK----------GSFTLLPDLILMDGGKG 476 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q+ A+ V++ + +E I + + K + + + + L +R + + +++ Sbjct: 477 QVGIAKQVMEDMGIE--IEVAGLVKDDFHTTRA---IIYENREIPLEIRGGLYRLLYKIQ 531 Query: 535 DEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 +EAHRFAI HR K A S LD+I GIG +RK+ L++ F T+ I ++ E L + Sbjct: 532 EEAHRFAIGYHRSLHSKTAFKSELDDIEGIGKIRKQNLMKHFKTIDKIKEATIEELMEVP 591 Query: 594 GISKKIACKIYNHFHK 609 +++ A ++YNH+ K Sbjct: 592 SMNRTSAEELYNHWRK 607 >gi|113476857|ref|YP_722918.1| excinuclease ABC subunit C [Trichodesmium erythraeum IMS101] gi|119367860|sp|Q10Z79|UVRC_TRIEI RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|110167905|gb|ABG52445.1| Excinuclease ABC subunit C [Trichodesmium erythraeum IMS101] Length = 622 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 200/624 (32%), Positives = 310/624 (49%), Gaps = 38/624 (6%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFT 61 +++P+ PGVY M D + R+LY+GK+ L+ R++SY NHTHRI+ MI QI I F Sbjct: 19 LKEIPQTPGVYLMRDRSDRILYIGKSKKLRNRVRSYFRDGKNHTHRISLMIQQIVEIEFI 78 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQG 119 VT TE EAL LEAN++K+ +P FN+LL+DDK +PY+ IT P ++ R + Sbjct: 79 VTDTEAEALALEANLVKQHQPYFNVLLKDDKKYPYLCITWSEDYPRIFITRKRRLGKAKD 138 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 Y+GP+ + T++ ++R F LR +F+ R+ CL + I RC G C I+ E+ Sbjct: 139 RYYGPYVDTRLLRNTLHLVKRIFPLRQRPKPLFKDRS--CLNYDIGRCPGVCQELITPEE 196 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + V G L + + M + ++E A RD++ L+ + Sbjct: 197 YHKIVQRVAMIFQGRTGELIDILNTQMEKEAEALNFEKAAFIRDQIRGLNSLNADQKVSL 256 Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTD-----SESTNAQILSYFL 290 D +L N +AC+Q G+ G F + IL L Sbjct: 257 PDDRVSRDAIALAGNHQIACVQLFQIRAGKLVGRLGFIAEIPDLGTAENQELGVILQRVL 316 Query: 291 RQFYT---DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347 Y P I++ E E++ L+ ++ G KV+I VP++ K ++IE N Sbjct: 317 ESHYQIVESVEIPTEIIVQNELPESNFLQNWLTEKKGKKVEIFVPQRQGKAELIEMVKKN 376 Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 A + + + D + LP +P RIE YD SHI G AV VV + Sbjct: 377 AEYELLRLAKMSDRNNEAMTDLAEILDLPELPHRIEGYDISHIQGSDAVASRVVFIDGLP 436 Query: 408 VKNQYRKFNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465 K YR + + +V++ D A M V+ RRF K + PD Sbjct: 437 AKQHYRHYKIKNPEVRSGHSDDFASMAEVIGRRFRDYEKQ-------------TTTDKPD 483 Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525 ++++DGGKGQLSA V++++N+ + ++S+AK + E F + E L + P Sbjct: 484 LIMIDGGKGQLSAVVAVMEEMNILEEVRVVSLAKQRE-----EIFLPGESEPLRTDAEQP 538 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 + ++RLRDEAHRFA++ HR RR + S LDEI G+G R++LLL F +V I + Sbjct: 539 GVQLLRRLRDEAHRFAVSFHRDRRSQRMKRSRLDEIPGLGQHRQKLLLGHFHSVDYIRMA 598 Query: 585 SPETLASIEGISKKIACKIYNHFH 608 + E LA + G+ K+A +IY++FH Sbjct: 599 TVEQLAEVSGVGPKLAQQIYDYFH 622 >gi|310820626|ref|YP_003952984.1| UvrABC system protein C [Stigmatella aurantiaca DW4/3-1] gi|309393698|gb|ADO71157.1| UvrABC system protein C [Stigmatella aurantiaca DW4/3-1] Length = 646 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 193/632 (30%), Positives = 309/632 (48%), Gaps = 38/632 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQ-INNIRF 60 + +P PGVY M D G ++YVGKA NL+ R++SY T ++ + +I Sbjct: 8 KLDSLPTEPGVYLMKDRRGLIIYVGKAVNLRNRVRSYFTRTGDTRAFIALLDTMLGDIET 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 + E EALLLE +IK+ KPRFN+LL+DDK F + + P L R Sbjct: 68 VLVHNEKEALLLENELIKKHKPRFNVLLKDDKQFISLRLDRSQPYPRLEVVRKYERDGAR 127 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGP++S A+ +T+ + R F LR+C D V +R RPCLL QI RC PC + E Y Sbjct: 128 YFGPYSSAGAIRETLRIINRYFHLRTCTDHVLANRKRPCLLHQIGRCPAPCVYPVPPEDY 187 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--- 237 V E FL G L + + M +A + +E A RD+L A+ Sbjct: 188 RRSVDEVGMFLEGKAGELVDGLRARMKRAASELKFEEAARLRDQLQAIERSLERQKVATT 247 Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 + D F+ Y + + G+ G F + + S+ + Sbjct: 248 DFKDQDVFASYREGDRILFYVLWVRQGRLNGGQAFPFGSQEFPDEELLASFVNLYYDQGS 307 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 PE +LL E E LE ++ G KV++ VPK+GEK +++ A NA ++ ++ Sbjct: 308 FVPEEVLLPLEPESLEGLEGLLSERKGQKVRVLVPKRGEKHELVLMAHKNAEQAFVERKR 367 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 T+ +L +K L + P+R+E +D SH G S V V V + K++YR++ + Sbjct: 368 TKDETDAVLGRLQQKLGLRNYPRRMECFDISHFQGSSIVASQVAVTDGETDKSRYRRYKI 427 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 ++ QDD A M V+ RR + + ++ PD++++DGGKGQL+ Sbjct: 428 KT--LEKQDDFASMYEVISRRLKRGQEEKD---------------LPDLLVIDGGKGQLA 470 Query: 478 AAQGVLKKLNVENRITIISIAK---------GPKRSAGMEK-FFVKKGEALVLNMRDPIL 527 +A +K L VE + ++ +AK + + E+ F + + + +VL + Sbjct: 471 SAHAAMKDLGVEG-VDVVGLAKSRDQEVFDRDAESARSPERVFVLGRKDPIVLPQNSAEI 529 Query: 528 YFIQRLRDEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586 + + R+RDEAHRFAIT RK RK +S L++I G+G R++LLL+ FG++K + +S Sbjct: 530 FMLTRMRDEAHRFAITFQRKDLRKSRIHSALEDIPGVGEGRRKLLLRHFGSLKRVGEASI 589 Query: 587 ETLASIEGISKKIACKIYNHFH---KNTSHTP 615 E LA + G +A +++ H + + P Sbjct: 590 EDLAEVVG--PSMAERVHAGLHGHPEEDASDP 619 >gi|325285985|ref|YP_004261775.1| UvrABC system protein C [Cellulophaga lytica DSM 7489] gi|324321439|gb|ADY28904.1| UvrABC system protein C [Cellulophaga lytica DSM 7489] Length = 596 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 189/623 (30%), Positives = 300/623 (48%), Gaps = 50/623 (8%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + +P PGVYQ D ++LYVGKA NL+KR+ SY + + + ++ +I I+ Sbjct: 9 LQLSTLPNSPGVYQFYDKEEKILYVGKAKNLKKRVSSYFNKTHDNGKTKVLVKKIVYIKH 68 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE +ALLLE N+IK+ KPR+N+LL+DDK++P+I I + P ++ R+ Sbjct: 69 IVVDTESDALLLENNLIKKYKPRYNVLLKDDKTYPWICI-KNERFPRVFYTRNLIKDGSE 127 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175 YFGP+ ++ V ++ ++ + LR+C + + H+ + CL + + C GPC G Sbjct: 128 YFGPYTNMKTVRVLLDLIKSVYPLRTCNYDLSAEKINAHKYKVCLEYHLGNCKGPCEGYQ 187 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 ++E+Y + E K L G + M + +E A ++++ L + Q Sbjct: 188 TTEEYQRQIVEIKDILKGNFKSSLHYFKTQMKFLASEMRFEEAQDFKEKIEVLENYQAKT 247 Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 N +D FS+ +++ A I G + T LK T+ ++L + + Sbjct: 248 TIVNPKINNVDVFSIISDESYAYINFLQLSHGAIIRSHTLELKKKLNETDEELLQLGIIE 307 Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 L +K+T+PK G+K++I+E + NA Sbjct: 308 IRQRFKSHSRELYLPFPVTVD-----------RNLKVTIPKLGDKKRILELSERNAKYFR 356 Query: 353 TQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 ++ + I+ K L P+ IE +DNS+I G + V VV Sbjct: 357 MERFKQLKVTDPDRHTNRIMAQMKKDLRLSEEPRHIECFDNSNIQGTNPVAACVVFKNGK 416 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 K +YR +N+ V DD A M V+ RR+ +L++ E+ L P + Sbjct: 417 PAKKEYRHYNIKT--VVGPDDFASMEEVVFRRYKRLLEEEQPL--------------PQL 460 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526 +++DGGKGQLS+A L L + +I II IAK + E +F L L+ + Sbjct: 461 IVIDGGKGQLSSALKSLDALELRGKIAIIGIAKRLE-----EIYFPGDSIPLYLDKKSES 515 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 L +Q+LR+EAHRF IT HRK+R A S L+ I G+G LL+SF +VK I +S Sbjct: 516 LKIVQQLRNEAHRFGITFHRKKRSNAAINSELEGIEGVGEKTATDLLKSFKSVKRIKEAS 575 Query: 586 PETLASIEGISKKIACKIYNHFH 608 E LA + G+SK A KIYN FH Sbjct: 576 IEKLAEVVGMSK--AQKIYNTFH 596 >gi|312884542|ref|ZP_07744246.1| excinuclease ABC subunit C [Vibrio caribbenthicus ATCC BAA-2122] gi|309367854|gb|EFP95402.1| excinuclease ABC subunit C [Vibrio caribbenthicus ATCC BAA-2122] Length = 588 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 197/607 (32%), Positives = 319/607 (52%), Gaps = 31/607 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M + V+YVGKA +L+KR+ SY S + + ++S I+ I TVT TE EAL+LE Sbjct: 1 MYNADSDVIYVGKAKDLKKRLSSYFRSKVDSEKTRALVSNIDKIDVTVTHTETEALILEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK+ P++N+LLRDDKS+PYI I+ HK P + HR + +G YFGP+ AV +T Sbjct: 61 NYIKQYLPKYNVLLRDDKSYPYIFIS-AHKHPRVSIHRGTKKRKGEYFGPYPDSKAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYMEFVHEAKKFLSG 193 ++ +Q+ F +R C D+V+++R+RPCL++QI RC+ PC IS E+Y E V + FL G Sbjct: 120 LHIIQKIFTVRQCEDTVYKNRSRPCLMYQIGRCAAPCISSIISDEQYAELVDFLRLFLKG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHN 250 + + E + M A+ + +E A +RD++ A+ IQ N MD Sbjct: 180 KDQQVLESLVAKMELASKELRFEDAAKNRDQIQAIRRIQEQQFVSENSEEDMDVLGFAQE 239 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP----CPENILLS 306 +ACI G+ G+ + F K S + ++ FL Q+Y ++ P I+L+ Sbjct: 240 NGIACIHILMIRQGKVLGSRSHFPKIPSNTDREEVFYSFLTQYYLNQSESRTIPTRIILN 299 Query: 307 -EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365 E S LE + KV + G + + ++ + NA + T K++ +++ Sbjct: 300 EHLIENASALESTLSDLAHRKVSFHIAPSGNRGRYLKLSNTNALTAITSKINHKMTIFQR 359 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 K+ ++ + +I R+E +D SH MG S + VV + G +K +YR++N+ + Sbjct: 360 FKELSELLEIENIS-RMECFDISHTMGESTIASCVVFNQEGPLKQEYRRYNI--TGITGG 416 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD A M LERR+++ I + PD++ +DGGKGQL++A ++ Sbjct: 417 DDYAAMAQALERRYAKQIDVD---------------RIPDIIFIDGGKGQLNSAMKMIAN 461 Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 + R ++ IAKG R G+E G L+ P L+ +Q +RDE+H AI Sbjct: 462 HWTDWPKRPRLVGIAKGTTRKPGLETLITDDGREFGLSTDAPALHLMQHIRDESHNHAIA 521 Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR +R K S L+ I GIGP R++ LL+ G ++ + ++S E + + GIS +A Sbjct: 522 GHRAKRGKTRKTSILEGIEGIGPKRRQALLKYMGGLQELKKASVEEITKVPGISASLAEI 581 Query: 603 IYNHFHK 609 I+ + Sbjct: 582 IHQALKQ 588 >gi|149183293|ref|ZP_01861734.1| excinuclease ABC subunit C [Bacillus sp. SG-1] gi|148848986|gb|EDL63195.1| excinuclease ABC subunit C [Bacillus sp. SG-1] Length = 590 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 184/612 (30%), Positives = 301/612 (49%), Gaps = 41/612 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 12 LPDQPGCYLMKDRQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTQRLVGEIEDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++N++L+DDKS+P+I +T + P L R+ +G YFGP+ Sbjct: 71 NLEALILELNLIKKHDPKYNVMLKDDKSYPFIKLT-AERHPRLIITRNVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + A +T L R + LR C + R CL + + +C PC E+ E Y + Sbjct: 130 PNAGAANETKKLLDRIYPLRKCDNLP----DRVCLYYHLGQCLAPCVKEVEPETYKKLTD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRM 242 E +FL+GG ++K+++ M +A ++E A RD+++ + + Sbjct: 186 EISRFLNGGYKDIKKELNEKMAEAAENLEFERAKEFRDQISHIEATMEKQTMDIADFTDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ E + T+ P+ Sbjct: 246 DIFGYAVDKGWMCVQVFFIRQGKLIERDVSLFPIYDEPAEEFLTFIGQFYSKTNHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 I L E +E+ + E+ + T PK+G+K+ +++ A NA Sbjct: 306 INLPEGIDESIVSELLDVRT-------TQPKKGQKKHLVQLAGKNAEIALKEKFALIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E M + + + + P RIE +DNS+I G V M+V + K +YRK+ + Sbjct: 359 EERTVMAVDKLGEAMGI-YTPHRIEAFDNSNIQGTDPVSAMIVFLDGKPEKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 VK DD MR V+ RR+++++K PD++I+DGGKGQ+ A Sbjct: 418 S--VKGPDDYDSMREVVRRRYTRVLKEG--------------LPLPDLIIIDGGKGQIGA 461 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ VL +L + I + +AK K E + E + L R Y +QR++DE H Sbjct: 462 AKEVL-ELELNLDIPVAGLAKDDKHQTS-ELLYGNPLEIIPLEKRSQEFYLLQRIQDEVH 519 Query: 539 RFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ R K A+S LDE++GIGP RK+ L ++FG++K + +S E L G+ K Sbjct: 520 RFAITFHRQLRGKTAFSSMLDEVSGIGPKRKKQLQKTFGSMKKMKEASLEELTEA-GLPK 578 Query: 598 KIACKIYNHFHK 609 A ++ + Sbjct: 579 AAAEELMQKLKE 590 >gi|325978101|ref|YP_004287817.1| Excinuclease ABC subunit C [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178029|emb|CBZ48073.1| Excinuclease ABC subunit C [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 633 Score = 488 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 172/619 (27%), Positives = 295/619 (47%), Gaps = 40/619 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D G ++YVGKA NL+ R++SY H +++T + ++S+I + + Sbjct: 42 KLELLPDSPGCYIHKDKNGTIIYVGKAKNLKNRVRSYFHGSHNT-KTELLVSEIEDFEYI 100 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + EALLLE N+I+ P++NI L+DDKS+P+I IT + P L R Y Sbjct: 101 VTGSNTEALLLEINLIQENMPKYNIKLKDDKSYPFIKITTNEQYPRLMITRQIKKDGAMY 160 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ A + L R F + C + + C + + +C + + ++ Sbjct: 161 FGPYPDSGAATEIKRLLDRIFPFKKCTNP----ANKVCFYYHLGQCKAHTICHVDHDYFV 216 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + H+ K FL+G ++ + +++ M +A+ ++E A +RD L A+S ++ + Sbjct: 217 DMAHDVKNFLNGQDNKIVDQLKDKMQKASDLMEFERAAEYRDLLQAISTLRTKQRVMSQD 276 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 M D F Y +K C+Q F G+ ++ + Sbjct: 277 MMDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDPEEDFLTYMGQFYRDNKHF 336 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ I + +E +E + I K P++GEK++++ A+ NA + Sbjct: 337 IPKEIFIPKEIDEELVKAIVDTKIIK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 389 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +++ + +P RIE +DNS+I G S V MVV K YRK Sbjct: 390 LEKDVKKTYGAVENIGELLNIPKPV-RIEAFDNSNIQGTSPVAAMVVFVNGKPSKKDYRK 448 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + V DD A MR V+ RR+S+++K+ PD++I+DGG+G Sbjct: 449 FKIKT--VVGPDDYASMREVIYRRYSRVMKDG--------------LVPPDLIIIDGGQG 492 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+ + + I I + K K E F E + L + +QR++ Sbjct: 493 QVNVARDVI-ENKLGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELPRNSEEFFLLQRIQ 550 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+LL++ F ++ I ++ + + + Sbjct: 551 DEVHRFAITFHRQVRSKNSFSSKLDGIAGLGPKRKQLLMKHFKSLPNIQKADIDDIVN-C 609 Query: 594 GISKKIACKIYNHFHKNTS 612 GI + +A I ++ + Sbjct: 610 GIPRNVATAIKEKLNEEEA 628 >gi|319892136|ref|YP_004149011.1| Excinuclease ABC subunit C [Staphylococcus pseudintermedius HKU10-03] gi|317161832|gb|ADV05375.1| Excinuclease ABC subunit C [Staphylococcus pseudintermedius HKU10-03] gi|323464753|gb|ADX76906.1| excinuclease ABC subunit C [Staphylococcus pseudintermedius ED99] Length = 595 Score = 488 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 175/614 (28%), Positives = 287/614 (46%), Gaps = 43/614 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D +V+YVGKA L+ R++SY + T + T ++ +I + + VT + Sbjct: 15 LPMEPGCYLMKDRQNQVIYVGKAKKLRNRVRSYFTGAHDT-KTTRLVREIVDFEYIVTSS 73 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K + P L R G YFGP+ Sbjct: 74 ETESLLLELNLIKKYQPRYNILLKDDKSYPFIKIT-KERHPKLIVTRTVRKGSGKYFGPY 132 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T L R + R + R CL + I +C GPC + E+Y Sbjct: 133 PNAYSAHETKKLLDRIYPFRK----CDKMPDRLCLYYHIGQCLGPCVYPVQQEEYGRMTK 188 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH---NDSIYNRM 242 E FL+G + + + + M +A+ ++E A +RD + ++++ Sbjct: 189 EITDFLNGEDKTILKNLEEKMIKASENLEFEQAKEYRDLIQHVNNLTKKQKIMSVDQTVR 248 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F + +K CIQ F G P+ Sbjct: 249 DVFGYHVDKGWMCIQVFFIRQGNLIEREATMFPLQQTPEEEFYTFIGQFYQLNQHFLPKE 308 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358 + + ++ + + I P++G+K+++++ A NA S K Sbjct: 309 VHIPKQLDVEMV-------HTVVDTNIVTPQRGQKKQLVDMANKNARISLENKFELIARD 361 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E ++ + IP RIE +DNS+I G V MV + K YRK+ + Sbjct: 362 ESRTVKAIEQLADAMGI-QIPIRIEAFDNSNIQGVDPVSAMVSFVDGKPDKKGYRKYKIK 420 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD M+ + RR+++++ PD++I+DGGKG +S+ Sbjct: 421 S--VEGPDDYKSMQEAVRRRYTRVLNEG--------------LPLPDLIIVDGGKGHMSS 464 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 VL+ +L ++ I I +AK K E + + + + L Y +QR++DE Sbjct: 465 VADVLENELGLD--IPIAGLAKNDKHQTS-ELLYGETAQVVPLKKNSQAFYLLQRIQDEV 521 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R+K S LD++ GIGP RK LL++FG++K + +S ETL G+ Sbjct: 522 HRFAITFHRQTRQKTGLRSILDQVEGIGPKRKTKLLRTFGSIKKMREASVETLQEA-GLP 580 Query: 597 KKIACKIYNHFHKN 610 KK A ++ + Sbjct: 581 KKTAEVLFKALQEE 594 >gi|322421886|ref|YP_004201109.1| excinuclease ABC subunit C [Geobacter sp. M18] gi|320128273|gb|ADW15833.1| excinuclease ABC, C subunit [Geobacter sp. M18] Length = 614 Score = 488 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 198/623 (31%), Positives = 304/623 (48%), Gaps = 31/623 (4%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTV 62 + P PGVY M G ++YVGKA +L+KR++SY+ + I M+ + ++ + V Sbjct: 8 DNFPSSPGVYLMKTADGSIIYVGKARSLKKRVRSYVGDTRDSRVHIRFMVQLVESVDYLV 67 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EAL+LE +IK+ +P++NI LRDDK++ + + K + P L R + YF Sbjct: 68 TDTEKEALILENTLIKQHRPKYNINLRDDKTYFSLRMDMKEEFPRLSLVRKIPSDGARYF 127 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP++S A ++ + L + F LR + R RPCL +QIK+CS PC G+IS E+Y Sbjct: 128 GPYSSATAAKEVLKQLYKMFPLRHYPLATCVARKRPCLYYQIKQCSAPCCGKISREEYAI 187 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242 A FL G N + MNQA+ + YE A +RD L A+ + Sbjct: 188 LAEGAALFLEGKNTEIARLYRARMNQASREMRYEDAARYRDLLRAIEVTVERQKMVAQGG 247 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DKPCPE 301 D ++ +Q H T D E + L+ FL ++Y D P P Sbjct: 248 DSDVFGLHREGDQMQIALLHIRGGTVTGGRGFLFDWEMETEEGLASFLNEYYDLDAPIPP 307 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 +LL E LE ++ G KV I+ P++G K ++++ A NA + ++L+ E S Sbjct: 308 RVLLPMTIPEPGPLEELLSEKAGKKVTISAPQRGPKLEMVKLAQKNAETASKERLAKEGS 367 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 +L + +K L P+RIE YD S+I G AVG VV + ++ YR++ + Sbjct: 368 SATLLTELAEKLHLTRTPRRIECYDISNIQGEMAVGSRVVFIDGKADRSLYRRYRIKG-- 425 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 V DD AMMR VL RRF E+ PD++++DGG GQL Sbjct: 426 VLQSDDFAMMREVLSRRFKAETTEEQ----------------PDLIVVDGGLGQLGVLNA 469 Query: 482 VLKKLNVENRITIISIAK-GPKRSAGMEK--------FFVKKGEALVLNMRDPILYFIQR 532 VL +L V + +AK R E+ F + + L L + R Sbjct: 470 VLDELGVSG-VEAAGLAKSRVARDMESEEISRSDERVFRPGRKNPVTLRQSSAPLLLLAR 528 Query: 533 LRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDEAHRFA+T H+ R K S LD++ GIG RK+ LL+ FG++K + ++ E L + Sbjct: 529 IRDEAHRFAVTYHKAVRSKILTGSALDQVPGIGAKRKKALLKHFGSLKGVQGATLEELMA 588 Query: 592 IEGISKKIACKIYNHFHKNTSHT 614 G++++ A ++ H Sbjct: 589 APGMTERAARALWEHLQGEGGTA 611 >gi|323489943|ref|ZP_08095164.1| excinuclease ABC subunit C [Planococcus donghaensis MPA1U2] gi|323396239|gb|EGA89064.1| excinuclease ABC subunit C [Planococcus donghaensis MPA1U2] Length = 598 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 181/614 (29%), Positives = 291/614 (47%), Gaps = 41/614 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D V+YVGKA L+ R++SY ++ T + ++++I + + +T + Sbjct: 13 LPDQPGCYLMKDRQDTVIYVGKAKVLKNRVRSYFTGSHDT-KTQRLVNEIVDFEYIITSS 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 + EAL+LE N+IK+ P++NI+L+DDKS+PY+ IT + P L R +G YFGP+ Sbjct: 72 DKEALILELNLIKKYDPKYNIMLKDDKSYPYLKIT-GERHPKLITTRQVKKDKGKYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + A +T L R + LR C R CL + + +C PC I E Y E + Sbjct: 131 PNAYAAAETKKLLDRLYPLRKCHTMP----DRVCLYYHLGQCLAPCVKPIEKETYQELID 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 KFL+GG +KE++ M++A ++E A +RD++ + + N Sbjct: 187 GITKFLNGGFREVKEQLVEKMSEAAENLEFERAKEYRDQINMIETVMEKQKMAMNDFTNR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ +K C+Q F G+ + + + P Sbjct: 247 DVFAYAVDKGWMCVQVFFVRQGKLIERDVSLFPLYRDPEEEFLTFLGQFYEKANHVKPSE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 IL+ E + L E V++ VP++G+K++++ A NA Sbjct: 307 ILIPEADDPDMLKE-------WLGVRVLVPQRGKKKELVALAKKNAEVAIKEKFQLLERQ 359 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E D + + RIE +DNSHI G AV M+ + K YRK+ Sbjct: 360 EERTIGACVDLGEAMNIETPL-RIEAFDNSHIQGADAVSAMITFIDGKPSKKDYRKYKTR 418 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 DD A MR V+ RR+S+++K+ PD++++DGGKGQ+ + Sbjct: 419 NA--SKPDDYAAMREVIRRRYSRVLKDG--------------LPLPDLIVIDGGKGQMES 462 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ +L+ + I I +AK K + E + L Y +QR++DE H Sbjct: 463 AREILED-ELGLSIPIAGLAKDTKHQTSQ-LLYGSPAEIVPLKRTSEAFYLLQRIQDEVH 520 Query: 539 RFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RF IT HR+ R K + S LD + G+GP RK+ LL+ FG+VK I +S E + G+ + Sbjct: 521 RFVITFHRQLRGKNSIQSALDGLQGVGPKRKQQLLKHFGSVKKIKEASVEEIKEA-GMPE 579 Query: 598 KIACKIYNHFHKNT 611 +A I HF ++T Sbjct: 580 ALAQSIEKHFAEDT 593 >gi|94970144|ref|YP_592192.1| excinuclease ABC subunit C [Candidatus Koribacter versatilis Ellin345] gi|119367490|sp|Q1ILY2|UVRC_ACIBL RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|94552194|gb|ABF42118.1| Excinuclease ABC subunit C [Candidatus Koribacter versatilis Ellin345] Length = 610 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 195/625 (31%), Positives = 309/625 (49%), Gaps = 37/625 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 +P PGVY + G ++YVGKA NL+ R+ SY + + ++ + ++ + Sbjct: 6 KIRTLPTSPGVYLYKNAEGEIIYVGKAKNLRSRVGSYFVRGADENSKTGSLLREAVDVEY 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V E EAL LE N+IK+ KPRFNILLRDDK++PYI +T K P +Y R Sbjct: 66 IVVDNEKEALALENNLIKQKKPRFNILLRDDKTYPYIKLTMGEKWPRVYVTRRLKKDGSE 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE-K 179 Y+GPF + + ++ + R F + SC + R+ RPCL I RC GPC +++E + Sbjct: 126 YYGPFFPANLAYRVVDLIHRNFLVPSCYIDLRRYHPRPCLQHYIGRCLGPCVEGLTNEVQ 185 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y E V + K FL G + +LK+ + MN+A +E A +RD + + + Sbjct: 186 YGEAVKDVKLFLEGRHSDLKQSLTARMNKAAEGMQFELAAKYRDLITTVEDLHQKQRIAA 245 Query: 240 ---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNA------QILSYFL 290 + D F ++ ++ + G+ FF + E + S L Sbjct: 246 AEGDDADVFGYHYENHMVAVNLFHMRGGKVLDRRDFFFEDLGEMEATGGLNTGEFFSTLL 305 Query: 291 RQFYTDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH 349 +Q Y D P I + E E+ L +Q K+ I VP++G+KR +I+ NA Sbjct: 306 QQIYLDNKYVPRTIYVPVEFEDREALCEILSEQMHRKIDINVPQRGDKRSLIDLVAQNAK 365 Query: 350 RSHTQKLSTEISHQMILKD-FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 +S+ Q+ +LK LP +P RIE +D SHI G V MVV + Sbjct: 366 QSYDQRFRVMRPQTDVLKSVLQDTLELPELPNRIECFDISHIQGAETVASMVVWEDGKMK 425 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 K+ YRKF + V+ DD A MR V+ RR+ ++++ + P +V+ Sbjct: 426 KSDYRKFIIKT--VQGVDDFASMREVVTRRYKRIVEENQ--------------PMPSLVL 469 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 +DGG GQL AA G L+ + + N+ + SIAK + ++ E + ++ P+L+ Sbjct: 470 IDGGVGQLHAAAGALEAIGITNQ-PLASIAKREEIIY----VHGREDEPIRIDHHSPVLH 524 Query: 529 FIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 IQ +RDEAHRFAIT HRKRR+ + + L EI GIG + LL+ FG+++ I ++ Sbjct: 525 IIQLIRDEAHRFAITFHRKRREIRDRSNELLEIPGIGEQAMKRLLRHFGSIQSIRTANAT 584 Query: 588 TLASIEGISKKIACKIYNHFHKNTS 612 +L ++ +++ A I HF + Sbjct: 585 SLEAV--VNRTQAEAILAHFRAEET 607 >gi|229087074|ref|ZP_04219225.1| UvrABC system protein C [Bacillus cereus Rock3-44] gi|228696218|gb|EEL49052.1| UvrABC system protein C [Bacillus cereus Rock3-44] Length = 594 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 176/611 (28%), Positives = 296/611 (48%), Gaps = 43/611 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 12 LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI L+DDK++P+I IT K P L R+ +G YFGP+ Sbjct: 71 NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T L R + LR C + + CL + + +C PC EI+ E+ E V Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCTNMP----DKVCLYYHMGQCLAPCVKEITDEQNQEIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 KFL+GG+ ++ ++ M +A+ K ++E A RD++A + I I + Sbjct: 186 GIVKFLNGGHKEIRSELEAKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ E + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYEQNNHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 I++ + + + +V +T PK+G+K+ ++E A NA + Sbjct: 306 IVVPGSIDPELV-------ERFLEVNVTQPKRGKKKDLVELASKNAKIALGEKFYLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ K+ + RIE +DNS+I G + V M+V + K +YRK+ + Sbjct: 359 EERTIKAVENLGKQLDIETP-YRIEAFDNSNIQGTNPVSAMIVFIDGKPAKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++ +K PD++++DGGKG L+A Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------LPLPDLIVIDGGKGHLAA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A VL+ +L + I + + K K E ++L Y +QR++DE Sbjct: 462 ASDVLENELGLY--IPMAGLVKDDKHRTSH-LMIGDPPEPVMLERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K+ S LD I G+G RK++LL+ FG++K + +S G+ Sbjct: 519 HRFAITFHRQLHGKSVIQSALDGIPGVGEKRKKVLLKHFGSLKKMKEASVTEFVEA-GMP 577 Query: 597 KKIACKIYNHF 607 + +A IY++ Sbjct: 578 QNVAETIYSYL 588 >gi|288560479|ref|YP_003423965.1| excinuclease ABC C subunit UvrC [Methanobrevibacter ruminantium M1] gi|288543189|gb|ADC47073.1| excinuclease ABC C subunit UvrC [Methanobrevibacter ruminantium M1] Length = 615 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 199/628 (31%), Positives = 331/628 (52%), Gaps = 36/628 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 +++P+ PG+Y M DI ++YVGK+ +L+ R+KSY N + + ++S N++ + V Sbjct: 8 PDELPQKPGIYIMKDINEEIIYVGKSKSLRNRVKSYFQKNLDSPKTKVLMSHFNSLEYIV 67 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EAL+LEAN+IK+ +PR+NI L+DDK +PY+ IT P + R S G+Y+ Sbjct: 68 TNTEKEALILEANLIKKHRPRYNIRLKDDKRYPYVKIT-DEDFPKIVITRTISK-TGTYY 125 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF V AV +T+ L++ F +R+ + PCL QI C PC G+IS E+Y E Sbjct: 126 GPFTDVTAVRQTVKFLKQLFRIRT-----CKRMDGPCLNSQIDLCYAPCDGQISKEEYKE 180 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR- 241 + + F G + + + + M QA +++YE A + RD+++++ + + Sbjct: 181 HIKKIDLFFQGKYNKIIKDLEIEMKQAAERQEYEKAAVIRDQISSIDEVMKKQFVEFEND 240 Query: 242 --MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DKP 298 D ++ + + A G+ G F + +T+ +++S F++Q+Y ++ Sbjct: 241 LDQDIIAIAYTIHNAVAVVMNIRNGKIMGKDDFTMDGSENTTSDEVISAFIKQYYGINRH 300 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P+ +LL E+ + L+E G KV + VP++G K +++ A NA + Sbjct: 301 IPKEVLLEEDIPDKELIEEWLSDLRGNKVSLKVPQKGNKLRLVRMAGKNAEI----IKNQ 356 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + + + + L +P+ IE YD S+I G AVG V + K QY+KF ++ Sbjct: 357 RQKMENSMMELKRYLNLKKLPRVIEGYDISNISGKLAVGSKVSFLDGKPNKKQYKKFKMN 416 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEE-----------NLNFHPKKQEYSFPSWPDVV 467 +D AMM+ +LERR L ++ E N K + P+++ Sbjct: 417 T---PGPNDFAMMKELLERRLKPLKEHYEKVRINEEHTKHNEAETEKIEPLKLGEEPNLI 473 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPIL 527 ++DGGKGQL A VLK+ N+ I II +AK + E + +++ + L Sbjct: 474 VIDGGKGQLGMAVDVLKEYNLT-HIPIIGLAKEFE-----EIYIPNSSFPIIIPQDNEAL 527 Query: 528 YFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586 + +Q++RDE+HRFA+T HRK R K SPLDEI GIG RK LL+ FG I ++S Sbjct: 528 HLLQQVRDESHRFAVTYHRKLRSKKIEESPLDEIEGIGKKRKLELLRHFGDFDSIKKASV 587 Query: 587 ETLASIEGISKKIACKIYNHFHKNTSHT 614 E L ++G+++K+A +YN+FH+ Sbjct: 588 EELKGVDGMNEKVALNVYNYFHEGEKEQ 615 >gi|324328412|gb|ADY23672.1| excinuclease ABC subunit C [Bacillus thuringiensis serovar finitimus YBT-020] Length = 594 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 179/611 (29%), Positives = 299/611 (48%), Gaps = 43/611 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 12 LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI L+DDK++P+I IT K P L R+ +G YFGP+ Sbjct: 71 NLEALILELNLIKKHDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T L R + LR C++ + CL + + +C PC E++ E+ E V Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E KFL+GG+ ++ ++ M +A+ K ++E A RD++A + I I + Sbjct: 186 EIIKFLNGGHKEVRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ E + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 I++ + + + +V+ T PK+G+K+ ++E A NA + Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ K+ + RIE +DNS+I G + V M+ + K +YRK+ + Sbjct: 359 EERTIKAVENLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++ +K PD++I+DGGKG L+A Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEG--------------LPLPDLIIIDGGKGHLAA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A VL+ +L + I + + K K E ++L Y +QR++DE Sbjct: 462 ASDVLENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRVQDEV 518 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K+ S LD+I GIG RK++LL+ FG++K + +S E G+ Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASIEEFVEA-GMP 577 Query: 597 KKIACKIYNHF 607 K +A IY++ Sbjct: 578 KNVAETIYSYL 588 >gi|319647258|ref|ZP_08001480.1| UvrABC system protein C [Bacillus sp. BT1B_CT2] gi|317390605|gb|EFV71410.1| UvrABC system protein C [Bacillus sp. BT1B_CT2] Length = 602 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 184/613 (30%), Positives = 302/613 (49%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D V+YVGKA L+ R++SY + H + ++S+I + + VT + Sbjct: 24 LPDQPGCYLMKDRQDTVIYVGKAKILKNRVRSYFSGS-HDAKTQRLVSEIEDFEYIVTSS 82 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++N++L+DDKS+P+I IT+ + P L R +G YFGP+ Sbjct: 83 NIEALILEMNLIKKYDPKYNVMLKDDKSYPFIKITN-ERHPKLIVTRKVKKDKGRYFGPY 141 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A +T L R + LR CA + R CL + + +C PC ++S E + Sbjct: 142 PNVQAARETKKLLDRLYPLRKCA----KLPDRVCLYYHLGQCLAPCVYDVSEETNRQLTE 197 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E +FL GG + +K+++ M +A+ +E A RD++A + + N M Sbjct: 198 EITRFLKGGYNEVKKELEAKMLEASENLQFERAKEFRDQIAHIESTMEKQKMMLNDMVDR 257 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ ++K C+Q F G+ E+ + + P+ Sbjct: 258 DVFAYSYDKGWMCVQVFFIRQGKLIERDVSMFPLYREADEEFLTFIGQFYSKNNHFLPKE 317 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 IL+ + ++ + E+ V + PK+G K+ ++ A NA + Sbjct: 318 ILVPDSVDKDMIEELL-------DVNVRQPKRGAKKDLLLLAHKNAKLALKEKFSLIERD 370 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E ++ K + + P RIE +DNS+I G V MVV + K +YRK+ + Sbjct: 371 EERTIGAIEKLGKALDI-YTPYRIEAFDNSNIQGTDPVSAMVVFLDGKPHKKEYRKYKIK 429 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++++K PD++++DGGKGQ+SA Sbjct: 430 T--VEGPDDYGSMREVIRRRYTRVLKEN--------------LPLPDLILIDGGKGQVSA 473 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A VL+ +L ++ + + + K K E + L Y +QR++DE Sbjct: 474 ALDVLENELGLD--VPVAGLVKDDKHRTSN-LLIGDPLEIVQLERNSQEFYLLQRIQDEV 530 Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAI+ HR+ R K+A+ S LD I G+G RK+LLL+ FG+VK + +S E + + GI Sbjct: 531 HRFAISFHRQLRGKSAFQSVLDGIPGVGEQRKKLLLKHFGSVKKMKEASAEDIRKL-GIP 589 Query: 597 KKIACKIYNHFHK 609 K A I K Sbjct: 590 LKTAQLIEEALKK 602 >gi|170076867|ref|YP_001733505.1| excinuclease ABC subunit C [Synechococcus sp. PCC 7002] gi|169884536|gb|ACA98249.1| excinuclease ABC, C subunit [Synechococcus sp. PCC 7002] Length = 623 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 193/625 (30%), Positives = 307/625 (49%), Gaps = 42/625 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVT 63 ++P PGVY M G +LY+GK+ L+ R++SY H+ RI M+ Q+ +I F VT Sbjct: 22 EIPTEPGVYFMHSRQGDILYIGKSKTLRNRVRSYFRDARLHSPRIEMMVQQVADIEFIVT 81 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQGSY 121 TE EAL LEAN+IK+ +P +N+LL+DDK +PY+ IT P + R + Y Sbjct: 82 DTEAEALALEANLIKQHQPYYNVLLKDDKKYPYVCITWSEDYPRFFITRKRHIGSKGDRY 141 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GP+ + T+ ++R F LR +F+H RPCL + I RC G C IS ++Y Sbjct: 142 YGPYVDTRLLRHTLGLMKRIFPLRQRRQPLFKH--RPCLNYDIGRCPGVCQQLISPQEYR 199 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + V + G + L E + M QA +E A RD++ A+ + Sbjct: 200 QTVQKVAMVFQGRSGELIETLTAQMAQAAENLQFEKAAQIRDQIKAIGALNADQKVSLPD 259 Query: 242 ----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSES------TNAQILSYFLR 291 D +L +++ IQ G+ G FF +IL + L Sbjct: 260 DRVSRDAIALAADEHHCAIQLFQVRAGRLVGRLGFFTPLPENLGPDLTVEYGKILQHVLE 319 Query: 292 QFYTDKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA 348 Y + P IL+ + LE + G KV+I P++ K +I NA Sbjct: 320 THYANVDGVEIPAEILVQYPLRDQEWLEKFLGDRRGNKVQIRQPQRQLKADLIAMVERNA 379 Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 ++ T + L+D LP +PKRIE YD SHI G +AV VV + Sbjct: 380 QYELSRTQRTATKNLAALEDLASLLDLPELPKRIEGYDISHIQGSNAVASQVVFIDGIPA 439 Query: 409 KNQYRKFNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 K YR + + ++ DD A M ++ RRF + ++ + PD+ Sbjct: 440 KQDYRHYKIKNPEIHIGRSDDFASMAEIMRRRFKKGLEKD----------------CPDL 483 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526 +++DGGKGQLS GVL++LN+ +++ +IS+AK + + + + L P Sbjct: 484 IMIDGGKGQLSTVMGVLEELNLADKLNVISLAKKQE-----QVYLPYESNPLKSEKEQPG 538 Query: 527 LYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 + ++R+RDEAHRFA++ HR++R K + S LD+I G+G RK+ LL F ++ + + Sbjct: 539 IQLLRRVRDEAHRFAVSFHRQQRLKSSRRSQLDDIPGLGHHRKKQLLAHFHSLDYLREAK 598 Query: 586 PETLASIEGISKKIACKIYNHFHKN 610 PE +A ++GI +A +IY++FH + Sbjct: 599 PEQIAEVKGIGSHLAQEIYDYFHPS 623 >gi|196044923|ref|ZP_03112157.1| excinuclease ABC, C subunit [Bacillus cereus 03BB108] gi|196024411|gb|EDX63084.1| excinuclease ABC, C subunit [Bacillus cereus 03BB108] Length = 594 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 179/611 (29%), Positives = 299/611 (48%), Gaps = 43/611 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 12 LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI L+DDK++P+I IT K P L R+ +G YFGP+ Sbjct: 71 NLEALILELNLIKKHDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T L R + LR C++ + CL + + +C PC E++ E+ E V Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E KFL+GG+ ++ ++ M +A+ K ++E A RD++A + I I + Sbjct: 186 EIIKFLNGGHKEVRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ E + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 I++ + + ++ +V+ T PK+G+K+ ++E A NA + Sbjct: 306 IVVPGSIDSELV-------EHFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ K+ + RIE +DNS+I G + V M+ + K +YRK+ + Sbjct: 359 EERTIKAVENLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++ +K PD++I+DGGKG L+A Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------LPLPDLIIIDGGKGHLAA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A VL+ +L + I + + K K E ++L Y +QR++DE Sbjct: 462 ASDVLENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRVQDEV 518 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K+ S LD+I GIG RK++LL+ FG++K + +S E G+ Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASIEEFVEA-GMP 577 Query: 597 KKIACKIYNHF 607 K +A IY + Sbjct: 578 KNVAETIYTYL 588 >gi|49481523|ref|YP_038571.1| excinuclease ABC subunit C [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140985|ref|YP_085846.1| excinuclease ABC subunit C [Bacillus cereus E33L] gi|118479672|ref|YP_896823.1| excinuclease ABC subunit C [Bacillus thuringiensis str. Al Hakam] gi|196034329|ref|ZP_03101738.1| excinuclease ABC, C subunit [Bacillus cereus W] gi|196039346|ref|ZP_03106652.1| excinuclease ABC, C subunit [Bacillus cereus NVH0597-99] gi|218905744|ref|YP_002453578.1| excinuclease ABC, C subunit [Bacillus cereus AH820] gi|225866494|ref|YP_002751872.1| excinuclease ABC, C subunit [Bacillus cereus 03BB102] gi|228929566|ref|ZP_04092585.1| UvrABC system protein C [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935829|ref|ZP_04098641.1| UvrABC system protein C [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948242|ref|ZP_04110526.1| UvrABC system protein C [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093615|ref|ZP_04224716.1| UvrABC system protein C [Bacillus cereus Rock3-42] gi|229124083|ref|ZP_04253275.1| UvrABC system protein C [Bacillus cereus 95/8201] gi|229186752|ref|ZP_04313910.1| UvrABC system protein C [Bacillus cereus BGSC 6E1] gi|81394678|sp|Q6HD05|UVRC_BACHK RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|81686006|sp|Q633S1|UVRC_BACCZ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|189038023|sp|A0RJC3|UVRC_BACAH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|226695571|sp|B7JR24|UVRC_BACC0 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|254764923|sp|C1ETV9|UVRC_BACC3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|49333079|gb|AAT63725.1| excinuclease ABC, subunit C [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974454|gb|AAU16004.1| excinuclease ABC, subunit C [Bacillus cereus E33L] gi|118418897|gb|ABK87316.1| Excinuclease ABC subunit C [Bacillus thuringiensis str. Al Hakam] gi|195992871|gb|EDX56830.1| excinuclease ABC, C subunit [Bacillus cereus W] gi|196029973|gb|EDX68574.1| excinuclease ABC, C subunit [Bacillus cereus NVH0597-99] gi|218539139|gb|ACK91537.1| excinuclease ABC, C subunit [Bacillus cereus AH820] gi|225786564|gb|ACO26781.1| excinuclease ABC, C subunit [Bacillus cereus 03BB102] gi|228596765|gb|EEK54427.1| UvrABC system protein C [Bacillus cereus BGSC 6E1] gi|228659385|gb|EEL15033.1| UvrABC system protein C [Bacillus cereus 95/8201] gi|228689824|gb|EEL43630.1| UvrABC system protein C [Bacillus cereus Rock3-42] gi|228811600|gb|EEM57937.1| UvrABC system protein C [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823886|gb|EEM69706.1| UvrABC system protein C [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830145|gb|EEM75763.1| UvrABC system protein C [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 594 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 179/611 (29%), Positives = 298/611 (48%), Gaps = 43/611 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 12 LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI L+DDK++P+I IT K P L R+ +G YFGP+ Sbjct: 71 NLEALILELNLIKKHDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T L R + LR C++ + CL + + +C PC E++ E+ E V Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E KFL+GG+ ++ ++ M +A+ K ++E A RD++A + I I + Sbjct: 186 EIIKFLNGGHKEVRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ E + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 I++ + + + +V+ T PK+G+K+ ++E A NA + Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ K+ + RIE +DNS+I G + V M+ + K +YRK+ + Sbjct: 359 EERTIKAVENLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++ +K PD++I+DGGKG L+A Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEG--------------LPLPDLIIIDGGKGHLAA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A VL+ +L + I + + K K E ++L Y +QR++DE Sbjct: 462 ASDVLENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRVQDEV 518 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K+ S LD+I GIG RK++LL+ FG++K + +S E G+ Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASIEEFVEA-GMP 577 Query: 597 KKIACKIYNHF 607 K +A IY + Sbjct: 578 KNVAETIYTYL 588 >gi|313891874|ref|ZP_07825479.1| excinuclease ABC, C subunit [Dialister microaerophilus UPII 345-E] gi|313119868|gb|EFR43055.1| excinuclease ABC, C subunit [Dialister microaerophilus UPII 345-E] Length = 617 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 202/623 (32%), Positives = 328/623 (52%), Gaps = 38/623 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 E +P PGVY+ D G+V+YVGKA NL+ R+KSY+ ++ N + ++ MI ++ Sbjct: 11 KLENLPSSPGVYRWKDKNGKVIYVGKAVNLKNRVKSYVRNDKNKSPKVISMIKHAEDLDI 70 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQG 119 T+T E+EAL+LE N+IK L+P++NI LRDDK++PY+ +T K P +Y R+ Sbjct: 71 TITKNELEALILECNLIKELQPKYNISLRDDKTYPYLKVTVNEKWPRIYITRNIKRTDGA 130 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 YFGPF V ++ KT+ + + + +R+C + + TRPCL + I CS PC +S EK Sbjct: 131 RYFGPFTDVSSLRKTLKIVGKYYPIRTCRNM---NVTRPCLQYHINLCSAPCCNLVSQEK 187 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y E+V + G ++ + + + M +A+ +E A ++RD + A+ +Q + + Sbjct: 188 YNEYVKKLCNIFEGKSYEIIKTLKEKMKEASENLQFEKAAMYRDEINAVKSVQQRQNIVS 247 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-- 295 D + +N A + + +G+ G F + + + I++ FL+ FY+ Sbjct: 248 KEGDFDVIGMARTENYAAFEIFYIRYGRMVGKENFNISGTEDERDESIIAAFLKNFYSSD 307 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRS 351 + P+ I++S+ E+ L++ V + VP++G KRK+ E A++NA Sbjct: 308 NINIPKEIIISKIPEDFELIKKWLSGIRHNDVSLIVPERGFKRKLKEMAIVNATKYLSDK 367 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 Q ++ Q L + LP IP+RIE +D SH G G MVV K Sbjct: 368 KIQWEHQKMREQGALIKLKEILKLPKIPERIECFDISHNQGSETTGSMVVFVNGRPEKKA 427 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YRKF L DD M V+ERR++ + PD+++LDG Sbjct: 428 YRKFKLKTTQG-KPDDFKSMAEVMERRYN----------------DKKIGRNPDLIVLDG 470 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GKGQL+AA +++K VE T+I +AK + E + + E +V++ D +L+ +Q Sbjct: 471 GKGQLNAAIPLIRKSGVEA--TVIGLAKRME-----EIYLENQTEPIVIDRHDEVLHLLQ 523 Query: 532 RLRDEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDE+HRF I HR+ K+ S LD I GIGP+R++ L +F T+ + ++S E L Sbjct: 524 FVRDESHRFVINYHRQWISKRNRESILDHIEGIGPVRRKNLWAAFRTLDEMKKASVEELQ 583 Query: 591 SIEGISKKIACKIYNHFHKNTSH 613 ++GI+KK+A IYN F Sbjct: 584 KVKGINKKVAENIYNFFRMKKDE 606 >gi|229098976|ref|ZP_04229911.1| UvrABC system protein C [Bacillus cereus Rock3-29] gi|229105143|ref|ZP_04235794.1| UvrABC system protein C [Bacillus cereus Rock3-28] gi|228678324|gb|EEL32550.1| UvrABC system protein C [Bacillus cereus Rock3-28] gi|228684474|gb|EEL38417.1| UvrABC system protein C [Bacillus cereus Rock3-29] Length = 594 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 177/611 (28%), Positives = 294/611 (48%), Gaps = 43/611 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 12 LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI L+DDK++P+I IT K P L R+ +G YFGP+ Sbjct: 71 NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T L R + LR C++ + CL + + +C PC E++ E+ E V Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E KFL+GG+ ++ ++ M +A+ K ++E A RD++A + I I + Sbjct: 186 EIIKFLNGGHKEIRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ E + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 I++ + + + +V+ T PK+G+K+ ++E A NA + Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E + K+ + RIE +DNS+I G + V M+ + K +YRK+ + Sbjct: 359 EERTIKAVDQLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++ +K PD++I+DGGKG L+A Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------LPLPDLIIIDGGKGHLAA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 VL+ +L + I + + K K E ++L Y +QR++DE Sbjct: 462 VSDVLENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVILERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K+ S LD+I GIG RK++LL+ FG++K + +S G+ Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASVAEFVEA-GMP 577 Query: 597 KKIACKIYNHF 607 K +A IY + Sbjct: 578 KNVAETIYTYL 588 >gi|258511831|ref|YP_003185265.1| excinuclease ABC, C subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478557|gb|ACV58876.1| excinuclease ABC, C subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 610 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 185/617 (29%), Positives = 304/617 (49%), Gaps = 42/617 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+ PGVY M G +LYVGKA L+ R++SY + T + ++SQI + + Sbjct: 8 KLDLLPQRPGVYLMKGEGGEILYVGKAKVLRNRVRSYFTGTHDT-KTQVLVSQIRDFEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT T EALLLE N+IK+ +P +NI+LRDDKS+PYI +T K + P L R Y Sbjct: 67 VTDTVAEALLLECNLIKQHQPPYNIMLRDDKSYPYIKLT-KERHPRLQIVRQVKRDGAKY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + + + T L R + LR C + + CL + I +C PC ++ Y Sbjct: 126 FGPYPNATSAQATKRLLDRLYPLRKCKTL----KKQVCLYYHIHQCLAPCVYDVDEATYE 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 E FL+GG+ ++ ++ + M A ++E A RD + + + + Sbjct: 182 AMAKEISHFLNGGHQDVVRELEQKMQAAAESLEFERAAELRDLIRHIEQVMQEQKVTWTD 241 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F ++ L +Q F G+ + +S+ + ++ Sbjct: 242 GIDRDVFGFAEDRGLLSVQVFFVRNGKLIERQVQIAPH-FDDPLTDFMSFVEQFYHERVD 300 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS- 357 P+ ILL E +L + K + PK+G KR +++ A NA ++ +K+ Sbjct: 301 LPKEILLPEGVPSEALAMVVDAK-------VLQPKRGPKRDLVDLACENARQALAEKIQL 353 Query: 358 TEISHQMILKDFTKKFAL--PHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 + + L + + P+RIE +DNS+ G AV MVV + K++YRK+ Sbjct: 354 IDRNLDRTLGAVMELGQVLAIQPPRRIEAFDNSNFQGVDAVSAMVVFIDGKPAKSEYRKY 413 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 + + DD +R V+ RR+S+L++ ++ L PD+V++DGGKGQ Sbjct: 414 KIRST--QGPDDYEAIREVVRRRYSRLVREQKPL--------------PDLVVIDGGKGQ 457 Query: 476 LSAAQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 L AA VL+ +L +E I + +AK + FF+ + E + + P Y ++R++ Sbjct: 458 LRAALSVLEGELGLE--IPVCGLAKDERHRTSQ-LFFMDEEEPVRIERHSPAFYLLERIQ 514 Query: 535 DEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFA+ HR RR K S LDEI G+GP RK+ +L+ FG++K ++ + PE + Sbjct: 515 DEVHRFAVEFHRLRRSKTGFQSILDEIPGVGPERKKAILRRFGSLKAVAAAQPEDFRGL- 573 Query: 594 GISKKIACKIYNHFHKN 610 GI K+A +I + Sbjct: 574 GIGDKLAREIVARVREE 590 >gi|228993251|ref|ZP_04153167.1| UvrABC system protein C [Bacillus pseudomycoides DSM 12442] gi|228766319|gb|EEM14962.1| UvrABC system protein C [Bacillus pseudomycoides DSM 12442] Length = 594 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 173/611 (28%), Positives = 296/611 (48%), Gaps = 43/611 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 12 LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI L+DDK++P+I IT K P L R+ +G YFGP+ Sbjct: 71 NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T L R + LR C + + CL + + +C PC E++ E+ E V Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCTNIP----DKVCLYYHMGQCLAPCVQEVTDEQNQEIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 KFL+GG+ ++ ++ M +A+ K ++E A RD+++ + I I + Sbjct: 186 GIVKFLNGGHKEVRSELEAKMYEASEKLEFERAKELRDQISHIDAIMEKQKMIMSDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ E + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYEQNNHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 I++ + + + +V +T PK+G+K+ ++E A NA + Sbjct: 306 IVVPGSIDPELV-------ERFLEVDVTQPKRGKKKDLVELANKNAKIALGEKFYLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ K+ + RIE +DNS+I G + V M+V + K +YRK+ + Sbjct: 359 EERTIKAVENLGKQLDIETP-YRIEAFDNSNIQGTNPVSAMIVFIDGKPAKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++ +K PD++++DGGKG L+A Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------LPLPDLIVIDGGKGHLAA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A VL+ +L + I + + K K + ++L Y +QR++DE Sbjct: 462 ASDVLENELGLY--IPMAGLVKDDKHRTSH-LMIGDPPDPVMLERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K+ S LD I G+G RK++LL+ FG++K + +S G+ Sbjct: 519 HRFAITFHRQLHGKSVIQSALDGIPGVGEKRKKVLLKHFGSLKKMKEASVTEFVEA-GMP 577 Query: 597 KKIACKIYNHF 607 + +A IY++ Sbjct: 578 QNVAETIYSYL 588 >gi|222097986|ref|YP_002532043.1| excinuclease abc subunit c [Bacillus cereus Q1] gi|254764924|sp|B9J024|UVRC_BACCQ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|221242044|gb|ACM14754.1| excinuclease ABC, subunit C [Bacillus cereus Q1] Length = 594 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 177/611 (28%), Positives = 298/611 (48%), Gaps = 43/611 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 12 LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI L+DDK++P+I IT K P L R+ +G YFGP+ Sbjct: 71 NLEALILELNLIKKHDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T L R + LR C++ + CL + + +C PC E++ E+ E V Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E KFL+GG+ ++ ++ M +A+ K ++E A RD++A + I I + Sbjct: 186 EIIKFLNGGHKEVRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ E + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 I++ + + + +V+ T PK+G+K+ ++E A NA + Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ ++ + RIE +DNS+I G + V M+ + K +YRK+ + Sbjct: 359 EERTIKAVENLGEQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++ +K PD++I+DGGKG L+A Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEG--------------LPLPDLIIIDGGKGHLAA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A VL+ +L + I + + K K E ++L Y +QR++DE Sbjct: 462 ASDVLENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K+ S LD+I GIG RK++LL+ FG++K + +S G+ Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKILLKHFGSLKKMKEASVTEFVEA-GMP 577 Query: 597 KKIACKIYNHF 607 K +A IY++ Sbjct: 578 KNVAETIYSYL 588 >gi|332879142|ref|ZP_08446843.1| excinuclease ABC, C subunit [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682942|gb|EGJ55838.1| excinuclease ABC, C subunit [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 593 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 187/623 (30%), Positives = 302/623 (48%), Gaps = 53/623 (8%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + +P PG+YQ D ++YVGKA NL+KR+ SY + + ++ +I I Sbjct: 5 LQLQTLPTSPGIYQFYDDTDILIYVGKAINLKKRVSSYFQKTHDNAKTRVLVKKIVRIEH 64 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE +ALLLE N+IK+ +PR+N+LL+DDKS+P+I + K + P ++ R Sbjct: 65 IVVATESDALLLENNLIKKYQPRYNVLLKDDKSYPWICV-KKERFPRVFSTRRIVKDGSL 123 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEI 175 YFGP+ S+ V ++ ++ F LR+C ++ H+ + CL + +K C GPC G Sbjct: 124 YFGPYTSMKTVHTLLDLIKELFPLRNCTYDLSPQNIANHKFKVCLEYHLKNCKGPCEGLQ 183 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 + E Y + + + L G + MN + +E A + + ++ +L + Q + Sbjct: 184 TEEDYNNNIQQIVEILKGNFKEALTRFKEEMNVLATEMRFEEAHLIKQKITSLENYQAKS 243 Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 + +D FS+ ++ + +G T +K E T+ ++L Y + Sbjct: 244 TIVSSKISNVDVFSIVSDEEYGYVNFLQVAYGAIVRAHTLEIKKKLEETDRELLEYAIID 303 Query: 293 FYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 + I+ E + +++T+PK GEK++++E ++ NA Sbjct: 304 IRERFYSTSKEIITPFEVTLSE------------GLQLTIPKAGEKKQLLELSVRNAKHF 351 Query: 352 HTQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405 ++ E IL + L P IE +DNS+I G + V VV Sbjct: 352 RQERFKQEKIVDPERHTNRILTQMQRDLHLSVPPVHIECFDNSNIQGTNPVSACVVFKNA 411 Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465 K YR FN+ V+ +D A M + RR+ +L+ ++L P Sbjct: 412 KPSKKDYRHFNVKT--VEGPNDFASMEEAVYRRYRRLLDEGQSL--------------PQ 455 Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525 ++I+DGGKGQLS+A L++L + +I II IAK + E +F + L L+ R Sbjct: 456 LIIIDGGKGQLSSALKALEQLELRGKIAIIGIAKRLE-----EIYFPEDSVPLYLDKRSE 510 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 L IQ+LRDEAHRF IT HR++R K+ S LD I GIG ++LLLQ F +VK I + Sbjct: 511 TLRVIQQLRDEAHRFGITFHRQKRSKSAIVSELDSIEGIGEKTQKLLLQHFKSVKRIQEA 570 Query: 585 SPETLASIEGISKKIACKIYNHF 607 S E L + G A K+Y HF Sbjct: 571 SLEDLTKVIG---HRAKKVYEHF 590 >gi|152979382|ref|YP_001345011.1| excinuclease ABC subunit C [Actinobacillus succinogenes 130Z] gi|189038015|sp|A6VQ29|UVRC_ACTSZ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|150841105|gb|ABR75076.1| excinuclease ABC, C subunit [Actinobacillus succinogenes 130Z] Length = 608 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 209/619 (33%), Positives = 335/619 (54%), Gaps = 32/619 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PGVY+M D V+YVGKA +L+KR+ SY N + + +++ I I T+ Sbjct: 8 LKNVPHDPGVYRMFDKTDTVIYVGKAKDLKKRLSSYFRPNLSSKKTEALVASITRIETTI 67 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EALLLE N IK +PR+N+LLRDDKS+PYIL+T K + P + +R + IQG YF Sbjct: 68 TTSETEALLLEHNYIKTFQPRYNVLLRDDKSYPYILLT-KERHPRIAAYRGAKKIQGEYF 126 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYM 181 GP+ AV +T++ LQ+ F +R C +SV+++R+RPCL +QI RC PC ++ E+Y Sbjct: 127 GPYPHAGAVRETLSLLQKLFPIRQCENSVYKNRSRPCLQYQIGRCCAPCVAGYVTDEEYQ 186 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---I 238 V A+ FL G + + + + M A+ D+E+A RD++ A+ + Sbjct: 187 AQVEYARLFLQGKDQQVLDHLIAKMETASRALDFENAARFRDQIQAVRAVIEKQFVSNDR 246 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY---- 294 + MD S+ + +AC+Q F G+ G ++F K + + +++ + F+ QFY Sbjct: 247 LDDMDIISIAYRHGVACVQVLFIRQGKVLGNRSYFPKVPANTDLSELTATFVGQFYLQAH 306 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 + P +I++ + E +E +Q G KV I +G K K + A +NA + T Sbjct: 307 QGRTVPNSIVVDHKLEAKEEIEQLLSEQAGRKVSIQDNAKGSKSKYLSLAQMNAKAALTL 366 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 KL + + + R+E +D SH MG + VV + G K++YR+ Sbjct: 367 KLKESTLISERYRALRELLDMD-KINRMECFDISHTMGEQTIASCVVFNDAGPFKSEYRR 425 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 FN+ + DD A M L++R+ + + E+ PD++ +DGGKG Sbjct: 426 FNIEG--ITGGDDYAAMEQALKKRYDRDLTPEK---------------IPDIIFIDGGKG 468 Query: 475 QLSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFI 530 QL+ A +LNV +NR +I IAKG R AG E + K G + L+ + L+ I Sbjct: 469 QLNRALKAFGELNVKWDKNRPHLIGIAKGVDRRAGQETLILSKTGREVNLDPDNLALHLI 528 Query: 531 QRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 Q +RDE+H AI+ HRK+R+KA S L+ I G+GP R++ LL+ G ++ + ++ E + Sbjct: 529 QHIRDESHNHAISGHRKKRQKAFTQSGLETIEGVGPKRRQALLKYLGGMQGVKNATLEEI 588 Query: 590 ASIEGISKKIACKIYNHFH 608 AS+ GIS+ +A I+ Sbjct: 589 ASVPGISRALAEIIFETLK 607 >gi|288905128|ref|YP_003430350.1| excinuclease ABC (subunit C) [Streptococcus gallolyticus UCN34] gi|288731854|emb|CBI13419.1| excinuclease ABC (subunit C) [Streptococcus gallolyticus UCN34] Length = 599 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 172/619 (27%), Positives = 294/619 (47%), Gaps = 40/619 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D G ++YVGKA NL+ R++SY H +++T + ++S+I + + Sbjct: 8 KLELLPDSPGCYIHKDKNGTIIYVGKAKNLKNRVRSYFHGSHNT-KTELLVSEIEDFEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + EALLLE N+I+ P++NI L+DDKS+P+I IT + P L R Y Sbjct: 67 VTGSNTEALLLEINLIQENMPKYNIKLKDDKSYPFIKITTNEQYPRLMITRQIKKDGAMY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ A + L R F + C + + C + + +C + + ++ Sbjct: 127 FGPYPDSGAATEIKRLLDRIFPFKKCTNP----ANKVCFYYHLGQCKAHTICHVDHDYFV 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + H+ K FL+G ++ + +++ M +A+ ++E A +RD L A+S ++ + Sbjct: 183 DMAHDVKNFLNGQDNKIVDQLKDKMQKASDLMEFERAAEYRDLLQAISTLRTKQRVMSQD 242 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 M D F Y +K C+Q F G+ ++ + Sbjct: 243 MMDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDPEEDFLTYMGQFYRDNKHF 302 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ I + +E +E + I K P++GEK++++ A+ NA + Sbjct: 303 IPKEIFIPKEIDEELVKAIVDTKIIK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 355 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +++ + +P RIE +DNS+I G S V MVV K YRK Sbjct: 356 LEKDVKKTYGAVENIGELLNIPKPV-RIEAFDNSNIQGTSPVAAMVVFVNGKPSKKDYRK 414 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + V DD A MR V+ RR+S+++K+ PD++I+DGG+G Sbjct: 415 FKIKT--VVGPDDYASMREVIYRRYSRVMKDG--------------LVPPDLIIIDGGQG 458 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+ + + I I + K K E F E + L + +QR++ Sbjct: 459 QVNVARDVI-ENKLGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELPRNSEEFFLLQRIQ 516 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+LL++ F ++ I ++ + + + Sbjct: 517 DEVHRFAITFHRQVRSKNSFSSKLDGIAGLGPKRKQLLMKHFKSLPNIQKADIDDIVN-C 575 Query: 594 GISKKIACKIYNHFHKNTS 612 GI + +A I + + Sbjct: 576 GIPRNVATAIKEKLSEEEA 594 >gi|226951808|ref|ZP_03822272.1| nuclease subunit of the excinuclease complex [Acinetobacter sp. ATCC 27244] gi|226837348|gb|EEH69731.1| nuclease subunit of the excinuclease complex [Acinetobacter sp. ATCC 27244] Length = 599 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 191/605 (31%), Positives = 304/605 (50%), Gaps = 30/605 (4%) Query: 10 PGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEA 69 PGVY+ML G +LYVGKA NL+ R+ SY + ++++I +I V +E EA Sbjct: 20 PGVYKMLGKDGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVARIYDIETLVVRSETEA 79 Query: 70 LLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFGPFASV 128 LLLE N+IK +P +NI+LRDDKS+ YI ++ P + R Q G +FGP+ S Sbjct: 80 LLLEQNLIKLHRPPYNIMLRDDKSYVYIFVSADKPYPRIASGRGKGKHQIGKFFGPYPSA 139 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 + T+ +LQ+ F +R C +S F R RPCL +QIKRC+ PC G IS E Y E V+ + Sbjct: 140 YSARDTLLTLQKLFNVRQCENSYFSQRKRPCLQYQIKRCTAPCVGLISPEDYKEDVNNSI 199 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246 +FL G L +++ M QA ++E A+ +RDRL+ L +Q D + Sbjct: 200 RFLQGDTKELNQELIGKMEQAAEALEFEKAVFYRDRLSLLREVQAQQAVFKIKGEADILA 259 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DKPCPENILL 305 + H + C+Q + GQ G ++F + + + ++ P +++ Sbjct: 260 IAHQAGVTCVQIMYVRNGQMLGGKSYFPDMLGDDLGQMLSDFIANFYFQVADEIPVELIV 319 Query: 306 SEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365 + E + LE + + + K++I + + + E A +N + KLS + Sbjct: 320 NLEVPDKKQLEEALQQTFNKKIQIKHKVRETRAEWQELAQMNVQHAIKGKLSNHLELNER 379 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 + P IE +D SH MG + + VV + G K YR+F + + Sbjct: 380 FHQLEQVVGRPIDR--IECFDISHTMGEAPIASCVVFDQGGARKRDYRQFAIQD--ITGG 435 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD A MR L RR+ + + PD++++DGGKGQL A V+++ Sbjct: 436 DDYAAMRQALIRRYKKNM-------------------LPDLLLIDGGKGQLHMAMEVMQE 476 Query: 486 LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545 L ++ +I ++KG R G+E G + L L+ IQ++RDEAHRFAIT H Sbjct: 477 LELDAF--MIGVSKGEGRKPGLETLHFTDGTKIQLAEDHKALHLIQQVRDEAHRFAITRH 534 Query: 546 RKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 R +R K+ + S L+ I G+GP R+R LL FG ++ + +S + L + G+ + +A IY Sbjct: 535 RAKRDKRRSSSVLEAIPGLGPKRRRDLLTHFGGIQGVLNASEKKLTLVPGLGEVMARTIY 594 Query: 605 NHFHK 609 H+ Sbjct: 595 KILHE 599 >gi|291569735|dbj|BAI92007.1| excinuclease ABC subunit C [Arthrospira platensis NIES-39] Length = 624 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 205/630 (32%), Positives = 305/630 (48%), Gaps = 39/630 (6%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIR 59 M +++P PGVY M D +LY+GK+ L+ R++SY +NH+HRI MI Q+ +I Sbjct: 15 MRLKEIPPVPGVYFMKDGNENILYIGKSKKLRSRVRSYFRDRHNHSHRINLMIQQVTDIE 74 Query: 60 FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS--STI 117 F VT TE EAL LEA++IK +P FN+LL+DDK +PY+ IT P ++ R S Sbjct: 75 FIVTDTEAEALALEAHLIKTHQPHFNVLLKDDKKYPYLCITWSEPYPRIFITRKRSLSNP 134 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 + Y+GP+ + + ++R F LR +F + RPCL + I RC G C IS Sbjct: 135 KDRYYGPYVDTGLLRSNLQLIKRLFPLRQRPKPLF--KDRPCLNYDIGRCPGVCQEMISP 192 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E Y + V + G L E + M QA + ++E+A RDRL L + Sbjct: 193 EDYHQIVQKVAMVFQGRTEELIENLTAQMQQAAAELNFETAAKLRDRLQGLQSLNQDQKV 252 Query: 238 IYNRM----DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSES------TNAQILS 287 D +L + A +Q G G FF K I+ Sbjct: 253 SLPDETVSLDAIALATDGQQASVQLFQIRAGHLVGRLGFFAKVYPTEKALTSLELGLIIQ 312 Query: 288 YFLRQFYTDKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344 L++ Y P I L + L+ + G KV + P++ K +IE Sbjct: 313 RVLQEHYQTVDPVEIPREIFLQYSLPDADLVTDWLSDRKGRKVTLITPQRQSKLDLIEMV 372 Query: 345 LINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGE 404 NA+ + H L+D T+ LP +P RIE YD SHI G AV VV + Sbjct: 373 ERNANYELMRVQKLSDRHHQSLQDLTEILDLPDLPHRIEGYDISHIQGSDAVASRVVFID 432 Query: 405 NGFVKNQYRKFNLHPNDVKT--QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPS 462 K YR++ + +V + DD A + V+ RRF Sbjct: 433 GLPAKQHYRQYKIKNPNVHSGRSDDFASLAEVIGRRFRDY-------------HNLEPQD 479 Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522 PD++++DGGKGQLSA VL+ L++ + +IS+AK + E F + + L N Sbjct: 480 KPDLIMIDGGKGQLSAVVKVLQDLDILEELKVISLAKRRE-----EIFVPGESQPLTTNP 534 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMI 581 P + ++RLRDEAHRFA++ HR +R K S LD+I G+G R++LLL F ++ I Sbjct: 535 EQPGVELLRRLRDEAHRFAVSFHRNQRSKRMKRSHLDDIPGLGHHRQKLLLGHFRSIDYI 594 Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNT 611 ++P LA + GI +K+A +IY++FH +T Sbjct: 595 RIATPTQLAEVNGIGEKLAQQIYDYFHPST 624 >gi|30264586|ref|NP_846963.1| excinuclease ABC subunit C [Bacillus anthracis str. Ames] gi|47530056|ref|YP_021405.1| excinuclease ABC subunit C [Bacillus anthracis str. 'Ames Ancestor'] gi|49187411|ref|YP_030663.1| excinuclease ABC subunit C [Bacillus anthracis str. Sterne] gi|65321885|ref|ZP_00394844.1| COG0322: Nuclease subunit of the excinuclease complex [Bacillus anthracis str. A2012] gi|165871485|ref|ZP_02216132.1| excinuclease ABC, C subunit [Bacillus anthracis str. A0488] gi|167635615|ref|ZP_02393927.1| excinuclease ABC, C subunit [Bacillus anthracis str. A0442] gi|167641662|ref|ZP_02399907.1| excinuclease ABC, C subunit [Bacillus anthracis str. A0193] gi|170688237|ref|ZP_02879447.1| excinuclease ABC, C subunit [Bacillus anthracis str. A0465] gi|170708324|ref|ZP_02898768.1| excinuclease ABC, C subunit [Bacillus anthracis str. A0389] gi|177653110|ref|ZP_02935397.1| excinuclease ABC, C subunit [Bacillus anthracis str. A0174] gi|190566893|ref|ZP_03019809.1| excinuclease ABC, C subunit [Bacillus anthracis Tsiankovskii-I] gi|227817301|ref|YP_002817310.1| excinuclease ABC, C subunit [Bacillus anthracis str. CDC 684] gi|229604481|ref|YP_002868799.1| excinuclease ABC, C subunit [Bacillus anthracis str. A0248] gi|254686991|ref|ZP_05150849.1| excinuclease ABC subunit C [Bacillus anthracis str. CNEVA-9066] gi|254724554|ref|ZP_05186337.1| excinuclease ABC subunit C [Bacillus anthracis str. A1055] gi|254736623|ref|ZP_05194329.1| excinuclease ABC subunit C [Bacillus anthracis str. Western North America USA6153] gi|254741661|ref|ZP_05199348.1| excinuclease ABC subunit C [Bacillus anthracis str. Kruger B] gi|254754741|ref|ZP_05206776.1| excinuclease ABC subunit C [Bacillus anthracis str. Vollum] gi|254757573|ref|ZP_05209600.1| excinuclease ABC subunit C [Bacillus anthracis str. Australia 94] gi|81581242|sp|Q81L74|UVRC_BACAN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|254764921|sp|C3PAA9|UVRC_BACAA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|254764922|sp|C3L7X5|UVRC_BACAC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|30259244|gb|AAP28449.1| excinuclease ABC, C subunit [Bacillus anthracis str. Ames] gi|47505204|gb|AAT33880.1| excinuclease ABC, C subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|49181338|gb|AAT56714.1| excinuclease ABC, C subunit [Bacillus anthracis str. Sterne] gi|164712782|gb|EDR18312.1| excinuclease ABC, C subunit [Bacillus anthracis str. A0488] gi|167510369|gb|EDR85770.1| excinuclease ABC, C subunit [Bacillus anthracis str. A0193] gi|167529035|gb|EDR91790.1| excinuclease ABC, C subunit [Bacillus anthracis str. A0442] gi|170126699|gb|EDS95582.1| excinuclease ABC, C subunit [Bacillus anthracis str. A0389] gi|170667743|gb|EDT18496.1| excinuclease ABC, C subunit [Bacillus anthracis str. A0465] gi|172081634|gb|EDT66705.1| excinuclease ABC, C subunit [Bacillus anthracis str. A0174] gi|190561884|gb|EDV15853.1| excinuclease ABC, C subunit [Bacillus anthracis Tsiankovskii-I] gi|227005799|gb|ACP15542.1| excinuclease ABC, C subunit [Bacillus anthracis str. CDC 684] gi|229268889|gb|ACQ50526.1| excinuclease ABC, C subunit [Bacillus anthracis str. A0248] Length = 594 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 179/611 (29%), Positives = 298/611 (48%), Gaps = 43/611 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 12 LPDQPGCYLMKDRQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI L+DDK++P+I IT K P L R+ +G YFGP+ Sbjct: 71 NLEALILELNLIKKHDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T L R + LR C++ + CL + + +C PC E++ E+ E V Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E KFL+GG+ ++ ++ M +A+ K ++E A RD++A + I I + Sbjct: 186 EIIKFLNGGHKEVRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ E + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 I++ + + + +V+ T PK+G+K+ ++E A NA + Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ K+ + RIE +DNS+I G + V M+ + K +YRK+ + Sbjct: 359 EERTIKAVENLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++ +K PD++I+DGGKG L+A Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEG--------------LPLPDLIIIDGGKGHLAA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A VL+ +L + I + + K K E ++L Y +QR++DE Sbjct: 462 ASDVLENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRVQDEV 518 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K+ S LD+I GIG RK++LL+ FG++K + +S E G+ Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASIEEFVEA-GMP 577 Query: 597 KKIACKIYNHF 607 K +A IY + Sbjct: 578 KNVAETIYTYL 588 >gi|327439315|dbj|BAK15680.1| nuclease subunit of the excinuclease complex [Solibacillus silvestris StLB046] Length = 596 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 175/616 (28%), Positives = 287/616 (46%), Gaps = 41/616 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P G Y M D G ++YVGKA L+ R++SY + H + ++S+I + + Sbjct: 8 KLEILPNESGCYIMKDRQGTIIYVGKAKVLKNRVRSYFTGS-HDGKTARLVSEIEDFEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT +++EAL+LE N+IK P++N+ L DDK++PYI IT+ + P + R + Y Sbjct: 67 VTSSDLEALILELNLIKLHDPKYNVKLTDDKTYPYIKITN-ERYPRIITTRKVKKDKAKY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + A +T L R + LR C + CL + + +C PC +I + Y Sbjct: 126 FGPYPNAYAANETRKLLDRLYPLRKCTHLPNQ----VCLYYHLGQCLAPCVKDIEKQVYD 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + E KFL+GG +K+ + + M A ++E A RD +A + I + + Sbjct: 182 VMIDEISKFLNGGVEEIKQDLQQKMIDAAENLEFERAKEFRDLIAHIDQIMEKQKIVTDD 241 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F K C+Q F G+ +E + Sbjct: 242 LSNRDVFGYAVEKGWMCVQVFFVRQGKLIERDVSIFPIYNEPEEEFLTFVGRFYEQPHHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P+ I + + + T L ++ K PK+G K+++++ A+ NA + +K Sbjct: 302 LPKEIFVPKSIDVTILQKLLDVKVVT-------PKRGSKKELVDLAMKNAEIAIHEKFQL 354 Query: 359 EISHQMIL----KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + + + +P RIE +DNSH+ G V MVV + K +YRK Sbjct: 355 IERQEERTVGACEALAEAMQIPLPL-RIEAFDNSHMHGADPVSAMVVFIDGKPAKKEYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + DD M+ V+ RR++++++ PD++++DGGKG Sbjct: 414 YKTREA--AKHDDYGAMQEVIRRRYTRVLREN--------------LPLPDLILIDGGKG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q+ A+ V++ + I I +AK K + F E + L Y +QR++ Sbjct: 458 QMEVAREVIED-ELGLVIPIAGLAKDEKHNTSQ-LLFGTPPEVVPLKRTSDGFYLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT R++ + A S LD I G+GP RK+ L++ FG+VK I +S L Sbjct: 516 DEVHRFAITFLRQQHQTNAITSVLDGIEGVGPKRKQQLMKHFGSVKKIREASELQLQE-S 574 Query: 594 GISKKIACKIYNHFHK 609 G+ K+A IY HFH+ Sbjct: 575 GVPAKLAEVIYRHFHE 590 >gi|206977739|ref|ZP_03238630.1| excinuclease ABC, C subunit [Bacillus cereus H3081.97] gi|217962003|ref|YP_002340573.1| excinuclease ABC subunit C [Bacillus cereus AH187] gi|229141250|ref|ZP_04269789.1| UvrABC system protein C [Bacillus cereus BDRD-ST26] gi|229198668|ref|ZP_04325369.1| UvrABC system protein C [Bacillus cereus m1293] gi|226695574|sp|B7HRG3|UVRC_BACC7 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|206744040|gb|EDZ55456.1| excinuclease ABC, C subunit [Bacillus cereus H3081.97] gi|217064552|gb|ACJ78802.1| excinuclease ABC, C subunit [Bacillus cereus AH187] gi|228584827|gb|EEK42944.1| UvrABC system protein C [Bacillus cereus m1293] gi|228642291|gb|EEK98583.1| UvrABC system protein C [Bacillus cereus BDRD-ST26] Length = 594 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 178/611 (29%), Positives = 298/611 (48%), Gaps = 43/611 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 12 LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI L+DDK++P+I IT K P L R+ +G YFGP+ Sbjct: 71 NLEALILELNLIKKHDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T L R + LR C++ + CL + + +C PC E++ E+ E V Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E KFL+GG+ ++ ++ M +A+ K ++E A RD++A + I I + Sbjct: 186 EIIKFLNGGHKEVRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ E + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 I++ + + + +V+ T PK+G+K+ ++E A NA + Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ K+ + RIE +DNS+I G + V M+ + K +YRK+ + Sbjct: 359 EERTIKAVENLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++ +K PD++I+DGGKG L+A Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEG--------------LPLPDLIIIDGGKGHLAA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A VL+ +L + I + + K K E ++L Y +QR++DE Sbjct: 462 ASDVLENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K+ S LD+I GIG RK++LL+ FG++K + +S G+ Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKILLKHFGSLKKMKEASVTEFVEA-GMP 577 Query: 597 KKIACKIYNHF 607 K +A IY++ Sbjct: 578 KNVAETIYSYL 588 >gi|262375174|ref|ZP_06068408.1| excinuclease ABC, C subunit [Acinetobacter lwoffii SH145] gi|262310187|gb|EEY91316.1| excinuclease ABC, C subunit [Acinetobacter lwoffii SH145] Length = 599 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 195/610 (31%), Positives = 303/610 (49%), Gaps = 30/610 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 M PGVY+M G +LYVGKA NL+ R+ SY + ++++I +I+ V Sbjct: 15 NMTSLPGVYRMYGKDGELLYVGKAKNLKNRVSSYFVKTLDHPKTQALVARIYDIQTLVVR 74 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFG 123 +E EALLLE N+IK P +NI+LRDDKS+ YI ++ P L R Q G +FG Sbjct: 75 SETEALLLEQNLIKLHHPPYNIMLRDDKSYVYIFVSADKPYPRLASGRGKGKHQVGKFFG 134 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ S T+ LQ+ F +RSC +S F +RTRPCL +QIKRCS PC G IS E Y Sbjct: 135 PYPSAYTARDTLVVLQKLFNVRSCENSFFANRTRPCLQYQIKRCSAPCVGFISPEDYKAD 194 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNR 241 V + +FL G L +++ M A ++E A+ +RDR+A L +Q+ Sbjct: 195 VDNSIRFLQGDTKELNQELIAKMEAAAEALEFEKAVFYRDRMALLREVQSQQAIYKLKGE 254 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DKPCP 300 D S+ + + C+Q G+ G ++F S+ + + ++ P Sbjct: 255 ADILSIAYQAGVTCVQIMHVRNGKMLGGKSYFPDMLSDDLGQMLADFIANFYFQVADEIP 314 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 ++++ E + LE + + +G K++I + + + +E A +N + KL+ I Sbjct: 315 AELIVNLEVADRKELEAALSQHFGKKIQIKSKVRETRAEWLELAQMNVQHAIQGKLANHI 374 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 + P IE +D SH MG V VV G K YR+F++ Sbjct: 375 ELNERFHQLEQVVGRPVDR--IECFDISHTMGEDTVASCVVFDSGGARKRDYRQFSIQD- 431 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 ++ DD A MR L RR+ + + PD++++DGGKGQL A Sbjct: 432 -IQAGDDYAAMRQALTRRYKKAL-------------------LPDLLLIDGGKGQLHMAM 471 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 V+++L ++ ++ ++KG R G+E G + L L+ IQ++RDEAHRF Sbjct: 472 EVMQELGLDAF--MVGVSKGEGRKPGLETLHFTDGSKIQLPEDHKALHLIQQVRDEAHRF 529 Query: 541 AITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AIT HR +R KK S L+ I G+GP R+R LL FG ++ + ++S L + G+ + Sbjct: 530 AITKHRAKRDKKRGSSVLEVIPGLGPKRRRDLLTHFGGIQGVLKASERDLQLVPGLGSVM 589 Query: 600 ACKIYNHFHK 609 A IY H+ Sbjct: 590 ARMIYKVLHE 599 >gi|254977032|ref|ZP_05273504.1| excinuclease ABC subunit C [Clostridium difficile QCD-66c26] gi|255094359|ref|ZP_05323837.1| excinuclease ABC subunit C [Clostridium difficile CIP 107932] gi|255316112|ref|ZP_05357695.1| excinuclease ABC subunit C [Clostridium difficile QCD-76w55] gi|255518773|ref|ZP_05386449.1| excinuclease ABC subunit C [Clostridium difficile QCD-97b34] gi|255651951|ref|ZP_05398853.1| excinuclease ABC subunit C [Clostridium difficile QCD-37x79] gi|260684915|ref|YP_003216200.1| excinuclease ABC subunit C [Clostridium difficile CD196] gi|260688573|ref|YP_003219707.1| excinuclease ABC subunit C [Clostridium difficile R20291] gi|260211078|emb|CBA66452.1| excinuclease ABC subunit C [Clostridium difficile CD196] gi|260214590|emb|CBE07159.1| excinuclease ABC subunit C [Clostridium difficile R20291] Length = 605 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 201/624 (32%), Positives = 328/624 (52%), Gaps = 40/624 (6%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFT 61 +++P PGVY M D ++YVGKA +L+ R++ Y S+ NHT ++ M+ I + Sbjct: 8 LKKLPSEPGVYLMKDKYDHIIYVGKAISLKNRVRQYFQSSKNHTSKVKSMVKNIYKFEYI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 +T +E+EAL+LE N+IKR +P++N++LRDDK++PYI +T P + K R + Y Sbjct: 68 ITDSELEALILECNLIKRYRPKYNVVLRDDKTYPYIKVTTNEDYPRILKVRRVLKDKAKY 127 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCA---DSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 FGP+ ++ AV T+ + T+ +RSC D +++TRPCL I +C GPCTG +S E Sbjct: 128 FGPYTNITAVNDTLELISSTYPIRSCKIDIDKAIKNKTRPCLNLHINKCLGPCTGNVSKE 187 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + + E LSG L E + MN++++ +E A ++RD++ +L + Sbjct: 188 EYGKMIEEIIMCLSGKEEKLMELLKEKMNESSMNFRFEEAAVYRDKIKSLEEMIQKQKID 247 Query: 239 YN----RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 D ++ N AC+Q F G+ G F L+ +S A ILS F++QFY Sbjct: 248 ATVSDLNQDVVAMARAHNEACVQVFFIRNGKIVGREHFILEGVMDSPRASILSSFVKQFY 307 Query: 295 TDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS-- 351 ++ P+ +++ +E E++S+LE + G KV I VP++GEK+ ++E NA Sbjct: 308 NEQEYIPKELIIEDEIEDSSILEEWLSSKKGQKVTIRVPQKGEKKSLVEMVRKNAVEYLE 367 Query: 352 --HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 L++ + L +P RIE YD S+I G ++G MVV K Sbjct: 368 KFSDMNKRKYEKSIGALEELKQILNLEKLPIRIEAYDISNIQGVDSIGSMVVYTNAKKDK 427 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 +YR++ + V +D M +++RR + PD+++L Sbjct: 428 KEYRRYKIKT--VIGPNDYDSMAEIVDRRLKH-------------------GNLPDLILL 466 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ+SA + VL+ +V+ I + + K K + K + + L+ + F Sbjct: 467 DGGKGQVSAVKKVLELNDVD--IPLWGMYKDDKHRTKG---LICKEKEIELDKTTNLYRF 521 Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 I +++E H +AIT HR R KA S LD+I GIG RK+ LL F V+ I +++ E Sbjct: 522 IASIQEEVHNYAITYHRSLRNKALTKSILDDIQGIGEKRKKSLLNHFKDVEAIKKATMEE 581 Query: 589 LASIEGISKKIACKIYNHFHKNTS 612 L ++G++K IA +YN F K + Sbjct: 582 LLEVDGMNKSIADNVYNFFRKEEN 605 >gi|126701033|ref|YP_001089930.1| excinuclease ABC subunit C [Clostridium difficile 630] gi|255102613|ref|ZP_05331590.1| excinuclease ABC subunit C [Clostridium difficile QCD-63q42] gi|255308439|ref|ZP_05352610.1| excinuclease ABC subunit C [Clostridium difficile ATCC 43255] gi|119367642|sp|Q180Q8|UVRC_CLOD6 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|115252470|emb|CAJ70313.1| Excinuclease ABC subunit C [Clostridium difficile] Length = 605 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 201/624 (32%), Positives = 327/624 (52%), Gaps = 40/624 (6%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFT 61 +++P PGVY M D ++YVGKA +L+ R++ Y S+ NHT ++ M+ I + Sbjct: 8 LKKLPSEPGVYLMKDKYDHIIYVGKAISLKNRVRQYFQSSKNHTSKVKSMVKNIYKFEYI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 +T +E+EAL+LE N+IKR +P++N++LRDDK++PYI +T P + K R + Y Sbjct: 68 ITDSELEALILECNLIKRYRPKYNVVLRDDKTYPYIKVTTNEDYPRILKVRRVLKDKAKY 127 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCA---DSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 FGP+ ++ AV T+ + T+ +RSC D +++TRPCL I +C GPCTG +S E Sbjct: 128 FGPYTNITAVNDTLELISSTYPIRSCKIDIDKAIKNKTRPCLNLHINKCLGPCTGNVSKE 187 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + + E LSG L E + MN++++ +E A ++RD++ +L + Sbjct: 188 EYGKMIEEIIMCLSGKEEKLMELLKEKMNESSMNFRFEEAAVYRDKIKSLEEMIQKQKID 247 Query: 239 YN----RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 D ++ N AC+Q F G+ G F L+ +S A ILS F++QFY Sbjct: 248 ATVSDLNQDVVAMARAHNEACVQVFFIRNGKIVGREHFILEGVMDSPRASILSSFVKQFY 307 Query: 295 TDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS-- 351 ++ P+ +++ +E E++S+LE + G KV I VP++GEK+ ++E NA Sbjct: 308 NEQEYIPKELIIEDEIEDSSILEEWLSSKKGQKVTIRVPQKGEKKSLVEMVRKNAVEYLE 367 Query: 352 --HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 L++ + L +P RIE YD S+I G ++G MVV K Sbjct: 368 KFSDMNKRKYEKSIGALEELKQILNLEKLPIRIEAYDISNIQGVDSIGSMVVYTNAKKDK 427 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 +YR++ + V +D M +++RR + PD+++L Sbjct: 428 KEYRRYKIKT--VIGPNDYDSMAEIVDRRLKH-------------------GNLPDLILL 466 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ+SA + VL+ +V+ I + + K K + K + + L+ + F Sbjct: 467 DGGKGQVSAVKKVLELNDVD--IPLWGMYKDDKHRTKG---LICKEKEIELDKTTNLYRF 521 Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 I +++E H +AIT HR R KA S LD+I GIG RK+ LL F V I +++ E Sbjct: 522 IASIQEEVHNYAITYHRSLRNKALTKSILDDIQGIGEKRKKSLLNHFKDVDAIKKATMEE 581 Query: 589 LASIEGISKKIACKIYNHFHKNTS 612 L ++G++K IA +YN F K + Sbjct: 582 LLEVDGMNKSIADNVYNFFRKEEN 605 >gi|193215119|ref|YP_001996318.1| excinuclease ABC subunit C [Chloroherpeton thalassium ATCC 35110] gi|193088596|gb|ACF13871.1| excinuclease ABC, C subunit [Chloroherpeton thalassium ATCC 35110] Length = 640 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 182/634 (28%), Positives = 302/634 (47%), Gaps = 49/634 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +P PGVYQ D RV+YVGKA NL+ R++SY + + H+ + ++ +I ++ Sbjct: 33 KLKNLPTSPGVYQFKDKDERVIYVGKAKNLRARVQSYFRNLSEHSGKTRLLVRRIMDLEL 92 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T TEVEAL+LE N+IK+LKPR+NI L+DDKS+PYI++T+ P ++ R+ Sbjct: 93 ILTGTEVEALILENNLIKQLKPRYNINLKDDKSYPYIVVTN-EPFPRVFPTRNVRRDGSK 151 Query: 121 YFGPFASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEI 175 Y+GP+ + ++++ R+ L +++ + + CL + IK+C GPC Sbjct: 152 YYGPYTETRQMRMLLDAISEIFQVRSCSLNMTDENIAARKFKVCLDYHIKKCLGPCEALQ 211 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 S E Y + E KK L G ++ + M + +E A + +L AL Sbjct: 212 SREDYDAMIDEVKKLLRGKTKDIVRSLESRMKNYAKELKFEYAAEIKRQLEALERYSARQ 271 Query: 236 DSIYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 + D F++ + AC G+ G+ F+ + A ++ L + Sbjct: 272 KVLTTDEIDRDIFAVAREGDDACGTVFKVRDGKLLGSQHFYFSNVEDEPMANLVGRLLEK 331 Query: 293 FYTDKP--CPENILLSEEAEETSLLEISFFKQY-----GYKVKITVPKQGEKRKIIEQAL 345 +Y + P I +E+ +E K+ KV +P+ G+K K+++ Sbjct: 332 YYLETTDILPNEIFTAEQPSNQDAIEALLQKRMSEIGEQKKVHFVIPQIGDKAKLVDMCA 391 Query: 346 INAHRSHTQKLSTEISH------QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCM 399 NA ++ + ++ + L P+RIE +DNS+ G V M Sbjct: 392 ANAKHLLSEYQLQKQKRGEAKAIPHAVRSLERDLRLAKPPRRIECFDNSNFQGTDPVASM 451 Query: 400 VVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS 459 + + K+ YR+F + V+ +D A M ++ERR++ + Sbjct: 452 ICFVDGKPKKSDYRRFKIKT--VEGANDFASMAEIIERRYTGSLAE-------------- 495 Query: 460 FPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALV 519 PD++++DGGKGQLS+A VL+K V + +I +AK + E FF + Sbjct: 496 SLPMPDLIVVDGGKGQLSSAYAVLQKSGVG--VPVIGLAKRLE-----EVFFPNEQLPHN 548 Query: 520 LNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTV 578 L L +Q++RDEAHRFAIT HR+ R K + L EI GIG + LL++FG+V Sbjct: 549 LPKTSSSLKLLQQVRDEAHRFAITFHRELRSKRTLQTELTEIEGIGKTKAEKLLKTFGSV 608 Query: 579 KMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 + ++S E LA G KK A +I+ HF Sbjct: 609 AEVKKASAEALAEAVG--KKAAERIFAHFQGKAD 640 >gi|306831206|ref|ZP_07464367.1| excision endonuclease subunit UvrC [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426772|gb|EFM29883.1| excision endonuclease subunit UvrC [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 633 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 172/619 (27%), Positives = 294/619 (47%), Gaps = 40/619 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D G ++YVGKA NL+ R++SY H +++T + ++S+I + + Sbjct: 42 KLELLPDSPGCYIHKDKNGTIIYVGKAKNLKNRVRSYFHGSHNT-KTELLVSEIEDFEYI 100 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + EALLLE N+I+ P++NI L+DDKS+P+I IT + P L R Y Sbjct: 101 VTGSNTEALLLEINLIQENMPKYNIKLKDDKSYPFIKITTNEQYPRLMITRQIKKDGAMY 160 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ A + L R F + C + + C + + +C + + ++ Sbjct: 161 FGPYPDSGAATEIKRLLDRIFPFKKCTNP----ANKVCFYYHLGQCKAHTICHVDHDYFV 216 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + H+ K FL+G ++ + +++ M +A+ ++E A +RD L A+S ++ + Sbjct: 217 DMAHDVKNFLNGQDNKIVDQLKDKMQKASDLMEFERAAEYRDLLQAISTLRTKQRVMSQD 276 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 M D F Y +K C+Q F G+ ++ + Sbjct: 277 MMDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDPEEDFLTYMGQFYRDNKHF 336 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ I + +E +E + I K P++GEK++++ A+ NA + Sbjct: 337 IPKEIFIPKEIDEELVKAIVDTKIIK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 389 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +++ + +P RIE +DNS+I G S V MVV K YRK Sbjct: 390 LEKDVKKTYGAVENIGELLNIPKPV-RIEAFDNSNIQGTSPVAAMVVFVNGKPSKKDYRK 448 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + V DD A MR V+ RR+S+++K+ PD++I+DGG+G Sbjct: 449 FKIKT--VVGPDDYASMREVIYRRYSRVMKDG--------------LVPPDLIIIDGGQG 492 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+ + + I I + K K E F E + L + +QR++ Sbjct: 493 QVNVARDVI-ENKLGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELPRNSEEFFLLQRIQ 550 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+LL++ F ++ I ++ + + + Sbjct: 551 DEVHRFAITFHRQVRSKNSFSSKLDGIAGLGPKRKQLLMKHFKSLPNIQKADIDDIVN-C 609 Query: 594 GISKKIACKIYNHFHKNTS 612 GI + +A I + + Sbjct: 610 GIPRNVATAIKEKLSEEEA 628 >gi|38233900|ref|NP_939667.1| excinuclease ABC subunit C [Corynebacterium diphtheriae NCTC 13129] gi|81401396|sp|Q6NH31|UVRC_CORDI RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|38200161|emb|CAE49842.1| Putative excinuclease ABC subunit C [Corynebacterium diphtheriae] Length = 687 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 187/678 (27%), Positives = 311/678 (45%), Gaps = 74/678 (10%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA NL+ R+ +Y + R M++ ++ +TV Sbjct: 13 TIPTEPGVYKFRDPEGRVIYVGKAINLRSRLSNYFQDLSVLHPRTRQMVTTATSVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +EVEAL LE IK+ P FN+ RDDK++P + ++ + P Y +R Y+G Sbjct: 73 ASEVEALQLEYTWIKKFDPHFNVKYRDDKTYPVLAVSVGERFPRAYFYRGPQRKGVRYYG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ AV +T++ L R F +R+C +VF RPCLL I +CS PC G +S ++ Sbjct: 133 PYSHAWAVRETLDLLTRVFPIRTCTKAVFNRHESLGRPCLLGYIDKCSAPCIGRVSESEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 V F++G ++ ++ M A+ D+E A RD L A+ I + Sbjct: 193 RIIVDGFCSFMAGNTDSVVRRLTNEMISASEALDFEKAARKRDDLNAVRKITEQQAVVLG 252 Query: 241 R---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT--DSESTNAQILSYFLRQFYT 295 D ++ + A IQ G+ RG + ++ +SES ++L FL +FY+ Sbjct: 253 DGTDADVIAVAADDLEASIQLFHVRSGKIRGQRGWIVERTDNSESELEELLQSFLIRFYS 312 Query: 296 DKP------------------------------------CPENILLSEEAEETSLLEISF 319 D+ P+ +L+ + Sbjct: 313 DEVAHEDQVSDKELTVARRGVDKQSHESDLANRRINTSVVPKEVLVHKAPANVEQTTAVL 372 Query: 320 FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE----ISHQMILKDFTKKFAL 375 V + VP++G+KR + + NA + Q + L++ + L Sbjct: 373 RSLRHSNVDVRVPQRGDKRALADTVFANAQEALRQHKIKRVSDLTTRSAALQEIHEALGL 432 Query: 376 PHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMV 434 P RIE D SHI G V +VV + K+ YR++ + + + +D + V Sbjct: 433 DEPPLRIECTDISHIQGTDVVASLVVFEDGLPKKSDYRRYKIKEAAGEGKSNDVGSIAEV 492 Query: 435 LERRFSQLI-----------------KNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + RRF++ ++E + + F P + I+DGG Q++ Sbjct: 493 VRRRFARYKNDCRMVPQEDEFDGSRFEDESLAGENTVAAKQRFAYSPQLFIVDGGAPQVA 552 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 AAQ VL +L + + + +I IAK + E + + + L+L LY IQ+LRDEA Sbjct: 553 AAQDVLDELGITD-VALIGIAKRLE-----EIWLPGEEDPLILPRNSQGLYLIQQLRDEA 606 Query: 538 HRFAITTHRKRRKKAAYS-PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR++R + LD+I G+GP R+++L+ FG+VK + ++S + + GI Sbjct: 607 HRFAITFHRQQRSQRMRRSILDDIKGLGPARRKVLVAHFGSVKELKKASESEIMMVNGIG 666 Query: 597 KKIACKIYNHFHKNTSHT 614 +A IY H ++ + Sbjct: 667 PALAHSIYVALHPDSDDS 684 >gi|255657363|ref|ZP_05402772.1| excinuclease ABC subunit C [Clostridium difficile QCD-23m63] gi|296451823|ref|ZP_06893542.1| excision endonuclease subunit UvrC [Clostridium difficile NAP08] gi|296879781|ref|ZP_06903755.1| excision endonuclease subunit UvrC [Clostridium difficile NAP07] gi|296259302|gb|EFH06178.1| excision endonuclease subunit UvrC [Clostridium difficile NAP08] gi|296429252|gb|EFH15125.1| excision endonuclease subunit UvrC [Clostridium difficile NAP07] Length = 605 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 200/624 (32%), Positives = 326/624 (52%), Gaps = 40/624 (6%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFT 61 +++P PGVY M D ++YVGKA +L+ R++ Y S+ NHT ++ M+ I + Sbjct: 8 LKKLPSEPGVYLMKDKYDHIIYVGKAISLKNRVRQYFQSSKNHTSKVKSMVKNIYKFEYI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 +T +E+EAL+LE N+IKR +P++N++LRDDK++PYI +T P + K R + Y Sbjct: 68 ITDSELEALILECNLIKRYRPKYNVVLRDDKTYPYIKVTTNEDYPRILKVRRVLKDKAKY 127 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCA---DSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 FGP+ ++ AV T+ + T+ +RSC D +++TRPCL I +C GPCTG +S E Sbjct: 128 FGPYTNITAVNDTLELISSTYPIRSCKIDIDKAIKNKTRPCLNLHINKCLGPCTGNVSKE 187 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + + E LSG L E + MN++++ +E A ++RD++ +L + Sbjct: 188 EYGKMIEEIIMCLSGKEEKLMELLKEKMNESSMNFRFEEAAVYRDKIKSLEEMIQKQKID 247 Query: 239 YN----RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 D ++ N AC+Q F G+ G F L+ +S A ILS F++QFY Sbjct: 248 ATVSDLNQDVVAMARAHNEACVQVFFIRNGKIVGREHFILEGVMDSPRASILSSFVKQFY 307 Query: 295 TDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS-- 351 ++ P+ +++ +E E++ +LE + G KV I VP++GEK+ ++E NA Sbjct: 308 NEQEYIPKELIIEDEIEDSCILEEWLSSKKGQKVTIRVPQKGEKKSLVEMVRKNAVEYLE 367 Query: 352 --HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 L++ + L +P RIE YD S+I G ++G MVV K Sbjct: 368 KFSDMNKRKYEKSIGALEELKQILNLEKLPIRIEAYDISNIQGVDSIGSMVVYTNAKKDK 427 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 +YR++ + V +D M +++RR + PD+++L Sbjct: 428 KEYRRYKIKT--VIGPNDYDSMAEIVDRRLKH-------------------GNLPDLILL 466 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ+SA + VL+ +V+ I + + K K + K + + L+ + F Sbjct: 467 DGGKGQVSAVKKVLELNDVD--IPLWGMYKDDKHRTKG---LICKEKEIELDKTTNLYRF 521 Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 I +++E H +AIT HR R KA S LD+I GIG RK+ LL F V I +++ E Sbjct: 522 IASIQEEVHNYAITYHRSLRNKALTKSILDDIQGIGEKRKKSLLNHFKDVDAIKKATMEE 581 Query: 589 LASIEGISKKIACKIYNHFHKNTS 612 L ++G++K IA +YN F K + Sbjct: 582 LLEVDGMNKSIADNVYNFFRKEAN 605 >gi|284053794|ref|ZP_06384004.1| excinuclease ABC subunit C [Arthrospira platensis str. Paraca] Length = 624 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 204/630 (32%), Positives = 304/630 (48%), Gaps = 39/630 (6%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIR 59 M +++P PGVY M D +LY+GK+ L+ R++SY +NH+HRI MI Q+ +I Sbjct: 15 MRLKEIPPVPGVYFMKDGNENILYIGKSKKLRSRVRSYFRDRHNHSHRINLMIQQVTDIE 74 Query: 60 FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS--STI 117 F VT TE EAL LEA++IK +P FN+LL+DDK +PY+ IT P ++ R S Sbjct: 75 FIVTDTEAEALALEAHLIKTHQPHFNVLLKDDKKYPYLCITWSEPYPRIFITRKRSLSNP 134 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 + Y+GP+ + + ++R F LR +F + RPCL + I RC G C IS Sbjct: 135 KDRYYGPYVDTGLLRSNLQLIKRLFPLRQRPKPLF--KDRPCLNYDIGRCPGVCQEMISP 192 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E Y + V + G L + M QA + ++E+A RDRL L + Sbjct: 193 EDYHQIVQKVAMVFQGRTEELIANLTAQMQQAAAELNFETAAKLRDRLQGLQSLNQDQKV 252 Query: 238 IYNRM----DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSES------TNAQILS 287 D +L + A +Q G G FF K I+ Sbjct: 253 SLPDETVSLDAIALATDGQQASVQLFQIRAGHLVGRLGFFAKVYPTEKALTSLELGLIIQ 312 Query: 288 YFLRQFYTDKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344 L++ Y P I L + L+ + G KV + P++ K +IE Sbjct: 313 RVLQEHYQTVDPVEIPREIFLQYSLPDADLVTDWLSDRKGRKVTLITPQRQSKLDLIEMV 372 Query: 345 LINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGE 404 NA+ + H L+D T+ LP +P RIE YD SHI G AV VV + Sbjct: 373 ERNANYELMRVQKLSDRHHQSLQDLTEILDLPDLPHRIEGYDISHIQGSDAVASRVVFID 432 Query: 405 NGFVKNQYRKFNLHPNDVKT--QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPS 462 K YR++ + +V + DD A + V+ RRF Sbjct: 433 GLPAKQHYRQYKIKNPNVHSGRSDDFASLAEVIGRRFRDY-------------HNLEPQD 479 Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522 PD++++DGGKGQLSA VL+ L++ + +IS+AK + E F + + L N Sbjct: 480 KPDLIMIDGGKGQLSAVVKVLQDLDILEELKVISLAKRRE-----EIFVPGESQPLTTNP 534 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMI 581 P + ++RLRDEAHRFA++ HR +R K S LD+I G+G R++LLL F ++ I Sbjct: 535 EQPGVELLRRLRDEAHRFAVSFHRNQRSKRMKRSHLDDIPGLGHHRQKLLLGHFRSIDYI 594 Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNT 611 ++P LA + GI +K+A +IY++FH +T Sbjct: 595 RIATPTQLAEVNGIGEKLAQQIYDYFHPST 624 >gi|229158127|ref|ZP_04286196.1| UvrABC system protein C [Bacillus cereus ATCC 4342] gi|228625356|gb|EEK82114.1| UvrABC system protein C [Bacillus cereus ATCC 4342] Length = 594 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 178/611 (29%), Positives = 297/611 (48%), Gaps = 43/611 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 12 LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI L+DDK++P+I IT K P L R+ +G YFGP+ Sbjct: 71 NLEALILELNLIKKHDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T L R + LR C++ + CL + + +C PC E++ E+ E V Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E KFL+GG+ ++ ++ M +A+ K ++E A RD++A + I I + Sbjct: 186 EIIKFLNGGHKEVRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ E + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 I++ + + + +V+ T PK+G+K+ ++E A NA + Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ K+ + RIE +DNS+I G + V M+ + K +YRK+ + Sbjct: 359 EERTIKAVENLGKQLGIETP-YRIEAFDNSNIQGSNPVSAMIAFIDGKPAKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++ +K PD++I+DGGKG L+A Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEG--------------LPLPDLIIIDGGKGHLAA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A VL+ +L + I + + K K E ++L Y +QR++DE Sbjct: 462 ASDVLENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K+ S LD+I GIG RK++LL+ FG++K + +S G+ Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKILLKHFGSLKKMKEASVTEFVEA-GMP 577 Query: 597 KKIACKIYNHF 607 K +A IY + Sbjct: 578 KNVAETIYTYL 588 >gi|228923262|ref|ZP_04086552.1| UvrABC system protein C [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836468|gb|EEM81819.1| UvrABC system protein C [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 594 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 178/611 (29%), Positives = 295/611 (48%), Gaps = 43/611 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 12 LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI L+DDK++P+I IT K P L R+ +G YFGP+ Sbjct: 71 NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T L R + LR C + + CL + + +C PC E++ E+ E V Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCTNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E KFL+GG+ ++ ++ M +A+ K ++E A RD++A + I I + Sbjct: 186 EIIKFLNGGHKEVRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ E + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 I++ + + + +V+ T PK+G+K+ ++E A NA + Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E + K+ + RIE +DNS+I G + V M+ + K +YRK+ + Sbjct: 359 EERTIKAVDHLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++ +K PD++I+DGGKG L+A Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------SPLPDLIIIDGGKGHLAA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A +L+ +L + I + + K K E ++L Y +QR++DE Sbjct: 462 ASDILENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K+ S LD+I GIG RK++LL+ FG++K + +S E G+ Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASIEEFVEA-GMP 577 Query: 597 KKIACKIYNHF 607 K +A IY + Sbjct: 578 KNVAETIYTYL 588 >gi|212638424|ref|YP_002314944.1| excinuclease ABC subunit C [Anoxybacillus flavithermus WK1] gi|212559904|gb|ACJ32959.1| Excinuclease ABC subunit C [Anoxybacillus flavithermus WK1] Length = 607 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 180/611 (29%), Positives = 299/611 (48%), Gaps = 41/611 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY H + ++++I + + VT + Sbjct: 26 LPDQPGCYLMKDAHGTVIYVGKAKVLKNRVRSYFTGT-HDGKTLRLVNEIADFEYIVTSS 84 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 ++EAL+LE N+IK+ P++N++L+DDKS+P+I IT P L R +G YFGP+ Sbjct: 85 DLEALILEMNLIKKYDPKYNVMLKDDKSYPFIKIT-GETHPRLIITRTVKKDKGKYFGPY 143 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + A +T L R + LR C + + CL + + +C GPC ++S E+ + V Sbjct: 144 PNAQAAHETKKLLDRLYPLRKCE----KIPKKVCLYYHMGQCLGPCEYKVSEEENKQIVE 199 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 + +FL+GG +KE + M +A + +E A +RD++A + + I + Sbjct: 200 QITRFLNGGYKEVKEALTEKMMEAAEQLQFERAKEYRDQIAYIEALMEKQKMILHDFVDR 259 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F ++K C+Q F G+ E + P Sbjct: 260 DIFGYAYDKGWMCVQVFFIRQGKLIERNVSIFPLYQEPEEEFLTFLGQFYSKHYHLKPRE 319 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS----T 358 I+L E + +++ +V +T PK G+K+++++ A NA + +K Sbjct: 320 IVLPREIDGEMAMKLL-------EVSVTQPKSGKKKELVDLACKNAQIALQEKFFLIERD 372 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E ++ + RIE++DNS+I G AV MVV + K +YRK+ + Sbjct: 373 EERTIRAVERIGGALGISTP-HRIEVFDNSNIQGTDAVAAMVVFIDGKPEKKEYRKYKIK 431 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR++++++ P+++++DGGKGQ+ A Sbjct: 432 T--VQGADDYESMREVIRRRYTRVLRER--------------LPLPNLIVVDGGKGQIQA 475 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ VL + + I I + K K F + L Y +QR+++E H Sbjct: 476 AKEVL-ECELGLSIPIAGLVKDEKHRTSH-LLFGDPPSVISLEKNSQEFYLLQRMQEEVH 533 Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ R K+A +S LD+I G+G RK+ LLQ FG++K + ++ E + I K Sbjct: 534 RFAITFHRQVRSKSAFHSILDQIPGVGTKRKQALLQHFGSIKKMKEATVEQIQEA-NIPK 592 Query: 598 KIACKIYNHFH 608 IA KIY Sbjct: 593 HIAQKIYEALQ 603 >gi|229192717|ref|ZP_04319676.1| UvrABC system protein C [Bacillus cereus ATCC 10876] gi|228590807|gb|EEK48667.1| UvrABC system protein C [Bacillus cereus ATCC 10876] Length = 594 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 178/611 (29%), Positives = 295/611 (48%), Gaps = 43/611 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 12 LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI L+DDK++P+I IT K P L R+ +G YFGP+ Sbjct: 71 NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T L R + LR C + + CL + + +C PC E++ E+ E V Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCTNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E KFL+GG+ ++ ++ M +A+ K ++E A RD++A + I I + Sbjct: 186 EIIKFLNGGHKEVRSELEIKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ E + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 I++ + + + +V+ T PK+G+K+ ++E A NA + Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E + K+ + RIE +DNS+I G + V M+ + K +YRK+ + Sbjct: 359 EERTIKAVDHLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++ +K PD++I+DGGKG L+A Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------SPLPDLIIIDGGKGHLAA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A +L+ +L + I + + K K E ++L Y +QR++DE Sbjct: 462 ASDILENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVILERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K+ S LD+I GIG RK++LL+ FG++K + +S E G+ Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASIEEFVEA-GMP 577 Query: 597 KKIACKIYNHF 607 K +A IY + Sbjct: 578 KNVAETIYTYL 588 >gi|152976918|ref|YP_001376435.1| excinuclease ABC subunit C [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025670|gb|ABS23440.1| excinuclease ABC, C subunit [Bacillus cytotoxicus NVH 391-98] Length = 596 Score = 485 bits (1248), Expect = e-134, Method: Composition-based stats. Identities = 177/616 (28%), Positives = 298/616 (48%), Gaps = 43/616 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 14 LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIADFEYIVTSS 72 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ PR+N+ L+DDK++P+I IT K P L R +G YFGP+ Sbjct: 73 NLEALILELNLIKKYDPRYNMKLKDDKTYPFIKIT-GEKQPRLLITRKVKKDKGKYFGPY 131 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T L R + LR C + + CL + + +C PC E++ E+ E V Sbjct: 132 PNSQSAHETKKLLDRMYPLRKCT----KMPDKVCLYYHMGQCLAPCVNEVTDEQNKEIVD 187 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 + KFL+GG+ ++ ++ M +A+ K ++E A RD++A + I I N Sbjct: 188 KITKFLNGGHKEIRSELEAKMYEASEKLEFERAKELRDQIAHMDAIMEKQKMIMNDIVDR 247 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ E + + P+ Sbjct: 248 DVFGYAVDKGWMCVQVFFIRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYEQNNHFKPKE 307 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 I + + + + +V +T PK+G+K++++E A NA + Sbjct: 308 IAVPGSIDPELV-------ERFLEVDVTQPKRGKKKELVELANKNAKIALEEKFYLIERD 360 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ ++ + RIE +DNS+I G + V M+V + K +YRK+ + Sbjct: 361 EERTVKAIENLGERLGIDTP-YRIEAFDNSNIQGVNPVSAMIVFIDGKPAKKEYRKYKIK 419 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++ +K PD++++DGGKG L+A Sbjct: 420 T--VQGPDDYESMREVVRRRYTRALKEG--------------LPLPDLIVIDGGKGHLAA 463 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A VL+ +L + I I + K K + ++L Y +QR++DE Sbjct: 464 ASDVLENELGLY--IPIAGLVKDEKHRTSH-LIIGDPPDPVILERNSQEFYLLQRIQDEV 520 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K+ S LD I G+G RK++LL+ FG++K + +S GI Sbjct: 521 HRFAITFHRQLHGKSVIQSALDGIPGVGEKRKKVLLKHFGSLKKMKEASVGEFVEA-GIP 579 Query: 597 KKIACKIYNHFHKNTS 612 + +A IY++ N + Sbjct: 580 QHVAETIYSYLTNNKT 595 >gi|306833315|ref|ZP_07466443.1| excision endonuclease subunit UvrC [Streptococcus bovis ATCC 700338] gi|304424512|gb|EFM27650.1| excision endonuclease subunit UvrC [Streptococcus bovis ATCC 700338] Length = 599 Score = 485 bits (1248), Expect = e-134, Method: Composition-based stats. Identities = 172/619 (27%), Positives = 293/619 (47%), Gaps = 40/619 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D G ++YVGKA NL+ R++SY H +++T + ++S+I + + Sbjct: 8 KLELLPDSPGCYIHKDKNGTIIYVGKAKNLKNRVRSYFHGSHNT-KTELLVSEIEDFEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + EALLLE N+I+ P++NI L+DDKS+P+I IT + P L R Y Sbjct: 67 VTGSNTEALLLEINLIQENMPKYNIKLKDDKSYPFIKITTNEQYPRLMITRQIKKDGAMY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ A + L R F + C + + C + + +C + + ++ Sbjct: 127 FGPYPDSGAATEIKRLLDRIFPFKKCTNP----ANKVCFYYHLGQCKAHTICHVDHDYFV 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + H+ K FL+G ++ + +++ M +A+ ++E A +RD L A+S ++ + Sbjct: 183 DMAHDVKNFLNGQDNKIVDQLKDKMQKASDLMEFERAAEYRDLLQAISTLRTKQRVMSQD 242 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 M D F Y +K C+Q F G+ ++ + Sbjct: 243 MMDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDPEEDFLTYMGQFYRDNKHF 302 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ I + +E +E + I K P++GEK++++ A+ NA + Sbjct: 303 IPKEIFIPKEIDEDLVKAIVDTKIIK-------PQRGEKKQLVNLAIKNARMSLQQKFDL 355 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +++ + +P RIE +DNS+I G S V MVV K YRK Sbjct: 356 LEKDVKKTYGAVENIGELLNIPKPV-RIEAFDNSNIQGTSPVAAMVVFVNGKPSKKDYRK 414 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + V DD A MR V+ RR+S+++K+ PD++I+DGG+G Sbjct: 415 FKIKT--VVGPDDYASMREVIYRRYSRVLKDG--------------LVPPDLIIIDGGQG 458 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+ + + I I + K K E F E + L + +QR++ Sbjct: 459 QVNVARDVI-ENKLGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELPRNSEEFFLLQRIQ 516 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+LL++ F ++ I ++ + + + Sbjct: 517 DEVHRFAITFHRQVRSKNSFSSKLDGIAGLGPKRKQLLMKHFKSLPNIQKADIDDIVN-C 575 Query: 594 GISKKIACKIYNHFHKNTS 612 GI + +A I + Sbjct: 576 GIPRNVATAIKAKLSDEEA 594 >gi|171779772|ref|ZP_02920728.1| hypothetical protein STRINF_01609 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281874|gb|EDT47308.1| hypothetical protein STRINF_01609 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 598 Score = 485 bits (1248), Expect = e-134, Method: Composition-based stats. Identities = 168/620 (27%), Positives = 293/620 (47%), Gaps = 40/620 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D G+++YVGKA NL+ R++SY H +++T + ++S+I + + Sbjct: 8 KLELLPDSPGCYIHKDKNGKIIYVGKAKNLKNRVRSYFHGSHNT-KTELLVSEIEDFEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + EALLLE N+I+ P++NI L+DDKS+P+I IT + P L R Y Sbjct: 67 VTGSNTEALLLEINLIQENMPKYNIKLKDDKSYPFIKITVNEQYPRLMITRQIKKDGAMY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ A + L R F + C + + C + + +C + + ++ Sbjct: 127 FGPYPDSGAATEIKRLLDRIFPFKKCTNP----ANKVCFYYHLGQCKAHTICHVDHDYFV 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E + K FL G ++ + + + M +A+ ++E A +RD L A+S ++ + Sbjct: 183 EMAQDVKNFLDGKDNKIVDGLKDKMQKASDMMEFERAAEYRDLLQAISTLRTKQRVMNQD 242 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + + Sbjct: 243 MMDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDPEEDFLTYVGQFYRDSKHF 302 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ I + ++ +E + + K P++GEK++++ A+ NA + Sbjct: 303 IPKEIFIPQDIDEELVKAVVDTKVIK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 355 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +++ + +P RIE +DNS+I G S V MVV K YRK Sbjct: 356 LEKDIRKTHGAIENIGELLNIPKPV-RIEAFDNSNIQGTSPVAGMVVFVNGKPSKKNYRK 414 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + V DD A MR V+ RR+S+++K+ + PD++I+DGG+G Sbjct: 415 FKIKT--VVGPDDYASMREVIYRRYSRVMKDG--------------LTPPDLIIIDGGQG 458 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+ + + I I + K K E F E + L + +QR++ Sbjct: 459 QVNVARDVI-ENKLGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELPRNSEEFFLLQRIQ 516 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+LL++ F ++ + ++ E + + Sbjct: 517 DEVHRFAITFHRQLRSKNSFSSKLDGIAGLGPKRKQLLMKHFKSLPNVQKADVEDIIN-C 575 Query: 594 GISKKIACKIYNHFHKNTSH 613 GI + +A + + + Sbjct: 576 GIPRNVAVVVKEKLAEEKAD 595 >gi|118602605|ref|YP_903820.1| excinuclease ABC subunit C [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567544|gb|ABL02349.1| Excinuclease ABC subunit C [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 594 Score = 485 bits (1248), Expect = e-134, Method: Composition-based stats. Identities = 194/607 (31%), Positives = 311/607 (51%), Gaps = 29/607 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + + PGVYQM D +V+YVGKA NL+ R+ SY + ++ +++ I + + Sbjct: 6 KLKNLTTNPGVYQMFDKQDQVIYVGKAKNLKNRVSSYFVKTHEQNKARVLVANIKDFKVI 65 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT TE +ALLLE+ +IK+ PR+NILL+D KS+PYI I+ K P + +R Y Sbjct: 66 VTATETQALLLESELIKQHMPRYNILLKDSKSYPYIFIS-HDKHPRVGFYRGKKCQSAQY 124 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ S V +++ L++ F +R C +S +R R+RPCL +QI CS PC +IS E Y Sbjct: 125 FGPYPSAHVVRDSLSLLKKIFKVRQCTNSTYRSRSRPCLEYQIGLCSAPCVNKISDENYQ 184 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN-DSIYN 240 V FLSG E++++ M A+ ++E A RD+L L IQ + S N Sbjct: 185 SDVLMMSLFLSGKGRETLERVSKKMQLASKNLEFELAARLRDQLIDLRTIQEQHTSSSSN 244 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 +D S+ + ++ F G+ G K + Q+LS FL +Y K P Sbjct: 245 DLDVVSIAQQDGVNGVEVLFIRSGKQIGQVFILPKNSNNQDIKQVLSAFLPLYYLGKNTP 304 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + IL+S + + ++ I +K+ + A + A + Q L ++ Sbjct: 305 KQILISHKLSDKKIIAS------ALNTHIIDTPNKDKKHYLNIANLTAKENLNQNLLSKF 358 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 + L L +P IE +D SH+MG + V VV + +QYR+F++ Sbjct: 359 RKKSTLVHLQVILGLGKLPNYIECFDISHMMGEATVASCVVFEKGVPKASQYRQFDIK-- 416 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 ++ DD A M V+ RR+S+L+K+++ L PD++ +DGG GQ + A Sbjct: 417 NIIPGDDYAAMNQVVYRRYSKLLKDKKPL--------------PDIIFIDGGLGQFNQAI 462 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE---ALVLNMRDPILYFIQRLRDEA 537 V+ + V++ + ++ IAKG R AG+E K + + L DP L + +R+E+ Sbjct: 463 MVMNSIGVDD-VQLVGIAKGENRKAGLETLITIKDDNVNKINLLPYDPALMLVNHIRNES 521 Query: 538 HRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAI HRK+R + S L+ I G+G LR+ LL FG ++ I ++S + + GI+ Sbjct: 522 HRFAIKNHRKKRASRRTTSILESIKGVGKLRRMALLNYFGGLQEIKKASIHEIQKVSGIN 581 Query: 597 KKIACKI 603 +A KI Sbjct: 582 LVLATKI 588 >gi|327403564|ref|YP_004344402.1| UvrABC system protein C [Fluviicola taffensis DSM 16823] gi|327319072|gb|AEA43564.1| UvrABC system protein C [Fluviicola taffensis DSM 16823] Length = 596 Score = 485 bits (1248), Expect = e-134, Method: Composition-based stats. Identities = 189/626 (30%), Positives = 311/626 (49%), Gaps = 49/626 (7%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + +PE PGVYQ D G +LYVGKA NL+KR+ SY + N+ + ++ +I +I++ Sbjct: 5 LKLKTLPEKPGVYQYFDKNGTILYVGKAKNLKKRVSSYFNKNHDHAKTQILVRKIADIQY 64 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE++ALLLE N+IK+ P++NI L+DDK++P+I I K P ++ R Sbjct: 65 IVVDTEMDALLLENNLIKKYLPKYNIQLKDDKTYPWICI-KKEPFPRVFSTRLLVKDGSK 123 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEI 175 YFGP+ S + ++ ++ F LR+C + + + + CL + I +C GPC + Sbjct: 124 YFGPYPSGRIMHALLDLIRDLFPLRTCALDLATNKIEKGNYKVCLEYHIGKCKGPCEEKQ 183 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 +++ Y + + + L G + + + + + M QA+ +E A + R+ L + + Sbjct: 184 TAQVYNGMIDQIEGILKGNIYTVIQNLKQLMLQASADFRFEEAHDIKTRIELLEKYKAKS 243 Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 +++D S+ + + + + G T +K + T I+++ L + Sbjct: 244 TVVSPTIHQVDVVSMVEDNDTVFVNYLVINHGAIIHGITVEVKRKLDETQQDIITFVLPE 303 Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA---- 348 +L E + + V+ P++G+K+ +I+ +L NA Sbjct: 304 LRERFQSNATEILVEADVDWEME----------GVRFFAPQRGDKKALIDLSLRNAKFYR 353 Query: 349 --HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 + E IL+ L +P IE +DNS+I G + V VV + Sbjct: 354 LEKIKQEKIKDPEKHTNRILETMKTDLRLKELPAHIECFDNSNIQGTNPVSACVVFKDAK 413 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 K YR FN+ V+ DD A MR + RR+ +L++ E+ L P + Sbjct: 414 PSKKDYRHFNVQT--VEGPDDFATMREAVYRRYRRLLEEEQPL--------------PQL 457 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526 +I+DGGKGQLSAA L+KL++ +I II IAK + E F+ L L+ R Sbjct: 458 IIIDGGKGQLSAALEALEKLDLRGKIAIIGIAKRLE-----ELFYPGDSLPLYLDKRSET 512 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKKAAYS-PLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 L IQ LR+EAHRF IT HR RR K+A S L+EI GIG + L+++F +VK + S Sbjct: 513 LKVIQHLRNEAHRFGITHHRNRRSKSALSNELEEIPGIGEKTVQDLIKAFKSVKRVKEQS 572 Query: 586 PETLASIEGISKKIACKIYNHFHKNT 611 E+LA+I G K A I + F+ N+ Sbjct: 573 EESLAAIVG--KAKAQIIRSFFNSNS 596 >gi|218291130|ref|ZP_03495145.1| excinuclease ABC, C subunit [Alicyclobacillus acidocaldarius LAA1] gi|218238941|gb|EED06149.1| excinuclease ABC, C subunit [Alicyclobacillus acidocaldarius LAA1] Length = 610 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 185/617 (29%), Positives = 304/617 (49%), Gaps = 42/617 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+ PGVY M G +LYVGKA L+ R++SY + T + ++SQI + + Sbjct: 8 KLDLLPQRPGVYLMKGEGGEILYVGKAKVLRNRVRSYFTGTHDT-KTQVLVSQIRDFEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT T EALLLE N+IK+ +P +NI+LRDDKS+PYI +T + + P L R Y Sbjct: 67 VTDTVAEALLLECNLIKKHQPPYNIMLRDDKSYPYIKLT-RERHPRLQIVRQVKRDGAKY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + + + T L R + LR C + + CL + I +C PC ++ Y Sbjct: 126 FGPYPNATSAQATKRLLDRLYPLRKCKTL----KKQVCLYYHIHQCLAPCVYDVDEATYE 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 E FL+GG+ ++ ++ + M A ++E A RD + + + + Sbjct: 182 AMAKEISHFLNGGHQDVVRELEQKMQAAAESLEFERAAELRDLIRHIGQVMQEQKVTWTD 241 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F ++ L +Q F G+ + +S+ + ++ Sbjct: 242 GIDRDVFGFAEDRGLLSVQVFFLRNGKLIERQVQIAPH-FDDPLTDFMSFVEQFYHERVD 300 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS- 357 P+ ILL E +L + K + PK+G KR +++ A NA ++ +K+ Sbjct: 301 LPKEILLPEGVPSEALAMVVDAK-------VLQPKRGPKRDLVDLACENARQALAEKIQL 353 Query: 358 TEISHQMILKDFTKKFAL--PHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 + + L + + P+RIE +DNS+ G AV MVV + K++YRK+ Sbjct: 354 IDRNLDRTLGAVMELGQVLAIQPPRRIEAFDNSNFQGVDAVSAMVVFIDGKPAKSEYRKY 413 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 + + DD +R V+ RR+S+L++ ++ L PD+V++DGGKGQ Sbjct: 414 KIRST--QGPDDYEAIREVVRRRYSRLVREQKPL--------------PDLVVIDGGKGQ 457 Query: 476 LSAAQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 L AA VL+ +L +E I + +AK + FF+ + E + + P Y ++R++ Sbjct: 458 LRAALSVLEGELGLE--IPVCGLAKDERHRTSQ-LFFMDEEEPVRIERHSPAFYLLERIQ 514 Query: 535 DEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFA+ HR RR K S LDEI G+GP RK+ +L+ FG++K I+ + PE + Sbjct: 515 DEVHRFAVEFHRSRRSKTGFQSILDEIAGVGPERKKAILRRFGSLKAIAAAQPEDFRGL- 573 Query: 594 GISKKIACKIYNHFHKN 610 GI K+A +I + Sbjct: 574 GIGDKLAREIVARVREE 590 >gi|157693266|ref|YP_001487728.1| excinuclease ABC subunit C [Bacillus pumilus SAFR-032] gi|189038024|sp|A8FG01|UVRC_BACP2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|157682024|gb|ABV63168.1| excision endonuclease subunit UvrC [Bacillus pumilus SAFR-032] Length = 590 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 173/608 (28%), Positives = 290/608 (47%), Gaps = 33/608 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D V+YVGKA L+ R++SY + H + ++S+I + + VT + Sbjct: 12 LPDQPGCYLMKDRQNTVIYVGKAKILKNRVRSYFTGS-HDAKTQRLVSEIEDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++N++L+DDK++P+I IT+ + P L R +G YFGP+ Sbjct: 71 NIEALILELNLIKKYDPKYNVMLKDDKTYPFIKITN-ERHPKLIVTRHVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A +T L R + LR CA R CL + + +C PC +IS E + V Sbjct: 130 PNVQAARETKKLLDRLYPLRKCATLP----DRVCLYYHLGQCLAPCVYDISEETNKQLVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRM 242 E +FL+GG+ +K+++ M +A + ++E A RD++A + + Sbjct: 186 EIIRFLNGGHQQIKKELTEKMQEAAEQLEFERAKELRDQIAYIDSTMEKQKMTMSDLSDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ ++K C+Q F G+ + + + P+ Sbjct: 246 DVFAYAYDKGWMCVQVFFIRQGKLIERDVSLFPMYQDPEEEFLTFMGQFYSKNNHFLPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 IL+ + ++ + ++ + K + + AL + E Sbjct: 306 ILVPDSVDQEMIEQLLETNVHQPKKGKKKDLLLLAHQNAKIAL---KEKFSLIERDEERS 362 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 +K + ++P RIE +DNS+I G V MVV + K +YRK+ + V Sbjct: 363 IGAVKQLGDALNI-YMPYRIEAFDNSNIQGADPVSAMVVFQDGKPYKKEYRKYKIKT--V 419 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD A MR V+ RR+++++K+E PD++++DGGKGQ++AA V Sbjct: 420 TGPDDYASMREVIRRRYTRVLKDE--------------LPLPDLILIDGGKGQINAAIDV 465 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 L + + + + + K K E + L Y +QR++DE HRFAI Sbjct: 466 L-ENELNLSVPVAGLVKDEKHRTSN-LMMGDTLEIVALERNSQAFYLLQRIQDEVHRFAI 523 Query: 543 TTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 + HR+ R K A S LD++ GIG RK+ LL+ FG+VK + ++ E GI K+ A Sbjct: 524 SFHRQLRGKNAFQSILDDVPGIGEKRKKQLLKHFGSVKKMKEATIEDFQEA-GIPKQTAE 582 Query: 602 KIYNHFHK 609 + K Sbjct: 583 LLIEALKK 590 >gi|229175227|ref|ZP_04302743.1| UvrABC system protein C [Bacillus cereus MM3] gi|228608363|gb|EEK65669.1| UvrABC system protein C [Bacillus cereus MM3] Length = 594 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 177/611 (28%), Positives = 294/611 (48%), Gaps = 43/611 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 12 LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI L+DDK++P+I IT K P L R+ +G YFGP+ Sbjct: 71 NLEALILELNLIKKHDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T L R + LR C++ + CL + + +C PC E++ E+ E V Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E KFL+GG+ ++ ++ M +A+ K ++E A RD++A + I I + Sbjct: 186 EIIKFLNGGHKEVRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ E + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 I++ + + + +V+ T PK+G+K+ ++E A NA + Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E + K+ + RIE +DNS+I G + V M+ + K +YRK+ + Sbjct: 359 EERTIKAVDHLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++ +K PD++I+DGGKG L+A Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKE--------------SLPLPDLIIIDGGKGHLAA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 VL+ +L + I + + K K E ++L Y +QR++DE Sbjct: 462 VSDVLENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K+ S LD+I GIG RK++LL+ FG++K + +S G+ Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKILLKHFGSLKKMKEASLAEFVEA-GMP 577 Query: 597 KKIACKIYNHF 607 K +A IY + Sbjct: 578 KNVAETIYTYL 588 >gi|228941697|ref|ZP_04104244.1| UvrABC system protein C [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974623|ref|ZP_04135189.1| UvrABC system protein C [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981218|ref|ZP_04141518.1| UvrABC system protein C [Bacillus thuringiensis Bt407] gi|228778418|gb|EEM26685.1| UvrABC system protein C [Bacillus thuringiensis Bt407] gi|228785026|gb|EEM33039.1| UvrABC system protein C [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817909|gb|EEM63987.1| UvrABC system protein C [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942303|gb|AEA18199.1| excinuclease ABC subunit C [Bacillus thuringiensis serovar chinensis CT-43] Length = 594 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 177/611 (28%), Positives = 294/611 (48%), Gaps = 43/611 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 12 LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI L+DDK++P+I IT K P L R+ +G YFGP+ Sbjct: 71 NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T L R + LR C + + CL + + +C PC E++ E+ E V Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCTNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 KFL+GG+ ++ ++ M +A+ K ++E A RD++A + I I + Sbjct: 186 AIIKFLNGGHKEVRSELEVKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ E + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 I++ + + + +V+ T PK+G+K+ ++E A NA + Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E + K+ + RIE +DNS+I G + V M+ + K +YRK+ + Sbjct: 359 EERTIKAVDHLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++ +K PD++I+DGGKG L+A Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------LPLPDLIIIDGGKGHLAA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A +L+ +L + I + + K K E ++L Y +QR++DE Sbjct: 462 ASDILENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K+ S LD+I GIG RK++LL+ FG++K + +S E G+ Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASIEEFVEA-GMP 577 Query: 597 KKIACKIYNHF 607 K +A IY + Sbjct: 578 KNVAETIYTYL 588 >gi|228917157|ref|ZP_04080715.1| UvrABC system protein C [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228987769|ref|ZP_04147880.1| UvrABC system protein C [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772043|gb|EEM20498.1| UvrABC system protein C [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228842575|gb|EEM87665.1| UvrABC system protein C [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 594 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 177/611 (28%), Positives = 297/611 (48%), Gaps = 43/611 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 12 LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI L+DDK++P+I IT K P L R+ +G YFGP+ Sbjct: 71 NLEALILELNLIKKHDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T L R + LR C++ + CL + + +C PC E++ E+ E V Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E KFL+GG+ ++ ++ M +A+ K ++E A RD++A + I I + Sbjct: 186 EIIKFLNGGHKEVRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ E + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 I++ + + + +V+ T PK+G+K+ ++E A NA + Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ K+ + RIE +DNS+I G + V M+ + K +YRK+ + Sbjct: 359 EERTIKAVENLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++ +K PD++I+DGGKG L+A Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------LPLPDLIIIDGGKGHLAA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A +L+ +L + I + + K K E ++L Y +QR++DE Sbjct: 462 ASDILENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K+ S LD+I GIG RK++LL+ FG++K + +S G+ Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKILLKHFGSLKKMKEASVTEFVEA-GMP 577 Query: 597 KKIACKIYNHF 607 K +A IY + Sbjct: 578 KNVAETIYTYL 588 >gi|301056029|ref|YP_003794240.1| excinuclease ABC subunit C [Bacillus anthracis CI] gi|300378198|gb|ADK07102.1| excinuclease ABC subunit C [Bacillus cereus biovar anthracis str. CI] Length = 594 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 178/611 (29%), Positives = 297/611 (48%), Gaps = 43/611 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 12 LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI L+DDK++P+I IT K P L R+ +G YFGP+ Sbjct: 71 NLEALILELNLIKKHDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T L R + LR C++ + CL + + +C PC E++ E+ E V Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E KFL+GG+ ++ ++ M +A+ K ++E A RD++A + I I + Sbjct: 186 EIIKFLNGGHKEVRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ E + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 I++ + + + +V+ T PK+G+K+ ++E A NA + Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ K+ + RIE +DNS+I G + V M+ + K +YRK+ + Sbjct: 359 EERTIKAVENLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++ +K PD++I+DGGKG L+A Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEG--------------LPLPDLIIIDGGKGHLAA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A VL+ +L + I + + K K E ++L Y +QR++DE Sbjct: 462 ASDVLENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRVQDEV 518 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K+ S LD+I GIG RK++LL+ FG++K + +S G+ Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKILLKHFGSLKKMKEASVTEFVEA-GMP 577 Query: 597 KKIACKIYNHF 607 K +A IY + Sbjct: 578 KNVAETIYTYL 588 >gi|229169245|ref|ZP_04296958.1| UvrABC system protein C [Bacillus cereus AH621] gi|228614228|gb|EEK71340.1| UvrABC system protein C [Bacillus cereus AH621] Length = 594 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 177/611 (28%), Positives = 295/611 (48%), Gaps = 43/611 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 12 LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI L+DDK++P+I IT K P L R+ +G YFGP+ Sbjct: 71 NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T L R + LR C++ + CL + + +C PC E++ E+ E V Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTDEQNKEIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E KFL+GG+ ++ ++ M +A+ K ++E A RD++A + I I + Sbjct: 186 EIIKFLNGGHKEIRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ E + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 I++ + + + +V+ T PK+G+K+ ++E A NA + Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFHLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E + + K+ + RIE +DNS+I G + V M+ + K +YRK+ + Sbjct: 359 EERTIKAVDNLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++ +K PD++I+DGGKG L+A Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------LPLPDLIIIDGGKGHLAA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 VL+ +L + I + + K K E ++L Y +QR++DE Sbjct: 462 TSDVLENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K+ S LD+I GIG RK++LL+ FG++K + +S G+ Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASISEFVEA-GMP 577 Query: 597 KKIACKIYNHF 607 K +A IY + Sbjct: 578 KNVAETIYTYL 588 >gi|206969597|ref|ZP_03230551.1| excinuclease ABC, C subunit [Bacillus cereus AH1134] gi|228954788|ref|ZP_04116809.1| UvrABC system protein C [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960784|ref|ZP_04122422.1| UvrABC system protein C [Bacillus thuringiensis serovar pakistani str. T13001] gi|229048224|ref|ZP_04193793.1| UvrABC system protein C [Bacillus cereus AH676] gi|229081771|ref|ZP_04214264.1| UvrABC system protein C [Bacillus cereus Rock4-2] gi|229111981|ref|ZP_04241525.1| UvrABC system protein C [Bacillus cereus Rock1-15] gi|229129803|ref|ZP_04258770.1| UvrABC system protein C [Bacillus cereus BDRD-Cer4] gi|229147077|ref|ZP_04275437.1| UvrABC system protein C [Bacillus cereus BDRD-ST24] gi|229152712|ref|ZP_04280899.1| UvrABC system protein C [Bacillus cereus m1550] gi|229180784|ref|ZP_04308122.1| UvrABC system protein C [Bacillus cereus 172560W] gi|206735285|gb|EDZ52453.1| excinuclease ABC, C subunit [Bacillus cereus AH1134] gi|228602762|gb|EEK60245.1| UvrABC system protein C [Bacillus cereus 172560W] gi|228630775|gb|EEK87417.1| UvrABC system protein C [Bacillus cereus m1550] gi|228636465|gb|EEK92935.1| UvrABC system protein C [Bacillus cereus BDRD-ST24] gi|228653719|gb|EEL09590.1| UvrABC system protein C [Bacillus cereus BDRD-Cer4] gi|228671545|gb|EEL26845.1| UvrABC system protein C [Bacillus cereus Rock1-15] gi|228701616|gb|EEL54109.1| UvrABC system protein C [Bacillus cereus Rock4-2] gi|228723211|gb|EEL74587.1| UvrABC system protein C [Bacillus cereus AH676] gi|228798919|gb|EEM45895.1| UvrABC system protein C [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804908|gb|EEM51506.1| UvrABC system protein C [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 594 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 178/611 (29%), Positives = 295/611 (48%), Gaps = 43/611 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 12 LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI L+DDK++P+I IT K P L R+ +G YFGP+ Sbjct: 71 NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T L R + LR C + + CL + + +C PC E++ E+ E V Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCTNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E KFL+GG+ ++ ++ M +A+ K ++E A RD++A + I I + Sbjct: 186 EIIKFLNGGHKEVRSELEIKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ E + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 I++ + + + +V+ T PK+G+K+ ++E A NA + Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E + K+ + RIE +DNS+I G + V M+ + K +YRK+ + Sbjct: 359 EERTIKAVDHLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++ +K PD++I+DGGKG L+A Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------SPLPDLIIIDGGKGHLAA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A +L+ +L + I + + K K E ++L Y +QR++DE Sbjct: 462 ASDILENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K+ S LD+I GIG RK++LL+ FG++K + +S E G+ Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASIEEFVEA-GMP 577 Query: 597 KKIACKIYNHF 607 K +A IY + Sbjct: 578 KNVAETIYTYL 588 >gi|224476253|ref|YP_002633859.1| excinuclease ABC subunit C [Staphylococcus carnosus subsp. carnosus TM300] gi|254764943|sp|B9DPT1|UVRC_STACT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|222420860|emb|CAL27674.1| putative excinuclease ABC subunit C [Staphylococcus carnosus subsp. carnosus TM300] Length = 595 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 183/615 (29%), Positives = 294/615 (47%), Gaps = 43/615 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D +V+YVGKA L+ R++SY H + T ++ +I N F VT + Sbjct: 15 VPFEPGCYLMKDRNNQVIYVGKAKRLRNRLRSYFTGA-HDAKTTRLVGEIRNFEFIVTDS 73 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L R G YFGP+ Sbjct: 74 ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLLVTRTVKKGSGKYFGPY 132 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + A +T L R + R + + CL + I +C GPC ++ ++Y + Sbjct: 133 PNAYAAVETKKLLDRIYPFRK----CDKMPNKLCLYYHIGQCLGPCVYDVDQKEYDDMTQ 188 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 E FL+G + + + + M A+ ++E A +RD + + ++ + + Sbjct: 189 EVSDFLNGEDKTIIKNLESRMQAASENLEFEQAKEYRDLIQNIHNLTKKQNIMSADNTAR 248 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F Y +K CIQ F G T + P+ Sbjct: 249 DVFGYYISKGWMCIQVFFVRNGNMIQRDTTMIPLQQTPEEEFYTFIGQFYRLNQHLLPKE 308 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358 + + + ++ + + K I P +G+K+ ++ A NA S K Sbjct: 309 VHVPKNLDKKMIESVVDTK-------ILQPVRGQKKDLVNMANHNAEVSLQNKFELIARD 361 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ ++ + P RIE +DNS+I G AV MV + K YRK+ + Sbjct: 362 ESRTVKAIEELGEQMGI-QTPIRIEAFDNSNIQGVDAVSAMVTFVDGKPDKKGYRKYKIK 420 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD M+ V+ RR+++++ + PD++I+DGGKGQ+S Sbjct: 421 T--VEGPDDYKSMQEVIRRRYTRVLNDG--------------LPLPDLIIVDGGKGQMSV 464 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A VL+ +L ++ I + + K K E + E + L Y +QR++DE Sbjct: 465 AIDVLENELGLD--IPVAGLRKNDKHRTS-ELLYGPAAEVVPLKKNSQAFYLLQRIQDEV 521 Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HRK R+K + S LDEI GIGP RK LL++FG++K + ++ E L G+ Sbjct: 522 HRFAITFHRKTRQKHSFTSALDEIEGIGPKRKTTLLRTFGSIKKMREATLEDLKEA-GLP 580 Query: 597 KKIACKIYNHFHKNT 611 +K+A + +K Sbjct: 581 EKVAESLQKELNKED 595 >gi|229032164|ref|ZP_04188140.1| UvrABC system protein C [Bacillus cereus AH1271] gi|228729170|gb|EEL80170.1| UvrABC system protein C [Bacillus cereus AH1271] Length = 594 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 177/611 (28%), Positives = 294/611 (48%), Gaps = 43/611 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 12 LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI L+DDK++P+I IT K P L R+ +G YFGP+ Sbjct: 71 NLEALILELNLIKKHDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T L R + LR C++ + CL + + +C PC E++ E+ E V Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E KFL+GG+ ++ ++ M +A+ K ++E A RD++A + I I + Sbjct: 186 EIIKFLNGGHKEVRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ E + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 I++ + + + +V+ T PK+G+K+ ++E A NA + Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E + K+ + RIE +DNS+I G + V M+ + K +YRK+ + Sbjct: 359 EERTIKAVDHLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++ +K PD++I+DGGKG L+A Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKE--------------SLPLPDLIIIDGGKGHLAA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 VL+ +L + I + + K K E ++L Y +QR++DE Sbjct: 462 VSDVLENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K+ S LD+I GIG RK++LL+ FG++K + +S G+ Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKILLKHFGSLKKMKEASVTEFVEA-GMP 577 Query: 597 KKIACKIYNHF 607 K +A IY + Sbjct: 578 KNVAETIYTYL 588 >gi|229163507|ref|ZP_04291458.1| UvrABC system protein C [Bacillus cereus R309803] gi|228620076|gb|EEK76951.1| UvrABC system protein C [Bacillus cereus R309803] Length = 594 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 175/611 (28%), Positives = 295/611 (48%), Gaps = 43/611 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 12 LPDQPGCYLMKDKQGTIIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI L+DDK++P+I IT K P L R+ +G YFGP+ Sbjct: 71 NLEALILELNLIKKHDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T L R + LR C + + CL + + +C PC E++ E+ E V Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCTNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E KFL+GG+ ++ ++ M A+ K ++E A RD++A + I I + Sbjct: 186 EIIKFLNGGHKEIRSELETKMYDASEKLEFERAKELRDQIAHMDAIMEKQKMIMSDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ E + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 I++ + + + +V+ T PK+G+K+ ++E A NA + Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ K+ + RIE +DNS+I G + V M+ + K +YRK+ + Sbjct: 359 EERTIKAVENLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++ +K PD++++DGGKG L+A Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------SPLPDLIVIDGGKGHLAA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A +L+ +L + I + + K K E ++L Y +QR++DE Sbjct: 462 ASDILENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVLLERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K+ S LD+I GIG RK++LL+ FG++K + +S G+ Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKILLKHFGSLKKMKEASVTEFVEA-GMP 577 Query: 597 KKIACKIYNHF 607 K +A IY + Sbjct: 578 KNVAETIYTYL 588 >gi|189500701|ref|YP_001960171.1| excinuclease ABC subunit C [Chlorobium phaeobacteroides BS1] gi|189496142|gb|ACE04690.1| excinuclease ABC, C subunit [Chlorobium phaeobacteroides BS1] Length = 628 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 180/629 (28%), Positives = 282/629 (44%), Gaps = 52/629 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVYQ + G V+YVGKA NL+ R+ SY + + + + + I++I +T Sbjct: 13 SLPSSPGVYQFKNARGNVIYVGKAKNLRSRVLSYFRNHSQLSGKTLVLAGHIDDIEVILT 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +EVEAL+LE N+IK LKPR+NI L+DDK++PY++IT K P ++ R+ +YFG Sbjct: 73 SSEVEALILENNLIKELKPRYNINLKDDKTYPYLVIT-KEPFPRIFLTREVRQDGSTYFG 131 Query: 124 PFASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 P+ + + + R+ L+ +++ + CL + I +C GPC G S E Sbjct: 132 PYTETRQLRSVLELISSIFHVRSCRLKLTPENIRNKKFSVCLDYHIHKCKGPCEGFQSEE 191 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y V E + L G L + M Q + +E A + ++ L + Sbjct: 192 DYNRMVSEIIRLLKGKTSELVGSLREEMKQCAAELKFEQAAELKLQIDGLMKYTERQKVV 251 Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D F + + AC G+ G+ + E A +LS FL+++Y Sbjct: 252 TTDPVDRDVFGIERMGDNACGVVFKIREGKLLGSQRMYFSNMEEEPTANLLSGFLKKYYL 311 Query: 296 DKP--CPENILLSEEAEETS------LLEISFFKQY--GYKVKITVPKQGEKRKIIEQAL 345 + P P+ I E L ++ V P+ GEK ++++ Sbjct: 312 ETPGLIPQEIFTQEALPAEDKASLLKLFSKKHKEEKKGRKSVHFVTPRIGEKARLVDMCR 371 Query: 346 INAHRSHTQKLSTEISH------QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCM 399 NA ++ L+ + L + L P RIE +DNSH G M Sbjct: 372 ENARHHLSEYLTEKQKRGELAQENPALTALQETLHLDKKPLRIECFDNSHFQGSDYTSSM 431 Query: 400 VVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS 459 V K++Y+KF L + DD A M + RR+S + NE Sbjct: 432 VCFVNGKPRKSEYKKFRLRT--IDGSDDYAAMSEAITRRYSGTLSNE------------- 476 Query: 460 FPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALV 519 PD++++DGGKGQ++ A L K + + +I +AK + E +F + Sbjct: 477 -LPLPDLIVIDGGKGQVNVAWKTLSKTGIS--VPVIGLAKRLE-----EIYFPSSRDPYN 528 Query: 520 LNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTV 578 L P L +QR+RDEAHRFAIT HR RK + + L EI GIG LL FG++ Sbjct: 529 LPKTSPALKLLQRIRDEAHRFAITYHRTLRKSRTLTTILTEIPGIGEKSAMKLLSHFGSI 588 Query: 579 KMISRSSPETLASIEGISKKIACKIYNHF 607 + I+++ + L I G + A I F Sbjct: 589 EQIAKADRKELMKITG--PRTAEAIALFF 615 >gi|229019738|ref|ZP_04176543.1| UvrABC system protein C [Bacillus cereus AH1273] gi|229025964|ref|ZP_04182353.1| UvrABC system protein C [Bacillus cereus AH1272] gi|228735334|gb|EEL85940.1| UvrABC system protein C [Bacillus cereus AH1272] gi|228741555|gb|EEL91750.1| UvrABC system protein C [Bacillus cereus AH1273] Length = 594 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 177/611 (28%), Positives = 295/611 (48%), Gaps = 43/611 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 12 LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI L+DDK++P+I IT K P L R+ +G YFGP+ Sbjct: 71 NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T L R + LR C++ + CL + + +C PC E++ E+ E V Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E KFL+GG+ ++ ++ M +A+ K ++E A RD++A + I I + Sbjct: 186 EIIKFLNGGHKEVRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ E + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 I++ + + + +V+ T PK+G+K+ ++E A NA + Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E + + K+ + RIE +DNS+I G + V M+ + K +YRK+ + Sbjct: 359 EERTVKAIDNLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++ +K PD++I+DGGKG L+A Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------LPLPDLIIIDGGKGHLAA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 VL+ +L + I + + K K E ++L Y +QR++DE Sbjct: 462 TSDVLENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K+ S LD+I GIG RK++LL+ FG++K + +S G+ Sbjct: 519 HRFAITFHRQLHGKSIIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASIAEFVEA-GMP 577 Query: 597 KKIACKIYNHF 607 K +A IY + Sbjct: 578 KNVAETIYTYL 588 >gi|42783693|ref|NP_980940.1| excinuclease ABC subunit C [Bacillus cereus ATCC 10987] gi|81408957|sp|Q72ZM1|UVRC_BACC1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|42739622|gb|AAS43548.1| excinuclease ABC, C subunit [Bacillus cereus ATCC 10987] Length = 594 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 177/611 (28%), Positives = 297/611 (48%), Gaps = 43/611 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 12 LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI L+DDK++P+I IT K P L R+ +G YFGP+ Sbjct: 71 NLEALILELNLIKKHDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T L R + LR C++ + CL + + +C PC E++ E+ E V Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E KFL+GG+ ++ ++ M +A+ K ++E A RD++A + I I + Sbjct: 186 EIIKFLNGGHKEVRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ E + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 I++ + + + +V+ T PK+G+K+ ++E A NA + Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ K+ + RIE +DNS+I G + V M+ + K +YRK+ + Sbjct: 359 EERTIKAVENLGKRLGIETP-HRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++ +K PD++I+DGGKG L+A Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------LPLPDLIIIDGGKGHLAA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A +L+ +L + I + + K K E ++L Y +QR++DE Sbjct: 462 ASDILENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K+ S LD+I GIG RK++LL+ FG++K + +S G+ Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKILLKHFGSLKKMKEASVTEFVEA-GMP 577 Query: 597 KKIACKIYNHF 607 K +A IY + Sbjct: 578 KNVAETIYTYL 588 >gi|108804832|ref|YP_644769.1| excinuclease ABC subunit C [Rubrobacter xylanophilus DSM 9941] gi|119367830|sp|Q1AUH1|UVRC_RUBXD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|108766075|gb|ABG04957.1| Excinuclease ABC subunit C [Rubrobacter xylanophilus DSM 9941] Length = 611 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 208/619 (33%), Positives = 314/619 (50%), Gaps = 32/619 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFTVT 63 +P PGVY D GRVLYVGKA N++ R+ SY + +I + ++ I F Sbjct: 11 HLPASPGVYIFRDGEGRVLYVGKARNIRSRVASYFTRSGDGRPKIAELRERVRQIDFIAA 70 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 E EAL+LEAN+IKR +PRFN LRDDKS+PYI++T + P ++ R + YFG Sbjct: 71 RGETEALVLEANLIKRHRPRFNASLRDDKSYPYIVVTTGDEYPRVFATRGPHDPRHRYFG 130 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTR-PCLLFQIKRCSGPCTGEISSEKYME 182 PF S +V T++ L +TF R C R+ PCL + I R + PC G +S E+Y Sbjct: 131 PFPSAGSVHATLDVLNKTFRFRKCRGPEPGRRSGIPCLNYHIGRSAAPCIGAVSKEEYGA 190 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--- 239 + + FL G L + M +A + D+E A RD AAL H+++ + Sbjct: 191 IIADVIAFLEGRVDGLIREREEQMRRAAAEMDFERAARLRDEAAALRHVRDRQQATIASE 250 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 + D Y AC+Q G+ G +F L E + F+ Q+Y Sbjct: 251 DSFDAVGAYAEGEEACVQIFAVREGRIVGRDSFLLDNYGEQDAESVALSFVPQYYETAAV 310 Query: 300 PENILLSEEAEET-SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P +L+S EE + + + G +V++ P++G+KR+++E AL NA + + Sbjct: 311 PREVLVSSPDEEALAPIAEHLSRLRGTRVEVRRPQRGDKRRVLELALHNARMGLEHERAM 370 Query: 359 EISHQMI----LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + + L ++ ALP +P RIE YD S+ MG ++V MVV K+QYR+ Sbjct: 371 SEARRSRLSSTLDRLREELALPRLPMRIECYDISNTMGTNSVASMVVFQGGRPAKDQYRR 430 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + V+ DD A M V+ RR +L+ +E F PD+++LDGGKG Sbjct: 431 FRIKT--VEGADDPASMAEVVRRRLERLLAGDE-----------KFSPAPDLILLDGGKG 477 Query: 475 QLSAAQGVLKKLNVEN---RITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 QLSA VL+ L I + ++AK + E F + +VL L +Q Sbjct: 478 QLSAVAEVLEGLGSGGRLPDIPVRALAKREE-----EVFEPGRPGPVVLAPDSAELRLLQ 532 Query: 532 RLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 R+RDEAHRFA HRK R + S LD++ G+GP+RKR +L+ FGT + +S E L Sbjct: 533 RVRDEAHRFANAYHRKLRGRAMTASVLDDLPGVGPVRKRRILEHFGTPQAFLEASLEELE 592 Query: 591 SIEGISKKIACKIYNHFHK 609 ++ G+ ++A +I+ H+ Sbjct: 593 AVPGLPGRVAREIHARLHR 611 >gi|91199963|emb|CAJ73005.1| similar to uvrABC system protein C (UvrC exinuclease) [Candidatus Kuenenia stuttgartiensis] Length = 610 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 195/619 (31%), Positives = 311/619 (50%), Gaps = 29/619 (4%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIR 59 + + +P PGVY M D +V+YVGKA NL+ R++SY ++I + +I Sbjct: 5 LKLKNVPVSPGVYLMKDAKHKVIYVGKAKNLKNRVRSYFQKGTGDRLYTEYLIKHVVDID 64 Query: 60 FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG 119 F +T TE EAL+LE N IK+ KP+FNI LRDDK+F I + P R Sbjct: 65 FVLTETEKEALILENNFIKQFKPKFNINLRDDKNFLCIKLETNKDFPYPKVVRQKEDDGA 124 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 YFGP+AS AV +T+ + T +R C D+ F+ RT+PCL +QI +C GPC G I Sbjct: 125 MYFGPYASARAVRETLRYINDTIPVRKCRDNAFKSRTKPCLYYQIHKCLGPCCGLIDRAG 184 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI- 238 Y + + L G +L + + M + + + YE A RD++ ++ Sbjct: 185 YKTLIDQVILLLKGKQEDLISILRKQMYEESKQLRYEKAAKLRDQIQSIEQTVEKQRINS 244 Query: 239 --YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + D F Y N I+ F G ++ L + + S+ + + Sbjct: 245 LTFIDRDVFGYYLTDNDVYIEVMFIRSGNMEDIASYRLSINHTTIEEVFRSFLNQFYSQT 304 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 + P +++ + + LLE ++ G KV + PK+G+K ++IE A NA ++ Sbjct: 305 RFIPSEVIIPVNSPDAVLLEEWLTERKGKKVSVFCPKRGDKLRLIEMAQKNAMNAYKVSQ 364 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + + ++ L+ L ++P+RIE +D S+I G AVG MV K++Y++F Sbjct: 365 TQDDNYSRTLQALKDVIGLRNLPERIECFDISNIFGKQAVGSMVTFKCGMPDKSKYKRFR 424 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + V DD AMM VL RR+ + ++ + PD+V++DGGKGQL Sbjct: 425 IKT--VDQIDDYAMMHEVLLRRYKRAVEEGD---------------LPDLVMVDGGKGQL 467 Query: 477 SAAQGVLKKLNVENRITIISIAKG------PKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 A V ++L + + +++++K PK G + ++L P+L F+ Sbjct: 468 GVALRVFEELAINDT-DLLALSKDRGKSGIPKGEQGEQVHAPHIPHPILLPSSSPVLLFL 526 Query: 531 QRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 ++RDEAHRFAI HRK R K SPLDEI GIG +RK+ L++ FG+++ I ++ L Sbjct: 527 AKIRDEAHRFAIAYHRKLRDKEYYKSPLDEIPGIGIIRKKALIKRFGSIEGIRNATINQL 586 Query: 590 ASIEGISKKIACKIYNHFH 608 I + K+A ++YNHFH Sbjct: 587 TEIGKLPAKLANEVYNHFH 605 >gi|229072023|ref|ZP_04205233.1| UvrABC system protein C [Bacillus cereus F65185] gi|228711182|gb|EEL63147.1| UvrABC system protein C [Bacillus cereus F65185] Length = 594 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 177/611 (28%), Positives = 295/611 (48%), Gaps = 43/611 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 12 LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI L+DDK++P+I IT K P L R+ +G YFGP+ Sbjct: 71 NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T L R + LR C + + CL + + +C PC E++ E+ E V Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCTNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 + KFL+GG+ ++ ++ M +A+ K ++E A RD++A + I I + Sbjct: 186 KIIKFLNGGHKEVRSELEIKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ E + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 I++ + + + +V+ T PK+G+K+ ++E A NA + Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E + K+ + RIE +DNS+I G + V M+ + K +YRK+ + Sbjct: 359 EERTIKAVDHLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++ +K PD++I+DGGKG L+A Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------SPLPDLIIIDGGKGHLAA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A +L+ +L + I + + K K E ++L Y +QR++DE Sbjct: 462 ASDILENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K+ S LD+I GIG RK++LL+ FG++K + +S E G+ Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASIEEFVEA-GMP 577 Query: 597 KKIACKIYNHF 607 K +A IY + Sbjct: 578 KNVAETIYTYL 588 >gi|85858550|ref|YP_460752.1| nuclease subunit of the excinuclease complex [Syntrophus aciditrophicus SB] gi|119367849|sp|Q2LR71|UVRC_SYNAS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|85721641|gb|ABC76584.1| nuclease subunit of the excinuclease complex [Syntrophus aciditrophicus SB] Length = 618 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 197/620 (31%), Positives = 308/620 (49%), Gaps = 34/620 (5%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 P PGVY M D AG++LYVGKA NL+ R ++Y + I ++S+I++I F +T TE Sbjct: 14 PRTPGVYLMKDAAGKILYVGKAKNLKSRTRAYFSGTDSRAMIPFLVSRIHDIEFILTETE 73 Query: 67 VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126 EAL+LE N+IK PR+NI RDDK++ I P R YFGP+ Sbjct: 74 KEALILENNLIKEHHPRYNICFRDDKAYFNIRADLNEPFPRFQLVRRPRKDGAKYFGPYP 133 Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186 S + +T+ LQ F LR+C D+ + RTRPCL +QIKRC PC G I+SE Y++ V + Sbjct: 134 SSASARETLQFLQSIFPLRTCRDAELKSRTRPCLEYQIKRCLAPCVGRINSEDYLQMVRD 193 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNRMD 243 FL G +NL ++ M A + +YE A RDR+ A+ + D Sbjct: 194 GVSFLEGRGNNLLRELRERMKMAAEQMNYEEAAFLRDRIRAIEETLERQRMVSMTFKDQD 253 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303 F LY +L + G+ G+ L T + S ++ + P+ I Sbjct: 254 IFGLYREGHLIQVCILLIRQGKILGSRLLPLLKFEGETADMLSSLLMQYYDQSVDIPQEI 313 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 L+ E+ ++ ++ G + I +P++G +++ A NA + + Sbjct: 314 LIPASIEDRQVIREWLEEKRGKGLSILIPRKGRGLELLHIAEQNAEHGFKMERKSLDDSD 373 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 L+ ++ L P++IE +D S+I G AV MV + +K+ YR+F + V Sbjct: 374 ESLRLLMERLHLRRFPRKIEAFDISNIGGRLAVAAMVTFQDGRPLKSGYRRFRIRT--VH 431 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD AMM L+RR+ + PD++++DGGKGQL+ A +L Sbjct: 432 GADDYAMMYEALKRRYQ------------------GKENLPDLIVVDGGKGQLAVAFSLL 473 Query: 484 KKLNVENRITIISIAK---------GPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 K L++ + +I +AK G + + K EAL L+ +L+ +QR+R Sbjct: 474 KDLSISGQ-DVIGLAKERVNGVTVQGGVNKSEDRVYLPHKKEALYLSRWPAVLFLLQRIR 532 Query: 535 DEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DEAHRFA++ HR + ++ + S LD+I G+G +RK+ LL SFG + I ++ E L +E Sbjct: 533 DEAHRFAVSYHRSLKTRSDFMSLLDDIPGVGEVRKKALLLSFGDLARIREATVEELTQVE 592 Query: 594 GISKKIACKIYNHFHKNTSH 613 GI K + KI+ H + Sbjct: 593 GIGKDLGEKIHAFLHNDQRS 612 >gi|126652659|ref|ZP_01724820.1| excinuclease ABC subunit C [Bacillus sp. B14905] gi|126590508|gb|EAZ84626.1| excinuclease ABC subunit C [Bacillus sp. B14905] Length = 596 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 176/617 (28%), Positives = 287/617 (46%), Gaps = 39/617 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+ PG Y M D G ++YVGKA L+ R++SY H + ++S+I + + Sbjct: 8 KLDILPDQPGCYLMKDRQGTIIYVGKAKVLKNRVRSYFTGT-HEGKTQRLVSEIEDFEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EAL+LE N+IK P++N++L DDK++PY+ IT+ K P L R + Y Sbjct: 67 VTSSNIEALILELNLIKLHDPKYNVMLTDDKTYPYLKITN-EKHPRLITTRKVKKDKAKY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + A +T L R + LR + ++ CL + + +C PC +I Y Sbjct: 126 FGPYPNAYAASETKKLLDRLYPLRK----CVQLPSKVCLYYHMGQCIAPCVKQIDGHVYQ 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---I 238 E + + KFL+GG +K+++ M A ++E A RD++A + + Sbjct: 182 EMIEDMTKFLNGGVEAVKKELEIKMLAAAENLEFERAKEFRDQIAHIDTVMQKQKIVSSD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F K C+Q F G+ ++ + + Sbjct: 242 TTNRDIFGYAVEKGWMCVQVFFVRQGKLIERDVSIFPIYQDAEEEFLTFVGRFYEKPEHI 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P+ + + + + L E+ K PK+G+K+++++ A NA + + K Sbjct: 302 KPKEVFIPQAIDGAILTELLGIKVLT-------PKRGQKKELVDLATKNAEIAVSAKFQL 354 Query: 359 EISHQMIL---KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 + + P RIE +DNSH+ G AV MVV + K +YRK+ Sbjct: 355 IERQEERTIGACEALGDAMGITTPLRIEAFDNSHMHGTDAVSAMVVFIDGKPAKKEYRKY 414 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 DD M+ V+ RR+ +++K PD+V++DGGKGQ Sbjct: 415 KTRTA--AKHDDYGAMQEVIRRRYIRVLKEG--------------LPLPDLVLIDGGKGQ 458 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 + A+ VL+ + I I +AK K + F E + L Y +QR++D Sbjct: 459 MEVAREVLED-ELGLVIPIAGLAKDDKHNTSQ-LLFGDPPEVIALKRTSDGFYLLQRIQD 516 Query: 536 EAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E HRFAIT R++ +K A S LD+I G+GP RK+ LL+ FG+VK I +S L G Sbjct: 517 EVHRFAITFLRQQHEKHAIQSVLDQIEGVGPKRKQQLLKHFGSVKKIREASELALQEA-G 575 Query: 595 ISKKIACKIYNHFHKNT 611 + +A IY +F + T Sbjct: 576 MPANLANHIYAYFQQET 592 >gi|75762575|ref|ZP_00742428.1| Excinuclease ABC subunit C [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228903037|ref|ZP_04067176.1| UvrABC system protein C [Bacillus thuringiensis IBL 4222] gi|74489937|gb|EAO53300.1| Excinuclease ABC subunit C [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228856630|gb|EEN01151.1| UvrABC system protein C [Bacillus thuringiensis IBL 4222] Length = 594 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 177/610 (29%), Positives = 292/610 (47%), Gaps = 41/610 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 12 LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI L+DDK++P+I IT K P L R+ +G YFGP+ Sbjct: 71 NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T L R + LR C + + CL + + +C PC E++ E+ E V Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCTNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E KFL+GG+ ++ ++ M +A+ K ++E A RD++A + I I + Sbjct: 186 EIIKFLNGGHKEVRSELEIKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ E + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 I++ + + + +V+ T PK+G+K+ ++E A NA + Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E + K+ + RIE +DNS+I G + V M+ + K +YRK+ + Sbjct: 359 EERTIKAVDHLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++ +K PD++I+DGGKG L+A Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------LPLPDLIIIDGGKGHLAA 461 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A +L+ + I + + K K E +VL Y +QR++DE H Sbjct: 462 ASDILED-ELGLYIPMAGLVKDDKHKTSH-LIIGDPPEPVVLERNSQEFYLLQRIQDEVH 519 Query: 539 RFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ K+ S LD+I GIG RK++LL+ FG++K + +S G+ K Sbjct: 520 RFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASVAEFVEA-GMPK 578 Query: 598 KIACKIYNHF 607 +A IY + Sbjct: 579 NVAETIYTYL 588 >gi|110596791|ref|ZP_01385081.1| excinuclease ABC, C subunit [Chlorobium ferrooxidans DSM 13031] gi|110341478|gb|EAT59938.1| excinuclease ABC, C subunit [Chlorobium ferrooxidans DSM 13031] Length = 637 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 182/634 (28%), Positives = 295/634 (46%), Gaps = 52/634 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRF 60 +P PGVYQ ++ GRV+YVGKA NL+ R++SY + + ++S I+N Sbjct: 30 KLSSLPSSPGVYQFINDKGRVIYVGKAKNLRNRVRSYFRNPQQLFGKTLVLVSHIDNFEV 89 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +EVEAL+LE N+IK LKPR+N+ L+DDK++PY++IT+ P ++ R + Sbjct: 90 IITSSEVEALILENNLIKELKPRYNVNLKDDKTYPYLVITN-EPFPRIFLTRQVRRDGST 148 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCAD-----SVFRHRTRPCLLFQIKRCSGPCTGEI 175 +FGP+ + ++ L F +RSC ++ H+ + CL + I +C GPC G Sbjct: 149 WFGPYTEAGQLRTILDLLGSIFPIRSCKHRLSPENIAAHKFKVCLDYHIHKCKGPCEGLQ 208 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 S E+Y+ + E + L G + + M + +E A + +L +L Sbjct: 209 SEEEYLLMIGEIIRLLKGRTSAMIRTLTERMQYFAAELKFEQAAELKAQLDSLKRYAERQ 268 Query: 236 DSIYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 + D F++ ++ AC G+ G+ ++ S + + S L + Sbjct: 269 KVVSGDALDRDVFAVASGEDDACGVVFKIREGKLLGSQRIYMNNTSGESEEVLQSRVLEK 328 Query: 293 FYTD--KPCPENILLSEEAEETSLLE--------ISFFKQYGYKVKITVPKQGEKRKIIE 342 +Y + + P+ ILL + + KQ +++ VP+ GEK ++E Sbjct: 329 YYLETLELIPDEILLRKPLTDEEESALRALLTEKQKEEKQEKKQIRFLVPQIGEKAHLME 388 Query: 343 QALINAHRSHTQKLSTEISHQMILKD------FTKKFALPHIPKRIEIYDNSHIMGCSAV 396 NA + L + ++ + L IP+RIE +DNSH+ G V Sbjct: 389 MCHQNARHHLEEYLIQKQKRGEAAREHYGLIALKELLHLSVIPQRIECFDNSHLQGTDYV 448 Query: 397 GCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQ 456 MV + K+ YRKF L + DD A M V+ RR+ + E Sbjct: 449 SSMVCFEKGKPKKSDYRKFKLKS--FQGSDDYAAMEEVIHRRYGGSLARE---------- 496 Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE 516 + PD++I+DGGKGQ++ A L L + +I +AK + E F + Sbjct: 497 ----LALPDLIIVDGGKGQVNTAFTALNALGISC--PVIGLAKRIE-----EIFTPHAPD 545 Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSF 575 L P L +Q+LRDEAHRFA+T HRK R ++ + L I GIG LL+ F Sbjct: 546 PFNLPKTSPALKLLQQLRDEAHRFAVTYHRKLRTERTLQTELTTIEGIGEKTAFKLLKQF 605 Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 G+ +SR++ E L + G K A +Y +H Sbjct: 606 GSADAVSRATIEELQAATG--AKSAQAVYLFYHP 637 >gi|194017145|ref|ZP_03055757.1| excinuclease ABC, C subunit [Bacillus pumilus ATCC 7061] gi|194011013|gb|EDW20583.1| excinuclease ABC, C subunit [Bacillus pumilus ATCC 7061] Length = 590 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 174/608 (28%), Positives = 291/608 (47%), Gaps = 33/608 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D V+YVGKA L+ R++SY + H + ++S+I + + VT + Sbjct: 12 LPDQPGCYLMKDRQNTVIYVGKAKVLKNRVRSYFTGS-HDAKTQRLVSEIEDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++N++L+DDK++P+I IT+ + P L R +G YFGP+ Sbjct: 71 NIEALILELNLIKKYDPKYNVMLKDDKTYPFIKITN-ERHPKLIVTRHVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A +T L R + LR CA R CL + + +C PC +IS E + V Sbjct: 130 PNVQAARETKKLLDRLYPLRKCATLP----DRVCLYYHLGQCLAPCVYDISEETNKQLVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRM 242 E +FL+GG+ +K+++ MN+A + ++E A RD++A + + Sbjct: 186 EIIRFLNGGHQQIKKELTEKMNEAAEQLEFERAKELRDQIAYIDSTMEKQKMTMSDLSDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ ++K C+Q F G+ + + + P+ Sbjct: 246 DVFAYAYDKGWMCVQVFFIRQGKLIERDVSLFPMYQDPEEEFLTFMGQFYAKNNHFLPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 IL+ + ++ + ++ + K + + AL + E Sbjct: 306 ILVPDSVDQEMIEQLLETNVHQPKKGKKKDLLLLAHQNAKIAL---KEKFSLIERDEERS 362 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 +K + ++P RIE +DNS+I G V MVV + K +YRK+ + V Sbjct: 363 IGAVKQLGDALNI-YMPYRIEAFDNSNIQGADPVSAMVVFQDGKPYKKEYRKYKIKT--V 419 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD A MR V+ RR+++++K+E PD++++DGGKGQ++AA V Sbjct: 420 TGPDDYASMREVIRRRYTRVLKDE--------------LPLPDLILIDGGKGQINAAIDV 465 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 L + + + + + K K E + L Y +QR++DE HRFAI Sbjct: 466 L-ENELNLSVPVAGLVKDEKHRTSN-LMMGDTLEIVALERNSQAFYLLQRIQDEVHRFAI 523 Query: 543 TTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 + HR+ R K A S LD++ GIG RK+ LL+ FG+VK + +S + GI K+ A Sbjct: 524 SFHRQLRGKNAFQSILDDVPGIGEKRKKQLLKHFGSVKKMKEASIQDFQEA-GIPKQTAE 582 Query: 602 KIYNHFHK 609 + K Sbjct: 583 LLMEALKK 590 >gi|295132065|ref|YP_003582741.1| UvrABC system protein C [Zunongwangia profunda SM-A87] gi|294980080|gb|ADF50545.1| UvrABC system protein C [Zunongwangia profunda SM-A87] Length = 600 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 181/629 (28%), Positives = 305/629 (48%), Gaps = 52/629 (8%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + +P+ PGVYQ D G++LYVGKA NL+KR+ SY + +HRI M+ +I+ IR Sbjct: 8 VQLKTLPDSPGVYQYFDKNGKILYVGKAKNLKKRVTSYFTKRHDSHRIGVMVKKIHEIRH 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V +E +ALLLE N+IK+L+PRFN++L+DDK++P+I I + P ++ R Sbjct: 68 IVVSSETDALLLENNLIKKLQPRFNVMLKDDKTYPWICI-KNERFPRVFPTRRLIKDGSE 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175 Y+GPF S V ++ ++ + LR+C D + ++ + CL + + C GPC G Sbjct: 127 YYGPFTSFKTVNTLLDLIKGLYKLRTCNYDLVEDKIRDNKYKVCLEYHLGNCKGPCEGYQ 186 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 +Y + ++ + G + + M + ++E A ++++ L + Q+ + Sbjct: 187 GEAEYNRNIEHIRQIVKGNFKDSLSQFREQMQEHAENMEFEDAQRIKNKIEVLENYQSRS 246 Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 N +D FS+ ++ + G + T +K + T+ ++L + + Sbjct: 247 TVVNPKINNVDVFSVISDEGYGYVNFLQLMHGSIIRSHTIEMKKKLDETDEELLELGITE 306 Query: 293 FYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 I + + + +K+TVPK G+KRKI+E + NA Sbjct: 307 IRQRFNSKSPEIYVPFKVDAGD------------DIKVTVPKLGDKRKIVELSERNAKYY 354 Query: 352 HTQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405 ++ + ++ + L P+ IE +DNS+I G + V VV Sbjct: 355 RQERFKQMKIVDPDRHVNRVMAQMKEDLRLSVEPRHIECFDNSNIQGTNPVAACVVFKNG 414 Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465 K YRKFN+ V+ +D A M V+ RR+ +L+ E L P Sbjct: 415 KPSKKDYRKFNIKT--VEGPNDFASMEEVVYRRYKRLLNEGEEL--------------PQ 458 Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525 ++I+DGGKGQL + L+ L + + II IAK + E F+ L L+ + Sbjct: 459 LIIVDGGKGQLRSGLKALETLGLRGEVAIIGIAKRLE-----ELFYPGDPVPLYLDKKSE 513 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 L IQ+LR+EAHRF IT HR +R K+ + LD I GIG LL+SF ++K + + Sbjct: 514 TLKIIQQLRNEAHRFGITFHRNKRSKSALNTELDSIKGIGEKTVVELLKSFRSLKRVKEA 573 Query: 585 SPETLASIEGISKKIACKIYNHFHKNTSH 613 S ++LA + G A +Y+++H +S Sbjct: 574 SEKSLADVVG--SAKARIVYDYYHPESSE 600 >gi|218899675|ref|YP_002448086.1| excinuclease ABC, C subunit [Bacillus cereus G9842] gi|226695572|sp|B7IJ18|UVRC_BACC2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|218542605|gb|ACK94999.1| excinuclease ABC, C subunit [Bacillus cereus G9842] Length = 594 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 177/610 (29%), Positives = 292/610 (47%), Gaps = 41/610 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 12 LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI L+DDK++P+I IT K P L R+ +G YFGP+ Sbjct: 71 NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T L R + LR C + + CL + + +C PC E++ E+ E V Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCTNMP----DKVCLYYHMDQCLAPCVKEVTEEQNKEIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E KFL+GG+ ++ ++ M +A+ K ++E A RD++A + I I + Sbjct: 186 EIIKFLNGGHKEVRSELEIKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ E + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 I++ + + + +V+ T PK+G+K+ ++E A NA + Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E + K+ + RIE +DNS+I G + V M+ + K +YRK+ + Sbjct: 359 EERTIKAVDHLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++ +K PD++I+DGGKG L+A Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------LPLPDLIIIDGGKGHLAA 461 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A +L+ + I + + K K E +VL Y +QR++DE H Sbjct: 462 ASDILED-ELGLYIPMAGLVKDDKHKTSH-LIIGDPPEPVVLERNSQEFYLLQRIQDEVH 519 Query: 539 RFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ K+ S LD+I GIG RK++LL+ FG++K + +S G+ K Sbjct: 520 RFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASVAEFVEA-GMPK 578 Query: 598 KIACKIYNHF 607 +A IY + Sbjct: 579 NVAETIYTYL 588 >gi|297583696|ref|YP_003699476.1| excinuclease ABC subunit C [Bacillus selenitireducens MLS10] gi|297142153|gb|ADH98910.1| excinuclease ABC, C subunit [Bacillus selenitireducens MLS10] Length = 593 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 179/614 (29%), Positives = 292/614 (47%), Gaps = 41/614 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P PG Y M + V+YVGKA L+ R++SY + H + ++S+I + + Sbjct: 7 KLDLLPAQPGCYLMKNKHQTVIYVGKAKVLKNRVRSYFTGS-HDQKTQMLVSEIADFEYI 65 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT +E+EALLLE N+IK+ +PR+N+LL+DDKS+P+I IT++ P L R+ Y Sbjct: 66 VTSSEIEALLLEQNLIKKHEPRYNVLLKDDKSYPFIKITNEE-HPRLITTRNVKKDGAKY 124 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + + +T L R + LR C R CL + I +C PC E+++++ Sbjct: 125 FGPYPNAYSANETKKLLDRIYPLRKCRTLP----DRVCLYYHIGQCLAPCEFEVTADQNK 180 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 V + KFL+GG+ +KE I + M +A+ + ++E A RD++ + ++ Sbjct: 181 TMVQDITKFLNGGHKEVKESIEKKMYEASEEMNFERAKELRDQMVHIENVMEKQKITIAD 240 Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F +K C+Q F G+ E + Sbjct: 241 QTNRDVFGFEVDKGWMCVQVFFVRQGKLIERDVSLFPVYQEPVDDFYTFIGQFYLEEHHK 300 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQ 354 P I + + + + K PK+G+K+++++ A NA Sbjct: 301 KPNEIFVQSGVDTGLVSDFLDVKVLE-------PKRGQKKELVDLARKNASISLKEKFDL 353 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 E +++ + + RIE +DNS+I G V MV + K YRK Sbjct: 354 IEKNEKKTIHAIQELGQVMKIDTP-YRIEAFDNSNIQGVDPVSAMVSFLDGKPDKKNYRK 412 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V+ DD MR V+ RR+ +L+ E+ L PD++++DGGKG Sbjct: 413 YKVKT--VQGPDDYESMREVIRRRYKRLLTEEQPL--------------PDLIVIDGGKG 456 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q+SAAQ VL+ + I + + K K E + L Y +QR++ Sbjct: 457 QISAAQSVLED-ELGQTIPVCGLVKDDKHRTSQ-LMAGDPPEVISLKRTSEAFYLLQRIQ 514 Query: 535 DEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR RKK+ + S LD+++GIG RKR LL++FG++K I ++S E + Sbjct: 515 DEVHRFAITFHRNVRKKSQFQSILDDVDGIGEKRKRTLLKTFGSLKRIKQASVEEIERA- 573 Query: 594 GISKKIACKIYNHF 607 GI + +A + Sbjct: 574 GIPQSVASALKRAI 587 >gi|218235241|ref|YP_002369315.1| excinuclease ABC subunit C [Bacillus cereus B4264] gi|226695573|sp|B7HF33|UVRC_BACC4 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|218163198|gb|ACK63190.1| excinuclease ABC, C subunit [Bacillus cereus B4264] Length = 594 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 178/611 (29%), Positives = 295/611 (48%), Gaps = 43/611 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 12 LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI L+DDK++P+I IT K P L R+ +G YFGP+ Sbjct: 71 NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T L R + LR C + + CL + + +C PC E++ E+ E V Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCTNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E KFL+GG+ ++ ++ M +A+ K ++E A RD++A + I I + Sbjct: 186 EIIKFLNGGHKEVRSELEIKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ E + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 I++ + + + +V+ T PK+G+K+ ++E A NA + Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E + K+ + RIE +DNS+I G + V M+ + K +YRK+ + Sbjct: 359 EERTIKAVDHLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++ +K PD++I+DGGKG L+A Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------SPLPDLIIIDGGKGHLAA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A +L+ +L + I + + K K E ++L Y +QR++DE Sbjct: 462 ASDILENELGLY--IPMAGLVKDDKHKTSH-LIIGVPPEPVMLERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K+ S LD+I GIG RK++LL+ FG++K + +S E G+ Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASIEEFVEA-GMP 577 Query: 597 KKIACKIYNHF 607 K +A IY + Sbjct: 578 KNVAETIYTYL 588 >gi|228967613|ref|ZP_04128636.1| UvrABC system protein C [Bacillus thuringiensis serovar sotto str. T04001] gi|228792104|gb|EEM39683.1| UvrABC system protein C [Bacillus thuringiensis serovar sotto str. T04001] Length = 594 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 178/611 (29%), Positives = 294/611 (48%), Gaps = 43/611 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 12 LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI L+DDK++P+I IT K P L R+ +G YFGP+ Sbjct: 71 NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T L R + LR C + + CL + + +C PC E++ E+ E V Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCTNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E KFL+GG+ ++ ++ M +A+ K ++E A RD++A + I I + Sbjct: 186 EIIKFLNGGHKEVRSELEIKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ E + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 I++ + + + +V+ T PK+G+K+ ++E A NA + Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E + K+ + RIE +DNS+I G + V M+ + K +YRK+ + Sbjct: 359 EERTIKAVDHLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++ +K PD++I+DGGKG L+A Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------LPLPDLIIIDGGKGHLAA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A +L+ +L + I + + K K E +VL Y +QR++DE Sbjct: 462 ASDILENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVVLERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K+ S LD+I GIG RK++LL+ FG++K + +S G+ Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASVAEFVEA-GMP 577 Query: 597 KKIACKIYNHF 607 K +A IY + Sbjct: 578 KNVAETIYTYL 588 >gi|163942251|ref|YP_001647135.1| excinuclease ABC subunit C [Bacillus weihenstephanensis KBAB4] gi|229013719|ref|ZP_04170848.1| UvrABC system protein C [Bacillus mycoides DSM 2048] gi|229558014|sp|A9VJI0|UVRC_BACWK RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|163864448|gb|ABY45507.1| excinuclease ABC, C subunit [Bacillus weihenstephanensis KBAB4] gi|228747641|gb|EEL97515.1| UvrABC system protein C [Bacillus mycoides DSM 2048] Length = 594 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 177/611 (28%), Positives = 295/611 (48%), Gaps = 43/611 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 12 LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI L+DDK++P+I IT K P L R+ +G YFGP+ Sbjct: 71 NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T L R + LR C++ + CL + + +C PC E++ E+ E V Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTDEQNKEIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E KFL+GG+ ++ ++ M +A+ K ++E A RD++A + I I + Sbjct: 186 EIIKFLNGGHKEIRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ E + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 I++ + + + +V+ T PK+G+K+ ++E A NA + Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFHLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E + + K+ + RIE +DNS+I G + V M+ + K +YRK+ + Sbjct: 359 EERTVKAIDNLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++ +K PD++I+DGGKG L+A Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------LPLPDLIIIDGGKGHLAA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 VL+ +L + I + + K K E ++L Y +QR++DE Sbjct: 462 TSDVLENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K+ S LD+I GIG RK++LL+ FG++K + +S G+ Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASIAEFVEA-GMP 577 Query: 597 KKIACKIYNHF 607 K +A IY + Sbjct: 578 KNVAEMIYTYL 588 >gi|315634134|ref|ZP_07889423.1| excision endonuclease subunit UvrC [Aggregatibacter segnis ATCC 33393] gi|315477384|gb|EFU68127.1| excision endonuclease subunit UvrC [Aggregatibacter segnis ATCC 33393] Length = 610 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 208/617 (33%), Positives = 340/617 (55%), Gaps = 32/617 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+M D + V+YVGKA +L+KR+ SY ++ + +++ I++I T+T Sbjct: 12 NVPHLPGVYRMYDDSNTVIYVGKAKDLKKRLSSYFRKQLNSKKTEALVASIHHIETTITT 71 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N IK +PR+N+LLRDDKS+PYIL+T K P + +R S IQG YFGP Sbjct: 72 SETEALLLEHNYIKTYQPRYNVLLRDDKSYPYILLT-KETHPRITSYRGSKKIQGEYFGP 130 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183 + + AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RC PC ++ E Y + Sbjct: 131 YPNAGAVRETLSLLQKLFPIRQCENSVYNNRSRPCLQYQIGRCLAPCVKGYVTDEAYAQQ 190 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD 243 V+ A+ FL G + + + + + M QA+ + ++E A RD++ A+ + +R D Sbjct: 191 VNFARLFLQGKDQQVLDHLVKQMEQASQQLNFEEAARVRDQIQAVRAVIEKQFVANDRHD 250 Query: 244 C---FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296 ++ + +AC+Q F G+ G ++F K S + A++ F+ QFY Sbjct: 251 DIDIIAIAYQLGVACVQVLFIRQGKILGNRSYFPKVPSNTNLAELTETFVGQFYLQAHQG 310 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 + P I++ ++ EE + LE Q G KV I +G+K K ++ A +NA + KL Sbjct: 311 RTIPNTIIVDQKLEEKADLETLLSDQAGRKVIIQDHAKGDKSKYLQLAQMNAKAALVTKL 370 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + + I R+E +D SH MG + VV ++G +K+ YR+FN Sbjct: 371 KQSTLQHDRYAALQELLGIDVIK-RMECFDISHTMGEQTIASCVVFNQDGPLKSDYRRFN 429 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + + DD A M L +R+ + ++ ++ PD++ +DGGKGQL Sbjct: 430 I--SGITKGDDYAAMEQALLKRYDKDLEEDK---------------IPDIIFIDGGKGQL 472 Query: 477 SAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQR 532 + A V + L V +NR +I +AKG R AG+E + K + L L L+ IQ Sbjct: 473 NRALQVFENLKVKWNKNRPHLIGVAKGVDRRAGLETLILSKWDKELHLPSDSLALHLIQH 532 Query: 533 LRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+H AI+ HRK+R++ S L+ I G+G R++ LL+ G ++ + ++ + +AS Sbjct: 533 IRDESHNHAISGHRKKRQQHFTQSGLESIEGVGAKRRQALLKYLGGLQGVKNATLDEIAS 592 Query: 592 IEGISKKIACKIYNHFH 608 + GISK +A KI+ Sbjct: 593 VPGISKALAEKIFETLQ 609 >gi|29898156|gb|AAP11430.1| Excinuclease ABC subunit C [Bacillus cereus ATCC 14579] Length = 590 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 178/610 (29%), Positives = 294/610 (48%), Gaps = 43/610 (7%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 P+ PG Y M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 9 PDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSSN 67 Query: 67 VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126 +EAL+LE N+IK+ P++NI L+DDK++P+I IT K P L R+ +G YFGP+ Sbjct: 68 LEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPYP 126 Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186 + + +T L R + LR C + + CL + + +C PC E++ E+ E V E Sbjct: 127 NAQSAHETKKLLDRMYPLRKCTNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVDE 182 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMD 243 KFL+GG+ ++ ++ M +A+ K ++E A RD++A + I I + D Sbjct: 183 IIKFLNGGHKEVRSELEIKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDRD 242 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303 F +K C+Q F G+ E + + P+ I Sbjct: 243 VFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKEI 302 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLSTE 359 ++ + + + +V+ T PK+G+K+ ++E A NA + E Sbjct: 303 VVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERDE 355 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + K+ + RIE +DNS+I G + V M+ + K +YRK+ + Sbjct: 356 ERTIKAVDHLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIKT 414 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 V+ DD MR V+ RR+++ +K PD++I+DGGKG L+AA Sbjct: 415 --VQGPDDYESMREVVRRRYTRALKEN--------------SPLPDLIIIDGGKGHLAAA 458 Query: 480 QGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 +L+ +L + I + + K K E ++L Y +QR++DE H Sbjct: 459 SDILENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEVH 515 Query: 539 RFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ K+ S LD+I GIG RK++LL+ FG++K + +S E G+ K Sbjct: 516 RFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASIEEFVEA-GMPK 574 Query: 598 KIACKIYNHF 607 +A IY + Sbjct: 575 NVAETIYTYL 584 >gi|169829497|ref|YP_001699655.1| excinuclease ABC subunit C [Lysinibacillus sphaericus C3-41] gi|229558449|sp|B1HW86|UVRC_LYSSC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|168993985|gb|ACA41525.1| UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C) [Lysinibacillus sphaericus C3-41] Length = 596 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 176/617 (28%), Positives = 285/617 (46%), Gaps = 39/617 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+ PG Y M D G ++YVGKA L+ R++SY H + ++S+I + + Sbjct: 8 KLDILPDQPGCYLMKDRQGTIIYVGKAKVLKNRVRSYFTGT-HEGKTQRLVSEIEDFEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EAL+LE N+IK P++N++L DDK++PY+ IT+ K P L R + Y Sbjct: 67 VTSSNIEALILELNLIKLHDPKYNVMLTDDKTYPYLKITN-EKHPRLITTRKVKKDKAKY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + A +T L R + LR + ++ CL + + +C PC EI Y Sbjct: 126 FGPYPNAYAASETKKLLDRLYPLRK----CVQLPSKVCLYYHMGQCIAPCVKEIEGHVYQ 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---I 238 E + + KFL+GG +K+++ M A ++E A RD++A + + Sbjct: 182 EMIEDMTKFLNGGVEAVKKELEVKMLAAAENLEFERAKEFRDQIAHIDTVMQKQKIVSSD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F K C+Q F G+ + + + Sbjct: 242 TTNRDVFGYAVEKGWMCVQVFFVRQGKLIERDVSIFPIYQDPEEEFLTFVGRFYEKPEHI 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P+ + + + + L E+ K PK+G+K+++++ A NA + K Sbjct: 302 KPKEVFIPQAIDGAILTELLGIKVLT-------PKRGQKKELVDLATKNAEIAVAAKFQL 354 Query: 359 EISHQMIL---KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 + + P RIE +DNSH+ G AV MVV + K +YRK+ Sbjct: 355 IERQEERTIGACEALGDAMGITTPLRIEAFDNSHMHGTDAVSAMVVFIDGKPAKKEYRKY 414 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 DD M+ V+ RR+ +++K PD+V++DGGKGQ Sbjct: 415 KTRTA--AKHDDYGAMQEVIRRRYIRVLKEG--------------LPLPDLVLIDGGKGQ 458 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 + A+ VL+ + I I +AK K + F E + L Y +QR++D Sbjct: 459 MEVAREVLED-ELGLVIPIAGLAKDDKHNTSQ-LLFGDPPEVIALKRTSDGFYLLQRIQD 516 Query: 536 EAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E HRFAIT R++ +K A S LD+I G+GP RK+ LL+ FG+VK I +S L G Sbjct: 517 EVHRFAITFLRQQHEKHAIQSVLDQIEGVGPKRKQQLLKHFGSVKKIREASELALQEA-G 575 Query: 595 ISKKIACKIYNHFHKNT 611 + +A IY +F + + Sbjct: 576 MPANLASHIYAYFQQES 592 >gi|289422277|ref|ZP_06424131.1| excinuclease ABC, C subunit [Peptostreptococcus anaerobius 653-L] gi|289157328|gb|EFD05939.1| excinuclease ABC, C subunit [Peptostreptococcus anaerobius 653-L] Length = 607 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 194/623 (31%), Positives = 311/623 (49%), Gaps = 40/623 (6%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFT 61 +++P PGVY M D ++YVGKA +L+ R++ Y S+ NH+ ++ M+ I++ + Sbjct: 8 LKKLPASPGVYLMKDRDNNIIYVGKAVSLKNRVRQYFQSSRNHSKKVVSMVKNIDSFEYI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 +T +EVEAL+LE N+IK+ KP++NILL+DDK++PYI +T P + K R + Y Sbjct: 68 ITDSEVEALILECNLIKKYKPKYNILLKDDKTYPYIKVTVNEDFPRVLKVRKILKDKAKY 127 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCA---DSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 FGP+ +V AV ++ ++ + +R+C D R RPCL + IK+C+GPCTG E Sbjct: 128 FGPYTNVSAVNDVLDLIRDIYPIRTCNIDIDRAIRTGMRPCLNYHIKKCTGPCTGYDIKE 187 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y + E FL G L M +A + D+E+A I+RD++ +L+ + Sbjct: 188 DYKRMIDEIIMFLQGKEEKLVTMFEDKMKKAAMDLDFENAAIYRDKINSLNEVAQKQKIS 247 Query: 239 Y----NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 N D ++ + AC+Q F G+ G F L ++ ++IL F++QFY Sbjct: 248 KLQSDNDQDVIAMANFDQEACVQIFFIRNGKISGRERFMLDGIKDNDRSEILGSFVKQFY 307 Query: 295 TDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS-- 351 + P+ +++ EE + ++ + G V I VPK+GEKR ++ NA Sbjct: 308 MSQEYVPKELIVEEEIFDQEIIAQMLSSKRGSNVSIKVPKKGEKRALVLMVRKNADEYLV 367 Query: 352 --HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 K L + + RIE YD S+I G ++G MVV + K Sbjct: 368 KFDDLKKKKYQKSLGALDELKAVLDIESDLHRIEAYDISNIQGVDSIGTMVVYTDGIKDK 427 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 +YR+F + V+ DD A M VL+RR PD+++L Sbjct: 428 KEYRRFKIKT--VEGPDDYASMAEVLDRRLKH-------------------GKLPDLILL 466 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ+SA + VLK +E I + + K + + + + L+ + F Sbjct: 467 DGGKGQVSAVKRVLKDNGLE--IPLWGMYKDDRHRTKG---LINSDKTIELDRTSSLYRF 521 Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 + +++E H ++I+ HR R KK S LD++ GIGP RK L+ F + I +S + Sbjct: 522 VYGIQEEVHGYSISYHRSLRDKKLTKSILDDVPGIGPKRKLALISKFKDIDKIRSASIDE 581 Query: 589 LASIEGISKKIACKIYNHFHKNT 611 + ++GISKKIA I N K Sbjct: 582 IMEVDGISKKIAEDIVNILEKGE 604 >gi|251792698|ref|YP_003007424.1| excinuclease ABC subunit C [Aggregatibacter aphrophilus NJ8700] gi|247534091|gb|ACS97337.1| excinuclease ABC, C subunit [Aggregatibacter aphrophilus NJ8700] Length = 612 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 208/617 (33%), Positives = 340/617 (55%), Gaps = 32/617 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+M D + V+YVGKA +L+KR+ SY ++ + +++ I++I T+T Sbjct: 14 NVPHLPGVYRMYDDSNTVIYVGKAKDLKKRLSSYFRKQLNSKKTEALVASIHHIETTITT 73 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N IK +PR+N+LLRDDKS+PYIL+T K P + +R S IQG YFGP Sbjct: 74 SETEALLLEHNYIKTYQPRYNVLLRDDKSYPYILLT-KETHPRITSYRGSKKIQGEYFGP 132 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183 + + AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RC PC ++ E Y + Sbjct: 133 YPNAGAVRETLSLLQKLFPIRQCENSVYNNRSRPCLQYQIGRCLAPCVKGYVTDEAYAQQ 192 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD 243 V+ A+ FL G + + + + + M QA+ + ++E A RD++ A+ + +R D Sbjct: 193 VNFARLFLQGKDQQVLDHLVKQMEQASQQLNFEEAARIRDQIQAVRAVIEKQFVANDRHD 252 Query: 244 C---FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296 ++ + +AC+Q F G+ G ++F K S + A++ F+ QFY Sbjct: 253 DIDIIAIAYQLGVACVQVLFIRQGKILGNRSYFPKVPSNTNLAELTETFVGQFYLQAHQG 312 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 + P I++ ++ EE + LE Q G KV I +G+K K ++ A +NA + KL Sbjct: 313 RTIPNTIIVDQKLEEKADLETLLSDQAGRKVIIQDHAKGDKSKYLQLAQMNAKAALVTKL 372 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + + I R+E +D SH MG + VV ++G +K+ YR+FN Sbjct: 373 KQSTLQHDRYAALQELLGIDVIK-RMECFDISHTMGEQTIASCVVFSQDGPLKSDYRRFN 431 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + + DD A M L +R+ + ++ ++ PD++ +DGGKGQL Sbjct: 432 I--SGITKGDDYAAMEQALLKRYDKDLEEDK---------------IPDIIFIDGGKGQL 474 Query: 477 SAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQR 532 + A V + L V +NR +I +AKG R AG+E + K + L L L+ IQ Sbjct: 475 NRALQVFENLKVKWNKNRPHLIGVAKGVDRRAGLETLILSKWDKELHLPSDSLALHLIQH 534 Query: 533 LRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+H AI+ HRK+R++ S L+ I G+G R++ LL+ G ++ + ++ + +AS Sbjct: 535 IRDESHNHAISGHRKKRQQHFTQSGLESIEGVGAKRRQALLKYLGGLQGVKNATLDEIAS 594 Query: 592 IEGISKKIACKIYNHFH 608 + GISK +A KI+ Sbjct: 595 VPGISKALAEKIFETLQ 611 >gi|228999295|ref|ZP_04158875.1| UvrABC system protein C [Bacillus mycoides Rock3-17] gi|229006850|ref|ZP_04164483.1| UvrABC system protein C [Bacillus mycoides Rock1-4] gi|228754472|gb|EEM03884.1| UvrABC system protein C [Bacillus mycoides Rock1-4] gi|228760492|gb|EEM09458.1| UvrABC system protein C [Bacillus mycoides Rock3-17] Length = 594 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 174/611 (28%), Positives = 296/611 (48%), Gaps = 43/611 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 12 LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI L+DDK++P+I IT K P L R+ +G YFGP+ Sbjct: 71 NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T L R + LR C + + CL + + +C PC E++ E+ E V Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCTNIP----DKVCLYYHMGQCLAPCVQEVTDEQNQEIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 KFL+GG+ ++ ++ M +A+ K ++E A RD+++ + I I + Sbjct: 186 GIVKFLNGGHKEVRSELEAKMYEASEKLEFERAKELRDQISHIDAIMEKQKMIMSDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ E + + P+ Sbjct: 246 DVFGYVVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYEQNNHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 I++ + + + +V +T PK+G+K+ ++E A NA + Sbjct: 306 IVVPGSIDPELV-------ERFLEVDVTQPKRGKKKDLVELANKNAKIALGEKFYLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ K+ + RIE +DNS+I G + V M+V + K +YRK+ + Sbjct: 359 EERTIKAVENLGKQLDIETP-YRIEAFDNSNIQGTNPVSAMIVFIDGKSAKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++ +K PD++++DGGKG L+A Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------LPLPDLIVIDGGKGHLAA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A VL+ +L + I + + K K E ++L Y +QR++DE Sbjct: 462 ASDVLENELGLY--IPMAGLVKDDKHRTSH-LMIGDPPEPVMLERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K+ S LD I G+G RK++LL+ FG++K + +S G+ Sbjct: 519 HRFAITFHRQLHGKSVIQSALDGIPGVGEKRKKVLLKHFGSLKKMKEASVTEFVEA-GMP 577 Query: 597 KKIACKIYNHF 607 + +A IY++ Sbjct: 578 QNVAETIYSYL 588 >gi|87124468|ref|ZP_01080317.1| excinuclease ABC, C subunit [Synechococcus sp. RS9917] gi|86168040|gb|EAQ69298.1| excinuclease ABC, C subunit [Synechococcus sp. RS9917] Length = 659 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 191/631 (30%), Positives = 301/631 (47%), Gaps = 29/631 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFT 61 +++P PG Y M D R+LYVGK+ +L+ R++SY S + + RI M Q+ I F Sbjct: 10 LKEIPAQPGCYLMRDQDDRILYVGKSKSLRSRVRSYFRSRHDLSPRIRLMTRQVCEIEFI 69 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ--G 119 VT +E EAL LE+N+IK +P FN+LL+DDK +PY+ IT P L+ R Sbjct: 70 VTDSEAEALALESNLIKNHQPHFNVLLKDDKKYPYLCITWSEPYPRLFITRRRRFRSPLD 129 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++GP+ V + +T+ ++R F LR ++ RT CL I RC G C +ISSE+ Sbjct: 130 RFYGPYVDVGLLRRTLFLVKRVFPLRQRPRPLYPDRT--CLNHAIGRCPGVCQEKISSEE 187 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + + G + L+ + M + + D+E+A RD+L L + Sbjct: 188 YHRILRKVAMVFQGRSDELQTLLTEQMERYAERLDFEAAARIRDQLQGLDQLTADQKMSL 247 Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D +L ++ +A +Q G+ G F + IL + + Y+ Sbjct: 248 PDSSVSRDVLALACDQRVAAVQLFQMRAGKLVGRLGFTAD-AAGLEPGLILQRVIEEHYS 306 Query: 296 D---KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 P +L+ + LLE +Q +V+I P++ +K +IE NA Sbjct: 307 QLDAVEIPPELLVQYPLPQRLLLEDWLGEQRERRVQIHCPQRRQKADLIELVQRNAEFEL 366 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + + +D + LP P+RIE YD SHI G AV VV + K Y Sbjct: 367 LRAQRGQEQQALATEDLAQLLELPRPPRRIEGYDISHIQGSDAVASQVVFIDGLPAKQHY 426 Query: 413 RKFNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENLNF--------HPKKQEYSFPS 462 RK+ + + V+ D M V+ RRF + + + Q Sbjct: 427 RKYKIRSSSVRAGHSDDFMSMAEVIRRRFRRWARAKAEGADLGALRHRGGSALQTDGLND 486 Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522 WPDVV++DGGKGQLSA L++L+++ +T+ S+AK + E F + + L Sbjct: 487 WPDVVMIDGGKGQLSAVMEALRELDLDQDLTVCSLAKQRE-----EIFLPGERQPLESEP 541 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMI 581 + ++RLRDEAHRFA++ HR++R + S L +I G+GP R R LL F ++ I Sbjct: 542 DQLGVALLRRLRDEAHRFAVSFHRQQRGERMKRSRLSDIPGLGPKRVRDLLGHFHSIDAI 601 Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNTS 612 + E LA+ GI + +A +I+ FH Sbjct: 602 QLAPIERLAAAPGIGRSLAEQIHAFFHPQDD 632 >gi|145588602|ref|YP_001155199.1| excinuclease ABC, C subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047008|gb|ABP33635.1| Excinuclease ABC subunit C [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 620 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 215/636 (33%), Positives = 324/636 (50%), Gaps = 54/636 (8%) Query: 10 PGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEA 69 PGVY+ D AG +LYVGKA NL+KR+ SY + RI M+ +I TVT TE EA Sbjct: 2 PGVYRFFDEAGNILYVGKARNLKKRVSSYFQRTQLSPRIELMVGKIARYETTVTRTETEA 61 Query: 70 LLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVD 129 L+LE N+IK L P FNIL RDDKS+PY+++T H+ P L +R + YFGPF + Sbjct: 62 LILENNLIKELAPPFNILFRDDKSYPYVMLT-GHQFPRLASYRGKVDKRNHYFGPFPNSW 120 Query: 130 AVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKK 189 AV ++ LQ+ F LR+C DSVF++R+RPCLL QI RCS PC G +S E+Y + V +A + Sbjct: 121 AVRNSVQILQKVFRLRTCEDSVFKNRSRPCLLHQIHRCSAPCVGRLSVEQYSQDVAQATR 180 Query: 190 FLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-----NRMDC 244 FL G + + ++ + M+ + ++E A I RDR+A LS + +D Sbjct: 181 FLEGDHSRVLSELEKEMHVHSEAMEFEMAAILRDRIADLSSVLQQQAMDTVAEGEGDVDV 240 Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLK-----TDSESTNAQILSYFLRQFYTD--- 296 ++ + + C+ G++ G +F K + + +IL F+ Q Y D Sbjct: 241 IAVALMEGMVCVNLAMVRGGRHLGDRAYFPKGLRSSSGELPSPTEILEAFIAQHYLDETA 300 Query: 297 -------KPCPENILLSEEA-----EETSLLEISFFKQYG-------YKVKITVPKQGEK 337 P I+++ E T+L E + K+ QG++ Sbjct: 301 GEEVSVTNLIPPVIVMNHALQAAGDEITTLSESPPEDLHDLLNAQAGRKITFLHQPQGQR 360 Query: 338 RKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALP---HIPKRIEIYDNSHIMGCS 394 R + A NA + T++L + +L RIE +D SH G + Sbjct: 361 RHWLAMAEGNAKIALTKRLVETGGQLARARALVDILSLDLEGLEHLRIECFDISHTSGEA 420 Query: 395 AVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPK 454 VV +N ++YR+FN++ + DD A MR VL+RR++ + Sbjct: 421 TQASCVVYAKNAMQSSEYRRFNIND--ITPGDDYAAMRQVLQRRYANFQE---------- 468 Query: 455 KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK 514 P V+++DGGKGQ+ A+ VL + ++ + I+ +AKG R G+E Sbjct: 469 ---LPPEKMPQVILVDGGKGQVEMARQVLTEFGMDVSL-IVGVAKGEGRKVGLETLIFAD 524 Query: 515 G-EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLL 572 G E L L + L + ++RDEAHRFAIT R +R KA S L+EI GIG R++ LL Sbjct: 525 GREPLELGIDSAALLLVAQIRDEAHRFAITGMRAKRAKARTVSRLEEIEGIGAKRRQKLL 584 Query: 573 QSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 FG +K ++ +S E +AS+EG+S +A +IY H Sbjct: 585 ARFGGLKGVANASIEEIASVEGVSLTLAEQIYRQLH 620 >gi|296393040|ref|YP_003657924.1| excinuclease ABC subunit C [Segniliparus rotundus DSM 44985] gi|296180187|gb|ADG97093.1| excinuclease ABC, C subunit [Segniliparus rotundus DSM 44985] Length = 650 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 187/651 (28%), Positives = 307/651 (47%), Gaps = 71/651 (10%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTC 64 +P PGVY+ D +G+V+YVGKA NL+ R+ +Y R M++ + + +TV Sbjct: 10 IPTEPGVYRFRDPSGQVIYVGKAKNLRARLSNYFQDLYALAPRTRLMVTTASAVEWTVVA 69 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TEVEAL LE + IK PRFN+ RDDKS+P + ++ + P L+ +R + YFGP Sbjct: 70 TEVEALQLEFSWIKEFDPRFNVRYRDDKSYPMLAVSLNEEYPRLFVYRGARRKGVRYFGP 129 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKYM 181 ++ V A+ T++ L + F R+C++ VF+ RPCLL I +CS PC G +S+ ++ Sbjct: 130 YSHVWAIRNTVDLLTKVFPARTCSNGVFKRHGQIGRPCLLGYIDKCSAPCVGAVSAAEHR 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 V +FL+GG NL + + M A D+E+A RD LAAL H + Sbjct: 190 RIVQSFCEFLAGGADNLVRETRKRMLAAAEALDFEAAARLRDELAALDKALEHQTVVLAD 249 Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTD----------------SESTN 282 + D + +++ +Q G+ RG + + ++ Sbjct: 250 GSDADVVAFDYDELEVAVQVFQVREGRVRGQRGWVVDNAYSPGPHGDRTRDGRGWEAASR 309 Query: 283 AQILSYFLRQFYTD-----------------KPCPENILLSEEAEETSLLEISFFKQYGY 325 +++ FL QFY D P+ +L+ E ++ G Sbjct: 310 REMVEEFLLQFYGDLAELESVADRFGQSDRMSAVPKEVLVPELPDDVEGFATWLSTLRGT 369 Query: 326 KVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ----MILKDFTKKFALPHIPKR 381 V + VP++G+KRK++E NAH + Q L++ + F LP P R Sbjct: 370 PVALRVPRRGDKRKLMETVARNAHETLAQHKLRRSGDFTERSAALQEIYEAFDLPAPPIR 429 Query: 382 IEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP----NDVKTQDDCAMMRMVLER 437 IE D SH+ G V +VV + K YR + + + DD + V+ R Sbjct: 430 IECVDVSHVQGTDVVASLVVFDDGLPKKADYRHYTIKGAMGADGAPQNDDTRSVAEVIAR 489 Query: 438 RFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISI 497 RF++ P ++++DGG+ Q+ AA L +L + I ++ + Sbjct: 490 RFAK----------------RGDRPDPGLLVIDGGQPQVRAAHKALVELGAAD-IPVVGL 532 Query: 498 AKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSP 556 AK + E + + ++L R P L+ +QR+RDEAHRFAI HRK+R K S Sbjct: 533 AKRLE-----ELWLPDDDDPVILPRRSPGLFLLQRVRDEAHRFAIAHHRKKRSKRMTVSA 587 Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 LDE+ G+G R+ L++ FG+V+ ++ +S + +A++ G +A + Sbjct: 588 LDEVKGLGERRRAQLVKHFGSVRKLADASADEIAALPGFGPVLAESVVTAL 638 >gi|228910343|ref|ZP_04074159.1| UvrABC system protein C [Bacillus thuringiensis IBL 200] gi|228849295|gb|EEM94133.1| UvrABC system protein C [Bacillus thuringiensis IBL 200] Length = 594 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 177/611 (28%), Positives = 294/611 (48%), Gaps = 43/611 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 12 LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI L+DDK++P+I IT K P L R+ +G YFGP+ Sbjct: 71 NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGRYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T L R + LR C + + CL + + +C PC E++ E+ E V Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCTNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E KFL+GG+ ++ ++ M +A+ K ++E A RD++A + I I + Sbjct: 186 EIIKFLNGGHKEIRSELEIKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ E + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 I++ + + + +V+ T PK+G+K+ ++E A NA + Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E + K+ + RIE +DNS+I G + V M+ + K +YRK+ + Sbjct: 359 EERTIKAVDHLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++ +K PD++I+DGGKG L+A Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------LPLPDLIIIDGGKGHLAA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A +L+ +L + I + + K K E ++L Y +QR++DE Sbjct: 462 ASDILENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K+ S LD+I GIG RK++LL+ FG++K + +S G+ Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASVAEFVEA-GMP 577 Query: 597 KKIACKIYNHF 607 K +A IY + Sbjct: 578 KNVAETIYTYL 588 >gi|148643755|ref|YP_001274268.1| excinuclease ABC subunit C [Methanobrevibacter smithii ATCC 35061] gi|148552772|gb|ABQ87900.1| excinuclease ABC, subunit C, UvrC [Methanobrevibacter smithii ATCC 35061] Length = 583 Score = 483 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 198/612 (32%), Positives = 320/612 (52%), Gaps = 42/612 (6%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 E +P+ PGVY M D ++Y+GKA NL R++SY + ++S +++ + V Sbjct: 8 PENLPKKPGVYIMRDANDEIIYIGKAKNLINRVRSYFREKLDRPKTQILMSHFDSLEYIV 67 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LEA +IK+ +PR+N+ L+DDK +PY+ IT+ K P L R+ + Y+ Sbjct: 68 TNSEKEALILEATLIKKHRPRYNVQLKDDKRYPYVKITN-EKYPRLIITRNITKNG-IYY 125 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF V +V+KT+ L+ F +R+ R+ PCL QI C PC+GEIS E+Y E Sbjct: 126 GPFTDVTSVKKTVKFLKSLFKIRT-----CRNMDGPCLNSQIDLCYAPCSGEISKEEYDE 180 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN----DSI 238 +++ F G + + + + M +A E +E A + RD++ ++ I Sbjct: 181 IINKIDLFFQGKYSVIVKNLKKEMAEAAENEQFEKAAVLRDQITSIEEIMEKQFVDLVDD 240 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DK 297 D ++ N N + G+ G F + +N++IL F++Q+Y ++ Sbjct: 241 DLDQDVIAIAPNDNEVVVIIMPIRNGKIVGRDDFLMSGSQYESNSEILFAFIQQYYGFNR 300 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P+ ILL+E ++T LLE G KV I VP +G K +++ A NA Sbjct: 301 HIPKQILLNEPIDDTELLEEWLSDLRGNKVYIKVPMKGVKLRLVNMAQKNAEI----IKH 356 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + + + L + K L +P+ IE YD S+I G AVG V + K +Y++F + Sbjct: 357 QKKAMENSLIELKKYLKLDKLPRIIEGYDISNISGKFAVGSKVSFKDAKPNKKKYKRFKI 416 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 +D AMM+ +L RR + +EE PD++++DGGKGQL Sbjct: 417 ET---PGPNDFAMMKELLTRRLKMIDTDEE----------------PDLIVIDGGKGQLG 457 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A VL +LN+ I II +AK + E + +++ + L+ +Q++RDE+ Sbjct: 458 TACEVLDELNLA-HIPIIGLAKEFE-----EIYIPNSKRPIIIPKNNKALHLLQQVRDES 511 Query: 538 HRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HRK R + S LD+I GIG RK +L+ FGT+ + +S E LA I+G++ Sbjct: 512 HRFAITYHRKLRSDNISESSLDDIPGIGKKRKINILKEFGTMDKVKNASVEELAKIKGMN 571 Query: 597 KKIACKIYNHFH 608 +K+A +Y ++H Sbjct: 572 EKVATNVYEYYH 583 >gi|222444815|ref|ZP_03607330.1| hypothetical protein METSMIALI_00428 [Methanobrevibacter smithii DSM 2375] gi|222434380|gb|EEE41545.1| hypothetical protein METSMIALI_00428 [Methanobrevibacter smithii DSM 2375] Length = 583 Score = 483 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 198/612 (32%), Positives = 320/612 (52%), Gaps = 42/612 (6%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 E +P+ PGVY M D ++Y+GKA NL R++SY + ++S +++ + V Sbjct: 8 PENLPKKPGVYIMRDANDEIIYIGKAKNLINRVRSYFREKLDRPKTQILMSHFDSLEYIV 67 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LEA +IK+ +PR+N+ L+DDK +PY+ IT+ K P L R+ + Y+ Sbjct: 68 TNSEKEALILEATLIKKHRPRYNVQLKDDKRYPYVKITN-EKYPRLIITRNITKNG-IYY 125 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF V +V+KT+ L+ F +R+ R+ PCL QI C PC+GEIS E+Y E Sbjct: 126 GPFTDVTSVKKTVKFLKSLFKIRT-----CRNMDGPCLNSQIDLCYAPCSGEISKEEYDE 180 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN----DSI 238 +++ F G + + + + M +A E +E A + RD++ ++ I Sbjct: 181 IINKIDLFFQGKYSVIVKNLKKEMAEAAENEQFEKAAVLRDQITSIEEIMEKQFVDLVDD 240 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DK 297 D ++ N N + G+ G F + +N++IL F++Q+Y ++ Sbjct: 241 DLDQDVIAIAPNDNEVVVIIMPIRNGKIVGRDDFLMSGSQYESNSEILFAFIQQYYGFNR 300 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P+ ILL+E ++T LLE G KV I VP +G K +++ A NA Sbjct: 301 HIPKQILLNEPIDDTELLEEWLSDLRGNKVYIKVPMKGVKLRLVNMAQKNAEI----IKH 356 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + + + L + K L +P+ IE YD S+I G AVG V + K +Y++F + Sbjct: 357 QKKAMENSLIELKKYLKLDKLPRIIEGYDISNISGKFAVGSKVSFKDAKPNKKKYKRFKI 416 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 +D AMM+ +L RR + +EE PD++++DGGKGQL Sbjct: 417 ET---PGPNDFAMMKELLTRRLKMVDTDEE----------------PDLIVIDGGKGQLG 457 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A VL +LN+ I II +AK + E + +++ + L+ +Q++RDE+ Sbjct: 458 MACEVLDELNLA-HIPIIGLAKEFE-----EIYIPNSKRPIIIPKNNKALHLLQQVRDES 511 Query: 538 HRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HRK R + S LD+I GIG RK +L+ FGT+ + +S E LA I+G++ Sbjct: 512 HRFAITYHRKLRSDNISESSLDDIPGIGKKRKINILKEFGTMDKVKNASVEELAKIKGMN 571 Query: 597 KKIACKIYNHFH 608 +K+A +Y ++H Sbjct: 572 EKVATNVYEYYH 583 >gi|229118005|ref|ZP_04247365.1| UvrABC system protein C [Bacillus cereus Rock1-3] gi|228665454|gb|EEL20936.1| UvrABC system protein C [Bacillus cereus Rock1-3] Length = 594 Score = 483 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 176/611 (28%), Positives = 293/611 (47%), Gaps = 43/611 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 12 LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI L+DDK++P+I IT K P L R+ +G YFGP+ Sbjct: 71 NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T L R + LR C++ + CL + + +C PC E++ E+ E V Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E KFL+GG+ ++ ++ M +A+ K ++E A RD++A + I I + Sbjct: 186 EIIKFLNGGHKEIRSELEIKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ E + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 I++ + + + +V+ T PK+G+K+ ++E A NA + Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E + K+ + RIE +DNS+I G + V M+ + K +YRK+ + Sbjct: 359 EERTIKAVDQLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++ +K D++I+DGGKG L+A Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------LPLTDLIIIDGGKGHLAA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 VL+ +L + I + + K K E ++L Y +QR++DE Sbjct: 462 VSDVLENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVILERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K+ S LD+I GIG RK++LL+ FG++K + +S G+ Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASVAEFVEA-GMP 577 Query: 597 KKIACKIYNHF 607 K +A IY + Sbjct: 578 KNVAETIYTYL 588 >gi|261350613|ref|ZP_05976030.1| excinuclease ABC subunit C [Methanobrevibacter smithii DSM 2374] gi|288861396|gb|EFC93694.1| excinuclease ABC subunit C [Methanobrevibacter smithii DSM 2374] Length = 583 Score = 483 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 198/612 (32%), Positives = 320/612 (52%), Gaps = 42/612 (6%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 E +P+ PGVY M D ++Y+GKA NL R++SY + ++S +++ + V Sbjct: 8 PENLPKKPGVYIMRDANDEIIYIGKAKNLINRVRSYFREKLDRPKTQILMSHFDSLEYIV 67 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LEA +IK+ +PR+N+ L+DDK +PY+ IT+ K P L R+ + Y+ Sbjct: 68 TNSEKEALILEATLIKKHRPRYNVQLKDDKRYPYVKITN-EKYPRLIITRNITKNG-IYY 125 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF V +V+KT+ L+ F +R+ R+ PCL QI C PC+GEIS E+Y E Sbjct: 126 GPFTDVTSVKKTVKFLKSLFKIRT-----CRNMDGPCLNSQIDLCYAPCSGEISKEEYDE 180 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN----DSI 238 +++ F G + + + + M +A E +E A + RD++ ++ I Sbjct: 181 IINKIDLFFQGKYSVIVKNLKKEMAEAAENEQFEKAAVLRDQITSIEEIMEKQFVDLVDD 240 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DK 297 D ++ N N + G+ G F + +N++IL F++Q+Y ++ Sbjct: 241 DLDQDVIAIAPNDNEVVVIIMPIRNGKIVGRDDFLMSGSQYESNSEILFAFIQQYYGFNR 300 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P+ ILL+E ++T LLE G KV I VP +G K +++ A NA Sbjct: 301 HIPKQILLNEPIDDTELLEEWLSDLRGNKVYIKVPMKGVKLRLVNMAQKNAEI----IKH 356 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + + + L + K L +P+ IE YD S+I G AVG V + K +Y++F + Sbjct: 357 QKKAMENSLIELKKYLKLDKLPRIIEGYDISNISGKFAVGSKVSFKDAKPNKKKYKRFKI 416 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 +D AMM+ +L RR + +EE PD++++DGGKGQL Sbjct: 417 ET---PGPNDFAMMKELLTRRLKMIDTDEE----------------PDLIVIDGGKGQLG 457 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A VL +LN+ I II +AK + E + +++ + L+ +Q++RDE+ Sbjct: 458 MACEVLDELNLA-HIPIIGLAKEFE-----EIYIPNSKRPIIIPKNNKALHLLQQVRDES 511 Query: 538 HRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HRK R + S LD+I GIG RK +L+ FGT+ + +S E LA I+G++ Sbjct: 512 HRFAITYHRKLRSDNISESSLDDIPGIGKKRKINILKEFGTMDKVKNASVEELAKIKGMN 571 Query: 597 KKIACKIYNHFH 608 +K+A +Y ++H Sbjct: 572 EKVATNVYEYYH 583 >gi|268316813|ref|YP_003290532.1| excinuclease ABC, C subunit [Rhodothermus marinus DSM 4252] gi|262334347|gb|ACY48144.1| excinuclease ABC, C subunit [Rhodothermus marinus DSM 4252] Length = 615 Score = 483 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 187/627 (29%), Positives = 301/627 (48%), Gaps = 39/627 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVT 63 +P PGVY D AG+VLYVGKA NL++R++SY + R+ ++ +I ++ VT Sbjct: 11 HLPTRPGVYIHRDAAGQVLYVGKAKNLRQRVRSYFQESRPRDGRLEALVRKIADVEVIVT 70 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EAL+LE N+IK+LKPR+NI LRDDK++PYI I + + P ++ R YFG Sbjct: 71 DTEAEALILENNLIKQLKPRYNINLRDDKTYPYICIAN-ERFPRVFPTRRVRKDGSKYFG 129 Query: 124 PFASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 P+ V + + + ++ RT L +++ + +PCL + IK+C+ PC G S E Sbjct: 130 PYTDVGQMHRLLRLIRSLFKLRTCNLNLSPEAIAAGKYQPCLEYHIKKCAAPCIGLQSEE 189 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y + + ++ L+G L ++ M D+E A RD++ L + Sbjct: 190 DYNATIRQIEQLLNGKTQTLIAQLREEMKARAAALDFERAAELRDQIRLLEQHAERQKIV 249 Query: 239 YNRM-----DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 ++ +AC G+ G +L+ + +L F+ + Sbjct: 250 SQDFADRDVFALAVDRTDGVACGVVFQVREGKVIGRRHRYLRRIEGQRDGALLQAFVEDY 309 Query: 294 YTDK-PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 Y + P+ +LLS E EE LE ++ G KV + VP++G+K ++ A NA Sbjct: 310 YAEAVFFPDEVLLSHELEEPDALEALLRERRGKKVPLRVPQRGDKAGLVHLAEANARLLL 369 Query: 353 TQK-----LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 + E ++ + LP +P+RIE +D SH+ G V VV + Sbjct: 370 EEWRLAQKKRGETRIPEAVRALQEALRLPGLPRRIECFDISHLGGTGTVASCVVFEDGRP 429 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 K YR F + DD MR + RR+ +L WPD+V Sbjct: 430 SKRDYRTFKIRSVTPGKPDDYQAMREAVTRRYRRLRDEG--------------GPWPDLV 475 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPIL 527 ++DGGKGQLS+A L+ L + + +I +AK + E + + L P L Sbjct: 476 VIDGGKGQLSSALEALEALELRGQFPVIGLAKRLE-----EIYRPGDPDPYQLPKTSPAL 530 Query: 528 YFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 +QR+R+EAHRFA+T R++R++ S L +I GIGP LLQ FG+ + + + E Sbjct: 531 QLLQRIRNEAHRFAVTMQRRQRRRVLRSELLDIPGIGPRTVEKLLQHFGSARRVREADLE 590 Query: 588 TLASIEGISKKIACKIYNHFHKNTSHT 614 LA++ G + A +I HF ++ + Sbjct: 591 ALAAVVG--RARAERIRQHFDAASTSS 615 >gi|118595104|ref|ZP_01552451.1| excinuclease ABC, C subunit [Methylophilales bacterium HTCC2181] gi|118440882|gb|EAV47509.1| excinuclease ABC, C subunit [Methylophilales bacterium HTCC2181] Length = 580 Score = 483 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 205/599 (34%), Positives = 317/599 (52%), Gaps = 24/599 (4%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 ML+ A ++Y+GKA +L+KR+ SY + + R M+ I +I FTVT TE EAL+LE Sbjct: 1 MLNKAEDIIYIGKAKDLKKRVLSYFNKTQPSPRTRLMVGSIASIEFTVTNTEAEALILEN 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 NMI+ PR+N++ RDDKS+PY+ IT K P + HR I YFGPF + +AV ++ Sbjct: 61 NMIRSFMPRYNVIFRDDKSYPYLAIT-GDKFPRIRFHRGLQKIDTKYFGPFPNSNAVRQS 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194 I LQ+ F LR+C +SVF +R+RPCL QIKRC+ PC G I ++Y V++A FL G Sbjct: 120 IQLLQKVFMLRTCENSVFNNRSRPCLEHQIKRCTAPCVGLIEEDEYGADVNQANLFLDGK 179 Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRMDCFSLYHNK 251 + + + + MN+ + ++E A I RDR+ +L ++ N D + Sbjct: 180 DSEVIGNLTKKMNEQSEAFNFERAAIFRDRIQSLRQVRLKQFVSDFSENDADIIAFAEAS 239 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEE 311 C G++ G TFF K I+ F+ Q+Y P I+ + Sbjct: 240 GKICANVVMIRGGRHLGDKTFFPKNHDGHIEESIIDTFITQYYDLHKPPPVIVTENKVSN 299 Query: 312 TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTK 371 L++ F + KV++ G+K+ + A NA S QK + + S L Sbjct: 300 -ELVKEFFAIKQYGKVRLLSRLTGDKKNWLLMAKKNAQISLEQKNNEQASQVERLLALRA 358 Query: 372 KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMM 431 LP RIE YD SH MG S VG VV + YRK+N+ ++ DD M Sbjct: 359 LLGLPDHVNRIECYDISHTMGESTVGSCVVYDKYEMQNKDYRKYNIK--NITPGDDYGAM 416 Query: 432 RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENR 491 + VLERRF ++ + + PD+V++DGGKGQ A+ +++ + + Sbjct: 417 KQVLERRFKRMAEED--------------AIKPDLVLIDGGKGQFGVAKKIMEDNGITD- 461 Query: 492 ITIISIAKGPKRSAGMEKFFVKKGEAL-VLNMRDPILYFIQRLRDEAHRFAITTHRKRRK 550 I ++ ++KG R AG EK + + + L +N D + IQ +RDE+HRFAIT HR +R Sbjct: 462 IYLVGVSKGADRKAGKEKLIIGEDKVLDTVNPEDLGFHLIQHIRDESHRFAITGHRAKRA 521 Query: 551 KA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 K S ++E+ G+G +++ LL FG ++ + + E L +EGI+ ++A KI+++FH Sbjct: 522 KNRMSSSIEEVEGVGAKKRKSLLVYFGGLEGVKNAPVEELMLVEGINARLAEKIFSYFH 580 >gi|161511200|ref|NP_834229.2| excinuclease ABC subunit C [Bacillus cereus ATCC 14579] gi|119370540|sp|Q817L9|UVRC_BACCR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C Length = 594 Score = 483 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 178/610 (29%), Positives = 294/610 (48%), Gaps = 43/610 (7%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 P+ PG Y M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 13 PDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSSN 71 Query: 67 VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126 +EAL+LE N+IK+ P++NI L+DDK++P+I IT K P L R+ +G YFGP+ Sbjct: 72 LEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPYP 130 Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186 + + +T L R + LR C + + CL + + +C PC E++ E+ E V E Sbjct: 131 NAQSAHETKKLLDRMYPLRKCTNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVDE 186 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMD 243 KFL+GG+ ++ ++ M +A+ K ++E A RD++A + I I + D Sbjct: 187 IIKFLNGGHKEVRSELEIKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDRD 246 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303 F +K C+Q F G+ E + + P+ I Sbjct: 247 VFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKEI 306 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLSTE 359 ++ + + + +V+ T PK+G+K+ ++E A NA + E Sbjct: 307 VVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERDE 359 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + K+ + RIE +DNS+I G + V M+ + K +YRK+ + Sbjct: 360 ERTIKAVDHLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIKT 418 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 V+ DD MR V+ RR+++ +K PD++I+DGGKG L+AA Sbjct: 419 --VQGPDDYESMREVVRRRYTRALKEN--------------SPLPDLIIIDGGKGHLAAA 462 Query: 480 QGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 +L+ +L + I + + K K E ++L Y +QR++DE H Sbjct: 463 SDILENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEVH 519 Query: 539 RFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ K+ S LD+I GIG RK++LL+ FG++K + +S E G+ K Sbjct: 520 RFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASIEEFVEA-GMPK 578 Query: 598 KIACKIYNHF 607 +A IY + Sbjct: 579 NVAETIYTYL 588 >gi|189423649|ref|YP_001950826.1| excinuclease ABC subunit C [Geobacter lovleyi SZ] gi|238692105|sp|B3E394|UVRC_GEOLS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|189419908|gb|ACD94306.1| excinuclease ABC, C subunit [Geobacter lovleyi SZ] Length = 604 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 195/614 (31%), Positives = 304/614 (49%), Gaps = 31/614 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 P PGVY M D G +LYVGKA NL++R+ +Y + + ++ +++++ +I FT+T Sbjct: 9 SFPTAPGVYLMRDATGTILYVGKARNLRQRVSNYFGATDGRPQVRFLMARVTSIEFTITD 68 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLE +IK+ +PR+N+ L+DDK+F + I + P R S YFGP Sbjct: 69 TEKEALLLENTLIKQHQPRYNLNLKDDKTFFSLRIDLTERFPRFTVVRKVSRDGARYFGP 128 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 +AS A + + LQR F LR +R+RPCL QI +CS PC I++E+Y V Sbjct: 129 YASASAAREVLRQLQRMFPLRHYPLKTCLNRSRPCLYHQIGQCSAPCHNLITAEEYNLLV 188 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRD--RLAALSHIQNHNDSIYNRM 242 A FL G N +L + M +A YE A RD + + S Sbjct: 189 EGAVLFLEGKNKDLVSGFRQRMKEAAEGLHYEEAARWRDLLKAIDTTLEHQKMVSQGGDS 248 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-KPCPE 301 D L N++ I F G + + L + L+ F++ +Y + + P+ Sbjct: 249 DILGLAGNEDSLAIAVLFVRGGSL--SGSTVLHGSGGLDTSDTLATFIQYYYGNERFIPD 306 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 +LL + LE + G KV++ PK+G+K ++ A NA + +K +T Sbjct: 307 ELLLPLSLDAGQSLEEWLSELKGKKVRLQQPKRGDKLNLVNLATRNAQAALAEKSATRQG 366 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 + L + +K ALP +P+RIE YD S + G +VG V + K +YR + Sbjct: 367 IERTLAELQQKLALPRLPRRIECYDISTLQGRHSVGSGVAFLDGLPDKERYR--RYRIRE 424 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 + QDD M++ V RRFS + PD+V++DGG GQL++ Sbjct: 425 SQGQDDFGMLQEVFARRFS--------------PERIEQWGLPDLVVVDGGIGQLNSTLS 470 Query: 482 VLKKLNVENRITIISIA----KGPKRSAGMEK-----FFVKKGEALVLNMRDPILYFIQR 532 VL +L + R ++S+A KG + +E+ F + + L L + Sbjct: 471 VLAELGLSERPAVVSLAKSRVKGDGKDIHVERTEERVFLPGRRNPVRLRQDSAPLKLLAA 530 Query: 533 LRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDEAHRFAI HR+ R + S L EI G+GP +RLLL FG+++ I ++ E LA+ Sbjct: 531 IRDEAHRFAIGYHRRLRDRETLRSALREIPGVGPKLERLLLTRFGSLEGIQNATVEELAT 590 Query: 592 IEGISKKIACKIYN 605 + G+S+++A I Sbjct: 591 VAGVSQELARLIKA 604 >gi|310829183|ref|YP_003961540.1| excinuclease ABC subunit C [Eubacterium limosum KIST612] gi|308740917|gb|ADO38577.1| excinuclease ABC subunit C [Eubacterium limosum KIST612] Length = 632 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 195/627 (31%), Positives = 320/627 (51%), Gaps = 23/627 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 + +P+ PGVY M + AG ++YVGKA NL+ R++ Y S N T + ++S I +I Sbjct: 6 KLKDIPQNPGVYLMKNAAGDIIYVGKAINLRNRLRQYFQNSKNLTPKTVTLVSHICDIET 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V +E+EAL+LE N+IK +P++NILL+DDKS+PY+ +T + + P + R+ G Sbjct: 66 IVVDSELEALILECNLIKEHRPKYNILLKDDKSYPYVKVTLEDEYPKVIMTREHKKDGGK 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS--VFRHRTRPCLLFQIKRCSGPCTGEISSE 178 YFGPF S AV+KTI ++ + + LR C RPCL + I +C PC G + E Sbjct: 126 YFGPFTSSFAVKKTIEAIGKLYPLRRCNRKVAFGEKNGRPCLNYYIGQCCAPCQGNVPKE 185 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +YM ++ + L+G + L + M++A K DYE A RD++ + HI I Sbjct: 186 EYMAYISDILSILNGKDKELVLTLEEKMSEAAQKMDYELAAKLRDQIYGIQHIVEKQKII 245 Query: 239 YNR---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D + +++LAC+Q G+ G FL+ EST I++ F++Q+Y+ Sbjct: 246 VSNQQDQDIIAFAKDEDLACVQVFNVRDGKMLGRDHTFLEGVEESTPEDIMTTFVKQYYS 305 Query: 296 DKPCPENILLSEEA---EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA---- 348 KP ++ +E + + G KV +T P++G+K K+ NA Sbjct: 306 SKPFIPREIILGAPLLKDEEDTIAQWLAELRGAKVVLTRPQKGQKSKMTRMVEENAELTL 365 Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 + +K E + L F + H P++IE YD S+I G VG MVV Sbjct: 366 KQYELEKRQKEEKKKSRLDAFKDLLRMDHTPEKIEAYDISNISGTDNVGGMVVFQGGKPD 425 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 K YR+F + V Q+D A M+ ++ RR + IK + N ++ SF +PDV Sbjct: 426 KKAYRRFKIKS--VDGQNDYASMQEMIFRRIERGIKEQ---NEGKDPEKSSFLPFPDVFC 480 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 +DGGK + A + +L+ I + + K + K E L P+ Sbjct: 481 IDGGKTHVDAVRSILQMYP-NVHIEVCGMVKDDHHRIRG---IIYKDEEYPLKKSTPLCT 536 Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 F+ + +E HR+A+ H+ RKK S L+EI GIG R+ LL++ +G++ + +++ E Sbjct: 537 FLSDISEEVHRYALGYHQTLRKKGMLESRLEEIPGIGKKRRELLMRHYGSLNNLKKTTLE 596 Query: 588 TLASIEGISKKIACKIYNHFHKNTSHT 614 L ++ G+S K A ++++F+ + T Sbjct: 597 ELKTLPGMSDKTAQAVFDYFNDDEHKT 623 >gi|299535528|ref|ZP_07048849.1| excinuclease ABC subunit C [Lysinibacillus fusiformis ZC1] gi|298728728|gb|EFI69282.1| excinuclease ABC subunit C [Lysinibacillus fusiformis ZC1] Length = 596 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 176/617 (28%), Positives = 289/617 (46%), Gaps = 39/617 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+ PG Y M D G ++YVGKA L+ R++SY H + ++ +I + + Sbjct: 8 KLDILPDQPGCYLMKDRQGTIIYVGKAKVLKNRVRSYFTGT-HEGKTQRLVGEIEDFEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EAL+LE N+IK P++N++L DDK++PY+ IT+ K P L R + Y Sbjct: 67 VTSSNIEALILELNLIKLHDPKYNVMLTDDKTYPYLKITN-EKHPRLITTRKVKKDKAKY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + A +T L R + LR + ++ CL + + +C PC EI + Y Sbjct: 126 FGPYPNAYAASETKKLLDRLYPLRK----CVQLPSKACLYYHMGQCLAPCVKEIDGQVYQ 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---I 238 E + + KFL+GG +K+++ M A ++E A RD++A + + Sbjct: 182 EMIEDMTKFLNGGVETVKKELEVKMLAAAENLEFERAKEFRDQIAHIDTVMQKQKIVSSD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F K C+Q F G+ ++ + + Sbjct: 242 TTNRDVFGYAVEKGWMCVQVFFVRQGKLIERDVSIFPIYQDAEEEFLTFVGRFYEKPEHI 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P+ I + + + L E+ K PK+G+K++++E A NA + K Sbjct: 302 KPKEIFIPQAIDAAILTELLEIKVLT-------PKRGQKKELVELATKNAEIAVAAKFQL 354 Query: 359 EISHQMIL---KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 + + + P RIE +DNSH+ G AV MVV + K +YRK+ Sbjct: 355 IERQEERTIGACEALGEAMGISAPLRIEAFDNSHMHGTDAVSAMVVFIDGKPAKKEYRKY 414 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 DD M+ V+ RR+ +++K PD+V++DGGKGQ Sbjct: 415 KTRTA--AKHDDYGAMQEVIRRRYIRVLKEG--------------LPLPDLVLIDGGKGQ 458 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 + A+ VL+ + I I +AK K + F E + L Y +QR++D Sbjct: 459 MEVAREVLED-ELGLVIPIAGLAKDDKHNTSQ-LLFGDPPEVISLKRTSDGFYLLQRIQD 516 Query: 536 EAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E HRFAIT R++ +K A S LD+I G+GP RK+ LL+ FG+VK I +S L G Sbjct: 517 EVHRFAITFLRQQHEKHAIQSVLDQIEGVGPKRKQQLLKHFGSVKKIREASELALQEA-G 575 Query: 595 ISKKIACKIYNHFHKNT 611 + +A +I+++F + + Sbjct: 576 MPANLASQIFSYFQQQS 592 >gi|229062202|ref|ZP_04199525.1| UvrABC system protein C [Bacillus cereus AH603] gi|228717096|gb|EEL68774.1| UvrABC system protein C [Bacillus cereus AH603] Length = 594 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 177/611 (28%), Positives = 294/611 (48%), Gaps = 43/611 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 12 LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI L+DDK++P+I IT K P L R+ +G YFGP+ Sbjct: 71 NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T L R + LR C++ + CL + + +C PC E++ E+ E V Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTDEQNKEIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E KFL+GG+ ++ ++ M +A+ K ++E A RD++A + I I + Sbjct: 186 EIIKFLNGGHKEIRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ E + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 I++ + + + +V+ T PK+G+K+ ++E A NA + Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFHLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E + + K+ + RIE +DNS+I G + V M+ + K +YRK+ + Sbjct: 359 EERTIKAVDNLGKQLGIETP-YRIEAFDNSNIQGINPVSAMIAFIDGKPAKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++ +K PD++I+DGGKG L+A Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------LPLPDLIIIDGGKGHLAA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 VL+ +L + I + + K K E + L Y +QR++DE Sbjct: 462 TSDVLENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVRLERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K+ S LD+I GIG RK++LL+ FG++K + +S G+ Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASIAEFVEA-GMP 577 Query: 597 KKIACKIYNHF 607 K +A IY + Sbjct: 578 KNVAEMIYTYL 588 >gi|313905376|ref|ZP_07838742.1| excinuclease ABC, C subunit [Eubacterium cellulosolvens 6] gi|313469846|gb|EFR65182.1| excinuclease ABC, C subunit [Eubacterium cellulosolvens 6] Length = 619 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 188/630 (29%), Positives = 307/630 (48%), Gaps = 34/630 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 +++P+ PGVY M + V+YVGKA L+ R++ Y +S N +I M+ Q+ + Sbjct: 8 ELKKLPQKPGVYIMHGLKDEVMYVGKAVRLRNRVRQYFSNSKNKRLKIYSMVPQVTRFEY 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +EVEAL+LE N+IK +P++N +L DDKS+P+I +T + P + + Sbjct: 68 IVTDSEVEALVLECNLIKEYRPKYNTMLMDDKSYPFIQVTTQEAFPRVNYQHRMKKDKAQ 127 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ A ++TI +++ + LRSC + + RPCL + I +C PC G IS E Sbjct: 128 YFGPYPDATAAKETIELVRKLYHLRSCTRRLPEDIGKDRPCLYYHIHQCKAPCQGWISQE 187 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + EA +FL+G + + M +A+ + +E A RD + ++ + Sbjct: 188 EYRSQIDEAIRFLNGKTEKVLRDLEEKMLEASEELKFEEAAAFRDLIRSVKKVSERQKMA 247 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 N D +L + A +Q F G+ G F+LK + + ++ F++QFY+ Sbjct: 248 NGSGNDQDILALAEDGGDAIVQVFFVRDGRLIGRDHFYLKVGDDEDRSSVMQSFIQQFYS 307 Query: 296 DKP-CPENILLSEEAEETSLLEISFFK---QYGYKVKITVPKQGEKRKIIEQALINAH-- 349 P P ++LS+ +T +LE + KV I VP++G K K++E A NA Sbjct: 308 GTPFIPHELMLSDPIRDTDVLEAWLTEKKNDKNSKVHIRVPQRGSKEKLVELARRNASII 367 Query: 350 --RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 + + + + + + RIE YD S+I G +VG MVV Sbjct: 368 LTQDRERIKKDVAKTVGAIGEIGEWLGMEAPG-RIESYDISNISGYQSVGSMVVYEGGRP 426 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 K YRKF + V+ +D A M VL RRF + +K + F PD++ Sbjct: 427 KKADYRKFRIKT--VEGPNDYASMEEVLTRRFKRGLKAD-----------AGFEKLPDLL 473 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPIL 527 ++DGG+GQ++ A VL KL + + + + K + + + Sbjct: 474 LMDGGRGQVNIALEVLDKLGIH--VPVAGMVKDDRHRTRG---LYYNNVEIPIPTDSEGF 528 Query: 528 YFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586 + I R++DE HRFAIT HR R K S LD+I IG RK L+++F + I + Sbjct: 529 HLITRIQDETHRFAITYHRLLRSKEQVRSVLDDIPNIGERRKMDLIRTFPDLASIRNADV 588 Query: 587 ETLASIEGISKKIACKIYNHFHKNTSHTPT 616 ETLA + ++++ A +Y+ FH + T Sbjct: 589 ETLAKVPSMNERAARSVYDFFHAEGKESDT 618 >gi|78189306|ref|YP_379644.1| excinuclease ABC subunit C [Chlorobium chlorochromatii CaD3] gi|90111062|sp|Q3AQX4|UVRC_CHLCH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|78171505|gb|ABB28601.1| Excinuclease ABC subunit C [Chlorobium chlorochromatii CaD3] Length = 629 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 180/632 (28%), Positives = 301/632 (47%), Gaps = 52/632 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRFTVT 63 +P PG+YQ + AGR++YVGKA NL+ R++SY +++ + ++S I+++ +T Sbjct: 23 TLPTSPGIYQFKNSAGRIIYVGKAKNLRNRVRSYFRNSHQLFGKTLVLVSHIDDLEVIIT 82 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +EVEAL+LE N+IK LKPR+N+ L+DDK++PY++IT+ P + R FG Sbjct: 83 SSEVEALILENNLIKELKPRYNVNLKDDKTYPYLVITN-EPYPRILFTRHRRNDGSIAFG 141 Query: 124 PFASVDAVEKTINSL-----QRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 P+ + ++ + R+ LR D++ + + CL + I +C G C G + Sbjct: 142 PYTEARQLRSILDLIGSIFPVRSCKLRLTPDAIASGKYKVCLDYHIHKCKGACEGLQPED 201 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + + E K L G L + NM+ A + +E A + ++ +L + Sbjct: 202 EYRQMIDEIIKLLKGKTSALIRSLTENMHLAATELRFEQAAEIKAQIESLKRYAERQKVV 261 Query: 239 YNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 M D F++ ++ AC G+ G+ ++ + + A + L +FY Sbjct: 262 AADMVDRDVFAIAAGEDDACGVIFKIREGKLLGSQRIYINNTNGESEASMQLRMLEKFYV 321 Query: 296 D--KPCPENILLSEEAEETS--------LLEISFFKQYGYKVKITVPKQGEKRKIIEQAL 345 + +P P+ ILL E E L++ Q +++ VP+ G+K ++ Sbjct: 322 ESIEPVPDEILLQEALSEEEEETLRAFLLVKAKNEGQEKKGIRLVVPQIGDKAHLVGMCR 381 Query: 346 INAHRSHTQKLSTEISHQMILKD------FTKKFALPHIPKRIEIYDNSHIMGCSAVGCM 399 NA + L + ++ + LP +P+RIE +DNSH G V M Sbjct: 382 QNARHHLEEYLIQKQKRGEAAREHFGLTALKELLHLPTLPQRIECFDNSHFQGTDYVSSM 441 Query: 400 VVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS 459 V + K+ YRKF + + DD A M VL RR+S + Sbjct: 442 VCFEKGKTKKSDYRKFKIKT--FEGSDDYAAMDEVLRRRYSGSLTE-------------- 485 Query: 460 FPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALV 519 + PD++++DGGKGQ++ A L++L V I +I +AK + E F + Sbjct: 486 SLALPDLIVVDGGKGQVNTAYKTLQELGVT--IPVIGLAKRIE-----EIFTPHSSDPFN 538 Query: 520 LNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTV 578 L P L +Q+LRDEAHRFAIT HRK R + + L I GIG LL+ FG+V Sbjct: 539 LPKTSPALKLLQQLRDEAHRFAITYHRKLRSDRTLQTELTTIAGIGEKTAFKLLEHFGSV 598 Query: 579 KMISRSSPETLASIEGISKKIACKIYNHFHKN 610 + ++++S E L ++ I K +Y + Sbjct: 599 ESVAQASREELQAV--IGAKAGETVYTFYRPE 628 >gi|121609653|ref|YP_997460.1| excinuclease ABC subunit C [Verminephrobacter eiseniae EF01-2] gi|189038128|sp|A1WLD5|UVRC_VEREI RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|121554293|gb|ABM58442.1| Excinuclease ABC subunit C [Verminephrobacter eiseniae EF01-2] Length = 685 Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats. Identities = 202/676 (29%), Positives = 308/676 (45%), Gaps = 76/676 (11%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PGVY+ D G +LYVGKA +L++R+ SY N+ RI HM+ +I + TV + Sbjct: 13 LPALPGVYRYFDSQGLLLYVGKARHLKRRVASYFTKNHGGTRIGHMVCKIARLETTVVRS 72 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITD-----------KHKIPALYKHRDS 114 E EALLLE N+IK PRFNIL RDDKS+PY+ IT + P + +R + Sbjct: 73 EAEALLLENNLIKTQNPRFNILFRDDKSYPYLKITGAPASSAGRDAPGQRFPRIAYYRGA 132 Query: 115 STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE 174 Q YFGP+ S AV+++I LQ+ F LR+C D+VF +RTRPCLL+QIKRCSGPC Sbjct: 133 VDKQHRYFGPYPSAWAVKESIELLQKVFRLRTCEDTVFANRTRPCLLYQIKRCSGPCVNL 192 Query: 175 ISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234 I+ E Y V A+ LSG L + + M + + +E A R+++ ALS + + Sbjct: 193 IAPEAYAVDVQHAQALLSGQTQELLQAMEARMMAYSGQLAFEQAAEVRNQMQALSRVLHQ 252 Query: 235 NDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQIL----- 286 D ++ AC+ G++ G +F ++ + Sbjct: 253 QSIESAHDKDVDILAVRVQGGRACVNLAMVRGGRHLGDRPYFPTHLEDAALFEQETRDAE 312 Query: 287 ---------------SYFLRQFYTDKPCPENILLSEEAEETSLLEIS------------- 318 F+ Q Y P ++ S ++ L +S Sbjct: 313 EAPATPPRPVEALVLEAFVAQHYMVVAPPPVLVTSTPLDKALLEALSGHLTAAQGGDHAP 372 Query: 319 ---------------FFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 + + + ++R +E A NA + L+ E S Q Sbjct: 373 AAQGGDPPPAASSGGHPLRGTVHITAVHQPREQRRAWLEMAQKNADLQLARLLAQEGSQQ 432 Query: 364 MILKDFTKKFALP---HIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 + + LP P IE +D SH G + VV + ++YR++ + Sbjct: 433 ARTRALAEALDLPLADLDPLTIECFDISHTAGEATQASCVVFHHHKMQSSEYRRY--KID 490 Query: 421 DVKTQDDCAMMRMVLERRFSQLIK-----NEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 + DD A MR VL RR+ +L + + P PD+V++DGGKGQ Sbjct: 491 GITGGDDYAAMRQVLTRRYGKLAEAAHEAGGVDCAARPAAPAQGQARLPDLVLIDGGKGQ 550 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEAL-VLNMRDPILYFIQRLR 534 + A+ V L ++ I+ + KG R G+E+ G L L + ++R Sbjct: 551 VGVAREVFTALGLDLT-RIVGVEKGEGRKVGLEELVFADGREKASLGKDSAALMLVAQIR 609 Query: 535 DEAHRFAITTHRKRRKKAAY--SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 DEAHRFAIT R R + L EI G+GP ++ LLQ FG V+ ++ +S E L ++ Sbjct: 610 DEAHRFAITGMRAARARVRTGGGQLQEIAGVGPKKRARLLQRFGGVRGVASASVEDLITV 669 Query: 593 EGISKKIACKIYNHFH 608 +GIS+ +A +IY Sbjct: 670 DGISRALAEEIYRALR 685 >gi|228473114|ref|ZP_04057871.1| excinuclease ABC subunit C [Capnocytophaga gingivalis ATCC 33624] gi|228275696|gb|EEK14473.1| excinuclease ABC subunit C [Capnocytophaga gingivalis ATCC 33624] Length = 595 Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats. Identities = 183/624 (29%), Positives = 301/624 (48%), Gaps = 50/624 (8%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + +P+ PGVYQ D ++YVGKA NL+KR+ SY + + + + ++S+I I Sbjct: 7 LQVQTLPDNPGVYQFYDSTDTIIYVGKAKNLKKRVSSYFNKEHDSPKTRVLVSKIVRIEH 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE +ALLLE N+IK+ +PR+NILL+D KS+P+I I++ + P ++ R + Sbjct: 67 IVVATENDALLLENNLIKKYQPRYNILLKDGKSYPWICISN-ERFPRVFFTRKMLKDGST 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175 YFGP+ ++ V I+ ++ + LR+C +++ + + + CL + IK C GPC G Sbjct: 126 YFGPYTNLKIVRTLIDLIKDLYPLRNCRLDLSQENIDKGKFKVCLEYHIKNCQGPCEGLQ 185 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 S E+Y + + K+ L G + M + +E A + +L +L + Q+ + Sbjct: 186 SEEEYNHNIQQIKEILKGNLKEVIAYFKEEMQEHAAALRFEEAHQIKLKLESLENYQHKS 245 Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 + +D FS+ + A I G T +K E T ++L + + Sbjct: 246 TIVSTKIHNVDVFSIVSDGEYAYINFLQVAHGAIVRGHTLEVKKKLEETEQELLELAIVE 305 Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 L+ E +T+PK GEK ++++ + NA Sbjct: 306 LRERFHSASKELIVPFPLTMEFAE-----------TLTIPKAGEKFQLLQLSERNAQAYR 354 Query: 353 TQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 +K E +L + L P IE +DNS+I G + V VV Sbjct: 355 QEKFKQVKITDPERHTNRLLTQMQRDLRLSEPPAHIECFDNSNIQGTNPVAACVVFKNAK 414 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 K YR FN+ V+ +D A M V+ RR+ +L+ +E L P + Sbjct: 415 PSKKDYRHFNIKT--VEGPNDFASMEEVVYRRYRRLLDEDEPL--------------PQL 458 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526 +I+DGGKGQL AA L+ L + +I I+ IAK + E F+ L L+ + Sbjct: 459 IIIDGGKGQLGAALKSLELLGLRGKIAIVGIAKRLE-----EIFYPGDSVPLYLDKKSET 513 Query: 527 LYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 L IQ LR+EAHRF IT HR++R A +S L++I+G+G + LL+ F +VK + +S Sbjct: 514 LKVIQHLRNEAHRFGITFHRQKRSASAIHSELEQISGVGKQTQEALLKQFKSVKRLKEAS 573 Query: 586 PETLASIEGISKKIACKIYNHFHK 609 E + + G S+ A K++ +FH Sbjct: 574 KEEIIACIGHSR--AQKVWEYFHP 595 >gi|24379665|ref|NP_721620.1| excinuclease ABC subunit C [Streptococcus mutans UA159] gi|81446291|sp|Q8CWX4|UVRC_STRMU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|24377620|gb|AAN58926.1|AE014960_7 putative excinuclease ABC (subunit C) [Streptococcus mutans UA159] Length = 595 Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats. Identities = 171/617 (27%), Positives = 286/617 (46%), Gaps = 41/617 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D G ++YVGKA NL+ R++SY H +++T + ++S+I + + Sbjct: 8 KLELLPDSPGCYIHKDKNGTIIYVGKAKNLKNRVRSYFHGSHNT-KTELLVSEIEDFEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + EALLLE N+I+ KP++NI L+DDKS+P+I IT+ P L R G Y Sbjct: 67 VTGSNTEALLLEINLIQENKPKYNIRLKDDKSYPFIKITN-EPYPRLLITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ A + L R F + C + + C + + +C + + Sbjct: 126 FGPYPDSGAATEIKRLLDRLFPFKKCTNP----ANKVCFYYHLGQCKAHTICQTDQTYWD 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + K FL+G + + ++ M +A+ ++E A +RD + + ++ + Sbjct: 182 SLKEDVKNFLNGRDDKIVNELRDKMTKASELMEFERAAEYRDLIEGIGLLRTKQRVMNQD 241 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 M D F Y +K C+Q F G+ +ES + Sbjct: 242 MQDRDIFGYYVDKGWMCVQVFFIRQGKLIQRDVNMFPYYNESEEDFLTYVGQFYQDNRHF 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ I + +ET + + K P++GEK++++ A NA + Sbjct: 302 IPKEIFIPRNIDETLVKAVVNTKIIK-------PQRGEKKQLVNLATKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +++ +P RIE +DNS+I G S V MVV + K YRK Sbjct: 355 LEKDIRKTHGAIENIGDLLNIPKPV-RIEAFDNSNIQGTSPVAAMVVFVDGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + V DD A MR V+ RR+S+++++ + PD++I+DGG+G Sbjct: 414 FKIKT--VIGPDDYASMREVIYRRYSRVMRDG--------------LTPPDLIIIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+ + + I I + K K E F E + L + +QR++ Sbjct: 458 QVNVARDVI-ENKLGLDIPIAGLQKNDKHQT-HELLFGDPLEVIPLPRNSEEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K +S L+ I G+GP RK+LL++ F + I ++S + + + Sbjct: 516 DEVHRFAITFHRQLRGKNTFSSKLNGIAGLGPKRKQLLMKHFKNLPNIQKASLDDIIN-C 574 Query: 594 GISKKIACKIYNHFHKN 610 GI K +A I + Sbjct: 575 GIPKNVAENIQESLREE 591 >gi|253702631|ref|YP_003023820.1| excinuclease ABC subunit C [Geobacter sp. M21] gi|259710342|sp|C6E9G2|UVRC_GEOSM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|251777481|gb|ACT20062.1| excinuclease ABC, C subunit [Geobacter sp. M21] Length = 649 Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats. Identities = 203/619 (32%), Positives = 306/619 (49%), Gaps = 35/619 (5%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTV 62 E P PGVY M V+YVGKA NL+KR++SY + I M+ ++++ + V Sbjct: 8 ENFPSSPGVYLMKSADDTVIYVGKARNLKKRVRSYAGDTRDSRIHIRFMVQLVHSVDYLV 67 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EAL+LE +IK+ +P++NI LRDDK++ + + K + P L R + YF Sbjct: 68 TDTEKEALILENTLIKQHRPKYNINLRDDKTYFSLRMDMKEQFPRLSIVRKIPSDGARYF 127 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+AS A ++ + L + F LR + R RPCL QIK+CS PC G IS+ +Y Sbjct: 128 GPYASATAAKEVLKQLYKMFPLRHYPLATCMARKRPCLYHQIKQCSAPCCGLISAAEYAA 187 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRD--RLAALSHIQNHNDSIYN 240 A FL G N+ + MN A+ + YE A +RD R ++ + + Sbjct: 188 LAQGAALFLEGKNNEVARLYRSKMNLASEQMRYEDAARYRDLLRAIEVTVERQKMVAQSG 247 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DKPC 299 D F ++ + I G G +F + E+ + L+ FL ++Y D P Sbjct: 248 DSDVFGVHREADRMQIALLHIRGGTLTGGRSFLFDWELETE--EGLASFLNEYYDLDAPI 305 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P +L+ E + LE ++ G KV I VP++G K ++++ A NA + ++L+ E Sbjct: 306 PPQVLIPLPIAEPAALEELLSEKAGKKVTIAVPQRGPKLEMVKLAGKNAETAAQERLARE 365 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 S +L + +K LPH P+RIE YD S+I G AVG VV + K+ YR++ + Sbjct: 366 SSSATLLTELAEKLNLPHPPRRIECYDISNIQGEMAVGSRVVFIDGRADKSLYRRYRIKG 425 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 V DD AMMR VL RRF E+ PD++++DGG GQL Sbjct: 426 --VLQSDDFAMMREVLSRRFKADSHEEK----------------PDLIVVDGGLGQLGVL 467 Query: 480 QGVLKKLNVENRITIISIAK-GPKRSAGMEK--------FFVKKGEALVLNMRDPILYFI 530 VL +L V + +AK R E+ F + A+ L L + Sbjct: 468 NAVLDELEVTG-VEAAGLAKSRVARDMESEEIERSDERVFRPGRKNAIALRQSSAPLLLL 526 Query: 531 QRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R+RDEAHRFA+T H+ R K S LD + GIG RK+ LL+ FG++K + ++ E L Sbjct: 527 VRIRDEAHRFAVTYHKDVRSKVLTGSELDGVAGIGEKRKKALLKHFGSLKRVKEATLEEL 586 Query: 590 ASIEGISKKIACKIYNHFH 608 G+++ A + H Sbjct: 587 KGAPGMTESAARALVERLH 605 >gi|219669065|ref|YP_002459500.1| excinuclease ABC subunit C [Desulfitobacterium hafniense DCB-2] gi|219539325|gb|ACL21064.1| excinuclease ABC, C subunit [Desulfitobacterium hafniense DCB-2] Length = 591 Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats. Identities = 183/618 (29%), Positives = 296/618 (47%), Gaps = 49/618 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PGVY M D +G+++YVGKA L+ R++SY + H + MIS I + +T + Sbjct: 11 LPDKPGVYLMKDASGQIIYVGKAKVLKNRVRSYFTGS-HNGKTQLMISLIADFETIITDS 69 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 EVEALLLE N+IK+ P++NILLRDDK++P+I IT P + R G Y+GP+ Sbjct: 70 EVEALLLECNLIKKHNPKYNILLRDDKTYPFITIT-DEAHPRILVTRQVKKGAGKYYGPY 128 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + A ++ L R F R C + +PCL + + +C GPC ++ E Y + Sbjct: 129 PNATAAKEAARLLNRLFPFRKCR----QIPNKPCLYYHLGQCLGPCQVDVPKEAYDKIRK 184 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 EA FL G + + + + M +A+ ++E A +RD + L + + N Sbjct: 185 EAAAFLKGDQGAILKALEKKMKEASENLEFERAKEYRDLMEDLKKVGEKQNITLNDFVDR 244 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D + ++ CIQ + G+ F + FL QFYT+ Sbjct: 245 DVVGYAYTQDQLCIQIFYLRQGKLLSRDNFIFPY--YEEPEEAFVSFLAQFYTESSALPQ 302 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS- 361 +L + + L + VP++G+KR +++ A+ NA + +++S EI Sbjct: 303 EILLPPLDISVLT---------KLFPMVVPQKGQKRDLVQMAMENAQTTLHEQISIEIRN 353 Query: 362 ---HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 L + +P + IE +D S+I G +V M+ + ++QYRKF + Sbjct: 354 LTECTQALAEIGNALGIPSLR-TIESFDISNIAGTHSVAGMIQFLDGKPNRSQYRKFKIQ 412 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 P + DD A M V+ERR+++L + PD++++DGGKGQ+ A Sbjct: 413 P--MPNMDDTASMHQVIERRYARLQQEN--------------LPLPDLILVDGGKGQIHA 456 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A L LN I + + K K L+ R ++R+++E H Sbjct: 457 ALAALHSLNAA--IPVAGMVKNDKHQTSA--LIDAMDRIHSLDRRSAGFRLLERIQNEVH 512 Query: 539 RFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR++R K S LD I G+GP R++ LL+ F ++ I +++ E L G+ Sbjct: 513 RFAITFHRQQRAKSMTLSELDGIAGVGPKRRQQLLKFFKSIDSIRQATLEELQQ-SGLPA 571 Query: 598 KIACKIYNHF--HKNTSH 613 A +Y HF HK +H Sbjct: 572 PAAAAVYQHFNSHKEENH 589 >gi|320352580|ref|YP_004193919.1| Excinuclease ABC subunit C [Desulfobulbus propionicus DSM 2032] gi|320121082|gb|ADW16628.1| Excinuclease ABC subunit C [Desulfobulbus propionicus DSM 2032] Length = 620 Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats. Identities = 191/613 (31%), Positives = 305/613 (49%), Gaps = 28/613 (4%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSY--MHSNNHTHRITHMISQINNIRFTVTCT 65 PG+YQML +VLYVGKA +L+KR+ Y H+ + M+S + + +T T Sbjct: 29 HGPGIYQMLSKK-QVLYVGKARDLRKRLSQYAHFSGPIHS-KTAVMLSHVQRVETILTTT 86 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EAL+LEA++IK+ +PR+N++LRDDK++P I +T + P + R YFGP+ Sbjct: 87 EKEALILEASLIKQHRPRYNVILRDDKNYPLIKVTTRDPWPRVVVTRKRLRDGNRYFGPY 146 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 AS A+ T+ L F LR C R RTRPCL FQ+ RC PC G + +Y V Sbjct: 147 ASGTAMRATLQLLYAQFPLRRCK--TVRERTRPCLNFQMGRCLAPCAGLVDHAEYQRMVR 204 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 + L G + ++ M QA + +E A +RD++ L+ H + + Sbjct: 205 DVLLILEGKVDEVVRELTAKMEQAAEQLAFEKAARYRDQIRGLTRTIEHQAVVADHHLDQ 264 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F ++ I F G G +FFL ++ + L+ + ++ P Sbjct: 265 DVFGIHRQDASVGIALLFVRGGMITGAQSFFLADPLGEDDSLLAQTILQYYSVERQPPRE 324 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 +LL E+ L+ + V + P++G++ +++ A NA + ++K E S Sbjct: 325 LLLPFVLEDRDLIGERLAELREGPVSLLAPQRGKRMQLMRMAEANAAQIFSEKAKKEQSW 384 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 + + K L + P+ IE D S++ G AVG +V + ++R + + D Sbjct: 385 EALATGLQAKLRLANRPEIIECLDISNLQGKQAVGSLVCFVQGDKAAKRFRHYRIRSQDT 444 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD AMMR VLERR ++ + + + GGKGQL A V Sbjct: 445 P--DDYAMMREVLERRMAKGVAEDNLPDLLLLD---------------GGKGQLQVAVDV 487 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 L ++ +R+ +++IAK K+ G + F + ++L P+L ++ R+RDEAHRF I Sbjct: 488 LGAFDLLSRVDLMAIAK-EKQEEGEKLFRPGRKNPVLLPAHSPVLLYLMRIRDEAHRFGI 546 Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR+ R KA S LD I+GIGP RK++LL + G+V+ I+ + E LA + GI ++A Sbjct: 547 TFHRRLRGKAQLRSQLDAIDGIGPKRKQMLLHTLGSVRRIAEAGIEELAEVPGIGPELAK 606 Query: 602 KIYNHFHKNTSHT 614 +IY+ H Sbjct: 607 QIYSQLHGADHEP 619 >gi|323360113|ref|YP_004226509.1| nuclease subunit of the excinuclease complex [Microbacterium testaceum StLB037] gi|323276484|dbj|BAJ76629.1| nuclease subunit of the excinuclease complex [Microbacterium testaceum StLB037] Length = 647 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 189/641 (29%), Positives = 314/641 (48%), Gaps = 45/641 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + ++P PGVY+ D GRVLYVGKA NL+ R+ +Y ++ R M++ ++ + Sbjct: 15 KAGEIPTNPGVYRFRDAEGRVLYVGKAKNLRARLSNYFAPLHSLHERTRRMVTTAASVEW 74 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV ++V++L LE IK P FN+ +DDKS+PY+ IT + P + R+ Sbjct: 75 TVVPSDVDSLQLEYMWIKEFDPPFNVRYKDDKSYPYMAITLADEAPRVIVTRNHKIRGAK 134 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISS 177 YFGP+ V AV TI+ + + F +R+C+DS ++ RPC QI RC GPC+ +++ Sbjct: 135 YFGPYPKVWAVHDTIDLMIKVFPIRTCSDSSYKKAMQSGRPCFPGQIGRCGGPCSMKVTI 194 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND- 236 E++ V++ F+SGG+ +++ M +A+ DYESA ++RDRL A+ + + Sbjct: 195 EEHRAIVNDFVAFMSGGDQRFAKQLTARMKEASAAMDYESAALYRDRLQAIEAVLGKSAL 254 Query: 237 --SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D F + ++ A +Q G+ RG ++ + + A ++ L++ Y Sbjct: 255 VLAPDTDADLFGIAEDELAATVQHFVVRGGRVRGVRATTIEKEIDIAGADLVDQVLQRTY 314 Query: 295 TDKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 D P +L+ E ++ LE ++ G V + V ++G K +++ A +NA ++ Sbjct: 315 GDADAADIPRQVLVPELPDDAEQLEAWLRERRGRPVTLQVAQRGRKADLLKTATLNAQQA 374 Query: 352 HTQKLSTEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 + S L D + L P RIE +D SH+ G + V MVV + Sbjct: 375 LMLHKTRRTSDYVARSQALTDLQEALGLTEAPLRIECFDVSHLSGTNVVASMVVFEDGLP 434 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFH--------------- 452 K+QYR F + DD M VL RR + L + +E Sbjct: 435 RKDQYRSFGVAETT----DDTDSMYQVLTRRLAYLDRPDEEEPETIGGAIVAAPDSAEAT 490 Query: 453 ------PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAG 506 ++ F P ++++DGG+ Q++AA L I + IAK + Sbjct: 491 ADGEVVTARKRPRFAYRPQLLVVDGGQPQVTAAARALADAG-HEEIALCGIAKRLE---- 545 Query: 507 MEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPL 566 E + + ++L LY +QRLRDEAHRFAI RKRRK+ S L E+ G+G Sbjct: 546 -EVWLPGEEYPVILPRTSEALYLLQRLRDEAHRFAIVHQRKRRKRDITSVLAEVPGLGDT 604 Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 R + LL+ FG+V + ++P+ + ++ GI +A I+ H Sbjct: 605 RIKALLRHFGSVTALKNATPDEITALPGIGPALAEAIHTHL 645 >gi|142521|gb|AAA87316.1| deoxyribodipyrimidine photolyase [Bacillus subtilis subsp. subtilis str. 168] gi|1770045|emb|CAA99578.1| deoxyribodipyrimidine photolyase [Bacillus subtilis] Length = 598 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 172/602 (28%), Positives = 302/602 (50%), Gaps = 43/602 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D V+YVGKA L+ R++SY + H + ++++I + + VT + Sbjct: 12 LPDQPGCYLMKDRQQTVIYVGKAKVLKNRVRSYFTGS-HDAKTQRLVTEIEDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++N++L+DDK++P+I +T + P L R+ +G YFGP+ Sbjct: 71 NLEALILEMNLIKKHDPKYNVMLKDDKTYPFIKLT-HERHPRLIVTRNVKKDKGRYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A +T L R + LR C+ + R CL + + +C PC +IS E E V Sbjct: 130 PNVQAARETKKLLDRLYPLRKCS----KLPDRVCLYYHLGQCLAPCVKDISEETNRELVE 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 +FL GG + +K+++ M++A ++E A RD++A + N Sbjct: 186 SITRFLRGGYNEVKKELEEKMHEAAENLEFERAKELRDQIAHIESTMEKQKMTMNDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ ++K C+Q F G+ E+ + + P+ Sbjct: 246 DVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPLYQEADEEFLTFIGQFYSKNNHFLPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 IL+ + +++ + ++ + + PK+G K++++ A NA + + Sbjct: 306 ILVPDSIDQSMIEQLL-------ETNVHQPKKGPKKELLMLAHKNAKIALKEKFSLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E ++ + + + P RI +DNS+I G + V M+V + K +YRK+ + Sbjct: 359 EERSIGAVQKLGEALNI-YTPHRIVAFDNSNIQGTNPVSAMIVFIDGKPYKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V DD MR V+ RR++++++ PD++I+DGGKGQ++A Sbjct: 418 T--VTGPDDYGSMREVVRRRYTRVLREN--------------LPLPDLIIIDGGKGQINA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ V++ +L ++ I I +AK K E L Y +QR++DE Sbjct: 462 ARDVIENELGLD--IPIAGLAKDEKHRTSN-LLIGDPLEVAYLERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAI+ HR+ R K+A+ S LD+I GIG RK++LL+ FG+VK + +S E + G+ Sbjct: 519 HRFAISFHRQIRGKSAFQSVLDDIPGIGEKRKKMLLKHFGSVKKMKEASLEDIKKA-GVP 577 Query: 597 KK 598 ++ Sbjct: 578 QR 579 >gi|330832693|ref|YP_004401518.1| UvrABC system protein C [Streptococcus suis ST3] gi|329306916|gb|AEB81332.1| UvrABC system protein C [Streptococcus suis ST3] Length = 594 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 175/614 (28%), Positives = 302/614 (49%), Gaps = 41/614 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y + G+++YVGKA NL+ R++SY + T + ++++I + F Sbjct: 8 KLELLPDSPGCYLHKNKYGKIIYVGKAKNLRNRVRSYFRGAHDT-KTEALVAEIADFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+I+ KPR+NI+L+DDKS+P+I IT K + P L R G Y Sbjct: 67 VTDSNIEALLLEINLIQENKPRYNIMLKDDKSYPFIKIT-KERHPRLIITRQIKKDGGQY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A +T+ L+R + R C ++ CL + +++C S Y Sbjct: 126 FGPYPDVGAANQTLKLLERLYPFRKCKLPENKY----CLYYHLRQCLAHGDNMPSLSDYD 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + V E +FL+G + + +++ M A ++E A +RD L ++S ++ + + Sbjct: 182 KMVKEVAQFLTGHDDKIIKEVQDKMKAAAGNLEFEKAAEYRDVLQSISTLRTKQRVMAHD 241 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ +++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERNVNLFPYYNDADEDFLTYIGQFYRDQQHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ ++ ++ + K P++GEK+++I A NA + Sbjct: 302 IPSEVLIPQDIDQEAVEALVDTKVIK-------PQRGEKKQLINLATKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +++ + +P RIE +DNS+IMG S V MVV K +YRK Sbjct: 355 LEKNLEKTYGAVENIGQLLGIPTPV-RIEAFDNSNIMGTSPVSAMVVFENGVPNKKEYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + N V+ DD A MR VL+RR+S++++++ + PD++I+DGG+G Sbjct: 414 Y--KINTVEGPDDYASMREVLQRRYSRVLRDD--------------LTPPDLIIIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L + + R++ Sbjct: 458 QVNVAKQVIEQ-ELGMSIPIAGLQKNDKHQT-HELLFGNPLEVVELPRNSQEFFLLHRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAI HR+ R K ++S LD I G+GP RK+ L++ F ++ I +S + +A Sbjct: 516 DEVHRFAIEFHRQVRSKNSFSSKLDGIEGLGPKRKQALMKHFKSIGNIQSASLQEIAEA- 574 Query: 594 GISKKIACKIYNHF 607 G+ K+A K+ Sbjct: 575 GVPYKVAEKVKESL 588 >gi|33602318|ref|NP_889878.1| putative excinuclease ABC subunit C [Bordetella bronchiseptica RB50] gi|33576757|emb|CAE33835.1| putative excinuclease ABC subunit C [Bordetella bronchiseptica RB50] Length = 579 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 205/595 (34%), Positives = 315/595 (52%), Gaps = 28/595 (4%) Query: 24 YVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLKPR 83 YVGKA +L+KR+ SY N + RI M++++ ++ TVT +E EALLLE N+IK L+PR Sbjct: 2 YVGKARDLKKRVSSYFQKNLASPRIAQMVAKVASVDVTVTRSEAEALLLENNLIKSLRPR 61 Query: 84 FNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFF 143 +NIL RDDKS+PY+LIT H P + +R +++ +G YFGP+ + AV +TI LQ+ F Sbjct: 62 YNILFRDDKSYPYLLIT-GHAWPRIAYYRGATSKRGQYFGPYPNSWAVRETIQILQKVFR 120 Query: 144 LRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIA 203 LR+C D+VF +R+RPCLL QI RCS PC G I + Y V A +FL+G + ++I Sbjct: 121 LRTCEDTVFANRSRPCLLHQIGRCSAPCVGVIEAGDYAHDVQRAVRFLNGEAREVMDEIE 180 Query: 204 RNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNRMDCFSLYHNKNLACIQTCF 260 M QA+ + +E A + RD++ +LS + + + + D ++ C+ Sbjct: 181 ARMLQASTELRFEEAAVLRDQMGSLSKVLHQQTMENVGGDDTDVIAVASAGGKICVNLAM 240 Query: 261 FHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFF 320 G++ G FF AQ+L F+ Q Y D P ++ S ++ L+ + Sbjct: 241 VRGGRHLGDKPFFPTHAEGEQPAQVLEAFVAQHYADGAMPPVLVCSHALPDSGLVGLLAE 300 Query: 321 KQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPK 380 + ++ QG +R +EQA NA + + L+ + + L + Sbjct: 301 QGGTRAARVLTRPQGVRRSWLEQAQKNAEMALARALTESGARAGRTLALAEALDLDTDEE 360 Query: 381 -----RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVL 435 RIE +D SH G + VV + + YR++N+ + DD A MR VL Sbjct: 361 SLDALRIECFDISHTAGEATQASCVVFLHHDMQPSLYRRYNIVG--ITPGDDYAAMRQVL 418 Query: 436 ERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITII 495 RRF ++ E P +V++DGGKGQ+ A+ V +L ++ + +++ Sbjct: 419 TRRFGKVADGE--------------APMPGLVLIDGGKGQVEVARQVFVELGLDIQ-SLV 463 Query: 496 SIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY 554 +AKG R G+E G + L L I ++RDEAHRFAIT R RR K Sbjct: 464 GVAKGEGRKVGLETLVFADGRPPVALGKESAALMLIAQVRDEAHRFAITGMRARRAKTRN 523 Query: 555 -SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 S L+EI GIG R++ LL FG + +S +S E LAS+EGIS+++A +IY+ H Sbjct: 524 VSRLEEIEGIGARRRQRLLARFGGLSGVSSASIEDLASVEGISQELAVRIYDALH 578 >gi|172058170|ref|YP_001814630.1| excinuclease ABC, C subunit [Exiguobacterium sibiricum 255-15] gi|171990691|gb|ACB61613.1| excinuclease ABC, C subunit [Exiguobacterium sibiricum 255-15] Length = 594 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 183/618 (29%), Positives = 298/618 (48%), Gaps = 47/618 (7%) Query: 1 MSSEQ--MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNI 58 + ++ +P+ PG Y + G V+YVGKA NL+ R++SY H + +++ I + Sbjct: 7 IKAKLSLLPDEPGCYLHKNQFGEVIYVGKAKNLKNRVRSYFTGA-HDLKTERLVADIRDF 65 Query: 59 RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118 + +T +E+EALLLE +IK+ P++NI+L+DDKS+PY+ IT+ P L R Sbjct: 66 EYIITGSELEALLLEMTLIKKHDPKYNIMLKDDKSYPYLKITN-ETYPRLITTRKLKKDG 124 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 G YFGP+ + A +T L R + LR C + CL + I +C GPC Sbjct: 125 GHYFGPYPNAYAANETKRLLDRLYPLRKCQPMP----KKLCLYYHIGQCLGPCEIPNLEG 180 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 E V E ++FLSG +L + + + M+ A + ++E A RD++ A+ I N + Sbjct: 181 DQKEIVSEIRRFLSGETKDLVQSLQQKMSVAAEEMEFERAGELRDQIRAIESIMNKQNMI 240 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D F +Y +K C+Q F G+ T A+ L F+ QFY Sbjct: 241 TADLTARDVFGIYVDKGWMCVQVFFLRGGKMIERDVSLF--PIYGTPAEELESFIVQFYE 298 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P I + + L E + + P +G KRK+++ A NA + ++ Sbjct: 299 KNIKPSEIYVPPLVNQMLLKEALSLRVHV-------PVRGSKRKLLDLATKNAENAIGER 351 Query: 356 L----STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 E +++ + H RIEI DN++I G AV +VV + +K + Sbjct: 352 FELIARDEKKTVQAVQELADAIDI-HPLSRIEIIDNANIQGADAVSALVVFEDGKPLKKE 410 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YRKF + V DD MR ++ RR+ +L+ PD+V++DG Sbjct: 411 YRKFKIKT--VTGPDDYESMREIVRRRYRRLLLEG--------------ARLPDLVLIDG 454 Query: 472 GKGQLSAAQG-VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 G GQL+AA + +L + + + S+ K K F + G + L+ R Y + Sbjct: 455 GLGQLNAALEVIQDELGLS--LPVGSLKKDDKHRTSQ-LLFGEGGRLIELHPRSSAFYLL 511 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 QR++DE HRFAIT HR R K S LD+I G+GP R++ L++ FG+++ + +++ E L Sbjct: 512 QRMQDEVHRFAITFHRSLRSKGMTRSLLDDIPGVGPKRRQQLIRHFGSMRSLKKANIEQL 571 Query: 590 ASIEGISKKIACKIYNHF 607 G+ K+A + + Sbjct: 572 TEA-GLPVKLAETVAEYL 588 >gi|229135352|ref|ZP_04264142.1| UvrABC system protein C [Bacillus cereus BDRD-ST196] gi|228648105|gb|EEL04150.1| UvrABC system protein C [Bacillus cereus BDRD-ST196] Length = 594 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 177/611 (28%), Positives = 294/611 (48%), Gaps = 43/611 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 12 LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI L+DDK++P+I IT K P L R+ +G YFGP+ Sbjct: 71 NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T L R + LR C++ + CL + + +C PC E++ E+ E V Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTDEQNKEIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E KFL+GG+ ++ ++ M +A+ K ++E A RD++A + I I + Sbjct: 186 EIIKFLNGGHKEIRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ E + + P+ Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 I++ + + + +V+ T PK+G+K+ ++E A NA + Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFHLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E + + K+ + RIE +DNS+I G + V M+ + K +YRK+ + Sbjct: 359 EERTIKAVDNLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++ +K PD++I+DGGKG L+A Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------LPLPDLIIIDGGKGHLAA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 VL+ +L + I + + K K E ++L Y +QR++DE Sbjct: 462 TSDVLENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR K+ S LD+I GIG RK++LL+ FG++K + +S G+ Sbjct: 519 HRFAITFHRHLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASISEFVEA-GMP 577 Query: 597 KKIACKIYNHF 607 K +A IY + Sbjct: 578 KNVAEMIYTYL 588 >gi|89894629|ref|YP_518116.1| excinuclease ABC subunit C [Desulfitobacterium hafniense Y51] gi|119367647|sp|Q24WC0|UVRC_DESHY RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|89334077|dbj|BAE83672.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 607 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 183/618 (29%), Positives = 296/618 (47%), Gaps = 49/618 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PGVY M D +G+++YVGKA L+ R++SY + H + MIS I + +T + Sbjct: 27 LPDKPGVYLMKDASGQIIYVGKAKVLKNRVRSYFTGS-HNGKTQLMISLIADFETIITDS 85 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 EVEALLLE N+IK+ P++NILLRDDK++P+I IT P + R G Y+GP+ Sbjct: 86 EVEALLLECNLIKKHNPKYNILLRDDKTYPFITIT-DEAHPRILVTRQVKKGAGKYYGPY 144 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + A ++ L R F R C + +PCL + + +C GPC ++ E Y + Sbjct: 145 PNATAAKEAARLLNRLFPFRKCR----QIPNKPCLYYHLGQCLGPCQVDVPKEAYDKIRK 200 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 EA FL G + + + + M +A+ ++E A +RD + L + + N Sbjct: 201 EAAAFLKGDQGAILKALEKKMKEASENLEFERAKEYRDLMEDLKKVGEKQNITLNDFVDR 260 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D + ++ CIQ + G+ F + FL QFYT+ Sbjct: 261 DVVGYAYTQDQLCIQIFYLRQGKLLSRDNFIFPY--YEEPEEAFVSFLAQFYTESSALPQ 318 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS- 361 +L + + L + VP++G+KR +++ A+ NA + +++S EI Sbjct: 319 EILLPPLDISVLT---------KLFPMVVPQKGQKRDLVQMAMENAQTTLHEQISIEIRN 369 Query: 362 ---HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 L + +P + IE +D S+I G +V M+ + ++QYRKF + Sbjct: 370 LTECTQALAEIGNALGIPSLR-TIESFDISNIAGTHSVAGMIQFLDGKPNRSQYRKFKIQ 428 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 P + DD A M V+ERR+++L + PD++++DGGKGQ+ A Sbjct: 429 P--MPNMDDTASMHQVIERRYARLQQEN--------------LPLPDLILVDGGKGQIHA 472 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A L LN I + + K K L+ R ++R+++E H Sbjct: 473 ALAALHSLNAA--IPVAGMVKNDKHQTSA--LIDAMDRIHSLDRRSAGFRLLERIQNEVH 528 Query: 539 RFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR++R K S LD I G+GP R++ LL+ F ++ I +++ E L G+ Sbjct: 529 RFAITFHRQQRAKSMTLSELDGIAGVGPKRRQQLLKFFKSIDSIRQATLEELQQ-SGLPA 587 Query: 598 KIACKIYNHF--HKNTSH 613 A +Y HF HK +H Sbjct: 588 PAAAAVYQHFNSHKEENH 605 >gi|154499928|ref|ZP_02037966.1| hypothetical protein BACCAP_03585 [Bacteroides capillosus ATCC 29799] gi|150271526|gb|EDM98783.1| hypothetical protein BACCAP_03585 [Bacteroides capillosus ATCC 29799] Length = 616 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 175/622 (28%), Positives = 284/622 (45%), Gaps = 27/622 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +P PGVY M D V+YVGKA L+ R+ Y +HT + M+SQI++ Sbjct: 9 KAHALPLKPGVYIMQDKHNVVIYVGKAKALKNRVSQYFADLASHTEKTRAMVSQIDHFDV 68 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V +E EAL+LE+++IKR +P +NILL+DDK +PYI +T P ++ Sbjct: 69 IVADSEFEALVLESSLIKRHQPHYNILLKDDKGYPYIRLTVNEDYPRFSLANKAADDGAR 128 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S + + I++L+ L SC R + RPCL + + C G C + E Sbjct: 129 YFGPYGSRGSTQGIIDALRAALKLPSCNRRFPRDIGKERPCLNYHMGLCDGYCRFGMPQE 188 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + + +A + L G + ++I M QA + +E A RDR A+ + + Sbjct: 189 RYRDAIDQAIRLLEGQFKEVGDEIQAEMEQAAEELRFEKAAELRDRYRAIELLGKRQKVM 248 Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY- 294 D + +C + G+ ++T E A ++S +RQ+Y Sbjct: 249 AGSLADTDVVGFHRGTAKSCFVVLHYVDGELAAKDWDLMETPMEEEIADVVSALVRQYYG 308 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P ILL E E+ L + G +V + P++G K +I A NA + Sbjct: 309 ERNQLPRQILLPCEIEDEVPLARLLSENAGRRVNLITPQRGAKMDLIRLANKNAEEEVAR 368 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + E +L+ K L P R+E YD S+ V MVV +K YR+ Sbjct: 369 WTTKEERTSKLLELLAKMLKLDKPPMRMESYDISNQGADDIVASMVVYQNARPLKRDYRR 428 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F L + DD A M VL RRF + + +E F PD++++DGG+ Sbjct: 429 FKLKD--MDAPDDYASMEQVLTRRFRRYLDGDE-----------KFKDLPDLLLIDGGEN 475 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 A VL+ L + I + + K + +G + + + I +++ Sbjct: 476 HAKVAVKVLETLGLS--IPVFGMVKDDRHRTRA--LVTPEGREIGIQANQAVFSLIGQIQ 531 Query: 535 DEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 +E HRFAI HR+++ + S LD+I G+G R+ LL+ F +VK I ++ E L + Sbjct: 532 EETHRFAIEFHRQQQNQRVKGSVLDKIPGVGEKRRADLLKHFKSVKNIKAATLEELEAA- 590 Query: 594 GISKKIACKIYNHFHKNTSHTP 615 + K A +Y++F + P Sbjct: 591 -VPKNTAKAVYDYFRGTQASQP 611 >gi|221315115|ref|ZP_03596920.1| excinuclease ABC subunit C [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221324315|ref|ZP_03605609.1| excinuclease ABC subunit C [Bacillus subtilis subsp. subtilis str. SMY] Length = 598 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 173/602 (28%), Positives = 303/602 (50%), Gaps = 43/602 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D V+YVGKA L+ R++SY + H + ++++I + + VT + Sbjct: 12 LPDQPGCYLMKDRQQTVIYVGKAKVLKNRVRSYFTGS-HDAKTQRLVTEIEDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++N++L+DDK++P+I +T + P L R+ +G YFGP+ Sbjct: 71 NLEALILEMNLIKKHDPKYNVMLKDDKTYPFIKLT-HERHPRLIVTRNVKKDKGRYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A +T L R + LR C+ + R CL + + +C PC +IS E E V Sbjct: 130 PNVQAARETKKLLDRLYPLRKCS----KLPDRVCLYYHLGQCLAPCVKDISEETNRELVE 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 +FL GG + +K+++ M++A ++E A RD++A + N Sbjct: 186 SITRFLRGGYNEVKKELEEKMHEAAENLEFERAKELRDQIAHIESTMEKQKMTMNDLVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ ++K C+Q F G+ E+ + + P+ Sbjct: 246 DVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPLYQEADEEFLTFIGQFYSKNNHFLPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 IL+ + +++ + ++ + + PK+G K++++ A NA + + Sbjct: 306 ILVPDSIDQSMIEQLL-------ETNVHQPKKGPKKELLMLAHKNAKIALKEKFSLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E ++ + + + P RIE +DNS+I G + V M+V + K +YRK+ + Sbjct: 359 EERSIGAVQKLGEALNI-YTPHRIEAFDNSNIQGTNPVSAMIVFIDGKPYKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V DD MR V+ RR++++++ PD++I+DGGKGQ++A Sbjct: 418 T--VTGPDDYGSMREVVRRRYTRVLREN--------------LPLPDLIIIDGGKGQINA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ V++ +L ++ I I +AK K E L Y +QR++DE Sbjct: 462 ARDVIENELGLD--IPIAGLAKDEKHRTSN-LLIGDPLEVAYLERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAI+ HR+ R K+A+ S LD+I GIG RK++LL+ FG+VK + +S E + G+ Sbjct: 519 HRFAISFHRQIRGKSAFQSVLDDIPGIGEKRKKMLLKHFGSVKKMKEASLEDIKKA-GVP 577 Query: 597 KK 598 ++ Sbjct: 578 QR 579 >gi|46446331|ref|YP_007696.1| putative excinuclease ABC subunit C [Candidatus Protochlamydia amoebophila UWE25] gi|81627340|sp|Q6MDC8|UVRC_PARUW RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|46399972|emb|CAF23421.1| putative Excinuclease ABC subunit C [Candidatus Protochlamydia amoebophila UWE25] Length = 610 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 195/618 (31%), Positives = 303/618 (49%), Gaps = 29/618 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRF 60 + P PGVY M + G VLYVGKA NL++R+K Y I +++++IN I Sbjct: 7 KIDLFPTLPGVYLMKNEEGEVLYVGKAKNLRQRVKQYFVPGRDGRLMIPYLVAKINYIET 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIP--ALYKHRDSSTIQ 118 V +E EALLLE N+IK+ KPR+N LL+DDKS+ + I+ L +++ + Sbjct: 67 IVVTSEKEALLLENNLIKQHKPRYNALLKDDKSYIALKISQNDAWATVRLVRYKGTPEPD 126 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 G YFGP+ S A +T++ L R F LR C+D F RTRPCLL+Q+KRC GPCT + + Sbjct: 127 GLYFGPYTSAQAARQTLDLLNRLFPLRQCSDQEFARRTRPCLLYQMKRCVGPCTQKCTKG 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + + KFL G N ++ + + M + + ++E A + + Sbjct: 187 EYQQHLDRTIKFLRGQNKDVLKDLYEEMRLLSEQLEFEKANHLLRTIRYIEKTIESQYVD 246 Query: 239 ---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D L+ + F G+ G+ F E + + S+ L+ + Sbjct: 247 RPLGHDADAIGLFRYGEHVVVVLMIFRGGKLVGSRHFEFDNIIEEDHELLTSFLLQHYEG 306 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P ILL + + +E + KV + +P++GEK+ +IE A NA + Sbjct: 307 ATEIPSEILLPSKISDEHPVEEILSARREQKVNLQIPQRGEKKALIEIAQKNAEALFKTQ 366 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 + L + + L + P RIE +DNS+I G V MV + +YR + Sbjct: 367 KDEATLREKTLLEMQELLFLTNYPTRIECFDNSNIAGSEPVSSMVAFTDGLKDSKRYRTY 426 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 L DD A M VL RR+ + + + PD+V++DGGKGQ Sbjct: 427 RLKI--GSKPDDYAAMYEVLTRRYKRAKEEND---------------MPDLVVVDGGKGQ 469 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRS----AGMEKFFVKKGEALVLNMRDPILYFIQ 531 L+ A V ++LN+ + ++ +AK R + F + E ++L PIL+ +Q Sbjct: 470 LNIAIKVFEELNITG-VDLLGLAKEAGRHDKGMTAEQVFTCYQKEPILLKANSPILFLLQ 528 Query: 532 RLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 ++RDEAHR AI+ HRKRR KK S LD+I GIGP +++ LL FG++K I ++ L Sbjct: 529 KIRDEAHRVAISFHRKRRSKKTLKSALDDIPGIGPAKRKTLLTHFGSLKKIELAADAELR 588 Query: 591 SIEGISKKIACKIYNHFH 608 ++GIS I F Sbjct: 589 EVKGISAANIEAIRTFFQ 606 >gi|305666036|ref|YP_003862323.1| excinuclease ABC subunit C [Maribacter sp. HTCC2170] gi|88710811|gb|EAR03043.1| excinuclease ABC, C subunit [Maribacter sp. HTCC2170] Length = 596 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 192/624 (30%), Positives = 300/624 (48%), Gaps = 50/624 (8%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + +P PGVYQ D A +LYVGKA NL+KR+ SY + N+ + ++ +I +I+ Sbjct: 8 IQISTLPNSPGVYQFYDEADTILYVGKAKNLKKRVSSYFNKNHEYGKTRILVKKIRSIKH 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE +ALLLE+N+IK+ +PR+N+LL+DDKS+P+I I K + P ++ R Sbjct: 68 IVVSTESDALLLESNLIKKYRPRYNVLLKDDKSYPWICI-KKERFPRIFPTRKLIKDGSE 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175 YFGP+ S+ V+ + ++ + LR+C + + + + CL + + C GPC G Sbjct: 127 YFGPYTSMYTVKTLLELIRNVYPLRTCNYDLSEEKIKSGKYKLCLEYHLGNCLGPCEGLQ 186 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 SS Y + + E + L G + + M +E A +D++A L + Q+ Sbjct: 187 SSSDYDKQIDEIRSILKGNFKSSLQSFKNQMKLLADDMLFEEAQQIKDKIAVLENYQSKT 246 Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 N +D FS+ + + A + G + T +K E + +L + + Sbjct: 247 TIVNPKINNVDVFSIIADDSFAYVNFLQISLGAIIRSHTMEIKKKLEEKDEDLLQLAIFE 306 Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 + L + + VPK G+KRKI++ ++ NA Sbjct: 307 IRQRFNSESKEIY--------LPFKVVVEPHIKVT---VPKLGDKRKILDLSIRNAKYFR 355 Query: 353 TQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 ++ + E I+ K L P+ IE +DNS+I G + V VV Sbjct: 356 QERFNQIKIVDPERHTNRIMAQMQKDIRLSTEPRHIECFDNSNIQGSNPVAACVVFKNGK 415 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 K +YR +N+ V DD A M V+ RR+ +L+ + L P + Sbjct: 416 PSKKEYRHYNIKT--VVGPDDFASMEEVVYRRYKRLLDETQPL--------------PQL 459 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526 +++DGGKGQLS+A L L + +I II IAK + E +F + L L+ + Sbjct: 460 IVIDGGKGQLSSALKSLDILGLRGKIAIIGIAKRLE-----EIYFPEDPIPLYLDKKSES 514 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 L IQ+LR+EAHRF IT HR +R K A S L+ ING+G R LL+ F +VK I +S Sbjct: 515 LKIIQQLRNEAHRFGITLHRNKRSKAAINSTLENINGVGEKTARDLLKKFKSVKRIKEAS 574 Query: 586 PETLASIEGISKKIACKIYNHFHK 609 E +A + GISK A KI F K Sbjct: 575 IEDIAQVVGISK--AKKIVETFRK 596 >gi|229543623|ref|ZP_04432683.1| excinuclease ABC, C subunit [Bacillus coagulans 36D1] gi|229328043|gb|EEN93718.1| excinuclease ABC, C subunit [Bacillus coagulans 36D1] Length = 590 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 188/613 (30%), Positives = 308/613 (50%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D G ++YVGKA L+ R++SY + H + ++S+I + + VT + Sbjct: 12 LPAQPGCYLMKDRQGTIIYVGKAKILKNRVRSYFSGS-HDAKTQRLVSEIEDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++NI+L+DDK++PYI +T + P L R +G YFGP+ Sbjct: 71 NIEALILEINLIKKHDPKYNIMLKDDKTYPYIKLT-HERHPRLITTRKVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A +T L R + LR C + R CL + + +C PC E+ E Y E Sbjct: 130 PNVQAANETKKLLDRLYPLRKCTNMP----DRVCLYYHLGQCLAPCVNEVKEETYKEITD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRM 242 + +FL+GG +K+++ M++A K ++E A +RD++A + + Sbjct: 186 QITRFLNGGYTEIKKELEEKMHEAAEKLEFERAKEYRDQIANIEMTMEKQKITMTDFTDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ L + + LSY + + + Sbjct: 246 DIFGYAVDKGWMCVQVFFMRQGKLIERD-VSLFPSYDEPEEEFLSYLGQFYAKPEHIKPK 304 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358 +L E + L E +K+ PK+G+KR+++ A NA + +K Sbjct: 305 EVLITEKADRELAEQLLE------IKVLQPKKGQKRELVLMAEKNAKIALKEKFALIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ +K + + P RIE +DNS+I G + V MVV + K +YRK+ + Sbjct: 359 EERTIKAVENLGEKLGI-YTPHRIEAFDNSNIQGTNPVSAMVVFVDGKPAKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+ + ++ PD++I+DGGKGQ+ A Sbjct: 418 T--VEGPDDYESMREVIRRRYIRALREN--------------LPLPDLIIIDGGKGQIDA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ VL+ +L +E I I +AK K + F E + L Y +QR++DE Sbjct: 462 ARDVLENELGLE--IPIGGLAKDEKHNTSQ-LLFGNPLEVVPLGRNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R K+A+ S LD+I GIGP RK+ LL+ FG++K + ++ E GI Sbjct: 519 HRFAITFHRELRGKSAFQSALDDIPGIGPKRKKQLLRHFGSLKKMKQAKLEEFVEA-GIP 577 Query: 597 KKIACKIYNHFHK 609 + ++ + + Sbjct: 578 RPVSEALIKKLQE 590 >gi|297621141|ref|YP_003709278.1| UvrABC system protein C [Waddlia chondrophila WSU 86-1044] gi|297376442|gb|ADI38272.1| UvrABC system protein C [Waddlia chondrophila WSU 86-1044] Length = 648 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 202/615 (32%), Positives = 307/615 (49%), Gaps = 32/615 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFT 61 + PGVY M D AG+V+YVGKA NL++R++ Y I ++S++ +I Sbjct: 53 LKAFSTKPGVYLMKDKAGKVIYVGKAKNLRQRVRQYFVKGGDGRFMIPFLVSKVESIETV 112 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHR--DSSTIQG 119 V +E EALLLE N+IK+ KPR+N LL+DDKS+ + +T H P + R G Sbjct: 113 VVSSEKEALLLENNLIKKHKPRYNALLKDDKSYIALKLTRHH-WPRIDLVRYKGKPKADG 171 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 YFGP+A A KT++ L + F LR C+D F R RPC+L+ IK+C PC G S E+ Sbjct: 172 IYFGPYAHAGAARKTLDLLHKIFPLRQCSDQEFARRNRPCILYDIKKCVAPCVGYCSKEE 231 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y E +A +FL G + + + R M + + + YE A + ++ Sbjct: 232 YDELAAKAVRFLRGNDKEVIRDLYRKMERCSSEMQYEQAAEIYRTIQSIEKTVEGQHVDK 291 Query: 240 N---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 D L+ + F G+ G+ F ++ + + +++ F+ Q Y D Sbjct: 292 PLGVDADALGLHREGEEVLLALLMFKSGRLTGSKCFSFRSIA-QDDQELVQSFIFQHYAD 350 Query: 297 KPC-PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P P ++ + EE +++ + K+ I PK+GEKRK++E A +NA ++ Sbjct: 351 LPSLPHEVIAPLDIEEGAIIAEHLSEGRSRKLSIISPKRGEKRKLVEMAAMNAESEFRKE 410 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 + + L KF L PKRIE +D S I G V V + + YRK+ Sbjct: 411 KDADAIIERTLLQMRDKFHLSRYPKRIECFDISTISGEETVATKVAFLDGKKDASAYRKY 470 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 + + DD M L RRF + K PD++++DGGKG Sbjct: 471 KIKT--LDRPDDYGAMYEALIRRFRKAEKEN---------------HLPDLLMIDGGKGH 513 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK----FFVKKGEALVLNMRDPILYFIQ 531 L+ A VL++LN+ + +I +AK R + F + L+L+ IL+F+Q Sbjct: 514 LNVALRVLQELNI-ISVDVIGLAKEDSRHDKGQTLDQVFLPNVKDPLLLSRHSQILFFLQ 572 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 ++RDEAHR AI HRKRR KA S LD++ GIG RK+ LL+ FG++K I +S E L Sbjct: 573 KIRDEAHRTAIAFHRKRRSKALIKSALDDVPGIGNARKKALLKHFGSLKKIKEASIEELV 632 Query: 591 SIEGISKKIACKIYN 605 SI GIS+++A I Sbjct: 633 SIPGISEQLAELIRR 647 >gi|290580340|ref|YP_003484732.1| putative excinuclease ABC subunit C [Streptococcus mutans NN2025] gi|254997239|dbj|BAH87840.1| putative excinuclease ABC subunit C [Streptococcus mutans NN2025] Length = 595 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 170/617 (27%), Positives = 286/617 (46%), Gaps = 41/617 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D G ++YVGKA NL+ R++SY H +++T + ++S+I + + Sbjct: 8 KLELLPDSPGCYIHKDKNGTIIYVGKAKNLKNRVRSYFHGSHNT-KTELLVSEIEDFEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + EALLLE N+I+ KP++NI L+DDKS+P+I IT+ P L R G Y Sbjct: 67 VTGSNTEALLLEINLIQENKPKYNIRLKDDKSYPFIKITN-EPYPRLLITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ A + L R F + C + + C + + +C + + Sbjct: 126 FGPYPDSGAATEIKRLLDRLFPFKKCTNP----ANKVCFYYHLGQCKAHTICQTDQTYWG 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + K FL+G + + ++ M +A+ ++E A +RD + + ++ + Sbjct: 182 SLKEDVKNFLNGRDDKIVNELRDKMTKASELMEFERAAEYRDLIEGIGLLRTKQRVMNQD 241 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 M D F Y +K C+Q F G+ +ES + Sbjct: 242 MQDRDIFGYYVDKGWMCVQVFFIRQGKLIQRDVNMFPYYNESEEDFLTYVGQFYQDNRHF 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ I + + +ET + + K P++GEK++++ A NA + Sbjct: 302 IPKEIFIPRDIDETLVKAVVNTKIIK-------PQRGEKKQLVNLATKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +++ +P RIE +DNS+I G S V MV + K YRK Sbjct: 355 LEKDIRKTHGAIENIGDLLNIPKPV-RIEAFDNSNIQGTSPVAAMVAFVDGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + V DD A MR V+ RR+S+++++ + PD++I+DGG+G Sbjct: 414 FKIKT--VIGPDDYASMREVIYRRYSRVMRDG--------------LTPPDLIIIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+ + + I I + K K E F E + L + +QR++ Sbjct: 458 QVNVARDVI-ENKLGLDIPIAGLQKNDKHQT-HELLFGDPLEVIPLPRNSEEFFLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K +S L+ I G+GP RK+LL++ F + I ++S + + + Sbjct: 516 DEVHRFAITFHRQLRGKNTFSSKLNGIAGLGPKRKQLLMKHFKNLPNIQKASLDDIIN-C 574 Query: 594 GISKKIACKIYNHFHKN 610 GI K +A I + Sbjct: 575 GIPKNVAENIQESLREE 591 >gi|293390239|ref|ZP_06634573.1| excinuclease ABC, C subunit [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950773|gb|EFE00892.1| excinuclease ABC, C subunit [Aggregatibacter actinomycetemcomitans D7S-1] Length = 609 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 207/617 (33%), Positives = 339/617 (54%), Gaps = 32/617 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+M D V+YVGKA +L+KR+ SY + + +++ I +I T+T Sbjct: 11 NVPHLPGVYRMYDDKSTVIYVGKAKDLKKRLSSYFRKQLSSKKTEALVASIQHIETTITT 70 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N IK +PR+N+LLRDDKS+PYIL+T K P + +R S IQG YFGP Sbjct: 71 SETEALLLEHNYIKTYQPRYNVLLRDDKSYPYILLT-KETHPRITAYRGSKKIQGEYFGP 129 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183 + + AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RC PC +++E Y + Sbjct: 130 YPNAGAVRETLSLLQKLFPIRQCENSVYNNRSRPCLQYQIGRCLAPCVKGYVTNEAYAQQ 189 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD 243 V+ A+ FL G + + + + + M QA+ + ++E A RD++ A+ + +R D Sbjct: 190 VNFARLFLQGKDQQVLDHLVKQMEQASQQLNFEEAARIRDQIQAVRAVIEKQFVANDRHD 249 Query: 244 C---FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296 ++ + +AC+Q F G+ G ++F K S + A++ F+ QFY Sbjct: 250 DIDIIAIAYQLGVACVQVLFIRQGKILGNRSYFPKVPSNTNLAELTETFVGQFYLQAHQG 309 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 + P I++ ++ +E LE Q G KV I +G+K K ++ A +NA + KL Sbjct: 310 RTIPNTIIVDQKLDEKVDLETLLSDQAGRKVSIQDHAKGDKSKYLQLAQMNAKAALVTKL 369 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + + I R+E +D SH MG + VV ++G +K+ YR+FN Sbjct: 370 KQSTLQHDRYVALQELLGIAVIK-RMECFDISHTMGEQTIASCVVFNQDGPLKSDYRRFN 428 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + + DD A M L +R+ + +++++ PD++ +DGGKGQL Sbjct: 429 I--SGITKGDDYAAMEQALLKRYDKDLEDDKT---------------PDIIFIDGGKGQL 471 Query: 477 SAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQR 532 + A V + LNV +N+ +I +AKG R AG+E + K + L L L+ IQ Sbjct: 472 NRALQVFENLNVKWNKNQPHLIGVAKGVDRRAGLETLILSKWDKELHLPADSLALHLIQH 531 Query: 533 LRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+H AI+ HRK+R++ S L+ I G+G R++ LL+ G ++ + ++ + +AS Sbjct: 532 IRDESHNHAISGHRKKRQQYFTQSGLESIEGVGAKRRQALLKYLGGLQGVKNATLDEIAS 591 Query: 592 IEGISKKIACKIYNHFH 608 + GISK +A KI+ Sbjct: 592 VPGISKALAEKIFETLQ 608 >gi|160893084|ref|ZP_02073872.1| hypothetical protein CLOL250_00629 [Clostridium sp. L2-50] gi|156865167|gb|EDO58598.1| hypothetical protein CLOL250_00629 [Clostridium sp. L2-50] Length = 604 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 187/622 (30%), Positives = 297/622 (47%), Gaps = 37/622 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M + ++YVGKA +L R+ Y + + +I M+S I + Sbjct: 7 ELKKLPHTPGVYLMHNKTDEIIYVGKAIDLYNRVHQYFQAGYKRSPKIEKMVSHIAWFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 + +E+EAL+LE N+IK +P +N +L DDKS+PYI IT P + Sbjct: 67 IICESEIEALVLECNLIKEHRPHYNTMLTDDKSYPYIKITVNEDFPRILFSHQMHRDHAR 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ + AV+ TI+ L++ + LRSC + + RPCL + I +C PC G IS E Sbjct: 127 YFGPYTNAGAVKDTIDLLKKLYHLRSCNKKLPQETGLDRPCLYYHIGQCKAPCQGYISKE 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y V +A FL+G + +++ M Q ++E A RD + ++ HI + Sbjct: 187 DYGRQVEQAIHFLTGHHRQTVKELEEKMKQLAADMEFEQAAEVRDLIESIKHIASKQRVD 246 Query: 239 YNRMDC----FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 D +N N I F G+ G F + + I++ FL+Q+Y Sbjct: 247 NTTTDDRDVIAMAANNMNEGVISVFFIRNGKMIGREHFHMTGVQSESYGDIMAAFLKQYY 306 Query: 295 TDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH---- 349 P P+ I+L E E L+E ++ G V I P++G+K K+++ A NA Sbjct: 307 ASTPFLPKEIILEHEVNEQELIEQYLSERRGNLVHILTPQKGDKAKLLKLARDNAFLVLT 366 Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 + + + + K+ + +P R+E +D SHI G +V MVV Sbjct: 367 QDTEKLKREQARTEGAAKELAELIGVPSAK-RLEAFDISHISGYHSVASMVVFENGKARP 425 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 N+YRKF L + DD A MR VL RRF+ + F +PD++++ Sbjct: 426 NEYRKFKLRT--IDGPDDYASMREVLTRRFT----------------DERFKVYPDILMM 467 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ++ A VL +L++ I + + K F + + Sbjct: 468 DGGKGQVNIALEVLNELHL--NIPVCGMVKDDYHRTRGLYF---NNKEVEFPKNTQAFDM 522 Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 + RL+DEAHRFAI HR R K+ +S L++I GIGP R++ L+ F + I +S + Sbjct: 523 VTRLQDEAHRFAIEYHRSLRSKSQVHSILEDIPGIGPARRKDLMGYFKDIAKIREASVDE 582 Query: 589 LASIEGISKKIACKIYNHFHKN 610 L + +++ A +Y FHK Sbjct: 583 LMQVSSMNRNAAEMVYEFFHKE 604 >gi|158522386|ref|YP_001530256.1| excinuclease ABC, C subunit [Desulfococcus oleovorans Hxd3] gi|158511212|gb|ABW68179.1| excinuclease ABC, C subunit [Desulfococcus oleovorans Hxd3] Length = 626 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 194/616 (31%), Positives = 302/616 (49%), Gaps = 27/616 (4%) Query: 3 SEQM---PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNI 58 +E++ P PGVY M D AG ++YVGKA+NL+KR+ SY + ++ ++ + Sbjct: 19 AEKLAGAPARPGVYLMKDGAGAIIYVGKAFNLKKRLASYFVKKERLDLKTGLLMERVVDF 78 Query: 59 RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118 VT TE EAL+LEA++I+R KPR+N+LL+DDK +P + I + PAL R + Sbjct: 79 DTIVTATENEALILEASLIRRHKPRYNVLLKDDKRYPSLRIDPRQPYPALEIVRKTRPDG 138 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 YFGPF+S AV +T+ + +TF LR C VF+ R+RPC+ FQ+ C GPC ++ Sbjct: 139 AVYFGPFSSARAVRETLKVVDKTFRLRKCRGKVFKKRSRPCINFQMGLCLGPCFYDVPEN 198 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 Y E V E FL G L + M A +++E A + RDRL A+ + Sbjct: 199 DYAEAVREVSLFLKGRATELVSDLRVRMKGAAENQEFEKAALLRDRLFAIEKVIEKQVVV 258 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D ++ + + G GT F + S + ++ ++ + Sbjct: 259 TPDFADRDVIAVAEEGRRSVVALLQVRKGVLSGTRFFHFEELLSSVADSLATFMVQYYTE 318 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P+ IL + +V + VP++GEK +I+ A NA Sbjct: 319 PGRVPDEILTDGTPFGGPWIADHLRDLAEKRVNMAVPRRGEKFLLIKMARENAQNELAAA 378 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 HQ L+ +K L +P RI DNSH+ G V +VV + + YR++ Sbjct: 379 ALGARKHQKTLERLARKLGLSDVPARIACVDNSHLAGTGTVAAVVVFADGVPDPSAYRRY 438 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 L V DD A M+ VL RRF D++++DGG+GQ Sbjct: 439 RL--AGVPAADDYAAMKQVLVRRF---------------AAGADDAGPVDLLLVDGGRGQ 481 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRS--AGMEKFFVKKGEALVLNMRDPILYFIQRL 533 L+ A VL++ + ++ + +I+K + + + + + L DP L+ ++ + Sbjct: 482 LNIAAAVLQEAGLAGKMGVAAISKKDEAKEETADKVYVPGRRNPVNLGPADPALFLLEEI 541 Query: 534 RDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDEAHRFAI RK RK+ + S LD+I GIGP RKR+LL FGTV+ + +S E LA++ Sbjct: 542 RDEAHRFAIDYQRKERKRISLRSALDDIPGIGPQRKRMLLDRFGTVEGVRAASVEDLAAL 601 Query: 593 EGISKKIACKIYNHFH 608 GI+ +A +I H Sbjct: 602 PGITGSMAGQIREHLR 617 >gi|51246330|ref|YP_066214.1| excinuclease ABC subunit C [Desulfotalea psychrophila LSv54] gi|81641459|sp|Q6AKB8|UVRC_DESPS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|50877367|emb|CAG37207.1| related to excinuclease ABC, subunit C [Desulfotalea psychrophila LSv54] Length = 607 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 204/613 (33%), Positives = 320/613 (52%), Gaps = 23/613 (3%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTVTCT 65 P PGVY MLD RV+YVGKA +L KR+ SY S++ ++ T M+ ++ ++ +T T Sbjct: 13 PHKPGVYLMLDAKARVIYVGKAKDLVKRLTSYTRHSSSEHNKTTVMLKKVEQVKTIITTT 72 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EAL+LEA++IK+ KPR+NI+LRDDK++PYI +T + P + R YFGP+ Sbjct: 73 EKEALILEASLIKKHKPRYNIILRDDKNYPYIAVTVGEEWPRVMMVRRKRRDNSRYFGPY 132 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +S A+ T+ + F LR+C R RTRPCL QI +C PCTG +S + YME V Sbjct: 133 SSATAMWATLKLIASLFPLRNCRGEKLRPRTRPCLNRQIGKCLAPCTGNVSRKIYMENVD 192 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR---M 242 + L G + +L ++ R M QA+ + ++E A RD++ AL Sbjct: 193 KILLLLQGKSRDLLAELKRQMLQASERLNFEQAGQFRDQIRALKTTLEKQLVAAGHGKNQ 252 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F + + F G G+ +FF++ + + + + + P P+ Sbjct: 253 DVFGYVRSGTTVAVNILFVRDGLVSGSRSFFIEDYFGLDSQVLSQTISQYYDRETPPPKE 312 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 ILL E LL + ++I +P++G+ ++E A NA + +K E S Sbjct: 313 ILLPFSPENFELLSEYLADFTTHILQIKIPQRGDSTILVEMANTNARQLFAEKEKKERSW 372 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 Q + K +K L P+ IE D S+I G A+G +V K+++R + + + Sbjct: 373 QSLGKSIKEKLQLSRTPETIECLDISNISGQHAIGSLVCFSGGEANKSRFRHYKIRT--I 430 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 + DD MMR V+ERRF + IK + P++ ++DGGKGQL A V Sbjct: 431 EGPDDYGMMREVMERRFKRGIKE---------------GNLPNLFVVDGGKGQLGMAMAV 475 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 ++L + N + I IAK + G + + + ++L P+L ++ R+RDE+HR+ I Sbjct: 476 ARELGITNELDWIGIAK-ERHEEGEKLYKPGRKNPILLPAHSPVLLYLMRIRDESHRYGI 534 Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HRK R +A S LDEI GIG RK+LLL+ G++K I +S + L +EGI +A Sbjct: 535 TFHRKLRNRATLSSELDEIEGIGDNRKKLLLKKIGSLKKIKEASLQKLQEVEGIGPLLAK 594 Query: 602 KIYNHFHKNTSHT 614 KIY ++ + + Sbjct: 595 KIYTSLQRDKNKS 607 >gi|88856199|ref|ZP_01130859.1| excinuclease ABC subunit C [marine actinobacterium PHSC20C1] gi|88814518|gb|EAR24380.1| excinuclease ABC subunit C [marine actinobacterium PHSC20C1] Length = 640 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 190/635 (29%), Positives = 300/635 (47%), Gaps = 42/635 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D RVLYVGKA NL+ R+ +Y ++ R M+ N+ +T+ Sbjct: 13 DIPIQPGVYRFTDERKRVLYVGKAKNLRSRLSNYFAPLSSLHERTRRMVLSAVNVEWTIV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 + EAL LE IK P FN+ +DDKS+PY+ IT +P + R+ + YFG Sbjct: 73 GNDFEALQLEYTWIKEFDPPFNVQYKDDKSYPYLAITMGDAVPRVLVTRNRNLPNARYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ T++ + + F +RSC+ SV++ RPCLL I +C+ PC G +S E + Sbjct: 133 PYSRAWAIRDTVDVMLKAFPMRSCSTSVYKRAQQTGRPCLLGDIGKCAAPCVGRVSLEDH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + F++G + + I NM QA +DYESA +RD++ A+ N + + Sbjct: 193 KSIALDFASFMAGNDSRMLNSIRENMTQAAAAQDYESAARYRDQIGAMETALAKNQIVLS 252 Query: 241 RM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D F + H++ A +Q G+ RG + + + + ++ L+ Y D Sbjct: 253 EDVDADFFGIAHDELAAAVQQFVVRGGRIRGVRGWVVDKELDVDLGGLVESVLQYAYDDA 312 Query: 298 PCPENILLSEEAEETSLLEISFFKQYG--YKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P P +IL+ E+++ LE ++ G + ++ V ++GEK + + NA + Sbjct: 313 PPPRDILVPAVPEDSAALEEWLSQRRGLGARTRLRVAQRGEKAALAQTVETNAKNALMLY 372 Query: 356 LSTEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 S L D + + P R+E +D SH+ G + V MVV + K Sbjct: 373 KSKRSGDFVARSQALADIQEALGMAEAPLRMECFDVSHLSGTNVVASMVVFEDGLPKKKH 432 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE-------------------NLNFH 452 YR+FN+ T DD + VL+RR + L + + Sbjct: 433 YRRFNI----AATTDDTDSIYQVLKRRLAYLAAGDAVPESSVPASEAPAHLMPDSGSDGD 488 Query: 453 PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV 512 F P ++I+DGG+ Q+SAAQ L++ V I + IAK + E + Sbjct: 489 VSTPTAKFAYPPQLLIVDGGQPQVSAAQRALEESGVSG-IQLAGIAKRLE-----EIWLP 542 Query: 513 KKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLL 572 ++L L+ IQRLRDEAHRFAIT R+RR K S L + G+GP R + LL Sbjct: 543 NSDFPVILPRNSDALFLIQRLRDEAHRFAITHQRQRRSKDVSSILATVPGLGPSRIKALL 602 Query: 573 QSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 Q FG+V + +S E + + GI A I Sbjct: 603 QHFGSVVRLRAASTEAIMEVPGIGASTADAIIQKL 637 >gi|206901843|ref|YP_002251194.1| excinuclease ABC, C subunit [Dictyoglomus thermophilum H-6-12] gi|226698348|sp|B5YF86|UVRC_DICT6 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|206740946|gb|ACI20004.1| excinuclease ABC, C subunit [Dictyoglomus thermophilum H-6-12] Length = 599 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 186/615 (30%), Positives = 308/615 (50%), Gaps = 33/615 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E PE GVY D +G+V+YVGKA NL+KR+ SY N+ + + +++ + NI F Sbjct: 13 KVENFPESTGVYIFYDHSGKVIYVGKAKNLRKRVLSYF--NDDSPKSNYILKKAKNIEFY 70 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 +T TE EAL+LE+ +IK+ +P N+ LRDDK +P + +T + P L R Y Sbjct: 71 ITDTETEALILESVLIKKYRPIMNVQLRDDKQYPMLKLTLYEEYPRLVLARRFEDDGARY 130 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEKY 180 +GP+ V +TI+ +++ F LRSC ++ + + RPCL + I C PC I+ E+Y Sbjct: 131 YGPYTQSGTVRETISMVKKIFNLRSCNWNLPKSKPKRPCLNYFIGNCKAPCQNYITKEEY 190 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 E V FL G + EK+ M + + ++E A RD++ L ++ + Sbjct: 191 WEIVKGVIDFLDGKYEEIIEKLYDQMQEYSKNLEFEKAAKIRDKIRLLQNLSEKQKIVSF 250 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D Y + A G+ F L +N +++ F+ Q+Y+ Sbjct: 251 NRENKDLIQFYVEDHKAKALVYLIREGKLIEKRIFNLTLPEICSNDELIESFVLQYYSRG 310 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 PE I++ E + F + + + E+ E+ L A + T + Sbjct: 311 EIPEVIVVPSPFSEEEVNLKEFLCKRKGSEVVLRTPENEEE---EKLLGMALKDLTIESI 367 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + L + + F L ++P IE YD S++ G AVG V K +YR++ + Sbjct: 368 KSEKVWLALSELQRIFNLQNLPVSIEGYDISNLQGREAVGSRVYFQNGYPEKTKYRRYKI 427 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 +D M++ V+ RR + ++ PD++++DGGKGQLS Sbjct: 428 KYTPELP-NDYLMLQEVIRRRLKNIEED----------------PLPDIMLIDGGKGQLS 470 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A V +L +E + I+++AK + E F + E ++L+ P L+ +Q++RDEA Sbjct: 471 AVLEVFNELKIEPKF-ILALAKEKE-----EIFVPGRSEPILLSYDSPALHLLQQVRDEA 524 Query: 538 HRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFA++ HRK R KK S LD+I G+G R ++LL++F T++ + ++S E L + GIS Sbjct: 525 HRFAVSYHRKLRSKKLMDSHLDKIPGVGEKRMKILLEAFSTLENLKKASLEDLKKVPGIS 584 Query: 597 KKIACKIYNHFHKNT 611 +KIA KIY +FH ++ Sbjct: 585 EKIAEKIYLYFHDSS 599 >gi|222151567|ref|YP_002560723.1| excinuclease ABC subunit C [Macrococcus caseolyticus JCSC5402] gi|222120692|dbj|BAH18027.1| excinuclease ABC subunit C [Macrococcus caseolyticus JCSC5402] Length = 598 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 175/621 (28%), Positives = 294/621 (47%), Gaps = 47/621 (7%) Query: 1 MSSEQ----MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQIN 56 + + +P PG Y M D +V+YVGKA NL+ R++SY + H + T ++ +I Sbjct: 10 IQIKNKLSVLPSEPGCYLMKDRNNQVIYVGKAKNLRNRVRSYFTGS-HDEKTTRLVMEIR 68 Query: 57 NIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST 116 + + VT TE+E+LLLE +IK+ PR+NILL+DDKS+P+I IT+ K P L R Sbjct: 69 DFEYIVTSTEIESLLLELTLIKKHYPRYNILLKDDKSYPFIKITN-EKHPRLLVTRTVKK 127 Query: 117 IQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176 G YFGP+ + A +T L R R C + CL + I +C GPC ++ Sbjct: 128 NSGKYFGPYPNAYAAHETKKLLDRIIPFRKCTHLP----DKLCLYYHIGQCLGPCVYDVD 183 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 +Y ++ FL+G + + E++ MN+ ++E A +RD + + + Sbjct: 184 QAEYQRYIQIVTNFLNGQDTTIVEELKEKMNEKAENLEFEEAKEYRDLIQHIESLMFKQK 243 Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 + + M D F +K C+Q F G + ++ + Sbjct: 244 MMTSDMTTRDIFGFNVDKGWMCVQVFFIRQGNLIERKVQMIPLMDDAKSHFYNFIGQFYQ 303 Query: 294 YTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS-- 351 + P + + + + + K + PK+G+K+++++ A+ NA + Sbjct: 304 LEENILPGEVHIPLGLDIEMVRSVVDTK-------VIQPKKGKKKEMVDLAVKNATIALA 356 Query: 352 --HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 E +++ + RIE +DNS+I G V M+ + K Sbjct: 357 NKFDIIERDESRTIKAIEELGNAMGIETP-IRIEAFDNSNIQGVDPVAAMITFVDGRPSK 415 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 YRK+ + V DD A MR V+ RR+++++K PD++I+ Sbjct: 416 RDYRKYKIKT--VSGPDDYASMREVVRRRYTRVLKEN--------------LPLPDLIIV 459 Query: 470 DGGKGQLSAAQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 DGGKG +++ Q V + +LN++ I + + K K E + + LN + Y Sbjct: 460 DGGKGHMTSVQDVLINELNLD--IPVAGLKKNDKHMTS-ELIYGDDFNIIPLNKKSQSFY 516 Query: 529 FIQRLRDEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 +QR++DE HRFAI+ HR RRK S LDEI G+GP RK+ L++ FG+VK I +S E Sbjct: 517 LLQRIQDEVHRFAISFHRNTRRKTGLSSQLDEIEGMGPKRKQKLMKHFGSVKRIKEASVE 576 Query: 588 TLASIEGISKKIACKIYNHFH 608 + + G+ +K+A +I + Sbjct: 577 EIRAA-GLPEKLAIEIKTKLN 596 >gi|251772244|gb|EES52814.1| excinuclease ABC, C subunit [Leptospirillum ferrodiazotrophum] Length = 622 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 189/612 (30%), Positives = 308/612 (50%), Gaps = 31/612 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVTC 64 +P+ PGVY M D G VLYVGK+ L+ R++SY + RI M ++ NI VT Sbjct: 18 LPDSPGVYLMKDDKGEVLYVGKSKCLKDRVRSYFQKTRPTSPRIRKMTERVANIETLVTR 77 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E++AL+LE +IK+ +PRFN+L RDDK++PY+ + P L R S FGP Sbjct: 78 SELDALILENTLIKKYRPRFNVLFRDDKTYPYLRFSWSEDFPRLTVTRRVSRSPDLTFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 +A+ A+ +T+ S+ R F L +C+ + + RPC+ +QI RC GPC G ++ E+Y Sbjct: 138 YANPSALRETLGSISRIFPLATCSLDLGKTIDRPCIEYQIGRCLGPCAGLVTREEYRRMA 197 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR--- 241 + FL G N +L+ + M ++E A + RL ++ I + Sbjct: 198 DGVRLFLEGKNSDLETLLHNEMVGHAKNLEFEKAARSKHRLESIRTILERQTVEFRIPSA 257 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP--C 299 +D ++ ++ A I+ G+ G ++ + + +L FL Q Y+ + Sbjct: 258 VDAVAVETDEGSAQIELLSVRNGRIAGRREVHIRNFDQDSPDDLLMAFLEQHYSQETTAL 317 Query: 300 PENILLSEEAEETSLLE-ISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 PE ILLS +L+ ++ G KV +T P++GEK+ ++E A NA S ++ + Sbjct: 318 PEEILLSHPLSHEALMNLEWMSEKKGGKVIVTHPRRGEKKTVVELAQNNARASLKERGKS 377 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + + L++ + L P I D S+ V +VV + K+ YR+F + Sbjct: 378 QSDLRQALEEVREMLGLEQAPGSIGCVDISNTGDSYPVASLVVFVDGLPEKSLYRRFRIR 437 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + + QDD M+ VL R F PD++++DGG+ QL A Sbjct: 438 YD--RGQDDFRMLAEVLSRHF-------------------DERPLPDLLLIDGGEPQLRA 476 Query: 479 AQGVLKKLNVENRIT-IISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDE 536 A L+++ R +I IAK R+ +E+ + L+L P + + R+RDE Sbjct: 477 ALAALQQIGKAPRPKQVIGIAKERSRTGHLERLVSPEFDSPLILPPHRPATHLLMRVRDE 536 Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 AHRFAIT HRK R++A +S L +I GIGP R++ LL +FG+V+ + + PE +A G+ Sbjct: 537 AHRFAITYHRKLREEALTHSRLLDIPGIGPSREKQLLLTFGSVEELKSAGPERIAREGGL 596 Query: 596 SKKIACKIYNHF 607 +A +I H Sbjct: 597 PASLARRIAEHL 608 >gi|222153201|ref|YP_002562378.1| excinuclease ABC subunit C [Streptococcus uberis 0140J] gi|254764947|sp|B9DUK9|UVRC_STRU0 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|222114014|emb|CAR42347.1| UvrABC system protein C [Streptococcus uberis 0140J] Length = 591 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 166/616 (26%), Positives = 290/616 (47%), Gaps = 41/616 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPDSPGCYLHKDKHGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEMLVSEIEDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + EALLLE N+I++ P++NI L+DDKS+P+I IT+ P L R G Y Sbjct: 67 VTGSNTEALLLEINLIQKNMPKYNIKLKDDKSYPFIKITN-EPFPRLLITRQIKKQDGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + L R F + C + + + C + + +C+ + + Sbjct: 126 FGPYPDSYTANEVKKLLDRIFPFKKCKNPI----NKVCFYYHLGQCNAHSICQTDKAYWD 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 V + K FL+G + + + M A+ ++E A +RD ++ ++ ++ + Sbjct: 182 GLVEDVKLFLTGKDDKIVTGLKEKMLAASQAMEFERAAEYRDLISGIATLRTKQRIMSKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ +E+ + Sbjct: 242 LQDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNEAEEDFLTYIGQFYLDQKHF 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ + + + ++ + + K P++GEK++++ A NA + Sbjct: 302 LPKEVFIPDTIDQDLVQAVVPTKIVK-------PQRGEKKQLVALATKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + + + + RIE +DNS+I G S V MVV + K YRK Sbjct: 355 LEKDLRKTKGAIDHLGQLLQIDRP-YRIEAFDNSNIQGTSPVAAMVVFKDGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + V DD A MR V+ RR+S+++K++ PD++I+DGG+G Sbjct: 414 FKIKT--VTGPDDYASMREVIFRRYSRVLKDK--------------LEMPDLIIIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+ + + +I I + K + E F E + L + + R++ Sbjct: 458 QVNVAKDVI-ENQLGLQIPIAGLQKNDRHQT-HELLFGDPLEVVELPRNSEEFFLLHRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+ LL+ F + IS++S + + S+ Sbjct: 516 DEVHRFAITFHRQVRSKNSFSSKLDGIEGLGPKRKQALLKHFKNMTAISQASVDEVRSL- 574 Query: 594 GISKKIACKIYNHFHK 609 GI +K+A + + F++ Sbjct: 575 GIPEKVAQALLDSFNE 590 >gi|328954575|ref|YP_004371909.1| UvrABC system protein C [Desulfobacca acetoxidans DSM 11109] gi|328454899|gb|AEB10728.1| UvrABC system protein C [Desulfobacca acetoxidans DSM 11109] Length = 650 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 187/619 (30%), Positives = 305/619 (49%), Gaps = 29/619 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P GVY VLYVGKA NL+ R++SY+ + + ++ I + F VT Sbjct: 17 HIPSGCGVYLFKGAREEVLYVGKAVNLKNRLQSYLR-DQPGLKTAALLEHIVLVDFLVTA 75 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EAL+LE N+IK+ +PR+NI LRDDK+F + + + ++P L R + YFGP Sbjct: 76 TEREALILERNLIKQHRPRYNINLRDDKNFLCLRLDIREEVPRLRLVRRFAPDGARYFGP 135 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + S AV + + +++ F LRSC D R RPCL +Q+ +C PC G +S Y + Sbjct: 136 YTSSAAVRELLKFMKKVFRLRSCKDRGIPKRIRPCLNYQMGQCLAPCCGLVSLADYHQAA 195 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241 EA FL G L++++ M+QA + YE A RDRLA L Sbjct: 196 QEALLFLQGQGRKLRQELTVKMHQAAAELRYEEAASLRDRLALLERTLAQQVVQNPSTKD 255 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D L + + G G+ +F K E + ++ + + D+ P+ Sbjct: 256 QDVLGLAREEETVMVVVLLVRRGMVTGSLPYFFKKVQEDDADLLEAFLKQYYSPDRFVPD 315 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 +L E+ +LE +Q G V++ P+QG +R++++ A NA + ++LS Sbjct: 316 EVLSPLNLEDKEVLEDLLKEQKGANVRLLFPRQGPRRQLLDLAQDNAMAALKRQLSLGPQ 375 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 + + ++ L P+R+ D SH+ G VG MVV +N K+ YR+F + Sbjct: 376 IDPAV-ELQERLKLGAPPRRLACLDISHLQGSQPVGAMVVFWDNQPDKSAYRRFRIRD-- 432 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 V QDD AM+ + R+F+ + PD++++DGG GQLS Sbjct: 433 VVGQDDPAMLAETVRRQFT-----------------AGDSALPDLLVIDGGLGQLSVVGK 475 Query: 482 VLKKLNVENRITIISIAK----GPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 L+ + + +R+ +I +AK R+ + + L L P L+ + RLRDEA Sbjct: 476 TLEDIGIADRLPVIGLAKAGILADGRAVRDRIYLPGRKNPLFLPPNSPALFLLMRLRDEA 535 Query: 538 HRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAI+ HRK+ R++A +S LD+I G+GP R++ L+Q F + + R+ L ++ + Sbjct: 536 HRFAISFHRKKAREQALHSVLDQIPGLGPKRRQRLMQRFPDIASLHRAPLAELINMPNLP 595 Query: 597 KKIACKIYNHFHKNTSHTP 615 + +A ++ + TP Sbjct: 596 RSVAEDLHRLLNNEGHATP 614 >gi|332519248|ref|ZP_08395715.1| excinuclease ABC, C subunit [Lacinutrix algicola 5H-3-7-4] gi|332045096|gb|EGI81289.1| excinuclease ABC, C subunit [Lacinutrix algicola 5H-3-7-4] Length = 600 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 183/626 (29%), Positives = 305/626 (48%), Gaps = 50/626 (7%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + +P PGVYQ + G ++YVGKA NL+KR+ SY + + ++ +I +I+ Sbjct: 8 ILLKTLPTSPGVYQYYNAEGTIIYVGKAKNLRKRVTSYFTKTHDNGKTRVLVKKIADIKH 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE +ALLLE N+IK+ KPR+N+LL+DDKS+P+I I K + P ++ R Sbjct: 68 IVVKTETDALLLENNLIKKHKPRYNVLLKDDKSYPWICI-KKERFPRVFPTRRVIKDGSE 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175 YFGP+ S+ V+ ++ ++ + LR+C +++ + + CL + + C GPC G Sbjct: 127 YFGPYTSMKTVKTLLDLIKGLYKLRTCNYKLSHENIASGKFKVCLEYHLGNCKGPCEGLE 186 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 + Y E + ++ L G + E+ M +E A ++++ L + Q + Sbjct: 187 TEASYQENITAIREILKGNFKDSLEQFKEQMQIFAENMQFEDAQKIKEKIEVLENYQAKS 246 Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 + +D FS+ +++ I +G + T +K + T+ ++L + + Sbjct: 247 TIINPKISNVDVFSIVSDESYGYINFLQISYGSIIRSHTLEIKKKLDETDKELLELAIIE 306 Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 + F G +K+++P+ G+KR+I++ ++ NA Sbjct: 307 IRERFNSKSKEIYV-----------PFKVNVGQDIKVSLPQLGDKRRILDLSIRNAKYYR 355 Query: 353 TQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 ++ + + I+ K L P+ IE +DNS+I G + V VV Sbjct: 356 MERFKQVKITDPDRHVKRIMAQMQKDLRLSEEPRHIECFDNSNIQGTNPVAACVVFKNGK 415 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 K YR FN+ V DD A M V+ RR+ +L++ EE L P + Sbjct: 416 PSKKDYRHFNIKT--VVGPDDFASMEEVVYRRYKRLLEEEEPL--------------PQL 459 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526 +I+DGGKGQLS+A L L + +I II IAK + E F+ L L+ + Sbjct: 460 IIIDGGKGQLSSALKSLDVLGLRGKIAIIGIAKRLE-----ELFYPNDPIPLYLDKKSET 514 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 L IQ+LR+EAHRF I HR +R K A + + I GIG LL+ F + K I+ + Sbjct: 515 LKIIQQLRNEAHRFGIEHHRNKRSKQALNTEMQSIPGIGEKTIVDLLKVFKSAKRIANAK 574 Query: 586 PETLASIEGISKKIACKIYNHFHKNT 611 + L ++ G+S+ A KIYN+FHKN Sbjct: 575 LDELENVVGVSR--AEKIYNYFHKND 598 >gi|163857568|ref|YP_001631866.1| excinuclease ABC subunit C [Bordetella petrii DSM 12804] gi|163261296|emb|CAP43598.1| excinuclease ABC subunit C [Bordetella petrii] Length = 579 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 205/596 (34%), Positives = 309/596 (51%), Gaps = 28/596 (4%) Query: 24 YVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLKPR 83 YVGKA +L+KR+ SY N + RI M++++ + TVT +E EALLLE N+IK L+PR Sbjct: 2 YVGKARDLKKRVSSYFQKNLASPRIAQMVAKVARVEVTVTRSEAEALLLENNLIKSLRPR 61 Query: 84 FNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFF 143 +NIL RDDKS+PY+LIT H+ P + +R ++ +G +FGPF + AV +TI LQ+ F Sbjct: 62 YNILFRDDKSYPYLLIT-GHEWPRIAYYRGATNKRGQFFGPFPNAWAVRETIQILQKVFR 120 Query: 144 LRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIA 203 LR+C D+VF +R+RPCLL QI RCS PC G I ++ Y V A +FL+G + +I Sbjct: 121 LRTCEDTVFANRSRPCLLHQIGRCSAPCVGAIGADDYARDVARAARFLNGEAREVMGEIE 180 Query: 204 RNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHNKNLACIQTCF 260 + M QA+ + +E A RD++ +L+ + + D ++ C+ Sbjct: 181 QRMLQASSELRFEEAAALRDQMGSLARVLHQQTMEDTSGEDTDIIAVAAAGGKTCVNLAM 240 Query: 261 FHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFF 320 G++ G FF Q+L F+ Q YTD P P ++ S + L+ + Sbjct: 241 VRAGRHLGDKPFFPVHVDGQDAPQVLEAFIAQHYTDNPLPPVLVCSHALPDAGLMALLAE 300 Query: 321 KQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPK 380 + ++ QG +R +EQA NA + + L+ + + L Sbjct: 301 QANARPARVLTRPQGVRRAWLEQAAKNADMALARALTESGARAARTLALAEALDLDTDEA 360 Query: 381 -----RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVL 435 RIE +D SH G + VV + QYR++N+ + DD A MR VL Sbjct: 361 ALDALRIECFDISHTAGEATQASCVVFLHHDMQPAQYRRYNI--AGITPGDDYAAMRQVL 418 Query: 436 ERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITII 495 RRF ++ E P +V++DGGKGQ+ A+ V +L ++ + T++ Sbjct: 419 TRRFGKVADGE--------------APMPGLVLIDGGKGQVEVARQVFAELGLDIQ-TLV 463 Query: 496 SIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY 554 +AKG R G+E G + L L I ++RDEAHRFAIT R RR KA Sbjct: 464 GVAKGEGRKVGLETLVFADGRPPVALGGESAALMLIAQVRDEAHRFAITGMRARRAKARN 523 Query: 555 -SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 S L+EI G+G R++ LL FG ++ +S E LAS++GIS +A +IY+ H Sbjct: 524 VSRLEEIEGVGARRRQRLLARFGGFSGVASASIEDLASVDGISHDLAERIYDALHN 579 >gi|160871757|ref|ZP_02061889.1| excinuclease ABC, C subunit [Rickettsiella grylli] gi|159120556|gb|EDP45894.1| excinuclease ABC, C subunit [Rickettsiella grylli] Length = 608 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 233/611 (38%), Positives = 342/611 (55%), Gaps = 26/611 (4%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 + + PGVY L+ G+VLYVGKA +L+KRI SY + RI ++ Q+ I T T T Sbjct: 15 ISQSPGVYLFLNAEGQVLYVGKARHLKKRIGSYFRA-QQNRRIACLMRQVVTIETTSTET 73 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E +ALLLE+N+IK LKPR+NILLRDDKS+PYI+++ + P L +R S + YFGPF Sbjct: 74 ENQALLLESNLIKELKPRYNILLRDDKSYPYIILSRHQRYPRLAFYRGSRCKEYRYFGPF 133 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 S+ AV +T+N LQ+ F LRSC DS FR+RTRPCL +QIKRCS PC I+ E Y V+ Sbjct: 134 PSIAAVRETLNLLQKLFRLRSCKDSFFRNRTRPCLQYQIKRCSAPCVSFITPEHYQRDVN 193 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCF 245 A+ FL G N + + +A+ M A DYE+A RD+++AL IQ + D Sbjct: 194 NARLFLQGKNQTIIDDMAQQMECAARAFDYETAARLRDQISALREIQQKQVITTGQGDLD 253 Query: 246 SLYHNKNLACI--QTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP----C 299 + + A G+ G T+F + + +LS F+ QFY Sbjct: 254 IIGLAEQNAVYGLYVMNVRHGRLLGGKTYFPEVPFKQAADDVLSAFISQFYLQSEVSHFI 313 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P I+L+ + E + + ++ GYK+++ GEK++ A NA ++ + LS + Sbjct: 314 PPQIILALKIAENDWVSAALSERAGYKIRLFSRPTGEKKQWQTLADKNAQQALVRHLSNK 373 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 ++ L+ L ++P+R+E +D SH G + V VV + G K YR+FN+ Sbjct: 374 LAFYKQLEYLQTALQLDNLPQRLECFDVSHTQGDATVASCVVFDQEGPRKMDYRRFNI-- 431 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 ++ DD A +R L RR+ +L +EE L PD++++DGGKGQL A Sbjct: 432 ENITPGDDYAALRQALMRRYKRLKNDEEKL--------------PDLLLIDGGKGQLKQA 477 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEAH 538 + VL++L + N I +I +AKGP R AG+E+ ++ +A+ L L + LRDEAH Sbjct: 478 EQVLEELQI-NGILVIGVAKGPGRRAGLERLYLSDHLQAIHLPEDSFALRALLTLRDEAH 536 Query: 539 RFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAI HR R KK S L++I GIG R+R LL+ FG + + +S E LA + GISK Sbjct: 537 RFAIIGHRGLRSKKQRSSILEDIPGIGAKRRRELLRQFGGLHALKNASAEDLAKVPGISK 596 Query: 598 KIACKIYNHFH 608 ++A +IY Sbjct: 597 RLAEQIYFALK 607 >gi|52424992|ref|YP_088129.1| excinuclease ABC subunit C [Mannheimia succiniciproducens MBEL55E] gi|81387223|sp|Q65U16|UVRC_MANSM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|52307044|gb|AAU37544.1| UvrC protein [Mannheimia succiniciproducens MBEL55E] Length = 608 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 206/617 (33%), Positives = 332/617 (53%), Gaps = 32/617 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY+M D V+YVGKA +L+KR+ SY +N + + +++ I I T+T Sbjct: 10 NVTHDPGVYRMFDDKDTVIYVGKAKDLKKRLSSYFRANLSSKKTEALVASICRIETTITT 69 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N IK +PR+N+LLRDDKS+PYIL+T K + P + HR S + G YFGP Sbjct: 70 SETEALLLEHNYIKTFQPRYNVLLRDDKSYPYILLT-KERHPRITSHRGSKKVTGEYFGP 128 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183 + AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RC PC +S E+Y + Sbjct: 129 YPHAGAVRETLSLLQKLFPIRQCENSVYANRSRPCLQYQIGRCLAPCVSGYVSDEEYNQQ 188 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240 V A+ FL G + + + + M +A+ ++E A +RD++ A+ + + Sbjct: 189 VGYARLFLQGKDQQVLDHLIGKMERASRALNFEEAARYRDQIQAVRSVIEKQFVSNERLD 248 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296 MD ++ + +AC+ F G+ G ++F K ++ +++ F+ QFY Sbjct: 249 DMDIIAIAYKLGIACVHVLFIRQGKILGNRSYFPKVPENTSLSELTETFVGQFYLQAHQG 308 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 + P +I++ + EE + LE Q G KV I +G K K + A +NA + +L Sbjct: 309 RTIPNSIIVDRKLEEKAELESLLTDQAGRKVSIQDNIKGNKSKYLHLAQMNAQAALALQL 368 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 K+ + + R+E +D SH MG + VV E G +K+ YR+FN Sbjct: 369 KQSSLIHERYKELQQLLGIE-KIHRMECFDISHTMGQQTIASCVVFNEEGPLKSDYRRFN 427 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + DD A M L++R+ + ++ E+ PD++ +DGGKGQL Sbjct: 428 IEG--ITGGDDYAAMEQALKKRYDKDLELEK---------------IPDIIFIDGGKGQL 470 Query: 477 SAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQR 532 + A V +L V +NR +I +AKG R G+E + K E + L L+ IQ Sbjct: 471 NRALKVFHELQVKWDKNRPHLIGVAKGVDRKVGLETLIISKQEREINLPADSLALHLIQH 530 Query: 533 LRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+H AI+ HRK+R+KA S L+ I G+G R++ LL+ G ++ + ++ + +AS Sbjct: 531 IRDESHNHAISGHRKKRQKAFTQSGLETIEGVGAKRRQALLKYLGGMQGVKNATQDEIAS 590 Query: 592 IEGISKKIACKIYNHFH 608 + GIS +A KI+ H Sbjct: 591 VPGISVALAEKIFEALH 607 >gi|315655489|ref|ZP_07908388.1| UvrABC system protein C [Mobiluncus curtisii ATCC 51333] gi|315490144|gb|EFU79770.1| UvrABC system protein C [Mobiluncus curtisii ATCC 51333] Length = 693 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 185/690 (26%), Positives = 308/690 (44%), Gaps = 85/690 (12%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + ++P PGVY+ D RV+YVGKA NL+ R+ SY R M++ ++ + Sbjct: 8 KASEIPTQPGVYRWRDERNRVIYVGKAKNLRNRLTSYFVDPARLHPRTAKMVATAASVSW 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V +EVEAL LE IK P+FN++ +DDKS+PY +T + P + R + Sbjct: 68 VVVGSEVEALTLEYTWIKEHDPKFNVMFKDDKSYPYFAVTMNQEYPRMGVLRTAHQRGVR 127 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISS 177 YFGP+ +V A+ +T++ LQ F +R+C+D VF R CLL I RC+ PC G +S+ Sbjct: 128 YFGPYTAVWAIRQTLDLLQTVFPVRTCSDGVFARAQAANRACLLGYIGRCAAPCIGRVSA 187 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 ++ E + F+SG + +I M + +E A RD+L AL + N + Sbjct: 188 AQHRELAEKVCDFMSGRDAGFLREIETAMWEDAQAYRFEEAARKRDQLEALRKVLEKNAA 247 Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D F+L ++ +Q + G+ RG + + + +++ L Q Y Sbjct: 248 VLSDDTDADLFALEADELQVSVQVFYVRAGRIRGQRGWVSAREEDLDEPSLMARALEQIY 307 Query: 295 TDKP------------------------------CPENILLSEEAEETSLLEISFFKQYG 324 + P+ IL+S + +L+ G Sbjct: 308 GEAAADFVREGGVARLRRVGPSSANDTAHFDTSVIPKEILVSVSPADVGMLQRWLGALRG 367 Query: 325 YKVKITVPKQGEKRKIIEQALINA----HRSHTQKLSTEISHQMILKDFTKKFALPHIPK 380 +V I VP++G KR+ + + +NA T++ + L + + + Sbjct: 368 SQVSIRVPQRGAKREALSRVQLNAVEGLRLYKTRRARDLTQRNLALNELGRLLEIDPPL- 426 Query: 381 RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT-QDDCAMMRMVLERRF 439 RIE YD SH G +G MVV + K+ YRKF++ D DD M VL RRF Sbjct: 427 RIECYDISHTQGTFQMGSMVVFEDGAPRKDAYRKFSIRGEDGTGTPDDTTAMNEVLRRRF 486 Query: 440 SQLIKNEE-----------------------------------NLNFHPKKQEYSFPSWP 464 +LI+ E +++ F P Sbjct: 487 ERLIQEENGQSSAQSEPNAATTARGTDLVENKNPFPQTTHSVAPPPLGTEREPRRFSYRP 546 Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524 D+V++DG Q+ AA+ + ++ V + I ++ +AK + E + V ++ Sbjct: 547 DLVVVDGALPQVHAARAAMDEVGVWD-IPVVGLAKRLE-----EVWRVDDDFPVIFPRTS 600 Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583 LY +Q LRDE+HRFAI+ HR++R + S LD G+GP +++ LL+ FG+VK + Sbjct: 601 EALYLLQYLRDESHRFAISAHRQKRARAMTRSILDAAPGVGPAKQKALLKHFGSVKRLRE 660 Query: 584 SSPETLASIEGISKKIACKIYNHFHKNTSH 613 +S +A + G K A + + + + Sbjct: 661 ASAAEIAEVPGFGLKTAENLVAFLNNSGNS 690 >gi|304389347|ref|ZP_07371312.1| excision endonuclease subunit UvrC [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327465|gb|EFL94698.1| excision endonuclease subunit UvrC [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 693 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 186/690 (26%), Positives = 308/690 (44%), Gaps = 85/690 (12%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + ++P PGVY+ D RV+YVGKA NL+ R+ SY R M++ ++ + Sbjct: 8 KASEIPTQPGVYRWRDERNRVIYVGKAKNLRNRLTSYFVDPARLHPRTAKMVATAASVSW 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V +EVEAL LE IK P+FN++ +DDKS+PY +T + P + R + Sbjct: 68 VVVGSEVEALTLEYTWIKEHDPKFNVMFKDDKSYPYFAVTMNQEYPRMGVLRTAHQRGVR 127 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISS 177 YFGP+ +V A+ +T++ LQ F +R+C+D VF R CLL I RC+ PC G +S+ Sbjct: 128 YFGPYTAVWAIRQTLDLLQTVFPVRTCSDGVFARAQAANRACLLGYIGRCAAPCIGRVSA 187 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 ++ E + F+SG + +I M + +E A RD+L AL + N + Sbjct: 188 AQHRELAEKVCDFMSGRDAGFLREIETAMWEDAQAYRFEEAARKRDQLEALRKVLEKNAA 247 Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D F+L ++ +Q + G+ RG + + + +++ L Q Y Sbjct: 248 VLSDDTDADLFALEADELQVSVQVFYVRAGRIRGQRGWVSAREEDLDEPSLMARALEQIY 307 Query: 295 TDKP------------------------------CPENILLSEEAEETSLLEISFFKQYG 324 + P+ IL+S + +L+ G Sbjct: 308 GEAAADFAHEGGVARPRRVGPSSANDTAHFDTSVIPKEILVSVSPADVGMLQRWLGALRG 367 Query: 325 YKVKITVPKQGEKRKIIEQALINA----HRSHTQKLSTEISHQMILKDFTKKFALPHIPK 380 +V I VP++G KR+ + + +NA T++ + L + + + Sbjct: 368 SQVSIRVPQRGAKREALSRVQLNAVEGLRLYKTRRARDLTQRNLALNELGRLLEIDPPL- 426 Query: 381 RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT-QDDCAMMRMVLERRF 439 RIE YD SH G +G MVV + K+ YRKF++ D DD M VL RRF Sbjct: 427 RIECYDISHTQGTFQMGSMVVFEDGAPRKDAYRKFSIRGEDGTGTPDDTTAMNEVLRRRF 486 Query: 440 SQLIKNEEN-----------------------------------LNFHPKKQEYSFPSWP 464 +LI+ E +++ F P Sbjct: 487 ERLIQEENGQSSAQSEPNAATTARGTDLVETKHPSPQTTPSVALPPLGTEREPRRFSYRP 546 Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524 D+V++DG Q+ AA+ + ++ V + I +I +AK + E + V ++ Sbjct: 547 DLVVVDGALPQVHAARAAMDEVGVWD-IPVIGLAKRLE-----EVWRVDDDFPVIFPRTS 600 Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583 LY +Q LRDE+HRFAI+ HR++R + S LD G+GP +++ LL+ FG+VK + Sbjct: 601 EALYLLQYLRDESHRFAISAHRQKRARAMTRSILDAAPGVGPAKQKALLRHFGSVKRLRE 660 Query: 584 SSPETLASIEGISKKIACKIYNHFHKNTSH 613 +S +A + G K A + + + + Sbjct: 661 ASAAEIAEVPGFGLKTAENLVAFLNNSGNS 690 >gi|260434379|ref|ZP_05788349.1| excinuclease ABC, C subunit [Synechococcus sp. WH 8109] gi|260412253|gb|EEX05549.1| excinuclease ABC, C subunit [Synechococcus sp. WH 8109] Length = 661 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 192/633 (30%), Positives = 304/633 (48%), Gaps = 29/633 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFT 61 +++P PG Y M D R+LYVGK+ L+ R++SY S++ + RI M Q+ I F Sbjct: 20 LKEIPAEPGCYLMRDGDDRILYVGKSKALRSRVRSYFRSHHDLSPRIRLMTRQVCEIEFI 79 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ--G 119 VT +E EAL+LE+N+IK L+P FN+LL+DDK +PY+ IT P ++ R Sbjct: 80 VTDSEAEALVLESNLIKNLQPHFNVLLKDDKKYPYLCITWSEAYPRIFITRRRRFRSPLD 139 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++GP+ V + +T+ ++R F LR ++ RT CL F I RC G C +ISSE Sbjct: 140 RFYGPYVDVGLLRRTLFLVKRVFPLRQRPRPMYPDRT--CLNFSIGRCPGVCQEKISSED 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + + G + L++ + M + + DYESA RD+L L + Sbjct: 198 YHRTLRKVAMVFQGRSDELQQLLQEQMERYAERMDYESAARVRDQLQGLDQLTADQKMSL 257 Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D +L ++ LA +Q G+ G + S IL + + Y+ Sbjct: 258 PDSSVSRDVLALAFDERLAAVQLFQMRAGKLVGRLGYTAD-ASGLEPGLILQRVIEEHYS 316 Query: 296 DKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 P +L+ + L+E +Q +V+I P++ +K +IE NA Sbjct: 317 QVDSVEVPPKLLVQHALPQQKLMEDWLSEQRERRVQIHCPQRQQKADLIELVQRNAEFEL 376 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + + +D + LP P+RIE YD SHI G AV VV + K Y Sbjct: 377 LRAKQGQEKQSLATEDLAQLLELPTPPRRIEGYDISHIQGSDAVASQVVFIDGLPAKQHY 436 Query: 413 RKFNLHPNDV---KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK-------QEYSFPS 462 RK+ + + + + D AM ++ R E L+ + Q Sbjct: 437 RKYKIRSSSIQAGHSDDFMAMAEIMRRRFRRWARAKAEGLDVGALRHKGGSALQTDGLND 496 Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522 WPDVV++DGGKGQLSA L++L++ + + S+AK + E F + + L Sbjct: 497 WPDVVMIDGGKGQLSAVMEALRELDLHEDLNVCSLAKQRE-----EVFLPGESQPLESEP 551 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMI 581 + ++RLRDEAHRFA++ HR++R + S L +I G+GP R + LL F ++ I Sbjct: 552 DQLGVVLLRRLRDEAHRFAVSFHRQQRGERMKRSRLSDIPGVGPKRVKDLLAHFHSIDAI 611 Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +S ETL+ G+ +A I++ FH + T Sbjct: 612 QLASVETLSKAPGVGPALARDIHDFFHPSDDGT 644 >gi|42523762|ref|NP_969142.1| excinuclease ABC subunit C [Bdellovibrio bacteriovorus HD100] gi|81617029|sp|Q6MKS2|UVRC_BDEBA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|39575969|emb|CAE80135.1| excinuclease ABC subunit C [Bdellovibrio bacteriovorus HD100] Length = 630 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 200/628 (31%), Positives = 314/628 (50%), Gaps = 41/628 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 ++ P GVY M + A +++Y+GKA NL+ R++SY + S +H+ + ++S I + + Sbjct: 12 KVKEFPTQSGVYLMKNTADKIIYIGKAKNLRNRVRSYFNDSKDHSPKTRLLVSNICEVEY 71 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T TEVEA LLEA++IK+ +P++NI LRDDK++PYI + + P LY R Sbjct: 72 ILTKTEVEAFLLEASLIKKHRPKYNIRLRDDKAYPYIRFSWGDQAPRLYLARKVKKDGSL 131 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGP+ S AV TI L RTF +R C D+VF+ RTRPC+ +QI RC+ PC I+ E Y Sbjct: 132 YFGPYTSGLAVHGTIKFLNRTFKIRDCTDAVFKSRTRPCMTYQIGRCTAPCVKYITMEDY 191 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 V AK FL G N + + + M A +E +E A RD + A+ I I + Sbjct: 192 RNEVEGAKLFLKGQNKKVIKSMTEKMMGAADEEKFEVAARLRDSIEAIKAILQKQAVIND 251 Query: 241 ----RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT----DSESTNAQILSYFLRQ 292 D Y ++ I+T G+ GT +L D+ + L FL Q Sbjct: 252 TSEKDQDALGYYGDERGCLIETVHIRAGRVIGTRPHYLPHFDPNDAVEDPREWLVDFLNQ 311 Query: 293 FYTDKPCPENILLSEEA--EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR 350 +Y D P+ +LL + + T L+E ++ G K + R +++ A NA Sbjct: 312 YYEDNFIPDEVLLPLDIGNDLTKLMEEVLKERSGSKTTVRFATDERGRNLVDMAHENAKS 371 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + +S L++ ++F LP P+RIE YD S G V VV + K Sbjct: 372 HFLKYVSKSEEKLRGLEEIKERFNLPERPRRIECYDISTFQGAETVASQVVFEDGVPAKE 431 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YR++ + V+ +D A M VL RRF ++ P ++++D Sbjct: 432 HYRRYKIKT--VQGINDFASMYEVLSRRFKHTEYDD-----------------PQLIVID 472 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAK--------GPKRSAGMEKFF-VKKGEALVLN 521 GGKGQLS A +L+++ I ++ +AK + + E+FF + ++ Sbjct: 473 GGKGQLSQAMKILEEIG-RKDIPVVGLAKARTESDFQKQEVESTEERFFLPGRSNPVIFK 531 Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580 LY + +RDEAHRFAIT HRK R + S LD + G+G RK++LL F ++ Sbjct: 532 HNAEALYILSGIRDEAHRFAITYHRKLREGTSLESELDYVVGLGEKRKKVLLTQFNSIDE 591 Query: 581 ISRSSPETLASIEGISKKIACKIYNHFH 608 I + PE +A ++G ++ +A +I + Sbjct: 592 IKMADPEEIAKLKGFNRVLAERILLQLN 619 >gi|197120322|ref|YP_002140749.1| excinuclease ABC subunit C [Geobacter bemidjiensis Bem] gi|226698351|sp|B5EG40|UVRC_GEOBB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|197089682|gb|ACH40953.1| excinuclease ABC, C subunit [Geobacter bemidjiensis Bem] Length = 623 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 205/621 (33%), Positives = 307/621 (49%), Gaps = 35/621 (5%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTV 62 E P PGVY M V+YVGKA NL+KR++SY + I M+ ++++ + V Sbjct: 8 ENFPPSPGVYLMKSADDTVIYVGKARNLKKRVRSYAGDTRDSRIHIRFMVQLVHSVDYLV 67 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EAL+LE +IK+ +P++NI LRDDK++ + + K + P L R + YF Sbjct: 68 TDTEKEALILENTLIKQHRPKYNINLRDDKTYFSLRMDMKEQFPRLSIVRKIPSDGARYF 127 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+AS A ++ + L + F LR + R RPCL QIK+CS PC G IS+ +Y Sbjct: 128 GPYASATAAKEVLKQLYKMFPLRHYPLATCMARKRPCLYHQIKQCSAPCCGLISAAEYAA 187 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRD--RLAALSHIQNHNDSIYN 240 H A FL G N + MN A + YE A +RD R ++ + + + Sbjct: 188 LAHGAALFLEGKNTEVARLYRSKMNLAAEQMRYEDAARYRDLLRAIEVTVERQKMVAQSD 247 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DKPC 299 D F L+ + I G G +F + E+ + L+ FL ++Y D P Sbjct: 248 DSDVFGLHREADRMQIALLHIRGGTLTGGRSFLFDWELETE--EGLASFLNEYYDLDAPI 305 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P +L+ E + LE ++ G KV I VP++G K ++++ A NA + ++L+ E Sbjct: 306 PPQVLIPVPIAEPAALEELLSEKAGKKVTIAVPQRGPKLEMVKLAGKNAETAAQERLARE 365 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 S +L + +K LPH P+RIE YD S+I G AVG VV + K+ YR++ + Sbjct: 366 SSSATLLTELAEKLNLPHPPRRIECYDISNIQGEMAVGSRVVFIDGRADKSLYRRYRIKG 425 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 V DD AMMR VL RRF E+ PD++++DGG GQL Sbjct: 426 --VLQSDDFAMMREVLSRRFKAESSEEK----------------PDLIVVDGGLGQLGVL 467 Query: 480 QGVLKKLNVENRITIISIAK-GPKRSAGMEK--------FFVKKGEALVLNMRDPILYFI 530 VL +L V + +AK R E+ F + A+ L L + Sbjct: 468 NAVLDELEVTG-VEAAGLAKSRVARDMESEEIERSDERVFRPGRKNAIALRQSSAPLLLL 526 Query: 531 QRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R+RDEAHRFA+T H+ R K S LD + GIG RK+ LL+ FG++K + ++ E L Sbjct: 527 VRIRDEAHRFAVTYHKDVRSKVLTGSELDGVAGIGEKRKKALLKHFGSLKRVKEATLEEL 586 Query: 590 ASIEGISKKIACKIYNHFHKN 610 G+++ A + H + Sbjct: 587 KGAPGMTESAAKALVERLHGS 607 >gi|294507592|ref|YP_003571650.1| UvrABC system protein C [Salinibacter ruber M8] gi|294343920|emb|CBH24698.1| UvrABC system protein C [Salinibacter ruber M8] Length = 664 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 187/637 (29%), Positives = 311/637 (48%), Gaps = 45/637 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRF 60 + +P PGVY+ LD VLYVGKA NL+ R+++Y S+ RI M+ + ++ Sbjct: 46 KLDALPTDPGVYKFLDDEESVLYVGKAKNLRNRVRTYFQSSRQRDGRIEVMVQKAVDVDI 105 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT TE EAL+LE N IK L+PR+N+ LRDDK++PYI I + P ++K R Sbjct: 106 IVTDTEAEALILENNQIKELQPRYNVNLRDDKTYPYICI-KNERFPRVFKTRTVKQDGSE 164 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175 YFGP+A V + +++++ F LR+C+ + + + CL I C PC G+ Sbjct: 165 YFGPYADVSKMNAMMDAIRSVFQLRTCSLDLTEEKIEAGKYDVCLQHHIDNCKAPCVGKQ 224 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 S YME + + KK L+G L + + M + + ++E A RD++ AL Sbjct: 225 SEADYMETIEQVKKLLNGQTQELMDLLKDEMQRQSDAHNFEEAARLRDQVKALKDYSQQQ 284 Query: 236 DS---IYNRMDCFSLY--HNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290 + D F+L+ ++++ C G+ G FL++ +E ++A+++ + Sbjct: 285 KVVSQDFADRDVFALHVERDEDIGCGVLFQVREGKMIGKRHKFLRSVAERSDAELILSLV 344 Query: 291 RQFYTDKPC-PENILLSEEAEETSLLEISFFK-----QYGYKVKITVPKQGEKRKIIEQA 344 +Y + PE +LLS + + + + + G++V I VP++GEK ++ A Sbjct: 345 ENYYAEANFYPEEVLLSHDPNDHPAQDTHALEELLRREQGHQVPIKVPQRGEKASLVRMA 404 Query: 345 LINAHRSHTQKLSTEISHQM-----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCM 399 NA + + ++ + +K + + P+R++ D SH G V Sbjct: 405 TSNAKLQVGEWKTQQMKRERNRIPESIKALGEALNMEAAPRRVDGIDVSHHGGKETVASC 464 Query: 400 VVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS 459 VV + K+ YR + + + T DD MR E + ++ Sbjct: 465 VVFTDATPRKSDYRTYKIRSTEEGTPDDYQAMR--------------EVVRRRYRRMVEE 510 Query: 460 FPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALV 519 WPD+V++DGGKGQLS+A +LK++ +R +I +AK + E + E + Sbjct: 511 DGPWPDLVVIDGGKGQLSSAVEMLKEVGAFDRFPVIGLAKRLE-----EVYRPGDSEPVF 565 Query: 520 LNMRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTV 578 L P L +Q++RDEAHRFA+T RKRR KK S L +I+GIGP + LL FG+ Sbjct: 566 LAKDSPALQLLQKVRDEAHRFAVTYQRKRRKKKTLQSELLDIHGIGPKTAKKLLGEFGSA 625 Query: 579 KMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615 + + E LA + G A I +++ + + P Sbjct: 626 AKVKEADEEALAEVVG--PAKAETITDYYDETEAPAP 660 >gi|322384564|ref|ZP_08058244.1| excinuclease ABC subunit C-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150619|gb|EFX44096.1| excinuclease ABC subunit C-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 659 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 183/664 (27%), Positives = 300/664 (45%), Gaps = 83/664 (12%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M + G ++YVGKA L+ R++SY + H + ++S+I + + VT + Sbjct: 24 LPDQPGCYLMKNKDGVIIYVGKAKVLKNRVRSYFTGS-HDGKTQRLVSEIRDFEYIVTSS 82 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ +PR+N+LL+DDKSFPYI IT + P L R +G YFGP+ Sbjct: 83 NIEALILECNLIKKHRPRYNVLLKDDKSFPYIKIT-HEEHPRLEVTRKIVKDRGKYFGPY 141 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + A ++T L R + LR C R CL + + +C PC +++ E+ E + Sbjct: 142 PNAYAAQETKKLLDRLYPLRKCKHMP----DRVCLYYHMGQCLAPCVYDVTKEQNEEMIQ 197 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 +FL+GG+ +K + M+ A + ++E A RD++A + + Sbjct: 198 GITRFLNGGHEEIKRDLTAKMHAAAEELNFERAKELRDQIAYIEAVMEKQKITMADHVDR 257 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC--- 299 D F +K C+Q + G+ + + ++ Q Y+D P Sbjct: 258 DVFGYSTDKGWMCVQILYMRQGKLIERHVSMFPFYGDE--YEDFITYVTQAYSDNPALPK 315 Query: 300 -----------------------------------------PENILLSEEAEETSLLEIS 318 P + + Sbjct: 316 EIFLPLRNKAGEQKAGESHEISGKDSFIEALQKEDEFQKEHPREQEGPVLPSDAEEGMVK 375 Query: 319 FFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLSTEISHQMILKDFTKKFA 374 + V++ P++G K++++E A NA E +++ + Sbjct: 376 EALESWLGVRVHFPQRGLKKQMVEMAANNARVALEEKFRLIERDEKRTIKAVENLGEWIG 435 Query: 375 LPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMV 434 +RIE +DNS+I G V MVV + + +YRKF + V+ DD + MR V Sbjct: 436 -TGYVRRIEAFDNSNIQGADPVAAMVVFIDGKPERKEYRKFKIKT--VQGPDDYSSMREV 492 Query: 435 LERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK-KLNVENRIT 493 + RR+ +++K+ PD++I+DGGKGQ+SAA +L+ +L + I Sbjct: 493 IRRRYERVLKDG--------------LEMPDLIIVDGGKGQISAAIDILENELGLY--IP 536 Query: 494 IISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA 553 + ++K K E + + Y + R++DE HRFAIT HR+RR K+ Sbjct: 537 VCGLSKDIKHKTAQ-LLMGDPAEVVPIPRDSQEFYLLNRIQDEVHRFAITFHRERRAKSM 595 Query: 554 -YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 S LD I GIG R++LLL+ FG+VK I + E I GI K+A +I + N Sbjct: 596 VQSQLDAIPGIGEKRRKLLLKHFGSVKKIKEAKVEDFRPI-GIGDKLAAQILTSLNGNM- 653 Query: 613 HTPT 616 TPT Sbjct: 654 DTPT 657 >gi|228477681|ref|ZP_04062310.1| excinuclease ABC subunit C [Streptococcus salivarius SK126] gi|228250570|gb|EEK09781.1| excinuclease ABC subunit C [Streptococcus salivarius SK126] Length = 594 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 174/617 (28%), Positives = 297/617 (48%), Gaps = 39/617 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPNNPGCYLHKDKFGNIIYVGKAKNLKNRVRSYFRGSHDT-KTELLVSEIADFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+I+ P+FNI L+DDKS+P+I IT K P L R G Y Sbjct: 67 VTESNIEALLLEINLIQENMPKFNIRLKDDKSYPFIKIT-KELYPRLLITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ A + L R F + C + + C + I +C+ + + + Sbjct: 126 FGPYPDSGAANEIKKLLDRIFPFKKCKNP----ANKVCFYYHIGQCNAHTICHTTEDYWQ 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---I 238 V + K FL+G + + ++ M + + ++E A +RD + A+S ++ Sbjct: 182 GLVEDVKNFLNGHDDKIVNQLKAKMKDMSDQMEFERAAEYRDLIEAVSTLRTKQRVIRQD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ +++ + + Sbjct: 242 MQDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDAEEDFLTYMGQFYLDSRHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P I + + ++ S+ + + VK+ P++GEK++++ A NA + Sbjct: 302 KPREIFIPGDIDQDSVEALVGDE-----VKVFKPQRGEKKQLVNLATKNARVSLTQKFDL 356 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 Q +++ K +P RIE +DNS+IMG S V MVV K +YRK Sbjct: 357 LEKDLAKTQGAIENLGKLMGIPTPV-RIESFDNSNIMGTSPVSAMVVFENGKPNKKEYRK 415 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V+ DD A MR V+ RR+S++ ++ + PD++I+DGG+G Sbjct: 416 YKIKT--VEGPDDYASMREVIRRRYSRVKRDG--------------LTPPDLIIMDGGQG 459 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ VL+K + I + + K K E F + L + + + R++ Sbjct: 460 QVNVAKDVLRK-ELNLSIPVAGLQKNDKHQT-NELLFGDPLRVIDLPRQSEEFFLLHRIQ 517 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD + G+GP RK+ LL+ F ++ I ++S E + ++ Sbjct: 518 DEVHRFAITFHRQVRSKNSFSSKLDGVEGLGPKRKQKLLKHFKSMTAIQKASAEDIQAL- 576 Query: 594 GISKKIACKIYNHFHKN 610 GI +K+A + + + N Sbjct: 577 GIPEKVAEALLDKLNDN 593 >gi|325954157|ref|YP_004237817.1| UvrABC system protein C [Weeksella virosa DSM 16922] gi|323436775|gb|ADX67239.1| UvrABC system protein C [Weeksella virosa DSM 16922] Length = 603 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 190/627 (30%), Positives = 306/627 (48%), Gaps = 49/627 (7%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + +PE PGVYQ + G +LYVGKA NL+KR+ SY + + + RI ++ +I+ I Sbjct: 7 IQLSALPETPGVYQYYNKKGNLLYVGKAKNLKKRVNSYFNKTHDSGRIRLLVKKIDRIET 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TE +ALLLE +IK+ KPR+NI+LRDDK++P+I I K P + R Sbjct: 67 INVATEYDALLLENTLIKKNKPRYNIMLRDDKTYPWICI-KKEPFPRIISTRKLVKDGSE 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175 YFGP++S+ + + ++ +F+R+C+ D++ + + + CL + I RC GPC G Sbjct: 126 YFGPYSSIRVMRTLLELIRELYFIRTCSYDLSEDNIEKGKYKVCLEYHIDRCKGPCEGLQ 185 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 + Y + + + G K + M + +E A +++L ALS Q + Sbjct: 186 TEADYDMQIQAIRNIIRGDYAEGKRYLTDLMEKFAADLQFEQAQNIKEKLEALSSYQTKS 245 Query: 236 DSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 ++ R+D FS+ + + A I H G + T K E T+ ++L+ + + Sbjct: 246 TVVHPSITRVDVFSIISDADYAYINFLRIHNGAIIQSHTEEWKKKLEETDEELLTTAIIE 305 Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 F + + + VKITVPK G+K+ I++ + NA Sbjct: 306 FGER----------FDLQSKEIYVPFALDLEIPNVKITVPKIGDKKHIVDLSERNAKLYR 355 Query: 353 TQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 ++L + I+K L P+ IE +DNS+I G + V VV + Sbjct: 356 LEQLKRTKLVDPDRHTNRIMKQMKVDLRLLREPRHIEGFDNSNIQGTNPVSACVVFRDGK 415 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 K YR FN+ V +D A M V+ RR+S+L+ E L PD+ Sbjct: 416 PSKKDYRIFNVET--VDGPNDFATMEEVIYRRYSRLLNEGEAL--------------PDL 459 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526 +++DGGKGQLS+A + +L + ++++I IAK + E F+ L L+ Sbjct: 460 ILIDGGKGQLSSALKSIDRLGLRGKVSVIGIAKRLE-----EIFYPNDPYPLYLDKTSET 514 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 L +Q++RDEAHRF ++ HR RR K+A + LDEI GIG LL++FG+V+ I +S Sbjct: 515 LKILQQVRDEAHRFGVSRHRNRRSKSAFKTELDEIPGIGKKTIEKLLRNFGSVERIKSAS 574 Query: 586 PETLASIEGISKKIACKIYNHFHKNTS 612 L + I + A I N+F Sbjct: 575 LANLEEV--IGQSKAIIIKNYFSNEED 599 >gi|308273880|emb|CBX30480.1| UvrABC system protein C [uncultured Desulfobacterium sp.] Length = 614 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 204/617 (33%), Positives = 327/617 (52%), Gaps = 28/617 (4%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH------RITHMISQINNIRFT 61 PGVY M D G ++YVGKA NL+KR+ SY S+ + +I +I + Sbjct: 14 SSPGVYLMKDAGGEIIYVGKALNLKKRLSSYFISSESNTQQQMNLKTGVLIKKIVSFETI 73 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 +T TE EAL+LE+N+IK+ KPR+N++L+DDK +P + + K K P L R + Y Sbjct: 74 ITGTEKEALILESNLIKKYKPRYNVILKDDKRYPSLRLDIKSKYPNLKVIRIPKNDKAMY 133 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPF+S AV +T+ + +TF LR C FR RTRPCL +Q+ C GPC EI Y Sbjct: 134 FGPFSSAGAVRQTLKLIHKTFKLRKCTTGAFRKRTRPCLNYQMGMCFGPCCNEIDQSMYE 193 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSI 238 E V E FL G L ++I M +A+ +DYE A +RD++ ++ + Sbjct: 194 EAVKEVILFLKGRTPALIKEIKDKMQKASQAQDYELAAAYRDKMYSIRQTLEKQVAVTAD 253 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 + D F++ + + I G +GT F K S + + + + + Sbjct: 254 FMDKDVFAVIGDNEHSVITLLTVRSGYLQGTRHFGFKATISSDSEMLGGFIRQYYEKTNI 313 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P +++S E+T L+E G KV+I PK+GE+ ++++ A+ NA + +S+ Sbjct: 314 IPHEVIVSTAMEDTPLIEEWLTDIKGEKVRIYEPKKGERFELVKMAIQNAENELNEIISS 373 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 S +L K+ + +P RIE +DNS+I G + V MVV K+ YRK+++ Sbjct: 374 ITSSTDLLSRLQKRLGMDRMPVRIECFDNSNISGKNPVSAMVVFENAKPAKSLYRKYSIK 433 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V +D A M L RRF ++ K +E ++PD++++DGGKG ++ Sbjct: 434 T--VPEHNDYAYMAEALTRRF-RINKEKE-------------ITYPDLLMIDGGKGHINI 477 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGME--KFFVKKGEALVLNMRDPILYFIQRLRDE 536 +L ++N+ + +I IAK + +E + + + +L+F++R+RDE Sbjct: 478 VYNILNEMNLTGKFELIGIAKKDEARGELEDKIYQPGRSNPVNFTRERDLLFFLERIRDE 537 Query: 537 AHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 HRFAI+ HRK+ RKK+ +S LD++NGIG +K +LL+ FG++K I ++PE L+S+ GI Sbjct: 538 THRFAISFHRKQIRKKSIHSALDDVNGIGKKKKEMLLKHFGSIKKIRAATPEELSSLPGI 597 Query: 596 SKKIACKIYNHFHKNTS 612 + +IA I S Sbjct: 598 TVEIANAIKEVLKIEES 614 >gi|145219356|ref|YP_001130065.1| excinuclease ABC subunit C [Prosthecochloris vibrioformis DSM 265] gi|145205520|gb|ABP36563.1| Excinuclease ABC subunit C [Chlorobium phaeovibrioides DSM 265] Length = 636 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 181/631 (28%), Positives = 294/631 (46%), Gaps = 51/631 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVT 63 +P+ PGVYQ + GRV+YVGKA NL+ R++SY + + + +++ I ++ +T Sbjct: 32 SLPKEPGVYQFRNDKGRVIYVGKAKNLRSRVRSYFSNPLQQSGKTQVLVTHIRDLEIIIT 91 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +EVEAL+LE N+IK LKPR+NI L+DDK++P+++IT P ++ R+ + + +FG Sbjct: 92 SSEVEALILENNLIKELKPRYNINLKDDKTYPWLVIT-AEPFPRIFITRNRTRDRSIWFG 150 Query: 124 PFASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 P+ + ++ + F +RSC +++ + + CL + I +C GPC G Sbjct: 151 PYTEAGQLRTILDLISSIFPVRSCRHPLTPENIASKKYKLCLDYHIHKCKGPCEGLQEEG 210 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y+E + E + L G L+ + M A +E A + +L +L + Sbjct: 211 DYLEMIGEIVRLLKGKTAGLRRDLHEKMLTAAEDLRFEEAAEIKLQLDSLKRYSERQKIV 270 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D ++ ++ AC G+ G+ F L + A IL L Y Sbjct: 271 AADGADRDAVAVAIGEDEACGVVFRIREGKMLGSQHFILTNTKGESEATILGRVLETHYL 330 Query: 296 DKP--CPENILLSEEAEETSL-------LEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 P+ +LL E EE + E +++ TVP+ GEK +++ Sbjct: 331 KTADLMPDEVLLPELPEEEAAEALRALGREQQGEGGRQKEMRFTVPQIGEKAHLLDMCRQ 390 Query: 347 NAHRSHTQKLSTEISHQMILKD------FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMV 400 NA + + + ++ + L + P RIE +DNSH+ G V MV Sbjct: 391 NARHHLAEYMVQKQKRGEAAREHSGSKALAEALHLENTPNRIECFDNSHLQGTDYVSAMV 450 Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSF 460 +K YRKF L N + DD A M + RR+ + E Sbjct: 451 CFVMGRPLKGGYRKFKL--NSFEGSDDYAAMEEAINRRYGGSLSKE-------------- 494 Query: 461 PSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVL 520 PD++I+DGGKGQ++ A+ L L V + +I +AK + E F + L Sbjct: 495 LPLPDLIIVDGGKGQVNTARKALDALGVS--VPVIGLAKRLE-----EIFIPFTPDPFNL 547 Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVK 579 P L +Q+LRDE+HRFAI+ HR RRK+ + L I GIG LL+ FG+ + Sbjct: 548 PKTSPALKLLQQLRDESHRFAISYHRTLRRKRTLQTELTAIEGIGEKTAFTLLERFGSAE 607 Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHKN 610 ++ ++ E LA G K A ++NH+H Sbjct: 608 GVAAATLEELAKTAGTMK--AETVFNHYHSE 636 >gi|89098899|ref|ZP_01171779.1| excinuclease ABC subunit C [Bacillus sp. NRRL B-14911] gi|89086303|gb|EAR65424.1| excinuclease ABC subunit C [Bacillus sp. NRRL B-14911] Length = 590 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 178/613 (29%), Positives = 304/613 (49%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D V+YVGKA L+ R++SY + H + ++++I + + VT + Sbjct: 12 LPDQPGCYLMKDRQATVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVNEIEDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 ++EAL+LE N+IK+ P++N++L+DDKS+P+I +T + P L R+ +G YFGP+ Sbjct: 71 DMEALILEMNLIKKYDPKYNVMLKDDKSYPFIKLT-AERHPRLITTRNVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A +T L R + LR C+ R CL + + +C PC +S ++Y + V Sbjct: 130 PNVQAANETKKLLDRIYPLRKCSTLP----DRVCLYYHMGQCLAPCVKPVSEKQYKDIVD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRM 242 E +FL+GG ++K+++ M A + D+E A RD++A + + Sbjct: 186 EIARFLNGGYKDIKKELTVKMTAAAEELDFERAKELRDQIAHIEATMEKQKMTSTDFTDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ E + + P Sbjct: 246 DVFGFAVDKGWMCVQVFFIRQGKLIERDVSLFPVYGEPEEEMLTFMGQFYTKANHFKPRE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358 IL+ + E ++ K P++G+K+ +++ A NA + +K Sbjct: 306 ILVPDTVNEEMAEKLLEVKVLK-------PQRGQKKDLVKLAGKNARIALQEKFSLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ ++ + + P RIE +DNS+I G V M+V + K +YRK+ + Sbjct: 359 EERTIKAVENLGRQLGI-YTPHRIEAFDNSNIQGTDPVSAMIVFIDGKPEKREYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 VK DD MR + RR+++++K PD++I+DGGKG + + Sbjct: 418 T--VKGPDDYESMREAVRRRYTRVLKEG--------------LPIPDLIIVDGGKGHIES 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 + VL+ +L ++ I I +AK K + E + L Y +QR++DE Sbjct: 462 VRDVLENELGLD--IPISGLAKDEKHRTSQ-LLYGNPLEIIPLERNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R K+A+ S LD+I GIG RK+LLL++FG+VK + + + +I GI Sbjct: 519 HRFAITFHRQLRGKSAFQSLLDDIPGIGEKRKKLLLKTFGSVKKMKEAGLDEFTAI-GIP 577 Query: 597 KKIACKIYNHFHK 609 +A ++ N + Sbjct: 578 ANVAQELKNKLSE 590 >gi|91205429|ref|YP_537784.1| excinuclease ABC subunit C [Rickettsia bellii RML369-C] gi|119367829|sp|Q1RIW9|UVRC_RICBR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|91068973|gb|ABE04695.1| Excinuclease ABC subunit C [Rickettsia bellii RML369-C] Length = 635 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 236/642 (36%), Positives = 356/642 (55%), Gaps = 49/642 (7%) Query: 1 MSSE--QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNI 58 + S+ +PE GVY+M D +V+YVGKA NL+KR+ +Y + + M++ ++ Sbjct: 11 IKSKLIDIPERSGVYRMFDANKQVIYVGKAKNLKKRLTNY-IKTDLDTKTLRMVANTCSL 69 Query: 59 RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118 +++T +EVEALLLEA +IK+ +P+FNILL+DDKSFP+I + H P L K+R + Sbjct: 70 EYSITNSEVEALLLEAQLIKKFQPKFNILLKDDKSFPFIKLRLDHDFPQLLKYRGRALND 129 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 G +FGPFAS V T++ LQ+ F LRSC D+ F RTRPCL ++IKRC PC G+I+ + Sbjct: 130 GKFFGPFASATEVNTTLSELQKIFKLRSCTDNYFNSRTRPCLQYEIKRCYAPCVGKINKK 189 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y E V + K FL G + L+E +++ M + + + +E A RDR+ ALS++Q Sbjct: 190 DYAELVGQVKDFLQGRSKELQENLSKKMEELSEQMRFEEAAEIRDRIKALSYVQLKAGIT 249 Query: 239 --YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 D ++ C++ + GQ G +F + ST ++L +FL QFY Sbjct: 250 DIVKDADIIAIVEKNGHYCVEVFLYRIGQACGNIPYFPTSTENSTKEEVLKHFLLQFYQK 309 Query: 297 KPCPENILLSEEAEETS-LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P I+++ E ++ ++E K+ IT+P G K K+++ A NA S Q Sbjct: 310 QQVPPGIIINHEIDDKDNIIEAIRNINDFAKLSITIPASGGKLKLVQNAQENALFSLEQY 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L +Q ++ + + F LP IP+RIE+YDNSHI G AVG M+V G++GF K +YR F Sbjct: 370 LKKFAKNQELMFEVKELFNLPEIPERIEVYDNSHIQGKFAVGVMIVAGKSGFDKKEYRVF 429 Query: 416 NL--------------------------HPNDVKTQDDCAMMRMVLERRFSQLIKNEENL 449 +L P DD M+R VL RR ++L + Sbjct: 430 SLSSRDSITGSSKSTNNDSISCFLDTVDKPRYDTKGDDYEMLRQVLTRRLTRLKQE---- 485 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 P ++I+DGGKG L + V+ KL ++ I + ++KGP R+AG+E+ Sbjct: 486 ----------PHRLPSLMIIDGGKGHLGIVKEVMNKLQMD--IPFVCMSKGPDRNAGLEQ 533 Query: 510 FFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRK 568 F + E LN P++ ++Q LRDEAH FAI HR R +A S LDEI GIG RK Sbjct: 534 FHMVGREVFTLNKNLPLMKYLQILRDEAHNFAIKNHRLSRSRAIKVSSLDEIEGIGDTRK 593 Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 + LL FG+ K +S ++ + L+ ++GISK +A I+N HKN Sbjct: 594 KALLHYFGSYKAVSDATLDELSKVKGISKSLAKMIFNALHKN 635 >gi|297568830|ref|YP_003690174.1| excinuclease ABC, C subunit [Desulfurivibrio alkaliphilus AHT2] gi|296924745|gb|ADH85555.1| excinuclease ABC, C subunit [Desulfurivibrio alkaliphilus AHT2] Length = 610 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 199/615 (32%), Positives = 310/615 (50%), Gaps = 26/615 (4%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTVTCTE 66 + PGVY M D G+VLYVGKA +L+KR++SY + + M+ ++ + +T TE Sbjct: 12 DAPGVYLMRDAGGQVLYVGKAVSLRKRLQSYSRIDPAGRSKTSVMLGKVAKVDTVLTRTE 71 Query: 67 VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126 EAL+LEA +IK+ +PR+N++LRDDKS+P++ +T + + P L R S YFGP+A Sbjct: 72 KEALILEAGLIKQHRPRYNVILRDDKSYPHLKVTVQEEWPRLLMTRRVSKDGARYFGPYA 131 Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186 S A+ +T+ L F LR C F R CL Q+ RC PC G I+ E Y + V + Sbjct: 132 SPAAMWETLRLLNSLFPLRRCKAKKFAPGQRACLNHQMGRCPAPCIGAITPEAYRQRVSQ 191 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM---D 243 L G L ++ M +A ++E A RD++ AL+ + D Sbjct: 192 VLAILEGRKRELTRELTGRMQEAAAGLNFEEAAALRDQIRALNQTLEKQVVLGRERVDLD 251 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF-YTDKPCPEN 302 F L F G FFL + + R + + +P P + Sbjct: 252 VFGLVRRHGQVAAALLFIREGALADKREFFLAEPVGEDDEVLAELLRRFYEHPQRPIPRS 311 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 ILL AE + L ++ G V++ VP++G+K+ ++ A NA + + + Sbjct: 312 ILLPLPAEGAAALTEWLSEKRGGPVRLLVPRRGDKKALVTMAGDNAGQLLAAREKQQAGW 371 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 + ++ + L P+RIE D S++ G AVG +V + ++YR+F++ ++ Sbjct: 372 LSLGEEIRRALRLTSSPQRIECLDISNLGGREAVGSLVSFRQGEKESSRYRRFHIR--NL 429 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 T DD AMMR VL R + E + PD+++LDGGKGQL AQ V Sbjct: 430 ATPDDYAMMREVLLRHLCRAAAAE---------------TLPDLLVLDGGKGQLGVAQAV 474 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 L +L + ++SIAK + +G F + L L P+L F ++RDEAHRF I Sbjct: 475 LAELALPG-PELVSIAKDRE-GSGERLFRPGRKNHLKLAQHSPVLLFFMKIRDEAHRFGI 532 Query: 543 TTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR+ RR+K S L+EI G+GP RK+ LL+ G++ ++ ++PE LA++ GI ++A Sbjct: 533 TFHRRLRRQKQLVSRLEEIPGVGPGRKQALLKQLGSLAGVAAATPEQLAAVPGIGPELAA 592 Query: 602 KIYNHFH-KNTSHTP 615 I+ H TP Sbjct: 593 VIHRHLQLPRDGETP 607 >gi|319651771|ref|ZP_08005897.1| excinuclease ABC subunit C [Bacillus sp. 2_A_57_CT2] gi|317396590|gb|EFV77302.1| excinuclease ABC subunit C [Bacillus sp. 2_A_57_CT2] Length = 597 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 175/618 (28%), Positives = 296/618 (47%), Gaps = 43/618 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D G ++YVGKA L+ R++SY + H + ++++I + + VT + Sbjct: 12 LPAQPGCYLMKDRQGTIIYVGKAKILKNRVRSYFTGS-HDGKTLRLVNEIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 ++EAL+LE N+IK+ P++N++L+DDKS+P+I +T + P L R +G YFGP+ Sbjct: 71 DMEALILEMNLIKKYDPKYNVMLKDDKSYPFIKLT-AERHPRLITTRKVKKDRGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A +T L R + LR C+ R CL + + +C PC + ++Y + Sbjct: 130 PNVQAANETKKLLDRIYPLRKCSTLP----DRVCLYYHLGQCLAPCVKAVGEDQYKQMTD 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRM 242 E KFL+GG +K+ + M A + D+E A RD++A + + Sbjct: 186 EIAKFLNGGYKEIKKDLTAKMTAAAEELDFERAKELRDKIAHIDATMEKQKMTMTDFTDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +E + + P Sbjct: 246 DVFGYAVDKGWMCVQVFFIRQGKLIERDVSMFPIYNEPEEEILTFLGQFYTKANHFKPRE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358 IL + + ++ K P++G+K+ +++ A NA + +K Sbjct: 306 ILAPDSVDAEMAEQLLDVKVLK-------PQRGQKKDLVKLAYKNAKIALQEKFSLIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ + + + P RIE +DNS+I G V M+V + K +YRK+ + Sbjct: 359 EERTIKAVENLGDQLGI-YTPHRIEAFDNSNIQGTDPVSAMIVFIDGKPEKREYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 VK DD MR V+ RR+++++K E PD++++DGGKG + A Sbjct: 418 S--VKGPDDYESMREVVRRRYTRVLKEE--------------LPLPDLIMIDGGKGHVEA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 + VL+ +L ++ I I + K K + + + L Y +QR++DE Sbjct: 462 VRDVLENELGLD--IPISGLVKDEKHRTSQ-LLYGNPLQIIPLARNSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R K A S LD+I GIG RK+ LL++FG+VK + + E I GI Sbjct: 519 HRFAITFHRQLRGKNAFQSILDDIPGIGEKRKKQLLKAFGSVKKMKEAPIEEYRKI-GIP 577 Query: 597 KKIACKIYNHFHKNTSHT 614 + +A ++ + + Sbjct: 578 ENVAEELKLRLEEQNGNP 595 >gi|225012391|ref|ZP_03702827.1| excinuclease ABC, C subunit [Flavobacteria bacterium MS024-2A] gi|225003368|gb|EEG41342.1| excinuclease ABC, C subunit [Flavobacteria bacterium MS024-2A] Length = 614 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 184/623 (29%), Positives = 309/623 (49%), Gaps = 50/623 (8%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + +P+ GVYQ D + RV+YVGKA NL+KR+ SY + + + + ++ I I Sbjct: 25 IQLKSLPQVAGVYQYFDKSDRVIYVGKAKNLKKRVSSYFNKVHDNKKTSVLVKNIVRIEH 84 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE++ALLLE N+IK+ +PR+N+LL+DDK++P+I I K P ++ R Sbjct: 85 IVVETEMDALLLENNLIKKYQPRYNVLLKDDKTYPWICI-KKEPFPRVFYTRRVIKDGSE 143 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175 YFGP+ ++ V + ++ + LRSC + + + + CL + + C PCT +I Sbjct: 144 YFGPYTNMKTVMTLLGLVRTLYPLRSCKFDLSDEKIVAGKYKVCLEYHMGNCLAPCTKQI 203 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 +E Y + ++ + G + + R M+ ++E A + ++++ +L++ Q + Sbjct: 204 ETEDYDNNIKAIREIIKGNFKDSIQGFKRQMDSFATAMEFEKAQVVKEKIESLTNYQAKS 263 Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 N +D FS+ +++ + G + T +K + ++A +L + + Sbjct: 264 TIVSPKINNVDVFSIVSDESYGYVNYIQVSHGGIVRSHTLEIKKKLDESDATLLQLGIIE 323 Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 N + E +L E +K++VP QG+KRK+++ ++ NA Sbjct: 324 IRQLFFSSANEIYLSEP--VALGED---------LKVSVPLQGDKRKLVDLSIRNAKFFR 372 Query: 353 TQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 ++ E I+ LP P IE +DNS+I G + V VV Sbjct: 373 MERFKQMKIVDPERHTSRIMSQMKTDLRLPKEPYHIECFDNSNIQGSNPVAACVVFKNGK 432 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 K +YR +N+ V+ DD A M V+ RR+ +L++ E P + Sbjct: 433 PSKKEYRHYNIKT--VQGPDDFASMEEVVYRRYKRLLEEE--------------APLPQL 476 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526 +++DGGKGQLS+A L L + +I+II IAK + E +F + L ++ R Sbjct: 477 IVIDGGKGQLSSAVKSLDLLELRGKISIIGIAKRLE-----EIYFPEDSIPLYIDKRSES 531 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 L +QR RDEAHRF IT HR++R K + S LD+I+GIGP + LL F ++K I ++S Sbjct: 532 LKILQRARDEAHRFGITFHRQKRSKGSLNSELDQIDGIGPATRDKLLVHFKSLKRIKKAS 591 Query: 586 PETLASIEGISKKIACKIYNHFH 608 E L I G K+ KIY H Sbjct: 592 KEELEKILG--KQNGAKIYIGLH 612 >gi|87302683|ref|ZP_01085494.1| excinuclease ABC subunit C [Synechococcus sp. WH 5701] gi|87282566|gb|EAQ74524.1| excinuclease ABC subunit C [Synechococcus sp. WH 5701] Length = 687 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 184/633 (29%), Positives = 307/633 (48%), Gaps = 29/633 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFT 61 +++P PG Y M D+ R+LY+GK+ +L+ R++SY ++ + RI+ M+ Q+ I F Sbjct: 42 LKELPAEPGCYLMRDVEDRILYIGKSKSLRSRVRSYFRESHDLSPRISLMVRQVCEIEFI 101 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ--G 119 VT ++ EAL LE+N+IK +P FN+LL+DDK +PY+ IT P ++ R Sbjct: 102 VTDSDAEALALESNLIKAHQPHFNVLLKDDKKYPYLCITWSEPYPRIFITRRRRLRSPLD 161 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++GP+ V + +T ++R F LR ++R RT CL F I RC G C +IS E Sbjct: 162 RFYGPYVDVGLLRRTFFLVKRVFPLRQRPQPLYRDRT--CLNFDIGRCPGVCQEKISPEA 219 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + + + G + L + + M + +ED+E+A RD+L L + Sbjct: 220 YQQILRKVAMVFQGRSDELLDLLRAQMARYADREDFEAAARVRDQLQGLEQLTAEQKMTL 279 Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D +L ++ LA +Q G+ G + + +IL L + Y Sbjct: 280 PDASVSRDVLALACDQRLAAVQLFQMRAGKLVGRLGYTADASI-AAPGEILQRVLEEHYG 338 Query: 296 D---KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 P +L+ L++ ++ G KV++ P++ +K ++IE NA Sbjct: 339 QVEPVEIPPEVLVQHPLPRQELVQEWLSERRGRKVRLAHPQRQQKAELIELVERNAAFEL 398 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 ++ + HQ+ +D + L P+RIE YD SHI G AV VV + K Y Sbjct: 399 SRAQRSAEQHQLATEDLAQLLDLSQPPRRIEGYDISHIQGSDAVASQVVFVDGLPAKQHY 458 Query: 413 RKFNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENLNFHPKKQE--------YSFPS 462 RK+ + + + D M ++ RRF + + + + + Sbjct: 459 RKYRIQSSSISAGHSDDFMAMAEIMRRRFRRWSQAKAEGADLTELRRAASTALHTGGLND 518 Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522 WPD+V++DGGKGQLSA L++L++ + + S+AK + E F + L Sbjct: 519 WPDLVMIDGGKGQLSAVMEALRELDLHEELVVCSLAKQRE-----EVFLPGAIQPLESEP 573 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMI 581 + ++RLRDEAHRFA++ HR++R + S L EI G+GP R R LL F ++ I Sbjct: 574 DQLGVLLLRRLRDEAHRFAVSFHRQQRGERMKRSRLSEIPGLGPKRVRDLLAHFRSIDAI 633 Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +SPE +A+ G+ +A +++ +FH Sbjct: 634 QLASPEQIAAAPGVGPALAQQVWGYFHPGDPEQ 666 >gi|253753449|ref|YP_003026590.1| UvrABC system protein C [Streptococcus suis P1/7] gi|253755723|ref|YP_003028863.1| UvrABC system protein C [Streptococcus suis BM407] gi|251818187|emb|CAZ55988.1| UvrABC system protein C [Streptococcus suis BM407] gi|251819695|emb|CAR45497.1| UvrABC system protein C [Streptococcus suis P1/7] Length = 594 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 174/614 (28%), Positives = 299/614 (48%), Gaps = 41/614 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y + G+++YVGKA NL+ R++SY + T + ++++I + F Sbjct: 8 KLELLPDSPGCYLHKNKYGKIIYVGKAKNLRNRVRSYFRGAHDT-KTEALVAEIADFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+I+ KPR+NI+L+DDKS+P+I IT K + P L R G Y Sbjct: 67 VTDSNIEALLLEINLIQENKPRYNIMLKDDKSYPFIKIT-KERHPRLLITRQIKKDGGQY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A +T+ L+R + R C ++ CL + + +C S Y Sbjct: 126 FGPYPDVGAANQTLKLLERLYPFRKCKLPENKY----CLYYHLGQCLAHGDNMPSLSDYD 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + E +FL+G + + +++ M A ++E A +RD L ++S ++ + + Sbjct: 182 KMAKEVAQFLTGHDDKIIKEVQDKMKAAAGNLEFEKAAEYRDVLQSISTLRTKQRVMAHD 241 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ +++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERNVNLFPYYNDAGEDFLTYIGQFYRDQQHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ ++ ++ + K P++GEK+++I A NA + Sbjct: 302 IPSEVLIPQDIDQEAVEALVDTKVIK-------PQRGEKKQLINLATKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +++ + +P RIE +DNS+IMG S V MVV K +YRK Sbjct: 355 LEKNLEKTYGAVENIGQLLGIPTPV-RIEAFDNSNIMGTSPVSAMVVFENGVPNKKEYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + N V+ DD A MR VL+RR+S+++++ + PD++I+DGG+G Sbjct: 414 Y--KINTVEGPDDYASMREVLQRRYSRVLRDG--------------LTPPDLIIIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L + + R++ Sbjct: 458 QVNVAKQVIEQ-ELGMSIPIAGLQKNDKHQT-HELLFGNPLEVVELPRNSQEFFLLHRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAI HR+ R K ++S LD I G+GP RK+ L++ F ++ I +S + +A Sbjct: 516 DEVHRFAIEFHRQVRSKNSFSSKLDGIEGLGPKRKQTLMKHFKSIGNIQSASLQEIAEA- 574 Query: 594 GISKKIACKIYNHF 607 G+ K+A K+ Sbjct: 575 GVPYKVAEKVKESL 588 >gi|317969880|ref|ZP_07971270.1| excinuclease ABC subunit C [Synechococcus sp. CB0205] Length = 682 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 193/652 (29%), Positives = 307/652 (47%), Gaps = 48/652 (7%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN---NHTHRITHMISQINNIR 59 +++P PG Y M D R+LY+GKA L+ R++SY S H+ RI M+ Q+ I Sbjct: 15 LKEVPTEPGCYLMRDSEDRILYIGKAKVLRNRVRSYFQSGSGHGHSPRIALMVRQVCEIE 74 Query: 60 FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ- 118 F VT +E EAL LEAN+IK +P FN+LL+DDK +PY+ IT P ++ R Sbjct: 75 FIVTDSEAEALALEANLIKNHQPHFNVLLKDDKKYPYLCITWSEAYPRIFITRRRRFRSP 134 Query: 119 -GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 ++GP+ V + +T+ ++R F LR + R RT CL + I RC G C +ISS Sbjct: 135 LDRFYGPYVDVGLLRRTLGLVKRVFPLRQRPQPLHRDRT--CLNYDIGRCPGVCQEKISS 192 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E Y + + G N L + + M + + D+ESA RD+L + + Sbjct: 193 EDYHRTLRQVAMVFQGRNEELLDLLHEQMERYAERLDFESAARVRDQLQGIDTLTADQKM 252 Query: 238 IYNR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ--------- 284 D ++ ++ +A +Q G+ G F + Sbjct: 253 SLGDSSISRDVLAMAADERVAAVQLFQMRAGKLVGRLGFTADAIGMPSAEDGAGGDLPPS 312 Query: 285 ---------ILSYFLRQFYTD---KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVP 332 IL + + Y+ P +LL + LLE + G KV+++VP Sbjct: 313 EARRAAMGRILQTVIEEHYSQVEGVEIPPELLLQAPLPQQQLLEDWLSELRGRKVRLSVP 372 Query: 333 KQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMG 392 ++ +K +IE NA+ + + + +D + L P+RIE YD SHI G Sbjct: 373 QRAQKADLIELVERNANYELERARRASEQNLLATEDLAQLLELNTPPRRIEGYDISHIQG 432 Query: 393 CSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENLN 450 AV VV + K YRK+ + + +++ D M ++ RRF + + + Sbjct: 433 SDAVASQVVFIDGLPAKQHYRKYKIQSSSIRSGHSDDFMAMAEIMRRRFRRWAQAKAAGA 492 Query: 451 FHPKKQEYSFP--------SWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPK 502 + ++ + WPDVV++DGGKGQLSA L++LN++ + + S+AK + Sbjct: 493 DLKELRQSAGSALHTGGLNDWPDVVMIDGGKGQLSAVMEALRELNLDEDVVVCSLAKQRE 552 Query: 503 RSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEIN 561 E F E L + ++RLRDEAHRFA++ HR++R + S L +I Sbjct: 553 -----EVFIPGVKEPLESEPEQLGVQLLRRLRDEAHRFAVSFHRQQRGERMKRSRLSDIP 607 Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 G+GP R + LL F ++ I +SPE LA+ G+ +A I++HFH Sbjct: 608 GLGPKRIKELLAHFRSIDAIQLASPEALAAAPGMGAGLAKVIWDHFHPGGDE 659 >gi|161950134|ref|YP_402756.2| excinuclease ABC subunit C [Shigella dysenteriae Sd197] gi|119367837|sp|Q32HE0|UVRC_SHIDS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C Length = 575 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 201/580 (34%), Positives = 313/580 (53%), Gaps = 31/580 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + ++++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G K+ + +G++ + ++ A NA + T K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP + R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I + + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V +N ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRL 570 +RDE+H AI HRK+R K S L+ I G+GP R++ Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQN 571 >gi|325479390|gb|EGC82486.1| excinuclease ABC, C subunit [Anaerococcus prevotii ACS-065-V-Col13] Length = 616 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 193/619 (31%), Positives = 313/619 (50%), Gaps = 26/619 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 +++PE PGVY M + ++YVGKA +L+KR++ Y +S N ++ M++ I++ + Sbjct: 9 KLKELPELPGVYIMRNADDEIIYVGKAISLKKRVRQYFDNSKNKGAKVLAMVNNIDHFEY 68 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 + EVEAL+LE+N+IK+ +P++NI+LRDDK +PYI I K P + K R S Sbjct: 69 IIVQNEVEALVLESNLIKKNRPKYNIVLRDDKQYPYIKI-CNEKYPRIKKVRQVSKDGSK 127 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178 YFGPF AV I+ + R+C + + RPCL + IK+C GPC G+ + Sbjct: 128 YFGPFPDAYAVNDAIDLFHLYYPFRTCNLNFDKGASLDRPCLNYFIKKCKGPCVGKEDEK 187 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 +Y++ + + + FL+ + + I M++ + K ++E A +RD ALS I + Sbjct: 188 EYLDHMKDVENFLANKDDKIPNWILEKMSEESKKLNFEMAAKYRDYYRALSVISEKQNVT 247 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + MD ++ N +Q F G+ +F+K D +++I+S F++QFY Sbjct: 248 ETNGDDMDIIAMSKGMNTIVVQVFFMRQGKIVDRQHYFIKNDFMERDSEIISSFIKQFYL 307 Query: 296 DK-PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR---- 350 D P IL+ + + + KV I PK G+KR++++ A NA Sbjct: 308 DILYIPREILVQTLPNDIDSISEFLTNKRKTKVTIHEPKIGKKRELVDMAARNALDMRIK 367 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E + + L R+E YD S+I G +VG MVV + + Sbjct: 368 HDKRVEKKERKRSSGISQLKEILGLE-DVFRLEAYDISNISGVRSVGSMVVFEDGIPMPK 426 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 +YRKF + V+ +D A + VL RR Q I+ + N F S PD++++D Sbjct: 427 EYRKFKIKT--VEGPNDYASHKEVLTRRLKQGIEEKSKGNTQT-----GFGSLPDLILMD 479 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ++ A+GVL +L + I I + K K + + E + +N RDP+ I Sbjct: 480 GGKGQVNIAKGVLNELGL--NIEIAGLVKDDKHTTRA---IIYNNEEIPINRRDPVYKLI 534 Query: 531 QRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 +++EAHRFAI HRK + S LD I G+G ++ L F T+ I ++S E L Sbjct: 535 YEIQEEAHRFAINYHRKLMQNTMKTSELDNIKGVGKKTRKNLYTHFKTISNIKKASVEEL 594 Query: 590 ASIEGISKKIACKIYNHFH 608 + + K A +IY +F Sbjct: 595 MEVPLVGKSQALEIYKYFR 613 >gi|157827032|ref|YP_001496096.1| excinuclease ABC subunit C [Rickettsia bellii OSU 85-389] gi|157802336|gb|ABV79059.1| excinuclease ABC subunit C [Rickettsia bellii OSU 85-389] Length = 633 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 236/642 (36%), Positives = 356/642 (55%), Gaps = 49/642 (7%) Query: 1 MSSE--QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNI 58 + S+ +PE GVY+M D +V+YVGKA NL+KR+ +Y + + M++ ++ Sbjct: 9 IKSKLIDIPERSGVYRMFDANKQVIYVGKAKNLKKRLTNY-IKTDLDTKTLRMVANTCSL 67 Query: 59 RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118 +++T +EVEALLLEA +IK+ +P+FNILL+DDKSFP+I + H P L K+R + Sbjct: 68 EYSITNSEVEALLLEAQLIKKFQPKFNILLKDDKSFPFIKLRLDHDFPQLLKYRGRALND 127 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 G +FGPFAS V T++ LQ+ F LRSC D+ F RTRPCL ++IKRC PC G+I+ + Sbjct: 128 GKFFGPFASATEVNTTLSELQKIFKLRSCTDNYFNSRTRPCLQYEIKRCYAPCVGKINKK 187 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y E V + K FL G + L+E +++ M + + + +E A RDR+ ALS++Q Sbjct: 188 DYAELVGQVKDFLQGRSKELQENLSKKMEELSEQMRFEEAAEIRDRIKALSYVQLKAGIT 247 Query: 239 --YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 D ++ C++ + GQ G +F + ST ++L +FL QFY Sbjct: 248 DIVKDADIIAIVEKNGHYCVEVFLYRIGQACGNIPYFPTSTENSTKEEVLKHFLLQFYQK 307 Query: 297 KPCPENILLSEEAEETS-LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P I+++ E ++ ++E K+ IT+P G K K+++ A NA S Q Sbjct: 308 QQVPPGIIINHEIDDKDNIIEAIRNINDFAKLSITIPASGGKLKLVQNAQENALFSLEQY 367 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L +Q ++ + + F LP IP+RIE+YDNSHI G AVG M+V G++GF K +YR F Sbjct: 368 LKKFAKNQELMFEVKELFNLPEIPERIEVYDNSHIQGKFAVGVMIVAGKSGFDKKEYRVF 427 Query: 416 NL--------------------------HPNDVKTQDDCAMMRMVLERRFSQLIKNEENL 449 +L P DD M+R VL RR ++L + Sbjct: 428 SLSSRDSITGSSKSTNNDSISCFLDTVDKPRYDTKGDDYEMLRQVLTRRLTRLKQE---- 483 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 P ++I+DGGKG L + V+ KL ++ I + ++KGP R+AG+E+ Sbjct: 484 ----------PHRLPSLMIIDGGKGHLGIVKEVMNKLQMD--IPFVCMSKGPDRNAGLEQ 531 Query: 510 FFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRK 568 F + E LN P++ ++Q LRDEAH FAI HR R +A S LDEI GIG RK Sbjct: 532 FHMVGREVFTLNKNLPLMKYLQILRDEAHNFAIKNHRLSRSRAIKVSSLDEIEGIGDTRK 591 Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 + LL FG+ K +S ++ + L+ ++GISK +A I+N HKN Sbjct: 592 KALLHYFGSYKAVSDATLDELSKVKGISKSLAKMIFNALHKN 633 >gi|318041434|ref|ZP_07973390.1| excinuclease ABC subunit C [Synechococcus sp. CB0101] Length = 666 Score = 478 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 189/643 (29%), Positives = 302/643 (46%), Gaps = 37/643 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN---NHTHRITHMISQINNIR 59 +++P PG Y M D R+LY+GKA L+ R++SY S H+ RI M+ Q+ I Sbjct: 18 LKEVPAEPGCYLMRDAEDRILYIGKAKVLRNRVRSYFQSGSGHGHSPRIALMVRQVCEIE 77 Query: 60 FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ- 118 F VT +E EAL LEAN+IK +P FN+LL+DDK +PY+ IT P ++ R Sbjct: 78 FIVTDSEAEALALEANLIKNHQPHFNVLLKDDKKYPYLCITWSEAYPRIFITRRRRFRSP 137 Query: 119 -GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 ++GP+ V + +T+ ++R F LR + + RT CL + I RC G C +ISS Sbjct: 138 LDRFYGPYVDVGLLRRTLGLVKRVFPLRQRPQPLHKDRT--CLNYDIGRCPGVCQEKISS 195 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E Y + + G N L + + M + + D+ESA RD+L + + Sbjct: 196 EDYHRTLRQVAMVFQGRNEELLQLLQEQMERYAERLDFESAARVRDQLQGIDTLTADQKM 255 Query: 238 IYNR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSY----- 288 D +L ++ +A +Q G+ G F T + Sbjct: 256 SLGDSSVSRDVLALAADERVAAVQLFQMRAGKLVGRLGFTADAIGLPTEEERPEALGRIL 315 Query: 289 --FLRQFYTD---KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQ 343 + + Y+ P +LL + L+E + G KV++ VP++ +K +IE Sbjct: 316 QTVIEEHYSQVEPVEIPPELLLQVPLPQQELIEEWLTELRGRKVRLAVPQRSQKADLIEL 375 Query: 344 ALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVG 403 NA + + + +D + LP P+RIE YD SHI G AV VV Sbjct: 376 VTRNAAYELERARRASEQNLLATEDLAQLLELPTPPRRIEGYDISHIQGSDAVASQVVFI 435 Query: 404 ENGFVKNQYRKFNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENLNFHPKKQE---- 457 + K YRK+ + + ++ D M ++ RRF + + + + + Sbjct: 436 DGLPAKQHYRKYKIQSSSIRAGHSDDFMAMAEIMRRRFRRWAQAKAEGADLRELRRAAGT 495 Query: 458 ----YSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK 513 WPDVV++DGGKGQLSA L++LN++ + + S+AK + E F Sbjct: 496 ALHTGGLNDWPDVVMIDGGKGQLSAVMEALRELNLDEELVVCSLAKQRE-----EVFVPG 550 Query: 514 KGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLL 572 + L + + RLRDEAHRFA++ HR++R + S L +I G+GP R + LL Sbjct: 551 AKQPLESEPDQLGVQLLCRLRDEAHRFAVSFHRQQRGERMKRSRLSDIPGLGPKRIKELL 610 Query: 573 QSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615 F ++ I +S E+LA+ G+ +A ++++FH P Sbjct: 611 AHFRSIDAIQLASVESLAAAPGMGPGLARVVWDYFHPQDLPAP 653 >gi|120437498|ref|YP_863184.1| excinuclease ABC subunit C [Gramella forsetii KT0803] gi|189038058|sp|A0M672|UVRC_GRAFK RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|117579648|emb|CAL68117.1| UvrABC system protein C [Gramella forsetii KT0803] Length = 597 Score = 478 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 183/625 (29%), Positives = 303/625 (48%), Gaps = 50/625 (8%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + +P PGVYQ D G++LYVGKA NL+KR+ SY + N+ +HRI M+ +I I+ Sbjct: 8 VQLKTLPNSPGVYQYFDKNGKILYVGKAKNLKKRVTSYFNKNHDSHRIGVMVKKICEIKH 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V +E +ALLLE N+IK+ +PRFN++L+DDK++P+I I + P ++ R Sbjct: 68 IVVASETDALLLENNLIKKHQPRFNVMLKDDKTYPWICI-KNERFPRVFPTRRLIKDGSE 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175 Y+GPF S V ++ ++ + LR+C D + + + CL + + C GPC G Sbjct: 127 YYGPFTSFKTVNTLLDLIKGLYKLRTCNYDLAEDKIRNGKYKVCLEYHLGNCLGPCEGFQ 186 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 E+Y + ++ + G + ++ M Q + K ++E A ++++ L + Q + Sbjct: 187 PEEEYNNNIEAIRQIVKGNFKDSLQRFRNQMKQHSEKMEFEDAQRIKNKIDVLENYQAKS 246 Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 N +D FS+ ++ + G + T +K + ++ ++L + + Sbjct: 247 TVVNPRINNVDVFSVVSDEGYGYVNFLQLSHGAIIRSHTIEMKKKLDESDRELLELAIVE 306 Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 + + + E +KI +PK G+K+KI+E + NA Sbjct: 307 IRQRFSSNSTEIYV--PFKVDVGEE---------LKIVIPKLGDKKKIVELSQRNAKYFR 355 Query: 353 TQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 ++ + ++ + L P+ IE +DNS+I G + V VV Sbjct: 356 QERFKQMKIVDPDRHVNRVMAQMKEDLRLGKEPRHIECFDNSNIQGTNPVAACVVFKNGK 415 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 K YRKFN+ V+ DD A M V+ RR+ +L+ E+L P++ Sbjct: 416 PSKKDYRKFNIKT--VEGPDDFASMEEVVFRRYRRLLNEGEDL--------------PEL 459 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526 +I+DGGKGQLS+ L+ L + +I II IAK + E F+ + L L+ + Sbjct: 460 IIVDGGKGQLSSGVKALETLGLRGKIAIIGIAKRLE-----EIFYPEDSIPLYLDKKSET 514 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 L IQ+LR+EAHRF IT HR +R K A + L+ I GIG LL F ++K I +S Sbjct: 515 LKIIQQLRNEAHRFGITFHRNKRSKTALNTELESIQGIGEKTVVELLTHFRSLKRIKEAS 574 Query: 586 PETLASIEGISKKIACKIYNHFHKN 610 + LA + G A I N +H Sbjct: 575 QKELADVVG--SAKAAIICNFYHSE 597 >gi|15615659|ref|NP_243963.1| excinuclease ABC subunit C [Bacillus halodurans C-125] gi|20140835|sp|Q9K8A9|UVRC_BACHD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|10175719|dbj|BAB06816.1| excinuclease ABC (subunit C) [Bacillus halodurans C-125] Length = 591 Score = 478 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 176/612 (28%), Positives = 297/612 (48%), Gaps = 43/612 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY + H + ++ +I + + VT + Sbjct: 12 LPDQPGCYLMKDRQGTIIYVGKAKVLKNRVRSYFTGS-HDAKTQRLVGEIADFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ P++N++L+DDKS+PY+ +T++ P L R G YFGP+ Sbjct: 71 NIEALILEMNLIKKHDPKYNVMLKDDKSYPYLKLTNEE-HPRLVTTRKLKKDGGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + A +T L R + LR C + CL + I +C PC E++ E+ + V Sbjct: 130 PNAGAANETKKLLDRLYPLRKCRTLP----DKVCLYYHIGQCLAPCVYEVTPEQNEQMVQ 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E +FL G+ +K ++ + M++A + ++E A RD L + + + N Sbjct: 186 EITRFLKYGHKEVKVELEKKMHKAAEELNFERAKELRDTLGYMEAVMEKQTMMVNDRVDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F ++K C+Q F G+ E+ + D P Sbjct: 246 DVFGYAYDKGWMCVQVFFVRQGKLIERDVSIFPFYKEAEEDFLTFIGQFYLQKDHIKPGE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 +LL + + ++ V + +PK+G+K+++++ A+ NA Sbjct: 306 VLLPAGTDAALVEQLL-------DVSVHIPKRGKKKELVDVAMRNATMALKEKFALIERN 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E ++ + +P RIE +DNS+I G V MV + K +YRK+ + Sbjct: 359 EERTIKAVEQLGEAMGIPTP-YRIEAFDNSNIQGTDPVSAMVAFIDGKPNKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V DD MR V+ RR+ +L+K + +L PD++++DGGKGQ++A Sbjct: 418 T--VTGPDDYESMREVVRRRYVRLLKEQRSL--------------PDLIVIDGGKGQIAA 461 Query: 479 AQGVL-KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 AQ +L +L + I + +AK K + + L Y +QR++DE Sbjct: 462 AQEILHDELGLS--IPVCGLAKDEKHRTSQ-LLLGDPPQVVPLKRDSHEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFA+T HR+ R K + S LD++ GIG RKR LL+ FG+VK + +S + ++ I Sbjct: 519 HRFALTFHRQTRSKTFFQSVLDDVPGIGEKRKRQLLKHFGSVKKMKEASIDDFLAL-SIP 577 Query: 597 KKIACKIYNHFH 608 K +A +YN Sbjct: 578 KSVAETLYNKLQ 589 >gi|297171219|gb|ADI22227.1| nuclease subunit of the excinuclease complex [uncultured Gemmatimonadales bacterium HF0200_34B24] Length = 596 Score = 478 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 174/609 (28%), Positives = 284/609 (46%), Gaps = 38/609 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVT 63 ++ PGVY D GRVLYVGKA +L+ R++SY + + ++ +I+ + V Sbjct: 10 KLTTKPGVYIFRDTGGRVLYVGKAKSLRTRVRSYFHREADLGAKNRKLVREIDALETIVV 69 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E EAL+LEAN+IK +PRFNILLRDDK +PYI +T P +Y R + Q YFG Sbjct: 70 GSESEALILEANLIKEHRPRFNILLRDDKQYPYIKVTVGEPFPRVYVTRHVANDQSRYFG 129 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEKYME 182 P+ SV + + + ++ +RSC + + R CL + I RC PC G S Y Sbjct: 130 PYTSVGPMRQALEVVKHLHTVRSCRYDLPKDSPERACLDYHIGRCKAPCVGLQSETDYGA 189 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---Y 239 + + K L G +++ + M A+ D+E A RD LA L + Sbjct: 190 MIDDILKILEGKTEEIRDTVEERMESASALLDFERAAKLRDALAGLDSLAREQRVQRTKG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 D + + L G + + +++ +L + + Y Sbjct: 250 GSFDIVGMARDGELGAGVVLKVRSGLLLSRDSLRFVRIFQESDSDLLESLISRHYLGRGS 309 Query: 297 ---KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 K P +LL ++ + +L + G KV++ VP +GEKR ++E A NA + Sbjct: 310 SVLKDLPREVLLPQDIPGSVVLSEVLSESAGRKVELRVPIRGEKRSLLELAEQNARQVLD 369 Query: 354 QKLSTEISHQMILKD----FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 +++T +D L +P+ + +D SHI G V VV + Sbjct: 370 DRVTTLAHVGDRAEDALFSLQDALDLKVVPRLMVCFDISHIQGTETVASAVVFENGEPKR 429 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 YR + DD M+ +ER F + L D+ ++ Sbjct: 430 TSYRHMRIKGE--WGNDDFRSMKEAVERYFRRQQDEGNPLA--------------DLTVV 473 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGG+ QL+AA L + + +++ ++AK + E F + E++ L+ R+ L+ Sbjct: 474 DGGRAQLTAAVAALDDAGISD-VSVAALAKKRE-----EVFLPGQRESVHLDRRNRALHL 527 Query: 530 IQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 +QR+RDEAHRFA+ +RK R + S L EI GIGP R+ +LL+ FG+++ + +S E Sbjct: 528 LQRIRDEAHRFALRYNRKLRSRRTIRSELGEIPGIGPHRQTVLLRRFGSLQGVREASKED 587 Query: 589 LASIEGISK 597 +A + G S+ Sbjct: 588 IARVPGFSE 596 >gi|116074853|ref|ZP_01472114.1| excinuclease ABC subunit C [Synechococcus sp. RS9916] gi|116068075|gb|EAU73828.1| excinuclease ABC subunit C [Synechococcus sp. RS9916] Length = 656 Score = 478 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 188/634 (29%), Positives = 298/634 (47%), Gaps = 29/634 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFT 61 +++P PG Y M D R+LYVGK+ L+ R++SY S + + RI M Q+ I F Sbjct: 20 LKEIPSEPGCYLMRDREDRILYVGKSKALRSRVRSYFRSRHELSPRIRLMTRQVCEIEFI 79 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ--G 119 VT +E EAL+LE+N+IK +P FN+LL+DDK +PY+ IT P ++ R Sbjct: 80 VTDSEAEALVLESNLIKNHQPHFNVLLKDDKKYPYLCITWSEAYPRIFITRRRRFRSPLD 139 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++GP+ V + +T+ ++R F LR ++ RT CL I RC G C +ISSE Sbjct: 140 RFYGPYVDVGLLRRTLFLVKRVFPLRQRPRPLYADRT--CLNHAIGRCPGVCQEKISSED 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + + G + L+ + M + + D+ESA RD+L L + Sbjct: 198 YHRTLRKVAMVFQGRSDELQVLLNEQMERYAERLDFESAARVRDQLQGLDQLTADQKMSL 257 Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D +L + +A +Q G+ G F QIL + + Y+ Sbjct: 258 PDSSVSRDVLALACDDKVAAVQLFQMRAGKLVGRLGFTAD-AHGLNPGQILQRVIEEHYS 316 Query: 296 DKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 P +L+ + L+E +Q +V I P++ +K +IE NA Sbjct: 317 QVDAVEVPPKLLVQHPLPQQPLMEEWLGEQRERRVVIECPQRRQKADLIELVQRNAEFEL 376 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + + +D + LP P+RIE YD SHI G AV VV + K Y Sbjct: 377 LRAQQGQEQQALATEDLAQLLELPRPPRRIEGYDISHIQGSDAVASQVVFIDGLPAKQHY 436 Query: 413 RKFNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENLNF--------HPKKQEYSFPS 462 RK+ + ++ D M ++ RRF + + + Q Sbjct: 437 RKYKIRSASIQAGHSDDFMAMAEIMRRRFRRWARVKAEGADLGALRHKGGSALQTDGLND 496 Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522 WPDVV++DGGKGQLSA L++LN+ + + S+AK + E F + + + Sbjct: 497 WPDVVMIDGGKGQLSAVMEALRELNLHEDLNVCSLAKQRE-----EIFLPGESQPVDSEP 551 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMI 581 + ++RLRDEAHRFA++ HR++R + S L +I G+GP R R LL F ++ I Sbjct: 552 DQLGVALLRRLRDEAHRFAVSFHRQQRGERMKRSRLSDIPGLGPKRIRDLLAHFNSIDAI 611 Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615 +S + L+ G+ +A +I ++FH + S P Sbjct: 612 QLASVDQLSVAPGVGPSLAQQIRDYFHPDESEAP 645 >gi|223932468|ref|ZP_03624470.1| excinuclease ABC, C subunit [Streptococcus suis 89/1591] gi|223898922|gb|EEF65281.1| excinuclease ABC, C subunit [Streptococcus suis 89/1591] Length = 622 Score = 478 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 173/614 (28%), Positives = 300/614 (48%), Gaps = 41/614 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y + G+++YVGKA NL+ R++SY + T + ++S+I + F Sbjct: 36 KLELLPDSPGCYLHKNKYGKIIYVGKAKNLRNRVRSYFRGAHDT-KTEALVSEIADFEFI 94 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+I+ KPR+NI+L+DDKS+P+I IT K + P L R G Y Sbjct: 95 VTDSNIEALLLEINLIQENKPRYNIMLKDDKSYPFIKIT-KERHPRLLITRQIKKDSGQY 153 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A +T+ L+R + R C ++ CL + + +C S Y Sbjct: 154 FGPYPDVGAANQTLKLLERLYPFRKCKLPENKY----CLYYHLGQCLAHGENLPSLSDYD 209 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + E +FL+G + + +++ M A ++E A +RD L ++S ++ + + Sbjct: 210 KMAKEVAQFLTGHDDKIVKEVQDKMKAAAGNLEFEKAAEYRDVLQSISTLRTKQRVMAHD 269 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ +++ + Sbjct: 270 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERNVNLFPYYNDADEDFLTYIGQFYRDQQHL 329 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ ++ ++ + K P++GEK+++I A NA + Sbjct: 330 IPSEVLIPQDIDQEAVEALVDTKVIK-------PQRGEKKQLINLATKNARVSLEQKFNL 382 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +++ + +P RIE +DNS+IMG S V MVV K +YRK Sbjct: 383 LEKNLEKTYGAVENIGQLLGIPTPV-RIEAFDNSNIMGTSPVSAMVVFENGVPNKKEYRK 441 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V+ DD A MR VL+RR+S++++++ + PD++I+DGG+G Sbjct: 442 YKIKT--VEGPDDYASMREVLQRRYSRVLRDD--------------LTPPDLIIIDGGQG 485 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L + + R++ Sbjct: 486 QVNVAKQVIEQ-ELGMSIPIAGLQKNDKHQT-HELLFGNPLEVVELPRNSQEFFLLHRIQ 543 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAI HR+ R K ++S LD I G+GP RK+ L++ F ++ I +S + +A Sbjct: 544 DEVHRFAIEFHRQVRSKNSFSSKLDGIEGLGPKRKQALMKHFKSIGNIQSASLQEIAEA- 602 Query: 594 GISKKIACKIYNHF 607 G+ K+A + + Sbjct: 603 GVPYKVAELVKENL 616 >gi|72382168|ref|YP_291523.1| excinuclease ABC subunit C [Prochlorococcus marinus str. NATL2A] gi|90111757|sp|Q46L08|UVRC_PROMT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|72002018|gb|AAZ57820.1| Excinuclease ABC subunit C [Prochlorococcus marinus str. NATL2A] Length = 640 Score = 478 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 199/631 (31%), Positives = 318/631 (50%), Gaps = 29/631 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFT 61 + +P PG Y M D R+LYVGK+ L+ R++SY S N + RI+ M+ Q+ +I Sbjct: 17 LKDIPNDPGCYLMKDGEDRLLYVGKSKKLRNRVRSYFRSGNELSPRISLMVRQVADIELI 76 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI--QG 119 VT E EAL LE+N+IK +P FN+LL+DDK +PY+ IT K P ++ R + Sbjct: 77 VTDNESEALTLESNLIKSHQPYFNVLLKDDKKYPYVCITWGDKYPRIFLTRKRRQRQLKD 136 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 Y+GP+ V + +T+ S+++ F LR +++ RT CL + I RC G C EISSE Sbjct: 137 KYYGPYVDVYLLRQTLFSIKKLFPLRQRRIPLYKDRT--CLNYSIGRCPGVCQEEISSED 194 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + + G L+ + + M + +E A RD+L + + I Sbjct: 195 YKNTLKRVEMIFQGRTDELRILLEKQMISFSESLKFEEAGSVRDQLKGIDRLYESQKMII 254 Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D ++ +N++ +Q G+ G +F + ++ +QIL + Y+ Sbjct: 255 PDSSVCRDIIAMASEENISSVQIFQMRSGKLIGRLGYFSDNSNFNS-SQILQQVIENHYS 313 Query: 296 DKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 + P IL+ + L+ + KV I VPK+ K +II+ NA+ Sbjct: 314 NVDPVEIPSEILVQHQLVNNILISDWLSEIKKQKVNINVPKRSRKAEIIKLVEKNANLEL 373 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + ++ + + L D T L +IPKRIE YD SHI G AV VV + + Y Sbjct: 374 QRIKQSQDKNLVELDDLTNILDLENIPKRIECYDISHIQGSDAVASQVVFIDGIAARQHY 433 Query: 413 RKFNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEEN--------LNFHPKKQEYSFPS 462 R++ + ++K DD M V+ RRF + + +E N + Sbjct: 434 RRYKIKSPNIKIGHSDDFESMAEVITRRFRRWARFKEEGGDIDALLSNESSVLDNLNLND 493 Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522 WPD+V++DGGKGQLS+ L+ L ++ + +IS+AK + E F K ++LV Sbjct: 494 WPDLVVIDGGKGQLSSVVAALEGLKLDQNLNVISLAKKKE-----EVFIPKVKQSLVTES 548 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMI 581 P + ++RLRDEAHRFAIT HR++R + S L+EI G+GP R +LLL+ F +++ I Sbjct: 549 NQPGMLLLRRLRDEAHRFAITFHRQKRSQRMKRSQLNEIPGLGPQRIKLLLEHFRSIEAI 608 Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNTS 612 ++ L+S G+ + A I N+FH + + Sbjct: 609 QMATFSELSSTPGLGRSTAVVIRNYFHPDKN 639 >gi|257066537|ref|YP_003152793.1| excinuclease ABC, C subunit [Anaerococcus prevotii DSM 20548] gi|256798417|gb|ACV29072.1| excinuclease ABC, C subunit [Anaerococcus prevotii DSM 20548] Length = 616 Score = 478 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 188/619 (30%), Positives = 304/619 (49%), Gaps = 26/619 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 +++P+ PGVY M + ++YVGKA +L++R++ Y ++ N ++ M+ I++ + Sbjct: 9 KLKELPDLPGVYIMRNAEDEIIYVGKAISLKRRVRQYFDNNKNKGAKVLAMVKNIDHFEY 68 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 + EVEAL+LE+N+IK+ +PR+NI+LRDDK +PYI I K K P + K R G Sbjct: 69 IIVQNEVEALVLESNLIKKNRPRYNIVLRDDKQYPYIKI-CKEKYPRIKKVRQVLKDGGR 127 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178 YFGPF AV I+ + R+C + + RPCL + I +C GPC + + Sbjct: 128 YFGPFPDAYAVNDAIDLFHLYYPFRTCNLNFDKGARLDRPCLNYFIHKCKGPCVDKEDEK 187 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y+ + + KFL + + + MN A+ ++E A +RD ALS I + Sbjct: 188 RYLNHIDDVVKFLENKSEKIPNWVLAKMNDASKDLNFEMAAKYRDYYRALSVISERQNVT 247 Query: 239 ---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + +D ++ N IQ F G+ F +K D T++ I+S F++QFY Sbjct: 248 ETGGDDLDIIAMSKGMNSIIIQVFFMRMGKIVDREHFIIKNDFMETDSDIMSSFIKQFYL 307 Query: 296 D-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR---- 350 D P+ IL+ + + ++ KV I PK G+K+++++ A NA Sbjct: 308 DIMYVPKEILVQYMPADFDSISEFLSRKKKSKVYIHNPKLGKKKELVDMASRNALDMRIK 367 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E + L R+E YD S+ G +VG MVV Sbjct: 368 YDKRVERKERKKSSGINQLMDILNLK-DVFRVECYDISNTSGVLSVGSMVVFEGGIPTPK 426 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 +YRKF + V DD A R VL RR + ++ +E N F S PD++++D Sbjct: 427 EYRKFKIKT--VVGSDDYASHREVLTRRLKRGLEEKEKGNTQT-----GFGSLPDLILMD 479 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ++ A+ V+ L + I + + K K + V E + +N RDP+ I Sbjct: 480 GGKGQVTIAKEVIDGLGLS--IEVAGLVKDDKHTTRA---IVYNNEEIAINRRDPVYKLI 534 Query: 531 QRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 +++EAHRFAI HRK + + LD I G+G ++ L + F T+ I ++S E L Sbjct: 535 YEIQEEAHRFAINYHRKLMQNTMKTTELDNIKGVGEKTRKNLYKHFKTISNIKKASVEEL 594 Query: 590 ASIEGISKKIACKIYNHFH 608 + + K A +IY +F Sbjct: 595 MEVPLVGKVQALEIYKYFR 613 >gi|187934936|ref|YP_001887530.1| excinuclease ABC subunit C [Clostridium botulinum B str. Eklund 17B] gi|187723089|gb|ACD24310.1| excinuclease ABC, C subunit [Clostridium botulinum B str. Eklund 17B] Length = 626 Score = 478 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 201/625 (32%), Positives = 344/625 (55%), Gaps = 19/625 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 + +P+ PGVY M + G V+YVGKA L+ R++ Y S NH+ ++ M+ I+ + Sbjct: 9 QLKILPDEPGVYLMKNSLGEVIYVGKAKILKNRVRQYFQNSKNHSEKVKAMVKNISEFEY 68 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE N+IK+ PR+NILL+DDK +P+I +T + P ++ R + Sbjct: 69 IITDSEMEALILECNLIKKYSPRYNILLKDDKFYPFIKVTINEEFPKIFITRKYAKDGNK 128 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ ++ +V +T+N +++ F +R+C ++ + TRPCL + IK+C+ PC G IS + Sbjct: 129 YFGPYTNIASVYETMNLIKKIFPIRTCKKTITEGGNPTRPCLNYHIKKCNAPCAGYISKD 188 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + E + LSG N +L K+ ++M A+ ++E A RD++ A+++I Sbjct: 189 EYRNMISEVMELLSGKNKDLVNKLQKDMEDASKSLEFEKAASLRDKIIAINNIVEKQKVF 248 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D +LY ++ C+Q F G+ G F L+ + + ILS F+ FY Sbjct: 249 KSQEGDEDFINLYKDEKDCCVQVFFLRDGKVTGREHFILENSTYQEESSILSQFMISFYG 308 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351 P + + ++T +LE + G KV + VPK+G K++++E NA + Sbjct: 309 GTPKVPKHIYIPKEQDTEILEEFLKIKRGSKVNVKVPKKGSKKEMLELVKNNAKLTLEQF 368 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 + L + ++ L++ + L IP RIE +D S+I G +VG M+V + Sbjct: 369 KEKLLMDKKINRGCLEELKELLNLDDIPNRIESFDISNIQGVDSVGSMIVFENGKAKNSD 428 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILD 470 YR+F++ +VK ++ MR +LERRF +K +E + + F ++PD++++D Sbjct: 429 YRRFSIK--NVKNGNEYDSMREILERRFVHGLKEVKEIQERNLQFSNGKFSNFPDLIMMD 486 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ++ A+ VL KL++ +I + + K + S + ++ N ++ FI Sbjct: 487 GGKGQVNVAKEVLNKLDI--QIPVCGLVKDDRHSTRGIIYNNEEIII---NRSSNLMQFI 541 Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 +R++DE HRFAIT HR R K+ +S L++I IG R+R LL FG+V+ I + E L Sbjct: 542 RRVQDEVHRFAITYHRSLRDKRTLHSILEDIPNIGEKRRRALLMKFGSVENIKNAKLEEL 601 Query: 590 ASIEGISKKIACKIYNHFHKNTSHT 614 S E I K A I ++F K+ ++ Sbjct: 602 LSTESIDNKAAESIISYFKKHEHNS 626 >gi|322373163|ref|ZP_08047699.1| excinuclease ABC subunit C [Streptococcus sp. C150] gi|321278205|gb|EFX55274.1| excinuclease ABC subunit C [Streptococcus sp. C150] Length = 595 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 174/619 (28%), Positives = 301/619 (48%), Gaps = 39/619 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPDNPGCYLHKDKFGNIIYVGKAKNLKNRVRSYFRGSHDT-KTELLVSEIADFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+I+ P+FNI L+DDKS+P+I IT K P L R G Y Sbjct: 67 VTESNIEALLLEINLIQENMPKFNIRLKDDKSYPFIKIT-KELYPRLLITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ A + L R F + C + + C + I +C+ + + + Sbjct: 126 FGPYPDAGAANEIKKLLDRIFPFKKCKNP----ANKVCFYYHIGQCNAHTICHTTRDYWQ 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---I 238 V + K FL+G ++ + ++ M + + ++E A +RD + A+S ++ Sbjct: 182 GLVEDVKNFLNGHDNKIVNQLKVKMKDMSDQMEFERAAEYRDLIEAVSTLRTKQRVIRQD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ +E+ + + Sbjct: 242 MQDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNEAEEDFLTYMGQFYLDSRHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ I + + ++ S+ G VK+ P++GEK++++ A NA + Sbjct: 302 KPKEIFIPGDIDQESVEA-----LVGDGVKVFKPQRGEKKQLVNLATKNARVSLTQKFDL 356 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 Q +++ K +P RIE +DNS+IMG S V MVV K +YRK Sbjct: 357 LEKDLAKTQGAVENLGKLMGIPTPV-RIESFDNSNIMGTSPVSAMVVFENGKPNKKEYRK 415 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V+ DD A MR V+ RR+S++ ++ + PD++I+DGG+G Sbjct: 416 YKIKT--VQGPDDYASMREVIRRRYSRVKRDG--------------LTPPDLIIMDGGQG 459 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ VL+K + I + + K K E F + + L + + + R++ Sbjct: 460 QVNVAKDVLRK-ELNLSIPVAGLQKNDKHQT-NELLFGDPLQVIDLPRQSEEFFLLHRIQ 517 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD + G+GP RK+ LL+ F ++ I +++ E + ++ Sbjct: 518 DEVHRFAITFHRQVRSKNSFSSKLDGVEGLGPKRKQKLLKHFKSMTAIQKATVEDIHAL- 576 Query: 594 GISKKIACKIYNHFHKNTS 612 GI +K+A + + + + + Sbjct: 577 GIPEKVAQALLDKLNDDNN 595 >gi|76786803|ref|YP_329921.1| excinuclease ABC subunit C [Streptococcus agalactiae A909] gi|77405386|ref|ZP_00782480.1| excinuclease ABC, C subunit [Streptococcus agalactiae H36B] gi|92058698|sp|Q3K0N2|UVRC_STRA1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|76561860|gb|ABA44444.1| UvrABC system, C protein [Streptococcus agalactiae A909] gi|77175968|gb|EAO78743.1| excinuclease ABC, C subunit [Streptococcus agalactiae H36B] Length = 593 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 171/615 (27%), Positives = 294/615 (47%), Gaps = 41/615 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D G ++YVGKA NL+ R++SY H +++T + ++S+I + + Sbjct: 8 KLELLPDSPGCYLHKDKNGTIIYVGKAKNLKNRVRSYFHGSHNT-KTELLVSEIEDFEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + EALLLE N+I+ P++NI L+DDKS+PYI IT+ + P L R G+Y Sbjct: 67 VTTSNTEALLLEINLIQENMPKYNIRLKDDKSYPYIKITN-ERYPRLMITRQVKKSDGTY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ A + L R F + C + + C + + +C+ + + + Sbjct: 126 FGPYPDSGAATEIKRLLDRLFPFKKCTNP----ANKVCFYYHLGQCNAHTVCQTNKAYWD 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + K+FL+G ++ + + M A + ++E A +RD + A+S ++ I+ Sbjct: 182 SLREDVKQFLNGKDNKIVNGLTEKMKSAAMTMEFERAAEYRDLIEAISLLRTKQRVIHQD 241 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 M D F + +K C+Q F G+ +E + T Sbjct: 242 MKDRDVFGYFVDKGWMCVQVFFVRNGKLIQRDVNMFPYYNEPEEDFLTYIGQFYQDTKHF 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ + + ++ + S+ I KI P++GEK++++ A+ NA + Sbjct: 302 LPKEVFIPQDIDAKSVETIV-------GCKIVKPQRGEKKQLVNLAIKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +++ +P RIE +DNS+I G S V MVV K YRK Sbjct: 355 LEKDIRKTHGAIENLGNLLNIPKPV-RIEAFDNSNIQGTSPVAAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + V DD A MR V+ RR+S+++K+ + PD++++DGG+G Sbjct: 414 FKIKT--VIGPDDYASMREVIHRRYSRVLKDG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+ + + I I + K K E F E + L + + R++ Sbjct: 458 QVNIARDVI-ENQLGLAIPIAGLQKNDKHQT-HELLFGDPLEVVELPRNSEEFFLLHRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+LL++ F ++ I ++ E + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSKLDGITGLGPKRKQLLMKHFKSLPNIQKADIEDIIM-C 574 Query: 594 GISKKIACKIYNHFH 608 GI + +A + + + Sbjct: 575 GIPRTVAESLRDSLN 589 >gi|297587656|ref|ZP_06946300.1| excision endonuclease subunit UvrC [Finegoldia magna ATCC 53516] gi|297574345|gb|EFH93065.1| excision endonuclease subunit UvrC [Finegoldia magna ATCC 53516] Length = 608 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 191/619 (30%), Positives = 317/619 (51%), Gaps = 28/619 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 +++P PGVY M D ++YVGKA +L++R+ Y S+ ++ M+S + + Sbjct: 7 ELQKVPHKPGVYIMHDKNDEIIYVGKAIDLRRRVGQYFDSSQKLAKVAAMVSHVEYFEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 + E EAL+LE+N+IK+ P++NI+LRDDK +PYI IT+ K P + K R + Y Sbjct: 67 IVNNECEALVLESNLIKKNSPKYNIVLRDDKQYPYIKITN-EKFPRVLKTRRVLKDKAKY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSEK 179 FGPF + AV I+ + T+ +R+C + + + RPCL + I RC G C ++ E Sbjct: 126 FGPFPNAYAVNDIIDLIHETYKIRTCNLNFDKGQTLKRPCLNYYINRCDGMCVYDVDEED 185 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + + E + FL+G L +K+ M A+ ++E A RD +A + I + Sbjct: 186 YNKELLEVENFLNGREDELTKKLTDKMMAASKNLNFELAAKFRDSIANIQVILEKQNITN 245 Query: 240 N---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 +D S+ C+Q F G+ F + E +N I+ F +QFY D Sbjct: 246 TKGLDLDMISMAREAETVCVQVFFMRNGKIIERQHFIIDNKYEESNEHIVGEFFKQFYID 305 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR----S 351 P+ IL + E+ L+E ++ G KV+I +PK+G K ++E +NA Sbjct: 306 LTYVPKQILTDIDIEDRELIEEMLTEKKGSKVEIKIPKRGNKTDLLEMVRVNAKEGLDKY 365 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 ++ L E + + + D + I RIE YD S+ G +VG M+V Sbjct: 366 ISRHLKRERNRENAILDLQDITGVKPID-RIECYDISNTSGVDSVGSMIVFKNGTKSPKD 424 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YRKF + V+ DD A + VL RRF +L+ +++ ++ SF P ++++DG Sbjct: 425 YRKFKIKT--VEGADDYASHKEVLTRRFRRLLDSDK--------KDNSFDEMPSIILMDG 474 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GKGQ++ A+ VL + N++ I I+ + K K + + + + L + P+ + Sbjct: 475 GKGQVNIAKEVLDEFNLD--IPILGLVKDDKHRTRG---IIYENDEIRLKVNTPLYRLLF 529 Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +++E HRFAI HRK +K S LD I IG RK+ L++ F T+ I ++S E L Sbjct: 530 AIQEETHRFAINYHRKLHEKNFKKSELDNIKLIGKKRKKALMKHFKTLDRIKKASVEELC 589 Query: 591 SIEGISKKIACKIYNHFHK 609 ++G+++K A I N+F + Sbjct: 590 EVDGMNEKAAENIVNYFKQ 608 >gi|210621611|ref|ZP_03292724.1| hypothetical protein CLOHIR_00669 [Clostridium hiranonis DSM 13275] gi|210154676|gb|EEA85682.1| hypothetical protein CLOHIR_00669 [Clostridium hiranonis DSM 13275] Length = 607 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 194/625 (31%), Positives = 316/625 (50%), Gaps = 40/625 (6%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFT 61 +Q+PE PGVY M D V+YVGKA L+ R++ Y S+ NH+ ++ M+ I + + Sbjct: 8 LKQLPEQPGVYIMKDAFDNVIYVGKAVVLKNRVRQYFQSSKNHSSKVKSMVKNIRSFEYI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 +T +E EAL+LE N+IKR KP++N+LLRDDK++PYI +T P + K R + + Y Sbjct: 68 ITDSETEALILECNLIKRYKPKYNVLLRDDKTYPYIKVTTNEDFPRVIKVRKVAKDKAKY 127 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCA---DSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 FGP+ ++ AV T+ ++ T+ +R+C D +++ RPCL + IK+C GPCTG++S E Sbjct: 128 FGPYTNITAVNDTLEVIRDTYPIRTCKIDIDRAIKNKMRPCLNYHIKKCMGPCTGKVSKE 187 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + + E LSG L E + M + +E A ++RD++ +L + Sbjct: 188 EYRQMIDEVIMCLSGKEEKLVEILTEKMQKCAADFRFEEAAVYRDKIKSLEEMVQKQKID 247 Query: 239 YN----RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 N D ++ N AC+Q F G+ G F L+ +S+ IL F +QFY Sbjct: 248 TNTLDLNQDIIAMARANNEACVQIFFVRNGKIVGREHFILEGVMDSSRESILGSFAKQFY 307 Query: 295 TDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS-- 351 ++ P+ I++ +E E+ +LE + G KV I VP++GEK+ ++E NA Sbjct: 308 MEQEYIPKEIIIEDEIEDQGILEDILTAKKGQKVVIRVPQKGEKKSLVEMVRKNALEYLE 367 Query: 352 --HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 L++ L +P RIE +D S+I G ++G MVV K Sbjct: 368 KFSDMNKRKYEKSIGALEELKNLLELEELPIRIESFDISNIQGVDSIGSMVVYTNGKKDK 427 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 +YR++ + V +D M +LERR + PD+++L Sbjct: 428 KEYRRYKIKT--VIGPNDYDSMAEILERRIKH-------------------GNLPDLILL 466 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ+ A + V + ++ I + + K K + + + L+ + F Sbjct: 467 DGGKGQVGAVRKVFDRYGID--IPLWGMYKDDKHRTKG---LINETREIELSKTSNLYRF 521 Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 + +++E H +AIT HR R KK S LD I G+G RK+ LL F T++ I ++ E Sbjct: 522 VAGIQEEVHNYAITYHRSLRDKKLTKSELDNIPGVGDKRKKALLAKFKTLEGIKNATLEE 581 Query: 589 LASIEGISKKIACKIYNHFHKNTSH 613 L E ++ +A K+Y+ F + Sbjct: 582 LEDTETMNSTVAEKVYDFFREKEQG 606 >gi|86143737|ref|ZP_01062113.1| excinuclease ABC, C subunit [Leeuwenhoekiella blandensis MED217] gi|85829780|gb|EAQ48242.1| excinuclease ABC, C subunit [Leeuwenhoekiella blandensis MED217] Length = 601 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 174/629 (27%), Positives = 299/629 (47%), Gaps = 52/629 (8%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + +P PGVYQ D G++LYVGKA NL+KR+ SY + + R ++ +I I+ Sbjct: 8 IQLKTLPSSPGVYQYYDKKGKLLYVGKAKNLKKRVSSYFNKKHDNARTHMLVKKIVTIKH 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V +E +ALLLE NMIK +P++N++L+DDKS+P+I I + P ++ R Sbjct: 68 IVVNSETDALLLENNMIKNYQPKYNVMLKDDKSYPWICI-KNERFPRVFPTRRLIKDGSE 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-----HRTRPCLLFQIKRCSGPCTGEI 175 Y+GP+ S+ V ++ ++ + LR+C + + + + CL + + C GPC +I Sbjct: 127 YYGPYTSMKTVHTLLDLIKGLYPLRTCNYDLSKEKIESGKYKVCLEYHLGNCLGPCEDKI 186 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 S++ Y + + + + G + + M ++E A ++++ L Q + Sbjct: 187 SAKTYHDNIDAIRDIVKGNFKDSLHRFRSQMKAHAEAMEFEDAQRIKEKIEVLEGYQAKS 246 Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 N +D FS+ ++ + G + T LK + ++A++L+ + + Sbjct: 247 TVVNPSINNVDVFSIVSDEGYGYVNFLQLSHGAIIRSHTLELKKKLDESDAELLAIGIIE 306 Query: 293 FYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 I + + + +++TVPK G+K++I+E + NA Sbjct: 307 IRQRFNSQSSEIYVPFDLDLGD------------GIRVTVPKLGDKKRIVELSERNAKYF 354 Query: 352 HTQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405 ++ + ++ L P+ IE +DNS+I G + V VV + Sbjct: 355 RMERFKQTKIVDPDRHVNRLMAQMKSDLRLSVEPRHIECFDNSNIQGTNPVAACVVFKDG 414 Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465 K YRKFN+ V DD A M V+ RR+ +L+ +E L P Sbjct: 415 KPSKKDYRKFNIKT--VTGPDDFASMEEVVFRRYRRLLNEDEPL--------------PQ 458 Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525 ++I+DGGKGQLS+ L+ L + +I II IAK + E F+ L L+ + Sbjct: 459 LIIVDGGKGQLSSGVKALEALGLRGKIAIIGIAKRLE-----ELFYPGDSIPLYLDKKSE 513 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 L IQ+LR+EAHRF IT HR +R K A + L+ I GIG LL+ F +V + ++ Sbjct: 514 TLKVIQQLRNEAHRFGITFHRNQRSKAAINTELETIPGIGEKTVIELLRHFRSVSKVKKA 573 Query: 585 SPETLASIEGISKKIACKIYNHFHKNTSH 613 S L+ + I A I NH+ ++ + Sbjct: 574 SAAALSEV--IGPAKAKIIINHYQQSANE 600 >gi|315656605|ref|ZP_07909492.1| excinuclease ABC subunit C [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492560|gb|EFU82164.1| excinuclease ABC subunit C [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 693 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 187/690 (27%), Positives = 307/690 (44%), Gaps = 85/690 (12%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + ++P PGVY+ D RV+YVGKA NL+ R+ SY R M++ ++ + Sbjct: 8 KASEIPTQPGVYRWRDERNRVIYVGKAKNLRNRLTSYFVDPARLHPRTAKMVATAASVSW 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V +EVEAL LE IK P+FN++ +DDKS+PY +T + P + R + Sbjct: 68 VVVGSEVEALTLEYTWIKEHDPKFNVMFKDDKSYPYFAVTMNQEYPRMGVLRTAHQRGVR 127 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISS 177 YFGP+ +V A+ +T++ LQ F +R+C+D VF R CLL I RC+ PC G +S+ Sbjct: 128 YFGPYTAVWAIRQTLDLLQTVFPVRTCSDGVFARAQAANRACLLGYIGRCAAPCIGRVSA 187 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 ++ E + F+SG + +I M +E A RD+L AL + N + Sbjct: 188 AQHRELAEKVCDFMSGRDAGFLREIETAMWDDAQAYRFEEAARKRDQLEALRKVLEKNAA 247 Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D F+L ++ +Q + G+ RG + + + +++ L Q Y Sbjct: 248 VLSDDTDADLFALEADELQVSVQVFYVRAGRIRGQRGWVSAREEDLDEPSLMARALEQIY 307 Query: 295 TDKP------------------------------CPENILLSEEAEETSLLEISFFKQYG 324 + P+ IL+S + +L+ G Sbjct: 308 GEAAADFAHEGGVARPRRVGPSSANDTAHFDTSVIPKEILVSVSPADVGMLQRWLGALRG 367 Query: 325 YKVKITVPKQGEKRKIIEQALINA----HRSHTQKLSTEISHQMILKDFTKKFALPHIPK 380 +V I VP++G KR+ + + +NA T++ + L D + + Sbjct: 368 SQVSIRVPQRGAKREALSRVQLNAVEGLRLYKTRRARDLTQRNLALNDLGRLLEIDPPL- 426 Query: 381 RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT-QDDCAMMRMVLERRF 439 RIE YD SH G +G MVV + K+ YRKF++ D DD M VL RRF Sbjct: 427 RIECYDISHTQGTFQMGSMVVFEDGAPRKDAYRKFSIRGEDGTGTPDDTTAMNEVLRRRF 486 Query: 440 SQLIKNEEN-----------------------------------LNFHPKKQEYSFPSWP 464 +LI+ E +++ F P Sbjct: 487 ERLIQEENGQSSAQSEPNATTTARGTDLVETKHPSPQTTPSVALPPLGTEREPRRFSYRP 546 Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524 D+V++DG Q+ AA+ + ++ V + I +I +AK + E + V ++ Sbjct: 547 DLVVVDGALPQVHAARAAMDEVGVWD-IPVIGLAKRLE-----EVWRVDDDFPVIFPRTS 600 Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583 LY +Q LRDE+HRFAI+ HR++R + S LD G+GP +++ LL+ FG+VK + Sbjct: 601 EALYLLQYLRDESHRFAISAHRQKRARAMTRSILDAAPGVGPAKQKALLRHFGSVKRLRE 660 Query: 584 SSPETLASIEGISKKIACKIYNHFHKNTSH 613 +S +A + G K A + + + + Sbjct: 661 ASAAEIAEVPGFGLKSAENLVAFLNNSGNS 690 >gi|253751548|ref|YP_003024689.1| UvrABC system protein C [Streptococcus suis SC84] gi|251815837|emb|CAZ51445.1| UvrABC system protein C [Streptococcus suis SC84] Length = 594 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 174/614 (28%), Positives = 299/614 (48%), Gaps = 41/614 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y + G+++YVGKA NL+ R++SY + T + ++++I + F Sbjct: 8 KLELLPDSPGCYLHKNKYGKIIYVGKAKNLRNRVRSYFRGAHDT-KTEALVAEIADFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+I+ KPR+NI+L+DDKS+P+I IT K + P L R G Y Sbjct: 67 VTDSNIEALLLEINLIQENKPRYNIMLKDDKSYPFIKIT-KERHPRLLITRQIKKDGGQY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A +T+ L+R + R C ++ CL + + +C S Y Sbjct: 126 FGPYPDVGAANQTLKLLERLYPFRKCKLPENKY----CLYYHLGQCLAHGDNMPSLSDYD 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + E +FL+G + + +++ M A ++E A +RD L ++S ++ + + Sbjct: 182 KMAKEVAQFLTGHDDKIIKEVQDKMKAAAGNLEFEKAAEYRDVLQSISTLRTKQRVMAHD 241 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ +++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERNVNLFPYYNDAGEDFLTYIGQFYRDQQHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ ++ ++ + K P++GEK+++I A NA + Sbjct: 302 IPSEVLIPQDIDQEAVEALVDTKVIK-------PQRGEKKQLINLATKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +++ + +P RIE +DNS+IMG S V MVV K +YRK Sbjct: 355 LEKNLEKTYGAVENIGQLLGIPTPV-RIEAFDNSNIMGTSPVSAMVVFENGVPNKKEYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + N V+ DD A MR VL+RR+S+++++ + PD++I+DGG+G Sbjct: 414 Y--KINTVEGPDDYASMREVLQRRYSRVLRDG--------------LTPPDLIIIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L + + R++ Sbjct: 458 QVNVAKQVIEQ-ELGMSIPIAGLQKNDKHQT-HELLFGNPLEVVELPRNSQEFFLLHRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAI HR+ R K ++S LD I G+GP RK+ L++ F ++ I +S + +A Sbjct: 516 DEVHRFAIEFHRQVRSKNSFSSKLDGIEGLGPKRKQTLMKHFKSIGSIQSASLQEIAEA- 574 Query: 594 GISKKIACKIYNHF 607 G+ K+A K+ Sbjct: 575 GVPYKVAEKVKESL 588 >gi|124025708|ref|YP_001014824.1| excinuclease ABC subunit C [Prochlorococcus marinus str. NATL1A] gi|189038073|sp|A2C249|UVRC_PROM1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|123960776|gb|ABM75559.1| Excinuclease ABC subunit C (UvrC) [Prochlorococcus marinus str. NATL1A] Length = 640 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 199/631 (31%), Positives = 317/631 (50%), Gaps = 29/631 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFT 61 + +P PG Y M D R+LYVGK+ L+ R++SY S N + RI+ M+ Q+ +I Sbjct: 17 LKDIPNDPGCYLMKDGEDRLLYVGKSKKLRNRVRSYFRSGNELSPRISLMVRQVADIELI 76 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI--QG 119 VT E EAL LE+N+IK +P FN+LL+DDK +PY+ IT K P ++ R + Sbjct: 77 VTDNESEALTLESNLIKSHQPYFNVLLKDDKKYPYVCITWGDKYPRIFLTRKRRQRQLKD 136 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 Y+GP+ V + KT+ S+++ F LR +++ RT CL + I RC G C EISSE Sbjct: 137 KYYGPYVDVYLLRKTLFSIKKLFPLRQRRIPLYKDRT--CLNYSIGRCPGVCQEEISSED 194 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + + G L+ + + M + +E A RD+L + + I Sbjct: 195 YKNTLKRVEMIFQGRTDELRILLEKQMISFSESLKFEEAGSVRDQLKGIDRLYESQKMII 254 Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D ++ +N++ +Q G+ G +F + ++ +QIL + Y+ Sbjct: 255 PDSSVCRDIIAMASEENISSVQIFQMRSGKLIGRLGYFSDNSNFNS-SQILQQVIENHYS 313 Query: 296 DKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 + P IL+ + L+ + KV I VPK+ K +II+ NA+ Sbjct: 314 NVDPVEIPSEILVQHQLVNNILISDWLSEIKKQKVNINVPKRSRKAEIIKLVEKNANLEL 373 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + + + L D T L +IPKRIE YD SHI G AV VV + + Y Sbjct: 374 QRIKQSHDKNLVELDDLTNILDLENIPKRIECYDISHIQGSDAVASQVVFIDGIAARQHY 433 Query: 413 RKFNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEEN--------LNFHPKKQEYSFPS 462 R++ + ++K DD M V+ RRF + + +E N + Sbjct: 434 RRYKIKSPNIKIGHSDDFESMAEVITRRFRRWARFKEEGGDINALLSNQSSVLDNLNLND 493 Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522 WPD+V++DGGKGQLS+ L++L ++ + +IS+AK + E F ++LV Sbjct: 494 WPDLVVIDGGKGQLSSVVAALEELKLDQNLNVISLAKKKE-----EVFIPNVKQSLVTES 548 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMI 581 P + ++RLRDEAHRFAIT HR++R + S L+EI G+GP R +LLL+ F +++ I Sbjct: 549 NQPGMLLLRRLRDEAHRFAITFHRQKRSQRMKRSQLNEIPGLGPQRIKLLLEHFRSIEAI 608 Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNTS 612 ++ L+S G+ + A I N+FH + + Sbjct: 609 QMATFSELSSTPGLGRSTAVVIRNYFHPDKN 639 >gi|292558195|gb|ADE31196.1| excinuclease ABC, subunit C [Streptococcus suis GZ1] Length = 622 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 174/614 (28%), Positives = 299/614 (48%), Gaps = 41/614 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y + G+++YVGKA NL+ R++SY + T + ++++I + F Sbjct: 36 KLELLPDSPGCYLHKNKYGKIIYVGKAKNLRNRVRSYFRGAHDT-KTEALVAEIADFEFI 94 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+I+ KPR+NI+L+DDKS+P+I IT K + P L R G Y Sbjct: 95 VTDSNIEALLLEINLIQENKPRYNIMLKDDKSYPFIKIT-KERHPRLLITRQIKKDGGQY 153 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A +T+ L+R + R C ++ CL + + +C S Y Sbjct: 154 FGPYPDVGAANQTLKLLERLYPFRKCKLPENKY----CLYYHLGQCLAHGDNMPSLSDYD 209 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + E +FL+G + + +++ M A ++E A +RD L ++S ++ + + Sbjct: 210 KMAKEVAQFLTGHDDKIIKEVQDKMKAAAGNLEFEKAAEYRDVLQSISTLRTKQRVMAHD 269 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ +++ + Sbjct: 270 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERNVNLFPYYNDAGEDFLTYIGQFYRDQQHL 329 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ ++ ++ + K P++GEK+++I A NA + Sbjct: 330 IPSEVLIPQDIDQEAVEALVDTKVIK-------PQRGEKKQLINLATKNARVSLEQKFNL 382 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +++ + +P RIE +DNS+IMG S V MVV K +YRK Sbjct: 383 LEKNLEKTYGAVENIGQLLGIPTPV-RIEAFDNSNIMGTSPVSAMVVFENGVPNKKEYRK 441 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + N V+ DD A MR VL+RR+S+++++ + PD++I+DGG+G Sbjct: 442 Y--KINTVEGPDDYASMREVLQRRYSRVLRDG--------------LTPPDLIIIDGGQG 485 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L + + R++ Sbjct: 486 QVNVAKQVIEQ-ELGMSIPIAGLQKNDKHQT-HELLFGNPLEVVELPRNSQEFFLLHRIQ 543 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAI HR+ R K ++S LD I G+GP RK+ L++ F ++ I +S + +A Sbjct: 544 DEVHRFAIEFHRQVRSKNSFSSKLDGIEGLGPKRKQTLMKHFKSIGNIQSASLQEIAEA- 602 Query: 594 GISKKIACKIYNHF 607 G+ K+A K+ Sbjct: 603 GVPYKVAEKVKESL 616 >gi|78212893|ref|YP_381672.1| excinuclease ABC subunit C [Synechococcus sp. CC9605] gi|119367855|sp|Q3AJW5|UVRC_SYNSC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|78197352|gb|ABB35117.1| excinuclease ABC, C subunit [Synechococcus sp. CC9605] Length = 661 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 188/633 (29%), Positives = 300/633 (47%), Gaps = 29/633 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFT 61 +++P PG Y M D R+LYVGK+ L+ R++SY S + + RI M Q+ I F Sbjct: 20 LKEIPAEPGCYLMRDCDDRILYVGKSKALRSRVRSYFRSRHDLSPRIRLMTRQVCEIEFI 79 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ--G 119 VT +E EAL+LE+N+IK +P FN+LL+DDK +PY+ IT P ++ R Sbjct: 80 VTDSEAEALVLESNLIKNHQPHFNVLLKDDKKYPYLCITWSEAYPRIFITRRRRFRSPLD 139 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++GP+ V + +T+ ++R F LR ++ RT CL + I RC G C +ISS Sbjct: 140 RFYGPYVDVGLLRRTLFLVKRVFPLRQRPRPMYPDRT--CLNYSIGRCPGVCQEKISSVD 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + + G + L+ + M + + DYESA RD+L L + Sbjct: 198 YHRTLRKVAMVFQGRSDELQHLLQEQMERYAERMDYESAARVRDQLQGLDQLTADQKMSL 257 Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D +L ++ LA +Q G+ G + S IL + + Y+ Sbjct: 258 PDSSVSRDVLALAFDERLAAVQLFQMRAGKLVGRLGYTAD-ASGLEPGLILQRVIEEHYS 316 Query: 296 DKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 P +L+ + L+E +Q +V+I P++ +K +IE NA Sbjct: 317 QVDSVEVPPELLVQHALPQQKLMEDWLTEQRERRVQIHCPQRQQKADLIELVQRNAEFEL 376 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + + +D + LP P+RIE YD SHI G AV VV + K Y Sbjct: 377 LRAKQGQEKQSLATEDLAQLLELPTPPRRIEGYDISHIQGSDAVASQVVFIDGLPAKQHY 436 Query: 413 RKFNLHPNDV---KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK-------QEYSFPS 462 RK+ + + + + D AM ++ R E ++ + Q Sbjct: 437 RKYKIRSSSIRAGHSDDFMAMAEIMRRRFRRWARAKAEGMDVGALRHKGGSALQTDGLND 496 Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522 WPDVV++DGGKGQLSA L++L++ + + S+AK + E F + + L Sbjct: 497 WPDVVMIDGGKGQLSAVMEALRELDLHEDLNVCSLAKQRE-----EVFLPGESQPLESEP 551 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMI 581 + ++RLRDEAHRFA++ HR++R + S L +I G+GP R + LL F ++ I Sbjct: 552 DQLGVVLLRRLRDEAHRFAVSFHRQQRGERMKRSRLSDIPGVGPKRVKDLLAHFHSIDAI 611 Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +S ETL+ G+ +A I++ FH + T Sbjct: 612 QLASIETLSKAPGVGPALARDIHDFFHPSDEGT 644 >gi|303235299|ref|ZP_07321917.1| excinuclease ABC, C subunit [Finegoldia magna BVS033A4] gi|302493613|gb|EFL53401.1| excinuclease ABC, C subunit [Finegoldia magna BVS033A4] Length = 608 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 194/619 (31%), Positives = 318/619 (51%), Gaps = 28/619 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 +++P PGVY M D ++YVGKA +L++R+ Y S+ ++ M+S + + Sbjct: 7 ELQKVPHKPGVYIMHDKNDEIIYVGKAIDLRRRVGQYFDSSKKLAKVAAMVSHVEYFEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 + E EAL+LE+N+IK+ P++NI+LRDDK +PYI IT+ K P + K R + Y Sbjct: 67 IVNNECEALVLESNLIKKNSPKYNIVLRDDKQYPYIKITN-EKFPRVLKTRRVLKDKAKY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSEK 179 FGPF + AV I+ + T+ +R+C + + + RPCL + I RC G C +++ E Sbjct: 126 FGPFPNAYAVNDIIDLIHETYKIRTCNLNFDKGQKLKRPCLNYYINRCDGMCVYDVNEED 185 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + + E + FL+G L +K+ M A+ ++E A RD +A + I + Sbjct: 186 YNKELLEVENFLNGREDELTKKLTDKMMAASKNLNFELAAKLRDSIANIQVILEKQNITN 245 Query: 240 NRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + D S+ C+Q F G+ F + E +N I+ F +QFY D Sbjct: 246 TKGLDLDMISMAREAETVCVQVFFMRNGKIIERQHFIIDNKYEESNEHIVGEFFKQFYID 305 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR----S 351 P+ IL E E+ L+E ++ G KV+I +PK+G K ++E +NA Sbjct: 306 LTYVPKQILTDIEIEDRELIEEMLTEKKGSKVEIKIPKRGNKTDLLEMVRVNAKEGLDKY 365 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 ++ L E + + + D + I RIE YD S+ G +VG M+V Sbjct: 366 ISRHLKRERNRENAILDLQDITGVKPID-RIECYDISNTSGVDSVGSMIVFKNGAKSSKD 424 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YRKF + V+ DD A R VL RRF +L+ +++ ++ SF P ++++DG Sbjct: 425 YRKFKIKT--VEGADDYASHREVLTRRFRRLLDSDK--------KDNSFDEMPSIILMDG 474 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GKGQ++ A+ VL + N++ I I+ + K K + + E + L + P+ + Sbjct: 475 GKGQVNIAKEVLNEFNLD--IPILGLVKDDKHRTRG---IIYENEEIRLKVNTPLYRLLF 529 Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +++E HRFAI HRK +K S LD I IG RK+ L++ F T+ I ++S E L Sbjct: 530 AIQEETHRFAINYHRKLHEKNFKKSELDNIKLIGEKRKKALMKHFKTLDRIKKASVEELC 589 Query: 591 SIEGISKKIACKIYNHFHK 609 ++G+++K A I N+F + Sbjct: 590 EVDGMNEKAAENIVNYFKQ 608 >gi|77407834|ref|ZP_00784587.1| excinuclease ABC, C subunit [Streptococcus agalactiae COH1] gi|77173581|gb|EAO76697.1| excinuclease ABC, C subunit [Streptococcus agalactiae COH1] Length = 583 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 171/611 (27%), Positives = 293/611 (47%), Gaps = 41/611 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y D G ++YVGKA NL+ R+KSY H +++T + ++S+I + + VT + Sbjct: 2 LPDSPGCYLHKDKNGTIIYVGKAKNLKNRVKSYFHGSHNT-KTELLVSEIEDFEYIVTTS 60 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 EALLLE N+I+ P++NI L+DDKS+PYI IT+ + P L R G+YFGP+ Sbjct: 61 NTEALLLEINLIQENMPKYNIRLKDDKSYPYIKITN-ERYPRLMITRQVKKSDGTYFGPY 119 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 A + L R F + C + + C + + +C+ + + + Sbjct: 120 PDSGAATEIKRLLDRLFPFKKCTNP----ANKVCFYYHLGQCNAHTVCQTNKAYWDSLRE 175 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 + K+FL+G ++ + + M A + ++E A +RD + A+S ++ I+ M Sbjct: 176 DVKQFLNGKDNKIVNGLTEKMKSAAMTMEFERAAEYRDLIEAISLLRTKQRVIHQDMKDR 235 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F + +K C+Q F G+ +E + T P+ Sbjct: 236 DVFGYFVDKGWMCVQVFFVRNGKLIQRDVNMFPYYNEPEEDFLTYIGQFYQDTKHFLPKE 295 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358 + + ++ + S+ I KI P++GEK++++ A+ NA + Sbjct: 296 VFIPQDIDAKSVETIV-------GCKIVKPQRGEKKQLVNLAIKNARVSLQQKFDLLEKD 348 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 +++ +P RIE +DNS+I G S V MVV K YRKF + Sbjct: 349 IRKTHGAIENLGNLLNIPKPV-RIEAFDNSNIQGTSPVAAMVVFVNGNPSKKDYRKFKIK 407 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V DD A MR V+ RR+S+++K+ + PD++++DGG+GQ++ Sbjct: 408 T--VIGPDDYASMREVIHRRYSRVLKDG--------------LTPPDLIVIDGGQGQVNI 451 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ V+ + + I I + K K E F E + L + + R++DE H Sbjct: 452 ARDVI-ENQLGLAIPIAGLQKNDKHQT-HELLFGDPLEVVELPRNSEEFFLLHRIQDEVH 509 Query: 539 RFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ R K ++S LD I G+GP RK+LL++ F ++ I ++ E + GI + Sbjct: 510 RFAITFHRQLRSKNSFSSKLDGITGLGPKRKQLLMKHFKSLPNIQKADIEDIIM-CGIPR 568 Query: 598 KIACKIYNHFH 608 +A + + + Sbjct: 569 TVAESLRDSLN 579 >gi|319757980|gb|ADV69922.1| excinuclease ABC subunit C [Streptococcus suis JS14] Length = 610 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 174/614 (28%), Positives = 299/614 (48%), Gaps = 41/614 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y + G+++YVGKA NL+ R++SY + T + ++++I + F Sbjct: 24 KLELLPDSPGCYLHKNKYGKIIYVGKAKNLRNRVRSYFRGAHDT-KTEALVAEIADFEFI 82 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+I+ KPR+NI+L+DDKS+P+I IT K + P L R G Y Sbjct: 83 VTDSNIEALLLEINLIQENKPRYNIMLKDDKSYPFIKIT-KERHPRLLITRQIKKDGGQY 141 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A +T+ L+R + R C ++ CL + + +C S Y Sbjct: 142 FGPYPDVGAANQTLKLLERLYPFRKCKLPENKY----CLYYHLGQCLAHGDNMPSLSDYD 197 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + E +FL+G + + +++ M A ++E A +RD L ++S ++ + + Sbjct: 198 KMAKEVAQFLTGHDDKIIKEVQDKMKAAAGNLEFEKAAEYRDVLQSISTLRTKQRVMAHD 257 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ +++ + Sbjct: 258 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERNVNLFPYYNDAGEDFLTYIGQFYRDQQHL 317 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ ++ ++ + K P++GEK+++I A NA + Sbjct: 318 IPSEVLIPQDIDQEAVEALVDTKVIK-------PQRGEKKQLINLATKNARVSLEQKFNL 370 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +++ + +P RIE +DNS+IMG S V MVV K +YRK Sbjct: 371 LEKNLEKTYGAVENIGQLLGIPTPV-RIEAFDNSNIMGTSPVSAMVVFENGVPNKKEYRK 429 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + N V+ DD A MR VL+RR+S+++++ + PD++I+DGG+G Sbjct: 430 Y--KINTVEGPDDYASMREVLQRRYSRVLRDG--------------LTPPDLIIIDGGQG 473 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L + + R++ Sbjct: 474 QVNVAKQVIEQ-ELGMSIPIAGLQKNDKHQT-HELLFGNPLEVVELPRNSQEFFLLHRIQ 531 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAI HR+ R K ++S LD I G+GP RK+ L++ F ++ I +S + +A Sbjct: 532 DEVHRFAIEFHRQVRSKNSFSSKLDGIEGLGPKRKQTLMKHFKSIGNIQSASLQEIAEA- 590 Query: 594 GISKKIACKIYNHF 607 G+ K+A K+ Sbjct: 591 GVPYKVAEKVKESL 604 >gi|225870698|ref|YP_002746645.1| UvrABC system protein C [Streptococcus equi subsp. equi 4047] gi|254764944|sp|C0M890|UVRC_STRE4 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|225700102|emb|CAW94194.1| UvrABC system protein C [Streptococcus equi subsp. equi 4047] Length = 594 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 169/614 (27%), Positives = 285/614 (46%), Gaps = 41/614 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D AG ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPDSPGCYLHKDKAGTIIYVGKAKNLRNRVRSYFRGSHDT-KTELLVSEIADFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + EALLLE N+I+ P++NI L+DDKS+P+I IT+ P L R G Y Sbjct: 67 VTGSNTEALLLEINLIQENMPKYNIKLKDDKSYPFIKITN-EPFPRLLITRQIKKNDGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + L R F + C + V + C + + +C + Sbjct: 126 FGPYPDAYTATEVKKLLDRIFPFKKCKNPV----NKVCFYYHLGQCQAHTICHTDKAYWD 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 V + K+FL+G + + + + M +A+ +++E A +RD ++ ++ ++ + Sbjct: 182 SLVADVKQFLNGKDDKIIDDLRSKMLEASHNQEFERAAEYRDLISGIATMRTKQRVMSKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F + +K C+Q F G+ +E+ + Sbjct: 242 LQDRDIFGYFVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNEAEEDFLTYVGQFYSDQRHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ + + E +ET + I + P++GEK++++ A NA + Sbjct: 302 IPKEVFIPETIDETLVAAIVPARIVK-------PQRGEKKQLVALATKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 ++ + + RIE +DNS+I G S V MVV + K YRK Sbjct: 355 LEKDLRKTSGAIEHLGQLLGIEKPV-RIEAFDNSNIQGTSPVAAMVVFVDGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + V DD A MR V+ RR+S++ PD++I+DGG+G Sbjct: 414 FKIKT--VIGPDDYASMREVIYRRYSRVKHEG--------------LQAPDLIIVDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q+ AA+ V+ + + I + + K K E F + L + + R++ Sbjct: 458 QVKAARDVI-EHQLGLSIPVAGLQKNDKHQT-HELLFGNPLAVVELPRNSEEFFLLHRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K A+S LD I G+GP RK+LLL+ F ++ + ++S E + + Sbjct: 516 DEVHRFAITFHRQVRSKNAFSSKLDHIAGLGPKRKQLLLKRFKSMTALEQASLEEIQQL- 574 Query: 594 GISKKIACKIYNHF 607 GI K +A +++H Sbjct: 575 GIPKTVAEALFDHL 588 >gi|312863575|ref|ZP_07723813.1| excinuclease ABC, C subunit [Streptococcus vestibularis F0396] gi|322516531|ref|ZP_08069447.1| excinuclease ABC subunit C [Streptococcus vestibularis ATCC 49124] gi|311101111|gb|EFQ59316.1| excinuclease ABC, C subunit [Streptococcus vestibularis F0396] gi|322124919|gb|EFX96339.1| excinuclease ABC subunit C [Streptococcus vestibularis ATCC 49124] Length = 594 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 175/617 (28%), Positives = 297/617 (48%), Gaps = 39/617 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPNNPGCYLHKDKFGNIIYVGKAKNLKNRVRSYFRGSHDT-KTELLVSEIADFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+I+ P+FNI L+DDKS+P+I IT K P L R G Y Sbjct: 67 VTESNIEALLLEINLIQENMPKFNIRLKDDKSYPFIKIT-KEIYPRLLITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ A + L R F + C + + C + I +C+ + + + Sbjct: 126 FGPYPDSGAANEIKKLLDRIFPFKKCKNP----ANKVCFYYHIGQCNAHTICHTTEDYWQ 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---I 238 V + K FL+G + + ++ M + + ++E A +RD + A+S ++ Sbjct: 182 GLVEDVKNFLNGHDDKIVNQLKAKMTDMSDQMEFERAAEYRDLIEAVSTLRTKQRVIRQD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ +++ + + Sbjct: 242 MQDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDAEEDFLTYMGQFYLDSRHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ I + + ++ S+ G VK+ P++GEKR+++ A NA + Sbjct: 302 KPKEIFIPGDIDQESVEA-----LVGDGVKVFKPQRGEKRQLVNLATKNARVSLTQKFDL 356 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 Q +++ K +P RIE +DNS+IMG S V MVV K +YRK Sbjct: 357 LEKDLAKTQGAIENLGKLMGIPTPV-RIESFDNSNIMGTSPVSAMVVFENGKPNKKEYRK 415 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V+ DD A MR V+ RR+S++ ++ + PD++I+DGG+G Sbjct: 416 YKIKT--VEGPDDYASMREVIRRRYSRVKRDG--------------LTPPDLIIMDGGQG 459 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ VL+K + I + + K K E F + L + + + R++ Sbjct: 460 QVNVAKDVLRK-ELNLSIPVAGLQKNDKHQT-NELLFGDPLRVIDLPRQSEEFFLLHRIQ 517 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD + G+GP RK+ LL+ F ++ I +++ E + ++ Sbjct: 518 DEVHRFAITFHRQVRSKNSFSSKLDGVEGLGPKRKQKLLKYFKSMTAIQKATVEDIHAL- 576 Query: 594 GISKKIACKIYNHFHKN 610 GI +K+A + + + N Sbjct: 577 GIPEKVAEALLDKLNDN 593 >gi|237785564|ref|YP_002906269.1| excinuclease ABC subunit C [Corynebacterium kroppenstedtii DSM 44385] gi|237758476|gb|ACR17726.1| excinuclease ABC, subunit C [Corynebacterium kroppenstedtii DSM 44385] Length = 705 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 193/687 (28%), Positives = 315/687 (45%), Gaps = 78/687 (11%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRF 60 ++ +P PGVY D RVLYVGKA NL+ R+ +Y + H R M+ + +R+ Sbjct: 10 AAGTIPTEPGVYTFRDPEDRVLYVGKAKNLRARLSNYFQTPEHLHPRTRQMVFAASQVRW 69 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV +E EAL LE IKR PR+N++ RDDKS+P + ++ + +IP + +R Sbjct: 70 TVVASEDEALNLEYTWIKRFNPRYNVVFRDDKSYPMLAVSQRERIPRAWVYRGPRRKGVR 129 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGPF V AV +++ SL + F +R+C+ V+ RPCLL I +CS PC G IS Sbjct: 130 YFGPFPKVWAVRESLESLTQVFPVRTCSKGVYHRHELLGRPCLLGYIDKCSAPCIGRISE 189 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E + + + +G + ++ + + +M A + ++E A RD + A+ + Sbjct: 190 EDHRKLITGLCSVFAGNSRDIIKSLTADMEAAATELNFEKAAHLRDDIEAIKAVSEKQAI 249 Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT--DSESTNAQILSYFLRQ 292 + D + ++ A +Q G+ G + ++ DSE + ++ FL Q Sbjct: 250 VLPEDTDTDLIGVCADELEAAVQIFTVRRGRIHGQRAWVVERSGDSEDSIGALIREFLLQ 309 Query: 293 FYTD-------------------------KPCPENILLSEEAEETSLLEISFFKQYGYKV 327 +Y+D +P P +L+ EE E+ + + G V Sbjct: 310 YYSDEVERAQETAEETTAVEGSRVLDDVRQPVPREVLVMEEPEDITQIGEYLSGLRGAHV 369 Query: 328 KITVPKQGEKRKIIEQALINAHRSHTQKLSTE----ISHQMILKDFTKKFALPHIPKRIE 383 I VP++G+KR +++ + NA S Q + ++ + + P RIE Sbjct: 370 DIRVPQRGDKRALMDTVVRNAAESLHQHKLRRTGDLTARSAAIEAIQENLGMAEPPLRIE 429 Query: 384 IYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQL 442 D SH+ G V +VV + K+ YR++ + + DD A ++ V+ RRF + Sbjct: 430 CTDISHLQGTDVVASLVVFEDGAPKKSDYRRYKIKEAAGEGHSDDVASIKEVVRRRFLRY 489 Query: 443 IKN-----------------------------EENLNFHPKKQEYSFPSWPDVVILDGGK 473 K + N + F P + ++DGG Sbjct: 490 KKGSTEVPDDGAVADSIAAEESKLAPSEVAEVDTNADLADPSAAKRFAYSPQLFVVDGGA 549 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 Q++AAQ VL +L + + +T+ IAK + E + + ++L R LY Q + Sbjct: 550 PQVNAAQEVLDELGITD-VTLCGIAKRLE-----EVWLPHEEFPVILPRRSEGLYLFQNI 603 Query: 534 RDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDEAHR AIT R RR + S LD I G+G RK LL++FG+V I ++S + L + Sbjct: 604 RDEAHRVAITYQRSRRTGRLRQSELDNIAGLGEKRKADLLKTFGSVAQIKKASIDDLTTA 663 Query: 593 EGISKKIACKIYNHFHKNT---SHTPT 616 GI +A +Y H + S PT Sbjct: 664 NGIGPALAALVYEGLHGKSDQDSDGPT 690 >gi|189501493|ref|YP_001957210.1| excinuclease ABC subunit C [Candidatus Amoebophilus asiaticus 5a2] gi|189496934|gb|ACE05481.1| excinuclease ABC, C subunit [Candidatus Amoebophilus asiaticus 5a2] Length = 596 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 192/618 (31%), Positives = 310/618 (50%), Gaps = 48/618 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVT 63 ++P PGVY + +++YVGKA +L+KR+ SY + N + + M+ +I I FT+ Sbjct: 13 KLPNQPGVYFFYNKQQQIIYVGKAKDLKKRVSSYFNKNQQDNLKTRRMVEEIAAISFTIV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E EALLLE N+IKR +PR+NILL+DDKSFPYI IT + + P + R G Y+G Sbjct: 73 NSEYEALLLENNLIKRFQPRYNILLKDDKSFPYICIT-RERFPKVITTRQPGAKLGQYYG 131 Query: 124 PFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 PF + + + ++ ++ + LR+C +++ +H+ + CL + I C GPC G + E Sbjct: 132 PFTDLKNMYQILDLIKSLYTLRTCNYNLLEENICKHKFKVCLEYHIGHCKGPCEGLQTEE 191 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 Y + + + + FL G + +K+ M+QA DY++A +++++AAL + Q+ + Sbjct: 192 AYNQDIQQIEHFLKGNINAVKKHFKEKMSQAAAAMDYKNAQAYKEKIAALENYQSKSLVV 251 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 +D F++ + A I G T +K E + IL + F Sbjct: 252 NPQVGNLDVFAIVSDAKAAFISYLQIKEGAIICTQNTEIKKQLEELDEDILPLIILHFRE 311 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRS 351 + +L K +TVP+ G+K+K++E A N + Sbjct: 312 KYASNPSEILVNIP----------IATTFDKAMLTVPRIGDKKKLVELATKNVLFLKREA 361 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 ++ + L L +P IE +DNS+I G V MVV K + Sbjct: 362 LLRQEDNQNRANKTLVLLQHDLQLKDLPLHIECFDNSNIQGTHPVAAMVVFQHGKPAKKE 421 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YR FN+ V DD A MR ++ RR+ +LI+ + L PD++++DG Sbjct: 422 YRHFNIKT--VVGPDDFASMREIVTRRYRRLIEENQKL--------------PDLIVIDG 465 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GKGQL AA L++L + +I II IAK + E +F + + ++ + P L +Q Sbjct: 466 GKGQLGAAVAALQELGIYGQIPIIGIAKRLE-----EIYFPEDSYPIHISKQSPSLKLLQ 520 Query: 532 RLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 ++R+EAHRFAIT HR +R K + S L+ I G+G LLQ FG+V+ I +S + LA Sbjct: 521 QIRNEAHRFAITFHRDKRSKTSLKSQLESIPGVGEKTITTLLQHFGSVQNIKEASLKALA 580 Query: 591 SIEGISKKIACKIYNHFH 608 S + K A +I H Sbjct: 581 S--QVGNKRAIQIKEHLK 596 >gi|146318403|ref|YP_001198115.1| excinuclease ABC subunit C [Streptococcus suis 05ZYH33] gi|145689209|gb|ABP89715.1| Nuclease subunit of the excinuclease complex [Streptococcus suis 05ZYH33] Length = 622 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 174/614 (28%), Positives = 298/614 (48%), Gaps = 41/614 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y + G+++YVGKA NL+ R++SY + T + ++++I + F Sbjct: 36 KLELLPDSPGCYLHKNKYGKIIYVGKAKNLRNRVRSYFRGAHDT-KTEALVAEIADFEFI 94 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+I+ KPR+NI+L+DDKS+P+I IT K + P L R G Y Sbjct: 95 VTDSNIEALLLEINLIQENKPRYNIMLKDDKSYPFIKIT-KERHPRLLITRQIKKDGGQY 153 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A +T+ L+R + R C ++ CL + + +C S Y Sbjct: 154 FGPYPDVGAANQTLKLLERLYPFRKCKLPENKY----CLYYHLGQCLAHGDNMPSLSDYD 209 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + E +FL+G + + +++ M A ++E A +RD L ++S ++ + + Sbjct: 210 KMAKEVAQFLTGHDDKIIKEVQDKMKAAAGNLEFEKAAEYRDVLQSISTLRTKQRVMAHD 269 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ +++ + Sbjct: 270 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERNVNLFPYYNDAGEDFLTYIGQFYRDQQHL 329 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ ++ ++ + K P+ GEK+++I A NA + Sbjct: 330 IPSEVLIPQDIDQEAVEALVDTKVIK-------PQLGEKKQLINLATKNARVSLEQKFNL 382 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +++ + +P RIE +DNS+IMG S V MVV K +YRK Sbjct: 383 LEKNLEKTYGAVENIGQLLGIPTPV-RIEAFDNSNIMGTSPVSAMVVFENGVPNKKEYRK 441 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + N V+ DD A MR VL+RR+S+++++ + PD++I+DGG+G Sbjct: 442 Y--KINTVEGPDDYASMREVLQRRYSRVLRDG--------------LTPPDLIIIDGGQG 485 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L + + R++ Sbjct: 486 QVNVAKQVIEQ-ELGMSIPIAGLQKNDKHQT-HELLFGNPLEVVELPRNSQEFFLLHRIQ 543 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAI HR+ R K ++S LD I G+GP RK+ L++ F ++ I +S + +A Sbjct: 544 DEVHRFAIEFHRQVRSKNSFSSKLDGIEGLGPKRKQTLMKHFKSIGSIQSASLQEIAEA- 602 Query: 594 GISKKIACKIYNHF 607 G+ K+A K+ Sbjct: 603 GVPYKVAEKVKESL 616 >gi|302381054|ref|ZP_07269514.1| excinuclease ABC, C subunit [Finegoldia magna ACS-171-V-Col3] gi|302311101|gb|EFK93122.1| excinuclease ABC, C subunit [Finegoldia magna ACS-171-V-Col3] Length = 608 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 192/619 (31%), Positives = 318/619 (51%), Gaps = 28/619 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 +++P PGVY M D ++YVGKA +L++R+ Y S+ ++ M+S + + Sbjct: 7 ELQKVPHKPGVYIMHDKNDEIIYVGKAIDLRRRVGQYFDSSKKLAKVAAMVSHVEYFEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 + E EAL+LE+N+IK+ P++NI+LRDDK +PYI IT+ K P + K R + Y Sbjct: 67 IVNNECEALVLESNLIKKNSPKYNIVLRDDKQYPYIKITN-EKFPRVLKTRRVLKDKAKY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSEK 179 FGPF + AV I+ + T+ +R+C + + + RPCL + I RC G C +++ E Sbjct: 126 FGPFPNAYAVNDIIDLIHETYKIRTCNLNFDKGQKLKRPCLNYYINRCDGMCVYDVNEED 185 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + + E + FL+G L +K+ M A+ ++E A RD +A + I + Sbjct: 186 YNKELLEVENFLNGREDELTKKLTDKMMAASKNLNFELAAKLRDSIANIQVILEKQNITN 245 Query: 240 N---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 +D S+ C+Q F G+ F + E +N I+ F +QFY D Sbjct: 246 TKGLDLDMISMAREAETVCVQVFFMRNGKIIERQHFIIDNKYEESNEHIVGEFFKQFYID 305 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR----S 351 P+ IL E E+ L+E ++ G KV+I +PK+G K ++E +NA Sbjct: 306 LTYVPKQILTDIEIEDRDLIEEMLTEKKGSKVEIKIPKRGNKTDLLEMVRVNAKEGLDKY 365 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 ++ L E + + + D + I RIE YD S+ G +VG M+V Sbjct: 366 ISRHLKRERNRENAILDLQDITGVKPID-RIECYDISNTSGVDSVGSMIVFKNGAKSSKD 424 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YRKF + V+ DD A R VL RRF +L+ +++ ++ SF P ++++DG Sbjct: 425 YRKFKIKT--VEGADDYASHREVLTRRFRRLLDSDK--------KDNSFDEMPSIILMDG 474 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GKGQ++ A+ VL + N++ I ++ + K K + + E + L + P+ + Sbjct: 475 GKGQVNIAKEVLNEFNLD--IPVLGLVKDDKHRTRG---IIYENEEIRLKVNTPLYRLLF 529 Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +++E HRFAI HRK +K S LD I IG RK+ L++ F T+ I ++S E L Sbjct: 530 AIQEETHRFAINYHRKLHEKNFKKSELDNIALIGEKRKKALMKHFKTLDRIKKASVEELC 589 Query: 591 SIEGISKKIACKIYNHFHK 609 ++G+++K A I ++F + Sbjct: 590 EVDGMNEKAAENIVDYFKQ 608 >gi|188587558|ref|YP_001922471.1| excinuclease ABC subunit C [Clostridium botulinum E3 str. Alaska E43] gi|251777915|ref|ZP_04820835.1| excinuclease ABC, C subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188497839|gb|ACD50975.1| excinuclease ABC, C subunit [Clostridium botulinum E3 str. Alaska E43] gi|243082230|gb|EES48120.1| excinuclease ABC, C subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 629 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 201/625 (32%), Positives = 338/625 (54%), Gaps = 19/625 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 + +P+ PGVY M + G V+YVGKA L+ R++ Y S NH+ ++ M+ I + Sbjct: 12 QLKILPDKPGVYLMKNSLGEVIYVGKAKILKNRVRQYFQNSKNHSEKVKAMVKNIAEFEY 71 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E+EAL+LE N+IK+ PR+NILL+DDK +P+I +T + P ++ R + Sbjct: 72 IITDSEMEALILECNLIKKYSPRYNILLKDDKFYPFIKVTINEEFPKIFITRKYAKDGNK 131 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ ++ +V +T+N +++ F +R+C ++ + TRPCL + IK+C+ PC G IS + Sbjct: 132 YFGPYTNIASVYETMNLIKKIFPIRTCKKAITEGGNPTRPCLNYHIKKCNAPCAGYISKD 191 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y + E + LSG N +L K+ ++M A+ ++E A RD++ A+++I Sbjct: 192 DYRNMISEVMELLSGKNKDLVNKLQKDMEYASQNLEFEKAASLRDKIIAINNIVEKQKIF 251 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D +LY ++ C+Q F G+ G F L+ + + ILS F+ FY Sbjct: 252 KSQEGDEDFINLYKDEKDCCVQVFFLRDGKVTGREHFILENSTYQEESSILSQFMISFYG 311 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351 P + + ++T +LE + G KV + VPK G K++++E NA + Sbjct: 312 GTPKVPKHIYIPKEQDTEILEEFLKIKRGSKVNVKVPKIGSKKEMLELVRNNAKLTLEQF 371 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 + L + + L++ + L IP RIE +D S+I G +VG M+V + Sbjct: 372 KEKLLMDKKINIGCLEELKELLNLDDIPNRIESFDISNIQGVDSVGSMIVFENGKAKNSD 431 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILD 470 YR+F + +VK ++ MR +LERRF+ +K +E + K F ++PD++++D Sbjct: 432 YRRFGIK--NVKNGNEYDSMREILERRFTHGLKEVKEIQERNLKFSNGKFSNFPDLIMMD 489 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ++ A+ VL KL++ +I I + K S + ++ N ++ FI Sbjct: 490 GGKGQVNVAKEVLNKLDI--QIPICGLVKDDHHSTRGIIYNNEEIII---NRSSNLMQFI 544 Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 +R++DE HRFAIT HR R K+ +S L++I +G R+R LL FG+V+ I + E L Sbjct: 545 RRVQDEVHRFAITYHRSLRDKRTLHSILEDIPNVGEKRRRALLMKFGSVENIKNAKLEEL 604 Query: 590 ASIEGISKKIACKIYNHFHKNTSHT 614 E I K A I ++F K+ ++ Sbjct: 605 LLTESIDNKAANSIISYFKKHEHNS 629 >gi|114776451|ref|ZP_01451496.1| excinuclease ABC subunit C [Mariprofundus ferrooxydans PV-1] gi|114553281|gb|EAU55679.1| excinuclease ABC subunit C [Mariprofundus ferrooxydans PV-1] Length = 611 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 199/623 (31%), Positives = 317/623 (50%), Gaps = 32/623 (5%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 ++ +P PGVY+MLD A +V+YVGKA NL+KR+ SY + R M+ Q+ +I F Sbjct: 7 IALTALPREPGVYRMLDHARKVIYVGKARNLRKRVSSYFQRQPESPRTIAMVRQVRDIAF 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +VT +E EAL+LE N+IK+LKPR+N+L++D K++PYIL++ P L +R + T+ G Sbjct: 67 SVTPSEAEALVLEHNLIKQLKPRYNVLMKDSKTYPYILLS-DEPFPKLTMYRGNRTLPGE 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGPF + AV +T++ +Q F LR C D+VF +R+RPC+ QI RCS PC +S +Y Sbjct: 126 YFGPFPNAGAVHQTLHIMQSMFLLRDCEDAVFNNRSRPCMQHQIGRCSAPCCDIVSKAQY 185 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHI--QNHNDSI 238 V E ++FL G +++L + + M QA +E A I RDR+ AL + + + Sbjct: 186 RRQVDEVRQFLRGRDNDLLKGWEQQMQQAADAMQFEQAAILRDRIRALRSVLAGSEGGDL 245 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 + D L + G++ GT + +++ +IL L + Y + Sbjct: 246 PDDADGIVLIRHTTAVLACIGVRRSGRDLGTHNIRIDQATDAGELEILQSLLIERYEKEL 305 Query: 299 CPENILLSEEAEE-TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P +IL++ E L + + G K + P +G + + ++Q + + Sbjct: 306 PPADILVNTCKENIQELNRLIALIKPGKKTAVHSPVRGSRLQWLQQIGHSG--AQIIASR 363 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + S Q + A+ +P+RI DN+H+ G V + G G K+ YR++ L Sbjct: 364 KQESQQPAFAALAEMLAMEVVPERIAAVDNAHLGGTQMVAAITYAGWQGAEKDYYRRYKL 423 Query: 418 HP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 V DD M+ VLER F + ++ PD++++DGG+GQ Sbjct: 424 DGIAGQVIEGDDYGAMQAVLERFFRAIRED--------------TIPCPDLMLIDGGRGQ 469 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV--------KKGEALVLNMRDPIL 527 L A + + + +AKG R G E + G+ L L Sbjct: 470 LGVALQCATDAGLH-ELKLAGVAKGDARRVGEETIWPGWTDSGAIGIGKPLKPGRHSAAL 528 Query: 528 YFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586 I R+RDEAHRFA RKR+K++ + S LD + GIGP ++ LL+ FG ++ + ++ Sbjct: 529 LLIARVRDEAHRFAGAYMRKRKKQSMFTSVLDTVEGIGPAKRISLLKHFGGIEGVKKAGR 588 Query: 587 ETLASIEGISKKIACKIYNHFHK 609 + LA GIS K+A KI+ HK Sbjct: 589 KQLAQAPGISDKLAEKIFLSLHK 611 >gi|319952741|ref|YP_004164008.1| uvrabc system protein c [Cellulophaga algicola DSM 14237] gi|319421401|gb|ADV48510.1| UvrABC system protein C [Cellulophaga algicola DSM 14237] Length = 595 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 183/623 (29%), Positives = 298/623 (47%), Gaps = 50/623 (8%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + +P PGVYQ D ++LYVGKA NL+KR+ SY N+ + ++ +I +I+ Sbjct: 8 LQLSTLPNNPGVYQFYDAEDKILYVGKAKNLKKRVSSYFTKNHEIGKTRVLVKKIRSIKH 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE +ALLLE N+IK+ +PR+N+LL+DDKS+P+I I + P ++ R Sbjct: 68 IVVPTESDALLLENNLIKKYQPRYNVLLKDDKSYPWICI-KNERFPRIFPTRRHIKDGSE 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-----HRTRPCLLFQIKRCSGPCTGEI 175 YFGP+ S+ V+ ++ ++ + LR+C + + + + CL + +K C GPC Sbjct: 127 YFGPYTSMKTVKTLLDLIKSVYPLRTCNYDLSKEKIESGKYKVCLEYHLKNCKGPCEDYQ 186 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 E+Y + E ++ L G + + M + +E A ++++A L + Q Sbjct: 187 DVEEYHRQIQEIREILKGNFKSSLQYFKNQMKIFAEEMRFEEAQDIKEKVAVLENYQVRT 246 Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 N +D FS+ +++ A + G + T +K + + +L+ + + Sbjct: 247 TIVNPKINNVDVFSIISDESFAYVNYLQLSHGSIIRSHTLEIKKKLDELDVDLLAMAIVE 306 Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR-- 350 + VKIT+PK G+K++I+E + NA Sbjct: 307 IRQRFKSLTKEIYVPFLVAVE-----------QDVKITIPKLGDKKRILELSERNAKLQR 355 Query: 351 ----SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 + + + + ++ K L P+ IE +DNS+I G + V VV + Sbjct: 356 QERFNQIKIMDPDRHTNRLMAQMKKDLRLSGEPRHIECFDNSNIQGTNPVAACVVFKDGK 415 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 K +YR +N+ V DD A M V+ RR+ +L++ + L P + Sbjct: 416 PSKKEYRHYNIKT--VDGPDDFASMEEVVFRRYKRLLEEGDPL--------------PQL 459 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526 +++DGGKGQLS+A L L + +I II IAK + E +F L L+ + Sbjct: 460 IVIDGGKGQLSSALKSLDLLGLRGKIAIIGIAKRLE-----EIYFPGDSIPLYLDKKSES 514 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 L IQ LR+EAHRF IT HR +R A S L+ I GIG LL+ F +VK I +S Sbjct: 515 LKVIQFLRNEAHRFGITFHRNKRSAGAISSELETIEGIGGKTIEDLLKKFKSVKRIKEAS 574 Query: 586 PETLASIEGISKKIACKIYNHFH 608 E LA G+++ A KIY +FH Sbjct: 575 LEHLAETIGMAR--AKKIYENFH 595 >gi|77412313|ref|ZP_00788627.1| excinuclease ABC, C subunit [Streptococcus agalactiae CJB111] gi|77161632|gb|EAO72629.1| excinuclease ABC, C subunit [Streptococcus agalactiae CJB111] Length = 593 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 172/615 (27%), Positives = 294/615 (47%), Gaps = 41/615 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D G ++YVGKA NL+ R+KSY H +++T + ++S+I + + Sbjct: 8 KLELLPDSPGCYLHKDKNGTIIYVGKAKNLKNRVKSYFHGSHNT-KTELLVSEIEDFEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + EALLLE N+I+ P++NI L+DDKS+PYI IT+ + P L R G+Y Sbjct: 67 VTTSNTEALLLEINLIQENMPKYNIRLKDDKSYPYIKITN-ERYPRLMITRQVKKSDGTY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ A + L R F + C + + C + + +C+ + + + Sbjct: 126 FGPYPDSGAATEIKRLLDRLFPFKKCTNP----ANKVCFYYHLGQCNAHTVCQTNKAYWD 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + K+FL+G ++ + + M A + ++E A +RD + A+S ++ I+ Sbjct: 182 SLREDVKQFLNGKDNKIVNGLTEKMKSAAMTMEFERAAEYRDLIEAISLLRTKQRVIHQD 241 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 M D F + +K C+Q F G+ +E + T Sbjct: 242 MKDRDVFGYFVDKGWMCVQVFFVRNGKLIQRDVNMFPYYNEPEEDFLTYIGQFYQDTKHF 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ + + ++ + S+ I KI P++GEK++++ A+ NA + Sbjct: 302 LPKEVFIPQDIDAKSVETIV-------GCKIVKPQRGEKKQLVNLAIKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +++ +P RIE +DNS+I G S V MVV K YRK Sbjct: 355 LEKDIRKTHGAIENLGNLLNIPKPV-RIEAFDNSNIQGTSPVAAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + V DD A MR V+ RR+S+++K+ + PD++++DGG+G Sbjct: 414 FKIKT--VIGPDDYASMREVIHRRYSRVLKDG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+ + + I I + K K E F E + L + + R++ Sbjct: 458 QVNIARDVI-ENQLGLAIPIAGLQKNDKHQT-HELLFGDPLEVVELPRNSEEFFLLHRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+LL++ F ++ I ++ E + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSKLDGITGLGPKRKQLLMKHFKSLSSIQKADIEDIIM-C 574 Query: 594 GISKKIACKIYNHFH 608 GI + +A + + + Sbjct: 575 GIPRNVAESLRDSLN 589 >gi|329115884|ref|ZP_08244601.1| excinuclease ABC, C subunit [Streptococcus parauberis NCFD 2020] gi|326906289|gb|EGE53203.1| excinuclease ABC, C subunit [Streptococcus parauberis NCFD 2020] Length = 592 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 170/616 (27%), Positives = 289/616 (46%), Gaps = 41/616 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y + G+++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPDSPGCYLHKNKDGKIIYVGKAKNLKNRVRSYFRGSHDT-KTELLVSEIADFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + EALLLE N+I+ PR+NI L+DDKS+P+I IT++H P L R G Y Sbjct: 67 VTGSNTEALLLEINLIQENMPRYNIKLKDDKSYPFIKITNEH-FPRLLITRQIRKNDGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + L R F + C + V + C + I +C+ + + Sbjct: 126 FGPYPDSYTANEVKKLLDRIFPFKKCTNPV----NKVCFYYHIGQCNAHTICQTDKAYWD 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 V + K FL+G + + + + R M A+ + ++E A +RD ++ ++ ++ + Sbjct: 182 GLVEDVKLFLNGKDDKIIDGLKRKMKTASEELEFERAAEYRDLISGIATLRTKQRVMSKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y K C+Q F G+ +E + + Sbjct: 242 LMDRDIFGYYVEKGWMCVQVFFVRQGKLIQRDVNMFPYYNEEEDDFLTYMGQFYQDKRHF 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ + + + + I K P++GEK++++ A NA + Sbjct: 302 LPKEVFIPANIDHELVEAIVPSKIIK-------PQRGEKKQLVALATKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + + + + A+P RIE +DNS+I G S V MVV + K YRK Sbjct: 355 LEKDLKKTKGAIDNLGELMAIPTP-IRIEAFDNSNIQGTSPVAAMVVFVDGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + V DD A MR V+ RR+S++ K+ PD++I+DGG+G Sbjct: 414 FKIKT--VTGPDDYASMREVISRRYSRVQKDN--------------LQAPDLIIIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V++ + I + + K K E F E + L + + R++ Sbjct: 458 QVNIAKDVIQN-QLGLSIPVAGLQKNDKHQT-QELLFGDPLEVIDLPRNSEEFFLLHRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+ LL+ F + I ++ + + ++ Sbjct: 516 DEVHRFAITFHRQVRSKNSFSSKLDNIEGLGPKRKQTLLKHFKNMTAIGNATVDEIRAL- 574 Query: 594 GISKKIACKIYNHFHK 609 GI +K+A + F++ Sbjct: 575 GIPEKVAENLLASFNQ 590 >gi|304406620|ref|ZP_07388275.1| excinuclease ABC, C subunit [Paenibacillus curdlanolyticus YK9] gi|304344153|gb|EFM09992.1| excinuclease ABC, C subunit [Paenibacillus curdlanolyticus YK9] Length = 677 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 188/674 (27%), Positives = 301/674 (44%), Gaps = 92/674 (13%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M + G ++YVGKA L+ R++SY + + H + ++S+I ++ + VT + Sbjct: 24 LPDAPGCYLMKNGEGTIIYVGKAKVLKNRVRSYFNGS-HNGKTQRLVSEIRDLEYIVTGS 82 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ PR+N+LL+DDK+FPYI IT+ + P L R + YFGP+ Sbjct: 83 NMEALILECNLIKQYHPRYNVLLKDDKTFPYIKITN-ERHPKLEVTRRVLKDKAKYFGPY 141 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + A ++T L R + LR C + CL + I +C PC ++ +Y V Sbjct: 142 PNAFAAQQTKKLLDRLYPLRKCNTLP----DKVCLYYHIGQCIAPCEFDVEQSEYDRMVS 197 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 + KFL+GG +K ++ R M +A ++E A +RD++ A+ I Sbjct: 198 DITKFLNGGQDEVKSELQRKMEEAAESLEFERAKEYRDQIIAIEAIVEKQKITMADAVDR 257 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-CPE 301 D F +K C+Q + G+ + E F+ Q+Y+D P P Sbjct: 258 DVFGYAVDKGWMCVQILYMRSGKMVERRSSSFPYYGE--AYDDFVTFVAQYYSDNPALPR 315 Query: 302 NILLSEEAEETSL----------------------------------------------- 314 ILL E EE + Sbjct: 316 EILLPEPPEEMPVDVQEGETTASESASIPVQEERAAGSSRSGAQAESGELTGGTESDEEA 375 Query: 315 ------LEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLSTEISHQM 364 ++ Q KVK+ VP++ KR+++E A NA E Sbjct: 376 PAGSRADDVRESLQKWLKVKVFVPRRARKREVVEMACNNAKVALDEKFRLIERDEERSVK 435 Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424 + L + RIE +DNS+I G + V MVV + + +YRK+ + V Sbjct: 436 ASESLAGWLGLESVR-RIEAFDNSNIQGTNPVSAMVVFIDGKPERKEYRKYKVRT--VVG 492 Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV-L 483 DD MR V+ RR+ +++K PD++++DGGKGQ++ A V Sbjct: 493 ADDYETMREVVRRRYERVLKEG--------------LEQPDLIVVDGGKGQIAVALDVLR 538 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 +L + +I + + K K E + L Y +QR++DE HRFAIT Sbjct: 539 NELGL--QIPVCGLVKDAKHKTAQ-LMTGDPPEVVPLPRDSQEFYLLQRIQDEVHRFAIT 595 Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HR++R K+ S LD I GIG R++ LL+ FG++K I +S E + I +K+A + Sbjct: 596 FHREQRGKSMVASQLDAIPGIGEKRRKALLKHFGSLKKIREASVEDFKPL-SIGEKLAEQ 654 Query: 603 IYNHFHKNTSHTPT 616 I + T Sbjct: 655 ILAALREGEESAGT 668 >gi|14250931|emb|CAC39227.1| UvrC protein [Eubacterium acidaminophilum] Length = 607 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 191/616 (31%), Positives = 310/616 (50%), Gaps = 36/616 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRFTVTC 64 +P+ PGVY M D G ++Y+GKA +L+ R++ Y S+ + ++ M+ I+ + +T Sbjct: 11 LPDSPGVYIMKDSTGDIIYIGKAKSLKNRVRQYFGSHGKSSPKVEAMVGNISEFEYIMTD 70 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E+EAL+LE N+IK+ +P++NI+ RDDK++P+I ++ P + K R YFGP Sbjct: 71 SELEALILECNLIKKHRPKYNIIFRDDKTYPFIKVSVNEDYPRVLKVRSMREDGAKYFGP 130 Query: 125 FASVDAVEKTINSLQRTFFLRSCAD---SVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 + S AV I+ ++R + +R C + + + RPC+ + I +C+GPC G + E+YM Sbjct: 131 YTSEGAVNDVISLIRRIYPIRKCKNDIKRMIQRGERPCINYDIGKCTGPCRGIDAREQYM 190 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + + E FLSG + L E I + M A + D+E A RD++ +L + + Sbjct: 191 QMIDEIVTFLSGRSETLIESIEQQMQVAAERLDFEKAAYFRDKIGSLRILAQRQKIVSKS 250 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DK 297 D + Y + ACIQ F G+ G F ++ E ++ + F++ FY+ Sbjct: 251 SVDQDFIAAYFYEGKACIQVFFVREGRIIGREHFVVEDVLEEQKGEVFASFIKHFYSYQG 310 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--HTQK 355 P IL+ E E +L+ G KV I VP++GEKR++IE NA S Sbjct: 311 FIPSEILIESETGEDEVLQSWLESIKGRKVHIKVPQKGEKREMIEMVKKNARESAEKFSN 370 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 +S Q +L++ L P RIE +D S+I G +VG MVV +YR+F Sbjct: 371 VSRLKDSQELLEELRSLLELEETPNRIEAFDISNIQGVDSVGSMVVFTRGRKDSKEYRRF 430 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 + V+ DD + + ++ RR + + PD++++DGG+GQ Sbjct: 431 RIKT--VQGPDDYSSLYEIVLRRLKK------------------WSGRPDLMLIDGGRGQ 470 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 + +L +L V+ I + + K K V + L + FI ++D Sbjct: 471 VGVVSRLLLELGVD--IPVWGMYKDDKHRTRG---LVSLEREIELKKSSQLYRFICTIQD 525 Query: 536 EAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFAI HR R K S LD+I G+G RK LL+ F +V+ I + E L +I G Sbjct: 526 EAHRFAIDYHRSLRHGKLKRSVLDDIAGVGEKRKLLLISHFRSVENIRNAKLEELKAISG 585 Query: 595 ISKKIACKIYNHFHKN 610 IS ++A +IY F + Sbjct: 586 ISAEVAERIYMFFREE 601 >gi|169824072|ref|YP_001691683.1| excinuclease ABC subunit C [Finegoldia magna ATCC 29328] gi|229558030|sp|B0S0L4|UVRC_FINM2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|167830877|dbj|BAG07793.1| excinuclease ABC subunit C [Finegoldia magna ATCC 29328] Length = 608 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 193/619 (31%), Positives = 317/619 (51%), Gaps = 28/619 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 +++P PGVY M D ++YVGKA +L++R+ Y S+ ++ M+S + + Sbjct: 7 ELQKVPHKPGVYIMHDKNDEIIYVGKAIDLRRRVGQYFDSSKKLAKVAAMVSHVEYFEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 + E EAL+LE+N+IK+ P++NI+LRDDK +PYI IT+ K P + K R + Y Sbjct: 67 IVNNECEALVLESNLIKKNSPKYNIVLRDDKQYPYIKITN-EKFPRVLKTRRVLKDKAKY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSEK 179 FGPF + AV I+ + T+ +R+C + + + RPCL + I RC G C +++ E Sbjct: 126 FGPFPNAYAVNDIIDLIHETYKIRTCNLNFDKGQKLKRPCLNYYINRCDGMCVYDVNEED 185 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + + E + FL+G L +K+ M A+ ++E A RD + + I + Sbjct: 186 YNKELLEVENFLNGREDELTKKLTDKMMAASKNLNFELAAKLRDSITNIQVILEKQNITN 245 Query: 240 NRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + D S+ C+Q F G+ F + E +N I+ F +QFY D Sbjct: 246 TKGLDLDMISMAREAETVCVQVFFMRNGKIIERQHFIIDNKYEESNEHIVGEFFKQFYID 305 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR----S 351 P+ IL E E+ L+E ++ G KV+I +PK+G K ++E +NA Sbjct: 306 LTYVPKQILTDIEIEDRDLIEEMLTEKKGSKVEIKIPKRGNKTDLLEMVRVNAKEGLDKY 365 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 ++ L E + + + D + I RIE YD S+ G +VG M+V Sbjct: 366 ISRHLKRERNRENAILDLQDITGVKPID-RIECYDISNTSGVDSVGSMIVFKNGAKSSKD 424 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YRKF + V+ DD A R VL RRF +L+ +++ ++ SF P ++++DG Sbjct: 425 YRKFKIKT--VEGADDYASHREVLTRRFRRLLDSDK--------KDNSFDEMPSIILMDG 474 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GKGQ++ A+ VL + N++ I I+ + K K + + E + L + P+ + Sbjct: 475 GKGQVNIAKEVLNEFNLD--IPILGLVKDDKHRTRG---IIYENEEIRLKVNTPLYRLLF 529 Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +++E HRFAI HRK +K S LD I IG RK+ L++ F T+ I ++S E L Sbjct: 530 AIQEETHRFAINYHRKLHEKNFKKSELDNIALIGEKRKKALMKHFKTLDRIKKASVEELC 589 Query: 591 SIEGISKKIACKIYNHFHK 609 ++G+++K A I N+F + Sbjct: 590 EVDGMNEKAAENIVNYFKQ 608 >gi|21220438|ref|NP_626217.1| excinuclease ABC subunit C [Streptomyces coelicolor A3(2)] gi|8134800|sp|Q9Z512|UVRC_STRCO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|4468689|emb|CAB38143.1| ABC excision nuclease subunit C [Streptomyces coelicolor A3(2)] Length = 728 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 180/679 (26%), Positives = 305/679 (44%), Gaps = 72/679 (10%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 ++P+ PGVY+ D RV+YVGKA +L++R+ +Y + R M++ ++ +TV Sbjct: 13 EIPDSPGVYRFRDEHRRVIYVGKAKSLRQRLANYFQDLAHLHPRTRTMVTTAASVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE + IK PRFN+ RDDKS+PY+ +T + P + R YFG Sbjct: 73 STEVEALQLEYSWIKEYDPRFNVKYRDDKSYPYLAVTMNEEFPRVQVMRGQKKKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P+ A+ T++ L R F +R+C+ VF++ RPCLL I +CS PC G I+ + + Sbjct: 133 PYGHAWAIRDTVDLLLRVFPVRTCSAGVFKNAARTGRPCLLGYIGKCSAPCVGRITPDDH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + E F++G ++ R M +A + +YE A RD + AL + + Sbjct: 193 WDLADEFCDFMAGRTGTYLRRLERQMAEAAEEMEYERAARLRDDIGALKKAMEKSAVVLA 252 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D ++ ++ A +Q G+ RG + E T ++ + L+Q Y ++ Sbjct: 253 DATDADLIAVAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEEITTGALVEHALQQLYGEE 312 Query: 298 ---PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P+ +L+ + ++ ++ G V + +P++G+K+ ++E NA ++ Sbjct: 313 KGDAVPKEVLVPALPDPVEPVQQWLAERRGSGVSLRIPQRGDKKALMETVQRNAQQALVL 372 Query: 355 KLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + S L++ + L P RIE YD SH+ G V MVV + K+ Sbjct: 373 HKTKRASDLTTRSRALEEIAEALDLDSAPLRIECYDISHLQGDDVVASMVVFEDGLARKS 432 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEEN---------LNFHPKKQEYSFP 461 +YR+F + + QDD M V+ RRF + + +E L + Sbjct: 433 EYRRFQIKG--FEGQDDVRSMHEVITRRFRRYLAEKERTGEWADGEGLVDDARHPNGDAA 490 Query: 462 SWPDVVILDGGKGQLSAAQGVLKKL----NVENRITI----------------------- 494 D DG AA+ + L + + + Sbjct: 491 PNGDAAPNDGAAPDDGAARTDGRGLTDGQELTDGPALKDDDGRPKRFAYPPQLVVVDGGQ 550 Query: 495 -----------------ISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 I++ KR E + ++ + +VL LY +QR+RDEA Sbjct: 551 PQVAAAQRALDELGIDDIAVCGLAKRL--EEVWLPREDDPVVLPRTSEGLYLLQRVRDEA 608 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT R +R K PLD++ G+G RK+ L++ FG+VK + ++ + + + GI Sbjct: 609 HRFAITYQRAKRAKRFRAGPLDDVPGLGETRKQALIKHFGSVKKLRSATIDQICEVPGIG 668 Query: 597 KKIACKIYNHFHKNTSHTP 615 +K A + + T P Sbjct: 669 RKTAETVAVALARATPAAP 687 >gi|188586645|ref|YP_001918190.1| excinuclease ABC, C subunit [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351332|gb|ACB85602.1| excinuclease ABC, C subunit [Natranaerobius thermophilus JW/NM-WN-LF] Length = 685 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 205/653 (31%), Positives = 328/653 (50%), Gaps = 58/653 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PGVY M GRV+YVGKA NL+ R++SY +S N ++ M +I++I VT Sbjct: 12 NLPEKPGVYLMKSKQGRVIYVGKAINLKNRVRSYFNSGNKAVKVQVMTPKISDIETIVTD 71 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E+EAL+LE N+IK+ +P++N+ LRDDK++PY+ IT + P L R YFGP Sbjct: 72 SELEALILENNLIKKYRPKYNVSLRDDKNYPYLKITTEEDYPRLIIARRMGKHG-RYFGP 130 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEKYMEF 183 + + AV +TI L++ F +R+C +++ RPCL + I RC PC ++S ++Y E Sbjct: 131 YPNAGAVRETIKLLRKLFPVRTCKGETPKNQGKRPCLNYFINRCLAPCNEKVSRDEYREM 190 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD 243 + + L G L ++ R MN A + ++E A +R++ AAL I+ + R + Sbjct: 191 IQDIISVLEGKEEELLNELERKMNLAAEEMEFEKAAEYRNQKAALEKIRQKQKIVSERRE 250 Query: 244 CFSLYHNK---------------NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSY 288 + + AC+Q + G+ G F + T + +L+ Sbjct: 251 DYDIIALGFEEKIDDTSDTDDSTEEACVQIFYIRGGKLMGRNNFRVSTGALEGAEDMLTS 310 Query: 289 FLRQFYTDK-PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347 F++Q+Y P+ IL+S E L+E ++ KV++ VP++GEK +++ A+ N Sbjct: 311 FIKQYYAQALHVPKQILVSHPLTEKELIESWLAEKREGKVEVKVPQRGEKYQLMNMAIKN 370 Query: 348 AHRSHTQKLSTEISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVG 403 A Q+ + LK+ K +L IP R+E YD SH G V MVV Sbjct: 371 AELELKQQELESEKERKMTEGALKELALKLSLSEIPFRVEGYDISHTQGEETVASMVVFE 430 Query: 404 ENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------------- 447 K YRKF + DD M VL RRF + K E+ Sbjct: 431 GGKSKKKDYRKFRIRTT--AGPDDFKAMEEVLRRRFHRAKKEEQEYLMAAETKQDSEYDA 488 Query: 448 -----------NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIIS 496 N + ++ F PD++++DGGKGQLS+A V++++ +I +IS Sbjct: 489 REGNKDNISQYNSGTEYSEYDFKFAVLPDLIVIDGGKGQLSSAVKVMEEVGYS-QIPVIS 547 Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YS 555 +AK + E F ++ +L L +QR+RDEAHRFA++ HRK R KA S Sbjct: 548 LAKREE-----EIFVPERSTSLKFPSNSEALKLLQRIRDEAHRFAVSYHRKSRGKATLTS 602 Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 LDE+ IG RK+ L + + ++ I ++S + LA++ ++KK A + + Sbjct: 603 LLDEVPEIGSRRKKELFEHYSSLNEIKQASIDELANLPSMNKKAAKNLVTYLK 655 >gi|298346942|ref|YP_003719629.1| excision endonuclease subunit UvrC [Mobiluncus curtisii ATCC 43063] gi|298237003|gb|ADI68135.1| excision endonuclease subunit UvrC [Mobiluncus curtisii ATCC 43063] Length = 693 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 186/690 (26%), Positives = 307/690 (44%), Gaps = 85/690 (12%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + ++P PGVY+ D RV+YVGKA NL+ R+ SY R M++ ++ + Sbjct: 8 KASEIPMQPGVYRWRDERNRVIYVGKAKNLRNRLTSYFVDPARLHPRTAKMVATAASVSW 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V +EVEAL LE IK P+FN++ +DDKS+PY +T + P + R + Sbjct: 68 VVVGSEVEALTLEYTWIKEHDPKFNVMFKDDKSYPYFAVTMNQEYPRMGVLRTAHQRGVR 127 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISS 177 YFGP+ +V A+ +T++ LQ F +R+C+D VF R CLL I RC+ PC G +S+ Sbjct: 128 YFGPYTAVWAIRQTLDLLQTVFPVRTCSDGVFARAQAANRACLLGYIGRCAAPCIGRVSA 187 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 ++ E + F+SG + +I M +E A RD+L AL + N + Sbjct: 188 AQHRELAEKVCDFMSGRDAGFLREIETAMWDDAQAYRFEEAARKRDQLEALRKVLEKNAA 247 Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D F+L ++ +Q + G+ RG + + + +++ L Q Y Sbjct: 248 VLSDDTDADLFALEADELQVSVQVFYVRAGRIRGQRGWVSAREEDLDEPSLMARALEQIY 307 Query: 295 TDKP------------------------------CPENILLSEEAEETSLLEISFFKQYG 324 + P+ IL+S + +L+ G Sbjct: 308 GEAAADFAHEGGVARPRRVGPSSANDTAHFDTSVIPKEILVSVSPADVGMLQRWLGALRG 367 Query: 325 YKVKITVPKQGEKRKIIEQALINA----HRSHTQKLSTEISHQMILKDFTKKFALPHIPK 380 +V I VP++G KR+ + + +NA T++ + L + + + Sbjct: 368 SQVSIRVPQRGAKREALSRVQLNAVEGLRLYKTRRARDLTQRNLALNELGRLLEIDPPL- 426 Query: 381 RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT-QDDCAMMRMVLERRF 439 RIE YD SH G +G MVV + K+ YRKF++ D DD M VL RRF Sbjct: 427 RIECYDISHTQGTFQMGSMVVFEDGAPRKDAYRKFSIRGEDGTGTPDDTTAMNEVLRRRF 486 Query: 440 SQLIKNEEN-----------------------------------LNFHPKKQEYSFPSWP 464 +LI+ E +++ F P Sbjct: 487 ERLIQEENGQSSAQSEPNATTTARGTDLVETKHPSPQTTPSVALPPLGTEREPRRFSYRP 546 Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524 D+V++DG Q+ AA+ + ++ V + I +I +AK + E + V ++ Sbjct: 547 DLVVVDGALPQVHAARAAMDEVGVWD-IPVIGLAKRLE-----EVWRVDDDFPVIFPRTS 600 Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583 LY +Q LRDE+HRFAI+ HR++R + S LD G+GP +++ LL+ FG+VK + Sbjct: 601 EALYLLQYLRDESHRFAISAHRQKRARAMTRSILDAAPGVGPAKQKALLRHFGSVKRLRE 660 Query: 584 SSPETLASIEGISKKIACKIYNHFHKNTSH 613 +S +A + G K A + + + + Sbjct: 661 ASAAEIAEVPGFGLKSAENLVAFLNNSGNS 690 >gi|94267276|ref|ZP_01290829.1| Excinuclease ABC, C subunit [delta proteobacterium MLMS-1] gi|93452068|gb|EAT02756.1| Excinuclease ABC, C subunit [delta proteobacterium MLMS-1] Length = 603 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 190/609 (31%), Positives = 292/609 (47%), Gaps = 27/609 (4%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTVTCTE 66 + PGVY M D AG VLYVGKA +L+KR+ SY + M++++ + +T TE Sbjct: 12 DGPGVYLMKDKAGVVLYVGKAVSLRKRLASYTRIDPAARSKTAVMLAKVAAVDTVLTRTE 71 Query: 67 VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126 EAL+LEA +IK+ +PR+N++LRDDK++P I +T + + P L R + YFGP++ Sbjct: 72 KEALILEAGLIKQHRPRYNVILRDDKNYPSIKVTLQEEWPRLLMTRRLTRDGARYFGPYS 131 Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186 S A+ +TI L + LR C FR R CL +Q+ RC GPC G I E Y + V Sbjct: 132 SPAAMWETIRLLNTLYPLRRCKTKKFRPGQRACLNYQLGRCPGPCIGAIGPEAYRQRVER 191 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMD 243 L G L +++ + M A + +E A RD++ AL D Sbjct: 192 VLAILEGRKRELVKELEQQMAAAAAELRFEEAAALRDQIGALHQTLEKQLVAGQEKGARD 251 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--TDKPCPE 301 F L + G FFL +A++L+ LR++Y P P Sbjct: 252 VFGLVRREGKVAAALLLIREGALADKRQFFLDQPLG-DDAEVLAELLRRYYEPEQHPVPP 310 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 ILL E ++ L ++ G V++ VP++G+K+ ++ A NA + + E Sbjct: 311 RILLPFAPEGSAALAEWLSEKRGGPVQLLVPRRGDKKALVGMAHDNAAQVLAEHGRQEQQ 370 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 + + + L P R+E D S++ G AVG ++ +YR+F + D Sbjct: 371 WEQLATAIQQAMQLVQPPTRLECLDISNLGGQQAVGSLISFNSGVKEPGRYRRFKIRTRD 430 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 DD AMMR VL R S+ + + + GQL AQ Sbjct: 431 TP--DDYAMMREVLWRHLSRGWQQQSLPDLLLLDGGK---------------GQLGVAQA 473 Query: 482 VLKKLNV-ENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 V+ +L + ++ + +IAK + G F + L L P+L F+ RLRDEAHRF Sbjct: 474 VVAELGLAADKPALAAIAKERE-GEGERIFLPGRKNPLKLAPNSPVLLFMMRLRDEAHRF 532 Query: 541 AITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 IT HRK R + S LD I G+GP RK LL++ G+++ + +S LA++ GI ++ Sbjct: 533 GITHHRKLRSQQQLASGLDRIPGVGPARKAALLKTLGSLEAVRGASRAELAAVSGIGPEL 592 Query: 600 ACKIYNHFH 608 A I++H Sbjct: 593 AAVIHDHLR 601 >gi|225868374|ref|YP_002744322.1| UvrABC system protein C [Streptococcus equi subsp. zooepidemicus] gi|259710348|sp|C0MDW7|UVRC_STRS7 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|225701650|emb|CAW98952.1| UvrABC system protein C [Streptococcus equi subsp. zooepidemicus] Length = 594 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 169/614 (27%), Positives = 284/614 (46%), Gaps = 41/614 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D AG ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPDSPGCYLHKDKAGTIIYVGKAKNLRNRVRSYFRGSHDT-KTELLVSEIADFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + EALLLE N+I+ P++NI L+DDKS+P+I IT+ P L R G Y Sbjct: 67 VTGSNTEALLLEINLIQENMPKYNIKLKDDKSYPFIKITN-EPFPRLLITRQIKKNDGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + L R F + C + V + C + + +C + Sbjct: 126 FGPYPDAYTATEVKKLLDRIFPFKKCKNPV----NKVCFYYHLGQCQAHTICHTDKAYWD 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 V + K+FL+G + + + + M +A+ +++E A +RD ++ ++ ++ + Sbjct: 182 SLVADVKQFLNGKDDKIIDDLRSKMLEASHNQEFERAAEYRDLISGIATMRTKQRVMSKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F + +K C+Q F G+ +E+ + Sbjct: 242 LQDRDIFGYFVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNEAEEDFLTYVGQFYSDQRHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ + + E +ET + I + P++GEK++++ A NA + Sbjct: 302 IPKEVFIPETIDETLVAAIVPARIVK-------PQRGEKKQLVALATKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 ++ + + RIE +DNS+I G S V MVV + K YRK Sbjct: 355 LEKDLRKTSGAIEHLGQLLGIEKPV-RIEAFDNSNIQGTSPVAAMVVFVDGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + V DD A MR V+ RR+S++ PD++I+DGG+G Sbjct: 414 FKIKT--VIGPDDYASMREVIYRRYSRVKHEG--------------LQAPDLIIVDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q+ AA+ V+ + + I + + K K E F + L + + R++ Sbjct: 458 QVKAARDVI-EHQLGLSIPVAGLQKNDKHQT-HELLFGNPLAVVELPRNSEEFFLLHRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K A+S LD I G+GP RK+LLL+ F ++ + ++S E + + Sbjct: 516 DEVHRFAITFHRQVRSKNAFSSKLDHIAGLGPKRKQLLLKRFKSMAALEQASLEEIQQL- 574 Query: 594 GISKKIACKIYNHF 607 GI K +A + +H Sbjct: 575 GIPKTVAEALIDHL 588 >gi|94270409|ref|ZP_01291734.1| Excinuclease ABC, C subunit [delta proteobacterium MLMS-1] gi|93450815|gb|EAT01854.1| Excinuclease ABC, C subunit [delta proteobacterium MLMS-1] Length = 603 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 190/609 (31%), Positives = 292/609 (47%), Gaps = 27/609 (4%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTVTCTE 66 + PGVY M D AG VLYVGKA +L+KR+ SY + M++++ + +T TE Sbjct: 12 DGPGVYLMKDKAGVVLYVGKAVSLRKRLASYTRIDPAARSKTAVMLAKVAAVDTVLTRTE 71 Query: 67 VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126 EAL+LEA +IK+ +PR+N++LRDDK++P I +T + + P L R + YFGP++ Sbjct: 72 KEALILEAGLIKQHRPRYNVILRDDKNYPSIKVTLQEEWPRLLMTRRLTRDGARYFGPYS 131 Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186 S A+ +TI L + LR C FR R CL +Q+ RC GPC G I E Y + V Sbjct: 132 SPAAMWETIRLLNTLYPLRRCKTKKFRPGQRACLNYQLGRCPGPCIGAIGPEAYRQRVER 191 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMD 243 L G L +++ + M A + +E A RD++ AL D Sbjct: 192 VLAILEGRKRELVKELEQQMAAAAAELRFEEAAALRDQIGALHQTLEKQLVAGQEKGARD 251 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--TDKPCPE 301 F L + G FFL +A++L+ LR++Y P P Sbjct: 252 VFGLVRREGKVAAALLLIREGALADKRQFFLDQPLG-DDAEVLAELLRRYYEPEQHPVPP 310 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 ILL E ++ L ++ G V++ VP++G+K+ ++ A NA + + E Sbjct: 311 RILLPFAPEGSAALAEWLSEKRGGPVQLLVPRRGDKKALVGMAHDNAAQVLAEHGRQEQQ 370 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 + + + L P R+E D S++ G AVG ++ +YR+F + D Sbjct: 371 WEQLATAIQQALQLVQPPTRLECLDISNLGGQQAVGSLISFNSGVKEPGRYRRFKIRTQD 430 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 DD AMMR VL R S+ + + + GQL AQ Sbjct: 431 TP--DDYAMMREVLWRHLSRGWQQQSLPDLLLLDGGK---------------GQLGVAQA 473 Query: 482 VLKKLNV-ENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 V+ +L + ++ + +IAK + G F + L L P+L F+ RLRDEAHRF Sbjct: 474 VVAELGLAADKPALAAIAKERE-GEGERIFLPGRKNPLKLAPNSPVLLFMMRLRDEAHRF 532 Query: 541 AITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 IT HRK R + S LD I G+GP RK LL++ G+++ + +S LA++ GI ++ Sbjct: 533 GITHHRKLRSQQQLASGLDRIPGVGPARKAALLKTLGSLEAVRGASRAELAAVSGIGPEL 592 Query: 600 ACKIYNHFH 608 A I++H Sbjct: 593 AAVIHDHLR 601 >gi|195978295|ref|YP_002123539.1| excinuclease ABC subunit C [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|238689823|sp|B4U3F9|UVRC_STREM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|195975000|gb|ACG62526.1| excinuclease ABC subunit C [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 594 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 171/614 (27%), Positives = 286/614 (46%), Gaps = 41/614 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D AG ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPDSPGCYLHKDKAGTIIYVGKAKNLRNRVRSYFRGSHDT-KTELLVSEIADFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + EALLLE N+I+ P++NI L+DDKS+P+I IT+ P L R G Y Sbjct: 67 VTGSNTEALLLEINLIQENMPKYNIKLKDDKSYPFIKITN-EPFPRLLITRQIKKNDGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + L R F + C + V + C + + +C + Sbjct: 126 FGPYPDAYTATEVKKLLDRIFPFKKCKNPV----NKVCFYYHLGQCQAHTICHTDKAYWD 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 V + K+FL+G + + + + M +A+ K+++E A +RD ++ ++ ++ + Sbjct: 182 SLVADVKQFLNGKDDKIIDDLRSKMLEASNKQEFERAAEYRDLISGIATMRTKQRVMSKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F + +K C+Q F G+ +E+ + Sbjct: 242 LQDRDIFGYFVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNEAEEDFLTYVGQFYSDQRHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ I + E +ET + I + P++GEK++++ A NA + Sbjct: 302 IPKEIFIPETIDETLVAAIVPARIVK-------PQRGEKKQLVALATKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 ++ + + RIE +DNS+I G S V MVV + K YRK Sbjct: 355 LEKDLRKTSGAIEHLGQLLGIEKPV-RIEAFDNSNIQGTSPVAAMVVFVDGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + V DD A MR V+ RR+S++ PD++I+DGG+G Sbjct: 414 FKIKT--VIGPDDYASMREVIYRRYSRVKHEG--------------LQVPDLIIVDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q+ AA+ V+ + + I + + K K E F + L + + R++ Sbjct: 458 QVKAARDVI-EHQLGLSIPVAGLQKNDKHQT-HELLFGNPLAVVELPRNSEEFFLLHRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K A+S LD I G+GP RK+LLL+ F ++ + ++S E + + Sbjct: 516 DEVHRFAITFHRQVRSKNAFSSKLDHIAGLGPKRKQLLLKRFKSMTALEQASLEEIQQL- 574 Query: 594 GISKKIACKIYNHF 607 GI K +A +++H Sbjct: 575 GIPKTVAEALFDHL 588 >gi|91215528|ref|ZP_01252499.1| excinuclease ABC, C subunit [Psychroflexus torquis ATCC 700755] gi|91186480|gb|EAS72852.1| excinuclease ABC, C subunit [Psychroflexus torquis ATCC 700755] Length = 600 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 182/624 (29%), Positives = 306/624 (49%), Gaps = 52/624 (8%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + +PE PGVYQ D R+LYVGKA NL+KR+ SY + + +HRI M+++I +I+ Sbjct: 8 IQVKTLPESPGVYQYYDKDDRILYVGKAKNLKKRVSSYFNKQHDSHRIGVMVNKIKDIKH 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V +E++ALLLE +IK+L+PRFNI+LRDDK++P++ I + P ++ R Sbjct: 68 IVVDSEMDALLLENTLIKKLQPRFNIMLRDDKTYPWLCI-KNERFPRVFLTRQIIKDGSE 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-----HRTRPCLLFQIKRCSGPCTGEI 175 Y+GP+ S+ V+ + ++ F LR+C + + + + CL + + C GPC Sbjct: 127 YYGPYPSLRTVKTILGLIKGLFQLRTCNYDLSKAKIDNGKYKVCLEYHLGNCKGPCEDLQ 186 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 +YM+ + + + G + + M +E A + +++ L Q + Sbjct: 187 DEGEYMKQIEAIRNIVKGNLKDSLKDFREQMGHLAEDMRFEEAEKVKRKISTLEKYQFKS 246 Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 N +D FS+ ++ + G + T +K + ++A++L + + Sbjct: 247 TVVNPKINNVDVFSVVSDEGYGYVNFMQLSHGAVVRSHTIEMKKKLDESDAELLELGITE 306 Query: 293 FYTDKPC-PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 I + E + V++TVPK G+K+ I+E ++ NA Sbjct: 307 IRQRFDSRSPEIYVPFEVKAGE------------YVRVTVPKLGDKKAIVELSIRNAKYF 354 Query: 352 HTQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405 ++ + ++ + L P+ IE +DNS+I G + V VV Sbjct: 355 RMERFKQMKIVDPDRHTNRLMAQMKEDLRLHEEPRHIECFDNSNIQGSNPVAACVVFKNG 414 Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465 K YRKFN+ V DD A M V+ RR+ +L++ +E L P Sbjct: 415 KPSKKDYRKFNIKT--VVGPDDFASMEEVVYRRYRRLLEEDEPL--------------PQ 458 Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525 +VI+DGGKGQLS+ L++L + +I II IAK + E F+ L L+ + Sbjct: 459 LVIVDGGKGQLSSGVTALERLGLRGKIPIIGIAKRLE-----ELFYPGDQYPLYLDKKTE 513 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 L IQ+LR+EAHRF IT HR +R K+ + L+EI GIG LLQ+F ++ + ++ Sbjct: 514 TLKIIQQLRNEAHRFGITFHRNKRSKSAIGTELEEITGIGEKTSIELLQNFRSITNVKKA 573 Query: 585 SPETLASIEGISKKIACKIYNHFH 608 S + L + G SK A I++++H Sbjct: 574 SLKELKDVIGSSK--ATIIHSYYH 595 >gi|88808548|ref|ZP_01124058.1| excinuclease ABC subunit C [Synechococcus sp. WH 7805] gi|88787536|gb|EAR18693.1| excinuclease ABC subunit C [Synechococcus sp. WH 7805] Length = 651 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 189/632 (29%), Positives = 302/632 (47%), Gaps = 27/632 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFT 61 +++P PG Y M D R+LYVGK+ +L+ R++SY S + + RI M+ QI I F Sbjct: 15 LKEIPSEPGCYLMRDGEDRLLYVGKSKSLRSRVRSYFRSRHDLSPRIRLMVRQICEIEFI 74 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ--G 119 VT +E EAL LE+N+IK +P FN+LL+DDK +PY+ IT P ++ R Sbjct: 75 VTDSEAEALALESNLIKNQQPHFNVLLKDDKKYPYLCITWSEPYPRIFITRRRRFRSPLD 134 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++GP+ V + +T+ ++R F LR + RT CL + I RC G C +ISSE Sbjct: 135 RFYGPYVDVGLLRRTLFLVKRVFPLRQRPRPLHADRT--CLNYSIGRCPGVCQEKISSED 192 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + + G + L+ + + M + + + DYESA RD+L L + Sbjct: 193 YHRTLRKVAMVFQGRSDELQMLLHQQMERYSERMDYESAAKIRDQLQGLDQLTADQKMSL 252 Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D ++ + LA +Q G+ G + ++ + + + Sbjct: 253 PDASVSRDVIAMAGDDRLAAVQLFQMRAGKLVGRLGYLADASNQPSGLTLQKVIEEHYSQ 312 Query: 296 --DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 P +L+ + + L+E +Q KV+I PKQ +K +IE NA Sbjct: 313 VDSVEIPPELLVQHQLPQQPLIEEWLSEQRERKVQIHCPKQRQKADLIELVQRNADYELQ 372 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + + +D + LP P+RIE YD SHI G AV VV + + YR Sbjct: 373 RAKQGQEQQALATEDLAQLLELPIPPRRIEGYDISHIQGSDAVASQVVFIDGLPARQHYR 432 Query: 414 KFNLHPNDV---KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE-------YSFPSW 463 K+ + + + + D AM ++ R + +E ++ +Q+ W Sbjct: 433 KYKIRSSSIRAGHSDDFMAMAEIMRRRFRRWALAKKEGVDVGALRQKGGSALQTDGLNDW 492 Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMR 523 PDVV++DGGKGQLSA L++L++ +TI S+AK + E F + + L +M Sbjct: 493 PDVVMIDGGKGQLSAVMEALRELDLHEDLTICSLAKQRE-----EVFLPGETQPLESDMD 547 Query: 524 DPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMIS 582 + ++RLRDEAHRFA++ HR++R + S L +I G+GP R + LL F ++ I Sbjct: 548 QLGVALLRRLRDEAHRFAVSFHRQQRGERMKRSRLSDIPGVGPKRVKDLLAHFHSIDAIQ 607 Query: 583 RSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +S ETL G+ +A I FH Sbjct: 608 LASVETLVKAPGVGLALARDIRCFFHPEEDTQ 639 >gi|152966879|ref|YP_001362663.1| excinuclease ABC subunit C [Kineococcus radiotolerans SRS30216] gi|151361396|gb|ABS04399.1| excinuclease ABC, C subunit [Kineococcus radiotolerans SRS30216] Length = 704 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 184/658 (27%), Positives = 302/658 (45%), Gaps = 54/658 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 ++P PGVY+ D GRV+YVGKA +L+ R+ +Y + R M++ ++ +TV Sbjct: 39 EIPVEPGVYRFRDPHGRVIYVGKAKSLRARLSNYFQDLSALHPRTMAMVTTAASVEWTVV 98 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE + IK PRFN+ RDDKS+PY+ +T ++P + R + YFG Sbjct: 99 ATEVEALQLEYSWIKEFDPRFNVKYRDDKSYPYLAVTMGEEVPRVQVMRGAKRKGTRYFG 158 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRT---RPCLLFQIKRCSGPCTGEISSEKY 180 P+ A+ +T++ L R F +R+C+ V++ RPCLL I +CS PC G+I +E++ Sbjct: 159 PYTHAWAIRETVDLLLRVFPVRTCSTGVYKRAGQVGRPCLLGYIDKCSAPCVGKIDAEEH 218 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + F++G + R M A + DYE A RD L AL+ + + Sbjct: 219 RALAQDFCDFMAGNTQKFVRRTEREMKAAAAEMDYERAARLRDDLGALTKALEKSAVVLP 278 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D F++ ++ A +Q G+ RG + + + Q++ L Q Y + Sbjct: 279 DATDADVFAIADDELEAAVQVFHVRGGRVRGQRGWVSEKVEDVDTPQLVEQLLLQVYGGE 338 Query: 298 P---CPENILLSEEAEETSLL-EISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 P +L+ E E + G +V + VP++G+KR ++E NA ++ Sbjct: 339 TGEGVPREVLVPELPATVEADVEDWLSELRGSRVDLRVPQRGDKRALMETVQRNATQALA 398 Query: 354 QKLSTE----ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 + + L++ + L P RIE YD SH + V MVV + K Sbjct: 399 LHKTRRGGDLTTRSQALQELQEALGLDEAPLRIECYDVSHTQETNVVASMVVFEDGLPKK 458 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLE-----------------RRFSQLIKNEENLN-- 450 YR+F + + D AM ++L R ++ + E+ Sbjct: 459 ADYRRFAVRGEEGGVDDTRAMREVLLRRFRRVRADDARDQPPGATRDERITEGEDGTEVE 518 Query: 451 -------------FHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISI 497 + F P +V++DGG+ Q+ AA L V + + + + Sbjct: 519 TSGAVGGEVLAGIDPDTGRPRRFAYTPQLVVVDGGQPQVEAAARALADAGVVD-VALCGL 577 Query: 498 AKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSP 556 AK + E + + +VL P L+ +QR+RDEAHRFAIT HR +R K S Sbjct: 578 AKRLE-----EVWLPGEAHPVVLPRTSPGLFLLQRVRDEAHRFAITYHRSKRSKAMTTSA 632 Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 LD + G+G RK LL+ FG+VK + ++ E +A++ G+ + A + + Sbjct: 633 LDGVPGLGQARKTALLRHFGSVKKLRAATAEEVAAVPGMGPRTARAVVEALAGGAPES 690 >gi|320334469|ref|YP_004171180.1| UvrABC system protein C [Deinococcus maricopensis DSM 21211] gi|319755758|gb|ADV67515.1| UvrABC system protein C [Deinococcus maricopensis DSM 21211] Length = 633 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 184/632 (29%), Positives = 301/632 (47%), Gaps = 47/632 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P GVY ++G +Y+GKA NL+ R+ + + + + T + ++ F Sbjct: 26 LPTQSGVYIFRSVSGTPIYIGKAKNLRARVTQHFKAGGKSGKFTR---EAASLEFITARN 82 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 EVEAL+LEAN+IK+ +P +N+LL+DDK +P++ +T + P L R GSY+GP+ Sbjct: 83 EVEALVLEANLIKQHRPHYNVLLKDDKHYPFLKLT-SEEFPMLIVTRRVLKDGGSYYGPY 141 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 AV + N + F LR + + + RPCL F + RC GPC +Y V Sbjct: 142 PDASAVRRVKNLVDTMFPLRKNSGIPLQKKPRPCLNFHMGRCLGPCVDAADRAEYARAVD 201 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH----IQNHNDSIYNR 241 + K L G ++ + M A LK+D+E A RDR+ A+ Q+ S Sbjct: 202 DVKALLEGRAGSVVTGLKERMRDAALKQDFELAARLRDRVQAVEKLFGTEQHAFVSDETD 261 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-CP 300 +D L A +Q G+ G FL +S ++L F++ +YT P Sbjct: 262 LDFLGLAVAGEYAMVQLFRMRGGRVVGRDKRFLTNAGDSERGEVLGAFVQDYYTQATHVP 321 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR--SHTQKLST 358 +L+ EE E+ +L ++ G KV++ P +G+K +IE A NA L Sbjct: 322 PLVLIPEEFEDAALWSEFLSQKAGRKVELRTPHRGDKVDLIEMAQRNAQNGLESEMLLLE 381 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + L+ + ALP P RIE YDNS++ G + V MVV K ++R+F + Sbjct: 382 KRGDHPGLEALKEVLALPERPWRIEGYDNSNLFGTNIVSGMVVFEGGRARKGEHRRFKVR 441 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + DD A MR + RRFS + ++ PD++++DGG+GQ++A Sbjct: 442 G--LDHPDDYAAMRQTVHRRFSGSLSDK--------------LPLPDLILIDGGRGQVNA 485 Query: 479 AQGVLKKLNVENRITIISIAKGPKR-------------SAGMEKFFVKKGEALVLNMRDP 525 A L++LN+ I ++ +AK +R G E + L+L P Sbjct: 486 ALDALRELNLH--IPLVGLAKREERIVLPSIYGAQWWLDTGTEV---GRNRELLLPETHP 540 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 L + +RDE H +AIT HRK R + S D++ GIG R+ LL+ F +++ ++ + Sbjct: 541 ALRTLIGVRDEVHHYAITYHRKLRGEGMLRSVFDDLPGIGQKRQDALLEHFSSLEDLASA 600 Query: 585 SPETLASIEGISKKIACKIYNHFH-KNTSHTP 615 S E +A + G++ + A + + + P Sbjct: 601 SVEDIARVPGMNARAAQAVKAFLQAREQNSAP 632 >gi|77412862|ref|ZP_00789067.1| excinuclease ABC, C subunit [Streptococcus agalactiae 515] gi|77161158|gb|EAO72264.1| excinuclease ABC, C subunit [Streptococcus agalactiae 515] Length = 583 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 171/611 (27%), Positives = 293/611 (47%), Gaps = 41/611 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y D G ++YVGKA NL+ R+KSY H +++T + ++S+I + + VT + Sbjct: 2 LPDSPGCYLHKDKNGTIIYVGKAKNLKNRVKSYFHGSHNT-KTELLVSEIEDFEYIVTTS 60 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 EALLLE N+I+ P++NI L+DDKS+PYI IT+ + P L R G+YFGP+ Sbjct: 61 NTEALLLEINLIQENMPKYNIRLKDDKSYPYIKITN-ERYPRLMITRQVKKSDGTYFGPY 119 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 A + L R F + C + + C + + +C+ + + + Sbjct: 120 PDSGAATEIKRLLDRLFPFKKCTNP----ANKVCFYYHLGQCNAHTVCQTNKAYWDSLRE 175 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 + K+FL+G ++ + + M A + ++E A +RD + A+S ++ I+ M Sbjct: 176 DVKQFLNGKDNKIVNGLTEKMKSAAMTMEFERAAEYRDLIEAISLLRTKQRVIHQDMKDR 235 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F + +K C+Q F G+ +E + T P+ Sbjct: 236 DVFGYFVDKGWMCVQVFFVRNGKLIQRDVNMFPYYNEPEEDFLTYIGQFYQDTKHFLPKE 295 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358 + + ++ + S+ I KI P++GEK++++ A+ NA + Sbjct: 296 VFIPQDIDAKSVETIV-------GCKIVKPQRGEKKQLVNLAIKNARVSLQQKFDLLEKD 348 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 +++ +P RIE +DNS+I G S V MVV K YRKF + Sbjct: 349 IRKTHGAIENLGNLLNIPKPV-RIEAFDNSNIQGTSPVAAMVVFVNGKPSKKDYRKFKIK 407 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V DD A MR V+ RR+S+++K+ + PD++++DGG+GQ++ Sbjct: 408 T--VIGPDDYASMREVIHRRYSRVLKDG--------------LTPPDLIVIDGGQGQVNI 451 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ V+ + + I I + K K E F E + L + + R++DE H Sbjct: 452 ARDVI-ENQLGLAIPIAGLQKNDKHQT-HELLFGDPLEVVELPRNSEEFFLLHRIQDEVH 509 Query: 539 RFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ R K ++S LD I G+GP RK+LL++ F ++ I ++ E + GI + Sbjct: 510 RFAITFHRQLRSKNSFSSKLDGITGLGPKRKQLLMKHFKSLPNIQKAEIEDIIM-CGIPR 568 Query: 598 KIACKIYNHFH 608 +A + + + Sbjct: 569 TVAESLRDSLN 579 >gi|153005348|ref|YP_001379673.1| excinuclease ABC subunit C [Anaeromyxobacter sp. Fw109-5] gi|189038018|sp|A7HD93|UVRC_ANADF RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|152028921|gb|ABS26689.1| excinuclease ABC, C subunit [Anaeromyxobacter sp. Fw109-5] Length = 716 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 197/671 (29%), Positives = 314/671 (46%), Gaps = 82/671 (12%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHR--ITHMISQINNIRF 60 +++P PG Y M D G V+YVGKA +L+ R++SY ++ R + + + ++ Sbjct: 9 LDELPAEPGCYLMKDRRGAVVYVGKASSLRSRVRSYFDASRGDDRAFVALLDELLGDVEV 68 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYK--HRDSSTIQ 118 VT +E EA+LLE +IKR +PRFNI LRDDK F + + ++H P L R+ Sbjct: 69 IVTRSEKEAVLLENELIKRHRPRFNIRLRDDKDFIVLRLDERHAFPRLEVRRAREPRRAG 128 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 YFGP++S ++ +T+ + R F LR+C D VF HR RPC+L+QIKRC PC ++ Sbjct: 129 ARYFGPYSSASSIRETLRVVNRHFQLRTCTDHVFEHRKRPCILYQIKRCPAPCVYDVPEA 188 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + V +A +FL G L E++ M++A +E A RD+L A+ + Sbjct: 189 EYRQSVEDAIEFLEGRETELVERLHGRMDEAADALRFEDAARLRDQLQAVERSLEKQRVL 248 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D LY +Q G+ + + ++ + E + + LS FL +Y Sbjct: 249 MADRADRDVVGLYREGPDLVVQVLAMRAGKLQDSRSY-PFHEQEFPDEETLSSFLSLYYE 307 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 PE IL+ E E L ++ G +V++ P++G K ++E A NA + Sbjct: 308 QNAAPEEILVPVEPAEVDALADVLSERRGRRVRLLTPQRGAKADLLEVAARNAEQGFRSW 367 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 + + L T+ L P+ +E YD S G AVG V + K YR++ Sbjct: 368 HEKDERREQALAALTRALHLARPPRWMECYDISTFQGALAVGSGVSFRDGEPDKACYRRY 427 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 + V QDD AM+ V+ RR + + ++PD++++DGGKGQ Sbjct: 428 KVKG--VAGQDDFAMLYEVVSRRLRRALGE---------------GAFPDLLVIDGGKGQ 470 Query: 476 LSAAQGVLKKLNVENR----------ITIISIAK---------GPKR------------- 503 L+AA K L V + + ++ +AK G R Sbjct: 471 LNAALAAAKDLGVPTKPSPGNEGAPFVELVGLAKSRLVDAPALGTTRVIGRRGRGGGASR 530 Query: 504 ------------------------SAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 + F + + +VL L+ + RLRDEAHR Sbjct: 531 AASGAAALADAAEAQEHGFVSELARSPERVFLPGRKDPVVLRQNSAELFLLARLRDEAHR 590 Query: 540 FAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAIT HRK RR++ S L+EI+GIG RKR LL+ FG ++ + ++ + ++ ++G K Sbjct: 591 FAITFHRKLRRERNFQSVLEEISGIGEGRKRALLRHFGALRRVKEATLDEISQVDGFGPK 650 Query: 599 IACKIYNHFHK 609 A ++ FH Sbjct: 651 QARAVFEFFHP 661 >gi|146298489|ref|YP_001193080.1| excinuclease ABC, C subunit [Flavobacterium johnsoniae UW101] gi|189038052|sp|A5FM03|UVRC_FLAJO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|146152907|gb|ABQ03761.1| excinuclease ABC, C subunit [Flavobacterium johnsoniae UW101] Length = 597 Score = 475 bits (1222), Expect = e-131, Method: Composition-based stats. Identities = 181/626 (28%), Positives = 307/626 (49%), Gaps = 52/626 (8%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + +P+ PGVYQ D G++LYVGKA NL+KR+ SY + + T + ++ +I I+ Sbjct: 8 LQILTLPDNPGVYQYYDKDGKILYVGKAKNLKKRVSSYFNKIHDTAKTNVLVKKIVTIKH 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE +ALLLE N+IK L+PR+N+LLRDDKS+P+I I K ++ R Sbjct: 68 IVVPTETDALLLENNLIKTLQPRYNVLLRDDKSYPWICI-KKEPFSRIFLTRRMVKDGSE 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCAD-----SVFRHRTRPCLLFQIKRCSGPCTGEI 175 YFGP+ + V ++ ++ + LR+C ++ + + CL + I C GPC G Sbjct: 127 YFGPYTNFKMVYTILDLIKELYPLRTCNYDLSQSNIDSGKFKVCLEYHIGNCKGPCEGLE 186 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 E+Y V+ ++ L G + + MN +E A ++++ L + Q+ + Sbjct: 187 PLEEYQRQVNAIREILKGNFKESLKDFKKLMNNYAQNLQFEEAQKIKEKIEVLENYQSRS 246 Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 +D FS+ +++ A + G + T +K + ++ ++L + + Sbjct: 247 TIVNPKITNIDVFSIISDESAAYVNFLQISHGSIIRSHTLEMKKKLDESDEELLELAIIE 306 Query: 293 FYTDKPC-PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 + I++ E + +K TVP+ G+K++I++ ++ NA Sbjct: 307 LRERFQLMSKEIIVPFEIDLGE------------NIKTTVPQLGDKKQILDLSIRNAKFY 354 Query: 352 HTQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405 ++L + I+ K LP P+ IE +DNS+I G + V VV + Sbjct: 355 RIEQLKQLQIVDPDRHVNRIMAQMQKDLRLPVEPRHIECFDNSNIQGTNPVAACVVFKDG 414 Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465 K YR FN+ V+ DD A M ++ RR+ +L+ + L P Sbjct: 415 KPSKKDYRHFNVKT--VEGPDDFASMTEIVYRRYKRLLDENQPL--------------PQ 458 Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525 ++I+DGGKGQLS+A + +L + ++ II IAK + E F+ L L+ + Sbjct: 459 LIIIDGGKGQLSSALKSIDELGLRGKVAIIGIAKRLE-----ELFYPGDSIPLYLDKKSE 513 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 L IQ+LR+EAHRF IT HR +R K A S ++ I GIG L+Q F +VK + + Sbjct: 514 TLKVIQQLRNEAHRFGITFHRDKRSKAALNSSVESIPGIGEKTMLTLIQHFKSVKRLKLA 573 Query: 585 SPETLASIEGISKKIACKIYNHFHKN 610 + + ++++ G+SK A KI + + N Sbjct: 574 TEKEISAVVGVSK--AKKIVDFYKTN 597 >gi|25011343|ref|NP_735738.1| excinuclease ABC subunit C [Streptococcus agalactiae NEM316] gi|81446312|sp|Q8CX26|UVRC_STRA3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|24412881|emb|CAD46953.1| excinuclease ABC (subunit C) [Streptococcus agalactiae NEM316] Length = 593 Score = 475 bits (1222), Expect = e-131, Method: Composition-based stats. Identities = 172/615 (27%), Positives = 294/615 (47%), Gaps = 41/615 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D G ++YVGKA NL+ R+KSY H +++T + ++S+I + + Sbjct: 8 KLELLPDSPGCYLHKDKNGTIIYVGKAKNLKNRVKSYFHGSHNT-KTELLVSEIEDFEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + EALLLE N+I+ P++NI L+DDKS+PYI IT+ + P L R G+Y Sbjct: 67 VTTSNTEALLLEINLIQENMPKYNIRLKDDKSYPYIKITN-ERYPRLMITRQVKKSDGTY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ A + L R F + C + + C + + +C+ + + + Sbjct: 126 FGPYPDSGAATEIKRLLDRLFPFKKCTNP----ANKVCFYYHLGQCNAHTVCQTNKAYWD 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + K+FL+G ++ + + M A + ++E A +RD + A+S ++ I+ Sbjct: 182 SLREDVKQFLNGKDNKIVNGLTEKMKSAAMTMEFERAAEYRDLIEAISLLRTKQRVIHQD 241 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 M D F + +K C+Q F G+ +E + T Sbjct: 242 MKDRDVFGYFVDKGWMCVQVFFVRNGKLIQRDVNMFPYYNEPEEDFLTYIGQFYQDTKHF 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ + + ++ + S+ I KI P++GEK++++ A+ NA + Sbjct: 302 LPKEVFIPQDIDAKSVETIV-------GCKIVKPQRGEKKQLVNLAIKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +++ +P RIE +DNS+I G S V MVV K YRK Sbjct: 355 LEKDIRKTHGAIENLGNLLNIPKPV-RIEAFDNSNIQGTSPVAAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + V DD A MR V+ RR+S+++K+ + PD++++DGG+G Sbjct: 414 FKIKT--VIGPDDYASMREVIHRRYSRVLKDG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+ + + I I + K K E F E + L + + R++ Sbjct: 458 QVNIARDVI-ENQLGLAIPIAGLQKNDKHQT-HELLFGDPLEVVELPRNSEEFFLLHRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+LL++ F ++ I ++ E + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSKLDGITGLGPKRKQLLMKHFKSLPNIQKAEIEDIIM-C 574 Query: 594 GISKKIACKIYNHFH 608 GI + +A + + + Sbjct: 575 GIPRTVAESLRDSLN 589 >gi|319442103|ref|ZP_07991259.1| excinuclease ABC subunit C [Corynebacterium variabile DSM 44702] Length = 677 Score = 475 bits (1222), Expect = e-131, Method: Composition-based stats. Identities = 188/659 (28%), Positives = 304/659 (46%), Gaps = 71/659 (10%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFTVT 63 +P PGVY D RVLYVGKA NL+ R+ +Y H RI M+ +++++TV Sbjct: 13 TIPTSPGVYTFRDTDDRVLYVGKAKNLRSRLSNYFQDPAHLNPRIRTMVHSADHVQWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E+EAL LE IK+ PR+N++ RDDK++P + ++ K + P + +R YFG Sbjct: 73 SSELEALNLEYTWIKKFAPRYNVMYRDDKTYPMLAVSVKEQYPRAFLYRGPRKKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P+ A+ +T+ SL R F +R+C V+R RPCLL I RCS PC G +S ++ Sbjct: 133 PYPKAWAIRETLESLTRVFPVRTCTAGVYRRHEQLGRPCLLGYIDRCSAPCVGRVSPSQH 192 Query: 181 MEFVHEAKKFLSG-GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 ME V FL+G + + M A D+E A RD+L A+ ++ Sbjct: 193 MELVDGFCSFLAGGNTERVMRDVRHEMEGAAENLDFERAASLRDQLGAMDSAMEKQSVVF 252 Query: 240 NRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN-------AQILSYF 289 + D + + +Q G+ RG + ++ + ++ +L+ F Sbjct: 253 SDNTDADVIATAGDDLETAVQIFHVRGGRIRGQRGWVVENATGDSDVTGEAGTPALLADF 312 Query: 290 LRQFYTD--------------------------KPCPENILLSEEAEETSLL---EISFF 320 L QFY +P P IL+ + +E + Sbjct: 313 LTQFYGQSAELSDATESAVGGNSRAAASREVTLEPVPREILVPVDPDEIDDIDGLSAWLT 372 Query: 321 KQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----STEISHQMILKDFTKKFALP 376 G +V + P++G+K+ +++ A NA ++ Q + L++ + + Sbjct: 373 DLRGARVTVRFPQRGDKKALMDTARENAAQALRQHKLARVGDITARSSALEELREALWMD 432 Query: 377 HIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVL 435 P RIE D SHI G V +VV + K+ YR++ + DD A + V+ Sbjct: 433 EPPLRIECTDISHIQGTDVVASLVVFEDGLPRKSDYRRYRIREAAGDGHSDDVASIAEVV 492 Query: 436 ERRFSQLIK---------------NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 RRF + + E +K F P + I+DGG+ Q+ AAQ Sbjct: 493 RRRFQRYQQDKTAVPAGDDAGDRLEGEVSAAEAEKGAKRFAYPPQLFIVDGGRPQVEAAQ 552 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 VL +L V + +T++ IAK + E + +++ P LY +Q++RDEAHRF Sbjct: 553 QVLDELGVTD-VTLVGIAKRLE-----ELWVPGDEYPVIVARNSPALYLVQQIRDEAHRF 606 Query: 541 AITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 AIT HR R K+ S LDE+ G+GP R+ L+ +FG+V + + E +A++ G K Sbjct: 607 AITFHRASRGKRMTRSVLDEVPGLGPKRRSQLVTAFGSVAKVREAGEEAVAALPGFGPK 665 >gi|189460229|ref|ZP_03009014.1| hypothetical protein BACCOP_00866 [Bacteroides coprocola DSM 17136] gi|189433090|gb|EDV02075.1| hypothetical protein BACCOP_00866 [Bacteroides coprocola DSM 17136] Length = 618 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 172/618 (27%), Positives = 312/618 (50%), Gaps = 46/618 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PG+YQ L+ G ++YVGKA NL++R+ SY + + + ++S+I +IR+ V Sbjct: 32 NLPSTPGIYQYLNKEGVIIYVGKAKNLKRRVYSYFSKEHQSAKTRILVSKIADIRYIVVN 91 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE N+IK+ KPR+N+LL+DDKS+P I +++ P ++K R +Y+GP Sbjct: 92 TEEDALLLENNLIKKYKPRYNVLLKDDKSYPSICVSN-EYFPRVFKTRQIIRNGSTYYGP 150 Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + +++ ++ +++ + LR+C +++ + + CL + IK C GPC G S ++ Sbjct: 151 YSHIPSMQAVLDLIKKLYPLRTCHLALTPENIRQGKFNVCLEYHIKNCKGPCIGMQSHDE 210 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237 YM+ + + K+ L G + + + + M + +E A +++ + + ++ Sbjct: 211 YMDNIAQVKEILKGNTQAISDALMKEMMSLAEEMKFEEAQKVKEKYELIESYRAKSEVVS 270 Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 I + +D FS+ ++N A I G TF K T ++L + + Sbjct: 271 SILHNIDVFSIEMDENSAYINYLHITNGCINQAFTFEYKKRLNETKEELLQLGIIEMRER 330 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 ++ + L V T+P++G+K+ ++E +L+N + +L Sbjct: 331 YKSCSREIIVPFELDMELN----------NVTFTIPQRGDKKHLLELSLLNVKQYKVDRL 380 Query: 357 ST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 E +LK+ ++ + +P IE +DNS+I G AV VV + K Sbjct: 381 KQAEKLNPEQRSVRLLKEIQEQLQMDKMPMHIECFDNSNIQGSDAVAACVVFKKARPSKK 440 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YRK+N+ V DD A M+ V+ RR+S++++ + L PD+++ D Sbjct: 441 DYRKYNIKT--VVGPDDYASMQEVVRRRYSRILEEQGEL--------------PDLILTD 484 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ+ + V++ ++ +I I +AK K E F + + P+ + + Sbjct: 485 GGKGQMEVVRQVIED-ELKLQIPIAGLAKNNKHRTS-EVLFGFPPMTIGIKQGTPLFHLL 542 Query: 531 QRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 + ++DE HRFAIT HR +R K+ S LD I GIG RK LL+ F +V I +++ E L Sbjct: 543 ENIQDEVHRFAITFHRDKRSKSQIASALDGIKGIGEKRKTALLKEFKSVARIKQATVEEL 602 Query: 590 ASIEGISKKIACKIYNHF 607 A++ I + A + Sbjct: 603 AAV--IGEAAAKSVKEAL 618 >gi|300775241|ref|ZP_07085103.1| excision endonuclease subunit UvrC [Chryseobacterium gleum ATCC 35910] gi|300505981|gb|EFK37117.1| excision endonuclease subunit UvrC [Chryseobacterium gleum ATCC 35910] Length = 597 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 192/625 (30%), Positives = 302/625 (48%), Gaps = 49/625 (7%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + +P PGVY+ D ++LYVGKA NL+KR+ SY + N +RI M+S+I + Sbjct: 7 LQLKTLPSEPGVYRYYDKNEQLLYVGKAKNLKKRVLSYFNKNLSGYRIKIMVSKIQRLET 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T+ +E +ALLLE N+IK +P +N++L+DDK++P+I I P ++ R+ Sbjct: 67 TIVNSEYDALLLENNLIKEHQPFYNVMLKDDKTYPWICI-KNEDFPRIFLTRNVIKDGSE 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-----VFRHRTRPCLLFQIKRCSGPCTGEI 175 Y+GP+A V + +++++ + LR+C + + + + CL + IK C GPC Sbjct: 126 YYGPYAKVRPAKILLDTIKHIYKLRTCNLNLSPAKIAEGKYKVCLEYHIKNCEGPCEDVE 185 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 S E Y E + + + G KE + M + +E A I ++RL L Q N Sbjct: 186 SKEDYDEKIDAIRGIIKGDFRKAKEYLVNQMMKLASNLKFEEAQIIKERLDILEDYQAKN 245 Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 + +D F + ++ A + G + T +K E T+ I+ L + Sbjct: 246 TVVNPNIDDVDVFGMTSDETAAYVNFFKIRNGNIIQSFTTEIKKILEETDEDIMEEALIE 305 Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 + +L VK+ VPK G+K++I+E + NA Sbjct: 306 IRQKFSS----------DSKEVLLPFHLSVEIPNVKLIVPKVGDKKRIVELSEKNAKEYR 355 Query: 353 TQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 +KL E I+ + K +P P+ IE +DNS+I G + V VV + Sbjct: 356 LEKLKQVQIVDPERHTNRIMAEMQKLLRMPVEPRHIEGFDNSNIQGTNPVSACVVFKDGR 415 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 K YR F HP V+ +D A M V+ RR+ +++ ENL P + Sbjct: 416 PSKADYRIF--HPKTVEGPNDFATMEEVIYRRYKRMLDEGENL--------------PQL 459 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526 +++DGGKGQLS+A L+ L + +ITI+ IAK + E FF + L L+ + Sbjct: 460 ILIDGGKGQLSSAVKSLRLLGLYGKITIVGIAKRLE-----EIFFPEDPIPLYLDKKSET 514 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 L +QR+RDEAHRF + HR RRK + S L+EI G+G LLL +VK I ++ Sbjct: 515 LKILQRVRDEAHRFGVKHHRTRRKNSTIKSELEEIPGVGEKTIELLLSKLKSVKRIKEAN 574 Query: 586 PETLASIEGISKKIACKIYNHFHKN 610 ETL I G K A I+ F+ N Sbjct: 575 LETLEEILG--KSKAKVIWEFFNAN 597 >gi|284038101|ref|YP_003388031.1| excinuclease ABC, C subunit [Spirosoma linguale DSM 74] gi|283817394|gb|ADB39232.1| excinuclease ABC, C subunit [Spirosoma linguale DSM 74] Length = 602 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 181/621 (29%), Positives = 304/621 (48%), Gaps = 53/621 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTVT 63 ++P PGVY+ D G V+YVGKA +L+ R+ SY S H + ++SQI I FT+ Sbjct: 12 KVPHEPGVYRYFDATGEVIYVGKAKDLKNRVSSYFTNSKGHDRKTLRLVSQIRKIEFTIV 71 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE +ALLLE +IKR +P+FNILLRDDK++P++ +T++H P + R G+++G Sbjct: 72 NTEFDALLLENQLIKRYQPKFNILLRDDKTYPFVCVTNEH-FPRVVTTRRIDRKLGTFYG 130 Query: 124 PFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 PFA++ + ++ + F +R+C +++ + + CL + I C GPC G+ + E Sbjct: 131 PFANLKPMYTVLDMFSQLFTIRTCNYNLAPENIEAGKYKVCLEYHIGNCKGPCEGKQAEE 190 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 Y + + L G +E M +A +E A ++D++ L Q+ + Sbjct: 191 DYNSDIEQVHHILKGNLKPAQEYFKNQMVEAANDLAFEQAQKYKDKMEVLQRFQSKSTVV 250 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D FS+ ++ A I G T T +K + T+ +++ + +F Sbjct: 251 NPKIADADVFSIASDEVSAYINFMKVVNGTIVQTHTVEIKKKLDETDQDLMAMMIIEFRD 310 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA------- 348 ++S + L +TVP+ G+K+K+++ +L N Sbjct: 311 QYGSQAKEIISNIPLDVDLKAE-----------VTVPQIGDKKKLLDMSLKNVLYFRRER 359 Query: 349 -HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 R+ + + +L + L +P RIE +DNS+I G + V MV Sbjct: 360 QERAAAEATANASKKDRVLIRLKQDLQLKTLPNRIECFDNSNIQGTNPVSAMVCFIGGKP 419 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 +YR F++ V +D A M V+ RR+++++ + L PD++ Sbjct: 420 ANKEYRHFSIKT--VIGPNDFASMYEVVTRRYTRVLTEDTGL--------------PDLI 463 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPIL 527 ++DGGKGQLSAA LK L++ ++ II IAK + E +F + L ++ + L Sbjct: 464 VIDGGKGQLSAACDALKDLDLYGKVPIIGIAKRLE-----EIYFPEDNLPLYIDKKSESL 518 Query: 528 YFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586 IQR+RDEAHRFAIT HR +R + + S L+ + G+G LL+ F V I +S Sbjct: 519 KLIQRIRDEAHRFAITYHRDKRSRNSLISELENVEGVGKKTAAKLLKHFKGVTKIREASF 578 Query: 587 ETLASIEGISKKIACKIYNHF 607 + +A + G K A K+ +F Sbjct: 579 DEVAEVVG--KDRAVKLKQYF 597 >gi|308234590|ref|ZP_07665327.1| excinuclease ABC, C subunit [Atopobium vaginae DSM 15829] gi|328944355|ref|ZP_08241819.1| UvrABC system protein C [Atopobium vaginae DSM 15829] gi|327491274|gb|EGF23049.1| UvrABC system protein C [Atopobium vaginae DSM 15829] Length = 666 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 178/635 (28%), Positives = 296/635 (46%), Gaps = 49/635 (7%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 EQ+P PG Y + + V+YVGKA NL+ R+ Y+ ++ +I M+ ++ + + V Sbjct: 48 EQVPMLPGCYLWKNASDIVIYVGKAKNLRARMLQYVTLSDDRLKIPRMMLEVASFDYVVV 107 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E EAL+LE N+I++ KP +N+ +DDKS+PYI +T PA+ R+ YFG Sbjct: 108 SSEHEALVLERNLIEQYKPYYNVDFKDDKSYPYIALTKNSLFPAIKYTREHHKRGTKYFG 167 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---------------------RTRPCLLF 162 P+ V A +TI L++ L S + + ++ R + C + Sbjct: 168 PYTDVYAARETIEILRKAVPLCSASCTEWKRLERYFKKHADEKELAPFSLAQRGKACFDY 227 Query: 163 QIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHR 222 +++ G C G I ++Y + V + FLSG ++ + + M A ++E A + Sbjct: 228 HMQKAPGACIGRIGVDEYRQNVALIEDFLSGKRKHILDVLQERMRAAAQDLEFEKAGRIK 287 Query: 223 DRLAALSHIQNHNDSIYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE 279 RL L + + +++ MDC Y + ++ G+ T F L + Sbjct: 288 HRLQVLQALNDKQKVVFSSRLSMDCIGFYREETISAACVFIVREGRVIRTNEFILNKGLD 347 Query: 280 STNAQILSYFLRQFYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKR 338 + ++ F++++Y P I L E + L ++ G V VP++GEKR Sbjct: 348 VSKNELQESFIKRYYHQTADIPAEINLDEMVFDVDALSNWLSEKRGSHVTFRVPQRGEKR 407 Query: 339 KIIEQALINA----HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCS 394 ++ + NA R + +E + L AL P RIE +D S + G Sbjct: 408 DLLAMVIQNASCALKRYSVRTGYSEDRTNLALTQLESALALDRAPLRIECFDISTLHGYF 467 Query: 395 AVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPK 454 V M+V K+QYR+F + + D +M ++ R + + N+ Sbjct: 468 TVASMIVFTNGRADKSQYRRFIIKTPLDEANDFVSMQEVLSRRYSKKTMSNK-------- 519 Query: 455 KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK 514 F PD+++LDGGK QLSAA L L+++ I + +AK + E F Sbjct: 520 ----RFGKKPDLLVLDGGKPQLSAALSQLHALDLD--IPVCGLAKSDE-----EVFVPWD 568 Query: 515 GEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQ 573 +VL LY I+++RDE+HRFAIT HR+ R K S LD I G+GP RK LL Sbjct: 569 TTPIVLPSGSASLYLIKQVRDESHRFAITFHRELRDKAMTKSILDSIEGVGPKRKHALLT 628 Query: 574 SFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 FG++K + +S +A + GIS ++A ++ Sbjct: 629 HFGSMKRLRAASVRDIAQVSGISAQVAQNVWEVLQ 663 >gi|251782607|ref|YP_002996910.1| excinuclease ABC subunit C [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391237|dbj|BAH81696.1| uvrABC system protein C [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 594 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 175/613 (28%), Positives = 285/613 (46%), Gaps = 39/613 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPDSPGCYLHKDKEGTIIYVGKAKNLKNRVRSYFRGSHDT-KTELLVSEIADFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + EALLLE N+I+ P++NI L+DDKS+P+I IT+ P L R G Y Sbjct: 67 VTESNTEALLLEINLIQENMPKYNIKLKDDKSYPFIKITN-ETFPRLLITRQIKKNDGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + L R F + C + V + C + + +C + Sbjct: 126 FGPYPDSYTANEVKKLLDRIFPFKKCKNPV----NKVCFYYHLGQCCAHTICHTDKAYWD 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 V + K FL+G + + + + M A+ + +E A +RD ++ ++ ++ + Sbjct: 182 GLVEDVKHFLNGKDDKIIDGLRAKMLAASEEMAFERAAEYRDLISGIATMRTKQRVMSKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F + +K C+Q F G+ +E+ + Sbjct: 242 LQDRDIFGYFVDKGWMCVQVFFVRQGKLIQRDVNLFPYYNEAEEDFLTYMGQFYQDKQHF 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH---RSHTQK 355 P+ + + E +E + I K P++GEK++++ A NA + Sbjct: 302 IPKEVFIPEAIDEELVAAIVPTKIIK-------PQRGEKKQLVALATKNARVSLQQKFDL 354 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L +I D P RIE +DNS+I G S V MVV + K YRKF Sbjct: 355 LEKDIKKTSGAIDNLGYLLGIDKPVRIEAFDNSNIQGTSPVAAMVVFVDGKPSKKDYRKF 414 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 + V DD A MR V+ RR+S++ PD++I+DGG GQ Sbjct: 415 KIKT--VVGPDDYASMREVIFRRYSRVKHEG--------------LVAPDLIIIDGGLGQ 458 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 ++AA+ V++ + I I + K K E F K E + L + + R++D Sbjct: 459 VNAAREVIED-RLGLTIPIAGLQKNDKHQT-HELLFGKPLEVVPLPRNSEEFFLLHRIQD 516 Query: 536 EAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E HRFAIT HR+ R K ++S LD+I G+GP RK++LL+ F T+ I+ +SP+ + S+ G Sbjct: 517 EVHRFAITFHRQVRSKNSFSSKLDKIPGLGPKRKQILLKHFKTMTAIAAASPDEIHSL-G 575 Query: 595 ISKKIACKIYNHF 607 I + +A ++ H Sbjct: 576 IPRAVASAVHQHL 588 >gi|319745202|gb|EFV97521.1| excinuclease ABC subunit C [Streptococcus agalactiae ATCC 13813] Length = 593 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 172/615 (27%), Positives = 293/615 (47%), Gaps = 41/615 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D G ++YVGKA NL+ R++SY H +++T + ++S+I + + Sbjct: 8 KLELLPDSPGCYLHKDKNGTIIYVGKAKNLKNRVRSYFHGSHNT-KTELLVSEIEDFEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + EALLLE N+I+ P++NI L+DDKS+PYI IT+ + P L R G+Y Sbjct: 67 VTTSNTEALLLEINLIQENMPKYNIRLKDDKSYPYIKITN-ERYPRLMITRQVKKSDGTY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ A + L R F + C + + C + + +C+ + + + Sbjct: 126 FGPYPDSGAATEIKRLLDRLFPFKKCTNP----ANKVCFYYHLGQCNAHTVCQTNKAYWD 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + K+FL+G ++ + + M A + ++E A +RD + A+S ++ I+ Sbjct: 182 SLREDVKQFLNGKDNKIVNGLTEKMKSAAMTMEFERAAEYRDLIEAISLLRTKQRVIHQD 241 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 M D F + +K CIQ F G+ +E + T Sbjct: 242 MKDRDVFGYFVDKGWMCIQVFFVRNGKLIQRDVNMFPYYNEPEEDFLTYIGQFYQDTKHF 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ + + ++ + S+ I KI P++GEK++++ A+ NA + Sbjct: 302 LPKEVFIPQDIDAKSVETIV-------GCKIVKPQRGEKKQLVNLAIKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +++ +P RIE +DNS+I G S V MVV K YRK Sbjct: 355 LEKDIRKTHGAIENLGNLLNIPKPV-RIEAFDNSNIQGTSPVAAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + V DD A MR V+ RR+S+++K+ + PD++++DGG+G Sbjct: 414 FKIKT--VIGPDDYASMREVIHRRYSRVLKDG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+ + I I + K K E F E + L + + R++ Sbjct: 458 QVNIARDVI-ENKFGLAIPIAGLQKNDKHQT-HELLFGDPLEVVELPRNSEEFFLLHRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+LL++ F ++ I ++ E + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSKLDGITGLGPKRKQLLMKHFKSLPNIQKAEIEDIIM-C 574 Query: 594 GISKKIACKIYNHFH 608 GI + +A + + + Sbjct: 575 GIPRTVAESLRDSLN 589 >gi|55823221|ref|YP_141662.1| excinuclease ABC subunit C [Streptococcus thermophilus CNRZ1066] gi|81559227|sp|Q5LZ62|UVRC_STRT1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|55739206|gb|AAV62847.1| excinuclease ABC subunit C [Streptococcus thermophilus CNRZ1066] Length = 595 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 171/618 (27%), Positives = 296/618 (47%), Gaps = 39/618 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPSNPGCYLHKDKFGNIIYVGKAKNLKNRVRSYFRGSHDT-KTELLVSEIADFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+I+ P+FNI L+D KS+P+I IT K P L R G Y Sbjct: 67 VTESNIEALLLEINLIQENMPKFNIRLKDGKSYPFIKIT-KELYPRLLITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ A + L R F + C + + C + I +C + + Sbjct: 126 FGPYPDAGAANEIKKLLDRIFPFKKCKNP----ANKVCFYYHIGQCKAHTICHTTEAYWQ 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---I 238 V + K FL+G + + ++ M + + ++E A +RD + A+S ++ Sbjct: 182 GLVEDVKNFLNGHDDKIVNQLKAKMKDMSDQMEFERAAEYRDLIEAVSTLRTKQRVIRQD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ +++ + + Sbjct: 242 MQDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDAEEDFLTYMGQFYLDSRHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ I + + ++ S+ + + VK+ P++GEK++++ A NA + Sbjct: 302 KPKEIFIPGDIDQESVEALVGDE-----VKVFKPQRGEKKQLVNLATKNARVSLTQKFDL 356 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 Q +++ K +P RIE +DNS+IMG S V MVV K +YRK Sbjct: 357 LEKDIAKTQGAIENLGKLMGIPTPV-RIESFDNSNIMGTSPVSAMVVFENGKPNKKEYRK 415 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V+ DD A MR V+ RR+S++ ++ + PD++I+DGG+G Sbjct: 416 YKIKT--VEGPDDYASMREVIRRRYSRVKRDG--------------LTPPDLIIIDGGQG 459 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ VL+ + I + + K K E F + L + + + R++ Sbjct: 460 QVNVAKDVLRN-ELNLSIPVAGLQKNDKHQT-NELLFGDPLRVIDLPRQSEEFFLLHRIQ 517 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD + G+GP RK+ LL++F ++ I ++S E + ++ Sbjct: 518 DEVHRFAITFHRQVRSKNSFSSKLDGVEGLGPKRKQKLLKNFKSMTAIQQASVEDIQAL- 576 Query: 594 GISKKIACKIYNHFHKNT 611 GI +K+A + + +++ Sbjct: 577 GIPEKVAQALLDKLSQDS 594 >gi|148239605|ref|YP_001224992.1| excinuclease ABC subunit C [Synechococcus sp. WH 7803] gi|147848144|emb|CAK23695.1| Nuclease subunit of the excinuclease complex (Excinuclease ABC subunit C) [Synechococcus sp. WH 7803] Length = 652 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 185/632 (29%), Positives = 299/632 (47%), Gaps = 27/632 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFT 61 +++P PG Y M D R+LYVGK+ +L+ R++SY S + + RI M+ QI +I F Sbjct: 15 LKEIPTEPGCYLMRDGDDRLLYVGKSKSLRSRVRSYFRSRHDLSPRIRLMVRQICDIEFI 74 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ--G 119 VT +E EAL LE+N+IK +P FN+LL+DDK +PY+ IT P ++ R Sbjct: 75 VTDSEAEALALESNLIKNQQPHFNVLLKDDKKYPYLCITWSEAYPRIFITRRRRFRSPLD 134 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++GP+ V + +T+ ++R F LR + RT CL + I RC G C +I+S+ Sbjct: 135 RFYGPYVDVGLLRRTLFLVKRVFPLRQRPRPLHPDRT--CLNYSIGRCPGVCQEKITSDD 192 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + + G + L+ + M++ + D+E+A RD+L L + Sbjct: 193 YHRTLRKVAMVFQGRSDELQTLLHAQMDRYAERLDFEAAAKIRDQLQGLDQLTADQKMSL 252 Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D ++ + LA +Q G+ G + ++ + + + Sbjct: 253 PDSSVSRDVIAMAGDDRLAAVQLFQMRAGKLVGRLGYLADASNQPSGLTLQKVIEEHYSQ 312 Query: 296 --DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 P +L+ + +L+E +Q KV+I PKQ +K +IE NA Sbjct: 313 VDSVEIPPELLVQHSLPQQTLIEEWLSEQRERKVQIHCPKQRQKADLIELVQRNADYELQ 372 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + + +D + LP P+RIE YD SHI G AV VV + K YR Sbjct: 373 RAKQGQEQQALATEDLAQLLELPVPPRRIEGYDISHIQGSDAVASQVVFIDGLPAKQHYR 432 Query: 414 KFNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENL--------NFHPKKQEYSFPSW 463 K+ + + ++ D M ++ RRF + + + + Q W Sbjct: 433 KYKIRSSSIRAGHSDDFMAMAEIMRRRFRRWARAKRDGVDVGALRQKGGSALQTDGLNDW 492 Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMR 523 PDVV++DGGKGQLSA L++L++ + I S+AK + E F + + L + Sbjct: 493 PDVVMIDGGKGQLSAVMEALRELDLHEDLNICSLAKQRE-----EIFLPGESQPLDTDQD 547 Query: 524 DPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMIS 582 + ++RLRDEAHRFA++ HR++R + S L +I G+GP R + LL F ++ I Sbjct: 548 QLGVALLRRLRDEAHRFAVSFHRQQRGERMKRSRLSDIPGVGPKRVKDLLAHFHSIDAIQ 607 Query: 583 RSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +S ETLA G+ +A I FH Sbjct: 608 LASVETLAKAPGVGLALARDIRRFFHPEEDTQ 639 >gi|307243307|ref|ZP_07525474.1| excinuclease ABC, C subunit [Peptostreptococcus stomatis DSM 17678] gi|306493325|gb|EFM65311.1| excinuclease ABC, C subunit [Peptostreptococcus stomatis DSM 17678] Length = 605 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 198/622 (31%), Positives = 322/622 (51%), Gaps = 41/622 (6%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFT 61 + +P PGVY M D G V+YVGKA +L+ R++ Y S+ NH+ ++ M+ I++ + Sbjct: 8 LKSLPASPGVYIMKDRYGNVIYVGKAVSLKNRVRQYFRSSKNHSDKVRSMVKNISSFEYI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 +T +E+EAL+LE N+IK+ KP++NILLRDDK++PYI +T P + K R + Y Sbjct: 68 MTDSELEALILECNLIKKYKPKYNILLRDDKTYPYIKVTVNEDYPRVLKVRRILKDKAKY 127 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCA---DSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 FGP+++V AV TI+ ++ + +R+C D R RPCL + IK+C GPCTG +S E Sbjct: 128 FGPYSNVFAVNDTIDIIRNIYPIRTCNIDMDKAIRTGMRPCLNYHIKKCIGPCTGIVSRE 187 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +YM+ + E FLSG L + M A+ D+E A +RD++ +L + Sbjct: 188 EYMDMIDEILLFLSGKEDKLVGILEEKMKLASQNLDFEEAASYRDKINSLKDVMEKQKIS 247 Query: 239 Y----NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D ++ + AC+Q F G+ G F L+ +S + IL F++QFY Sbjct: 248 NVQNDSDQDVIAMANLDQEACVQVFFIRNGKVSGRENFMLEGVKDSDRSTILGSFIKQFY 307 Query: 295 TDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 + P +++ EE + ++E + G V I VPK+G+KR ++ NA Sbjct: 308 MSQEYIPRELIVEEEFLDMEIMEEILESKRGASVNIRVPKRGDKRALVLMVRKNADEYLV 367 Query: 354 QKLSTEISHQMI----LKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 + + L++ K L +RIE YD S+I G ++G MVV Sbjct: 368 KFDDLKKKKYEKSLGSLEELAKILGLDAKNLQRIEAYDISNIQGVDSIGTMVVYTNGVKD 427 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 K +YR+F + V+ DD A M VL+RR + PD+++ Sbjct: 428 KKEYRRFKIKT--VEGPDDYASMAEVLDRRLKH-------------------GNLPDLIL 466 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 LDGGKGQ+SA + V++ I + + K K + + + L+ + Sbjct: 467 LDGGKGQVSAVKKVMEDNG--ENIPLWGMYKDDKHRTKG---LLNGDKTVELDRTTSLYR 521 Query: 529 FIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 F+ +++E H ++I+ HR R KK S LD+I GIGP RKR+L+ F + I R++ E Sbjct: 522 FVAGIQEEVHNYSISYHRSLRDKKMTKSILDDIPGIGPKRKRVLMDRFKDIDNIKRANKE 581 Query: 588 TLASIEGISKKIACKIYNHFHK 609 L +I+GI++++A I + ++ Sbjct: 582 DLVAIDGITERLAEDILRYINR 603 >gi|83816797|ref|YP_445701.1| excinuclease ABC, C subunit [Salinibacter ruber DSM 13855] gi|119367832|sp|Q2S280|UVRC_SALRD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|83758191|gb|ABC46304.1| excinuclease ABC, C subunit [Salinibacter ruber DSM 13855] Length = 633 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 179/637 (28%), Positives = 303/637 (47%), Gaps = 45/637 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRF 60 + +P PGVY+ LD VLYVGKA NL+ R+++Y + RI M+ + ++ Sbjct: 15 KLDALPTDPGVYKFLDDEESVLYVGKAKNLRNRVRTYFQQSRQRDGRIEVMVQKAVDVDI 74 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT TE EAL+LE N IK L+PR+N+ LRDDK++PYI I + P ++K R Sbjct: 75 IVTDTEAEALILENNQIKELQPRYNVNLRDDKTYPYICI-KNERFPRVFKTRTVKQDGSE 133 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175 YFGP+A V + +++++ F LR+C+ + + + CL I C PC G+ Sbjct: 134 YFGPYADVSKMNSMMDAIRSVFQLRTCSLDLTEEKIEAGKYDVCLQHHIDNCKAPCVGKQ 193 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 S YME + + KK L+G L + + M + + ++E A RD++ AL Sbjct: 194 SEADYMETIEQVKKLLNGQTQELMDLLKDEMQRQSDAHNFEEAARLRDQVKALKDYSQQQ 253 Query: 236 DS---IYNRMDCFSLY--HNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290 + D F+L+ ++++ C G+ G FL++ E ++A+++ + Sbjct: 254 KVVSQDFADRDVFALHVERDEDIGCGVLFQVREGKMIGKRHKFLRSVEERSDAELILSLV 313 Query: 291 RQFYTDKPC-PENILLSEEAEETSLLEISFFKQYGYKVKITV-----PKQGEKRKIIEQA 344 +Y + PE +LLS + + + ++ + + P++GEK ++ A Sbjct: 314 ENYYAEANFYPEEVLLSHDPNDHPAQDTHALEELLRQEQGHQVPIKVPQRGEKASLVRMA 373 Query: 345 LINAHRSHTQKLSTEISHQM-----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCM 399 NA + + ++ + +K + + P+R++ D SH G V Sbjct: 374 TSNAKLQVGEWKTQQMKRERNRIPESIKALGEALNMEAPPRRVDGIDVSHHGGKETVASC 433 Query: 400 VVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS 459 VV + K+ YR + + + T DD E + ++ Sbjct: 434 VVFTDATPRKSDYRTYKIRSTEEGTPDDY--------------KAMREVVRRRYRRMVEE 479 Query: 460 FPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALV 519 WPD+V++DGGKGQLS+A +LK++ +R +I +AK + E + + + Sbjct: 480 DGPWPDLVVIDGGKGQLSSAVEMLKEVGAFDRFPVIGLAKRLE-----EVYRPGDSDPVF 534 Query: 520 LNMRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTV 578 L P L +Q++RDEAHRFA+T RKRR KK S L +I+GIGP + LL FG+ Sbjct: 535 LAKDSPALQLLQKVRDEAHRFAVTYQRKRRKKKTLQSELLDIHGIGPKTAKKLLGEFGSA 594 Query: 579 KMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615 + + E LA + G A I +++ + + P Sbjct: 595 AKVKEADEEALAEVVG--PAKAETITDYYDETEAPAP 629 >gi|255038775|ref|YP_003089396.1| excinuclease ABC, C subunit [Dyadobacter fermentans DSM 18053] gi|254951531|gb|ACT96231.1| excinuclease ABC, C subunit [Dyadobacter fermentans DSM 18053] Length = 603 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 176/621 (28%), Positives = 307/621 (49%), Gaps = 53/621 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVT 63 ++P PGVY+ D G V+YVGKA +L+ R+ SY NN H + ++SQI I +T+ Sbjct: 12 KIPLDPGVYRYFDETGEVIYVGKAKSLRNRVSSYFSKNNQHDRKTRRLVSQIRRIEYTIV 71 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E +ALLLE +IK+L+P+FNILL+DDK++P+I +T P ++ R+ +G+++G Sbjct: 72 LSEWDALLLENQLIKQLQPKFNILLKDDKTYPFICVT-DEPFPRVFPTRNMDRTKGTFYG 130 Query: 124 PFASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 PFA++ ++ ++ + R+ L ++ + + CL + I C GPC G + Sbjct: 131 PFANLRSMHTLLDMFKALYQIRSCQLPLNKSNIEAGKFKVCLEYHIGNCKGPCEGFQGQD 190 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 +Y + + L G + ++ M +A + +E A + ++ LS+ Q+ Sbjct: 191 EYNAEIEQVHNILKGNLSSPQQYFKEKMLEAAEQMAFEKAHAWKTKIEHLSNFQSKATVI 250 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 +D ++ + A + G T T +K + ++ +IL+ + + + Sbjct: 251 NPRIGNIDVLTIVSDDEAAYLNFMKIKQGYMVATQTLEVKKKLDESDLEILAMMIVEMRS 310 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 L+S + + ++ +TVP+ G+K+K+++ ++ N ++ Sbjct: 311 TYGSEARELVSNLKPDLDM-----------RLDVTVPQIGDKKKLLDMSMKNVMYFRRER 359 Query: 356 LST--------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 +L + +P+ IE +DNS+I G + V MV + Sbjct: 360 TERREVEASATTSKKDRVLIRLKADLQIKTLPRHIECFDNSNIQGTNPVASMVCFKDGKP 419 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 K YR FN+ V +D A M ++ RR+ +LI E+ L PD++ Sbjct: 420 SKKDYRHFNIKT--VIGPNDFASMNEIVSRRYLRLIAEEQPL--------------PDLI 463 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPIL 527 ++DGGKGQL AA LK L + ++ II IAK + E +F + L ++ R L Sbjct: 464 VVDGGKGQLGAACDALKSLGIYGQVPIIGIAKRLE-----EIYFPEDPLPLYIDKRSESL 518 Query: 528 YFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586 IQ++RDEAHRFAIT HR +R K + S L+ + G+G + LL+ FG+V+ I SS Sbjct: 519 KLIQQIRDEAHRFAITFHRDKRSKASLVSELEGVVGVGKVTATKLLKHFGSVRAIRESSL 578 Query: 587 ETLASIEGISKKIACKIYNHF 607 ETL + G+ + A K+ +F Sbjct: 579 ETLTDLVGLDR--AKKVRAYF 597 >gi|198274091|ref|ZP_03206623.1| hypothetical protein BACPLE_00228 [Bacteroides plebeius DSM 17135] gi|198273169|gb|EDY97438.1| hypothetical protein BACPLE_00228 [Bacteroides plebeius DSM 17135] Length = 610 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 176/622 (28%), Positives = 317/622 (50%), Gaps = 48/622 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PG+YQ L+ G ++YVGKA NL++R+ SY ++ + + ++S+I +IR+ V Sbjct: 20 NLPEGPGIYQYLNKEGVIIYVGKAKNLKRRVYSYFSKDHQSAKTRMLVSKIADIRYIVVN 79 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E +ALLLE N+IK+ KPR+N+LL+DDK++P I I++ P +YK R +YFGP Sbjct: 80 SEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICISN-EYFPRIYKTRKIIRDGSNYFGP 138 Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ V ++ + +++ + LR+C +++ + + + CL + IK C GPC G+ S E+ Sbjct: 139 YSHVPSMMALLELIKKLYPLRTCHLALTPENIAQGKFKVCLEYHIKNCKGPCIGKQSHEE 198 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237 YM+ + +A++ L G + + M + +E A +++ + + ++ Sbjct: 199 YMQQIAQARELLKGNTQKVSNALMEEMKCLAEEMKFEEAQKLKEQYMLIESYRAKSEVVS 258 Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + + +D FS+ ++N A I G TF K + ++L + + Sbjct: 259 SVLHHIDVFSIETDENTAYINYLHITNGCINQAFTFEYKVRMNESKEELLQLGIVEMRER 318 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 K + I++ E + V T+PK+GEK+ +++ +L+N + + Sbjct: 319 YKSTSKEIIVPFELDMEM-----------NGVTFTIPKKGEKKHLLDLSLMNVKQYKVDR 367 Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 L E ++K+ + L +P IE +DNS+I G AV VV + K Sbjct: 368 LKQAEKLNPEQRSVRLMKEIQAQLQLEKMPNHIECFDNSNIQGSDAVAACVVFKKAKPSK 427 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 YRK+ + V DD A M+ V+ RR+S++++ + L PD+++ Sbjct: 428 KDYRKYLIKT--VVGPDDYASMQEVVRRRYSRILEEQGEL--------------PDLILT 471 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ+ + V++ + +I I+ +AK + E F + L + P+ + Sbjct: 472 DGGKGQMEVVRQVIED-ELHLQIPIVGLAKNNRHRTS-EVLFGFPPQTLGIKQGTPLFHL 529 Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 ++ ++DE HRFAIT HR++R K+ S LD I GIG RK LL+ F +V I ++S E Sbjct: 530 LENIQDEVHRFAITFHREKRSKSQIASALDNIKGIGDKRKTALLKKFKSVARIRQASLEE 589 Query: 589 LASIEGISKKIACKIYNHFHKN 610 +A + I + A + ++ Sbjct: 590 IAEV--IGESAAKSVKESLSES 609 >gi|55821309|ref|YP_139751.1| excinuclease ABC subunit C [Streptococcus thermophilus LMG 18311] gi|81560416|sp|Q5M3R7|UVRC_STRT2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|55737294|gb|AAV60936.1| excinuclease ABC subunit C [Streptococcus thermophilus LMG 18311] Length = 595 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 171/618 (27%), Positives = 297/618 (48%), Gaps = 39/618 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPNNPGCYLHKDKFGNIIYVGKAKNLKNRVRSYFRGSHDT-KTELLVSEIADFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+I+ P+FNI L+D KS+P+I IT K P L R G Y Sbjct: 67 VTESNIEALLLEINLIQENMPKFNIRLKDGKSYPFIKIT-KELYPRLLITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ A + L R F + C + + C + I +C + + Sbjct: 126 FGPYPDAGAANEIKKLLDRIFPFKKCKNP----ANKVCFYYHIGQCKAHTICHTTEAYWQ 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---I 238 V + K FL+G + + ++ M + + ++E A +RD + A+S ++ Sbjct: 182 GLVEDVKNFLNGHDDKIVNQLKAKMKDMSDQMEFERAAEYRDLIEAVSTLRTKQRVIRQD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ +++ + + Sbjct: 242 MQDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDAEEDFLTYIGQFYLDSRHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ I + + ++ S+ + + VK+ P++GEK++++ A+ NA + Sbjct: 302 KPKEIFIPGDIDQESVEALVGNE-----VKVFKPQRGEKKQLVNLAMKNARVSLTQKFDL 356 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 Q +++ K +P RIE +DNS+IMG S V MVV K +YRK Sbjct: 357 LEKDIAKTQGAIENLGKLMGIPTPV-RIESFDNSNIMGTSPVSAMVVFENGKPNKKEYRK 415 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V+ DD A MR V+ RR+S++ ++ + PD++I+DGG+G Sbjct: 416 YKIKT--VEGPDDYASMREVIRRRYSRVKRDG--------------LTPPDLIIMDGGQG 459 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ VL+ + I + + K K E F + L + + + R++ Sbjct: 460 QVNVAKDVLRN-ELNLSIPVAGLQKNDKHQT-NELLFGDPLRVIDLPRQSEEFFLLHRIQ 517 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD + G+GP RK+ LL++F ++ I ++S E + ++ Sbjct: 518 DEVHRFAITFHRQVRSKNSFSSKLDGVEGLGPKRKQKLLKNFKSMTAIQQASVEDIQAL- 576 Query: 594 GISKKIACKIYNHFHKNT 611 GI +K+A + + +++ Sbjct: 577 GIPEKVAQALLDKLSQDS 594 >gi|22537378|ref|NP_688229.1| excinuclease ABC subunit C [Streptococcus agalactiae 2603V/R] gi|81454002|sp|Q8DZ90|UVRC_STRA5 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|22534251|gb|AAN00102.1|AE014247_17 excinuclease ABC, C subunit [Streptococcus agalactiae 2603V/R] Length = 593 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 172/615 (27%), Positives = 293/615 (47%), Gaps = 41/615 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D G ++YVGKA NL+ R+KSY H +++T + ++S+I + + Sbjct: 8 KLELLPDSPGCYLHKDKNGTIIYVGKAKNLKNRVKSYFHGSHNT-KTELLVSEIEDFEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + EALLLE N+I+ P++NI L+DDKS+PYI IT+ + P L R G+Y Sbjct: 67 VTTSNTEALLLEINLIQENMPKYNIRLKDDKSYPYIKITN-ERYPRLMITRQVKKSDGTY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ A + L R F + C + + C + + +C+ + + + Sbjct: 126 FGPYPDSGAATEIKRLLDRLFPFKKCTNP----ANKVCFYYHLGQCNAHTVCQTNKAYWD 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + K+FL+G ++ + + M A + ++E A +RD + A+S ++ I+ Sbjct: 182 SLREDVKQFLNGKDNKIVNGLTEKMKSAAMTMEFERAAEYRDLIEAISLLRTKQRVIHQD 241 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 M D F + +K C+Q F G+ +E + T Sbjct: 242 MKDRDVFGYFVDKGWMCVQVFFVRNGKLIQRDVNMFPYYNEPEEDFLTYIGQFYQDTKHF 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ + + ++ + S+ I KI P++GEK++++ A+ NA + Sbjct: 302 LPKEVFIPQDIDAKSVETIV-------GCKIVKPQRGEKKQLVNLAIKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +++ +P RIE +DNS+I G S V MVV K YRK Sbjct: 355 LEKDIRKTHGAIENLGNLLNIPKPV-RIEAFDNSNIQGTSPVAAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + V DD A MR V+ RR+S+++K+ + PD++++DGG+G Sbjct: 414 FKIKT--VIGPDDYASMREVIHRRYSRVLKDG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+ + I I + K K E F E + L + + R++ Sbjct: 458 QVNIARDVI-ENQFGLAIPIAGLQKNDKHQT-HELLFGDPLEVVELPRNSEEFFLLHRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD I G+GP RK+LL++ F ++ I ++ E + Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSKLDGITGLGPKRKQLLMKHFKSLPNIQKAEIEDIIM-C 574 Query: 594 GISKKIACKIYNHFH 608 GI + +A + + + Sbjct: 575 GIPRTVAESLRDSLN 589 >gi|157964710|ref|YP_001499534.1| excinuclease ABC subunit C [Rickettsia massiliae MTU5] gi|157844486|gb|ABV84987.1| Excinuclease ABC subunit C [Rickettsia massiliae MTU5] Length = 629 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 234/632 (37%), Positives = 349/632 (55%), Gaps = 40/632 (6%) Query: 1 MSSEQM--PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNI 58 + S+ + PE GVY+M D+ +V+YVGKA NL+KR+ +Y ++ ++ MI+ + Sbjct: 13 IKSKLIDAPERSGVYRMFDVNKQVIYVGKAKNLKKRLTNY-IKSDLDNKTLRMIANTCFV 71 Query: 59 RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118 +++T +EVEALLLEA +IK+ +P+FNILL+D KSFP+I + H P L K+R + Sbjct: 72 EYSITNSEVEALLLEAQLIKKFQPKFNILLKDYKSFPFIKLRLDHDFPQLLKYRGKTLSD 131 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 G +FGPFAS V T+ LQ+ F LRSC D+ F RTRPCL ++IKRC PC G+I+ E Sbjct: 132 GKFFGPFASSAEVNTTLTELQKIFKLRSCTDNYFNSRTRPCLQYEIKRCYAPCVGKINKE 191 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y + V + K FL G L+E ++R M + + + +E A RDR+ ALS++Q Sbjct: 192 VYRDLVTQVKDFLQGRTKELQENLSRKMEELSSQMRFEEAAEIRDRIKALSYVQLKAGVS 251 Query: 239 --YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 D ++ C++ + GQ G +F + ST ++L YFL QFY Sbjct: 252 DVVKDADIIAIVEKNGHYCVEVFLYRAGQACGNIPYFPTSTENSTKEEVLEYFLLQFYQK 311 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 + P I+++ E + ++E ++ ITVP +G K K+++ A NA S Q L Sbjct: 312 QHVPAEIIINHEINDKEVIEAIKKINNILQLNITVPNKGGKAKLVQNAETNALFSLEQYL 371 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 +Q I+ + + F L IP+RIEIYDNSHI G AVG MVV G+ GF K +YR FN Sbjct: 372 KKFAKNQEIMFEIKELFGLSEIPERIEIYDNSHIQGKFAVGVMVVAGKVGFDKKEYRVFN 431 Query: 417 LHPNDV------------------KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEY 458 ++ + DD M+R VL RR ++L + Sbjct: 432 VNAPSLVCHSRESGNDGIKNCGGDIKGDDYEMLRQVLTRRLARLRQE------------- 478 Query: 459 SFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEAL 518 P ++I+DGGKG L + V+ KL E I + ++KG R+AG+E+F V E Sbjct: 479 -PHKLPSLMIIDGGKGHLGVVKEVMDKL--EMNIPFVCMSKGVDRNAGLEQFHVIGKEVF 535 Query: 519 VLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGT 577 L+ P++ ++Q LRDEAH FAI HR R +A S LD+I G+G RK+ LL FG+ Sbjct: 536 TLDKNLPVMKYLQILRDEAHNFAIKNHRLGRSRAIKISSLDDIEGVGATRKKALLHYFGS 595 Query: 578 VKMISRSSPETLASIEGISKKIACKIYNHFHK 609 K + ++ + LA + GI+K +A I+N H+ Sbjct: 596 YKAVCDATIDELAKVNGINKSLAEMIFNVLHR 627 >gi|313676650|ref|YP_004054646.1| excinuclease ABC, c subunit [Marivirga tractuosa DSM 4126] gi|312943348|gb|ADR22538.1| excinuclease ABC, C subunit [Marivirga tractuosa DSM 4126] Length = 602 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 187/623 (30%), Positives = 309/623 (49%), Gaps = 48/623 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVT 63 +P+ PGVY+ + +G ++YVGKA NL+ R+ SY + + NH + ++ +I I + Sbjct: 14 DLPQLPGVYKFHNSSGVIIYVGKAKNLKNRVTSYFNKSANHNRKTIRLVREIEKIEIAIV 73 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E +ALLLE ++IK L+P++NILL+DDKSFPY+ IT+ P + R G+YFG Sbjct: 74 NSEFDALLLENSLIKELQPKYNILLKDDKSFPYLCITN-EPFPRIISTRRRIARNGTYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 P+ASV A+ + +++ + +R+C ++ + + CL + I C GPC G Sbjct: 133 PYASVRAMNNVLELIRKLYTIRTCKLNLSDQNIKAGKFKVCLEYHIGNCKGPCEGLQKHA 192 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235 +Y + +A + L G + K+ NM +A + ++E A ++++L L + + Sbjct: 193 EYQNDIDQAAEILKGNLNIPKQHFKENMQKAAEQLNFEKAQSYKEKLELLEKFHSKSLVV 252 Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 ++ +D S+ A + G T T LK + T+ ++L L + Sbjct: 253 NAKLTDIDVCSIISEDKYAFVNYMRIKNGSINVTKTIELKKKLDETDQELLLLALIELRK 312 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRS 351 E+ +L P+ G+K+K++E +L NA Sbjct: 313 ----------IYESNTNEILTNIDITNPPETFHFIKPQIGDKKKLVEMSLKNALFFKKEK 362 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 Q S++I +LK L +P +IE +DNS++ G + MV K++ Sbjct: 363 LNQNESSKIKELRVLKQLQSDLRLKELPIKIECFDNSNMQGTNPTASMVHFKNGRPKKSE 422 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YR +++ V DD A M ++ RR+ +L++ ++ L P+++++DG Sbjct: 423 YRHYHVKT--VIGPDDFASMTEIVGRRYKRLVEEQQEL--------------PNLIVIDG 466 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GKGQLSAA L KLN+ I II IAK + E +F + + ++ + L +Q Sbjct: 467 GKGQLSAAVKALNKLNLYGNIPIIGIAKRLE-----EIYFPEDPYPVHISKKSESLKLLQ 521 Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 RLRDEAHRFAIT HR+ R K ++ S L+ I GIG LL F +VK I +S E L+ Sbjct: 522 RLRDEAHRFAITFHRQIRSKNSFTSELEGIEGIGEKTIDQLLAHFKSVKKIKEASFEKLS 581 Query: 591 SIEGISKKIACKIYNHFHKNTSH 613 +I G SK A +I F + Sbjct: 582 TIIGNSK--AEQIIKAFKQKKED 602 >gi|323127427|gb|ADX24724.1| excinuclease ABC subunit C [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 594 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 175/613 (28%), Positives = 285/613 (46%), Gaps = 39/613 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPDSPGCYLHKDKEGTIIYVGKAKNLKNRVRSYFRGSHDT-KTELLVSEIADFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + EALLLE N+I+ P++NI L+DDKS+P+I IT+ P L R G Y Sbjct: 67 VTESNTEALLLEINLIQENMPKYNIKLKDDKSYPFIKITN-ETFPRLLITRQIKKNDGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + L R F + C + V + C + + +C + Sbjct: 126 FGPYPDSYTANEVKKLLDRIFPFKKCKNPV----NKVCFYYHLGQCCAHTICHTDKAYWD 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 V + K FL+G + + + + M A+ + +E A +RD ++ ++ ++ + Sbjct: 182 GLVEDVKHFLNGKDDKIIDGLRAKMLAASEEMAFERAAEYRDLISGIAIMRTKQRVMSKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F + +K C+Q F G+ +E+ + Sbjct: 242 LQDRDIFGYFVDKGWMCVQVFFVRQGKLIQRDVNLFPYYNEAEEDFLTYMGQFYQDKQHF 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH---RSHTQK 355 P+ + + E +E + I K P++GEK++++ A NA + Sbjct: 302 IPKEVFIPEAIDEELVAAIVPTKIIK-------PQRGEKKQLVALATKNARVSLQQKFDL 354 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L +I D P RIE +DNS+I G S V MVV + K YRKF Sbjct: 355 LEKDIKKTSGAIDNLGYLLGIDKPVRIEAFDNSNIQGTSPVAAMVVFVDGKPSKKDYRKF 414 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 + V DD A MR V+ RR+S++ PD++I+DGG GQ Sbjct: 415 KIKT--VAGPDDYASMREVIFRRYSRVKHEG--------------LVAPDLIIIDGGIGQ 458 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 ++AA+ V++ + I I + K K E F K E + L + + R++D Sbjct: 459 VNAAREVIED-RLGLTIPIAGLQKNDKHQT-HELLFGKPLEVVPLPRNSEEFFLLHRIQD 516 Query: 536 EAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E HRFAIT HR+ R K ++S LD+I G+GP RK++LL+ F T+ I+ +SP+ + S+ G Sbjct: 517 EVHRFAITFHRQVRSKNSFSSKLDKIPGLGPKRKQILLKHFKTMTAIAAASPDEIHSL-G 575 Query: 595 ISKKIACKIYNHF 607 I + +A ++ H Sbjct: 576 IPRAVASAVHQHL 588 >gi|326575078|gb|EGE25006.1| excinuclease ABC subunit C [Moraxella catarrhalis CO72] Length = 616 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 207/617 (33%), Positives = 313/617 (50%), Gaps = 32/617 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PG+Y+ML +G +LYVGKA +L+ R+ SY + ++ +I I + Sbjct: 22 ANTLPNRPGIYKMLGKSGEILYVGKAKSLKNRVGSYFAKTIEHPKTQALVQRIEQIEIII 81 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSY 121 T E EALLLE N+IK +P +N+LLRDDKS+ YI I+ K P L R QG + Sbjct: 82 TRGETEALLLEQNLIKNHRPPYNVLLRDDKSYLYIYIST-DKFPRLSIGRGKGRYTQGRF 140 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ S ++++ +QR F +RSC +S F R RPCL +QIKRC PC G +S+E+Y Sbjct: 141 FGPYPSARNAKESVQLMQRLFMIRSCTNSFFAQRQRPCLEYQIKRCKAPCVGMVSAEQYQ 200 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--Y 239 V A FL G +H ++ + + M +A ++E A +RDRLA +S +Q Sbjct: 201 SDVRAALAFLQGHSHEVQAILVKKMEEAAAALNFEQAAFYRDRLAMISDLQAKQAVFRLQ 260 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT--DSESTNAQILSYFLRQFYTD- 296 D F++ + + GQ G +F + +N + L FL FY Sbjct: 261 GEADVFAIAADAGAVAVCVLTVRGGQVLGVKNYFPDDIEPAIKSNQERLKEFLLSFYFQV 320 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P+ I+ S EE S+L Q+G + I + + A +NA+ + + K Sbjct: 321 SDDLPDEIISSVAIEEASILADILQVQFGKRTTIKHKVTTHRDDWLSIANLNANNALSAK 380 Query: 356 LSTEISHQMILKDFTK--KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 L Q + + RIE +D SH MG +A+G VV +NG K YR Sbjct: 381 LKDSRELQARFEQLKQVLAPITTCTIDRIECFDISHTMGEAAIGSCVVFDQNGPKKRDYR 440 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++ +H + DD A MR VL RR+++ PD++++DGGK Sbjct: 441 QYAIHD--ITAGDDYAAMRQVLMRRYTK-------------------HPLPDLLLIDGGK 479 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 GQL+ A VL +L ++ +AKG R AG+E E + L L+ I ++ Sbjct: 480 GQLNVAIEVLSELGKLTDTLLVGVAKGEGRKAGLEVLHFVTHEPIDLPADSKALHLIMQI 539 Query: 534 RDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDEAHRFAIT HRK+R KK + S L+ I G+G +R+R LL FG ++ + +S + +A + Sbjct: 540 RDEAHRFAITAHRKKRDKKRSSSVLEVIPGLGQVRRRDLLNHFGGIQQLLGASQDEIAQV 599 Query: 593 EGISKKIACKIYNHFHK 609 +GI +A IY H+ Sbjct: 600 KGIGPMLAGTIYKALHE 616 >gi|284045984|ref|YP_003396324.1| excinuclease ABC, C subunit [Conexibacter woesei DSM 14684] gi|283950205|gb|ADB52949.1| excinuclease ABC, C subunit [Conexibacter woesei DSM 14684] Length = 647 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 202/615 (32%), Positives = 300/615 (48%), Gaps = 19/615 (3%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PGVY + V+YVGKA +++KR+ S+ SN T ++ I+ I V T Sbjct: 38 LPDQPGVYLFRNAKSTVIYVGKAKSIKKRVASHF-SNPSTQMGRDLLPMIDRIESLVVST 96 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALL E N IK+ KPRFNI LRDDKS+PYI I+ P +Y R+ + +YFGP+ Sbjct: 97 EAEALLAEQNFIKQYKPRFNIRLRDDKSYPYIGISLDEDFPRVYFTRERHRRERAYFGPY 156 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTR-PCLLFQIKRCSGPCTGEISSEKYMEFV 184 ++ V +T++ L + F RSC R+ PCL + IKRC PC ++ E Y + Sbjct: 157 SNAKRVRETLDLLGKIFLFRSCDGPTPGRRSGSPCLDYYIKRCEAPCVDYVTKEHYRTSI 216 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NR 241 FLSG ++ I NM A ++ +E A R+RL ++ + Sbjct: 217 DGVIDFLSGRYRAIEAAIEANMKDAAAEQRFEDAARERNRLRSIRSLLERQRVTNASGGT 276 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK-PCP 300 +D ++ N A Q G F+L + + FL Q+Y P Sbjct: 277 LDAIAIAVEGNDANAQVFQIRDGVLSDRQGFYLDNQAGDDLPAVAEAFLLQYYGSSLMIP 336 Query: 301 ENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 +++ E E + + ++ G V++ ++G+KR+I+E A NA + Q+ Sbjct: 337 PLLVVQREVGEAAQTIAAALAERRGGPVELRAAERGDKRRILELAERNARLALDQERLRS 396 Query: 360 ISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 + L+ L IP R+E +D SH+ G V MVV K YR+F Sbjct: 397 ERRRQQRVDALEGLQAALGLDAIPLRLECFDISHVGGTHTVASMVVFEAGAPKKADYRRF 456 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 L DD A M VL RR +Q + + F + SF S P+VV++DGGKGQ Sbjct: 457 TLREGVEGVPDDFASMEEVLSRRLAQYERQHDRSPFDD-GYDASFASLPNVVVIDGGKGQ 515 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 LSA VL +TI+S+AK + E F + +VL P L +QR+RD Sbjct: 516 LSAGMRVLDGFR-RRGVTIVSLAKRIE-----EVFVPGREAPIVLPHDTPELQLLQRIRD 569 Query: 536 EAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFAI HR RR + S LD + G+GP RKR LL+ FG+ + ++ E L ++ G Sbjct: 570 EAHRFAIGHHRIRRDRAMTTSVLDSLPGVGPARKRALLKHFGSPEAFLAATREELEAVPG 629 Query: 595 ISKKIACKIYNHFHK 609 + K+A +Y +K Sbjct: 630 LPGKVARDLYVQINK 644 >gi|313888507|ref|ZP_07822174.1| excinuclease ABC, C subunit [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845536|gb|EFR32930.1| excinuclease ABC, C subunit [Peptoniphilus harei ACS-146-V-Sch2b] Length = 620 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 199/620 (32%), Positives = 324/620 (52%), Gaps = 27/620 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFT 61 +++P+ PGVY M + ++YVGKA +L+KR++ Y S + ++ M+S+I++ + Sbjct: 8 LDKLPDKPGVYIMKNELDEIIYVGKAKSLRKRVRQYFGSYGKSSKKVASMVSKIHDFEYI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 + EVE+L+LE+N+IK P++NILLRDDK +PYI + + P + K R + Y Sbjct: 68 IVENEVESLVLESNLIKDNLPKYNILLRDDKQYPYIKVKVNERFPRVMKTRRVAKDGAKY 127 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCA---DSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 FGP+ V AV +I + +R + LR+C ++V RPCL + I +C GPCTGE+ E Sbjct: 128 FGPYPDVFAVNGSIETFERIYPLRTCNLNLENVEEKPFRPCLNYYIGKCLGPCTGEVKDE 187 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y V E FLS N L +K+ M + DYE+A RDR+ L +++ Sbjct: 188 DYNLMVDEVLSFLSSSNSKLVDKLHEKMMDYSRNLDYENAADIRDRIKNLEYLKERQLIS 247 Query: 239 ----YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D +L + IQ FF G+ G + ++ + +I S F++QFY Sbjct: 248 DPEANDDKDIIALAKGIDEVLIQIFFFRNGKIIGREHYMIRDYYNDSYEEIFSSFIKQFY 307 Query: 295 TDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----H 349 P+ +++ E+ + LLE ++ G KV I VP +G K++++ NA Sbjct: 308 IGASYIPKELIIEEKPLDIKLLEDWLTEKRGNKVNIVVPIKGNKKELVRMVKRNALDMIE 367 Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 + + +++ L+D L P+RIE YD S+I G +VG MVV + K Sbjct: 368 KYGDKFKKRAETNKKALEDIRDLLGLNETPRRIEAYDISNISGVESVGSMVVFEDGDSKK 427 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 + YRKF + V DD + ++ V+ERRF++ ++ + SF ++PD++++ Sbjct: 428 SDYRKFRIKS--VVGPDDYSSLKEVIERRFTRGVEE------KKTSKSSSFSNFPDLIMM 479 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ++AA+ +L KLN+ + I + K + E +++ Sbjct: 480 DGGKGQVNAAKEILDKLNL--NLEICGLVKDDFHKTRG---IIYNNEEFKIDLNSRAYKM 534 Query: 530 IQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 I ++++EAHRFAI HR R K S LD+I IGP RK LL+ F ++ I +S E Sbjct: 535 IYKIQEEAHRFAINYHRNLRTKTMFKSELDDIKLIGPKRKENLLKHFRSIDKIKNASLEE 594 Query: 589 LASIEGISKKIACKIYNHFH 608 L +E +++ A IY HF Sbjct: 595 LMEVESMNEASANSIYQHFR 614 >gi|116628039|ref|YP_820658.1| excinuclease ABC subunit C [Streptococcus thermophilus LMD-9] gi|122267365|sp|Q03K10|UVRC_STRTD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|116101316|gb|ABJ66462.1| Excinuclease ABC subunit C [Streptococcus thermophilus LMD-9] gi|312278636|gb|ADQ63293.1| Excinuclease ABC subunit C [Streptococcus thermophilus ND03] Length = 595 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 173/618 (27%), Positives = 297/618 (48%), Gaps = 39/618 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPSNPGCYLHKDKFGNIIYVGKAKNLKNRVRSYFRGSHDT-KTELLVSEIADFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+I+ P+FNI L+D KS+P+I IT K P L R G Y Sbjct: 67 VTESNIEALLLEINLIQENMPKFNIRLKDGKSYPFIKIT-KELYPRLLITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ A + L R F + C + + C + I +C+ + + + Sbjct: 126 FGPYPDSGAANEIKKLLDRIFPFKKCKNP----ANKVCFYYHIGQCNAHTICHTTEDYWQ 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---I 238 V + K FL+G + + ++ M + + +E A +RD + A+S ++ Sbjct: 182 GLVEDVKNFLNGHDDKIVNQLKAKMKDMSDQMAFERAAEYRDLIEAVSTLRTKQRVIRQD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ +++ + + Sbjct: 242 MQDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDAEEDFLTYMGQFYLDSRHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ I + + ++ S+ + + VK+ PK+GEK++++ A NA + Sbjct: 302 KPKEIFIPGDIDQESVEALVGDE-----VKVFKPKRGEKKQLVNLATKNARVSLTQKFDL 356 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 Q +++ K +P RIE +DNS+IMG S V MVV K +YRK Sbjct: 357 LEKDIAKTQGAIENLGKLMGIPTPV-RIESFDNSNIMGTSPVSAMVVFENGKPNKKEYRK 415 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V+ DD A MR V+ RR+S++ ++ + PD++I+DGG+G Sbjct: 416 YKIKT--VEGPDDYASMREVIRRRYSRVKRDG--------------LTPPDLIIMDGGQG 459 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ VL+ + I + + K K E F + L + + + R++ Sbjct: 460 QVNVAKDVLRN-ELNLSIPVAGLQKNDKHQT-NELLFGDPLRVIDLPRQSEEFFLLHRIQ 517 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K ++S LD + G+GP RK+ LL++F ++ I ++S E + ++ Sbjct: 518 DEVHRFAITFHRQVRSKNSFSSKLDGVEGLGPKRKQKLLKNFKSMTAIQQASVEDIQAL- 576 Query: 594 GISKKIACKIYNHFHKNT 611 GI KK+A + + +++ Sbjct: 577 GIPKKVAQALLDKLSQDS 594 >gi|205374376|ref|ZP_03227174.1| excinuclease ABC subunit C [Bacillus coahuilensis m4-4] Length = 572 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 178/587 (30%), Positives = 296/587 (50%), Gaps = 42/587 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY + H + ++ +I N + VT + Sbjct: 12 LPDQPGCYLMKDRQGTIIYVGKAKILKNRVRSYFTGS-HDGKTQRLVGEIENFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 ++EAL+LE N+IK+ P++N++L+DDK++P+I +T + P L R +G YFGP+ Sbjct: 71 DLEALILELNLIKKHDPKYNVMLKDDKTYPFIKLT-AERHPRLITTRKVKKDKGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A +T L R + LR C R CL + + +C PC E+ ++ Y E Sbjct: 130 PNVGAANETKKLLDRLYPLRKCNTLP----DRVCLYYHMGQCLAPCVKEVPNDTYKEMKE 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRM 242 E +FL+GG ++K+++ M +A K ++E A +RD++ + + Sbjct: 186 EITRFLNGGYKDIKKELQVKMEEAAEKLEFERAKEYRDQIQHIEATMEKQKMTQTDFTDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F K C+Q F G+ +E + + ++ P+ Sbjct: 246 DVFGYAVEKGWMCVQVFFVRQGKLIERDVSMFPIYNEPSEEFLTFLGTFYTKSNHFKPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 I L E E + ++ K P++G+K+++++ A NA + Sbjct: 306 IYLPEHVEMDLVEQLLEVKT-------FQPQRGQKKQLVDLATKNAKIALGEKFALIERD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ K + + P RIE +DNS+I G V +VV + K +YRK+ + Sbjct: 359 EDRTIKAVENLGKAMNI-YTPFRIESFDNSNIQGADPVSALVVFIDGKPAKKEYRKYKIK 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 VK DD MR V+ RR+++++K PD++I+DGGKGQ+ A Sbjct: 418 T--VKGPDDYESMREVVRRRYTRVLKEN--------------LPLPDLIIIDGGKGQIEA 461 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ +++ +L ++ I I +AK K + E + E + L R Y +QR++DE Sbjct: 462 AREIIEDELGLD--IPIAGLAKDDKHNTA-ELLYGNPLETVPLGRRSQEFYLLQRIQDEV 518 Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISR 583 HRFAIT HR+ R K A+ S LD+I GIGP RK+ LL+ FG++K I R Sbjct: 519 HRFAITFHRQVRGKTAFQSVLDDIAGIGPKRKKQLLKHFGSLKKIER 565 >gi|326563910|gb|EGE14161.1| excinuclease ABC subunit C [Moraxella catarrhalis 46P47B1] gi|326566581|gb|EGE16727.1| excinuclease ABC subunit C [Moraxella catarrhalis 12P80B1] Length = 616 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 207/617 (33%), Positives = 313/617 (50%), Gaps = 32/617 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PG+Y+ML +G +LYVGKA +L+ R+ SY + ++ +I I + Sbjct: 22 ANTLPNRPGIYKMLGKSGEILYVGKAKSLKNRVGSYFAKTIEHPKTQALVQRIEQIEIII 81 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSY 121 T E EALLLE N+IK +P +N+LLRDDKS+ YI I+ K P L R QG + Sbjct: 82 TRGETEALLLEQNLIKNHRPPYNVLLRDDKSYLYIYIST-DKFPRLSIGRGKGRYTQGRF 140 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ S ++++ +QR F +RSC +S F R RPCL +QIKRC PC G +S+E+Y Sbjct: 141 FGPYPSARNAKESVQLMQRLFMIRSCTNSFFAQRQRPCLEYQIKRCKAPCVGMVSAEQYQ 200 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--Y 239 V A FL G +H ++ + + M +A ++E A +RDRLA +S +Q Sbjct: 201 SDVRAALAFLQGHSHEVQAILVKKMEEAAAALNFEQAAFYRDRLAMISDLQAKQAVFRLQ 260 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT--DSESTNAQILSYFLRQFYTD- 296 D F++ + + GQ G +F + +N + L FL FY Sbjct: 261 GEADVFAIAADAGAVAVCVLTVRGGQVLGVKNYFPDDIEPAIKSNQERLKEFLLSFYFQV 320 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P+ I+ S EE S+L Q+G + I + + A +NA+ + + K Sbjct: 321 SDDLPDEIISSVAIEEASILADILQVQFGKRTTIKHKVTTHRDDWLSIANLNANNALSAK 380 Query: 356 LSTEISHQMILKDFTK--KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 L Q + + RIE +D SH MG +A+G VV +NG K YR Sbjct: 381 LKDSRELQARFEQLKQVLAPITTCTIDRIECFDISHTMGEAAIGSCVVFDQNGPKKRDYR 440 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++ +H + DD A MR VL RR+++ PD++++DGGK Sbjct: 441 QYAIHD--ITAGDDYAAMRQVLMRRYTK-------------------HPLPDLLLIDGGK 479 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 GQL+ A VL +L ++ +AKG R AG+E E + L L+ I ++ Sbjct: 480 GQLNVAIEVLSELGKLTDTLLVGVAKGEGRKAGLEVLHFVAHEPIDLPADSKALHLIMQI 539 Query: 534 RDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDEAHRFAIT HRK+R KK + S L+ I G+G +R+R LL FG ++ + +S + +A + Sbjct: 540 RDEAHRFAITAHRKKRDKKRSSSVLEVIPGLGQVRRRDLLNHFGGIQQLLGASQDEIAQV 599 Query: 593 EGISKKIACKIYNHFHK 609 +GI +A IY H+ Sbjct: 600 KGIGPMLAGTIYKALHE 616 >gi|116625695|ref|YP_827851.1| excinuclease ABC subunit C [Candidatus Solibacter usitatus Ellin6076] gi|122939314|sp|Q01S04|UVRC_SOLUE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|116228857|gb|ABJ87566.1| Excinuclease ABC subunit C [Candidatus Solibacter usitatus Ellin6076] Length = 623 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 192/611 (31%), Positives = 304/611 (49%), Gaps = 32/611 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFTVT 63 Q+P PGVY D G+V+YVGKA +L+ R++SY + + +I++ +I + + Sbjct: 9 QLPFSPGVYLYKDSGGKVIYVGKAKSLRNRVRSYFSEDKLGDIKTGTLITEACDIDYILV 68 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 E EAL LE N+IK+ KPRFNILLRDDK++PY+ +T+ K P +Y R YFG Sbjct: 69 DNEKEALALENNLIKQYKPRFNILLRDDKTYPYVKVTN-EKYPRVYVTRRLRKDGAQYFG 127 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYME 182 PF + + ++ + R F + SC + R +PCL F I RC GPC + E Y Sbjct: 128 PFFPANLAHRLVHFIHRHFQVPSCKVDLTRFHPKPCLQFHIHRCLGPCVQGLTTDEAYAA 187 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--- 239 V + + FL G + +L + M A+L+ +E A RD + + I+ Sbjct: 188 AVRDVRLFLDGRHSDLARGLRARMEAASLEMRFEEAAGLRDLITTVEEIEERQKMAAAKG 247 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP- 298 + +D F++Y L + GQ F + E + LS L+Q Y D+ Sbjct: 248 DDVDIFAVYAEPPLVALNIFHLRNGQIVDRRELFWEDQFEYDESLFLSSLLKQIYLDQQF 307 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P I + E E+ LE ++ +V+I P++G+K+ ++ NA S + Sbjct: 308 VPAEIHVPVEFEDLEALEELLTEKRQRRVEIRTPQRGQKKALLGLVETNAKHSFDARFRV 367 Query: 359 EISHQMILKD-FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 +++ LP P RIE +D SHI G V MVV + K+ YRKF + Sbjct: 368 LKPSSRAIQEALQDALNLPDAPSRIECFDISHIQGTDKVASMVVWEDGKMKKSDYRKFII 427 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 V DD A MR V+ RR+S+L + ++ P +V++DGG GQL Sbjct: 428 RT--VVGNDDFASMREVVTRRYSRLQEEKQ--------------PMPGLVLIDGGLGQLH 471 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 AA L+ + + ++ + SIAK + F ++ E +VL+ PIL+ +Q +RDEA Sbjct: 472 AAAEALEAIGIADQ-PLASIAKREEIIY----VFGQEDEPVVLDRFSPILHLVQSIRDEA 526 Query: 538 HRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFA+T HR R + S LD I G+G + LL+ FG+++ + ++ LA++ G Sbjct: 527 HRFAVTFHRSLRNTRQLTSELDAIRGVGAKTVQKLLKEFGSLERVRAATETQLATVVG-- 584 Query: 597 KKIACKIYNHF 607 + A ++ H+ Sbjct: 585 RAAAKRVIAHY 595 >gi|296112590|ref|YP_003626528.1| excinuclease ABC subunit C [Moraxella catarrhalis RH4] gi|295920284|gb|ADG60635.1| excinuclease ABC subunit C [Moraxella catarrhalis RH4] gi|326576836|gb|EGE26743.1| excinuclease ABC subunit C [Moraxella catarrhalis 101P30B1] gi|326577710|gb|EGE27586.1| excinuclease ABC subunit C [Moraxella catarrhalis O35E] Length = 616 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 207/614 (33%), Positives = 312/614 (50%), Gaps = 32/614 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG+Y+ML +G +LYVGKA +L+ R+ SY + ++ +I I +T Sbjct: 25 LPNRPGIYKMLGKSGEILYVGKAKSLKNRVGSYFAKTIEHPKTQALVQRIEQIEIIITRG 84 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSYFGP 124 E EALLLE N+IK +P +N+LLRDDKS+ YI I+ K P L R QG +FGP Sbjct: 85 ETEALLLEQNLIKNHRPPYNVLLRDDKSYLYIYIST-DKFPRLSIGRGKGRYTQGRFFGP 143 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + S ++++ +QR F +RSC +S F R RPCL +QIKRC PC G +S+E+Y V Sbjct: 144 YPSARNAKESVQLMQRLFMIRSCTNSFFAQRQRPCLEYQIKRCKAPCVGMVSAEQYQSDV 203 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRM 242 A FL G +H ++ + + M +A ++E A +RDRLA +S +Q Sbjct: 204 RAALAFLQGHSHEVQAILVKKMEEAAAALNFEQAAFYRDRLAMISDLQAKQAVFRLQGEA 263 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT--DSESTNAQILSYFLRQFYTD--KP 298 D F++ + + GQ G +F + +N + L FL FY Sbjct: 264 DVFAIAADAGAVAVCVLTVRGGQVLGVKNYFPDDIEPAIKSNQERLKEFLLSFYFQVSDD 323 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P+ I+ S EE S+L Q+G + I + + A +NA+ + + KL Sbjct: 324 LPDEIISSVAIEEASILADILQVQFGKRTTIKHKVTTHRDDWLSIANLNANNALSAKLKD 383 Query: 359 EISHQMILKDFTK--KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 Q + + RIE +D SH MG +A+G VV +NG K YR++ Sbjct: 384 SRELQARFEQLKQVLAPITTCTIDRIECFDISHTMGEAAIGSCVVFDQNGPKKRDYRQYA 443 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 +H + DD A MR VL RR+++ PD++++DGGKGQL Sbjct: 444 IHD--ITAGDDYAAMRQVLMRRYTK-------------------HPLPDLLLIDGGKGQL 482 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 + A VL +L ++ +AKG R AG+E E + L L+ I ++RDE Sbjct: 483 NVAIEVLSELGKLTDTLLVGVAKGEGRKAGLEVLHFVTHEPIDLPADSKALHLIMQIRDE 542 Query: 537 AHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 AHRFAIT HRK+R KK + S L+ I G+G +R+R LL FG ++ + +S + +A ++GI Sbjct: 543 AHRFAITAHRKKRDKKRSSSVLEVIPGLGQVRRRDLLNHFGGIQQLLGASQDEIAQVKGI 602 Query: 596 SKKIACKIYNHFHK 609 +A IY H+ Sbjct: 603 GPMLAGTIYKALHE 616 >gi|258446078|ref|ZP_05694240.1| excinuclease ABC subunit C [Staphylococcus aureus A6300] gi|257855136|gb|EEV78077.1| excinuclease ABC subunit C [Staphylococcus aureus A6300] Length = 593 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 180/613 (29%), Positives = 284/613 (46%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D +V+YVGKA L+ R++SY H + T ++ +I F VT + Sbjct: 15 VPMEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVGEIRRFEFIVTSS 73 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L R G YFGP+ Sbjct: 74 ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLLVTRTVKQGTGKYFGPY 132 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + ++T L R + R + + CL + I +C GPC ++ KY + Sbjct: 133 PNAYSAQETKKLLDRIYPYRK----CDKMPDKLCLYYHIGQCLGPCVYDVDLSKYAQMTK 188 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 E FL+G + + + + M A+ D+E A +RD + + ++ N + Sbjct: 189 EITDFLNGEDKTILKSLEERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIR 248 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K CIQ F G T + P+ Sbjct: 249 DVFGYCVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEFYTFIGQFYSLNQHILPKE 308 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358 + + ++ + + K I P +G K+ +++ A NA S K Sbjct: 309 VHVPRNLDKEMIQSVVDTK-------IVQPARGPKKDMVDLAAHNAKVSLNNKFELISRD 361 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ + + P RIE +DNS+I G V MV + K YRK+ + Sbjct: 362 ESRTIKAIEELGTQMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPDKKNYRKYKIK 420 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 VK DD MR V+ RR+S+++ PD++I+DGGKG ++ Sbjct: 421 T--VKGPDDYKSMREVVRRRYSRVLNEG--------------LPLPDLIIVDGGKGHMNG 464 Query: 479 AQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 V +L ++ I + + K K E + E + L Y + R++DE Sbjct: 465 VIDVLQNELGLD--IPVAGLQKNDKHQTS-ELLYGANAEIVPLKKNSQAFYLLHRIQDEV 521 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R+K S LD+I+GIG RK LLL+SFG++K + ++ E +I GI Sbjct: 522 HRFAITFHRQTRQKTGLKSILDDIDGIGNKRKTLLLRSFGSIKKMKEATLEDFKNI-GIP 580 Query: 597 KKIACKIYNHFHK 609 + +A ++ HK Sbjct: 581 ENVAKNLHEQLHK 593 >gi|148242296|ref|YP_001227453.1| excinuclease ABC subunit C [Synechococcus sp. RCC307] gi|147850606|emb|CAK28100.1| Nuclease subunit of the excinuclease complex (Excinuclease ABC subunit C) [Synechococcus sp. RCC307] Length = 650 Score = 473 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 191/628 (30%), Positives = 301/628 (47%), Gaps = 29/628 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFTVT 63 +P PG Y M D R+LY+GK+ L+ R++SY N + RI M+ Q+ +I F VT Sbjct: 23 NLPVEPGCYLMRDRDDRILYIGKSKKLRSRVRSYFRGGNPISPRIRLMVRQVVDIEFIVT 82 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ--GSY 121 +E EAL LE+N+IK +P FN+LL+DDK +PY+ IT P ++ R + Sbjct: 83 DSEAEALALESNLIKNHQPHFNVLLKDDKKYPYLCITWSEDYPRIFITRRRRFRSPLDRF 142 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GP+ V + +T++ ++R F LR + + RT CL + I RC G C +IS Y Sbjct: 143 YGPYVDVGLLRRTLSVVKRVFPLRQRPQPLHKDRT--CLNYDIGRCPGVCQEKISPADYQ 200 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + + + G N L+ + + M + + + D+E+A RD+L L + Sbjct: 201 QILRKVSMVFQGRNEELQNLLQQQMVRYSERLDFEAAARVRDQLQGLELLTADQKVALPD 260 Query: 242 ----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D +L + +A +Q G+ G F ++ IL L + Y+ Sbjct: 261 ASVSRDVIALAADDRVAAVQLFQVRAGKLVGRLGFTADAEAAE-PGAILQRVLEEHYSQL 319 Query: 298 PC---PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P +LL E LLE + G KV + VP++ +K +IE NA + Sbjct: 320 DPVELPAEVLLQHPLPEQELLEAWLRDRRGRKVILQVPQRQQKADLIEMVERNAGFELAR 379 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 Q+ +D + L H P+RIE YD SHI G AV VV + K YRK Sbjct: 380 AQRGAEQQQLSTEDLAQLLELEHPPRRIEGYDISHIQGSDAVASQVVFIDGLPAKQHYRK 439 Query: 415 FNLHPNDVKTQD--DCAMMRMVLERRFSQLIKN--------EENLNFHPKKQEYSFPSWP 464 + + + +++ D M ++ RRF + + E Q F WP Sbjct: 440 YKIRSSSIRSGHSDDFMAMAEIMRRRFRRWSQAKATGANLSELRQRRGSALQTDGFTDWP 499 Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524 DVV++DGGKGQLSA L++L++ + + + S+AK + E F + L Sbjct: 500 DVVMIDGGKGQLSAVMEALRELDLADELVVCSLAKQRE-----EVFRPGASQPLESEADQ 554 Query: 525 PILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583 + ++RLRDEAHRFA++ HR++R + S L +I G+GP R + LL F ++ I Sbjct: 555 LGVQLLRRLRDEAHRFAVSFHRQQRGERMKRSRLSDIPGLGPKRVKDLLAHFRSIDAIQL 614 Query: 584 SSPETLASIEGISKKIACKIYNHFHKNT 611 +S ET+A G+ +A +I+ FH Sbjct: 615 ASAETIAECPGVGPALALQIHQFFHPQA 642 >gi|269977212|ref|ZP_06184185.1| excinuclease ABC subunit C [Mobiluncus mulieris 28-1] gi|269934515|gb|EEZ91076.1| excinuclease ABC subunit C [Mobiluncus mulieris 28-1] Length = 702 Score = 473 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 190/696 (27%), Positives = 309/696 (44%), Gaps = 94/696 (13%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 ++P PGVY+ D GRV+YVGKA NL+ R+ SY R M++ ++ + Sbjct: 8 KPAEIPTAPGVYRWRDAHGRVIYVGKAKNLRNRLTSYFVDPAKLHPRTAKMVATAESVSW 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V +EVEAL LE IK P+FN++ +DDKS+PY +T + P + R + Sbjct: 68 VVVGSEVEALTLEYTWIKEYDPKFNVMFKDDKSYPYFAVTLNQEFPRMGVLRSAHQRGVR 127 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP---CLLFQIKRCSGPCTGEISS 177 YFGP+ +V A+ +T + L+ F +R+C D VF CL I RCS PC G IS+ Sbjct: 128 YFGPYTAVWAIRQTSDLLETVFPVRTCTDGVFARARAAGRACLKGYIGRCSAPCIGRISA 187 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 ++ E + F+SG L + M + +E A RD+L AL + N Sbjct: 188 AEHRELANRVCDFMSGHEAGLLRDLENQMWAESKAFRFEEAAKKRDQLEALRKVLEKNAV 247 Query: 238 IYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + + D F+L ++ +Q + G+ RG + + + ++++S+ L Q Y Sbjct: 248 VMDTDTDADLFALAADELQVSVQVFYVRAGRIRGQRGWISTIEEDVDTSELMSFALEQIY 307 Query: 295 TDKP---------------------------CPENILLSEEAEETSLLEISFFKQYGYKV 327 P+ IL+S + + LE G KV Sbjct: 308 GQVAAKLAQSGGAQLREPSSATDVAHFDTTYIPKQILVSVIPADPASLEAWLSGLRGSKV 367 Query: 328 KITVPKQGEKRKIIEQALINA----HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIE 383 I P++G KR+ +E+ +NA T++ S + L + + + R+E Sbjct: 368 TIRRPQRGMKREAVERVELNAVDGLRLYKTRRASDLTQRNLALNELGRALGIDPPL-RVE 426 Query: 384 IYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDC-AMMRMVLERRFSQL 442 YD SH G VG MVV + KN YRKF + + + D M VL RRF +L Sbjct: 427 CYDISHTQGTFQVGSMVVFEDGAPRKNAYRKFTVRGSQGQGAADDTEAMNEVLRRRFERL 486 Query: 443 IKNEENLNFHPK-----------------------------------------------K 455 I+ E + + Sbjct: 487 IQEETPAPHEVEPAVTDRGDPAARYVGESSVAGDVGDAASRGANPNPGEGLSGDPSGEIR 546 Query: 456 QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG 515 + F PD+V++DG Q+ AA+ + + V + I ++ +AK + E + V Sbjct: 547 EPKRFSYRPDLVVVDGALPQVHAARAAMDAVGVWD-IPVVGLAKRLE-----EVWTVDSD 600 Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQS 574 ++ LY +Q LRDE+HRFAIT HRK+R + S LD I G+G ++++ LL+ Sbjct: 601 FPVIFPRTSTALYLLQYLRDESHRFAITAHRKKRGQAMTRSVLDGIPGLGSVKQKALLKH 660 Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 FG+++ I R+S E ++ + G + +A ++ + +N Sbjct: 661 FGSLRQIRRASAEDISKVPGFGRILATQVVKYLQEN 696 >gi|217967867|ref|YP_002353373.1| excinuclease ABC, C subunit [Dictyoglomus turgidum DSM 6724] gi|217336966|gb|ACK42759.1| excinuclease ABC, C subunit [Dictyoglomus turgidum DSM 6724] Length = 598 Score = 473 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 187/615 (30%), Positives = 315/615 (51%), Gaps = 33/615 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E PE GVY D +G+V+YVGKA NL+KR+ SY + + + +++ + NI F Sbjct: 12 KVENFPESTGVYIFYDHSGKVIYVGKAKNLRKRVLSYFSDS--SPKSAYILKKAQNIEFY 69 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 +T TE EAL+LE+ +IK+ +P NI LRDDK +P + +T + P L R Y Sbjct: 70 ITDTETEALILESVLIKKHRPIMNIQLRDDKQYPLLKLTLYEEYPRLILARRFEDDGAKY 129 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEKY 180 +GP+ V +TI+ +++ F LRSC ++ + + RPCL + I+ C PC G I+ E Y Sbjct: 130 YGPYTQSGTVRETISMVKKLFNLRSCNWNLPKSKPKRPCLNYFIENCKAPCQGYITKEDY 189 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 E V E F+ G + K+ M + + ++E A RD++ L ++ + Sbjct: 190 QEIVREVIDFMEGRYEEIINKLYNEMQKYSKNLEFEKAAKVRDKIRLLQNLSEKQKILTF 249 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D Y + A + G+ F L E + ++L F+ Q+Y+ + Sbjct: 250 NRENKDLIQFYVEDHKAKVLVYLIREGKLVEKRIFNLTLPEEYSRDELLESFILQYYSVR 309 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 PE I+L + F + + E E+ L A + T + Sbjct: 310 DIPEIIVLPFLVFGGEVDLKEFLCRRKGTKVEIRTPESEDE---EKLLNMALKDLTIESL 366 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + L + + F LP++P IE YD S++ G AVG V KN+YR++ + Sbjct: 367 RSEKVWLALSELQRIFNLPNLPVAIEGYDISNLQGREAVGARVYFQNGYPDKNRYRRYKI 426 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + ++ +D M++ V++RR +++ ++ PD++++DGGKGQL+ Sbjct: 427 KYTE-ESPNDYLMLQEVIKRRLNKIEED----------------PLPDIMLIDGGKGQLN 469 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A V ++L ++ + I+++AK + E F ++++L P L+ +Q++RDEA Sbjct: 470 AVLEVFEELKIKPKF-ILALAKERE-----EIFVPGNSDSILLPYDSPALHLLQQVRDEA 523 Query: 538 HRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFA++ HRK R KK S L++I GIG R ++LL++F ++ + ++S E L I GIS Sbjct: 524 HRFAVSYHRKLRSKKLIDSHLEKIPGIGEKRMKILLEAFNDLESLKKASLEDLKKIPGIS 583 Query: 597 KKIACKIYNHFHKNT 611 +KIA KIY +FHK++ Sbjct: 584 EKIAEKIYLYFHKSS 598 >gi|78186373|ref|YP_374416.1| excinuclease ABC subunit C [Chlorobium luteolum DSM 273] gi|119367681|sp|Q3B5K8|UVRC_PELLD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|78166275|gb|ABB23373.1| Excinuclease ABC subunit C [Chlorobium luteolum DSM 273] Length = 628 Score = 473 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 181/639 (28%), Positives = 298/639 (46%), Gaps = 62/639 (9%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFTVT 63 +P PG+YQ + AG+V+YVGKA N++ R++SY T + ++ I ++ +T Sbjct: 18 SLPTGPGIYQFKNSAGKVIYVGKAKNIRSRVRSYFRDPRQLTGKTQVLVGHITDLEIIIT 77 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +EVEAL+LE N+IK LKPR+N+ L+DDK++P+++IT P ++ R+ + + ++FG Sbjct: 78 SSEVEALILENNLIKELKPRYNVNLKDDKTYPWLVIT-GEPFPRVFISRNRTRDKSTWFG 136 Query: 124 PFASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 P+ + + + F +RSC +++ + + CL + I +C GPC G + Sbjct: 137 PYTEAGQLRSILELIGSIFPVRSCRYSLTPENIAAKKHKLCLDYHIGKCKGPCEGLQNEA 196 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y+E + E + L G L +++ M A + +E A + +L +L + + Sbjct: 197 EYLEMIGEIVRLLKGRTAGLLKELHEKMLTAAAELRFEEAAELKMQLQSLRRYADRQKMV 256 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D ++ + AC G+ G F L + ++L L +Y Sbjct: 257 AADGMDRDVSAIASGDDEACGVVFRIREGKMLGARHFILTNTAGEPEKKLLGKVLEGYYL 316 Query: 296 DKP--CPENILLSEEAEETSLLE--------ISFFKQYGYKVKITVPKQGEKRKIIEQAL 345 P PE +LLS + + VK TVP+ GEK ++E Sbjct: 317 KSPEAMPEEVLLSAQLDLEDTESLQALSREREEECPTRRKAVKFTVPQIGEKAHLVEMCR 376 Query: 346 INAHRSHTQKLSTEISHQMILKD------FTKKFALPHIPKRIEIYDNSHIMGCSAVGCM 399 NA + L + ++ + L PKRIE +DNSH+ G V M Sbjct: 377 QNARHHLAEYLVQKQKRGEAAREHYGVKALGESLHLETPPKRIECFDNSHLQGTDYVSSM 436 Query: 400 VVVGENGFVKNQYRKFNLHP----NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK 455 V +K+ YRKF L + DD A M VL RR+ +++E Sbjct: 437 VCFVNGKPLKSAYRKFRLQSLEEACGTGSSDDYAAMEQVLGRRYGGSLQDE--------- 487 Query: 456 QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG 515 PD++++DGGKGQ ++A+ VL +L + + +I +AK + E F Sbjct: 488 -----LPLPDLIVVDGGKGQANSAKKVLDRLGIT--VPVIGLAKRLE-----EVFTPDAD 535 Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQS 574 L P L +Q+LRDEAHRFAIT HR R K+ + L I G+G LL+ Sbjct: 536 GPFNLPKTSPALKLLQQLRDEAHRFAITYHRNIRSKRTLETGLTTIPGVGEKIAFALLER 595 Query: 575 FGTVKMISRSSPETLA----SIEGISKKIACKIYNHFHK 609 FG+V ++ +S E L+ ++G+S I+ H+H Sbjct: 596 FGSVDGVAAASAEELSQFAGKVKGMS------IFRHYHP 628 >gi|163815353|ref|ZP_02206728.1| hypothetical protein COPEUT_01517 [Coprococcus eutactus ATCC 27759] gi|158449327|gb|EDP26322.1| hypothetical protein COPEUT_01517 [Coprococcus eutactus ATCC 27759] Length = 638 Score = 473 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 186/624 (29%), Positives = 310/624 (49%), Gaps = 37/624 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M D ++YVGKA +L R+ Y + + +I M+S I + Sbjct: 30 ELKKLPHVPGVYLMHDSGDHIIYVGKAIDLYNRVHQYFQAGYKKSPKIQKMVSHIAWFEY 89 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V +E+EAL+LE N+IK +P +N +L DDK +PYI IT + P + Sbjct: 90 IVCGSELEALVLECNLIKEHRPHYNTMLTDDKGYPYIRITVEEDFPRILYSHQMKRDHSK 149 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT--RPCLLFQIKRCSGPCTGEISSE 178 YFGP+ + AV+ I L++ + +RSC+ ++ + RPCL QIK+C PC G IS E Sbjct: 150 YFGPYTNSRAVKDIIELLKKLYHIRSCSRNLPKDIGLERPCLYHQIKQCDAPCQGYISKE 209 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235 Y + +A FL+G + ++ + + + M + + ++E A RD + ++ HI+ Sbjct: 210 DYNNNIQQAISFLNGNHGHVVKDLEKRMRELADEMEFEQASEIRDLIKSIQHIETTQRVG 269 Query: 236 DSIYNRMDCFSLYHN-KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 D+ + D ++ + N I F G+ G + + + + I+ FL+Q+Y Sbjct: 270 DTSSDDRDVIAMATDLGNECVISIFFVRSGKMIGREHYHMSGVNAEKYSTIMESFLKQYY 329 Query: 295 TDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 P P+ I++ ++ ++ +L+E + G +V I +P++G+K+K+++ A NA Sbjct: 330 ASTPYLPKEIIIEQQIDDYALIEEYLSARCGSQVHIVIPQKGDKQKLLKLAKDNAFLVMN 389 Query: 354 QK----LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 Q + + K+ + +P R+E +D SHI G +V MVV K Sbjct: 390 QDADKLKREKERTEGAAKELAQLIGVPSAK-RLEAFDISHISGYHSVASMVVFENGRAKK 448 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 N YRKF L + DD A MR VL RRF+ + F +PD++++ Sbjct: 449 NDYRKFKLRT--IDGPDDYASMREVLTRRFT----------------DEKFNIYPDILMM 490 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGG+GQ++ A VL L + I + + K + + Sbjct: 491 DGGRGQVNIALEVLGDLGL--NIPVCGMVKDDHHRTRG---LYYNNKEIEFPAGTQAFNM 545 Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 I RL+DEAHRFAI HR R KA +S LD+I+GIGP R++ LL F + I +++ Sbjct: 546 ITRLQDEAHRFAIEYHRSLRSKAQIHSVLDDIDGIGPARRKALLAYFKDIDNIKKAAIAD 605 Query: 589 LASIEGISKKIACKIYNHFHKNTS 612 L G+++ A +YN FH +++ Sbjct: 606 LEIPAGMTRASAEAVYNFFHADST 629 >gi|325299505|ref|YP_004259422.1| UvrABC system protein C [Bacteroides salanitronis DSM 18170] gi|324319058|gb|ADY36949.1| UvrABC system protein C [Bacteroides salanitronis DSM 18170] Length = 602 Score = 473 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 176/619 (28%), Positives = 315/619 (50%), Gaps = 48/619 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PG+YQ L+ G ++YVGKA NL++R+ SY ++H+ + ++S+I +IR+ V Sbjct: 16 NLPTSPGIYQYLNAEGTIIYVGKAKNLKRRVYSYFSKDHHSAKTRILVSRIADIRYIVVN 75 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE N+IK+ KPR+N+LL+DDKS+P I +++ P ++K R +YFGP Sbjct: 76 TEEDALLLENNLIKKYKPRYNVLLKDDKSYPSICVSN-EYFPRVFKTRKIVRDGSTYFGP 134 Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 + +++ ++ +++ + LR+C +++ + R CL + IK C GPC G S E+ Sbjct: 135 YTHFPSMQAMLDLIKKLYPLRTCHLALTPENIQAGKFRVCLEYHIKNCKGPCIGAQSHEE 194 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237 YM + K+ L G + + + + M + + +E A + +++ + + ++ ++ Sbjct: 195 YMANIASIKELLKGNTQKVSQGMMQEMMRLADEMRFEEAQLIKEKYELIENYRSKSEVVS 254 Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + + +D FS+ ++ A I G TF K E T ++L + + Sbjct: 255 SVLHNIDVFSIEDDEQSAYINYLHITNGCINQAFTFEYKKRLEETKEELLEMGIVEMRER 314 Query: 297 KPC-PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + I++ E + V T+P++G+K+ ++E +++N + + Sbjct: 315 YKSQSKEIIVPFELDLEME-----------DVTFTIPQRGDKKHLLELSILNVKQYKVDR 363 Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 L E +LK+ ++ + IP IE +DNS+I G AV VV + K Sbjct: 364 LKQAEKLNPEQRSVRLLKEIQEQLHMEKIPLHIECFDNSNIQGADAVAACVVFKKGRPSK 423 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 YRK+ + V DD A M+ V+ RR++++++ + L PD+++ Sbjct: 424 QDYRKYIIKT--VVGPDDYASMQEVVRRRYTRILEEQGEL--------------PDLILT 467 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ+ + V++ + I I +AK K E F + L P+ + Sbjct: 468 DGGKGQMEVVRQVIED-ELSLHIPIAGLAKDNKHRTS-EILFGFPPRNIGLKQGTPLFHL 525 Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 ++ +++E HRFAIT HR +R K+ S LD I G+G +RK LL+ F +V I ++S E Sbjct: 526 LENIQNEVHRFAITFHRDKRSKSQIASALDGIKGVGKMRKEALLKHFKSVARIKKASLEE 585 Query: 589 LASIEGISKKIACKIYNHF 607 LA + G+S +A I Sbjct: 586 LAEVVGMS--VAQTIKETL 602 >gi|167764034|ref|ZP_02436161.1| hypothetical protein BACSTE_02417 [Bacteroides stercoris ATCC 43183] gi|167698150|gb|EDS14729.1| hypothetical protein BACSTE_02417 [Bacteroides stercoris ATCC 43183] Length = 606 Score = 473 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 177/620 (28%), Positives = 312/620 (50%), Gaps = 49/620 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PG+YQ L+ G ++YVGKA NL++R+ SY + + + ++S+I +IR+ V Sbjct: 16 NLPESPGIYQYLNAEGTIIYVGKAKNLKRRVSSYFNREHEPGKTRVLVSKIADIRYIVVN 75 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + + P ++K R SY+GP Sbjct: 76 TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRVFKTRRIIRNGSSYYGP 134 Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + ++ ++ ++ + LR+C +++ + CL + IK C+GPC G+ + E+ Sbjct: 135 YSHIPSMYAVLDLIKHLYPLRTCNLNLSPENIRAGKFNVCLEYHIKNCAGPCIGKQNQEE 194 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y++ + E K+ L G ++ + + M + + +E A +++ L + ++ ++ + Sbjct: 195 YLKNIAEIKEILKGNTQEIERMLYQQMQELAAEMKFEEAQKIKEKYLLLENYRSKSEVVS 254 Query: 240 NRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 N + ++ + A I G TF K T ++LS + + Sbjct: 255 NVLHNIDVFSIEEDTDEKSAFINYLHITNGAINQAFTFEYKKRLNETKEELLSLGIIEMR 314 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 ++ + L V T+P++G+K+K++E +++N + Sbjct: 315 ERYKSLSREIIVPFELDMEL----------KDVIFTIPQRGDKKKLLELSILNVKQYKAD 364 Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 +L E +LK+ ++ L +P RIE +DNS+I G V VV + Sbjct: 365 RLKQAEKLNPEQRTVRLLKEIQQELHLDRLPMRIECFDNSNIQGSDPVAGCVVFIKGKPS 424 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 K YRK+N+ V+ DD M+ V++RR+ + I+ PD++I Sbjct: 425 KKDYRKYNIKT--VEGPDDYTSMKEVVKRRYQRAIEEN--------------APLPDLLI 468 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 DGGKGQ+SA + V+ +LN++ I I +AK K E + + + L P+ Sbjct: 469 TDGGKGQMSAVKEVVDELNLD--IPIAGLAKDGKHRTS-ELLYGFPPQTIGLKQNSPLFR 525 Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 + +++DE HRFAIT HR +R K S LDEI GIG K LL+ F +VK I +S E Sbjct: 526 LLTQIQDEVHRFAITFHRDKRSKRQIASALDEIKGIGEKTKNALLKEFKSVKRIKEASAE 585 Query: 588 TLASIEGISKKIACKIYNHF 607 + + I + A I ++F Sbjct: 586 DIVKV--IGEAKAKIIKDYF 603 >gi|302023667|ref|ZP_07248878.1| excinuclease ABC subunit C [Streptococcus suis 05HAS68] Length = 582 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 172/605 (28%), Positives = 297/605 (49%), Gaps = 42/605 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y + G+++YVGKA NL+ R++SY + T + ++++I + F Sbjct: 8 KLELLPDSPGCYLHKNKYGKIIYVGKAKNLRNRVRSYFRGAHDT-KTEALVAEIADFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+I+ KPR+NI+L+DDKS+P+I IT K + P L R G Y Sbjct: 67 VTDSNIEALLLEINLIQENKPRYNIMLKDDKSYPFIKIT-KERHPRLIITRQIKKDGGQY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A +T+ L+R + R C ++ CL + +++C S Y Sbjct: 126 FGPYPDVGAANQTLKLLERLYPFRKCKLPENKY----CLYYHLRQCLAHGDNMPSLSDYD 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + V E +FL+G + + +++ M A ++E A +RD L ++S ++ + + Sbjct: 182 KMVKEVAQFLTGHDDKIIKEVQDKMKAAAGNLEFEKAAEYRDVLQSISTLRTKQRVMAHD 241 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ +++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERNVNLFPYYNDADEDFLTYIGQFYRDQQHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ ++ ++ + K P++GEK+++I A NA + Sbjct: 302 IPSEVLIPQDIDQEAVEALVDTKVIK-------PQRGEKKQLINLATKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +++ + +P RIE +DNS+IMG S V MVV K +YRK Sbjct: 355 LEKNLEKTYGAVENIGQLLGIPTPV-RIEAFDNSNIMGTSPVSAMVVFENGVPNKKEYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + N V+ DD A MR VL+RR+S++++++ + PD++I+DGG+G Sbjct: 414 Y--KINTVEGPDDYASMREVLQRRYSRVLRDD--------------LTPPDLIIIDGGQG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L + + R++ Sbjct: 458 QVNVAKQVIEQ-ELGMSIPIAGLQKNDKHQT-HELLFGNPLEVVELPRNSQEFFLLHRIQ 515 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS-- 591 DE HRFAI HR+ R K ++S LD I G+GP RK+ L++ F ++ I +S + +A Sbjct: 516 DEVHRFAIEFHRQVRSKNSFSSKLDGIEGLGPKRKQALMKHFKSIGNIQSASLQEIAEAG 575 Query: 592 IEGIS 596 + I Sbjct: 576 VPYIG 580 >gi|171463200|ref|YP_001797313.1| excinuclease ABC, C subunit [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192738|gb|ACB43699.1| excinuclease ABC, C subunit [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 618 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 208/634 (32%), Positives = 320/634 (50%), Gaps = 52/634 (8%) Query: 10 PGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEA 69 PGVY+ D AG +LY GKA NL+KR+ SY + RI M+ +I + TVT TE EA Sbjct: 2 PGVYRFFDEAGHILYAGKARNLKKRVSSYFQRTQLSPRIELMVGKIAHYETTVTRTETEA 61 Query: 70 LLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVD 129 L+LE N+IK L P FNIL RDDKS+PY+++T H+ P L +R + YFGPF + Sbjct: 62 LILENNLIKELAPPFNILFRDDKSYPYVMLT-GHQFPRLASYRGKVDKRNHYFGPFPNSW 120 Query: 130 AVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKK 189 AV ++ LQ+ F LR+C DSVF++R+RPCLL QI RCS PC G ++ E+Y + V +A + Sbjct: 121 AVRNSVQILQKVFRLRTCEDSVFKNRSRPCLLHQIHRCSAPCVGRLNVEQYGQDVAQATR 180 Query: 190 FLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-----NRMDC 244 FL G + + ++ + M++ + ++E A + RDR+A LS + +D Sbjct: 181 FLEGDHSQVLSELEKEMHKHSEAIEFEMAAVLRDRIADLSSVLQQQSMDVVAKGEGDVDI 240 Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST-----NAQILSYFLRQFYTDKP- 298 ++ + + C+ G++ G +F K ++ +IL F+ Q Y ++ Sbjct: 241 IAVAQMEGMVCVNLAMVRGGRHLGDRAYFPKGLRTTSGELPFPPEILEAFITQHYLEENS 300 Query: 299 -------CPENILLSEEA------------EETSLLEISFFKQYGYKVKITVPKQGEKRK 339 P ++L+ L Q G K+ QG+KR Sbjct: 301 NETTSNLIPPVLVLNHALQSARDDLAQLNESPPEDLHELLNAQAGRKITFLHQPQGQKRH 360 Query: 340 IIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALP---HIPKRIEIYDNSHIMGCSAV 396 + A NA + T++L + +L RIE +D SH G + Sbjct: 361 WLAMAEGNAKIALTKRLVETGGQLARARTLADILSLELESLEQLRIECFDISHTSGEATQ 420 Query: 397 GCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQ 456 VV ++ ++YR+FN++ + DD A MR VL R ++ + Sbjct: 421 ASCVVYAKDAMQSSEYRRFNIND--ITPGDDYAAMRQVLHRCYANFQE------------ 466 Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG- 515 P V+++DGG+GQ+ A+ VL + ++ + I+ +AK R G+E G Sbjct: 467 -LPLEKIPQVILIDGGQGQVEMARQVLSEFGMDIGL-IVGVAKSEGRKVGLETLIFADGR 524 Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQS 574 E + L + L I ++RDEAHRFAIT R +R KA S L+EI GIG R++ LL Sbjct: 525 EPMELGIDSAALLLIAQIRDEAHRFAITGMRAKRAKARTISRLEEIEGIGAKRRQKLLAR 584 Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 FG +K ++ +S E LAS+EG+S +A +IY H Sbjct: 585 FGGLKGVANASIEELASVEGVSLTLAEQIYRQLH 618 >gi|258449809|ref|ZP_05697907.1| excinuclease ABC subunit C [Staphylococcus aureus A6224] gi|257856729|gb|EEV79632.1| excinuclease ABC subunit C [Staphylococcus aureus A6224] Length = 593 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 180/613 (29%), Positives = 283/613 (46%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D +V+YVGKA L+ R++SY H + T ++ +I F VT + Sbjct: 15 VPMEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVGEIRRFEFIVTSS 73 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L R G YFGP+ Sbjct: 74 ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLLVTRTVKQGTGKYFGPY 132 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + ++T L R + R + + CL + I +C GPC ++ KY + Sbjct: 133 PNAYSAQETKKLLDRIYPYRK----CDKMPDKLCLYYHIGQCLGPCVYDVDLSKYAQMTK 188 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 E FL+G + + + + M A+ D+E A +RD + + ++ N + Sbjct: 189 EITDFLNGEDKTILKSLEERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIR 248 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K CIQ F G T + P+ Sbjct: 249 DVFGYCVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEFYTFIGQFYSLNQHILPKE 308 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358 + + ++ + + K I P +G K+ +++ A NA S K Sbjct: 309 VHVPRNLDKEMIQSVVDTK-------IVQPARGPKKDMVDLAAHNAKVSLNNKFELISRD 361 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ + P RIE +DNS+I G V MV + K YRK+ + Sbjct: 362 ESRTIKAIEEL-ETQMGIQTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPDKKNYRKYKIK 420 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 VK DD MR V+ RR+S+++ PD++I+DGGKG ++ Sbjct: 421 T--VKGPDDYKSMREVVRRRYSRVLNEG--------------LPLPDLIIVDGGKGHMNG 464 Query: 479 AQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 V +L ++ I + + K K E + E + L Y + R++DE Sbjct: 465 VIDVLQNELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R+K S LD+I+GIG RK LLL+SFG++K + ++ E +I GI Sbjct: 522 HRFAITFHRQTRQKTGLKSILDDIDGIGNKRKTLLLRSFGSIKKMKEATLEDFKNI-GIP 580 Query: 597 KKIACKIYNHFHK 609 + +A ++ HK Sbjct: 581 ENVAKNLHEQLHK 593 >gi|206889707|ref|YP_002249679.1| excinuclease ABC, C subunit [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741645|gb|ACI20702.1| excinuclease ABC, C subunit [Thermodesulfovibrio yellowstonii DSM 11347] Length = 589 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 187/615 (30%), Positives = 311/615 (50%), Gaps = 35/615 (5%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + +P PGVY D G+VLYVGKA NL+ R+KSY S++ R + M+ I + + Sbjct: 2 IDLNTVPSLPGVYLFKDSKGKVLYVGKAKNLRNRLKSYFQSDDLDPRKSKMVKLIKDFSY 61 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT E EAL+LEAN+IK+ KP FN+LLRDDKS+PY+ IT + P + R Sbjct: 62 IVTSNEFEALVLEANLIKQHKPSFNVLLRDDKSYPYLRITVVEEWPKIDVVRKPKKDGNL 121 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGP+ ++ + ++ ++R F +R+C RPC+ +Q+KRC PC G IS E Y Sbjct: 122 YFGPYVPAQSMWEALSFIRRNFPIRTCKYR-LNKPIRPCVQYQMKRCPAPCAGFISREDY 180 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--- 237 M+ V+E FL G L + M + + + +E+A RD++ L I Sbjct: 181 MKGVNEVVLFLKGQKTELLNILYEKMQKLSHELKFEAAAKIRDQIRRLEKIFTQQRVVSQ 240 Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 + MD +Y + + T F G G+ + +K + +++ + Y+ + Sbjct: 241 TLDDMDVIGVYIENSKISVNTLFVRNGLLVGSNDWTVKKAFYESEGELIHAVIEALYSKE 300 Query: 298 P--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P I+L E + ++ ++ G V++ P E++ +++ AL NA K Sbjct: 301 ALIPPPIIVLENLPESLTEIKEWLKEKRGDFVELKTPSLEEEKALLDMALNNAKIHLQSK 360 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 +S + LK+ ++ L IP +I +D S + G +VG V + F KN YR Sbjct: 361 ISPLETS---LKELKQRLNLSEIPSKIGAFDVSTLFGSYSVGSFVYWQDGFFDKNLYRHL 417 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 + ++ DD + M+ ++ R + PD++++DGG G Sbjct: 418 RIKE--IQGIDDYSAMKEIVHRVVKKFNAE---------------LPEPDLILIDGGLGH 460 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 L+AA V+ +L + ++ + +IAK P R G LVL + P ++++R+ Sbjct: 461 LNAAIKVINEL--KEKLNVFAIAKDPDR------LIFPDGRELVLEDKKPSSLLLKKIRN 512 Query: 536 EAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFAI+ H+K RKKA + S L++I GIG R+ LL+ FG++ I ++ E +AS++G Sbjct: 513 EAHRFAISYHKKLRKKATFESLLEKIQGIGKKRRLTLLKHFGSISKIKAATVEEIASLQG 572 Query: 595 ISKKIACKIYNHFHK 609 + ++A K+ +K Sbjct: 573 FNLRLAGKVIEELNK 587 >gi|326560852|gb|EGE11217.1| excinuclease ABC subunit C [Moraxella catarrhalis 7169] gi|326570782|gb|EGE20807.1| excinuclease ABC subunit C [Moraxella catarrhalis BC1] Length = 616 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 207/614 (33%), Positives = 312/614 (50%), Gaps = 32/614 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG+Y+ML +G +LYVGKA +L+ R+ SY + ++ +I I +T Sbjct: 25 LPNRPGIYKMLGKSGEILYVGKAKSLKNRVGSYFAKTIEHPKTQALVQRIEQIEIIITRG 84 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSYFGP 124 E EALLLE N+IK +P +N+LLRDDKS+ YI I+ K P L R QG +FGP Sbjct: 85 ETEALLLEQNLIKNHRPPYNVLLRDDKSYLYIYIST-DKFPRLSIGRGKGRYTQGRFFGP 143 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + S ++++ +QR F +RSC +S F R RPCL +QIKRC PC G +S+E+Y V Sbjct: 144 YPSARNAKESVQLMQRLFMIRSCTNSFFAQRQRPCLEYQIKRCKAPCVGMVSAEQYQSDV 203 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRM 242 A FL G +H ++ + + M +A ++E A +RDRLA +S +Q Sbjct: 204 RAALAFLQGHSHEVQAILVKKMEEAAAALNFEQAAFYRDRLAMISDLQAKQAVFRLQGEA 263 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT--DSESTNAQILSYFLRQFYTD--KP 298 D F++ + + GQ G +F + +N + L FL FY Sbjct: 264 DVFAIAADAGAVAVCVLTVRGGQVLGVKNYFPDDIEPAIKSNQERLKEFLLSFYFQVSDD 323 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P+ I+ S EE S+L Q+G + I + + A +NA+ + + KL Sbjct: 324 LPDEIISSVAIEEASILADILQVQFGKRTTIKHKVTTHRDDWLSIANLNANNALSAKLKD 383 Query: 359 EISHQMILKDFTK--KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 Q + + RIE +D SH MG +A+G VV +NG K YR++ Sbjct: 384 SRELQARFEQLKQVLAPITTCTIDRIECFDISHTMGEAAIGSCVVFDQNGPKKRDYRQYA 443 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 +H + DD A MR VL RR+++ PD++++DGGKGQL Sbjct: 444 IHD--ITAGDDYAAMRQVLMRRYTK-------------------HPLPDLLLIDGGKGQL 482 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 + A VL +L ++ +AKG R AG+E E + L L+ I ++RDE Sbjct: 483 NVAIEVLSELGKLTDTLLVGVAKGEGRKAGLEVLHFVAHEPIDLPADSKALHLIMQIRDE 542 Query: 537 AHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 AHRFAIT HRK+R KK + S L+ I G+G +R+R LL FG ++ + +S + +A ++GI Sbjct: 543 AHRFAITAHRKKRDKKRSSSVLEVIPGLGQVRRRDLLNHFGGIQQLLGASQDEIAQVKGI 602 Query: 596 SKKIACKIYNHFHK 609 +A IY H+ Sbjct: 603 GPMLAGTIYKALHE 616 >gi|82750753|ref|YP_416494.1| excinuclease ABC subunit C [Staphylococcus aureus RF122] gi|119367844|sp|Q2YXC9|UVRC_STAAB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|82656284|emb|CAI80698.1| excinuclease ABC subunit C [Staphylococcus aureus RF122] gi|323440697|gb|EGA98407.1| excinuclease ABC subunit C [Staphylococcus aureus O11] gi|323442360|gb|EGA99989.1| excinuclease ABC subunit C [Staphylococcus aureus O46] Length = 593 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 180/613 (29%), Positives = 284/613 (46%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D +V+YVGKA L+ R++SY H + T ++ +I F VT + Sbjct: 15 VPMEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVGEIRRFEFIVTSS 73 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L R G YFGP+ Sbjct: 74 ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLLVTRTVKQGTGKYFGPY 132 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + ++T L R + R + + CL + I +C GPC ++ KY + Sbjct: 133 PNAYSAQETKKLLDRIYPYRK----CDKMPDKLCLYYHIGQCLGPCVYDVDLSKYAQMTK 188 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 E FL+G + + + + M A+ D+E A +RD + + ++ N + Sbjct: 189 EITDFLNGEDKTILKSLEERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIR 248 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K CIQ F G T + P+ Sbjct: 249 DVFGYSVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEFYTFIGQFYSLNQHILPKE 308 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358 + + ++ + + K I P +G K+ +++ A NA S K Sbjct: 309 VHVPRNLDKEMIQSVVDTK-------IVQPARGPKKDMVDLAAHNAKVSLNNKFELISRD 361 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ + + P RIE +DNS+I G V MV + K YRK+ + Sbjct: 362 ESRTIKAIEELGTQMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPDKKNYRKYKIK 420 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 VK DD MR V+ RR+S+++ PD++I+DGGKG ++ Sbjct: 421 T--VKGPDDYKSMREVVRRRYSRVLNEG--------------LPLPDLIIVDGGKGHMNG 464 Query: 479 AQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 V +L ++ I + + K K E + E + L Y + R++DE Sbjct: 465 VIDVLQNELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R+K S LD+I+GIG RK LLL+SFG++K + ++ E +I GI Sbjct: 522 HRFAITFHRQTRQKTGLKSILDDIDGIGSKRKTLLLRSFGSIKKMKEATLEDFKNI-GIP 580 Query: 597 KKIACKIYNHFHK 609 + +A ++ HK Sbjct: 581 ENVAKNLHEQLHK 593 >gi|291166051|gb|EFE28097.1| excinuclease ABC subunit C [Filifactor alocis ATCC 35896] Length = 618 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 179/621 (28%), Positives = 312/621 (50%), Gaps = 39/621 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRFTVT 63 +P PGVY M + A +V+YVGKA +L+ R+ Y + HT +++ M+S ++ + VT Sbjct: 11 TLPSSPGVYLMKNDADKVIYVGKAVSLKNRVSQYFRKSGHTDLKVSAMVSNVSYFDYIVT 70 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E+EAL+LE N+IK P +NILLRDDK++PY+ +T + + P + K R + YFG Sbjct: 71 DSEMEALILENNLIKEYNPPYNILLRDDKTYPYVKVTVQEEFPRVIKTRKVTKDGSKYFG 130 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFR---HRTRPCLLFQIKRCSGPCTGEISSEKY 180 P+ +V A+ + +++LQ + +R+C + + RPCL + I RC GPCTG+ ++Y Sbjct: 131 PYTNVFALNEILDTLQELYPIRTCRREIRKSIERGERPCLNYYIHRCIGPCTGKADKKEY 190 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND---- 236 + E FL G + ++ + M QA+++ +E A RD+L +S + Sbjct: 191 NAMIEEILLFLQGKSDDIVSILTDKMKQASVEMRFEDAAKFRDKLQGISSLFESQKLVSA 250 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 D S ++ IQ + G+ G+ F+ K +S + S+ + + Sbjct: 251 DNDKHQDYISYHNEDGNVMIQIFYIRDGKMLGSDHFYFKKTEQSREEVVSSFIKQFYLNT 310 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 PE I + E ++ LL + G K + +P +GEKRK++ NA +++ ++ Sbjct: 311 NFIPEQIFVEESFDDMELLAKHLSGKKGKKTEFIIPIRGEKRKLLNLVRKNAEQNYIKEN 370 Query: 357 S----TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + +L++ L P RIE +D S+I G +VG VV + +Y Sbjct: 371 NIVDLQKRKKHQVLEELQDIMKLNTFPHRIEAFDISNISGVDSVGGQVVFIDGKKAPKEY 430 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472 RK+ + V+ DD + ++ V+ERR P+ PD+ ++DGG Sbjct: 431 RKYRIKS--VEGPDDYSSLKEVIERRVQH-------------------PNLPDLFLMDGG 469 Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532 KGQ+S + +L+ + ++ I + + K K E ++ + + I Sbjct: 470 KGQVSVIRNLLEDIGLD--IPVFGLYKDDKHRTKG---ICSDEELFEIDKKSDVYKLIYA 524 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +++E HRFAI HR R+K S LD+I G+G +K +LL+ F +VK I + E L++ Sbjct: 525 IQEEVHRFAIEYHRSLREKHLSRSELDDIPGVGSKKKMILLKEFKSVKNIKEKTEEELSA 584 Query: 592 IEGISKKIACKIYNHFHKNTS 612 ++GI ++ A I +F K Sbjct: 585 VKGIDRRTAKNIVEYFDKKNP 605 >gi|15924136|ref|NP_371670.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus Mu50] gi|15926730|ref|NP_374263.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus N315] gi|148267638|ref|YP_001246581.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus JH9] gi|150393693|ref|YP_001316368.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus JH1] gi|156979468|ref|YP_001441727.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus Mu3] gi|253317071|ref|ZP_04840284.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253733617|ref|ZP_04867782.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus TCH130] gi|255005932|ref|ZP_05144533.2| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795124|ref|ZP_05644103.1| excinuclease ABC, C subunit [Staphylococcus aureus A9781] gi|258407168|ref|ZP_05680317.1| excinuclease ABC subunit C [Staphylococcus aureus A9763] gi|258421741|ref|ZP_05684662.1| excinuclease ABC, C subunit [Staphylococcus aureus A9719] gi|258432915|ref|ZP_05688604.1| excinuclease ABC subunit C [Staphylococcus aureus A9299] gi|258443405|ref|ZP_05691748.1| excinuclease ABC subunit C [Staphylococcus aureus A8115] gi|258454908|ref|ZP_05702871.1| excinuclease ABC subunit C [Staphylococcus aureus A5937] gi|269202759|ref|YP_003282028.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus ED98] gi|282894173|ref|ZP_06302404.1| excinuclease ABC, C subunit [Staphylococcus aureus A8117] gi|282928668|ref|ZP_06336265.1| excinuclease ABC, C subunit [Staphylococcus aureus A10102] gi|295405951|ref|ZP_06815760.1| excinuclease ABC [Staphylococcus aureus A8819] gi|296275633|ref|ZP_06858140.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus MR1] gi|297246511|ref|ZP_06930349.1| excinuclease ABC [Staphylococcus aureus A8796] gi|54039845|sp|P67429|UVRC_STAAN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|54042753|sp|P67428|UVRC_STAAM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|189038098|sp|A7X172|UVRC_STAA1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|189038119|sp|A6U0W3|UVRC_STAA2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|189038120|sp|A5IS32|UVRC_STAA9 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|13700946|dbj|BAB42242.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus N315] gi|14246916|dbj|BAB57308.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus Mu50] gi|147740707|gb|ABQ49005.1| Excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus JH9] gi|149946145|gb|ABR52081.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus JH1] gi|156721603|dbj|BAF78020.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus Mu3] gi|253728416|gb|EES97145.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus TCH130] gi|257789096|gb|EEV27436.1| excinuclease ABC, C subunit [Staphylococcus aureus A9781] gi|257841323|gb|EEV65768.1| excinuclease ABC subunit C [Staphylococcus aureus A9763] gi|257842074|gb|EEV66502.1| excinuclease ABC, C subunit [Staphylococcus aureus A9719] gi|257849355|gb|EEV73332.1| excinuclease ABC subunit C [Staphylococcus aureus A9299] gi|257851495|gb|EEV75434.1| excinuclease ABC subunit C [Staphylococcus aureus A8115] gi|257862788|gb|EEV85553.1| excinuclease ABC subunit C [Staphylococcus aureus A5937] gi|262075049|gb|ACY11022.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus ED98] gi|282589707|gb|EFB94793.1| excinuclease ABC, C subunit [Staphylococcus aureus A10102] gi|282763659|gb|EFC03788.1| excinuclease ABC, C subunit [Staphylococcus aureus A8117] gi|285816826|gb|ADC37313.1| Excinuclease ABC subunit C [Staphylococcus aureus 04-02981] gi|294969386|gb|EFG45406.1| excinuclease ABC [Staphylococcus aureus A8819] gi|297176617|gb|EFH35880.1| excinuclease ABC [Staphylococcus aureus A8796] gi|312829539|emb|CBX34381.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128544|gb|EFT84549.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus CGS03] gi|329725205|gb|EGG61694.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus 21172] Length = 593 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 180/613 (29%), Positives = 284/613 (46%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D +V+YVGKA L+ R++SY H + T ++ +I F VT + Sbjct: 15 VPMEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVGEIRRFEFIVTSS 73 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L R G YFGP+ Sbjct: 74 ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLLVTRTVKQGTGKYFGPY 132 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + ++T L R + R + + CL + I +C GPC ++ KY + Sbjct: 133 PNAYSAQETKKLLDRIYPYRK----CDKMPDKLCLYYHIGQCLGPCVYDVDLSKYAQMTK 188 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 E FL+G + + + + M A+ D+E A +RD + + ++ N + Sbjct: 189 EITDFLNGEDKTILKSLEERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIR 248 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K CIQ F G T + P+ Sbjct: 249 DVFGYCVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEFYTFIGQFYSLNQHILPKE 308 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358 + + ++ + + K I P +G K+ +++ A NA S K Sbjct: 309 VHVPRNLDKEMIQSVVDTK-------IVQPARGPKKDMVDLAAHNAKVSLNNKFELISRD 361 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ + + P RIE +DNS+I G V MV + K YRK+ + Sbjct: 362 ESRTIKAIEELGTQMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPDKKNYRKYKIK 420 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 VK DD MR V+ RR+S+++ PD++I+DGGKG ++ Sbjct: 421 T--VKGPDDYKSMREVVRRRYSRVLNEG--------------LPLPDLIIVDGGKGHMNG 464 Query: 479 AQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 V +L ++ I + + K K E + E + L Y + R++DE Sbjct: 465 VIDVLQNELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R+K S LD+I+GIG RK LLL+SFG++K + ++ E +I GI Sbjct: 522 HRFAITFHRQTRQKTGLKSILDDIDGIGNKRKTLLLRSFGSIKKMKEATLEDFKNI-GIP 580 Query: 597 KKIACKIYNHFHK 609 + +A ++ HK Sbjct: 581 ENVAKNLHEQLHK 593 >gi|302332754|gb|ADL22947.1| glycosyl transferase, group 2 family protein [Staphylococcus aureus subsp. aureus JKD6159] Length = 593 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 180/613 (29%), Positives = 284/613 (46%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D +V+YVGKA L+ R++SY H + T ++ +I F VT + Sbjct: 15 VPMEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVGEIRRFEFIVTSS 73 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L R G YFGP+ Sbjct: 74 ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLLVTRTVKQGTGKYFGPY 132 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + ++T L R + R + + CL + I +C GPC ++ KY + Sbjct: 133 PNAYSAQETKKLLDRIYPYRK----CDKMPDKLCLYYHIGQCLGPCVYDVDLSKYAQMTK 188 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 E FL+G + + + + M A+ D+E A +RD + + ++ N + Sbjct: 189 EITGFLNGEDKTILKSLEERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIR 248 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K CIQ F G T + P+ Sbjct: 249 DVFGYSVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEFYTFIGQFYSLNQHILPKE 308 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358 + + ++ + + K I P +G K+ +++ A NA S K Sbjct: 309 VHVPRNLDKEMIQSVVDTK-------IVQPVRGPKKDMVDLAAHNAKVSLNNKFELISRD 361 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ + + P RIE +DNS+I G V MV + K YRK+ + Sbjct: 362 ESRTIKAIEELGTQMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFIDGKPDKKNYRKYKIK 420 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 VK DD MR V+ RR+S+++ PD++I+DGGKG ++ Sbjct: 421 T--VKGPDDYKSMREVVRRRYSRVLNEG--------------LPLPDLIIVDGGKGHMNG 464 Query: 479 AQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 V +L ++ I + + K K E + E + L Y + R++DE Sbjct: 465 VIDVLQNELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R+K S LD+I+GIG RK LLL+SFG++K + ++ E +I GI Sbjct: 522 HRFAITFHRQTRQKTGLKSILDDIDGIGSKRKTLLLRSFGSIKKMKEATLEDFKNI-GIP 580 Query: 597 KKIACKIYNHFHK 609 + +A ++ HK Sbjct: 581 ENVAKNLHEQLHK 593 >gi|330685730|gb|EGG97366.1| excinuclease ABC, C subunit [Staphylococcus epidermidis VCU121] Length = 594 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 177/613 (28%), Positives = 285/613 (46%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D +V+YVGKA L+ R++SY H + T ++S+I N F VT + Sbjct: 15 VPLEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVSEIRNFEFIVTSS 73 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L R G YFGP+ Sbjct: 74 ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKHPRLIVTRTVKKGTGKYFGPY 132 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + ++T L R + R + + CL + I +C GPC ++ +KY + Sbjct: 133 PNAYSAQETKKLLDRIYPFRK----CDKMPDKLCLYYHIGQCMGPCVYDVDLDKYAQMTK 188 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E FL G + + + M +A+ D+E A +RD + + ++ + Sbjct: 189 EISDFLHGEDKTILNHLQERMEKASESLDFERAKEYRDLIQHIHNLTKKQKIMSTDNTIR 248 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K CIQ F G T + P+ Sbjct: 249 DVFGYSVSKGWMCIQVFFIRQGNMIKRDTTMIPIQQTEEEEFYTFIGQFYSLNQHILPKE 308 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358 + + + ++ + + K I P +G K+++I+ A NA S K Sbjct: 309 VHVPKHLDKDIIQSVVDTK-------IVQPSRGAKKEMIDLANHNAEVSLNNKFELIARD 361 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ ++ + P RIE +DNS+I G V MV + K YRK+ + Sbjct: 362 ESRTVKAIEELGERMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPDKKGYRKYKIK 420 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++++ PD++I+DGGKG ++ Sbjct: 421 T--VEGPDDYKSMREVVRRRYTRVLNEG--------------TPLPDLIIVDGGKGHMNG 464 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 VL+ +L ++ I + + K K E + E + L Y + R++DE Sbjct: 465 VMDVLENELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R+K S LD+I GIG RK LL++FG++K + +S E L G+ Sbjct: 522 HRFAITFHRQTRQKTGLKSVLDDIEGIGAKRKTKLLRTFGSIKKMKEASLEELKK-SGLP 580 Query: 597 KKIACKIYNHFHK 609 + +A + + Sbjct: 581 ENVAKNLQHALQN 593 >gi|89889987|ref|ZP_01201498.1| excinuclease ABC, C subunit [Flavobacteria bacterium BBFL7] gi|89518260|gb|EAS20916.1| excinuclease ABC, C subunit [Flavobacteria bacterium BBFL7] Length = 599 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 188/621 (30%), Positives = 300/621 (48%), Gaps = 52/621 (8%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PGVYQ D ++LYVGKA NL+KR+ SY N+ ++RI M+ +I I V T Sbjct: 13 LPTTPGVYQYYDKDHKLLYVGKAKNLKKRVSSYFTKNHDSYRIKSMVKKIVTIEHIVVET 72 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E++ALLLE ++IK PR+NI+LRDDK++P++ I K + P ++ R Y+GPF Sbjct: 73 EMDALLLENSLIKNRNPRYNIMLRDDKTYPWLCI-KKERFPRVFLTRRMIKDGSEYYGPF 131 Query: 126 ASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 +SV V ++ ++ + LR+C D + + + CL + I C+GPC +S Y Sbjct: 132 SSVKTVRALLDLIKGLYPLRTCKYDLSADKINAGKYKVCLEYHIGNCAGPCENLMSETAY 191 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--- 237 E + + + G N + M + +E A +++L L Q+ + Sbjct: 192 AENIDNVRNIVKGDYKNASKHFESQMMELASNMQFEDAQRIKEKLEILQKYQSKSTVVNS 251 Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD- 296 +D FSL ++ A I G + T +K E T+ ++L + + Sbjct: 252 KITDVDVFSLISDETHAYINYLQLSHGAIVRSHTLEIKKKLEETDQELLEIAIIELRQRF 311 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 + + + E + ++K+T+P+ G+K+KI++ +L NA ++ Sbjct: 312 NSQCKEVYVPFEVKLGD------------QIKVTIPQLGDKKKIVDLSLRNAKFYRQEQF 359 Query: 357 ------STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + + ++ L P IE +DNS+I G + V VV K Sbjct: 360 KTIKIVDPDRHVKRLMAQMKADLRLDEEPVHIECFDNSNIQGTNPVAACVVFKNGKPSKK 419 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YR FN+ V+ DD A M V+ RR+ +L++ E L P +V++D Sbjct: 420 DYRNFNIKT--VEGPDDFASMEEVVHRRYRRLLEEGEPL--------------PQLVVVD 463 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQLS+ + +L + +ITII IAK + E F+ L L+ R L I Sbjct: 464 GGKGQLSSGLKAIDRLGLRGKITIIGIAKRLE-----ELFYPNDPVPLYLDKRSETLKVI 518 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 Q++R+EAHRF IT HR +R K A + LD I GIG LL+ F +VK I +S + L Sbjct: 519 QQMRNEAHRFGITHHRNKRSKQAIETELDTIPGIGEKTAVELLRHFRSVKRIKTASKKEL 578 Query: 590 ASIEGISKKIACKIYNHFHKN 610 I G+S+ A KI + + Sbjct: 579 EDIIGVSR--AQKIIDFYKNE 597 >gi|298694434|gb|ADI97656.1| Excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus ED133] Length = 593 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 179/613 (29%), Positives = 283/613 (46%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D +V+YVGKA L+ R++SY H + T ++ +I F VT + Sbjct: 15 VPMEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVGEIRRFEFIVTSS 73 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L R G YFGP+ Sbjct: 74 ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLLVTRTVKQGTGKYFGPY 132 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + ++T L R + R + + CL + I +C GPC + KY + Sbjct: 133 PNAYSAQETKKLLDRIYPYRK----CDKMPDKLCLYYHIGQCLGPCVYNVDLSKYAQMTK 188 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 E FL+G + + + + M A+ D+E A +RD + + ++ N + Sbjct: 189 EITDFLNGEDKTILKSLEERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIR 248 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K CIQ F G T + P+ Sbjct: 249 DVFGYSVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEFYTFIGQFYSLNQHILPKE 308 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358 + + ++ + + K I P +G K+ +++ A NA S K Sbjct: 309 VHVPRNLDKEMIQSVVDTK-------IVQPARGPKKDMVDLAAHNAKVSLNNKFELISRD 361 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ + + P RIE +DNS+I G V MV + K YRK+ + Sbjct: 362 ESRTIKAIEELGTQMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPDKKNYRKYKIK 420 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 VK DD MR V+ RR+S+++ PD++I+DGGKG ++ Sbjct: 421 T--VKGPDDYKSMREVVRRRYSRVLNEG--------------LPLPDLIIVDGGKGHMNG 464 Query: 479 AQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 V +L ++ I + + K K E + E + L Y + R++DE Sbjct: 465 VIDVLQNELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R+K S LD+I+GIG RK LLL++FG++K + ++ E +I GI Sbjct: 522 HRFAITFHRQTRQKTGLKSILDDIDGIGGKRKTLLLRTFGSIKKMKEATLEDFKNI-GIP 580 Query: 597 KKIACKIYNHFHK 609 + +A ++ HK Sbjct: 581 ENVAKNLHEQLHK 593 >gi|86157705|ref|YP_464490.1| excinuclease ABC subunit C [Anaeromyxobacter dehalogenans 2CP-C] gi|119367624|sp|Q2IQH0|UVRC_ANADE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|85774216|gb|ABC81053.1| Excinuclease ABC subunit C [Anaeromyxobacter dehalogenans 2CP-C] Length = 707 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 197/669 (29%), Positives = 309/669 (46%), Gaps = 74/669 (11%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHR--ITHMISQINNIR 59 +++P PG Y M D AG V+YVGKA +L+ R++SY + R + + + ++ Sbjct: 8 KLDELPAEPGCYLMKDRAGEVVYVGKASSLRSRVRSYFDAGRGDQRAFVALLDGLLGDLE 67 Query: 60 FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI-- 117 VT +E EA+LLE +IK+ +PRFN+ LRDDK F + + ++H P L R Sbjct: 68 VIVTRSEKEAVLLENELIKKHRPRFNVRLRDDKDFIVLKLDERHPYPRLEVRRAREKRQP 127 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 YFGP++S ++ +T+ + R F LR+C+D VF HR RPC+L+QI RC PC E+ + Sbjct: 128 GARYFGPYSSASSIRETLRMVNRHFQLRTCSDHVFDHRKRPCILYQIHRCPAPCVYEVPA 187 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E+Y + V +A +FL G L E++ M A +E A RD+L A+ Sbjct: 188 EEYRQSVEDAVEFLEGREGELVERLRGRMAGAAEGLRFEEAARLRDQLQAVERSLEKQRV 247 Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D LY +Q G+ + + E +ILS FL +Y Sbjct: 248 LMSDRGDRDVIGLYREGPDLVVQVLSMRAGKLQDAQAH-PFREQEFPAEEILSSFLSLYY 306 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P+ IL+ E + L ++ G +V++ P++G K +++ A NA + Sbjct: 307 EHTDAPDEILVPLEPVQAEALADVLSERRGRRVRLLTPQRGAKADLLDVARRNAEQGFRA 366 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + + L K L P+ +E YD S G AVG V + + K YR+ Sbjct: 367 WHEHDERREQALASLAKALHLARPPRWMECYDISTFQGALAVGSGVSMKDGEPDKANYRR 426 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V QDD AM+ V+ RR + + + PD++++DGGKG Sbjct: 427 YKVK--AVAGQDDFAMLHEVVTRRLRRALGEGQ---------------LPDLIVIDGGKG 469 Query: 475 QLSAAQGVLKKLNVENR----------ITIISIAK------------------------- 499 QL+AA K L V R + ++ +AK Sbjct: 470 QLNAALAAAKDLGVPTRPSPGNPDAPFVELVGLAKSRLVDGPALGTARVVARRGRRAEAR 529 Query: 500 -------------GPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546 + F + + +VL L+ + RLRDEAHRFAIT HR Sbjct: 530 LADAAEAAEKGFVSELARSPERVFLPGRKDPVVLRQNSAELFLLARLRDEAHRFAITFHR 589 Query: 547 K-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 K RR++ S L+EI GIG RKR LL+ FG ++ + ++PE +A +EG + A ++ Sbjct: 590 KLRRERNFQSVLEEIPGIGEGRKRALLRHFGALRRVREATPEEIAQVEGFGPRQAAAVHA 649 Query: 606 HFHKNTSHT 614 FH+ + Sbjct: 650 FFHRPDAPP 658 >gi|146320599|ref|YP_001200310.1| excinuclease ABC subunit C [Streptococcus suis 98HAH33] gi|145691405|gb|ABP91910.1| Nuclease subunit of the excinuclease complex [Streptococcus suis 98HAH33] Length = 620 Score = 472 bits (1214), Expect = e-130, Method: Composition-based stats. Identities = 174/609 (28%), Positives = 298/609 (48%), Gaps = 41/609 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y + G+++YVGKA NL+ R++SY + T + ++++I + F Sbjct: 36 KLELLPDSPGCYLHKNKYGKIIYVGKAKNLRNRVRSYFRGAHDT-KTEALVAEIADFEFI 94 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+I+ KPR+NI+L+DDKS+P+I IT K + P L R G Y Sbjct: 95 VTDSNIEALLLEINLIQENKPRYNIMLKDDKSYPFIKIT-KERHPRLLITRQIKKDGGQY 153 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A +T+ L+R + R C ++ CL + + +C S Y Sbjct: 154 FGPYPDVGAANQTLKLLERLYPFRKCKLPENKY----CLYYHLGQCLAHGDNMPSLSDYD 209 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + E +FL+G + + +++ M A ++E A +RD L ++S ++ + + Sbjct: 210 KMAKEVAQFLTGHDDKIIKEVQDKMKAAAGNLEFEKAAEYRDVLQSISTLRTKQRVMAHD 269 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ +++ + Sbjct: 270 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERNVNLFPYYNDAGEDFLTYIGQFYRDQQHL 329 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ ++ ++ + K P++GEK+++I A NA + Sbjct: 330 IPSEVLIPQDIDQEAVEALVDTKVIK-------PQRGEKKQLINLATKNARVSLEQKFNL 382 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +++ + +P RIE +DNS+IMG S V MVV K +YRK Sbjct: 383 LEKNLEKTYGAVENIGQLLGIPTPV-RIEAFDNSNIMGTSPVSAMVVFENGVPNKKEYRK 441 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + N V+ DD A MR VL+RR+S+++++ + PD++I+DGG+G Sbjct: 442 Y--KINTVEGPDDYASMREVLQRRYSRVLRDG--------------LTPPDLIIIDGGQG 485 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+++ + I I + K K E F E + L + + R++ Sbjct: 486 QVNVAKQVIEQ-ELGMSIPIAGLQKNDKHQT-HELLFGNPLEVVELPRNSQEFFLLHRIQ 543 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAI HR+ R K ++S LD I G+GP RK+ L++ F ++ I +S + +A Sbjct: 544 DEVHRFAIEFHRQVRSKNSFSSKLDGIEGLGPKRKQTLMKHFKSIGNIQSASLQEIAEA- 602 Query: 594 GISKKIACK 602 G+ K+A K Sbjct: 603 GVPYKVADK 611 >gi|326566918|gb|EGE17057.1| excinuclease ABC subunit C [Moraxella catarrhalis 103P14B1] gi|326569751|gb|EGE19801.1| excinuclease ABC subunit C [Moraxella catarrhalis BC8] gi|326571643|gb|EGE21658.1| excinuclease ABC subunit C [Moraxella catarrhalis BC7] Length = 616 Score = 472 bits (1214), Expect = e-130, Method: Composition-based stats. Identities = 208/614 (33%), Positives = 313/614 (50%), Gaps = 32/614 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG+Y+ML +G +LYVGKA +L+ R+ SY + ++ +I I +T Sbjct: 25 LPNRPGIYKMLGKSGEILYVGKAKSLKNRVGSYFAKTIEHPKTQALVQRIEQIEIIITRG 84 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSYFGP 124 E EALLLE N+IK +P +N+LLRDDKS+ YI I+ K P L R QG +FGP Sbjct: 85 ETEALLLEQNLIKNHRPPYNVLLRDDKSYLYIYIST-DKFPRLSIGRGKGRYTQGRFFGP 143 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + S ++++ +QR F +RSC +S F R RPCL +QIKRC PC G +S+E+Y V Sbjct: 144 YPSARNAKESVQLMQRLFMIRSCTNSFFAQRQRPCLEYQIKRCKAPCVGMVSAEQYQSDV 203 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRM 242 A FL G +H ++ + + M +A ++E A +RDRLA +S +Q Sbjct: 204 RAALAFLQGHSHEVQAILVKKMEEAAAALNFEQAAFYRDRLAMISDLQAKQAVFRLQGEA 263 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT--DSESTNAQILSYFLRQFYTD--KP 298 D F++ + + GQ G +F + +N + L FL FY Sbjct: 264 DVFAIAADAGAVAVCVLTVRGGQVLGVKNYFPDDIEPAIKSNQERLKEFLLSFYFQVSDD 323 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P+ I+ S EE S+L Q+G + I + + A +NA+ + + KL Sbjct: 324 LPDEIISSVAIEEASILADILQVQFGKRTTIKHKVTTHRDDWLSIANLNANNALSAKLKD 383 Query: 359 EISHQMILKDFTK--KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 Q + + RIE +D SH MG +A+G VV +NG K YR++ Sbjct: 384 SRELQARFEQLKQVLAPITTCTIDRIECFDISHTMGEAAIGSCVVFDQNGPKKRDYRQYA 443 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 +H + DD A MR VL RR+++ PD++++DGGKGQL Sbjct: 444 IHD--ITAGDDYAAMRQVLMRRYTK-------------------HPLPDLLLIDGGKGQL 482 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 + A VL +L ++S+AKG R AG+E E + L L+ I ++RDE Sbjct: 483 NVAIEVLSELGKLTDTLLVSVAKGEGRKAGLEVLHFVTHEPIDLPADSKALHLIMQIRDE 542 Query: 537 AHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 AHRFAIT HRK+R KK + S L+ I G+G +R+R LL FG ++ + +S + +A ++GI Sbjct: 543 AHRFAITAHRKKRDKKRSSSVLEVIPGLGQVRRRDLLNHFGGIQQLLGASQDEIAQVKGI 602 Query: 596 SKKIACKIYNHFHK 609 +A IY H+ Sbjct: 603 GPMLAGTIYKALHE 616 >gi|78184688|ref|YP_377123.1| excinuclease ABC subunit C [Synechococcus sp. CC9902] gi|78168982|gb|ABB26079.1| Excinuclease ABC subunit C [Synechococcus sp. CC9902] Length = 679 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 189/632 (29%), Positives = 303/632 (47%), Gaps = 29/632 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFT 61 + +P PG Y M D R+LYVGK+ L+ R++SY S + + RI M Q+ I F Sbjct: 39 LKDIPAEPGCYLMRDGDDRILYVGKSKTLRSRVRSYFRSRHDLSPRIRLMTRQVCEIEFI 98 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ--G 119 VT +E EAL LE+N+IK +P FN+LL+DDK +PY+ IT P ++ R Sbjct: 99 VTDSEAEALALESNLIKNHQPHFNVLLKDDKKYPYLCITWSESYPRIFITRRRRFRSPLD 158 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++GP+ V + +T+ ++R F LR + + RT CL + I RC G C +ISS+ Sbjct: 159 RFYGPYVDVGLLRRTLFLVKRVFPLRQRPRPLHQDRT--CLNYSIGRCPGVCQEKISSDD 216 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + + + G + L+ + M++ + DYESA RD+L L + Sbjct: 217 YHQTLRKVAMVFQGRSDELQNLLQEQMHKYADRTDYESAARVRDQLQGLDQLTADQKMSL 276 Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D +L ++ LA +Q G+ G + + + IL + + Y+ Sbjct: 277 PDSSVSRDVLALACDERLAAVQLFQMRAGKLVGRLGYTAD-AAGLSPGLILQRVIEEHYS 335 Query: 296 DKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 P +L+ + SLLE +Q KV+I P++ +K +IE NA Sbjct: 336 QVDAVEVPPQLLVQHPLPQQSLLEEWLTEQRERKVQIHCPQRRQKADLIELVQRNAEFEL 395 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + + +D + LP P+RIE YD SHI G AV VV + K Y Sbjct: 396 LRAKQGQEQQALSTEDLAQLLDLPLPPRRIEGYDISHIQGSDAVASQVVFIDGLPAKQHY 455 Query: 413 RKFNLHPNDV---KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE-------YSFPS 462 RK+ + + + + D AM ++ R + L+ +Q+ Sbjct: 456 RKYKIQSSSIRAGHSDDFMAMAEIMRRRFRRWARAKADGLDLGALRQKGGSALQTDGLND 515 Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522 WPD+V++DGGKGQLSA L++LN+ + + + S+AK + E F + + L Sbjct: 516 WPDLVMIDGGKGQLSAVMEALRELNLHDDLNVCSLAKQRE-----EVFLPGESQPLESEA 570 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMI 581 + ++RLRDEAHRFA++ HR++R + S L +I G+G R R LL F ++ I Sbjct: 571 DQLGVALLRRLRDEAHRFAVSFHRQQRGERMKRSRLSDIPGLGAKRVRDLLSHFHSIDAI 630 Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 +S +TL+ G+ +A I+N FH + Sbjct: 631 QLASVDTLSKAPGVGPVLAQDIFNFFHPTDEN 662 >gi|113954278|ref|YP_730568.1| excinuclease ABC subunit C [Synechococcus sp. CC9311] gi|119367853|sp|Q0IAF4|UVRC_SYNS3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|113881629|gb|ABI46587.1| excinuclease ABC, C subunit [Synechococcus sp. CC9311] Length = 651 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 182/630 (28%), Positives = 305/630 (48%), Gaps = 29/630 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFT 61 + +P PG Y M D R+LYVGK+ L+ R++SY S++ + RI M+ QI I F Sbjct: 16 LKDIPTEPGCYLMRDADDRLLYVGKSKTLRSRVRSYFRSSHDLSPRIRLMVRQICEIEFI 75 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ--G 119 VT +E EAL LE+N+IK +P FN+LL+DDK +PY+ IT P ++ R Sbjct: 76 VTDSEAEALALESNLIKNQQPHFNVLLKDDKKYPYLCITWSEDYPRIFITRRRRFRSPLD 135 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++GP+ V + +T+ ++R F LR ++ +RT CL + I RC G C ++SSE Sbjct: 136 RFYGPYVDVGLLRRTLFLVKRVFPLRQRPRPLYPNRT--CLNYSIGRCPGVCQEKVSSED 193 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + + + G + L++ + + M + + D+ESA RD+L + + Sbjct: 194 YHQILRKVAMVFQGRSDELRQLLNQQMERYAERLDFESAARIRDQLQGIDQLTADQKMSL 253 Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D ++ + + A IQ G+ G F ++ IL + + Y+ Sbjct: 254 PDASVSRDVLAVAQDDHFAAIQLFQMRAGKLVGRLGFAAD-ATDLQAGLILQRVIEEHYS 312 Query: 296 DKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 P +L+ E + L+ +Q KV++ P++ +K +I+ + NA Sbjct: 313 QVDAVEIPPEVLVQHELPQQRLIAEWLSEQRERKVQVLHPQRRQKADLIDLVMRNAEFEL 372 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + ++ + +D + L P+RIE YD SHI G AV VV + K Y Sbjct: 373 GRARQSQEQQALANEDLAQLLELATPPRRIEGYDISHIQGSDAVASQVVFIDGLPAKQHY 432 Query: 413 RKFNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFP--------S 462 R++ + + ++ D M ++ RRF + + + + + S Sbjct: 433 RRYKIQSSSIQAGHSDDFMAMAEIMRRRFRKWARVKAEGADLDQVRRQSSSSLNMDGLHD 492 Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522 WPDVV++DGGKGQLSA L++L++ + + S+AK + E F + + L Sbjct: 493 WPDVVMIDGGKGQLSAVMEALRELDLHEDLVVCSLAKQRE-----EIFLPEAKQPLESEP 547 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMI 581 + ++RLRDEAHRFA+T HR++R ++ S L +I G+GP R R LL F ++ I Sbjct: 548 DQLGVSLLRRLRDEAHRFAVTFHRQQRGQRMKRSRLSDIPGLGPKRVRDLLAHFQSIDAI 607 Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNT 611 +S + L G+ +A +I +FH Sbjct: 608 QLASVDQLHQAPGVGLSLAKQIRAYFHPQE 637 >gi|306820848|ref|ZP_07454471.1| excision endonuclease subunit UvrC [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551120|gb|EFM39088.1| excision endonuclease subunit UvrC [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 605 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 183/618 (29%), Positives = 303/618 (49%), Gaps = 42/618 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 ++P GVY M + ++YVGKA +L+ R++ Y S NN ++ M+S I + VT Sbjct: 14 KLPHSSGVYLMKNKNNEIIYVGKAVSLRNRVRQYFQSQNNMQEKVKAMVSHIEEFEYIVT 73 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E+EAL+LE N+IK KP +NILLRDDK++PYI IT P + K R YFG Sbjct: 74 DSEMEALILENNLIKEYKPPYNILLRDDKTYPYIKITLNEDYPRVLKTRKVEKDGAKYFG 133 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFR---HRTRPCLLFQIKRCSGPCTGEISSEKY 180 P+++ V I+ + TF LR+C+ ++ + + RPCL + I C+GPC G + +Y Sbjct: 134 PYSNAFIVNDIIDLIHSTFKLRTCSRNIQKSIEKKERPCLSYYINICNGPCLGIVDKNEY 193 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--- 237 + E FL + + E + + M A+ K DYE A+++RD++ + + Sbjct: 194 DNTIVEVINFLESKSDVVIESLRQKMYDASKKLDYEKAMMYRDKINGMQEMLEKQKIVST 253 Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + D ++ ++ C+ F G+ GT F D +++LS F++Q+Y + Sbjct: 254 NSFMDKDFLAVEQGDDIYCVFIFFVRGGKVVGTENFIFDIDFNKDESEVLSSFVKQYYIN 313 Query: 297 KP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ- 354 P+ I +S E E+ +L K+ KV + +P +G+K+ +I+ NA + ++ Sbjct: 314 SAYIPKEIYVSHEFEDMDVLAQLLSKKKESKVSVKLPIKGDKKDMIQLVKKNAAETISRK 373 Query: 355 ---KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 + + + +I+K +L +IE YD S+I G +VG VV + Sbjct: 374 EAVDKTKKDNMDLIMKQLKDILSLKTEIHKIESYDISNIQGVDSVGGQVVFVDGKKAPKL 433 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YR++ + V DD + + +L RR PD+++LDG Sbjct: 434 YRRYKVKT--VVGPDDYSSLEEILSRRIKH-------------------EDLPDLILLDG 472 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GKGQ+S + + ++ + I + + K K + + LN + FI Sbjct: 473 GKGQVSVIRKLFEREKIS--IPVFGMYKDDKHTTMG---LCSDMDLFELNRHSKLYKFIA 527 Query: 532 RLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +++E HRFAI HR R KK ++S LD I GIG RK+ LL F ++ I +S E L Sbjct: 528 SIQEEVHRFAIDYHRSLRNKKISFSKLDNIKGIGEKRKKTLLSHFKSINNIKNASIEELE 587 Query: 591 SIEGISKKIACKIYNHFH 608 + + KK A IY +F Sbjct: 588 KV--VDKKSALSIYEYFK 603 >gi|49483309|ref|YP_040533.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus MRSA252] gi|257425197|ref|ZP_05601623.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus 55/2053] gi|257427860|ref|ZP_05604258.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus 65-1322] gi|257430495|ref|ZP_05606877.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus 68-397] gi|257433257|ref|ZP_05609615.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus E1410] gi|257436096|ref|ZP_05612143.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus M876] gi|282903694|ref|ZP_06311582.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus C160] gi|282905463|ref|ZP_06313318.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus Btn1260] gi|282908437|ref|ZP_06316268.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910721|ref|ZP_06318524.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282913921|ref|ZP_06321708.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus M899] gi|282918844|ref|ZP_06326579.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus C427] gi|282923966|ref|ZP_06331642.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus C101] gi|283957889|ref|ZP_06375340.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus A017934/97] gi|293500956|ref|ZP_06666807.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus 58-424] gi|293509913|ref|ZP_06668622.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus M809] gi|293526500|ref|ZP_06671185.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus M1015] gi|295427633|ref|ZP_06820265.1| excinuclease ABC [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591413|ref|ZP_06950051.1| excision endonuclease subunit UvrC [Staphylococcus aureus subsp. aureus MN8] gi|8134803|sp|Q9ZEH3|UVRC_STAAU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|56749748|sp|Q6GHT9|UVRC_STAAR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|3776112|emb|CAA11405.1| excinuclease ABC, subunit C [Staphylococcus aureus] gi|49241438|emb|CAG40122.1| putative excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus MRSA252] gi|257272173|gb|EEV04305.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus 55/2053] gi|257274701|gb|EEV06188.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus 65-1322] gi|257278623|gb|EEV09242.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus 68-397] gi|257281350|gb|EEV11487.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus E1410] gi|257284378|gb|EEV14498.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus M876] gi|282313938|gb|EFB44330.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus C101] gi|282316654|gb|EFB47028.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus C427] gi|282321989|gb|EFB52313.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus M899] gi|282325326|gb|EFB55635.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282328102|gb|EFB58384.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330755|gb|EFB60269.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus Btn1260] gi|282595312|gb|EFC00276.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus C160] gi|283790038|gb|EFC28855.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus A017934/97] gi|290920572|gb|EFD97635.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus M1015] gi|291095961|gb|EFE26222.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus 58-424] gi|291467363|gb|EFF09880.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus M809] gi|295127991|gb|EFG57625.1| excinuclease ABC [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576299|gb|EFH95015.1| excision endonuclease subunit UvrC [Staphylococcus aureus subsp. aureus MN8] gi|312438478|gb|ADQ77549.1| excision endonuclease subunit UvrC [Staphylococcus aureus subsp. aureus TCH60] gi|315193817|gb|EFU24212.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus CGS00] Length = 593 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 180/613 (29%), Positives = 284/613 (46%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D +V+YVGKA L+ R++SY H + T ++ +I F VT + Sbjct: 15 VPMEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVGEIRRFEFIVTSS 73 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L R G YFGP+ Sbjct: 74 ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLLVTRTVKQGTGKYFGPY 132 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + ++T L R + R + + CL + I +C GPC ++ KY + Sbjct: 133 PNAYSAQETKKLLDRIYPYRK----CDKMPDKLCLYYHIGQCLGPCVYDVDLSKYAQMTK 188 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 E FL+G + + + + M A+ D+E A +RD + + ++ N + Sbjct: 189 EITDFLNGEDKTILKSLEERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIR 248 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K CIQ F G T + P+ Sbjct: 249 DVFGYSVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEFYTFIGQFYSLNQHILPKE 308 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358 + + ++ + + K I P +G K+ +++ A NA S K Sbjct: 309 VHVPRNLDKEMIQSVVDTK-------IVQPARGPKKDMVDLAAHNAKVSLNNKFELISRD 361 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ + + P RIE +DNS+I G V MV + K YRK+ + Sbjct: 362 ESRTIKAIEELGTQMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPDKKNYRKYKIK 420 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 VK DD MR V+ RR+S+++ PD++I+DGGKG ++ Sbjct: 421 T--VKGPDDYKSMREVVRRRYSRVLNEG--------------LPLPDLIIVDGGKGHMNG 464 Query: 479 AQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 V +L ++ I + + K K E + E + L Y + R++DE Sbjct: 465 VIDVLQNELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R+K S LD+I+GIG RK LLL+SFG++K + ++ E +I GI Sbjct: 522 HRFAITFHRQTRQKTGLKSILDDIDGIGSKRKTLLLRSFGSIKKMKEATLEDFKNI-GIP 580 Query: 597 KKIACKIYNHFHK 609 + +A ++ HK Sbjct: 581 ENVAKNLHEQLHK 593 >gi|313890066|ref|ZP_07823701.1| excinuclease ABC, C subunit [Streptococcus pseudoporcinus SPIN 20026] gi|313121427|gb|EFR44531.1| excinuclease ABC, C subunit [Streptococcus pseudoporcinus SPIN 20026] Length = 590 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 171/616 (27%), Positives = 286/616 (46%), Gaps = 43/616 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPDNPGCYLHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEMLVSEIADFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + EALLLE N+I++ P++NI L+DDKS+P+I IT+ P L R G Y Sbjct: 67 VTGSNTEALLLEINLIQKNMPKYNIKLKDDKSYPFIKITN-ELFPRLLITRQIKKNDGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + L R F + C + V + C + + +C + Sbjct: 126 FGPYPDSYTANEVKKLLDRIFPFKKCTNPV----NKVCFYYHLGQCKAHTICHTDKAYWD 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 V + K FL+G + + + + M A ++E A RD ++ ++ ++ + Sbjct: 182 GLVEDVKLFLNGKDDKIVDNLKEKMTLAAENMEFERAAEFRDLISGIAKLRTKQRIMSKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ +E+ + + Sbjct: 242 LKDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNEAEDDFLTYIGQFYQDKRHF 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P I + E ++ + I K P++GEK++++ A NA + Sbjct: 302 IPREIFIPAEVDQELVEAIVPTKVIK-------PQKGEKKQLVALATKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 Q ++ + + RIE +DNS+I G S V MVV + K YRK Sbjct: 355 LEKDLKKTQGAIESLGQLMGIARPE-RIEAFDNSNIQGTSPVAAMVVFVDGKASKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + V DD A MR V+ RR+S+++K++ PD++I+DGG G Sbjct: 414 FKIKT--VHGPDDYASMREVIYRRYSRVLKDD--------------LIAPDLIIIDGGPG 457 Query: 475 QLSAAQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 Q++ A+ V+ +L + I I + K K E F + L + + + R+ Sbjct: 458 QVNIAKEVVHGQLGLS--IPIAGLQKNDKHQT-QELLFGDPLAVIDLPRNSEVFFLLHRI 514 Query: 534 RDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 +DE HRFAIT HR+ R K ++S LD I G+GP RK++LL+ F ++ I ++S + + S+ Sbjct: 515 QDEVHRFAITFHRQVRSKNSFSSKLDGIGGLGPKRKQVLLKHFKSLTAIRQASLDDITSL 574 Query: 593 EGISKKIACKIYNHFH 608 GI +K+A + F+ Sbjct: 575 -GIPQKVAQTLLASFN 589 >gi|262383152|ref|ZP_06076289.1| excinuclease ABC, C subunit [Bacteroides sp. 2_1_33B] gi|301311748|ref|ZP_07217673.1| excinuclease ABC subunit C [Bacteroides sp. 20_3] gi|262296030|gb|EEY83961.1| excinuclease ABC, C subunit [Bacteroides sp. 2_1_33B] gi|300830308|gb|EFK60953.1| excinuclease ABC subunit C [Bacteroides sp. 20_3] Length = 611 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 174/617 (28%), Positives = 298/617 (48%), Gaps = 46/617 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG YQ D G ++YVGKA NL++R+ SY + + +++ ++ QI +I++ V T Sbjct: 16 IPEKPGCYQYFDENGTIIYVGKAKNLKRRVSSYFNKVHDSNKTRVLVKQIRDIKYIVVDT 75 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E +ALLLE N+IK+ +PR+N+LL+DDK++P I++ P +++ R+ Y+GP+ Sbjct: 76 EEDALLLENNLIKQYRPRYNVLLKDDKTYPSIVV-KNEYFPRVFQTRNIVRDGSQYYGPY 134 Query: 126 ASVDAVEKTINSLQRTFFLRSCADS-----VFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 S+ + + L+ + LR+C + + R + CL + IKRC GPC G S E+Y Sbjct: 135 PSLFTAKVMLQMLKELYPLRTCKYPLTPESIAQGRYKVCLEYHIKRCKGPCEGLQSLEEY 194 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--- 237 + + E K+ L G + + + M + +E A +++ + + ++ + Sbjct: 195 QQNISEIKEILRGNISQISKHLYEEMQSLAAELKFEEAQKIKEKYEVIENYRSKSTVVTP 254 Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 + + +D F++ N + A + G TF K + T ++LS + + Sbjct: 255 MLHNIDVFTIIENDHSAYVNFMHIGNGAIVQAYTFEYKKRLDETKEELLSLGIIEMRNRF 314 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 ++ V T+P++G+K+K+++ + +N + +L Sbjct: 315 KSTAREIIVP----------FKLDMQLENVTFTIPQRGDKKKLLDLSEMNVKQFKVDRLK 364 Query: 358 T------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 E + ILK+ + L +P IE +DNS+I G AV VV K + Sbjct: 365 QAEKLNPEQRNTRILKEIQEALHLEKLPAHIECFDNSNIQGSDAVAACVVFKMGKPSKQE 424 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YRK+N+ V DD A M+ V+ RR+ + I+ PD++I DG Sbjct: 425 YRKYNIKT--VVGPDDYASMKEVVRRRYGRAIEER--------------SPLPDLIITDG 468 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GKGQ+ + V++ + I I +AK K E F + + + P+ + + Sbjct: 469 GKGQMEVVRSVVED-ELGLSIPIAGLAKDGKHRTS-ELLFGFPPVTVGMRLDSPLFHLLT 526 Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 R++DE HRFAIT H+ +R K S LD I GIG K LLL+ F +VK I +S E L Sbjct: 527 RIQDEVHRFAITFHKDKRSKTQTKSELDTIKGIGEKTKVLLLRHFKSVKRIKEASFEELK 586 Query: 591 SIEGISKKIACKIYNHF 607 S+ I + A + Sbjct: 587 SV--IGEAKAKALQEGL 601 >gi|242279487|ref|YP_002991616.1| excinuclease ABC, C subunit [Desulfovibrio salexigens DSM 2638] gi|242122381|gb|ACS80077.1| excinuclease ABC, C subunit [Desulfovibrio salexigens DSM 2638] Length = 602 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 206/616 (33%), Positives = 308/616 (50%), Gaps = 34/616 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 P PGVY M D +GR++YVGKA L+KR+ SY + + HT + ++S+I++I VT Sbjct: 9 DFPALPGVYLMKDSSGRIIYVGKARELRKRLASYFRAMHKHTPKTRVLVSKIHSIDTLVT 68 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEA++IK+ +PR+N++LRDDK + + K + P L R YFG Sbjct: 69 GTEKEALLLEASLIKKHRPRYNVVLRDDKQYVLFQLDKKSEYPRLRMTRKVVRDGSVYFG 128 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ S +T L + F LR C+DS FR+R RPCL I +C GPC + + YME Sbjct: 129 PYTSSYFARETWKVLGKVFPLRKCSDSAFRNRVRPCLYHDIGQCLGPCVNVVPRQDYMEL 188 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM- 242 VH+ + LSG +L + R M +A+ D+ESA RD++ A+ + Sbjct: 189 VHQVEMLLSGRAGDLIGSLRRQMEEASDALDFESAAKFRDQIKAIQKTVEKQSVVLGERS 248 Query: 243 --DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-KPC 299 D +L + + F G+ FF S ++L+ F+ QFY+ K Sbjct: 249 DIDVIALAESSQGVGLGLLFIRKGRLLDKKHFFWPGLSLEDGEEVLNSFVSQFYSSTKFI 308 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P + + E + E+ ++ V+I P GE+++++E A NA E Sbjct: 309 PPKLFVPFEFDMQGATEL-LSERSKSTVRIVTPHSGEEKRLLEIARKNAAL---GLKEKE 364 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 ++ IL K L P+RIE D SH+ G MVV E K+QYR + P Sbjct: 365 KNNNNILDLLAGKLKLSGPPQRIECIDASHLGGEGMRVGMVVFEEGKPEKSQYRTY-AFP 423 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A + + K+ S P W D++++DGGKGQL++ Sbjct: 424 ELEHSSDDYAALFHWV------------------IKRIDSGPPWADLILIDGGKGQLASV 465 Query: 480 QGVLKK-LNVENRIT-IISIAKGPKRSAGM---EKFFVKKGEALVLNMRDPILYFIQRLR 534 + + + I + SIAKGP R AG F + L L P L ++QR+R Sbjct: 466 EKAFAENWKYDEPIPSLASIAKGPTRKAGELEDRIFRPGRKNHLPLKGGSPELLYLQRVR 525 Query: 535 DEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DEAHRF I RK R+KK S + + GIGP RLL FG+V+ + +S E L++++ Sbjct: 526 DEAHRFVIGRQRKSRKKKVLQSEVLSLPGIGPKTARLLWDEFGSVQKMKEASVEDLSNVQ 585 Query: 594 GISKKIACKIYNHFHK 609 GI KK A +I++ F + Sbjct: 586 GIGKKRAQQIFDAFRE 601 >gi|206602222|gb|EDZ38704.1| Excinuclease ABC, C subunit (UvrC) [Leptospirillum sp. Group II '5-way CG'] Length = 632 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 181/623 (29%), Positives = 296/623 (47%), Gaps = 34/623 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVT 63 +PE PGVY M G VLYVGK+ +L+ R++SY + RI ++S++ ++ T Sbjct: 23 TLPEEPGVYLMKSETGEVLYVGKSRSLKDRVRSYFQETRVRSARIALLVSRVRDLEIIRT 82 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE++AL+LE +IKR +PR+N+LLRDDK++PY+ + P L R YFG Sbjct: 83 KTELDALILENTLIKRYRPRYNVLLRDDKTYPYLKFSWNDPFPRLTITRRVRNDGNLYFG 142 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEKYME 182 P+ + A++ T+ ++RTF L +C + + RPC+ +QIKRC GPC +++E Sbjct: 143 PYPNPSAMKDTLRLIRRTFPLATCTIPLDQPTLERPCVEYQIKRCLGPCVAGLTTETEYR 202 Query: 183 FVHEAKK-FLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 V + FL G +++L + M ++E A RDR + + + + Sbjct: 203 QVAMGVRLFLQGKSNDLLFLLENEMKARAKNLEFEKAAAVRDRYRNVLQVLEKHTVSFPF 262 Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 + +D L + A + G G LK E+++ ++L FL QFY + Sbjct: 263 QHPIDGLYLARSGTTALMLVMHIRNGLLIGKEEVELKNTEEASDEELLVAFLEQFYGKES 322 Query: 299 --CPENILLSEEAEETSLL--EISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P ILL E L+ K+ V+I PK+G+K+ I++ NA + Sbjct: 323 AFLPGEILLPVSLPEEDLMTLSWMSEKKGEDPVRIISPKRGDKKMILDLVRENAEEALNA 382 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + +++ +L + P+ + D S+ V +V + K+ YRK Sbjct: 383 REKRKLNSTELLDEARSLLKRDRPPRLLCCVDISNTGDLLPVASLVTFQDGKPEKSLYRK 442 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + K QDD M+ V+ER++ PD++++DGG Sbjct: 443 FRIR--YEKGQDDFKMLSEVMERQYR-------------------ENPLPDLLVIDGGPL 481 Query: 475 QLSAAQGVLKKLNVENRI-TIISIAKGPKRSAGME-KFFVKKGEALVLNMRDPILYFIQR 532 QL A L+ + + ++S+AK E FF + L+L P+ + + R Sbjct: 482 QLDACVRTLEDMGHHDASRRVVSLAKERTNKNKSERIFFPGQENPLILPGHHPVTHLLVR 541 Query: 533 LRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 LRDEAHRFAI HR R++ +S L I G+GP R++ LLQSFG+VK + ++ E + Sbjct: 542 LRDEAHRFAIKYHRTLREEYLTHSRLLNIPGVGPAREKKLLQSFGSVKNLMEATIEDIVQ 601 Query: 592 IEGISKKIACKIYNHFHKNTSHT 614 G+S ++ IY N Sbjct: 602 NTGLSVALSTSIYQSLRDNQDDP 624 >gi|332522952|ref|ZP_08399204.1| excinuclease ABC, C subunit [Streptococcus porcinus str. Jelinkova 176] gi|332314216|gb|EGJ27201.1| excinuclease ABC, C subunit [Streptococcus porcinus str. Jelinkova 176] Length = 597 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 169/620 (27%), Positives = 285/620 (45%), Gaps = 41/620 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPDSPGCYLHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEMLVSEIADFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + EALLLE N+I++ P++NI L+DDKS+P+I IT+ P L R G Y Sbjct: 67 VTGSNTEALLLEINLIQKNMPKYNIKLKDDKSYPFIKITN-EIFPRLLITRQIKKNDGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + L R F + C + V + C + + +C+ + Sbjct: 126 FGPYPDSYTANEVKKLLDRIFPFKKCTNPV----NKVCFYYHLGQCNAHTICHTDKAYWD 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 V + K FL+G + + + + M A ++E A RD ++ ++ ++ + Sbjct: 182 GLVEDVKLFLNGKDDKIVDNLKEKMTVAAENMEFERAAEFRDLISGIAKLRTKQRIMSKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ + + + + Sbjct: 242 LKDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNNAEDDFLTYIGQFYQDKRHF 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P I + E ++ + I K P++GEK++++ A NA + Sbjct: 302 IPSEIFIPSEVDQELVEAIVPTKVIK-------PQRGEKKQLVALATKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 Q ++ + + RIE +DNS+I G S V MVV + K YRK Sbjct: 355 LEKDLKKTQGAIESLGQLMGIARPE-RIEAFDNSNIQGTSPVAAMVVFVDGKASKQDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V+ DD A MR V+ RR+S+++K++ PD++I+DGG G Sbjct: 414 YKIKT--VQGPDDYASMREVIYRRYSRVLKDD--------------LVAPDLIIIDGGPG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V+ + + I I + K K E F + L + + R++ Sbjct: 458 QVNIAKDVVHR-QLGLSIPIAGLQKNDKHQT-QELLFGDPLAVIDLPRNSEAFFLLHRIQ 515 Query: 535 DEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K + S LD I+G+GP RK+ LL+ F ++ IS++S + + S+ Sbjct: 516 DEVHRFAITFHRQVRIKNSFSSKLDGIDGLGPKRKQALLKHFKSLTAISQASLDDITSL- 574 Query: 594 GISKKIACKIYNHFHKNTSH 613 GI +K+A + F + Sbjct: 575 GIPQKVAESLLASFANKEAE 594 >gi|150009554|ref|YP_001304297.1| excinuclease ABC subunit C [Parabacteroides distasonis ATCC 8503] gi|255013153|ref|ZP_05285279.1| excinuclease ABC subunit C [Bacteroides sp. 2_1_7] gi|256838286|ref|ZP_05543796.1| excinuclease ABC, C subunit [Parabacteroides sp. D13] gi|298373959|ref|ZP_06983917.1| excinuclease ABC subunit C [Bacteroides sp. 3_1_19] gi|149937978|gb|ABR44675.1| excinuclease ABC subunit C [Parabacteroides distasonis ATCC 8503] gi|256739205|gb|EEU52529.1| excinuclease ABC, C subunit [Parabacteroides sp. D13] gi|298268327|gb|EFI09982.1| excinuclease ABC subunit C [Bacteroides sp. 3_1_19] Length = 611 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 173/617 (28%), Positives = 298/617 (48%), Gaps = 46/617 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG YQ D G ++YVGKA NL++R+ SY + + +++ ++ QI +I++ V T Sbjct: 16 IPEKPGCYQYFDENGTIIYVGKAKNLKRRVSSYFNKVHDSNKTRVLVKQIRDIKYIVVDT 75 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E +ALLLE N+IK+ +PR+N+LL+DDK++P I++ P +++ R+ Y+GP+ Sbjct: 76 EEDALLLENNLIKQYRPRYNVLLKDDKTYPSIVV-KNEYFPRVFQTRNIVRDGSQYYGPY 134 Query: 126 ASVDAVEKTINSLQRTFFLRSCADS-----VFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 S+ + + L+ + LR+C + + R + CL + IKRC GPC G S E+Y Sbjct: 135 PSLFTAKVMLQMLKELYPLRTCKYPLTPESIAQGRYKVCLEYHIKRCKGPCEGLQSLEEY 194 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--- 237 + + E K+ L G + + + M + +E A +++ + + ++ + Sbjct: 195 QQNISEIKEILRGNISQISKHLYEEMQSLAAELKFEEAQKIKEKYEVIENYRSKSTVVTP 254 Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 + + +D F++ N + A + G TF K + + ++LS + + Sbjct: 255 MLHNIDVFTIIENDHSAYVNFMHIGNGAIVQAYTFEYKKRLDESKEELLSLGIIEMRNRF 314 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 ++ V T+P++G+K+K+++ + +N + +L Sbjct: 315 KSTAREIIVP----------FKLDMQLENVTFTIPQRGDKKKLLDLSEMNVKQFKVDRLK 364 Query: 358 T------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 E + ILK+ + L +P IE +DNS+I G AV VV K + Sbjct: 365 QAEKLNPEQRNTRILKEIQEALHLEKLPAHIECFDNSNIQGSDAVAACVVFKMGKPSKQE 424 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YRK+N+ V DD A M+ V+ RR+ + I+ PD++I DG Sbjct: 425 YRKYNIKT--VVGPDDYASMKEVVRRRYGRAIEER--------------SPLPDLIITDG 468 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GKGQ+ + V++ + I I +AK K E F + + + P+ + + Sbjct: 469 GKGQMEVVRSVVED-ELGLSIPIAGLAKDGKHRTS-ELLFGFPPVTVGMRLDSPLFHLLT 526 Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 R++DE HRFAIT H+ +R K S LD I GIG K LLL+ F +VK I +S E L Sbjct: 527 RIQDEVHRFAITFHKDKRSKTQTKSELDTIKGIGEKTKVLLLRHFKSVKRIKEASFEELK 586 Query: 591 SIEGISKKIACKIYNHF 607 S+ I + A + Sbjct: 587 SV--IGEAKAKALQEGL 601 >gi|306818853|ref|ZP_07452575.1| excision endonuclease subunit UvrC [Mobiluncus mulieris ATCC 35239] gi|304648539|gb|EFM45842.1| excision endonuclease subunit UvrC [Mobiluncus mulieris ATCC 35239] Length = 702 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 190/696 (27%), Positives = 307/696 (44%), Gaps = 94/696 (13%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 ++P PGVY+ D GRV+YVGKA NL+ R+ SY R M++ ++ + Sbjct: 8 KPAEIPTAPGVYRWRDAHGRVIYVGKAKNLRNRLTSYFVDPAKLHPRTAKMVATAESVSW 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V +EVEAL LE IK P+FN++ +DDKS+PY +T + P + R + Sbjct: 68 VVVGSEVEALTLEYTWIKEYDPKFNVMFKDDKSYPYFAVTLNQEFPRMGVLRSAHQRGVR 127 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP---CLLFQIKRCSGPCTGEISS 177 YFGP+ +V A+ +T + L+ F +R+C D VF CL I RCS PC G IS+ Sbjct: 128 YFGPYTAVWAIRQTSDLLETVFPVRTCTDGVFARARAAGRACLKGYIGRCSAPCIGRISA 187 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 ++ E + F+SG L + M + +E A RD+L AL + N Sbjct: 188 AEHRELANRVCDFMSGHEAGLLRDLENQMWAESKAFRFEEAAKKRDQLEALRKVLEKNAV 247 Query: 238 IYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + + D F+L ++ +Q + G+ RG + + + ++++S L Q Y Sbjct: 248 VMDTDTDADLFALAADELQVSVQVFYVRAGRIRGQRGWISTIEEDVDTSELMSLALEQIY 307 Query: 295 TDKP---------------------------CPENILLSEEAEETSLLEISFFKQYGYKV 327 P+ IL+S + + LE G KV Sbjct: 308 GQVAAKLAQSGGAQLREPSSATDVAHFDTTYIPKQILVSVIPADPASLEAWLSGLRGSKV 367 Query: 328 KITVPKQGEKRKIIEQALINA----HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIE 383 I P++G KR+ +++ +NA T++ S + L + + + R+E Sbjct: 368 TIRRPQRGMKREAVKRVELNAVDGLRLYKTRRASDLTQRNLALNELGRALGIDPPL-RVE 426 Query: 384 IYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDC-AMMRMVLERRFSQL 442 YD SH G VG MVV + KN YRKF + + + D M VL RRF +L Sbjct: 427 CYDISHTQGTFQVGSMVVFEDGAPRKNAYRKFTVRGSQGQGAADDTEAMNEVLRRRFERL 486 Query: 443 IKNEENLNFHPK-----------------------------------------------K 455 I+ E + + Sbjct: 487 IQEETPAPHEVEPAVTDRGDPAARYVGESSVAGDVGDAASRGANPNPGEGLSGDPSGEIR 546 Query: 456 QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG 515 + F PD+V++DG Q+ AA+ + V + I ++ +AK + E + V Sbjct: 547 EPKRFSYRPDLVVVDGALPQVHAARAAMDAAGVWD-IPVVGLAKRLE-----EVWTVDSD 600 Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQS 574 ++ LY +Q LRDE+HRFAIT HRK+R + S LD I G+GP +++ LL+ Sbjct: 601 FPVIFPRTSTALYLLQYLRDESHRFAITAHRKKRGQAMTRSVLDGIPGLGPAKQKALLKH 660 Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 FG+++ I R+S E ++ + G + +A ++ + +N Sbjct: 661 FGSLRQIRRASAEDISKVPGFGRILATQVVKYLQEN 696 >gi|283470356|emb|CAQ49567.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus ST398] Length = 593 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 180/613 (29%), Positives = 285/613 (46%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D +V+YVGKA L+ R++SY H + T ++ +I F VT + Sbjct: 15 VPMEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVGEIRRFEFIVTSS 73 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L R G YFGP+ Sbjct: 74 ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLLVTRTVKQGTGKYFGPY 132 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + ++T L R + R + + CL + I +C GPC ++ KY + Sbjct: 133 PNAYSAQETKKLLDRIYPYRK----CDKMPDKLCLYYHIGQCLGPCVYDVDLSKYAQMTK 188 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 E FL+G + + + + M A+ D+E A +RD + + ++ N + Sbjct: 189 EITDFLNGEDKTILKSLEERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIR 248 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K CIQ F G T + P+ Sbjct: 249 DVFGYSVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEFYTFIGQFYSLNQHILPKE 308 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358 + + ++ + + K I P +G K+++++ A NA S K Sbjct: 309 VHVPRNLDKEMIQSVVDTK-------IVQPARGPKKEMVDLAAHNAKVSLNNKFELISRD 361 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ + + P RIE +DNS+I G V MV + K YRK+ + Sbjct: 362 ESRTIKAIEELGTQMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFIDGKPDKKNYRKYKIK 420 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 VK DD MR V+ RR+S+++ PD++I+DGGKG ++ Sbjct: 421 T--VKGPDDYKSMREVVRRRYSRVLNEG--------------LPLPDLIIVDGGKGHMNG 464 Query: 479 AQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 V +L ++ I + + K K E + E + L Y + R++DE Sbjct: 465 VIDVLQNELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R+K S LD+I+GIG RK LLL+SFG++K + ++ E +I GI Sbjct: 522 HRFAITFHRQTRQKTGLKSILDDIDGIGSKRKTLLLRSFGSIKKMKEATLEDFKNI-GIP 580 Query: 597 KKIACKIYNHFHK 609 + +A ++ HK Sbjct: 581 ENVAKNLHEQLHK 593 >gi|295093831|emb|CBK82922.1| Excinuclease ABC subunit C [Coprococcus sp. ART55/1] Length = 624 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 189/622 (30%), Positives = 304/622 (48%), Gaps = 37/622 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M D ++YVGKA +L R+ Y + + +I M+S I + Sbjct: 24 ELKKLPHVPGVYLMHDSGDHIIYVGKAIDLYNRVHQYFQTGYKKSPKIQKMVSHIAWFEY 83 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V +E+EAL+LE N+IK +P +N +L DDK +PYI IT + P + Sbjct: 84 IVCGSEIEALVLECNLIKEHRPHYNTMLTDDKGYPYIRITVEEDYPRILYSHQMKRDHSK 143 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT--RPCLLFQIKRCSGPCTGEISSE 178 YFGP+ + AV+ I L++ + +RSC + R + RPCL QIK+C PC G IS E Sbjct: 144 YFGPYTNSKAVKDIIELLKKLYHIRSCNKVLPRDMSLERPCLYHQIKQCMAPCQGYISKE 203 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235 Y + V +A FL+G + ++ + + M + ++E A RD + ++ HI++ Sbjct: 204 DYNKNVQDAISFLNGNHGHVIRDLEKQMKELAEDMEFEQAAEIRDLIKSIHHIESTQRVG 263 Query: 236 DSIYNRMDCFSLYHN-KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 D+ + D ++ + N I F G+ G + + + + I+ FL+Q+Y Sbjct: 264 DTSADDRDVIAMATDLGNECVISIFFIRSGKMIGREHYHMSGVNAEAYSTIMESFLKQYY 323 Query: 295 TDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 P P+ I++ ++ E+ ++E + G +V I VP++G+K+K+++ A NA Sbjct: 324 ASTPYLPKEIIIEQQIEDYKVIEEYLSARRGSQVHIIVPQKGDKQKLLKLAKDNAFLVMN 383 Query: 354 QK----LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 Q + + + + + R+E +D SHI G +V MVV K Sbjct: 384 QDADKLKREKERTEGAANELAQLIGVSSAR-RLEAFDISHISGYHSVASMVVFENGRAKK 442 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 N YRKF L + DD A MR VL RRF+ + F +PDV+++ Sbjct: 443 NDYRKFKLRT--IDGPDDYASMREVLTRRFT----------------DERFNIYPDVLMM 484 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGG+GQ++ A VL +L + I + + K + + Sbjct: 485 DGGRGQVNIALEVLDELGL--NIPVCGMVKDDHHRTRG---LYYNNKEIDFPANTQAFNM 539 Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 I RL+DEAHRFAI HR R K+ +S LD+I GIGP R++ LL F + I +S Sbjct: 540 ITRLQDEAHRFAIEYHRSLRSKSQIHSVLDDIEGIGPARRKALLAYFKDIDKIRAASIAD 599 Query: 589 LASIEGISKKIACKIYNHFHKN 610 L +G++K A +YN FH + Sbjct: 600 LEIPQGMNKTAATAVYNFFHND 621 >gi|282882339|ref|ZP_06290967.1| excinuclease ABC, C subunit [Peptoniphilus lacrimalis 315-B] gi|281297760|gb|EFA90228.1| excinuclease ABC, C subunit [Peptoniphilus lacrimalis 315-B] Length = 619 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 196/617 (31%), Positives = 310/617 (50%), Gaps = 24/617 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 Q+P+ PGVY M + ++YVGKA +L+KR++ Y S + ++ M+S I + + + Sbjct: 10 QLPDKPGVYIMKNSTDEIIYVGKAKSLRKRVRQYFGSYGKSSAKVKSMVSHIYDFEYIIV 69 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 EVE+L+LE+N+IK P++NILLRDDK +PYI +T P + K R YFG Sbjct: 70 ENEVESLILESNLIKDNLPKYNILLRDDKQYPYIKVTTNELYPRVMKTRRILKDGAKYFG 129 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSEKYM 181 P+ V AV +I++ + F LR+C+ ++ ++ + RPCL F I +C GPC G + Y Sbjct: 130 PYPDVYAVNDSIDTFESLFPLRTCSLNMEKNMGKYRPCLNFYIGKCLGPCQGNVDENSYK 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN----DS 237 + + E FLS + + ++ M + + +YE A RDR+ L ++ Sbjct: 190 KMIDEILDFLSLKSDAILTRLEDKMKEFSYNLEYEKAAEIRDRIKNLKELREKQLISNPM 249 Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 N D +L + IQ F G+ G + L +I S F++QFY Sbjct: 250 STNDKDIIALAKGIDEVLIQIFFIRDGKIIGREHYMLNDYFNEPLEEIFSAFIKQFYNGT 309 Query: 298 P-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P+ I++ EE + +LE + KV ITVP+ G+K+++I+ NA + Sbjct: 310 SYIPKEIIIEEEPAQKEVLEEWLSTKRSNKVTITVPQIGQKKELIQMVHKNALDMINKYG 369 Query: 357 STEISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 L++ T L RIE YD S+I G +VG MVV + K+ Y Sbjct: 370 DKYAKRAKSNALALEEITDILGLDIKLNRIEAYDISNISGVESVGSMVVFEKGESKKSDY 429 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472 RKF + V +D A ++ VL RRF + I + P SF +PD++++DGG Sbjct: 430 RKFRIKT--VIGPNDYASLKEVLTRRFLRGINERIDKEKGPS----SFSRFPDMIMMDGG 483 Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532 KGQ++ A VLK+L V I +I + K + + + L++ I + Sbjct: 484 KGQVNIALDVLKELGV--NIVVIGLVKDDFHTTRG---IIYNNKEYSLDLDSKGYKMIYK 538 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +++EAHRFAI HR R K S LD+I IG RK LL+ F ++ I ++S + L Sbjct: 539 IQEEAHRFAINYHRSLRNKDMFKSELDDIPLIGEKRKNNLLKHFKSLDKIKKASVDELKE 598 Query: 592 IEGISKKIACKIYNHFH 608 + G+ + A +YNHF+ Sbjct: 599 VSGMDIRSAESLYNHFN 615 >gi|57650256|ref|YP_186020.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus COL] gi|151221270|ref|YP_001332092.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus str. Newman] gi|161353528|ref|YP_499646.2| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus NCTC 8325] gi|161509321|ref|YP_001574980.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|162138564|ref|YP_493743.2| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|221140456|ref|ZP_03564949.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253731759|ref|ZP_04865924.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|258451843|ref|ZP_05699864.1| excinuclease ABC, C subunit [Staphylococcus aureus A5948] gi|262048727|ref|ZP_06021609.1| excinuclease ABC subunit C [Staphylococcus aureus D30] gi|262051666|ref|ZP_06023885.1| excinuclease ABC subunit C [Staphylococcus aureus 930918-3] gi|282919923|ref|ZP_06327652.1| excinuclease ABC, C subunit [Staphylococcus aureus A9765] gi|284024071|ref|ZP_06378469.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus 132] gi|294848137|ref|ZP_06788884.1| excinuclease ABC [Staphylococcus aureus A9754] gi|304381297|ref|ZP_07363950.1| excision endonuclease subunit UvrC [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|71153397|sp|Q5HGT7|UVRC_STAAC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|119367842|sp|Q2FHT5|UVRC_STAA3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|119367843|sp|Q2FZD0|UVRC_STAA8 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|189038121|sp|A6QG48|UVRC_STAAE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|189038122|sp|A8Z1S8|UVRC_STAAT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|57284442|gb|AAW36536.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus COL] gi|150374070|dbj|BAF67330.1| uvr ABC system protein, C subunit [Staphylococcus aureus subsp. aureus str. Newman] gi|160368130|gb|ABX29101.1| excinuclease ABC subunit UvrC [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724488|gb|EES93217.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257860451|gb|EEV83278.1| excinuclease ABC, C subunit [Staphylococcus aureus A5948] gi|259160401|gb|EEW45426.1| excinuclease ABC subunit C [Staphylococcus aureus 930918-3] gi|259163183|gb|EEW47743.1| excinuclease ABC subunit C [Staphylococcus aureus D30] gi|269940640|emb|CBI49019.1| putative excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus TW20] gi|282594639|gb|EFB99623.1| excinuclease ABC, C subunit [Staphylococcus aureus A9765] gi|294824937|gb|EFG41359.1| excinuclease ABC [Staphylococcus aureus A9754] gi|302750969|gb|ADL65146.1| glycosyl transferase, group 2 family protein [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340280|gb|EFM06221.1| excision endonuclease subunit UvrC [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196870|gb|EFU27213.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus CGS01] gi|320141039|gb|EFW32886.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus MRSA131] gi|320143096|gb|EFW34886.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus MRSA177] gi|329313814|gb|AEB88227.1| UvrABC system protein C [Staphylococcus aureus subsp. aureus T0131] gi|329730733|gb|EGG67112.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus 21189] Length = 593 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 180/613 (29%), Positives = 284/613 (46%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D +V+YVGKA L+ R++SY H + T ++ +I F VT + Sbjct: 15 VPMEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVGEIRRFEFIVTSS 73 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L R G YFGP+ Sbjct: 74 ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLLVTRTVKQGTGKYFGPY 132 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + ++T L R + R + + CL + I +C GPC ++ KY + Sbjct: 133 PNAYSAQETKKLLDRIYPYRK----CDKMPDKLCLYYHIGQCLGPCVYDVDLSKYAQMTK 188 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 E FL+G + + + + M A+ D+E A +RD + + ++ N + Sbjct: 189 EITDFLNGEDKTILKSLEERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIR 248 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K CIQ F G T + P+ Sbjct: 249 DVFGYSVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEFYTFIGQFYSLNQHILPKE 308 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358 + + ++ + + K I P +G K+ +++ A NA S K Sbjct: 309 VHVPRNLDKEMIQSVVDTK-------IVQPARGPKKDMVDLAAHNAKVSLNNKFELISRD 361 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ + + P RIE +DNS+I G V MV + K YRK+ + Sbjct: 362 ESRTIKAIEELGTQMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPDKKNYRKYKIK 420 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 VK DD MR V+ RR+S+++ PD++I+DGGKG ++ Sbjct: 421 T--VKGPDDYKSMREVVRRRYSRVLNEG--------------LPLPDLIIVDGGKGHMNG 464 Query: 479 AQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 V +L ++ I + + K K E + E + L Y + R++DE Sbjct: 465 VIDVLQNELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R+K S LD+I+GIG RK LLL+SFG++K + ++ E +I GI Sbjct: 522 HRFAITFHRQTRQKTGLKSILDDIDGIGNKRKTLLLRSFGSIKKMKEATLEDFKNI-GIP 580 Query: 597 KKIACKIYNHFHK 609 + +A ++ HK Sbjct: 581 ENVAKNLHEQLHK 593 >gi|86134938|ref|ZP_01053520.1| excinuclease ABC, C subunit [Polaribacter sp. MED152] gi|85821801|gb|EAQ42948.1| excinuclease ABC, C subunit [Polaribacter sp. MED152] Length = 601 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 177/624 (28%), Positives = 296/624 (47%), Gaps = 52/624 (8%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + +P PGVYQ D +++YVGKA NL+KR+ SY + + + ++ IN ++ Sbjct: 7 LQIKTLPSSPGVYQYFDKEEKLIYVGKAKNLKKRVSSYFTKTHDSGKTRVLVKNINTVKH 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE +ALLLE N+IK+ KP++N+LL+DDK++P+I I K + P ++ R Sbjct: 67 IVVNTETDALLLENNLIKKYKPKYNVLLKDDKTYPWICI-KKERFPRVFMTRRVIKDGSE 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-----HRTRPCLLFQIKRCSGPCTGEI 175 Y+GP+ SV ++ + ++ + LR+C + R + + CL + + C GPC Sbjct: 126 YYGPYTSVRTIKALLELIKELYTLRTCKYDLSREKINTGKYKVCLEYHLGNCLGPCEALE 185 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 + Y + E + + G E++ M K ++E A +++L LS+ Q + Sbjct: 186 TEAHYNNSIKEIRNIIKGNFKESLERLNTLMMGFAEKMEFEKAQRIKEKLDRLSNYQAKS 245 Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 N +D FS+ +K G + T +K E ++ ++L F+ + Sbjct: 246 TIVNPTINNVDVFSIISDKTHGYANFIKISNGSIIQSHTTEIKKKLEESDKELLELFIFE 305 Query: 293 FYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 I + + VK+T+PK G+K++I+E + NA Sbjct: 306 IRQRYNSTSPEIYVPFQVNIGE------------NVKVTIPKVGDKKRIVELSERNAKYY 353 Query: 352 HTQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405 ++L + + I+ L P+ IE +DNS+I G + V VV + Sbjct: 354 KLEQLKQIKIVDPDRHVKRIMAQMKADLRLKEEPRHIECFDNSNIQGTNPVAACVVFRDG 413 Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465 K +YR +N+ V DD A M V+ RR+ +L+ E+L P Sbjct: 414 KPSKKEYRHYNIKT--VVGPDDFASMEEVVFRRYKRLLSEGESL--------------PQ 457 Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525 ++I+DGGKGQLS+A L+ L + +I II IAK + E ++ L L+ + Sbjct: 458 LIIIDGGKGQLSSAVKSLEILGLRGKIAIIGIAKRLE-----EIYYPDDPIPLYLDKKSE 512 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 L Q LR+EAHRF IT HR +R K+ S L+ I +G LL+ F + K + + Sbjct: 513 TLKITQFLRNEAHRFGITFHRNKRSKSAIQSELESIPDVGKQTITTLLRKFKSAKRVKEA 572 Query: 585 SPETLASIEGISKKIACKIYNHFH 608 S + L ++ I A K+YN +H Sbjct: 573 SLDELKAV--IGNARALKVYNFYH 594 >gi|329728762|gb|EGG65183.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus 21193] Length = 593 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 180/613 (29%), Positives = 284/613 (46%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D +V+YVGKA L+ R++SY H + T ++ +I F VT + Sbjct: 15 VPMEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVGEIRRFEFIVTSS 73 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L R G YFGP+ Sbjct: 74 ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLQVTRTVKQGTGKYFGPY 132 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + ++T L R + R + + CL + I +C GPC ++ KY + Sbjct: 133 PNAYSAQETKKLLDRIYPYRK----CDKMPDKLCLYYHIGQCLGPCVYDVDLSKYAQMTK 188 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 E FL+G + + + + M A+ D+E A +RD + + ++ N + Sbjct: 189 EITDFLNGEDKTILKSLEERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIR 248 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K CIQ F G T + P+ Sbjct: 249 DVFGYSVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEFYTFIGQFYSLNQHILPKE 308 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358 + + ++ + + K I P +G K+ +++ A NA S K Sbjct: 309 VHVPRNLDKEMIQSVVDTK-------IVQPARGPKKDMVDLAAHNAKVSLNNKFELISRD 361 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ + + P RIE +DNS+I G V MV + K YRK+ + Sbjct: 362 ESRTIKAIEELGTQMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPDKKNYRKYKIK 420 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 VK DD MR V+ RR+S+++ PD++I+DGGKG ++ Sbjct: 421 T--VKGPDDYKSMREVVRRRYSRVLNEG--------------LPLPDLIIVDGGKGHMNG 464 Query: 479 AQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 V +L ++ I + + K K E + E + L Y + R++DE Sbjct: 465 VIDVLQNELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R+K S LD+I+GIG RK LLL+SFG++K + ++ E +I GI Sbjct: 522 HRFAITFHRQTRQKTGLKSILDDIDGIGNKRKTLLLRSFGSIKKMKEATLEDFKNI-GIP 580 Query: 597 KKIACKIYNHFHK 609 + +A ++ HK Sbjct: 581 ENVAKNLHEQLHK 593 >gi|282916395|ref|ZP_06324157.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus D139] gi|282319835|gb|EFB50183.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus D139] Length = 593 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 180/613 (29%), Positives = 286/613 (46%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D +V+YVGKA L+ R++SY H + T ++ +I + F VT + Sbjct: 15 VPMEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVGEIRHFEFIVTSS 73 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L R G YFGP+ Sbjct: 74 ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLLVTRTVKQGTGKYFGPY 132 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + ++T L R + R + + CL + I +C GPC ++ KY + Sbjct: 133 PNAYSAQETKKLLDRIYPYRK----CDKMPDKLCLYYHIGQCLGPCVYDVDLSKYAQMTK 188 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 E FL+G + + + + M A+ D+E A +RD + + ++ N + Sbjct: 189 EITDFLNGEDKTILKSLEERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIR 248 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K CIQ F G T + P+ Sbjct: 249 DVFGYSVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEFYTFIGQFYSLNQHILPKE 308 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358 + + ++ + + K I P +G K+++++ A NA S K Sbjct: 309 VHVPRNLDKEMIQSVVDTK-------IVQPARGPKKEMVDLAAHNAKVSLNNKFELISRD 361 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ + + P RIE +DNS+I G V MV + K YRK+ + Sbjct: 362 ESRTIKAIEELGTQMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFIDGKPDKKNYRKYKIK 420 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 VK DD MR V+ RR+S+++ PD++I+DGGKG ++ Sbjct: 421 T--VKGPDDYKSMREVVRRRYSRVLNEG--------------LPLPDLIIVDGGKGHMNG 464 Query: 479 AQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 V +L ++ I + + K K E + E + L Y + R++DE Sbjct: 465 VIDVLQNELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R+K S LD+I+GIG RK LLL+SFG++K + ++ E +I GI Sbjct: 522 HRFAITFHRQTRQKTGLKSILDDIDGIGSKRKTLLLRSFGSIKKMKEATLEDFKNI-GIP 580 Query: 597 KKIACKIYNHFHK 609 + +A ++ HK Sbjct: 581 ENVAKNLHEQLHK 593 >gi|167752742|ref|ZP_02424869.1| hypothetical protein ALIPUT_01003 [Alistipes putredinis DSM 17216] gi|167659811|gb|EDS03941.1| hypothetical protein ALIPUT_01003 [Alistipes putredinis DSM 17216] Length = 605 Score = 471 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 190/620 (30%), Positives = 304/620 (49%), Gaps = 51/620 (8%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVTC 64 +P PGVYQ LD G ++YVGKA +L+KR+ SY + H+ ++ ++ QI IR V Sbjct: 16 LPLSPGVYQFLDKNGAIIYVGKAKSLRKRVSSYFMQNKEHSAKVQVLVRQIAAIRHIVVD 75 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE ++IK L+PR+NILL+DDK++P+I++ + P + R + YFGP Sbjct: 76 TETDALLLENSLIKTLQPRYNILLKDDKTYPWIVV-RREPFPRVQSTRILNRDGSQYFGP 134 Query: 125 FASVDAVEKTINSLQRTFFLRSCADS-----VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 + SV + ++ LR+C+ + + + R CL + + C GPC G S E+ Sbjct: 135 YGSVMMQRSILEFIREVIPLRTCSLNLSPAAIAKGRYSVCLQYHLGNCKGPCVGAQSEEE 194 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237 Y V L G ++ + + M A +E A ++ RL AL + + + Sbjct: 195 YDALVDMTVSILKGDLRPVRTYLEKEMEAAARNLKFEVAQRYKTRLDALDNYSSKSVIVS 254 Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ--FY 294 +D FSL + ++A G G T L T ++ AQ+L+ ++ Sbjct: 255 ARIVDVDVFSLLVDDDVAYCNFLRIRHGSVVGVYTIRLTTGIDTDPAQMLTLAIQHIAET 314 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 + +++ L + V TVPK+GEK ++E +L +A + Sbjct: 315 IAGTLAKEVIVPYLPSAAQLFD---------GVTFTVPKRGEKLDLLEFSLKSARIYRAE 365 Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 +L E + ++ K+ L P+ IE +DNS++ G + V VV + Sbjct: 366 QLKNLEIKNPERHTERLMAAMQKELHLDRPPRHIECFDNSNLQGTNPVASCVVFRDGKPS 425 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 + +YR FN+ V DD A MR ++ RR+S+LI L PD++I Sbjct: 426 RKEYRHFNIKT--VIGADDFASMREIVFRRYSRLIAEGAEL--------------PDLII 469 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 +DGGKGQLS+A VL +L +E ++ I+ +AK + E FF L+ L Sbjct: 470 VDGGKGQLSSAYAVLCELGIEKQVPIVGLAKRIE-----EIFFPGDPMPYYLSRTGEPLK 524 Query: 529 FIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 + +RDEAHRF IT HR++R K +S L+ I G+GP LLL+ F TV+ I + E Sbjct: 525 VVCHIRDEAHRFGITFHRQKRSKGFIHSELENIEGVGPKTIELLLRHFRTVEKIRTAPAE 584 Query: 588 TLASIEGISKKIACKIYNHF 607 L+++ G A ++ HF Sbjct: 585 ELSALVG--PAKAARLLVHF 602 >gi|189464896|ref|ZP_03013681.1| hypothetical protein BACINT_01240 [Bacteroides intestinalis DSM 17393] gi|189437170|gb|EDV06155.1| hypothetical protein BACINT_01240 [Bacteroides intestinalis DSM 17393] Length = 611 Score = 471 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 175/625 (28%), Positives = 310/625 (49%), Gaps = 49/625 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PG+YQ L+ G ++YVGKA NL++R+ SY + + + ++S+I +IR+ V Sbjct: 19 NLPESPGIYQYLNTEGVIIYVGKAKNLKRRVSSYFNKEHEPGKTRVLVSKIADIRYIVVN 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE N+IK+ +PR+N+LL+DDK++P I + + P ++K R SY+GP Sbjct: 79 TEEDALLLENNLIKKYRPRYNVLLKDDKTYPSICVQN-EYFPRVFKTRKIIRNGSSYYGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + ++ ++ ++ + LR+C +++ + CL + IK C+GPC G+ S + Sbjct: 138 YSHIPSMNALLDLIKHLYPLRTCSLNLSPENINAGKFNVCLEYHIKNCAGPCIGKQSLDD 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y++ + E K+ L G ++ + + M + +E A +++ + + + ++ + Sbjct: 198 YLKNIGEIKEILKGNTQEIQRHLFQQMQELATDMKFEEAQKVKEKYMLIENYRAKSEVVS 257 Query: 240 NRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 N + ++ + A + G TF K T ++L + + Sbjct: 258 NILHNIDVFSIEEDSDEKSAFVNYLHITNGAINQAFTFEYKKRLNETKEELLELGIIEMR 317 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 ++ + L V T+P++G+K+K+++ +++N + Sbjct: 318 ERYKSLSREIIVPFEVDMEL----------KDVVFTIPQRGDKKKLLDLSILNVKQYKAD 367 Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 ++ E + ++K+ + L +P +IE +DNS+I G V VV + Sbjct: 368 RMKQAEKLNPEQRNVRLMKEIQDELHLDRLPMQIECFDNSNIQGSDPVAACVVFKKAKPS 427 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 K YRK+N+ V DD A M+ V++RR+ + I+ PD++I Sbjct: 428 KQDYRKYNIKT--VVGADDYASMKEVVKRRYQRAIEEN--------------APLPDLLI 471 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 DGGKGQ+SA + VL +LN+ I I +AK K E + + + L P+ Sbjct: 472 TDGGKGQMSAVKEVLDELNL--NIPIAGLAKDGKHRTS-ELLYGFPPQTIGLKQNTPLFR 528 Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 + +++DE HRFAIT HR +R K S LDEI GIG K LL+ F +VK I +S E Sbjct: 529 LLTQIQDEVHRFAITFHRDKRSKRQIASELDEIKGIGEKTKAALLKEFKSVKRIKEASLE 588 Query: 588 TLASIEGISKKIACKIYNHFHKNTS 612 LA + G + A I +F + TS Sbjct: 589 ALAKVTG--EAKAKVIKEYFRQATS 611 >gi|21282758|ref|NP_645846.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus MW2] gi|49485984|ref|YP_043205.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus MSSA476] gi|297208216|ref|ZP_06924646.1| excision endonuclease subunit UvrC [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912293|ref|ZP_07129736.1| excision endonuclease subunit UvrC [Staphylococcus aureus subsp. aureus TCH70] gi|24212605|sp|Q8NX55|UVRC_STAAW RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|56749719|sp|Q6GA68|UVRC_STAAS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|21204196|dbj|BAB94894.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus MW2] gi|49244427|emb|CAG42855.1| putative excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus MSSA476] gi|296886955|gb|EFH25858.1| excision endonuclease subunit UvrC [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886539|gb|EFK81741.1| excision endonuclease subunit UvrC [Staphylococcus aureus subsp. aureus TCH70] Length = 593 Score = 471 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 180/613 (29%), Positives = 284/613 (46%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D +V+YVGKA L+ R++SY H + T ++ +I F VT + Sbjct: 15 VPMEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVGEIRRFEFIVTSS 73 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L R G YFGP+ Sbjct: 74 ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLLVTRTVKQGTGKYFGPY 132 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + ++T L R + R + + CL + I +C GPC ++ KY + Sbjct: 133 PNAYSAQETKKLLDRIYPYRK----CDKMPDKLCLYYHIGQCLGPCVYDVDLSKYAQMTK 188 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 E FL+G + + + + M A+ D+E A +RD + + ++ N + Sbjct: 189 EITDFLNGEDKTILKSLEERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIR 248 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K CIQ F G T + P+ Sbjct: 249 DVFGYSVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEFYTFIGQFYSLNQHILPKE 308 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358 + + ++ + + K I P +G K+ +++ A NA S K Sbjct: 309 VHVPRNLDKEMIQSVVDTK-------IVQPARGPKKDMVDLAAHNAKVSLNNKFELISRD 361 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ + + P RIE +DNS+I G V MV + K YRK+ + Sbjct: 362 ESRTIKAIEELGTQMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFIDGKPDKKNYRKYKIK 420 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 VK DD MR V+ RR+S+++ PD++I+DGGKG ++ Sbjct: 421 T--VKGPDDYKSMREVVRRRYSRVLNEG--------------LPLPDLIIVDGGKGHMNG 464 Query: 479 AQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 V +L ++ I + + K K E + E + L Y + R++DE Sbjct: 465 VIDVLQNELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R+K S LD+I+GIG RK LLL+SFG++K + ++ E +I GI Sbjct: 522 HRFAITFHRQTRQKTGLKSILDDIDGIGNKRKTLLLRSFGSIKKMKEATLEDFKNI-GIP 580 Query: 597 KKIACKIYNHFHK 609 + +A ++ HK Sbjct: 581 ENVAKNLHEQLHK 593 >gi|258423811|ref|ZP_05686697.1| excinuclease ABC, C subunit [Staphylococcus aureus A9635] gi|257846043|gb|EEV70071.1| excinuclease ABC, C subunit [Staphylococcus aureus A9635] Length = 593 Score = 471 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 179/613 (29%), Positives = 286/613 (46%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D +V+YVGKA L+ R++SY H + T ++ +I + F VT + Sbjct: 15 VPMEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVGEIRHFEFIVTSS 73 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L R G YFGP+ Sbjct: 74 ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLLVTRTVKQGTGKYFGPY 132 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + ++T L R + R + + CL + I +C GPC ++ KY + Sbjct: 133 PNAYSAQETKKLLDRIYPYRK----CDKMPDKLCLYYHIGQCLGPCVYDVDLSKYAQMTK 188 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 E FL+G + + + + M A+ D+E A +RD + + ++ N + Sbjct: 189 EITDFLNGEDKTILKSLEERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIR 248 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K CIQ F G T + P+ Sbjct: 249 DVFGYSVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEFYTFIGQFYSLNQHILPKE 308 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358 + + ++ + + K I P +G K+++++ A NA S K Sbjct: 309 VHVPRNLDKEMIQSVVDTK-------IVQPARGPKKEMVDLAAHNAKVSLNNKFELISRD 361 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ + + P RIE +DNS+I G V MV + K YRK+ + Sbjct: 362 ESRTIKAIEELGTQMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFIDGKPDKKNYRKYKIK 420 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 VK DD MR V+ RR+S+++ PD++I+DGGKG ++ Sbjct: 421 T--VKGPDDYKSMREVVRRRYSRVLNEG--------------LPLPDLIIVDGGKGHMNG 464 Query: 479 AQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 V +L ++ I + + K K E + E + L Y + R++DE Sbjct: 465 VIDVLQNELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R+K S LD+I+GIG RK LLL+SFG++K + ++ E ++ GI Sbjct: 522 HRFAITFHRQTRQKTGLKSILDDIDGIGSKRKTLLLRSFGSIKKMKEATLEDFKNL-GIP 580 Query: 597 KKIACKIYNHFHK 609 + +A ++ HK Sbjct: 581 ENVAKNLHEQLHK 593 >gi|126662636|ref|ZP_01733635.1| excinuclease ABC, C subunit [Flavobacteria bacterium BAL38] gi|126626015|gb|EAZ96704.1| excinuclease ABC, C subunit [Flavobacteria bacterium BAL38] Length = 605 Score = 471 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 181/623 (29%), Positives = 304/623 (48%), Gaps = 46/623 (7%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + +P+ PGVYQ D G++LYVGKA NL+KR++SY N+ ++ + ++ +I I+ Sbjct: 7 LQIQTLPDNPGVYQYYDKEGKILYVGKAKNLKKRVQSYFTKNHDNYKTSVLVKKIVTIKH 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE +ALLLE N+IK+L+PR+N+LLRDDK++P+I I + P ++ R Sbjct: 67 IVVPTETDALLLENNLIKKLQPRYNVLLRDDKTYPWICI-KNERFPRIFSTRKMIKDGSE 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-----HRTRPCLLFQIKRCSGPCTGEI 175 YFGP+ S V ++ ++ + LR+C + + + + CL + I C GPC Sbjct: 126 YFGPYTSFKTVHTILDLIKELYPLRTCNYDLSKPNIDFGKFKVCLEYHIGNCKGPCEDYE 185 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 S+E Y V + ++ L G + R M ++ +E A ++++ L + Q+ + Sbjct: 186 SAENYQNQVEKIRQILKGNFKESLKDFKRLMTDLAMEMKFEEAQKIKEKIEVLENYQSRS 245 Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 + +D FS+ ++ +A + G + T LK + TN ++L + + Sbjct: 246 TILNPKISNLDVFSIISDETMAYVNFLQISHGAIVRSHTLELKKKLDETNEELLELAVVE 305 Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 ++ I +K+TVP+ G+K++I+E + NA Sbjct: 306 LRERFHLNAREIVVPFP-------IDLGDPEVSGIKVTVPQLGDKKQILELSERNAKYYR 358 Query: 353 TQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 +L E I+ K L P+ IE +DNS+I G + V VV + Sbjct: 359 LDQLKQIQIVDPERHTNRIMAQMQKDLRLSVEPRHIECFDNSNIQGTNPVAACVVFKDGK 418 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 K YR FN+ V+ +D A M V+ RR+ +++ + L P + Sbjct: 419 PSKKDYRHFNIKT--VEGPNDFASMEEVVYRRYKRMLDENQPL--------------PQL 462 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526 +I+DGGKGQLS+A + L + +I II IAK + E F+ L L+ + Sbjct: 463 IIIDGGKGQLSSALKSIDDLGLRGKIAIIGIAKRLE-----ELFYPGDSAPLYLDKKSET 517 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 L IQ LR+EAHRF IT HR +R K+ + L+ I GIG L++ F +VK + + Sbjct: 518 LKVIQFLRNEAHRFGITHHRDKRSKSALTNSLESIPGIGEKTMITLMKHFKSVKRLQIAD 577 Query: 586 PETLASIEGISKKIACKIYNHFH 608 + ++ + G+SK A KI + + Sbjct: 578 EKAISEVVGLSK--AKKISDFYK 598 >gi|224369428|ref|YP_002603592.1| excinuclease ABC subunit C [Desulfobacterium autotrophicum HRM2] gi|259710337|sp|C0QET6|UVRC_DESAH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|223692145|gb|ACN15428.1| UvrC [Desulfobacterium autotrophicum HRM2] Length = 606 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 201/612 (32%), Positives = 307/612 (50%), Gaps = 28/612 (4%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTV 62 + P+ PGVY M D G ++YVGKA NL+KR+ SY H + ++ ++ + V Sbjct: 10 QSAPQNPGVYLMKDKRGTIIYVGKALNLKKRLASYFARETGHDMKTGVLLKKVVDFDLIV 69 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EAL+LE+ +IK+ PR+N++L+D KS+P + I PAL R YF Sbjct: 70 TATEHEALILESTLIKKHSPRYNVILKDGKSYPCLRIDTSKPFPALEVVRKIGDDNAVYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP++SV +V TI + + F LR C D F +RTRPCL +QI C G C +S ++Y Sbjct: 130 GPYSSVQSVRSTIKQVNKIFKLRKCRDVQFANRTRPCLNYQINACLGACCNRVSRQEYAR 189 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--- 239 V + FL G +L ++ M E +E A RD + A+ + Sbjct: 190 VVGDVILFLKGRAPDLINRLKFEMQTEADLEHFERAAQIRDTILAIQTTLERQVVVSTDR 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK-P 298 D + N A + F G G+ + T S +IL F+R +Y Sbjct: 250 TDRDVIACAINGEKAVVTILFVRSGNLVGSRNYPFDTGL-SGVPEILDAFVRHYYERSLF 308 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P IL++E+ E L++ ++ G +V + VP++G+KR+++E AL+NA + + LS Sbjct: 309 IPGQILIAEKIENHGLVQDLLIEKRGKRVSLVVPERGDKRRLVEMALVNAQKELEKNLSI 368 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + L + P+RIE +DNS++ G V MVV + K++YRKF + Sbjct: 369 QNEAWETLTALQTILGMSVYPRRIECFDNSNMAGTDPVSSMVVFVDGLACKSEYRKFIIR 428 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 K DD A M VL RR S + PD++++DGGKGQLS Sbjct: 429 DA--KENDDYACMTEVLTRRLS-----------------STEAPLPDLLVVDGGKGQLSM 469 Query: 479 AQGVLKKLNVENRITIISIAKGPKR--SAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 A VLK L +ENR + +AK + + + + + LY +QRLRDE Sbjct: 470 AVAVLKSLGLENRFQVAGLAKKDAKLGEVYDKIYLPGRANPVNTRGALKALYLVQRLRDE 529 Query: 537 AHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 AHRFAIT RKRR K A S LD + GIG RK++L+ ++ + + +++ E LAS+ G+ Sbjct: 530 AHRFAITFQRKRRSKRAGTSVLDAVPGIGKKRKQVLMTTYKGISRMGQATVEELASLPGM 589 Query: 596 SKKIACKIYNHF 607 + A ++ + Sbjct: 590 TLAAAQQVKSAL 601 >gi|224536938|ref|ZP_03677477.1| hypothetical protein BACCELL_01814 [Bacteroides cellulosilyticus DSM 14838] gi|224521425|gb|EEF90530.1| hypothetical protein BACCELL_01814 [Bacteroides cellulosilyticus DSM 14838] Length = 608 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 174/621 (28%), Positives = 308/621 (49%), Gaps = 49/621 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P+ PG+YQ L+ G ++YVGKA NL++R+ SY + + + ++S+I +IR+ V Sbjct: 19 NLPDSPGIYQYLNTEGVIIYVGKAKNLKRRVSSYFNKEHEPGKTRVLVSKIADIRYIVVN 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E +ALLLE N+IK+ KPR+N+LL+DDK++P I + + P ++K R SY+GP Sbjct: 79 SEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRIFKTRKIIRNGSSYYGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ V ++ ++ ++ + LR+C +++ + CL + IK C+GPC G+ S + Sbjct: 138 YSHVPSMNALLDLIKHLYPLRTCNLNLSPENIRAGKFNVCLEYHIKNCAGPCVGKQSLDD 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 YM+ + E K+ L G ++ + + M + + +E A + R + + + ++ + Sbjct: 198 YMKNIGEIKEILKGNTQEIQRMLFQQMQELAAEMKFEEAQKVKSRYMLIENYRAKSEVVS 257 Query: 240 NRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 N + ++ + A I G TF K T +++ + + Sbjct: 258 NVLHNIDVFSIEEDSDGKSAFINYLHITNGAINQAFTFEYKKRLNETKEELIQLGIIEMR 317 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 ++ + L V T+P++G+K+K+++ +++N + Sbjct: 318 ERYKSLSREIIVPFEVDMEL----------KDVIFTIPQRGDKKKLLDLSILNVKQYKAD 367 Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 ++ E ++K+ ++ L H+P +IE +DNS+I G V VV + Sbjct: 368 RMKQAEKLNPEQRSVRLMKEIQEELHLEHLPIQIECFDNSNIQGSDPVAACVVFKKAKPS 427 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 K YRK+N+ V DD A M+ V+ RR+ + I+ + + PD++I Sbjct: 428 KQDYRKYNIKT--VVGADDYASMKEVVRRRYQRAIEEK--------------ATLPDLLI 471 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 DGGKGQ+ A + VL +LN+ I I +AK K E + + + L P+ Sbjct: 472 TDGGKGQMGAVKEVLDELNL--NIPIAGLAKDGKHRTS-ELLYGFPPQTIGLKQNTPLFR 528 Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 + +++DE HRFAIT HR++R K S LDEI GIG K LL+ F +VK I +S E Sbjct: 529 LLTQIQDEVHRFAITFHREKRSKRQIASELDEIKGIGEKTKAALLKEFKSVKRIKEASLE 588 Query: 588 TLASIEGISKKIACKIYNHFH 608 L + I + A I +F Sbjct: 589 ALTKV--IGEAKAKVIEEYFR 607 >gi|119367854|sp|Q3AXU8|UVRC_SYNS9 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C Length = 661 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 189/632 (29%), Positives = 303/632 (47%), Gaps = 29/632 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFT 61 + +P PG Y M D R+LYVGK+ L+ R++SY S + + RI M Q+ I F Sbjct: 21 LKDIPAEPGCYLMRDGDDRILYVGKSKTLRSRVRSYFRSRHDLSPRIRLMTRQVCEIEFI 80 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ--G 119 VT +E EAL LE+N+IK +P FN+LL+DDK +PY+ IT P ++ R Sbjct: 81 VTDSEAEALALESNLIKNHQPHFNVLLKDDKKYPYLCITWSESYPRIFITRRRRFRSPLD 140 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++GP+ V + +T+ ++R F LR + + RT CL + I RC G C +ISS+ Sbjct: 141 RFYGPYVDVGLLRRTLFLVKRVFPLRQRPRPLHQDRT--CLNYSIGRCPGVCQEKISSDD 198 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + + + G + L+ + M++ + DYESA RD+L L + Sbjct: 199 YHQTLRKVAMVFQGRSDELQNLLQEQMHKYADRTDYESAARVRDQLQGLDQLTADQKMSL 258 Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D +L ++ LA +Q G+ G + + + IL + + Y+ Sbjct: 259 PDSSVSRDVLALACDERLAAVQLFQMRAGKLVGRLGYTAD-AAGLSPGLILQRVIEEHYS 317 Query: 296 DKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 P +L+ + SLLE +Q KV+I P++ +K +IE NA Sbjct: 318 QVDAVEVPPQLLVQHPLPQQSLLEEWLTEQRERKVQIHCPQRRQKADLIELVQRNAEFEL 377 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + + +D + LP P+RIE YD SHI G AV VV + K Y Sbjct: 378 LRAKQGQEQQALSTEDLAQLLDLPLPPRRIEGYDISHIQGSDAVASQVVFIDGLPAKQHY 437 Query: 413 RKFNLHPNDV---KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE-------YSFPS 462 RK+ + + + + D AM ++ R + L+ +Q+ Sbjct: 438 RKYKIQSSSIRAGHSDDFMAMAEIMRRRFRRWARAKADGLDLGALRQKGGSALQTDGLND 497 Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522 WPD+V++DGGKGQLSA L++LN+ + + + S+AK + E F + + L Sbjct: 498 WPDLVMIDGGKGQLSAVMEALRELNLHDDLNVCSLAKQRE-----EVFLPGESQPLESEA 552 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMI 581 + ++RLRDEAHRFA++ HR++R + S L +I G+G R R LL F ++ I Sbjct: 553 DQLGVALLRRLRDEAHRFAVSFHRQQRGERMKRSRLSDIPGLGAKRVRDLLSHFHSIDAI 612 Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 +S +TL+ G+ +A I+N FH + Sbjct: 613 QLASVDTLSKAPGVGPVLAQDIFNFFHPTDEN 644 >gi|124515718|gb|EAY57227.1| Excinuclease ABC, C subunit (UvrC) [Leptospirillum rubarum] Length = 629 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 183/624 (29%), Positives = 299/624 (47%), Gaps = 34/624 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVT 63 +PE PGVY M G VLYVGK+ +L+ R++SY + RI ++S++ ++ T Sbjct: 23 TLPEEPGVYLMKSETGEVLYVGKSRSLKDRVRSYFQETRVRSTRIALLVSRVRDLEIIRT 82 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE++AL+LE +IKR +PR+N+LLRDDK++PY+ + P L R YFG Sbjct: 83 KTELDALILENTLIKRYRPRYNVLLRDDKTYPYLKFSWNDTYPRLTVTRRVRNDGSLYFG 142 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEKYME 182 P+ + A++ T+ ++RTF L +C + + RPC+ +QIKRC GPC +++E Sbjct: 143 PYPNPSAMKDTLRLIRRTFPLATCTIPLDKPTLERPCVEYQIKRCLGPCVEGLTTETEYR 202 Query: 183 FVHEAKK-FLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---I 238 V + FL G +++L + M ++E A RDR + + + Sbjct: 203 QVAMGVRLFLQGKSNDLLYLLENEMKARAKNLEFEKAAAVRDRYRNVLQVLEKHTVSFPF 262 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 ++ +D L + A + G G LK E+++ ++L FL QFY + Sbjct: 263 HHPIDGLYLARSGTTAVMLVMHIRNGLLIGKEEVELKNTEEASDEELLVAFLEQFYGKES 322 Query: 299 --CPENILLSEEAEETSLL--EISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P ILL E L+ K+ V+I PK+G+K+ I++ NA + Sbjct: 323 AFLPGEILLPVSLPEEDLMTLSWMSEKKGEDPVRIISPKRGDKKMILDLVRENAEEALNA 382 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + ++ +L + P+ + D S+ V +V + K+ YRK Sbjct: 383 REKRSLNSTEVLDEARSLLKRDRPPRLLCCVDISNTGDLLPVASLVTFQDGKPEKSLYRK 442 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + K QDD M+ V+ER++ PD++++DGG Sbjct: 443 FRIR--YEKGQDDFKMLSEVMERQYR-------------------ENPLPDLLVIDGGPL 481 Query: 475 QLSAAQGVLKKLNVEN-RITIISIAKGPKRSAGME-KFFVKKGEALVLNMRDPILYFIQR 532 QL A L+++ ++ R ++S+AK E FF + L+L P+ + + R Sbjct: 482 QLDACVRTLEEMGHDDARRRVVSLAKERTNKNKSERIFFPGQDTPLILPGHHPVTHLLVR 541 Query: 533 LRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 LRDEAHRFAI HR R++ +S L I G+GP R++ LLQSFG+VK + ++ E + Sbjct: 542 LRDEAHRFAIKYHRTLREEYLTHSRLLHIPGVGPAREKKLLQSFGSVKNLMEATIEEIVQ 601 Query: 592 IEGISKKIACKIYNHFHKNTSHTP 615 G+S +A IY+ P Sbjct: 602 NAGLSVALATSIYHSLRDKQDAPP 625 >gi|298207519|ref|YP_003715698.1| excinuclease ABC, C subunit [Croceibacter atlanticus HTCC2559] gi|83850155|gb|EAP88023.1| excinuclease ABC, C subunit [Croceibacter atlanticus HTCC2559] Length = 598 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 181/626 (28%), Positives = 304/626 (48%), Gaps = 52/626 (8%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + +P PGVYQ D ++LYVGKA NL+KR+ SY + +HRI M+ +I NI+ Sbjct: 8 IQVKTLPSSPGVYQYFDKDDKILYVGKAKNLKKRVNSYFTKKHDSHRIGVMVKKIKNIKH 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V +E +ALLLE N+IK+LKPRFN++LRDDK++P++ I K + P ++ R Sbjct: 68 IVVNSETDALLLENNLIKKLKPRFNVMLRDDKTYPWLCI-KKERFPRVFPTRRVIKDGSE 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175 Y+GPF S+ V ++ ++ + LR+C + + + + CL + + C GPC G Sbjct: 127 YYGPFTSMKTVHTLLDLIKGLYQLRTCKYDLAEEKIDAGKYKVCLEYHLGNCQGPCEGYQ 186 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 + E+Y + ++ + G + K M + ++E A ++++ L Q+ + Sbjct: 187 TEEEYHSNIDHIRQIVKGNFKDSLIKFKDQMKGHAERMEFEDAQRIKEKIQVLEKYQSKS 246 Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 N +D FS+ ++ + G + T LK + + ++L + + Sbjct: 247 TVVNPKINNVDVFSIVSDEGFGYVNFLQLSHGSIIRSHTIELKKKLDEGDQELLELGIIE 306 Query: 293 FYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 + I + E +K+TVPK G+K+ I++ + NA Sbjct: 307 IRQRFNSQSKEIYVPMHVEVGE------------DLKVTVPKLGDKKSIVDLSTRNAKYF 354 Query: 352 HTQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405 ++ + + I+ + L P+ IE +DNS+I G + V VV + Sbjct: 355 RQERFKQMKIVDPDRHVKRIMAQMKEDLRLNEEPRHIECFDNSNIQGTNPVAACVVFKDG 414 Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465 K++YRKFN+ V+ DD A M V+ RR+ +L+ ++ L P Sbjct: 415 KPSKSEYRKFNIKT--VEGPDDFASMEEVVFRRYRRLLNEDQPL--------------PQ 458 Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525 ++I+DGGKGQLS+A L L + +I I+ IAK + E F+ L L+ + Sbjct: 459 LIIIDGGKGQLSSAVKALDDLGLRGKIAIVGIAKRLE-----EIFYPTDKYPLYLDKKSE 513 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 L IQ LR+EAHRF IT HR++R A + L+ I GIG LL+ F ++ I + Sbjct: 514 SLKIIQHLRNEAHRFGITFHRQKRSSAALGTELENITGIGEKTAVELLKHFRSISKIKSA 573 Query: 585 SPETLASIEGISKKIACKIYNHFHKN 610 E L + G++K A +Y ++K Sbjct: 574 KREDLEQVVGVAK--ASLVYEFYNKE 597 >gi|224023516|ref|ZP_03641882.1| hypothetical protein BACCOPRO_00218 [Bacteroides coprophilus DSM 18228] gi|224016738|gb|EEF74750.1| hypothetical protein BACCOPRO_00218 [Bacteroides coprophilus DSM 18228] Length = 606 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 173/620 (27%), Positives = 316/620 (50%), Gaps = 48/620 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PG+YQ LD G ++YVGKA NL++R+ SY + + + ++++I +IR+ V Sbjct: 19 NLPETPGIYQYLDSEGTIIYVGKAKNLKRRVYSYFAKEHESRKTRVLVTRIADIRYIVVN 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE N+IK+ +PR+N+LL+DDKS+P I +++ P ++K R +YFGP Sbjct: 79 TEEDALLLENNLIKKYRPRYNVLLKDDKSYPSICVSN-EYFPRVFKTRKLIRDGSTYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ V ++ + ++R + LR+C +++ + + CL + IK C GPC G S ++ Sbjct: 138 YSHVPSMMAMLELIKRLYPLRTCNLALTPENITAGKFKVCLEYHIKNCKGPCIGAQSHDE 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237 YM+ + E ++ L G ++ + M + + +E A +++ + + ++ ++ Sbjct: 198 YMKSIAEIREILKGNTQSISNALMEEMQKLAEELRFEEAQKVKEKYELIENYRSKSEVVS 257 Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + + +D FS+ +++ A I G TF K + ++L + + Sbjct: 258 SVIHNIDVFSIETDESSAYINYLHITNGCVNQAFTFEYKMRVNESKEELLQLGIVEMRER 317 Query: 297 KPC-PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + I++ E + V TVP++G+K+ ++E +L+N + + Sbjct: 318 YQSQSKEIIVPFELDMEM-----------NGVTFTVPQRGDKKHLLELSLLNVKQYKVDR 366 Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 L E ++K+ + L +P IE +DNS+I G AV VV + K Sbjct: 367 LKQAEKLNPEQRSARLMKEIQTQLGLDRLPVHIECFDNSNIQGSDAVAACVVFRKTKPSK 426 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 +YRK+N+ V DD A M+ V+ RR++++++ + L PDV++ Sbjct: 427 KEYRKYNIKT--VTGPDDYASMQEVVRRRYTRILEEQGEL--------------PDVILT 470 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ+ + V++ + I I+ +AK R E F + + P+ + Sbjct: 471 DGGKGQMEVVRQVIED-ELHLNIPIVGLAK-DNRHRTSEVLFGFPPLTIGIKQGTPLFHL 528 Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 +++++DE HRFAIT HR +R K+ S LD I GIG RK LL++F +V I ++S + Sbjct: 529 LEQIQDEVHRFAITFHRDKRSKSQVASALDSIKGIGEKRKSDLLRTFKSVARIRKASLQE 588 Query: 589 LASIEGISKKIACKIYNHFH 608 +A++ I + A + Sbjct: 589 IAAV--IGEAAAINVKEALK 606 >gi|289551049|ref|YP_003471953.1| Excinuclease ABC subunit C [Staphylococcus lugdunensis HKU09-01] gi|289180581|gb|ADC87826.1| Excinuclease ABC subunit C [Staphylococcus lugdunensis HKU09-01] Length = 592 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 171/613 (27%), Positives = 291/613 (47%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D +V+YVGKA L+ R++SY H + T ++ +I + + VT + Sbjct: 14 VPIEPGCYLMKDRQQQVIYVGKAKRLRNRLRSYFTGA-HDAKTTRLVGEIRDFEYIVTSS 72 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L R G YFGP+ Sbjct: 73 ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLLVTRTVKKGTGKYFGPY 131 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + ++T L R + R C + CL + I +C GPC ++ ++Y + Sbjct: 132 PNAYSAQETKKLLDRIYPFRKCDTMP----DKLCLYYHIGQCLGPCVYDVDQQQYAQMTK 187 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E FL+G + + + + + M A+ K D+E A +RD + + ++ + + Sbjct: 188 EISDFLNGEDKTILQNLEQRMMAASEKLDFERAKEYRDLIQHIHNLTKKQKIMSSDNTIR 247 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F + +K C+Q F G + P+ Sbjct: 248 DVFGYHVSKGWMCVQVFFIRQGNMIQRDATMIPIQQTEEEEFYTFIGQFYSLNQHILPKE 307 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358 + + + + + + K I P +G K+++++ A NA + K Sbjct: 308 VHIPKHLDAKLIHSVVDTK-------IVQPARGAKKEMVDLANHNAEVALDNKFELIARD 360 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ ++ + P RIE +DNS+I G V MV + K YRK+ + Sbjct: 361 ESRTVKAIEELGERMGI-QSPIRIEAFDNSNIQGVDPVSAMVSFVDGKPDKRGYRKYKIK 419 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++++ PD++I+DGGKG +S Sbjct: 420 T--VEGPDDYKSMREVVRRRYTRVLNEG--------------LPLPDLIIVDGGKGHMSG 463 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 + VL+ +L ++ I I + K K E + + E + + Y +QR++DE Sbjct: 464 VKDVLENELGLD--IPIAGLRKNDKHQTS-ELLYGPEAEVVPMKKNSQAFYLLQRIQDEV 520 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R+K S LD ++GIG RK LL++FG++K + ++ L + G+ Sbjct: 521 HRFAITFHRQTRQKQGMRSILDTVDGIGSKRKTKLLRTFGSIKKMKEATLPELQN-CGLP 579 Query: 597 KKIACKIYNHFHK 609 +K+A + + Sbjct: 580 EKVAKSLKEALNN 592 >gi|317474646|ref|ZP_07933920.1| excinuclease ABC [Bacteroides eggerthii 1_2_48FAA] gi|316909327|gb|EFV31007.1| excinuclease ABC [Bacteroides eggerthii 1_2_48FAA] Length = 606 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 181/620 (29%), Positives = 308/620 (49%), Gaps = 49/620 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PGVYQ L+ G ++YVGKA NL++R+ SY + + + ++S+I +IR+ V Sbjct: 16 NLPESPGVYQYLNTEGTIIYVGKAKNLKRRVSSYFNREHEPGKTRVLVSKIADIRYIVVN 75 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + + P ++K R SY+GP Sbjct: 76 TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRVFKTRRVIRNGSSYYGP 134 Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + ++ ++ ++ + LR+C +++ + CL + IK C+GPC G+ S E+ Sbjct: 135 YSHIPSMYALLDLIKHLYPLRTCNLNLSPENIRAGKFNVCLEYHIKNCAGPCVGKQSQEE 194 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y+ + E K+ L G + + R M + +E A +++ L + ++ ++ + Sbjct: 195 YLNNIAEIKEILKGNTQEVGRMLYRQMQDLAAEMKFEEAQKIKEKYLLLENYRSKSEVVS 254 Query: 240 NRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 N + ++ + A I G TF K T ++LS + + Sbjct: 255 NILHNIDVFSIEEDTDEKSAFINYLHITNGAINQAFTFEYKKRLNETKEELLSLGIIEMR 314 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 ++ + L V T+P++G+K+K++E +++N + Sbjct: 315 ERYKSLSREIIVPFELDMEL----------KDVVFTIPQRGDKKKLLELSILNVKQYKAD 364 Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 +L E +LK+ + L +P RIE +DNS+I G V VV + Sbjct: 365 RLKQTEKLNPEQRTVRLLKEIQGELHLDRLPMRIECFDNSNIQGSDPVAACVVFIKGKPS 424 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 K YRK+N+ V+ DD A M+ V++RR+ + I+ PD++I Sbjct: 425 KKDYRKYNIKT--VEGPDDYASMKEVVKRRYQRAIEEN--------------SPLPDLLI 468 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 DGGKGQ+SA + ++ +LN++ I I +AK K E + + + L P+ Sbjct: 469 TDGGKGQMSAVKEIIDELNLD--IPIAGLAKDGKHRTS-ELLYGFPPQTIGLKQNSPLFR 525 Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 + +++DE HRFAIT HR +R K S LDEI GIG K LL+ F +VK I +S E Sbjct: 526 LLTQIQDEVHRFAITFHRDKRSKRQVASALDEIKGIGEKTKNTLLKEFKSVKRIKEASTE 585 Query: 588 TLASIEGISKKIACKIYNHF 607 + + G + A I HF Sbjct: 586 DIIKVVG--EAKAKIIKEHF 603 >gi|312865325|ref|ZP_07725553.1| excinuclease ABC, C subunit [Streptococcus downei F0415] gi|311099436|gb|EFQ57652.1| excinuclease ABC, C subunit [Streptococcus downei F0415] Length = 598 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 168/620 (27%), Positives = 296/620 (47%), Gaps = 43/620 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D G ++YVGKA NL+ R++SY H ++ T + ++S+I + + Sbjct: 8 KLELLPDSPGCYIHKDKNGTIIYVGKAKNLKNRVRSYFHGSHDT-KTEMLVSEIADFEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + EALLLE N+I++ P++NI L+DDKS+PYI IT+ P L R G Y Sbjct: 67 VTGSNTEALLLEINLIQKNMPKYNIRLKDDKSYPYIKITN-EVYPRLMITRQVHRKDGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ A + L R F + C + + C + + +C+ + Sbjct: 126 FGPYPDSGAATEIKRLLDRIFPFKKCTNP----ANKVCFYYHLGQCNAHTICHTDQTYWD 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + K FL+G ++ + E+I + M +A+ ++E A +RD L A+S ++ + Sbjct: 182 GLKEDVKNFLNGKDNKIVEQIRQKMLKASELMEFERAAEYRDLLEAISKLRTKQRIMNQD 241 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 M D F Y +K C+Q F G+ +E + + Sbjct: 242 MQDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNIFPYYNEPEEDFLTYLGQFYQESKHF 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ + + ++ ++ + K P++GEK++++ A NA + Sbjct: 302 LPKEVFIPQDIDDQLAKAVVKTKVLK-------PQRGEKKQLVNLATKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + +++ + +P RIE +DNS+I G S V MVV + K YRK Sbjct: 355 LEKDIKKTKGAIENLGQLLNIPAPR-RIEAFDNSNIQGTSPVAAMVVFVDGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + V DD A MR V+ RR+S+++++ + PD++++DGG+G Sbjct: 414 FKIKT--VIGPDDYASMREVIYRRYSRVMRDG--------------LTPPDLIVIDGGQG 457 Query: 475 QLSAAQG-VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 Q++ A+ + +L ++ I I + K K E F + E + L + +QR+ Sbjct: 458 QVNIAKDVIQNRLGLD--IPIAGLQKNDKHQT-HELLFGEPLEVVDLPRNSQEFFLLQRV 514 Query: 534 RDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 +DE HRFAIT HR+ R K ++S LD + G+GP RK+LLL+ F ++ I ++ + + + Sbjct: 515 QDEVHRFAITFHRQVRSKNSFSSKLDGVPGLGPKRKQLLLKHFRSLTKIQQADVDDIVN- 573 Query: 593 EGISKKIACKIYNHFHKNTS 612 G+ + +A + + + Sbjct: 574 CGVPRNVAEDLKARLSEMEN 593 >gi|315658545|ref|ZP_07911417.1| excision endonuclease subunit UvrC [Staphylococcus lugdunensis M23590] gi|315496874|gb|EFU85197.1| excision endonuclease subunit UvrC [Staphylococcus lugdunensis M23590] Length = 592 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 172/613 (28%), Positives = 291/613 (47%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D +V+YVGKA L+ R++SY H + T ++ +I + + VT + Sbjct: 14 VPIEPGCYLMKDRQQQVIYVGKAKRLRNRLRSYFTGA-HDAKTTRLVGEIRDFEYIVTSS 72 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L R G YFGP+ Sbjct: 73 ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLLVTRTVKKGTGKYFGPY 131 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + ++T L R + R C + CL + I +C GPC ++ ++Y + Sbjct: 132 PNAYSAQETKKLLDRIYPFRKCDTMP----DKLCLYYHIGQCLGPCVYDVDQQQYAQMTK 187 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E FL+G + + + + + M A+ K D+E A +RD L + ++ + + Sbjct: 188 EISDFLNGEDKTILQNLEQRMMAASEKLDFERAKEYRDLLQHIHNLTKKQKIMSSDNTIR 247 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F + +K C+Q F G + P+ Sbjct: 248 DVFGYHVSKGWMCVQVFFIRQGNMIQRDATMIPIQQTEEEEFYTFIGQFYSLNQHILPKE 307 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358 + + + + + + K I P +G K+++++ A NA + K Sbjct: 308 VHIPKHLDAKLIHSVVDTK-------IVQPARGAKKEMVDLANHNAEVALDNKFELIARD 360 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ ++ + P RIE +DNS+I G V MV + K YRK+ + Sbjct: 361 ESRTVKAIEELGERMGI-QSPIRIEAFDNSNIQGVDPVSAMVSFVDGKPDKRGYRKYKIK 419 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++++ PD++I+DGGKG +S Sbjct: 420 T--VEGPDDYKSMREVVRRRYTRVLNEG--------------LPLPDLIIVDGGKGHMSG 463 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 + VL+ +L ++ I I + K K E + + E + + Y +QR++DE Sbjct: 464 VKDVLENELGID--IPIAGLRKNDKHQTS-ELLYGPEAEVVPMKKNSQAFYLLQRIQDEV 520 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R+K S LD ++GIG RK LL++FG++K + ++ L + G+ Sbjct: 521 HRFAITFHRQTRQKQGMRSILDTVDGIGSKRKTKLLRTFGSIKKMKEATLPELQN-CGLP 579 Query: 597 KKIACKIYNHFHK 609 +K+A + + Sbjct: 580 EKVAKSLKEALNN 592 >gi|239636358|ref|ZP_04677360.1| excinuclease ABC subunit C [Staphylococcus warneri L37603] gi|239597713|gb|EEQ80208.1| excinuclease ABC subunit C [Staphylococcus warneri L37603] Length = 594 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 177/613 (28%), Positives = 286/613 (46%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D +V+YVGKA L+ R++SY H + T ++S+I N F VT + Sbjct: 15 VPLEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVSEIRNFEFIVTSS 73 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L R G YFGP+ Sbjct: 74 ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKHPRLIVTRTVKKGTGKYFGPY 132 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + ++T L R + R + + CL + I +C GPC ++ +KY + Sbjct: 133 PNAYSAQETKKLLDRIYPFRK----CDKMPDKLCLYYHIGQCMGPCVYDVDLDKYAQMTK 188 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E FL G + + + M +A+ D+E A +RD + + ++ + Sbjct: 189 EISDFLHGEDKTILNHLQERMEKASESLDFERAKEYRDLIQHIHNLTKKQKIMSTDNTIR 248 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K CIQ F G T + P+ Sbjct: 249 DVFGYSVSKGWMCIQVFFIRQGNMIKRDTTMIPIQQTEEEEFYTFIGQFYSLNQHILPKE 308 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358 + + + ++ + + K I P +G K+++I+ A NA S K Sbjct: 309 VHVPKHLDKDIIQSVVDTK-------IVQPSRGAKKEMIDLANHNAEVSLNNKFELIARD 361 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ ++ + P RIE +DNS+I G V MV + K YRK+ + Sbjct: 362 ESRTIKAIEELGERMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPEKKGYRKYKIK 420 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++++ PD++I+DGGKG ++ Sbjct: 421 T--VEGPDDYKSMREVVRRRYTRVLNEG--------------TPLPDLIIVDGGKGHMNG 464 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 VL+ +L ++ I + + K K E + E + L Y + R++DE Sbjct: 465 VMDVLENELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R+K S LD+I+GIG RK LL++FG++K + +S E L G+ Sbjct: 522 HRFAITFHRQTRQKTGLKSVLDDIDGIGAKRKTKLLRTFGSIKKMKEASLEDLKK-SGLP 580 Query: 597 KKIACKIYNHFHK 609 + +A + + Sbjct: 581 ENVAKNLQHALQN 593 >gi|218131737|ref|ZP_03460541.1| hypothetical protein BACEGG_03358 [Bacteroides eggerthii DSM 20697] gi|217986040|gb|EEC52379.1| hypothetical protein BACEGG_03358 [Bacteroides eggerthii DSM 20697] Length = 606 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 181/620 (29%), Positives = 308/620 (49%), Gaps = 49/620 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PGVYQ L+ G ++YVGKA NL++R+ SY + + + ++S+I +IR+ V Sbjct: 16 NLPESPGVYQYLNTEGTIIYVGKAKNLKRRVSSYFNREHEPGKTRVLVSKIADIRYIVVN 75 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + + P ++K R SY+GP Sbjct: 76 TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRVFKTRRVIRNGSSYYGP 134 Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + ++ ++ ++ + LR+C +++ + CL + IK C+GPC G+ S E+ Sbjct: 135 YSHIPSMYALLDLIKHLYPLRTCNLNLSPENIRTGKFNVCLEYHIKNCAGPCVGKQSQEE 194 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y+ + E K+ L G + + R M + +E A +++ L + ++ ++ + Sbjct: 195 YLNNIAEIKEILKGNTQEVGRMLYRQMQDLAAEMKFEEAQKIKEKYLLLENYRSKSEVVS 254 Query: 240 NRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 N + ++ + A I G TF K T ++LS + + Sbjct: 255 NILHNIDVFSIEEDTDEKSAFINYLHITNGAINQAFTFEYKKRLNETKEELLSLGIIEMR 314 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 ++ + L V T+P++G+K+K++E +++N + Sbjct: 315 ERYKSLSREIIVPFELDMEL----------KDVVFTIPQRGDKKKLLELSILNVKQYKAD 364 Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 +L E +LK+ + L +P RIE +DNS+I G V VV + Sbjct: 365 RLKQTEKLNPEQRTVRLLKEIQGELHLDRLPMRIECFDNSNIQGSDPVAACVVFIKGKPS 424 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 K YRK+N+ V+ DD A M+ V++RR+ + I+ PD++I Sbjct: 425 KKDYRKYNIKT--VEGPDDYASMKEVVKRRYQRAIEEN--------------SPLPDLLI 468 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 DGGKGQ+SA + ++ +LN++ I I +AK K E + + + L P+ Sbjct: 469 TDGGKGQMSAVKEIIDELNLD--IPIAGLAKDGKHRTS-ELLYGFPPQTIGLKQNSPLFR 525 Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 + +++DE HRFAIT HR +R K S LDEI GIG K LL+ F +VK I +S E Sbjct: 526 LLTQIQDEVHRFAITFHRDKRSKRQVASALDEIKGIGEKTKNTLLKEFKSVKRIKEASTE 585 Query: 588 TLASIEGISKKIACKIYNHF 607 + + G + A I HF Sbjct: 586 DIIKVVG--EAKAKIIKEHF 603 >gi|261867897|ref|YP_003255819.1| excinuclease ABC subunit C [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413229|gb|ACX82600.1| excinuclease ABC, C subunit [Aggregatibacter actinomycetemcomitans D11S-1] Length = 609 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 206/617 (33%), Positives = 339/617 (54%), Gaps = 32/617 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+M D V+YVGKA +L+KR+ SY + + +++ I +I T+T Sbjct: 11 NVPHLPGVYRMYDDKSTVIYVGKAKDLKKRLSSYFRKQLSSKKTEALVASIQHIETTITT 70 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N IK +PR+N+LLRDDKS+PYIL+T K P + +R S IQG YFGP Sbjct: 71 SETEALLLEHNYIKTYQPRYNVLLRDDKSYPYILLT-KETHPRITAYRGSKKIQGEYFGP 129 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183 + + AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RC PC ++ E Y + Sbjct: 130 YPNAGAVRETLSLLQKLFPIRQCENSVYNNRSRPCLQYQIGRCLAPCVKGYVTDEAYAQQ 189 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD 243 V+ A+ FL G + + + + + M QA+ + ++E A RD++ A+ + +R D Sbjct: 190 VNFARLFLQGKDQQVLDHLVKQMEQASQQLNFEEAARIRDQIQAVRAVIEKQFVANDRHD 249 Query: 244 C---FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296 ++ + +AC+Q F G+ G ++F K S + A++ F+ QFY Sbjct: 250 DIDIIAIAYQLGVACVQVLFIRQGKILGNRSYFPKVPSNTNLAELTETFVGQFYLQAHQG 309 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 + P I++ ++ +E LE Q G KV I +G+K K ++ A +NA + KL Sbjct: 310 RTIPNTIIVDQKLDEKVDLETLLSDQAGRKVSIQDHAKGDKSKYLQLAQMNAKAALVTKL 369 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + ++ I R+E +D SH MG + VV ++G +K+ YR+FN Sbjct: 370 KQSTLQHDRYVALQELLSIAAIK-RMECFDISHTMGEQTIASCVVFNQDGPLKSDYRRFN 428 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + + DD A M L +R+ + +++++ PD++ +DGGKGQL Sbjct: 429 I--SGITKGDDYAAMEQALLKRYDKDLEDDK---------------IPDIIFIDGGKGQL 471 Query: 477 SAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQR 532 + A V + LNV +NR +I +AKG R AG+E + K + L L+ L+ I+ Sbjct: 472 NRALQVFENLNVKWNKNRPHLIGVAKGVDRRAGLETLILSKWDKELHLSADSLALHLIRH 531 Query: 533 LRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDE+H AI+ H K+R++ S L+ I G+G R++ LL+ G ++ + ++ + +AS Sbjct: 532 IRDESHNHAISGHCKKRQQHFTQSGLESIEGVGAKRRQALLKYLGGLQGVKNATLDEIAS 591 Query: 592 IEGISKKIACKIYNHFH 608 + GISK +A KI+ Sbjct: 592 VPGISKALAEKIFETLQ 608 >gi|322435991|ref|YP_004218203.1| excinuclease ABC, C subunit [Acidobacterium sp. MP5ACTX9] gi|321163718|gb|ADW69423.1| excinuclease ABC, C subunit [Acidobacterium sp. MP5ACTX9] Length = 662 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 188/676 (27%), Positives = 322/676 (47%), Gaps = 85/676 (12%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH--RITHMISQINNIR 59 +P PG Y + G V+YVGKA NL+ R++SY N + + ++ + ++ Sbjct: 6 KIRTLPTSPGCYLYKNAEGEVIYVGKAKNLRSRVRSYFLEANQRNNQKTGSLMREAVDVD 65 Query: 60 FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG 119 + E EAL LE N+IK+ KPRFNILLRDDK++PYI IT + P ++ R G Sbjct: 66 YITVDNEREALALENNLIKQRKPRFNILLRDDKTYPYIKITLTDRHPKVFVTRRLRKDGG 125 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSE 178 +YFGP+ + + ++ + R+F + SC + R+ R CL + IKRC GPC ++ E Sbjct: 126 AYFGPYFPGNLAHRLVDLIHRSFLIPSCKVDLNRYHPRACLQYYIKRCLGPCVEGLVTPE 185 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y + + + + FL G L++++ M +A +E A RD+L +S +Q+ Sbjct: 186 TYKDTIRDVQLFLDGRTDELEKRLTARMAEAAENMQFELAARLRDQLVTVSQMQDKQRIA 245 Query: 239 YNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSES--------------- 280 D F ++ + + G+ FF + + Sbjct: 246 TTDNEDADVFGFHYENQMLAVNLFHMRGGKIVDRRDFFWEDLPDLAGHFGESLNEGEETE 305 Query: 281 ---------------------------------TNAQILSYFLRQFYTDKP-CPENILLS 306 + A S L+Q Y D+ P +I + Sbjct: 306 AALEPDTRRSAPEIEEDSTSVQQTPVAELGAVFSPAAFFSALLKQLYLDQSYVPRSIYVP 365 Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366 + + LL ++ +++++ P++G+KR +++ NA +S+ Q+ + ++ Sbjct: 366 VDFPDRVLLADLLSERAHHRIELAAPQRGDKRSLVDLVCQNAKQSYDQRFRVLQPTKKLI 425 Query: 367 KD-FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 D LP PKRIE +D SHI G V MVV + K+ YRKF + V Sbjct: 426 ADTLQDILNLPETPKRIECFDISHIQGSETVASMVVWEDGVMKKSDYRKFQIKT--VSGN 483 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD A MR V++RR+ +L+ ++ +P V+++DGG GQLSAA L++ Sbjct: 484 DDFASMREVIQRRYKRLLDEKK--------------PFPSVILIDGGLGQLSAAYAALEE 529 Query: 486 LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545 + V + + SIAK + ++ E +VL+ R P+L+ +Q++RDE+HRFA+ H Sbjct: 530 IGVTLQ-PLASIAKKEEIIY----VHGQEDEPVVLDRRSPVLHMVQKIRDESHRFAVGYH 584 Query: 546 RKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIA 600 RKRR+ + + LD I G+GP ++ L++ FG+++ I + + E L ++ +++ A Sbjct: 585 RKRRQIRDRETELDPIPGVGPRTRQRLIEHFGSIRAIKQ-TAEQNPDALTAV--VNQATA 641 Query: 601 CKIYNHFHKNTSHTPT 616 KI +F + T Sbjct: 642 EKIRRYFFPTPAEPET 657 >gi|332653474|ref|ZP_08419219.1| excinuclease ABC subunit C [Ruminococcaceae bacterium D16] gi|332518620|gb|EGJ48223.1| excinuclease ABC subunit C [Ruminococcaceae bacterium D16] Length = 609 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 176/619 (28%), Positives = 296/619 (47%), Gaps = 28/619 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 + +P PGVY M D+ V+YVGKA L+ R+ Y + +HT + M+SQI++ Sbjct: 9 KAHALPLKPGVYIMQDVHSTVIYVGKAKALKNRVSQYFQDSASHTEKTRAMVSQIDHFDV 68 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 + +E EAL+LE ++IKR +PR+NILL+DDK +PYI ++ K + P + Sbjct: 69 IIADSEFEALVLENSLIKRHQPRYNILLKDDKGYPYIRLS-KEEYPRFSLANRVAEDGAR 127 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+AS + ++ +++L+ L +C R + RPCL F + +C G C E++ E Sbjct: 128 YFGPYASRHSTQQIVDALRTALRLPTCRRQFPRDIGKERPCLNFHMGKCDGYCRREMTKE 187 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + + +A L G +K + M QA + +E A RDR+ A+ + + Sbjct: 188 RYDQAIAQAVSLLEGKFKEVKADLTAQMEQAAEELRFEKAAQIRDRIKAIQLLGERQKVV 247 Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D + + +C + G+ ++ E +ILS LRQ+Y Sbjct: 248 AGSLADTDVTGFFRGEAKSCFVVLHYLDGELAAKDMDLMERPMEEETGEILSALLRQYYA 307 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 + P ILL E ++ L +Q G +V++ P++G K +I+ A NA T+ Sbjct: 308 GRSRLPRQILLPCELDDQVPLTRMLSEQAGRRVELITPQRGAKMDLIKLANQNAVEEVTR 367 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + E +L+ K L P+R E YD S+ V MVV +K YR+ Sbjct: 368 ATTREERQNKLLEALGKMLGLEQAPRRTESYDISNTGADDMVASMVVFENGRPLKRDYRR 427 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + + DD A M VL RRF + + +E F + PD++++DGG+ Sbjct: 428 FKIKD--LTGPDDYASMEQVLTRRFQRYLDGDE-----------KFGTLPDLMLIDGGEN 474 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 + A+ VL ++ I + K + G + + + I +++ Sbjct: 475 HVKIARRVLDDFGLD--IPAFGMVKDDRHRTRA--LVAPDGREIGIQAIPAVFALIGQIQ 530 Query: 535 DEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 +E HRFAI +R++RK + S LD+I G+G R+ LL++F +VK I ++ E L + Sbjct: 531 EETHRFAIEFNRQQRKGRVQGSVLDQIPGVGEKRRAQLLKAFKSVKAIRQAPLEELEKV- 589 Query: 594 GISKKIACKIYNHFHKNTS 612 + K A +Y F + + Sbjct: 590 -VPKNTAQAVYQFFRREET 607 >gi|227875543|ref|ZP_03993683.1| excinuclease ABC subunit C [Mobiluncus mulieris ATCC 35243] gi|227843879|gb|EEJ54048.1| excinuclease ABC subunit C [Mobiluncus mulieris ATCC 35243] Length = 702 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 190/696 (27%), Positives = 308/696 (44%), Gaps = 94/696 (13%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 ++P PGVY+ D GRV+YVGKA NL+ R+ SY R M++ ++ + Sbjct: 8 KPAEIPTAPGVYRWRDAHGRVIYVGKAKNLRNRLTSYFVDPAKLHPRTAKMVATAESVSW 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V +EVEAL LE IK P+FN++ +DDKS+PY +T + P + R + Sbjct: 68 VVVGSEVEALTLEYTWIKEYDPKFNVMFKDDKSYPYFAVTLNQEFPRMGVLRSAHQRGVR 127 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP---CLLFQIKRCSGPCTGEISS 177 YFGP+ +V A+ +T + L+ F +R+C D VF CL I RCS PC G IS+ Sbjct: 128 YFGPYTAVWAIRQTSDLLETVFPVRTCTDGVFARARAAGRACLKGYIGRCSAPCIGRISA 187 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 ++ E + F+SG L + M + +E A RD+L AL + N Sbjct: 188 AEHRELANRVCDFMSGHEAGLLRDLENQMWAESKAFRFEEAAKKRDQLEALRKVLEKNAV 247 Query: 238 IYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + + D F+L ++ +Q + G+ RG + + + ++++S+ L Q Y Sbjct: 248 VMDTDTDADLFALAADELQVSVQVFYVRAGRIRGQRGWISTIEEDVDTSELMSFALEQIY 307 Query: 295 TDKP---------------------------CPENILLSEEAEETSLLEISFFKQYGYKV 327 P+ IL+S + + LE G KV Sbjct: 308 GQVAAKLAQSGGAQLREPSSATDVAHFDTTYIPKQILVSVIPADPASLEAWLSGLRGSKV 367 Query: 328 KITVPKQGEKRKIIEQALINA----HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIE 383 I P++G KR+ +E+ +NA T++ S + L + + + R+E Sbjct: 368 TIRRPQRGMKREAVERVELNAVDGLRLYKTRRASDLTQRNLALNELGRALGIDPPL-RVE 426 Query: 384 IYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDC-AMMRMVLERRFSQL 442 YD SH G VG MVV + KN YRKF + + + D M VL RRF +L Sbjct: 427 CYDISHTQGTFQVGSMVVFEDGAPRKNAYRKFTVRGSQGQGAADDTEAMNEVLRRRFERL 486 Query: 443 IKNEENLNFHPK-----------------------------------------------K 455 I+ E + + Sbjct: 487 IQEETPAPHEVEPAVTDRGDPAARYVGESSVAGDVGDAASRGANPNPGEGLSGDPSGEIR 546 Query: 456 QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG 515 + F PD+V++DG Q+ AA+ + V + I ++ +AK + E + V Sbjct: 547 EPKRFSYRPDLVVVDGALPQVHAARAAMDAAGVWD-IPVVGLAKRLE-----EVWTVDSD 600 Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQS 574 ++ LY +Q LRDE+HRFAIT HRK+R + S LD I G+G ++++ LL+ Sbjct: 601 FPVIFPRTSTALYLLQYLRDESHRFAITAHRKKRGQAMTRSVLDGIPGLGSVKQKALLKH 660 Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 FG+++ I R+S E ++ + G + +A ++ + +N Sbjct: 661 FGSLRQIRRASAEDISKVPGFGRILATQVVKYLQEN 696 >gi|262198238|ref|YP_003269447.1| excinuclease ABC, C subunit [Haliangium ochraceum DSM 14365] gi|262081585|gb|ACY17554.1| excinuclease ABC, C subunit [Haliangium ochraceum DSM 14365] Length = 689 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 198/632 (31%), Positives = 308/632 (48%), Gaps = 36/632 (5%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH---RITHMISQINNIRF 60 E++P PGVY M D +GRV+YVGKA NL+ R++ Y + + +I Sbjct: 15 ERIPTAPGVYLMKDRSGRVVYVGKAKNLRTRVRQYFRPGADARFFVAAGLLARVLADIDT 74 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V E EALLLE ++IK+ +PRFNI LRDDK + + I P + R+ Q Sbjct: 75 VVVDNEKEALLLENHLIKKHQPRFNINLRDDKQYLVLRIDPNADYPRVEVVRNIRDDQAR 134 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGP+ S + +T+ L R F LR+C D V R RTRPCL +QIKRC GPC + + Y Sbjct: 135 YFGPYHSATSCRETLRLLNRHFQLRTCTDHVLRTRTRPCLQYQIKRCPGPCVYPVERDAY 194 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--- 237 E V + FL+G N L ++ M+ +E++E+A RD + A+ + Sbjct: 195 AEQVDDVMMFLAGKNDQLVTRLRERMSSYAEREEFEAAARLRDSIQAVDKTLARQNVVQE 254 Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 + D F ++ ++ I F G+ G + + + ++ + + T Sbjct: 255 QFLDQDVFGMWREGDVVEIAVLFIRNGKLVGRRSLRQGDQAFPDGQVLANFVQQYYATGT 314 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P+ I++ E ++ +++ G KVKI P++ + +++ A NA S + + Sbjct: 315 LVPDEIVVGVELDDEAVIAEWLAGLRGKKVKILHPQRSTRARLLALAEKNAAASAASRQN 374 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + + L+ + L +P+RIE +D +HI G V MVV + ++ YRKF + Sbjct: 375 RDRDAEDTLRKLQARLGLKRLPRRIECFDIAHIQGSVTVASMVVFVDGVAERSLYRKFKV 434 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQ---------------LIKNEENLNFHPKKQEYSFPS 462 T DD A M VL RRF + + E + S Sbjct: 435 KS---VTNDDFAAMYEVLSRRFRRALAAQAEAEATAEADGVGEGEGEGADGTGKTGSSWE 491 Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNV----ENRITIISIAKGPKRSAGME-----KFFVK 513 PD++++DGGKGQL A L L + E +I +AK +R E + Sbjct: 492 MPDLLVVDGGKGQLGQALTALADLGIKITAEKGFDVIGLAK--EREISGEALPDRVYLRN 549 Query: 514 KGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLL 572 + EA+ L LY + R+RDEAHRFA T HR+RR + A S LD+I GIG R+R LL Sbjct: 550 RKEAVRLRPNTAELYLLSRVRDEAHRFANTFHRERRNRTALRSSLDDIPGIGAKRRRALL 609 Query: 573 QSFGTVKMISRSSPETLASIEGISKKIACKIY 604 + G++K I ++S E L+++ G+ +K A +Y Sbjct: 610 RELGSLKAIKQASLEELSAVSGMGRKAAEAVY 641 >gi|284928621|ref|YP_003421143.1| Excinuclease ABC subunit C [cyanobacterium UCYN-A] gi|284809080|gb|ADB94785.1| Excinuclease ABC subunit C [cyanobacterium UCYN-A] Length = 629 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 196/618 (31%), Positives = 305/618 (49%), Gaps = 26/618 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVT 63 + P PGVY MLD +LY+GK+ L+ R++SY HT RI M+ Q+NNI F VT Sbjct: 23 EFPLEPGVYLMLDKQEDILYIGKSKRLRVRVRSYFQEGQYHTPRINLMLQQVNNIEFIVT 82 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQGSY 121 E EAL LEAN+IK+ +P FN+LL+DDK +PY+ IT + P ++ R + Y Sbjct: 83 DNEAEALALEANLIKQYQPYFNVLLKDDKKYPYVCITWSEEYPRIFITRKRRLDNKKDRY 142 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GP+ + +T+ ++R F LR +F + RPCL + I RC G C I+S +Y Sbjct: 143 YGPYVDTHKLRETLRLVRRVFPLRQRKRPLF--KDRPCLNYDIGRCPGVCQKLITSNQYH 200 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + V + G L +++ M + + +E A RDR+ AL + + + Sbjct: 201 KIVAKIAMIFQGRTEELVQRLDTQMKLYSTQLKFEQAAQIRDRIEALQELNINQKVVLPN 260 Query: 242 ----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D +L + + CIQ G+ G FF S + + + ++ + Sbjct: 261 DTVSRDVIALASDNSCTCIQLFQIRGGRLIGRLGFFADNISGTLGSILQRVLEEHYWQVE 320 Query: 298 P--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P P +++ E + + + G KV +TVPK+ +K +II NA + Sbjct: 321 PIEIPNEVVVQYELPKVDVFTDWLKNKKGKKVTVTVPKKQQKIEIINLVQRNAAYELEKT 380 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 + L+D T L +IP RIE YD SHI G +AV VV + YR + Sbjct: 381 QKDMEQNLSSLQDLTTILNLKNIPYRIEGYDISHIQGSNAVASQVVFINGIPAQQSYRHY 440 Query: 416 NLHPND--VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 + + DD A + V+ RRF+ + +P++V++DGGK Sbjct: 441 KIKNTAIGIGHSDDFACLAEVIGRRFNSYRN-------LKIEDLLKLDDYPNLVLIDGGK 493 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 GQLSA +LK++ + + +IS+AK + E F AL+ N P L ++++ Sbjct: 494 GQLSAVVKILKEMKLFPLLEVISLAKKNE-----EIFVPGNSNALITNSEQPGLKLLRKV 548 Query: 534 RDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDEAHRFAI HR++R K + S LD+I G+G R++ LL F +V I +S E+L Sbjct: 549 RDEAHRFAINYHRQQRLKYSRSSQLDDIPGLGFQRQKELLSFFHSVDYIREASVESLRKA 608 Query: 593 EGISKKIACKIYNHFHKN 610 GI +A +IY +FH + Sbjct: 609 PGIGYSLAREIYEYFHPD 626 >gi|108761605|ref|YP_630852.1| excinuclease ABC subunit C [Myxococcus xanthus DK 1622] gi|119367676|sp|Q1D921|UVRC_MYXXD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|108465485|gb|ABF90670.1| excinuclease ABC, C subunit [Myxococcus xanthus DK 1622] Length = 646 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 187/634 (29%), Positives = 313/634 (49%), Gaps = 41/634 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQI-NNIRF 60 + +P PGVY M D G+V+YVGKA NL+ R++SY + T ++ Q+ ++ Sbjct: 8 KLDALPTEPGVYLMKDRRGQVIYVGKAINLRSRVRSYFNRTGDTRVFVSLLDQLLGDLET 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 + E EALLLE +IK+ +PRFN+LL+DDK F + + P L R Sbjct: 68 VLVSNEKEALLLENELIKKHRPRFNVLLKDDKQFISLRLDRTQPYPRLEVVRKYERDGAR 127 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGP++S A+ +T+ + R F LR+C D V +R RPCLL QI RC PC + E Y Sbjct: 128 YFGPYSSAGAIRETLRVVNRFFRLRTCTDHVLANRKRPCLLHQIGRCPAPCVYPVPQEDY 187 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--- 237 V E FL G L E + M +A + +E A RD+L A+ Sbjct: 188 HRSVDEVVMFLEGKAGELVEGLRLRMKRAAQELKFEEAARIRDQLNAIERSLERQKVATT 247 Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 + D F+ + + + G+ F E + ++++ F+ +Y Sbjct: 248 DFKDQDVFAFHREGDRILFYVLWVRQGR-LNGGQAFPFGSQEFPDEELIASFVNLYYDQG 306 Query: 298 PC--PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 E +L E + T LE ++ G +V++ VPK+GEK +++ A NA ++ ++ Sbjct: 307 SFVPEEVLLPLELEDGTGGLEALLTERKGERVRVLVPKRGEKLDLVKMAAKNAEQAFVER 366 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 T+ +L ++ L + P R+E +D SH G + V V V + K++YRK+ Sbjct: 367 RRTKDETDTVLSRLQQRLGLRNFPCRMECFDISHFQGSAIVASQVAVTDGDADKSRYRKY 426 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 + ++ QDD A M V+ RR + +++ + PD++++DGGKGQ Sbjct: 427 KIKT--LEKQDDFASMYEVISRRLKKGLEDND---------------LPDLLVIDGGKGQ 469 Query: 476 LSAAQGVLKKLNVENRITIISIAK---------GPKRSAGME-KFFVKKGEALVLNMRDP 525 L++A +K + VE + ++ +AK + + E F V + + +VL+ Sbjct: 470 LASAHAAMKDVGVE-SVDVVGLAKSRDLEVFDRDAESARSPERIFVVGRKDPIVLSQNSA 528 Query: 526 ILYFIQRLRDEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 ++ + R+RDEAHRFAIT ++ RK S L++I G+G R++ LL+ FG++K + + Sbjct: 529 EMFMLTRMRDEAHRFAITFQKQVLRKSRVRSALEDIPGVGETRRKQLLRHFGSLKRVGDA 588 Query: 585 SPETLASIEGISKKIACKIYNHFH---KNTSHTP 615 S E LA + G +A +++ H + + P Sbjct: 589 SIEELAEVVG--PAMAERVHAGLHGHPEEDAEDP 620 >gi|282890652|ref|ZP_06299175.1| hypothetical protein pah_c022o275 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499649|gb|EFB41945.1| hypothetical protein pah_c022o275 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 614 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 198/628 (31%), Positives = 308/628 (49%), Gaps = 32/628 (5%) Query: 2 SSEQM---PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINN 57 + + P PGVY M + G +LYVGKA NL+ RI+ Y S + I ++ QI + Sbjct: 4 DPKTLSLYPNHPGVYLMKNRTGMILYVGKAKNLRTRIRQYFMTSGDGREMIPFLVPQIES 63 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYK--HRDSS 115 I +E EALLLE+++IK+ KP++N LL+DDKS+ + I K+ P L +R Sbjct: 64 IETISVTSEKEALLLESHLIKKHKPKYNALLKDDKSYVALKINVKNPWPMLSLERYRGKP 123 Query: 116 TIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEI 175 G YFGP+ A +T++ L R F LR C+D+ F RTRPC+L+ +KRC PC + Sbjct: 124 KADGVYFGPYTHAGAARRTLDLLHRLFPLRQCSDAEFARRTRPCILYDMKRCIAPCVQKC 183 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 + E+Y V KFL G N + +++ + M ++E A D + + Sbjct: 184 TKEEYQIQVDRTIKFLRGQNKEILQEMYQEMETYAENLEFEKAGKSLDTIRYIEKTIEPQ 243 Query: 236 DSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 D +Y + F G+ + +F ++ + S+ L+ Sbjct: 244 YVDSVSGKDADALGIYRQGEDVMLCQLLFREGRLTSSQSFNFTKIADDDAELLTSFVLQH 303 Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 + P ILL E E+ L + KV++ PK+G K +I+ A NA S Sbjct: 304 YQNRDFLPHEILLPIEIEDEVALTELLSENRARKVQVYAPKRGGKSVLIDMAQANAEASF 363 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 ++ + + + IL ++F L + PKRIE DNSHI G V ++V + Y Sbjct: 364 KKEKNEQTLRENILLAIQEQFHLTNYPKRIECIDNSHIAGTEHVSSVIVFTDGKKDTRNY 423 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472 R + L DD MR VL RR+ + + PD++I+DGG Sbjct: 424 RTYTLKQA--GPSDDYGAMREVLTRRYGKAKDEND---------------LPDLLIIDGG 466 Query: 473 KGQLSAAQGVLKKLNVENRITIISIAK---GPKRSAGMEKFFVKK-GEALVLNMRDPILY 528 KG L+ A VL +L++ + +I IAK R +E+ F+ + L+L + PIL+ Sbjct: 467 KGHLNIALKVLVELDI-ISVNVIGIAKEQGRHDRGLTLEQVFLPNVKDPLILKVTSPILF 525 Query: 529 FIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 +Q++RDEAHRF I HRKR K+ S LD++ GIGP +K+ LL+ FG++K I +S E Sbjct: 526 ILQQIRDEAHRFVIKFHRKRMQKRTIKSILDDVPGIGPAKKKALLKHFGSIKKIKEASDE 585 Query: 588 TLASIEGISKKIACKIYNHFHKNTSHTP 615 L ++GIS+ ++ F + P Sbjct: 586 ELKKMKGISEGNIVQLRQFFAVKANDDP 613 >gi|242373378|ref|ZP_04818952.1| excinuclease ABC subunit C [Staphylococcus epidermidis M23864:W1] gi|242348741|gb|EES40343.1| excinuclease ABC subunit C [Staphylococcus epidermidis M23864:W1] Length = 594 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 172/613 (28%), Positives = 283/613 (46%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D +V+YVGKA L+ R++SY H + T ++S+I N F VT + Sbjct: 15 VPLEPGCYLMKDRNAQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVSEIRNFEFIVTSS 73 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L R G YFGP+ Sbjct: 74 ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKHPRLIVTRTVKKGTGKYFGPY 132 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + ++T L R + R C + + CL + I +C GPC ++ Y + Sbjct: 133 PNAYSAQETKKLLDRIYPFRKCDNMP----DKLCLYYHIGQCMGPCVYDVDLNVYAQMTK 188 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E FL+G + + + M +A+ D+E A +RD + + ++ + Sbjct: 189 EITDFLNGEDKTIINNLEDKMTKASESLDFEQAKEYRDMIQHIHNLTKKQKIMSTDNTIR 248 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G + P+ Sbjct: 249 DVFGYSVSKGWMCVQVFFIRQGNMIKRDATMIPIQQTEEEEFYTFIGQFYSLNQHILPKE 308 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 + + + ++ + + K I P +G K+++I+ A NA Sbjct: 309 VHVPKNLDKDIIKSVVDTK-------IVQPSRGSKKEMIDLANHNAEVQLENKFELIARD 361 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ ++ + P RIE +DNS+I G V MV + K YRK+ + Sbjct: 362 ESRTVKAIEELGERMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPDKKGYRKYKIK 420 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++++ PD++I+DGGKG ++ Sbjct: 421 T--VEGPDDYKSMREVVRRRYTRVLNEG--------------LPLPDLIIVDGGKGHMNG 464 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 VL+ +L ++ I + + K K E + E + L Y + R++DE Sbjct: 465 VMDVLENELGLD--IPVAGLQKNDKHQTS-ELLYGASAEVVPLKKNSQAFYLLHRIQDEV 521 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R+K S LD+++GIG RK LL++FG++K + +S + L G+ Sbjct: 522 HRFAITFHRQTRQKTGLKSVLDDVDGIGSKRKTTLLRTFGSIKKMKEASLDDLKK-SGLP 580 Query: 597 KKIACKIYNHFHK 609 +K+A + Sbjct: 581 EKVAKNLQQALQN 593 >gi|270295026|ref|ZP_06201227.1| excinuclease ABC, C subunit [Bacteroides sp. D20] gi|270274273|gb|EFA20134.1| excinuclease ABC, C subunit [Bacteroides sp. D20] Length = 606 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 175/622 (28%), Positives = 310/622 (49%), Gaps = 49/622 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PG+YQ L+ G ++YVGKA NL++R+ SY + + + ++S+I +IR+ V Sbjct: 16 NLPESPGIYQYLNTEGTIIYVGKAKNLKRRVSSYFNREHEPGKTRVLVSKIADIRYIVVN 75 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + + P +++ R SY+GP Sbjct: 76 TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRVFRTRKIIRNGSSYYGP 134 Query: 125 FASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + ++ ++ ++ RT L +++ + CL + IK C+GPC G+ S E+ Sbjct: 135 YSHIPSMYALLDLIKHLYPLRTCHLNLSPENIRAGKFNVCLEYHIKNCAGPCIGKQSQEE 194 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y++ + E K+ L G ++ + + M + + +E A +++ L + + ++ + Sbjct: 195 YLKNIAEIKEILKGNTQEIERMLFQQMQELAAEMKFEEAQKIKEKYLLLENYRAKSEVVS 254 Query: 240 NRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 N + ++ + A + G TF K + ++LS + + Sbjct: 255 NVLHNIDVFSIEEDSDEKSAFVNYLHITNGAINQAFTFEYKKRLNESKEELLSLGIIEMR 314 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 ++ + L V T+P++G+K+K++E +++N + Sbjct: 315 ERYKSLSREIIVPFELDMEL----------KDVVFTIPQRGDKKKLLELSILNVKQYKAD 364 Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 +L E +LK+ ++ L +P +IE +DNS+I G V VV + Sbjct: 365 RLKQAEKLNPEQRTVRLLKEIQQELHLDRLPMQIECFDNSNIQGSDPVAGCVVFVKGKPS 424 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 K YRK+N+ V+ DD A M+ V++RR+ + I+ + PD++I Sbjct: 425 KKDYRKYNIKT--VEGPDDYASMKEVVKRRYQRAIEEK--------------APLPDLLI 468 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 DGGKGQ+SA + + +L + I I +AK K E + + + L P+ Sbjct: 469 TDGGKGQMSAVKEAIDELGL--NIPIAGLAKDGKHRTS-ELLYGYPPQTIGLKQNTPLFR 525 Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 + +++DE HRFAIT HR +R K S LDEI GIG K LL+ F +VK I +S E Sbjct: 526 LLTQIQDEVHRFAITFHRDKRSKRQIASALDEIKGIGEKTKSALLKEFKSVKRIREASAE 585 Query: 588 TLASIEGISKKIACKIYNHFHK 609 LA++ G + A I +F + Sbjct: 586 ELAAVVG--EAKAKIIQTYFSE 605 >gi|319401540|gb|EFV89750.1| excinuclease ABC, C subunit [Staphylococcus epidermidis FRI909] Length = 594 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 176/613 (28%), Positives = 286/613 (46%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D +V+YVGKA L+ R++SY H + T ++ +I N F VT + Sbjct: 15 VPLEPGCYLMKDRNDQVIYVGKAKRLRNRLRSYFTGA-HDAKTTRLVGEIRNFEFIVTSS 73 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L R G YFGP+ Sbjct: 74 ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKHPRLLVTRTVKKNSGKYFGPY 132 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + ++T L R + R C + + CL + I +C GPC ++ EKY + Sbjct: 133 PNAYSAQETKKLLDRIYPFRKCDNMP----DKLCLYYHIGQCMGPCVYDVDLEKYAQMTK 188 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E FL+G + + + MN+A+ + D+E A +RD + + ++ + + Sbjct: 189 EITDFLNGEDKTILNHLEDRMNKASEQLDFEQAKEYRDMIQHIHNLTKKQKIMSSDNTIR 248 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G + P+ Sbjct: 249 DVFGYSVSKGWMCVQVFFVRQGNMIKRDATMIPIQQTEEEEFYTFIGQFYSLNQHLIPKE 308 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358 + + + ++ + + K I P +G K+ +I A NA Sbjct: 309 VHVPKNLDKDIIQSVVDTK-------IVQPVRGAKKDMINLANHNAEVQLDNKFELIARD 361 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ ++ + P RIE +DNS+I G V MV + K YRK+ + Sbjct: 362 ESRTIKAIEELGERMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPHKKDYRKYKIK 420 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++++ PD++I+DGGKG ++ Sbjct: 421 T--VEGPDDYKSMREVVRRRYTRVLNEG--------------LPLPDLIIVDGGKGHMNG 464 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 VL+ +L ++ I + + K K E + E + L Y + R++DE Sbjct: 465 VMDVLENELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R+K S LD+I+GIG RK LL++FG++K + +S + L G+ Sbjct: 522 HRFAITFHRQTRQKTGLKSVLDDIDGIGTKRKTSLLRTFGSIKKMKEASFDELRQA-GLP 580 Query: 597 KKIACKIYNHFHK 609 +K+A + N Sbjct: 581 EKVAKNLQNALQN 593 >gi|57866656|ref|YP_188312.1| excinuclease ABC subunit C [Staphylococcus epidermidis RP62A] gi|71153398|sp|Q5HQ28|UVRC_STAEQ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|57637314|gb|AAW54102.1| excinuclease ABC, C subunit [Staphylococcus epidermidis RP62A] Length = 594 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 176/613 (28%), Positives = 286/613 (46%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D +V+YVGKA L+ R++SY H + T ++ +I N F VT + Sbjct: 15 VPLEPGCYLMKDRNDQVIYVGKAKRLRNRLRSYFTGA-HDAKTTRLVGEIRNFEFIVTSS 73 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L R G YFGP+ Sbjct: 74 ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKHPRLLVTRTVKKNSGKYFGPY 132 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + ++T L R + R C + + CL + I +C GPC ++ EKY + Sbjct: 133 PNAYSAQETKKLLDRIYPFRKCDNMP----DKLCLYYHIGQCMGPCVYDVDLEKYAQMTK 188 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E FL+G + + + MN+A+ + D+E A +RD + + ++ + + Sbjct: 189 EITDFLNGEDKTILNHLEERMNKASEQLDFEQAKEYRDMIQHIHNLTKKQKIMSSDNTIR 248 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G + P+ Sbjct: 249 DVFGYSVSKGWMCVQVFFVRQGNMIKRDATMIPIQQTEEEEFYTFIGQFYSLNQHLIPKE 308 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358 + + + ++ + + K I P +G K+ +I A NA Sbjct: 309 VHVPKNLDKDIIQSVVDTK-------IVQPVRGAKKDMINLANHNAEVQLDNKFELIARD 361 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ ++ + P RIE +DNS+I G V MV + K YRK+ + Sbjct: 362 ESRTIKAIEELGERMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPHKKDYRKYKIK 420 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++++ PD++I+DGGKG ++ Sbjct: 421 T--VEGPDDYKSMREVVRRRYTRVLNEG--------------LPLPDLIIVDGGKGHMNG 464 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 VL+ +L ++ I + + K K E + E + L Y + R++DE Sbjct: 465 VMDVLENELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R+K S LD+I+GIG RK LL++FG++K + +S + L G+ Sbjct: 522 HRFAITFHRQTRQKTGLKSVLDDIDGIGTKRKTSLLRTFGSIKKMKEASFDELRQA-GLP 580 Query: 597 KKIACKIYNHFHK 609 +K+A + N Sbjct: 581 EKVAKNLQNALQN 593 >gi|163787198|ref|ZP_02181645.1| excinuclease ABC, C subunit [Flavobacteriales bacterium ALC-1] gi|159877086|gb|EDP71143.1| excinuclease ABC, C subunit [Flavobacteriales bacterium ALC-1] Length = 597 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 177/626 (28%), Positives = 303/626 (48%), Gaps = 52/626 (8%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + +P PGVYQ D +++YVGKA N++KR+ SY ++ + ++ I +++ Sbjct: 8 IQIKTLPHQPGVYQYFDADEKLIYVGKAKNIKKRVSSYFTKHHEYGKTRVLVKNIASVKH 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE +ALLLE N+IK+ +P++N++L+DDKS+P+I I K + P ++ R Sbjct: 68 IVVETENDALLLENNLIKKYQPKYNVMLKDDKSYPWICI-KKERFPRVFSTRRVFKDGSE 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-----VFRHRTRPCLLFQIKRCSGPCTGEI 175 YFGP+ S+ V+ + ++ + LR+C + + + CL + + C GPC G Sbjct: 127 YFGPYTSMKTVKTLLGLIKGLYQLRTCNYDLSEAKIKAGKYKVCLEYHLGNCKGPCEGYE 186 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 + E+Y + ++ L G + ++ M Q +E A +++L L + Q + Sbjct: 187 TEEEYHSNITAIREILKGNFKDSLQQFRIQMKQHAENMQFEDAQKIKEKLEVLENYQAKS 246 Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 + +D FS+ ++ A + +G + T LK + ++ ++L + + Sbjct: 247 TIVNPKISDVDVFSIVSDETYAYVNFLQLSYGSIIRSHTLELKKKLQESDTELLELAITE 306 Query: 293 FYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 + I + + ++K+T+PK G+K+ I++ + NA Sbjct: 307 IRQRFNSNSKEIYVPFKVNLGE------------QIKVTIPKLGDKKSILDLSRRNAMYY 354 Query: 352 HTQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405 KL + I+ L P+ IE +DNS+I G V VV Sbjct: 355 RMDKLKQMKIVDPDRHANRIMAQMKADLRLSEEPRHIECFDNSNIQGTHPVAACVVFKNG 414 Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465 K YR FN+ V DD A M V+ RR+ +L++ ++ L P Sbjct: 415 KPSKKDYRHFNIKT--VVGPDDFASMEEVVYRRYKRLVEEKQPL--------------PQ 458 Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525 ++I+DGGKGQLS+A L L + +I II IAK + E F+ L L+ + Sbjct: 459 LIIIDGGKGQLSSALKSLDNLGLRGKIAIIGIAKRLE-----ELFYPDDSIPLYLDKKSE 513 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 L IQ+LR+EAHRF I HR RR K+ + L+ I+G+G L++ F TVK I+ + Sbjct: 514 TLKIIQQLRNEAHRFGIEHHRNRRSKSALTTELENISGVGEQTIIDLMKRFKTVKRIANA 573 Query: 585 SPETLASIEGISKKIACKIYNHFHKN 610 + L ++ G+S+ A KIYN++HK Sbjct: 574 KLDELEAVVGVSR--ANKIYNYYHKE 597 >gi|317478019|ref|ZP_07937201.1| excinuclease ABC [Bacteroides sp. 4_1_36] gi|316905808|gb|EFV27580.1| excinuclease ABC [Bacteroides sp. 4_1_36] Length = 606 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 176/622 (28%), Positives = 310/622 (49%), Gaps = 49/622 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PG+YQ L+ G ++YVGKA NL++R+ SY + + + ++S+I +IR+ V Sbjct: 16 NLPESPGIYQYLNTEGTIIYVGKAKNLKRRVSSYFNREHEPGKTRVLVSKIADIRYIVVN 75 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + + P +++ R SY+GP Sbjct: 76 TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRVFRTRKIIRNGSSYYGP 134 Query: 125 FASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + ++ ++ ++ RT L +++ + CL + IK C+GPC G+ S E+ Sbjct: 135 YSHIPSMYALLDLIKHLYPLRTCHLNLSPENIRAGKFNVCLEYHIKNCAGPCIGKQSQEE 194 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y++ + E K+ L G ++ + + M + + +E A + + L + + ++ + Sbjct: 195 YLKNIAEIKEILKGNTQEIERMLFQQMQELAAEMKFEEAQKIKKKYLLLENYRAKSEVVS 254 Query: 240 NRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 N + ++ + A + G TF K + ++LS + + Sbjct: 255 NVLHNIDVFSIEEDSDEKSAFVNYLHITNGAINQAFTFEYKKRLNESKEELLSLGIIEMR 314 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 ++ + L V T+P++G+K+K++E +++N + Sbjct: 315 ERYKSLSREIIVPFELDMEL----------KDVVFTIPQRGDKKKLLELSILNVKQYKAD 364 Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 +L E +LK+ ++ L +P +IE +DNS+I G V VV + Sbjct: 365 RLKQAEKLNPEQRTVRLLKEIQQELHLDRLPMQIECFDNSNIQGSDPVAGCVVFVKGKPS 424 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 K YRK+N+ V+ DD A M+ V++RR+ + I+ + PD++I Sbjct: 425 KKDYRKYNIKT--VEGPDDYASMKEVVKRRYQRAIEEK--------------APLPDLLI 468 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 DGGKGQ+SA + V+ +L + I I +AK K E + + + L P+ Sbjct: 469 TDGGKGQMSAVKEVIDELGL--NIPIAGLAKDGKHRTS-ELLYGYPPQTIGLKQNTPLFR 525 Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 + +++DE HRFAIT HR +R K S LDEI GIG K LL+ F +VK I +S E Sbjct: 526 LLTQIQDEVHRFAITFHRDKRSKRQIASALDEIKGIGEKTKSALLKEFKSVKRIREASAE 585 Query: 588 TLASIEGISKKIACKIYNHFHK 609 LA++ G + A I +F + Sbjct: 586 ELAAVVG--EAKAKIIQTYFSE 605 >gi|242242446|ref|ZP_04796891.1| excinuclease ABC subunit C [Staphylococcus epidermidis W23144] gi|242234096|gb|EES36408.1| excinuclease ABC subunit C [Staphylococcus epidermidis W23144] Length = 600 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 176/613 (28%), Positives = 286/613 (46%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D +V+YVGKA L+ R++SY H + T ++ +I N F VT + Sbjct: 21 VPLEPGCYLMKDRNDQVIYVGKAKRLRNRLRSYFTGA-HDAKTTRLVGEIRNFEFIVTSS 79 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L R G YFGP+ Sbjct: 80 ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKHPRLLVTRTVKKNSGKYFGPY 138 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + ++T L R + R C + + CL + I +C GPC ++ EKY + Sbjct: 139 PNAYSAQETKKLLDRIYPFRKCDNMP----DKLCLYYHIGQCMGPCVYDVDLEKYAQMTK 194 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E FL+G + + + MN+A+ + D+E A +RD + + ++ + + Sbjct: 195 EITDFLNGEDKTILNHLEERMNKASEQLDFEQAKEYRDMIQHIHNLTKKQKIMSSDNTIR 254 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G + P+ Sbjct: 255 DVFGYSVSKGWMCVQVFFVRQGNMIKRDATMIPIQQTEEEEFYTFIGQFYSLNQHLIPKE 314 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358 + + + ++ + + K I P +G K+ +I A NA Sbjct: 315 VHVPKNLDKDIIQSVVDTK-------IVQPVRGAKKDMINLANHNAEVQLDNKFELIARD 367 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ ++ + P RIE +DNS+I G V MV + K YRK+ + Sbjct: 368 ESRTIKAIEELGERMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPHKKDYRKYKIK 426 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++++ PD++I+DGGKG ++ Sbjct: 427 T--VEGPDDYKSMREVVRRRYTRVLNEG--------------LPLPDLIIVDGGKGHMNG 470 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 VL+ +L ++ I + + K K E + E + L Y + R++DE Sbjct: 471 VMDVLENELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 527 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R+K S LD+I+GIG RK LL++FG++K + +S + L G+ Sbjct: 528 HRFAITFHRQTRQKTGLKSVLDDIDGIGTKRKTSLLRTFGSIKKMKEASFDELRQA-GLP 586 Query: 597 KKIACKIYNHFHK 609 +K+A + N Sbjct: 587 EKVAKNLQNALQN 599 >gi|146296208|ref|YP_001179979.1| excinuclease ABC, C subunit [Caldicellulosiruptor saccharolyticus DSM 8903] gi|238685556|sp|A4XIQ3|UVRC_CALS8 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|145409784|gb|ABP66788.1| Excinuclease ABC subunit C [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 593 Score = 468 bits (1205), Expect = e-129, Method: Composition-based stats. Identities = 204/608 (33%), Positives = 306/608 (50%), Gaps = 35/608 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY M D G+V+YVGKA NL+ R++ Y +++ T + M+ +I + + VT Sbjct: 10 NLPTTPGVYMMKDENGKVIYVGKAVNLRNRVRQYFQNSDMTPKTRLMVKKIKDFEYIVTD 69 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TEVEAL+LE N+IK +P++N+LLRDDK++ YI IT+ P L R YFGP Sbjct: 70 TEVEALILECNLIKEYRPKYNVLLRDDKNYQYIKITN-EMFPRLVTTRKVEKDGAKYFGP 128 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSEKYME 182 + S +V++TI L+ F LR+C + RPCL F I+RC G C G+I E+Y + Sbjct: 129 YVSGYSVKQTIELLKSLFMLRTCKRKFPDQLGKGRPCLNFYIERCLGVCKGDIPEEEYQK 188 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--- 239 V +A K LSG + E++ + M + +E A ++++ +L I IY Sbjct: 189 LVEKAVKVLSGKGDEIVEELKKKMFEYADNLMFEKAQEIKNKITSLEQIITKQKVIYADD 248 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-KP 298 D + + + CI G+ F LK D ++ FL Q+Y+D Sbjct: 249 RSEDVINYAEDSSNICIVVLVIRNGKLINKEEFVLKNDE-----EVFERFLEQYYSDVVS 303 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P+ I+L E +E K YG+K KI VPKQGEK++++E A NA S K Sbjct: 304 VPKEIILPHEVGNGENIEKMIEKLYGFKAKIVVPKQGEKKQLLEMAKKNAEISLVNKQRI 363 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E + L + H ++IE YD S++ G VG +VV + F K+ YRKF L Sbjct: 364 ENYYIEALLHLKNLLGIEHDIEKIESYDISNLAGADNVGTLVVFEDGKFNKDLYRKFKLK 423 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + QDD ++ VL RRF+ L K PD++++DGG+ Q++A Sbjct: 424 S--FEGQDDIRSVKEVLTRRFTNLEK---------------HGRLPDLILIDGGQNQVNA 466 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A VL+ L I + + K + + KG+ L + + I +++E H Sbjct: 467 AVEVLRSLGF--NIPVAGMVKDDRHKTRD---LIYKGQELNIQRDSLVFKLISTIQEETH 521 Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFA+ HR+ RKK S LDEI GIG RK L + FG++ + ++S E + I Sbjct: 522 RFAVKYHRELRKKHLYESILDEIEGIGEKRKIKLFRIFGSIDNLRKASIEEIVKAADIPY 581 Query: 598 KIACKIYN 605 IA KI Sbjct: 582 DIALKIKE 589 >gi|300814484|ref|ZP_07094745.1| excinuclease ABC, C subunit [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511402|gb|EFK38641.1| excinuclease ABC, C subunit [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 619 Score = 468 bits (1205), Expect = e-129, Method: Composition-based stats. Identities = 195/617 (31%), Positives = 309/617 (50%), Gaps = 24/617 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 Q+P+ PGVY M + ++YVGKA +L+KR++ Y S + ++ M+S I + + + Sbjct: 10 QLPDKPGVYIMKNSTDEIIYVGKAKSLRKRVRQYFGSYGKSSAKVKSMVSHIYDFEYIIV 69 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 EVE+L+LE+N+IK P++NILLRDDK +PYI +T P + K R YFG Sbjct: 70 ENEVESLILESNLIKDNLPKYNILLRDDKQYPYIKVTTNELYPRVMKTRRILKDGAKYFG 129 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSEKYM 181 P+ V AV +I++ + F LR+C+ ++ ++ + R CL F I +C GPC G + Y Sbjct: 130 PYPDVYAVNDSIDTFESLFPLRTCSLNMEKNMGKYRACLNFYIGKCLGPCQGNVDENSYK 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN----DS 237 + + E FLS + + ++ M + + +YE A RDR+ L ++ Sbjct: 190 KMIDEILDFLSLKSDAILTRLEDKMKEFSYNLEYEKAAEIRDRIKNLKELREKQLISNPM 249 Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 N D +L + IQ F G+ G + L +I S F++QFY Sbjct: 250 STNDKDIIALAKGIDEVLIQIFFIRDGKIIGREHYMLNDYFNEPLEEIFSAFIKQFYNGT 309 Query: 298 P-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P+ I++ EE + +LE + KV ITVP+ G+K+++I+ NA + Sbjct: 310 SYIPKEIIIEEEPAQKEVLEEWLSTKRSNKVTITVPQIGQKKELIQMVHKNALDMINKYG 369 Query: 357 STEISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 L++ T L RIE YD S+I G +VG MVV + K+ Y Sbjct: 370 DKYAKRAKSNSLALEEITDILGLDIKLNRIEAYDISNISGVESVGSMVVFEKGESKKSDY 429 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472 RKF + V +D A ++ VL RRF + I + P SF +PD++++DGG Sbjct: 430 RKFRIKT--VIGPNDYASLKEVLTRRFLRGINERIDKEKGPS----SFSRFPDMIMMDGG 483 Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532 KGQ++ A VLK+L V I +I + K + + + L++ I + Sbjct: 484 KGQVNIALDVLKELGV--NIVVIGLVKDDFHTTRG---IIYNNKEYSLDLNSKGYKMIYK 538 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +++EAHRFAI HR R K S LD+I IG RK LL+ F ++ I ++S + L Sbjct: 539 IQEEAHRFAINYHRSLRNKDMFKSELDDIPLIGEKRKNNLLKYFKSLDKIKKASVDELKE 598 Query: 592 IEGISKKIACKIYNHFH 608 + G+ + A +YNHF+ Sbjct: 599 VSGMDIRSAESLYNHFN 615 >gi|116070556|ref|ZP_01467825.1| excinuclease ABC subunit C [Synechococcus sp. BL107] gi|116065961|gb|EAU71718.1| excinuclease ABC subunit C [Synechococcus sp. BL107] Length = 661 Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats. Identities = 192/638 (30%), Positives = 302/638 (47%), Gaps = 32/638 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFT 61 + +P PG Y M D R+LYVGK+ L+ R++SY S + + RI M Q+ I F Sbjct: 21 LKDIPAEPGCYLMRDGDDRILYVGKSKTLRSRVRSYFRSRHDLSPRIRLMTRQVCEIEFI 80 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ--G 119 VT +E EAL LE+N+IK +P FN+LL+DDK +PY+ IT P ++ R Sbjct: 81 VTDSEAEALALESNLIKNHQPHFNVLLKDDKKYPYLCITWSEAYPRIFITRRRRFRSPLD 140 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++GP+ V + +T+ ++R F LR + + RT CL + I RC G C ISS+ Sbjct: 141 RFYGPYVDVGLLRRTLFLVKRVFPLRQRPRPLHQDRT--CLNYSIGRCPGVCQEMISSDD 198 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + + G + L+ + M + + DYESA RD+L L + Sbjct: 199 YHRTLRKVAMVFQGRSDELQHLLQEQMQKYADRTDYESAARVRDQLHGLDQLTADQKMSL 258 Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D +L ++ LA +Q G+ G + S + IL + + Y+ Sbjct: 259 PDSSVSRDVLALACDERLAAVQLFQMRAGKLVGRLGYTAD-ASGLSPGLILQRVIEEHYS 317 Query: 296 DKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 P +L+ + LLE +Q KV+I P++ +K +IE NA Sbjct: 318 QVDAVEVPPQLLVQHPLPQQLLLEEWLTEQRERKVQIHCPQRRQKADLIELVQRNAEFEL 377 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + + +D + LP P+RIE YD SHI G AV VV + K Y Sbjct: 378 LRAKQGQEQQALSTEDLAQLLDLPLPPRRIEGYDISHIQGSDAVASQVVFIDGLPAKQHY 437 Query: 413 RKFNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENL--------NFHPKKQEYSFPS 462 RK+ + + ++ D M ++ RRF + + + + Q Sbjct: 438 RKYKIQSSSIRAGHSDDFMAMAEIMRRRFRRWARAKADGVDLGALRQKGGSALQTDGLND 497 Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522 WPD+V++DGGKGQLSA L++LN+ + + + S+AK + E F + + L Sbjct: 498 WPDLVMIDGGKGQLSAVMEALRELNLHDDLNVCSLAKQRE-----EVFLPGESQPLESEA 552 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMI 581 + ++RLRDEAHRFA++ HR++R + S L +I G+G R R LL F ++ I Sbjct: 553 DQLGVALLRRLRDEAHRFAVSFHRQQRGERMKRSRLSDIPGLGAKRVRDLLSHFHSIDAI 612 Query: 582 SRSSPETLASIEGISKKIACKIYNHFH---KNTSHTPT 616 +S +TLA G+ +A I+N FH +N P+ Sbjct: 613 QLASVDTLAKAPGVGPVLAQDIFNFFHPTNENNDSLPS 650 >gi|225872881|ref|YP_002754338.1| excinuclease ABC, C subunit [Acidobacterium capsulatum ATCC 51196] gi|254764918|sp|C1F4W9|UVRC_ACIC5 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|225794199|gb|ACO34289.1| excinuclease ABC, C subunit [Acidobacterium capsulatum ATCC 51196] Length = 645 Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats. Identities = 192/649 (29%), Positives = 313/649 (48%), Gaps = 58/649 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 +P PGVY + G V+YVGKA NL+ R++SY+ ++ + ++ + ++ + Sbjct: 6 KIRTLPTGPGVYLYKNADGEVIYVGKAKNLRSRVRSYLLEASQANAKTGSLMREAVDLDY 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 E EAL LE N+IK+ KPRFN+LLRDDK++PY+ +T + P ++ R + Sbjct: 66 ITVGNEHEALALENNLIKQRKPRFNVLLRDDKTYPYVKLTLGDRYPKVFVTRRLRKDGAA 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEK 179 Y+GPF + + ++ + R+F L SC + R+ R CL + IKRC GPC + E Sbjct: 126 YYGPFFPGNLAYRIVDLIHRSFLLPSCKVDLSRYHARACLQYYIKRCLGPCVKHLTTPEA 185 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y E V +A+ FL G +L+ + M +A E +E A +RD L L +Q Sbjct: 186 YREAVRDAQWFLEGRGADLERSLEVRMQEAAAAEQFELAAKYRDLLVTLHQLQEKQRVAS 245 Query: 240 NRMDC---FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE----------------- 279 D F ++ + + G+ FF + E Sbjct: 246 ADDDDADVFGYHYENGMLAVNLFHMRGGKMVDRREFFWEELPEFMEEGAQEEEVLPAQAE 305 Query: 280 ----------STNAQILSYFLRQFYTDKP-CPENILLSEEAEETSLLEISFFKQYGYKVK 328 S L+Q Y ++P P +I + + L +Q ++++ Sbjct: 306 GRGEVQVELRFEPGAFFSALLKQIYIEQPYVPRSIYVPVNFADREALAGLLAEQTHHRIE 365 Query: 329 ITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKD-FTKKFALPHIPKRIEIYDN 387 + VP++G+KR +++ A NA +S+ Q+ +Q +++ L +P+RIE +D Sbjct: 366 LAVPQRGDKRSLVDLAGQNARQSYEQRFRVMQPNQKAIQEALQDALMLEELPRRIECFDI 425 Query: 388 SHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE 447 SHI G V MVV K YRKF + V DD A MR VL RR+ ++I+ ++ Sbjct: 426 SHIQGAETVASMVVWENGAMKKADYRKFQIKT--VSGVDDFASMREVLTRRYRRVIEEKQ 483 Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507 + PDV+++DGG GQL AA L++L + T+ SIAK + Sbjct: 484 AM--------------PDVILIDGGIGQLRAAAAALEELGQTTQ-TVASIAKREEIIY-- 526 Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPL 566 + + E +VL R P+L+ +QR+RDE+HRFAI HRKRR+ + S L EI G+G Sbjct: 527 --LYGHEDEPIVLERRSPVLHLVQRIRDESHRFAIAYHRKRREMRDRDSELLEIPGVGTR 584 Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615 + LL+ FG+++ + ++ E L ++ + + A I HF + Sbjct: 585 TRTRLLEHFGSLRGVRKADVEALTAV--VPRPTAEAIAAHFQGEKAEPE 631 >gi|160888680|ref|ZP_02069683.1| hypothetical protein BACUNI_01097 [Bacteroides uniformis ATCC 8492] gi|156861994|gb|EDO55425.1| hypothetical protein BACUNI_01097 [Bacteroides uniformis ATCC 8492] Length = 606 Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats. Identities = 176/622 (28%), Positives = 310/622 (49%), Gaps = 49/622 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PG+YQ L+ G ++YVGKA NL++R+ SY + + + ++S+I +IR+ V Sbjct: 16 NLPESPGIYQYLNTEGTIIYVGKAKNLKRRVSSYFNREHEPGKTRVLVSKIADIRYIVVN 75 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + + P +++ R SY+GP Sbjct: 76 TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRVFRTRKIIRNGSSYYGP 134 Query: 125 FASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + ++ ++ ++ RT L +++ + CL + IK C+GPC G+ S E+ Sbjct: 135 YSHIPSMYALLDLIKHLYPLRTCHLNLSPENIRARKFNVCLEYHIKNCAGPCIGKQSQEE 194 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y++ + E K+ L G ++ + + M + + +E A + + L + + ++ + Sbjct: 195 YLKNIAEIKEILKGNTQEIERMLFQQMQELAAEMKFEEAQKIKKKYLLLENYRAKSEVVS 254 Query: 240 NRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 N + ++ + A + G TF K + ++LS + + Sbjct: 255 NVLHNIDVFSIEEDSDEKSAFVNYLHITNGAINQAFTFEYKKRLNESKEELLSLGIIEMR 314 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 ++ + L V T+P++G+K+K++E +++N + Sbjct: 315 ERYKSLSREIIVPFELDMEL----------KDVVFTIPQRGDKKKLLELSILNVKQYKAD 364 Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 +L E +LK+ ++ L +P +IE +DNS+I G V VV + Sbjct: 365 RLKQAEKLNPEQRTVRLLKEIQQELHLDRLPMQIECFDNSNIQGSDPVAGCVVFVKGKPS 424 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 K YRK+N+ V+ DD A M+ V++RR+ + I+ + PD++I Sbjct: 425 KKDYRKYNIKT--VEGPDDYASMKEVVKRRYQRAIEEK--------------APLPDLLI 468 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 DGGKGQ+SA + V+ +L + I I +AK K E + + + L P+ Sbjct: 469 TDGGKGQMSAVKEVIDELGL--NIPIAGLAKDGKHRTS-ELLYGYPPQTIGLKQNTPLFR 525 Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 + +++DE HRFAIT HR +R K S LDEI GIG K LL+ F +VK I +S E Sbjct: 526 LLTQIQDEVHRFAITFHRDKRSKRQIASALDEIKGIGEKTKSALLKEFKSVKRIREASAE 585 Query: 588 TLASIEGISKKIACKIYNHFHK 609 LA++ G + A I +F + Sbjct: 586 ELAAVVG--EAKAKIIQTYFSE 605 >gi|317132997|ref|YP_004092311.1| excinuclease ABC, C subunit [Ethanoligenens harbinense YUAN-3] gi|315470976|gb|ADU27580.1| excinuclease ABC, C subunit [Ethanoligenens harbinense YUAN-3] Length = 618 Score = 468 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 168/614 (27%), Positives = 298/614 (48%), Gaps = 21/614 (3%) Query: 1 MSSEQ--MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINN 57 + +E +P PGVY M + +G ++Y+GKA L+ R+ Y +H ++ M+ +++ Sbjct: 9 LKAESNTLPLSPGVYIMKNKSGNIIYIGKAKALKNRVSQYFWRFASHEGKVRKMVENVDH 68 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117 + +T +E EAL+LE ++IK+ KP++NILL+DDK + YI ++ + + P + + + Sbjct: 69 FDYILTDSEFEALVLECSLIKQHKPKYNILLKDDKGYSYIRVSLQEEWPRVESAKQVADD 128 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEI 175 Y GP+ S AV++T++ + F L C+ + + RPCL + I++C PC G++ Sbjct: 129 GALYLGPYISSFAVKETVDEAVKAFRLPVCSRHFPQDIGKGRPCLNYYIRQCCAPCRGKM 188 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 + +Y E V A FL GG + ++ M + ++E A RDR+AA+ I+ Sbjct: 189 PNAEYRELVDNAVTFLKGGYGLILNQLQEQMTVFSDALEFEKAARIRDRIAAIQKIRERQ 248 Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 D ++ + ++ G+ +F + + A + Sbjct: 249 KVVSSRVEEQDVIAMAGDGCSTAVEVFIIRGGRLCDRSSFLFEFMQDE-PAARAEFLRSY 307 Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 + K P + L E+ L+E G KV ITVP++GE+ + NA Sbjct: 308 YSQIKQAPPRVTLDGPTEDKELIEQYLSGLAGRKVSITVPQKGEQAALTAMVRANAQEKL 367 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + +L + K LP P IE YD S+ G V MVV + +K+ Y Sbjct: 368 NHLSQRPAHGEKVLDELGKLLGLPGRPAYIESYDISNTAGTGVVAGMVVFADGKPLKSAY 427 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472 ++F + V+ QDD A MR VL RR ++L + +E + F PD+++LDGG Sbjct: 428 KRFAIKT--VEGQDDYACMREVLSRRLARLKEAKEKGQEAGE----GFGRVPDLILLDGG 481 Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532 +G ++A + VL+ + I + + K K + G + +N + + Sbjct: 482 RGHVAAVRPVLEASGFD--IPLFGMVKDDKHRTRA---IARDGGEIAINASRGVFTLVSN 536 Query: 533 LRDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +++E HR+AI H K ++K +S L G+GP R R L++ FGT++ + +S E LA+ Sbjct: 537 IQEEVHRYAIAYHHKTQQKRGFSSRLTLAPGVGPARARALMKHFGTMEKLRAASEEELAA 596 Query: 592 IEGISKKIACKIYN 605 + G+S+ +A + Sbjct: 597 VPGMSRAVARTLKE 610 >gi|307701087|ref|ZP_07638112.1| excinuclease ABC, C subunit [Mobiluncus mulieris FB024-16] gi|307614082|gb|EFN93326.1| excinuclease ABC, C subunit [Mobiluncus mulieris FB024-16] Length = 702 Score = 468 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 189/696 (27%), Positives = 307/696 (44%), Gaps = 94/696 (13%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 ++P PGVY+ D GRV+YVGKA NL+ R+ SY R M++ ++ + Sbjct: 8 KPAEIPTAPGVYRWRDAHGRVIYVGKAKNLRNRLTSYFVDPAKLHPRTAKMVATAESVSW 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V +EVEAL LE IK P+FN++ +DDKS+PY +T + P + R + Sbjct: 68 VVVGSEVEALTLEYTWIKEYDPKFNVMFKDDKSYPYFAVTLNQEFPRMGVLRSAHQRGVR 127 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP---CLLFQIKRCSGPCTGEISS 177 YFGP+ +V A+ +T + L+ F +R+C D VF CL I RCS PC G IS+ Sbjct: 128 YFGPYTAVWAIRQTSDLLETVFPVRTCTDGVFARARAAGRACLKGYIGRCSAPCIGRISA 187 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 ++ E + F+SG L + M + +E A RD+L AL + N Sbjct: 188 AEHRELANRVCDFMSGHEAGLLRDLENQMWAESKAFRFEEAAKKRDQLEALRKVLEKNAV 247 Query: 238 IYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + + D F+L ++ +Q + G+ RG + + + ++++S L Q Y Sbjct: 248 VMDTDTDADLFALAADELQVSVQVFYVRAGRIRGQRGWISTIEEDVDTSELMSLALEQIY 307 Query: 295 TDKP---------------------------CPENILLSEEAEETSLLEISFFKQYGYKV 327 P+ IL+S + + LE G KV Sbjct: 308 GQVAAKLAQSGGAQLREPSSATDVAHFDTTYIPKQILVSVIPADPASLEAWLSGLRGSKV 367 Query: 328 KITVPKQGEKRKIIEQALINA----HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIE 383 I P++G KR+ +++ +NA T++ S + L + + + R+E Sbjct: 368 TIRRPQRGMKREAVKRVELNAVDGLRLYKTRRASDLTQRNLALNELGRALGIDPPL-RVE 426 Query: 384 IYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDC-AMMRMVLERRFSQL 442 YD SH G VG MVV + KN YRKF + + + D M VL RRF +L Sbjct: 427 CYDISHTQGTFQVGSMVVFEDGAPRKNAYRKFTVRGSQGQGAADDTEAMNEVLRRRFERL 486 Query: 443 IKNEENLNFHPK-----------------------------------------------K 455 I+ E + + Sbjct: 487 IQEETPAPHEVEPAVTDRGDPAARYVGESSVAGDVGDAASRGANPNPGEGLSGDPSGEIR 546 Query: 456 QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG 515 + F PD+V++DG Q+ AA+ + V + I ++ +AK + E + V Sbjct: 547 EPKRFSYRPDLVVVDGALPQVHAARAAMDAAGVWD-IPVVGLAKRLE-----EVWTVDSD 600 Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQS 574 ++ LY +Q LRDE+HRFAIT HRK+R + S LD I G+G ++++ LL+ Sbjct: 601 FPVIFPRTSTALYLLQYLRDESHRFAITAHRKKRGQAMTRSVLDGIPGLGSVKQKALLKH 660 Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 FG+++ I R+S E ++ + G + +A ++ + +N Sbjct: 661 FGSLRQIRRASAEDISKVPGFGQILATQVVKYLQEN 696 >gi|326802581|ref|YP_004320400.1| UvrABC system protein C [Sphingobacterium sp. 21] gi|326553345|gb|ADZ81730.1| UvrABC system protein C [Sphingobacterium sp. 21] Length = 599 Score = 468 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 184/624 (29%), Positives = 311/624 (49%), Gaps = 51/624 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN--HTHRITHMISQINNIR 59 +++P PGVYQ D G ++Y+GKA +L+ R+ SY + H + ++ +IN I Sbjct: 9 ELKKIPHKPGVYQYYDKQGTLIYIGKAKDLKNRVSSYFVKDEYLHNAKTRVLVRKINKIS 68 Query: 60 FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG 119 FT+ TE++A LLE ++IK+ +PR+N+LL+DDK++P+I+I + P ++ R Sbjct: 69 FTIVDTEIDAWLLENSLIKKHQPRYNVLLKDDKTYPWIVI-KNERFPRIFWTRKIIKDGS 127 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGE 174 YFGP+ASV + ++ ++ F LR+C +++ + + R CL +QI C GPC Sbjct: 128 KYFGPYASVGMMHAILSVIKEIFPLRTCNLPLTVNNIEQGKFRVCLEYQIGNCKGPCQAY 187 Query: 175 ISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234 + E+Y + + K L+G + +++ N+ AT +E A + + +L LS+ Q+ Sbjct: 188 QTEEEYNQNIESIKDILNGKTGVVFKQLKANLEHATNNLQFELAHVLKQKLELLSNYQSK 247 Query: 235 NDS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLR 291 + N +D F++ + A + G T T LK + ++ ++LS ++ Sbjct: 248 STIVSNTINDVDVFNIASEEGYAFVNFLKVMNGTVIQTQTLELKKRLDESDQELLSLAVQ 307 Query: 292 QFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA--- 348 + T ++ K TVP+ G+K+K+++ + N Sbjct: 308 ELRTRFNSTSKEIIVP----------FNLDIESPNFKQTVPQLGDKKKLLDLSYKNVSFF 357 Query: 349 ---HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405 +KL+ E+ + +L + L +PK IE +DNS+ G V +VV + Sbjct: 358 KRERLDQYEKLNPELKTERLLNKMKEDLRLNVLPKHIECFDNSNFQGKYPVSAIVVFKDA 417 Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465 K YR FN+ V+ +D A M + RR+ +++ S P Sbjct: 418 KPSKKDYRHFNVKT--VEGPNDFATMEEAVFRRYKRMLDEG--------------SSLPQ 461 Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525 ++I+DGGKGQLSAA LK L +E+++T+I IAK + E ++ L L+ R Sbjct: 462 LIIIDGGKGQLSAALKSLKTLGIESKVTVIGIAKRLE-----ELYYPGDQYPLYLDKRSE 516 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 L IQ LRDEAHRF IT HR +R K + L++I GIG LL +F +VK I + Sbjct: 517 TLKIIQHLRDEAHRFGITFHRNQRSRKTFQTELEQIPGIGRTSAEKLLVNFKSVKKIKEA 576 Query: 585 SPETLASIEGISKKIACKIYNHFH 608 S E L + ++ K A + +F+ Sbjct: 577 SKEQLMEV--VNTKQAEAVLAYFN 598 >gi|88801846|ref|ZP_01117374.1| excinuclease ABC, C subunit [Polaribacter irgensii 23-P] gi|88782504|gb|EAR13681.1| excinuclease ABC, C subunit [Polaribacter irgensii 23-P] Length = 598 Score = 468 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 181/625 (28%), Positives = 297/625 (47%), Gaps = 52/625 (8%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + +P PGVYQ D ++Y+GKA NL+KR+ SY + + ++++I +I+ Sbjct: 7 LQIKTLPNEPGVYQYFDKNEVIIYIGKAKNLKKRVGSYFSKTHENGKTKVLVTKIVSIKH 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE +ALLLE N+IK+ KPR+NILL+DDK++P+I I K + P ++ R Sbjct: 67 IVVETETDALLLENNLIKKHKPRYNILLKDDKTYPWICI-KKERFPRIFMTRRVIKDGSE 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175 YFGPF S+ V ++ ++ + LR+C +V + + CL + +K C G C G Sbjct: 126 YFGPFTSIKTVRVLLDLIKELYPLRTCNFDLSYQNVSEGKHKVCLEYHLKNCKGACEGLE 185 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 + Y + E + + G +K M K ++E A +++L L + Q+ + Sbjct: 186 TESHYNNSIKEIRNIIKGNFKESLDKFQEMMFLFAEKMEFEEAQKIKEKLNLLGNYQSKS 245 Query: 236 DSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 I N +D FS+ ++ G + T +K T+ ++L F+ + Sbjct: 246 TIINPAINNVDVFSIISDETHGYANFLKISNGAIIQSHTTEIKKKLAETDKELLELFIVE 305 Query: 293 FYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 I + + +K+TVP G+K++I+E + NA Sbjct: 306 VRQRFNSISPEIYTPFKVDVGE------------SLKVTVPILGDKKRIVELSERNAKYY 353 Query: 352 HTQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405 ++L + + I+ K L P+ IE +DNS+I G V VV + Sbjct: 354 KLEQLKQVQIVDPDRHVKRIMAQMKKDLRLTVEPRHIECFDNSNIQGTHPVAACVVFKDG 413 Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465 K +YR +N+ V DD M V+ RR+ +L++ ++ L P Sbjct: 414 KPSKKEYRHYNIKT--VVGPDDFGSMEEVVFRRYKRLLEEKQPL--------------PQ 457 Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525 ++I+DGGKGQLS+ L+ L + +I II IAK + E ++ L L+ + Sbjct: 458 LIIVDGGKGQLSSGLKSLELLGLRGKIAIIGIAKRLE-----EIYYPDDPIPLYLDKKSE 512 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 L Q LR+EAHRF IT HR +R K A S L+EI +G LL+ F + K + + Sbjct: 513 TLKITQYLRNEAHRFGITFHRNKRSKTAVKSELEEIPNVGVQTITTLLRKFKSAKRVKEA 572 Query: 585 SPETLASIEGISKKIACKIYNHFHK 609 S E L +E I A K+Y+++HK Sbjct: 573 SLEDL-KVE-IGHARAMKVYDYYHK 595 >gi|297624197|ref|YP_003705631.1| excinuclease ABC subunit C [Truepera radiovictrix DSM 17093] gi|297165377|gb|ADI15088.1| excinuclease ABC, C subunit [Truepera radiovictrix DSM 17093] Length = 618 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 181/610 (29%), Positives = 296/610 (48%), Gaps = 35/610 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y G V+YVGKA NL+ R++SY + + + ++ + F VT + Sbjct: 9 LPTKPGCYLFHAPGGEVIYVGKAVNLRSRVRSYFSATAA-QKAQLIRNRAERLEFIVTKS 67 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 EVEAL+LEAN+IKR KP +N+LL+DDKS+P++ +T + P L R +YFGP+ Sbjct: 68 EVEALILEANLIKRFKPHYNVLLKDDKSYPFLKLT-REAYPMLLFTRRVLKDGATYFGPY 126 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + AV K + F LR + + R +PCL F + RC PC +S E Y + V Sbjct: 127 PNPGAVRKVQELVGAIFPLRQNSGVPLQKRKKPCLRFHMGRCLAPCIDNVSEEAYAKVVR 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND----SIYNR 241 + + FL G E++ M A ++D+E A ++RDRL AL + ++ + + Sbjct: 187 QVRAFLEGDVAGTAEQLESEMRAAAARQDFELARLYRDRLQALQRLTGYDSDVTRASEDD 246 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK-PCP 300 +D + N A +Q G+ G FL ++ A+IL F+ +Y P Sbjct: 247 LDFLGVAQAGNFAMVQLFQMRRGRVVGRDKRFLTNAEGASPAEILERFMADYYGQAMQVP 306 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH--RSHTQKLST 358 +L+ +E + + ++ G +V++ VP++G+K +++ A NAH L Sbjct: 307 PLVLVPQEIDL-DVWSAFLSERAGKRVELRVPQRGDKVELMGMAERNAHTGLEAELALLE 365 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 +K+ L P RIE +D S++MG V +VV K++YRK + Sbjct: 366 RRGEAPGVKELQALVGLESAPYRIEGFDISNLMGTHTVASIVVFEGGRARKSEYRK--MR 423 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + DD M + RRF+ + ++ PD++++DGGKGQLSA Sbjct: 424 ITGLTRPDDFYAMHQAVYRRFTGALADK--------------LPVPDLLLIDGGKGQLSA 469 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ LK +E + ++ +AK E + +++ P L + +RDEAH Sbjct: 470 ARRALKDAGLE--LPLLGLAKK------QETIIREGAPEILVPETHPALRLLINIRDEAH 521 Query: 539 RFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 R A+ +RK+R S LD+I GIGP R+ LL F ++ + + + LA I G+ + Sbjct: 522 RTAVGFNRKQRGAAMTRSVLDDIPGIGPARRDALLARFSSIDELKSAGVDELARIPGMGR 581 Query: 598 KIACKIYNHF 607 A + F Sbjct: 582 VAAEAVVAFF 591 >gi|71153186|sp|Q8CPL4|UVRC_STAES RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|329730005|gb|EGG66396.1| excinuclease ABC, C subunit [Staphylococcus epidermidis VCU144] gi|329736181|gb|EGG72453.1| excinuclease ABC, C subunit [Staphylococcus epidermidis VCU028] Length = 594 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 176/613 (28%), Positives = 286/613 (46%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D +V+YVGKA L+ R++SY H + T ++ +I N F VT + Sbjct: 15 VPLEPGCYLMKDRNDQVIYVGKAKRLRNRLRSYFTGA-HDAKTTRLVGEIRNFEFIVTSS 73 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L R G YFGP+ Sbjct: 74 ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKHPRLLVTRTVKKNSGKYFGPY 132 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + ++T L R + R C + + CL + I +C GPC ++ EKY + Sbjct: 133 PNAYSAQETKKLLDRIYPFRKCDNMP----DKLCLYYHIGQCMGPCVYDVDLEKYAQMTK 188 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E FL+G + + + MN+A+ + D+E A +RD + + ++ + + Sbjct: 189 EITDFLNGEDKTILHHLEDRMNKASEQLDFEQAKEYRDMIQHIHNLTKKQKIMSSDNTIR 248 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G + P+ Sbjct: 249 DVFGYSVSKGWMCVQVFFVRQGNMIKRDATMIPLQQTEEEEFYTFIGQFYSLNQHLLPKE 308 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358 + + + ++ + + K I P +G K+ +I A NA Sbjct: 309 VHVPKNLDKDIIQSVVDTK-------IVQPVRGAKKDMINLANHNAEVQLDNKFELIARD 361 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ ++ + P RIE +DNS+I G V MV + K YRK+ + Sbjct: 362 ESRTIKAIEELGERMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPHKKDYRKYKIK 420 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++++ PD++I+DGGKG ++ Sbjct: 421 T--VEGPDDYKSMREVVRRRYTRVLNEG--------------LPLPDLIIVDGGKGHMNG 464 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 VL+ +L ++ I + + K K E + E + L Y + R++DE Sbjct: 465 VMDVLENELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R+K S LD+I+GIG RK LL++FG++K + +S + L G+ Sbjct: 522 HRFAITFHRQTRQKTGLKSVLDDIDGIGTKRKTSLLRTFGSIKKMKEASFDELRQA-GLP 580 Query: 597 KKIACKIYNHFHK 609 +K+A + N Sbjct: 581 EKVAKNLQNALQN 593 >gi|27467757|ref|NP_764394.1| excinuclease ABC subunit C [Staphylococcus epidermidis ATCC 12228] gi|27315301|gb|AAO04436.1|AE016746_226 excinuclease ABC subunit C [Staphylococcus epidermidis ATCC 12228] Length = 600 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 176/613 (28%), Positives = 286/613 (46%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D +V+YVGKA L+ R++SY H + T ++ +I N F VT + Sbjct: 21 VPLEPGCYLMKDRNDQVIYVGKAKRLRNRLRSYFTGA-HDAKTTRLVGEIRNFEFIVTSS 79 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L R G YFGP+ Sbjct: 80 ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKHPRLLVTRTVKKNSGKYFGPY 138 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + ++T L R + R C + + CL + I +C GPC ++ EKY + Sbjct: 139 PNAYSAQETKKLLDRIYPFRKCDNMP----DKLCLYYHIGQCMGPCVYDVDLEKYAQMTK 194 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E FL+G + + + MN+A+ + D+E A +RD + + ++ + + Sbjct: 195 EITDFLNGEDKTILHHLEDRMNKASEQLDFEQAKEYRDMIQHIHNLTKKQKIMSSDNTIR 254 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G + P+ Sbjct: 255 DVFGYSVSKGWMCVQVFFVRQGNMIKRDATMIPLQQTEEEEFYTFIGQFYSLNQHLLPKE 314 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358 + + + ++ + + K I P +G K+ +I A NA Sbjct: 315 VHVPKNLDKDIIQSVVDTK-------IVQPVRGAKKDMINLANHNAEVQLDNKFELIARD 367 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ ++ + P RIE +DNS+I G V MV + K YRK+ + Sbjct: 368 ESRTIKAIEELGERMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPHKKDYRKYKIK 426 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++++ PD++I+DGGKG ++ Sbjct: 427 T--VEGPDDYKSMREVVRRRYTRVLNEG--------------LPLPDLIIVDGGKGHMNG 470 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 VL+ +L ++ I + + K K E + E + L Y + R++DE Sbjct: 471 VMDVLENELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 527 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R+K S LD+I+GIG RK LL++FG++K + +S + L G+ Sbjct: 528 HRFAITFHRQTRQKTGLKSVLDDIDGIGTKRKTSLLRTFGSIKKMKEASFDELRQA-GLP 586 Query: 597 KKIACKIYNHFHK 609 +K+A + N Sbjct: 587 EKVAKNLQNALQN 599 >gi|329734437|gb|EGG70750.1| excinuclease ABC, C subunit [Staphylococcus epidermidis VCU045] Length = 594 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 176/613 (28%), Positives = 287/613 (46%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D +V+YVGKA L+ R++SY H + T ++ +I N F VT + Sbjct: 15 VPLEPGCYLMKDRNDQVIYVGKAKRLRNRLRSYFTGA-HDAKTTRLVGEIRNFEFIVTSS 73 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L R G YFGP+ Sbjct: 74 ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKHPRLLVTRTVKKNSGKYFGPY 132 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + ++T L R + R C + + CL + I +C GPC ++ EKY + Sbjct: 133 PNAYSAQETKKLLDRIYPFRKCDNMP----DKLCLYYHIGQCMGPCVYDVDLEKYAQMTK 188 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E FL+G + + + MN+A+ + D+E A +RD + + ++ + + Sbjct: 189 EITDFLNGEDKTILHHLEDRMNKASEQLDFEQAKEYRDMIQHIHNLTKKQKIMSSDNTIR 248 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G + + P+ Sbjct: 249 DVFGYSVSKGWMCVQVFFVRQGNMIKRDATMIPLQQTEEEEFYIFIGQFYSLNQHLLPKE 308 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358 + + + ++ + + K I P +G K+ +I A NA Sbjct: 309 VHVPKNLDKDIIQSVVDTK-------IVQPVRGAKKDMINLANHNAEVQLDNKFELIARD 361 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ ++ + P RIE +DNS+I G V MV + K YRK+ + Sbjct: 362 ESRTIKAIEELGERMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPHKKDYRKYKIK 420 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++++ PD++I+DGGKG ++ Sbjct: 421 T--VEGPDDYKSMREVVRRRYTRVLNEG--------------LPLPDLIIVDGGKGHMNG 464 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 VL+ +L ++ I + + K K E + E + L Y + R++DE Sbjct: 465 VMDVLENELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R+K S LD+I+GIG RK LL++FG++K + +S + L G+ Sbjct: 522 HRFAITFHRQTRQKTGLKSVLDDIDGIGTKRKTSLLRTFGSIKKMKEASFDELRQA-GLP 580 Query: 597 KKIACKIYNHFHK 609 +K+A + N Sbjct: 581 EKVAKNLQNALQN 593 >gi|160933337|ref|ZP_02080725.1| hypothetical protein CLOLEP_02182 [Clostridium leptum DSM 753] gi|156867214|gb|EDO60586.1| hypothetical protein CLOLEP_02182 [Clostridium leptum DSM 753] Length = 628 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 176/614 (28%), Positives = 302/614 (49%), Gaps = 24/614 (3%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY M + + ++Y+GKA L+ R+ Y NH ++ M+SQ+++ + +T Sbjct: 15 LPAAPGVYLMKNASNEIIYIGKAKALKNRVSQYFGSPKNHPPKVRKMVSQVDHFDYILTD 74 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EAL+LE ++IK+ P++NILL+DDK + YI +T K +++ + Y GP Sbjct: 75 SEFEALVLECSLIKQHTPKYNILLKDDKGYHYIKVTPK-PYRRIFEAKQKLNDGAEYIGP 133 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSEKYME 182 + S +V+++++ ++ F L +C+ + R RPCL + IK+C PC G++S E+Y Sbjct: 134 YTSSFSVKQSVDEARKIFKLPTCSRKFPQEIGRGRPCLNYFIKQCCAPCRGKLSEEEYEG 193 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240 +V EA +FL GG+ + + + MN+A ++E A RDR++A+ I + Sbjct: 194 YVDEALEFLKGGSVVSVKDMTQQMNEAAENLEFERAARIRDRISAVKRITAKQKVVATKV 253 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 + A F F R + + FL+Q+Y + Sbjct: 254 REQDVVAMAQAAGAAAHACVVVFRFSGGRLCDQEEFMLGEIADGKTTRAEFLQQYYAQRT 313 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P + L E E L ++ G VK+TVP++GE+ +++ NA Q+ Sbjct: 314 VPPQVTLDGEVEGKEALRQWLSEKAGRSVKLTVPQKGEQAHLVDMCRRNASEKLAQQAGR 373 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 L + + L P+ IE YD S++ G V MV +K+ YRKF + Sbjct: 374 TGREMGALDELGRLLGLAQPPEYIEAYDISNLAGSGNVAGMVAFENGRPLKSAYRKFKIK 433 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + QDD A M+ V+ RR + + ++ F PD+++LDGGKG ++A Sbjct: 434 G--FEGQDDYASMQEVISRRLQEYQEKKD--------TGEGFGRLPDLILLDGGKGHVAA 483 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 + VL+ + +I + + K K + G + +N + +++DE H Sbjct: 484 VRPVLEAFGL--QIPLFGMVKDDKHRTRA---IARDGGEIAINSSRQAFTLVSQIQDEVH 538 Query: 539 RFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAI HR+ RK+ A S L I GIGP R + LL+SF T+K I+++ + L +++ Sbjct: 539 RFAIGYHRQTRKRTALSSSLTSIPGIGPSRAKALLKSFKTIKNIAQAELKELEQAPSMNQ 598 Query: 598 KIACKIYNHFHKNT 611 A +Y++FH + Sbjct: 599 PAAQAVYDYFHPAS 612 >gi|282876406|ref|ZP_06285273.1| excinuclease ABC, C subunit [Staphylococcus epidermidis SK135] gi|281295431|gb|EFA87958.1| excinuclease ABC, C subunit [Staphylococcus epidermidis SK135] Length = 594 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 176/613 (28%), Positives = 286/613 (46%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D +V+YVGKA L+ R++SY H + T ++ +I N F VT + Sbjct: 15 VPLEPGCYLMKDRNNQVIYVGKAKRLRNRLRSYFTGA-HDAKTTRLVGEIRNFEFIVTSS 73 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L R G YFGP+ Sbjct: 74 ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKHPRLLVTRTVKKNSGKYFGPY 132 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + ++T L R + R C + + CL + I +C GPC ++ EKY + Sbjct: 133 PNAYSAQETKKLLDRIYPFRKCDNMP----DKLCLYYHIGQCMGPCVYDVDLEKYAQMTK 188 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E FL+G + + + MN+A+ + D+E A +RD + + ++ + + Sbjct: 189 EITDFLNGEDKTILHHLEDRMNKASEQLDFEQAKEYRDMIQHIHNLTKKQKIMSSDNTIR 248 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G + P+ Sbjct: 249 DVFGYSVSKGWMCVQVFFVRQGNMIKRDATMIPLQQTEEEEFYTFIGQFYSLNQHLLPKE 308 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358 + + + ++ + + K I P +G K+ +I A NA Sbjct: 309 VHVPKNLDKDIIQSVVDTK-------IVQPVRGAKKDMINLANHNAEVQLDNKFELIARD 361 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ ++ + P RIE +DNS+I G V MV + K YRK+ + Sbjct: 362 ESRTIKAIEELGERMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPHKKDYRKYKIK 420 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++++ PD++I+DGGKG ++ Sbjct: 421 T--VEGPDDYKSMREVVRRRYTRVLNEG--------------LPLPDLIIVDGGKGHMNG 464 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 VL+ +L ++ I + + K K E + E + L Y + R++DE Sbjct: 465 VMDVLENELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R+K S LD+I+GIG RK LL++FG++K + +S + L G+ Sbjct: 522 HRFAITFHRQTRQKTGLKSVLDDIDGIGTKRKTSLLRTFGSIKKMKEASFDELRQA-GLP 580 Query: 597 KKIACKIYNHFHK 609 +K+A + N Sbjct: 581 EKVAKNLQNALQN 593 >gi|228476249|ref|ZP_04060951.1| excinuclease ABC subunit C [Staphylococcus hominis SK119] gi|228269652|gb|EEK11154.1| excinuclease ABC subunit C [Staphylococcus hominis SK119] Length = 594 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 177/614 (28%), Positives = 289/614 (47%), Gaps = 43/614 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D +++YVGKA L+ R++SY H + T ++S+I N F VT + Sbjct: 15 VPFEPGCYLMKDRNDQIIYVGKAKRLRNRLRSYFTGA-HDAKTTRLVSEIRNFEFIVTSS 73 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L R G YFGP+ Sbjct: 74 ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKHPRLLVTRTVKKGTGKYFGPY 132 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + ++T L R + R C + + CL + I +C GPC ++ +KY + Sbjct: 133 PNAYSAQETKKLLDRIYPFRKCDNMP----DKLCLYYHIGQCMGPCVYDVDQQKYAQMTR 188 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E FL+G + + + M A+ K D+E A +RD + + ++ + + Sbjct: 189 EITDFLNGEDKTILHNLETRMLDASEKLDFERAKEYRDLIQHIHNLTKKQKIMSSDNTIR 248 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K CIQ F G + P+ Sbjct: 249 DVFGYSVSKGWMCIQVFFIRQGNMIQRDATMIPLQQTEEEEFYTFIGQFYSLNQHILPKE 308 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS----T 358 + + + ++ + + K I P +G K+++++ A NA + K Sbjct: 309 VHVPKNLDKDIIHSVVDTK-------IVQPARGTKKEMVDLANHNAEVALENKFQLIAKD 361 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ ++ + P RIE +DNS+I G V MV + K YRK+ + Sbjct: 362 ESRTIKAIEELGERMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPDKKGYRKYKIK 420 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 VK DD MR V+ RR+++++ PD++I+DGGKG +S Sbjct: 421 T--VKGPDDYKSMREVVRRRYTRVLNEG--------------LPLPDLIIVDGGKGHMSG 464 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 VL+ +L ++ I + + K K E + E + L Y + R++DE Sbjct: 465 VIDVLENELGLD--IPVAGLRKNDKHQTS-ELLYGANAEVVPLKKNSQAFYLLHRIQDEV 521 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R+K S LD + GIG RK LL++FG++K + +S E L + G+ Sbjct: 522 HRFAITFHRQTRQKTGLQSVLDTVEGIGSKRKTKLLRTFGSIKKMKEASIEDLKAA-GLP 580 Query: 597 KKIACKIYNHFHKN 610 K++A + ++ Sbjct: 581 KRVAENLQYALKED 594 >gi|302035972|ref|YP_003796294.1| excinuclease ABC subunit C [Candidatus Nitrospira defluvii] gi|300604036|emb|CBK40368.1| Excinuclease ABC subunit C [Candidatus Nitrospira defluvii] Length = 602 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 184/597 (30%), Positives = 309/597 (51%), Gaps = 28/597 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 + +P PG Y + +LYVGKA L R++SY ++ T + ++++I ++ Sbjct: 9 KLDHLPGQPGCYLFRNAKREILYVGKAAVLADRVRSYFQRGSDQTPKTAVLVNEIADLET 68 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE+N+IKR +PRFNI+LRDDK +PY+ + K P L R Sbjct: 69 IVTRSELEALILESNLIKRHRPRFNIVLRDDKQYPYLRLPIKENFPRLSIVRRVQKDGAL 128 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 Y+GP+ A+ +T+ +++ F L +C + R C+ F+IKRC PCTG S ++Y Sbjct: 129 YYGPYTPAGALRETLKVIRKAFPLATCEIEIDGRADRACIEFEIKRCMAPCTGNQSRDEY 188 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DS 237 + V + ++FL G + L + + +M +A +E++E A R+RL + Sbjct: 189 HQIVKQVRQFLEGRDRELLDSLREDMERAAEREEFEEAARLRNRLFNVERTLEKQRITQV 248 Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D L A +Q F G G FF ++S++ +++ + Q Y + Sbjct: 249 STTDQDVIGLARQGTAADLQLLFVRGGLLIGRKDFFWPQSADSSDEELVRSAIEQLYNKE 308 Query: 298 -PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P+ +LL +E L+E + G V++ P++G K +++ A NA + L Sbjct: 309 GQPPKELLLPTTLDEAPLIERWLSGKRGDSVRLLAPERGTKHQLVLLAEENAAAAIADHL 368 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 E + + + L +P+RIE +D S+IMG +V +VV + K+ YRKF Sbjct: 369 RNEALDRQATAELKRLLRLDAVPRRIEGFDISNIMGNQSVASLVVWEDGEAKKSDYRKFR 428 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + V+ +D A M+ + RR+ + PD++++DGG GQL Sbjct: 429 IQT--VEGANDFASMQEAVMRRY----------------GATEDLARPDLILIDGGLGQL 470 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYFIQRLRD 535 SAA LK++ +++I I+ +AK R E+ F + +VL P + +QR+RD Sbjct: 471 SAALEGLKQVG-QDQIPIMGLAK--ARGEKDERIFLPGRKNPIVLRPTSPATHLVQRIRD 527 Query: 536 EAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 EAHRFA+T HRK R KA S LD+I GIG +R++ LL+ FG+++ ++ ++ + L S Sbjct: 528 EAHRFALTYHRKLRGKALLSSELDQIAGIGTIRRKRLLKQFGSLQRVATATDDELRS 584 >gi|222474994|ref|YP_002563409.1| excinuclease ABC subunit C (uvrC) [Anaplasma marginale str. Florida] gi|255002974|ref|ZP_05277938.1| excinuclease ABC subunit C [Anaplasma marginale str. Puerto Rico] gi|222419130|gb|ACM49153.1| excinuclease ABC subunit C (uvrC) [Anaplasma marginale str. Florida] Length = 613 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 215/609 (35%), Positives = 343/609 (56%), Gaps = 32/609 (5%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 GVY+ML G VLYVGKA +L+KR++SY + N + RI M+ I + VT +E EAL Sbjct: 32 GVYKMLGANGLVLYVGKAKDLKKRLRSYYNFNQMSDRILAMVGHITELDVIVTQSEAEAL 91 Query: 71 LLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFGPFASVD 129 LLEA +IK LKP++NI++RDDK +PYIL++ KH+ P + K+R G +GPF S Sbjct: 92 LLEAQLIKTLKPKYNIIMRDDKFYPYILLS-KHEYPRIVKYRGRKEAGLGKCYGPFISSL 150 Query: 130 AVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKK 189 V+ I++L++ F LRSC+D+ F R RPC+ ++++ CS PCT +IS E Y + VH A K Sbjct: 151 VVKLVISALRKAFQLRSCSDNFFASRDRPCIEYEMRNCSAPCTRKISEEDYAKSVHMAHK 210 Query: 190 FLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA---ALSHIQNHNDSIYNRMDCFS 246 L+G + L+ ++ +M + + DYESA+++RDRL ++ + + D S Sbjct: 211 VLTGKSKELQRELFDSMRKFSDNLDYESAMVYRDRLQALKSIQECVSFQTEMSCDADFVS 270 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLS 306 +Y C+Q F G + G+ +F+ + + + +L F+ Q Y+D P + + Sbjct: 271 IYGRSGTYCLQVISFRGGISYGSQPYFVDDGNYESESDVLGMFMLQVYSD--PPGRVYVD 328 Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366 E++ ++ + + KV I K E+ K + A +A + ++L + L Sbjct: 329 CESDYCEVINAALEELLTRKVDILTAKSHEELKFLRLARNSAMEALNRRLRDKA-LPAEL 387 Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426 ++ + F LP+ P+RIE+YDNSHI G G MVV G++G ++ +YRKF + V D Sbjct: 388 EELAELFGLPNPPERIEVYDNSHISGTHPFGVMVVCGKDGLLRKEYRKFKIQT--VLNGD 445 Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486 D +MM VL RRFS PS PD V++DGG+G +S+A VL L Sbjct: 446 DYSMMHEVLFRRFS-----------------EESPSVPDFVLIDGGRGHISSAIQVLGDL 488 Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546 I +AKG R+AG E F++ G + L+ ++ +++++RDEAHRFAIT+HR Sbjct: 489 G----IPFACMAKGSNRNAGEEVFYLPDGRKICLDPDSKLMLYMRKIRDEAHRFAITSHR 544 Query: 547 KRRKKAAYS-PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 R + S L +I G+G R+R L+ FG++ + R+ + ++ + GIS K+A +IY Sbjct: 545 SSRDRTLSSAVLCDIPGVGSARRRALITYFGSIDGVKRARTDEISKVPGISIKLAQRIYA 604 Query: 606 HFHKNTSHT 614 + + + Sbjct: 605 YLKQGMAQP 613 >gi|251810594|ref|ZP_04825067.1| excinuclease ABC subunit C [Staphylococcus epidermidis BCM-HMP0060] gi|251805754|gb|EES58411.1| excinuclease ABC subunit C [Staphylococcus epidermidis BCM-HMP0060] Length = 600 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 176/613 (28%), Positives = 286/613 (46%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D +V+YVGKA L+ R++SY H + T ++ +I N F VT + Sbjct: 21 VPLEPGCYLMKDRNNQVIYVGKAKRLRNRLRSYFTGA-HDAKTTRLVGEIRNFEFIVTSS 79 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L R G YFGP+ Sbjct: 80 ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKHPRLLVTRTVKKNSGKYFGPY 138 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + ++T L R + R C + + CL + I +C GPC ++ EKY + Sbjct: 139 PNAYSAQETKKLLDRIYPFRKCDNMP----DKLCLYYHIGQCMGPCVYDVDLEKYAQMTK 194 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E FL+G + + + MN+A+ + D+E A +RD + + ++ + + Sbjct: 195 EITDFLNGEDKTILHHLEDRMNKASEQLDFEQAKEYRDMIQHIHNLTKKQKIMSSDNTIR 254 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G + P+ Sbjct: 255 DVFGYSVSKGWMCVQVFFVRQGNMIKRDATMIPLQQTEEEEFYTFIGQFYSLNQHLLPKE 314 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358 + + + ++ + + K I P +G K+ +I A NA Sbjct: 315 VHVPKNLDKDIIQSVVDTK-------IVQPVRGAKKDMINLANHNAEVQLDNKFELIARD 367 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ ++ + P RIE +DNS+I G V MV + K YRK+ + Sbjct: 368 ESRTIKAIEELGERMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPHKKDYRKYKIK 426 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++++ PD++I+DGGKG ++ Sbjct: 427 T--VEGPDDYKSMREVVRRRYTRVLNEG--------------LPLPDLIIVDGGKGHMNG 470 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 VL+ +L ++ I + + K K E + E + L Y + R++DE Sbjct: 471 VMDVLENELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 527 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R+K S LD+I+GIG RK LL++FG++K + +S + L G+ Sbjct: 528 HRFAITFHRQTRQKTGLKSVLDDIDGIGTKRKTSLLRTFGSIKKMKEASFDELRQA-GLP 586 Query: 597 KKIACKIYNHFHK 609 +K+A + N Sbjct: 587 EKVAKNLQNALQN 599 >gi|293366872|ref|ZP_06613548.1| excision endonuclease subunit UvrC [Staphylococcus epidermidis M23864:W2(grey)] gi|291319173|gb|EFE59543.1| excision endonuclease subunit UvrC [Staphylococcus epidermidis M23864:W2(grey)] Length = 600 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 176/613 (28%), Positives = 287/613 (46%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D +V+YVGKA L+ R++SY H + T ++ +I N F VT + Sbjct: 21 VPLEPGCYLMKDRNDQVIYVGKAKRLRNRLRSYFTGA-HDAKTTRLVGEIRNFEFIVTSS 79 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L R G YFGP+ Sbjct: 80 ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKHPRLLVTRTVKKNSGKYFGPY 138 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + ++T L R + R C + + CL + I +C GPC ++ EKY + Sbjct: 139 PNAYSAQETKKLLDRIYPFRKCDNMP----DKLCLYYHIGQCMGPCVYDVDLEKYAQMTK 194 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E FL+G + + + MN+A+ + D+E A +RD + + ++ + + Sbjct: 195 EITDFLNGEDKTILHHLEDRMNKASEQLDFEQAKEYRDMIQHIHNLTKKQKIMSSDNTIR 254 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G + + P+ Sbjct: 255 DVFGYSVSKGWMCVQVFFVRQGNMIKRDATMIPLQQTEEEEFYIFIGQFYSLNQHLLPKE 314 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358 + + + ++ + + K I P +G K+ +I A NA Sbjct: 315 VHVPKNLDKDIIQSVVDTK-------IVQPVRGAKKDMINLANHNAEVQLDNKFELIARD 367 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ ++ + P RIE +DNS+I G V MV + K YRK+ + Sbjct: 368 ESRTIKAIEELGERMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPHKKDYRKYKIK 426 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++++ PD++I+DGGKG ++ Sbjct: 427 T--VEGPDDYKSMREVVRRRYTRVLNEG--------------LPLPDLIIVDGGKGHMNG 470 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 VL+ +L ++ I + + K K E + E + L Y + R++DE Sbjct: 471 VMDVLENELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 527 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R+K S LD+I+GIG RK LL++FG++K + +S + L G+ Sbjct: 528 HRFAITFHRQTRQKTGLKSVLDDIDGIGTKRKTSLLRTFGSIKKMKEASFDELRQA-GLP 586 Query: 597 KKIACKIYNHFHK 609 +K+A + N Sbjct: 587 EKVAKNLQNALQN 599 >gi|314936674|ref|ZP_07844021.1| excinuclease ABC subunit C [Staphylococcus hominis subsp. hominis C80] gi|313655293|gb|EFS19038.1| excinuclease ABC subunit C [Staphylococcus hominis subsp. hominis C80] Length = 594 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 177/614 (28%), Positives = 289/614 (47%), Gaps = 43/614 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D +++YVGKA L+ R++SY H + T ++S+I N F VT + Sbjct: 15 VPFEPGCYLMKDRNDQIIYVGKAKRLRNRLRSYFTGA-HDAKTTRLVSEIRNFEFIVTSS 73 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L R G YFGP+ Sbjct: 74 ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKHPRLLVTRTVKKGTGKYFGPY 132 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + ++T L R + R C + + CL + I +C GPC ++ +KY + Sbjct: 133 PNAYSAQETKKLLDRIYPFRKCDNMP----DKLCLYYHIGQCMGPCVYDVDQQKYAQMTR 188 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E FL+G + + + M A+ K D+E A +RD + + ++ + + Sbjct: 189 EITDFLNGEDKTILHNLETRMLDASEKLDFERAKEYRDLIQHIRNLTKKQKIMSSDNTIR 248 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K CIQ F G + P+ Sbjct: 249 DVFGYSVSKGWMCIQVFFIRQGNMIQRDATMIPLQQTEEEEFYTFIGQFYSLNQHILPKE 308 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS----T 358 + + + ++ + + K I P +G K+++++ A NA + K Sbjct: 309 VHVPKNLDKDIIHSVVDTK-------IVQPARGTKKEMVDLANHNAEVALENKFQLIAKD 361 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ ++ + P RIE +DNS+I G V MV + K YRK+ + Sbjct: 362 ESRTIKAIEELGERMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPDKKGYRKYKIK 420 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 VK DD MR V+ RR+++++ PD++I+DGGKG +S Sbjct: 421 T--VKGPDDYKSMREVVRRRYTRVLNEG--------------LPLPDLIIVDGGKGHMSG 464 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 VL+ +L ++ I + + K K E + E + L Y + R++DE Sbjct: 465 VIDVLENELGLD--IPVAGLRKNDKHQTS-ELLYGANAEVVPLKKNSQAFYLLHRIQDEV 521 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R+K S LD + GIG RK LL++FG++K + +S E L + G+ Sbjct: 522 HRFAITFHRQTRQKTGLQSVLDTVEGIGSKRKTKLLRTFGSIKKMKEASIEDLKAA-GLP 580 Query: 597 KKIACKIYNHFHKN 610 K++A + ++ Sbjct: 581 KRVAENLQYALKED 594 >gi|300770941|ref|ZP_07080818.1| excision endonuclease subunit UvrC [Sphingobacterium spiritivorum ATCC 33861] gi|300762214|gb|EFK59033.1| excision endonuclease subunit UvrC [Sphingobacterium spiritivorum ATCC 33861] Length = 603 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 180/628 (28%), Positives = 314/628 (50%), Gaps = 49/628 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 +++P PGVYQ D ++Y+GKA +L+ R+ SY + N + + ++ +IN I F Sbjct: 9 ELKRIPHKPGVYQYFDKQDELIYIGKAKDLRNRVGSYFVNDNQLSGKTRVLVRKINRIAF 68 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T+ TE++A LLE N+IK+ KP++N++L+DDK++P+I+I + + P ++ R Sbjct: 69 TIVDTEIDAWLLENNLIKKHKPKYNVMLKDDKTYPWIVI-KQERFPRVFWTRKYIRDGSR 127 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175 YFGP+ASV + ++ ++ F LR+C D++ + + CL +QI C GPC G Sbjct: 128 YFGPYASVGMMHTVLDVIRELFPLRTCNLSLTDDNIRTGKFKVCLEYQIGNCKGPCEGYQ 187 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 S E Y + + + K L+G + ++ + ++ A ++E A + +L L + Q+ + Sbjct: 188 SEEDYDQNLDDIKDILNGKIAVVTNRLKQQIDAAVGALNFELAHALKSKLDKLDYYQSKS 247 Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 +D FS+ ++N A + G T T +K + T+ ++L+ + + Sbjct: 248 TVVNSSITNVDVFSIASDQNYAFVNFLKVMNGVIIQTQTLEMKRRLDETDVELLALAIPE 307 Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA---- 348 ++ + +K TVPK GEKRK+++ +L N Sbjct: 308 IRNRFKSTSREIIVPFDMDIE---------GDDNIKFTVPKLGEKRKLLDLSLKNVAYFK 358 Query: 349 --HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 H ++L+ ++ + IL K + +P+ IE +DNS+I G V +VV + Sbjct: 359 KERLLHYERLNPDLKTERILTQMQKDLRMNVLPQHIECFDNSNIQGNFPVSAIVVFKDAK 418 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 K YR FN+ V +D A M + RR+ +L+ ++ L P + Sbjct: 419 PSKKDYRHFNVKT--VVGPNDFATMEEAVFRRYRRLLDEDQPL--------------PQL 462 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526 +I+DGGKGQL AA L+ L +E ++T+I IAK + E ++ L L+ + Sbjct: 463 IIIDGGKGQLGAALKSLRLLGIEKQVTVIGIAKRLE-----ELYYPGDQYPLYLDKKSET 517 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 L IQ LRDEAHRF IT HR +R + + S L+ I G+G LL++F +V+ + +S Sbjct: 518 LKIIQHLRDEAHRFGITFHRNQRSRKTFVSELENIPGVGKTSVDKLLKTFKSVRKVKEAS 577 Query: 586 PETLASIEGISKKIACKIYNHFHKNTSH 613 E L + ++ K + +F +T Sbjct: 578 DEELKKV--LNLKQVKALREYFQDDTPD 603 >gi|24214866|ref|NP_712347.1| excinuclease ABC subunit C [Leptospira interrogans serovar Lai str. 56601] gi|59799067|sp|Q8F479|UVRC_LEPIN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|24195885|gb|AAN49365.1| excinuclease ABC subunit C [Leptospira interrogans serovar Lai str. 56601] Length = 609 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 181/619 (29%), Positives = 295/619 (47%), Gaps = 31/619 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + + PG Y G VLYVGKA NL KR++SY+ N+ + + +I ++ + Sbjct: 13 KIKNLGASPGCYLWKSKKGEVLYVGKAKNLDKRVRSYLKENHPDVKTKVLQREIFDLDWI 72 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T TE EAL+LEA +IK+ PRFN+ L+DDK +PYI ++ P +Y R Y Sbjct: 73 ATGTEKEALILEATLIKKHNPRFNVRLKDDKKYPYICVSLSEPYPMVYVTRKLKDNGDRY 132 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 FGP++ V + +T++ + R F +R RPCL F + RC GPC G I E Y Sbjct: 133 FGPYSDVKSTRETLDIILRIFPVRKTRQVLPLPRPRRPCLNFDMGRCLGPCQGNIPVEDY 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + + +FL G +L + M+ A+ + D+E A +RD L + + + + Sbjct: 193 KVIIDQVIQFLEGRKESLVSDLNIKMSNASERLDFEKAARYRDMLQRIQNFREKQTVVSL 252 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D ++ + G+ +F ++ ++ N++IL F R +Y + Sbjct: 253 EGGDEDVIGFARKQDEGQVILLEIRGGRLETKKSFPIQGVLDAENSEILGAFFRDYYLNA 312 Query: 298 P-CPENILLSEEAEETSLLEISFF-KQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P I + + ++ + I ++ G++ KI PK G+KR +++ A NA +++ Sbjct: 313 SLVPPCIFIPADIQDEVIPVIDVLQEKTGFRPKIKFPKGGDKRSLLKIAEKNAELGLSER 372 Query: 356 L--STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 L + LK+ + F+L +P IE YD SH G V V+ E K YR Sbjct: 373 LLATHYRDQTASLKEIQEMFSLERLPHIIECYDISHFQGSQPVASGVMFVEGKPFKQGYR 432 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 K+N+ + +D M+ V+ RR ++I E +PD++++DGG Sbjct: 433 KYNIQG--YEGINDPGMIHEVISRRLQRIINEE--------------GVFPDLIVIDGGL 476 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 QL+ A + E I ++ +AK + E FF + E + +M P + ++ L Sbjct: 477 TQLTKACEAAVEAGAEG-IPMVGLAKKRE-----EIFFPGENEPFIFDMNSPGMKLLRHL 530 Query: 534 RDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDEAHRF ++ HR RR K S + E+ IG R +LLLQ F K I ++ E L + Sbjct: 531 RDEAHRFGVSHHRSRRNKETMRSLIQEVPDIGFKRSKLLLQHFSGEKKIEEATKEELLLV 590 Query: 593 EGISKKIACKIYNHFHKNT 611 GI + +A KI K Sbjct: 591 PGIGENLAEKILKQLQKKE 609 >gi|124008163|ref|ZP_01692861.1| excinuclease ABC, C subunit [Microscilla marina ATCC 23134] gi|123986411|gb|EAY26224.1| excinuclease ABC, C subunit [Microscilla marina ATCC 23134] Length = 601 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 176/628 (28%), Positives = 302/628 (48%), Gaps = 51/628 (8%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFT 61 +Q+P GVY+ D +LYVGKA NL+ R+ SY + + H + +++ QI ++ +T Sbjct: 8 LKQLPTNAGVYKFFDKNNVLLYVGKAKNLKNRVNSYFNKSAQHNRKTINLVKQIAHVDYT 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V +E +ALLLE N+IK +P++NILL+DDK++PYILIT+ P L R +G + Sbjct: 68 VVNSEFDALLLENNLIKNYQPKYNILLKDDKTYPYILITN-EPFPKLVVTRKLEKNKGRF 126 Query: 122 FGPFASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176 +GPF ++ A+ + ++ RT L +++ +++ + CL + + C PC G S Sbjct: 127 YGPFTNLKAMNAIVELIRELYTIRTCNLHLSKENIQQNKFKLCLEYHLGNCQAPCEGLQS 186 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 E Y++ + AK + G H +K + M K ++E A + +LA+L Q+ + Sbjct: 187 EEDYLKDLEHAKHIMKGNIHIVKTYLKEQMLAYAEKLEFEKAESQKQKLASLDKFQSKSL 246 Query: 237 S----IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 D FS+ ++N + + G T + + + T +IL+ Sbjct: 247 VVNPNKVIDTDVFSIISDENYSYVNFLKIKNGAIIHTQSIEIAKKLDETEEEILTLVAFN 306 Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA---- 348 +++ + T+PK G+K+K++ + N Sbjct: 307 LRDTIGSNAPEIITNLP----------LNISDDRFTNTIPKIGDKKKLLSLSQKNVLYYK 356 Query: 349 --HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 + +++L++ + + +P+ IE +DNS+I G V MV Sbjct: 357 KEKIQQRLLRQGKDKSRVVLEELQQVLRMKELPRHIECFDNSNIQGIYPVASMVFFRNGF 416 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 K YR FN+ V DD A M+ ++ RR+ +L+ + L P + Sbjct: 417 PYKKGYRHFNIKT--VVGPDDFASMKEIVHRRYKRLLYEKAEL--------------PQL 460 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526 +++DGGKGQLSAA LK+L++ ITII IAK + E +F + L ++ + P Sbjct: 461 IVIDGGKGQLSAACEALKELDLYGEITIIGIAKKLE-----EIYFPEDSIPLHISKKSPA 515 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 L +Q++RDEAHRFAI HR +R + +S L+ I G+G LL+ F TV ++++S Sbjct: 516 LKLLQKVRDEAHRFAIEFHRNKRSNDSLHSELEAIEGVGEKTITSLLRHFKTVNNVAQAS 575 Query: 586 PETLASIEGISKKIACKIYNHFHKNTSH 613 + +A + G K A I +F Sbjct: 576 TQEIAKVVG--KAKANLIRAYFESKEQE 601 >gi|194337093|ref|YP_002018887.1| excinuclease ABC, C subunit [Pelodictyon phaeoclathratiforme BU-1] gi|229558462|sp|B4SCR5|UVRC_PELPB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|194309570|gb|ACF44270.1| excinuclease ABC, C subunit [Pelodictyon phaeoclathratiforme BU-1] Length = 627 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 172/611 (28%), Positives = 287/611 (46%), Gaps = 50/611 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVT 63 +P PGVYQ + +GRV+YVGKA NL+ R++SY + + + +++ I + +T Sbjct: 23 TLPPSPGVYQFRNSSGRVIYVGKAKNLRNRVRSYFRNQQQLYGKTLVLVTHIADFEVIIT 82 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +EVEAL+LE NMIK LKPR+N+ L+DDK++PY++IT+ P + R ++FG Sbjct: 83 SSEVEALILENNMIKELKPRYNVNLKDDKTYPYLVITN-EPFPRILISRQRRKDGSTWFG 141 Query: 124 PFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 P+ + ++ + F +RSC +++ + + CL + I +C GPC G S E Sbjct: 142 PYTESRQLHSILDLIGSIFPVRSCKFRLSEENIATKKYKVCLDYHIHKCKGPCEGRQSEE 201 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y+ + E + L G + + M + +E A + +L +L + Sbjct: 202 EYLLMIAEITRLLKGKTSTMIRSLTSAMQLFARELKFERAAEIKMQLESLKRYAERQKVV 261 Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D F++ + C G+ G+ ++ + T++ + + + ++Y Sbjct: 262 AGDGLDRDVFAVATGEEDGCGVVFKIREGKLLGSQRIYMNNVTGETDSGLQARVMEKYYL 321 Query: 296 D--KPCPENILLSEEAEETSL--------LEISFFKQYGYKVKITVPKQGEKRKIIEQAL 345 + + P+ ILL E + Q ++ VP+ GEK ++E Sbjct: 322 ETLELLPDEILLQESLGADEEETLRALFSEKEREEAQEKKNIRFLVPQIGEKAHLVEMCR 381 Query: 346 INAHRSHTQKLSTEISHQMILKD------FTKKFALPHIPKRIEIYDNSHIMGCSAVGCM 399 NA + L + ++ + LP +P+RIE +DNSH+ G V M Sbjct: 382 QNARHHLEEYLIQKQKRGEAAREHYGLTALKELLHLPKLPQRIECFDNSHLQGTDYVSSM 441 Query: 400 VVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS 459 + + K YRKF N + DD A M V+ RR+S + S Sbjct: 442 ICFEKGKPKKADYRKF--KINSFEGSDDYAAMEEVIRRRYSGSL--------------SS 485 Query: 460 FPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALV 519 WPD++++DGGKGQ++ A L L + I II +AK + E F + + Sbjct: 486 KLPWPDLIVVDGGKGQVNIAFQTLNALGLS--IPIIGLAKRIE-----EIFTPQARDPFN 538 Query: 520 LNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTV 578 L P L +Q++RDEAHRFAIT HRK R + + L I GIG LL+ FG+V Sbjct: 539 LPKTSPALKLLQQMRDEAHRFAITYHRKLRSERMLQTELTTIAGIGEKTAFKLLERFGSV 598 Query: 579 KMISRSSPETL 589 +++++ E L Sbjct: 599 DAVAQATLEEL 609 >gi|45657622|ref|YP_001708.1| excinuclease ABC subunit C [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|59799053|sp|Q72RI9|UVRC_LEPIC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|45600862|gb|AAS70345.1| nucleotide excision repair subunit C [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 609 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 181/619 (29%), Positives = 295/619 (47%), Gaps = 31/619 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + + PG Y G VLYVGKA NL KR++SY+ N+ + + +I ++ + Sbjct: 13 KIKNLGASPGCYLWKSKKGEVLYVGKAKNLDKRVRSYLKENHPDVKTKVLQREIFDLDWI 72 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T TE EAL+LEA +IK+ PRFN+ L+DDK +PYI ++ P +Y R Y Sbjct: 73 ATGTEKEALILEATLIKKHNPRFNVRLKDDKKYPYICVSLSEPYPMVYVTRKLKDNGDRY 132 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 FGP++ V + +T++ + R F +R RPCL F + RC GPC G I E Y Sbjct: 133 FGPYSDVKSTRETLDIILRIFPVRKTRQVLPLPRPRRPCLNFDMGRCLGPCQGNIPVEDY 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + + +FL G +L + M+ A+ + D+E A +RD L + + + + Sbjct: 193 KVIIDQVIQFLEGRKESLVSDLNIKMSNASERLDFEKAARYRDMLQRIQNFREKQTVVSL 252 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D ++ + G+ +F ++ ++ N++IL F R +Y + Sbjct: 253 EGGDEDVIGFARKQDEGQVILLEIRGGRLETKKSFPIQGVLDAENSEILGAFFRDYYLNA 312 Query: 298 P-CPENILLSEEAEETSLLEISFF-KQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P I + + ++ + I ++ G++ KI PK G+KR +++ A NA +++ Sbjct: 313 SLVPPCIFIPADIQDEVIPVIDVLQEKTGFRPKIKFPKGGDKRSLLKIAEKNAELGLSER 372 Query: 356 L--STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 L + LK+ + F+L +P IE YD SH G V V+ E K YR Sbjct: 373 LLATHYRDQTASLKEIQEMFSLERLPHIIECYDISHFQGSQPVASGVMFVEGKPFKQGYR 432 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 K+N+ + +D M+ V+ RR ++I E +PD++++DGG Sbjct: 433 KYNIRG--YEGINDPGMIHEVISRRLQRIINEE--------------GVFPDLIVIDGGL 476 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 QL+ A + E I ++ +AK + E FF + E + +M P + ++ L Sbjct: 477 TQLTKACEAAVEAGAEG-IPMVGLAKKRE-----EIFFPGENEPFIFDMNSPGMKLLRHL 530 Query: 534 RDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDEAHRF ++ HR RR K S + E+ IG R +LLLQ F K I ++ E L + Sbjct: 531 RDEAHRFGVSHHRSRRNKETMRSLIQEVPDIGFKRSKLLLQHFSGEKKIEEATKEELLLV 590 Query: 593 EGISKKIACKIYNHFHKNT 611 GI + +A KI K Sbjct: 591 PGIGENLAEKILKQLQKKE 609 >gi|33865780|ref|NP_897339.1| excinuclease ABC subunit C [Synechococcus sp. WH 8102] gi|81574546|sp|Q7U6U0|UVRC_SYNPX RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|33632950|emb|CAE07761.1| Excinuclease ABC subunit C (UvrC) [Synechococcus sp. WH 8102] Length = 652 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 187/630 (29%), Positives = 298/630 (47%), Gaps = 29/630 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFT 61 +++P PG Y M D R+LYVGK+ +L+ R++SY S + + RI M Q+ I F Sbjct: 15 LKEIPPEPGCYLMRDGEDRILYVGKSKSLRSRVRSYFRSRHDLSPRIRLMTRQVCEIEFI 74 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ--G 119 VT +E EAL LE+N+IK +P FN+LL+DDK +PY+ IT P ++ R Sbjct: 75 VTDSEAEALALESNLIKNHQPHFNVLLKDDKKYPYLCITWSEAYPRIFITRRRRFRSPLD 134 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++GP+ V + +T+ ++R F LR + RT CL + I RC G C +I+SE Sbjct: 135 RFYGPYVDVGLLRRTLFLVKRVFPLRQRPRPLHPDRT--CLNYSIGRCPGVCQEKITSED 192 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + + G + L+ + MN+ + D+ESA RD+L L + Sbjct: 193 YHRTLRKVAMVFQGRSDELQRLLDEQMNRYAERLDFESAARVRDQLQGLDQLTADQKMSL 252 Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D +L + LA +Q G+ G + + IL + + Y+ Sbjct: 253 PDSSVSRDVLALACDDRLAAVQLFQMRAGKLVGRLGYTADASA-LAPGLILQRVIEEHYS 311 Query: 296 DKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 P +L+ + LLE +Q KV+I PKQ +K +IE NA Sbjct: 312 QVDAVEVPPELLVQHALPQQQLLEDWLTEQRERKVQIHCPKQRQKADLIELVQRNAEFEL 371 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + + +D + +P P+RIE YD SHI G AV VV + K Y Sbjct: 372 LRAKQGQEQQALATEDLAQLLEMPTPPRRIEGYDISHIQGSDAVASQVVFIDGLPAKQHY 431 Query: 413 RKFNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENL--------NFHPKKQEYSFPS 462 RK+ + + +++ D M ++ RRF + + + + Q Sbjct: 432 RKYKIRSSSIQSGHSDDFMAMAEIMRRRFRRWARAKADGVDVGALRHKGGSALQTDGLND 491 Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522 WPDVV++DGGKGQLSA L++L++ + + S+AK + E F + + L Sbjct: 492 WPDVVMIDGGKGQLSAVMEALRELDLHEDLNVCSLAKQRE-----EVFLPGESQPLESEP 546 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMI 581 + ++RLRDEAHRFA++ HR++R + S L +I G+GP R + LL F ++ I Sbjct: 547 DQLGVALLRRLRDEAHRFAVSFHRQQRGERMKRSRLSDIPGVGPKRVKDLLAHFHSIDAI 606 Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNT 611 +S + L+ G+ +A I+ FH Sbjct: 607 QMASVDLLSKAPGVGTALARDIHGFFHPAE 636 >gi|325290076|ref|YP_004266257.1| Excinuclease ABC subunit C [Syntrophobotulus glycolicus DSM 8271] gi|324965477|gb|ADY56256.1| Excinuclease ABC subunit C [Syntrophobotulus glycolicus DSM 8271] Length = 587 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 192/616 (31%), Positives = 303/616 (49%), Gaps = 47/616 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PGVY M + R++YVGKA L+ R+KSY H + H + ++SQI + + VT + Sbjct: 11 LPAKPGVYLMKNNKNRIIYVGKAKILKNRVKSYFHGS-HDQKTQQLVSQIADFEYIVTSS 69 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E+EAL+LE N+IK+ PR+NI+L+DDK++PY+L+T K P + R+ + G YFGP+ Sbjct: 70 ELEALVLECNLIKKYYPRYNIMLKDDKTYPYLLLT-SEKHPRILVTRNVNRKMGKYFGPY 128 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + A ++T L R F LR C PCL F I +C GPC +++ E+Y + + Sbjct: 129 PNATAAKETARLLNRVFPLRKCTHIPHE----PCLYFHIGQCLGPCINQLNPEQYQDVLD 184 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 + FL G ++ + MN A+ +E+A +RD + A+ I + N Sbjct: 185 KITSFLKGNQKDIIRWLEEKMNSASANLQFENAKEYRDLIQAIQTISEKQNITLNDFRNR 244 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D S + L CIQ +F G+ F + FL Q+Y +K + Sbjct: 245 DFVSYRFSDELLCIQIFYFRQGKLVARDNFLFPY--YEEPEEAFVSFLLQYYDNKNKIPD 302 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 + E + L + + +TVPK+G+ +II+ A NA + + Sbjct: 303 EICLPENKSPLL---------NHLLPVTVPKRGKTLEIIKLATNNAETVLQERTSLEKIK 353 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + L+ + + P+ IE +D S I G + VG MV + ++ YRKFN+ Sbjct: 354 TEKTLLALQGLGELLDID-PPQIIEAFDISSISGTNIVGGMVRFVQGKPCRSHYRKFNID 412 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + V DD + M+ V+ RR+ +L+ PD+++LDGGKGQ++A Sbjct: 413 SSSV--NDDTSSMKQVVFRRYDRLLSEN--------------HQIPDLILLDGGKGQITA 456 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A L L + I + + K + + G + L IQ++++E H Sbjct: 457 ALNSLDVLGLS--IPLAGMVKNEEHTTR--TLINADGAEIDLAKYPDAFRLIQQIQEEVH 512 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR++R K S LD I G+GP RKR LL + G++ I +SS E I G+ + Sbjct: 513 RFAITFHRQKRIKDLTSSELDLIPGVGPKRKRDLLLNLGSLANIKQSSVEDFRKI-GLPE 571 Query: 598 KIACKIYNHFHKNTSH 613 IA IY++FH T Sbjct: 572 NIALAIYSYFHGETGS 587 >gi|255010267|ref|ZP_05282393.1| excinuclease ABC subunit C [Bacteroides fragilis 3_1_12] Length = 620 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 172/616 (27%), Positives = 305/616 (49%), Gaps = 38/616 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PG+YQ L+ G ++YVGKA NL++R+ SY + + ++S+I +IR+ V Sbjct: 31 NLPEKPGIYQYLNAEGTIIYVGKAKNLKRRVYSYFSKEHQPGKTRVLVSKIADIRYIVVN 90 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E +ALLLE N+IK+ KPR+N+LL+DDK++P I + + P ++K R SY+GP Sbjct: 91 SEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRVFKTRRIIRNGSSYYGP 149 Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ ++ ++ ++ + LR+C +++ + CL + IK C+GPC G S E+ Sbjct: 150 YSHAPSMHAVLDLIKHLYPLRTCSLNLSPENIRAGKFNVCLEYHIKNCAGPCIGLQSQEE 209 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y++ + E K+ L G + + + + M + + +E A +++ A + + ++ ++ + Sbjct: 210 YLKNISEIKEILKGNTQEISKMLYQQMQELAAEMKFEEAQKVKEKYALIENYRSKSEVVS 269 Query: 240 NRMDCFSLYHNKNL----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + + ++ + A I G TF K T ++L+ + + Sbjct: 270 SVLHNIDVFSIEEDGEKSAFINYLHITNGAINQAFTFEYKKKLNETKEELLTLGIIEMRE 329 Query: 296 D-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K I++ + E Q G K K+ ++ + A Sbjct: 330 RYKSASREIIVPFDIEMELNNVTFTIPQRGDKKKLLELSLLNVKQYKADRMKQAE----- 384 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 KL+ E ++K+ ++ L +P +IE +DNS+I G AV VV + KN YRK Sbjct: 385 KLNPEQRSMRLMKEIQQELHLDRLPMQIECFDNSNIQGTDAVAACVVFKKAKPSKNDYRK 444 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 +N+ V DD A M+ V+ RR+ ++++ E PD++I DGGKG Sbjct: 445 YNIKT--VVGADDYASMKEVVRRRYQRVLEEE--------------SPLPDLIITDGGKG 488 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q+ + V+++L ++ I I +AK K E F + + + P+ +++++ Sbjct: 489 QMEVVRQVMEELQLD--IPIAGLAKDRKHRTS-EVLFGFPPQTIGIKQHSPLFRLLEQIQ 545 Query: 535 DEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR +R K S LD I GIG K LLL+ F +VK I +S E +A++ Sbjct: 546 DEVHRFAITFHRDKRSKRQVSSALDSIKGIGEKTKTLLLKEFKSVKRIKEASMEEVATV- 604 Query: 594 GISKKIACKIYNHFHK 609 I + A + + Sbjct: 605 -IGESKAKIVKEGLNN 619 >gi|67459304|ref|YP_246928.1| excinuclease ABC subunit C [Rickettsia felis URRWXCal2] gi|75536266|sp|Q4UL10|UVRC_RICFE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|67004837|gb|AAY61763.1| Excinuclease ABC subunit C [Rickettsia felis URRWXCal2] Length = 642 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 232/648 (35%), Positives = 345/648 (53%), Gaps = 55/648 (8%) Query: 1 MSSEQM--PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNI 58 + S+ + PE GVY+M D+ +V+YVGKA NL+KR+ +Y ++ ++ MI+ + Sbjct: 11 IKSKLIDAPERCGVYRMFDVNKQVIYVGKAKNLKKRLTNY-IKSDLDNKTLRMIANTCFL 69 Query: 59 RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118 +++T +EVEALLLEA +IK+ +P+FNILL+DDKSFP+I + H P L K+R + Sbjct: 70 EYSITNSEVEALLLEAQLIKKFQPKFNILLKDDKSFPFIKLRLDHDFPQLLKYRGKTLNS 129 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 G +FGPFAS V T+ LQ+ F LRSC D+ F RTRPCL ++IKRC PC G+I+ E Sbjct: 130 GKFFGPFASSTEVNTTLTELQKIFKLRSCTDNYFNSRTRPCLQYEIKRCYAPCVGKINKE 189 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y + V + K FL G L+E +++ M + + + +E A RDR+ ALS++Q Sbjct: 190 DYRDLVAQVKDFLQGRTKELQENLSKKMEELSSQMRFEEAAEIRDRIKALSYVQLKAGVS 249 Query: 239 --YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 D ++ C++ + GQ G +F + ST ++L YFL QFY Sbjct: 250 DIVKDADIIAIVEKNGHYCVEVFLYRAGQACGNIPYFPTSTENSTKEEVLEYFLLQFYQK 309 Query: 297 KPCPENILLSEEAEETS-LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P I+++ E + ++E K+ I +P G K K+++ A INA S Q Sbjct: 310 QQVPAEIIINHEINDKENVIEAIKKINNITKLNIIIPISGGKAKLVQNAAINALFSLEQY 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L +Q I+ + + F L I +RIEIYDNSHI G AVG MVV G+ GF K +YR F Sbjct: 370 LKKFAKNQEIMLEIKELFGLSEISERIEIYDNSHIQGKFAVGVMVVAGKAGFDKKEYRVF 429 Query: 416 N--------------------------------LHPNDVKTQDDCAMMRMVLERRFSQLI 443 + + P D DD M+R VL RR ++L Sbjct: 430 SLSSRNSSLSSHASPLSSRNLIAGSSSYFLDPVVKPRDDIVGDDYEMLRQVLTRRLTRLK 489 Query: 444 KNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR 503 P ++I+DGG+G L + V+ K E I + ++KG R Sbjct: 490 NE--------------PHKLPSLMIIDGGRGHLGVVKEVMDKF--EMNIPFVCMSKGVDR 533 Query: 504 SAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEING 562 +AG+E+F + E L+ PI+ ++Q LRDEAH FAI HR R +A S LD+I G Sbjct: 534 NAGLEQFHMTGKEVFTLDKNLPIMKYLQILRDEAHNFAIKNHRLGRSRAIKLSSLDDIEG 593 Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 IG RK+ LL FG+ K + ++ + L + GI+K +A I+ HK+ Sbjct: 594 IGETRKKALLHYFGSYKAVCDATIDELTKVNGINKSLAEMIFRTLHKS 641 >gi|298528048|ref|ZP_07015452.1| excinuclease ABC, C subunit [Desulfonatronospira thiodismutans ASO3-1] gi|298511700|gb|EFI35602.1| excinuclease ABC, C subunit [Desulfonatronospira thiodismutans ASO3-1] Length = 605 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 179/610 (29%), Positives = 282/610 (46%), Gaps = 37/610 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRF 60 +S P PGVY M D R++YVGKA NL+ R+ SY S+ + + M+ ++ + + Sbjct: 6 NSSDFPRDPGVYLMKDEQNRIIYVGKAKNLRSRVSSYFRSSRDPSPKTRVMLGRVLQVDY 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T +E EALLLEA++IK+ +PR+NI+LRDDK + + PAL R + Sbjct: 66 ITTTSEKEALLLEASLIKKHRPRYNIVLRDDKQYVLFRLDKSRPYPALELTRSARRDGSV 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGPF S A +T+ + R F+LR C FR+R RPCL I+RC GPC ++S+E+Y Sbjct: 126 YFGPFTSAAAARETMKVINRLFYLRKCGHKKFRNRVRPCLQHFIRRCPGPCCLDVSTEEY 185 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + + FLSG + L + + ++M +A+ + D+E A + RD++ A+ ++ Sbjct: 186 SREIRRLEMFLSGRSAELIKGMEKDMQEASRELDFEKAALLRDQIEAVKQTTKSQSVVFP 245 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQIL---SYFLRQFY 294 MD F+ + + I F G+ + FF + ++ + L QFY Sbjct: 246 GTGDMDVFAPVYVQGGMGIGVLFVRQGKVLDSKNFFWPEHHPENDQELQDTLASLLSQFY 305 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 +L E L + KV++ + + ++ A N + Sbjct: 306 GPDSFIPEKILLPEKIHDPALLHLLMEYRKGKVRLVGARGESLKGLLNIARQNCEQHA-- 363 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 L P+RIE D SH G + +V K YR Sbjct: 364 ----RDRRDAGTPFLAGVMGLEREPERIECIDVSHHAGRNTRMGVVTFVAGEPHKKDYRI 419 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 +NL V DD MR ++R + S WPD++++DGGKG Sbjct: 420 YNLPS--VSPGDDYQAMREFIKR------------------RSRSSSPWPDLLLVDGGKG 459 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAG---MEKFFVKKGEALVLNMRDPILYFIQ 531 QL Q L+ E + SIAK R+ G + + + L L P L ++Q Sbjct: 460 QLGTVQKALQDAGQEGLFALASIAKAETRARGGAQDQVYLPGRKYPLSLKPASPELLYLQ 519 Query: 532 RLRDEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 R+RDEAHRFA+ + R R+K+ S L++I G+GP + L + FG+++ I +S E L Sbjct: 520 RIRDEAHRFALGSMRNSLRRKSLQSDLEKIPGLGPKKVEALWKHFGSLQSILGASREELM 579 Query: 591 SIEGISKKIA 600 + G + A Sbjct: 580 QVPGFGPETA 589 >gi|325281346|ref|YP_004253888.1| UvrABC system protein C [Odoribacter splanchnicus DSM 20712] gi|324313155|gb|ADY33708.1| UvrABC system protein C [Odoribacter splanchnicus DSM 20712] Length = 601 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 187/624 (29%), Positives = 314/624 (50%), Gaps = 48/624 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 ++P PGVYQ D +G ++Y+GKA NL+ R+ SY++ +N +++ ++++I ++R+ Sbjct: 11 KISELPSSPGVYQYFDSSGVIIYIGKAKNLKNRVLSYLNQSNQSNKTRILVNKITDLRYI 70 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V +E +ALLLE N+IK+ KPR+NILL+DDKS+P+I I K P ++ R Y Sbjct: 71 VVNSEQDALLLENNLIKKYKPRYNILLKDDKSYPWICI-KKEPYPRVFLTRRFVHDGSEY 129 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEIS 176 FGP+ S I+ ++ F LR+C +V+ +R + CL + I C GPC G+I Sbjct: 130 FGPYTSGKFAHVLISLIKSLFKLRTCKLALNTKAVYNNRFKVCLEYHIGNCLGPCIGKIQ 189 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 E+Y EF+ + + L G ++ + + R MN +E A ++ L A+ + Q+ + Sbjct: 190 EEEYDEFISQVRNILKGNLSSVIQVMTRKMNSYAESLHFEEANRMKEALEAIKNYQSKST 249 Query: 237 S---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 + D FS ++ A + G T L+ E +L++ + + Sbjct: 250 IVRTTIHDTDVFSYLEDEKYAYVNFLRIVHGAVIQVHTVELEKKIEEDKEALLAFAIYEI 309 Query: 294 YTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----- 348 ++ + L V+ +P++G+K+++++ + N Sbjct: 310 RQLVNSNSKEIIVPFYPDVQLE----------GVQYVIPQRGDKKQLLDLSERNVSYFRL 359 Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 R + L E S ILK + LP +P R+E +DNS+I G + V VV + Sbjct: 360 DRERQRNLKKEDSSFNILKTIKLELKLPTLPHRMECFDNSNIQGTNPVASCVVFIDGKPA 419 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 K +YRKF++ V DD A M ++ RR+ +++ PD+++ Sbjct: 420 KKEYRKFHVKT--VVGADDFASMEEIIFRRYKRVLDEG--------------LELPDLIV 463 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 +DGGKGQL +A LKKL++ ++ I+ +AK + E +F + + +L L Sbjct: 464 IDGGKGQLHSAVNSLKKLDLYGKVPILGLAKQME-----EIYFPEDKDPYLLAKNSMALK 518 Query: 529 FIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 + +RDEAHRF IT HRK R+K+ S L +I GIG + +LL F +V I + S E Sbjct: 519 TLMHIRDEAHRFGITFHRKLREKSQINSILGDIKGIGEATETILLHEFKSVSNIKQKSIE 578 Query: 588 TLASIEGISKKIACKIYNHFHKNT 611 LA + I KK A I+ +FH+ T Sbjct: 579 ELAKV--IGKKKAQLIHEYFHQET 600 >gi|56808206|ref|ZP_00365982.1| COG0322: Nuclease subunit of the excinuclease complex [Streptococcus pyogenes M49 591] gi|94988536|ref|YP_596637.1| excinuclease ABC subunit C [Streptococcus pyogenes MGAS9429] gi|94990413|ref|YP_598513.1| excinuclease ABC subunit C [Streptococcus pyogenes MGAS10270] gi|94992359|ref|YP_600458.1| excinuclease ABC subunit C [Streptococcus pyogenes MGAS2096] gi|94994335|ref|YP_602433.1| excinuclease ABC subunit C [Streptococcus pyogenes MGAS10750] gi|209559373|ref|YP_002285845.1| excinuclease ABC subunit C [Streptococcus pyogenes NZ131] gi|306827426|ref|ZP_07460712.1| excision endonuclease subunit UvrC [Streptococcus pyogenes ATCC 10782] gi|119367845|sp|Q1JBZ4|UVRC_STRPB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|119367846|sp|Q1JLX6|UVRC_STRPC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|119367847|sp|Q1JH25|UVRC_STRPD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|119367848|sp|Q1J6U4|UVRC_STRPF RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|226698805|sp|B5XLD8|UVRC_STRPZ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|94542044|gb|ABF32093.1| excinuclease ABC subunit C [Streptococcus pyogenes MGAS9429] gi|94543921|gb|ABF33969.1| Excinuclease ABC subunit C [Streptococcus pyogenes MGAS10270] gi|94545867|gb|ABF35914.1| Excinuclease ABC subunit C [Streptococcus pyogenes MGAS2096] gi|94547843|gb|ABF37889.1| Excinuclease ABC subunit C [Streptococcus pyogenes MGAS10750] gi|209540574|gb|ACI61150.1| Putative excinuclease ABC [Streptococcus pyogenes NZ131] gi|304430371|gb|EFM33394.1| excision endonuclease subunit UvrC [Streptococcus pyogenes ATCC 10782] Length = 598 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 171/624 (27%), Positives = 290/624 (46%), Gaps = 43/624 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D G ++YVGKA NL+KR++SY ++ T + ++S+I + + Sbjct: 8 KLELLPDSPGCYLHKDKEGTIIYVGKAKNLKKRVRSYFRGSHDT-KTELLVSEIVDFEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT ++ EALLLE N+I++ P++NI L+DDKS+P++ IT+ P L R G Y Sbjct: 67 VTESDTEALLLEINLIQKNMPKYNIKLKDDKSYPFLKITN-ESFPRLVITRYIKKNDGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + L R F + C + + + C + + +C + Sbjct: 126 FGPYPDSYTANEVKKLLDRIFPFKKCKNPI----NKVCFYYHLGQCCAHTICHTDKAYWD 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 + + K FL+G + + E + M A+ + +E A +RD ++ ++ ++ + Sbjct: 182 RLIDDVKHFLNGKDDKIIEDLRSKMLAASEEMAFERAAEYRDLISGIATMRTKQRVMSKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ +++ + Sbjct: 242 LQDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNLFPYYNDAEEDFLTYMGQFYQDKQHF 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ + + E +E + I K PK+GEK++++ A NA + Sbjct: 302 IPKEVFIPEAIDEELVAAIVPTKIIK-------PKRGEKKQLVALATKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +++ + + RIE +DNS+I G S V MVV + K YRK Sbjct: 355 LEKDIKKTSGAIENLGQLLRIDKPV-RIEAFDNSNIQGTSPVAAMVVFVDGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + V DD A MR VL RR+S++ K P+++I+DGG G Sbjct: 414 FKIKT--VVGPDDYASMREVLFRRYSRVKKEG--------------LQAPNLIIVDGGVG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V++K + I + + K K + F E + L R + + R++ Sbjct: 458 QVNVAKDVIEK-QLGLTIPVAGLQKNDKHQT-HDLLFGNPLEVVPLPRRSEEFFLLHRIQ 515 Query: 535 DEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFA+T HR+ RRK + S LD I+G+GP RK+LLL+ F T+ I+ ++ E + ++ Sbjct: 516 DEVHRFAVTFHRQVRRKNSFSSTLDHISGLGPKRKQLLLRHFKTITAIASATSEEIQAL- 574 Query: 594 GISKKIACKIYNHF--HKNTSHTP 615 GI K + I +KN +P Sbjct: 575 GIPKTVVEAIQQQITDNKNDRSSP 598 >gi|56416629|ref|YP_153703.1| excinuclease ABC subunit C [Anaplasma marginale str. St. Maries] gi|81359188|sp|Q5PB81|UVRC_ANAMM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|56387861|gb|AAV86448.1| excinuclease ABC subunit C [Anaplasma marginale str. St. Maries] Length = 613 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 215/609 (35%), Positives = 343/609 (56%), Gaps = 32/609 (5%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 GVY+ML G VLYVGKA +L+KR++SY + N + RI M+ I + VT +E EAL Sbjct: 32 GVYKMLGANGLVLYVGKAKDLKKRLRSYYNFNQMSDRILAMVGHITELDVIVTQSEAEAL 91 Query: 71 LLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFGPFASVD 129 LLEA +IK LKP++NI++RDDK +PYIL++ KH+ P + K+R G +GPF S Sbjct: 92 LLEAQLIKTLKPKYNIIMRDDKFYPYILLS-KHEYPRIVKYRGRKEAGLGKCYGPFISSL 150 Query: 130 AVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKK 189 V+ I++L++ F LRSC+D+ F R RPC+ ++++ CS PCT +IS E Y + VH A K Sbjct: 151 VVKLVISALRKAFQLRSCSDNFFASRDRPCIEYEMRNCSAPCTRKISEEDYAKSVHMAHK 210 Query: 190 FLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA---ALSHIQNHNDSIYNRMDCFS 246 L+G + L+ ++ +M + + DYESA+++RDRL ++ + + D S Sbjct: 211 VLTGKSKELQRELFDSMRKFSDNLDYESAMVYRDRLQALKSIQECVSFQTEMSCDADFVS 270 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLS 306 +Y C+Q F G + G+ +F+ + + + +L F+ Q Y+D P + + Sbjct: 271 IYGRSGTYCLQVISFRGGISYGSQPYFVDDGNYESESDVLGMFMLQVYSD--PPGRVYVD 328 Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366 E++ ++ + + KV I K E+ K + A +A + ++L + L Sbjct: 329 CESDYCEVINAALERLLTRKVDILTAKSHEELKFLRLARNSAMEALNRRLRDKA-LPAEL 387 Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426 ++ + F LP+ P+RIE+YDNSHI G G MVV G++G ++ +YRKF + V D Sbjct: 388 EELAELFGLPNPPERIEVYDNSHISGTHPFGVMVVCGKDGLLRKEYRKFKIQT--VLNGD 445 Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486 D +MM VL RRFS PS PD V++DGG+G +S+A VL L Sbjct: 446 DYSMMHEVLFRRFS-----------------EESPSVPDFVLIDGGRGHISSAIQVLGDL 488 Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546 I +AKG R+AG E F++ G + L+ ++ +++++RDEAHRFAIT+HR Sbjct: 489 G----IPFACMAKGSNRNAGEEVFYLPDGRKICLDPDSKLMLYMRKIRDEAHRFAITSHR 544 Query: 547 KRRKKAAYS-PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 R + S L +I G+G R+R L+ FG++ + R+ + ++ + GIS K+A +IY Sbjct: 545 SSRDRTLSSAVLCDIPGVGSARRRALITYFGSIDGVKRARTDEISKVPGISIKLAQRIYA 604 Query: 606 HFHKNTSHT 614 + + + Sbjct: 605 YLKQGMAQP 613 >gi|21910285|ref|NP_664553.1| excinuclease ABC subunit C [Streptococcus pyogenes MGAS315] gi|28895862|ref|NP_802212.1| excinuclease ABC subunit C [Streptococcus pyogenes SSI-1] gi|25453317|sp|Q8K7L7|UVRC_STRP3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|21904480|gb|AAM79356.1| putative excinuclease ABC (subunit C) [Streptococcus pyogenes MGAS315] gi|28811112|dbj|BAC64045.1| putative excinuclease ABC subunit C [Streptococcus pyogenes SSI-1] Length = 598 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 171/624 (27%), Positives = 290/624 (46%), Gaps = 43/624 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D G ++YVGKA NL+KR++SY ++ T + ++S+I + + Sbjct: 8 KLELLPDSPGCYLHKDKEGTIIYVGKAKNLKKRVRSYFRGSHDT-KTELLVSEIVDFEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT ++ EALLLE N+I++ P++NI L+DDKS+P++ IT+ P L R G Y Sbjct: 67 VTESDTEALLLEINLIQKNMPKYNIKLKDDKSYPFLKITN-ESFPRLVITRYIKKNDGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + L R F + C + + + C + + +C + Sbjct: 126 FGPYPDSYTANEVKKLLDRIFPFKKCKNPI----NKVCFYYHLGQCCAHTICHTDKVYWD 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 + + K FL+G + + E + M A+ + +E A +RD ++ ++ ++ + Sbjct: 182 RLIDDVKHFLNGKDDKIIEDLRSKMLAASEEMAFERAAEYRDLISGIATMRTKQRVMSKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ +++ + Sbjct: 242 LQDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNLFPYYNDAEEDFLTYMGQFYQDKQHF 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ + + E +E + I K PK+GEK++++ A NA + Sbjct: 302 IPKEVFIPEAIDEELVAAIVPTKIIK-------PKRGEKKQLVALATKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +++ + + RIE +DNS+I G S V MVV + K YRK Sbjct: 355 LEKDIKKTSGAIENLGQLLKIDKPV-RIEAFDNSNIQGTSPVAAMVVFVDGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + V DD A MR VL RR+S++ K P+++I+DGG G Sbjct: 414 FKIKT--VVGPDDYASMREVLFRRYSRVKKEG--------------LQAPNLIIVDGGVG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V++K + I + + K K + F E + L R + + R++ Sbjct: 458 QVNVAKDVIEK-QLGLTIPVAGLQKNDKHQT-HDLLFGNPLEVVPLPRRSEEFFLLHRIQ 515 Query: 535 DEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFA+T HR+ RRK + S LD I+G+GP RK+LLL+ F T+ I+ ++ E + ++ Sbjct: 516 DEVHRFAVTFHRQVRRKNSFSSTLDHISGLGPKRKQLLLRHFKTITAIASATSEEIQAL- 574 Query: 594 GISKKIACKIYNHF--HKNTSHTP 615 GI K + I +KN +P Sbjct: 575 GIPKTVVEAIQQQITDNKNDRSSP 598 >gi|227537545|ref|ZP_03967594.1| excision endonuclease subunit UvrC [Sphingobacterium spiritivorum ATCC 33300] gi|227242597|gb|EEI92612.1| excision endonuclease subunit UvrC [Sphingobacterium spiritivorum ATCC 33300] Length = 603 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 179/628 (28%), Positives = 314/628 (50%), Gaps = 49/628 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 +++P PGVYQ D ++Y+GKA +L+ R+ SY + N + + ++ +IN I F Sbjct: 9 ELKRIPHKPGVYQYFDKQDELIYIGKAKDLRNRVGSYFVNDNQLSGKTRVLVRKINRIAF 68 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T+ TE++A LLE N+IK+ KP++N++L+DDK++P+I+I + + P ++ R Sbjct: 69 TIVDTEIDAWLLENNLIKKHKPKYNVMLKDDKTYPWIVI-KQERFPRVFWTRKYIKDGSR 127 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175 YFGP+ASV + ++ ++ F LR+C D++ + + CL +QI C GPC G Sbjct: 128 YFGPYASVGMMHTVLDVIRELFPLRTCNLSLTDDNIRTGKFKVCLEYQIGNCKGPCEGYQ 187 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 S E Y + + + K L+G + ++ + ++ A ++E A + +L L + Q+ + Sbjct: 188 SEEDYDQNLDDIKDILNGKIAVVTNRLKQQIDTAVGALNFELAHALKSKLDKLDYYQSKS 247 Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 +D FS+ +++ A + G T T +K + T+ ++L+ + + Sbjct: 248 TVVNSSITNVDVFSIASDQSYAFVNFLKVMNGVIIQTQTLEMKRRLDETDVELLALAIPE 307 Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA---- 348 ++ + +K TVPK GEKRK+++ +L N Sbjct: 308 IRNRFKSASREIIVPFDMDIE---------GDDNIKFTVPKLGEKRKLLDLSLKNVAYFK 358 Query: 349 --HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 H ++L+ ++ + IL K + +P+ IE +DNS+I G V +VV + Sbjct: 359 KERLLHYERLNPDLKTERILTQMQKDLRMNVLPQHIECFDNSNIQGNFPVSAIVVFKDAK 418 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 K YR FN+ V +D A M + RR+ +L+ ++ L P + Sbjct: 419 PSKKDYRHFNVKT--VVGPNDFATMEEAVFRRYRRLLDEDQPL--------------PQL 462 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526 +I+DGGKGQL AA L+ L +E ++T+I IAK + E ++ L L+ + Sbjct: 463 IIIDGGKGQLGAALKSLRLLGIEKQVTVIGIAKRLE-----ELYYPGDQYPLYLDKKSET 517 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 L IQ LRDEAHRF IT HR +R + + S L+ I G+G LL++F +V+ + +S Sbjct: 518 LKIIQHLRDEAHRFGITFHRNQRSRKTFVSELENIPGVGKTSVDKLLKTFKSVRKVKEAS 577 Query: 586 PETLASIEGISKKIACKIYNHFHKNTSH 613 E L + ++ K + +F +T Sbjct: 578 DEELKKV--LNLKQVKALREYFQDDTPD 603 >gi|71903430|ref|YP_280233.1| excinuclease ABC subunit C [Streptococcus pyogenes MGAS6180] gi|92058699|sp|Q48TS8|UVRC_STRPM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|71802525|gb|AAX71878.1| excinuclease ABC subunit C [Streptococcus pyogenes MGAS6180] Length = 598 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 171/624 (27%), Positives = 290/624 (46%), Gaps = 43/624 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D G ++YVGKA NL+KR++SY ++ T + ++S+I + + Sbjct: 8 KLELLPDSPGCYLHKDKEGTIIYVGKAKNLKKRVRSYFRGSHDT-KTELLVSEIVDFEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT ++ EALLLE N+I++ P++NI L+DDKS+P++ IT+ P L R G Y Sbjct: 67 VTESDTEALLLEINLIQKNMPKYNIKLKDDKSYPFLKITN-ESFPRLVITRYIKKNDGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + L R F + C + + + C + + +C + Sbjct: 126 FGPYPDSYTANEVKKLLDRIFPFKKCKNPI----NKVCFYYHLGQCCAHTICHTDKAYWD 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 + + K FL+G + + E + M A+ + +E A +RD ++ ++ ++ + Sbjct: 182 RLIDDVKHFLNGKDDKIIEDLRSKMLAASEEMAFERAAEYRDLISGIATMRTKQRVMSKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ +++ + Sbjct: 242 LQDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNLFPYYNDAEEDFLTYMGQFYQDKQHF 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ + + E +E + I K PK+GEK++++ A NA + Sbjct: 302 IPKEVFIPEAIDEELVAAIVPTKIIK-------PKRGEKKQLVALATKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +++ + + RIE +DNS+I G S V MVV + K YRK Sbjct: 355 LEKDIKKTSGAIENLGQLLKIDKPV-RIEAFDNSNIQGTSPVAAMVVFVDGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + V DD A MR VL RR+S++ K P+++I+DGG G Sbjct: 414 FKIKT--VVGPDDYASMREVLFRRYSRVKKEG--------------LQAPNLIIVDGGVG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V++K + I + + K K + F E + L R + + R++ Sbjct: 458 QVNVAKDVIEK-QLGLTIPVAGLQKNDKHQT-HDLLFGNPLEVVPLPRRSEEFFLLHRIQ 515 Query: 535 DEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFA+T HR+ RRK + S LD I+G+GP RK+LLL+ F T+ I+ ++ E + ++ Sbjct: 516 DEVHRFAVTFHRQVRRKNSFSSTLDHISGLGPKRKQLLLRHFKTITAIASATSEEIQAL- 574 Query: 594 GISKKIACKIYNHF--HKNTSHTP 615 GI K + I +KN +P Sbjct: 575 GIPKTVVEAIQQQITDNKNDRSSP 598 >gi|314933343|ref|ZP_07840708.1| excinuclease ABC subunit C [Staphylococcus caprae C87] gi|313653493|gb|EFS17250.1| excinuclease ABC subunit C [Staphylococcus caprae C87] Length = 594 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 171/613 (27%), Positives = 285/613 (46%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D +V+YVGKA L+ R++SY H + T ++S+I N F VT + Sbjct: 15 VPLEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVSEIRNFEFIVTSS 73 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L R G YFGP+ Sbjct: 74 ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKHPRLIVTRTVKKGTGKYFGPY 132 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + ++T L R + R C + + CL + I +C GPC ++ +KY + Sbjct: 133 PNAYSAQETKKLLDRIYPFRKCDNMP----DKLCLYYHIGQCMGPCVYDVDLDKYAQMTK 188 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E FL+G + + + M +A+ D+E A +RD + + ++ + Sbjct: 189 EITDFLNGEDKTIIHNLESRMTKASEDLDFEQAKEYRDMIQHIHNLTKKQKIMSTDNTIR 248 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G + P+ Sbjct: 249 DVFGYNVSKGWMCVQVFFIRQGNMIKRDATMIPIQQSEEEEFYTFIGQFYSLNQHILPKE 308 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 + + + ++ + + K I P +G K+++++ A NA Sbjct: 309 VHVPKNLDKDMIYSVVDTK-------IVQPSRGAKKEMVDLANHNAEVQLENKFELIARD 361 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ ++ + P RIE +DNS+I G V MV + K YRK+ + Sbjct: 362 ESRTVKAIEELGERMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPDKKGYRKYKIK 420 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++++ PD++I+DGGKG ++ Sbjct: 421 T--VEGPDDYKSMREVVRRRYTRVLNEG--------------LPLPDLIIVDGGKGHMNG 464 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 VL+ +L ++ I + + K K E + E + L Y + R++DE Sbjct: 465 VMDVLENELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R+K S LD+++GIG RK LL++FG++K + ++ + L G+ Sbjct: 522 HRFAITFHRQTRQKTGLKSVLDDVDGIGAKRKTTLLRTFGSIKKMKEANLDDLKGA-GLP 580 Query: 597 KKIACKIYNHFHK 609 +K+A + Sbjct: 581 EKVAKNLQKALQN 593 >gi|73662958|ref|YP_301739.1| excinuclease ABC subunit C [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|92058697|sp|Q49WR3|UVRC_STAS1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|72495473|dbj|BAE18794.1| excinuclease ABC subunit C [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 595 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 169/611 (27%), Positives = 276/611 (45%), Gaps = 35/611 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D +++YVGKA L+ R++SY H + T ++ +I N F VT + Sbjct: 15 VPIEPGCYLMKDRNDQIIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVGEIRNFEFIVTSS 73 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L R G YFGP+ Sbjct: 74 ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLIVTRTVKKGSGKYFGPY 132 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + ++T L R + R + + CL + I +C GPC + EKY E Sbjct: 133 PNAYSAQETKKLLDRIYPFRK----CDKMPDKLCLYYHIGQCLGPCVYPVDLEKYAEMTK 188 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E FL+G + + + + M +++ D+E A +RD + + ++ + Sbjct: 189 EITDFLNGEDKTILHNLEQKMQESSESLDFERAKEYRDLIQHIHNLNKKQKITSSDNTIR 248 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K CIQ F G + P+ Sbjct: 249 DVFGYSISKGWMCIQVFFIRQGNMIKRDATMIPLQQTEEEEFYTFIGQFYDLNQHILPKE 308 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 + + + + + + K E L N E Sbjct: 309 VHVPKHLNKELIQSVVDTKIVQPLKGKKKDMVDLANHNAEVTLEN---KFELIAKDESRT 365 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 +++ + P RIE +DNS+I G + V MV + K YRK+ + V Sbjct: 366 VKAIEELGDVMGI-QTPIRIEAFDNSNIQGVNPVSAMVSFIDGKPNKKGYRKYKIKT--V 422 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD MR V+ RR+++++ PD++I+DGGKG +S V Sbjct: 423 DGPDDYKSMREVVRRRYTRVLNEG--------------SPLPDLIIVDGGKGHMSGVIDV 468 Query: 483 LK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 L+ +L ++ I + + K K E + ++ E + + Y +QR++DE HRFA Sbjct: 469 LENELGLD--IPVAGLRKNDKHQTS-EILYGEQAEVVPMKKNSQPFYLLQRIQDEVHRFA 525 Query: 542 ITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 IT HR+ R+K S LD ++GIG RK LL++FG++K + +S E L + G+ + +A Sbjct: 526 ITFHRQTRQKTGLQSVLDTVDGIGAKRKTKLLRTFGSIKRMKEASVEDLKN-SGLPQNVA 584 Query: 601 CKIYNHFHKNT 611 +++ N+ Sbjct: 585 ENLHHALSNNS 595 >gi|296504995|ref|YP_003666695.1| excinuclease ABC subunit C [Bacillus thuringiensis BMB171] gi|296326047|gb|ADH08975.1| excinuclease ABC subunit C [Bacillus thuringiensis BMB171] Length = 574 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 174/602 (28%), Positives = 289/602 (48%), Gaps = 43/602 (7%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D G V+YVGKA L+ R++SY + H + ++ +I + + VT + +EAL+LE Sbjct: 1 MKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSSNLEALILEL 59 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N+IK+ P++NI L+DDK++P+I IT K P L R+ +G YFGP+ + + +T Sbjct: 60 NLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPYPNAQSAHET 118 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194 L R + LR C + + CL + + +C PC E++ E+ E V E KFL+GG Sbjct: 119 KKLLDRMYPLRKCTNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVDEIIKFLNGG 174 Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHNK 251 + ++ ++ M +A+ K ++E A RD++A + I I + D F +K Sbjct: 175 HKEVRSELEIKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDRDVFGYAVDK 234 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEE 311 C+Q F G+ E + + P+ I++ + Sbjct: 235 GWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKEIVVPGSIDS 294 Query: 312 TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLSTEISHQMILK 367 + + +V+ T PK+G+K+ ++E A NA + E + Sbjct: 295 ELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERDEERTIKAVD 347 Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427 K+ + RIE +DNS+I G + V M+ + K +YRK+ + V+ DD Sbjct: 348 HLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIKT--VQGPDD 404 Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK-KL 486 MR V+ RR+++ +K PD++I+DGGKG L+AA +L+ +L Sbjct: 405 YESMREVVRRRYTRALKEN--------------SPLPDLIIIDGGKGHLAAASDILENEL 450 Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546 + I + + K K E ++L Y +QR++DE HRFAIT HR Sbjct: 451 GLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEVHRFAITFHR 507 Query: 547 KRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 + K+ S LD+I GIG RK++LL+ FG++K + +S E G+ K +A IY Sbjct: 508 QLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASIEEFVEA-GMPKNVAETIYT 566 Query: 606 HF 607 + Sbjct: 567 YL 568 >gi|149369500|ref|ZP_01889352.1| excinuclease ABC, C subunit [unidentified eubacterium SCB49] gi|149356927|gb|EDM45482.1| excinuclease ABC, C subunit [unidentified eubacterium SCB49] Length = 597 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 174/625 (27%), Positives = 298/625 (47%), Gaps = 50/625 (8%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + +P PGVYQ D ++LY+GKA NL+KR++SY + + + ++ +I +I+ Sbjct: 8 LQVSTLPSTPGVYQYYDKDDKLLYIGKAKNLKKRVQSYFNKEHDHAKTRILVRKIKSIKH 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE +ALLLE N+IK+ +P++NILL+DDK++P+I I + P ++ R Sbjct: 68 IVVETETDALLLENNLIKKYQPKYNILLKDDKTYPWICI-KNERFPRVFPTRRLIKDGSE 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175 YFGP+ + + + ++ + LR+C D + + + CL + + C GPC G Sbjct: 127 YFGPYTNFKTINALLELIKGLYPLRNCNFDLAEDKIRNGKYKVCLEYHLGNCLGPCEGLY 186 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 S + Y E + + L G + M+Q + +E A ++++ AL + Q+ + Sbjct: 187 SEKFYNENIAAIRNILKGNFKESLHLFKKQMHQFADELLFEEAQKVKEKIDALENYQSKS 246 Query: 236 DSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 ++ +D FS+ +++ A + +G + T +K + T+ ++L + + Sbjct: 247 MVVHPTITNVDVFSIISDESYAYVNYLQVSYGAIIRSHTLEIKKKLDETDKELLEMSVLE 306 Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 + + PK G+K+KI++ ++ NA Sbjct: 307 IRQRFNSLSKEIYTPFKISIETGVKMHI-----------PKVGDKKKILDLSIRNAKYYR 355 Query: 353 TQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 ++ + + I+ K L P+ IE +DNS+I G + V VV Sbjct: 356 LERFKQSKIVDPDRHEKRIMAQMKKDLRLSVEPRHIECFDNSNIQGTNPVAACVVFKNGK 415 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 K YRKF++ V+ DD A M V+ RR+ +L++ ++ L P + Sbjct: 416 PSKKDYRKFHIKT--VEGPDDFASMEEVVYRRYKRLVEEKQPL--------------PQL 459 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526 +I+DGGKGQLS++ L L + +I II IAK + E F+ L L+ + Sbjct: 460 IIIDGGKGQLSSSLKALDDLGLRGKIAIIGIAKRLE-----ELFYPDDPIPLYLDKKSET 514 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 L IQ+LR+EAHRF IT HR+ R K A + L+ I GIG LL F + K I +S Sbjct: 515 LKIIQQLRNEAHRFGITFHRQLRSKEALNTALETIPGIGEKTVIELLTKFKSHKRIGTAS 574 Query: 586 PETLASIEGISKKIACKIYNHFHKN 610 + LA + G S+ A K+ +F + Sbjct: 575 FDELAEVIGASR--AKKVKTYFQDS 597 >gi|86131052|ref|ZP_01049651.1| excinuclease ABC, C subunit [Dokdonia donghaensis MED134] gi|85818463|gb|EAQ39623.1| excinuclease ABC, C subunit [Dokdonia donghaensis MED134] Length = 598 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 178/623 (28%), Positives = 291/623 (46%), Gaps = 50/623 (8%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + +P PG+YQ D ++LYVGKA NL+KR+ SY + + RI M+ +I ++ Sbjct: 8 LQLKTLPTSPGIYQYYDKNEKLLYVGKAKNLKKRVLSYFNKTHDNGRIRTMVKKIYEMKH 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE +ALLLE ++IK +PR+N+LL+DDKS+P+I I + P ++ R Sbjct: 68 IVVETETDALLLENSLIKEYQPRYNVLLKDDKSYPWICI-KNERFPRVFPTRRLIKDGSE 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-----HRTRPCLLFQIKRCSGPCTGEI 175 YFGP+ S+ V ++ ++ + LR+C + + + + CL + + C G C + Sbjct: 127 YFGPYTSMKTVRTLLDLIKNLYKLRTCNYDLSKEKVDAGKFKVCLEYHLGNCEGACENKQ 186 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 S ++Y E + ++ + G + + M ++E A +++L L Q+ + Sbjct: 187 SEQEYHEHIEHIRQIVKGDFKDSLARFREKMKAHAEAMEFEDAQRIKEKLDILEGYQSKS 246 Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 + +D FS+ ++ + G + T LK + T+ ++L + + Sbjct: 247 TVVNPKISNVDVFSIISDEGYGYVNFLQISHGAIIKSHTLELKKQLDETDKELLELGIIE 306 Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 + G + KITVPK G+K++I+E + NA Sbjct: 307 IQQRFDHNSKEIYVPFP-----------VDLGSRFKITVPKLGDKKRILELSERNAKYYR 355 Query: 353 TQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 ++ + I+ L P+ IE +DNS+I G + V VV Sbjct: 356 MERFKQTKIVDPDRHTNRIMAQMKVDLRLSEEPRHIECFDNSNIQGTNPVAACVVFKNGK 415 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 K+ YRKFN+ V+ DD A M V+ RR+ +L+ E L P + Sbjct: 416 PSKSDYRKFNIKT--VEGPDDFASMEEVVFRRYKRLLNEGEPL--------------PQL 459 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526 +I+DGGKGQLS+ L L + +I II IAK + E F+ L L+ + Sbjct: 460 IIVDGGKGQLSSGVKALDDLGLRGKIAIIGIAKRLE-----ELFYPGDSIPLYLDKKSET 514 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 L IQ LR+EAHRF IT HR +R A + LD I GIG LL+ + +V + +S Sbjct: 515 LKIIQHLRNEAHRFGITFHRNQRSNAALGTELDTIKGIGEKTIVDLLKHYRSVSKVKTAS 574 Query: 586 PETLASIEGISKKIACKIYNHFH 608 ++L + I A IYNH+H Sbjct: 575 KKSLTEV--IGPAKATIIYNHYH 595 >gi|190571502|ref|YP_001975860.1| excinuclease ABC, C subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|229557874|sp|B3CMV5|UVRC_WOLPP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|190357774|emb|CAQ55228.1| excinuclease ABC, C subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 605 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 236/619 (38%), Positives = 354/619 (57%), Gaps = 27/619 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + P+ GVY+M+ +VLY+GKA NL+ R+ Y+ N + RI MISQ+ + Sbjct: 8 QIKSSPQSCGVYKMIGDKSKVLYIGKAKNLKSRLSDYLQFENLSERIRVMISQVIKVEIF 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-STIQGS 120 +T E+EALLLEA +IK LKP +NILLRD KS+PYI I+ KH P + K+R + Sbjct: 68 ITENEIEALLLEAQLIKSLKPSYNILLRDGKSYPYITIS-KHDYPRIAKYRGKFKKNEFH 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 Y+GPF S AV+ TI SLQ+ F LR C+D F RPCL +Q+KRCS PC +I+ + Y Sbjct: 127 YYGPFPSAAAVKNTILSLQKAFLLRVCSDQYFSSTKRPCLEYQVKRCSAPCVDKITKDDY 186 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND--SI 238 + V +A+ L G N ++ ++ M + + + +YE A ++RDRL L IQ S Sbjct: 187 CKSVKQAQDTLLGRNKEVQRQLFSTMEKCSREMNYELAAVYRDRLKFLQQIQMQPMDFSF 246 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-K 297 D FS+ +LACI F N G+ +F++ S+ +N +ILS FL Y Sbjct: 247 EEDADFFSVVREADLACIGVLSFRDKGNYGSIPYFIENCSDHSNDEILSTFLVNLYNPVN 306 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P I + + ++ ++E + + +K+ K ++R ++ N+ S QKL+ Sbjct: 307 TPPAQIYVPDFIKDKEIIEQALYALTQKSIKVLHAKNSKERDLLNFIYNNSQHSLEQKLT 366 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 ++ L++ K F+LP+IPKRIE+YDNSHI G VG M+V G+ GF+K++Y+KF + Sbjct: 367 DYRNNLEKLEELRKIFSLPNIPKRIEVYDNSHISGNQQVGVMIVAGQEGFLKSEYKKFTI 426 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + DD MMR VL RRFS IK+ PD +++DGG G +S Sbjct: 427 KEE--ISGDDYKMMREVLTRRFSGNIKD----------------IIPDFLLIDGGPGHVS 468 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 Q VL+ LN+ ++ +AKG R+AG E+F+V E L ++ ++Q LR+EA Sbjct: 469 IVQNVLEILNI--KVPFACMAKGHDRNAGNERFYVPDREEFTLASDSKVMLYLQLLRNEA 526 Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT+HRK+R K + S L EI+G+G RK+ L+ FG+V+ IS++S + ++ GIS Sbjct: 527 HRFAITSHRKKRDKQFFASQLSEISGVGSKRKKALMSHFGSVENISKASLAEIQNVPGIS 586 Query: 597 KKIACKIYNHFHKNTSHTP 615 K +A I H + + TP Sbjct: 587 KGLAEIILQHVN-SKKGTP 604 >gi|15675060|ref|NP_269234.1| excinuclease ABC subunit C [Streptococcus pyogenes M1 GAS] gi|71910604|ref|YP_282154.1| excinuclease ABC subunit C [Streptococcus pyogenes MGAS5005] gi|24212616|sp|Q99ZU3|UVRC_STRP1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|13622214|gb|AAK33955.1| excinuclease ABC (subunit C) [Streptococcus pyogenes M1 GAS] gi|71853386|gb|AAZ51409.1| excinuclease ABC subunit C [Streptococcus pyogenes MGAS5005] Length = 598 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 171/624 (27%), Positives = 290/624 (46%), Gaps = 43/624 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D G ++YVGKA NL+KR++SY ++ T + ++S+I + + Sbjct: 8 KLELLPDSPGCYLHKDKEGTIIYVGKAKNLKKRVRSYFRGSHDT-KTELLVSEIVDFEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT ++ EALLLE N+I++ P++NI L+DDKS+P++ IT+ P L R G Y Sbjct: 67 VTESDTEALLLEINLIQKNMPKYNIKLKDDKSYPFLKITN-ESFPRLVITRYIKKNDGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + L R F + C + + + C + + +C + Sbjct: 126 FGPYPDSYTANEVKKLLDRIFPFKKCKNPI----NKVCFYYHLGQCCAHTICHTDKAYWD 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 + + K FL+G + + E + M A+ + +E A +RD ++ ++ ++ + Sbjct: 182 RLIDDVKHFLNGKDDKIIEDLRSKMLAASKEMAFERAAEYRDLISGIATMRTKQRVMSKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ +++ + Sbjct: 242 LQDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNLFPYYTDAEEDFLTYMGQFYQDKQHF 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ + + E +E + I K PK+GEK++++ A NA + Sbjct: 302 IPKEVFIPEAIDEELVAAIVPTKIIK-------PKRGEKKQLVALATKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +++ + + RIE +DNS+I G S V MVV + K YRK Sbjct: 355 LEKDIKKTSGAIENLGQLLRIDKPV-RIEAFDNSNIQGTSPVAAMVVFVDGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + V DD A MR VL RR+S++ K P+++I+DGG G Sbjct: 414 FKIKT--VVGPDDYASMREVLFRRYSRVKKEG--------------LQAPNLIIVDGGVG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V++K + I + + K K + F E + L R + + R++ Sbjct: 458 QVNVAKDVIEK-QLGLTIPVAGLQKNDKHQT-HDLLFGNPLEVVPLPRRSEEFFLLHRIQ 515 Query: 535 DEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFA+T HR+ RRK + S LD I+G+GP RK+LLL+ F T+ I+ ++ E + ++ Sbjct: 516 DEVHRFAVTFHRQVRRKNSFSSTLDHISGLGPKRKQLLLRHFKTITAIASATSEEIQAL- 574 Query: 594 GISKKIACKIYNHF--HKNTSHTP 615 GI K + I +KN +P Sbjct: 575 GIPKTVVEAIQQQITDNKNDRSSP 598 >gi|223984564|ref|ZP_03634694.1| hypothetical protein HOLDEFILI_01989 [Holdemania filiformis DSM 12042] gi|223963469|gb|EEF67851.1| hypothetical protein HOLDEFILI_01989 [Holdemania filiformis DSM 12042] Length = 587 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 179/616 (29%), Positives = 299/616 (48%), Gaps = 49/616 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P PG Y M D ++YVGKA L+ R+ Y H ++ T ++S I + + Sbjct: 9 KLQTLPLEPGCYLMKDKNDTIIYVGKAKKLKNRVNQYFVGA-HNYKTTKLVSNIVDFDYI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI-QGS 120 VT +E EAL+LE N+IK+ +PR+NI+ DD S+PYI +T P L RD+ + Sbjct: 68 VTSSEKEALVLEINLIKKYRPRYNIMFMDDSSYPYIKLT-HEAYPTLRVVRDAKKDRKAK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 Y+GPF A +T+ L + + LR + + CL + I +C GPC + E Y Sbjct: 127 YYGPFPDASAAHQTMKLLNQLYPLRK----CDKMPKKLCLYYHIGQCLGPCELNVDPEIY 182 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E + +FL G +L ++ MN A + +E A +RD + ++ HI + Sbjct: 183 KEISEKITRFLRGDVKDLVSELKSKMNAAVEELAFEKAREYRDLITSIEHITDKQQVQVE 242 Query: 241 RM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D F+ Y +K IQ F G+ T + L FL Q+Y + Sbjct: 243 DNKDRDVFACYADKGYLAIQGFFIRSGKLLERQLSL--TPLYGDPEEELISFLMQYYQNH 300 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHT 353 P P+ +++ E + +L E+ K P +G ++K+++ A NA + Sbjct: 301 PLPQEVIVPLELDIEALQEVITCKL-------IQPVKGYRKKLLDMASNNAKTNLLQKFE 353 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + ++ +K +P + RIEI+DNSHI G V MVV + KN YR Sbjct: 354 VMERQNETTEESMRQLAQKLRIPGLS-RIEIFDNSHISGAFTVAGMVVFEDGLPCKNDYR 412 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 F LH D M+ VL RR+ +L+ +PD++++DGG Sbjct: 413 LFKLHTE----NSDVDSMKEVLYRRYFRLLNEG--------------GRFPDLLLVDGGL 454 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 Q+ AA+ +L L+++ I I + K K ++ E + + P+ + + R+ Sbjct: 455 TQIEAAKEILGSLDLD--IPICGLVKNDKHQTAS--LMNERLEIVDVEPGSPLFFLLTRM 510 Query: 534 RDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 +DE HRFAI+ HRK R+KA S LDEI+G+G +RK+ L+ +F + K + ++ E +A + Sbjct: 511 QDEVHRFAISYHRKLRQKAQTKSILDEIDGVGEVRKKKLMSTFKSFKRLKEATIEEIAQV 570 Query: 593 EGISKKIACKIYNHFH 608 + +++A +I++ H Sbjct: 571 --VPQEVAERIFDTLH 584 >gi|269958956|ref|YP_003328745.1| excinuclease ABC subunit C [Anaplasma centrale str. Israel] gi|269848787|gb|ACZ49431.1| excinuclease ABC subunit C [Anaplasma centrale str. Israel] Length = 613 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 215/604 (35%), Positives = 342/604 (56%), Gaps = 32/604 (5%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 GVY+ML G VLYVGKA +L+KR++SY + N + RI M+ I + VT +E EAL Sbjct: 32 GVYKMLGANGLVLYVGKAKDLKKRLRSYYNFNQMSDRILAMVGHITELDVIVTQSEAEAL 91 Query: 71 LLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFGPFASVD 129 LLEA +IK LKP++NI++RDDK +PYIL++ KH+ P + K+R G +GPF S Sbjct: 92 LLEAQLIKTLKPKYNIIMRDDKFYPYILLS-KHEYPRIVKYRGRKEAGLGKCYGPFISSL 150 Query: 130 AVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKK 189 V+ I++L++ F LRSC+D+ F R RPC+ ++++ CS PCT +IS E Y + VH A K Sbjct: 151 VVKLVISALRKAFQLRSCSDNFFASRDRPCIEYEMRNCSAPCTRKISEEDYAKSVHMAHK 210 Query: 190 FLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA---ALSHIQNHNDSIYNRMDCFS 246 L+G + L+ ++ +M + + DYESA+++RDRL ++ + + D S Sbjct: 211 VLTGKSKELQRELFDSMRKFSDNLDYESAMVYRDRLQALKSIQECVSFQTEMSCDADFVS 270 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLS 306 +Y C+Q F G + G+ +F+ + + + +L F+ Q Y+D P + + Sbjct: 271 IYGRSGTYCLQVISFRGGISYGSQPYFVDDGNYESESDVLGMFMLQVYSD--PPGRVYVD 328 Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366 E++ ++ + + KV I K E+ K + A +A + ++L + L Sbjct: 329 CESDYCEVINAALERLLTRKVDILTAKSHEELKFLRLARNSAMEALNRRLRDKA-LPAEL 387 Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426 ++ + F LP+ P+RIE+YDNSHI G G MVV G++G ++ +YRKF + V D Sbjct: 388 EELAELFGLPNPPERIEVYDNSHISGTHPFGVMVVCGKDGLLRKEYRKFKIQT--VLNGD 445 Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486 D +MM VL RRFS PS PD V++DGG+G +S+A VL L Sbjct: 446 DYSMMHEVLFRRFS-----------------EESPSVPDFVLIDGGRGHISSAIQVLGDL 488 Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546 I +AKG R+AG E F++ G + L+ ++ +++++RDEAHRFAIT+HR Sbjct: 489 G----IPFACMAKGSNRNAGEEVFYLPDGRKICLDPDSKLMLYMRKIRDEAHRFAITSHR 544 Query: 547 KRRKKAAYS-PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 R + S L +I G+G R+R L+ FG++ + R+ + ++ + GIS K+A +IY Sbjct: 545 SSRDRTLSSAVLCDIPGVGSARRRALITYFGSIDGVKRARTDEISKVPGISIKLAQRIYA 604 Query: 606 HFHK 609 + + Sbjct: 605 YLKQ 608 >gi|154494271|ref|ZP_02033591.1| hypothetical protein PARMER_03622 [Parabacteroides merdae ATCC 43184] gi|154085955|gb|EDN85000.1| hypothetical protein PARMER_03622 [Parabacteroides merdae ATCC 43184] Length = 601 Score = 465 bits (1196), Expect = e-128, Method: Composition-based stats. Identities = 179/610 (29%), Positives = 300/610 (49%), Gaps = 44/610 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG YQ D G ++YVGKA NL++R+ SY + + +++ ++ QI +I++ V T Sbjct: 15 IPESPGCYQYFDEKGTIIYVGKAKNLKRRVSSYFNKEHDSNKTRVLVKQIRDIKYFVVDT 74 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E +ALLLE N+IK+ +PR+N+LL+DDK++P I++ P +++ R+ Y+GP+ Sbjct: 75 EEDALLLENNLIKQYRPRYNVLLKDDKTYPSIVV-KNEYFPRVFQTRNIVRDGSRYYGPY 133 Query: 126 ASVDAVEKTINSLQRTFFLRSCADS-----VFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 S+ + + L+ + LR+C + + R + CL + IK C GPC G + E+Y Sbjct: 134 PSIYTAKVMLQMLKELYPLRTCKYPLTPESIAKGRYKVCLEYHIKHCKGPCEGLQTLEEY 193 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--- 237 + + E K+ L G + + + M + + +E A +++ + + ++ + Sbjct: 194 QQNISEIKEILRGNISQISKHLYEEMQKLAGELRFEEAQKIKEKYEVIENYRSKSTVVTP 253 Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 + + +D FSL N+N A I G TF K + + ++LS + + Sbjct: 254 MLHNIDVFSLAENENSAYINYLHIGNGAIVQAYTFEYKKRLDESKEELLSLGIIEMRNRF 313 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 ++ + L V ITVP++G+K+K++E + +N + KL Sbjct: 314 KSTAREIIVPFPLDIELE----------NVSITVPQRGDKKKLVELSEMNVKQYKVDKLK 363 Query: 358 T------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 E +LK+ + LP +P IE +DNS+I G AV VV K Sbjct: 364 QAEKLNPEQRSTRLLKEIQETLHLPKLPAHIECFDNSNIQGSDAVAACVVFKMAKPSKKD 423 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YRK+N+ V DD A M+ V+ RR+ + I E PD++I DG Sbjct: 424 YRKYNIKT--VVGPDDYASMKEVVRRRYQRAIVEE--------------TPLPDLIITDG 467 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GKGQ+ + V++ + I I +AK K E F E + + ++ + F Sbjct: 468 GKGQMEVVREVIQD-ELHLDIPIAGLAKDGKHRTS-ELLFGFPPETIGMPIQSFMFKFFT 525 Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +++DE HRFAIT H+ +R K+ S LD I GIG K LLL+ F +VK I + + L Sbjct: 526 QIQDEVHRFAITFHKDKRSKSQTKSELDTIKGIGEKTKVLLLRHFKSVKRIREAGFDELK 585 Query: 591 SIEGISKKIA 600 + G +K A Sbjct: 586 EVIGEAKTKA 595 >gi|50914154|ref|YP_060126.1| excinuclease ABC subunit C [Streptococcus pyogenes MGAS10394] gi|73920384|sp|Q5XCC0|UVRC_STRP6 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|50903228|gb|AAT86943.1| Excinuclease ABC subunit C [Streptococcus pyogenes MGAS10394] Length = 598 Score = 465 bits (1196), Expect = e-128, Method: Composition-based stats. Identities = 171/624 (27%), Positives = 290/624 (46%), Gaps = 43/624 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D G ++YVGKA NL+KR++SY ++ T + ++S+I + + Sbjct: 8 KLELLPDSPGCYLHKDKEGTIIYVGKAKNLKKRVRSYFRGSHDT-KTELLVSEIVDFEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT ++ EALLLE N+I++ P++NI L+DDKS+P++ IT+ P L R G Y Sbjct: 67 VTESDTEALLLEINLIQKNMPKYNIKLKDDKSYPFLKITN-ESFPRLVITRYIKKNDGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + L R F + C + + + C + + +C + Sbjct: 126 FGPYPDSYTANEVKKLLDRIFPFKKCKNPI----NKVCFYYHLGQCCAHTICHTDKAYWD 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 + + K FL+G + + E + M A+ + +E A +RD ++ ++ ++ + Sbjct: 182 RLIDDVKHFLNGKDDKIIEDLRSKMLAASEEMAFERAAEYRDLISGIATMRTKQRVMSKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ +++ + Sbjct: 242 LQDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNLFPYYNDAEEDFLTYMGQFYQDKQHF 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ + + E +E + I K PK+GEK++++ A NA + Sbjct: 302 IPKEVFIPEAIDEELVAAIVPTKIIK-------PKRGEKKQLVALATKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +++ + + RIE +DNS+I G S V MVV + K YRK Sbjct: 355 LEKDIKKTSGAIENLGQLLRIDKPV-RIEAFDNSNIQGTSPVAAMVVFVDGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + V DD A MR VL RR+S++ K P+++I+DGG G Sbjct: 414 FKIKT--VVGPDDYASMREVLFRRYSRVKKEG--------------LQAPNLIIVDGGVG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V++K + I + + K K + F E + L R + + R++ Sbjct: 458 QVNVAKDVIEK-QLGLTIPVAGLQKNDKHQT-HDLLFGNPLEVVSLPRRSEEFFLLHRIQ 515 Query: 535 DEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFA+T HR+ RRK + S LD I+G+GP RK+LLL+ F T+ I+ ++ E + ++ Sbjct: 516 DEVHRFAVTFHRQVRRKNSFSSTLDHISGLGPKRKQLLLRHFKTITAIASATSEEIQAL- 574 Query: 594 GISKKIACKIYNHF--HKNTSHTP 615 GI K + I +KN +P Sbjct: 575 GIPKTVVEAIQQQITDNKNDRSSP 598 >gi|326790748|ref|YP_004308569.1| UvrABC system protein C [Clostridium lentocellum DSM 5427] gi|326541512|gb|ADZ83371.1| UvrABC system protein C [Clostridium lentocellum DSM 5427] Length = 578 Score = 465 bits (1196), Expect = e-128, Method: Composition-based stats. Identities = 180/580 (31%), Positives = 300/580 (51%), Gaps = 28/580 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++PE PGVY M + G+++YVGKA NL+ R++ Y S+ NH+ ++ M+ I + + Sbjct: 7 ELKRLPEKPGVYLMKNDLGQIIYVGKAINLKNRVRQYFQSSKNHSIKVKKMVQHIVSFEY 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +EVEAL+LE N+IK+ P++NI L+DDK +PYI I + P + R Sbjct: 67 IITRSEVEALVLECNLIKKYDPKYNIRLKDDKQYPYIKINTQDAFPRMRVVRQMKKDGAK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ A+ + ++ ++ T+ LR+C ++ + + R CL + I +C+ PCTG I + Sbjct: 127 YFGPYTDAAAMWEVVDIIKNTWPLRTCTRNLPKDIGKERACLNYHIGKCNAPCTGLIDEQ 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y E + E FL+G + +K+ +M A+ +E A RD++ A+ ++ ++ Sbjct: 187 AYGEMIEEVISFLNGKYKEVIKKLQADMIVASESLQFEKAAQLRDQIQAVMKLEQKQNAT 246 Query: 239 YNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + M D + + +Q F G+ G F+LK + ++ F+ QFY Sbjct: 247 MSSMLDQDVIAFAKSPQDTLVQVYFVRKGKMVGREHFYLKDTEDEVIEEVFRDFIVQFYA 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350 + P+ I++ E +LE ++ G KV++ P +G K ++E A NA + Sbjct: 307 NATFIPKEIVIERIPNEKEVLESYLAEKKGSKVQLITPVKGTKHGLMELASKNAELTLGQ 366 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 Q + + L + L +P R+E YD S+ G +VG MVV K+ Sbjct: 367 FGDQMKKEQERTEGALAQLQEAIGLEKLPYRMEAYDISNTQGVQSVGGMVVFEGGKPKKS 426 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YRKF + ++ +D + VL+RRF++L + +E E SF PD++++D Sbjct: 427 DYRKFKIKS--IQGPNDYGSLEEVLDRRFNRLKEEQE---------ENSFSKMPDLLMMD 475 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ+S A+ +L+K + I + + K + F +GE +VL I Sbjct: 476 GGKGQVSVAEKMLEKYGLA--IPVCGMVKDDRHRTRGLLF---QGEEIVLPSGSEGFKLI 530 Query: 531 QRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKR 569 RL+DE HRF+I H+K R KA S LDEI G+G RK+ Sbjct: 531 TRLQDEVHRFSIEYHKKLRSKAQVQSLLDEIKGVGKERKK 570 >gi|19746037|ref|NP_607173.1| excinuclease ABC subunit C [Streptococcus pyogenes MGAS8232] gi|24212606|sp|Q8P163|UVRC_STRP8 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|19748204|gb|AAL97672.1| excinuclease ABC (subunit C) [Streptococcus pyogenes MGAS8232] Length = 598 Score = 465 bits (1196), Expect = e-128, Method: Composition-based stats. Identities = 171/624 (27%), Positives = 288/624 (46%), Gaps = 43/624 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D G ++YVGKA NL+KR++SY ++ T + ++S+I + + Sbjct: 8 KLELLPDSPGCYLHKDKEGTIIYVGKAKNLKKRVRSYFRGSHDT-KTELLVSEIVDFEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT ++ EALLLE N+I++ P++NI L+DDKS+P++ IT+ P L R G Y Sbjct: 67 VTESDTEALLLEINLIQKNMPKYNIKLKDDKSYPFLKITN-ESFPRLVITRYIKKNDGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + L R F + C + + + C + + +C + Sbjct: 126 FGPYPDSYTANEVKKLLDRIFPFKKCKNPI----NKVCFYYHLGQCCAHTICHTDKAYWD 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 + + K FL+G + + E + M A+ + +E A +RD ++ ++ ++ + Sbjct: 182 RLIDDVKHFLNGKDDKIIEDLRSKMLAASEEMAFERAAEYRDLISGIATMRTKQRVMSKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ +++ + Sbjct: 242 LQDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNLFPYYNDAEEDFLTYMGQFYQDKQHF 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ + + E +E + I K PK+GEK++++ A NA + Sbjct: 302 IPKEVFIPEAIDEELVAAIVPTKIIK-------PKRGEKKQLVALATKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + + + RIE +DNS+I G S V MVV + K YRK Sbjct: 355 LEKDIKKTSGAIDNLGHLLGINKPV-RIEAFDNSNIQGTSPVAAMVVFVDGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + V DD A MR VL RR+S++ K P+++I+DGG G Sbjct: 414 FKVKT--VVGPDDYASMREVLFRRYSRVKKEG--------------LQAPNLIIVDGGVG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V++K + I + + K K + F E + L R + + R++ Sbjct: 458 QVNVAKDVIEK-QLGLTIPVAGLQKNDKHQT-HDLLFGNPLEVVPLPRRSEEFFLLHRIQ 515 Query: 535 DEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFA+T HR+ RRK + S LD I+G+GP RK+LLL+ F T+ I+ ++ E + ++ Sbjct: 516 DEVHRFAVTFHRQVRRKNSFSSTLDHISGLGPKRKQLLLRHFKTITAIASATSEEIQAL- 574 Query: 594 GISKKIACKIYNHF--HKNTSHTP 615 GI K + I +KN +P Sbjct: 575 GIPKTVVEAIQQQITDNKNDRSSP 598 >gi|197122985|ref|YP_002134936.1| excinuclease ABC subunit C [Anaeromyxobacter sp. K] gi|229557970|sp|B4UGB5|UVRC_ANASK RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|196172834|gb|ACG73807.1| excinuclease ABC, C subunit [Anaeromyxobacter sp. K] Length = 707 Score = 465 bits (1196), Expect = e-128, Method: Composition-based stats. Identities = 197/669 (29%), Positives = 311/669 (46%), Gaps = 74/669 (11%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHR--ITHMISQINNIR 59 +++P PG Y M D AG V+YVGKA +L+ R++SY R + + + ++ Sbjct: 8 KLDELPAEPGCYLMKDRAGEVVYVGKASSLRSRVRSYFDPGRGDQRAFVALLDELLGDLE 67 Query: 60 FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI-- 117 VT +E EA+LLE +IK+ +PRFN+ LRDDK F + + ++H P L R Sbjct: 68 VIVTRSEKEAVLLENELIKKHRPRFNVRLRDDKDFIVLKLDERHPYPRLEVRRAREKRQP 127 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 YFGP++S ++ +T+ + R F LR+C+D VF HR RPC+L+QI RC PC E+++ Sbjct: 128 GARYFGPYSSASSIRETLRMVNRHFQLRTCSDHVFDHRKRPCILYQIHRCPAPCVYEVAA 187 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E+Y + V +A +FL G L E++ M+ A +E A RD+L A+ Sbjct: 188 EEYRQSVEDAVEFLEGREGELVERLRGRMDGAAAGLRFEEAARLRDQLQAVERSLEKQRV 247 Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D LY +Q G+ + + E + +ILS FL +Y Sbjct: 248 LMADRGDRDVIGLYREGPDLVVQVLSMRAGKLQDAQAH-PFREQEFPDEEILSSFLSLYY 306 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P+ IL+ E + L ++ G +V++ P++G K +++ A NA + Sbjct: 307 EHTDAPDEILVPLEPVQAEALADVLSERRGRRVRLLTPQRGAKADLLDVARRNAEQGFRA 366 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + + L + L P+ +E YD S G AVG V + + K YR+ Sbjct: 367 WHEHDERREQALAAVERALHLARPPRWMECYDISTFQGALAVGSGVSMKDGEPDKANYRR 426 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V QDD AM+ V+ RR + + + PD++++DGGKG Sbjct: 427 YKVK--AVAGQDDFAMLHEVITRRLRRALGEGQ---------------LPDLIVIDGGKG 469 Query: 475 QLSAAQGVLKKLNVENR----------ITIISIAK------------------------- 499 QL+AA K L V R + ++ +AK Sbjct: 470 QLNAALAAAKDLGVPTRPSPGNPDAPFVELVGLAKSRLVDGPSLGTARVVGRRGRRAEAR 529 Query: 500 -------------GPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546 + F + + +VL L+ + RLRDEAHRFAIT HR Sbjct: 530 LADAAEAAEKGFVSELARSPERVFLPGRKDPVVLRQNSAELFLLARLRDEAHRFAITFHR 589 Query: 547 K-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 K RR++ S L+EI GIG RKR LL+ FG ++ + ++PE LA +EG + A ++ Sbjct: 590 KLRRERNFQSVLEEIPGIGEGRKRALLRHFGALRRVREATPEELAQVEGFGPRQAAAVHA 649 Query: 606 HFHKNTSHT 614 FH+ + Sbjct: 650 FFHRPDAPP 658 >gi|256371640|ref|YP_003109464.1| excinuclease ABC, C subunit [Acidimicrobium ferrooxidans DSM 10331] gi|256008224|gb|ACU53791.1| excinuclease ABC, C subunit [Acidimicrobium ferrooxidans DSM 10331] Length = 620 Score = 465 bits (1196), Expect = e-128, Method: Composition-based stats. Identities = 179/616 (29%), Positives = 281/616 (45%), Gaps = 36/616 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFTVTC 64 +PE PG YQ D RV+YVGKA NL+ R+ SY + + M++ + + + V Sbjct: 10 IPEAPGSYQFRDGEDRVIYVGKARNLRARVGSYFQDPRQLSPKTRAMLAVASRLTWIVVP 69 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E +ALLLE ++IK PR+NI LRDDKS+P I +T + P +R YFGP Sbjct: 70 SEQDALLLEYSLIKEHHPRYNIRLRDDKSYPMIAVTVGERWPRAMIYRGKRRRGARYFGP 129 Query: 125 FASVDAVEKTINSLQRTFFLRSCAD---SVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +A A + + L+R LR+C+ + RPCL F I RC GPC G + Y Sbjct: 130 YADAGAAREVLELLRRALPLRTCSPAKLAQHERAGRPCLYFDIGRCVGPCIGAVDEATYR 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 V E FL G +L + + M+ A + ++E A RDRL+A+ + Sbjct: 190 GLVDEVTGFLEGRAGSLVDALETEMHAAASRLEFEEAARLRDRLSAIEAVLERQSVALGH 249 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK- 297 D ++ ++ ++ G+ G + DS + L +R +Y D+ Sbjct: 250 ERDLDAIGVHRDELDLYLEVVRVRHGRIVGVGGARAERDSGAMLFDELLDLVRSYYDDQA 309 Query: 298 -PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P I+ E E + G V++ P + E ++E A NA +H + Sbjct: 310 IDVPPRIVARVEVAEAREATDALTSLLGRPVRVVTPYRRELAVLVEIAERNAALAHQRAR 369 Query: 357 STE----ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + L + + L P RIE +D SH+ G S VG MVV+ + Y Sbjct: 370 RERATDLATRSRGLTELGELAGLGAPPVRIECFDMSHLQGRSYVGSMVVMEDGLMRHGAY 429 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472 R F + V DD MR V + + F PD+++LDGG Sbjct: 430 RHFRV---SVPHNDDVGAMREV-------------LSRRLDRLDDRRFGGRPDLIVLDGG 473 Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532 QL+ +L++ + + ++++AK + E + + E + + LY +Q+ Sbjct: 474 APQLNGVLRLLEERGMAGTVPVVALAK-----SFEELYVPDRSEPVRVPRGTLALYLLQQ 528 Query: 533 LRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 LRDEAHRFAIT HR+RR+ A S L+ I G+GP R+ LL FG++ I+ +S L Sbjct: 529 LRDEAHRFAITYHRRRRQLDAERSTLESIPGLGPARRARLLAEFGSIYEIAEASEAELVR 588 Query: 592 IEGISKKIACKIYNHF 607 G+ ++A + Sbjct: 589 A-GVPARVASAVRERL 603 >gi|139473819|ref|YP_001128535.1| excinuclease ABC subunit C [Streptococcus pyogenes str. Manfredo] gi|189038124|sp|A2REN0|UVRC_STRPG RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|134272066|emb|CAM30305.1| UvrABC system protein C [Streptococcus pyogenes str. Manfredo] Length = 598 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 171/624 (27%), Positives = 288/624 (46%), Gaps = 43/624 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D G ++YVGKA NL+KR++SY ++ T + ++S+I + + Sbjct: 8 KLELLPDSPGCYLHKDKEGTIIYVGKAKNLKKRVRSYFRGSHDT-KTELLVSEIVDFEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT ++ EALLLE N+I++ P++NI L+DDKS+P++ IT+ P L R G Y Sbjct: 67 VTESDTEALLLEINLIQKNMPKYNIKLKDDKSYPFLKITN-ESFPRLVITRYIKKNDGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + L R F + C + + + C + + +C + Sbjct: 126 FGPYPDSYTANEVKKLLDRIFPFKKCKNPI----NKVCFYYHLGQCCAHTICHTDKAYWD 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 + + K FL+G + + E + M A+ + +E A +RD ++ ++ ++ + Sbjct: 182 RLIDDVKHFLNGKDDKIIEDLRSKMLAASEEMAFERAAEYRDLISGIATMRTKQRVMSKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ +++ + Sbjct: 242 LQDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNLFPYYNDAEEDFLTYMGQFYQDKQHF 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ + + E +E + I K PK+GEK++++ A NA + Sbjct: 302 IPKEVFIPEAIDEELVAAIVPTKIIK-------PKRGEKKQLVALATKNARVSLQQKFDL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + + + RIE +DNS+I G S V MVV + K YRK Sbjct: 355 LEKDIKKTSGAIDNLGHLLGINKPV-RIEAFDNSNIQGTSPVAAMVVFVDGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + V DD A MR VL RR+S++ K P+++I+DGG G Sbjct: 414 FKIKT--VVGPDDYASMREVLFRRYSRVKKEG--------------LQAPNLIIVDGGVG 457 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ A+ V++K + I + + K K + F E + L R + + R++ Sbjct: 458 QVNVAKDVIEK-QLGLTIPVAGLQKNDKHQT-HDLLFGNPLEVVPLPRRSEEFFLLHRIQ 515 Query: 535 DEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFA+T HR+ RRK + S LD I+G+GP RK+LLL+ F T+ I+ ++ E + ++ Sbjct: 516 DEVHRFAVTFHRQVRRKNSFSSTLDHISGLGPKRKQLLLRHFKTITAIASATSEEIQAL- 574 Query: 594 GISKKIACKIYNHF--HKNTSHTP 615 GI K + I +KN +P Sbjct: 575 GIPKTVVEAIQQQITDNKNDRSSP 598 >gi|223043785|ref|ZP_03613828.1| excinuclease ABC, C subunit [Staphylococcus capitis SK14] gi|222442882|gb|EEE48984.1| excinuclease ABC, C subunit [Staphylococcus capitis SK14] Length = 594 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 172/613 (28%), Positives = 286/613 (46%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D +V+YVGKA L+ R++SY H + T ++S+I N F VT + Sbjct: 15 VPLEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVSEIRNFEFIVTSS 73 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L R G YFGP+ Sbjct: 74 ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKHPRLIVTRTVKKGTGKYFGPY 132 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + ++T L R + R C + + CL + I +C GPC ++ +KY + Sbjct: 133 PNAYSAQETKKLLDRIYPFRKCDNMP----DKLCLYYHIGQCMGPCVYDVDLDKYAQMTK 188 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E FL+G + + + M +A+ D+E A +RD + + ++ + Sbjct: 189 EITDFLNGEDKTIIHNLESRMTKASEDLDFEQAKEYRDMIQHIHNLTKKQKIMSTDNTIR 248 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G + P+ Sbjct: 249 DVFGYNVSKGWMCVQVFFIRQGNMIKRDATMIPIQQSEEEEFYTFIGQFYSLNQHILPKE 308 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 + + + ++ + + K I P +G K+++++ A NA + Sbjct: 309 VHVPKNLDKEMIHSVVDTK-------IVQPSRGAKKEMVDLANHNAEVQLENKFELIVRD 361 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ ++ + P RIE +DNS+I G V MV + K YRK+ + Sbjct: 362 ESRTIKAIEELGERMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPDKKGYRKYKIK 420 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD MR V+ RR+++++ PD++I+DGGKG ++ Sbjct: 421 T--VEGPDDYKSMREVVRRRYTRVLNEG--------------LPLPDLIIVDGGKGHMNG 464 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 VL+ +L ++ I + + K K E + E + L Y + R++DE Sbjct: 465 VMDVLENELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ R+K S LD+I+GIG RK LL++FG++K + ++ + L G+ Sbjct: 522 HRFAITFHRQTRQKTGLKSVLDDIDGIGSKRKTTLLRTFGSIKKMKEANLDDLKGA-GLP 580 Query: 597 KKIACKIYNHFHK 609 +K+A + Sbjct: 581 EKVAKNLQKALQN 593 >gi|220917777|ref|YP_002493081.1| excinuclease ABC, C subunit [Anaeromyxobacter dehalogenans 2CP-1] gi|254764919|sp|B8JDG6|UVRC_ANAD2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|219955631|gb|ACL66015.1| excinuclease ABC, C subunit [Anaeromyxobacter dehalogenans 2CP-1] Length = 707 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 196/669 (29%), Positives = 310/669 (46%), Gaps = 74/669 (11%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHR--ITHMISQINNIR 59 +++P PG Y M D AG V+YVGKA +L+ R++SY R + + + ++ Sbjct: 8 KLDELPAEPGCYLMKDRAGEVVYVGKASSLRSRVRSYFDPGRGDQRAFVALLDELLGDLE 67 Query: 60 FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI-- 117 VT +E EA+LLE +IK+ +PRFN+ LRDDK F + + ++H P L R Sbjct: 68 VIVTRSEKEAVLLENELIKKHRPRFNVRLRDDKDFIVLKLDERHPYPRLEVRRAREKRQP 127 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 YFGP++S ++ +T+ + R F LR+C+D VF HR RPC+L+QI RC PC E+++ Sbjct: 128 GARYFGPYSSASSIRETLRMVNRHFQLRTCSDHVFDHRKRPCILYQIHRCPAPCVYEVAA 187 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E+Y + V +A +FL G L E++ M A +E A RD+L A+ Sbjct: 188 EEYRQSVEDAVEFLEGREGELVERLRGRMAGAAEGLRFEEAARLRDQLQAVERSLEKQRV 247 Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D LY +Q G+ + + E + +ILS FL +Y Sbjct: 248 LMSDRGDRDVIGLYREGPDLVVQVLSMRAGKLQDAQAH-PFREQEFPDEEILSSFLSLYY 306 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P+ IL+ E + L ++ G +V++ P++G K +++ A NA + Sbjct: 307 EHTDAPDEILVPLEPVQAEALADVLSERRGRRVRLLTPQRGAKADLLDVARRNAEQGFRA 366 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + + L + L P+ +E YD S G AVG V + + K YR+ Sbjct: 367 WHEHDERREQALAAVARALHLARPPRWMECYDISTFQGALAVGSGVSMKDGEPDKANYRR 426 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + V QDD AM+ V+ RR + + + PD++++DGGKG Sbjct: 427 YKVK--AVAGQDDFAMLHEVITRRLRRALGEGQ---------------LPDLIVIDGGKG 469 Query: 475 QLSAAQGVLKKLNVENR----------ITIISIAK------------------------- 499 QL+AA K L V R + ++ +AK Sbjct: 470 QLNAALAAAKDLGVPTRPSPGNPDAPFVELVGLAKSRLVDGPSLGTARVVGRRGRRAEAR 529 Query: 500 -------------GPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546 + F + + +VL L+ + RLRDEAHRFAIT HR Sbjct: 530 LADAAEAAEKGFVSELARSPERVFLPGRKDPVVLRQNSAELFLLARLRDEAHRFAITFHR 589 Query: 547 K-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 K RR++ S L+EI GIG RKR LL+ FG ++ + ++PE +A +EG + A ++ Sbjct: 590 KLRRERNFQSVLEEIPGIGEGRKRALLRHFGALRRVREATPEEIAQVEGFGPRQAAAVHA 649 Query: 606 HFHKNTSHT 614 FH+ + Sbjct: 650 FFHRPDAPP 658 >gi|313148062|ref|ZP_07810255.1| excinuclease ABC subunit C [Bacteroides fragilis 3_1_12] gi|313136829|gb|EFR54189.1| excinuclease ABC subunit C [Bacteroides fragilis 3_1_12] Length = 608 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 172/616 (27%), Positives = 305/616 (49%), Gaps = 38/616 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PG+YQ L+ G ++YVGKA NL++R+ SY + + ++S+I +IR+ V Sbjct: 19 NLPEKPGIYQYLNAEGTIIYVGKAKNLKRRVYSYFSKEHQPGKTRVLVSKIADIRYIVVN 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E +ALLLE N+IK+ KPR+N+LL+DDK++P I + + P ++K R SY+GP Sbjct: 79 SEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRVFKTRRIIRNGSSYYGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ ++ ++ ++ + LR+C +++ + CL + IK C+GPC G S E+ Sbjct: 138 YSHAPSMHAVLDLIKHLYPLRTCSLNLSPENIRAGKFNVCLEYHIKNCAGPCIGLQSQEE 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y++ + E K+ L G + + + + M + + +E A +++ A + + ++ ++ + Sbjct: 198 YLKNISEIKEILKGNTQEISKMLYQQMQELAAEMKFEEAQKVKEKYALIENYRSKSEVVS 257 Query: 240 NRMDCFSLYHNKNL----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + + ++ + A I G TF K T ++L+ + + Sbjct: 258 SVLHNIDVFSIEEDGEKSAFINYLHITNGAINQAFTFEYKKKLNETKEELLTLGIIEMRE 317 Query: 296 D-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K I++ + E Q G K K+ ++ + A Sbjct: 318 RYKSASREIIVPFDIEMELNNVTFTIPQRGDKKKLLELSLLNVKQYKADRMKQAE----- 372 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 KL+ E ++K+ ++ L +P +IE +DNS+I G AV VV + KN YRK Sbjct: 373 KLNPEQRSMRLMKEIQQELHLDRLPMQIECFDNSNIQGTDAVAACVVFKKAKPSKNDYRK 432 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 +N+ V DD A M+ V+ RR+ ++++ E PD++I DGGKG Sbjct: 433 YNIKT--VVGADDYASMKEVVRRRYQRVLEEE--------------SPLPDLIITDGGKG 476 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q+ + V+++L ++ I I +AK K E F + + + P+ +++++ Sbjct: 477 QMEVVRQVMEELQLD--IPIAGLAKDRKHRTS-EVLFGFPPQTIGIKQHSPLFRLLEQIQ 533 Query: 535 DEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR +R K S LD I GIG K LLL+ F +VK I +S E +A++ Sbjct: 534 DEVHRFAITFHRDKRSKRQVSSALDSIKGIGEKTKTLLLKEFKSVKRIKEASMEEVATV- 592 Query: 594 GISKKIACKIYNHFHK 609 I + A + + Sbjct: 593 -IGESKAKIVKEGLNN 607 >gi|218258583|ref|ZP_03474926.1| hypothetical protein PRABACTJOHN_00581 [Parabacteroides johnsonii DSM 18315] gi|218225353|gb|EEC98003.1| hypothetical protein PRABACTJOHN_00581 [Parabacteroides johnsonii DSM 18315] Length = 605 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 179/610 (29%), Positives = 298/610 (48%), Gaps = 44/610 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG YQ D G ++YVGKA NL++R+ SY + + +++ ++ QI +I++ V T Sbjct: 19 IPESPGCYQYFDEKGTIIYVGKAKNLKRRVSSYFNKEHDSNKTRVLVKQIRDIKYFVVDT 78 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E +ALLLE N+IK+ +PR+N+LL+DDK++P I++ P +++ R+ Y+GP+ Sbjct: 79 EEDALLLENNLIKQYRPRYNVLLKDDKTYPSIVV-KNEYFPRIFQTRNIVRDGSRYYGPY 137 Query: 126 ASVDAVEKTINSLQRTFFLRSCADS-----VFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 S+ + + L+ + LR+C + R + CL + IKRC GPC G + E+Y Sbjct: 138 PSIYTAKVMLQMLKELYPLRTCKYPLTPESIAEGRYKVCLEYHIKRCKGPCEGLQTLEEY 197 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--- 237 + + E K+ L G + + + M + + +E A +++ + + ++ + Sbjct: 198 QQNISEIKEILRGNISQISKHLYEEMQKLAGELRFEEAQKIKEKYEVIENYRSKSTVVTP 257 Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 + + +D FSL N+N A I G TF K + + +LS + + Sbjct: 258 MLHNIDVFSLAENENSAYINYLHIGNGAIVQAYTFEYKKRLDESKEDLLSLGIIEMRNRF 317 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 ++ + L V ITVP++G+K+K++E + +N + KL Sbjct: 318 KSTAREIIVPFPLDIELE----------NVSITVPQRGDKKKLVELSEMNVKQYKVDKLK 367 Query: 358 T------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 E +LK+ L +P IE +DNS+I G AV VV K Sbjct: 368 QAEKLNPEQRSTRLLKEIQDTLHLSKLPAHIECFDNSNIQGSDAVAACVVFKMAKPSKKD 427 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YRK+N+ V DD A M+ V+ RR+ + I E PD++I DG Sbjct: 428 YRKYNIKT--VVGPDDYASMKEVVRRRYQRAIAEE--------------TPLPDLIITDG 471 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GKGQ+ + V++ + I I +AK K E F E + + ++ + F Sbjct: 472 GKGQMEVVREVIQD-ELHLDIPIAGLAKDGKHRTS-ELLFGFPPETIGMPIQSFMFKFFT 529 Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +++DE HRFAI H+ +R K+ S LD+I GIG K LLL+ F +VK I +S + L Sbjct: 530 QIQDEVHRFAIAFHKDKRSKSQTKSELDKIKGIGEKTKVLLLRHFKSVKRIREASFDELK 589 Query: 591 SIEGISKKIA 600 + G +K A Sbjct: 590 EVIGEAKTKA 599 >gi|298387043|ref|ZP_06996597.1| excinuclease ABC subunit C [Bacteroides sp. 1_1_14] gi|298260193|gb|EFI03063.1| excinuclease ABC subunit C [Bacteroides sp. 1_1_14] Length = 609 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 169/622 (27%), Positives = 301/622 (48%), Gaps = 47/622 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PGVYQ L+ G ++YVGKA NL+KR+ SY + + ++S+I +IR+ V Sbjct: 19 NLPEKPGVYQYLNTEGTIIYVGKAKNLKKRVYSYFSKEHEPGKTRVLVSKIADIRYIVVN 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + + P +++ R SY+GP Sbjct: 79 TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRIFRTRKIIKNGSSYYGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + ++ ++ ++ + LR+C +++ + + CL + IK+C+GPC G S E Sbjct: 138 YSHLPSMYAVLDLIKHLYPLRTCNLNLSPENIRAGKFKVCLEYHIKKCAGPCVGLQSHED 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y++ + E K+ L G ++ + M + + +E A +++ + + ++ ++ + Sbjct: 198 YLKNIDEIKEILKGNTQDISRMLVERMQELANEMKFEEAQKIKEKYLLIENYRSKSEVVS 257 Query: 240 NRMDCFSLYHNK----NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + + ++ + N A + G TF K + ++L+ + + Sbjct: 258 SVLHNIDVFSIEEDDSNSAFVNYLHITNGAINQAFTFEYKKKLNESKEELLTLGIIEMRE 317 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ + L V TVP++G+K+K+++ +++N + + Sbjct: 318 RYKSHSREIIVPFELDLELN----------NVVFTVPQRGDKKKLLDLSILNVKQYKADR 367 Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 L E +LK+ + L P +IE +DNS+I G AV VV + K Sbjct: 368 LKQAEKLNPEQRSMRLLKEIQNELHLDKPPLQIECFDNSNIQGSDAVAACVVFKKAKPSK 427 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 YRK+N+ V DD A M+ V+ RR+ + I+ PD++I Sbjct: 428 KDYRKYNIKT--VVGPDDYASMKEVVRRRYQRAIEEN--------------SPLPDLIIT 471 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ+ + V++ + I I +AK K E F + + + + + Sbjct: 472 DGGKGQMEVVREVIED-ELHLNIPIAGLAKDNKHRTS-ELLFGFPAQTIGIKQQSSLFRL 529 Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 + +++DE HRFAIT HR +R K S LD I GIG K LL+ F +VK I +S E Sbjct: 530 LTQIQDEVHRFAITFHRDKRSKRQVASALDSIKGIGEKTKTALLKEFKSVKRIKEASLEE 589 Query: 589 LASIEGISKKIACKIYNHFHKN 610 +A + I + A + Sbjct: 590 IAKV--IGEVKAQTVKKGLSNE 609 >gi|329960636|ref|ZP_08298979.1| excinuclease ABC, C subunit [Bacteroides fluxus YIT 12057] gi|328532509|gb|EGF59303.1| excinuclease ABC, C subunit [Bacteroides fluxus YIT 12057] Length = 613 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 175/624 (28%), Positives = 312/624 (50%), Gaps = 49/624 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PG+YQ L+ G ++YVGKA NL++R+ SY + + + ++S+I +IR+ V Sbjct: 16 NLPESPGIYQYLNTEGTIIYVGKAKNLKRRVSSYFNREHEPGKTRVLVSKIADIRYIVVN 75 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + + P ++K R SY+GP Sbjct: 76 TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRVFKTRKIIRNGSSYYGP 134 Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + ++ ++ ++ + LR+C +++ + CL + IK C+GPC G+ S E Sbjct: 135 YSHIPSMYALLDLIKHLYPLRTCNLNLSPENIRAGKFNVCLEYHIKNCAGPCIGKQSQED 194 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y++ + E K+ L G ++ + + M + + +E A +++ + + ++ ++ + Sbjct: 195 YLKNIAEIKEILKGNTQEVERMLFQQMQELAAEMKFEEAQKIKEKYLLIENYRSKSEVVS 254 Query: 240 NRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 N + ++ + A I G TF K + ++LS + + Sbjct: 255 NVLHNIDVFSIEEDNDERSAFINYLHITNGAINQAFTFEYKKRLNESKEELLSLGIIEMR 314 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 ++ + L V T+P++G+K+K++E +++N + Sbjct: 315 ERYKSLSREIIVPFEVDMEL----------KDVVFTIPQRGDKKKLLELSILNVKQYKAD 364 Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 +L E +LK+ ++ L +P +IE +DNS+I G V VV + Sbjct: 365 RLKQSEKLNPEQRTVRLLKEIQQELHLDRLPMQIECFDNSNIQGSDPVAACVVFLKGKPS 424 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 K YRK+N+ V+ DD A M+ V++RR+ + ++ + PD++I Sbjct: 425 KKDYRKYNIKT--VEGPDDYASMKEVVKRRYQRAVEEK--------------LPLPDLLI 468 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 DGGKGQ+SA + V+ +L ++ I I +AK K E + + + L P+ Sbjct: 469 TDGGKGQMSAVKEVMDELKLD--IPIAGLAKDGKHRTS-ELLYGFPPQTIGLKQNTPLFR 525 Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 + ++DE HRFAIT HR +R K S LDEI GIG K LL+ F +VK I +S E Sbjct: 526 LLTHIQDEVHRFAITFHRDKRSKRQIASALDEIKGIGEKTKAALLKEFKSVKRIKEASSE 585 Query: 588 TLASIEGISKKIACKIYNHFHKNT 611 L + G + A I +F ++ Sbjct: 586 ALGKVVG--EAKAKLIQEYFTESE 607 >gi|29348675|ref|NP_812178.1| excinuclease ABC subunit C [Bacteroides thetaiotaomicron VPI-5482] gi|81443557|sp|Q8A2N9|UVRC_BACTN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|29340580|gb|AAO78372.1| excinuclease ABC subunit C [Bacteroides thetaiotaomicron VPI-5482] Length = 609 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 169/622 (27%), Positives = 301/622 (48%), Gaps = 47/622 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PGVYQ L+ G ++YVGKA NL+KR+ SY + + ++S+I +IR+ V Sbjct: 19 NLPEKPGVYQYLNTEGTIIYVGKAKNLKKRVYSYFSKEHEPGKTRVLVSKIADIRYIVVN 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + + P +++ R SY+GP Sbjct: 79 TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRIFRTRKIIKNGSSYYGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + ++ ++ ++ + LR+C +++ + + CL + IK+C+GPC G S E Sbjct: 138 YSHLPSMYAVLDLIKHLYPLRTCNLNLSPENIRAGKFKVCLEYHIKKCAGPCVGLQSHED 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y++ + E K+ L G ++ + M + + +E A +++ + + ++ ++ + Sbjct: 198 YLKNIDEIKEILKGNTQDISRMLVEKMQELANEMKFEEAQKIKEKYLLIENYRSKSEVVS 257 Query: 240 NRMDCFSLYHNK----NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + + ++ + N A + G TF K + ++L+ + + Sbjct: 258 SVLHNIDVFSIEEDDSNSAFVNYLHITNGAINQAFTFEYKKKLNESKEELLTLGIIEMRE 317 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ + L V TVP++G+K+K+++ +++N + + Sbjct: 318 RYKSHSREIIVPFELDLELN----------NVVFTVPQRGDKKKLLDLSILNVKQYKADR 367 Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 L E +LK+ + L P +IE +DNS+I G AV VV + K Sbjct: 368 LKQAEKLNPEQRSMRLLKEIQNELHLDKPPLQIECFDNSNIQGSDAVAACVVFKKAKPSK 427 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 YRK+N+ V DD A M+ V+ RR+ + I+ PD++I Sbjct: 428 KDYRKYNIKT--VVGPDDYASMKEVVRRRYQRAIEEN--------------SPLPDLIIT 471 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ+ + V++ + I I +AK K E F + + + + + Sbjct: 472 DGGKGQMEVVREVIED-ELHLNIPIAGLAKDNKHRTS-ELLFGFPAQTIGIKQQSSLFRL 529 Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 + +++DE HRFAIT HR +R K S LD I GIG K LL+ F +VK I +S E Sbjct: 530 LTQIQDEVHRFAITFHRDKRSKRQVASALDSIKGIGEKTKTALLKEFKSVKRIKEASLEE 589 Query: 589 LASIEGISKKIACKIYNHFHKN 610 +A + I + A + Sbjct: 590 IAKV--IGEVKAQTVKKGLSNE 609 >gi|222054404|ref|YP_002536766.1| excinuclease ABC, C subunit [Geobacter sp. FRC-32] gi|254764934|sp|B9M422|UVRC_GEOSF RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|221563693|gb|ACM19665.1| excinuclease ABC, C subunit [Geobacter sp. FRC-32] Length = 622 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 195/619 (31%), Positives = 299/619 (48%), Gaps = 34/619 (5%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVTCT 65 P PGVY M D VLYVGKA +L+KRI+SY ++ + +I +++++ +I+F VT T Sbjct: 11 PSSPGVYIMKDAEATVLYVGKARDLRKRIRSYFAASGDSRYQIRFLMARVTDIQFIVTDT 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EAL+LE +IK+ +P++N LRDDK++ + + P L R + YFGP+ Sbjct: 71 EKEALILENTLIKKYRPKYNFNLRDDKTYFSLRMDMSSDFPRLSIIRKVTRDGARYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +S + L + F LR R R RPCL +Q+K+CS PC G+IS E YM Sbjct: 131 SSASDARAVLKHLYKLFPLRHYPMETCRRRNRPCLFYQLKQCSAPCHGKISREDYMALAE 190 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NRMD 243 A FL G N + + M+ A E YE A RD + ++ + D Sbjct: 191 GAALFLEGKNREILKIFRERMSAAAAAEKYEKAARFRDLIRSIEVTVEKQKVVAQGGDSD 250 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY-TDKPCPEN 302 Y I F G G+ + E + + ++ FL ++Y + P Sbjct: 251 VIGFYREGEQLHIALLFLRGGTLTGSRNYSFSW--EMDDHEGIASFLNEYYNQEVFIPSE 308 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 I+L + E + G +V ITVP++G K +++ A+ NA + ++ S Sbjct: 309 IVLPIAIADPLPQEELLCELRGRRVSITVPQRGNKLELVRLAIKNAETAAAERKKAAESG 368 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 + IL+ ++ L +P+RIE YD S+I G AVG V + K YR++ + V Sbjct: 369 EAILQTLKERLHLHKLPRRIECYDISNIQGQMAVGSKVAFVDGKADKAHYRRYRIKG--V 426 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD AMMR + RRF + +PD++I+DGG GQL+ V Sbjct: 427 SQSDDFAMMREMFSRRFK---------------PGTAPDDYPDLIIVDGGIGQLNVLTHV 471 Query: 483 LKKLNVENRITIISIAK-GPKRSAG--------MEKFFVKKGEALVLNMRDPILYFIQRL 533 L L + + + +AK R G F + +VL L + R+ Sbjct: 472 LGDLQITD-VEAAGLAKSRVDREMGATEISRSDERVFLPNRKNPVVLRQNSAPLLLLARI 530 Query: 534 RDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDEAHRFA+ H+K R K S L+ I GIG R++ LL+ FG++K IS ++ E L + Sbjct: 531 RDEAHRFAVAYHKKLRGNKLLASQLEAIPGIGIKRRKELLRHFGSLKKISEATLEELRQV 590 Query: 593 EGISKKIACKIYNHFHKNT 611 +GIS +A ++ H H+N Sbjct: 591 QGISATVAESLWKHLHENE 609 >gi|329956357|ref|ZP_08296954.1| excinuclease ABC, C subunit [Bacteroides clarus YIT 12056] gi|328524254|gb|EGF51324.1| excinuclease ABC, C subunit [Bacteroides clarus YIT 12056] Length = 606 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 175/620 (28%), Positives = 311/620 (50%), Gaps = 49/620 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PG+YQ L+ G ++YVGKA NL++R+ SY + + + ++S+I +IR+ V Sbjct: 16 NLPESPGIYQYLNAEGTIIYVGKAKNLKRRVSSYFNREHEPGKTRVLVSKIADIRYIVVN 75 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + + P ++K R SY+GP Sbjct: 76 TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRVFKTRRIIRNGSSYYGP 134 Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + ++ ++ ++ + LR+C +++ + CL + IK C+GPC G+ + E+ Sbjct: 135 YSHIPSMYAVLDLIKHLYPLRTCNLNLSPENIRAGKFNVCLEYHIKNCAGPCIGKQNQEE 194 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y++ + E K+ L G ++ + + M + + +E A +++ L + ++ ++ + Sbjct: 195 YLKNIAEIKEILKGNTQEIERMLYQQMQELAAEMKFEEAQKIKEKYLLLENYRSKSEVVS 254 Query: 240 NRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 N + ++ + A I G TF K T ++LS + + Sbjct: 255 NVLHNIDVFSIEEDNDEKSAFINYLHITNGAINQAFTFEYKKRLNETKEELLSLGIIEMR 314 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 ++ + L V T+P++G+K+K++E +++N + Sbjct: 315 ERYKSLSREIIVPFELDMEL----------KDVTFTIPQRGDKKKLLELSILNVKQYKAD 364 Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 +L E +LK+ ++ L +P +IE +DNS+I G V VV + Sbjct: 365 RLKQAEKLNPEQRTIRLLKEIQQELHLDRLPMQIECFDNSNIQGSDPVAACVVFIKGKPS 424 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 K YRK+N+ V+ DD A M+ V++RR+ + I+ PD++I Sbjct: 425 KKDYRKYNIKT--VEGPDDYASMKEVVKRRYQRAIEEN--------------SPLPDLLI 468 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 DGGKGQ+SA + ++ +LN++ I I +AK K E + + + L P+ Sbjct: 469 TDGGKGQMSAVKEIIDELNLD--IPIAGLAKDGKHRTS-ELLYGFPPQTIGLKQNSPLFR 525 Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 + +++DE HRFAIT HR +R K S LDEI GIG K LL+ F +VK I + E Sbjct: 526 LLTQIQDEVHRFAITFHRDKRSKRQVASALDEIKGIGDKTKNALLKEFKSVKRIKEAPAE 585 Query: 588 TLASIEGISKKIACKIYNHF 607 + + G + A I +F Sbjct: 586 AIIKVVG--ETKAKIIKEYF 603 >gi|33861439|ref|NP_893000.1| excinuclease ABC subunit C [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|81576027|sp|Q7V1I9|UVRC_PROMP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|33634016|emb|CAE19341.1| Excinuclease ABC subunit C (UvrC) [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 656 Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 194/626 (30%), Positives = 314/626 (50%), Gaps = 29/626 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 ++P+ G Y DI +LY+GK+ L+ R+ SY ++ + R++ M+ QI I VT Sbjct: 38 EIPKSSGCYLFKDIDNNLLYIGKSKTLRNRVSSYFNNYAELSPRLSLMVRQITEIEIIVT 97 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG--SY 121 +E EAL LE+N+IK KP FNILL+DDK +PY+ IT + P ++ R Y Sbjct: 98 DSEYEALNLESNLIKTNKPYFNILLKDDKKYPYLCITWSEQYPRIFITRKRRNRNNFDRY 157 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GP+ V + KT+ +++ F LR V++ RT CL + I RC G C ISSE Y Sbjct: 158 YGPYVDVGLLRKTLFIIKKIFPLRQRPRPVYKDRT--CLNYSIGRCPGVCQEIISSEDYK 215 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + + + G N +L+ + R MNQ + ++E+A RD+++ L + Sbjct: 216 KTMKQVSMIFQGRNDDLEVFLERKMNQYSNDLEFENAAKIRDQISGLKLLTESQKISIPD 275 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD- 296 D F + N++ IQ G+ G + K D S +IL L + Y + Sbjct: 276 SSINRDIFGIVSENNISSIQIFQMRSGKLIGRIGYTQKID-NSDETEILQRVLEEHYINV 334 Query: 297 --KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P ILL + + +E + KVK+ +PK+ +K + +E L NA + Sbjct: 335 EGVEIPSEILLQFNLPKHNTIEEWLSELRQKKVKLIIPKRNKKFETVEMVLKNAKLELER 394 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 L+ ++ ++D T+ L + P+RIE YD SHI G V VV + K YRK Sbjct: 395 ILNGIQDNESSIEDLTQILELTNQPRRIEGYDISHIQGTDPVASQVVFIDGIPSKQNYRK 454 Query: 415 FNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFP--------SWP 464 + + ++ DD A + V+ RRF + K + + Q+ WP Sbjct: 455 YKIKDPNIFIGHSDDFASIYEVIYRRFKKWSKFKIDGGDISSLQDKKKSTLENDLLTDWP 514 Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524 D++++DGGKGQL+AA L +L++ + I S+AK + E F ++L + Sbjct: 515 DLIMIDGGKGQLNAALKALTQLDLHEEVNICSLAKKNE-----EIFIPGFSKSLDTDQNQ 569 Query: 525 PILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583 L ++R+RDEAHRFA++ HR +R + S L +I G+GP R + LL+ F ++ I Sbjct: 570 KGLLLLRRVRDEAHRFALSFHRNKRSARMNRSQLSQIPGLGPSRIKDLLEHFNSIDAIRI 629 Query: 584 SSPETLASIEGISKKIACKIYNHFHK 609 +S E L+ ++G+ A IYN+F++ Sbjct: 630 ASREELSKVKGLGMHSANDIYNYFNE 655 >gi|186475616|ref|YP_001857086.1| excinuclease ABC subunit C [Burkholderia phymatum STM815] gi|184192075|gb|ACC70040.1| excinuclease ABC, C subunit [Burkholderia phymatum STM815] Length = 740 Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 191/699 (27%), Positives = 305/699 (43%), Gaps = 99/699 (14%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D G VLYVGKA +L+KR+ SY + RI M+S+I I TVT Sbjct: 46 QLPHMPGVYRYYDEQGAVLYVGKARDLKKRVSSYFTKTLLSPRIAMMVSRIAKIETTVTR 105 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H+ P + +R S + YFGP Sbjct: 106 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHQFPRMAYYRGSVDKKNQYFGP 164 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RC+ PC G ++ E Y V Sbjct: 165 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVGAVTEEDYARDV 224 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 A +FL G + +++ + M+ + +E A R+++++LS + + Sbjct: 225 SNASRFLLGRQSEVMKELEQKMHAFASELKFEQAAAVRNQMSSLSTVLHQQAIEVGGDSD 284 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS----------------------- 278 +D ++ C+ G++ G +F Sbjct: 285 VDILAVVALGGRVCVNLAMVRGGRHLGDKAYFPTHVESALTADEGGIEDGDVLLSAETAS 344 Query: 279 ---------ESTNAQI------------LSYFLRQFYTDKPCPENILLSEEAEETSLLEI 317 + + + D E+E Sbjct: 345 VIDVEAELGDESEDALSIDEAASEESAPEESDSEDVAEDADKKPRRAHGIESEVLEAFIA 404 Query: 318 SFFKQYGYKVKITVPKQGEKRKIIEQALINA--HRSHTQKLSTEISHQMILKDFTKKFAL 375 + + V R++++ + A + ++ + + + + K AL Sbjct: 405 QHYLGNRVPPVLVVSHAPASRELVDLLIEQAGHKVTLLRQPQGQKRAWLAMAEQNAKIAL 464 Query: 376 PH----------------IPKRIEIYDNSH---------IMGCSAVGCMVV-VGENGFVK 409 +E D +H A V + Sbjct: 465 ARLLSEQGSQQSRTRSLANTLSMECEDLAHLRIECFDISHTMGEATQASCVVFHHHKMQS 524 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLI------------------KNEENLNF 451 ++YR++N+ + DD A MR VL RR+ +++ + Sbjct: 525 SEYRRYNI--TGITPGDDYAAMRQVLTRRYEKMVAQAAANANDEAAELQPEAAADPAAAP 582 Query: 452 HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF 511 + + P++V++DGGKGQ+ A+ V +L ++ + ++ +AKG R G+E Sbjct: 583 EGAEPVAAGGQLPNIVLIDGGKGQVEIARQVFNELGLDLGM-LVGVAKGEGRKVGLETLV 641 Query: 512 VKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKR 569 G L L L + ++RDEAHRFAIT R +R K S L+E+ G+G R++ Sbjct: 642 FADGRPSLELGKESAALMLVAQIRDEAHRFAITGMRAKRGKTRQTSRLEELEGVGAKRRQ 701 Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 LL FG ++ + +S + LAS+EGIS+ +A +IY H Sbjct: 702 RLLARFGGLRGVVAASIDDLASVEGISRALAEQIYRQLH 740 >gi|256419523|ref|YP_003120176.1| excinuclease ABC subunit C [Chitinophaga pinensis DSM 2588] gi|256034431|gb|ACU57975.1| excinuclease ABC, C subunit [Chitinophaga pinensis DSM 2588] Length = 615 Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 180/629 (28%), Positives = 299/629 (47%), Gaps = 54/629 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PG+Y+ AG +LYVGKA +L+KR+ SY N+ ++ ++ I++I FT+ Sbjct: 12 TIPLQPGIYKYYSEAGELLYVGKAKSLRKRVSSYFVKNHDNYKTRKLVENIHHIEFTIVG 71 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E +A LLE ++IK+ +P+FNI L+DDK++PYI+I P ++ R+ Y GP Sbjct: 72 SEQDAFLLENSLIKQFQPKFNINLKDDKTYPYIVI-KHESYPRVFLTRNVIKDGSEYLGP 130 Query: 125 FASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 F SV V + + ++ RT L +V + + + CL + + C GPC G + E Sbjct: 131 FTSVGRVRELLEVIRYNIPLRTCNLNLSPQNVAKGKYKVCLEYHLGNCKGPCEGLQTEED 190 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237 Y E + + K L G + + M + + ++E A I R ++ +L Q+ + Sbjct: 191 YREGLQQVKNILRGNLSPVLQLFRTQMQEHAMNMEFEKAEIVRKKIESLQAYQSKSTIVG 250 Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 +D FS+ N A + G T T L+ E + ++L+Y + Sbjct: 251 TRVGNVDVFSIISEGNYAYVNYLRVLNGTIADTKTVTLEKKLEEDDTEVLTYAVGYLRDA 310 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + I++ E E V I+VPK G+K+K++E + N + + Sbjct: 311 FQSLAREIIVPLEIEYPEE-----------HVTISVPKGGDKKKLLELSEKNVNYFKEEL 359 Query: 356 LSTE---------ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 + + + +L L +P IE +DNS+ G V VV + Sbjct: 360 YRKKILHLEGKSDMEKKKVLYQLQADLELQELPLHIECFDNSNFQGAYPVSACVVFKDGV 419 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 K YR FN+ V+ +D A M+ V+ RR+S+L+ ++ L P + Sbjct: 420 ASKKDYRHFNIKT--VQGINDFASMKEVVYRRYSRLLAEQQPL--------------PQL 463 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526 VI+DGGKGQL +A ++ L++ +T++ +AK + E FF +++ L Sbjct: 464 VIIDGGKGQLGSAMESIRALDLIGSMTVVGLAKNEE-----EIFFPGDKDSIKLPYDSES 518 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 L I+R+RDE HRF IT HR++R K + L+ I GIG LL++F +V I S Sbjct: 519 LKLIRRVRDEVHRFGITFHRQKRSKGTFKNELEAIKGIGENTATQLLKTFRSVAKIKLLS 578 Query: 586 PETLASIEGISKKIACKIYNHFHKNTSHT 614 + L ++ I A +Y HFH T T Sbjct: 579 EDDL--VKEIGAAKARLVYTHFHPATGET 605 >gi|227499427|ref|ZP_03929538.1| excision endonuclease subunit UvrC [Anaerococcus tetradius ATCC 35098] gi|227218489|gb|EEI83732.1| excision endonuclease subunit UvrC [Anaerococcus tetradius ATCC 35098] Length = 616 Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 184/614 (29%), Positives = 296/614 (48%), Gaps = 26/614 (4%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVTCT 65 PE PGVY M + ++YVGKA +L++R++ Y +S N ++ M+ I++ + + Sbjct: 14 PELPGVYIMRNADDEIIYVGKAISLKRRVRQYFDNSKNKGAKVLAMVKNIDHFEYIIVQN 73 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 EVEAL+LE+N+IK+ +PR+NI+LRDDK +PYI I K K P + K R YFGP+ Sbjct: 74 EVEALVLESNLIKKNRPRYNIVLRDDKQYPYIKI-LKEKFPRIKKVRQVKKDGAKYFGPY 132 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSEKYMEF 183 AV I + R+C + + RPCL + IK+C GPC + Y+ Sbjct: 133 PDAYAVNDAIALFHLYYPFRTCNLNFDKGARLDRPCLNYFIKKCKGPCVDKEDESTYLRN 192 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240 + + FL + + + M + + ++E A I+RD ALS I + + Sbjct: 193 MEQVSSFLDKKSDKIPAWVLEKMQAYSKELNFEMAAIYRDYYRALSVISERQNVTETRAD 252 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-C 299 MD + N IQ F G+ F +K D + I+S F++QFY D Sbjct: 253 DMDIIATSKGINNIIIQVFFMRMGKIVDREHFVIKNDFMEKDEDIISSFMKQFYLDMTYI 312 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQK 355 P+ I++ + L + KV I PK G+K+++++ A NA + + Sbjct: 313 PKEIIVQSLPSDLQSLSDFLSDKKNAKVSIMKPKLGKKKELLDLASRNAYDMRMKLDKRI 372 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 E + + R+E +D S+ G +VG MVV + +YRKF Sbjct: 373 ERKERKRSSGFNQLKEILNIK-DIFRMECFDISNTSGVLSVGSMVVYEDGIPTPKEYRKF 431 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 + V DD A R +L RR + I+ + + F S PD++++DGGKGQ Sbjct: 432 KIKT--VVGPDDYASHREILTRRLKRGIEEKAK-----GYTKTGFGSMPDLILMDGGKGQ 484 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 +S A+ V+ +L ++ I I + K K + + E + +N RDP+ I +++ Sbjct: 485 VSIAKEVISELALD--IEIAGLVKDDKHTTRA---IIYDNEEIPINRRDPVYKLIYEIQE 539 Query: 536 EAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 +AH FAI HRK + S LDEI G+G ++ L + F T+ I ++S E L + Sbjct: 540 QAHNFAINYHRKLMQNTMKKSELDEIKGVGEKTRKNLYKHFKTIANIKKASVEELMEVPL 599 Query: 595 ISKKIACKIYNHFH 608 + K A +IY +F Sbjct: 600 VGKVQALEIYKYFK 613 >gi|253568980|ref|ZP_04846390.1| excinuclease ABC subunit C [Bacteroides sp. 1_1_6] gi|251840999|gb|EES69080.1| excinuclease ABC subunit C [Bacteroides sp. 1_1_6] Length = 609 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 170/622 (27%), Positives = 300/622 (48%), Gaps = 47/622 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PGVYQ L+ G ++YVGKA NL+KR+ SY + + ++S+I +IR+ V Sbjct: 19 NLPEKPGVYQYLNTEGTIIYVGKAKNLKKRVYSYFSKEHEPGKTRVLVSKIADIRYIVVN 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + + P +++ R SY+GP Sbjct: 79 TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRIFRTRKIIKNGSSYYGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + ++ ++ ++ + LR+C +++ + + CL + IK+C+GPC G S E Sbjct: 138 YSHLPSMYAVLDLIKHLYPLRTCNLNLSPENIRAGKFKVCLEYHIKKCAGPCVGLQSHED 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y++ + E K+ L G ++ + M + +E A +++ + + ++ ++ + Sbjct: 198 YLKNIDEIKEILKGNTQDISRMLVEKMQDLASEMKFEEAQKIKEKYLLIENYRSKSEVVS 257 Query: 240 NRMDCFSLYHNK----NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + + ++ + N A I G TF K + ++L+ + + Sbjct: 258 SVLHNIDVFSIEEDDSNSAFINYLHITNGAINQAFTFEYKKKLNESKEELLTLGIIEMRE 317 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ + L V TVP++G+K+K+++ +++N + + Sbjct: 318 RYKSHSREIIVPFELDLELN----------NVVFTVPQRGDKKKLLDLSILNVKQYKADR 367 Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 L E +LK+ + L P +IE +DNS+I G AV VV + K Sbjct: 368 LKQAEKLNPEQRSMRLLKEIQSELHLDKPPLQIECFDNSNIQGSDAVAACVVFKKAKPSK 427 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 YRK+N+ V DD A M+ V+ RR+ + I+ PD++I Sbjct: 428 KDYRKYNIKT--VVGPDDYASMKEVVRRRYQRAIEEN--------------SPLPDLIIT 471 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ+ + V++ + I I +AK K E F + + + + + Sbjct: 472 DGGKGQMEVVREVIED-ELHLNIPIAGLAKDNKHRTS-ELLFGFPAQTIGIKQQSSLFRL 529 Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 + +++DE HRFAIT HR +R K S LD I GIG K LL+ F +VK I +S E Sbjct: 530 LTQIQDEVHRFAITFHRDKRSKRQVASALDSIKGIGEKTKTALLKEFKSVKRIKEASLEE 589 Query: 589 LASIEGISKKIACKIYNHFHKN 610 +A + I + A + Sbjct: 590 IAKV--IGEVKAQTVKKGLSNE 609 >gi|150024332|ref|YP_001295158.1| excinuclease ABC subunit C [Flavobacterium psychrophilum JIP02/86] gi|189038053|sp|A6GW65|UVRC_FLAPJ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|149770873|emb|CAL42338.1| Excinuclease ABC, C subunit [Flavobacterium psychrophilum JIP02/86] Length = 599 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 186/625 (29%), Positives = 308/625 (49%), Gaps = 52/625 (8%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + +P+ PGVYQ D G++LYVGKA NL+KR+ SY + + T + ++ +I I+ Sbjct: 8 LQIQTLPDNPGVYQYYDKDGKILYVGKAKNLKKRVSSYFNKVHDTAKTNVLVKKIVTIKH 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE +ALLLE N+IK L+PR+NILLRDDK++P+I I K L+ R Sbjct: 68 IVVPTETDALLLENNLIKTLQPRYNILLRDDKTYPWICI-KKEPFSRLFPTRKMVKDGSE 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175 YFGP+ S V ++ ++ + LRSC ++ ++ + CL + I C G C G Sbjct: 127 YFGPYTSFKTVSVILDLIKELYPLRSCNFDLSQKNIENYKFKVCLEYHIGNCKGACEGLE 186 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 + E Y ++ ++ L G + + + M +E A ++++ L + Q+ + Sbjct: 187 TLENYQTQINAIREILKGNFKDSMKDFKKVMTNLAQNMHFEEAQKIKEKIEILENYQSRS 246 Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 +D FS+ ++ A I G + T +K + T+ ++L + + Sbjct: 247 TIINPKITNIDVFSIVSDEAAAFINFLQISHGSIIRSHTLEIKKKLDETDQELLELAIVE 306 Query: 293 FYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 + I++ E E +K+TVP+ G+K++I+E ++ NA Sbjct: 307 LRERFQLLSREIIVPFEVEVGE------------NIKVTVPQLGDKKQILELSVRNAKFY 354 Query: 352 HTQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405 ++L E I+ K L P+ IE +DNS+I G + V VV + Sbjct: 355 RIEQLKQLQIVDPERHVNRIMAQMKKDLRLSVEPRHIECFDNSNIQGTNPVAACVVFKDG 414 Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465 K YR FN+ V+ +D A M V+ RR+ +L+ + L P+ Sbjct: 415 KPSKKDYRHFNIKT--VEGPNDFASMEEVVYRRYKRLLDENQPL--------------PN 458 Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525 ++I+DGGKGQLS+A ++ +L++ +I II IAK + E F+ L L+ + Sbjct: 459 LIIIDGGKGQLSSALKIIDELDLRGKIAIIGIAKRLE-----ELFYPGDSIPLYLDKKSE 513 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 L IQ+LR+EAHRF IT HR +R K A S ++ I GIG L++ F +VK + + Sbjct: 514 TLKIIQQLRNEAHRFGITFHRDKRSKAALNSSIETIPGIGEKTMLTLIKHFKSVKRLKLA 573 Query: 585 SPETLASIEGISKKIACKIYNHFHK 609 + ++ + GISK A KI + + K Sbjct: 574 KEKEISDLIGISK--AKKITDFYSK 596 >gi|115380119|ref|ZP_01467155.1| excinuclease ABC, C subunit [Stigmatella aurantiaca DW4/3-1] gi|115362879|gb|EAU62078.1| excinuclease ABC, C subunit [Stigmatella aurantiaca DW4/3-1] Length = 626 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 188/619 (30%), Positives = 302/619 (48%), Gaps = 38/619 (6%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQ-INNIRFTVTCTEVEALLLE 73 M D G ++YVGKA NL+ R++SY T ++ + +I + E EALLLE Sbjct: 1 MKDRRGLIIYVGKAVNLRNRVRSYFTRTGDTRAFIALLDTMLGDIETVLVHNEKEALLLE 60 Query: 74 ANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEK 133 +IK+ KPRFN+LL+DDK F + + P L R YFGP++S A+ + Sbjct: 61 NELIKKHKPRFNVLLKDDKQFISLRLDRSQPYPRLEVVRKYERDGARYFGPYSSAGAIRE 120 Query: 134 TINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSG 193 T+ + R F LR+C D V +R RPCLL QI RC PC + E Y V E FL G Sbjct: 121 TLRIINRYFHLRTCTDHVLANRKRPCLLHQIGRCPAPCVYPVPPEDYRRSVDEVGMFLEG 180 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMDCFSLYHN 250 L + + M +A + +E A RD+L A+ + D F+ Y Sbjct: 181 KAGELVDGLRARMKRAASELKFEEAARLRDQLQAIERSLERQKVATTDFKDQDVFASYRE 240 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAE 310 + + G+ G F + + S+ + PE +LL E E Sbjct: 241 GDRILFYVLWVRQGRLNGGQAFPFGSQEFPDEELLASFVNLYYDQGSFVPEEVLLPLEPE 300 Query: 311 ETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFT 370 LE ++ G KV++ VPK+GEK +++ A NA ++ ++ T+ +L Sbjct: 301 SLEGLEGLLSERKGQKVRVLVPKRGEKHELVLMAHKNAEQAFVERKRTKDETDAVLGRLQ 360 Query: 371 KKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAM 430 +K L + P+R+E +D SH G S V V V + K++YR++ + ++ QDD A Sbjct: 361 QKLGLRNYPRRMECFDISHFQGSSIVASQVAVTDGETDKSRYRRYKIKT--LEKQDDFAS 418 Query: 431 MRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVEN 490 M V+ RR + + ++ PD++++DGGKGQL++A +K L VE Sbjct: 419 MYEVISRRLKRGQEEKD---------------LPDLLVIDGGKGQLASAHAAMKDLGVEG 463 Query: 491 RITIISIAK---------GPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 + ++ +AK + + E+ F + + + +VL ++ + R+RDEAHRF Sbjct: 464 -VDVVGLAKSRDQEVFDRDAESARSPERVFVLGRKDPIVLPQNSAEIFMLTRMRDEAHRF 522 Query: 541 AITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AIT RK RK +S L++I G+G R++LLL+ FG++K + +S E LA + G + Sbjct: 523 AITFQRKDLRKSRIHSALEDIPGVGEGRRKLLLRHFGSLKRVGEASIEDLAEVVG--PSM 580 Query: 600 ACKIYNHFH---KNTSHTP 615 A +++ H + + P Sbjct: 581 AERVHAGLHGHPEEDASDP 599 >gi|188995802|ref|YP_001930054.1| excinuclease ABC subunit C [Porphyromonas gingivalis ATCC 33277] gi|229558463|sp|B2RM62|UVRC_PORG3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|188595482|dbj|BAG34457.1| excinuclease ABC C subunit [Porphyromonas gingivalis ATCC 33277] Length = 600 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 186/620 (30%), Positives = 296/620 (47%), Gaps = 48/620 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PG YQ D G+V+YVGKA NL++R+ SY + + + ++ QI +I++ V Sbjct: 13 TLPEKPGCYQYFDEDGKVIYVGKAKNLRRRVSSYFYKEHADRKTRILVRQIRSIKYIVVD 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E +ALLLE ++IK +PR+N+LL+D K++P I+I + P ++ RD YFGP Sbjct: 73 SEGDALLLENSLIKEYQPRYNVLLKDGKTYPSIVI-KREPFPRIFATRDIKKDGSEYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 + + + ++ + +R+C + + + R R CL + IK+C GPC G +S + Sbjct: 132 YPGALIAKGMLRLVKEIYPIRTCKLDLREEKIRQGRYRVCLQYHIKKCKGPCIGNQTSNE 191 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237 Y V E + L G H L M + + +E A I ++R+ L + + Sbjct: 192 YESNVSEIRDLLRGNLHRLVRMYRDRMQAYSEELRFEEAQICKERIELLERYEAKHTVVP 251 Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + +D FS +++ A I G T + E + ++L+ + + Sbjct: 252 RNIDNVDVFSYDEDEHTAYINYMHIEHGGINRVYTLEYRKQIEESKEELLAAAITELRQR 311 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA------HR 350 + ++ E + T+P++G+KRK++E + N Sbjct: 312 FESNAHEIVLPFDTGWQTGE---------SITTTIPRRGDKRKLLELSEKNVAQYKLDKL 362 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 +KL+ E I+ K L PK IE +DNS+I G S V VV K Sbjct: 363 KRAEKLNPEQRALHIVHGIQKDLHLDRPPKHIECFDNSNIQGTSPVAACVVFKMGKPSKK 422 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YRKF++ V+ +D A MR ++ R +++L + PD++++D Sbjct: 423 DYRKFHVKT--VEGPNDFASMREIISRHYTRLTEEN--------------LPLPDLIVVD 466 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQLSAA L KL + +I II +A+ + E FF K L+L+ + L I Sbjct: 467 GGKGQLSAAYETLDKLGLIGKIPIIGLAERLE-----EIFFPKDPVPLILDKKSETLKVI 521 Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 Q LRDEAHRF I HR R KK S LD I GIG K LL+ F +VK I + E L Sbjct: 522 QHLRDEAHRFGIGFHRDVRSKKQIQSELDNIKGIGKKTKEDLLRHFKSVKRIRSAEEEEL 581 Query: 590 ASIEGISKKIACKIYNHFHK 609 +++ I + A +Y K Sbjct: 582 SAL--IGRNKAKLLYEGLRK 599 >gi|325846503|ref|ZP_08169418.1| excinuclease ABC, C subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481261|gb|EGC84302.1| excinuclease ABC, C subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 615 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 203/621 (32%), Positives = 319/621 (51%), Gaps = 26/621 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 +++P+ PGVY M + ++YVGKA NL+KR+ Y ++ N ++ M+S IN + Sbjct: 8 KLKELPDLPGVYIMRNSQDEIIYVGKAINLKKRVSQYFDNNQNKGRKVLAMVSHINKFEY 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 + EVEAL+LE+N+IK+ +P++NI+LRDDK +PYI IT K K P + K R+ +G Sbjct: 68 IIVENEVEALVLESNLIKKNRPKYNIVLRDDKQYPYIKIT-KEKYPRIQKVRNVKKDKGY 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT--RPCLLFQIKRCSGPCTGEISSE 178 YFGP+ AV I + R+C + + + RPCL + I RC GPC G + + Sbjct: 127 YFGPYPDAYAVNDVIELFHNLYPFRTCNLNFDKGQKLDRPCLNYYIHRCKGPCVGRENEK 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 KYME + + K FL ++ + + + MN+A+ D+E+A +RD ALS I Sbjct: 187 KYMENMAKVKDFLENKSNEIPNLVIKKMNKASQILDFENAAKYRDYHMALSTISQKQKVT 246 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + +D ++ +Q F G+ F +K D + I++ F++QFY Sbjct: 247 TTNGDDIDIIAMSKGLFYVTMQVFFMRDGKIVDREHFIIKDDYREKESDIMASFMKQFYL 306 Query: 296 D-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HR 350 + P+ IL+ + E + L+ + G KV I PK G+K+++++ A NA + Sbjct: 307 NLMYVPKEILVHKLPSELNTLKSFIENKKGGKVTINCPKLGKKKELVDMAFRNASDMMRK 366 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E L + L I RIE YD S+ G +VG MVV + Sbjct: 367 YEKRIEEKERKKHSGLNGLKEILNLKSIG-RIEAYDISNTSGVQSVGSMVVFQNGIAERK 425 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 +YRKF + ++ DD + VL RRF++ K +N N + F PD++++D Sbjct: 426 EYRKFKIKT--IEGPDDYHSLEEVLTRRFNRAKKEIKNNNTYT-----GFGKLPDLILMD 478 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ+ +A+ VL LN I + + K K + + + E + + RDP+ I Sbjct: 479 GGKGQVKSAKKVLADLNFS--IEVAGLVKDDKHTTRA---IIYENEEIPIKKRDPVYKLI 533 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 +++EAHRFAI HRK + S LD INGIG +K LL+ F T+ I ++S E L Sbjct: 534 YEIQEEAHRFAINYHRKLMSQTMKKSELDNINGIGKSKKENLLRHFKTINNIKKASLEEL 593 Query: 590 ASIEGISKKIACKIYNHFHKN 610 +E I K A +I +F N Sbjct: 594 MEVELIGKSQALEIIKYFKLN 614 >gi|34541586|ref|NP_906065.1| excinuclease ABC subunit C [Porphyromonas gingivalis W83] gi|81416896|sp|Q7MTG8|UVRC_PORGI RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|34397903|gb|AAQ66964.1| excinuclease ABC, C subunit [Porphyromonas gingivalis W83] Length = 599 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 186/620 (30%), Positives = 295/620 (47%), Gaps = 48/620 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PG YQ D G+V+YVGKA NL++R+ SY + + + ++ QI +I++ V Sbjct: 12 TLPEKPGCYQYFDEDGKVIYVGKAKNLRRRVSSYFYKEHADRKTRILVRQIRSIKYIVVD 71 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E +ALLLE ++IK +PR+N+LL+D K++P I+I + P ++ RD YFGP Sbjct: 72 SEGDALLLENSLIKEYQPRYNVLLKDGKTYPSIVI-KREPFPRIFATRDIKKDGSEYFGP 130 Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 + + + ++ + +R+C + + + R R CL + IK+C GPC G +S + Sbjct: 131 YPGALIAKGMLRLVKEIYPIRTCKLDLREEKIRQGRYRVCLQYHIKKCKGPCIGNQTSNE 190 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237 Y V E + L G H L M + +E A I ++R+ L + + Sbjct: 191 YESNVSEIRDLLRGNLHRLVRMYRDRMQVYSEGLRFEEAQICKERIELLERYEAKHTVVP 250 Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + +D FS +++ A I G T + E + ++L+ + + Sbjct: 251 RNIDNVDVFSYDEDEHTAYINYMHIEHGGINRVYTLEYRKQIEESKEELLAAAITELRQR 310 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA------HR 350 + ++ E + T+P++G+KRK++E + N Sbjct: 311 FESNAHEIVLPFDTGWQTGE---------SITTTIPRRGDKRKLLELSEKNVAQYKLDKL 361 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 +KL+ E I+ K L PK IE +DNS+I G S V VV K Sbjct: 362 KRAEKLNPEQRALHIVHGIQKDLHLDRPPKHIECFDNSNIQGTSPVAACVVFKMGKPSKK 421 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YRKF++ V+ +D A MR ++ R +++L + PD++++D Sbjct: 422 DYRKFHVKT--VEGPNDFASMREIISRHYTRLTEEN--------------LPLPDLIVVD 465 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQLSAA L KL + +I II +A+ + E FF K L+L+ + L I Sbjct: 466 GGKGQLSAAYETLDKLGLIGKIPIIGLAERLE-----EIFFPKDPVPLILDKKSETLKVI 520 Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 Q LRDEAHRF I HR R KK S LD I GIG K LL+ F +VK I + E L Sbjct: 521 QHLRDEAHRFGIGFHRDVRSKKQIQSELDNIKGIGKKTKEDLLRHFKSVKRIRSAEEEEL 580 Query: 590 ASIEGISKKIACKIYNHFHK 609 +++ I + A +Y K Sbjct: 581 SAL--IGRNKAKLLYEGLRK 598 >gi|313204554|ref|YP_004043211.1| excinuclease ABC subunit c [Paludibacter propionicigenes WB4] gi|312443870|gb|ADQ80226.1| Excinuclease ABC subunit C [Paludibacter propionicigenes WB4] Length = 605 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 167/622 (26%), Positives = 290/622 (46%), Gaps = 46/622 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PGVYQ + ++YVGKA NL+KR+ SY + + + ++ I ++++ V T Sbjct: 14 LPDKPGVYQYFNANDEIIYVGKAKNLKKRVSSYFNKVHEQGKTNVLVKNIVSLKYIVVET 73 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E +ALLLE N+IK+ +PR+N+LL+D K++P I IT+ P ++K R+ G YFGP+ Sbjct: 74 EEDALLLENNLIKQYQPRYNVLLKDGKTYPSICITN-EPFPRIFKTRNIYKNGGQYFGPY 132 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFR-----HRTRPCLLFQIKRCSGPCTGEISSEKY 180 +S + + + F +R+C + + + + CL + I +C GPC G+ + +Y Sbjct: 133 SSTFTINSLLEIVHDLFPIRTCKWMLTKENIQAGKFKVCLQYHIHKCKGPCEGKETEAEY 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + + ++ + G + + + + M + +E A + + + ++ + Sbjct: 193 KLNIEQIRQIIQGDANEISKMLLEQMQLLASEYKFEEAHQLKLKYDLIEGYKSKSIIANT 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D F+ N+N A + G T K + +L + + Sbjct: 253 VVENTDVFAYDENENSAYVNILRIAKGSIVQGYTIEYKKRLDEQKEDLLLMAIVELRERF 312 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 ++ + +TVP++G+++K+++ +L N + KL Sbjct: 313 QSKSKEIIVP----------FKMDIPIAGITVTVPQRGDRKKLLDLSLQNVRQYKLDKLK 362 Query: 358 T------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 + +LK + L P IE +DNS+I G AV VV + K Sbjct: 363 QAEKLNPDQRAIQLLKTIQEALHLDKPPLTIECFDNSNISGSDAVAACVVFKKAKPSKKD 422 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YRK+N+ V DD A M+ V+ RR+S+++ E PD++I DG Sbjct: 423 YRKYNIKT--VVGPDDYASMKEVVRRRYSRMLNEE--------------SPLPDLIIADG 466 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 G GQ+ + V++ ++ I I +AK K E F +A+ L + DP+ + Sbjct: 467 GVGQMEVIRQVIED-ELKISIPIAGLAKDSKHHT-RELLFGFPAKAIGLKINDPLFKLLA 524 Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 ++DE HRFAI+ HR +R K+ S LD I GIG K L++ F +VK I +S + L Sbjct: 525 SMQDEVHRFAISFHRDKRSKSQTASELDTITGIGEKTKNDLIKHFKSVKRIKSASLDELT 584 Query: 591 SIEGISKKIACKIYNHFHKNTS 612 I K A +Y+HF N S Sbjct: 585 EA--IGKSRASIVYSHFKANES 604 >gi|212696065|ref|ZP_03304193.1| hypothetical protein ANHYDRO_00601 [Anaerococcus hydrogenalis DSM 7454] gi|212676694|gb|EEB36301.1| hypothetical protein ANHYDRO_00601 [Anaerococcus hydrogenalis DSM 7454] Length = 615 Score = 463 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 203/621 (32%), Positives = 319/621 (51%), Gaps = 26/621 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 +++P+ PGVY M + ++YVGKA NL+KR+ Y ++ N ++ M+S IN + Sbjct: 8 KLKELPDLPGVYIMRNSQDEIIYVGKAINLKKRVSQYFDNNQNKGRKVLAMVSHINKFEY 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 + EVEAL+LE+N+IK+ +P++NI+LRDDK +PYI IT K K P + K R+ +G Sbjct: 68 IIVENEVEALVLESNLIKKNRPKYNIVLRDDKQYPYIKIT-KEKYPRIQKVRNVKKDKGY 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT--RPCLLFQIKRCSGPCTGEISSE 178 YFGP+ AV I + R+C + + + RPCL + I RC GPC G + + Sbjct: 127 YFGPYPDAYAVNDVIELFHNLYPFRTCNLNFDKGQKLERPCLNYYIHRCKGPCVGRENEK 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 KYME + + K FL ++ + + + MN+A+ D+E+A +RD ALS I Sbjct: 187 KYMENMAKVKDFLENKSNEIPNLVIKKMNKASQILDFENAAKYRDYHMALSTISQKQKVT 246 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + +D ++ +Q F G+ F +K D + I++ F++QFY Sbjct: 247 TTNGDDIDIIAMSKGLFYVTMQVFFMRDGKIVDREHFIIKDDYREKESDIMASFMKQFYL 306 Query: 296 D-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HR 350 + P+ IL+ + E + L+ + G KV I PK G+K+++++ A NA + Sbjct: 307 NLMYVPKEILVHKLPSELNTLKSFIENKKGGKVTINCPKLGKKKELVDMAFRNASDMMRK 366 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E L + L I RIE YD S+ G +VG MVV + Sbjct: 367 YEKRIEEKERKKHSGLNGLKEILNLKSIG-RIEAYDISNTSGVQSVGSMVVFQNGIAERK 425 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 +YRKF + ++ DD + VL RRF++ K +N N + F PD++++D Sbjct: 426 EYRKFKIKT--IEGPDDYHSLEEVLTRRFNRAKKEIKNNNTYT-----GFGKLPDLILMD 478 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ+ +A+ VL LN I + + K K + + + E + + RDP+ I Sbjct: 479 GGKGQVKSAKKVLADLNFS--IEVAGLVKDDKHTTRA---IIYENEEIPIKKRDPVYKLI 533 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 +++EAHRFAI HRK + S LD INGIG +K LL+ F T+ I ++S E L Sbjct: 534 YEIQEEAHRFAINYHRKLMSQTMKKSELDNINGIGKRKKENLLRHFKTINNIKKASLEEL 593 Query: 590 ASIEGISKKIACKIYNHFHKN 610 +E I K A +I +F N Sbjct: 594 MEVELIGKSQALEIIKYFKLN 614 >gi|320107636|ref|YP_004183226.1| excinuclease ABC subunit C [Terriglobus saanensis SP1PR4] gi|319926157|gb|ADV83232.1| excinuclease ABC, C subunit [Terriglobus saanensis SP1PR4] Length = 665 Score = 463 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 192/670 (28%), Positives = 313/670 (46%), Gaps = 82/670 (12%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH--THRITHMISQINNIR 59 +P PGVY + V+YVGKA NL+ R++SY N + ++ + ++ Sbjct: 6 KIRTLPTQPGVYLYKNAEDEVIYVGKAKNLRSRVRSYFLEANQLANRKTGSLMREAVDLE 65 Query: 60 FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG 119 + + E EAL LE N+IK+ KPRFNILLRDDK++PY+ +T + + P ++ R Sbjct: 66 YILVANEREALALENNLIKQRKPRFNILLRDDKTYPYVKLTVRDRHPKVFVTRKLKKDGA 125 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSE 178 YFGP+ + + ++ + R+F + SC + R+ RPCL + IKRC PC ++ + Sbjct: 126 LYFGPYFPGNLAYRLVDLIHRSFLIPSCKVDLSRYHPRPCLEYYIKRCLAPCVENLVTPD 185 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y + + + + FL G L+++I M++A E YE A RD++ + +Q Sbjct: 186 TYRDAIRDVQLFLEGKESELEDRITARMHEAAASEQYELAARLRDQIVTVHQLQEKQRIA 245 Query: 239 YNRM---DCFSLYHNKNLACIQTCFFHFGQ---NRGTCTFFLKTDSESTNAQ-------- 284 D F + ++ + G+ R L E + Sbjct: 246 STDDSDADVFGFHFANDMLAVNQFHMRSGKIVDRRDFFFEDLPEILEDDEPETTETIDSL 305 Query: 285 -----------------------------------ILSYFLRQFYTDKP-CPENILLSEE 308 + FL+Q Y D+P P I++ E Sbjct: 306 SLSSSSTPLSSRSEAEGSAFLPDQAEDTQTFNPSNFFAAFLKQLYLDQPYVPRTIMVPAE 365 Query: 309 AEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI-SHQMILK 367 + LL + G+KV+I P++GEKR +++ NA +S+ Q+ T S I Sbjct: 366 FRDRDLLATLLCDRTGHKVEILAPQRGEKRSLVDLVCQNAKQSYDQRFRTLQPSKAAIAA 425 Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427 L PKRIE +D SHI G V MVV + K+ YRKF + N V DD Sbjct: 426 SLQDALGLADPPKRIECFDISHIQGAETVASMVVWEDGEMKKSDYRKFKV--NSVSGVDD 483 Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487 A M +L RR+S+L ++ +P ++++DGG GQL AA L++L Sbjct: 484 FASMHEILTRRYSKLQAEKK--------------PFPSLILIDGGLGQLHAAYAALEQLG 529 Query: 488 VENRITIISIAKGPKRSAGMEKFFVKKGE--ALVLNMRDPILYFIQRLRDEAHRFAITTH 545 + + + SIAK E +V E +VL+ R P+L+ +Q +RDE+HRFA+T H Sbjct: 530 ITLQ-PLASIAKRE------EIIYVHGQEEDPVVLDRRSPVLHLVQHIRDESHRFAVTYH 582 Query: 546 RKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 RKRR+ + + L I G+GP ++ L++ FG+++ I + P+ L ++ ++ A KI Sbjct: 583 RKRREIRDRETELLPIPGVGPRTRQRLIEHFGSIRGIKLAGPDALTAV--VNAATAEKIR 640 Query: 605 NHFHKNTSHT 614 + + Sbjct: 641 AYLNAERDAA 650 >gi|260061493|ref|YP_003194573.1| excinuclease ABC subunit C [Robiginitalea biformata HTCC2501] gi|88785625|gb|EAR16794.1| excinuclease ABC, C subunit [Robiginitalea biformata HTCC2501] Length = 596 Score = 463 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 184/624 (29%), Positives = 302/624 (48%), Gaps = 50/624 (8%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + +PE PGVYQ D R+LYVGKA NL+KR+ SY + + + ++ +I +IR Sbjct: 8 IQLKTLPESPGVYQFYDADQRMLYVGKAKNLKKRVGSYFTKKHDSGKTRVLVKKIRSIRH 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE +ALLLE N+IK +PR+N+LLRDDKS+P++ I + P ++ R+ Sbjct: 68 IVVPTESDALLLENNLIKEHQPRYNVLLRDDKSYPWLCI-KNERFPRIFPTRNRIEDGSE 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175 YFGP+ S+ V + ++ + LR+C + + + + CL + + C GPC G Sbjct: 127 YFGPYTSMKTVRALLELIRSVYPLRTCNYDLAAEKIRDGKYKVCLEYHLGNCLGPCEGLQ 186 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 YM V + ++ + G + + R M Q + +E A ++++ L + Q+ + Sbjct: 187 DEASYMRQVDDIRQIIRGNFGSSLQYFRRRMKQLAGETRFEEAQQIKEKVEILENYQSKS 246 Query: 236 DSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 ++ +D FS+ + A + G + T +K E ++ +L+ + Sbjct: 247 TVVHPKITDVDVFSIVSDPTHAYVNYMQIAHGLVVRSHTIEIKKKLEESDEDLLALAIVT 306 Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 ++ + + F V++TVP +G+KRKI+E +L NA Sbjct: 307 LRERFGS-----------DSEEVYLPFEVPVAGPVRVTVPSRGDKRKIVELSLRNAKFFR 355 Query: 353 TQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 ++ + +++ K L P+ IE +DNS+I G + V VV + Sbjct: 356 QERFKQIRITDPDRHVNRLMEQMKKDLRLSEEPRHIECFDNSNIQGSNPVAACVVFRDGK 415 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 K +YR FN+ V+ DD A M V+ RR+ +++ ++L P + Sbjct: 416 PSKKEYRHFNIRT--VEGPDDFASMTEVVHRRYRRMLDQGDSL--------------PQL 459 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526 +++DGGKGQLSAA L L + I II IAK + E +F K L L+ + Sbjct: 460 IVVDGGKGQLSAALKSLDVLGLRGTIAIIGIAKRLE-----EIYFPKDPIPLYLDKKSET 514 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 L IQ+LR+EAHRF IT HRK+R A S L++I+G+G R LL+ F +VK I +S Sbjct: 515 LRVIQQLRNEAHRFGITHHRKKRSMAAISSALEQIDGVGEKTARQLLRKFKSVKRIRAAS 574 Query: 586 PETLASIEGISKKIACKIYNHFHK 609 + A KIY + Sbjct: 575 EA--ELAAEVGPSKARKIYESLRE 596 >gi|303233380|ref|ZP_07320049.1| excinuclease ABC, C subunit [Atopobium vaginae PB189-T1-4] gi|302480509|gb|EFL43600.1| excinuclease ABC, C subunit [Atopobium vaginae PB189-T1-4] Length = 686 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 180/634 (28%), Positives = 289/634 (45%), Gaps = 49/634 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PG Y ++ V+YVGKA NL+ R+ Y+ ++ +I M+ ++ + V Sbjct: 70 HVPEEPGCYLWKNVHDTVIYVGKAKNLRARMTQYVQLSDDRLKIPRMMLEVAGFDYIVVE 129 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EAL+LE N+I KP +N+ +DDKS+PYI +T PA+ R+ YFGP Sbjct: 130 TEHEALVLERNLIGYYKPYYNVDFKDDKSYPYIALTMGTPFPAIKYTREQHDKSSLYFGP 189 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP---------------------CLLFQ 163 + A +TI L++ + + V+R T+ C + Sbjct: 190 YTDSHAARETIEILRKAAPICATTCPVWRKMTKHFAKHPEDVQVAQLTLATSEKSCFDYH 249 Query: 164 IKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRD 223 + + G C G IS E Y + V + FL G ++ E + + M+ A +E A + Sbjct: 250 VGKAPGVCVGAISREDYAQHVALVRDFLRGKRTSIYETLTQQMHDAAADLAFEQAARIKR 309 Query: 224 RLAALSHIQNHNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSES 280 RL LS +Q+ + + D Y + ++ + G F L + + Sbjct: 310 RLDVLSSLQDSQQVVLSSNTSADVIGFYRQETISAVCVFIVREGSVIRANDFILNSGMDV 369 Query: 281 TNAQILSYFLRQFYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRK 339 ++ F++++Y P I LS ++ L + G+ I VP++GEK+K Sbjct: 370 PEVELQESFIKRYYEKTDDIPAEIQLSCTLDDECALTQWLSCRAGHACSIHVPQRGEKKK 429 Query: 340 IIEQALINAHRSHTQKL----STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSA 395 ++E A+ NA + + + ++ L + ALP IP+RIE +D S + G Sbjct: 430 LLETAMRNAQHALVRYMVRTGYSDDRTNTALLELESALALPAIPQRIECFDISTLHGYFT 489 Query: 396 VGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK 455 V MVV K+ YR F + + +D M VL RR+S Sbjct: 490 VASMVVFINGKPAKHLYRHFKIRTK-LDEANDFVSMSEVLGRRYS-----------AKNL 537 Query: 456 QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG 515 +F P +++LDGGK QL+AA LK L + + +AK + E F Sbjct: 538 ASSAFGPAPQLLVLDGGKPQLTAALTQLKALGISLN--VCGLAKSDE-----EVFVPWDT 590 Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQS 574 +VL LY I+ +RDE+HRFAIT HR R KA S LDE+ G+GP RK+ LL Sbjct: 591 TPIVLPSGSASLYLIKYIRDESHRFAITFHRYLRDKAMSKSILDEVEGVGPKRKKQLLAH 650 Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 FG++K + ++ + + GI K +A ++ Sbjct: 651 FGSMKRLRSATVADIEQVAGIPKDVARAVWQTLQ 684 >gi|312891270|ref|ZP_07750789.1| excinuclease ABC, C subunit [Mucilaginibacter paludis DSM 18603] gi|311296230|gb|EFQ73380.1| excinuclease ABC, C subunit [Mucilaginibacter paludis DSM 18603] Length = 608 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 178/629 (28%), Positives = 309/629 (49%), Gaps = 52/629 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRF 60 + + +P PGVYQ + ++Y+GKA +L+ R+ SY + + + + ++S+I NI F Sbjct: 13 AIKNIPHKPGVYQFWNTDNELIYIGKAKDLRNRVGSYFNKDLNVNGKTRVLVSKIRNITF 72 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T+ TEV+A LLE ++IK+ +PR+NILL+DDK++P+I+I P +Y R Sbjct: 73 TIVDTEVDAWLLENSLIKKHQPRYNILLKDDKTYPWIII-KNENYPRIYWTRTIVRDGSK 131 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEI 175 Y GP+ASV + ++ ++ T+ LR+C ++ + + CL +Q+ C GPC Sbjct: 132 YLGPYASVSMMHAILSLIRETYPLRTCSLPLTKPNIDAGKFKVCLEYQLGNCKGPCQNYQ 191 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 + + Y + E K L+G + + + ++ A L ++E A + + L + Q+ + Sbjct: 192 TEDDYASNIEEIKDILNGKIGTILKNLKADIENAALNMNFELAHQLKRKFDLLENYQSKS 251 Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 +D FS+ + A + G T T LK + + ++L++ + + Sbjct: 252 TVVNSSITDIDVFSIASEEKYAFVNFLKVMNGTIIQTQTIELKKRLDEDDEELLTFAITE 311 Query: 293 FYTDKPCP-ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA--- 348 F + I++ + + +K TVPK GEK+K+++ + N Sbjct: 312 FRERYSSKAKEIIVPFDIDLDD-----------PHIKFTVPKLGEKKKLLDLSQKNVTFF 360 Query: 349 ---HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405 +KL+ E+ + +L K + +P+ IE +DNS+ G V +VV + Sbjct: 361 KRDKIEQYEKLNPEVRSERLLTQMMKDLRMNQLPRHIECFDNSNFQGKYPVSAIVVFKDG 420 Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465 K YR FN+ V+ +D A M + RR+ +++ L P Sbjct: 421 KPSKKDYRHFNVKT--VEGPNDFATMEEAVHRRYRRMLDEGGEL--------------PQ 464 Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525 ++++DGGKGQLS+A LK L ++ +IT+I IAK + E F+ + L+ + Sbjct: 465 LIVIDGGKGQLSSALKSLKLLGIDKQITVIGIAKRLE-----ELFYPGDQYPMYLDKKSE 519 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 L IQ LRDEAHRF IT HRK+R K + L+ I+GIG LL+ F +VK I + Sbjct: 520 TLKVIQHLRDEAHRFGITFHRKKRDKGTLATELELIDGIGKTSAEKLLKYFKSVKKIREA 579 Query: 585 SPETLASIEGISKKIACKIYNHFHKNTSH 613 + E L + ++ K A I +F ++ Sbjct: 580 TTEELQEV--VNTKQAKAITQYFTQDKQE 606 >gi|332881633|ref|ZP_08449281.1| excinuclease ABC, C subunit [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680272|gb|EGJ53221.1| excinuclease ABC, C subunit [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 609 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 174/618 (28%), Positives = 298/618 (48%), Gaps = 46/618 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P+ PG YQ L+ G ++YVGKA NL++R+ SY ++ + + ++S+I +I++ V Sbjct: 19 NLPDSPGCYQYLNDEGEIIYVGKAKNLKRRVYSYFSKDHQSRKTAMLVSKIRDIKYIVVN 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E +ALLLE N+IKR KP +N+LL+DDK++P I +T+ P ++K R YFGP Sbjct: 79 SEEDALLLENNLIKRYKPHYNVLLKDDKTYPSICVTN-EYFPRIFKTRHIVRNGSVYFGP 137 Query: 125 FASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + + + ++ RT L +++ + CL + IK C GPC G S E+ Sbjct: 138 YSHIPTLNALLELIKNLYPLRTCHLALTPENIRSGKFNVCLEYHIKNCKGPCIGAQSREE 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237 Y++ + EAK+ L G + + M + +E A + + L ++ ++ Sbjct: 198 YLQSIQEAKEILKGNTAEISRNMLVEMQALAAEMRFEEAQAIKRKYDLLESYRSKSEVVS 257 Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + + +D FS+ + N A I G TF K + ++L+ + + Sbjct: 258 NVLHNIDVFSIEDDGNAAYINYLHVTNGSINQAFTFEYKKRMNESPEELLTLGIAEMRER 317 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 +++ + + V TVP++G+K+K++E +++N + +L Sbjct: 318 YKSRSKEIITPFPIDVEME----------GVTFTVPQRGDKKKLLELSILNVKQYKLDRL 367 Query: 357 ST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 E ++K+ + L +P RIE +DNS+I G AV VV + K Sbjct: 368 KQAEKLNPEQKSVRLMKEIQQAMHLEKLPMRIECFDNSNISGTDAVAACVVFKKCKPSKQ 427 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YRK+N+ V DD A M+ V+ RR+S+ + + L PD++I D Sbjct: 428 DYRKYNIKT--VVGPDDYASMKEVVRRRYSRAVAEQGEL--------------PDLIITD 471 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GG+GQ+ + V++ + RI I +AK + E F + + P+ + Sbjct: 472 GGRGQMEVVREVVEDE-LGLRIPIAGLAKDDRHRT-NELLFGFPPIVIGMKTDSPVFRLM 529 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 +++DE HRFAIT HR +R K S LD I GIG K LL+ F +VK I +S + L Sbjct: 530 TQIQDEVHRFAITFHRDKRSKHQTVSALDTIKGIGEKTKTQLLKRFKSVKRIREASFDEL 589 Query: 590 ASIEGISKKIACKIYNHF 607 A+ I A I + Sbjct: 590 AA--EIGPAKAKIIQENL 605 >gi|319947169|ref|ZP_08021403.1| excinuclease ABC subunit C [Streptococcus australis ATCC 700641] gi|319747217|gb|EFV99476.1| excinuclease ABC subunit C [Streptococcus australis ATCC 700641] Length = 580 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 161/596 (27%), Positives = 280/596 (46%), Gaps = 41/596 (6%) Query: 26 GKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLKPRFN 85 GKA NL+ R++SY ++ T + ++S+I + F VT + +EALLLE N+IK KP++N Sbjct: 2 GKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFIVTESNIEALLLEINLIKENKPKYN 60 Query: 86 ILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLR 145 I+L+DDKS+P+I IT+ + P L R G YFGP+ V A + L R F R Sbjct: 61 IMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLYFGPYPDVGAANEIKRLLDRIFPFR 119 Query: 146 SCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARN 205 C + ++ C + + +C + E FL G + + + + Sbjct: 120 KCTNPP----SKVCFYYHLGQCMAHTVCHKDEAYFKSMAQEVSDFLKGQDDKIIDDLKLK 175 Query: 206 MNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNRMDCFSLYHNKNLACIQTCFFH 262 M A ++E A +RD + A+ ++ + D F Y +K C+Q F Sbjct: 176 MTTAAQNMEFERAAEYRDLIQAIGTLRTKQRVMAKDLQNRDVFGYYVDKGWMCVQVFFVR 235 Query: 263 FGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQ 322 G+ ++ + P IL+ ++ +E ++ + K Sbjct: 236 QGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHLIPNEILIPQDIDEEAVKALVDTKV 295 Query: 323 YGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLSTEISHQMILKDFTKKFALPHI 378 P++GEK++++ A+ NA + + Q +++ K +P Sbjct: 296 LK-------PQRGEKKQLVNLAIKNARVSLEQKFNLLEKSMEKTQGAIENLGKLLQIPTP 348 Query: 379 PKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERR 438 RIE +DNS+IMG S V MVV K YRK+ + V DD A MR V+ RR Sbjct: 349 V-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRKYKIKT--VVGPDDYASMREVIRRR 405 Query: 439 FSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIA 498 +S+++++ + PD++++DGG+GQ++ A+ V+++ + I I + Sbjct: 406 YSRVMRDG--------------LTPPDLIVIDGGQGQVNIAKQVIQE-ELGLDIPIAGLQ 450 Query: 499 KGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP-L 557 K K E F + + L+ + +QR++DE HRFAIT HR+ R K ++S L Sbjct: 451 KNDKHQT-HELLFGDPLQVIELSRTSQEFFLLQRIQDEVHRFAITFHRQLRSKNSFSSQL 509 Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 D I G+GP RK+LL++ F ++ I ++ + + ++ GI + +A + + Sbjct: 510 DGIEGLGPKRKQLLMKHFKSLTKIKEATVDEIVTV-GIPRAVAEAVQAKLQQGKQE 564 >gi|118497276|ref|YP_898326.1| excinuclease ABC, subunit C [Francisella tularensis subsp. novicida U112] gi|194323579|ref|ZP_03057356.1| excinuclease ABC, C subunit [Francisella tularensis subsp. novicida FTE] gi|208779069|ref|ZP_03246415.1| excinuclease ABC, C subunit [Francisella novicida FTG] gi|189038056|sp|A0Q5Q7|UVRC_FRATN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|118423182|gb|ABK89572.1| excinuclease ABC, subunit C [Francisella novicida U112] gi|194322434|gb|EDX19915.1| excinuclease ABC, C subunit [Francisella tularensis subsp. novicida FTE] gi|208744869|gb|EDZ91167.1| excinuclease ABC, C subunit [Francisella novicida FTG] Length = 612 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 185/615 (30%), Positives = 317/615 (51%), Gaps = 30/615 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + GVY+MLD G ++YVGKA NL+ R+ SY + M+ QI I T+T Sbjct: 17 NLTTHSGVYRMLDKHGEIIYVGKAKNLKNRVNSYFSKGAKDSKTLMMVEQIARIEITITP 76 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSYFG 123 ++ EA LLE N+IK+ +P++NIL +DDKS+PY++I+ + K P + +R S +G FG Sbjct: 77 SDYEAYLLENNLIKQHRPKYNILFKDDKSYPYLVIS-RDKFPRVSFYRGKSAYKKGQCFG 135 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ S+ +V+ T+N++Q+ F +R C +S ++ R RPCL +QIKRC PC G +S ++Y E Sbjct: 136 PYVSISSVKNTLNTIQKIFPIRQCENSYYKSRVRPCLQYQIKRCLAPCVGLVSQQQYDEQ 195 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR-- 241 + KKFL+G + E+I+ M QA+ +YE A ++RD+L L +Q Sbjct: 196 LAILKKFLAGKFSTVLEEISAKMYQASEDMEYEKAQVYRDQLVVLRKLQQQQIVDIQEDK 255 Query: 242 -MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D +Y + A I G + + I+ FL FY Sbjct: 256 TFDVIGIYMQDSYASIALLQIQNGDVVADRHWSID-AKGQDKTSIMHAFLSHFYLGDEIR 314 Query: 301 ---ENILLSEEAEETSLLEISF--FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ + E + ++ ++ G + + + K ++ A +NA + Sbjct: 315 NIWPKNIILSKVEFADITDLMNSISQKIGQAINWIIAPAADNLKWLKLAEVNARQKLNIY 374 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 S++ +Q L+ + L KRIE +D SH G + + VV + G + +R++ Sbjct: 375 TSSKSQYQKRLESLKEFLELEKDIKRIECFDISHFQGEATIASCVVYTDEGEDRKSHRRY 434 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ +K DD A + + RR S ++ + PDV+I+DGGKGQ Sbjct: 435 NIKD--IKAGDDYAAIYQAVSRRVSSGLEADN---------------LPDVMIIDGGKGQ 477 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLR 534 + A+ V ++ +++++ ++S+ KG +R +G EK + L+ +P ++++R Sbjct: 478 IHQAEAVFREFGIQDKVQLVSLGKGVERISGKEKIYKGFDDTEYTLDEHNPGFLLLRQVR 537 Query: 535 DEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 D AH AI RK+ S ++EI G+GP R++ L+ FG + +SR+S + +A ++ Sbjct: 538 DSAHDHAIKGQRKKVSANRQSSIIEEIEGVGPKRRKALIMYFGGWQELSRASVDEIAKVK 597 Query: 594 GISKKIACKIYNHFH 608 GISKK+A +I+ FH Sbjct: 598 GISKKLAQEIWECFH 612 >gi|254880988|ref|ZP_05253698.1| excinuclease ABC subunit C [Bacteroides sp. 4_3_47FAA] gi|319639996|ref|ZP_07994723.1| excinuclease ABC subunit C [Bacteroides sp. 3_1_40A] gi|254833781|gb|EET14090.1| excinuclease ABC subunit C [Bacteroides sp. 4_3_47FAA] gi|317388274|gb|EFV69126.1| excinuclease ABC subunit C [Bacteroides sp. 3_1_40A] Length = 606 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 172/619 (27%), Positives = 309/619 (49%), Gaps = 48/619 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P+ PG+YQ L+ G ++YVGKA NL++R+ SY + + + ++S+I +IR+ V Sbjct: 18 NLPDSPGIYQYLNSEGTIIYVGKAKNLKRRVSSYFNREHPNGKTRLLVSKIADIRYIVVK 77 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE N+IK+ KPR+N+LL+DDK++P I +++ P ++K R SY+GP Sbjct: 78 TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVSN-EYFPRIFKTRQVIRNGSSYYGP 136 Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + ++ ++ +++ + +R+C +++ + CL + IK C GPC G+ E+ Sbjct: 137 YSHMPSMLAVMDLIKKLYPIRTCKLNLSPENIRAGKFNVCLEYHIKNCKGPCIGQQPHEE 196 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237 YM+ + E K L G + + + M + +E A +++ + + ++ ++ Sbjct: 197 YMKNIGEIKNILKGDTQIVSDLLMEEMQALAAEMKFEEAQKIKEKYDLIENYRSKSEVVN 256 Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 I + +D FS+ +N A I G TF K T ++L + + Sbjct: 257 SIIHNVDVFSIEMEENSAYINYLHITNGCINQAFTFEYKKRLNETKEELLQLGIIEMRER 316 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 K I++ E + V TVP++GEK+ +++ +++N + + Sbjct: 317 YKSTSREIIVPFELDMEM-----------NNVSFTVPQRGEKKHLLDLSVMNVKQYKVDR 365 Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 L E ++K+ ++ + +P IE +DNS+I G AV VV + K Sbjct: 366 LKQAEKLNPEQRSVRLMKEIQEQLHMKKLPNHIECFDNSNIQGSDAVAACVVFKKAKPSK 425 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 +YRK+ + V DD A M+ V+ RR+S+ I+ PD++I Sbjct: 426 KEYRKYIIKT--VTGPDDYASMKEVVRRRYSRAIEEG--------------SPLPDLIIT 469 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ+ + V++ + I I +AK K E + + + P+ + Sbjct: 470 DGGKGQMEVVREVIED-ELHLDIPIAGLAKDRKHRTS-ELLYGFPPLTIGVKQSTPLFHL 527 Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 ++ +++E HRFAIT HR +R K+ S LD I GIG RK LL++F +V I ++S E Sbjct: 528 LENIQNEVHRFAITFHRDKRSKSQVASALDNIKGIGEKRKTALLKTFKSVSRIRQASLEE 587 Query: 589 LASIEGISKKIACKIYNHF 607 +A++ G + A I + Sbjct: 588 IAAVVG--EAAAKNIKENL 604 >gi|33862996|ref|NP_894556.1| excinuclease ABC subunit C [Prochlorococcus marinus str. MIT 9313] gi|81577628|sp|Q7V7L7|UVRC_PROMM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|33634913|emb|CAE20899.1| Excinuclease ABC subunit C (UvrC) [Prochlorococcus marinus str. MIT 9313] Length = 667 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 181/631 (28%), Positives = 312/631 (49%), Gaps = 29/631 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFT 61 +++P PG Y M D+ R+LYVGK+ L+ R++SY S+ +H RI M+ QI I F Sbjct: 38 LKEIPAEPGCYLMRDVEDRLLYVGKSKCLRNRVRSYFRSSSDHGPRIRLMVRQIAEIEFI 97 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIP--ALYKHRDSSTIQG 119 VT +E E+L+LE+N+IK +P FN+LL+DDK +PY+ IT + P + + R Sbjct: 98 VTDSEAESLVLESNLIKNQQPHFNVLLKDDKKYPYLCITWSEEYPRIFITRRRRFRNKND 157 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++GP+ V + +T+ ++R+F LR + + RT CL + I RC G C +I+ + Sbjct: 158 RFYGPYVDVGLLRRTLLLVKRSFPLRQRPRPLHQDRT--CLNYSIGRCPGVCQQKITPQD 215 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + + + G N LK + + M + + + DYESA RD++ L + Sbjct: 216 YHQVLRKVAMVFQGRNQELKVLLEKQMERYSDRMDYESAANIRDQIKGLEQLTEGQKMSL 275 Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D ++ + +A +Q G+ F + T +L + + Y+ Sbjct: 276 PDSSVSRDVLAIASDHRVAAVQLFQMRAGKLVNRLGFTADAV-DQTLGSVLQRVIEEHYS 334 Query: 296 DKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 P +L+ + LL + G +V+I+ P++ K ++IE NA Sbjct: 335 QVDAVEVPPEVLVQYSLPQQELLVDWLSEHRGRRVQISCPQRQAKAELIELVERNAVFEL 394 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 ++ S + ++ +D + L P+RIE YD SHI G AV VV + K Y Sbjct: 395 SRAKSGQQQQELATEDLAQLLELTTQPRRIEGYDISHIQGSDAVASQVVFIDGLPAKQHY 454 Query: 413 RKFNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENLN--------FHPKKQEYSFPS 462 RK+ + + +K+ D M ++ RRF + + ++ + Q Sbjct: 455 RKYKIKSSSIKSGHSDDFMAMAEIMRRRFRRWARVKQEGSNFENLQRCSGSALQTDGLND 514 Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522 WPDVV++DGGKGQLS+A L++L++ + + S+AK + + F + + L + Sbjct: 515 WPDVVMIDGGKGQLSSAMEALRELDLHEDLVVCSLAKKHE-----QIFVPGQSKPLDSDP 569 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMI 581 + ++RLRDEAHRFA++ HR++R + S L +I G+GP R R LL F ++ I Sbjct: 570 DQLGVVLLRRLRDEAHRFAVSYHRQQRGVRMNRSRLTDIPGLGPRRVRDLLAHFQSIDAI 629 Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +S + ++ G+ +A +++ +FH Sbjct: 630 QLASVQQISQAPGLGPALALQVWTYFHPEAD 660 >gi|294777397|ref|ZP_06742848.1| excinuclease ABC, C subunit [Bacteroides vulgatus PC510] gi|294448465|gb|EFG17014.1| excinuclease ABC, C subunit [Bacteroides vulgatus PC510] Length = 606 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 173/619 (27%), Positives = 310/619 (50%), Gaps = 48/619 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P+ PG+YQ L+ G ++YVGKA NL++R+ SY + + + ++S+I +IR+ V Sbjct: 18 NLPDSPGIYQYLNSEGTIIYVGKAKNLKRRVSSYFNREHPNGKTRLLVSKIADIRYIVVK 77 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE N+IK+ KPR+N+LL+DDK++P I +++ P ++K R SY+GP Sbjct: 78 TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVSN-EYFPRIFKTRQVIRNGSSYYGP 136 Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + ++ ++ +++ + +R+C +++ + CL + IK C GPC G+ S E+ Sbjct: 137 YSHMPSMLAVMDLIKKLYPIRTCKLNLSPENIRAGKFNVCLEYHIKNCKGPCIGQQSHEE 196 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237 YM+ + E K L G + + + M + +E A +++ + + ++ ++ Sbjct: 197 YMKNIGEIKNILKGDTQIVSDLLMEEMQALAAEMKFEEAQKIKEKYDLIENYRSKSEVVN 256 Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 I + +D FS+ +N A I G TF K T ++L + + Sbjct: 257 SIIHNVDVFSIEMEENSAYINYLHITNGCINQAFTFEYKKRLNETKEELLQLGIIEMRER 316 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 K I++ E + V TVP++GEK+ +++ +++N + + Sbjct: 317 YKSTSREIIVPFELDMEM-----------NNVSFTVPQRGEKKHLLDLSVMNVKQYKVDR 365 Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 L E ++K+ ++ + +P IE +DNS+I G AV VV + K Sbjct: 366 LKQAEKLNPEQRSVRLMKEIQEQLHMKKLPNHIECFDNSNIQGSDAVAACVVFKKAKPSK 425 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 +YRK+ + V DD A M+ V+ RR+S+ I+ PD++I Sbjct: 426 KEYRKYIIKT--VTGPDDYASMKEVVRRRYSRAIEEG--------------SPLPDLIIT 469 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ+ + V++ + I I +AK K E + + + P+ + Sbjct: 470 DGGKGQMEVVREVIED-ELHLDIPIAGLAKDRKHRTS-ELLYGFPPLTIGVKQSTPLFHL 527 Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 ++ +++E HRFAIT HR +R K+ S LD I GIG RK LL++F +V I ++S E Sbjct: 528 LENIQNEVHRFAITFHRDKRSKSQVASALDNIKGIGEKRKTALLKTFKSVSRIKQASLEE 587 Query: 589 LASIEGISKKIACKIYNHF 607 +A++ G + A I + Sbjct: 588 IAAVVG--EAAAKNIKENL 604 >gi|212692559|ref|ZP_03300687.1| hypothetical protein BACDOR_02056 [Bacteroides dorei DSM 17855] gi|237709124|ref|ZP_04539605.1| excinuclease ABC subunit C [Bacteroides sp. 9_1_42FAA] gi|237724393|ref|ZP_04554874.1| excinuclease ABC subunit C [Bacteroides sp. D4] gi|265752650|ref|ZP_06088219.1| excinuclease ABC, C subunit [Bacteroides sp. 3_1_33FAA] gi|212664844|gb|EEB25416.1| hypothetical protein BACDOR_02056 [Bacteroides dorei DSM 17855] gi|229437262|gb|EEO47339.1| excinuclease ABC subunit C [Bacteroides dorei 5_1_36/D4] gi|229456820|gb|EEO62541.1| excinuclease ABC subunit C [Bacteroides sp. 9_1_42FAA] gi|263235836|gb|EEZ21331.1| excinuclease ABC, C subunit [Bacteroides sp. 3_1_33FAA] Length = 606 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 173/619 (27%), Positives = 309/619 (49%), Gaps = 48/619 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P+ PG+YQ L+ G ++YVGKA NL++R+ SY + + + ++S+I +IR+ V Sbjct: 18 NLPDSPGIYQYLNSEGTIIYVGKAKNLKRRVSSYFNREHPNGKTRLLVSKIADIRYIVVK 77 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE N+IK+ KPR+N+LL+DDK++P I +++ P ++K R SY+GP Sbjct: 78 TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVSN-EYFPRIFKTRKIIRNGSSYYGP 136 Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + ++ ++ +++ + +R+C +++ + CL + IK C GPC G+ S E+ Sbjct: 137 YSHMPSMLAVMDLIKKLYPIRTCKLNLSPENIRAGKFNVCLEYHIKNCKGPCIGQQSHEE 196 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237 YM+ + E K L G + + + M + +E A +++ + + ++ ++ Sbjct: 197 YMKNIGEIKDILKGDTQIVSDLLMEEMQALAAEMKFEEAQKIKEKYDLIENYRSKSEVVN 256 Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 I + +D FS+ +N A I G TF K T ++L + + Sbjct: 257 SIIHNVDVFSIEMEENSAYINYLHITNGCINQAFTFEYKKRLNETKEELLQLGIIEMRER 316 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 K I++ E + V TVP++GEK+ +++ +++N + + Sbjct: 317 YKSTSREIIVPFEVDMEM-----------NNVTFTVPQRGEKKHLLDLSVMNVKQYKVDR 365 Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 L E ++K+ ++ + +P IE +DNS+I G AV VV + K Sbjct: 366 LKQAEKLNPEQRSVRLMKEIQEQLHMKKMPNHIECFDNSNIQGSDAVAACVVFKKAKPSK 425 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 YRK+ + V DD A M+ V+ RR+S+ I+ PD++I Sbjct: 426 KDYRKYIIKT--VTGPDDYASMKEVVRRRYSRAIEEG--------------SPLPDLIIT 469 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ+ + V++ + I I +AK K E + + + P+ + Sbjct: 470 DGGKGQMEVVREVIED-ELHLDIPIAGLAKDRKHRTS-ELLYGFPPLTIGVKQSTPLFHL 527 Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 ++ +++E HRFAIT HR +R K+ S LD I GIG RK LL++F +V I ++S E Sbjct: 528 LENIQNEVHRFAITFHRDKRSKSQVASALDNIKGIGEKRKTALLKTFKSVSRIKQASLEE 587 Query: 589 LASIEGISKKIACKIYNHF 607 +A++ G + A I + Sbjct: 588 IAAVVG--EAAAKNIKENL 604 >gi|150003780|ref|YP_001298524.1| excinuclease ABC subunit C [Bacteroides vulgatus ATCC 8482] gi|149932204|gb|ABR38902.1| excinuclease ABC subunit C [Bacteroides vulgatus ATCC 8482] Length = 606 Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats. Identities = 173/619 (27%), Positives = 310/619 (50%), Gaps = 48/619 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P+ PG+YQ L+ G ++YVGKA NL++R+ SY + + + ++S+I +IR+ V Sbjct: 18 NLPDSPGIYQYLNSEGTIIYVGKAKNLKRRVSSYFNREHPNGKTRLLVSKIADIRYIVVK 77 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE N+IK+ KPR+N+LL+DDK++P I +++ P ++K R SY+GP Sbjct: 78 TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVSN-EYFPRIFKTRQVIRNGSSYYGP 136 Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + ++ ++ +++ + +R+C +++ + CL + IK C GPC G+ S E+ Sbjct: 137 YSHMPSMLAVMDLIKKLYPIRTCKLNLSPENIRAGKFNVCLEYHIKNCKGPCIGQQSHEE 196 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237 YM+ + E K L G + + + M + +E A +++ + + ++ ++ Sbjct: 197 YMKNIGEIKNILKGDTQIVSDLLMEEMQALAAEMKFEEAQKIKEKYDLIENYRSKSEVVN 256 Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 I + +D FS+ +N A I G TF K T ++L + + Sbjct: 257 SIIHNVDVFSIEMEENSAYINYLHITNGCINQAFTFEYKKRLNETKEELLQLGIIEMRER 316 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 K I++ E + V TVP++GEK+ +++ +++N + + Sbjct: 317 YKSTSREIIVPFELDMEM-----------NNVSFTVPQRGEKKHLLDLSVMNVKQYKVDR 365 Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 L E ++K+ ++ + +P IE +DNS+I G AV VV + K Sbjct: 366 LKQAEKLNPEQRSVRLMKEIQEQLHMKKLPNHIECFDNSNIQGSDAVAACVVFKKAKPSK 425 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 +YRK+ + V DD A M+ V+ RR+S+ I+ PD++I Sbjct: 426 KEYRKYIIKT--VTGPDDYASMKEVVRRRYSRAIEEG--------------SPLPDLIIT 469 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ+ + V++ + I I +AK K E + + + P+ + Sbjct: 470 DGGKGQMEVVREVIED-ELHLDIPIAGLAKDRKHRTS-ELLYGFPPLTIGVKQSTPLFHL 527 Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 ++ +++E HRFAIT HR +R K+ S LD I GIG RK LL++F +V I ++S E Sbjct: 528 LENIQNEVHRFAITFHRDKRSKSQVASALDNIKGIGEKRKTALLKTFKSVSRIRQASLEE 587 Query: 589 LASIEGISKKIACKIYNHF 607 +A++ G + A I + Sbjct: 588 IAAVVG--EAAAKNIKENL 604 >gi|265764835|ref|ZP_06093110.1| excinuclease ABC, C subunit [Bacteroides sp. 2_1_16] gi|263254219|gb|EEZ25653.1| excinuclease ABC, C subunit [Bacteroides sp. 2_1_16] Length = 608 Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats. Identities = 171/614 (27%), Positives = 301/614 (49%), Gaps = 38/614 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PG+YQ L+ G ++YVGKA NL++R+ SY + + + ++S+I +IR+ V Sbjct: 19 NLPEKPGIYQYLNAEGTIIYVGKAKNLKRRVYSYFSKEHQSGKTRVLVSKIADIRYIVVN 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E +ALLLE N+IK+ KPR+N+LL+DDK++P I + + P ++K R SY+GP Sbjct: 79 SEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRVFKTRRIIRNGSSYYGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ ++ ++ ++ + LR+C +++ + CL + IK C+GPC G S E+ Sbjct: 138 YSHSPSMHAVLDLIKHLYPLRTCNLNLSPENIRAGKFNVCLEYHIKNCAGPCIGLQSQEE 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y++ + E K+ L G + + + M + +E A +++ A + + ++ ++ + Sbjct: 198 YLKNIAEIKEILKGNTQEISRLLYQRMQDLAAEMKFEEAQKVKEKYALIENYRSKSEVVS 257 Query: 240 NRMDCFSLYHNKNL----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + + ++ + A I G TF K T ++L+ + + Sbjct: 258 SVLHNIDVFSIEEDGEKSAFINYLHITNGAINQAFTFEYKKKLNETKEELLTLGIIEMRE 317 Query: 296 D-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K I++ + E Q G K K+ ++ + A Sbjct: 318 RYKSASREIIVPFDIEIELNDVTFTIPQRGDKKKLLELSLLNVKQYKADRMKQAE----- 372 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 KL+ E ++K+ ++ L +P +IE +DNS+I G AV VV + K+ YRK Sbjct: 373 KLNPEQRSMRLMKEIQQELHLDRLPMQIECFDNSNIQGTDAVAACVVFKKAKPSKSDYRK 432 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 +N+ V DD A M+ V+ RR+ + I+ E PD++I DGGKG Sbjct: 433 YNIKT--VVGADDYASMKEVVRRRYQRAIEEE--------------SPLPDLIITDGGKG 476 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q+ + V+++L ++ I I +AK K E F + + + P+ +++++ Sbjct: 477 QMEVVRQVMEELQLD--IPIAGLAKDRKHRTS-EVLFGFPPQTIGIKQHSPLFRLLEQIQ 533 Query: 535 DEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR +R K S LD I GIG K LL+ F +VK I ++ E +++I Sbjct: 534 DEVHRFAITFHRDKRSKRQVASALDNIKGIGEKTKTALLKEFKSVKRIKEATIEEVSAI- 592 Query: 594 GISKKIACKIYNHF 607 I + A I Sbjct: 593 -IGESKAKIIKEGL 605 >gi|299145225|ref|ZP_07038293.1| excinuclease ABC subunit C [Bacteroides sp. 3_1_23] gi|298515716|gb|EFI39597.1| excinuclease ABC subunit C [Bacteroides sp. 3_1_23] Length = 611 Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats. Identities = 168/623 (26%), Positives = 300/623 (48%), Gaps = 47/623 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PG+YQ L+ G ++YVGKA NL+KR+ SY + + ++S+I +IR+ V Sbjct: 19 NLPEKPGIYQYLNTEGTIIYVGKAKNLKKRVYSYFSKEHEPGKTRVLVSKIADIRYIVVN 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + + P +++ R SY+GP Sbjct: 79 TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRVFRTRKIIRNGSSYYGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + ++ ++ ++ + LR+C +++ + CL + IK C+GPC G S E Sbjct: 138 YSHIPSMYAVLDLIKHLYPLRTCSLNLTPENIRAGKFNVCLEYHIKNCAGPCIGLQSQED 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y++ + E K+ L G + + M + +E A +++ + + ++ ++ + Sbjct: 198 YLKNIDEIKEILKGNTQEISRMLLERMQTLAGEMKFEEAQKVKEKYLLIENYRSKSEVVS 257 Query: 240 NRMDCFSLYHNK----NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + ++ + N A I G TF K + ++L+ + + Sbjct: 258 AVLHNIDVFSIEEDESNSAFINYLHITNGAINQAFTFEYKKKLNESKEELLTLGIIEMRE 317 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ + L I F VP++G+K+K+++ +++N + + Sbjct: 318 RYKSQSREIIVPFELDLELNNIVFT----------VPQRGDKKKLLDLSILNVKQYKADR 367 Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 L E ++K+ ++ L P +IE +DNS+I G AV VV + K Sbjct: 368 LKQAEKLNPEQRSMRLMKEIQQELHLDRPPLQIECFDNSNIQGSDAVAACVVFKKAKPSK 427 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 YRK+N+ V DD A M+ V+ RR+ + I+ PD++I Sbjct: 428 KDYRKYNIKT--VVGPDDYASMKEVVRRRYQRAIEE--------------STPLPDLIIT 471 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ+ + V++ + I I +AK R E F + + + + P+ Sbjct: 472 DGGKGQMEVVREVIED-ELNLTIPIAGLAK-DNRHRTSELLFGFPPQTIGIKQQSPLFRL 529 Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 + +++DE HRFAI+ HR +R K S LD I GIG K LL+ F +VK I +S E Sbjct: 530 LTQIQDEVHRFAISFHRDKRSKRQIASALDNIKGIGEKTKTALLKEFKSVKRIKEASFEE 589 Query: 589 LASIEGISKKIACKIYNHFHKNT 611 +A++ I + A + + Sbjct: 590 IAAV--IGEAKAKTVKEGLNNEQ 610 >gi|187931951|ref|YP_001891936.1| excinuclease ABC subunit C [Francisella tularensis subsp. mediasiatica FSC147] gi|229558032|sp|B2SDE3|UVRC_FRATM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|187712860|gb|ACD31157.1| excinuclease ABC, C subunit [Francisella tularensis subsp. mediasiatica FSC147] Length = 612 Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats. Identities = 185/615 (30%), Positives = 320/615 (52%), Gaps = 30/615 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + GVY+MLD G ++YVGKA NL+ R+ SY + M+ QI I T+T Sbjct: 17 NLTTHSGVYRMLDKHGEIIYVGKAKNLKNRVNSYFSKGAKDSKTLMMVEQIARIEITITP 76 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSYFG 123 ++ EA LLE N+IK+ +P++NIL +DDKS+PY++I+ + K P + +R S +G FG Sbjct: 77 SDYEAYLLENNLIKQHRPKYNILFKDDKSYPYLVIS-RDKFPRVSFYRGKSAYKKGQCFG 135 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ S+ +V+ T+N++Q+ F +R C +S ++ R RPCL +QIKRC PC G +S ++Y E Sbjct: 136 PYVSISSVKNTLNTIQKIFPIRQCENSYYKSRVRPCLQYQIKRCLAPCVGLVSQQQYDEQ 195 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR-- 241 + KKFL+G ++ E+I+ M QA+ +YE A ++RD+L L +Q Sbjct: 196 LAILKKFLAGKFSSVLEEISAKMYQASEDMEYEKAQVYRDQLVVLRKLQQQQIVDIQEDK 255 Query: 242 -MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D +Y + A I G + + I+ FL FY Sbjct: 256 TFDVIGIYMQDSYASIALLQIQNGDVVADRHWSID-AKGQDKTSIMHAFLSHFYLGDEIR 314 Query: 301 ---ENILLSEEAEETSLLEISF--FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ + E + ++ ++ G + + + K ++ A +NA + Sbjct: 315 NIWPKNIILSKVEFADITDLMNSISQKIGQAINWIIAPAADNLKWLKLAEVNARQKLNIY 374 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 S++ +Q L+ + L KRIE +D SH G + + VV ++G + +R++ Sbjct: 375 TSSKSQYQKRLESLKEFLELEKDIKRIECFDISHFQGEATIASCVVYTDDGEDRKSHRRY 434 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ +K+ DD A + + RR S ++ + PDV+I+DGGKGQ Sbjct: 435 NIKG--IKSGDDYAAIHQAVSRRVSSGLEADN---------------LPDVMIIDGGKGQ 477 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLR 534 + A+ V ++ +++++ ++S+ KG +R +G EK + L+ +P ++++R Sbjct: 478 IHQAEAVFREYGIQDKVQLVSLGKGVERISGKEKIYKGFDDTEYTLDEHNPGFLLLRQVR 537 Query: 535 DEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 D AH AI RK+ S ++EI G+G R++ LL+ FG + +SR+S + +A ++ Sbjct: 538 DSAHDHAIKGQRKKVSANRQSSIIEEIEGVGSKRRKALLRYFGGWQELSRASVDEIAKVK 597 Query: 594 GISKKIACKIYNHFH 608 GISKK+A +I+ FH Sbjct: 598 GISKKLAQEIWECFH 612 >gi|134302343|ref|YP_001122312.1| excinuclease ABC subunit C [Francisella tularensis subsp. tularensis WY96-3418] gi|189038057|sp|A4IZ40|UVRC_FRATW RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|134050120|gb|ABO47191.1| excinuclease ABC, C subunit [Francisella tularensis subsp. tularensis WY96-3418] Length = 612 Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats. Identities = 186/615 (30%), Positives = 320/615 (52%), Gaps = 30/615 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + GVY+MLD G ++YVGKA NL+ R+ SY + M+ QI I T+T Sbjct: 17 NLTTHSGVYRMLDKHGEIIYVGKAKNLKNRVNSYFSKGAKDSKTLMMVEQIARIEITITP 76 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSYFG 123 ++ EA LLE N+IK+ +P++NIL +DDKS+PY++I+ + K P + +R S +G FG Sbjct: 77 SDYEAYLLENNLIKQHRPKYNILFKDDKSYPYLVIS-RDKFPRVSFYRGKSAYKKGQCFG 135 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ S+ +V+ T+N++Q+ F +R C +S ++ R RPCL +QIKRC PC G +S ++Y E Sbjct: 136 PYVSISSVKNTLNTIQKIFPIRQCENSYYKSRVRPCLQYQIKRCLAPCVGLVSQQQYDEQ 195 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR-- 241 + KKFL+G ++ E+I+ M QA+ +YE A ++RD+L L +Q Sbjct: 196 LAILKKFLAGKFSSVLEEISAKMYQASEDMEYEKAQVYRDQLVVLRKLQQQQIVDIQEDK 255 Query: 242 -MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D +Y + A I G + + I+ FL FY Sbjct: 256 TFDVIGIYMQDSYASIALLQIQNGDVVADRHWSID-AKGQDKTSIMHAFLSHFYLGDEIR 314 Query: 301 ---ENILLSEEAEETSLLEISF--FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ + E + ++ ++ G + + + K ++ A +NA + Sbjct: 315 NIWPKNIILSKVEFADITDLMNSISQKIGQAINWIIAPAADNLKWLKLAEVNARQKLNIY 374 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 S++ +Q L+ + L KRIE +D SH G + + VV ++G + +R++ Sbjct: 375 TSSKSQYQKRLESLKEFLELEKDIKRIECFDISHFQGEATIASCVVYTDDGEDRKSHRRY 434 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ +K+ DD A + + RR S ++ + PDV+I+DGGKGQ Sbjct: 435 NIKD--IKSGDDYAAIHQAVSRRVSSGLEADN---------------LPDVMIIDGGKGQ 477 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLR 534 + A+ V ++ +++++ I+S+ KG +R +G EK + L+ +P ++++R Sbjct: 478 IHQAEAVFREYGIQDKVQIVSLGKGVERISGKEKIYKGFDDTEYTLDEHNPGFLLLRQVR 537 Query: 535 DEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 D AH AI RK+ S ++EI G+GP R++ L+ FG + +SR+S + +A ++ Sbjct: 538 DSAHDHAIKGQRKKVSANRQSSIIEEIEGVGPKRRKALMMYFGGWQELSRASVDEIAKVK 597 Query: 594 GISKKIACKIYNHFH 608 GISKK+A +I+ FH Sbjct: 598 GISKKLAQEIWECFH 612 >gi|330997304|ref|ZP_08321157.1| excinuclease ABC, C subunit [Paraprevotella xylaniphila YIT 11841] gi|329571099|gb|EGG52806.1| excinuclease ABC, C subunit [Paraprevotella xylaniphila YIT 11841] Length = 609 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 175/618 (28%), Positives = 301/618 (48%), Gaps = 46/618 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P+ PG YQ L+ G ++YVGKA NL++R+ SY ++ + + ++S+I +I++ V Sbjct: 19 NLPDSPGCYQYLNDDGEIIYVGKAKNLKRRVYSYFSKDHQSRKTAMLVSKIRDIKYIVVN 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E +ALLLE N+IKR KP +N+LL+DDK++P I +T+ P ++K R +YFGP Sbjct: 79 SEEDALLLENNLIKRYKPHYNVLLKDDKTYPSICVTN-EYFPRIFKTRHIVRNGSTYFGP 137 Query: 125 FASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + + + ++ RT L +++ + CL + IK C GPC G S E+ Sbjct: 138 YSHIPTLNALLELIKNLYPLRTCHLALTPENIRCGKFNVCLEYHIKNCKGPCIGAQSREE 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237 Y++ + EAK+ L G + + M + +E A + + L ++ ++ Sbjct: 198 YLQSIQEAKEILKGNTAEISRNMLAEMQALAAEMRFEEAQTIKRKYNLLESYRSKSEVVS 257 Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + + +D FS+ ++N A I G TF K + ++L+ + + Sbjct: 258 NVLHNIDVFSIEDDENAAYINYLHVTNGSINQAFTFEYKKRMNESPEELLTLGIAEMRER 317 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 +++ E + V TVP++G+K+K++E +++N + +L Sbjct: 318 YKSRSKEIITPFPIEVEME----------GVTFTVPQRGDKKKLLELSVLNVKQYKLDRL 367 Query: 357 ST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 E ++K+ + L +P RIE +DNS+I G AV VV + K Sbjct: 368 KQAEKLNPEQKSVRLMKEIQQAMHLEKLPMRIECFDNSNISGMDAVAACVVFKKCKPSKQ 427 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YRK+N+ V DD A M+ V+ RR+S+ + + L PD++I D Sbjct: 428 DYRKYNIKT--VVGPDDYASMKEVVRRRYSRAMAEQGEL--------------PDLIITD 471 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GG+GQ+ + V++ + RI I +AK + E F + + P+ + Sbjct: 472 GGRGQMEVVREVVEDE-LGLRIPIAGLAKDDRHRT-NELLFGFPPIVIGMKTDSPVFRLM 529 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 +++DE HRFAIT HR +R K S LD I GIG K LL+ F +VK I +S + L Sbjct: 530 TQIQDEVHRFAITFHRDKRSKHQTVSALDTIKGIGEKTKTQLLKRFKSVKRIREASFDEL 589 Query: 590 ASIEGISKKIACKIYNHF 607 A+ I + A I + Sbjct: 590 AA--EIGQAKAKIIQENL 605 >gi|256545267|ref|ZP_05472632.1| UvrABC system, C protein [Anaerococcus vaginalis ATCC 51170] gi|256399094|gb|EEU12706.1| UvrABC system, C protein [Anaerococcus vaginalis ATCC 51170] Length = 615 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 200/621 (32%), Positives = 318/621 (51%), Gaps = 26/621 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 +++P+ PGVY M + ++YVGKA NL+KR+ Y ++ N ++ M+S IN+ + Sbjct: 8 KLKELPDLPGVYIMRNSQDEIIYVGKAINLKKRVSQYFDNNKNKGRKVLSMVSHINHFEY 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 + EVEAL+LE+N+IK+ +P++NI+LRDDK +PYI IT+ K P + K R+ +G Sbjct: 68 IIVENEVEALVLESNLIKKNRPKYNIVLRDDKQYPYIKITN-EKFPRIQKVRNVKKDKGY 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178 Y+GP+ AV I + +R+C + + + RPCL + I RC PC G+ + Sbjct: 127 YYGPYPDAYAVNDVIELFHILYPIRTCNLNFDKGQQLDRPCLNYYIDRCKAPCVGKGDEK 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +YME + + K FL + + + MN+A+ D+E+A +RD ALS I Sbjct: 187 EYMENITKIKNFLENKSDYIPNLVINKMNKASEILDFENAAKYRDYHRALSTISQKQKVT 246 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + +D ++ +Q F G+ F +K D + I+S F++QFY Sbjct: 247 TTNGDDIDIIAMSKGIFYVTMQVFFMRDGKIVDREHFIIKDDYREKDEDIISSFMKQFYL 306 Query: 296 D-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 + P+ IL+ + + L + K+ G KVKI PK G+K+++++ A NA + Sbjct: 307 NLMYIPKEILVHKLPSDLDALNLFIEKKKGNKVKINCPKLGKKKELVDMAFRNASDMMRK 366 Query: 355 K----LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 E L + L RIE YD S+ G +VG MVV + Sbjct: 367 YEKRLEEKERKKHSGLNGLKEILNLK-SINRIEAYDISNTSGVQSVGSMVVFQNGIAERK 425 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 +YRKF + ++ DD + VL RRF + K +N N + F PD++++D Sbjct: 426 EYRKFKIKT--IEGPDDYHSLEEVLTRRFERAKKEIKNNNTYT-----GFGKLPDLILMD 478 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ+ +A+ VLK LN I + + K K + + + E + + RDP+ I Sbjct: 479 GGKGQVKSAKKVLKDLNFS--IEVAGLVKDDKHTTRA---IIYENEEIQIKKRDPVYKLI 533 Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 +++EAHRFAI HRK + S LD INGIG +K LL+ F +VK I ++S E L Sbjct: 534 YEIQEEAHRFAINYHRKLMTQTMKKSELDNINGIGKRKKENLLKHFKSVKNIKKASLEEL 593 Query: 590 ASIEGISKKIACKIYNHFHKN 610 ++ I + A +I +F N Sbjct: 594 MEVDLIGESQALEIIKYFKLN 614 >gi|313158439|gb|EFR57834.1| excinuclease ABC, C subunit [Alistipes sp. HGB5] Length = 606 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 181/622 (29%), Positives = 299/622 (48%), Gaps = 49/622 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVTC 64 +P PGVYQ +D +G ++YVGKA +L+KR+ SY S H+ ++ ++ QI IR V Sbjct: 16 LPLSPGVYQFVDRSGTIIYVGKAKSLRKRVSSYFVQSKEHSAKVRVLVRQIAEIRHIVVS 75 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E +ALLLE ++IK L+PR+NILL+DDK++P+I++ +H P + R + YFGP Sbjct: 76 SETDALLLENSLIKTLQPRYNILLKDDKTYPWIVVRREH-FPRVQSTRQLTRDGSQYFGP 134 Query: 125 FASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++SV + ++ RT L + + + R CL + + C GPC GE S + Sbjct: 135 YSSVMMQHSVLEFVREVVPLRTCKLNLAPEQIAKGRYSVCLQYHLGNCKGPCVGEQSEAE 194 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237 Y + V L G ++ + M+ A +E A ++ RL AL + + + Sbjct: 195 YAKLVDMVVAVLKGDLRPVRSYLESEMSHAAAGLKFELAQRYKQRLDALDNYSSRSVIVS 254 Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ--FY 294 +D FSL + ++A G G T L T +L+ ++ + Sbjct: 255 AKIVDVDVFSLLPDDDVAYCNFVRIRHGSIVGVYTVKLSTGVGGDERDMLTLAIQHIVEH 314 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 + +++ T L + V TVPK+GEK +++E + +A + Sbjct: 315 IAGTLAKEVVVPFLPSTTLLFD---------GVTFTVPKRGEKLELLEFSQKSARIYRAE 365 Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 +L E + +L K+ L P+ IE +DNS++ G V VV + Sbjct: 366 QLKNLEIKNPERYTERLLNALQKELRLDRQPRHIECFDNSNLQGAHPVASCVVFRDGKPA 425 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 + +YR FN+ V+ DD A MR V+ RR+S+L + L PD++I Sbjct: 426 RKEYRHFNIKT--VEGPDDYASMREVVFRRYSRLQEEGAEL--------------PDLII 469 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 DGGKGQ+ VL+ L ++ I + +AK + E + + P+ + Sbjct: 470 ADGGKGQMGIIHEVLEYLGLD--IPVAGLAKNDRHRTS-ELLCGYPPVLVGIRPTSPLFH 526 Query: 529 FIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 F+ +++E HRFA++ HR++R KA +S L++I GIG R LLQ F +V + + E Sbjct: 527 FLAHIQEEVHRFAVSFHRQKRSKAFIHSELEQIEGIGDKTIRTLLQHFRSVAKVKAAPAE 586 Query: 588 TLASIEGISKKIACKIYNHFHK 609 L+++ G A KI F K Sbjct: 587 ELSALVG--PAKAKKIRAFFEK 606 >gi|124023198|ref|YP_001017505.1| excinuclease ABC subunit C [Prochlorococcus marinus str. MIT 9303] gi|123963484|gb|ABM78240.1| Excinuclease ABC subunit C (UvrC) [Prochlorococcus marinus str. MIT 9303] Length = 667 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 183/633 (28%), Positives = 310/633 (48%), Gaps = 29/633 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFT 61 +++P PG Y M D R+LYVGK+ L+ R++SY S+ +H RI M+ QI I F Sbjct: 38 LKEIPAEPGCYLMRDGEDRLLYVGKSKCLRNRVRSYFRSSSDHGPRIRLMVRQIVEIEFI 97 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIP--ALYKHRDSSTIQG 119 VT +E E+L+LE+N+IK +P FN+LL+DDK +PYI IT + P + + R Sbjct: 98 VTDSEAESLVLESNLIKNQQPHFNVLLKDDKKYPYICITWSEEYPRIFITRRRRFRNKND 157 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++GP+ V + +T+ ++R+F LR + + RT CL + I RC G C +I+ + Sbjct: 158 RFYGPYVDVGLLRRTLFLVKRSFPLRQRPRPLHQDRT--CLNYSIGRCPGVCQQKITPKD 215 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + + + G N LK + R M + + + DYESA RD++ L + Sbjct: 216 YHQVLRKVAMVFQGRNQELKVLLERQMERYSDRLDYESAANIRDQIKGLEQLTEEQKMSL 275 Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D ++ + +A +Q G+ F + T +L + + Y+ Sbjct: 276 PDSSVSRDVLAIASDHRVAAVQLFQMRAGKLVNRLGFTADAV-DQTLGSVLQRVIEEHYS 334 Query: 296 DKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 P +L+ + LL +Q G +V+I+ P++ K ++IE NA Sbjct: 335 QVDAVEVPPEVLVQYSLPQQELLIDWLSEQRGRRVQISCPQRQAKAELIELVERNAVFEL 394 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 ++ S + ++ +D + L +P+RIE YD SHI G AV VV + K Y Sbjct: 395 SRAKSGQQQQELATEDLAQLLELTTLPRRIEGYDISHIQGSDAVASQVVFIDGLPAKQHY 454 Query: 413 RKFNLHPNDVKTQD--DCAMMRMVLERRFSQLIK--------NEENLNFHPKKQEYSFPS 462 RK+ + + +K+ D M ++ RRF + + + Q Sbjct: 455 RKYKIKSSSIKSGHSDDFMAMAEIMRRRFRRWARVKQEGSDFEKLQRCSGSTLQTDGLND 514 Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522 WPDVV++DGGKGQLS+ L++L++ + + S+AK + + F + + L + Sbjct: 515 WPDVVMIDGGKGQLSSVMEALRELDLHEDLVVCSLAKKHE-----QIFVPGQSKPLDSDP 569 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMI 581 + ++RLRDEAHRFA++ HR++R + S L +I G+GP R R LL F ++ I Sbjct: 570 DQLGVVLLRRLRDEAHRFAVSYHRQQRGVRMNRSRLTDIPGLGPRRVRDLLAHFQSIDAI 629 Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +S + ++ G+ +A +++ +FH Sbjct: 630 QLASVQQISQAPGLGPALAFQVWTYFHPEADKA 662 >gi|225010211|ref|ZP_03700683.1| excinuclease ABC, C subunit [Flavobacteria bacterium MS024-3C] gi|225005690|gb|EEG43640.1| excinuclease ABC, C subunit [Flavobacteria bacterium MS024-3C] Length = 595 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 187/624 (29%), Positives = 295/624 (47%), Gaps = 52/624 (8%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + +PE PGVYQ D + ++LY+GKA NL+KR+ SY + + ++ +I I+ Sbjct: 8 IQLSVLPETPGVYQFYDSSDKILYIGKAKNLKKRVSSYFTLKHEIAKTRLLVKKIVLIKH 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE +ALLLE N+IK+ +PR+NILL+DDK+FP+I I K + P ++ R Sbjct: 68 IVVPTESDALLLENNLIKKYQPRYNILLKDDKTFPWICI-KKERFPRVFLTRQLIKDGSE 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175 YFGP+ + V+ + ++ + LR+C + + R + CL + + C PC Sbjct: 127 YFGPYTNKRMVKVLLELIKGLYPLRTCNYDLSFEKIQEGRYKSCLEYHLGNCHAPCENLQ 186 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 S Y + + + L G + M++ +E +E A +++LA L+ Q+ + Sbjct: 187 SEASYAKDIEAIRHILKGNLAAAMKHFKIEMDRYAAEEAFEMAHKVKEKLAVLAGYQSKS 246 Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 N +D F++ ++ A + G + T +K E T+AQIL + Sbjct: 247 TIVNPKINNVDVFTVISDQTHAYVNFLELSHGAIIRSHTLEIKKQLEETDAQILELAIVS 306 Query: 293 FYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 K + +++ + +K T+P G+K+K++ + NA Sbjct: 307 LRERFKSISKEVIIPFKVLMPE------------GIKATIPVLGDKQKLLALSERNARFY 354 Query: 352 HTQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405 KLS E + IL + L +P IE +DNS+I G + V VV Sbjct: 355 RQDKLSQMRIVDPERHSKRILAQIKQDLRLSSLPVHIECFDNSNIQGSNPVAACVVFTNA 414 Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465 K YR F++ V+ DD A M V+ RR+ +L + S P Sbjct: 415 KPNKKMYRHFHIKT--VEGPDDFASMEEVVYRRYKRLKEEG--------------SSLPQ 458 Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525 ++++DGGKGQLSAA L +L + +I I+ IAK + E +F + L L+ + Sbjct: 459 LIVIDGGKGQLSAALKALDQLGLRGKIAIVGIAKRLE-----EIYFPEDPIPLYLDKKSE 513 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 L IQ+LR+EAHRF IT HR R K A S LD I GIG LL+ F TV I + Sbjct: 514 SLKVIQQLRNEAHRFGITFHRNLRSKGAIVSELDGIKGIGEKTATQLLRHFKTVAKIKEA 573 Query: 585 SPETLASIEGISKKIACKIYNHFH 608 + + L I + A +Y HFH Sbjct: 574 NLDAL--ITQVGPAKASILYEHFH 595 >gi|254374110|ref|ZP_04989592.1| DNA excision repair enzyme [Francisella novicida GA99-3548] gi|151571830|gb|EDN37484.1| DNA excision repair enzyme [Francisella novicida GA99-3548] Length = 612 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 185/615 (30%), Positives = 318/615 (51%), Gaps = 30/615 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + GVY+MLD G ++YVGKA NL+ R+ SY + M+ QI I T+T Sbjct: 17 NLTTHSGVYRMLDKHGEIIYVGKAKNLKNRVNSYFSKGAKDSKTLMMVEQIARIEITITP 76 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSYFG 123 ++ EA LLE N+IK+ +P++NIL +DDKS+PY++I+ + K P + +R S +G FG Sbjct: 77 SDYEAYLLENNLIKQHRPKYNILFKDDKSYPYLVIS-RDKFPRVSFYRGKSAYKKGQCFG 135 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ S+ +V+ T+N++Q+ F +R C +S ++ R RPCL +QIKRC PC G +S ++Y E Sbjct: 136 PYVSISSVKNTLNTIQKIFPIRQCENSYYKSRVRPCLQYQIKRCLAPCVGLVSQQQYDEQ 195 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR-- 241 + KKFL+G ++ E+I+ M QA+ +YE A ++RD+L L +Q Sbjct: 196 LAILKKFLAGKFSSVLEEISAKMYQASEDMEYEKAQVYRDQLVVLRKLQQQQIVDIQEDK 255 Query: 242 -MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D +Y + A I G + + I+ FL FY Sbjct: 256 TFDVIGIYMQDSYASIALLQIQNGDVVADRHWSID-AKGQDKTSIMHAFLSHFYLGDEIR 314 Query: 301 ---ENILLSEEAEETSLLEISF--FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ + E + ++ ++ G + + + K ++ A +NA + Sbjct: 315 NIWPKNIILSKVEFADITDLMNSISQKIGQAINWIIAPAADNLKWLKLAEVNARQKLNIY 374 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 S++ +Q L+ + L KRIE +D SH G + + VV + G + +R++ Sbjct: 375 TSSKSQYQKRLESLKEFLELEKDIKRIECFDISHFQGEATIASCVVYTDEGEDRKSHRRY 434 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ +K DD A + + RR S ++ + PDV+I+DGGKGQ Sbjct: 435 NIKD--IKAGDDYAAIYQAVSRRVSSGLEADN---------------LPDVMIIDGGKGQ 477 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLR 534 + A+ V ++ +++++ ++S+ KG +R +G EK + L+ +P ++++R Sbjct: 478 IHQAEAVFREFGIQHKVQLVSLGKGVERISGKEKIYKGFDDTEYTLDEHNPGFLLLRQVR 537 Query: 535 DEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 D AH AI RK+ S ++EI G+GP R++ L+ FG + +SR+S + +A ++ Sbjct: 538 DSAHDHAIKGQRKKVSANRQSSIIEEIEGVGPKRRKALIMYFGGWQELSRASVDEIAKVK 597 Query: 594 GISKKIACKIYNHFH 608 GISKK+A +I+ FH Sbjct: 598 GISKKLAQEIWECFH 612 >gi|125624511|ref|YP_001032994.1| excinuclease ABC subunit C [Lactococcus lactis subsp. cremoris MG1363] gi|189038062|sp|A2RLW6|UVRC_LACLM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|124493319|emb|CAL98290.1| excinuclease ABC, C subunit [Lactococcus lactis subsp. cremoris MG1363] Length = 669 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 179/673 (26%), Positives = 301/673 (44%), Gaps = 88/673 (13%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D G V+YVGKA NL+ R++SY H +++T + ++S+I ++ + Sbjct: 8 KLELLPDSPGCYLHKDKNGTVIYVGKAKNLKNRVRSYFHGSHNT-KTELLVSEIEDLEWI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V + +E+L+LE N+I+R KP++NI+L+DDK +P++ IT+ K P L R +Y Sbjct: 67 VVGSNIESLVLEINLIQRYKPKYNIMLKDDKYYPFLKITN-EKYPRLLVVRKVQKDGATY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C H + C F I +C P + + Y Sbjct: 126 FGPYPDVKAANEVKRLLDRIFPFRKCG----LHEKKVCFYFHIHQCLCPVVNHVDPQVYK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 + E K+FL+G + + +++ M A+ ++E A +RD + A+ ++ + Sbjct: 182 DMTQEVKEFLTGSDKKIVKELEGKMISASDNMEFEQAAEYRDVIKAIGTLRTKQRVMNQD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ +++ + + Sbjct: 242 LKDRDVFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDAEEDFLTYIGQFYQDNNHM 301 Query: 299 CPENILLSEEAE------------------------------------------------ 310 P I + ++ + Sbjct: 302 MPREIFIPQDIDKDSVEAVVAASQEGNLLTKAQAKAVDAKVFTAKTLKFSDQKDVEQSIV 361 Query: 311 --ETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLSTEISHQM 364 + L K +I P +GEK++++ A NA + Sbjct: 362 KLDKELSSEKRLSSLLAKTQIIQPSRGEKKQLVNMATKNAQTQLQLKFDVAERDILKTTK 421 Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424 +++ K +P RIE +DNS+IMG S V MVV + K YRK+ + V Sbjct: 422 AVENLGKILGIPKPV-RIESFDNSNIMGTSPVSAMVVFIDGKPSKKDYRKYKIKT--VVG 478 Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484 DD A MR V+ RR+S+ +K E L PD++ +DGG GQ++ A+ VL+ Sbjct: 479 ADDYASMREVMTRRYSRALKEETAL--------------PDLIAMDGGAGQVNIAKEVLR 524 Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544 +L + I + + K K E F E + L+ + + + R++DE HRFAIT Sbjct: 525 ELGLA--IPVAGMQKNDKHQTS-ELLFGDPLEVVPLSRQSQEFFLLTRIQDEVHRFAITF 581 Query: 545 HRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 HR+ R K +S LD I G+GP RK+ LL +F +K I ++ + +A G+ ++A ++ Sbjct: 582 HRQLRGKNTFSSKLDGIVGLGPKRKQKLLTTFKNLKAIEEATVQEVAEA-GVPYEVAERV 640 Query: 604 YNHF---HKNTSH 613 N HK+ + Sbjct: 641 KNTLSAPHKSDEN 653 >gi|319937287|ref|ZP_08011694.1| excinuclease ABC subunit C [Coprobacillus sp. 29_1] gi|319807653|gb|EFW04246.1| excinuclease ABC subunit C [Coprobacillus sp. 29_1] Length = 586 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 173/613 (28%), Positives = 296/613 (48%), Gaps = 46/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M + G V+YVGKA L+ R+ SY H ++ T ++S+I + + VT + Sbjct: 12 LPPSPGCYLMKNKEGTVIYVGKAKKLKNRVHSYFVGA-HDYKTTKLVSEIVDFEYIVTGS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLE N+IK P++NI+ D+ +PYI +T++ P L RD+ + +FGPF Sbjct: 71 EKEALLLEINLIKDYSPQYNIMFMDNTYYPYIQMTNEE-HPRLKIVRDAKEKKAKHFGPF 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 A +T L R + LR C +PCL + + +C PC ++ E+Y++ Sbjct: 130 PDATAARETYKLLDRLYPLRKCNHIP----KKPCLYYSLNQCLAPCVRDVDQEEYVQIKK 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E K L+G + ++ M +A+ + ++E A +RD + + H+ +N Sbjct: 186 EIVKLLNGDTKDKIHELTEKMTKASEELNFEQAKEYRDLITYIQHVTAKQHVQFNDNIDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D Y + IQ F G+ + + L F+ FY + P+ Sbjct: 246 DILGYYVDHGYLSIQLFFMRHGKLLSRDLNLV--PIGVNVQEDLQQFIVSFYQNNTLPKE 303 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 +LL ++ ++ L EI K P++G K +++ A+ NA S Sbjct: 304 VLLPQDVDDEVLKEILDCKILK-------PQKGNKYSLVQMAIDNARESLEKKFELIQKN 356 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E + +K + + IE++DNS+I G AV MV + K YRK+ + Sbjct: 357 EAATIGAMKQLGELLQIETP-HVIELFDNSNIQGAYAVAGMVCFKDGIPSKKDYRKYKIK 415 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD A MR V+ RR+ +++ + PD++++DGG GQ+ Sbjct: 416 T--VEGPDDYASMREVIYRRYYRVLMEG--------------LTPPDMILVDGGLGQIHV 459 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ V+ LN+ I + +AK K S M + G + ++ + + + + R++DE H Sbjct: 460 AKEVVDSLNM--NIKVCGLAKDDKHSTAM--LLDENGTPIPIHPKSELFFLLTRMQDEVH 515 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 R+AI+ H+ R K+ + S LD+I GIGP RK+ LL F +VK + +S E L + + Sbjct: 516 RYAISFHKNVRSKSLFASVLDDIEGIGPKRKKQLLNHFKSVKRMKEASLEELQEL--LPD 573 Query: 598 KIACKIYNHFHKN 610 K+A +++ ++ Sbjct: 574 KVAEELFQSLQED 586 >gi|332291738|ref|YP_004430347.1| excinuclease ABC, C subunit [Krokinobacter diaphorus 4H-3-7-5] gi|332169824|gb|AEE19079.1| excinuclease ABC, C subunit [Krokinobacter diaphorus 4H-3-7-5] Length = 617 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 181/624 (29%), Positives = 299/624 (47%), Gaps = 52/624 (8%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + +P PG+YQ D G++LYVGKA NL+KR+ SY + RI M+ +I+ ++ Sbjct: 27 LQLKTLPTSPGIYQYYDKNGKLLYVGKAKNLKKRVLSYFNKTLDNGRIRTMVKKIHEMKH 86 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE +ALLLE ++IK +PR+N+LL+DDKS+P+I I + P ++ R Sbjct: 87 IVVETETDALLLENSLIKEYQPRYNVLLKDDKSYPWICI-KNERFPRIFPTRRLIKDGSE 145 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175 Y+GP+ S+ V ++ ++ + LR+C D + + + CL + + C GPC + Sbjct: 146 YYGPYTSMKTVRTLLDLIKSLYKLRTCNYDLSKDKIDAGKYKVCLEYHLGNCEGPCEDKQ 205 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 S ++Y E + ++ + G + + M + ++E A +++L L Q+ + Sbjct: 206 SEKEYHEHIEHIRQIVKGDFKDSLARFREKMKEHAAAMEFEDAQRIKEKLDILEGYQSKS 265 Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 + +D FS+ ++ + G + T LK + T+ ++L + + Sbjct: 266 TVVNPKISDVDVFSIISDEGYGYVNFLQISHGAIIKSHTLELKKQLDETDKELLELGIIE 325 Query: 293 FYTDKPC-PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 + I + E E + KITVPK G+K++I+E + NA Sbjct: 326 IQQRFDHNSKEIYVPFEVELGD------------QYKITVPKLGDKKRILELSERNAKYY 373 Query: 352 HTQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405 ++ + I+ L P+ IE +DNS+I G + V VV Sbjct: 374 RMERFKQTKIVDPDRHTNRIMAQMKADLRLTEEPRHIECFDNSNIQGSNPVAACVVFKNG 433 Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465 K+ YRKFN+ V+ DD A M V+ RR+ +L+ ++ L P Sbjct: 434 KASKSDYRKFNIKT--VEGPDDFASMEEVVYRRYKRLLAEDQPL--------------PQ 477 Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525 ++I+DGGKGQLS+ L L + +I II IAK + E F+ L L+ + Sbjct: 478 LIIVDGGKGQLSSGVKALDDLGLRGKIAIIGIAKRLE-----ELFYPGDSIPLYLDKKSE 532 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 L IQ+LR+EAHRF IT HR +R A + LD I GIG LL+ + +V + + Sbjct: 533 TLKIIQQLRNEAHRFGITFHRNQRSNAALGTELDAIRGIGEKTIVDLLKHYRSVSKVKVA 592 Query: 585 SPETLASIEGISKKIACKIYNHFH 608 S ++L + I A IYNH+H Sbjct: 593 SKKSLTEV--IGPSKAAIIYNHYH 614 >gi|311748684|ref|ZP_07722469.1| excinuclease ABC subunit C [Algoriphagus sp. PR1] gi|126577217|gb|EAZ81465.1| excinuclease ABC subunit C [Algoriphagus sp. PR1] Length = 601 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 180/610 (29%), Positives = 302/610 (49%), Gaps = 46/610 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P+ PGVY+ + A ++YVGKA NL+KR+ SY + + + M+ +I I T+ Sbjct: 13 TLPDQPGVYRYFNAANELIYVGKAKNLKKRVSSYFNKISGLNLKTKRMVREIQRIEITMV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E++ALLLE N+IK+ +P++NILLRDDK++PY+L+T K P +++ R +G+YFG Sbjct: 73 NSELDALLLENNLIKKTQPKYNILLRDDKTYPYLLLT-KENFPRIFQTRKYIPKRGTYFG 131 Query: 124 PFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 PFASV A+ ++ ++ F +R+C + + + CL + I C GPC G Sbjct: 132 PFASVKAMNNVLDLIRELFTIRTCKLDLSPYKIAEEKYKVCLEYHIGNCQGPCVGLQKES 191 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 Y++ + +AK L G K + M + ++E A +D+L L Q + Sbjct: 192 NYLKDIEQAKHILKGNLGVAKSHFKQEMQKMAENLEFEKAQKLKDKLILLEKYQAKSLVA 251 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 +D ++ ++ A + G + LK + T+ Q+L L + Sbjct: 252 SPNIANLDVCTIVTDEKNAYVNYLRIKNGAMNVSKNVELKKKLDETDEQLLLTALIRLQD 311 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRS 351 + +L ++ + +T+PK G+K+K+IE +L NA Sbjct: 312 QFQS----------DAKEVLINIDIEEPIEGLNLTLPKIGDKKKLIELSLKNALYYKKEK 361 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 K E +++ + +LP IP IE +DNS+I G + V MV + Sbjct: 362 ALLKGLNEDKKDRVIRQLQQDLSLPDIPDHIECFDNSNIQGTNPVASMVCFLNGKPAVKE 421 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YR F++ V +D A M+ V+ RR+ +L++ ++ L P ++++DG Sbjct: 422 YRHFHIKT--VVGANDFASMKEVVGRRYKRLLEEDKPL--------------PKLIVIDG 465 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GKGQLS++ LK+L + ++ II IAK + E +F + ++ + L +Q Sbjct: 466 GKGQLSSSVEALKELGIYGKMPIIGIAKRLE-----EIYFPGDSYPIHIDKKSESLRLLQ 520 Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 R+RDEAHRFAIT HR R K A+ + L +I GIG LL F ++K I ++ L Sbjct: 521 RIRDEAHRFAITFHRDVRSKNAFGTQLTDIEGIGKNTAEKLLSHFKSIKKIKEANETELI 580 Query: 591 SIEGISKKIA 600 + G S+ A Sbjct: 581 EVIGSSRTKA 590 >gi|254372649|ref|ZP_04988138.1| UvrABC system protein C [Francisella tularensis subsp. novicida GA99-3549] gi|151570376|gb|EDN36030.1| UvrABC system protein C [Francisella novicida GA99-3549] Length = 612 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 185/615 (30%), Positives = 317/615 (51%), Gaps = 30/615 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + GVY+MLD G ++YVGKA NL+ R+ SY + M+ QI I T+T Sbjct: 17 NLTTHSGVYRMLDKHGEIIYVGKAKNLKNRVNSYFSKGAKDSKTLMMVEQIARIEITITP 76 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSYFG 123 ++ EA LLE N+IK+ +P++NIL +DDKS+PY++I+ + K P + +R S +G FG Sbjct: 77 SDYEAYLLENNLIKQHRPKYNILFKDDKSYPYLVIS-RDKFPRVSFYRGKSAYKKGQCFG 135 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ S+ +V+ T+N++Q+ F +R C +S ++ R RPCL +QIKRC PC G +S ++Y E Sbjct: 136 PYVSISSVKNTLNTIQKIFPIRQCENSYYKSRVRPCLQYQIKRCLAPCVGLVSQQQYDEQ 195 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR-- 241 + KKFL+G + E+I+ M QA+ +YE A ++RD+L L +Q Sbjct: 196 LAILKKFLAGKFSTVLEEISAKMYQASEDMEYEKAQVYRDQLVVLRKLQQQQIVDIQEDK 255 Query: 242 -MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D +Y + A I G + + I+ FL FY Sbjct: 256 TFDVIGIYMQDSYASIALLQIQNGDVVADRHWSID-AKGQDKTSIMHAFLSHFYLGDEIR 314 Query: 301 ---ENILLSEEAEETSLLEISF--FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ + E + ++ ++ G + + + K ++ A +NA + Sbjct: 315 NIWPKNIILSKVEFADITDLMNSISQKIGQAINWIIAPAADNLKWLKLAEVNARQKLNIY 374 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 S++ +Q L+ + L KRIE +D SH G + + VV + G + +R++ Sbjct: 375 TSSKSQYQKRLESLKEFLELEKDIKRIECFDISHFQGEATIASCVVYTDEGEDRKSHRRY 434 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ +K DD A + + RR S ++ + PDV+I+DGGKGQ Sbjct: 435 NIKD--IKAGDDYAAIYQAVSRRVSSGLEADN---------------LPDVMIIDGGKGQ 477 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLR 534 + A+ V ++ +++++ ++S+ KG +R +G EK + L+ +P ++++R Sbjct: 478 IHQAEAVFREYGIQDKVQLVSLGKGIERISGKEKIYKGFDDTEYTLDEHNPGFLLLRQVR 537 Query: 535 DEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 D AH AI RK+ S ++EI G+GP R++ L+ FG + +SR+S + +A ++ Sbjct: 538 DSAHDHAIKGQRKKVSANRQSSIIEEIEGVGPKRRKALIMYFGGWQELSRASVDEIAKVK 597 Query: 594 GISKKIACKIYNHFH 608 GISKK+A +I+ FH Sbjct: 598 GISKKLAQEIWECFH 612 >gi|53711389|ref|YP_097381.1| excinuclease ABC subunit C [Bacteroides fragilis YCH46] gi|60679707|ref|YP_209851.1| excinuclease ABC subunit C [Bacteroides fragilis NCTC 9343] gi|253564503|ref|ZP_04841960.1| excinuclease ABC subunit C [Bacteroides sp. 3_2_5] gi|81317219|sp|Q5LIY7|UVRC_BACFN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|81383989|sp|Q650H7|UVRC_BACFR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|52214254|dbj|BAD46847.1| excinuclease ABC subunit C [Bacteroides fragilis YCH46] gi|60491141|emb|CAH05889.1| putative excinuclease UvrC protein [Bacteroides fragilis NCTC 9343] gi|251948279|gb|EES88561.1| excinuclease ABC subunit C [Bacteroides sp. 3_2_5] gi|301161171|emb|CBW20709.1| putative excinuclease UvrC protein [Bacteroides fragilis 638R] Length = 608 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 171/614 (27%), Positives = 300/614 (48%), Gaps = 38/614 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PG+YQ L+ G ++YVGKA NL++R+ SY + + ++S+I +IR+ V Sbjct: 19 NLPEKPGIYQYLNAEGTIIYVGKAKNLKRRVYSYFSKEHQPGKTRVLVSKIADIRYIVVN 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E +ALLLE N+IK+ KPR+N+LL+DDK++P I + + P ++K R SY+GP Sbjct: 79 SEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRVFKTRRIIRNGSSYYGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ ++ ++ ++ + LR+C +++ + CL + IK C+GPC G S E+ Sbjct: 138 YSHSPSMHAVLDLIKHLYPLRTCNLNLSPENIRAGKFNVCLEYHIKNCAGPCIGLQSQEE 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y++ + E K+ L G + + + M + +E A +++ A + + ++ ++ + Sbjct: 198 YLKNIAEIKEILKGNTQEISRLLYQRMQDLAAEMKFEEAQKVKEKYALIENYRSKSEVVS 257 Query: 240 NRMDCFSLYHNKNL----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + + ++ + A I G TF K T ++L+ + + Sbjct: 258 SVLHNIDVFSIEEDGEKSAFINYLHITNGAINQAFTFEYKKKLNETKEELLTLGIIEMRE 317 Query: 296 D-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K I++ + E Q G K K+ ++ + A Sbjct: 318 RYKSASREIIVPFDIEIELNDVTFTIPQRGDKKKLLELSLLNVKQYKADRMKQAE----- 372 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 KL+ E ++K+ ++ L +P +IE +DNS+I G AV VV + K+ YRK Sbjct: 373 KLNPEQRSMRLMKEIQQELHLDRLPMQIECFDNSNIQGTDAVAACVVFKKAKPSKSDYRK 432 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 +N+ V DD A M+ V+ RR+ + I+ E PD++I DGGKG Sbjct: 433 YNIKT--VVGADDYASMKEVVRRRYQRAIEEE--------------SPLPDLIITDGGKG 476 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q+ + V+++L ++ I I +AK K E F + + + P+ +++++ Sbjct: 477 QMEVVRQVMEELQLD--IPIAGLAKDRKHRTS-EVLFGFPPQTIGIKQHSPLFRLLEQIQ 533 Query: 535 DEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR +R K S LD I GIG K LL+ F +VK I ++ E +++I Sbjct: 534 DEVHRFAITFHRDKRSKRQVASALDNIKGIGEKTKTALLKEFKSVKRIKEATIEEVSAI- 592 Query: 594 GISKKIACKIYNHF 607 I + A I Sbjct: 593 -IGESKAKIIKEGL 605 >gi|70726816|ref|YP_253730.1| excinuclease ABC subunit C [Staphylococcus haemolyticus JCSC1435] gi|92058696|sp|Q4L5F1|UVRC_STAHJ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|68447540|dbj|BAE05124.1| excinuclease ABC subunit C [Staphylococcus haemolyticus JCSC1435] Length = 596 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 174/615 (28%), Positives = 293/615 (47%), Gaps = 44/615 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D +V+YVGKA L+ R++SY H + T ++ +I N F VT + Sbjct: 16 VPFEPGCYLMKDRNDQVIYVGKAKRLRNRLRSYFTGA-HDAKTTRLVGEIRNFEFIVTSS 74 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L R G YFGP+ Sbjct: 75 ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKHPKLIVTRTVKKGTGKYFGPY 133 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + ++T L R + R + + CL + I +C GPC ++ + Y + Sbjct: 134 PNAYSAQETKKLLDRIYPFRK----CDKMPDKLCLYYHIGQCMGPCVYDVDQQVYAQMTR 189 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E FL+G + + + + M A+ K D+E A +RD + + ++ + + Sbjct: 190 EISDFLNGEDKTILKNLEDRMMDASEKLDFERAKEYRDLIQHIHNLTKKQKIMSSDNTIR 249 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC-PE 301 D F +K CIQ F G + +S + ++ + + ++ P+ Sbjct: 250 DVFGYNVSKGWMCIQVFFIRQGNLIQRDATMIPLQQQSEEEEFYTFIGQFYSLNQHILPK 309 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----S 357 + + + ++ + + K I P +G K+++++ A NA + K Sbjct: 310 EVHVPKNLDKDMIQSVVDTK-------IVQPARGAKKEMVDLANHNAEVALENKFELIAR 362 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 E +++ ++ + P RIE +DNS+I G V MV + K YRK+ + Sbjct: 363 DESRTIKAIEELGERMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKADKKGYRKYKI 421 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 V DD MR V+ RR+++++ PD++I+DGGKG +S Sbjct: 422 KT--VDGPDDYKSMREVVRRRYTRVLNEG--------------LPLPDLIIVDGGKGHMS 465 Query: 478 AAQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 VL+ +L ++ I + + K K E + E + L Y + R++DE Sbjct: 466 GVLDVLENELGLD--IPVAGLRKNDKHQTS-ELLYGPNAEVVPLKKNSQAFYLLHRIQDE 522 Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 HRFAIT HR+ R+K S LD ++GIG RK LL++FG++K + +S L G+ Sbjct: 523 VHRFAITFHRQTRQKTGLQSVLDTVDGIGSKRKTSLLRTFGSIKKMKEASVVDLKKA-GL 581 Query: 596 SKKIACKIYNHFHKN 610 +K+A + + Sbjct: 582 PEKVALNLQQALSND 596 >gi|6116772|dbj|BAA85760.1| UVR-C protein [Deinococcus radiodurans] Length = 610 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 172/631 (27%), Positives = 292/631 (46%), Gaps = 47/631 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PGVY G +Y+GKA NL+ R+ + + + + T + ++ F Sbjct: 2 LPTTPGVYIFR-KGGVPIYIGKANNLRSRVSQHFKAGGKSGKFTKL---AESLEFISAAN 57 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 EVEAL+LEAN+IK+ +P +N+LL+DDK +P++ +T+ P L R +Y+GP+ Sbjct: 58 EVEALVLEANLIKQHRPHYNVLLKDDKHYPFLKLTN-EAYPMLVVTRRVLKDGANYYGPY 116 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 AV + + + F LR + + + RPCL + + RC GPC ++Y + V Sbjct: 117 PDASAVRRVKHLIDTMFPLRKNSGLPMQKKPRPCLNYHMGRCLGPCIDAAQPDEYRQAVE 176 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH----IQNHNDSIYNR 241 + K L G + ++ +M A +D+E A RDR+ A+ Q+ S Sbjct: 177 DVKALLEGRAAPVIARLKEDMKVAAQGQDFEQAARLRDRVQAVEKLFGTEQHAFVSEETD 236 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-CP 300 +D A +Q G+ G FL E+ +I+ F+ +YT P Sbjct: 237 LDFLGAAQAGEFAMVQLFRMRGGRVVGRDKRFLTGADETGLGEIIGAFVADYYTQATHVP 296 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH--RSHTQKLST 358 ILL E E+ +L +Q G +V++ PK+G+K +IE A NA L Sbjct: 297 PLILLPAEYEDAALWSEFLSRQAGRRVEMRTPKRGDKTDLIEMAQRNAAVGLDSEMALLE 356 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 L ALP P RIE YDNS++ G + V MVV + ++R+F + Sbjct: 357 RRGDHPGLDALKDVLALPERPWRIEGYDNSNLFGTNIVSGMVVFEGGRSRRGEHRRFKVR 416 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 ++ DD M+ + RRF+ + ++ PD++++DGG+GQ++A Sbjct: 417 G--LEHPDDYESMKQTIYRRFTGSLADK--------------LPLPDLMLIDGGRGQVNA 460 Query: 479 AQGVLKKLNVENRITIISIAKGPKR-------------SAGMEKFFVKKGEALVLNMRDP 525 A LK+ V ++ ++ +AK +R G E L+L P Sbjct: 461 ALDALKEAGV--QVPVVGLAKREERLILPGRYGAQWWLETGTEV---GVDRELLLPHTHP 515 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 L + +RDE H +A++ HRK R + S D++ GIG R+ LL+ F +++ ++ + Sbjct: 516 ALRMLIGVRDEVHNYAVSYHRKLRGEGMLRSVFDDLPGIGQKRRDALLEHFTSLEDLAAA 575 Query: 585 SPETLASIEGISKKIACKIYNHFHKNTSHTP 615 E +A++ G++ + A + + P Sbjct: 576 PVEHIAAVPGMTLRAAQSVKEFLQAREAQLP 606 >gi|15806371|ref|NP_295077.1| excinuclease ABC subunit C [Deinococcus radiodurans R1] gi|81551289|sp|Q9RUN0|UVRC_DEIRA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|6459106|gb|AAF10924.1|AE001981_9 excinuclease ABC, subunit C [Deinococcus radiodurans R1] Length = 617 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 172/631 (27%), Positives = 292/631 (46%), Gaps = 47/631 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PGVY G +Y+GKA NL+ R+ + + + + T + ++ F Sbjct: 9 LPTTPGVYIFR-KGGVPIYIGKANNLRSRVSQHFKAGGKSGKFTKL---AESLEFISAAN 64 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 EVEAL+LEAN+IK+ +P +N+LL+DDK +P++ +T+ P L R +Y+GP+ Sbjct: 65 EVEALVLEANLIKQHRPHYNVLLKDDKHYPFLKLTN-EAYPMLVVTRRVLKDGANYYGPY 123 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 AV + + + F LR + + + RPCL + + RC GPC ++Y + V Sbjct: 124 PDASAVRRVKHLIDTMFPLRKNSGLPMQKKPRPCLNYHMGRCLGPCIDAAQPDEYRQAVE 183 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH----IQNHNDSIYNR 241 + K L G + ++ +M A +D+E A RDR+ A+ Q+ S Sbjct: 184 DVKALLEGRAAPVIARLKEDMKVAAQGQDFEQAARLRDRVQAVEKLFGTEQHAFVSEETD 243 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-CP 300 +D A +Q G+ G FL E+ +I+ F+ +YT P Sbjct: 244 LDFLGAAQAGEFAMVQLFRMRGGRVVGRDKRFLTGADETGLGEIIGAFVADYYTQATHVP 303 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH--RSHTQKLST 358 ILL E E+ +L +Q G +V++ PK+G+K +IE A NA L Sbjct: 304 PLILLPAEYEDAALWSEFLSRQAGRRVEMRTPKRGDKTDLIEMAQRNAAVGLDSEMALLE 363 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 L ALP P RIE YDNS++ G + V MVV + ++R+F + Sbjct: 364 RRGDHPGLDALKDVLALPERPWRIEGYDNSNLFGTNIVSGMVVFEGGRSRRGEHRRFKVR 423 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 ++ DD M+ + RRF+ + ++ PD++++DGG+GQ++A Sbjct: 424 G--LEHPDDYESMKQTIYRRFTGSLADK--------------LPLPDLMLIDGGRGQVNA 467 Query: 479 AQGVLKKLNVENRITIISIAKGPKR-------------SAGMEKFFVKKGEALVLNMRDP 525 A LK+ V ++ ++ +AK +R G E L+L P Sbjct: 468 ALDALKEAGV--QVPVVGLAKREERLILPGRYGAQWWLETGTEV---GVDRELLLPHTHP 522 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 L + +RDE H +A++ HRK R + S D++ GIG R+ LL+ F +++ ++ + Sbjct: 523 ALRMLIGVRDEVHNYAVSYHRKLRGEGMLRSVFDDLPGIGQKRRDALLEHFTSLEDLAAA 582 Query: 585 SPETLASIEGISKKIACKIYNHFHKNTSHTP 615 E +A++ G++ + A + + P Sbjct: 583 PVEHIAAVPGMTLRAAQSVKEFLQAREAQLP 613 >gi|291516035|emb|CBK65245.1| Excinuclease ABC subunit C [Alistipes shahii WAL 8301] Length = 607 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 176/623 (28%), Positives = 301/623 (48%), Gaps = 50/623 (8%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVTC 64 +P PGVYQ +D +G ++YVGKA +L+KR+ SY S H+ ++ ++ QI IR V Sbjct: 16 LPLSPGVYQFVDRSGTIIYVGKAKSLRKRVSSYFVQSKEHSAKVRVLVKQIVEIRHIVVG 75 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E +ALLLE ++IK L+PR+NILL+DDK++P+I++ +H P + R + YFGP Sbjct: 76 SETDALLLENSLIKSLQPRYNILLKDDKTYPWIVVRREH-FPRVQSTRILTRDGSQYFGP 134 Query: 125 FASVDAVEKTINSLQRTFFLRSCADS-----VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 + SV ++ ++ LR+C + + + + CL + + C PC G S E+ Sbjct: 135 YGSVMMQRSVLDFIREVIPLRTCKLNLAPELIAKDKYTVCLQYHLGNCKAPCVGRQSEEE 194 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237 Y + V L G +++ + M +A + +E A ++ RL AL + + Sbjct: 195 YAQLVGMVVSVLKGDLRPVRQYLEGEMARAAGELKFELAQRYKQRLDALDNYAGRSVIVS 254 Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 +D FSL + ++A G G T L T + +L+ ++ + Sbjct: 255 AKIVDVDVFSLLPDDDVAWCNFVRIRHGSVVGVQTVKLSTGVGADERDMLTLAIQHIVEN 314 Query: 297 ---KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 +++ T L E V TVPK+GEK +++E + +A Sbjct: 315 IAGGELSREVIVPLLPSTTLLFE---------GVTFTVPKRGEKLELLEFSRKSARIYRA 365 Query: 354 QKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 ++L E + ++ K+ L P+ IE +DNS++ G V VV + Sbjct: 366 EQLKNLEIKNPERYTERLMNAVQKELRLDRQPRHIECFDNSNLQGAHPVASCVVFRDGKP 425 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 + +YR FN+ V DD A MR V+ RR+++L+ PD++ Sbjct: 426 SRKEYRHFNIKT--VTGADDYASMREVVFRRYTRLMAEG--------------AEMPDLI 469 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPIL 527 I DGGKGQ+ VL++L ++ I I +AK + E + + P+ Sbjct: 470 IADGGKGQMGVIHEVLERLGLD--IPIAGLAKDDRHRTA-ELLCGFPPVLVGIRPTSPLF 526 Query: 528 YFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586 +F+ +++E HRFA++ HR++R KA +S L++I G+G + LL+ F TV+ + ++ Sbjct: 527 HFLAHIQEEVHRFAVSFHRQKRSKAFIHSELEQIEGVGDKTVQTLLRHFRTVEKVRAANI 586 Query: 587 ETLASIEGISKKIACKIYNHFHK 609 E L+++ G A KI F K Sbjct: 587 EELSALVG--AAKAKKIRAFFEK 607 >gi|320528427|ref|ZP_08029589.1| excinuclease ABC subunit C [Solobacterium moorei F0204] gi|320131341|gb|EFW23909.1| excinuclease ABC subunit C [Solobacterium moorei F0204] Length = 594 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 178/621 (28%), Positives = 291/621 (46%), Gaps = 45/621 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P PG YQM D G ++YVGKA NL R+ Y H + T M+S I++ F Sbjct: 9 KLKNLPNEPGSYQMKDKNGEIIYVGKAKNLHNRMNQYFVGA-HDFKTTKMVSNIDDFDFI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI-QGS 120 VT +E EAL+LE N+IK+ +P++NI DD S+PYI +T K K P L RD+ + Sbjct: 68 VTRSEKEALVLEINLIKKYRPKYNIQFIDDSSYPYIKLT-KEKYPRLLIARDTKKDKKAK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGPF A T+ LQ + R C + CL + + +C GPC +I + Y Sbjct: 127 YFGPFPDATAARTTLKLLQSLYPFRRCTHLEP----KVCLYYHMHQCIGPCEFDIDPKVY 182 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH----IQNHND 236 E + +F++G +++ ++ M +A+ ++E A +++ L ++ H QN Sbjct: 183 DEMSDKVVRFMNGDTKDVEAELQTKMLEASQALEFEKAQEYKEMLESIRHVVNDKQNIEK 242 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 D F+ Y K I G + + FL Q+Y D Sbjct: 243 DNRGSRDVFAWYTKKGYLAITGFLVREGTILNKEFRL--RPLYGEAEEEFTSFLVQYYQD 300 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P ++L E + T+L ++ + I P++G K K+++ + NA + K Sbjct: 301 HPSARELVLPMELDVTALQDVL-------DMPIFQPQKGYKVKLLDMCIENAKKQLDLKF 353 Query: 357 STEISHQMILKDFTKKFAL--PHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + + + + H R+E++DNSHI G V VV + + YR Sbjct: 354 NAVARQDTLTEQAVAQLCDIAKHPMNRVELFDNSHISGAFTVASCVVYEDGYPDRKSYRL 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + LH D M+ V+ RR+ +++ PD +I+DGG+ Sbjct: 414 YKLHT----GNSDVDSMKEVIYRRYFRMLNEG--------------TRMPDGIIVDGGRT 455 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q+ AA+ +L L++ + I ++ + K K S G+ ++ + + + R++ Sbjct: 456 QIDAAKEILDSLDLSDTIKLMGLVKDDKHSTNA--LMDANGDIFDIDKDSGLFFLLTRMQ 513 Query: 535 DEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HR AIT HRK R KA S LDEI G+GP RK+LLL+ FG + ++ E +A I Sbjct: 514 DEVHRVAITYHRKLRAKAQTKSVLDEITGVGPKRKKLLLKEFGNFTNLKAATVEDIAKI- 572 Query: 594 GISKKIACKIYNHFHKNTSHT 614 I ++A +Y+ H+ +T Sbjct: 573 -IPSEVAQAVYDALHQTYENT 592 >gi|81240555|gb|ABB61265.1| excinuclease ABC, subunit C [Shigella dysenteriae Sd197] Length = 553 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 197/568 (34%), Positives = 306/568 (53%), Gaps = 31/568 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D G V+YVGKA +L+KR+ SY SN + + +++QI I TVT TE EALLLE Sbjct: 1 MYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTETEALLLEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YFGPF + AV +T Sbjct: 61 NYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193 + LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y + V + FLSG Sbjct: 120 LALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NRMDCFSLYHNK 251 + + ++ M A+ ++E A RD++ A+ + + +D + + Sbjct: 180 KDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGDDLDVIGVAFDA 239 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSE 307 +AC+ F G+ G+ ++F K + ++++ F+ QFY + P ILL Sbjct: 240 GMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDF 299 Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367 + +LL S + G K+ + +G++ + ++ A NA + T KLS + + L Sbjct: 300 NLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLT 359 Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427 LP + R+E +D SH MG V VV NG ++ +YR++N+ + DD Sbjct: 360 ALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNI--TGITPGDD 416 Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487 A M VL RR+ + I + + PDV+++DGGKGQL+ A+ V +L+ Sbjct: 417 YAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQLAQAKNVFAELD 461 Query: 488 V---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 V +N ++ +AKG R AG+E F +GE L P L+ IQ +RDE+H AI Sbjct: 462 VSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIG 521 Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRL 570 HRK+R K S L+ I G+GP R++ Sbjct: 522 GHRKKRAKVKNTSSLETIEGVGPKRRQN 549 >gi|34581500|ref|ZP_00142980.1| excinuclease ABC subunit C [Rickettsia sibirica 246] gi|28262885|gb|EAA26389.1| excinuclease ABC subunit C [Rickettsia sibirica 246] Length = 639 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 231/630 (36%), Positives = 344/630 (54%), Gaps = 24/630 (3%) Query: 1 MSSEQM--PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNI 58 + S+ + PE GVY+M D+ +VLYVGKA NL+KR+ +Y +N ++ MI+ + Sbjct: 11 IKSKLIDAPERSGVYRMFDVNKQVLYVGKAKNLKKRLTNY-IKSNLDNKTLRMIANTCFL 69 Query: 59 RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118 +++T +EVEALLLEA +IK+ +P+FNILL+D KSFP+I + H P L K+R + Sbjct: 70 EYSITNSEVEALLLEAQLIKKFQPKFNILLKDCKSFPFIKLRLDHDFPQLLKYRGKTLSD 129 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 G +FGPFAS V T+ LQ+ F LRSC D+ F RTRPCL ++IKRC PC G+I+ E Sbjct: 130 GKFFGPFASSAEVNTTLTELQKIFKLRSCTDNYFNSRTRPCLQYEIKRCYAPCVGKINKE 189 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y + V + K FL G L+E ++R M + + + +E A RDR+ ALS++Q Sbjct: 190 DYRDLVTQVKDFLQGRTKELQENLSRKMEELSSQMRFEEAAEIRDRIKALSYVQLKAGVS 249 Query: 239 --YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 D ++ C++ + GQ G +F + ST ++L YFL QFY Sbjct: 250 DVVKDADIIAIVEKNGHYCVEVFLYRAGQACGNIPYFPTSTENSTKEEVLEYFLLQFYQK 309 Query: 297 KPCPENILLSEEAEETS-LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P I+++ E + ++E ++ ITVP +G K K+++ A NA S Q Sbjct: 310 QHVPAAIIINHEINDKENVIEAIKKINNILQINITVPNKGGKAKLVQNAETNALFSLEQY 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L +Q I+ + + F L IP+RIEIYDNSHI G AVG MVV G+ GF K +YR F Sbjct: 370 LKKFAKNQEIMFEIKELFGLSEIPERIEIYDNSHIQGKFAVGVMVVAGKVGFDKKEYRVF 429 Query: 416 NLH-PNDVKTQDDCAMMRMVLERRFS--------------QLIKNEENLNFHPKKQEYSF 460 N+H P+ V + + +++ F + L + Sbjct: 430 NVHAPSFVCHSRESGDPKRLMDSCFRGNGIKNCGGDIKGDDYEMLRQVLTRRLTRLRQEP 489 Query: 461 PSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVL 520 P ++I+DGGKG L + V+ K E I + ++KG R+AG E+F V E L Sbjct: 490 HKLPSLMIIDGGKGHLGVVKEVMDKF--EMNIPFVCMSKGVDRNAGFEQFHVIGKEVFTL 547 Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVK 579 + P++ ++Q LRDEAH FAI HR R +A S LD+I G+G RK+ LL FG+ K Sbjct: 548 DKNLPVMKYLQILRDEAHNFAIKNHRLGRSRAIKISRLDDIEGVGETRKKALLHYFGSYK 607 Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHK 609 + ++ LA + GI+K +A I+N H+ Sbjct: 608 AVCDATIYELAKVNGINKLLAEMIFNVLHR 637 >gi|302330801|gb|ADL20995.1| UvrABC system protein C [Corynebacterium pseudotuberculosis 1002] Length = 669 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 174/635 (27%), Positives = 294/635 (46%), Gaps = 69/635 (10%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA NL+ R+ +Y + R M++ +++ +TV Sbjct: 13 SIPTDPGVYKFRDSHGRVVYVGKAKNLRSRLSNYFQDLSVLHPRTRQMVTTASSVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +EVEAL LE IK+ PRFN+ RDDK++P + ++ + P + +R YFG Sbjct: 73 SSEVEALQLEYTWIKKFDPRFNVKYRDDKTYPMLAVSVGERFPRAFFYRGPQRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ AV +T++ L R F +R+C+ VF RPCLL I +CS PC G ++ +++ Sbjct: 133 PYSHAWAVRETLDLLTRVFPVRTCSKGVFNRHESLGRPCLLGYIDKCSAPCIGRVTEQEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + V+ F++G + + M A + D+E A RD + A+ I + Sbjct: 193 RDIVNGFCSFMAGKTDAVVASLNSQMLTAAEELDFERAARLRDDIHAVQKITEQQAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT--DSESTNAQILSYFLRQFYT 295 D ++ + A IQ G+ +G + ++ DSE ++L FL +FYT Sbjct: 253 DGTDADVIAISADDLEASIQLFHVRAGRVKGQRGWIVERTGDSEEELQELLQAFLIRFYT 312 Query: 296 DKP-------------------------------------CPENILLSEEAEETSLLEIS 318 D P+ +L+ + +++ Sbjct: 313 DAVELEEETNKEEENVIRRGVDQFSYVDEHLSSHQLRGSMIPKEVLVEIAPLDLEHTKVA 372 Query: 319 FFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLSTEISHQMILKDFTKKFA 374 + G V + VP +G+KR ++E NA + +++ + L++ + Sbjct: 373 LSELRGSLVDLRVPARGDKRALMETVHANAVETLRQHKLKRVGDLTARSAALQELQEALF 432 Query: 375 LPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRM 433 L P RIE D SHI G V +VV + K+ YR++ + +D A + Sbjct: 433 LEEAPLRIECIDISHIQGTDVVASLVVFEDGLPKKSDYRRYKIKDAAGDGHSNDVASIAE 492 Query: 434 VLERRFSQLIKNEENLNFHPK-----------KQEYSFPSWPDVVILDGGKGQLSAAQGV 482 V+ RRF + K+ + + + F P + I+DGG Q++AA + Sbjct: 493 VVRRRFIRHHKDRLTVPEAEEFDGSTFTDETVEHSKRFAYPPQLFIVDGGSPQVAAADAI 552 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 ++L V N + ++ IAK + E + + E ++L +Y +Q++RDEAHRFAI Sbjct: 553 FEELGV-NDVALVGIAKRLE-----ELWIPQDDEPVILPRNSQAMYLVQQIRDEAHRFAI 606 Query: 543 TTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFG 576 HR++R K S LD I G+G R+ L++ FG Sbjct: 607 AFHRQQRSKRMRTSALDNIKGLGQTRRTELVKHFG 641 >gi|238650635|ref|YP_002916487.1| excinuclease ABC subunit C [Rickettsia peacockii str. Rustic] gi|259710347|sp|C4K1I8|UVRC_RICPU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|238624733|gb|ACR47439.1| excinuclease ABC subunit C [Rickettsia peacockii str. Rustic] Length = 639 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 230/630 (36%), Positives = 343/630 (54%), Gaps = 24/630 (3%) Query: 1 MSSEQM--PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNI 58 + S+ + PE GVY+M D+ +VLYVGKA NL+KR+ +Y +N ++ MI+ + Sbjct: 11 IKSKLIDAPERSGVYRMFDVNKQVLYVGKAKNLKKRLTNY-IKSNLDNKTLRMIANTCFL 69 Query: 59 RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118 +++T +EVEALLLEA +IK+ +P+FNILL+D KSFP+I + H P L K+R + Sbjct: 70 EYSITNSEVEALLLEAQLIKKFQPKFNILLKDCKSFPFIKLRLDHDFPQLLKYRGKTLSD 129 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 G +FGPFAS V T+ LQ+ F LRSC D+ F RTRPCL ++IKRC PC G+I+ E Sbjct: 130 GKFFGPFASSAEVNTTLTELQKIFKLRSCTDNYFNSRTRPCLQYEIKRCYAPCVGKINKE 189 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y + V + K FL G L+E ++R M + + + +E A RDR+ ALS++Q Sbjct: 190 DYRDLVTQVKDFLQGRTKELQENLSRKMEELSSQMRFEEAAEIRDRIKALSYVQLKAGVS 249 Query: 239 --YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 D ++ C++ + GQ G +F + ST ++L YFL QFY Sbjct: 250 DVVKDADIIAIVEKNGHYCVEVFLYRAGQACGNIPYFPTSTENSTKEEVLEYFLLQFYQK 309 Query: 297 KPCPENILLSEEAEETS-LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P I+++ E + ++E ++ ITVP +G K K+++ A NA S Q Sbjct: 310 QHVPAAIIINHEINDKENVIEAIKKINNILQLNITVPNKGGKAKLVQNAETNALFSLEQY 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L +Q I+ + + F L IP+RIEIYDNSHI G AVG MVV G+ GF K +YR F Sbjct: 370 LKKFAKNQEIMFEIKELFGLSEIPERIEIYDNSHIQGKFAVGVMVVAGKVGFDKKEYRVF 429 Query: 416 NLH-PNDVKTQDDCAMMRMVLERRFS--------------QLIKNEENLNFHPKKQEYSF 460 N+H P+ V + + +++ F + L + Sbjct: 430 NVHAPSLVCHSRESGDPKRLMDSCFRGNGIKNCGGDIKGDDYEMLRQVLTRRLTRLRQEP 489 Query: 461 PSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVL 520 P ++I+DGGKG L + V+ K E I + ++KG R+ G E+F V E L Sbjct: 490 HKLPSLMIIDGGKGHLGVVKEVMDKF--EMNIPFVCMSKGVDRNTGFEQFHVIGKEVFTL 547 Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVK 579 + P++ ++Q LRDEAH FAI HR R +A S LD+I G+G RK+ LL FG+ K Sbjct: 548 DKNLPVMKYLQILRDEAHNFAIKNHRLGRSRAIKISRLDDIEGVGETRKKALLHYFGSYK 607 Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHK 609 + ++ LA + GI+K +A I+N H+ Sbjct: 608 AVCDATIYELAKVNGINKLLAEMIFNVLHR 637 >gi|310657857|ref|YP_003935578.1| uvrABC system protein c (protein uvrc) (excinuclease ABC subunit c) [Clostridium sticklandii DSM 519] gi|308824635|emb|CBH20673.1| UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C) [Clostridium sticklandii] Length = 587 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 184/612 (30%), Positives = 317/612 (51%), Gaps = 39/612 (6%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFTVTCTEVEALLLE 73 M D +V+YVGKA +L+ R++ Y S + ++ M+S I+ + VT +E+EAL+LE Sbjct: 1 MKDKDKKVIYVGKAISLKNRVRQYFQSKKNMDAKVRAMVSHIDEFEYIVTDSEMEALILE 60 Query: 74 ANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEK 133 N+IK KP++NILLRDDK++PYI +T P + K R + YFGP+ + V + Sbjct: 61 NNLIKEYKPQYNILLRDDKTYPYIKVTLNEYFPRVLKVRKVEKDKAKYFGPYTNAFIVNE 120 Query: 134 TINSLQRTFFLRSCADSVFR---HRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKF 190 T++ ++ + +R+C + R + RPCL IK+C GPCTG++ +YM+ ++E F Sbjct: 121 TLDVIKEIYPIRTCTRDIKRSIEKKERPCLNLYIKKCVGPCTGKVDEAEYMKMIYEIIDF 180 Query: 191 LSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSL 247 LSG + ++ + M QA D+E A RD+++++ + + D ++ Sbjct: 181 LSGKSEDMISILEEKMRQAAKNLDFEEAATLRDKISSMKGMLERQKIVSASTIDQDYIAV 240 Query: 248 YHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-KPCPENILLS 306 ++L+C+Q F G+ G F S +I+S F++QFY P+ +++ Sbjct: 241 AKEEDLSCVQVFFVRGGKVVGRENFIFDKSRNSQAEEIISSFIKQFYMSVNYVPKELVVD 300 Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLSTEISH 362 + E+ ++ + G KV+ITVP++G+K+ +++ NA + K++ Sbjct: 301 TDFEDMQIMSDWLSSKKGQKVQITVPQKGDKKHLLDLVRKNAFETIKQKSNLKMAKLERT 360 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 ++K+ + L +P R+E +D S+I G +VG VV K YR++ + V Sbjct: 361 VGVMKELQEFLQLDEMPIRVEAFDISNIQGVDSVGAQVVFVNGEKAKKLYRRYKIKS--V 418 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 +D A M ++ RR P PD++++DGGKGQ+S A+ V Sbjct: 419 DGPNDYASMEEIIRRRLKH-------------------PDLPDLILMDGGKGQVSVAKKV 459 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 + + + I ++ + K + + +A+ L+ I FI +++E HRFAI Sbjct: 460 IAEEGLS--IPVLGMYKDSRHKT---LGLTTENQAVELSKHSLIYRFIASVQEEVHRFAI 514 Query: 543 TTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 + HR R K S LDEI+GIG RK L+ F T++ + ++ E LAS+EG++KK A Sbjct: 515 SYHRSLRDKGMEKSELDEISGIGKTRKMALISEFKTIERLKNATMEELASVEGMNKKSAQ 574 Query: 602 KIYNHFHKNTSH 613 ++ HF K Sbjct: 575 AVFEHFRKGQKS 586 >gi|237720612|ref|ZP_04551093.1| excinuclease ABC subunit C [Bacteroides sp. 2_2_4] gi|229450363|gb|EEO56154.1| excinuclease ABC subunit C [Bacteroides sp. 2_2_4] Length = 613 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 168/625 (26%), Positives = 301/625 (48%), Gaps = 47/625 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PG+YQ L+ G ++YVGKA NL+KR+ SY + + ++S+I +IR+ V Sbjct: 19 NLPEKPGIYQYLNTEGTIIYVGKAKNLKKRVYSYFSKEHEPGKTRVLVSKIADIRYIVVN 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + + P +++ R SY+GP Sbjct: 79 TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRVFRTRKIIRNGSSYYGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + ++ ++ ++ + LR+C +++ + CL + IK C+GPC G S E Sbjct: 138 YSHIPSMYAVLDLIKHLYPLRTCSLNLTPENIRAGKFNVCLEYHIKNCAGPCIGLQSQED 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y++ + E K+ L G + + M + +E A +++ + + ++ ++ + Sbjct: 198 YLKNIDEIKEILKGNTQEISRMLLERMQTLAGEMKFEEAQKVKEKYLLIENYRSKSEVVS 257 Query: 240 NRMDCFSLYHNK----NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + ++ + N A I G TF K + ++L+ + + Sbjct: 258 AVLHNIDVFSIEEDESNSAFINYLHITNGAINQAFTFEYKKKLNESKEELLTLGIIEMRE 317 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ + L I F VP++G+K+K+++ +++N + + Sbjct: 318 RYKSQSREIIVPFELDLELNNIVFT----------VPQRGDKKKLLDLSILNVKQYKADR 367 Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 L E ++K+ ++ L P +IE +DNS+I G AV VV + K Sbjct: 368 LKQAEKLNPEQRSMRLMKEIQQELHLDRPPLQIECFDNSNIQGSDAVAACVVFKKAKPSK 427 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 YRK+N+ V DD A M+ V+ RR+ + I+ PD++I Sbjct: 428 KDYRKYNIKT--VVGPDDYASMKEVVRRRYQRAIEEN--------------APLPDLIIT 471 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ+ + V++ + I I +AK R E F + + + + P+ Sbjct: 472 DGGKGQMEVVREVIED-ELNLTIPIAGLAK-DNRHRTSELLFGFPPQTIGIKQQSPLFRL 529 Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 + +++DE HRFAI+ HR +R K S LD I GIG K LL+ F +VK I +S E Sbjct: 530 LTQIQDEVHRFAISFHRDKRSKRQVASALDNIKGIGEKTKTALLKEFKSVKRIKEASFEE 589 Query: 589 LASIEGISKKIACKIYNHFHKNTSH 613 ++++ I + A + +S Sbjct: 590 ISAV--IGEAKAKTVKAGLSDESSE 612 >gi|229586905|ref|YP_002845406.1| excinuclease ABC subunit C [Rickettsia africae ESF-5] gi|259710346|sp|C3PP03|UVRC_RICAE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|228021955|gb|ACP53663.1| Excinuclease ABC subunit C [Rickettsia africae ESF-5] Length = 639 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 231/630 (36%), Positives = 344/630 (54%), Gaps = 24/630 (3%) Query: 1 MSSEQM--PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNI 58 + S+ + PE GVY+M D+ +VLYVGKA NL+KR+ +Y +N ++ MI+ + Sbjct: 11 IKSKLIDAPERSGVYRMFDVNKQVLYVGKAKNLKKRLTNY-IKSNLDNKTLRMIANTCFL 69 Query: 59 RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118 +++T +EVEALLLEA +IK+ +P+FNILL+D KSFP+I + H P L K+R + Sbjct: 70 EYSITNSEVEALLLEAQLIKKFQPKFNILLKDCKSFPFIKLRLDHDFPQLLKYRGKTLSD 129 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 G +FGPFAS V T+ LQ+ F LRSC D+ F RTRPCL ++IKRC PC G+I+ E Sbjct: 130 GKFFGPFASSAEVNTTLTELQKIFKLRSCTDNYFNSRTRPCLQYEIKRCYAPCVGKINKE 189 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y + V + K FL G L+E ++R M + + + +E A RDR+ ALS++Q Sbjct: 190 DYRDLVTQVKDFLQGRTKELQENLSRKMEELSSQMRFEEAAEIRDRIKALSYVQLKAGVS 249 Query: 239 --YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 D ++ C++ + GQ G +F + ST ++L YFL QFY Sbjct: 250 DVVKDADIIAIVEKNGHYCVEVFLYRAGQACGNIPYFPTSTENSTKEEVLEYFLLQFYQK 309 Query: 297 KPCPENILLSEEAEETS-LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P I+++ E + ++E ++ ITVP +G K K+++ A NA S Q Sbjct: 310 QHVPAAIIINHEINDKENVIEAIKKINNILQINITVPNKGGKAKLVQNAETNALFSLEQY 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L +Q I+ + + F L IP+RIEIYDNSHI G AVG MVV G+ GF K +YR F Sbjct: 370 LKKFAKNQEIMFEIKELFGLSEIPERIEIYDNSHIQGKFAVGVMVVAGKVGFDKKEYRVF 429 Query: 416 NLH-PNDVKTQDDCAMMRMVLERRFS--------------QLIKNEENLNFHPKKQEYSF 460 N+H P+ V + + +++ F + L + Sbjct: 430 NVHAPSLVCHSRESGDPKRLMDSCFRGNGIKNCGGDIKGDDYEMLRQVLTRRLTRLRQEP 489 Query: 461 PSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVL 520 P ++I+DGGKG L + V+ K E I + ++KG R+AG E+F V E L Sbjct: 490 HKLPSLMIIDGGKGHLGVVKEVMDKF--EMNIPFVCMSKGVDRNAGFEQFHVIGKEVFTL 547 Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVK 579 + P++ ++Q LRDEAH FAI HR R +A S LD+I G+G RK+ LL FG+ K Sbjct: 548 DKNLPVMKYLQILRDEAHNFAIKNHRLGRSRAIKISRLDDIEGVGETRKKALLHYFGSYK 607 Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHK 609 + ++ LA + GI+K +A I+N H+ Sbjct: 608 AVCDATIYELAKVNGINKLLAEMIFNVLHR 637 >gi|281491329|ref|YP_003353309.1| excinuclease ABC subunit C [Lactococcus lactis subsp. lactis KF147] gi|281375070|gb|ADA64588.1| Excinuclease ABC, subunit C [Lactococcus lactis subsp. lactis KF147] Length = 668 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 177/664 (26%), Positives = 296/664 (44%), Gaps = 85/664 (12%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D G V+YVGKA NL+ R++SY H +++T + ++S+I ++ + Sbjct: 8 KLELLPDSPGCYLHKDKNGTVIYVGKAKNLKNRVRSYFHGSHNT-KTELLVSEIEDLEWI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V + +E+L+LE N+I+R KP++NI+L+DDK +P++ IT+ K P L R +Y Sbjct: 67 VVGSNIESLVLEINLIQRYKPKYNIMLKDDKYYPFLKITN-EKYPRLLVVRKVQKDGATY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C H + C F I +C P + + Y Sbjct: 126 FGPYPDVKAANEVKRLLDRIFPFRKCGL----HEKKVCFYFHIHQCLCPVVNHVDPQVYK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 + E K+FL+G + + +++ M ++ ++E A +RD + A+ ++ + Sbjct: 182 DMTQEVKEFLTGSDKKIVKELEAKMMISSDNMEFEQAAEYRDVIKAIGTLRTKQRVMNQD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ +++ + + Sbjct: 242 LKDRDVFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDAEEDFLTYIGQFYQDNNHM 301 Query: 299 CPENILLSEEAE------------------------------------------------ 310 P I + ++ + Sbjct: 302 MPREIFIPQDIDKESVEAVVAASQEGNLLTNAQAKEVDAKVFTAKTLKFSDQKDVEQSIV 361 Query: 311 --ETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLSTEISHQM 364 + L K +I P +GEK++++ A NA + Sbjct: 362 KLDKELSAEKRLSSLLAKTQIVQPSRGEKKQLVNMATKNAQSQLQLKFDVAERDILKTTK 421 Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424 +++ K +P RIE +DNS+IMG S V MVV + K YRK+ + V Sbjct: 422 AVENLGKILGIPKPV-RIESFDNSNIMGTSPVSAMVVFIDGKPSKKDYRKYKIKT--VVG 478 Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484 DD A MR V+ RR+S+ +K E L PD++ +DGG GQ++ A+ VLK Sbjct: 479 ADDYASMREVMTRRYSRALKEETAL--------------PDLIAMDGGAGQVNIAKQVLK 524 Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544 +L + I + + K K E F + + L+ + + + R++DE HRFAIT Sbjct: 525 ELGLS--IPVAGMQKNDKHQTS-ELLFGDPLDVVPLSRQSQEFFLLTRIQDEVHRFAITF 581 Query: 545 HRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 HR+ R K +S LD I G+GP RK+ LL +F +K I +S + +A GI ++A ++ Sbjct: 582 HRQLRGKNTFSSKLDGIVGLGPKRKQKLLTTFKNLKAIEEASVQEVAEA-GIPYEVAERV 640 Query: 604 YNHF 607 Sbjct: 641 KTTL 644 >gi|319900539|ref|YP_004160267.1| Excinuclease ABC subunit C [Bacteroides helcogenes P 36-108] gi|319415570|gb|ADV42681.1| Excinuclease ABC subunit C [Bacteroides helcogenes P 36-108] Length = 616 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 177/622 (28%), Positives = 311/622 (50%), Gaps = 49/622 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PG+YQ L+ G ++YVGKA NL++R+ SY + + + ++S+I +IR+ V Sbjct: 16 NLPENPGIYQYLNAEGVIIYVGKAKNLKRRVSSYFNREHEPGKTRVLVSKIADIRYIVVN 75 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E +ALLLE N+IK+ KPR+N+LL+DDK++P I + + P ++K R SY+GP Sbjct: 76 SEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRVFKTRKIIRNGSSYYGP 134 Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + ++ ++ ++ + LR+C +++ + CL + IK C+GPC G+ + E Sbjct: 135 YSHIPSMYAVLDLIKHLYPLRTCTLNLSPENIRAGKFNVCLEYHIKNCAGPCIGKQTQED 194 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y++ + E K+ L G +++ + + M YE A ++R + + + ++ + Sbjct: 195 YLKNIAEIKEILKGNTQDIERMLFQQMQDLAADMKYEEAQKVKERYLLIENYRCKSEVVS 254 Query: 240 NRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 N + ++ + A I G TF K + ++LS + + Sbjct: 255 NVLHNIDVFSIEEDNDEKSAFINYLHITNGAINQAFTFEYKKRLNESKEELLSLGIIEMR 314 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 ++ + L V T+P++G+K+K++E +++N + Sbjct: 315 ERYKSLSREIIVPFEIDMEL----------KDVVFTIPQRGDKKKLLELSILNVKQYKAD 364 Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 +L E +LK+ ++ L +P +IE +DNS+I G AV VV + Sbjct: 365 RLKQAEKLNPEQRAVRLLKEIQQELHLERLPMQIECFDNSNIQGSDAVAACVVFIKGKPS 424 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 K YRK+N+ V+ DD A M+ V++RR+ + ++ + PD++I Sbjct: 425 KKDYRKYNIKT--VEGPDDYASMKEVVKRRYQRAVEEK--------------TPLPDLLI 468 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 DGGKGQ+SA + V+ +L + I I +AK K E + + + L P+ Sbjct: 469 TDGGKGQMSAVKEVIDELCL--NIPIAGLAKDGKHRTS-ELLYGFPPQTIGLKQNTPLFR 525 Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 + +++DE HRFAI HR +R K S LDEI GIG K LL+ F +VK I +S E Sbjct: 526 LLAQIQDEVHRFAIAFHRDKRSKRQTASALDEIKGIGEKTKAALLKEFKSVKRIKEASFE 585 Query: 588 TLASIEGISKKIACKIYNHFHK 609 L SI G + A I ++F + Sbjct: 586 ELTSITG--EAKANIIRSYFAE 605 >gi|328950288|ref|YP_004367623.1| UvrABC system protein C [Marinithermus hydrothermalis DSM 14884] gi|328450612|gb|AEB11513.1| UvrABC system protein C [Marinithermus hydrothermalis DSM 14884] Length = 603 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 181/617 (29%), Positives = 293/617 (47%), Gaps = 36/617 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PGVY V+YVGKA L+ R+ SY H+ RI + +++ F VT Sbjct: 9 LPEAPGVYLWK-AGDEVIYVGKAKRLKARVTSYFHAEGKPARIA---QEASSLEFIVTRD 64 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E+EALLLEAN+IK PR+N+LL+DDK +P++ +T+ P L R Y+GPF Sbjct: 65 EIEALLLEANLIKAHHPRYNVLLKDDKHYPFLKLTN-EPFPILLVTRRVQDDGARYWGPF 123 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 AV + + R F LR + + R PCL + RC PC G+ Y V Sbjct: 124 PDAGAVRRIKRLIDRVFPLRKNSGYPMKRRRFPCLNHAMGRCLAPCVGQADPAAYAAVVR 183 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA----ALSHIQNHNDSIYNR 241 + ++ L G L ++ M+QA + ++E A RD++ + Q Sbjct: 184 QVEQVLDGRIDALIAQMEARMHQAARETNFELAAEIRDQIQALKAFFNADQQAYALELGD 243 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK-PCP 300 +D A +Q G+ G F++ +E+ +A+IL FLR+ Y + P P Sbjct: 244 LDFLGFARAGGYAMVQLYQMRGGRILGRANRFVEGVNEAEDAEILEAFLREHYLEATPLP 303 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS--T 358 +LL E + L ++ G KV + VP++GEK +++E A NA +L Sbjct: 304 PVVLLPFHVEAEAPLAAFLSQRAGRKVALRVPQRGEKARLLEFAAKNARLGLEAELKRLE 363 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 LK + L H P RIE +D S++MG + V + V+ K++YR+ + Sbjct: 364 RKGDHPALKALAEVLRLSHRPYRIEGFDISNLMGEAVVASIAVLEGGRPKKSEYRRMRIR 423 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 N +D + + RRF+ + ++ PD++++DGG GQ+ A Sbjct: 424 -NLAGRPNDYVAIAEAVYRRFTGSLADK--------------LPVPDLLLIDGGLGQVRA 468 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A L++ + + ++ +AK E + GE + L + P L + LRDE H Sbjct: 469 AAQALERAGLS--VPLVGLAKRE------ETLVLPSGERVTLPLTHPALQLLIHLRDETH 520 Query: 539 RFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 R + +RK R +K S D I GIGP RK++LL+ F T++ + ++ ETLA + G+++ Sbjct: 521 RNGLRYNRKLRTQKHLKSLFDGIPGIGPRRKQVLLEHFSTLEELRQTPLETLARLPGMNR 580 Query: 598 KIACKIYNHFHKNTSHT 614 K A + ++ Sbjct: 581 KAAQAVLEALKQHAPAQ 597 >gi|116511657|ref|YP_808873.1| excinuclease ABC subunit C [Lactococcus lactis subsp. cremoris SK11] gi|116107311|gb|ABJ72451.1| Excinuclease ABC subunit C [Lactococcus lactis subsp. cremoris SK11] Length = 658 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 179/669 (26%), Positives = 300/669 (44%), Gaps = 88/669 (13%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 MP+ PG Y D G V+YVGKA NL+ R++SY H +++T + ++S+I ++ + V + Sbjct: 1 MPDSPGCYLHKDKNGTVIYVGKAKNLKNRVRSYFHGSHNT-KTELLVSEIEDLEWIVVGS 59 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +E+L+LE N+I+R KP++NI+L+DDK +P++ IT+ K P L R +YFGP+ Sbjct: 60 NIESLVLEINLIQRYKPKYNIMLKDDKYYPFLKITN-EKYPRLLVVRKVQKDGATYFGPY 118 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 V A + L R F R C H + C F I +C P + + Y + Sbjct: 119 PDVKAANEVKRLLDRIFPFRKCG----LHEKKVCFYFHIHQCLCPVVNHVDPQVYKDMTQ 174 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNRM 242 E K+FL+G + + +++ M A+ ++E A +RD + A+ ++ + Sbjct: 175 EVKEFLTGSDKKIVKELEGKMISASDNMEFEQAAEYRDVIKAIGTLRTKQRVMNQDLKDR 234 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F Y +K C+Q F G+ +++ + + P Sbjct: 235 DVFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDAEEDFLTYIGQFYQDNNHMMPRE 294 Query: 303 ILLSEEAE--------------------------------------------------ET 312 I + ++ + + Sbjct: 295 IFIPQDIDKDSVEAVVAASQEGNLLTKAQAKAVDAKVFTAKTLKFSDQEDVEQSIVKLDK 354 Query: 313 SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLSTEISHQMILKD 368 L K +I P +GEK++++ A NA + +++ Sbjct: 355 ELSSEKRLSSLLAKTQIIQPSRGEKKQLVNMATKNAQTQLQLKFDVAERDILKTTKAVEN 414 Query: 369 FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDC 428 K +P RIE +DNS+IMG S V MVV + K YRK+ + V DD Sbjct: 415 LGKILGIPKPV-RIESFDNSNIMGTSPVSAMVVFIDGKPSKKDYRKYKIKT--VVGADDY 471 Query: 429 AMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNV 488 A MR V+ RR+S+ +K E L PD++ +DGG GQ++ A+ VL++L + Sbjct: 472 ASMREVMTRRYSRALKEETAL--------------PDLIAMDGGAGQVNIAKEVLRELGL 517 Query: 489 ENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKR 548 I + + K K E F E + L+ + + + R++DE HRFAIT HR+ Sbjct: 518 A--IPVAGMQKNDKHQTS-ELLFGDPLEVVPLSRQSQEFFLLTRIQDEVHRFAITFHRQL 574 Query: 549 RKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 R K +S LD I G+GP RK+ LL +F +K I ++ + +A G+ ++A ++ N Sbjct: 575 RGKNTFSSKLDGIVGLGPKRKQKLLTTFKNLKAIEEATVQEVAEA-GVPYEVAERVKNTL 633 Query: 608 ---HKNTSH 613 HK+ + Sbjct: 634 SAPHKSDEN 642 >gi|328676765|gb|AEB27635.1| Excinuclease ABC subunit C [Francisella cf. novicida Fx1] Length = 612 Score = 458 bits (1179), Expect = e-126, Method: Composition-based stats. Identities = 184/615 (29%), Positives = 317/615 (51%), Gaps = 30/615 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + GVY+MLD G ++YVGKA NL+ R+ SY + M+ QI I T+T Sbjct: 17 NLTTHSGVYRMLDKHGEIIYVGKAKNLKNRVNSYFSKGAKDSKTLMMVEQIARIEITITP 76 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSYFG 123 ++ EA LLE N+IK+ +P++NIL +DDKS+PY++I+ + K P + +R S +G FG Sbjct: 77 SDYEAYLLENNLIKQHRPKYNILFKDDKSYPYLVIS-RDKFPRVSFYRGKSAYKKGQCFG 135 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ S+ +V+ T+N++Q+ F +R C +S ++ R RPCL +QIKRC PC G +S ++Y E Sbjct: 136 PYVSISSVKNTLNTIQKIFPIRQCENSYYKSRVRPCLQYQIKRCLAPCVGLVSQQQYDEQ 195 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR-- 241 + KKFL+G + E+I+ M QA+ +YE A ++RD+L L +Q Sbjct: 196 LAILKKFLAGKFSTVLEEISAKMYQASEDMEYEKAQVYRDQLVVLRKLQQQQIVDIQEDK 255 Query: 242 -MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D +Y + A I G + + I+ FL FY Sbjct: 256 TFDVIGIYMQDSYASIALLQIQNGDVVADRHWSID-AKGQDKTSIMHAFLSHFYLGDEIR 314 Query: 301 ---ENILLSEEAEETSLLEISF--FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ + E + ++ ++ G + + + K ++ A +NA + Sbjct: 315 NIWPKNIILSKVEFADITDLMNSISQKIGQAINWIIAPAADNLKWLKLAEVNARQKLNIY 374 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 S++ +Q L+ + L KRIE +D SH G + + V+ + G + +R++ Sbjct: 375 TSSKSQYQKRLESLKEFLELEKDIKRIECFDISHFQGEATIASCVLYTDEGEDRKSHRRY 434 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ +K DD A + + RR S ++ + PDV+I+DGGKGQ Sbjct: 435 NIKD--IKAGDDYAAIYQAVSRRVSSGLEADN---------------LPDVMIIDGGKGQ 477 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLR 534 + A+ V ++ +++++ ++S+ KG +R +G EK + L+ +P ++++R Sbjct: 478 IHQAEAVFREYGIQDKVELVSLGKGIERISGKEKIYKGFDDTEYTLDEHNPGFLLLRQVR 537 Query: 535 DEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 D AH AI RK+ S ++EI G+GP R++ L+ FG + +SR+S + +A ++ Sbjct: 538 DSAHDHAIKGQRKKVSANRQSSIIEEIEGVGPKRRKALIMYFGGWQELSRASVDEIAKVK 597 Query: 594 GISKKIACKIYNHFH 608 GISKK+A +I+ FH Sbjct: 598 GISKKLAQEIWECFH 612 >gi|300071302|gb|ADJ60702.1| excinuclease ABC subunit C [Lactococcus lactis subsp. cremoris NZ9000] Length = 658 Score = 458 bits (1179), Expect = e-126, Method: Composition-based stats. Identities = 179/669 (26%), Positives = 300/669 (44%), Gaps = 88/669 (13%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 MP+ PG Y D G V+YVGKA NL+ R++SY H +++T + ++S+I ++ + V + Sbjct: 1 MPDSPGCYLHKDKNGTVIYVGKAKNLKNRVRSYFHGSHNT-KTELLVSEIEDLEWIVVGS 59 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +E+L+LE N+I+R KP++NI+L+DDK +P++ IT+ K P L R +YFGP+ Sbjct: 60 NIESLVLEINLIQRYKPKYNIMLKDDKYYPFLKITN-EKYPRLLVVRKVQKDGATYFGPY 118 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 V A + L R F R C H + C F I +C P + + Y + Sbjct: 119 PDVKAANEVKRLLDRIFPFRKCG----LHEKKVCFYFHIHQCLCPVVNHVDPQVYKDMTQ 174 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNRM 242 E K+FL+G + + +++ M A+ ++E A +RD + A+ ++ + Sbjct: 175 EVKEFLTGSDKKIVKELEGKMISASDNMEFEQAAEYRDVIKAIGTLRTKQRVMNQDLKDR 234 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F Y +K C+Q F G+ +++ + + P Sbjct: 235 DVFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDAEEDFLTYIGQFYQDNNHMMPRE 294 Query: 303 ILLSEEAE--------------------------------------------------ET 312 I + ++ + + Sbjct: 295 IFIPQDIDKDSVEAVVAASQEGNLLTKAQAKAVDAKVFTAKTLKFSDQKDVEQSIVKLDK 354 Query: 313 SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLSTEISHQMILKD 368 L K +I P +GEK++++ A NA + +++ Sbjct: 355 ELSSEKRLSSLLAKTQIIQPSRGEKKQLVNMATKNAQTQLQLKFDVAERDILKTTKAVEN 414 Query: 369 FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDC 428 K +P RIE +DNS+IMG S V MVV + K YRK+ + V DD Sbjct: 415 LGKILGIPKPV-RIESFDNSNIMGTSPVSAMVVFIDGKPSKKDYRKYKIKT--VVGADDY 471 Query: 429 AMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNV 488 A MR V+ RR+S+ +K E L PD++ +DGG GQ++ A+ VL++L + Sbjct: 472 ASMREVMTRRYSRALKEETAL--------------PDLIAMDGGAGQVNIAKEVLRELGL 517 Query: 489 ENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKR 548 I + + K K E F E + L+ + + + R++DE HRFAIT HR+ Sbjct: 518 A--IPVAGMQKNDKHQTS-ELLFGDPLEVVPLSRQSQEFFLLTRIQDEVHRFAITFHRQL 574 Query: 549 RKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 R K +S LD I G+GP RK+ LL +F +K I ++ + +A G+ ++A ++ N Sbjct: 575 RGKNTFSSKLDGIVGLGPKRKQKLLTTFKNLKAIEEATVQEVAEA-GVPYEVAERVKNTL 633 Query: 608 ---HKNTSH 613 HK+ + Sbjct: 634 SAPHKSDEN 642 >gi|160883396|ref|ZP_02064399.1| hypothetical protein BACOVA_01365 [Bacteroides ovatus ATCC 8483] gi|293368667|ref|ZP_06615274.1| excinuclease ABC, C subunit [Bacteroides ovatus SD CMC 3f] gi|156111116|gb|EDO12861.1| hypothetical protein BACOVA_01365 [Bacteroides ovatus ATCC 8483] gi|292636309|gb|EFF54794.1| excinuclease ABC, C subunit [Bacteroides ovatus SD CMC 3f] Length = 611 Score = 458 bits (1179), Expect = e-126, Method: Composition-based stats. Identities = 167/623 (26%), Positives = 299/623 (47%), Gaps = 47/623 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PG+YQ L+ G ++YVGKA NL+KR+ SY + + ++S+I +IR+ V Sbjct: 19 NLPEKPGIYQYLNTEGTIIYVGKAKNLKKRVYSYFSKEHEPGKTRVLVSKIADIRYIVVN 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + + P +++ R SY+GP Sbjct: 79 TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRVFRTRKIIRNGSSYYGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + ++ ++ ++ + LR+C +++ + CL + IK C+GPC G S E Sbjct: 138 YSHIPSMYAVLDLIKHLYPLRTCSLNLTPENIRAGKFNVCLEYHIKNCAGPCIGLQSQED 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y++ + E K+ L G + + M + +E A +++ + + ++ ++ + Sbjct: 198 YLKNIDEIKEILKGNTQEISRMLLERMQTLAGEMKFEEAQKVKEKYLLIENYRSKSEVVS 257 Query: 240 NRMDCFSLYHNK----NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + ++ + N A I G TF K + ++L+ + + Sbjct: 258 AVLHNIDVFSIEEDESNSAFINYLHITNGAINQAFTFEYKKKLNESKEELLTLGIIEMRE 317 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ + L I F VP++G+K+K+++ +++N + + Sbjct: 318 RYKSQSREIIVPFELDLELNNIVFT----------VPQRGDKKKLLDLSILNVKQYKADR 367 Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 L E ++K+ ++ L P +IE +DNS+I G AV VV + K Sbjct: 368 LKQAEKLNPEQRSMRLMKEIQQELHLDRPPLQIECFDNSNIQGSDAVAACVVFKKAKPSK 427 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 YRK+N+ V DD A M+ V+ RR+ + I+ PD++I Sbjct: 428 KDYRKYNIKT--VVGPDDYASMKEVVRRRYQRAIEEN--------------TPLPDLIIT 471 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ+ + V++ + I I +AK R E F + + + + P+ Sbjct: 472 DGGKGQMEVVREVIED-ELNLTIPIAGLAK-DNRHRTSELLFGFPPQTIGIKQQSPLFRL 529 Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 + +++DE HRFAI+ HR +R K S LD I GIG K LL+ F +VK I +S E Sbjct: 530 LTQIQDEVHRFAISFHRDKRSKRQVASALDNIKGIGEKTKTALLKEFKSVKRIKEASFEE 589 Query: 589 LASIEGISKKIACKIYNHFHKNT 611 ++++ I + A + Sbjct: 590 ISAV--IGEAKAKTVKEGLGNEQ 610 >gi|260172654|ref|ZP_05759066.1| excinuclease ABC subunit C [Bacteroides sp. D2] gi|315920945|ref|ZP_07917185.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694820|gb|EFS31655.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 611 Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats. Identities = 167/623 (26%), Positives = 299/623 (47%), Gaps = 47/623 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PG+YQ L+ G ++YVGKA NL+KR+ SY + + ++S+I +IR+ V Sbjct: 19 NLPEKPGIYQYLNTEGTIIYVGKAKNLKKRVYSYFSKEHEPGKTRVLVSKIADIRYIVVN 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + + P +++ R SY+GP Sbjct: 79 TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRVFRTRKIIRNGSSYYGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + ++ ++ ++ + LR+C +++ + CL + IK C+GPC G S E Sbjct: 138 YSHIPSMYAVLDLIKHLYPLRTCSLNLTPENIRAGKFNVCLEYHIKNCAGPCIGLQSQED 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y++ + E K+ L G + + M + +E A +++ + + ++ ++ + Sbjct: 198 YLKNIDEIKEILKGNTQEISRMLLERMQTLAGEMKFEEAQKVKEKYLLIENYRSKSEVVS 257 Query: 240 NRMDCFSLYHNK----NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + ++ + N A I G TF K + ++L+ + + Sbjct: 258 AVLHNIDVFSIEEDESNSAFINYLHITNGAINQAFTFEYKKKLNESKEELLTLGIIEMRE 317 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ + L I F VP++G+K+K+++ +++N + + Sbjct: 318 RYKSQSREIIVPFELDLELNNIVFT----------VPQRGDKKKLLDLSILNVKQYKADR 367 Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 L E ++K+ ++ L P +IE +DNS+I G AV VV + K Sbjct: 368 LKQAEKLNPEQRSMRLMKEIQQELHLDRPPLQIECFDNSNIQGSDAVAACVVFKKAKPSK 427 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 YRK+N+ V DD A M+ V+ RR+ + I+ PD++I Sbjct: 428 KDYRKYNIKT--VVGPDDYASMKEVVRRRYQRAIEEN--------------TPLPDLIIT 471 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ+ + V++ + I I +AK R E F + + + + P+ Sbjct: 472 DGGKGQMEVVREVIED-ELNLTIPIAGLAK-DNRHRTSELLFGFPPQTIGIKQQSPLFRL 529 Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 + +++DE HRFAI+ HR +R K S LD I GIG K LL+ F +VK I +S E Sbjct: 530 LTQIQDEVHRFAISFHRDKRSKRQVASALDNIKGIGEKTKTALLKEFKSVKRIKEASFEE 589 Query: 589 LASIEGISKKIACKIYNHFHKNT 611 ++++ I + A + Sbjct: 590 ISAV--IGEAKAKTVKEGLDNEQ 610 >gi|313901223|ref|ZP_07834711.1| excinuclease ABC, C subunit [Clostridium sp. HGF2] gi|312954181|gb|EFR35861.1| excinuclease ABC, C subunit [Clostridium sp. HGF2] Length = 592 Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats. Identities = 181/622 (29%), Positives = 290/622 (46%), Gaps = 49/622 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P PG Y M + G ++YVGKA L++R++ Y H + T ++S I++ + Sbjct: 10 KLKILPAMPGCYLMKNKDGDIIYVGKAKKLKQRVRQYFVGA-HDFKTTRLVSNIDDFEYI 68 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT +E EALLLE N+IK+ P +NI+ DDKS+PY+ +T K P L R++ + Y Sbjct: 69 VTSSEKEALLLEINLIKKHTPPYNIMFMDDKSYPYLKLT-KENAPVLKVVRNTKDRKAHY 127 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPF A +T L R + LR C R + CL + + +C PC +I Y Sbjct: 128 FGPFPDSGAAWETAKLLNRIYPLRKCR----RMPKKECLYYHMGQCLAPCIRDIDERVYA 183 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V +KF+ G + + + R M QA+ + +E A + A+ H+ + Sbjct: 184 DMVSGIQKFMRGDVREMLDTLHREMEQASEELLFEKAQEKLSLIHAIEHVTAKQQIDFKD 243 Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K IQ F G+ A F+ Q+Y + P Sbjct: 244 RKDRDVFGYYVDKGYISIQGFFLRGGKLLERTLSI--EPLYENEADAFVSFILQYYANNP 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL-- 356 P+ IL+ +E + T L EI K I P +G+K K+++ L NA +H QK Sbjct: 302 LPQEILIPKEYDITHLEEILDTK-------ILQPLRGDKLKLVDMVLANAKNAHEQKFEL 354 Query: 357 --STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 E ++ L RIE++DNSHI G V MVV + K YR Sbjct: 355 VERKESRRYEGMEQLCNL--LQKEIHRIELFDNSHISGTHNVSGMVVYRDGEPSKKDYRT 412 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F L + D M+ V+ RR+ +L+K +PD++I+DGG Sbjct: 413 FRL----GEYISDLDSMKEVIYRRYFRLLKEG--------------ARFPDLLIVDGGYL 454 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q+ AA+ +++ L++ +TI + K G L + + + + +++ Sbjct: 455 QIEAAREIIEALDI--PLTICGLVKDDNHRTSN--LMDVNGNILPVKRDSSLFFLLTQMQ 510 Query: 535 DEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAI+ HRK R K S LDE+ GIG +RK+ + + F ++K + ++ E + + Sbjct: 511 DEVHRFAISYHRKLRGKAMTKSILDEVEGIGEVRKKEIWKHFKSLKRLKEATIEEIRQV- 569 Query: 594 GISKKIACKIYNHFHKNTSHTP 615 + +K+A IYN H + Sbjct: 570 -VPEKVAQNIYNILHNTDQKSE 590 >gi|312134297|ref|YP_004001635.1| excinuclease ABC subunit C [Caldicellulosiruptor owensensis OL] gi|311774348|gb|ADQ03835.1| excinuclease ABC, C subunit [Caldicellulosiruptor owensensis OL] Length = 593 Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats. Identities = 192/612 (31%), Positives = 300/612 (49%), Gaps = 36/612 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRF 60 +P PGVY M D G V+YVGKA NL+ R++ Y +++ + M+ +I ++ + Sbjct: 6 KLSNLPTSPGVYIMKDENGNVIYVGKAVNLRNRVRQYFQNSSDMPPKTRLMVKKIKDLDY 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT E+EAL+LE N+IK +P++N+LLRDDK++ YI IT+ P L R Sbjct: 66 IVTDNEIEALILECNLIKEYRPKYNVLLRDDKNYQYIKITN-EMFPRLVTTRKVEKDGSR 124 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S +V++T+ L+ F LR+C + RPCL F I++C G C G++S E Sbjct: 125 YFGPYVSGYSVKQTVELLKSLFMLRTCKKKFPDQLGKGRPCLNFHIEKCLGVCKGDVSEE 184 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + V +A K LSG + E++ M + +E A +++L++L I I Sbjct: 185 EYQKLVSKAVKVLSGKGDEVVEELKAKMFEYAENLMFEKAQEIKNKLSSLEQIITKQKVI 244 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 Y D + + I G+ F LK D + FL Q+Y+ Sbjct: 245 YADDRSEDVINFAKDHTHIAIVVLIIRNGKLINKEEFVLKADED-----TFERFLEQYYS 299 Query: 296 D-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 D P+ I++ E +E K YG+KVK+ VPKQGEK+++++ A NA S Sbjct: 300 DVVSLPKEIIVPNTVENAENIEKMIEKLYGFKVKVIVPKQGEKKQLLDMAKKNAEISLAN 359 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + + + L L + ++IE YD S+I G VG +VV + F K YRK Sbjct: 360 RQKVDDVYAEALLTLKNILGLENEIEKIESYDISNIAGADNVGTLVVFEDGRFNKEYYRK 419 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + + QDD ++ VL RRF+ L K PD++++DGG+ Sbjct: 420 FKIKG--FEGQDDIRSIKEVLTRRFTNLEK---------------HGRIPDLILIDGGQN 462 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++A VL L I + + K + + G+ L + + I ++ Sbjct: 463 QVNAVLEVLNALGFS--IPVAGMVKDDRHKTKD---LIYNGKELAIQEYPLVFKLIYAIQ 517 Query: 535 DEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 +E HRFA+ HR+ RKK S LDEI GIG RK L + FG++ + ++S E + Sbjct: 518 EETHRFAVKFHREVRKKHLYESILDEIEGIGEKRKLKLFRVFGSIDNLRKASIEEIVKAA 577 Query: 594 GISKKIACKIYN 605 I ++A KI Sbjct: 578 EIPYEVALKIKE 589 >gi|226356064|ref|YP_002785804.1| excinuclease ABC subunit C [Deinococcus deserti VCD115] gi|226318054|gb|ACO46050.1| putative UvrABC system protein C (Excinuclease ABC, subunit C) [Deinococcus deserti VCD115] Length = 617 Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats. Identities = 167/629 (26%), Positives = 294/629 (46%), Gaps = 42/629 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PGVY G +Y+GKA NL+ R+ + + + + T + + + F Sbjct: 9 LPTTPGVYIFR-KGGTPIYIGKANNLRSRVGQHFKAGGKSGKFTAL---ADTLEFITARN 64 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 EVEAL+LEAN+IK+ +P +N+ L+DDK +P++ +T+ P L R GSY+GP+ Sbjct: 65 EVEALVLEANLIKQHRPHYNVTLKDDKHYPFLKLTN-ETYPMLVVTRRVLKDGGSYYGPY 123 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 AV + + + F LR + + + RPCL + + RC GPC + Y V Sbjct: 124 PDSSAVRRVKHLIDTMFPLRKNSGLPLQKKARPCLNYHMGRCLGPCIDAAPVDDYRRVVE 183 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH----IQNHNDSIYNR 241 + K L G + ++ +M A L D+E A RDR+ A+ Q+ S Sbjct: 184 DVKSLLEGRAAPVIARLKEDMKAAALARDFEQAGRLRDRVQAVEKLFGTEQHAFVSDETD 243 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-CP 300 +D A +Q G+ G FL +S +I+ F++ +YT P Sbjct: 244 LDFLGAAQAGEYAMVQLFRMRGGRVVGRDKRFLTGTEDSPLGEIVEAFVQDYYTQATHVP 303 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH--RSHTQKLST 358 ILL + ++T + ++ G ++++ PK+G+K ++E A NA+ L Sbjct: 304 PLILLPADFDDTPIWSAFLSEKAGRRIEMRTPKRGDKVDLVEMAQRNANTGLESELALLE 363 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 L + ALP P RIE YDNS++ G + V MVV + ++R+F + Sbjct: 364 RRGDHPGLDALREALALPDRPWRIEGYDNSNLFGTNIVSGMVVFEGGRARRGEHRRFKVR 423 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + DD M+ + RRF+ + ++ PD++++DGG+GQ++A Sbjct: 424 G--LDHPDDYTSMKQTISRRFTGSLADK--------------LPLPDLILIDGGRGQVNA 467 Query: 479 AQGVLKKLNVENRITIISIAKGPKR-----SAGMEKFFVKK-----GEALVLNMRDPILY 528 A L++ + ++ ++ +AK +R G + + L+L P L Sbjct: 468 ALDALREAGI--QVPVVGLAKREERLILPGRYGAQWWLENGTEIGVDRELLLPQTHPALR 525 Query: 529 FIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 + +RDE H +A+T HRK R + S D++ GIG R+ LL+ F +++ ++ + E Sbjct: 526 MLIGVRDEVHNYAVTYHRKLRGQDMLRSVFDDLPGIGQKRRDALLEHFTSLEDLAAAPVE 585 Query: 588 TLASIEGISKKIACKIYNHF-HKNTSHTP 615 +A++ G++ + A + + + P Sbjct: 586 QIAAVPGMTTRAAQSVKTFLAQRAANQAP 614 >gi|241668632|ref|ZP_04756210.1| excinuclease ABC subunit C [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877165|ref|ZP_05249875.1| UvrABC system protein C [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843186|gb|EET21600.1| UvrABC system protein C [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 612 Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats. Identities = 184/615 (29%), Positives = 315/615 (51%), Gaps = 30/615 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + GVY+MLD G ++YVGKA NL+ R+ SY + M+ Q+ I T+T Sbjct: 17 NLTTHSGVYRMLDKHGEIIYVGKAKNLKNRVNSYFSKGAKDSKTLMMVEQVARIEITITP 76 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSYFG 123 ++ EA LLE N+IK+ +P++NIL +DDKS+PY++I+ + K P + +R S +G FG Sbjct: 77 SDYEAYLLENNLIKQHRPKYNILFKDDKSYPYLVIS-RDKFPRVSFYRGKSAYKKGQCFG 135 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ S+ +V+ T+N +Q+ F +R C +S ++ R RPCL +QIK C PC G +S E+Y E Sbjct: 136 PYVSISSVKNTLNIIQKIFPIRQCENSYYKSRVRPCLQYQIKCCLAPCVGLVSQEQYDEQ 195 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR-- 241 + KKFL+G ++ E+I+ M QA+ +YE A ++RD+L L +Q Sbjct: 196 LAILKKFLAGKFSSVLEEISAKMYQASEDMEYEKAQVYRDQLVILRKLQQQQIVDIQEDK 255 Query: 242 -MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D +Y + A I G + + I+ FL FY Sbjct: 256 TFDVIGIYMQDSYASIALLQIQNGDVVADRHWSID-AKGQDKTSIMHAFLSHFYLGDEIR 314 Query: 301 ---ENILLSEEAEETSLLEISF--FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ + E + ++ ++ G + V + K ++ A +NA + Sbjct: 315 NIWPKNIILSKVEFADITDLMNSISQKIGQAINWIVAPAADNLKWLKLAEVNARQKLNIY 374 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 S++ +Q L+ + L KRIE +D SH G + + VV + G + +R++ Sbjct: 375 TSSKSQYQKRLEALKEFLELEKDIKRIECFDISHFQGEATIASCVVYTDEGEDRKSHRRY 434 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ +K DD A + + RR S ++ + PDV+I+DGGKGQ Sbjct: 435 NIKD--IKAGDDYAAIHQAVSRRVSSGLEADN---------------LPDVMIIDGGKGQ 477 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLR 534 + A+ V ++ +++++ ++S+ KG +R +G EK + L+ +P ++++R Sbjct: 478 IHQAEAVFREFGIQDKVQLVSLGKGVERISGKEKIYKGFDDTEYTLDEHNPGFLLLRQVR 537 Query: 535 DEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 D AH AI RK+ S ++EI G+GP R++ L+ FG + +SR+S + + ++ Sbjct: 538 DSAHDHAIKGQRKKVSANRQSSIIEEIEGVGPKRRKALIMYFGGWQELSRASVDEITKVK 597 Query: 594 GISKKIACKIYNHFH 608 GISKK+A +I+ FH Sbjct: 598 GISKKLAQEIWECFH 612 >gi|169350170|ref|ZP_02867108.1| hypothetical protein CLOSPI_00914 [Clostridium spiroforme DSM 1552] gi|169292953|gb|EDS75086.1| hypothetical protein CLOSPI_00914 [Clostridium spiroforme DSM 1552] Length = 588 Score = 458 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 183/614 (29%), Positives = 297/614 (48%), Gaps = 46/614 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D G V+YVGKA L+ R+ SY H ++ T ++ +I + + VT + Sbjct: 13 LPLLPGCYLMKDKNGDVIYVGKAKKLKNRVSSYFVGA-HNYKTTKLVHEIVDFDYIVTDS 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLE N+IK P++NI D+K +PYI +T K + P L R++ + +FGPF Sbjct: 72 EKEALLLEINLIKDYSPKYNISFMDNKYYPYIQLT-KERHPRLKIVRNAQDKKHRHFGPF 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 A +T L R + LR C +PCL + + +C PC ++ E Y + Sbjct: 131 PDGTAARETFKLLNRLYPLRKCNHIP----KKPCLYYSLNQCLAPCIQTVNEETYKQITS 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 KF+ G + ++ M A+ ++YE A RD ++ + H+ + +N Sbjct: 187 NITKFIQGDTKQIINELQEKMYNASEVQNYELAKECRDLISHIQHVTSKQHVQFNDLVDR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D YH+K C+Q F G+ + + + + FL FY + P+ Sbjct: 247 DIVGYYHDKGYLCLQLFFMRNGKLLARDLNLVPM--QDDFQEQIISFLVLFYQENTEPKE 304 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR----SHTQKLST 358 +L+ +E + + L EI K P++G K ++ A NA Sbjct: 305 LLVPKELDVSLLQEIIKCKIIK-------PQKGNKANLVAMANENAKEQLEKKFLLIQKN 357 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E S +K + RIE++DNS+I G AV MV + K YRKF + Sbjct: 358 EASTIGAIKQLGSLLNIDLPR-RIELFDNSNIQGSYAVAGMVCFKDGLPSKKDYRKFKIK 416 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD A M+ V+ RR+ +++ PD++I+DGGKGQ+ Sbjct: 417 T--VEGPDDYASMKEVIYRRYYRVLMEN--------------LERPDLIIVDGGKGQIKV 460 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ V+ LN+ I + +AK K S M +G + ++ + + + + R++DE H Sbjct: 461 AKEVIDSLNL--NIMVCGLAKDDKHSTSM--LLDSEGNEVAIDKKSELFFLLVRMQDEVH 516 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 R+AI+ H+ R K+ + S LD + GIGP RK+LLL+ FG+VK + +S E L + + K Sbjct: 517 RYAISFHKNVRSKSLFQSILDNVEGIGPKRKKLLLKEFGSVKQLKEASLEQLEKV--LPK 574 Query: 598 KIACKIYNHFHKNT 611 ++A ++N K+T Sbjct: 575 EVAANLFNVLKKDT 588 >gi|89256741|ref|YP_514103.1| excinuclease ABC subunit C [Francisella tularensis subsp. holarctica LVS] gi|167009820|ref|ZP_02274751.1| DNA excision repair enzyme, subunit C (UvrABC system protein A) [Francisella tularensis subsp. holarctica FSC200] gi|254368040|ref|ZP_04984060.1| DNA excision repair enzyme, subunit C (uvrABC system protein C) [Francisella tularensis subsp. holarctica 257] gi|119367651|sp|Q2A2E9|UVRC_FRATH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|89144572|emb|CAJ79887.1| DNA excision repair enzyme, subunit C (UvrABC system protein A) [Francisella tularensis subsp. holarctica LVS] gi|134253850|gb|EBA52944.1| DNA excision repair enzyme, subunit C (uvrABC system protein C) [Francisella tularensis subsp. holarctica 257] Length = 612 Score = 458 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 186/615 (30%), Positives = 320/615 (52%), Gaps = 30/615 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + GVY+MLD G ++YVGKA NL+ RI SY + M+ QI I T+T Sbjct: 17 NLTTHSGVYRMLDKHGEIIYVGKAKNLKNRINSYFSKGAKDSKTLMMVEQIARIEITITP 76 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSYFG 123 ++ EA LLE N+IK+ +P++NIL +DDKS+PY++I+ + K P + +R S +G FG Sbjct: 77 SDYEAYLLENNLIKQHRPKYNILFKDDKSYPYLVIS-RDKFPRVSFYRGKSAYKKGQCFG 135 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ S+ +V+ T+N++Q+ F +R C +S ++ R RPCL +QIKRC PC G +S ++Y E Sbjct: 136 PYVSISSVKNTLNTIQKIFPIRQCENSYYKSRVRPCLQYQIKRCLAPCVGLVSQQQYDEQ 195 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR-- 241 + KKFL+G ++ E+I+ NM QA+ +YE A ++RD+L L +Q Sbjct: 196 LAILKKFLAGKFSSVLEEISANMYQASEDMEYEKAQVYRDQLVVLRKLQQQQIVDIQEDK 255 Query: 242 -MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D +Y + A I G + + I+ FL FY Sbjct: 256 TFDVIGIYMQDSYASIALLQIQNGDVVADRHWSID-AKGQDKTSIMHAFLSHFYLGDEIR 314 Query: 301 ---ENILLSEEAEETSLLEISF--FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ + E + ++ ++ G + + + K ++ A +NA + Sbjct: 315 NIWPKNIILSKVEFADITDLMNSISQKIGQAINWIIAPAADNLKWLKLAEVNARQKLNIY 374 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 S++ +Q L+ + KRIE +D SH G + + VV ++G + +R++ Sbjct: 375 TSSKSQYQKRLESLKEFLESEKDIKRIECFDISHFQGEATIASCVVYTDDGEDRKSHRRY 434 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ +K+ DD A + + RR S ++ + PDV+I+DGGKGQ Sbjct: 435 NIKD--IKSGDDYAAIHQAVSRRVSSGLEADN---------------LPDVMIIDGGKGQ 477 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLR 534 + A+ V ++ +++++ ++S+ KG +R +G EK + L+ +P ++++R Sbjct: 478 IHQAEAVFREYGIQDKVQLVSLGKGVERISGKEKIYKGFDDTEYTLDEHNPGFLLLRQVR 537 Query: 535 DEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 D AH AI RK+ S ++EI G+GP R++ L+ FG + +SR+S + +A ++ Sbjct: 538 DSAHDHAIKGQRKKVSANRQSSIIEEIEGVGPKRRKALMMYFGGWQELSRASVDEIAKVK 597 Query: 594 GISKKIACKIYNHFH 608 GISKK+A +I+ FH Sbjct: 598 GISKKLAQEIWECFH 612 >gi|260583729|ref|ZP_05851477.1| excinuclease ABC subunit C [Granulicatella elegans ATCC 700633] gi|260158355|gb|EEW93423.1| excinuclease ABC subunit C [Granulicatella elegans ATCC 700633] Length = 590 Score = 458 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 169/611 (27%), Positives = 301/611 (49%), Gaps = 41/611 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 +Q+P+ PG Y M + ++Y+GKA NL+ R++SY ++T + ++S+I++ F Sbjct: 9 KLKQLPDLPGCYLMKNQEDDIIYIGKAKNLKNRVRSYFRGAHNT-KTEKLVSEIHHFEFI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT T E+LLLE N+IK+ +P +NI L+ +PY+ IT+ K P L + G Y Sbjct: 68 VTKTNKESLLLEINLIKKYQPYYNIKLKQGTMYPYLKITN-EKDPQLIITSNVEKDGGMY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A +T +Q+ + LR C ++ TR C + + +C G C E+S E Y Sbjct: 127 FGPYPNVYAATETQQLIQKIYPLRKCG----KNETRACFYYHLGQCIGCCDHEVSPEIYQ 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 + + ++FL G +K+ + + M++A+ + ++E AI +R+++ + + Sbjct: 183 QQKKKIQRFLEGDVKEIKQDLQKKMDEASEQLEFERAIDYRNQIQYIETTVEKQHIMSQD 242 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 + D FS Y ++ IQ + + I + Sbjct: 243 FTNRDVFSFYMDRGWISIQVFLLRQSTIIKREAALFPIYNSAEEELISFIVQFYQEQNHI 302 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ IL+ E ++ L E+ K P++G K+++++ A N+ Sbjct: 303 LPKEILVPAEIDKELLAEVLEVKVLT-------PQRGPKKRMLDLATQNSEVALLEKFKI 355 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +++ ++ + L + IE +D+S+I G + V MVV + K YRK Sbjct: 356 DENSQQKTLGAVEQLRQALDLSRLS-VIESFDHSNIQGTNPVSAMVVYRDGKPEKKSYRK 414 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 FN+ V+ + + V+ RR+S+L+K ++ L PD++++DGGK Sbjct: 415 FNIKT--VQGSHEFLTTQEVVRRRYSRLLKEQKPL--------------PDLILMDGGKV 458 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q+ AA VL+ + I I + K K + ++ E + L+ + +QR++ Sbjct: 459 QMRAAMEVLED-ELGLSIPIAGMVKDEKHKTAH-LLYGEEYEQIELDPTSQAFHLLQRIQ 516 Query: 535 DEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 +E HR+AIT HR+ R K A+ S LDEI G+GP + LLQ F T+K I ++ E + + Sbjct: 517 EEVHRYAITFHRQVRSKNAFSSILDEIEGVGPKTRTKLLQHFKTMKGIQEATVEEIQKL- 575 Query: 594 GISKKIACKIY 604 GIS+K+A +I Sbjct: 576 GISEKVARRIK 586 >gi|218961104|ref|YP_001740879.1| Excinuclease ABC, C subunit [Candidatus Cloacamonas acidaminovorans] gi|167729761|emb|CAO80673.1| Excinuclease ABC, C subunit [Candidatus Cloacamonas acidaminovorans] Length = 601 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 190/613 (30%), Positives = 309/613 (50%), Gaps = 38/613 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PGVY D G ++Y+GKA NL+ RIK+Y++ + H+I I ++ + +T + Sbjct: 15 LPEQPGVYLWKDKDGTIIYIGKALNLKHRIKNYLNPAGKDLKTEHLIKNIADLDYIITNS 74 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E +A +LEA ++KR +P++NI+L+DDK +P++ IT P ++ R+ YFGP+ Sbjct: 75 EADAFILEATLVKRYRPKYNIMLKDDKRYPFVKITVNEPFPRIFITRELLKDNAKYFGPY 134 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTR-PCLLFQIKRCSGPCTGEISSEKYMEFV 184 V + T+ L+ F LRSC ++ + + + PC+ FQ+ +C PC G IS + Y + V Sbjct: 135 TEVRYLRNTLRDLEWIFPLRSCNRNIPKIKYKQPCMNFQLGKCPAPCIGNISQKNYAKTV 194 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NR 241 ++ +F +G L +++ M A+ + +E A RDR+ A+ IQ Sbjct: 195 NQLLRFFNGRYTELLDELRTEMQNASAELRFEEAGKFRDRIIAIERIQKRQSVFNVEGGN 254 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK-PCP 300 +D Y + A G + L IL+ FL+ +Y D+ P Sbjct: 255 IDIIGFYREEKRAVCVILKMKNGAIIHQENYPLTNLDYEEPDSILASFLQLYYADREEMP 314 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKL 356 E +LL ++ K+ +P++GEK K+I A NA S L Sbjct: 315 EEVLLPFAPKDMD------KLNSWLGNKLQIPQRGEKTKLIAMAKTNAFNIVEESKLAHL 368 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 +++ + LP +P++I D S I G V V K YR F Sbjct: 369 RKANRTIFPVQELKEALKLPKLPRKIVCMDISTIQGSDTVSSAVFFENGKSKKKYYRHFI 428 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + ++TQ+D A M+ + R ++ K + PD++++DGGKGQL Sbjct: 429 IRS--IETQNDYAAMQETMARFLTETEKEPQ--------------MKPDLIVIDGGKGQL 472 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 SA++ +L+ +N I+II++AK + E F ++++L L + +RDE Sbjct: 473 SASEQILRASG-KNDISIIALAKRAE-----EVFVPGNEQSIILPRSSSALRLLINIRDE 526 Query: 537 AHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 AHRFA++ HRKRR + S L+ I+GIG K LLL+ G+V+ I+ ++ ETL+ I+GI Sbjct: 527 AHRFALSLHRKRRSRRTLESELESISGIGEKNKFLLLKELGSVENIANANRETLSKIKGI 586 Query: 596 SKKIACKIYNHFH 608 KIA KIYNHFH Sbjct: 587 GPKIAEKIYNHFH 599 >gi|15604426|ref|NP_220944.1| excinuclease ABC subunit C [Rickettsia prowazekii str. Madrid E] gi|8134802|sp|Q9ZCX9|UVRC_RICPR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|3861120|emb|CAA15020.1| EXCINUCLEASE ABC SUBUNIT C (uvrC) [Rickettsia prowazekii] gi|292572194|gb|ADE30109.1| Excinuclease ABC subunit C [Rickettsia prowazekii Rp22] Length = 626 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 237/621 (38%), Positives = 351/621 (56%), Gaps = 32/621 (5%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 PEC GVY+MLD+ +V+Y+GKA L+KR+ +Y ++ ++ MIS + + +T +E Sbjct: 19 PECSGVYKMLDVNKQVIYIGKAKILKKRLTNY-IKSDLDNKTLRMISNTYFLEYIITNSE 77 Query: 67 VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126 VEALLLEA +IK+ +P+FNILL+DDKSFP+I ++ H P L K+R + G +FGPFA Sbjct: 78 VEALLLEAQLIKKFQPKFNILLKDDKSFPFIKLSLDHDFPQLIKYRGKALSDGKFFGPFA 137 Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186 S V T+ LQ+ F LRSC D+ F RTRPCL ++IKRC PC G+I+ E Y E V + Sbjct: 138 SNTQVNTTLTELQKIFKLRSCTDNYFNSRTRPCLQYEIKRCYAPCVGKINKEDYRELVMQ 197 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYNRMDC 244 K FL L+ +++ M + + + +E A RDR+ ALS++Q + + D Sbjct: 198 VKDFLQCRTIALQANLSKKMQELSSQMRFEEAAEIRDRIKALSYVQLKSGILDVVRDADI 257 Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304 ++ H CI+ + GQ G +F + ST+ ++L YFL QFY + P I+ Sbjct: 258 IAIVHKNLHYCIEVSLYRAGQPYGAIPYFFSSTENSTHEEVLEYFLLQFYQKQQVPSEII 317 Query: 305 LSEEAEETSLLEISFFK-QYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 ++ E + + K + ITVP +G K K++++A +NA S Q L I + Sbjct: 318 MNHEINSKENMIEAIKKINNISDLSITVPHKGGKAKLVQKAEVNALLSLEQYLKKSIKNT 377 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV- 422 I+ K F LP IP+RIEIYDNSH+ G AVG MVV G+ GF K +YR F+L + Sbjct: 378 DIMFALKKLFDLPEIPERIEIYDNSHLQGMFAVGVMVVAGQIGFDKKEYRVFSLSSRSLT 437 Query: 423 ----------KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472 + DD M+R VL RRF++L P ++I+DGG Sbjct: 438 IGSEIELRDDRKGDDYGMLRQVLTRRFTRLKNE--------------PHKLPSLMIIDGG 483 Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532 KG L+ + V+ K + I + ++KG R+AG+E+ ++ E L L+ PI+ ++Q Sbjct: 484 KGHLTIVKEVMDKFEI--NIPFVCMSKGRDRNAGLEQLHMQGKEVLTLDKNLPIMKYLQI 541 Query: 533 LRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 LRDEAH FAI HR R +A S LDEI+GIG RK LL FG+ K + ++ + L Sbjct: 542 LRDEAHNFAIKNHRLGRSRAIKISSLDEIDGIGETRKTALLHYFGSYKAVCNATIDELTK 601 Query: 592 IEGISKKIACKIYNHFHKNTS 612 ++GISK +A I+N ++ S Sbjct: 602 VKGISKSLASMIFNILNRKIS 622 >gi|298484264|ref|ZP_07002428.1| excinuclease ABC subunit C [Bacteroides sp. D22] gi|298269589|gb|EFI11186.1| excinuclease ABC subunit C [Bacteroides sp. D22] Length = 620 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 170/624 (27%), Positives = 301/624 (48%), Gaps = 47/624 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PG+YQ L+ G ++YVGKA NL+KR+ SY + + ++S+I +IR+ V Sbjct: 21 NLPEKPGIYQYLNTEGTIIYVGKAKNLKKRVYSYFSKEHEPGKTRVLVSKIADIRYIVVN 80 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + + P ++K R SY+GP Sbjct: 81 TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRIFKTRKVIRNGSSYYGP 139 Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + ++ ++ ++ + LR+C +++ + CL + IK C+GPC G S E+ Sbjct: 140 YSHIPSMYAVLDLIKHLYPLRTCNLNLSPENIRAGKFNVCLEYHIKNCAGPCIGLQSQEE 199 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y++ + E K+ L G ++ + M + +E A +++ + ++ ++ + Sbjct: 200 YLKNIDEIKEILKGNTQDISRMLLEKMQTLAAEMKFEEAQKVKEKYLLIESYRSKSEVVS 259 Query: 240 NRMDCFSLYHNK----NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + ++ + N A I G TF K + ++L+ + + Sbjct: 260 AVLHNIDVFSIEEDESNSAFINYLHITNGAINQAFTFEYKKKLNESKEELLTLGIIEMRE 319 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ + L V TVP++G+K+K+++ +++N + + Sbjct: 320 RYKSQSREIIVPFELDLELN----------NVVFTVPQRGDKKKLLDLSVLNVKQYKADR 369 Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 L E ++K+ ++ L P +IE +DNS+I G AV VV + K Sbjct: 370 LKQAEKLNPEQRSMRLMKEIQQELHLERPPLQIECFDNSNIQGSDAVAACVVFKKAKPSK 429 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 YRK+N+ V DD A M+ V+ RR+ + I+ PD++I Sbjct: 430 KDYRKYNIKT--VVGPDDYASMKEVVRRRYQRAIEEN--------------SPLPDLIIT 473 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ+ + V++ + I I +AK R E F + + + + P+ Sbjct: 474 DGGKGQMEVVREVIED-ELNLAIPIAGLAK-DNRHRTSELLFGFPPQTIGIKQQSPLFRL 531 Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 + +++DE HRFAI+ HR +R K S LD I GIG K LL+ F +VK I +S E Sbjct: 532 LTQIQDEVHRFAISFHRDKRSKRQVASALDTIKGIGEKTKTALLKEFKSVKRIKEASFEE 591 Query: 589 LASIEGISKKIACKIYNHFHKNTS 612 + +I I + A + +S Sbjct: 592 IVAI--IGEAKAKTVKEGLSNESS 613 >gi|15672822|ref|NP_266996.1| excinuclease ABC subunit C [Lactococcus lactis subsp. lactis Il1403] gi|13878835|sp|Q9CH98|UVRC_LACLA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|12723766|gb|AAK04938.1|AE006318_1 excinuclease ABC subunit C [Lactococcus lactis subsp. lactis Il1403] Length = 668 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 174/664 (26%), Positives = 294/664 (44%), Gaps = 85/664 (12%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D G V+YVGKA NL+ R++SY H +++T + ++S+I ++ + Sbjct: 8 KLELLPDSPGCYLHKDKNGTVIYVGKAKNLKNRVRSYFHGSHNT-KTELLVSEIEDLEWI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V + +E+L+LE N+I+R KP++NI+L+DDK +P++ IT+ K P L R +Y Sbjct: 67 VVGSNIESLVLEINLIQRYKPKYNIMLKDDKYYPFLKITN-EKYPRLLVVRKVQKDGATY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C H + C F I +C P + + + Sbjct: 126 FGPYPDVKAANEVKRLLDRIFPFRKCGL----HEKKVCFYFHIHQCLCPVVNHVDPQVFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 + E K+FL+G + + ++ M ++ ++E A +RD + A+ ++ + Sbjct: 182 DMTQEVKEFLTGSDKKIVNELEAKMMVSSDNMEFEQAAEYRDVIKAIGTLRTKQRVMNQD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ +++ + + Sbjct: 242 LKDRDVFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDAEEDFLTYIGQFYQDNNHM 301 Query: 299 CPENILLSEEAE------------------------------------------------ 310 P I + ++ + Sbjct: 302 MPREIFIPQDIDKESVEAVVAASQEGNLLTKAQAKEVDAKVFTAKTLKFSDQKDVEQSIV 361 Query: 311 --ETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLSTEISHQM 364 + L K +I P +GEK++++ A NA + Sbjct: 362 KLDKELSAEKRLSSLLAKTQIVQPSRGEKKQLVNMATKNAQSQLQLKFDVAERDILKTTK 421 Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424 +++ K +P RIE +DNS+IMG S V MVV + K YRK+ + V Sbjct: 422 AVENLGKILGIPKPV-RIESFDNSNIMGTSPVSAMVVFIDGKPSKKDYRKYKIKT--VVG 478 Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484 DD A MR V+ RR+S+ +K E L PD++ +DGG GQ++ + VLK Sbjct: 479 ADDYASMREVMTRRYSRALKEETAL--------------PDLIAMDGGAGQVNITKQVLK 524 Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544 +L + I + + K K E F + + L+ + + + R++DE HRFAIT Sbjct: 525 ELGLS--IPVAGMQKNDKHQTS-ELLFGDPLDVVPLSRQSQEFFLLTRIQDEVHRFAITF 581 Query: 545 HRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 HR+ R K +S LD I G+GP RK+ LL +F +K I +S + +A + I ++A ++ Sbjct: 582 HRQLRGKNTFSSKLDGIVGLGPKRKQKLLTTFKNLKAIEEASVQEVAEAD-IPYEVAERV 640 Query: 604 YNHF 607 Sbjct: 641 KTTL 644 >gi|227485077|ref|ZP_03915393.1| excision endonuclease subunit UvrC [Anaerococcus lactolyticus ATCC 51172] gi|227236910|gb|EEI86925.1| excision endonuclease subunit UvrC [Anaerococcus lactolyticus ATCC 51172] Length = 620 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 188/610 (30%), Positives = 304/610 (49%), Gaps = 26/610 (4%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVTCTEVEA 69 GVY M + G ++YVGKA +L+ R++ Y ++ N ++ M+S I + + + EVEA Sbjct: 22 GVYIMRNADGEIIYVGKAISLKNRVRQYFDNNKNKGAKVLAMVSHIADFEYIIVQNEVEA 81 Query: 70 LLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVD 129 L+LE+N+IK+ +P++NI+LRDDK +PYI I +K K P + K R + YFGP+ Sbjct: 82 LVLESNLIKKNRPKYNIVLRDDKQYPYIKI-NKEKFPRIQKVRQVNKDGADYFGPYPDAY 140 Query: 130 AVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 AV I+ + R+C + R + RPCL + IK+C GPC GE Y+ + + Sbjct: 141 AVNDAIDLFHDYYPFRTCNLNFDRGQSLDRPCLNYFIKKCKGPCIGEEDESTYLSKMDDV 200 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMDC 244 ++FL + + +K+ MN+ + K ++E A +RD ALS + + + +D Sbjct: 201 RQFLDKKDRKISDKVLERMNEESAKLNFEMAAKYRDYYRALSILSERQNVTETTGDDVDI 260 Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-KPCPENI 303 ++ ++ +Q F G + +K + A I+S F++QFY D P+ I Sbjct: 261 IAISKGVSIIVVQVFFMRKGHIVDREHYIIKNEFAEEEADIISSFIKQFYLDLIFIPKEI 320 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR----SHTQKLSTE 359 L+ + + ++ G KVKI PK G+K ++I A NA + E Sbjct: 321 LVQTLPSDLESITDFLNQKKGSKVKIHQPKLGKKFELITMAARNAEDMRIKHEKRIDRKE 380 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + L + + RIE YD S+ G +VG MVV +YRKF + Sbjct: 381 RNKSSGLNQLKEILNVD-KINRIEAYDISNTSGVQSVGSMVVFENGISAPKEYRKFKIKT 439 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 V+ DD A +R VL RRF+ K F PD++++DGG+GQ+S A Sbjct: 440 --VEGPDDYASLREVLIRRFTNAKKE-----IAKGSTHTGFGKLPDLILMDGGRGQVSIA 492 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 + V K++N++ I + + K K + + E + + +DP+ I +++EAHR Sbjct: 493 KEVFKEMNID--IEVAGLVKDDKHTTRG---IIYNNEEIQIRRKDPVYKLIYEIQEEAHR 547 Query: 540 FAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAI HR RK S LD+I G+G K L + F T+ I ++S E L + + K+ Sbjct: 548 FAINYHRSLMRKSMKKSELDDIKGVGKKTKANLYKHFKTISNIKKASIEELMEVPLVGKE 607 Query: 599 IACKIYNHFH 608 A +IY F Sbjct: 608 AAVEIYKFFR 617 >gi|301063360|ref|ZP_07203899.1| excinuclease ABC, C subunit [delta proteobacterium NaphS2] gi|300442523|gb|EFK06749.1| excinuclease ABC, C subunit [delta proteobacterium NaphS2] Length = 630 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 195/616 (31%), Positives = 304/616 (49%), Gaps = 36/616 (5%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTV 62 + +P PGVY L RV+YVGKA +L KR+ SY S NH+ + M+ + F + Sbjct: 17 KVLPHSPGVYLFLGPQNRVIYVGKAKDLSKRVLSYFRSANHSETKTARMLKMAKGLEFIL 76 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EA +LE +++K+ KPR+NI+LRDDK +P + + + P L R YF Sbjct: 77 TLTEKEAFILENDLVKKFKPRYNIILRDDKQYPCLRLDIREPYPHLGIVRKIKKDGALYF 136 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF+S +AV T + R F LR C + R RPC+ FQ+ RC PC+ +S+E Y E Sbjct: 137 GPFSSANAVRSTTRIISRVFKLRKCKNRKLLQRARPCINFQMDRCLAPCSRPVSTETYRE 196 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IY 239 V + + FL G N L + + M++A D+E A RDR++A+ Sbjct: 197 MVEQVRLFLEGRNTELVAALKKEMSEAATHLDFERAADIRDRISAIEKTVERQHVVSRRM 256 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK-P 298 D + +L + F G GT F + DS + ++++ FL+Q+Y+ + Sbjct: 257 MDQDIIGIAEKGDLRQLAVMFVRQGHLLGTRHFLFE-DSNAALSEVMEAFLKQYYSGQVF 315 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P ILLSE EE+ L + KV I P++GEK+K+++ A+ NA Sbjct: 316 IPGTILLSEPVEESESLGEWISEMAEKKVTIHSPRRGEKKKLVQIAVANAGNLLAGHQV- 374 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + +L+ L IP+ IE D S++ G +AVG +V + + N Sbjct: 375 -ARKEALLESTRSLLHLKKIPRTIEGLDISNLQGANAVGVVVAFKDGVPD--KRSYLNYR 431 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V DD MM V+ RR + P PD+ ++DGGKG L+A Sbjct: 432 IKHVDGIDDYGMMSEVVARRL-------------------AGPPLPDLFLVDGGKGHLAA 472 Query: 479 AQGVLK-KLNVENRIT---IISIAKGPK--RSAGMEKFFVKKGEALVLNMRDPILYFIQR 532 + VL K+ +++ IT ++S+AK + + + + L P+L+ + R Sbjct: 473 VKKVLDQKIEIDSGITVPDVVSLAKPDAFLGEVNDKVYVPGRKNPVRLAADHPVLFLMMR 532 Query: 533 LRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDEAHR A+T H+K R + S LD I G+G RK+ LL+ F + I+++ E L + Sbjct: 533 VRDEAHRRAVTYHQKLRSRNLTRSILDGIPGVGEKRKQALLRQFKGIDRIAKAELEELCA 592 Query: 592 IEGISKKIACKIYNHF 607 + GI++ +A KI Sbjct: 593 VPGINRNLALKIMEGL 608 >gi|56707888|ref|YP_169784.1| excinuclease ABC subunit C [Francisella tularensis subsp. tularensis SCHU S4] gi|110670359|ref|YP_666916.1| excinuclease ABC subunit C [Francisella tularensis subsp. tularensis FSC198] gi|224456968|ref|ZP_03665441.1| excinuclease ABC subunit C [Francisella tularensis subsp. tularensis MA00-2987] gi|254370382|ref|ZP_04986387.1| DNA excision repair enzyme [Francisella tularensis subsp. tularensis FSC033] gi|254874701|ref|ZP_05247411.1| uvrABC system protein C [Francisella tularensis subsp. tularensis MA00-2987] gi|81597646|sp|Q5NGQ8|UVRC_FRATT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|119367650|sp|Q14I60|UVRC_FRAT1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|56604380|emb|CAG45410.1| DNA excision repair enzyme, subunit C (UvrABC system protein A) [Francisella tularensis subsp. tularensis SCHU S4] gi|110320692|emb|CAL08793.1| DNA excision repair enzyme, subunit C (UvrABC system protein A) [Francisella tularensis subsp. tularensis FSC198] gi|151568625|gb|EDN34279.1| DNA excision repair enzyme [Francisella tularensis subsp. tularensis FSC033] gi|254840700|gb|EET19136.1| uvrABC system protein C [Francisella tularensis subsp. tularensis MA00-2987] gi|282159072|gb|ADA78463.1| DNA excision repair enzyme, subunit C (UvrABC system protein A) [Francisella tularensis subsp. tularensis NE061598] Length = 612 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 184/615 (29%), Positives = 319/615 (51%), Gaps = 30/615 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + GVY+MLD G ++YVGKA NL+ R+ SY + M+ QI I T+T Sbjct: 17 NLTTHSGVYRMLDKHGEIIYVGKAKNLKNRVNSYFSKGAKDSKTLMMVEQIARIEITITP 76 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSYFG 123 ++ EA LLE N+IK+ +P++NIL +DDKS+PY++I+ + K P + +R S +G FG Sbjct: 77 SDYEAYLLENNLIKQHRPKYNILFKDDKSYPYLVIS-RDKFPRVSFYRSKSAYKKGQCFG 135 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ S+ +V+ T+N++Q+ F +R C +S ++ R RPCL +QIK C PC G +S ++Y E Sbjct: 136 PYVSISSVKNTLNTIQKIFPIRQCENSYYKSRVRPCLQYQIKCCLAPCVGLVSQQQYDEQ 195 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR-- 241 + KKFL+G ++ E+I+ M QA+ +YE A ++RD+L L +Q Sbjct: 196 LAILKKFLAGKFSSVLEEISAKMYQASEDMEYEKAQVYRDQLVVLRKLQQQQIVDIQEDK 255 Query: 242 -MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D +Y + A I G + + I+ FL FY Sbjct: 256 TFDVIGIYMQDSYASIALLQIQNGDVVADRHWSID-AKGQDKTSIMHAFLSHFYLGDEIR 314 Query: 301 ---ENILLSEEAEETSLLEISF--FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ + E + ++ ++ G + + + K ++ A +NA + Sbjct: 315 NIWPKNIILSKVEFADITDLMNSISQKIGQAINWIIAPAADNLKWLKLAEVNARQKLNIY 374 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 S++ +Q L+ + L KRIE +D SH G + + VV ++G + +R++ Sbjct: 375 TSSKSQYQKRLESLKEFLELEKDIKRIECFDISHFQGEATIASCVVYTDDGEDRKSHRRY 434 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ +K+ DD A + + RR S ++ + PDV+I+DGGKGQ Sbjct: 435 NIKD--IKSGDDYAAIHQAVSRRVSSGLEADN---------------LPDVMIIDGGKGQ 477 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLR 534 + A+ V ++ +++++ ++S+ KG +R +G EK + L+ +P ++++R Sbjct: 478 IHQAEAVFREYGIQDKVQLVSLGKGIERISGKEKIYKGFDDTEYTLDEHNPGFLLLRQVR 537 Query: 535 DEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 D AH AI RK+ S ++EI G+GP R++ L+ FG + +SR+S + +A ++ Sbjct: 538 DSAHDHAIKGQRKKVSANRQSSIIEEIEGVGPKRRKALMMYFGGWQELSRASVDEIAKVK 597 Query: 594 GISKKIACKIYNHFH 608 GISKK+A +I+ FH Sbjct: 598 GISKKLAQEIWECFH 612 >gi|326406386|gb|ADZ63457.1| excinuclease ABC subunit C [Lactococcus lactis subsp. lactis CV56] Length = 668 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 175/664 (26%), Positives = 295/664 (44%), Gaps = 85/664 (12%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D G V+YVGKA NL+ R++SY H +++T + ++S+I ++ + Sbjct: 8 KLELLPDSPGCYLHKDKNGTVIYVGKAKNLKNRVRSYFHGSHNT-KTELLVSEIEDLEWI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V + +E+L+LE N+I+R KP++NI+L+DDK +P++ IT+ K P L R +Y Sbjct: 67 VVGSNIESLVLEINLIQRYKPKYNIMLKDDKYYPFLKITN-EKYPRLLVVRKVQKDGATY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C H + C F I +C P + + + Sbjct: 126 FGPYPDVKAANEVKRLLDRIFPFRKCGL----HEKKVCFYFHIHQCLCPVVNHVDPQVFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 + E K+FL+G + + ++ M ++ ++E A +RD + A+ ++ + Sbjct: 182 DMTQEVKEFLTGSDKKIVNELEAKMMVSSDNMEFEQAAEYRDVIKAIGTLRTKQRVMNQD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ +++ + + Sbjct: 242 LKDRDVFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDAEEDFLTYIGQFYQDNNHM 301 Query: 299 CPENILLSEEAE------------------------------------------------ 310 P I + ++ + Sbjct: 302 MPREIFIPQDIDKESVEAVVAASQEGNLLTKAQAKEVDAKVFTAKTLKFSDQKDVEQSIV 361 Query: 311 --ETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLSTEISHQM 364 + L K +I P +GEK++++ A NA + Sbjct: 362 KLDKELSAEKRLSSLLAKTQIVQPSRGEKKQLVNMATKNAQSQLQLKFDVAERDILKTTK 421 Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424 +++ K +P RIE +DNS+IMG S V MVV + K YRK+ + V Sbjct: 422 AVENLGKILGIPKPV-RIESFDNSNIMGTSPVSAMVVFIDGKPSKKDYRKYKIKT--VVG 478 Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484 DD A MR V+ RR+S+ +K E L PD++ +DGG GQ++ A+ VLK Sbjct: 479 ADDYASMREVMTRRYSRALKEETAL--------------PDLIAMDGGAGQVNIAKQVLK 524 Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544 +L + I + + K K E F + + L+ + + + R++DE HRFAIT Sbjct: 525 ELGLS--IPVAGMQKNDKHQTS-ELLFGDPLDVVPLSRQSQEFFLLTRIQDEVHRFAITF 581 Query: 545 HRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 HR+ R K +S LD I G+GP RK+ LL +F +K I +S + +A + I ++A ++ Sbjct: 582 HRQLRGKNTFSSKLDGIVGLGPKRKQKLLTTFKNLKAIEEASVQEVAEAD-IPYEVAERV 640 Query: 604 YNHF 607 Sbjct: 641 KTTL 644 >gi|312792567|ref|YP_004025490.1| excinuclease ABC subunit C [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179707|gb|ADQ39877.1| excinuclease ABC, C subunit [Caldicellulosiruptor kristjanssonii 177R1B] Length = 593 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 191/612 (31%), Positives = 302/612 (49%), Gaps = 36/612 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRF 60 +P PGVY M D G V+YVGKA NL+ R++ Y ++ + M+ +I ++ + Sbjct: 6 KLSNLPTSPGVYIMKDENGNVIYVGKAVNLRNRVRQYFQNSQDMPPKTKLMVKKIKDLDY 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT EVEAL+LE N+IK +P++N+LLRDDK++ YI IT+ P L R Sbjct: 66 IVTDNEVEALILECNLIKEYRPKYNVLLRDDKNYQYIKITN-EMFPRLVTTRKVEKDGSR 124 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S +V++T+ L+ F LR+C + RPCL F I++C G C G++S E Sbjct: 125 YFGPYVSGYSVKQTVELLKSLFMLRTCKKKFPDQLGKGRPCLNFHIEKCLGVCKGDVSEE 184 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + V A K LSG + E++ M + +E A +++L++L I + Sbjct: 185 EYQKLVDRAVKVLSGKGDEIVEELKAKMFEYAENLMFEKAQEIKNKLSSLEQIITKQKVV 244 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 Y D + + I G+ F LK + + FL Q+Y+ Sbjct: 245 YADDRSEDVINFAKDDTHIAIVVLIIRNGKLINKEEFVLKAEED-----TFERFLEQYYS 299 Query: 296 D-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 D P+ I++ E +E K YG+KVK+T+PKQGEK+++++ A NA S Sbjct: 300 DVVSLPKEIIIPHRIENADNIEKMIEKLYGFKVKVTIPKQGEKKQLLDMAKKNAEISLAN 359 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + + + L + L + ++IE YD S+I G VG +VV + F K YRK Sbjct: 360 RQRVDDVYAEALLNLKNMLGLENEIEKIESYDISNIAGADNVGTLVVFEDGKFNKEFYRK 419 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + + QDD ++ VL RRF+ L K PD++++DGG+ Sbjct: 420 FKIKG--FEGQDDIRSVKEVLTRRFTNLEK---------------HGRIPDLILIDGGQN 462 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++AA VL L I + + K + + G+ + + + I ++ Sbjct: 463 QVNAALEVLNALGFS--IPVAGMVKDDRHKTRD---LIYNGKEVGIQEYPLVYKLIYAIQ 517 Query: 535 DEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 +E HRFA+ HR+ RKK S LDEI GIG RK L ++FG++ + ++S E + Sbjct: 518 EETHRFAVKFHREVRKKHLYESILDEIEGIGEKRKLKLFRTFGSIDNLRKASIEEIVKAA 577 Query: 594 GISKKIACKIYN 605 I ++A KI Sbjct: 578 DIPYEVALKIKE 589 >gi|115315141|ref|YP_763864.1| excinuclease ABC subunit C [Francisella tularensis subsp. holarctica OSU18] gi|156502901|ref|YP_001428966.1| excinuclease ABC subunit C [Francisella tularensis subsp. holarctica FTNF002-00] gi|119367652|sp|Q0BL07|UVRC_FRATO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|189038055|sp|A7NDF7|UVRC_FRATF RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|115130040|gb|ABI83227.1| UvrABC excinuclease subunit C [Francisella tularensis subsp. holarctica OSU18] gi|156253504|gb|ABU62010.1| excinuclease ABC subunit C [Francisella tularensis subsp. holarctica FTNF002-00] Length = 612 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 185/615 (30%), Positives = 319/615 (51%), Gaps = 30/615 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + GVY+MLD G ++YVGKA NL+ RI SY + M+ QI I T+T Sbjct: 17 NLTTHSGVYRMLDKHGEIIYVGKAKNLKNRINSYFSKGAKDSKTLMMVEQIARIEITITP 76 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSYFG 123 ++ EA LLE N+IK+ +P++NIL +DDKS+PY++I+ + K P + +R S +G FG Sbjct: 77 SDYEAYLLENNLIKQHRPKYNILFKDDKSYPYLVIS-RDKFPRVSFYRGKSAYKKGQCFG 135 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ S+ +V+ T+N++Q+ F +R C +S ++ R RPCL +QIKRC PC G +S ++Y E Sbjct: 136 PYVSISSVKNTLNTIQKIFPIRQCENSYYKSRVRPCLQYQIKRCLAPCVGLVSQQQYDEQ 195 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR-- 241 + KKFL+G ++ E+I+ M QA+ +YE A ++RD+L L +Q Sbjct: 196 LAILKKFLAGKFSSVLEEISAKMYQASEDMEYEKAQVYRDQLVVLRKLQQQQIVDIQEDK 255 Query: 242 -MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D +Y + A I G + + I+ FL FY Sbjct: 256 TFDVIGIYMQDSYASIALLQIQNGDVVADRHWSID-AKGQDKTSIMHAFLSHFYLGDEIR 314 Query: 301 ---ENILLSEEAEETSLLEISF--FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ + E + ++ ++ G + + + K ++ A +NA + Sbjct: 315 NIWPKNIILSKVEFADITDLMNSISQKIGQAINWIIAPAADNLKWLKLAEVNARQKLNIY 374 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 S++ +Q L+ + KRIE +D SH G + + VV ++G + +R++ Sbjct: 375 TSSKSQYQKRLESLKEFLESEKDIKRIECFDISHFQGEATIASCVVYTDDGEDRKSHRRY 434 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ +K+ DD A + + RR S ++ + PDV+I+DGGKGQ Sbjct: 435 NIKD--IKSGDDYAAIHQAVSRRVSSGLEADN---------------LPDVMIIDGGKGQ 477 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLR 534 + A+ V ++ +++++ ++S+ KG +R +G EK + L+ +P ++++R Sbjct: 478 IHQAEAVFREYGIQDKVQLVSLGKGVERISGKEKIYKGFDDTEYTLDEHNPGFLLLRQVR 537 Query: 535 DEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 D AH AI RK+ S ++EI G+GP R++ L+ FG + +SR+S + +A ++ Sbjct: 538 DSAHDHAIKGQRKKVSANRQSSIIEEIEGVGPKRRKALMMYFGGWQELSRASVDEIAKVK 597 Query: 594 GISKKIACKIYNHFH 608 GISKK+A +I+ FH Sbjct: 598 GISKKLAQEIWECFH 612 >gi|323339567|ref|ZP_08079841.1| excinuclease ABC subunit C [Lactobacillus ruminis ATCC 25644] gi|323092962|gb|EFZ35560.1| excinuclease ABC subunit C [Lactobacillus ruminis ATCC 25644] Length = 594 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 178/617 (28%), Positives = 288/617 (46%), Gaps = 42/617 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+ PG Y M D+ +++YVGKA NL+ R++SY ++H + ++S+I++ Sbjct: 9 KLKLLPDQPGCYLMKDVNAKIIYVGKAKNLKNRVRSYF-KSSHEGKTAKLVSEIHDFETI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT T+ EA LLE +I++ KP +NI L+ +PYI IT+ + P + G Y Sbjct: 68 VTSTDKEAFLLEITLIQKHKPYYNIKLKRGTGYPYIKITN-ERDPQIMIVSKVLNDGGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A ++T+ LQ+ + LR C ++ RPCL + + +C G C E+ E Y Sbjct: 127 FGPYPNVYAAQETVQLLQKVYPLRRCPG----NQKRPCLYYHMGQCLGACFKEVPVEAYE 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + + K FL+G +K ++ MN A K ++E A RD++ + I N Sbjct: 183 RNIRKIKSFLNGNVSQIKRELTAKMNDAAAKLEFERAAEIRDQIRYVEMTVEKQKIISND 242 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F+ + +K IQ F + ++ Sbjct: 243 NTPRDLFNFFMDKGWLSIQVFFIRQARLIKREKRLFPCVDLPEEELASFILQFYNQKNRI 302 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ IL+ ++ L EI V + PK+G+KR ++E A NA Sbjct: 303 LPKEILVPPGIDKKVLNEIL-------GVSVKTPKRGQKRDLLEMAHKNAQLVLEEKFRL 355 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + + + T LP+ R+E +D+SH+ G V MV + KN YRK Sbjct: 356 LELDDRKTVGAMNEITDALGLPNG-HRVEAFDHSHLQGTDIVSAMVCFVDGRPEKNLYRK 414 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + L D+ A R V+ RR+S+L+K ENL PD++++DG K Sbjct: 415 YKLKNT--DHADEAASTREVIYRRYSRLLKEHENL--------------PDLILMDGAKI 458 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q+ A VL+ + I + + K + GE + LN + Y +QR++ Sbjct: 459 QIDACIDVLQN-QLGLNIPVAGMVKNEHHKTAD--LMTETGEKIGLNPKSEGFYLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAI HR+ K + S L+ I G+GP + LL++FG++K +S +S E L + Sbjct: 516 DEVHRFAIAFHRQVHSKNSLSSRLERIKGVGPKTRTKLLRNFGSLKRLSEASVEELIGL- 574 Query: 594 GISKKIACKIYNHFHKN 610 GI +K A I K Sbjct: 575 GIPQKTAQTIKISLAKE 591 >gi|40062489|gb|AAR37441.1| excinuclease ABC, C subunit [uncultured marine bacterium 105] Length = 622 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 187/633 (29%), Positives = 299/633 (47%), Gaps = 48/633 (7%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + +PE PGVY + AG +YVGKA L+ R++SY+ ++ + RI ++ + ++ Sbjct: 8 VQISTLPEQPGVYLYFNGAGDTIYVGKASVLRDRVRSYLSAHGASPRIDALLDDVESLEI 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT + EAL LE N+IK P++N+LLRDDK++PY+ +T P + R Sbjct: 68 IVTDSVAEALALENNLIKHRAPKYNVLLRDDKNYPYLQLTTNEAFPRVLVSRRVQRDGAF 127 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEK 179 Y GPF KT+ R F +RSC + + R RPCL + IKRC PC S E+ Sbjct: 128 YAGPFLPTALARKTMLLTHRLFGIRSCNEVITGRRDRPCLEYDIKRCLAPCVANVCSQER 187 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI- 238 Y E V + FL G NH L + M QA E +E A RD + + +++ + Sbjct: 188 YAEAVEHTRMFLEGRNHELLNTLTSRMTQAAKNEHFEQAAEWRDAIRTIKALRHRQQKMS 247 Query: 239 ---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQIL--SYFLRQF 293 D F + I G+ + N + ++QF Sbjct: 248 LPTLGDRDAFGMRLGPAGVVIHIFQMRRGRVIDRIELVADVEELRDNREEYIVQVAVQQF 307 Query: 294 YTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 Y +P P +LL ++ +E ++ KV ++VPK+G KR ++E A NA + Sbjct: 308 YEARPAPPEVLLPTIIDDLEAVEEWLSERAKKKVHLSVPKRGNKRALLELASRNATIGYK 367 Query: 354 QKLSTE-ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + S E +SH ++ + L RIE +D S I G VG MVV +++ Y Sbjct: 368 ARYSEEVVSHHAAMEILRVELDLATSLHRIECFDISTIQGSDTVGAMVVCENGRMMRSAY 427 Query: 413 RKFNLHP-----------------NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK 455 RKF + + V DD + M ++ RR+ +L++ Sbjct: 428 RKFKIRGLVKGQQSIHRSSSSGLGSVVGKPDDFSAMHEIVFRRYRRLLEEG--------- 478 Query: 456 QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG 515 +PD++++DGGKGQLSA+ L++L + N I + + K + + Sbjct: 479 -----GPFPDLIVIDGGKGQLSASYAALEELGLSNLIAV-GLVKKKEV-----LVVRDRP 527 Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQS 574 + + L + L +QR+RDEAHR A+T HR+ R + S LD I G+G R+R+LL Sbjct: 528 DPITLPSANEALLLLQRIRDEAHRCAVTFHRRTRTARHLRSALDSIPGVGLQRRRILLTR 587 Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 FG+V + R+S E L ++ G ++A + ++F Sbjct: 588 FGSVAGVRRASREELMTVVG--ARVADAVLSYF 618 >gi|254369641|ref|ZP_04985651.1| UvrABC excinuclease subunit C [Francisella tularensis subsp. holarctica FSC022] gi|157122600|gb|EDO66729.1| UvrABC excinuclease subunit C [Francisella tularensis subsp. holarctica FSC022] Length = 612 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 185/615 (30%), Positives = 319/615 (51%), Gaps = 30/615 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + GVY+MLD G ++YVGKA NL+ RI SY + M+ QI I T+T Sbjct: 17 NLTTHSGVYRMLDKHGEIIYVGKAKNLKNRINSYFSKGAKDSKTLMMVEQIARIEITITP 76 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSYFG 123 ++ EA LLE N+IK+ +P++NIL +DDKS+PY++I+ + K P + +R S +G FG Sbjct: 77 SDYEAYLLENNLIKQHRPKYNILFKDDKSYPYLVIS-RDKFPRVSFYRGKSAYKKGQCFG 135 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ S+ +V+ T+N++Q+ F +R C +S ++ R RPCL +QIKRC PC G +S ++Y E Sbjct: 136 PYVSISSVKNTLNTIQKIFPIRQCENSYYKSRVRPCLQYQIKRCLAPCVGLVSQQQYDEQ 195 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR-- 241 + KKFL+G ++ E+I+ M QA+ +YE A ++RD+L L +Q Sbjct: 196 LAILKKFLAGKFSSVLEEISAKMYQASEDMEYEKAQVYRDQLVVLRKLQQQQIVDIQEDK 255 Query: 242 -MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D +Y + A I G + + I+ FL FY Sbjct: 256 TFDVIGIYMQDSYASIALLQIQNGDVVADRHWSID-AKGQDKTSIMHAFLSHFYLGDEIR 314 Query: 301 ---ENILLSEEAEETSLLEISF--FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ + E + ++ ++ G + + + K ++ A +NA + Sbjct: 315 NIWPKNIILSKVEFADITDLMNSISQKIGQAINWIIAPAADNLKWLKLAEVNARQKLNIY 374 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 S++ +Q L+ + KRIE +D SH G + + VV ++G + +R++ Sbjct: 375 TSSKSQYQKRLESLKEFLESEKDIKRIECFDISHFQGEATIASCVVYTDDGEDRKSHRRY 434 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ +K+ DD A + + RR S ++ + PDV+I+DGGKGQ Sbjct: 435 NIKD--IKSVDDYAAIHQAVSRRVSSGLEADN---------------LPDVMIIDGGKGQ 477 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLR 534 + A+ V ++ +++++ ++S+ KG +R +G EK + L+ +P ++++R Sbjct: 478 IHQAEAVFREYGIQDKVQLVSLGKGVERISGKEKIYKGFDDTEYTLDEHNPGFLLLRQVR 537 Query: 535 DEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 D AH AI RK+ S ++EI G+GP R++ L+ FG + +SR+S + +A ++ Sbjct: 538 DSAHDHAIKGQRKKVSANRQSSIIEEIEGVGPKRRKALMMYFGGWQELSRASVDEIAKVK 597 Query: 594 GISKKIACKIYNHFH 608 GISKK+A +I+ FH Sbjct: 598 GISKKLAQEIWECFH 612 >gi|255693285|ref|ZP_05416960.1| excinuclease ABC subunit C [Bacteroides finegoldii DSM 17565] gi|260620964|gb|EEX43835.1| excinuclease ABC subunit C [Bacteroides finegoldii DSM 17565] Length = 602 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 170/619 (27%), Positives = 300/619 (48%), Gaps = 47/619 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PG+YQ L+ G ++YVGKA NL+KR+ SY + + ++S+I +IR+ V Sbjct: 15 NLPEKPGIYQYLNSEGTIIYVGKAKNLKKRVYSYFSKEHEPGKTRVLVSKIVDIRYIVVN 74 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + + P ++K R SY+GP Sbjct: 75 TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRVFKTRKIIRNGSSYYGP 133 Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + ++ ++ ++ + LR+C +++ + CL + IK+C+GPC G S E Sbjct: 134 YSHIPSMYAVLDLIKHLYPLRTCNLNLSPENIRAGKFNVCLEYHIKKCAGPCIGLQSQED 193 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y++ + E K+ L G + + M + +E A +++ + + ++ ++ + Sbjct: 194 YLKNIDEIKEILKGNTQEVSRMLLEKMQTLAGEMKFEEAQKIKEKYLLIENYRSKSEVVS 253 Query: 240 NRMDCFSLYHNK----NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + + ++ + N A I G TF K + ++L+ + + Sbjct: 254 SVLHNIDVFSIEEDETNSAFINYLHITNGAINQAFTFEYKKKLNESKEELLTLGIIEMRE 313 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ + L V TVP++G+K+K++E +++N + + Sbjct: 314 RYKSQSREVIVPFELDMELN----------NVVFTVPQRGDKKKLLELSILNVKQYKADR 363 Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 L E ++K+ ++ L P +IE +DNS+I G AV VV + K Sbjct: 364 LKQAEKLNPEQRSMRLMKEIQQELHLERPPLQIECFDNSNIQGSDAVAACVVFKKAKPSK 423 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 YRK+N+ V DD A M+ V+ RR+ + I+ PD++I Sbjct: 424 KDYRKYNIKT--VVGPDDYASMKEVVRRRYQRAIEEN--------------APLPDLIIT 467 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ+ + V++ + I I +AK R E F + + + P+ Sbjct: 468 DGGKGQIEVVREVIED-ELHLNIPIAGLAK-DNRHRTSELLFGFPPQIIGIKQHSPLFRL 525 Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 + +++DE HRFAI+ HR +R K S LD I GIG K LL+ F +VK I +S E Sbjct: 526 LTQIQDEVHRFAISFHRDKRSKRQVASALDTIKGIGEKTKTALLKEFKSVKRIKEASLED 585 Query: 589 LASIEGISKKIACKIYNHF 607 +A++ G + A + Sbjct: 586 IAAVVG--EAKAKIVKEGL 602 >gi|328675813|gb|AEB28488.1| Excinuclease ABC subunit C [Francisella cf. novicida 3523] Length = 612 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 186/615 (30%), Positives = 316/615 (51%), Gaps = 30/615 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + GVY+MLD G ++YVGKA NL+ R+ SY + M+ QI I T+T Sbjct: 17 NLTTHSGVYRMLDKHGDIIYVGKAKNLKNRVNSYFSKGAKDSKTLMMVEQIARIEITITP 76 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSYFG 123 ++ EA LLE N+IK+ +P++NIL +DDKS+PY++I+ + K P + +R S +G FG Sbjct: 77 SDYEAYLLENNLIKQHRPKYNILFKDDKSYPYLVIS-RDKFPRVSFYRGKSAYKKGQCFG 135 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ S+ +V+ T+N +Q+ F +R C +S ++ R RPCL +QIKRC PC G S E+Y E Sbjct: 136 PYVSISSVKNTLNIIQKIFPIRQCENSYYKSRVRPCLQYQIKRCLAPCVGLASQEQYDEQ 195 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH---IQNHNDSIYN 240 + KKFL+G + E+I+ M QA+ +YE A ++RD+L L Q + + Sbjct: 196 LVILKKFLAGKFSTVLEEISAKMYQASEDMEYEKAQVYRDQLVILRKLQQQQIVDIQVDK 255 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D +Y + A I G + + I+ FL FY Sbjct: 256 TFDVIGIYMQDDYASIALLQIQNGDVVADRHWSID-AKGQDKTSIMHAFLSHFYLGDEIR 314 Query: 301 ---ENILLSEEAEETSLLEISF--FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ + E + ++ ++ G + + + K ++ A +NA + Sbjct: 315 NIWPKNIILSKVEFADITDLMNSISQKIGQAINWIIAPAADNLKWLKLAEVNARQKLNIY 374 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 S++ +Q L+ + L KRIE +D SH G + + VV + G + +R++ Sbjct: 375 TSSKSQYQKRLESLKEFLELEKDIKRIECFDISHFQGEATIASCVVYTDVGEDRKSHRRY 434 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ +K DD A + + RR S ++ + PDV+I+DGGKGQ Sbjct: 435 NIKD--IKAGDDYAAIHQAVSRRISSGLEADN---------------LPDVMIIDGGKGQ 477 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLR 534 + A+ V ++ +++++ ++S+ KG +R +G EK + L+ +P ++++R Sbjct: 478 IHQAEAVFREYGIQDKVQLVSLGKGVERISGKEKIYKGFDDTEYTLDEHNPGFLLLRQVR 537 Query: 535 DEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 D AH AI RK+ S ++EI G+GP R++ L+ FG + +SR+S + +A ++ Sbjct: 538 DSAHDHAIKGQRKKVSANRQSSIIEEIEGVGPKRRKALIMYFGGWQELSRASVDEIAKVK 597 Query: 594 GISKKIACKIYNHFH 608 GISKK+A +I+ FH Sbjct: 598 GISKKLAQEIWECFH 612 >gi|51473753|ref|YP_067510.1| excinuclease ABC subunit C [Rickettsia typhi str. Wilmington] gi|81390029|sp|Q68WG4|UVRC_RICTY RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|51460065|gb|AAU04028.1| excinuclease ABC subunit C [Rickettsia typhi str. Wilmington] Length = 626 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 231/629 (36%), Positives = 350/629 (55%), Gaps = 34/629 (5%) Query: 1 MSSEQM--PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNI 58 + S+ + PEC GVY+MLD++ +V+YVGKA L+KR+ +Y ++ ++ MI+ + Sbjct: 11 IKSKIIDAPECSGVYKMLDVSKQVIYVGKAKILKKRLTNY-IKSDLDNKTLRMIANTYFL 69 Query: 59 RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118 + +T +EVEALLLEA +IK+ +P+FNILL+DDKSFP+I ++ H P L K+R + Sbjct: 70 EYIITHSEVEALLLEAQLIKKFQPKFNILLKDDKSFPFIKLSLDHDFPQLLKYRGKALSD 129 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 G FGPFAS V T+ LQ+ F LRSC D+ F RTRPCL ++IKRC PC G+I+ E Sbjct: 130 GKLFGPFASNTQVNTTLTELQKIFKLRSCTDNYFNSRTRPCLQYEIKRCYAPCVGKINKE 189 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA--ALSHIQNHND 236 Y V + K FL L+E +++ M + + + +E A RDR+ + +++ Sbjct: 190 NYRVLVIQVKDFLQCRTRELQENLSKKMQELSSQMRFEEAAEIRDRIKALSYVQLKSRIL 249 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + D S+ H CI+ + GQ G +F + ST+ ++L YFL QFY Sbjct: 250 DVVKNADIISIVHKDLHYCIEVALYRAGQPYGNIPYFFSSTENSTHEEVLEYFLLQFYQK 309 Query: 297 KPCPENILLSEEAEETS-LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P I+++ E ++E + I VP +G+K K++ +A +NA S Q Sbjct: 310 QQVPSEIIMNHEINSKENVIEAIKKINNISDLSIIVPHKGDKAKLVHKAEVNALFSLEQY 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L + I+ + K F LP IP+RIEIYDNSHI G AVG MVV G+ GF K +YR F Sbjct: 370 LKKITKNTEIMFEVKKLFDLPEIPERIEIYDNSHIQGMFAVGVMVVAGKIGFDKKEYRVF 429 Query: 416 NLHPNDVK-----------TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWP 464 +L + DD M+R VL RRF++L L P Sbjct: 430 SLSSRNFTIGSEIELRDDIKGDDYGMLRQVLTRRFTRLKNEPNKL--------------P 475 Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524 ++I+DGGKG L+ + V+ K + I + ++KG R+AG+E+ ++ E L+ Sbjct: 476 SLMIIDGGKGHLTVVKEVMDKFGM--NIPFVCMSKGRDRNAGLEQLHMQGKEVFTLDKNL 533 Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISR 583 ++ ++Q LRDEAH FAI HR R +A S LD+I+G+G RK LL FG+ K + Sbjct: 534 LVMKYLQILRDEAHNFAIKNHRLGRSRAIKISSLDDIDGVGEARKTALLHYFGSYKAVCN 593 Query: 584 SSPETLASIEGISKKIACKIYNHFHKNTS 612 ++ + LA ++GISK +A I+N ++ S Sbjct: 594 ATIDELAKVKGISKSLASMIFNVLNRKIS 622 >gi|293401508|ref|ZP_06645651.1| excinuclease ABC subunit C [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305146|gb|EFE46392.1| excinuclease ABC subunit C [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 593 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 178/609 (29%), Positives = 290/609 (47%), Gaps = 44/609 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M +I G ++YVGKA L+ R++ Y H + T +++ I++ + VT + Sbjct: 14 LPALPGCYLMKNIDGDIIYVGKAKKLKNRVRQYFVGA-HDFKTTRLVANIDDFEYIVTGS 72 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLE N+IK+ P +NI+ DDK++PYI +T K K P L R++ + YFGPF Sbjct: 73 EKEALLLEINLIKKHTPPYNIMFMDDKTYPYIKLT-KEKAPILRVVRNTKDRKAEYFGPF 131 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 A +T+ L + + LR C + CL + + +C PC I + Y + + Sbjct: 132 PDSGAAWETMKLLNQLYPLRKCRHLP----KKACLYYHMGQCLAPCEQAIDEKVYADMAN 187 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 +KFL G + ++ +M QA+ + +E A + + A+ H+ + Sbjct: 188 GIRKFLKGDVKEILTQLKADMQQASEELAFEKAQEKLNLIHAIEHVTAKQQIDFKDHKDR 247 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F Y +K IQ F G+ F+ Q+Y P P+ Sbjct: 248 DVFGYYVDKGYISIQGFFVRGGKLLERELSI--QPLYEQPQDAFISFILQYYAKNPLPQE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST-EIS 361 ILL +E E L EI + KI P +G+K K++E L NA +H QK E Sbjct: 306 ILLPKEYEIEHLQEI------LSEAKILQPLRGDKLKLVEMVLANAKNAHQQKFDLVERK 359 Query: 362 HQMILKDFTKKFA-LPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 + + L RIE++DNSHI G V MVV + + YR + L Sbjct: 360 ESRREEAIQQLCQLLHKDIHRIELFDNSHISGAFNVSGMVVFKDGEPSRQDYRTYRL--- 416 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 + D M+ V+ RR+ +L+K +PD++I+DGG Q+ AA+ Sbjct: 417 -GEYVSDLDSMKEVVYRRYFRLLKER--------------GRFPDLLIVDGGYLQIEAAK 461 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 +++ L+V +T+ + K +GE L + + + + +++DE HRF Sbjct: 462 EIVEALDV--PVTLCGLVKNDNHRTAN--LMNAEGEILPVERDSSLFFLLTQMQDEVHRF 517 Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI+ HRK R K S LDE+ GIG +RK+ + + F ++K + + + +A + + +K+ Sbjct: 518 AISYHRKLRGKAMTKSILDEVEGIGEVRKKEIWKHFKSLKRLKEADVDEIAQV--VPRKV 575 Query: 600 ACKIYNHFH 608 A I+N H Sbjct: 576 AQNIFNILH 584 >gi|81428665|ref|YP_395665.1| excinuclease ABC subunit C [Lactobacillus sakei subsp. sakei 23K] gi|90111069|sp|Q38WS5|UVRC_LACSS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|78610307|emb|CAI55356.1| Excinuclease ABC, subunit C [Lactobacillus sakei subsp. sakei 23K] Length = 592 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 179/612 (29%), Positives = 286/612 (46%), Gaps = 42/612 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M DI +++YVGKA NL+ R++SY ++H + ++S+I + +T T Sbjct: 13 LPALPGCYLMKDINAQIIYVGKAKNLKNRVRSYF-KSSHEGKTAKLVSEIVDFETIITST 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 EA LLE +I++ +P FNI L+ +PYI IT+ + P L D YFGP+ Sbjct: 72 NKEAFLLEITLIQKHQPYFNIKLKRGTGYPYIKITN-ERDPRLLITGDVKKDGSYYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 V A ++T+ LQR + LR C H+ RPCL + + +C G C E+ Y E + Sbjct: 131 PDVYAAQETLRFLQRVYPLRRCQG----HQGRPCLYYHMGQCLGACFQEVPEAAYTEQIK 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 + K+FL+G N+K+ + M A + +E A RD+L + I N Sbjct: 187 KIKRFLNGQVDNVKKDLTEKMATAAQEMQFERAAELRDQLRYIEATVEKQKIISNDHTPR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ Y +K IQ F + + + P Sbjct: 247 DLFAFYMDKGWLSIQIFFIRQARLIRREKRLFPCVNTPEEELATFILQWYNRKNNVLPRE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358 IL+ + E+ L +I +V I P++GEK+ ++E A N+ Sbjct: 307 ILVPDGIEKQVLSDIL-------QVPIRTPQRGEKKALMEMAQKNSRLVLEEKFRLLELD 359 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + LPH IE +D+SHI G V MV + K YRK+ L Sbjct: 360 NRKTVGAQDEIMDALGLPHG-HVIEAFDHSHIQGTDPVSAMVTFVDGRAEKKLYRKYKLT 418 Query: 419 PNDVK-TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + ++ A R V+ RR+S+L+K + L PD++++DGG +L+ Sbjct: 419 QTAERAGANEDANTREVIYRRYSRLLKEGKAL--------------PDLILMDGGVVELN 464 Query: 478 AAQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 AA+ VL+ +L + I + + K F + + + L+ + Y + R++DE Sbjct: 465 AAKDVLENELGLT--IPVAGMVKDNHHKTAS-LLFGEADQTIQLDPKSQGFYLLTRIQDE 521 Query: 537 AHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 HRFAI+ HR+ R K + S LD+I G+GP + LL++FG++K I +S E L ++ GI Sbjct: 522 VHRFAISFHRQLRGKNSLSSKLDDIKGVGPKTRTKLLKNFGSMKHIKDASVEELEAL-GI 580 Query: 596 SKKIACKIYNHF 607 SK +A I Sbjct: 581 SKTVAQTIKLSL 592 >gi|160914271|ref|ZP_02076492.1| hypothetical protein EUBDOL_00281 [Eubacterium dolichum DSM 3991] gi|158433898|gb|EDP12187.1| hypothetical protein EUBDOL_00281 [Eubacterium dolichum DSM 3991] Length = 592 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 178/610 (29%), Positives = 288/610 (47%), Gaps = 45/610 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M + G ++YVGKA L+ R++ Y H H + T +++ I++ + V + Sbjct: 14 LPALPGCYLMKNKQGEIIYVGKAKKLKNRVRQYFHGA-HDFKTTRLVANIDDFEYIVCGS 72 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLE N+IK+ P++NI+ DDK++PY+ +T K K P L R++ + +YFGPF Sbjct: 73 EKEALLLEINLIKKHTPQYNIMFMDDKTYPYLKLT-KEKAPLLRVVRNTKDKKATYFGPF 131 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 A T L R + LR C R + CL + + +C PC I + Y + Sbjct: 132 PDSSAAYDTQKLLNRIYPLRKCN----RLPKKECLYYHMGQCLAPCVNVIDEQVYADMAQ 187 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 +KFL G + E++ M +A+ +E A + A+ H+ + Sbjct: 188 GIRKFLRGDVKEIVERLKAEMKEASEALQFEKAQEKLSLIQAIEHVTARQQIDFKDHKDR 247 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F Y +K IQ F G+ T + F+ Q+Y + P P+ Sbjct: 248 DVFGYYVDKGYISIQGFFMRGGKLIERTLSI--TPLYEDAMEAFQSFVLQYYANNPLPQE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS-TEIS 361 ILL +E + L++I K I P +G+K K++E L NA SH QK Sbjct: 306 ILLPKEYDVEHLVQILDTK-------IVQPIRGDKLKLVEMVLANAKNSHEQKFELISRK 358 Query: 362 HQMILKDFTKKFA-LPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 + + L RIE++DNSHI G V MVV + K YR + L Sbjct: 359 DHRREEGMQQLCQLLGKEIHRIELFDNSHISGAYNVSGMVVYKDGEPSKQDYRTYRLQE- 417 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 + D M+ V+ RR+ +L+K +PD++I+DGG Q+ AA+ Sbjct: 418 ---YRSDLDSMKEVIYRRYVRLLKER--------------GKFPDLLIVDGGWLQIEAAK 460 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 ++ L V IT+ + K +G L ++ + + + +++DE HRF Sbjct: 461 EIIDALEVS--ITVCGLVKDDNHRTSN--LMDSEGRVLAVSKESSLFFLLTQMQDEVHRF 516 Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI+ HR+ R K S LDE+ GIG +RK+ + F ++K + ++S E +A++ + ++ Sbjct: 517 AISYHRRLRGKGMTKSILDEVEGIGNVRKKKIWNHFKSLKRLKQASVEEIAAV--VPMQV 574 Query: 600 ACKIYNHFHK 609 A +YN H Sbjct: 575 AQSVYNILHN 584 >gi|157828722|ref|YP_001494964.1| excinuclease ABC subunit C [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933449|ref|YP_001650238.1| excinuclease ABC subunit C [Rickettsia rickettsii str. Iowa] gi|189038081|sp|B0BYA6|UVRC_RICRO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|189038082|sp|A8GST1|UVRC_RICRS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|157801203|gb|ABV76456.1| excinuclease ABC subunit C [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908536|gb|ABY72832.1| excinuclease ABC subunit C [Rickettsia rickettsii str. Iowa] Length = 639 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 231/630 (36%), Positives = 346/630 (54%), Gaps = 24/630 (3%) Query: 1 MSSEQM--PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNI 58 + S+ + PE GVY+M D+ +VLYVGKA NL+KR+ +Y +N ++ MI+ + Sbjct: 11 IKSKLIDAPERSGVYRMFDVNKQVLYVGKAKNLKKRLTNY-IKSNLDNKTLRMIANTCFL 69 Query: 59 RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118 +++T +EVEALLLEA +IK+ +P+FNILL+D KSFP+I + +H P L K+R + Sbjct: 70 EYSITNSEVEALLLEAQLIKKFQPKFNILLKDCKSFPFIKLRLEHDFPQLLKYRGKTLSD 129 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 G +FGPFAS V T+ LQ+ F LRSC D+ F RTRPCL ++IKRC PC G+I+ E Sbjct: 130 GKFFGPFASSVDVNTTLTELQKIFKLRSCTDNYFNSRTRPCLQYEIKRCYAPCVGKINKE 189 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y + V + K FL G L+E ++R M + + + +E A RDR+ ALS++Q Sbjct: 190 DYRDLVTQVKDFLQGRTKELQENLSRKMEELSSQMRFEEAAEIRDRIKALSYVQLKAGVS 249 Query: 239 --YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 D ++ C++ + GQ G +F + ST ++L YFL QFY Sbjct: 250 DVVKDADIIAIVEKNGHYCVEVFLYRAGQACGNIPYFPTSTENSTKEEVLEYFLLQFYQK 309 Query: 297 KPCPENILLSEEAEETS-LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P I+++ E + ++E ++ ITVP +G K K+++ A INA S Q Sbjct: 310 QHVPAAIIINHEINDKENVIEAIKKINNILQLNITVPNKGGKAKLVQNAEINALFSLEQY 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L +Q I+ + + F L IP+RIEIYDNSHI G AVG MVV G+ GF K +YR F Sbjct: 370 LKKFAKNQEIIFEIKELFGLSAIPERIEIYDNSHIQGKFAVGVMVVAGKVGFDKKEYRVF 429 Query: 416 NLH-PNDVKTQDDCAMMRMVLERRFS--------------QLIKNEENLNFHPKKQEYSF 460 N++ P+ V + + +++ F + L + Sbjct: 430 NVYAPSLVCHSRESGDPKRLMDSCFRGNGIKNCWGDIKGDDYEMLRQVLTRRLTRLRQEP 489 Query: 461 PSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVL 520 P ++I+DGGKG L + V+ K E I + ++KG R+AG E+F V E L Sbjct: 490 HKLPSLMIIDGGKGHLGVVKEVMDKF--EMNIPFVCMSKGVDRNAGFEQFHVIGKEVFTL 547 Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVK 579 + P++ ++Q LRDEAH FAI HR R +A S LD+I G+G RK+ LL FG+ K Sbjct: 548 DKNLPVMKYLQILRDEAHNFAIKNHRLGRSRAIKISRLDDIEGVGETRKKALLHYFGSYK 607 Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHK 609 + ++ LA + GI+K +A I+N H+ Sbjct: 608 AVCDATIYELAKVNGINKLLAEMIFNVLHR 637 >gi|153807188|ref|ZP_01959856.1| hypothetical protein BACCAC_01466 [Bacteroides caccae ATCC 43185] gi|149130308|gb|EDM21518.1| hypothetical protein BACCAC_01466 [Bacteroides caccae ATCC 43185] Length = 609 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 167/622 (26%), Positives = 301/622 (48%), Gaps = 47/622 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PG+YQ L+ G ++YVGKA NL+KR+ SY + + ++S+I +IR+ V Sbjct: 19 NLPEKPGIYQYLNAEGTIIYVGKAKNLKKRVYSYFSKEHEPGKTRVLVSKIADIRYIVVN 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + + P +++ R SY+GP Sbjct: 79 TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRIFRTRKIIRNGSSYYGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + ++ ++ ++ + LR+C +++ + CL + IK C+GPC G S E+ Sbjct: 138 YSHIPSMYAVLDLIKHLYPLRTCSLNLTPENIRAGKFNVCLEYHIKNCAGPCIGLQSQEE 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y++ + E K+ L G + + M + +E A +++ + + ++ ++ + Sbjct: 198 YLKNIDEIKEILKGNTQEISRMLLEKMQTLAGEMKFEEAQKIKEKYLLIENYRSKSEVVS 257 Query: 240 NRMDCFSLYHNK----NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + ++ + N A I G TF K + ++L+ + + Sbjct: 258 AVLHNIDVFSIEEDDSNSAFINYLHITNGAINQAFTFEYKKKLNESKEELLTLGIIEMRE 317 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ + L V TVP++G+K+K+++ +++N + + Sbjct: 318 RYKSRSREIIVPFELDLELN----------NVVFTVPQRGDKKKLLDLSILNVKQYKADR 367 Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 + E ++K+ ++ L P +IE +DNS+I G AV VV + K Sbjct: 368 MKQAEKLNPEQRSMRLMKEIQQELHLERPPLQIECFDNSNIQGSDAVAACVVFKKAKPSK 427 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 YRK+N+ V DD A M+ V++RR+ + I+ PD++I Sbjct: 428 KDYRKYNIKT--VVGPDDYASMKEVVKRRYQRAIEE--------------SSPLPDLIIT 471 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ+ + V++ + I I +AK R E F + + + P+ Sbjct: 472 DGGKGQMEVVREVIED-ELGLNIPIAGLAK-DNRHRTSELLFGFPPQTIGIKQHTPLFRL 529 Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 + +++DE HRFAI+ HR +R K S LD I GIG K LL+ F +VK I +S E Sbjct: 530 LTQIQDEVHRFAISFHRDKRSKRQVASALDSIKGIGEKTKTALLKEFKSVKRIKEASLED 589 Query: 589 LASIEGISKKIACKIYNHFHKN 610 +++I I + A + + Sbjct: 590 ISAI--IGEAKAKTVKEGLNNE 609 >gi|62261597|gb|AAX78001.1| unknown protein [synthetic construct] Length = 647 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 184/615 (29%), Positives = 319/615 (51%), Gaps = 30/615 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + GVY+MLD G ++YVGKA NL+ R+ SY + M+ QI I T+T Sbjct: 43 NLTTHSGVYRMLDKHGEIIYVGKAKNLKNRVNSYFSKGAKDSKTLMMVEQIARIEITITP 102 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSYFG 123 ++ EA LLE N+IK+ +P++NIL +DDKS+PY++I+ + K P + +R S +G FG Sbjct: 103 SDYEAYLLENNLIKQHRPKYNILFKDDKSYPYLVIS-RDKFPRVSFYRSKSAYKKGQCFG 161 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ S+ +V+ T+N++Q+ F +R C +S ++ R RPCL +QIK C PC G +S ++Y E Sbjct: 162 PYVSISSVKNTLNTIQKIFPIRQCENSYYKSRVRPCLQYQIKCCLAPCVGLVSQQQYDEQ 221 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR-- 241 + KKFL+G ++ E+I+ M QA+ +YE A ++RD+L L +Q Sbjct: 222 LAILKKFLAGKFSSVLEEISAKMYQASEDMEYEKAQVYRDQLVVLRKLQQQQIVDIQEDK 281 Query: 242 -MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D +Y + A I G + + I+ FL FY Sbjct: 282 TFDVIGIYMQDSYASIALLQIQNGDVVADRHWSID-AKGQDKTSIMHAFLSHFYLGDEIR 340 Query: 301 ---ENILLSEEAEETSLLEISF--FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ + E + ++ ++ G + + + K ++ A +NA + Sbjct: 341 NIWPKNIILSKVEFADITDLMNSISQKIGQAINWIIAPAADNLKWLKLAEVNARQKLNIY 400 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 S++ +Q L+ + L KRIE +D SH G + + VV ++G + +R++ Sbjct: 401 TSSKSQYQKRLESLKEFLELEKDIKRIECFDISHFQGEATIASCVVYTDDGEDRKSHRRY 460 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ +K+ DD A + + RR S ++ + PDV+I+DGGKGQ Sbjct: 461 NIKD--IKSGDDYAAIHQAVSRRVSSGLEADN---------------LPDVMIIDGGKGQ 503 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLR 534 + A+ V ++ +++++ ++S+ KG +R +G EK + L+ +P ++++R Sbjct: 504 IHQAEAVFREYGIQDKVQLVSLGKGIERISGKEKIYKGFDDTEYTLDEHNPGFLLLRQVR 563 Query: 535 DEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 D AH AI RK+ S ++EI G+GP R++ L+ FG + +SR+S + +A ++ Sbjct: 564 DSAHDHAIKGQRKKVSANRQSSIIEEIEGVGPKRRKALMMYFGGWQELSRASVDEIAKVK 623 Query: 594 GISKKIACKIYNHFH 608 GISKK+A +I+ FH Sbjct: 624 GISKKLAQEIWECFH 638 >gi|15892787|ref|NP_360501.1| excinuclease ABC subunit C [Rickettsia conorii str. Malish 7] gi|32130306|sp|Q92HA7|UVRC_RICCN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|15619968|gb|AAL03402.1| excinuclease ABC subunit C [Rickettsia conorii str. Malish 7] Length = 639 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 230/630 (36%), Positives = 343/630 (54%), Gaps = 24/630 (3%) Query: 1 MSSEQM--PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNI 58 + S+ + PE GVY+M D+ +VLYVGKA NL+KR+ +Y +N ++ MI+ + Sbjct: 11 IKSKLIDAPERSGVYRMFDVNKQVLYVGKAKNLKKRLTNY-IKSNLDNKTLRMIANTCFL 69 Query: 59 RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118 +++T +EVEALLLEA +IK+ +P+FNILL+D KSFP+I + H P L K+R + Sbjct: 70 EYSITNSEVEALLLEAQLIKKFQPKFNILLKDCKSFPFIKLRLDHDFPQLLKYRGKTLSD 129 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 G +FGPFAS V T+ LQ+ F LRSC D+ F RTRPCL ++IKRC PC G+I+ E Sbjct: 130 GKFFGPFASSVEVNTTLTELQKIFKLRSCTDNYFNSRTRPCLQYEIKRCYAPCVGKINKE 189 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y + V + K FL G L+E ++R M + + + +E A RDR+ ALS++Q Sbjct: 190 DYRDLVTQVKDFLQGRTKELQENLSRKMEELSSQMRFEEAAEIRDRIKALSYVQLKAGVS 249 Query: 239 --YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 D ++ C++ + GQ G +F ST ++L YFL QFY Sbjct: 250 DVVKDADIIAIVEKNGHYCVEVFLYRAGQACGNIPYFPTATENSTKEEVLEYFLLQFYQK 309 Query: 297 KPCPENILLSEEAEETS-LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P I+++ E + ++E ++ ITVP +G K K+++ A +A S Q Sbjct: 310 QHVPAAIIINHEINDKENVIEAIKKINNILQINITVPNKGGKAKLVQNAETHALFSLEQY 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L +Q I+ + + F L IP+RIEIYDNSHI G AVG MVV G+ GF K +YR F Sbjct: 370 LKKFAKNQEIMFEIKELFGLSEIPERIEIYDNSHIQGKFAVGVMVVAGKVGFDKKEYRVF 429 Query: 416 NLH-PNDVKTQDDCAMMRMVLERRFS--------------QLIKNEENLNFHPKKQEYSF 460 N+H P+ V + + +++ F + L + Sbjct: 430 NVHTPSLVCHSRESGDPKRLMDSCFRGNGIKNCGGDIKGDDYEMLRQVLTRRLTRLRQEP 489 Query: 461 PSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVL 520 P ++I+DGGKG L + V+ K E I + ++KG R+AG E+F V E L Sbjct: 490 HKLPSLMIIDGGKGHLGVVKEVMDKF--EMNIPFVCMSKGVDRNAGFEQFHVIGKEVFTL 547 Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVK 579 + P++ ++Q LRDEAH FAI HR R +A S LD+I G+G RK+ LL FG+ K Sbjct: 548 DKNLPVMKYLQILRDEAHNFAIKNHRLGRSRAIKISRLDDIEGVGETRKKALLHYFGSYK 607 Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHK 609 + ++ LA + GI+K +A I+N H+ Sbjct: 608 AVCDATIYELAKVNGINKLLAEMIFNVLHR 637 >gi|304314598|ref|YP_003849745.1| excinuclease ABC, subunit C [Methanothermobacter marburgensis str. Marburg] gi|302588057|gb|ADL58432.1| excinuclease ABC, subunit C [Methanothermobacter marburgensis str. Marburg] Length = 579 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 186/616 (30%), Positives = 308/616 (50%), Gaps = 46/616 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 ++P+ GVY D RVLYVGK+ +++KR+ SY + R+ M+ +++I + Sbjct: 6 DPGKLPDRTGVYIFRDENDRVLYVGKSVSIRKRVASYFRE-HENPRLRVMMRHLDSIEYI 64 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 +T E EAL+LE+N+IKR +P +N+ L+DDK +P+I IT + P + R Y Sbjct: 65 LTENEKEALILESNLIKRYRPPYNVRLKDDKRYPFIKIT-DEEYPRVIITRTIGGDSARY 123 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GPF +V KT+ ++ F +RS R PCL QI C PC G IS E Y+ Sbjct: 124 YGPFTDTGSVRKTLKFIKSLFKIRS-----CRRMDGPCLNSQIDLCHAPCDGGISREDYL 178 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 E + F G + E + M A+ K ++E A + RD++ ++ + + + Sbjct: 179 EIIERVDLFFQGRYREVIEALEAEMRDASEKLEFERAAVIRDQIESIREVMERQYAAFTD 238 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D +L + + + + G+ G F L+ ++ +IL FL+Q+Y Sbjct: 239 SIDQDIVALETSGDNSVVVVLQIRDGKITGKDDFMLRGSAD--RREILESFLKQYYAIPR 296 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 + +L + ++ + G +V+I P+ G R+++ A NA + L Sbjct: 297 YIPSEILVQYPVGDEVIAEWLSELRGGEVRIHSPEGGSGRRLLNIAWKNA----SVILQQ 352 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + + L + + LP IP+RIE D S+I G A G + V + YR++ + Sbjct: 353 KGKVKDALLELKGELKLPSIPRRIEGLDISNIGGEHATGSVAVFLDGKPAPGMYRRYRIR 412 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 DD AMMR ++ RR+S + PD+V++DGGKGQLSA Sbjct: 413 T---MGPDDYAMMRELVMRRYSGDETEK-----------------PDLVLIDGGKGQLSA 452 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A L+ V+ + ++ IAK + + + E + ++ D L ++ LRDEAH Sbjct: 453 ALDALRSCGVD--LPLVGIAKREE-----DVYLPGLSEPVEVS--DGALQLLRHLRDEAH 503 Query: 539 RFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFA+ HR+ R +K+ S LD I G+GP RKR LL+ FG+V+ I +S E LA++ G+++ Sbjct: 504 RFAVEYHRRIRDRKSLESELDGIRGVGPRRKRALLEHFGSVEGIGNASVEELAAVRGMNR 563 Query: 598 KIACKIYNHFHKNTSH 613 +A +IY HF + + Sbjct: 564 PVAERIYRHFRRGDNG 579 >gi|225631233|ref|ZP_03787924.1| excinuclease ABC, C subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591071|gb|EEH12262.1| excinuclease ABC, C subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 605 Score = 456 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 236/612 (38%), Positives = 350/612 (57%), Gaps = 26/612 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + P+ GVY+M+ +VLYVGKA NL+ R+ Y+ N + RI M+ Q+ + Sbjct: 8 QIKSSPQSCGVYKMVGDKNKVLYVGKAKNLKSRLSDYLQFENLSERIRVMLLQVIKVEIF 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-STIQGS 120 +T E+EALLLEA +IK LKP +NI+L+D K +PYI I+ KH P + K+R + Sbjct: 68 ITENEIEALLLEAQLIKSLKPLYNIVLKDGKFYPYITIS-KHDYPRIAKYRGKFKKNEFH 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 Y+GPF S AV++TI SLQ+ F LR C+D F RPC+ +QIKRCS PC +I+ + Y Sbjct: 127 YYGPFTSAAAVKQTILSLQKAFLLRVCSDQYFSSTKRPCIEYQIKRCSAPCINKITKDDY 186 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND--SI 238 + V +A+ L G N +KE++ M + + +E+YE A I+RDR+ L IQ + S Sbjct: 187 CQSVKQARNTLLGRNKEVKEQLLFTMRKCSSEENYELAAIYRDRVKFLEQIQIQHTDFSF 246 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D FS+ ++LACI F N G+ +F + + +N +ILS FL FY Sbjct: 247 EKDADFFSIVREEDLACISVLSFRNKDNYGSTPYFAENSGDHSNDEILSTFLVNFYNSAN 306 Query: 299 CPE-NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P I + + + ++E + +K VK+ K ++R +++ N+ S QKL Sbjct: 307 IPPIQIYVPDSIVDKEIIEQALYKVAQKPVKVLHAKNKKERDLLKFVYDNSQHSLEQKLI 366 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 ++ L++ +K F LP+IPKRIE+YDNSHI G +G MVV G+ GF+K++YRKF + Sbjct: 367 DYRNNLEKLEELSKIFLLPNIPKRIEVYDNSHIFGNQQIGVMVVAGQGGFLKSEYRKFTI 426 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + DD MMR VL RRFS IK PD +++DGG G +S Sbjct: 427 KEK--FSGDDYKMMREVLTRRFSGNIK----------------GIIPDFLLIDGGPGHVS 468 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 Q VL+ LN+ + +AKGP R+AG E+F++ E L ++ ++Q LR+EA Sbjct: 469 IVQNVLEVLNI--NVPFACMAKGPDRNAGNERFYMLGREEFSLANDSKVMLYLQSLRNEA 526 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT+HRK+R K S L +I GIG RK+ L+ FG+VK IS++S + ++ GIS Sbjct: 527 HRFAITSHRKKRDKQFIVSQLSKIPGIGNKRKKALMSYFGSVKNISKASLAEIQNVPGIS 586 Query: 597 KKIACKIYNHFH 608 K +A I + + Sbjct: 587 KGLAEVILKYVN 598 >gi|270291408|ref|ZP_06197630.1| excinuclease ABC, C subunit [Pediococcus acidilactici 7_4] gi|270280254|gb|EFA26090.1| excinuclease ABC, C subunit [Pediococcus acidilactici 7_4] Length = 594 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 183/607 (30%), Positives = 295/607 (48%), Gaps = 41/607 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG YQM ++ +++YVGKA NL+ R++SY ++H + ++S+I + + VT + Sbjct: 13 LPDKPGCYQMKNLNSQIIYVGKAKNLKNRVRSYF-KSSHEGKTAKLVSEIADFDYIVTAS 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 + EA LLE +IK+ +P +NI L+ +PYI IT+ K P + + G YFGP+ Sbjct: 72 DKEAFLLEITLIKKYQPYYNIKLKKGTGYPYIKITN-EKDPRMQIVSNVRRDGGYYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A E+T++ L++ + LR C RPCL + + +C G C E+ E+Y + + Sbjct: 131 PNVYAAEETLHFLEKVYPLRRCNGYQ----GRPCLYYHMGQCLGACFKEVPKEEYDQQIA 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 + K FL G +K+ + M QA+ ++E A RD++ + I N Sbjct: 187 KIKSFLRGNVAKVKKSLQAKMQQASEAMEFERAAEIRDQIHYIEVTVEKQRIISNDRTPR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ Y +K IQ F + S+ + +K P Sbjct: 247 DLFNFYLDKGWLSIQIFFIRQSRLMKREKRLFPIASDVADEFSSFILQFYNNKNKVLPNE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358 IL+ E + + EI V + PK+GEKR ++ A NA Sbjct: 307 ILVPEGLDNQIISEIL-------GVPVRTPKRGEKRDLMNLARENAQITLEEKFRLLELD 359 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +K+ T +P RIE +D+SHI G +V MVV + K YRKF L+ Sbjct: 360 ESKTVGAMKEITDALGIP-EGHRIEAFDHSHIQGADSVSAMVVFTDGKPDKKMYRKFKLN 418 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V D+ A R V+ RR+ +L+K ++L PD++++DGG QL+A Sbjct: 419 T--VDHADEAASTREVIRRRYVRLLKEHQSL--------------PDLILMDGGDVQLNA 462 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ VL + I + + K K + F + + + L+ + Y +QR++DE H Sbjct: 463 ARDVLVN-ELSLHIPVAGMVKNDKHKTA-DLIFGDQDQRVQLDPKSQGFYLVQRIQDEVH 520 Query: 539 RFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ K + S LD ING+GP + LL+ FG++ I + E + ++ GIS Sbjct: 521 RFAITFHRQMHAKNSLSSQLDSINGVGPKTRNKLLREFGSLNKIRDAKIEEIEAL-GISA 579 Query: 598 KIACKIY 604 K+A I Sbjct: 580 KVAKTIK 586 >gi|110636600|ref|YP_676807.1| excinuclease ABC subunit C [Cytophaga hutchinsonii ATCC 33406] gi|119367645|sp|Q11YP9|UVRC_CYTH3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|110279281|gb|ABG57467.1| excinuclease ABC, subunit C [Cytophaga hutchinsonii ATCC 33406] Length = 596 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 181/621 (29%), Positives = 297/621 (47%), Gaps = 49/621 (7%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFT 61 +++P PGVY+ I ++YVGKA +L+KR+ +Y N + M+ +I + +T Sbjct: 11 LKELPSSPGVYRFYSIEKELIYVGKAKSLRKRVANYFTNKKNLDQKTRSMVRKIYHAEYT 70 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 + +E EALLLE N+IK KP++N+LLRDDK++P+I ++ P L R +G Y Sbjct: 71 LVNSEYEALLLENNLIKENKPKYNVLLRDDKTYPFICLSSA-DFPTLTTTRKIDKKKGEY 129 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176 FGP+ S A+ + SL++TFF+R+C ++ H+ + CL + I C GPC G+ Sbjct: 130 FGPYTSGRAMHSLVESLRKTFFIRTCDLNLTKQNIDAHKFKVCLEYHIGNCKGPCEGKQE 189 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN- 235 E Y + + + L G ++K+ M A +E A ++R ++ ++ + Sbjct: 190 KEDYDVSIIQVRNILKGNFSSVKKYYQEKMLSAAEDMQFEKAQFFKERYNSVLGLEKSSL 249 Query: 236 --DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ-ILSYFLRQ 292 + N ++ +++ N A + G T +K + T + ++ Sbjct: 250 IVNPDINNLEVYTIVKRLNRASVNFMSILHGSIIKARTIEMKAVLDETEEELLMHALFEI 309 Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR-- 350 + I+ + E S P++G+K+K+I+ +L NA Sbjct: 310 HEEGWDSTKEIICNIELPILSTYCKVSI-----------PQRGDKKKLIDLSLKNAWHTL 358 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E +LK +L +P IE +DNS+I G + V MV K Sbjct: 359 TRYDDQKKEKPEIRVLKTLQADLSLKELPAHIECFDNSNIQGTNPVAAMVCYKNGKPSKK 418 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YR FN+ V+ +D A M ++ RR+ ++ + +P ++I+D Sbjct: 419 DYRHFNIKT--VEGPNDFASMYEIVYRRYKRMGEEG--------------LPFPTLIIID 462 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQLS A LK LN+ +I I+SIAK + E FF + L L+ + L I Sbjct: 463 GGKGQLSFACQALKDLNIYGQIPIVSIAKNLE-----ELFFPGDNDPLYLDKKSESLKLI 517 Query: 531 QRLRDEAHRFAITTHRKRRKKA--AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 Q++RDE HRFAIT HR++R K + + + GIGP + LL F TVK I +S E Sbjct: 518 QQIRDETHRFAITFHRQKRSKDALLKTEFENLVGIGPGTVKKLLTHFKTVKRIKEASIEQ 577 Query: 589 LASIEGISKKIACKIYNHFHK 609 L + G SK A ++ +K Sbjct: 578 LTPVIGNSK--ATILFQQLNK 596 >gi|87126817|gb|ABD21331.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202406|gb|ABD30216.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus NCTC 8325] Length = 570 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 176/604 (29%), Positives = 279/604 (46%), Gaps = 43/604 (7%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D +V+YVGKA L+ R++SY H + T ++ +I F VT +E E+LLLE Sbjct: 1 MKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVGEIRRFEFIVTSSETESLLLEL 59 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N+IK+ +PR+NILL+DDKS+P+I IT K K P L R G YFGP+ + + ++T Sbjct: 60 NLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLLVTRTVKQGTGKYFGPYPNAYSAQET 118 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194 L R + R + + CL + I +C GPC ++ KY + E FL+G Sbjct: 119 KKLLDRIYPYRK----CDKMPDKLCLYYHIGQCLGPCVYDVDLSKYAQMTKEITDFLNGE 174 Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRMDCFSLYHNK 251 + + + + M A+ D+E A +RD + + ++ N + D F +K Sbjct: 175 DKTILKSLEERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIRDVFGYSVDK 234 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEE 311 CIQ F G T + P+ + + ++ Sbjct: 235 GWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEFYTFIGQFYSLNQHILPKEVHVPRNLDK 294 Query: 312 TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----STEISHQMILK 367 + + K I P +G K+ +++ A NA S K E ++ Sbjct: 295 EMIQSVVDTK-------IVQPARGPKKDMVDLAAHNAKVSLNNKFELISRDESRTIKAIE 347 Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427 + + + P RIE +DNS+I G V MV + K YRK+ + VK DD Sbjct: 348 ELGTQMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPDKKNYRKYKIKT--VKGPDD 404 Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV-LKKL 486 MR V+ RR+S+++ PD++I+DGGKG ++ V +L Sbjct: 405 YKSMREVVRRRYSRVLNEG--------------LPLPDLIIVDGGKGHMNGVIDVLQNEL 450 Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546 ++ I + + K K E + E + L Y + R++DE HRFAIT HR Sbjct: 451 GLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEVHRFAITFHR 507 Query: 547 KRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 + R+K S LD+I+GIG RK LLL+SFG++K + ++ E +I GI + +A ++ Sbjct: 508 QTRQKTGLKSILDDIDGIGNKRKTLLLRSFGSIKKMKEATLEDFKNI-GIPENVAKNLHE 566 Query: 606 HFHK 609 HK Sbjct: 567 QLHK 570 >gi|218281128|ref|ZP_03487663.1| hypothetical protein EUBIFOR_00224 [Eubacterium biforme DSM 3989] gi|218217642|gb|EEC91180.1| hypothetical protein EUBIFOR_00224 [Eubacterium biforme DSM 3989] Length = 585 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 173/610 (28%), Positives = 283/610 (46%), Gaps = 45/610 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D +LYVGKA L+ R++SY H H ++ T ++S I + F VT + Sbjct: 14 LPDAPGCYIMKDENQNILYVGKAKVLKNRVRSYFHGT-HNNKTTRLVSHIRDFEFIVTGS 72 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLE N+IK+ P +NI+ DDK++PYI IT ++ + R+ + + YFGP+ Sbjct: 73 EKEALLLEINLIKKHTPPYNIMFMDDKTYPYIEITKENNF-VVRTTRNIKSKKSEYFGPY 131 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 S + + + + + F +R C PCL + + +C GPC EI ++ + Sbjct: 132 PSSQSAYEIVRLINQIFCIRKCRHIP----DSPCLYYHMHQCLGPCIHEIDPKENEKTRK 187 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 + KKFL G + + + M +A+ +E A + + AL H+ + Sbjct: 188 KIKKFLCGDTKEVMDSLQDKMLEASENLQFEKAQEIYNTIQALEHVIEKQTIDFKDRGNR 247 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F Y + Q F G+ T + F+ Q+Y P+ Sbjct: 248 DVFGYYVDSGYISFQAFFIRQGKLLERNMSI--TPLYEDEMDAFTSFIMQYYEKNVVPKE 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 IL+ + L E + +P +GEK+K+IE NA +H QK Sbjct: 306 ILVPQGTPVDILKEALNT-------NVHIPIRGEKKKLIEMVYKNAKEAHEQKFQLVFRK 358 Query: 363 QMILKDFTKK--FALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 LK +E++DNSHI G V +VV + KN YR + L Sbjct: 359 DNELKKANAMLSKIFDANIHTVEMFDNSHIQGTFNVSGLVVFKDGIPDKNSYRHYKLDG- 417 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 + D M+ V+ RR+ +L+K PD++++DGG Q+SAA+ Sbjct: 418 ---YRSDVDSMKEVIYRRYFRLLKEH--------------LPMPDLLLVDGGAAQISAAK 460 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 ++ L ++ R + + K K + + ++ + + + + R++DE HRF Sbjct: 461 EIIDMLQLDLR--VAGLVKDDKHATRA--LMDVNLNEIPIDSKSSLFFLLTRMQDEVHRF 516 Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AIT HRK R K S LD ++GIGP RK+ LL+ F ++K + +S E L+ + I + + Sbjct: 517 AITYHRKLRDKSMTKSVLDTVSGIGPKRKKELLKHFKSMKQMRLASVEQLSEV--IPEDV 574 Query: 600 ACKIYNHFHK 609 A +Y H+ Sbjct: 575 AKILYARLHE 584 >gi|332664106|ref|YP_004446894.1| UvrABC system protein C [Haliscomenobacter hydrossis DSM 1100] gi|332332920|gb|AEE50021.1| UvrABC system protein C [Haliscomenobacter hydrossis DSM 1100] Length = 602 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 184/623 (29%), Positives = 279/623 (44%), Gaps = 51/623 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRFTVT 63 +P+ PGVY+ L+ +LYVGKA NL+ R+ SY R M+ I FT+ Sbjct: 12 TIPKDPGVYRFLNEDDTILYVGKAKNLKNRLSSYFGERKDRLFRTQLMVKNAERIEFTIV 71 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE +ALLLE+++IK +PR+N++L+DD+++ YI I K P ++ R YFG Sbjct: 72 ETETDALLLESSLIKEYQPRYNVMLKDDRTYSYICI-KKEPFPRVFFTRRVIRDGSIYFG 130 Query: 124 PFASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 P+ S + L+ RT L +++ + + CL + IK C GPC G Sbjct: 131 PYTSKVRTQIIWELLRQLFPLRTCQLNLAPENIAAGKFKVCLEYHIKNCQGPCEGFEDLA 190 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 Y + + K L G + + MN K ++E A +++L A Q + Sbjct: 191 SYNAKIEQIKNILKGNFGAVIQHFKGLMNAHAEKMEFEKAQAIKEKLTAFEDYQAKSTVV 250 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 +D FS+ ++ A I G T T L + E A +L+Y + Sbjct: 251 SSSIRDVDVFSIASDEKEAYINYLRVVNGVIIHTHTQELVVNLEEEEADLLAYTIPLIRD 310 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 L+ + + TVPK GEKRK++E +L N QK Sbjct: 311 RFNSI----------APELILPFEVQMTDKTLTTTVPKIGEKRKLLELSLKNVQYYRAQK 360 Query: 356 LSTEISHQMI-------LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 + S L+ + +P IE +DNS+I G + V VV Sbjct: 361 KRDDASKTKRQSPAERILRTLQADLQMSAVPMHIECFDNSNIQGSNPVSSCVVFKNAKPS 420 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 K YR F + V +D M+ V+ RR+ +L+ + L P +VI Sbjct: 421 KQDYRHFKVKT--VIGPNDFDTMKEVVFRRYRRLLDENQPL--------------PQLVI 464 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 +DGGKGQLSAA + +L + ++TII IAK + E FF L +N + L Sbjct: 465 IDGGKGQLSAAMESIVELGLAGKMTIIGIAKRLE-----EIFFPGDSVPLYINKKSESLK 519 Query: 529 FIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 IQ+ R+EAHRFAIT HR +R K + L+ I GIG + LL FG+V+ I + Sbjct: 520 LIQQARNEAHRFAITFHRDQRSKNFIDTELNNIPGIGEKTAQKLLTHFGSVRKIREALAS 579 Query: 588 TLASIEGISKKIACKIYNHFHKN 610 L + G++K A + +F K Sbjct: 580 ELIEVLGMAK--AKVVKAYFDKE 600 >gi|116328133|ref|YP_797853.1| excinuclease ABC subunit C [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331414|ref|YP_801132.1| excinuclease ABC subunit C [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122280841|sp|Q04RU6|UVRC_LEPBJ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|122284075|sp|Q051S5|UVRC_LEPBL RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|116120877|gb|ABJ78920.1| Excinuclease ABC, subunit C [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125103|gb|ABJ76374.1| Excinuclease ABC, subunit C [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 609 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 177/619 (28%), Positives = 294/619 (47%), Gaps = 31/619 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + + PG Y G VLY+GKA NL KR+++Y+ N+ + + +I ++ + Sbjct: 13 KIKNLGISPGCYLWKSRKGEVLYIGKAKNLDKRVRNYLKENHPDIKTRALQKEIFDLDWI 72 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T TE EAL+LEA +IK+ PRFN+ +DDK +PYI ++ P +Y R Y Sbjct: 73 ATGTEKEALILEATLIKKHNPRFNVRFKDDKKYPYICVSLSESFPMVYITRKLKDNGDRY 132 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 FGP++ V + +T++ + R F +R RPCL F + RC GPC G I E Y Sbjct: 133 FGPYSDVKSTRETLDIILRIFPVRKTRQVLPLPKPRRPCLNFDMGRCLGPCQGNIPVEDY 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + + +FL G +L ++ M+ ++ + D+E A +RD L + + + + Sbjct: 193 KIVIDQVIQFLEGKKESLVGDLSIKMSASSNRMDFEKAARYRDMLQRIQNFREKQTVVSA 252 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D K+ + G+ +F ++ ++ +++IL F R +Y + Sbjct: 253 EGGDEDVIGFARKKDEGQVILLEVRGGRLETKKSFPIQGVLDAEDSEILGAFFRDYYLNA 312 Query: 298 P-CPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P I + + EET+ + ++ G++ K+ P+ G+KR +++ A NA T++ Sbjct: 313 ALVPPLIFVPADIQEETAAVMDVLQEKTGFRPKLKSPRGGDKRSLLKIAEKNAELGLTER 372 Query: 356 L--STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 L + LK+ + F+L H P IE YD SH G V V+ E K YR Sbjct: 373 LLATHYRDQTASLKEIQEMFSLEHPPHIIECYDISHFQGSEPVASGVMFVEGKPFKQGYR 432 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 K+N+ K +D M+ V+ RR ++ E +PD++++DGG Sbjct: 433 KYNIRG--YKGINDPGMIHEVISRRLQRIANEE--------------SVFPDLIVIDGGP 476 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 QL+ A + E RI +I +AK + E +F E + +M + ++ L Sbjct: 477 TQLAKACEAAMEAGAE-RIPMIGLAKKRE-----EIYFPGDNEPFIFDMNSSGMKLLRHL 530 Query: 534 RDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDEAHRF ++ HR RR K S + + IG R +LLL+ F K I ++ E L ++ Sbjct: 531 RDEAHRFGVSHHRSRRNKETMRSLIQNVPDIGLKRSKLLLRHFSGEKKIEDATKEELLAV 590 Query: 593 EGISKKIACKIYNHFHKNT 611 GI + +A KI K Sbjct: 591 PGIGENLAEKILKRIRKKE 609 >gi|312128484|ref|YP_003993358.1| excinuclease ABC subunit C [Caldicellulosiruptor hydrothermalis 108] gi|311778503|gb|ADQ07989.1| excinuclease ABC, C subunit [Caldicellulosiruptor hydrothermalis 108] Length = 593 Score = 455 bits (1171), Expect = e-125, Method: Composition-based stats. Identities = 194/609 (31%), Positives = 300/609 (49%), Gaps = 36/609 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFTVT 63 +P PGVY M D G V+YVGKA NL+ R++ Y ++ + M+ +I ++ + VT Sbjct: 9 NLPTSPGVYIMKDENGNVIYVGKAVNLKNRVRQYFQNSQDMPPKTRLMVRKIKDLDYIVT 68 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 EVEAL+LE N+IK +P++N+LLRDDK++ YI IT+ P L R YFG Sbjct: 69 DNEVEALILECNLIKEYRPKYNVLLRDDKNYQYIKITN-EMFPRLVTTRKVEKDGSRYFG 127 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSEKYM 181 P+ S +V++T+ L+ F LR+C + RPCL F I++C G C G++S E+Y Sbjct: 128 PYVSGYSVKQTVELLKSLFMLRTCKKKFPDQLGKGRPCLNFHIEKCLGVCKGDVSEEEYQ 187 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V A K LSG + E++ M + +E A +++L++L I IY Sbjct: 188 KLVERAVKVLSGKGDEIVEELKTKMFEYAENLMFEKAQEIKNKLSSLERIITKQKVIYAD 247 Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-K 297 D + + I G+ F LK D + FL Q+Y+D Sbjct: 248 DRSEDVINFAKDHTHIAIVVLIIRNGKLINKEEFVLKADED-----TFERFLEQYYSDVV 302 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P I++ E +E K YG+KVK+TVPKQGEK+++++ A NA S + Sbjct: 303 SLPNEIIIPHRIENADNIEKMIEKLYGFKVKVTVPKQGEKKQLLDMAKKNAEISLANRQR 362 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + + L L + ++IE YD S+I G VG +VV + F K YRKF + Sbjct: 363 VDDVYAEALLTLKNILGLENEIEKIESYDISNIAGADNVGTLVVFEDGRFNKEFYRKFKI 422 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + QDD ++ VL RRF+ L K PD++++DGG+ Q++ Sbjct: 423 KG--FEGQDDIRSVKEVLTRRFTNLEK---------------HGRIPDLILIDGGQNQVN 465 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 AA VL L I + + K + + G+ + + + I +++E Sbjct: 466 AALEVLNTLGFS--IPVAGMVKDDRHKTRD---LIYNGKEVGIQEYPLVYKLIYAIQEET 520 Query: 538 HRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFA+ HR+ RKK S LDEI GIG RK L ++FG++ + ++S E + I Sbjct: 521 HRFAVKFHREVRKKHLYESILDEIEGIGEKRKLKLFRTFGSIDNLRKASIEEIVKAADIP 580 Query: 597 KKIACKIYN 605 ++A KI Sbjct: 581 YEVALKIKE 589 >gi|184155101|ref|YP_001843441.1| excinuclease ABC subunit C [Lactobacillus fermentum IFO 3956] gi|227514774|ref|ZP_03944823.1| excision endonuclease subunit UvrC [Lactobacillus fermentum ATCC 14931] gi|260663643|ref|ZP_05864532.1| excinuclease ABC, C subunit [Lactobacillus fermentum 28-3-CHN] gi|238692962|sp|B2GBC9|UVRC_LACF3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|183226445|dbj|BAG26961.1| excinuclease ABC subunit C [Lactobacillus fermentum IFO 3956] gi|227086883|gb|EEI22195.1| excision endonuclease subunit UvrC [Lactobacillus fermentum ATCC 14931] gi|260551869|gb|EEX24984.1| excinuclease ABC, C subunit [Lactobacillus fermentum 28-3-CHN] gi|299783054|gb|ADJ41052.1| UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C) [Lactobacillus fermentum CECT 5716] Length = 603 Score = 455 bits (1170), Expect = e-125, Method: Composition-based stats. Identities = 176/611 (28%), Positives = 286/611 (46%), Gaps = 40/611 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M + +++YVGKA NL+ R++SY ++HT ++ M+ ++ + VT + Sbjct: 13 LPDQPGCYLMKNANAQIIYVGKAKNLKNRVRSYF-KSSHTGKVAAMVEEVADFETIVTSS 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E+ LLE +I++ +P +NI L+ +PYI IT+ + P + YFGP+ Sbjct: 72 NKESFLLEITLIQKHQPYYNIKLKRGTGYPYIKITN-ERDPIIKITGQVKKDGAYYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A E+T++ +Q+ F LR C RPCL + + +C G C E+ E+Y Sbjct: 131 PNVYAAEETVHFIQKVFPLRRCHGYQ----GRPCLYYHLGQCLGCCFKEVPEEEYAVQTK 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 K FL+G +K+++ M +A + ++E A RD+L + I N Sbjct: 187 RIKSFLNGNTAQVKKQLTARMERAAGQLEFERAAEIRDQLHYIEVTVEKQKIISNDKTPR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ Y +K IQ F + + +K P+ Sbjct: 247 DLFNFYLDKGWLSIQVFFIRQARLMKREKRLFPVVDTAEEEMTSFILQFYNRRNKLLPKE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358 ILL E + EI V + P++GEKR +++ A NA + Sbjct: 307 ILLPEGLPNQEIEEIL-------GVPVRTPQRGEKRDLLDMAKENAILSLNEKFRLLEMD 359 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 +K+ T + LP IE +D+SHI G V MVV K YRK+ L Sbjct: 360 RQKTTGAMKEITDELGLPTG-HVIEAFDHSHIQGADPVSAMVVFVNGEPAKKLYRKYKL- 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V D+ A R V+ RR+S+L+K E+ PD++++DGG Q+ A Sbjct: 418 TTVVDHADEAASTREVIFRRYSRLLKEEK--------------PMPDMIMMDGGPIQMEA 463 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ VL + + I +I + K K + + + L+ R Y +QR++DE H Sbjct: 464 AKDVL-ENQLGLNIPVIGMVKNDKHQTA-DLLYGDDAHHVNLDPRSQGFYLVQRIQDEVH 521 Query: 539 RFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HRK K + S LDEI+G+GP + LL++FG++ I+ + E + ++ GI++ Sbjct: 522 RFAITYHRKVHTKHSLSSRLDEIHGVGPRTRNKLLKAFGSINKIAVAPVEEIRAL-GINQ 580 Query: 598 KIACKIYNHFH 608 A I Sbjct: 581 TTAQLIKVSLQ 591 >gi|94985227|ref|YP_604591.1| excinuclease ABC, C subunit [Deinococcus geothermalis DSM 11300] gi|119367646|sp|Q1IZB2|UVRC_DEIGD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|94555508|gb|ABF45422.1| excinuclease ABC, C subunit [Deinococcus geothermalis DSM 11300] Length = 616 Score = 455 bits (1170), Expect = e-125, Method: Composition-based stats. Identities = 173/634 (27%), Positives = 298/634 (47%), Gaps = 49/634 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PGVY G +Y+GKA NL+ R+ + + + + T + +++ F T Sbjct: 9 LPASPGVYIFR-RGGTPIYIGKAVNLRSRVAQHFKAGGKSGKFTAL---ADSLDFITTRN 64 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 EVEAL+LEAN+IK+ +P +N+LL+DDK +P++ +T+ P L R SY+GP+ Sbjct: 65 EVEALILEANLIKQHRPHYNVLLKDDKHYPFLKLTN-EAFPMLVVTRRVLKDGASYYGPY 123 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 AV + + + F LR + + + RPCL + + RC GPC + Y + V Sbjct: 124 PDASAVRRVKHLIDTMFPLRKNSGLPMQKKPRPCLNYHMGRCLGPCVDAADPQAYAQVVE 183 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH----IQNHNDSIYNR 241 + K L G + ++ +M A +D+E A RDR+ A+ Q+ S Sbjct: 184 DVKALLEGRAAPVIARLKADMQAAARAQDFEQAARLRDRVQAVEKLFGTEQHAYVSEETD 243 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS-ESTNAQILSYFLRQFYTDKP-C 299 +D + A +Q G+ G FL + ++L F++ +YT Sbjct: 244 LDFLGVAQAGEYAMVQLFRLRGGRVVGRDKRFLVGAEGGADVGEVLGAFVQDYYTQATHV 303 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH--RSHTQKLS 357 P ILL E E+ + ++ G +V++ PK+G+K +++E A NA L Sbjct: 304 PPLILLPAEFEDAPVWSAFLSERAGRRVEMRTPKRGDKAELVEMAQRNAAAGLESELALL 363 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 L + ALP P RIE YDNS++ G + V MVV ++++R+F + Sbjct: 364 ERRGDHPGLDALREVLALPDRPWRIEGYDNSNLFGSNIVSGMVVFEGGRARRSEHRRFKV 423 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + DD A M + RR + + ++ PD++++DGG+GQ+ Sbjct: 424 RG--LDHPDDYAAMHQTITRRLTGSLADK--------------LPLPDLILIDGGRGQVH 467 Query: 478 AAQGVLKKLNVENRITIISIAKGPKR-------------SAGMEKFFVKKGEALVLNMRD 524 AA L+ +V R+ ++ +AK +R G E G L+L Sbjct: 468 AALDALRAADV--RVPLVGLAKREERIILPGRFGAQWWLETGTEV---GVGGELLLPHTH 522 Query: 525 PILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583 P L + +RDE H +A++ HR R + S D++ GIG R+ LL+ F +++ ++ Sbjct: 523 PALRVLIGVRDEVHHYAVSYHRTLRGEQMLRSVFDDLPGIGQKRRDALLEHFTSLEDLAA 582 Query: 584 SSPETLASIEGISKKIACKIYNHFHKNTSH-TPT 616 + E +A++ G++ + A + + T++ TPT Sbjct: 583 APVERIAAVPGMNLRAAQSVKKFLAERTANGTPT 616 >gi|227544991|ref|ZP_03975040.1| excision endonuclease subunit UvrC [Lactobacillus reuteri CF48-3A] gi|300909974|ref|ZP_07127434.1| excision endonuclease subunit UvrC [Lactobacillus reuteri SD2112] gi|227185034|gb|EEI65105.1| excision endonuclease subunit UvrC [Lactobacillus reuteri CF48-3A] gi|300892622|gb|EFK85982.1| excision endonuclease subunit UvrC [Lactobacillus reuteri SD2112] Length = 603 Score = 455 bits (1170), Expect = e-125, Method: Composition-based stats. Identities = 181/615 (29%), Positives = 290/615 (47%), Gaps = 42/615 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M +I +++YVGKA NL+ R++SY ++HT ++ M+S++ + VT T Sbjct: 13 LPDKPGCYLMKNINDQIIYVGKAKNLKNRVRSYF-KSSHTGKVAKMVSEVADFETIVTST 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E+ LLE +I++ +P FNI L+ +PYI IT+ + P + G YFGP+ Sbjct: 72 NKESFLLEITLIQKHQPYFNIKLKKGTGYPYIKITN-ERDPQIKIVSKIKKDGGYYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A E+T++ +Q+ + LR C RPCL + + +C G C ++ +Y E + Sbjct: 131 PNVYAAEETMHFIQKVYPLRRCNGYQ----GRPCLYYHMGQCLGACFKDVPKSEYEEQIK 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 + K FLSG +K ++ + M A ++E A RD+L + I N Sbjct: 187 KIKSFLSGNTATVKRQLTKKMQLAAENMEFERAAEIRDQLHYIEVTVEKQKIISNDKTPR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ Y +K IQ F + + + P Sbjct: 247 DLFNFYMDKGWLSIQIFFIRQARLMKREKRLFPIVDTAVEEMTSFILQFYNRRNNILPRE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358 ILL + + EI V + P +GEKR ++ A NA Sbjct: 307 ILLPKGLPNKEISEIL-------GVPVRTPVRGEKRDLLAMAHENAQLSLDEKFRLLEMD 359 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + +K+ T LP RIE +D+SHI G V MVV KN YRK+ L Sbjct: 360 QSKTTGAMKEITDALGLP-EGHRIEAFDHSHIQGADPVSAMVVFVNGEPAKNFYRKYKLK 418 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + D+ A R V+ RR+S+L+K + PD++ +DGG+ Q+ A Sbjct: 419 T-VINHADEAASTREVIRRRYSRLLKENK--------------PMPDMIFMDGGEIQMDA 463 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ VL+ +L ++ I ++ + K K + F + LN R Y +QR++DE Sbjct: 464 AKDVLENELGLD--IPVVGMVKNDKHQTA-DLLFGDDDHHINLNPRSQGFYLVQRIQDEV 520 Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K + S LDEI G+GP + LL+ +G++ I+++S + + S+ GI+ Sbjct: 521 HRFAITFHRRVHTKHSLSSRLDEIKGVGPRTRTKLLKKYGSITKIAQASVDEIHSL-GIN 579 Query: 597 KKIACKIYNHFHKNT 611 + A I KN Sbjct: 580 RPTAQLIKVSLQKNA 594 >gi|255994529|ref|ZP_05427664.1| excinuclease ABC subunit C [Eubacterium saphenum ATCC 49989] gi|255993242|gb|EEU03331.1| excinuclease ABC subunit C [Eubacterium saphenum ATCC 49989] Length = 626 Score = 454 bits (1169), Expect = e-125, Method: Composition-based stats. Identities = 187/629 (29%), Positives = 307/629 (48%), Gaps = 38/629 (6%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++PE PGVY D G+V+YVGKA NL+KR++SY + ++ +M+ QI + VT Sbjct: 9 KKLPEVPGVYLHKDSTGKVIYVGKANNLKKRVQSYFSKTVKSRKVAYMVRQITEFEYIVT 68 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 E EAL+LE N+IK+ PR+N+LL DDK++PYI I++ + P + K R YFG Sbjct: 69 ANEKEALILECNLIKKYMPRYNVLLTDDKTYPYIKISEDEEYPRITKTRRIEKDGAKYFG 128 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P++ A + ++ L + + L+ C F R CL + I +C G C G+ + E Y++ Sbjct: 129 PYSDEFAANEIMDLLNKIYRLKKCKLQKFPDGMRACLNYHIGQCDGMCIGKGNREDYLDR 188 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYN 240 + +AK FL G + +L + + M +A+ YESA ++RD + + I Sbjct: 189 IEKAKDFLQGRDKSLIHTLRKKMQEASDGMLYESAAMYRDYITSAKSILEKQSASSVGMG 248 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY-TDKPC 299 +D + F G+ G + ++ + +L F++Q Y Sbjct: 249 DIDVLVPIVTDTAIKMLVFFIRDGKTCGREIYNMQQELAEGEEALLEGFIQQNYVQGAYF 308 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P+ I+L E + LLE + G KV IT P +G+KR++++ A +A + + Sbjct: 309 PDEIVLGYELNQKELLEELLHEFAGKKVYITCPVRGKKRELLKMAKKDAEYLKGVIKTKD 368 Query: 360 ISHQMILKDFTKK----------------FALPHIPKRIEIYDNSHIMGCSAVGCMVVVG 403 + + K+ + K F +E YD S+I G V MVV Sbjct: 369 EASRERKKELSYKLGRILNEMNGGRYEYGFNDAGGEYTVEAYDISNINGIDNVAGMVVFT 428 Query: 404 ENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSW 463 K++YRKF + ++ QDD MR VL RRF++ + F Sbjct: 429 GFAPEKSRYRKFKIKS--IEGQDDYGSMREVLFRRFTRYKEG-----------APGFSDL 475 Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMR 523 PD++ +DGG+G ++AA VLK L++E I +I +AK K + V + Sbjct: 476 PDIIFMDGGRGHVNAALDVLKYLDLE--IPVIGMAKDDKHRTKELVYKVGDKFKVYPLAG 533 Query: 524 DPILYF--IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKM 580 + R+++E HR+AI+ H R + S L+ I G+GP ++ LL+ +GT++ Sbjct: 534 SDNFMLAYVGRIQEEVHRYAISYHISLRDRSMTKSILENIEGVGPKKRAALLKKWGTIEA 593 Query: 581 ISRSSPETLASIEGISKKIACKIYNHFHK 609 I ++S E L + EGI+ K+A KI F Sbjct: 594 IEKASAEELEATEGINLKLALKIKEFFKN 622 >gi|58696739|ref|ZP_00372282.1| excinuclease ABC, C subunit [Wolbachia endosymbiont of Drosophila simulans] gi|58698039|ref|ZP_00372963.1| excinuclease ABC, C subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|225629953|ref|YP_002726744.1| excinuclease ABC, subunit C [Wolbachia sp. wRi] gi|254764952|sp|C0R5B1|UVRC_WOLWR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|58535396|gb|EAL59471.1| excinuclease ABC, C subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|58537076|gb|EAL60200.1| excinuclease ABC, C subunit [Wolbachia endosymbiont of Drosophila simulans] gi|225591934|gb|ACN94953.1| excinuclease ABC, subunit C [Wolbachia sp. wRi] Length = 605 Score = 454 bits (1169), Expect = e-125, Method: Composition-based stats. Identities = 239/612 (39%), Positives = 351/612 (57%), Gaps = 26/612 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + P+ GVY+M+ +VLYVGKA NL+ R+ Y+ N + RI M+SQ+ + Sbjct: 8 QIKSSPQSCGVYKMVGDKNKVLYVGKAKNLKSRLSDYLQFENLSERIRVMLSQVIKVEIF 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-STIQGS 120 +T E+EALLLEA +IK LKP +NI+L+D K +PYI I+ KH P + K+R + Sbjct: 68 ITENEIEALLLEAQLIKSLKPLYNIVLKDGKFYPYITIS-KHDYPRIAKYRGKFKKNEFH 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 Y+GPF S AV++TI SLQ+ F LR C+D F RPC+ +QIKRCS PC +I+ + Y Sbjct: 127 YYGPFTSAAAVKQTILSLQKAFLLRVCSDQYFSSTKRPCIEYQIKRCSAPCVDKITKDDY 186 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND--SI 238 + V +A+ L G N +KE++ M + + +E+YE A I+RDR+ L IQ + S Sbjct: 187 CQSVKQARNTLLGRNKEVKEQLLFTMRKCSSEENYELAAIYRDRVKFLEQIQIQHTDFSF 246 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D FS+ ++LACI F N G+ +F + + +N +ILS FL FY Sbjct: 247 EKDADFFSIVREEDLACISVLSFRNKDNYGSTPYFAENCGDHSNDEILSTFLVNFYNSAN 306 Query: 299 CPE-NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P I + + + ++E + +K VK+ K ++R +++ N+ S QKL Sbjct: 307 IPPIQIYVPDSIVDKEIIEQALYKVAQKPVKVLHAKNKKERDLLKFVYDNSQHSLEQKLI 366 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 ++ L++ +K F LP+IPKRIE+YDNSHI G +G MVV G+ GF+K++YRKF + Sbjct: 367 DYRNNLEKLEELSKIFLLPNIPKRIEVYDNSHIFGNQQIGVMVVAGQEGFLKSEYRKFTI 426 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + DD MMR VL RRFS IK PD +++DGG G +S Sbjct: 427 KEK--FSGDDYKMMREVLTRRFSGNIK----------------GIIPDFLLIDGGPGHVS 468 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 Q VL+ LN+ + +AKGP R+AG E+F++ E L ++ ++Q LR+EA Sbjct: 469 IVQNVLEVLNI--NVPFACMAKGPDRNAGNERFYMLGREEFSLANDSKVMLYLQSLRNEA 526 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT+HRK+R K S L +I GIG RK+ L+ FG+VK IS++S + +I GIS Sbjct: 527 HRFAITSHRKKRDKQFIVSQLSKIPGIGNKRKKALMSYFGSVKNISKASLAEIQNIPGIS 586 Query: 597 KKIACKIYNHFH 608 K +A I H + Sbjct: 587 KGLAEVILKHVN 598 >gi|295099550|emb|CBK88639.1| Excinuclease ABC subunit C [Eubacterium cylindroides T2-87] Length = 598 Score = 454 bits (1169), Expect = e-125, Method: Composition-based stats. Identities = 174/615 (28%), Positives = 293/615 (47%), Gaps = 45/615 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G++LYVGKA L+ R++SY H H ++ T ++S I + F VT + Sbjct: 13 LPDQPGCYIMKDENGKILYVGKAKVLKNRVRSYFHG-VHDNKTTRLVSHIRDFEFIVTGS 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLE N+IK+ P FNI+ DDKS+PYI+I+ + R + +Y+GP+ Sbjct: 72 EKEALLLEINLIKKHTPPFNIMFMDDKSYPYIVISKDPCF-TVRVSRQVKNKKDTYYGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 S + + + + + F +R C + +PCL + + +C G C EI ++ E Sbjct: 131 PSAQSAYEIVRLINQIFPIRKCKNMP----KQPCLYYHMHQCLGYCFKEIDNKVNEENRK 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR---M 242 ++FL G + + + + M QA+ + +E A D + A+ H+ + Sbjct: 187 AIRRFLDGDAKEIIDDLTKQMQQASDELRFERAKEIYDLIQAIEHVIEKQTIDFKDRASR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F Y +K Q F G+ + ++ Q+Y P Sbjct: 247 DVFGWYEDKGYISFQGFFIRKGKLLERTLSI--EPIYEDTMEAFVSYIVQYYQKNIVPSE 304 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 IL+ E L E + + +PK+GEK+K+++ + NA +H QK Sbjct: 305 ILVPEGTPVEVLEEALDTR-------VHIPKRGEKKKLVDLVIKNAKEAHDQKFQLVFRK 357 Query: 363 QMILKDFTKKF--ALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 L+ + + +E++DNSHI G V +VV K+QYR + L Sbjct: 358 DKELEMANQHLSRIFHTKIETVEMFDNSHISGAYNVSGLVVFENGKPDKSQYRHYKLDG- 416 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 D M+ V+ RR+ +L+K + PD++++DGG Q++AA+ Sbjct: 417 ---YVSDLDSMKEVIYRRYFRLLKEGK--------------PMPDLLLVDGGALQINAAK 459 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 + + L+++ RI + K K S + + LN DP+ + + R++DE HRF Sbjct: 460 EIKEMLDLDLRI--AGLVKDDKHSTRA--LIDENLNEIPLNKEDPLFFLLTRMQDEVHRF 515 Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI+ HRK R K S LD ++GIG RK+ LL+ F ++K I +S E L+ + + + + Sbjct: 516 AISYHRKLRSKGMTQSMLDTVSGIGEKRKKQLLKHFKSMKQIRLASVEQLSEV--LPQDV 573 Query: 600 ACKIYNHFHKNTSHT 614 A +Y H++ + Sbjct: 574 ALSLYQRLHEDDKQS 588 >gi|288925944|ref|ZP_06419874.1| excinuclease ABC subunit C [Prevotella buccae D17] gi|288337368|gb|EFC75724.1| excinuclease ABC subunit C [Prevotella buccae D17] Length = 606 Score = 454 bits (1169), Expect = e-125, Method: Composition-based stats. Identities = 169/625 (27%), Positives = 303/625 (48%), Gaps = 48/625 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 MPE PG YQ D ++YVGKA NL++R+ SY H ++ ++S+I +I +TV Sbjct: 10 NMPEKPGSYQFYDEDHTIIYVGKAKNLKRRVSSYFHKEVDRYKTKVLVSKIMDISYTVVN 69 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE +IK+ PR+N+LL+D K++P I +T+ P ++K R + G+YFGP Sbjct: 70 TEEDALLLENALIKKYNPRYNVLLKDGKTYPSICVTN-EYFPRIFKTRHINKKAGTYFGP 128 Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 + + ++ + ++R + R+C + + + +PCL + I C PC + S E+ Sbjct: 129 YPHIGSMYAVLELIKRLYKPRTCRFPITKEGIAEGKYKPCLEYHIHNCGAPCINKQSYEE 188 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y E + +A++ L G + + + M + +E A + + L+ + ++ + Sbjct: 189 YQENMRQAREILKGNTRQVSKWLYDQMMKNAELLHFEIAEELKKKYTLLNEFVSKSEVVS 248 Query: 240 NRMDCFSLY-----HNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + +D ++ A I G + T+ K + ++ ++L + + Sbjct: 249 HTIDDVDVFTIVDDSTNKNAFINYIHVKNGTINQSFTYEYKRKLDESDQELLITAIPEIR 308 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 ++ E L + VP++G+K+ +++ + +N + Sbjct: 309 ERFGSHAKEVIVPFEMEWKL----------KDAEFFVPQRGDKKHLLDLSEMNGKQYKFD 358 Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 +L E ++K+ +K LP +P IE +DNS+I G AV +V Sbjct: 359 RLKQTEKLNPEQKQTRLMKELQEKLKLPKLPYHIECFDNSNISGTDAVAGCIVYKGMKPS 418 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 + YRK+N+ V DD A M+ V+ RR+S++ + + PD++I Sbjct: 419 RKDYRKYNIKT--VVGPDDYASMQEVVRRRYSRMTEEQ--------------SPLPDLII 462 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 DGGKGQ+ + V+ + ++ I I +AK + E F + + L+++ + Sbjct: 463 TDGGKGQMDVVRQVV-EGELKLNIPIAGLAKDDRHRT-NELLFGWPAQTVGLDVKSELFK 520 Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 + +++DE HR+AIT HR +R K A +S LD+I GIGP K +LL+ +VK I + + Sbjct: 521 VLTQIQDEVHRYAITFHRDKRSKHALHSELDDIKGIGPKTKEMLLKKLKSVKQIKATDNQ 580 Query: 588 TLASIEGISKKIACKIYNHFHKNTS 612 L + G SK IY HFH N + Sbjct: 581 QLIELLGPSKG--NLIYKHFHPNDT 603 >gi|295085940|emb|CBK67463.1| Excinuclease ABC subunit C [Bacteroides xylanisolvens XB1A] Length = 614 Score = 454 bits (1169), Expect = e-125, Method: Composition-based stats. Identities = 171/624 (27%), Positives = 302/624 (48%), Gaps = 47/624 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PG+YQ L+ G ++YVGKA NL+KR+ SY + + ++S+I +IR+ V Sbjct: 19 NLPEKPGIYQYLNTEGTIIYVGKAKNLKKRVYSYFSKEHEPGKTRVLVSKIADIRYIVVN 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + + P ++K R SY+GP Sbjct: 79 TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRIFKTRKVIRNGSSYYGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + ++ ++ ++ + LR+C +++ + CL + IK C+GPC G S E+ Sbjct: 138 YSHIPSMYAVLDLIKHLYPLRTCNLNLSPENIRAGKFNVCLEYHIKNCAGPCIGLQSQEE 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y++ + E K+ L G ++ + M + +E A +++ + ++ ++ + Sbjct: 198 YLKNIDEIKEILKGNTQDISRMLLEKMQTLAAEMKFEEAQKVKEKYLLIESYRSKSEVVS 257 Query: 240 NRMDCFSLYHNK----NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + ++ + N A I G TF K + ++L+ + + Sbjct: 258 AVLHNIDVFSIEEDESNSAFINYLHITNGAINQAFTFEYKKKLNESKEELLTLGIIEMRE 317 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ + L I F VP++G+K+K+++ +++N + + Sbjct: 318 RYKSQSREIIVPFELDLELNNIVFT----------VPQRGDKKKLLDLSVLNVKQYKADR 367 Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 L E ++K+ ++ L P +IE +DNS+I G AV VV + K Sbjct: 368 LKQTEKLNPEQRSMRLMKEIQQELHLERPPLQIECFDNSNIQGSDAVAACVVFKKAKPSK 427 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 YRK+N+ V DD A M+ V+ RR+ + I+ PD++I Sbjct: 428 KDYRKYNIKT--VVGPDDYASMKEVVRRRYQRAIEEN--------------SPLPDLIIT 471 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ+ + V++ + I I +AK R E F + + + + P+ Sbjct: 472 DGGKGQMEVVREVIED-ELNLAIPIAGLAK-DNRHRTSELLFGFPPQTIGIKQQSPLFRL 529 Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 + +++DE HRFAI+ HR +R K S LD I GIG K LL+ F +VK I +S E Sbjct: 530 LTQIQDEVHRFAISFHRDKRSKRQVASALDTIKGIGEKTKTALLKEFKSVKRIKETSFEE 589 Query: 589 LASIEGISKKIACKIYNHFHKNTS 612 +A+I I + A + +S Sbjct: 590 IAAI--IGEAKAKTVKEGLSNESS 611 >gi|304385120|ref|ZP_07367466.1| excision endonuclease subunit UvrC [Pediococcus acidilactici DSM 20284] gi|304329314|gb|EFL96534.1| excision endonuclease subunit UvrC [Pediococcus acidilactici DSM 20284] Length = 594 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 183/607 (30%), Positives = 294/607 (48%), Gaps = 41/607 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG YQM ++ +++YVGKA NL+ R++SY ++H + ++S+I + + VT + Sbjct: 13 LPDKPGCYQMKNLNSQIIYVGKAKNLKNRVRSYF-KSSHEGKTAKLVSEIADFDYIVTAS 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 + EA LLE +IK+ +P +NI L+ +PYI IT+ K P + + G YFGP+ Sbjct: 72 DKEAFLLEITLIKKYQPYYNIKLKKGTGYPYIKITN-EKDPRMQIVSNVRRDGGYYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A E+T++ L++ + LR C RPCL + + +C G C E+ E+Y + + Sbjct: 131 PNVYAAEETLHFLEKVYPLRRCNGYQ----GRPCLYYHMGQCLGACFKEVPKEEYDQQIA 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 + K FL G +K+ + M QA+ ++E A RD++ + I N Sbjct: 187 KIKSFLRGNVAKVKKSLQAKMQQASEAMEFERAAEIRDQIHYIEVTVEKQRIISNDRTPR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ Y +K IQ F + S+ + +K P Sbjct: 247 DLFNFYLDKGWLSIQIFFIRQSRLMKREKRLFPIASDVADEFSSFILQFYNNKNKVLPNE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358 IL+ E + + EI V + PK+GEKR ++ A NA Sbjct: 307 ILVPEGLDNQIISEIL-------GVPVRTPKRGEKRDLMNLARENAQITLEEKFRLLELD 359 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +K+ T +P RIE +D+SHI G V MVV + K YRKF L+ Sbjct: 360 ESKTVGAMKEITDALGIP-EGHRIEAFDHSHIQGADLVSAMVVFTDGKPDKKMYRKFKLN 418 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V D+ A R V+ RR+ +L+K ++L PD++++DGG QL+A Sbjct: 419 T--VDHADEAASTREVIRRRYVRLLKEHQSL--------------PDLILMDGGDVQLNA 462 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ VL + I + + K K + F + + + L+ + Y +QR++DE H Sbjct: 463 ARDVLVN-ELSLHIPVAGMVKNDKHKTA-DLIFGDQDQRVQLDPKSQGFYLVQRIQDEVH 520 Query: 539 RFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ K + S LD ING+GP + LL+ FG++ I + E + ++ GIS Sbjct: 521 RFAITFHRQMHAKNSLSSQLDSINGVGPKTRNKLLREFGSLNKIRDAKIEEIEAL-GISA 579 Query: 598 KIACKIY 604 K+A I Sbjct: 580 KVAKTIK 586 >gi|28378731|ref|NP_785623.1| excinuclease ABC subunit C [Lactobacillus plantarum WCFS1] gi|254556934|ref|YP_003063351.1| excinuclease ABC subunit C [Lactobacillus plantarum JDM1] gi|300768249|ref|ZP_07078154.1| excision endonuclease subunit UvrC [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|38258748|sp|Q88VE9|UVRC_LACPL RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|28271568|emb|CAD64473.1| excinuclease ABC, subunit C [Lactobacillus plantarum WCFS1] gi|254045861|gb|ACT62654.1| excinuclease ABC subunit C [Lactobacillus plantarum JDM1] gi|300494313|gb|EFK29476.1| excision endonuclease subunit UvrC [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 604 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 173/608 (28%), Positives = 291/608 (47%), Gaps = 43/608 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M ++ +++YVGKA NL+ R++SY ++HT + ++S+I + F VT T Sbjct: 13 LPDLPGCYLMKNLNSQIIYVGKAKNLKNRVRSYF-KSSHTGKTARLVSEIADFEFIVTST 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 + EA LLE +I++ +P FNI L+ +PYI IT+ + P + D G YFGP+ Sbjct: 72 DKEAFLLEITLIQKHQPYFNIKLKKGTGYPYIKITN-ERDPQILIVSDVRKDGGYYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A ++T+N +Q+ + LR C RPCL + + +C G C + +Y + Sbjct: 131 PNVYAAQETVNFIQKVYPLRRCHGFQ----KRPCLYYHMGQCLGACFKTVPVAEYDAQIK 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 K FL+G +K+++ + M+QA ++E A RD+L + I N Sbjct: 187 RIKSFLNGHVETVKKQLTKRMDQAAADLEFERAAELRDQLNYIEMTVEKQKIISNDNTPR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ Y +K IQ F + S + + P Sbjct: 247 DLFNFYLDKGWLSIQVFFIRQARLMKREKRLFPVVSTAPEEMTSFILQFYNRKNNVLPRE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358 +L+ ++ L +I + P++G+K+ +++ A NA Sbjct: 307 VLVPNGLDKQVLSDILGI-------PVRTPQRGQKKDLLDMAQKNARIVLEEKFRLLELD 359 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ T +P +IE +D+SHI G V MVV + K YRK+ L Sbjct: 360 ERKTTGAMQEITDALGIPAG-HKIEAFDHSHIQGADLVSAMVVFTDGQPNKKLYRKYKLR 418 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V D+ A R V+ RR+++L+K L PD++++DGG+ QL A Sbjct: 419 T--VDHADEAASTREVIRRRYTRLLKEHAAL--------------PDLILMDGGEIQLEA 462 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ VL+ +L + + ++ K + + L L+ + Y +QR++DE Sbjct: 463 AKDVLENELGIAT--PVAAMVKNDHHKTA-DLLASAGDQHLHLDPKSQGFYLLQRIQDEV 519 Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K + S LDEI G+GP + LL+ FG++ I+ +S E + S+ GI+ Sbjct: 520 HRFAITFHRQVHTKHSLSSRLDEIPGVGPKTRNKLLRKFGSMSKIAGASLEEIQSL-GIA 578 Query: 597 KKIACKIY 604 K +A + Sbjct: 579 KNVAQTVK 586 >gi|296111692|ref|YP_003622074.1| excinuclease ABC subunit C [Leuconostoc kimchii IMSNU 11154] gi|295833224|gb|ADG41105.1| excinuclease ABC subunit C [Leuconostoc kimchii IMSNU 11154] Length = 604 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 176/612 (28%), Positives = 291/612 (47%), Gaps = 42/612 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG YQM D G+++YVGKA NL+ R++SY +H + ++ I + F VT + Sbjct: 23 LPAEPGSYQMKDKNGKIIYVGKAKNLKNRVRSYF-KQDHDGKTAELVGNIVDFDFIVTNS 81 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 + EA LLE +IK+ KP +NI L+ +PYI IT K + P + + G YFGP+ Sbjct: 82 DKEAFLLENELIKKYKPYYNIRLKYGTGYPYIKIT-KERNPKMALVNEVKKDGGFYFGPY 140 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A ++T+ L++ + LR C RPCL + + +C GPC ++S E+Y E + Sbjct: 141 PNVYAAQETLRFLEKNYPLRRCNGYQ----GRPCLYYNMGQCLGPCWQDVSVEEYEEQIS 196 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRM 242 K FL G ++K+ IA M A ++E A RD+L + Sbjct: 197 RIKHFLDGNTASVKKAIAEKMQAAAATLEFERAADLRDQLKYIDETVESQRVLSKDTTPR 256 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ Y +K ++ F + I + P Sbjct: 257 DLFNYYLDKGWMTVEVFFLRQARLIRQFKQTFSVVGSEDEEVINFIQQFYSQRNIQKPNE 316 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 +L+ +L EI V + +P +GEKR +++ A NA + Sbjct: 317 VLVPHGINTKALSEIL-------AVPVRIPIRGEKRDLLDLAKKNAQIALEEKFRLMQLN 369 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ T +P RIE +D+SH G V MVV + K+ YRK+ + Sbjct: 370 EKKTTGAMREITAALNIPMG-HRIEAFDHSHTQGVEIVSAMVVFDDGVPNKDLYRKYKIK 428 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V D+ + + V+ RR+S+++K PD++++DGG+ QL A Sbjct: 429 S--VTHADEWSETQEVIRRRYSRILKEG--------------GDMPDLILMDGGEIQLHA 472 Query: 479 AQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ V + +L + + I ++ K K + K G+ +VLN + + IQR+++E Sbjct: 473 AKEVLVDELGLT-HVPIAAMVKNDKHKTA-DLIDGKTGDVVVLNKQSEGFFLIQRVQEEV 530 Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAI HR+ R K + S LD I+G+GP ++ LL+ FG++ I+ +S L +I G++ Sbjct: 531 HRFAINFHRQLRSKNSLASRLDMIDGVGPKTRQKLLREFGSLPKIAAASITELQAI-GVN 589 Query: 597 KKIACKIYNHFH 608 +K+A I+ Sbjct: 590 EKLARVIHMSLK 601 >gi|149277111|ref|ZP_01883253.1| excinuclease ABC, C subunit [Pedobacter sp. BAL39] gi|149231988|gb|EDM37365.1| excinuclease ABC, C subunit [Pedobacter sp. BAL39] Length = 600 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 181/623 (29%), Positives = 314/623 (50%), Gaps = 52/623 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVT 63 +P PGVYQ D+ ++Y+GKA +L+ R+ SY + ++S+I I FT+ Sbjct: 12 DIPHKPGVYQYWDVEDTLIYIGKAKDLRNRVGSYFIQDRQLNGKTRVLVSKIRKITFTIV 71 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE++A LLE ++IK+ +PR+NI+L+DDK++P+I+I K P +Y R+ +YFG Sbjct: 72 DTEIDAWLLENSLIKKHQPRYNIMLKDDKTYPWIII-KKEPFPRVYWTRNRVKDGSTYFG 130 Query: 124 PFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 P+ASV + ++ ++ T+ LR+C ++ + + CL +QI C GPC S Sbjct: 131 PYASVGMMHTILDLIKETYTLRTCNLPLTQKNITDGKFKVCLEYQIGNCKGPCQAYQSEP 190 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 Y + + E K+ L+G N+ + + + + A + ++E A ++ +L L Q+ + Sbjct: 191 DYDKNIEEIKEILNGKISNVIKDVKQVIRDAAAELNFEYAHQYQKKLLVLEKYQSKSTVV 250 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 +D S+ ++ A + G T T +K + T+ ++L+ + +F T Sbjct: 251 SSAITNIDVVSIASDERYAFVNYLKVMNGSIIQTQTIEIKKRLDETDEELLTLAITEFRT 310 Query: 296 D-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA------ 348 + +++ + ++ TVPK GEK+K++E + N Sbjct: 311 KFNSTSKEVIVPFDIVLED-----------SNLRFTVPKLGEKKKLLELSQKNVLFFKKE 359 Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 + +KL+ ++ + IL K + +P IE +DNS+ G V +VV + Sbjct: 360 KLNQYEKLNPDLRTERILGQLQKDLGMAKLPVHIECFDNSNFQGKYPVSAIVVFKDAKPS 419 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 K YR FN+ V+ +D A M + RR+ ++++ E+ L P ++I Sbjct: 420 KKDYRHFNVKT--VEGPNDFATMEEAVFRRYKRMLEEEDTL--------------PQLII 463 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 +DGGKGQLS+A LKKL + N++ ++ IAK + E FF L L+ + L Sbjct: 464 IDGGKGQLSSAMSSLKKLGLANKVMVVGIAKRLE-----ELFFPNDPYPLYLDKKSESLK 518 Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 IQ+LRDEAHRF IT HRK+R + + L++I GIG LL+ F +VK I ++ Sbjct: 519 LIQQLRDEAHRFGITFHRKKRDQGTLKTELEQIEGIGKTTADKLLRQFKSVKKIKAATEP 578 Query: 588 TLASIEGISKKIACKIYNHFHKN 610 L ++ ++K + +F KN Sbjct: 579 ELQTV--LNKAQVKTLLEYFEKN 599 >gi|301300877|ref|ZP_07207049.1| excinuclease ABC, C subunit [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851476|gb|EFK79188.1| excinuclease ABC, C subunit [Lactobacillus salivarius ACS-116-V-Col5a] Length = 592 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 179/618 (28%), Positives = 291/618 (47%), Gaps = 42/618 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+ PG Y M DI R++YVGKA NL+ R++SY ++H + ++S+I + Sbjct: 9 KLKLLPDLPGCYMMKDINSRIIYVGKAKNLKNRVRSYF-KSSHEGKTAKLVSEIRDFETI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 +T T+ EA LLE +I++ KP +NI L+ +PYI IT K P L G Y Sbjct: 68 ITSTDKEAFLLEITLIQKHKPYYNIKLKRGTGYPYIKIT-HEKDPQLKIVSQVKKDGGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A +T+ LQ+ + LR C RPCL + + +C G C E+ +Y Sbjct: 127 FGPYPNVYAATETLQLLQKVYPLRRCNGYQ----KRPCLYYHMGQCLGACFKEVPQSEYE 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + + + K FL+G +K+++ + M A+ ++E A RD++ + I N Sbjct: 183 KQIKKIKSFLNGNVSKIKKELEQKMETASENLEFERAAEIRDQIHYVEMTVEKQKIISND 242 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F+ Y NK +Q + ++ Sbjct: 243 NTPRDLFAFYMNKGWLSLQIFSIRQARLMKREKRLFPCIDMPEAELESFILQFYNQKNRI 302 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ IL+ ++ +L EI + + P++G+KR ++E A NA Sbjct: 303 LPKEILVPSGMDKETLSEIL-------GIPVKTPQRGQKRDLLEMAQKNAKLVLEEKFRL 355 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 E + + T LP RIE +D+SH+ G V MV + K +YRK Sbjct: 356 LELDERKTTGAMNEITDALGLP-NGHRIEAFDHSHLQGEDLVSAMVCFIDGKPEKTEYRK 414 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + L +V D+ A R V+ RR+S+L+K + NL PD++++DG Sbjct: 415 YKLK--NVDHADEAASTREVIYRRYSRLLKEKANL--------------PDLILMDGASV 458 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++AA VL + I + + K + + E + L+ + Y +QR++ Sbjct: 459 QINAAVDVLHN-QLGIDIPVAGMVKNDRHKTAD--LMTENDEKIGLDPKSEGFYLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K + S L+ I G+GP + LL+++G++K IS +S E L S+ Sbjct: 516 DEVHRFAITFHRQVRSKNSLASRLERIQGVGPKTRIKLLRNYGSLKNISAASVEDLESL- 574 Query: 594 GISKKIACKIYNHFHKNT 611 GISKK+A I + Sbjct: 575 GISKKVAQTIKLSLKNQS 592 >gi|194468445|ref|ZP_03074431.1| excinuclease ABC, C subunit [Lactobacillus reuteri 100-23] gi|194453298|gb|EDX42196.1| excinuclease ABC, C subunit [Lactobacillus reuteri 100-23] Length = 603 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 181/615 (29%), Positives = 289/615 (46%), Gaps = 42/615 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M +I +++YVGKA NL+ R++SY ++HT ++ M+S++ + VT T Sbjct: 13 LPDKPGCYLMKNINDQIIYVGKAKNLKNRVRSYF-KSSHTGKVAKMVSEVADFETIVTST 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E+ LLE +I++ +P FNI L+ +PYI IT+ + P + G YFGP+ Sbjct: 72 NKESFLLEITLIQKHQPYFNIKLKKGTGYPYIKITN-ERDPQIKIVSKIKKDGGYYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A E+T++ +Q+ + LR C RPCL + + +C G C E+ Y E + Sbjct: 131 PNVYAAEETMHFIQKVYPLRRCNGYQ----GRPCLYYHMGQCLGACFKEVPKSDYEEQIK 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 + K FLSG +K ++ + M A ++E A RD+L + I N Sbjct: 187 KIKSFLSGNTATVKRQLTKKMQLAAENMEFERAAEIRDQLHYIEVTVEKQKIISNDKTPR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ Y +K IQ F + + + P Sbjct: 247 DLFNFYMDKGWLSIQIFFIRQARLMKREKRLFPIVDTAVEEMTSFILQFYNRRNNILPRE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358 ILL + + EI V + P +GEKR ++ A NA Sbjct: 307 ILLPKGLPNKEISEIL-------GVPVRTPVRGEKRNLLAMAHENAQLSLDEKFRLLEMD 359 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + +K+ T LP RIE +D+SHI G V MVV KN YRK+ L Sbjct: 360 QSKTTGAMKEITDALGLP-EGHRIEAFDHSHIQGADPVSAMVVFINGEPAKNFYRKYKLK 418 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + D+ A R V+ RR+S+L+K + PD++ +DGG+ Q+ A Sbjct: 419 T-VINHADEAASTREVIRRRYSRLLKENK--------------PMPDMIFMDGGEIQMDA 463 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ +L+ +L ++ I ++ + K K + F + LN R Y +QR++DE Sbjct: 464 AKDILENELGLD--IPVVGMVKNDKHQTA-DLLFGDDDHHINLNPRSQGFYLVQRIQDEV 520 Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K + S LDEI G+GP + LL+ +G++ I+++S + + S+ GI+ Sbjct: 521 HRFAITFHRRVHTKHSLSSRLDEIKGVGPRTRTKLLKKYGSITKIAQASVDEIHSL-GIN 579 Query: 597 KKIACKIYNHFHKNT 611 + A I KN Sbjct: 580 RPTAQLIKVSLQKNA 594 >gi|148543889|ref|YP_001271259.1| excinuclease ABC subunit C [Lactobacillus reuteri DSM 20016] gi|184153289|ref|YP_001841630.1| excinuclease ABC subunit C [Lactobacillus reuteri JCM 1112] gi|227364797|ref|ZP_03848845.1| excinuclease ABC subunit C [Lactobacillus reuteri MM2-3] gi|325682578|ref|ZP_08162095.1| excinuclease ABC subunit C [Lactobacillus reuteri MM4-1A] gi|189038063|sp|A5VJ98|UVRC_LACRD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|229558038|sp|B2G6R8|UVRC_LACRJ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|148530923|gb|ABQ82922.1| Excinuclease ABC subunit C [Lactobacillus reuteri DSM 20016] gi|183224633|dbj|BAG25150.1| excinuclease ABC subunit C [Lactobacillus reuteri JCM 1112] gi|227070141|gb|EEI08516.1| excinuclease ABC subunit C [Lactobacillus reuteri MM2-3] gi|324978417|gb|EGC15367.1| excinuclease ABC subunit C [Lactobacillus reuteri MM4-1A] Length = 603 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 183/615 (29%), Positives = 290/615 (47%), Gaps = 42/615 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M +I +++YVGKA NL+ R++SY ++HT ++ M+S++ + VT T Sbjct: 13 LPDKPGCYLMKNINDQIIYVGKAKNLKNRVRSYF-KSSHTGKVAKMVSEVADFETIVTST 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E+ LLE +I++ +P FNI L+ +PYI IT+ + P + G YFGP+ Sbjct: 72 NKESFLLEITLIQKHQPYFNIKLKKGTGYPYIKITN-ERDPQIKIVSKIKKDGGYYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A E+T++ +Q+ + LR C RPCL + + +C G C E+ Y E + Sbjct: 131 PNVYAAEETMHFIQKVYPLRRCNGYQ----GRPCLYYHMGQCLGACFKEVPKSDYEEQIK 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 + K FLSG +K ++ + M +A ++E A RD+L + I N Sbjct: 187 KIKSFLSGNTATVKRQLTKKMQRAAENMEFERAAEIRDQLHYIEVTVEKQKIISNDKTPR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ Y +K IQ F + + + P Sbjct: 247 DLFNFYMDKGWLSIQIFFIRQARLMKREKRLFPIVDTAVEEMTSFILQFYNRRNNILPHE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358 ILL + + EI V + P +GEKR ++ A NA Sbjct: 307 ILLPKGLPNKEISEIL-------GVPVRTPVRGEKRDLLAMAHENAQLSLDEKFRLLEMD 359 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + +K+ T LP RIE +D+SHI G V MVV KN YRK+ L Sbjct: 360 QSKTTGAMKEITDALGLP-EGHRIEAFDHSHIQGADPVSAMVVFINGEPAKNFYRKYKLK 418 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + D+ A R V+ RR+S+L+K + PD++ +DGG+ Q+ A Sbjct: 419 T-VINHADEAASTREVIRRRYSRLLKENK--------------PMPDMIFMDGGEIQMDA 463 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ VL+ +L +E I ++ + K K + F + LN R Y +QR++DE Sbjct: 464 AKDVLENELGLE--IPVVGMVKNDKHQTA-DLLFGDDDHHINLNPRSQGFYLVQRIQDEV 520 Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K + S LDEI G+GP + LL+ +G++ I+++S + + S+ GI+ Sbjct: 521 HRFAITFHRRVHTKHSLSSRLDEIKGVGPRTRTKLLKKYGSITKIAQASVDEIHSL-GIN 579 Query: 597 KKIACKIYNHFHKNT 611 + A I KN Sbjct: 580 RPTAQLIKVSLQKNA 594 >gi|237716854|ref|ZP_04547335.1| excinuclease ABC subunit C [Bacteroides sp. D1] gi|262405625|ref|ZP_06082175.1| excinuclease ABC, C subunit [Bacteroides sp. 2_1_22] gi|294644430|ref|ZP_06722193.1| excinuclease ABC, C subunit [Bacteroides ovatus SD CC 2a] gi|294810424|ref|ZP_06769081.1| excinuclease ABC, C subunit [Bacteroides xylanisolvens SD CC 1b] gi|229442837|gb|EEO48628.1| excinuclease ABC subunit C [Bacteroides sp. D1] gi|262356500|gb|EEZ05590.1| excinuclease ABC, C subunit [Bacteroides sp. 2_1_22] gi|292640265|gb|EFF58520.1| excinuclease ABC, C subunit [Bacteroides ovatus SD CC 2a] gi|294442389|gb|EFG11199.1| excinuclease ABC, C subunit [Bacteroides xylanisolvens SD CC 1b] Length = 614 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 170/624 (27%), Positives = 301/624 (48%), Gaps = 47/624 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PG+YQ L+ G ++YVGKA NL+KR+ SY + + ++S+I +IR+ V Sbjct: 19 NLPEKPGIYQYLNTEGTIIYVGKAKNLKKRVYSYFSKEHEPGKTRVLVSKIADIRYIVVN 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + + P ++K R SY+GP Sbjct: 79 TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRIFKTRKVIRNGSSYYGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + ++ ++ ++ + LR+C +++ + CL + IK C+GPC G S E+ Sbjct: 138 YSHIPSMYAVLDLIKHLYPLRTCNLNLSPENIRAGKFNVCLEYHIKNCAGPCIGLQSQEE 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y++ + E K+ L G ++ + M + +E A +++ + ++ ++ + Sbjct: 198 YLKNIDEIKEILKGNTQDISRMLLEKMQTLAAEMKFEEAQKVKEKYLLIESYRSKSEVVS 257 Query: 240 NRMDCFSLYHNK----NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + ++ + N A I G TF K + ++L+ + + Sbjct: 258 AVLHNIDVFSIEEDESNSAFINYLHITNGAINQAFTFEYKKKLNESKEELLTLGIIEMRE 317 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ + L V TVP++G+K+K+++ +++N + + Sbjct: 318 RYKSQSREIIVPFELDLELN----------NVVFTVPQRGDKKKLLDLSVLNVKQYKADR 367 Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 L E ++K+ ++ L P +IE +DNS+I G AV VV + K Sbjct: 368 LKQAEKLNPEQRSMRLMKEIQQELHLERPPLQIECFDNSNIQGSDAVAACVVFKKAKPSK 427 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 YRK+N+ V DD A M+ V+ RR+ + I+ PD++I Sbjct: 428 KDYRKYNIKT--VVGPDDYASMKEVVRRRYQRAIEEN--------------SPLPDLIIT 471 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ+ + V++ + I I +AK R E + + + + P+ Sbjct: 472 DGGKGQMEVVREVIED-ELNLAIPIAGLAK-DNRHRTSELLLGFPPQTIGIKQQSPLFRL 529 Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 + +++DE HRFAI+ HR +R K S LD I GIG K LL+ F +VK I +S E Sbjct: 530 LTQIQDEVHRFAISFHRDKRSKRQVASALDTIKGIGEKTKTALLKEFKSVKRIKETSFEE 589 Query: 589 LASIEGISKKIACKIYNHFHKNTS 612 +A+I I + A + +S Sbjct: 590 IAAI--IGEAKAKTVKEGLSNESS 611 >gi|326692442|ref|ZP_08229447.1| excinuclease ABC subunit C [Leuconostoc argentinum KCTC 3773] Length = 620 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 170/612 (27%), Positives = 289/612 (47%), Gaps = 42/612 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG YQM D +G+++YVGKA NL+ R++SY +HT + ++ I + + VT + Sbjct: 39 LPAEPGSYQMKDQSGKIIYVGKAKNLKNRVRSYF-KQDHTGKTAELVQNIVDFDYIVTNS 97 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 + EA LLE +IK+ KP +NI L+ +PYI IT K + P + + G YFGP+ Sbjct: 98 DKEAFLLENELIKKYKPYYNIRLKYGTGYPYIKIT-KERDPKMAMVNEVKKDGGFYFGPY 156 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A ++T+ L++ + LR C RPCL + + +C G C E+ +Y V Sbjct: 157 PNVFAAQETLRFLEKNYPLRRCNGFQ----GRPCLYYNMGQCLGACWHEVPEAEYAAQVD 212 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRM 242 + K+FL G +K+ IA M A +E A RD+L + Sbjct: 213 QIKRFLDGDTAAVKKAIAEKMTAAAEALAFEQAADLRDQLKYIDETVESQRVLSKDTTPR 272 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ + +K ++ F + + + + P Sbjct: 273 DLFNYHLDKGWMTVEVFFLRQARLIRQFKQTFSVVGSADEEMMNFIQQFYAQRNIQKPNE 332 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 +L+ + + +L E V + +P +GEKR +++ A NA + Sbjct: 333 VLVPKGIDTAALTEAL-------GVPVRIPVRGEKRDLLDLAQKNARIALEEKFRLMQLN 385 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ T +P RIE +D+SH G V MVV + K+ YRK+ + Sbjct: 386 EKKTTGAMREITDALHIPMG-HRIEAFDHSHTQGVEIVSAMVVFEDGVPNKDLYRKYKIK 444 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V D+ A + V+ RR+S+L+K PD++++DGGK QL+A Sbjct: 445 S--VDHADEWAETQEVIRRRYSRLLKEG--------------GEMPDLILMDGGKIQLNA 488 Query: 479 AQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ V + +L + + I ++ K K + G+ + + + + IQR+++E Sbjct: 489 AKEVLVDELGLT-HVPIAAMVKNDKHKTA-DLIDGHTGKVVTFDKQSEGFFLIQRVQEEV 546 Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFA++ HR+ R K S LD I+G+GP ++ LL+ FG++ I+ +S L +I GI+ Sbjct: 547 HRFAVSFHRQLRSKNTLASRLDRIDGVGPKTRQKLLREFGSLPKIAAASIADLQAI-GIN 605 Query: 597 KKIACKIYNHFH 608 +K+A I+ Sbjct: 606 EKLARVIHLSLQ 617 >gi|99036056|ref|ZP_01315092.1| hypothetical protein Wendoof_01000062 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 605 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 235/612 (38%), Positives = 350/612 (57%), Gaps = 26/612 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + P+ GVY+M+ +VLYVGKA NL+ R+ Y+ N + RI M+ Q+ + Sbjct: 8 QIKSSPQSCGVYKMVGDKNKVLYVGKAKNLKSRLSDYLQFENLSERIRVMLLQVIKVEIF 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-STIQGS 120 +T E+EALLLEA +IK LKP +NI+L+D K +PYI I+ KH P + K+R + Sbjct: 68 ITENEIEALLLEAQLIKSLKPLYNIVLKDGKFYPYITIS-KHDYPRIAKYRGKFKKNEFH 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 Y+GPF S AV++TI SLQ+ F LR C+D F RPC+ +QIKRCS PC +I+ + Y Sbjct: 127 YYGPFTSAAAVKQTILSLQKAFLLRVCSDQYFSSTKRPCIEYQIKRCSAPCINKITKDDY 186 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND--SI 238 + V +A+ L G N +KE++ M + + +E+YE A I+RDR+ L IQ + S Sbjct: 187 CQSVKQARNTLLGRNKEVKEQLLFTMRKCSSEENYELAAIYRDRVKFLEQIQIQHTDFSF 246 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D FS+ ++LACI F N G+ +F + + +N +ILS FL FY Sbjct: 247 EKDADFFSIVREEDLACISVLSFRNKDNYGSTPYFAENCGDHSNDEILSTFLVNFYNSAN 306 Query: 299 CPE-NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P I + + + ++E + +K VK+ K ++R +++ N+ S QKL Sbjct: 307 IPPIQIYVPDSIVDKEIIEQALYKVAQKPVKVLHAKNKKERDLLKFVYDNSQHSLEQKLI 366 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 ++ L++ +K F LP+IPKRIE+YDNSHI G +G M+V G+ GF+K++YRKF + Sbjct: 367 DYRNNLEKLEELSKIFLLPNIPKRIEVYDNSHISGSQQIGVMIVAGQEGFLKSEYRKFTI 426 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + DD MMR VL RRFS IK PD +++DGG G +S Sbjct: 427 KEK--FSGDDYKMMREVLTRRFSGNIK----------------GIIPDFLLIDGGPGHVS 468 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 Q VL+ LN+ + +AKGP R+AG E+F++ E L ++ ++Q LR+EA Sbjct: 469 IVQNVLEVLNI--NVPFACMAKGPDRNAGNERFYMLGREEFSLANDSKVMLYLQSLRNEA 526 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT+HRK+R K S L +I GIG RK+ L+ FG+VK IS++S + ++ GIS Sbjct: 527 HRFAITSHRKKRDKQFIVSQLSKIPGIGNKRKKALMSYFGSVKNISKASLAEIQNVPGIS 586 Query: 597 KKIACKIYNHFH 608 K +A I + + Sbjct: 587 KGLAEVILKYVN 598 >gi|330752388|emb|CBL87340.1| UvrABC system protein C [uncultured Sphingobacteria bacterium] Length = 590 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 185/612 (30%), Positives = 298/612 (48%), Gaps = 46/612 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PGVY+ D ++LYVGKA L+KR++SY + R+ ++ +I +I FT + Sbjct: 16 IPNKPGVYEFYDANQKILYVGKAKKLKKRVQSYFQKEQTSARLKLLVKKITSIEFTTVES 75 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 + EA LLE N+IK +P++NI L+DDKS+PYI+I + IP LY R YFGP+ Sbjct: 76 DQEAFLLENNLIKEHQPKYNIQLKDDKSYPYIVIRN-EPIPRLYFTRRKVQDGSEYFGPY 134 Query: 126 ASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 V V +N + LR+C D + + + + CL + I C PCTGE S+ +Y Sbjct: 135 TGVKHVRAIVNLAKELHPLRTCKLDLSPDKISQGKYKVCLEYHIGNCLAPCTGEQSASEY 194 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI-- 238 E + +K L G N+ + + NQAT + ++E A ++ ++ + + + Sbjct: 195 NEGIDTIRKILEGKTSNIIDALIERRNQATQELNFEQAHYYQKKIEKIQEFRMPSLVENL 254 Query: 239 -YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 + D + + H ++ + I + + + ++L +R+F + Sbjct: 255 GIEQADVYQILHKEHGSAIHHIKIREYSIIFSTINQVIPKLHEDDEELLLQAIRKFTMAQ 314 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P + + + VP++GEK +I+ N + + Sbjct: 315 PLEAIPPIIAPIDLD-----------FPFAPVNVPERGEKNRILLMMKKNLMEHKFKSKT 363 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 L+ K L +PK IE +DNS+I G + V VV K+ YR FN+ Sbjct: 364 KVNQDH--LEQIQKDLRLTSLPKHIECFDNSNIQGSNPVASCVVFINGRPAKSAYRHFNV 421 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 V DD A MR +++RR++ IK E L PD++++DGGKGQL+ Sbjct: 422 KT--VDGPDDYASMREIVKRRYTGQIKKGEAL--------------PDLIVIDGGKGQLN 465 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 AA LK++ + + +I IAK + E F+ L+LN R P L IQ++R+EA Sbjct: 466 AAVEALKEVGIYQEVAVIGIAKQLE-----ELFYPNDPLPLMLNKRSPALKLIQQIRNEA 520 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HRK+R + + L+ I+GIG LL+SFG+V+ I ++ E +A + I Sbjct: 521 HRFAITFHRKKRSQHFTRTSLEVIDGIGEKTAIQLLRSFGSVEAIRNATMEDIALV--IG 578 Query: 597 KKIACKIYNHFH 608 +K A I H Sbjct: 579 QKKAQLIKAGLH 590 >gi|227891094|ref|ZP_04008899.1| excinuclease ABC subunit C [Lactobacillus salivarius ATCC 11741] gi|227866968|gb|EEJ74389.1| excinuclease ABC subunit C [Lactobacillus salivarius ATCC 11741] Length = 592 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 179/618 (28%), Positives = 291/618 (47%), Gaps = 42/618 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+ PG Y M DI R++YVGKA NL+ R++SY ++H + ++S+I + Sbjct: 9 KLKLLPDLPGCYMMKDINSRIIYVGKAKNLKNRVRSYF-KSSHEGKTAKLVSEIRDFETI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 +T T+ EA LLE +I++ KP +NI L+ +PYI IT K P L G Y Sbjct: 68 ITSTDKEAFLLEITLIQKHKPYYNIKLKRGTGYPYIKIT-HEKDPQLKIVSQVKKDGGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A +T+ LQ+ + LR C RPCL + + +C G C E+ +Y Sbjct: 127 FGPYPNVYAATETLQLLQKVYPLRRCNGYQ----KRPCLYYHMGQCLGACFKEVPQSEYE 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + + + K FL+G +K+++ + M A+ ++E A RD++ + I N Sbjct: 183 KQIKKIKSFLNGNVSKIKKELEQKMETASENLEFERAAEIRDQIHYVEMTVEKQKIISND 242 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F+ Y NK +Q + ++ Sbjct: 243 NTPRDLFAFYMNKGWLSLQIFSIRQARLMKREKRLFPCIDTPEAELESFILQFYNQKNRI 302 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ IL+ ++ +L EI + + P++G+KR ++E A NA Sbjct: 303 LPKEILIPSGMDKETLSEIL-------GIPVKTPQRGQKRDLLEMAQKNAKLVLEEKFRL 355 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 E + + T LP RIE +D+SH+ G V MV + K +YRK Sbjct: 356 LELDERKTTGAMNEITDALGLP-NGHRIEAFDHSHLQGEDLVSAMVCFIDGRPEKTEYRK 414 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + L +V D+ A R V+ RR+S+L+K + NL PD++++DG Sbjct: 415 YKLK--NVDHADEAASTREVIYRRYSRLLKEKANL--------------PDLILMDGASI 458 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++AA VL + I + + K + + E + L+ + Y +QR++ Sbjct: 459 QINAAVDVLHN-QLGIDIPVAGMVKNDRHKTAD--LMTENDEKIGLDPKSEGFYLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K + S L+ I G+GP + LL+++G++K IS +S E L S+ Sbjct: 516 DEVHRFAITFHRQVRSKNSLASRLERIQGVGPKTRIKLLRNYGSLKNISAASVEDLESL- 574 Query: 594 GISKKIACKIYNHFHKNT 611 GISKK+A I + Sbjct: 575 GISKKVAQTIKLSLKNQS 592 >gi|300214767|gb|ADJ79183.1| UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C) [Lactobacillus salivarius CECT 5713] Length = 592 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 179/618 (28%), Positives = 291/618 (47%), Gaps = 42/618 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+ PG Y M DI R++YVGKA NL+ R++SY ++H + ++S+I + Sbjct: 9 KLKLLPDLPGCYMMKDINSRIIYVGKAKNLKNRVRSYF-KSSHEGKTAKLVSEIRDFETI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 +T T+ EA LLE +I++ KP +NI L+ +PYI IT K P L G Y Sbjct: 68 ITSTDKEAFLLEITLIQKHKPYYNIKLKRGTGYPYIKIT-HEKDPQLKIVSQVKKDGGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A +T+ LQ+ + LR C RPCL + + +C G C E+ +Y Sbjct: 127 FGPYPNVYAATETLQLLQKVYPLRRCNGYQ----KRPCLYYHMGQCLGACFKEVPQSEYE 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + + + K FL+G +K+++ + M A+ ++E A RD++ + I N Sbjct: 183 KQIKKIKSFLNGNVSKIKKELEQKMKTASENLEFERAAEIRDQIHYVEMTVEKQKIISND 242 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F+ Y NK +Q + ++ Sbjct: 243 NTPRDLFAFYMNKGWLSLQIFSIRQARLMKREKRLFPCIDTPEAELESFILQFYNQKNRI 302 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ IL+ ++ +L EI + + P++G+KR ++E A NA Sbjct: 303 LPKEILVPSGMDKETLSEIL-------GIPVKTPQRGQKRDLLEMAQKNARLVLEEKFRL 355 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 E + + T LP RIE +D+SH+ G V MV + K +YRK Sbjct: 356 LELDERKTTGAMNEITDALGLP-NGHRIEAFDHSHLQGEDLVSAMVCFIDGKPEKTEYRK 414 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + L +V D+ A R V+ RR+S+L+K + NL PD++++DG Sbjct: 415 YKLK--NVDHADEAASTREVIYRRYSRLLKEKANL--------------PDLILMDGASI 458 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++AA VL + I + + K + + E + L+ + Y +QR++ Sbjct: 459 QINAAVDVLHN-QLGIDIPVAGMVKNDRHKTAD--LMTENDEKIGLDPKSEGFYLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K + S L+ I G+GP + LL+++G++K IS +S E L S+ Sbjct: 516 DEVHRFAITFHRQVRSKNSLASRLERIQGVGPKTRIKLLRNYGSLKNISAASVEDLESL- 574 Query: 594 GISKKIACKIYNHFHKNT 611 GISKK+A I + Sbjct: 575 GISKKVAQTIKLSLKNQS 592 >gi|315606902|ref|ZP_07881909.1| excision endonuclease subunit UvrC [Prevotella buccae ATCC 33574] gi|315251410|gb|EFU31392.1| excision endonuclease subunit UvrC [Prevotella buccae ATCC 33574] Length = 615 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 169/625 (27%), Positives = 303/625 (48%), Gaps = 48/625 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 MPE PG YQ D ++YVGKA NL++R+ SY H ++ ++S+I +I +TV Sbjct: 19 NMPEKPGSYQFYDEDHTIIYVGKAKNLKRRVSSYFHKEVDRYKTKVLVSKIMDISYTVVN 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE +IK+ PR+N+LL+D K++P I +T+ P ++K R + G+YFGP Sbjct: 79 TEEDALLLENALIKKYNPRYNVLLKDGKTYPSICVTN-EYFPRIFKTRHINKKAGTYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 + + ++ + ++R + R+C + + + +PCL + I C PC + S E+ Sbjct: 138 YPHIGSMYAVLELIKRLYKPRTCRFPITKEGIAEGKYKPCLEYHIHNCGAPCINKQSYEE 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y E + +A++ L G + + + M + +E A + + L+ + ++ + Sbjct: 198 YQENMRQAREILKGNTRQVSKWLYDQMMKNAELLHFEIAEELKKKYTLLNEFVSKSEVVS 257 Query: 240 NRMDCFSLY-----HNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + +D ++ A I G + T+ K + ++ ++L + + Sbjct: 258 HTIDDVDVFTIVDDSTNKNAFINYIHVKNGTINQSFTYEYKRKLDESDQELLITAIPEIR 317 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 ++ E L + VP++G+K+ +++ + +N + Sbjct: 318 ERFGSHAKEVIVPFEMEWKL----------KDAEFFVPQRGDKKHLLDLSEMNGKQYKFD 367 Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 +L E ++K+ +K LP +P IE +DNS+I G AV +V Sbjct: 368 RLKQAEKLNPEQKQTRLMKELQEKLKLPKLPYHIECFDNSNISGTDAVAGCIVYKGMKPS 427 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 + YRK+N+ V DD A M+ V+ RR+S++ + + PD++I Sbjct: 428 RKDYRKYNIKT--VVGPDDYASMQEVVRRRYSRMTEEQ--------------SPLPDLII 471 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 DGGKGQ+ + V+ + ++ I I +AK + E F + + L+++ + Sbjct: 472 TDGGKGQMDVVRQVV-EGELKLNIPIAGLAKDDRHRT-NELLFGWPAQTVGLDVKSELFK 529 Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 + +++DE HR+AIT HR +R K A +S LD+I GIGP K +LL+ +VK I + + Sbjct: 530 VLTQIQDEVHRYAITFHRDKRSKHALHSELDDIKGIGPKTKEMLLKKLKSVKQIKATDNQ 589 Query: 588 TLASIEGISKKIACKIYNHFHKNTS 612 L + G SK IY HFH N + Sbjct: 590 QLIELLGPSKG--NLIYKHFHPNDT 612 >gi|42520057|ref|NP_965972.1| excinuclease ABC, C subunit [Wolbachia endosymbiont of Drosophila melanogaster] gi|81652861|sp|Q73IK6|UVRC_WOLPM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|42409794|gb|AAS13906.1| excinuclease ABC, C subunit [Wolbachia endosymbiont of Drosophila melanogaster] Length = 605 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 236/612 (38%), Positives = 350/612 (57%), Gaps = 26/612 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + P+ GVY+M+ +VLYVGKA NL+ R+ Y+ N + RI M+ Q+ + Sbjct: 8 QIKSSPQSCGVYKMVGDKNKVLYVGKAKNLKSRLSDYLQFENLSERIRVMLLQVIKVEIF 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-STIQGS 120 +T E+EALLLEA +IK LKP +NI+L+D K +PYI I+ KH P + K+R + Sbjct: 68 ITENEIEALLLEAQLIKSLKPLYNIVLKDGKFYPYITIS-KHDYPRIAKYRGKFKKNEFH 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 Y+GPF S AV++TI SLQ+ F LR C+D F RPC+ +QIKRCS PC +I+ + Y Sbjct: 127 YYGPFTSAAAVKQTILSLQKAFLLRVCSDQYFSSTKRPCIEYQIKRCSAPCINKITKDDY 186 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND--SI 238 + V +A+ L G N +KE++ M + + +E+YE A I+RDR+ L IQ + S Sbjct: 187 CQSVKQARNTLLGRNKEVKEQLLFTMRKCSSEENYELAAIYRDRVKFLEQIQIQHTDFSF 246 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D FS+ ++LACI F N G+ +F + + +N +ILS FL FY Sbjct: 247 EKDADFFSIVREEDLACISVLSFRNKDNYGSTPYFAENCGDHSNDEILSTFLVNFYNSAN 306 Query: 299 CPE-NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P I + + + ++E + +K VK+ K ++R +++ N+ S QKL Sbjct: 307 IPPIQIYVPDSIVDKEIIEQALYKVAQKPVKVLHAKNKKERDLLKFVYDNSQHSLEQKLI 366 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 ++ L++ +K F LP+IPKRIE+YDNSHI G +G M+V G+ GF+K++YRKF + Sbjct: 367 DYRNNLEKLEELSKIFLLPNIPKRIEVYDNSHISGSQQIGVMIVAGQEGFLKSEYRKFTI 426 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + DD MMR VL RRFS IK PD +++DGG G +S Sbjct: 427 KEK--FSGDDYKMMREVLTRRFSGNIK----------------GIIPDFLLIDGGPGHVS 468 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 Q VL+ LN+ + +AKGP R+AG E+F++ E L ++ ++Q LR+EA Sbjct: 469 IVQNVLEVLNI--NVPFACMAKGPDRNAGNERFYMLGREEFSLANDSKVMLYLQSLRNEA 526 Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT+HRK+R K S L +I GIG RK+ L+ FG+VK ISR+S + ++ GIS Sbjct: 527 HRFAITSHRKKRDKQFIVSQLSKIPGIGNKRKKALMSYFGSVKNISRASLAEIQNVPGIS 586 Query: 597 KKIACKIYNHFH 608 K +A I + + Sbjct: 587 KGLAEVILKYVN 598 >gi|312623305|ref|YP_004024918.1| excinuclease ABC subunit C [Caldicellulosiruptor kronotskyensis 2002] gi|312203772|gb|ADQ47099.1| excinuclease ABC, C subunit [Caldicellulosiruptor kronotskyensis 2002] Length = 593 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 194/608 (31%), Positives = 301/608 (49%), Gaps = 36/608 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFTVTC 64 +P PGVY M D G V+YVGKA NL+ R++ Y ++ + M+ +I ++ + VT Sbjct: 10 LPTSPGVYIMKDENGNVIYVGKAVNLRNRVRQYFQNSQDMLPKTRLMVKKIKDLDYIVTD 69 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 EVEAL+LE N+IK +P++N+LLRDDK++ YI IT+ P L R YFGP Sbjct: 70 NEVEALILECNLIKEYRPKYNVLLRDDKNYQYIKITN-EMFPRLVTTRKVEKDGSRYFGP 128 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSEKYME 182 + S +V++T+ L+ F LR+C + RPCL F I++C G C G++S E+Y + Sbjct: 129 YVSGYSVKQTVELLKSLFMLRTCKKKFPDQLGKGRPCLNFHIEKCLGVCKGDVSEEEYQK 188 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--- 239 V A K LSG + E++ M + +E A +++L++L I IY Sbjct: 189 LVERAVKVLSGKGDEIVEELKAKMFEYAENLMFEKAQEIKNKLSSLEQIITKQKVIYADD 248 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-KP 298 D + + I G+ F LK + + FL Q+Y D Sbjct: 249 RSEDVINFAKDHTHIAIVVLIIRNGKLINKEEFVLKAEED-----TFERFLEQYYADVVS 303 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P+ I++ E E +E K YG+KVK+T+PKQGEK+++++ A NA S + Sbjct: 304 LPKEIIIPHEIENVYNIEKMIEKLYGFKVKVTIPKQGEKKQLLDMAKKNAEISLANRQRV 363 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + + L L + ++IE YD S+I G VG +VV + F K YRKF + Sbjct: 364 DDVYAEALLTLKNILGLENEIEKIESYDISNIAGADNVGTLVVFEDGRFNKEFYRKFKIK 423 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + QDD ++ VL RRF+ L K PD++++DGG+ Q++A Sbjct: 424 G--FEGQDDIRSVKEVLTRRFTNLEK---------------HGRIPDLILIDGGQNQVNA 466 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A VL L I + + K K + G+ + + + I +++E H Sbjct: 467 ALEVLNTLGFS--IPVAGMVKDDKHKTRD---LIYNGKEVGIQEYPLVYKLIYAIQEETH 521 Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFA+ HR+ RKK S LDEI GIG RK L ++FG++ + ++S E + I Sbjct: 522 RFAVKFHREVRKKHLYESILDEIEGIGEKRKLKLFRTFGSIDNLRKASIEEIVKAADIPY 581 Query: 598 KIACKIYN 605 ++A KI Sbjct: 582 EVALKIKE 589 >gi|332638265|ref|ZP_08417128.1| excinuclease ABC subunit C [Weissella cibaria KACC 11862] Length = 597 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 168/613 (27%), Positives = 288/613 (46%), Gaps = 45/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG YQM DI G+++YVGKA NL+ R++SY + HT + ++ I + F VT + Sbjct: 13 LPDLPGSYQMKDINGKIIYVGKAKNLKNRVRSYF-KSEHTGKTAQLVENIADFDFIVTSS 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE +I++ +P +NI L+ +PYI IT P L D YFGP+ Sbjct: 72 EKESLLLEITLIQKYQPYYNIRLKRGTGYPYIKIT-HEADPKLELANDVKEDGAQYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A ++T++ LQ+ + LR C RPCL + +C G C ++ +Y++ + Sbjct: 131 PNVYAAQETLHFLQKVYPLRRCNGYQ----GRPCLYANMGQCLGACYRQVPFTEYLDQIK 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 + + FL G + + + MN A+ ++E A RD+L + I Sbjct: 187 KIQHFLDGDTKEVTKVLNEKMNTASENLEFERAADLRDQLKFIETTVEKQKIISKDGTPR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ Y +K +Q F + + + P+ Sbjct: 247 DLFNFYMDKGWLSVQVFFVRQARLMKREKRTFAIVESAEEEMTSFILQFYNRKNAVLPKE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358 IL+ ++ + ++ V + P++GEKR +++ A NA Sbjct: 307 ILVPAGVDKAMISDVLH-------VPVRTPQRGEKRDLLDLAEKNAKIVLDEKFRLMEMN 359 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ +P RIE +D+SH G V MVV + KN+YR Sbjct: 360 ESKTSGAMQEIADALGIP-EIHRIEAFDHSHTQGAEMVSAMVVFEDGVPNKNKYR--KYK 416 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ D+ A V+ RR+++L+K PD++++DGG QL+A Sbjct: 417 NKTVEHADERAETMEVIRRRYTRLLKEH--------------AEMPDLILMDGGVIQLNA 462 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRLRDE 536 A+ V++ +L ++ I + ++ K + ++GE + L+ + + +QR++DE Sbjct: 463 AREVIEDELGLD--IPVAAMVKNDQHKTAD--LLREEGEPHVNLDPKSQGFFLLQRIQDE 518 Query: 537 AHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 HRF IT HR+ R K++ S LDEI G+GP ++ LL FG++ I+ +S L + G+ Sbjct: 519 VHRFVITFHRQLRSKSSLGSKLDEIAGVGPKTRQKLLAKFGSLNKIANASIADLREV-GV 577 Query: 596 SKKIACKIYNHFH 608 S+K+A I Sbjct: 578 SEKVANAIKISLQ 590 >gi|227432501|ref|ZP_03914486.1| excinuclease ABC subunit C [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351728|gb|EEJ41969.1| excinuclease ABC subunit C [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 599 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 172/616 (27%), Positives = 291/616 (47%), Gaps = 40/616 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG YQM D G+++YVGKA NL+ R++SY +H + ++S+I + F VT + Sbjct: 16 LPSEPGSYQMKDQNGKIIYVGKAKNLKNRVRSYF-KQDHDGKTAELVSKIVDFDFIVTNS 74 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 + EA LLE +IK+ KP +NI L+ +PYI IT K + P + + G YFGP+ Sbjct: 75 DKEAFLLENELIKKYKPYYNIRLKYGTGYPYIKIT-KERNPKMALVNEVKKDGGFYFGPY 133 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A ++T+ LQ+ + LR C RPCL + + +C G C ++S ++Y + + Sbjct: 134 PNVYAAQETLRFLQKNYPLRRCNGPQ----GRPCLYYNMGQCLGACFRDVSVQEYNDQIS 189 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRM 242 KKFL G +K++I M A ++E A RD+L + Sbjct: 190 RIKKFLDGDTKIVKKQIVEKMQVAASSLEFERAADLRDQLKYIDETVESQRVLSKDTTPR 249 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ Y +K ++ F + E+ + P Sbjct: 250 DLFNYYMDKGWMTVEVFFLRQARLIRQFKRTFSIVGEADEEVSSFIQQFYSQKNIQKPRE 309 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358 +L+ + + +L + +V + +P +GEKR++++ A NA Sbjct: 310 VLVPKGIDTKALSAVL-------EVPVRIPVRGEKRELLDLAAKNARIVLEEKFRLMQLN 362 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +K+ T +P RIE +D+SH G V MVV + K +YRK+ + Sbjct: 363 ERKTTGAMKEITDALQIPMG-HRIEAFDHSHTQGVEIVSAMVVFDDGIPNKTEYRKYKIK 421 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 ++ A + V+ RR+S+L++ + +PD++++DGG+ QL A Sbjct: 422 ST--DHANEWAETQEVIRRRYSRLLRED--------------GDFPDLILMDGGEIQLHA 465 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 AQ VL+ I I ++ K K + + + L+ + + IQR+++E H Sbjct: 466 AQEVLEDELGLTNIPIAAMVKNDKHKTA-DLIDGVTNQIVTLDKQSEGFFLIQRVQEEVH 524 Query: 539 RFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAI+ HR+ R K + S LD I G+GP ++ LL+ FG++ I+ +S L I GI++ Sbjct: 525 RFAISFHRQLRSKNSLASRLDTIQGVGPKTRQKLLREFGSLPKITAASVSDLVDI-GINE 583 Query: 598 KIACKIYNHFHKNTSH 613 K+A I+ + Sbjct: 584 KLARVIHLSLSAGDNS 599 >gi|259046646|ref|ZP_05737047.1| excinuclease ABC, C subunit [Granulicatella adiacens ATCC 49175] gi|259036811|gb|EEW38066.1| excinuclease ABC, C subunit [Granulicatella adiacens ATCC 49175] Length = 592 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 166/617 (26%), Positives = 292/617 (47%), Gaps = 41/617 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+ PG Y M + ++Y+GKA NL+ R++SY T + ++S+I++ + Sbjct: 9 KLKNLPDLPGCYIMRNSNDEIIYIGKAKNLKNRVRSYFRGALDT-KTEKLVSEIHHFEYI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT T E+LLLE N+IK+ +P +NI L+ +PY+ IT + P L G Y Sbjct: 68 VTKTNKESLLLEINLIKKYQPYYNIKLKQGTMYPYLKIT-SERDPQLVISHKVEKDGGIY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A T +Q+ + LR C ++ TR C + + +C G C EIS ++Y Sbjct: 127 FGPYPNVTAATSTQQLIQKIYPLRKCG----KNETRACFYYHLGQCIGCCDHEISEDEYK 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 + + ++FL+G +K+ + + M +A+ + ++E A+ +RD++ + + + Sbjct: 183 TQIKKIQRFLNGDVKAIKDDLNQRMLEASERLEFEKAMDYRDQIHYIEATVEKQNIMSSD 242 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 + D F+ + ++ IQ + + + + Sbjct: 243 FTNRDVFAYFVDRGWISIQVFLLRQSTIIKREAAMFPIYDQIEDEVLSFIIQFYEDQNHI 302 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P+ IL+ + + L E K PK+G K+++++ A N+ S +K Sbjct: 303 LPKEILVPDALDIDLLSETLGVKAVS-------PKRGSKKRMLDLATQNSEISLLEKFRR 355 Query: 359 EI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 E L + ++ L + IE +D+S+I G + V MVV + + YRK Sbjct: 356 EEQSQLKTLGALDELSQALGLEKLS-VIESFDHSNIQGTNPVSAMVVFRDGKPDRKHYRK 414 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + V + A + V+ RR+S+L++ + +L PD+V++DGGK Sbjct: 415 FKVKT--VLGSHEFATTQEVIRRRYSRLLREKADL--------------PDLVLMDGGKI 458 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q+ AA VL+ + I + + K K + +K + L+ + IQR++ Sbjct: 459 QMKAAMEVLED-ELGLSIPVCGMVKNDKHKTAS-LIYGEKFTPIELDRKGQAFQLIQRVQ 516 Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 +E HRFAIT HR+ R K +S L+ I+G+GP ++ LL F T I +S E L I Sbjct: 517 EEVHRFAITFHRQVRGKNTFSSRLELIDGVGPKTRKKLLSHFKTTTAIKNASVEELRKI- 575 Query: 594 GISKKIACKIYNHFHKN 610 GIS+K+A I F Sbjct: 576 GISEKVASNIITTFQNE 592 >gi|308180923|ref|YP_003925051.1| excinuclease ABC subunit C [Lactobacillus plantarum subsp. plantarum ST-III] gi|308046414|gb|ADN98957.1| excinuclease ABC subunit C [Lactobacillus plantarum subsp. plantarum ST-III] Length = 604 Score = 453 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 172/608 (28%), Positives = 290/608 (47%), Gaps = 43/608 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M ++ +++YVGKA NL+ R++SY ++HT + ++S+I + F VT T Sbjct: 13 LPDLPGCYLMKNLNSQIIYVGKAKNLKNRVRSYF-KSSHTGKTARLVSEIADFEFIVTST 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 + EA LLE +I++ +P FNI L+ +PYI IT+ + P + D G YFGP+ Sbjct: 72 DKEAFLLEITLIQKHQPYFNIKLKKGTGYPYIKITN-ERDPQILIVSDVRKDGGYYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A ++T+N +Q+ + LR C RPCL + + +C G C + +Y + Sbjct: 131 PNVYAAQETVNFIQKVYPLRRCHGFQ----KRPCLYYHMGQCLGACFKTVPVAEYDAQIK 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 K FL+G +K+++ + M+QA ++E A RD+L + I N Sbjct: 187 RIKSFLNGHVETVKKQLTKRMDQAAADLEFERAAELRDQLNYIEMTVEKQKIISNDNTPR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ Y +K IQ F + S + + P Sbjct: 247 DLFNFYLDKGWLSIQVFFIRQARLMKREKRLFPVVSTAPEEMTSFILQFYNRKNNVLPRE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358 +L+ ++ L +I + P++G+K+ +++ A NA Sbjct: 307 VLVPNGLDKQVLSDILGI-------PVRTPQRGQKKDLLDMAQKNARIVLEEKFRLLELD 359 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 +++ T +P +IE +D+SHI G V MVV + K YRK+ L Sbjct: 360 ARKTTGAMQEITDALGIPAG-HKIEAFDHSHIQGADLVSAMVVFTDGQPNKKLYRKYKLR 418 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V D+ A R V+ RR+++L+K L PD++++DGG+ QL A Sbjct: 419 T--VDHADEAASTREVIRRRYTRLLKEHAAL--------------PDLILMDGGEIQLEA 462 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ VL+ +L + + ++ K + + L L+ + Y +QR++DE Sbjct: 463 AKDVLENELGIAT--PVAAMVKNDHHKTA-DLLASAGDQHLHLDPKSQGFYLLQRIQDEV 519 Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K + S LDEI G+GP + LL+ FG++ I+ +S E + S+ GI+ Sbjct: 520 HRFAITFHRQVHTKHSLSSRLDEIPGVGPKTRNKLLRKFGSMSKIAGASLEEIQSL-GIA 578 Query: 597 KKIACKIY 604 K +A + Sbjct: 579 KNVAQTVK 586 >gi|255534582|ref|YP_003094953.1| Excinuclease ABC subunit C [Flavobacteriaceae bacterium 3519-10] gi|255340778|gb|ACU06891.1| Excinuclease ABC subunit C [Flavobacteriaceae bacterium 3519-10] Length = 611 Score = 453 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 183/623 (29%), Positives = 298/623 (47%), Gaps = 49/623 (7%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + +P PGVY+ D ++LYVGKA +L+KR+ SY + N +R M+++I+ + Sbjct: 20 LQLKTLPSEPGVYRYYDKNDQLLYVGKAKHLKKRVLSYFNKNLPGYRTRIMVAKIHRLET 79 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T+ +E +ALLLE N+IK +P +N++L+DDKS+P+I I P ++ R Sbjct: 80 TIVPSEYDALLLENNLIKEHQPFYNVMLKDDKSYPWICI-KNEDFPRIFLTRTMIKDGSE 138 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEI 175 Y+GP+A V + +++++ + LR+C + + + CL F IK C GPC Sbjct: 139 YYGPYARVRPAKVLLDTIKHIYKLRTCTLNLSPPKIAEGKYKVCLEFHIKNCQGPCEMLE 198 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 S E Y + + + G KE + M + +E A + ++RL L + Q+ + Sbjct: 199 SKEDYDLKIDAIRGIIKGDFKRAKEYLVNQMMKYAENLQFEDAHVVKERLDMLENYQHKH 258 Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 + +D F + ++ A + G + T +K + ++ IL + + Sbjct: 259 TVVNPNIDDVDVFGMTSDETAAYVNYFKIQNGNIIQSFTTEIKKILDESDEDILEEAMIE 318 Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 + +L VK+ VPK G+K++I+E + NA Sbjct: 319 IRQKFNS----------DSKEILLPFHLTLEIPNVKLIVPKVGDKKRIVELSEKNAKEYR 368 Query: 353 TQKL------STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 +KL E I+ + K +P P+ IE +DNS+I G + V VV Sbjct: 369 IEKLKAVQIVDPERHTNRIMAEMQKLLRMPVEPRHIEGFDNSNIQGTNPVSACVVFKNGK 428 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 K YR F HP V+ +D A M V+ RR+ +L++ P + Sbjct: 429 PSKADYRIF--HPKTVEGANDFATMEEVIHRRYRRLLEEN--------------SPLPQL 472 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526 +++DGGKGQLS+A LK L + +ITII IAK + E +F + L L+ + Sbjct: 473 ILIDGGKGQLSSAVKSLKLLGLYGKITIIGIAKRLE-----EIYFPEDPIPLYLDKKSET 527 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 L +QR+RDE+HRF + HR RRK + S L+EI GIG LLL +VK + SS Sbjct: 528 LKILQRVRDESHRFGVKHHRTRRKNSTIKSELEEIPGIGEKAVDLLLSKLKSVKRVKESS 587 Query: 586 PETLASIEGISKKIACKIYNHFH 608 ETL I G S+ ++ +F+ Sbjct: 588 RETLEEILGKSRG--GLVWEYFN 608 >gi|295398356|ref|ZP_06808397.1| excision endonuclease subunit UvrC [Aerococcus viridans ATCC 11563] gi|294973396|gb|EFG49182.1| excision endonuclease subunit UvrC [Aerococcus viridans ATCC 11563] Length = 625 Score = 453 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 164/610 (26%), Positives = 297/610 (48%), Gaps = 43/610 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M + +++Y+GKA NL+ R++SY + HT + ++S+I++ + VT T Sbjct: 13 VPDLPGCYIMKNADDQIIYIGKAKNLKNRVRSYF-KSTHTGKTAQLVSEIDHFDYIVTQT 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 + E+LLLE N+IK+ +P +NI L+ +PYI IT+ + P + G YFGP+ Sbjct: 72 DKESLLLEINLIKKHQPHYNIRLKHGTMYPYIKITN-ERDPQMIITSVVEDDGGEYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 ++ A T++ LQ+T+ LR C ++ R C + + +C GPC E+ E+Y Sbjct: 131 PNIYAASGTLDLLQKTYPLRKCG----KNEKRACFYYHLGQCIGPCDHEVPVEEYKAQKA 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNRM 242 ++FL+G N+K+ + M A+ +E A +RD++ + + + YN Sbjct: 187 RIRRFLNGDVKNIKDDLKGKMTAASEDLQFERAAEYRDQINYIEQTVEPQNIMSKQYNDR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ Y +K IQ + S+ + P+ Sbjct: 247 DVFAFYFDKGWISIQVFLLRQFSIIKRDSALFPVYSDPEEELTSYIVQFYQEANHTKPKE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358 IL+ + + + K PK+G+K K+++ A NA +H K Sbjct: 307 ILVPGNLDNELIADTVEVKVST-------PKRGDKHKMLQMAQRNAKIAHLDKFRLLAMK 359 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E + ++ LP++ IE +D+S+I G + V MV + K+ YRK+ + Sbjct: 360 EQKTTGAIDQLSEALNLPYLK-VIESFDHSNIQGTNPVSAMVAYEDGRPNKSMYRKYKIK 418 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V ++ A + V+ RR+ +L+K + +PD++++DGG +++A Sbjct: 419 T--VDGSNEFATTQEVIRRRYGRLLKED--------------GDFPDLILMDGGAIEVNA 462 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ VL+ +L ++ I + + K K F + L+ R + +QR++DE Sbjct: 463 AREVLEDELGLD--IPVAGMVKDDKHRTAN-LIFGDPLTIIPLDPRSQAFHLLQRIQDEV 519 Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HRK R K ++ S LD I+G+GP + +L+ F T+K + ++ + ++ I Sbjct: 520 HRFAITFHRKTRSKQSFTSKLDGIDGVGPKTRTKVLRHFKTMKAVREATIADIQAL-SIP 578 Query: 597 KKIACKIYNH 606 +K+A +I+ Sbjct: 579 EKVAVEIHKA 588 >gi|222528390|ref|YP_002572272.1| excinuclease ABC subunit C [Caldicellulosiruptor bescii DSM 6725] gi|222455237|gb|ACM59499.1| excinuclease ABC, C subunit [Caldicellulosiruptor bescii DSM 6725] Length = 593 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 192/612 (31%), Positives = 300/612 (49%), Gaps = 36/612 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRF 60 +P PGVY M D G V+YVGKA NL+ R++ Y ++ + M+ +I ++ + Sbjct: 6 KLSNLPTSPGVYIMKDENGNVIYVGKAVNLRNRVRQYFQNSQDMPSKTRLMVRKIKDLDY 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT EVEAL+LE N+IK +P++N+LLRDDK++ YI IT+ P L R Sbjct: 66 IVTDNEVEALILECNLIKEYRPKYNVLLRDDKNYQYIKITN-EMFPRLVTTRKVEKDGSR 124 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S +V++T+ L+ F LR+C + RPCL F I++C G C G++S E Sbjct: 125 YFGPYVSGYSVKQTVELLKSLFMLRTCKKKFPDQLGKGRPCLNFHIEKCLGVCKGDVSEE 184 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + V A K LSG + E++ M + +E A +++L++L I I Sbjct: 185 EYQKLVERAVKVLSGKGDEIVEELKAKMFEYAENLMFEKAQEIKNKLSSLEQIITKQKVI 244 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 Y D + ++ I G+ F LK + + FL Q+Y Sbjct: 245 YADDRSEDVINFAKDQTHIAIVVLIIRNGKLINKEEFVLKAEED-----TFERFLEQYYA 299 Query: 296 DK-PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 D P+ I++ E E +E K YG+KVK+ +PKQGEK+++++ A NA S Sbjct: 300 DVLSLPKEIIIPHEIENFDNIEKMIEKLYGFKVKVIIPKQGEKKQLLDMAKKNAEISLAN 359 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + + + L L + ++IE YD S+I G VG +VV + F K YRK Sbjct: 360 RQRVDDVYAEALLTLKSILGLENEIEKIESYDISNIAGADNVGTLVVFEDGRFNKEFYRK 419 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + + QDD ++ VL RRF+ L K PD++++DGG+ Sbjct: 420 FKIKG--FEGQDDIRSVKEVLTRRFTNLEK---------------HGRIPDLILIDGGQN 462 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++AA VL L I + + K + + G+ + + I ++ Sbjct: 463 QVNAALEVLNTLGF--FIPVAGMVKDDRHKTRD---LIYNGKEAGIQEYPLVYKLIYAIQ 517 Query: 535 DEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 +E HRFA+ HR+ RKK S LDEI GIG RK L ++FG++ + ++S E + Sbjct: 518 EETHRFAVKFHREVRKKHLYESILDEIEGIGEKRKLKLFRTFGSIDNLRKASIEEIVKAA 577 Query: 594 GISKKIACKIYN 605 I ++A KI Sbjct: 578 DIPYEVALKIKE 589 >gi|116617637|ref|YP_818008.1| excinuclease ABC subunit C [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096484|gb|ABJ61635.1| Excinuclease ABC subunit C [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 599 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 171/616 (27%), Positives = 291/616 (47%), Gaps = 40/616 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG YQM D G+++YVGKA NL+ R++SY +H + ++S+I + F VT + Sbjct: 16 LPSEPGSYQMKDQNGKIIYVGKAKNLKNRVRSYF-KQDHDGKTAELVSKIVDFDFIVTNS 74 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 + EA LLE +IK+ KP +NI L+ +PYI IT K + P + + G YFGP+ Sbjct: 75 DKEAFLLENELIKKYKPYYNIRLKYGTGYPYIKIT-KERNPKMALVNEVKKDGGFYFGPY 133 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A ++T+ L++ + LR C RPCL + + +C G C ++ ++Y + + Sbjct: 134 PNVYAAQETLRFLEKNYPLRRCNGPQ----GRPCLYYNMGQCLGACFRDVPVQEYNDQIS 189 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRM 242 KKFL G +K++IA M A ++E A RD+L + Sbjct: 190 RIKKFLDGDTKIVKKQIAEKMQVAASSLEFERAADLRDQLKYIDETVESQRVLSKDTTPR 249 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ Y +K ++ F + E+ + P Sbjct: 250 DLFNYYMDKGWMTVEVFFLRQARLIRQFKRTFSIVGEADEEVSSFIQQFYSQKNIQKPRE 309 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358 +L+ + + +L + +V + +P +GEKR++++ A NA Sbjct: 310 VLVPKGIDTKALSAVL-------EVPVRIPVRGEKRELLDLAAKNARIVLEEKFRLMQLN 362 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +K+ T +P RIE +D+SH G V MVV + K +YRK+ + Sbjct: 363 ERKTTGAMKEITDALQIPMG-HRIEAFDHSHTQGVEIVSAMVVFDDGIPNKTEYRKYKIK 421 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 ++ A + V+ RR+S+L++ + +PD++++DGG+ QL A Sbjct: 422 ST--DHANEWAETQEVIRRRYSRLLRED--------------GDFPDLILMDGGEIQLHA 465 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 AQ VL+ I I ++ K K + + + L+ + + IQR+++E H Sbjct: 466 AQEVLEDELGLTNIPIAAMVKNDKHKTA-DLIDGVTNQIVTLDKQSEGFFLIQRVQEEVH 524 Query: 539 RFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAI+ HR+ R K + S LD I G+GP ++ LL+ FG++ I+ +S L I GI++ Sbjct: 525 RFAISFHRQLRSKNSLASRLDTIQGVGPKTRQKLLREFGSLPKITAASVSDLVDI-GINE 583 Query: 598 KIACKIYNHFHKNTSH 613 K+A I+ + Sbjct: 584 KLARVIHLSLSAGDNS 599 >gi|224541413|ref|ZP_03681952.1| hypothetical protein CATMIT_00575 [Catenibacterium mitsuokai DSM 15897] gi|224525659|gb|EEF94764.1| hypothetical protein CATMIT_00575 [Catenibacterium mitsuokai DSM 15897] Length = 589 Score = 452 bits (1162), Expect = e-124, Method: Composition-based stats. Identities = 178/613 (29%), Positives = 293/613 (47%), Gaps = 46/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M + G+V+YVGKA L+ R+ SY H ++ T ++ I + + VT + Sbjct: 15 LPMSPGCYLMKNTEGKVIYVGKARKLKNRVSSYFTGA-HNYKTTKLVDHIWDFDYIVTGS 73 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLE N+IK P +NI+ D+ +PYI +T P L R + + YFGP+ Sbjct: 74 EKEALLLEINLIKDYTPEYNIMFMDNTYYPYIELT-DETHPRLKIVRKTKNKKNKYFGPY 132 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 A T L + + LR C +PCL + + +C GPC +I +Y E Sbjct: 133 PDATAARNTFKLLNKLYPLRKCNHVP----DKPCLYYSLHQCLGPCINDIDKSQYDEIRK 188 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E F+ G + +++ M A+ +E A +RD + ++ ++ + + Sbjct: 189 ELISFIHGNTKSKIDELNEKMMTASDNLQFELAKEYRDLIRSIEYVTAKQNVQFGDYKDR 248 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D Y +K IQ F G+ F + L FL +Y P P Sbjct: 249 DILGYYIDKGYISIQLFFMREGKLL--YHDFNLEPVGEDFEEDLIRFLVTYYQTHPEPYE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 +L+ ++ + L EI + P++G+K+ ++E A NA + +K + Sbjct: 307 LLIPQDVDLELLSEIL-------SCHVLQPQRGDKKSLVEMANKNAKEALEKKFLLKEKT 359 Query: 363 QMI----LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + + KK + IE+YDNS+I G AV MVV + K YRK+ + Sbjct: 360 DEKTILPIIELGKKLGIETP-HTIELYDNSNIQGAYAVAGMVVYKDGVPSKKDYRKYKIK 418 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD A M+ V+ RR+ +L+ ++ + D++I+DGG GQ+ Sbjct: 419 T--VEGPDDYASMKEVIYRRYYRLLMEQKEMA--------------DLIIVDGGLGQIKV 462 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ V+ LN+ + I ++K K S M + G + ++ + P+ + + R++DE H Sbjct: 463 AKEVIDGLNL--PVHICGLSKDDKHSTAM--LLDENGNQVPIDTKSPLFFLLTRMQDEVH 518 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 R+AI+ HR+ R K+ + S LDE++GIG RK+ LL F +VK + +S E L ++ I K Sbjct: 519 RYAISFHRQVRSKSLFSSILDEVDGIGEARKKKLLNHFKSVKKMKEASLEELEAV--IPK 576 Query: 598 KIACKIYNHFHKN 610 A K+Y HK Sbjct: 577 NTALKLYEVLHKE 589 >gi|257063773|ref|YP_003143445.1| excinuclease ABC, C subunit [Slackia heliotrinireducens DSM 20476] gi|256791426|gb|ACV22096.1| excinuclease ABC, C subunit [Slackia heliotrinireducens DSM 20476] Length = 666 Score = 452 bits (1162), Expect = e-124, Method: Composition-based stats. Identities = 177/646 (27%), Positives = 301/646 (46%), Gaps = 49/646 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 +P PGVY + G V+YVGKA L+ R++ Y++ + +I ++ QI++ + Sbjct: 13 QLASVPTLPGVYLWKNKDGEVIYVGKAKQLRARMRQYVNFQDDRAKIPLLVDQIDSFEYI 72 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V E EAL+LE N+I + P FN +D+KS+P+I +T PA+ R+ Y Sbjct: 73 VVENEHEALVLEKNLINQYAPFFNADFKDNKSYPFIALTKGDVFPAIKYTREKHVASTRY 132 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRH-----------------RTRPCLLFQI 164 FGP+ A + ++ +++ L S + + +R TRPC + Sbjct: 133 FGPYTDGRAARQLVDIVRKVVPLCSSSCAEWRRLKKKLDNDDLTAFLSETGTRPCFDAHV 192 Query: 165 KRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR 224 G C G+I+ E Y V +KFLSG E++ + M +A D+E A + R Sbjct: 193 GLGPGACCGQITPEDYRRHVERVEKFLSGRRTEFIEELTQEMMEAAADLDFERAARLKSR 252 Query: 225 LAALSHIQNHNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST 281 + ++ + + ++ +R D ++ + +A + G+ + F L S+ Sbjct: 253 IDTINSLTDRQHAVSSRNLNADVVGIHREETIAGVHVFMIREGRIINSNEFVLDRGSDVP 312 Query: 282 NAQILSYFLRQFYT-DKPCPENILLSEEAEETSLLEISFF----KQYGYKVKITVPKQGE 336 + +L FL ++Y P +++ E E++ +E ++G KV +TVP +GE Sbjct: 313 DEDLLHTFLLRYYDATTSIPHEVIVERELEDSDAMEEWLTGKLASKFGAKVHLTVPARGE 372 Query: 337 KRKIIEQALINAHRSHTQKL----STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMG 392 K +++E A NA + + + L AL P RIE +D S I G Sbjct: 373 KAELLEMARKNASHTLNRYKVRTNYEDKRVNAALLQLESALALDEPPMRIECFDISTIHG 432 Query: 393 CSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFH 452 V MVV + K QYR+F + + DD MR V+ RR+ Sbjct: 433 SYTVASMVVFTDGRPDKGQYRRFKIKT-PLDEADDFLSMREVIGRRY-----------AP 480 Query: 453 PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV 512 + + F PD++ILDGG QL+A +++ + N I + +AK + E F Sbjct: 481 ERMADTRFGKKPDLLILDGGLPQLNAVLDQFEEMGI-NDIPVCGLAKRDE-----ELFVP 534 Query: 513 KKG-EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRL 570 + +VL LY ++ +RDE+HRFAIT HR+ R K S LD++ G+GP+RK+ Sbjct: 535 WQQTGPVVLPGGSASLYLVKHVRDESHRFAITFHRELRGKGMTKSILDDVVGLGPVRKKA 594 Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616 LL+S G K + +S E + + + + ++A ++Y + T Sbjct: 595 LLKSMGGFKKLRAASLEEIKATKSVPAEVAEEVYAVLRQYNEKRTT 640 >gi|90962073|ref|YP_535989.1| excinuclease ABC subunit C [Lactobacillus salivarius UCC118] gi|119367662|sp|Q1WT45|UVRC_LACS1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|90821267|gb|ABD99906.1| Excinuclease ABC subunit C [Lactobacillus salivarius UCC118] Length = 590 Score = 452 bits (1162), Expect = e-124, Method: Composition-based stats. Identities = 180/616 (29%), Positives = 290/616 (47%), Gaps = 42/616 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+ PG Y M DI R++YVGKA NL+ R++SY ++H + ++S+I N Sbjct: 9 KLKLLPDLPGCYMMKDINSRIIYVGKAKNLKNRVRSYF-KSSHEGKTAKLVSEIRNFETI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 +T T+ EA LLE +I++ KP +NI L+ +PYI IT K P L G Y Sbjct: 68 ITSTDKEAFLLEITLIQKHKPYYNIKLKRGTGYPYIKIT-HEKDPQLKIVSQVKKDGGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A +T+ LQ+ + LR C RPCL + + +C G C E+ +Y Sbjct: 127 FGPYPNVYAATETLQLLQKVYPLRRCNGYQ----KRPCLYYHMGQCLGACFKEVPQSEYE 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + + + K FL+G +K+++ + M A+ ++E A RD++ + I N Sbjct: 183 KQIKKIKSFLNGNVSKIKKELEQKMETASENLEFERAAEIRDQIHYVEMTVEKQKIISND 242 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F+ Y NK +Q + ++ Sbjct: 243 NTPRDLFAFYMNKGWLSLQIFSIRQARLMKREKRLFPCIDTPEAELESFILQFYNQKNRI 302 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P+ IL+ ++ +L EI + + P++G+KR ++E A NA Sbjct: 303 LPKEILVPSGMDKETLSEIL-------GIPVKTPQRGQKRDLLEMAQKNARLVLEEKFRL 355 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 E + + T LP RIE +D+SH+ G V MV + K +YRK Sbjct: 356 LELDERKTTGAMNEITDALGLP-NGHRIEAFDHSHLQGEDLVSAMVCFIDGKPEKTEYRK 414 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + L +V D+ A R V+ RR+S+L+K + NL PD++++DG Sbjct: 415 YKLK--NVDHADEAASTREVIYRRYSRLLKEKANL--------------PDLILMDGASI 458 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++AA VL + I + + K + + E + L+ + Y +QR++ Sbjct: 459 QINAAVDVLHN-QLGIDIPVAGMVKNDRHKTAD--LMTENDEKIGLDPKSEGFYLLQRIQ 515 Query: 535 DEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR+ R K + S L+ I G+GP + LL+++G++K IS +S E L S+ Sbjct: 516 DEVHRFAITFHRQVRSKNSLASRLERIQGVGPKTRIKLLRNYGSLKNISAASVEDLESL- 574 Query: 594 GISKKIACKIYNHFHK 609 GISKK+A I Sbjct: 575 GISKKVAQTIKLSLKN 590 >gi|315924398|ref|ZP_07920620.1| UvrABC system protein C [Pseudoramibacter alactolyticus ATCC 23263] gi|315622277|gb|EFV02236.1| UvrABC system protein C [Pseudoramibacter alactolyticus ATCC 23263] Length = 654 Score = 451 bits (1161), Expect = e-124, Method: Composition-based stats. Identities = 180/640 (28%), Positives = 314/640 (49%), Gaps = 34/640 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRF 60 + + +P+ PG+Y M + AG ++YVGKA NL R+ Y + + +S + +I Sbjct: 20 NLKNIPKRPGIYIMHNHAGDIIYVGKAKNLFNRVHQYFQNPKKLPLKTQIQVSHVESIET 79 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE+EAL+LE N+IK +PR+NI+L+DDKS+PYI +T + + P ++ R+ G Sbjct: 80 IVVDTEMEALILECNLIKEHRPRYNIMLKDDKSYPYIKVTVQDRFPKIFMTRNHKRDGGK 139 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS--VFRHRTRPCLLFQIKRCSGPCTGEISSE 178 YFGPF + AV +TI +LQ+ + L C R RPC+ + I +C+ PCTG+++ E Sbjct: 140 YFGPFTNSMAVRQTIEALQKVYPLHRCNRKLAYGVRRGRPCMYYHIGQCTAPCTGKLTEE 199 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y E V+ L+G L +++++ M A+ + D+E+A RD++ + + + I Sbjct: 200 AYRENVNAVLDILNGKEKELIDRLSQEMAAASKRLDFETAASKRDQIQGIQMVVSRQKII 259 Query: 239 YNR---MDCFSLYHN-----------KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ 284 D + + LA +Q G+ G + + ++ Sbjct: 260 SENEQDQDFIAYAVQETPEKNDAKAAEGLASVQIFNVRDGKLLGRHPSMMTGVAGESSES 319 Query: 285 ILSYFLRQFYTD-KPCPENILLSEEA--EETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 I++ ++Q+Y P+ I+LS + +E ++ Q G +V +TVP++G+K+++I Sbjct: 320 IMTNIVKQYYAGAHFIPKEIVLSGDLAVDEAKTIQAWLSSQRGSRVTLTVPQKGDKQRLI 379 Query: 342 EQALINAHRSHTQKL----STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVG 397 NA + +Q L E + L + IP RIE YD S+I G VG Sbjct: 380 AMVQKNADLALSQYLLEKHQKEEKKKSRLDSLRDLLDIDAIPHRIEAYDISNISGSDNVG 439 Query: 398 CMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE 457 MVV E + YR+F + V+ Q+D M+ +L RR I+ + Sbjct: 440 GMVVFEEGRPQRKAYRRFKIKT--VEGQNDYGSMQEMLFRRIEHGIRE---MKEGKDSGA 494 Query: 458 YSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA 517 SF +P++ ++DGGK + AA+ +L E + + + K V + E Sbjct: 495 SSFLPFPEIFMIDGGKTHVDAAKAILAMYP-EIKSAVCGLVKDDHHQLRG---LVYRDEE 550 Query: 518 LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFG 576 + P+ + + +E HRFAI HR RKK S L+ I GIG R+ L++ +G Sbjct: 551 YKVVKGTPLSTLMNEISEEVHRFAIGYHRTLRKKGMLASQLESIPGIGKKRREALMRYYG 610 Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616 ++ I ++ + + ++ G+++K A + + F + + T Sbjct: 611 NIQNIRNATVDEMCAVNGMNQKSAEAVVDFFSRRAAENQT 650 >gi|325831464|ref|ZP_08164718.1| excinuclease ABC, C subunit [Eggerthella sp. HGA1] gi|325486718|gb|EGC89166.1| excinuclease ABC, C subunit [Eggerthella sp. HGA1] Length = 788 Score = 451 bits (1161), Expect = e-124, Method: Composition-based stats. Identities = 177/634 (27%), Positives = 305/634 (48%), Gaps = 47/634 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY D +G+V+YVGKA L+ R++ Y++ + +I ++ QI++ + V Sbjct: 119 SVPTLPGVYLWKDKSGQVIYVGKAKQLRARMRQYVNFQDERAKIPLLVDQIDSFDYIVVE 178 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 E E+L+LE N+I + P FN +DDKS+P+I +T PA+ R+ YFGP Sbjct: 179 NEHESLVLEKNLINQHAPFFNADFKDDKSYPFIALTKGDVFPAIKYTREKHRADTKYFGP 238 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFR---------------HRTRPCLLFQIKRCSG 169 + A ++ +R L + + + +R H RPC + G Sbjct: 239 YTDSRAARDMVDIARRVVPLCATSCADWRQLKRRLEKDPLALMSHDARPCFDAHVGLGPG 298 Query: 170 PCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALS 229 C G I+ E+Y V ++FLSG + +++ M +A + D+E A + R+ ++ Sbjct: 299 ACCGGITPEEYRVHVKRIERFLSGQHREFVDELQAEMQEAAAELDFERAARIKARIDTIN 358 Query: 230 HIQNHNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQIL 286 + + ++ R D L+ + +A + G+ + F L + + +L Sbjct: 359 SLTDKQHAVSTRNLDADVVGLFREETVAGVHVFMVREGRIINSNEFVLDRGKDVPDDDLL 418 Query: 287 SYFLRQFYT-DKPCPENILLSEEAEETSLLEISFFKQ----YGYKVKITVPKQGEKRKII 341 FL ++Y P ++L +E E+ + +E ++ YG KV+IT P++GEK +++ Sbjct: 419 HMFLLRYYDATTSIPHEVILRDEPEDKAAMEAWLTEKLASAYGAKVRITAPQKGEKAELV 478 Query: 342 EQALINAHRSHTQKL----STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVG 397 A NA + + + L AL P RIE +D S I G V Sbjct: 479 GMAETNAKHTLMRYKVRTNYDDKRINNALLQLESALALDEPPMRIECFDISTIHGSYTVA 538 Query: 398 CMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE 457 MVV KNQYR+F + + +D M+ V+ RR+ + + Sbjct: 539 SMVVFTNGKPDKNQYRRFKIKT-PLDEANDFLSMQEVMGRRY-----------APERMAD 586 Query: 458 YSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGE 516 F S PD++ILDGGK QLSAA + +++ +++ I + +AK + E F Sbjct: 587 ERFGSKPDLIILDGGKPQLSAALEMFERMGIDD-IAMCGLAKRDE-----ELFVPWQDTG 640 Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSF 575 +VL LY ++++RDEAHRFAIT HR+ R K S LD++ G+GP+RK+ LL++F Sbjct: 641 PVVLPSGSASLYLVKQVRDEAHRFAITFHRELRGKGMTASILDDVTGMGPVRKKALLKAF 700 Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + K + ++ E + + ++A ++Y + Sbjct: 701 KSFKNLKSATLEEIKEARVVPVEVAEELYRVLQQ 734 >gi|313206899|ref|YP_004046076.1| excinuclease ABC, c subunit [Riemerella anatipestifer DSM 15868] gi|312446215|gb|ADQ82570.1| excinuclease ABC, C subunit [Riemerella anatipestifer DSM 15868] gi|315023975|gb|EFT36977.1| Excinuclease ABC subunit C [Riemerella anatipestifer RA-YM] gi|325335664|gb|ADZ11938.1| Nuclease subunit of the excinuclease complex [Riemerella anatipestifer RA-GD] Length = 601 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 183/623 (29%), Positives = 300/623 (48%), Gaps = 49/623 (7%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + +P+ PGVY+ D AG++LYVGKA NL+ R+ SY + + ++ M+ +I+ + Sbjct: 12 LQLKTLPKEPGVYRYYDEAGQLLYVGKAKNLRNRVLSYFNKSQVGYKTKIMVKKIHRLEI 71 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T+ +E +ALLLE N+IK +P +NI+++DDKSFP++ I P L+ R Sbjct: 72 TIVPSEYDALLLENNLIKEHQPFYNIMMKDDKSFPWLCI-KNEPFPRLFLTRKRIKDGSE 130 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-----TRPCLLFQIKRCSGPCTGEI 175 Y+GP+A V + +++ + +R+C ++ R + CL + IK C GPC G Sbjct: 131 YYGPYAKVKPARVLLETIKNLYKIRTCTLNLSEDRIEKANYKVCLEYHIKNCEGPCEGLE 190 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 S E Y + ++ + + G K + M + ++E A + +++L L Q + Sbjct: 191 SEEDYEKKINAVRGIIKGDFRLAKAYLEEEMLKHASNLEFEKAQMVKEKLEFLEDYQVKH 250 Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 + +D F + ++ A I G + T + E ++ +IL + Sbjct: 251 TVVNPSIDDVDVFGMVSDETAAYINYFKIRNGNIVQSYTSEFRKKLEESDEEILEEAVVA 310 Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 +L T + + VK+ VPK G+K++I+E + NA Sbjct: 311 IRDKFQSESKEILLPFHLGTEIPQ----------VKLIVPKVGDKKRIVELSEKNAREYR 360 Query: 353 TQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 +KL + I+ + LP P+ IE +DNS+I G + V VV + Sbjct: 361 LEKLKQIQIVDPDRHTNRIMAEMKTLLRLPEEPRHIEGFDNSNIQGTNPVSACVVFKDGK 420 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 K YR F++ V+ +D A M V+ RR+ + + E+L P + Sbjct: 421 PSKKDYRIFHIKT--VEGPNDFASMEEVIYRRYKRYLDEGESL--------------PQL 464 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526 +++DGGKGQLS+A LKKL++ +I+II IAK + E FF L L+ Sbjct: 465 ILIDGGKGQLSSAVKSLKKLDLYGKISIIGIAKRLE-----ELFFPNDPIPLYLDKTSET 519 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 L +QR+RDEAHRF + HR RR + S L+EI G+G LLL +VK I +S Sbjct: 520 LKVLQRVRDEAHRFGVKHHRTRRTNSTIKSELEEIPGVGAKSIELLLSKLKSVKRIKEAS 579 Query: 586 PETLASIEGISKKIACKIYNHFH 608 ETL I G SK ++ +F+ Sbjct: 580 QETLEEILGKSKGS--IVWQYFN 600 >gi|126696315|ref|YP_001091201.1| excinuclease ABC subunit C [Prochlorococcus marinus str. MIT 9301] gi|126543358|gb|ABO17600.1| Excinuclease ABC subunit C (UvrC) [Prochlorococcus marinus str. MIT 9301] Length = 652 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 199/625 (31%), Positives = 319/625 (51%), Gaps = 27/625 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 ++P+ G Y DI +LY+GK+ L+ R+ SY ++ ++ T R++ M+ QI I VT Sbjct: 34 EIPKSSGCYLFKDIDNNLLYIGKSKKLRSRVSSYFNNYSDLTPRLSLMVRQITEIEIIVT 93 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ--GSY 121 +E EAL LE+N+IK KP FNILL+DDK +PY+ IT K P ++ R Y Sbjct: 94 DSEYEALNLESNLIKTNKPYFNILLKDDKKYPYLCITWSEKYPRIFITRRRRNRNNLDRY 153 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GP+ V + +T+ ++++ F LR V++ RT CL + I RC G C ISS+ Y Sbjct: 154 YGPYVDVGLLRRTLFTIKKIFPLRQRPRPVYKDRT--CLNYSIGRCPGVCQEVISSDDYK 211 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + + + G N +L+ + + M Q + DYE+A RD+++ L + Sbjct: 212 KIMKQVSMIFQGRNDDLEIFLQKKMLQFSNDLDYENAAKIRDQISGLKLLTESQKISIPD 271 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D F + KN+A IQ G+ G + K ++E N + + + Sbjct: 272 SSINRDIFGIVSEKNVASIQIFQMRSGKLIGRIGYSQKLNNEDENLILQKILEEHYMNVE 331 Query: 298 P--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P P IL+ + + +E + KVKI +PK+ +K + +E L NA + Sbjct: 332 PVEIPSEILIQYNLPKQATIEDWLTELRKKKVKILIPKRNKKHETVEMVLKNAKLELDRI 391 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L+ ++ ++D + L PKRIE YD SHI G V VV + K YRK+ Sbjct: 392 LNGIQDNESSIEDLAQILELSEQPKRIEGYDISHIQGSDPVASQVVFIDGVPSKQHYRKY 451 Query: 416 NLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEE--------NLNFHPKKQEYSFPSWPD 465 + +V DD A + V++RRF + + +E N + K WPD Sbjct: 452 KIKDPNVSIGHSDDFASIYEVIQRRFKKWSRFKESGGDFSILNDKTNSKLDNELLSDWPD 511 Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525 ++++DGGKGQL+AA LK+LN+E +TI S+AK + E F ++L + Sbjct: 512 LIMIDGGKGQLNAAIKALKELNLEEEVTICSLAKKNE-----EIFIPGFTKSLDTDENQK 566 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 + ++R+RDEAHRFA++ HR +R K S L +I+G+GP R R LL+ F ++ I + Sbjct: 567 GVLLLRRVRDEAHRFALSFHRDKRSKRMNRSQLSQISGLGPSRIRELLEHFKSIDAIRIA 626 Query: 585 SPETLASIEGISKKIACKIYNHFHK 609 S E L+ ++G+ K IY +F++ Sbjct: 627 SKEDLSKVKGLGKNSVNDIYEYFNE 651 >gi|157803588|ref|YP_001492137.1| excinuclease ABC subunit C [Rickettsia canadensis str. McKiel] gi|189038080|sp|A8EYB9|UVRC_RICCK RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|157784851|gb|ABV73352.1| excinuclease ABC subunit C [Rickettsia canadensis str. McKiel] Length = 638 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 232/645 (35%), Positives = 342/645 (53%), Gaps = 52/645 (8%) Query: 1 MSSE--QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNI 58 + S+ PEC GVYQM D+ +V+YVGKA NL+KR+ +Y + ++ MI+ + Sbjct: 11 IKSKLVDAPECAGVYQMFDVNKQVIYVGKAKNLKKRLTNY-IKLDLDNKTLRMIANTCFL 69 Query: 59 RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-- 116 ++VT +EVEALLLEA +IK+ +P+FNILL+DDKSFP+I + H P L K+R + Sbjct: 70 EYSVTSSEVEALLLEAQLIKKFQPKFNILLKDDKSFPFIKLRLDHDFPQLLKYRGRTRTL 129 Query: 117 IQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176 G +FGPFAS AV T+ LQ+ F LRSC D+ F R RPCL ++IKRC PC +I+ Sbjct: 130 SDGKFFGPFASATAVNTTLTELQKIFKLRSCTDNYFNSRNRPCLQYEIKRCYAPCISKIN 189 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + Y E V + FL G L+E +++ M + + +E A RDR+ ALS++Q Sbjct: 190 KKDYAELVIQVTAFLQGHTKELQENLSKKMEELSSHMYFEEAAEIRDRIKALSYVQLKAG 249 Query: 237 SI--YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 D ++ C++ C + GQ GT +F +T IL YFL QFY Sbjct: 250 ISDIVKDADIMAIVEKNGHYCVEVCLYRAGQACGTIPYFPTAMGNNTKEAILKYFLLQFY 309 Query: 295 TDKPCPENILLSEEAEETS-LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 + P I+++ E E+ ++E K+ I +P G K K+++ A NA S Sbjct: 310 QKQQLPSEIIINNEVEDKEDVIEAIKKINNITKLNIILPISGGKAKLVQNATTNALFSLE 369 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 Q L +Q I+ + + F L IP+RIEIYDNSHI G AVG MVV G++GF K +YR Sbjct: 370 QYLKKFAKNQEIMLEIKELFDLSEIPERIEIYDNSHIQGKFAVGVMVVAGKSGFDKKEYR 429 Query: 414 KFNLHPN---------------------------DVKTQDDCAMMRMVLERRFSQLIKNE 446 F+L + + DD M R VL RR ++L + Sbjct: 430 VFSLSSHDSITGFSTLTNNLDPVVKQQYDTNGTYNTTVGDDYDMFRQVLTRRLTRLKQEP 489 Query: 447 ENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAG 506 L P ++I+DGG+G + + V+ K + I + ++KGP R+AG Sbjct: 490 YKL--------------PSLMIIDGGRGHVGIVKEVMDKFKM--NIPFVCMSKGPDRNAG 533 Query: 507 MEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGP 565 +E+F + E L+ P++ ++Q LRD AH FAI HR R + S LD I GIG Sbjct: 534 LEQFHMVGKEVFTLDKNLPVMKYLQILRDAAHSFAIKNHRLGRSRTIKLSSLDNIKGIGK 593 Query: 566 LRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 RK+ LL FG+ K + ++ + L + GISK +A I+ H++ Sbjct: 594 TRKKSLLHYFGSYKAVCDATIDELVKVHGISKSLAEMIFRTLHQS 638 >gi|116492896|ref|YP_804631.1| excinuclease ABC subunit C [Pediococcus pentosaceus ATCC 25745] gi|122265640|sp|Q03F33|UVRC_PEDPA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|116103046|gb|ABJ68189.1| Excinuclease ABC subunit C [Pediococcus pentosaceus ATCC 25745] Length = 594 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 176/610 (28%), Positives = 294/610 (48%), Gaps = 41/610 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG YQM ++ +++YVGKA NL+ R++SY ++H + ++S+I + + VT + Sbjct: 13 LPDKPGCYQMKNLNSQIIYVGKAKNLKNRVRSYF-KSSHEGKTAKLVSEIADFDYIVTSS 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 + EA LLE +I++ +P +NI L+ +PYI IT+ K P + G YFGP+ Sbjct: 72 DKEAFLLEITLIQKFQPYYNIKLKKGTGYPYIKITN-EKDPRMEIVSSVRRDGGFYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A E+T++ L++ + LR C RPCL + + +C G C E+ E+Y + + Sbjct: 131 PNVYAAEETLHFLEKVYPLRRCNGFQ----GRPCLYYHMGQCLGACFQEVPKEEYDQQIA 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 + K FL G +K+ + M +A+ ++E A RD++ + I N Sbjct: 187 KIKSFLRGNVAKIKQSLQTKMQKASEAMEFERAADIRDQIHYIEVTVEKQKIISNDSTPR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ Y +K IQ F + ++ + +K P Sbjct: 247 DLFNFYLDKGWLSIQIFFIRQSRLIKREKRLFPIATDVNDELSSFILQFYNNKNKVLPNE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358 IL+ + + EI V + P++GEK+ ++E A NA Sbjct: 307 ILVPSGLDNKIMAEIL-------GVPVRTPQRGEKKNLLELAKENAQITLEEKFRLMELD 359 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +K+ T +P RIE +D+SHI G V MVV + K YRKF L+ Sbjct: 360 ESKTTGAMKEITDALGIP-EGHRIEAFDHSHIQGSELVSAMVVFTDGKPDKKMYRKFKLN 418 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V D+ A R V+ RR+ +L+K +++L PD++++DGG QL+A Sbjct: 419 T--VDHADEAASTREVIRRRYVRLLKEKQSL--------------PDLILMDGGDIQLNA 462 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ VL + I + + K K + F + + + L+ + Y +QR++DE H Sbjct: 463 AKDVLVN-ELSLHIPVAGMVKNDKHKTS-DLIFGSQDQRVQLDPKSQGFYLVQRIQDEVH 520 Query: 539 RFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT HR+ K + S LD I G+GP + LL+SFG++ I ++ + + + GI + Sbjct: 521 RFAITFHRQLHAKNSLASQLDLIQGVGPKTRNKLLKSFGSLNKIRDANLKEIEEL-GIPE 579 Query: 598 KIACKIYNHF 607 K+A I Sbjct: 580 KVAKTIKVSL 589 >gi|281424805|ref|ZP_06255718.1| excinuclease ABC subunit C [Prevotella oris F0302] gi|281401175|gb|EFB32006.1| excinuclease ABC subunit C [Prevotella oris F0302] Length = 615 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 170/628 (27%), Positives = 307/628 (48%), Gaps = 48/628 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 MPE PG YQ D ++YVGKA L++R+ SY H + ++S+I +I +TV Sbjct: 19 NMPERPGSYQFYDENKNIIYVGKAKRLKQRVSSYFHKEVDRFKTKVLVSKIRDISYTVVN 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE ++IK+ PR+N+LL+D K++P I IT+ P ++K R+ + G++FGP Sbjct: 79 TEEDALLLENSLIKKYNPRYNVLLKDGKTYPSICITN-EYFPRIFKTRNINKRFGTFFGP 137 Query: 125 FASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 + V ++ ++ ++ RT L + V + + +PCL + I C PC G+ S E+ Sbjct: 138 YPHVGSMYAILDIIKRLYKPRTCRLPLTKEGVQQGKFKPCLEYHIHNCDAPCIGKQSYEE 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y E +++A++ L G + +++ + M + +E+A + +++ L+ ++ + Sbjct: 198 YQENMNQAREILKGNTREVSKRLYQLMMKNAELLKFEAAEDIKKKISLLNEFVAKSEVVS 257 Query: 240 NRMDCFSLYH-----NKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + +D ++ + A I G + T+ K + ++ ++L + Sbjct: 258 HTIDDVDVFTIVDDETNHNAYINYIHVRKGTINQSFTYEYKRKLDESDEELLITAIPDIR 317 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 ++ E + + VP++G+K+ ++E + +N + Sbjct: 318 ERFKSHAKEIIVPFEMEWKI----------KDAEFFVPQRGDKKHLLELSEMNGKQYKFD 367 Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 +L E H ++K+ K LP P +IE +DNS+I G AV +V Sbjct: 368 RLKQSEKLNPEQKHTRLMKELQAKLKLPKFPYQIECFDNSNISGTDAVAGCIVYKGMKPS 427 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 + YRK+N+ V DD + M+ V+ RR+S++I+ + PD++I Sbjct: 428 RKDYRKYNIKT--VVGPDDYSSMQEVVRRRYSRMIEEQ--------------TPLPDLII 471 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 DGGKGQ+ + V+ + I I +AK + E + + + L+++ + Sbjct: 472 TDGGKGQMEVVREVVAD-ELHLDIPIAGLAKDDRHRT-NELLYGFPPQIIGLDVKSELFK 529 Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 + +++DE HR+AIT HR +R K A +S LD+I G+GP K LL+ TVK I + + Sbjct: 530 VLTQIQDEVHRYAITFHRNKRSKHALHSELDDIKGLGPKGKEALLKELKTVKSIKEADSQ 589 Query: 588 TLASIEGISKKIACKIYNHFHKNTSHTP 615 L ++ G SK +Y HFH T Sbjct: 590 QLITVLGASKGT--IVYKHFHPEMPETE 615 >gi|300172824|ref|YP_003771989.1| excinuclease ABC subunit C [Leuconostoc gasicomitatum LMG 18811] gi|299887202|emb|CBL91170.1| excinuclease ABC, C subunit [Leuconostoc gasicomitatum LMG 18811] Length = 596 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 174/611 (28%), Positives = 284/611 (46%), Gaps = 41/611 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG YQM D G+++YVGKA NL+ R++SY H + ++ I + F VT + Sbjct: 16 LPAEPGSYQMKDQNGKIIYVGKAKNLKNRVRSYF-KQEHNGKTAELVQNIVDFEFIVTNS 74 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 + EA LLE +IK+ KP +NI L+ +PYI IT K + P + + G YFGP+ Sbjct: 75 DKEAFLLENELIKKYKPYYNIRLKYGTGYPYIKIT-KERDPKMALVNEVKKDGGFYFGPY 133 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A ++T+ L++ + LR C RPCL + + +C GPC E+S + Y E + Sbjct: 134 PNVYAAQETLRFLEKNYPLRRCNGYQ----GRPCLYYNMGQCLGPCWHEVSKQDYDEQID 189 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRM 242 K FL G +K+ IA M A ++E A RD+L + Sbjct: 190 RIKHFLDGDTTTVKKAIAEKMKAAADTLEFERAADLRDQLKYIDETVESQRVLSKDTTPR 249 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ Y +K ++ F + + + P Sbjct: 250 DLFNYYLDKGWMTVEVFFLRQARLIRQFKRTFSVVGTEDEEMMNFIQQFYAQRNIQKPHE 309 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 +L+ +L EI V + +P +GEKR +++ A NA + Sbjct: 310 VLVPHGINIAALTEIL-------AVSVRIPVRGEKRDLMDLAKKNARIALEEKFRLMQLN 362 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E + + T +P RIE +D+SH G V MVV + K+ YRK+ + Sbjct: 363 EKKTTGAMMEITDALKIPMG-HRIEAFDHSHTQGVEIVSAMVVFDDGVPNKDLYRKYKIK 421 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V D+ A + V+ RR+S+L+K PD++++DGG+ QL A Sbjct: 422 S--VNHADEWAETQEVIRRRYSRLLKEN--------------GKMPDLILMDGGEIQLHA 465 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ VL+ + + I ++ K K + K + ++L+ + + IQR+++E H Sbjct: 466 AKEVLED-ELNLHVPIAAMVKNDKHKTA-DLIDGKTEKIVILDKQSEGFFLIQRVQEEVH 523 Query: 539 RFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAI HR+ R K + S LD I G+GP ++ LL+ FG++ I+ +S + L I G+++ Sbjct: 524 RFAINFHRQLRSKNSLASRLDNIQGVGPKTRQKLLREFGSLPKITAASVDDLMMI-GVNE 582 Query: 598 KIACKIYNHFH 608 K+A I+ Sbjct: 583 KLARVIHLSLQ 593 >gi|213018905|ref|ZP_03334713.1| excinuclease ABC, C subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995856|gb|EEB56496.1| excinuclease ABC, C subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 585 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 232/606 (38%), Positives = 347/606 (57%), Gaps = 27/606 (4%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M+ +VLY+GKA NL+ R+ Y+ N + RI MISQ+ + +T E+EALLLEA Sbjct: 1 MIGDKSKVLYIGKAKNLKSRLSDYLQFENLSERIRVMISQVIKVEIFITENEIEALLLEA 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-STIQGSYFGPFASVDAVEK 133 +IK LKP +NILLRD KS+PYI I+ KH P + K+R + Y+GPF S AV+ Sbjct: 61 QLIKSLKPSYNILLRDGKSYPYITIS-KHDYPRIAKYRGKFKKNEFHYYGPFPSAAAVKN 119 Query: 134 TINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSG 193 TI SLQ+ F LR C+D F RPCL +Q+KRCS PC +I+ + Y + V +A+ L G Sbjct: 120 TILSLQKAFLLRVCSDQYFSSTKRPCLEYQVKRCSAPCVDKITKDDYCKSVKQAQDTLLG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND--SIYNRMDCFSLYHNK 251 N ++ ++ M + + + +YE A ++RDRL L IQ S D FS+ Sbjct: 180 RNKEVQRQLFSTMEKCSREMNYELAAVYRDRLKFLQQIQMQPMDFSFEEDADFFSVVREA 239 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-KPCPENILLSEEAE 310 +LACI F N G+ +F++ S+ +N +ILS FL Y P I + + + Sbjct: 240 DLACIGVLSFRDKGNYGSIPYFIENCSDHSNDEILSTFLVNLYNPVNTPPAQIYVPDFIK 299 Query: 311 ETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFT 370 + ++E + + +K+ K ++R ++ N+ S QKL+ ++ L++ Sbjct: 300 DKEIIEQALYALTQKSIKVLHAKNSKERDLLNFIYNNSQHSLEQKLTDYRNNLEKLEELR 359 Query: 371 KKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAM 430 K F+LP+IPKRIE+YDNSHI G VG M+V G+ GF+K++Y+KF + + DD M Sbjct: 360 KIFSLPNIPKRIEVYDNSHISGNQQVGVMIVAGQEGFLKSEYKKFTIKEE--ISGDDYKM 417 Query: 431 MRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVEN 490 MR VL RRFS IK+ PD +++DGG G +S Q VL+ LN+ Sbjct: 418 MREVLTRRFSGNIKD----------------IIPDFLLIDGGPGHVSIVQNVLEILNI-- 459 Query: 491 RITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK 550 ++ +AKG R+AG E+F+V E L ++ ++Q LR+EAHRFAIT+HRK+R Sbjct: 460 KVPFACMAKGHDRNAGNERFYVPDREEFTLASDSKVMLYLQLLRNEAHRFAITSHRKKRD 519 Query: 551 KAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 K + S L EI+G+G RK+ L+ FG+V+ IS++S + ++ GISK +A I H + Sbjct: 520 KQFFASQLSEISGVGSKRKKALMSHFGSVENISKASLAEIQNVPGISKGLAEIILQHVN- 578 Query: 610 NTSHTP 615 + TP Sbjct: 579 SKKGTP 584 >gi|167755831|ref|ZP_02427958.1| hypothetical protein CLORAM_01347 [Clostridium ramosum DSM 1402] gi|237734800|ref|ZP_04565281.1| excinuclease ABC subunit C [Mollicutes bacterium D7] gi|167704770|gb|EDS19349.1| hypothetical protein CLORAM_01347 [Clostridium ramosum DSM 1402] gi|229382128|gb|EEO32219.1| excinuclease ABC subunit C [Coprobacillus sp. D7] Length = 590 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 182/614 (29%), Positives = 295/614 (48%), Gaps = 46/614 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D V+YVGKA L+ R+ SY H ++ T ++ +I + + VT + Sbjct: 13 LPLQPGCYLMKDKDNTVIYVGKAKKLKNRVSSYFVGA-HNYKTTKLVQEIVDFDYIVTDS 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLE N+IK P++NI D+K +PYI +T K K P L R++ + +FGPF Sbjct: 72 EKEALLLEINLIKDYSPKYNISFMDNKYYPYIQLT-KEKHPRLKIVRNAQDKKHKHFGPF 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 A +T L R + LR C +PCL + + +C PC E+S E Y E Sbjct: 131 PDGTAARETFKLLNRLYPLRKCNHIP----KKPCLYYSLNQCVAPCIQEVSDEVYKEMTS 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 KF+ G + + M A+ ++YE A RD + + H+ + +N Sbjct: 187 SITKFIQGDTKEIINDLQNKMMSASEVQNYELAKECRDLITHIQHVTSKQHVQFNDLVDR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D Y +K C+Q F G+ + ++ + + FL QFY + P+ Sbjct: 247 DIVGYYSDKGYLCLQLFFMRNGKLLARDLNLV--PAQDDYQEQIISFLVQFYQENTEPKE 304 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR----SHTQKLST 358 +L+ +E + L EI K P++G K ++ A NA Sbjct: 305 LLVPQELDIELLKEIVNCKIIK-------PQKGNKANLVAMANENAKEQLEKKFLLIQKN 357 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E S +K + + +P+RIE++DNS+I G AV MV + K YRKF + Sbjct: 358 EASTIGAIKQLGEILNI-QLPRRIELFDNSNIQGAYAVAGMVCFKDGTPSKKDYRKFKIK 416 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD A M+ V+ RR+ +++ PD++I+DGGKGQ+ Sbjct: 417 T--VEGPDDYASMKEVIYRRYYRVLMEG--------------LEKPDLIIVDGGKGQIKV 460 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ V+ LN+ I + +AK + S GE + +N + + + + R++DE H Sbjct: 461 AKEVIDALNL--NIMVCGLAKDDRHSTS--VLLDSSGEVVEINRKSELFFLLTRMQDEVH 516 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 R+AI+ H+ R K+ + S LD + GIGP R+++LL+ FG+VK + + E L + + Sbjct: 517 RYAISFHKNVRSKSLFQSILDSVEGIGPKRRKMLLKEFGSVKQLKEAQLEQLERV--LPH 574 Query: 598 KIACKIYNHFHKNT 611 ++A ++N +T Sbjct: 575 EVALNLFNVLKADT 588 >gi|116333985|ref|YP_795512.1| excinuclease ABC subunit C [Lactobacillus brevis ATCC 367] gi|122269331|sp|Q03QP1|UVRC_LACBA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|116099332|gb|ABJ64481.1| Excinuclease ABC subunit C [Lactobacillus brevis ATCC 367] Length = 605 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 176/624 (28%), Positives = 286/624 (45%), Gaps = 46/624 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M +I +++YVGKA NL+ R++SY ++HT + ++S+I + +T T Sbjct: 13 LPGLPGCYLMKNINSQIIYVGKAKNLKNRVRSYF-KSSHTGKTAQLVSEIVDFETIITST 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 + EA LLE +I++ +P FNI L+ +PYI IT+ + P L D YFGP+ Sbjct: 72 DKEAFLLEITLIQKHQPYFNIKLKRGTGYPYIKITN-ERDPQLLLVSDIRKDGAYYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A E+T++ LQ+ + LR C H+ RPCL + + +C G C E+ +Y + + Sbjct: 131 PNVYAAEETMHFLQKVYPLRRCPG----HQGRPCLYYHMGQCLGACFKEVPEAEYDQQIR 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 + K FL+G + K+ + + M +A YE A RD++ + I N Sbjct: 187 KIKSFLNGNVGHAKKDLTQRMEKAAADMAYERAGDLRDQIRYIEATVEKQKIISNDSTPR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ Y +K IQ F + + + + P Sbjct: 247 DIFNFYLDKGWLSIQVFFIRQARLMKREKRLFPVVNSAEEELASFIVQFYQRKNTVLPRE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358 IL+ + + E+ KV + P++G KR ++E A NA Sbjct: 307 ILVPASIDHDVIEELL-------KVPVRTPQRGTKRDLLEMAGKNAKLVLEEKFRLLELD 359 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +K+ T + +IE +D+SHI G V MVV + K YRK+ L Sbjct: 360 EGKTTGAMKEITDALGIA-PGHKIEAFDHSHIQGADLVSAMVVFVDGQPNKKLYRKYKLQ 418 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V D+ A V+ RR+ +L+K PD++++DGG Q++A Sbjct: 419 T--VDHADETASTLEVIRRRYGRLLKEH--------------APMPDLILMDGGDIQMNA 462 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 + VL+ + I + + K + F + L+ + Y +QR++DE H Sbjct: 463 VKEVLED-EFDLHIPVAGMVKNDHHKTA-DLLFGPDDHHVHLDPKSQGFYLVQRIQDEVH 520 Query: 539 RFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAI+ HR+ K + S LD I G+GP + LL+ FG+ K IS +S + + GIS+ Sbjct: 521 RFAISFHRQVHTKHSLSSRLDRIPGVGPKTRNKLLRKFGSTKKISEASMAEIREL-GISE 579 Query: 598 KIACKIYNHFHKNTSH-----TPT 616 +A I+ T+ TPT Sbjct: 580 AVARTIHVTLAAETAEIKNPRTPT 603 >gi|159903423|ref|YP_001550767.1| excinuclease ABC subunit C [Prochlorococcus marinus str. MIT 9211] gi|229558454|sp|A9BAF1|UVRC_PROM4 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|159888599|gb|ABX08813.1| Excinuclease ABC subunit C (UvrC) [Prochlorococcus marinus str. MIT 9211] Length = 647 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 186/626 (29%), Positives = 306/626 (48%), Gaps = 28/626 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN--HTHRITHMISQINNIRFTV 62 +P PG Y M D +LY+GK+ +L+ R++SY ++NN + RI+ M+ Q+ +I F + Sbjct: 23 TIPSEPGCYLMRDKNETLLYIGKSKSLKSRVRSYFNTNNTALSPRISLMVRQVYDIEFIL 82 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS--STIQGS 120 T ++ EAL LE+N+IK +P FNILL+DDK +PY+ IT + P ++ R + Sbjct: 83 TDSDSEALNLESNLIKEHQPYFNILLKDDKKYPYLCITWSEEYPRIFITRRRRLRNSEDR 142 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 Y+GP+ V + KT+ L++ F LR ++++ RT CL + I RC G C I + Y Sbjct: 143 YYGPYVDVTLLRKTLFLLKKLFPLRQRPRALYKDRT--CLNYSINRCPGVCQRLIEPDDY 200 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + + + G LK+ + + M + +++E A I RD++ + + Sbjct: 201 HKTLKKVAMIFEGRTDQLKDLLHKQMLIQSKLQEFEKAAIIRDQIKGIEQLYAAQKMTIP 260 Query: 241 R----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF--Y 294 D L + N+ C+Q G+ G F + + + + Sbjct: 261 DSTVSRDVLGLSIDSNVCCVQLFQMRAGKLVGRIGFVYNSLELRSELILQKVLEEYYSQI 320 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 + P ILL + S E + G +VKI +PK+ EK ++++ NA + Sbjct: 321 DNVTIPPEILLQSSIPQQSYFEQWLSELRGSQVKIVIPKRKEKAELVKLVKRNADIELER 380 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + H + L+D T+ L +P+RIE YD SH+ G VG VV E K YRK Sbjct: 381 VKDGQSKHLIELEDLTQVLDLAFVPRRIEGYDISHLAGTEVVGSQVVFIEGIPAKQHYRK 440 Query: 415 FNLH--PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFP--------SWP 464 + + DD + V+ RRF + K + + + + WP Sbjct: 441 YAIKSSSISSGHSDDYMALAEVIRRRFRRWSKYKADGLDLTELRNKKLSSLDPLIITDWP 500 Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524 D++++DGGKGQL A + L++L +++ I + S+AK + E F L Sbjct: 501 DLIMIDGGKGQLKAVEEALRQLGLDSDINVCSLAKRNE-----EIFVPGSYNKLDTEKNQ 555 Query: 525 PILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583 P L ++RLRDEAHRFAI HRK+R S L +I G+GP R + LL F +V+ I Sbjct: 556 PGLLLLRRLRDEAHRFAINFHRKKRSLSMKRSQLIDIPGVGPRRIKSLLAHFKSVQAIQL 615 Query: 584 SSPETLASIEGISKKIACKIYNHFHK 609 ++ + +AS+EG+ + A I+ +F+ Sbjct: 616 ATEKEIASVEGLGTETASIIFKYFNP 641 >gi|325105231|ref|YP_004274885.1| excinuclease ABC, C subunit [Pedobacter saltans DSM 12145] gi|324974079|gb|ADY53063.1| excinuclease ABC, C subunit [Pedobacter saltans DSM 12145] Length = 599 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 175/623 (28%), Positives = 304/623 (48%), Gaps = 53/623 (8%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH--THRITHMISQINNIRF 60 + +P PG+YQ + G ++Y+GKA +L+ R+ SY + + + ++ +I +I+F Sbjct: 8 LKNIPHKPGIYQYYNDEGEIIYIGKAKDLKNRVSSYFIKDTYKINSKTKVLVGKIRDIKF 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T+ +EV+A LLE ++IK+ KPR+N+LL+DDK++P+I+I + P + R Sbjct: 68 TIVDSEVDAWLLENSLIKKHKPRYNVLLKDDKTYPWIVI-KNERFPRIQWTRRIIKDGSK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175 Y GP+ SV + ++ ++ ++ LR+C ++ + R CL +QI C PC G Sbjct: 127 YLGPYPSVAMMHSILDLIKESYQLRTCNLALTPPNIAAGKFRACLEYQIGNCKAPCEGLQ 186 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 + E Y ++E K L+G + ++ +++A ++E A + + L Q+ + Sbjct: 187 TEEDYRNSINEIKDILNGKTGQVVRQLKDKISEAASSLNFEVAHQLQKKYELLEKYQSKS 246 Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 +D FS+ + +A + G T T +K + ++ ++L+ + + Sbjct: 247 TVVNSSITEVDVFSIASEEKIAFVNFLKVMHGTITQTQTIEIKKCLDESDEELLALAISE 306 Query: 293 FYTDKPC-PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA--- 348 F I++ + TVPK GEK+ +++ +L N Sbjct: 307 FRNRYKSRSREIIVPFNIDIEDANLK-----------FTVPKAGEKKSLLDLSLKNVLFF 355 Query: 349 ---HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405 +KL+ +I + +L K L +PK IE +DNS+ G V +VV + Sbjct: 356 KKDKIEQYEKLNPDIKTERLLTKMQKDLHLTELPKHIECFDNSNFQGKYPVSSIVVFKDA 415 Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465 K YR FN+ V+ +D A M + RR+ ++++ + L P Sbjct: 416 KPSKKDYRHFNVKT--VEGPNDFATMEEAVYRRYKRVLEENQPL--------------PQ 459 Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525 +V++DGGKGQLS+A LKKL + ++ +I IAK + E ++ L L+ + Sbjct: 460 LVVIDGGKGQLSSAVKSLKKLGIYEKLAVIGIAKRLE-----ELYYPGDQYPLHLDKKSE 514 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 L IQ LRDEAHRF IT HRK+R + + L+ I GIG LL SF +VK I + Sbjct: 515 TLKVIQHLRDEAHRFGITFHRKKRDQGTLKTELEMIEGIGKKTSENLLTSFKSVKRIKEA 574 Query: 585 SPETLASIEGISKKIACKIYNHF 607 + E L ++ ++KK A I + F Sbjct: 575 TEEQLLTV--VNKKQAKSIIDFF 595 >gi|259503097|ref|ZP_05745999.1| excision endonuclease subunit UvrC [Lactobacillus antri DSM 16041] gi|259168963|gb|EEW53458.1| excision endonuclease subunit UvrC [Lactobacillus antri DSM 16041] Length = 603 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 176/615 (28%), Positives = 283/615 (46%), Gaps = 42/615 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M +I G+++YVGKA +L+ R++SY + HT ++ M+S++ + VT T Sbjct: 13 LPDKPGCYLMKNINGQIIYVGKAKSLKNRVRSYF-KSTHTGKVAKMVSEVADFETIVTST 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E+ LLE +I++ +P FNI L+ +PYI IT+ + P + YFGP+ Sbjct: 72 NKESFLLEITLIQKHQPYFNIKLKRGTGYPYIKITN-ERDPQIKITGKIKKDGAYYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A E+T++ +Q+ + LR C RPCL + + +C G C E+ +Y + Sbjct: 131 PNVYAAEETVHFIQKVYPLRRCNGFQ----GRPCLYYHMGQCLGACFKEVPPAEYTAQIK 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 K FL+G N+K+ + MNQA + +YE A RD+L + I N Sbjct: 187 RIKSFLNGNTANVKKHLRAKMNQAASELEYERAAEIRDQLHYIEVTVEKQKIISNDKTPR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ Y +K IQ F + + + P Sbjct: 247 DLFNFYMDKGWLSIQVFFIRQARLMKREKRLFPIVDTAVEEMTSFILQFYNRRNNILPRE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358 +LL + EI + P++GEKR ++ A NA Sbjct: 307 LLLPAGLPNKEISEILGI-------PVRTPERGEKRDLLAMAAENARLTLDEKFRLLEMD 359 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + +K+ T LP +IE +D+SHI G V MVV + K YRK Sbjct: 360 KGKTTGAMKEITDALGLPVG-HKIEAFDHSHIQGADPVSAMVVFVDGEPAKKLYRK-YKL 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V D+ A R V+ RR+ +L+K + PD++ +DGG Q++A Sbjct: 418 KTVVDHADEAASTREVIRRRYGRLLKENK--------------PMPDMIFMDGGDIQMNA 463 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 + VL+ +L ++ I ++ + K K + F + L+ R Y +QR++DE Sbjct: 464 VKDVLENELGLD--IPVVGMVKNDKHKTA-DLLFGNDDAHVNLDPRSQGFYLVQRIQDEV 520 Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR K + S LDEI G+GP + LL+ +G+V I+++ E + ++ GI+ Sbjct: 521 HRFAITYHRSVHTKHSLSSRLDEIKGVGPRTRTKLLKKYGSVTKIAQAPVEEIHAL-GIN 579 Query: 597 KKIACKIYNHFHKNT 611 + A I KN Sbjct: 580 RPTAQLIKVSLQKNA 594 >gi|281422328|ref|ZP_06253327.1| excinuclease ABC subunit C [Prevotella copri DSM 18205] gi|281403649|gb|EFB34329.1| excinuclease ABC subunit C [Prevotella copri DSM 18205] Length = 615 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 169/622 (27%), Positives = 298/622 (47%), Gaps = 48/622 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 MPE PG YQ D ++YVGKA NL++R+ SY H ++ ++S+I++I +TV Sbjct: 19 SMPEKPGSYQYYDENHTIIYVGKAKNLKRRVSSYFHKEVDRYKTKVLVSKIHDISYTVVN 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE ++IK+ PR+N+LL+D K++P I +T+ P ++K R + G++FGP Sbjct: 79 TEEDALLLENSLIKKYNPRYNVLLKDGKTYPSICVTN-EYFPRIFKTRHINKKVGTFFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFR-----HRTRPCLLFQIKRCSGPCTGEISSEK 179 + + ++ + +++ + R+C + R R +PCL + I C PC + S E+ Sbjct: 138 YPHIGSMYAVLEVIKKLYKPRTCRMPITREGVAEGRYKPCLEYHIHNCGAPCINKQSYEE 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y E + +A++ L G + + + M + +E A ++ + L + ++ + Sbjct: 198 YQENMRQAREILKGNTREVSKYLYDLMMKNAELLRFEIAEEYKKKYQLLDEFEAKSEVVS 257 Query: 240 NRMDCFSLY-----HNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + + ++ A I G + T+ K E ++ ++L + + Sbjct: 258 HTITDVDVFTIVNDDANKNAFINYIHVKNGTINQSFTYEYKRKLEESDEELLITAIPEIR 317 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 ++ E L VP++G+K+ ++E + +N + Sbjct: 318 ERFHSTSKEIIVPFEMEWKL----------KDATFFVPQRGDKKHLLELSEMNCKQYKFD 367 Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 +L E ++K+ K LP +P +IE +DNS+I G AV +V Sbjct: 368 RLKQAEKLNPEQKQTRLMKELQAKLKLPKLPYQIECFDNSNISGTDAVAGCIVYKGMKPS 427 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 + YRK+N+ V+ DD A M+ V+ RR+S++I+ E L PD++I Sbjct: 428 RKDYRKYNIKT--VEGPDDYASMQEVVRRRYSRMIEEETAL--------------PDLII 471 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 DGGKGQ+ + V+ + I I +AK + E F + + L + Sbjct: 472 TDGGKGQMDVVREVIVD-ELHLDIPIAGLAKDDRHRT-NELLFGFPPKTIALTPESELFK 529 Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 + +++DE HR+AIT HR +R K A +S LD+I GIGP K LL F +VK + +S E Sbjct: 530 VLTQIQDEVHRYAITFHRDKRSKHALHSELDDIKGIGPKAKEALLSKFKSVKKMKEASLE 589 Query: 588 TLASIEGISKKIACKIYNHFHK 609 L+ + G A + +F + Sbjct: 590 QLSEVLG--PHKAEILAKYFAE 609 >gi|332886124|gb|EGK06368.1| excinuclease ABC, C subunit [Dysgonomonas mossii DSM 22836] Length = 604 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 182/626 (29%), Positives = 306/626 (48%), Gaps = 50/626 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVT 63 +P+ PG YQ D G ++YVGKA NL+KR+ SY N+ + + ++S+I +I++ + Sbjct: 12 NIPQKPGCYQYYDAKGVIIYVGKAKNLKKRVSSYFTKNHEDSPKTRILVSKIKDIKYIIV 71 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E + LLLE ++IK +PR+N++L+DDKS+P I+I + + R YFG Sbjct: 72 ESEEDTLLLENSLIKEFQPRYNVMLKDDKSYPSIVIRN-EYFQRIEITRKILKDGSKYFG 130 Query: 124 PFASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 P+++V +V+ + + + + +R+C + + + + CL + IKRC GPC G SE Sbjct: 131 PYSNVLSVKTLLELIHKLYPIRTCSLNLTPEKIAEGKYKVCLEYHIKRCKGPCVGLQDSE 190 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y++ V+ ++ L G + + E I M K+++E A +++ + + +N + + Sbjct: 191 EYIKNVNAIQEILKGNTNLVSESIYSEMQALAEKQEFEEANKLKEKFILIENFKNKSTVV 250 Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + +D FS + + I + G TF + E ++L+ + + Sbjct: 251 SSIKYNIDVFSYDEDADAGYINYLNVYNGAVIQAYTFEYRKRIEEEKEELLALGIIEVRK 310 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS---- 351 ++ + L ++I +P++G+K+K++ + N + Sbjct: 311 RFGSTAKEIVVPFLPDLKLD----------GIEINIPQRGDKKKLLLLSTQNVRQYKVDK 360 Query: 352 --HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 + L+ E ILK+ K L +P IE +DNS+I G + V VV K Sbjct: 361 LKRAESLNPEQRGTRILKEMQKDLNLKDLPSHIECFDNSNIQGTNPVSACVVFKMGKPSK 420 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 YR FN+ V DD + MR V+ RR+ +LI+ P ++++ Sbjct: 421 KDYRHFNVKT--VIGPDDFSTMREVVYRRYHRLIEEG--------------SPLPQLIVI 464 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQLSAA LK+L + ++ I+ IAK + E ++ + L L+ L Sbjct: 465 DGGKGQLSAACESLKELGIYGKVAIVGIAKRLE-----EIYYPEDSIPLYLDKNSESLKI 519 Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 IQ LRDEAHRF IT HR +R K S LD I GIG KRLLL+ F +VK I +S E Sbjct: 520 IQHLRDEAHRFGITFHRNQRSKGQVKSELDNIKGIGEETKRLLLKEFKSVKRIKSASSEE 579 Query: 589 LASIEGISKKIACKIYNHFHKNTSHT 614 + + G K A I +F + Sbjct: 580 IEKVVG--KHKATLIDKYFTEEKESQ 603 >gi|294675113|ref|YP_003575729.1| excinuclease ABC subunit C [Prevotella ruminicola 23] gi|294472319|gb|ADE81708.1| excinuclease ABC, C subunit [Prevotella ruminicola 23] Length = 610 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 180/622 (28%), Positives = 313/622 (50%), Gaps = 46/622 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P+ PG YQ D ++YVGKA +L+ R+ SY H+ + ++S+I +I +TV Sbjct: 19 RLPDKPGSYQFYDEEHTIIYVGKAKSLKNRVSSYFHTEVDRFKTKVLVSKIFDISYTVVN 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE ++IK+ PR+N+LL+D K++P I+IT+ P ++K R + GSY+GP Sbjct: 79 TEEDALLLENSLIKKYNPRYNVLLKDGKTYPSIVITN-EFFPRIFKTRTINKHWGSYYGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFR-----HRTRPCLLFQIKRCSGPCTGEISSEK 179 +A V A+ +N ++ + R+C + + R R CL + IK+C GPC G+ + E Sbjct: 138 YAKVSAMYDVLNLIKELYQPRTCRQPITKEGVESGRYRVCLDYHIKKCKGPCVGKQTYED 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237 Y + + +A++ L G + + + M + + + +E A + + AL + + Sbjct: 198 YQKNIAQAREILKGNTREVLKDLKDEMLRLSEELRFEEAEEVKRKYLALDGFVSKSQVVS 257 Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 +++D F++ ++ +A I G + T K T+ ++L + + Sbjct: 258 QTIDKVDVFTITSDEKMAFINYIHVSNGSINQSFTIEYKKKLNETDEELLQLGIVEIRER 317 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 ++ ++ + L VK T+PK G+K+ +++ +++N +L Sbjct: 318 FKSDSKEIIVQKEVDVELE----------GVKFTIPKLGDKKMLLDLSMMNCKEYKFDRL 367 Query: 357 ST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 E ++K+ K LP +P +IE +DNS+I G AV +V + K+ Sbjct: 368 KQAEKLNPEQKQTRLMKELQDKLHLPSLPYQIECFDNSNISGTDAVAACIVFKKMKPSKS 427 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 Y+++N+ V DD A M+ V+ RR+S+LI+ E+ L PD++I D Sbjct: 428 DYKRYNIKT--VVGPDDYASMKEVVHRRYSRLIEEEQPL--------------PDLIIAD 471 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQ+ + V++ + I I +AK + E + + L + + + + Sbjct: 472 GGKGQMEVIREVIQD-ELNLDIPIAGLAKDDRHRT-NELLYGFPPMKIALKVESELFHVL 529 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 ++DE HRFAIT HR +R K A +S LD+I GIGP + LL + +VK I + TL Sbjct: 530 THIQDEVHRFAITFHRDKRSKRALHSELDDIKGIGPKTRDELLNALKSVKKIREAELPTL 589 Query: 590 ASIEGISKKIACKIYNHFHKNT 611 + I I A IY HFHK Sbjct: 590 SEI--IGPAKAQIIYQHFHKEE 609 >gi|215445608|ref|ZP_03432360.1| excinuclease ABC subunit C [Mycobacterium tuberculosis T85] gi|289757527|ref|ZP_06516905.1| excinuclease ABC subunit C [Mycobacterium tuberculosis T85] gi|289713091|gb|EFD77103.1| excinuclease ABC subunit C [Mycobacterium tuberculosis T85] Length = 586 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 165/590 (27%), Positives = 279/590 (47%), Gaps = 33/590 (5%) Query: 52 ISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKH 111 ++ + +TV TEVEAL LE IK PRFN+ RDDKS+P + +T + P L + Sbjct: 1 MTTAAKVEWTVVGTEVEALQLEYTWIKEFDPRFNVRYRDDKSYPVLAVTLGEEFPRLMVY 60 Query: 112 RDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCS 168 R YFGP++ A+ +T++ L R F R+C+ VF+ RPCLL I +CS Sbjct: 61 RGPRRKGVRYFGPYSHAWAIRETLDLLTRVFPARTCSAGVFKRHRQIDRPCLLGYIDKCS 120 Query: 169 GPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAAL 228 PC G + + ++ + V + FLSG + + MN A + D+E A RD L+AL Sbjct: 121 APCIGRVDAAQHRQIVADFCDFLSGKTDRFARALEQQMNAAAEQLDFERAARLRDDLSAL 180 Query: 229 SHIQNHNDSIYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE--STNA 283 + D + ++ A +Q G+ RG + ++ E + Sbjct: 181 KRAMEKQAVVLGDGTDADVVAFADDELEAAVQVFHVRGGRVRGQRGWIIEKPGEPGDSGI 240 Query: 284 QILSYFLRQFY------------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITV 331 Q++ FL QFY + P P +L+ L G +V + V Sbjct: 241 QLVEQFLTQFYGDQAALDDAADESANPVPREVLVPCLPSNAEELASWLSGLRGSRVVLRV 300 Query: 332 PKQGEKRKIIEQALINAHRSHTQKLSTEISHQM----ILKDFTKKFALPHIPKRIEIYDN 387 P++G+KR + E NA + Q S L+ L P RIE D Sbjct: 301 PRRGDKRALAETVHRNAEDALQQHKLKRASDFNARSAALQSIQDSLGLADAPLRIECVDV 360 Query: 388 SHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNE 446 SH+ G VG +V + K+ YR F + + + DD A + V RRF + ++++ Sbjct: 361 SHVQGTDVVGSLVAFEDGLPRKSDYRHFGIREAAGQGRSDDVACIAEVTRRRFLRHLRDQ 420 Query: 447 ENLN-FHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSA 505 + + P+++ F P++ ++DGG Q++AA V+ +L V + + +I +AK + Sbjct: 421 SDPDLLSPERKSRRFAYPPNLYVVDGGAPQVNAASAVIDELGVTD-VAVIGLAKRLE--- 476 Query: 506 GMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIG 564 E + + + +++ LY +QR+RDEAHRFAIT HR +R + S LD + G+G Sbjct: 477 --EVWVPSEPDPIIMPRNSEGLYLLQRVRDEAHRFAITYHRSKRSTRMTASALDSVPGLG 534 Query: 565 PLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 R++ L+ FG++ + ++ + + ++ GI A +++ ++S Sbjct: 535 EHRRKALVTHFGSIARLKEATVDEITAVPGIGVATATAVHDALRPDSSGA 584 >gi|123968512|ref|YP_001009370.1| excinuclease ABC subunit C [Prochlorococcus marinus str. AS9601] gi|123198622|gb|ABM70263.1| Excinuclease ABC subunit C (UvrC) [Prochlorococcus marinus str. AS9601] Length = 652 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 198/625 (31%), Positives = 318/625 (50%), Gaps = 27/625 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 ++P+ G Y DI +LY+GK+ L+ R+ SY ++ ++ T R++ M+ QI I VT Sbjct: 34 EIPKSSGCYLFKDIDNNLLYIGKSKKLRSRVSSYFNNYSDLTPRLSLMVRQITEIEIIVT 93 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ--GSY 121 +E EAL LE+N+IK KP FNILL+DDK +PY+ IT K P ++ R Y Sbjct: 94 DSEYEALNLESNLIKTNKPYFNILLKDDKKYPYLCITWSEKYPRIFITRRRRNRNNLDRY 153 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GP+ V + +T+ ++++ F LR V++ RT CL + I RC G C ISS+ Y Sbjct: 154 YGPYVDVGLLRRTLFTIKKIFPLRQRPRPVYKDRT--CLNYSIGRCPGVCQEVISSDDYK 211 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + + + G N +L+ + + M Q + DYE+A RD+++ L + Sbjct: 212 KIMKQVSMIFQGRNDDLEIFLQKKMLQFSNDLDYENAAKIRDQISGLKLLTESQKISIPD 271 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D F + KNLA IQ G+ G + K ++E N + + + Sbjct: 272 SSINRDIFGIVSEKNLASIQIFQMRSGKLIGRIGYSQKLNNEDENLILQKILEEHYMNVE 331 Query: 298 P--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P P IL+ + + +E + KVKI +PK+ +K + +E L NA + Sbjct: 332 PVEIPSEILIQYNLPKQATIEDWLTELRKNKVKILIPKRNKKHETVEMVLKNAKLELDRI 391 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L+ ++ ++D + L PKRIE YD SHI G V VV + K YRK+ Sbjct: 392 LNGIQDNESSIEDLAQILELSEQPKRIEGYDISHIQGSDPVASQVVFIDGIPSKQDYRKY 451 Query: 416 NLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNF--------HPKKQEYSFPSWPD 465 + +V DD A + V+ RRF + + ++N + K WPD Sbjct: 452 KIKDPNVFVGHSDDFASIYEVIHRRFKKWSRFKKNGGDFSILNDKTNSKLDNELLSDWPD 511 Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525 ++++DGGKGQL+AA LK+L++E +TI S+AK + E F ++L + Sbjct: 512 LIMIDGGKGQLNAAIKALKELSLEEEVTICSLAKKNE-----EIFIPGFTKSLDTDENQK 566 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 + ++R+RDEAHRFA++ HR +R K S L +I+G+GP R R LL+ F ++ I + Sbjct: 567 GVLLLRRVRDEAHRFALSFHRDKRSKRMNRSQLSQISGLGPSRIRELLEHFKSIDAIRIA 626 Query: 585 SPETLASIEGISKKIACKIYNHFHK 609 S E L+ ++G+ K IY +F++ Sbjct: 627 SKEELSKVKGLGKNSVNDIYEYFNE 651 >gi|333029488|ref|ZP_08457549.1| UvrABC system protein C [Bacteroides coprosuis DSM 18011] gi|332740085|gb|EGJ70567.1| UvrABC system protein C [Bacteroides coprosuis DSM 18011] Length = 614 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 171/619 (27%), Positives = 314/619 (50%), Gaps = 48/619 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PG+YQ D +++YVGKA NL++R+ SY + ++ ++ ++ +I NI++ V Sbjct: 24 SLPETPGIYQYFDDKDKIIYVGKAKNLKRRVTSYFNKDHKANKTKVLVKKIRNIKYIVVN 83 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE N+IK+ +PR+N+LL+DDK++P I + + P ++K R SYFGP Sbjct: 84 TEKDALLLENNLIKKHQPRYNVLLKDDKTYPSICVQN-EFFPRVFKTRKIIKNGSSYFGP 142 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFR-----HRTRPCLLFQIKRCSGPCTGEISSEK 179 + + + ++ +++ + +R+C ++ + ++ + CL + IK C GPC G + E Sbjct: 143 YTHLPTMYTLLDLIKKLYPIRTCKHNLSQENIKSNKFKVCLEYHIKNCLGPCEGLQTEED 202 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y++ + E K+ L G + +++ M + ++E A ++ +L + + ++ ++ + Sbjct: 203 YLQNIAEIKEILKGNTREISKQLKEKMERYAENLEFEKAHEYKHKLTLVENFRSKSEVVS 262 Query: 240 NRMDCFSLYHNKNL----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + ++ ++ A I G T K T++++L+ + + T Sbjct: 263 TLIHNIDVFSIESNGEKSAYINFLHIANGAINQAYTIEYKKKLNETDSELLAMGIIEMRT 322 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 N ++ + L VK T+P++GEK+K+++ + +N + + Sbjct: 323 RFDSNANEIVVPIPLDIDLD----------NVKFTIPQRGEKKKLLDLSRLNVKQYKADR 372 Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 L + +LK+ K L +P IE +DNS+I G V +V + K Sbjct: 373 LKQAEKLNPAQRNIRLLKEIQDKLKLQKLPMHIESFDNSNIQGSDPVAACIVFKQGKPSK 432 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 YRK+N+ V DD A M V+ RR+S+L K ++ L PD++I Sbjct: 433 KDYRKYNIKT--VIGPDDYASMHEVVIRRYSRLEKEKQPL--------------PDLIIT 476 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ+ + L+++N+ +I I +AK K E + + + + + Sbjct: 477 DGGKGQMEIVRKALEEINL--KIPIAGLAKDDKHRTS-ELLYGFPAQTIGMEPTSGLFKL 533 Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 ++R++DE HRFAI HR +R K S LD I GIGP K LL++F ++K I +S + Sbjct: 534 MERIQDEVHRFAIQFHRDKRSKRQVQSELDNIPGIGPKTKEQLLKTFKSIKRIKEASEDD 593 Query: 589 LASIEGISK--KIACKIYN 605 L ++ G SK + +I+N Sbjct: 594 LITLIGHSKGTTLWKEIHN 612 >gi|312869033|ref|ZP_07729210.1| excinuclease ABC, C subunit [Lactobacillus oris PB013-T2-3] gi|311095459|gb|EFQ53726.1| excinuclease ABC, C subunit [Lactobacillus oris PB013-T2-3] Length = 603 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 175/615 (28%), Positives = 284/615 (46%), Gaps = 42/615 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M +I G+++YVGKA NL+ R++SY ++HT ++ M+S++ + VT T Sbjct: 13 LPDKPGCYLMKNINGQIIYVGKAKNLKNRVRSYF-KSSHTGKVAKMVSEVADFETIVTST 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E+ LLE +I++ +P FNI L+ +PYI IT+ + P + YFGP+ Sbjct: 72 NKESFLLEITLIQKHQPYFNIKLKRGTGYPYIKITN-ERDPQIKITGKIKKDGAYYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A E+T++ +Q+ + LR C RPCL + + +C G C E+ +Y + Sbjct: 131 PNVYAAEETVHFIQKVYPLRRCNGFQ----GRPCLYYHMGQCLGACFKEVPPAEYAAQIK 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 K FL+G N+K+ + MN+A +YE A RD+L + I N Sbjct: 187 RIKSFLNGNTANVKKHLLARMNKAASDLEYERAAEIRDQLHYIEVTVEKQKIISNDKTPR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ Y +K IQ F + + + P Sbjct: 247 DLFNFYMDKGWLSIQIFFIRQARLMKREKRLFPIVDTAVEEMTSFILQFYNRRNNILPRE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358 +LL + EI + P++GEKR ++ A NA Sbjct: 307 LLLPAGLPNKEISEILGI-------PVRTPERGEKRDLLAMAAENARLTLDEKFRLLEMD 359 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + +K+ T LP +IE +D+SHI G V MVV + K YRK Sbjct: 360 KGKTTGAMKEITDALGLPVG-HKIEAFDHSHIQGADPVSAMVVFVDGEPAKKLYRK-YKL 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V D+ A R V+ RR+ +L++ + PD++ +DGG Q++A Sbjct: 418 KTVVDHADEAASTREVIRRRYGRLLRENK--------------PMPDMIFMDGGDIQMNA 463 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 + VL+ +L ++ I ++ + K K + F + + L+ R Y +QR++DE Sbjct: 464 VKDVLENELGLD--IPVVGMVKNDKHKTA-DLLFGSEDAHVNLDPRSQGFYLVQRIQDEV 520 Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR K + S LDEI G+GP + LL+ +G+V I+++ E + ++ GI+ Sbjct: 521 HRFAITYHRSVHTKHSLSSRLDEIKGVGPRTRTKLLKKYGSVTKIAQAPVEEIHAL-GIN 579 Query: 597 KKIACKIYNHFHKNT 611 + A I KN Sbjct: 580 RPTAQLIKVSLQKNA 594 >gi|323165291|gb|EFZ51079.1| excinuclease ABC, C subunit [Shigella sonnei 53G] gi|323186793|gb|EFZ72113.1| excinuclease ABC, C subunit [Escherichia coli RN587/1] Length = 572 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 195/562 (34%), Positives = 302/562 (53%), Gaps = 32/562 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + ++++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G K+ + +G++ + ++ A NA + T K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP + R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I + + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V +N ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRK--RRKK 551 +RDE+H AI HRK RR K Sbjct: 532 HIRDESHDHAIGGHRKNGRRSK 553 >gi|258405897|ref|YP_003198639.1| excinuclease ABC, C subunit [Desulfohalobium retbaense DSM 5692] gi|257798124|gb|ACV69061.1| excinuclease ABC, C subunit [Desulfohalobium retbaense DSM 5692] Length = 636 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 179/642 (27%), Positives = 289/642 (45%), Gaps = 51/642 (7%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFT 61 +++ P+CPG Y M D GRV+YVGKA L+KR+ SY + + M+ ++ +I Sbjct: 6 AKEYPDCPGTYLMKDERGRVIYVGKAKVLRKRLASYFQEPDRLPRKTRVMMDKVWSIETL 65 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T TE EA LLE ++IK+ +PR+NI+LRDDKS+ + +H P L R +Y Sbjct: 66 CTETEKEAFLLENSLIKKHRPRYNIILRDDKSYVLFKLDKRHPFPRLSMTRRVVQDGSTY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPF S A +T L R F LR C + F +R RPCL + I RC GPC +I ++Y Sbjct: 126 FGPFTSAVAARETWKLLNRLFPLRKCKQTTFNNRVRPCLQYNIGRCLGPCVYDIPRQEYQ 185 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 E V + + FL+G + L ++ +M A+ +E A RD++ A+ ++ Sbjct: 186 EVVRQVELFLTGRSKELLRRLRADMQAASEDLRFEDAARLRDQIQAVEQTVEQQVAVLPG 245 Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE------------------S 280 D L + F GQ +FF + Sbjct: 246 GKDRDVLGLGRTVGGVALGLLFVRQGQLLDQKSFFWAEEDGTDELGLQEETASAQSTAVE 305 Query: 281 TNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKI 340 ++L F+ QFY+ ++ A E ++LE ++ G V++ ++RK+ Sbjct: 306 EAQEVLRSFVLQFYSPGRYIPERIVLPFAMEDAVLEDILSERRGGPVRLATAHGPQERKL 365 Query: 341 IEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMV 400 + A NA ++ + + + L+ + L +P+RIE D SH G V V Sbjct: 366 VSLAETNAVQAGDRA---RKTVEPPLERLQDRLGLSQLPERIEAVDASHFGGQGMVVGQV 422 Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSF 460 V + + P DD A ++ RR S Sbjct: 423 VFENGRP-HKEAYRIYAFPELEGAADDYAALQGWARRRLR------------------SG 463 Query: 461 PSWPDVVILDGGKGQLSAAQGVLK---KLNV-ENRITIISIAKGPKRSAGMEK--FFVKK 514 P WPD++++DGGKGQL A Q L + + + + ++AKG +R +E+ F + Sbjct: 464 PPWPDLIVVDGGKGQLQAVQKGLNEGQEAGLAADSFALAALAKGERRGGELEERVFRPGR 523 Query: 515 GEALVLNMRDPILYFIQRLRDEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQ 573 + L L +Q +RD HRF ++ R+ RR K S L+E+ G+GP LL Sbjct: 524 KNPVALRPGSAELLLLQHIRDSVHRFVLSRQRRTRRAKGLDSRLEELPGVGPRTAHLLWN 583 Query: 574 SFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615 FGT++ + +++ L ++ GI A ++ + TP Sbjct: 584 HFGTLERMCQATEAELEALPGIGAAKAAQLRRGLASLSPGTP 625 >gi|167628092|ref|YP_001678592.1| excinuclease ABC subunit C [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189038054|sp|B0U172|UVRC_FRAP2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|167598093|gb|ABZ88091.1| excinuclease ABC, C subunit [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 612 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 183/615 (29%), Positives = 314/615 (51%), Gaps = 30/615 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + GVY+MLD G ++YVGKA NL+ R+ SY + M+ Q+ I T+ Sbjct: 17 NLTTHSGVYRMLDKHGEIIYVGKAKNLKNRVNSYFSKGAKDSKTLMMVEQVARIEITIAP 76 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSYFG 123 ++ EA LLE N+IK+ +P++NIL +DDKS+PY++I+ + K P + +R S +G FG Sbjct: 77 SDYEAYLLENNLIKQHRPKYNILFKDDKSYPYLVIS-RDKFPRVSFYRGKSAYKKGQCFG 135 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ S+ +V+ T+N +Q+ F +R C +S ++ R RPCL +QIKRC PC G +S E+Y E Sbjct: 136 PYVSISSVKNTLNIIQKIFPIRQCENSYYKSRVRPCLQYQIKRCLAPCVGLVSQEQYDEQ 195 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR-- 241 + KKFL+G ++ E+I+ M QA+ +YE A ++RD+L L +Q Sbjct: 196 LAILKKFLAGKFSSVLEEISAKMYQASEDMEYEKAQVYRDQLVILRKLQQQQIVDIQEDK 255 Query: 242 -MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D +Y + A I G + + I+ FL FY Sbjct: 256 TFDVIGIYMQDSYASIALLQIQNGDVVADRHWSID-AKGQDKTSIMHAFLSHFYLGDEIR 314 Query: 301 ---ENILLSEEAEETSLLEISF--FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ + E + ++ ++ G + V + K ++ A +NA + Sbjct: 315 NIWPKNIILSKVEFADITDLMNSISQKIGQAINWIVAPAADNLKWLKLAEVNARQKLNIY 374 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 S++ +Q L+ + L KRIE +D SH G + + VV + G + +R++ Sbjct: 375 TSSKSQYQKRLESLKEFLELEKDIKRIECFDISHFQGEATIASCVVYTDEGEDRKSHRRY 434 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ +K DD A + + RR S ++ + PDV+I+DGGKGQ Sbjct: 435 NIKD--IKAGDDYAAIHQAVSRRVSSGLEADN---------------LPDVMIIDGGKGQ 477 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLR 534 + A+ V ++ +++++ ++S+ KG +R +G EK + L+ +P ++++R Sbjct: 478 IHQAEAVFREYGIQDKVQLVSLGKGVERISGKEKIYKGFDDTEYTLDEHNPGFLLLRQVR 537 Query: 535 DEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 D AH AI RK+ S ++EI G+GP R++ L+ FG + +SR+ + +A ++ Sbjct: 538 DSAHDHAIKGQRKKVSANRQSSIIEEIEGVGPKRRKALIMYFGGWQELSRAFVDEIAKVK 597 Query: 594 GISKKIACKIYNHFH 608 GIS K+A +I+ FH Sbjct: 598 GISNKLAQEIWECFH 612 >gi|323186311|gb|EFZ71661.1| excinuclease ABC, C subunit [Escherichia coli 1357] Length = 572 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 195/562 (34%), Positives = 302/562 (53%), Gaps = 32/562 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + ++++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G K+ + +G++ + ++ A NA + T K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP + R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I + + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V +N ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRK--RRKK 551 +RDE+H AI HRK RR K Sbjct: 532 HIRDESHDHAIGGHRKNGRRSK 553 >gi|78779302|ref|YP_397414.1| excinuclease ABC subunit C [Prochlorococcus marinus str. MIT 9312] gi|119367683|sp|Q31AW7|UVRC_PROM9 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|78712801|gb|ABB49978.1| Excinuclease ABC subunit C [Prochlorococcus marinus str. MIT 9312] Length = 652 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 196/625 (31%), Positives = 315/625 (50%), Gaps = 27/625 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 ++P+ G Y DI +LY+GK+ L+ R+ SY ++ ++ T R++ M+ QI I VT Sbjct: 34 EIPKSSGCYLFKDIDNNLLYIGKSKKLRSRVSSYFNNYSDLTPRLSLMVRQITEIEIIVT 93 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ--GSY 121 +E EAL LE+N+IK KP FNILL+DDK +PY+ IT K P ++ R Y Sbjct: 94 DSEYEALNLESNLIKTNKPYFNILLKDDKKYPYLCITWSEKYPRIFITRRRRNRNNLDRY 153 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GP+ V + +T+ ++++ F LR V++ RT CL + I RC G C ISS+ Y Sbjct: 154 YGPYVDVGLLRRTLFTIKKIFPLRQRPRPVYKDRT--CLNYSIGRCPGVCQEVISSDDYK 211 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + + + G N +L+ + + M Q + DYE+A RD+++ L + Sbjct: 212 KIMQQVSMIFQGRNDDLEIFLQKKMLQFSNDLDYENAAKIRDQISGLKLLTESQKISIPD 271 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--T 295 D F + KN+A IQ G+ G + K ++E N + + Sbjct: 272 SSINRDIFGIVSEKNVASIQIFQMRSGKLIGRIGYSQKLNNEDENHILQKILEEHYMNVE 331 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P IL+ + + +E + KVKI +PK+ +K + +E L NA + Sbjct: 332 AVEIPSEILIQYNLPKQATIEDWLTELRKKKVKILIPKRNKKHETVEMVLKNAKLELDRI 391 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L+ ++ ++D + L PKRIE YD SHI G V VV + K YRK+ Sbjct: 392 LNGIQDNESSIEDLAQILELSEQPKRIEGYDISHIQGSDPVASQVVFIDGIPSKQHYRKY 451 Query: 416 NLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEE--------NLNFHPKKQEYSFPSWPD 465 + +V DD A + V+ RRF + + ++ N + K WPD Sbjct: 452 KIKDPNVFVGHSDDFASIYEVIHRRFKKWSRFKKSGGDFSILNDKTNSKLDNELLSDWPD 511 Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525 ++++DGGKGQL+AA L +LN+E +TI S+AK + E F ++L + Sbjct: 512 LIMIDGGKGQLNAAIKALNELNLEEEVTICSLAKKNE-----EIFIPGFTKSLDTDENQK 566 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 + ++R+RDEAHRFA++ HR +R K S L +I+G+GP R R LL+ F ++ I + Sbjct: 567 GVLLLRRVRDEAHRFALSFHRDKRSKRMNRSQLSQISGLGPSRIRELLEYFKSIDAIRIA 626 Query: 585 SPETLASIEGISKKIACKIYNHFHK 609 S E L+ ++G+ K IY +F++ Sbjct: 627 SKEDLSKVKGLGKNSVNDIYEYFNE 651 >gi|288928690|ref|ZP_06422536.1| excinuclease ABC subunit C [Prevotella sp. oral taxon 317 str. F0108] gi|288329674|gb|EFC68259.1| excinuclease ABC subunit C [Prevotella sp. oral taxon 317 str. F0108] Length = 607 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 173/629 (27%), Positives = 303/629 (48%), Gaps = 48/629 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P+ PG YQ D ++YVGKA NL+ R+ SY H + ++S+I +I +TV Sbjct: 10 SLPDKPGSYQFYDEQHIIIYVGKAKNLKSRVSSYFHKEVDRFKTKVLVSKIFDISYTVVN 69 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE ++IK+ PR+N+LL+D K++P I IT+ P ++K R + G+Y+GP Sbjct: 70 TEEDALLLENSLIKKYNPRYNVLLKDGKTYPSICITN-ELYPRIFKTRTINKRLGTYYGP 128 Query: 125 FASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ V + + + RT + V + + CL + I C PC G+ S E Sbjct: 129 YSHVPTMVALLELIGKLYKPRTCHFPITHEGVEMGKYKACLEYHIHNCDAPCVGKQSWED 188 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y E + +A++ L G +++ + M + + +E A + R L + ++ + Sbjct: 189 YQENIRQAREILKGNTREVRKMLYEEMLKKAEELKFEEAEALKKRYILLDNYCAKSEVVS 248 Query: 240 NRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + ++ + A I G + TF K + +N IL+ + + Sbjct: 249 FSIADVDVFTITDDEFNRTAFINYLHVKNGTVNQSFTFEYKRKLDESNEDILASAIPEIR 308 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 ++ E ++ E +F VP++G+KR+++E + +N + Sbjct: 309 ERFGSKAKEIIVPFEMEWAMREATFI----------VPQRGDKRRLLELSEMNGKQYKFD 358 Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 +L E ++K+ K +P +P +IE +DNS+I G AV VV Sbjct: 359 RLKQSEKLNPEQKAVRLMKELQTKLQMPRLPYQIECFDNSNISGTDAVAGCVVFKGMKPS 418 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 K YRK+N+ V+ DD A M+ V+ RR++++I+ E PD++I Sbjct: 419 KKDYRKYNIKS--VEGPDDYASMKEVVRRRYTRMIEEE--------------TPLPDLII 462 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 DGGKGQ+ + V+ + + I I +AK + E + + + L+++ + + Sbjct: 463 TDGGKGQMGVVREVVVEE-LHLDIPIAGLAKDDRHRT-NELLYGWPPQVVGLDVKSELFH 520 Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 + R++DE HR+AI+ HR +R K A +S LD+I GIGP K LL+ +VK I + + Sbjct: 521 VLTRIQDEVHRYAISFHRDKRSKHALHSELDDIKGIGPKTKATLLKELKSVKQIKEAPLD 580 Query: 588 TLASIEGISKKIACKIYNHFHKNTSHTPT 616 LA I A ++N++H T + T Sbjct: 581 VLAK--HIGNTKAQIVFNYWHNETPNETT 607 >gi|257791532|ref|YP_003182138.1| excinuclease ABC, C subunit [Eggerthella lenta DSM 2243] gi|257475429|gb|ACV55749.1| excinuclease ABC, C subunit [Eggerthella lenta DSM 2243] Length = 737 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 173/634 (27%), Positives = 300/634 (47%), Gaps = 47/634 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY D +G+V+YVGKA L+ R++ Y++ + +I ++ QI++ + V Sbjct: 68 SVPTLPGVYLWKDKSGQVIYVGKAKQLRARMRQYVNFQDERAKIPLLVDQIDSFDYIVVE 127 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 E E+L+LE N+I + P FN +DDKS+P+I +T PA+ R+ YFGP Sbjct: 128 NEHESLVLEKNLINQHAPFFNADFKDDKSYPFIALTKGDVFPAIKYTREKHRADTKYFGP 187 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFR---------------HRTRPCLLFQIKRCSG 169 + A ++ +R L + + + +R H RPC + G Sbjct: 188 YTDSRAARDMVDIARRVVPLCATSCADWRQLKRRLEKDPLALMSHDARPCFDAHVGLGPG 247 Query: 170 PCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALS 229 C G I+ E Y V ++FLSG + +++ M +A + D+E A + R+ ++ Sbjct: 248 ACCGGITPEDYRVHVKRIERFLSGQHREFVDELQAEMQEAAAELDFERAARIKARIDTIN 307 Query: 230 HIQNHNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQIL 286 + + ++ R D L+ + +A + G+ + F L + + +L Sbjct: 308 SLTDKQHAVSTRNLDADVVGLFREETVAGVHVFMVREGRIINSNEFVLDRGKDVPDDDLL 367 Query: 287 SYFLRQFYT-DKPCPENILLSEEAEETSLLEISFFKQYGYKV----KITVPKQGEKRKII 341 FL ++Y P ++L +E E+ + +E ++ +IT P++GEK +++ Sbjct: 368 HMFLLRYYDATTSIPHEVILRDEPEDKAAMEAWLTEKLASPYGAKVRITAPQKGEKAELV 427 Query: 342 EQALINAHRSHTQKL----STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVG 397 A NA + + + L AL P RIE +D S I G V Sbjct: 428 GMAETNAKHTLMRYKVRTNYDDKRINNALLQLESALALDEPPMRIECFDISTIHGSYTVA 487 Query: 398 CMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE 457 MVV KNQYR+F + + +D M+ V+ RR+ + + Sbjct: 488 SMVVFTNGKPDKNQYRRFKIKT-PLDEANDFLSMQEVMSRRY-----------APERMAD 535 Query: 458 YSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGE 516 F S PD++ILDGGK QLSAA + +++ +++ I + +AK + E F Sbjct: 536 ERFGSKPDLIILDGGKPQLSAALEMFERMGIDD-IAMCGLAKRDE-----ELFVPWQDTG 589 Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSF 575 +VL LY ++++RDEAHRFAIT HR+ R K S LD++ G+GP+RK+ LL++F Sbjct: 590 PVVLPSGSASLYLVKQVRDEAHRFAITFHRELRGKGMTASILDDVTGMGPVRKKALLKAF 649 Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + K + ++ E + + ++A ++Y + Sbjct: 650 KSFKNLKSATLEEIKEARVVPVEVAEELYRVLQQ 683 >gi|302871016|ref|YP_003839652.1| excinuclease ABC, C subunit [Caldicellulosiruptor obsidiansis OB47] gi|302573875|gb|ADL41666.1| excinuclease ABC, C subunit [Caldicellulosiruptor obsidiansis OB47] Length = 593 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 190/612 (31%), Positives = 300/612 (49%), Gaps = 36/612 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRF 60 +P PGVY M D G V+YVGKA NL+ R++ Y +++ + M+ +I ++ + Sbjct: 6 KLSNLPTSPGVYIMKDENGNVIYVGKAVNLRNRVRQYFQNSSDMLPKTRLMVKKIKDLDY 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT E+EAL+LE N+IK +P++N+LLRDDK++ YI IT+ P L R Sbjct: 66 IVTDNEIEALILECNLIKEYRPKYNVLLRDDKNYQYIKITN-EMFPRLVTTRKIEKDGSR 124 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S +V++T+ L+ F LR+C + RPCL F I++C G C G+++ E Sbjct: 125 YFGPYVSGYSVKQTVELLKSLFMLRTCKKKFPDQLGKGRPCLNFYIEKCLGVCKGDVAEE 184 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y V A K LSG + +++ M + +E A +++L++L I I Sbjct: 185 EYQRLVEGAIKVLSGKGDEIVQELKAKMFEYAENLMFEKAQEIKNKLSSLEQIITKQKVI 244 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 Y D + + I G+ F LK D + FL Q+Y+ Sbjct: 245 YADDRSEDVINFAKDHTHIAIVVLIIRNGKLINKEEFVLKADED-----TFERFLEQYYS 299 Query: 296 D-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 D P+ I++ E +E K YG+KVK+TVPKQGEK+++++ A NA S Sbjct: 300 DVVSLPKEIIIPHTIENADNIEKMIEKLYGFKVKVTVPKQGEKKQLLDMAKKNAEISLAN 359 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + + L L + ++IE YD S+I G VG ++V + F K YRK Sbjct: 360 RQRVGDVYAEALLTLKNLLGLENEIEKIESYDISNIAGADNVGTLIVFEDGRFNKEFYRK 419 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + + QDD ++ VL RRF+ L K PD++++DGG+ Sbjct: 420 FKIKG--FEGQDDIKSVKEVLTRRFTSLEK---------------HGRIPDLILIDGGQN 462 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++AA VL L I + + K + + G+ + + + I ++ Sbjct: 463 QVNAALEVLNTLGFS--IPVAGMVKDDRHKTRD---LIYNGKEVGIQEYPLVYKLIYAIQ 517 Query: 535 DEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 +E HRFA+ HR+ RKK S LDEI GIG RK L ++FG++ + ++S E + Sbjct: 518 EETHRFAVKFHREVRKKHLYESILDEIEGIGEKRKLKLFRTFGSIDNLRKASIEEIVKAA 577 Query: 594 GISKKIACKIYN 605 I ++A KI Sbjct: 578 DIPYEVALKIKE 589 >gi|315649369|ref|ZP_07902458.1| excinuclease ABC, C subunit [Paenibacillus vortex V453] gi|315275357|gb|EFU38726.1| excinuclease ABC, C subunit [Paenibacillus vortex V453] Length = 669 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 156/657 (23%), Positives = 272/657 (41%), Gaps = 62/657 (9%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M + G ++YVGKA L+ R++SY + H + ++S+I + + VT + Sbjct: 25 LPDLPGCYLMKNQDGTIIYVGKAKVLKNRVRSYFTGS-HNGKTQMLVSEIRDFEYIVTGS 83 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK +PRFN+LL+DDK++PY+ IT++ P L R + YFGP+ Sbjct: 84 NMEALILECNLIKTHQPRFNVLLKDDKTYPYLKITNEE-HPRLEVTRRVLKDKAKYFGPY 142 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + A ++T L R + LR C CL + + +C PC E+ + Y + Sbjct: 143 PNAYAAQQTKKLLDRMYPLRKCGVMP----KEVCLYYHMGQCLAPCVKEVPNSAYEQITG 198 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E FL+GG+ +K+++ R M +A +E A RD++ + + Sbjct: 199 EINSFLNGGHEEIKKELQRKMQEAAEDLYFERAKELRDQIIHIDTLMEKQKITTTDTRDR 258 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q + G+ F+ Q+Y+D P Sbjct: 259 DVFGYAVDKGWMCVQILYMRQGKMVQRNKSVF--PFYGDAHSDFMSFIAQYYSDNPALPQ 316 Query: 303 ILLSEEAEETS------------LLEISFFKQYGYKVKITVPKQGEKRKIIEQALI-NAH 349 +L + S + + P G ++ E + Sbjct: 317 EILLPGPLLIEEAAGSVTATGTVIEAESVQGKENAADSASQPTAGSAEELQEALVQAQEE 376 Query: 350 RSHTQKLSTEISHQMILKD------------FTKKFALPHIPKRIEIYDNSH----IMGC 393 ++ + + L++ K+ D Sbjct: 377 KAEAEGIVDAAGGAAALQEWLGVKVHVPQRGLKKQMVGMASDNARVSLDEKFRLIERDEE 436 Query: 394 SAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVL--------ERRFS----- 440 +GE +++ R ++++ + + M + R++ Sbjct: 437 RTSVAAANLGEVIGLQSLNRIEAFDNSNIQGSNPVSAMVVFTNGKPDKKEYRKYKIRTVL 496 Query: 441 ---QLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK-KLNVENRITIIS 496 E + ++ PD++++DGGKGQ+SAA VL+ +L + + + Sbjct: 497 GPDDYDTMREVIRRRYERVLKENLPLPDLIVVDGGKGQISAAIDVLENELGL--FVPVCG 554 Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YS 555 + K K E + L Y +QR++DE HRFAI+ HR +R K+ S Sbjct: 555 LVKDAKHKTAQ-LMIGDPPEPVTLPRDSQEFYLLQRIQDEVHRFAISFHRDQRGKSMVTS 613 Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 LD I GIG R++LLL+ FG+VK I +S E + I +K+A +I N + S Sbjct: 614 KLDSIPGIGEKRRKLLLKHFGSVKKIKEASVEDFKPL-SIGEKLATQILNALREEES 669 >gi|238544546|dbj|BAH60898.1| putative excinuclease ABC subunit C [Desulfotignum balticum] Length = 588 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 181/598 (30%), Positives = 309/598 (51%), Gaps = 24/598 (4%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVTCTEVEALLLE 73 M D +++YVGKA +L+KR+ SY ++ + +++ + + +T ++ EA +LE Sbjct: 1 MKDARKKIIYVGKAKDLKKRLGSYFARQDHTDGKTAALLAMVRDFDVIITASDHEAFILE 60 Query: 74 ANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEK 133 +N+IK +PR+N+LL+D K++P + I PA+ + R Q YFGP++S +V + Sbjct: 61 SNLIKEYRPRYNVLLKDGKNYPLLRIDMNEPFPAIQRVRRIQNDQALYFGPYSSSRSVNQ 120 Query: 134 TINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSG 193 T+ +Q+ F LR C ++ F++R+RPCL +QI C GPC ++ ++Y + V +A FL G Sbjct: 121 TLGQIQKIFKLRKCRNTQFKNRSRPCLNYQINACLGPCCLKVDEQEYKQHVKDAVLFLKG 180 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMDCFSLYHN 250 + + +K+ M ++E A RD + A++HI D +L Sbjct: 181 RSGQVIQKLKAQMQAHAHALEFEKAAQKRDAVTAMTHILEKQVVVAADLKDRDVLALAVE 240 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAE 310 K +A I G+ T + + + ++ + ++ + + + P+ +LL E E Sbjct: 241 KEMAVITMMIVRSGRLIDTVHYPVDPGFKESHEILRAFLWQYYDVTRFLPDAVLLDREIE 300 Query: 311 ETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFT 370 +L +Q KV + VP +GEKR+++E A +NA R + + Q + Sbjct: 301 NMDVLASRLSEQKHRKVTVHVPMRGEKRRLVEMADVNAARELEKLRIKTEAAQSAVTQVQ 360 Query: 371 KKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAM 430 + +P RIE +DNSH+ G V MVV KN YR++ L + DD A Sbjct: 361 ALLKMDRMPDRIECFDNSHLAGQDPVSSMVVFTRGRPDKNAYRRYILRD--MDRPDDYAG 418 Query: 431 MRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVEN 490 M VL RRF + K + +PD++++DGGKGQL A VLK+LN+ Sbjct: 419 MTQVLTRRFLKTEKEMD---------------FPDLLVVDGGKGQLGMAVAVLKELNLAG 463 Query: 491 RITIISIAKGPKRSAG--MEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH-RK 547 R + +AK + + + + L L+ +Q++RDEAHRFA+T ++ Sbjct: 464 RFAVAGLAKKDEAKGEDMDKIYVPGRSNPLNTASFKQGLFLLQQVRDEAHRFAVTFQRKR 523 Query: 548 RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 R+K++ S D I G+GP RK+LLLQ F ++ + +S + L S+ GI++K+A +I Sbjct: 524 RKKRSRLSVFDAIPGVGPKRKKLLLQQFKGLENLKAASVDELTSLPGITEKLAEQILA 581 >gi|299142034|ref|ZP_07035168.1| excinuclease ABC subunit C [Prevotella oris C735] gi|298576496|gb|EFI48368.1| excinuclease ABC subunit C [Prevotella oris C735] Length = 615 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 170/628 (27%), Positives = 308/628 (49%), Gaps = 48/628 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 MPE PG YQ D ++YVGKA L++R+ SY H + ++S+I +I +TV Sbjct: 19 NMPEKPGSYQFYDENKNIIYVGKAKRLKQRVSSYFHKEVDRFKTKVLVSKIRDISYTVVN 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE ++IK+ PR+N+LL+D K++P I IT+ P ++K R+ + G++FGP Sbjct: 79 TEEDALLLENSLIKKYNPRYNVLLKDGKTYPSICITN-EYFPRIFKTRNINKRFGTFFGP 137 Query: 125 FASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 + V ++ ++ ++ RT L + V + + +PCL + I C PC G+ S E+ Sbjct: 138 YPHVGSMYAILDIIKRLYKPRTCRLPLTQEGVQQGKFKPCLEYHIHNCDAPCIGKQSYEE 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y E +++A++ L G + +++ + M + +E+A + +++ L+ ++ + Sbjct: 198 YQENMNQAREILKGNTREVSKRLYQLMMKNAELLKFEAAEDIKKKISLLNEFVAKSEVVS 257 Query: 240 NRMDCFSLYH-----NKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + +D ++ + A I G + T+ K + ++ ++L + Sbjct: 258 HTIDDVDVFTIVDDETNHNAYINYIHVRKGTINQSFTYEYKRKLDESDEELLITAIPDIR 317 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 ++ E + + VP++G+K+ ++E + +N + Sbjct: 318 ERFKSHAKEIIVPFEMEWKI----------KDAEFFVPQRGDKKHLLELSEMNGKQYKFD 367 Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 +L E H ++K+ K LP +P +IE +DNS+I G AV +V Sbjct: 368 RLKQSEKLNPEQKHTRLMKELQAKLKLPKLPYQIECFDNSNISGTDAVAGCIVYKGMKPS 427 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 + YRK+N+ V DD + M+ V+ RR+S++I+ + PD++I Sbjct: 428 RKDYRKYNIKT--VVGPDDYSSMQEVVRRRYSRMIEEQ--------------TPLPDLII 471 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 DGGKGQ+ + V+ + I I +AK + E + + + L+++ + Sbjct: 472 TDGGKGQMEVVREVVAD-ELHLNIPIAGLAKDDRHRT-NELLYGFPPQTIGLDVKSELFK 529 Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 + +++DE HR+AIT HR +R K A +S LD+I G+GP K LL+ TVK I ++ + Sbjct: 530 VLTQIQDEVHRYAITFHRNKRSKHALHSELDDIKGLGPKGKEALLKELKTVKSIKKADNQ 589 Query: 588 TLASIEGISKKIACKIYNHFHKNTSHTP 615 L + G SK +Y HFH T Sbjct: 590 RLIQVLGASKGT--IVYKHFHPEMPETE 615 >gi|15678469|ref|NP_275584.1| excinuclease ABC subunit C [Methanothermobacter thermautotrophicus str. Delta H] gi|8134792|sp|O26541|UVRC_METTH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|2621507|gb|AAB84947.1| excinuclease ABC subunit C [Methanothermobacter thermautotrophicus str. Delta H] Length = 579 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 187/610 (30%), Positives = 301/610 (49%), Gaps = 46/610 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E++P+ GVY D RVLYVGK+ +++KR+ SY R+ M+ + +I + Sbjct: 6 DPEKLPDATGVYIFRDRDDRVLYVGKSISIRKRVSSYFREQE-NPRLRIMMRHLESIEYI 64 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 +T E EAL+LE+N+IKR +P +N+ L+DDK +P+I IT + P + R Y Sbjct: 65 LTQNEKEALILESNLIKRYRPPYNVRLKDDKRYPFIKIT-DEEYPRVLIVRTIGRDSARY 123 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GPF AV +T+ ++ F +RS R PCL QI C PC G IS E Y Sbjct: 124 YGPFTDTGAVRRTLKLIKSLFRIRS-----CRRMDGPCLNSQIDLCYAPCDGRISREDYR 178 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 E + + F G + E + M +A+ + ++E A RD++ ++ + + + Sbjct: 179 EIIEKVDLFFQGRYQEVIEVLEEEMKEASERLEFERAARIRDQIESIREVMERQHASFTD 238 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D +L + + + G+ G F L+ + +IL FL+Q+Y Sbjct: 239 SIDQDIVALERGGDTSAVVVLQIRDGKITGKDDFILRGSA--PRTEILEAFLKQYYAIPR 296 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 + +L++ E ++ + G +VKI P+ G R+++ A NA + L Sbjct: 297 RVPSEILTQYPVEDGVIAEWLSELRGEEVKIHSPEGGAGRRLLNIAWKNA----SVILKQ 352 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + + L LP IP+R+E D S+I G SA G + V + YR++ + Sbjct: 353 KGRVRDALLQLKDDLKLPEIPRRMEGLDISNIAGESATGSVAVFIDGKPSSGSYRRYRI- 411 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + DD AMMR ++ERR+S PD+V++DGGKGQL Sbjct: 412 --SAQGPDDYAMMRELVERRYS-----------------SPELRKPDLVLIDGGKGQLGV 452 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A LK V + ++ IAK + E + E + ++ D L ++ LRDEAH Sbjct: 453 ALEALKNCGVH--VPVVGIAKKRE-----EVYLPGLSEPV--DVDDGALQILRHLRDEAH 503 Query: 539 RFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFA+ HR R + + S LD I G+GP+RKR LL+ FG++ + +S E LASI G+++ Sbjct: 504 RFAVKYHRTIRDRDSLESELDGIRGVGPVRKRALLEHFGSLDGVRDASVEELASIPGMTR 563 Query: 598 KIACKIYNHF 607 ++A +I+ HF Sbjct: 564 EVAERIHRHF 573 >gi|163789539|ref|ZP_02183977.1| excinuclease ABC subunit C [Carnobacterium sp. AT7] gi|159875071|gb|EDP69137.1| excinuclease ABC subunit C [Carnobacterium sp. AT7] Length = 592 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 173/615 (28%), Positives = 295/615 (47%), Gaps = 47/615 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M + ++Y+GKA NL+KR++SY H + ++ +I + +T T Sbjct: 13 LPDLPGCYLMKNKEKEIIYIGKAKNLKKRVRSYFRGT-HEGKTQLLVEEIVDFETIITST 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 + E LLLE +IK+ P++NI L+ S+PY+ IT+ K P L + G YFGP+ Sbjct: 72 DKECLLLEITLIKKHLPKYNIKLKQGTSYPYLKITN-EKDPQLIITSEVKRDGGHYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A +T +Q+ + LR C R CL + + +C GPC EI E+Y + Sbjct: 131 PNVYAASETQQFIQKVYPLRKCNGYQ----KRACLYYHLGQCIGPCDHEIPKEEYNAQID 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 + ++FL+G +K+ + M QA + +E A +R+++ + + I N Sbjct: 187 KIRRFLNGDVKEIKKILKSKMMQAADELAFERAAEYRNQIQYIETTVERQNIITNDFTTR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP--CP 300 D FS Y NK IQ F T + L+ ++ QFY ++ P Sbjct: 247 DVFSYYMNKGWISIQVFFIRQATLIKREATIFPC--YDTPQEELASYMVQFYQEENHLLP 304 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKL 356 + IL+ + +L E+ ++ + VP QG K+ +++ A N+ Sbjct: 305 KEILVPSGVDTKTLSEVL-------EIPVKVPLQGRKKDMLDLATKNSEISLNEKFQLIE 357 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + +K+ ++ LP + RIE +D+S+I G + V MV + K+ YRK+ Sbjct: 358 MDDRKTIGAIKELSEALHLPLVS-RIEAFDHSNIQGTNPVSAMVSFLDGRPDKSNYRKYK 416 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + +V ++ A V+ RR+ +L+K + L PD++++DGGK Q+ Sbjct: 417 IK--NVHGSNELATTEEVIRRRYERLLKEGKPL--------------PDLILMDGGKIQV 460 Query: 477 S-AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 + A + +L + I + + K K F +K E + L Y +QR++D Sbjct: 461 NGAINILENELGLS--IPVAGMVKDDKHRTSS-LIFGEKLEKVSLKPTSQAFYLVQRIQD 517 Query: 536 EAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E HRFAIT HR+ R K + S LD I G+GP + +L+ F +VK ++ +S E + + G Sbjct: 518 EVHRFAITFHRQLRGKNSLSSKLDRIEGVGPKTRTKILKHFKSVKKVTEASVEEINGL-G 576 Query: 595 ISKKIACKIYNHFHK 609 I K A +I + Sbjct: 577 IPLKTAVRIKEALSE 591 >gi|284120321|ref|ZP_06386795.1| excinuclease ABC, C subunit [Candidatus Poribacteria sp. WGA-A3] gi|283829423|gb|EFC33805.1| excinuclease ABC, C subunit [Candidatus Poribacteria sp. WGA-A3] Length = 583 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 190/599 (31%), Positives = 297/599 (49%), Gaps = 21/599 (3%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M G +Y+GKA NL+ R+ SY + +I +++ ++++I + VT E EAL +E Sbjct: 1 MKGPGGTPVYIGKAKNLRARVMSYFQRGSDRGQIPYLVREVDSIDYVVTEGESEALFIEN 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 ++IKR KP++NI L+DDK+F + ++ + P L + R YFGPFAS ++ T Sbjct: 61 SLIKRHKPKYNIRLKDDKTFSSLRLSVGERFPRLSRTRRIRDDGALYFGPFASGKFLKST 120 Query: 135 INSLQRTFFLRSCADSVF-RHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSG 193 +N + R F LR C S F RH TRPCL + +K CSGPC G+IS E Y E V +A FL G Sbjct: 121 VNLVHRLFPLRDCTQSKFERHSTRPCLNYFMKLCSGPCAGKISEEDYGELVSQATSFLRG 180 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMDCFSLYHN 250 L I M +A+ YE+A +RD+L +L + MD Y + Sbjct: 181 ERKKLVRMIREMMERASEDGRYENAAYYRDQLVSLKENAEIEKVTSSRFEDMDIMGFYRD 240 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAE 310 G F +K+ + + R +++D P+ +LL Sbjct: 241 SENYEFTVLLSRGGSVVDKLDFSVKSPHGDEAECVREFLGRFYFSDHYIPKRVLLPLSIR 300 Query: 311 ETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFT 370 + ++ G +V + P++G K +++ A+ NA S +K + +L+ Sbjct: 301 DREGYSEWLTEKKGKRVYVETPRRGPKSELVRFAMKNARESFARKAEEKAEQGTLLRGIR 360 Query: 371 KKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAM 430 K + +P IE +D S+I G V +V +++YRK+ + K QDD Sbjct: 361 KSAGITRVPYAIECFDISNIQGRQTVASLVRFRNARPERDRYRKYRI--TATKGQDDFRS 418 Query: 431 MRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVEN 490 M V+ RR ++ ++ PD++++DGGKGQL+AA L+ V++ Sbjct: 419 MYEVVYRRALRVAEDN--------------WDLPDLILIDGGKGQLNAAYAALRDCGVQD 464 Query: 491 RITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK 550 + + SIAK RS + KGE + +YF+ R+RDEAHRFAIT HR RK Sbjct: 465 EVDLASIAKTEGRSGVDRIYVHGKGEPCDFSSNKKGIYFLMRVRDEAHRFAITYHRGLRK 524 Query: 551 -KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 K S +D + GIG RK LLL FG+V+ I ++ E LA ++G++K+ A I Sbjct: 525 EKTLASQMDGVPGIGKKRKFLLLNHFGSVEKIKGATAEELAYVKGMTKQAARNIKEFLR 583 >gi|256847024|ref|ZP_05552470.1| excinuclease ABC, C subunit [Lactobacillus coleohominis 101-4-CHN] gi|256715688|gb|EEU30663.1| excinuclease ABC, C subunit [Lactobacillus coleohominis 101-4-CHN] Length = 603 Score = 448 bits (1153), Expect = e-123, Method: Composition-based stats. Identities = 172/614 (28%), Positives = 282/614 (45%), Gaps = 40/614 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M +I G+++YVGKA NL+ R++SY ++HT ++ M++++ + +T T Sbjct: 13 LPDKPGCYIMKNINGQIIYVGKAKNLKNRVRSYF-KSSHTGKVAAMVAEVADFETIITST 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E+ LLE +I++ +P FNI L+ +PYI IT+ + P + YFGP+ Sbjct: 72 NKESFLLEITLIQKHQPYFNIKLKQGTGYPYIKITN-ERDPQIMITGQIKKDGAYYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A E+T++ +Q+ F LR C RPCL + + +C G C + +KY + Sbjct: 131 PNVYAAEETVHFIQKVFPLRRCNGYQ----GRPCLYYHLGQCLGACFKTVPKDKYERQIK 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 K FL+G +K + + M A K +YE A RD++ + I Sbjct: 187 RIKSFLNGNTGQVKRHLTKQMEAAAAKMEYERAAEIRDQIHYIEVTVEKQKIISSDETPR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ Y +K IQ F + + + P Sbjct: 247 DLFNYYMDKGWLSIQVFFIRQARLMKREKRLFPIVDTAVEEMTSFILQFYHRRNNILPRE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358 ILL + EI V + P++GEK ++ A NA Sbjct: 307 ILLPAGLPNKEISEIL-------GVPVRTPQRGEKADLMSMAEENAQLSLSEKFRLLELD 359 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + +K+ T LP +IE +D+SHI G V MVV + K YRK Sbjct: 360 KSKTTGAMKEITDALGLPSG-HKIEAFDHSHIQGADPVSAMVVFIDGEPAKKLYRK-YKL 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + D+ A + V+ RR+S+L+K + PD++ +DGG+ Q++A Sbjct: 418 KTVINHADETASTKEVIRRRYSRLLKENQ--------------PMPDMIFMDGGEIQMNA 463 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 + VL + ++ I ++ + K K + F E + LN R Y +QR++DE H Sbjct: 464 VKDVL-ENELDLSIPVVGMVKNDKHQTA-DLLFGDHNEHVDLNPRSQAFYLVQRIQDEVH 521 Query: 539 RFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT H K K + S LDEI G+GP + L+++FG++ I+ +S + + ++ GI++ Sbjct: 522 RFAITFHHKVHTKHSLSSRLDEIKGVGPRTRNKLMKNFGSLSKIAAASVDDIHAL-GINR 580 Query: 598 KIACKIYNHFHKNT 611 A I KN Sbjct: 581 PTAQLIKVSLQKNA 594 >gi|291296770|ref|YP_003508168.1| excinuclease ABC subunit C [Meiothermus ruber DSM 1279] gi|290471729|gb|ADD29148.1| excinuclease ABC, C subunit [Meiothermus ruber DSM 1279] Length = 598 Score = 448 bits (1153), Expect = e-123, Method: Composition-based stats. Identities = 188/609 (30%), Positives = 285/609 (46%), Gaps = 35/609 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PGVY R++YVGKA NL+ R+ SY H+ RI + + F V Sbjct: 9 LPETPGVYLWK-TGERIVYVGKAKNLKARVTSYFHAEGKGLRI---CQEATQLDFIVVRD 64 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 EVEALLLEAN+IK +P +N+L++DDK +P++ +T + + P L R Y+GPF Sbjct: 65 EVEALLLEANLIKHHRPHYNVLMKDDKHYPFLKLT-QEEWPMLMVVRRVQDDGARYWGPF 123 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 AV + + R F LR + F+ R PCL + RC PC G+ +Y V Sbjct: 124 PDASAVRRIKRLVDRFFPLRKNSGFPFKKRRYPCLNHAMGRCLAPCVGQADPAQYQMTVR 183 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR----LAALSHIQNHNDSIYNR 241 + + L G L E + + M QA +D+E A RD+ + Q D Sbjct: 184 QVENLLDGKIEVLYESLEQQMRQAARNQDFERAAEIRDQISAVRSFFGTSQQAYDPELGD 243 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 +D + A IQ GQ G + F++ E+++A++L FLR +Y + Sbjct: 244 LDFLGFARAGDYALIQHYQVRGGQMLGRISRFVEGVKEASDAELLEAFLRDYYLEATPLP 303 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ--KLSTE 359 ++L E +F G KV++ VP++GEK ++IE A NA + KL Sbjct: 304 PLVLLPFELEAQEAFSAFLSSKGRKVEVRVPQRGEKTRLIELAQHNAQTALQTELKLMER 363 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 LK + L P RIE YD S+++G S VG + V K +YR+ + Sbjct: 364 KGDHPGLKGLMEVLGLTRRPYRIEGYDISNLLGESVVGSITVFEGGRPKKAEYRRIKIRG 423 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD M + RRF+ + + PD++++DGG GQ+ AA Sbjct: 424 LKGQP-DDFFSMEQTILRRFTGSLAEQ--------------MPIPDLILIDGGLGQVRAA 468 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 Q L++ +E I ++ +AK E + G+ + L + P L + RDE HR Sbjct: 469 QKALQQAGLE--IPLVGLAKRE------ETLVLPDGKTIALPLNHPALQLLIYQRDETHR 520 Query: 540 FAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 + HRK R +KA S D+I GIGP RK L+ F T++ + S E LA + G K+ Sbjct: 521 NGLEFHRKLRNQKALKSIFDDIKGIGPARKLALMNHFSTLEELKAMSVEELAKLPGFDKR 580 Query: 599 IACKIYNHF 607 A + Sbjct: 581 SAQAVLKAL 589 >gi|332096744|gb|EGJ01735.1| excinuclease ABC, C subunit [Shigella boydii 3594-74] Length = 572 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 194/562 (34%), Positives = 301/562 (53%), Gaps = 32/562 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + ++++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G K+ + +G++ + ++ A NA + T K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP + R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I + + PDV+++DGGKGQ Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V +N ++ +AKG R AG+E F + E L P L+ IQ Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEDEGFSLPPDSPALHVIQ 531 Query: 532 RLRDEAHRFAITTHRK--RRKK 551 +RDE+H AI HRK RR K Sbjct: 532 HIRDESHDHAIGGHRKNGRRSK 553 >gi|313884825|ref|ZP_07818577.1| excinuclease ABC, C subunit [Eremococcus coleocola ACS-139-V-Col8] gi|312619516|gb|EFR30953.1| excinuclease ABC, C subunit [Eremococcus coleocola ACS-139-V-Col8] Length = 610 Score = 448 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 162/617 (26%), Positives = 284/617 (46%), Gaps = 43/617 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D G ++YVGKA L+ R++SY + T + T ++S+I + F VT + Sbjct: 28 LPNEPGCYIMKDKNGHIIYVGKAKILKNRVRSYFRGAHDT-KTTKLVSEICDFEFIVTNS 86 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 EAL+LE N+I++ KP++NI L++ +PY+ IT K K P L G+YFGPF Sbjct: 87 NKEALILEINLIQKYKPQYNIRLKEGTMYPYLKIT-KEKDPQLIITNTVKNDGGTYFGPF 145 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A +T L + + L + R C + + +C GPC E+ E Y + Sbjct: 146 PNVYAATQTQQVLYKAYPL----RHCGLNEKRACFYYHLGQCIGPCDHEVPQEVYDRQID 201 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNRM 242 + K+F G +K + M A K ++E A +RD++ + + + Y+ M Sbjct: 202 KIKRFFKGDVAEIKTALKEKMETAAEKMEFEQAADYRDQIRYIETTVEQQNVMNKDYDNM 261 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ +K+ IQ G + + P+ Sbjct: 262 DVFAYVMDKSWLSIQVFMLRQGSILKRKAIIEPSYGNPEEEVTSLIARFYKEQAQIQPKA 321 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358 IL+ + + L + ++ P +G+K I+E NA + + Sbjct: 322 ILVPSDVDHELL-------HDFLDLPVSTPLRGKKHSILELCEKNAKIALDEKFRLDAMS 374 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 +++ +P IE +D+S+I G +AV MVV + YRK+ + Sbjct: 375 HKKTVQAVQELADALNIPQAEH-IESFDHSNIQGTNAVSGMVVYTHGKEDRKNYRKYKIK 433 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ ++ A + V+ RR+S+L+K E+ L PD++++DGG Q+ A Sbjct: 434 T--VEGANEFASTQEVIRRRYSRLLKEEKPL--------------PDLILMDGGIVQVRA 477 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A+ V++ +L + I + + K E + L+ R +QR+++E Sbjct: 478 ARDVIENELGLA--IPVAGMVKNDHHKTAA-LLDGYSEEIIYLDPRSQAFRLLQRVQEEV 534 Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HR+AI+ HR R K + S L+EI+G+GP + LL+ F +++ I +S E + ++ GI+ Sbjct: 535 HRYAISYHRNVRSKNTFASILEEIDGVGPKTRSKLLKHFKSLQNIKIASSEEIQAL-GIN 593 Query: 597 KKIACKIYNHFHKNTSH 613 +K A + +K + Sbjct: 594 QKTAIAVLEALNKTSRD 610 >gi|317490666|ref|ZP_07949133.1| excinuclease ABC [Eggerthella sp. 1_3_56FAA] gi|316910228|gb|EFV31870.1| excinuclease ABC [Eggerthella sp. 1_3_56FAA] Length = 731 Score = 448 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 177/630 (28%), Positives = 304/630 (48%), Gaps = 47/630 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY D +G+V+YVGKA L+ R++ Y++ + +I ++ QI++ + V Sbjct: 119 SVPTLPGVYLWKDKSGQVIYVGKAKQLRARMRQYVNFQDERAKIPLLVDQIDSFDYIVVE 178 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 E E+L+LE N+I + P FN +DDKS+P+I +T PA+ R+ YFGP Sbjct: 179 NEHESLVLEKNLINQHAPFFNADFKDDKSYPFIALTKGDVFPAIKYTREKHRADTKYFGP 238 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFR---------------HRTRPCLLFQIKRCSG 169 + A ++ +R L + + + +R H RPC + G Sbjct: 239 YTDSRAARDMVDIARRVVPLCATSCADWRQLKRRLEKDPLALMSHDARPCFDAHVGLGPG 298 Query: 170 PCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALS 229 C G I+ E+Y V ++FLSG + +++ M +A + D+E A + R+ ++ Sbjct: 299 ACCGGITPEEYRVHVKRIERFLSGQHREFVDELQAEMQEAAAELDFERAARIKARIDTIN 358 Query: 230 HIQNHNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQIL 286 + + ++ R D L+ + +A + G+ + F L + + +L Sbjct: 359 SLTDKQHAVSTRNLDADVVGLFREETVAGVHVFMVREGRIINSNEFVLDRGKDVPDDDLL 418 Query: 287 SYFLRQFYT-DKPCPENILLSEEAEETSLLEISFFKQ----YGYKVKITVPKQGEKRKII 341 FL ++Y P ++L +E E+ + +E ++ YG KV+IT P++GEK +++ Sbjct: 419 HMFLLRYYDATTSIPHEVILRDEPEDKAAMEAWLTEKLASAYGAKVRITAPQKGEKAELV 478 Query: 342 EQALINAHRSHTQKL----STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVG 397 A NA + + + L AL P RIE +D S I G V Sbjct: 479 GMAETNAKHTLMRYKVRTNYDDKRINNALLQLESALALDEPPMRIECFDISTIHGSYTVA 538 Query: 398 CMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE 457 MVV KNQYR+F + + +D M+ V+ RR+ + + Sbjct: 539 SMVVFTNGKPDKNQYRRFKIKT-PLDEANDFLSMQEVMGRRY-----------APERMAD 586 Query: 458 YSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGE 516 F S PD++ILDGGK QLSAA + +++ +++ I + +AK + E F Sbjct: 587 ERFGSKPDLIILDGGKPQLSAALEMFERMGIDD-IAMCGLAKRDE-----ELFVPWQDTG 640 Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSF 575 +VL LY ++++RDEAHRFAIT HR+ R K S LD++ G+GP+RK+ LL++F Sbjct: 641 PVVLPSGSASLYLVKQVRDEAHRFAITFHRELRGKGMTASILDDVTGMGPVRKKALLKAF 700 Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYN 605 + K + ++ E + + ++A ++Y Sbjct: 701 KSFKNLKSATLEEIKEARVVPVEVAEELYR 730 >gi|302340538|ref|YP_003805744.1| excinuclease ABC, C subunit [Spirochaeta smaragdinae DSM 11293] gi|301637723|gb|ADK83150.1| excinuclease ABC, C subunit [Spirochaeta smaragdinae DSM 11293] Length = 601 Score = 448 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 178/606 (29%), Positives = 290/606 (47%), Gaps = 31/606 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 P PGVY M D G ++Y+GKA NL+KR+ SY N + ++ +I+ I + T Sbjct: 11 DFPGSPGVYLMRDTGGVIIYIGKAKNLKKRVSSYFSGN-KDVKTRVLVDRIDRIEYITTG 69 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 E EALLLE N+IK PR+NI L+D KS+P I IT P +++ R YFGP Sbjct: 70 NEYEALLLENNLIKEHTPRYNINLKDGKSYPVIRIT-AEPFPRIFRTRRIIQDGSEYFGP 128 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + +V ++ ++ ++R F LR C + R PCL + I RCS PC G+I E Y+ V Sbjct: 129 YTNVGDIDVYLDLIERLFPLRKCK-GKVKKREHPCLYYHIGRCSAPCCGKIDRESYLRHV 187 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRL---AALSHIQNHNDSIYNR 241 A++ LSG L + R M +A + D+E A RD + + Q D Sbjct: 188 DGARRLLSGETEELLVGLRRRMEEAASRLDFEKAAELRDTISAVETVGKDQEVVDFSSES 247 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D + N +L G+ G + + S+ + S F ++Y + Sbjct: 248 RDYVACAMNDSLCSFAVFRMRDGKLVGR--DLYRGRALSSEDEAFSQFFLRYYGELKDIP 305 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 + + +T L+ F + V I +P++G+ +I+ L NA ++L E + Sbjct: 306 ETVFTSGGFDTELVASFFKNERNKDVSIIIPEEGKHSRILRMVLDNALHDLEKRLKAEAN 365 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 L++ L +P+RIE +D + + G V MV K YR+F++ Sbjct: 366 IPG-LEELRTILGLKKLPRRIEGFDIAQLSGKYPVASMVSFYNGNPDKGSYRRFHIKT-L 423 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 DD +R V+ RR+++++ PD+V++DGGKGQ++AA+ Sbjct: 424 EGKIDDYEAIREVVARRYTRVVNEG--------------IERPDLVLIDGGKGQVNAARA 469 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 +L + +++ + +I +AK + E F GE + L + L +Q +RDE+HRFA Sbjct: 470 ILNAVGLKD-VAVIGLAKQFE-----EIHFPGSGEPVRLPEGNEALRVLQAVRDESHRFA 523 Query: 542 ITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 ++ RKK S L+ I GIG R LL +FG+++ I+ +S + +A I G + A Sbjct: 524 TGFNKHLRKKGVKLSSLESIPGIGAKRAAALLSTFGSLEAIAEASVDKIAEIAGNGQDGA 583 Query: 601 CKIYNH 606 + Sbjct: 584 ADVLQA 589 >gi|304383739|ref|ZP_07366198.1| excision endonuclease subunit UvrC [Prevotella marshii DSM 16973] gi|304335263|gb|EFM01534.1| excision endonuclease subunit UvrC [Prevotella marshii DSM 16973] Length = 615 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 162/628 (25%), Positives = 308/628 (49%), Gaps = 48/628 (7%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +P PG YQ D + ++Y+GKA +L+KR+ SY ++ ++S+I +I +TV Sbjct: 18 QSLPNMPGSYQFYDSSHTIIYIGKAKDLKKRVASYFRKEVDRYKTKVLVSKIQDISYTVV 77 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE +ALLLE N+IK+ PR+N+LL+D K++P I IT+ P ++K R + G+Y+G Sbjct: 78 NTEEDALLLENNLIKKYNPRYNVLLKDGKTYPSICITN-EFFPRIFKTRTINKKLGTYYG 136 Query: 124 PFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 P++ V ++ ++ + + + R+C + + + + +PCL + I+ C PC + + E Sbjct: 137 PYSYVGSMHAALDLINKLYKPRTCRFPITQEGILKKKYKPCLKYHIQNCDAPCIAKQTHE 196 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y+ + +A++ L G + + + M Q + +E A + + + + ++ + Sbjct: 197 EYLANIAQAREILKGNTREVSKYLYNEMQQKASELKFEEAEELKKKYLIIKNFCEKSEVV 256 Query: 239 YNRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 + + ++ N A I G + TF K + ++ +L + + Sbjct: 257 SHTITDIDVFSIANDTNKKNAYINYIHVKNGVINQSFTFEYKRKLDESDTHLLLMAIPEI 316 Query: 294 YTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 +L + + +PK G+K+++++ + +N + Sbjct: 317 RERFHSTAREILVPLEIDWKI----------KDALFVIPKSGDKKRLLDLSEMNCKQYQF 366 Query: 354 QKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 +L E ++K+ +K LP+IP IE +DNS+I G +AV VV Sbjct: 367 DRLKQAEKLNPEQKLVRLMKELQEKLKLPNIPYHIECFDNSNISGTNAVAGCVVFKGFKP 426 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 K YR++N+ V+ +D A M+ V+ RR+S++++ + P ++ Sbjct: 427 SKKDYRRYNIKT--VEGPNDYASMQEVVYRRYSRMLEEG--------------STLPHLI 470 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPIL 527 I DGGKGQ+ + V++ + I I +AK R E + + L + + Sbjct: 471 ITDGGKGQMEVVRTVIED-QLGLSIPIAGLAK-DNRHRTNELLCGFPPQTVALKVNSELF 528 Query: 528 YFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586 + + +++DE HR+AIT HR++R K A +S LD+I GIG + LL S +V+ I ++ Sbjct: 529 HKLTQIQDEVHRYAITFHREKRSKNALHSELDQIKGIGSKTRDALLGSLRSVESIKEANI 588 Query: 587 ETLASIEGISKKIACKIYNHFHKNTSHT 614 +TL I I + A +Y +FH+ T+ T Sbjct: 589 QTLTKI--IGQAKAHLVYQYFHEETAET 614 >gi|306521700|ref|ZP_07408047.1| excinuclease ABC subunit C [Clostridium difficile QCD-32g58] Length = 589 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 191/595 (32%), Positives = 310/595 (52%), Gaps = 40/595 (6%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFT 61 +++P PGVY M D ++YVGKA +L+ R++ Y S+ NHT ++ M+ I + Sbjct: 8 LKKLPSEPGVYLMKDKYDHIIYVGKAISLKNRVRQYFQSSKNHTSKVKSMVKNIYKFEYI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 +T +E+EAL+LE N+IKR +P++N++LRDDK++PYI +T P + K R + Y Sbjct: 68 ITDSELEALILECNLIKRYRPKYNVVLRDDKTYPYIKVTTNEDYPRILKVRRVLKDKAKY 127 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCA---DSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 FGP+ ++ AV T+ + T+ +RSC D +++TRPCL I +C GPCTG +S E Sbjct: 128 FGPYTNITAVNDTLELISSTYPIRSCKIDIDKAIKNKTRPCLNLHINKCLGPCTGNVSKE 187 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + + E LSG L E + MN++++ +E A ++RD++ +L + Sbjct: 188 EYGKMIEEIIMCLSGKEEKLMELLKEKMNESSMNFRFEEAAVYRDKIKSLEEMIQKQKID 247 Query: 239 YN----RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 D ++ N AC+Q F G+ G F L+ +S A ILS F++QFY Sbjct: 248 ATVSDLNQDVVAMARAHNEACVQVFFIRNGKIVGREHFILEGVMDSPRASILSSFVKQFY 307 Query: 295 TDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS-- 351 ++ P+ +++ +E E++S+LE + G KV I VP++GEK+ ++E NA Sbjct: 308 NEQEYIPKELIIEDEIEDSSILEEWLSSKKGQKVTIRVPQKGEKKSLVEMVRKNAVEYLE 367 Query: 352 --HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 L++ + L +P RIE YD S+I G ++G MVV K Sbjct: 368 KFSDMNKRKYEKSIGALEELKQILNLEKLPIRIEAYDISNIQGVDSIGSMVVYTNAKKDK 427 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 +YR++ + V +D M +++RR + PD+++L Sbjct: 428 KEYRRYKIKT--VIGPNDYDSMAEIVDRRLKH-------------------GNLPDLILL 466 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ+SA + VL+ +V+ I + + K K + K + + L+ + F Sbjct: 467 DGGKGQVSAVKKVLELNDVD--IPLWGMYKDDKHRTKG---LICKEKEIELDKTTNLYRF 521 Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583 I +++E H +AIT HR R KA S LD+I GIG RK+ LL F V+ I + Sbjct: 522 IASIQEEVHNYAITYHRSLRNKALTKSILDDIQGIGEKRKKSLLNHFKDVEAIKK 576 >gi|269215596|ref|ZP_06159450.1| excinuclease ABC subunit C [Slackia exigua ATCC 700122] gi|269131083|gb|EEZ62158.1| excinuclease ABC subunit C [Slackia exigua ATCC 700122] Length = 673 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 166/637 (26%), Positives = 292/637 (45%), Gaps = 49/637 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P PGVY + AG V+YVGKA L+ R++ Y++ + +I +++QI+ + Sbjct: 25 ELDSVPTRPGVYLWKNAAGEVIYVGKAKQLRARMRQYVNFQDDRAKIPLLVAQIDTFEYI 84 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V E E+L+LE N+IK+ P FN +DDKS+P+I +T PA+ R+ Y Sbjct: 85 VVENEHESLVLEKNLIKQYAPFFNADFKDDKSYPFIALTKGDVFPAIKYTREKHVATTRY 144 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT-----------------RPCLLFQI 164 FGP+ A ++ ++ + + + +R RPC + Sbjct: 145 FGPYTDGRAARSLVDIARKLVPVCAARCAEWRRMNRRLAAGDLDAFLSAEGLRPCFDAHV 204 Query: 165 KRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR 224 GPC G I+ E Y V +KFLSG + ++ M+ A + D+E A + R Sbjct: 205 GLGPGPCCGRITPEGYRRNVERIEKFLSGSHAEFVRELTDEMHAAAAELDFERAARMKAR 264 Query: 225 LAALSHIQNHNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST 281 + ++ + + ++ R D + + +A + G+ F L + Sbjct: 265 IDTVNSLTDRQHAVSARNLDADVVGIAREETIAGVHVFMVREGRIINGNEFVLDKGRDIP 324 Query: 282 NAQILSYFLRQFYT-DKPCPENILLSEEAEETSLLEISFF----KQYGYKVKITVPKQGE 336 + +L FL ++Y P +++ E E+ +E +G +V+ITVP++GE Sbjct: 325 DENLLHDFLLRYYDATTSIPREVIVDCELEDAEAVEGWLTGKLASVHGARVRITVPRRGE 384 Query: 337 KRKIIEQALINA----HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMG 392 K +++ A NA +R + + L AL P RIE +D S I G Sbjct: 385 KSELLALARQNAGHTLNRYKVRTNYEDKRVNAALLQLESALALDGPPMRIECFDISTIHG 444 Query: 393 CSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFH 452 V MVV + NQYR+F + + +D M+ V+ RR+ Sbjct: 445 SYTVASMVVFTDGRPDTNQYRRFKIKT-PLDEANDFLSMKEVIGRRY-----------AP 492 Query: 453 PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV 512 + + F PD++ILDGG QL+A + +++ I + +AK + E F Sbjct: 493 ERMADERFGKKPDLLILDGGLPQLNAVLDQFADMGIDD-IPVCGLAKRDE-----ELFVP 546 Query: 513 KKG-EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRL 570 + +VL LY ++ +RDE+HRFAI HR+ R K S LD++ G+GP+RK+ Sbjct: 547 WQSTGPVVLPGGSASLYLVKHVRDESHRFAIAFHRELRGKGMTKSVLDDVAGLGPVRKKA 606 Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 LL++ G + +S + + ++ + +++A +++ Sbjct: 607 LLKAMGGFTRLRAASLDDILAVRAVPEEVAREVFAVL 643 >gi|331701134|ref|YP_004398093.1| UvrABC system protein C [Lactobacillus buchneri NRRL B-30929] gi|329128477|gb|AEB73030.1| UvrABC system protein C [Lactobacillus buchneri NRRL B-30929] Length = 610 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 172/609 (28%), Positives = 280/609 (45%), Gaps = 43/609 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M DI G+++YVGKA NL+ R++SY ++H + ++S+I + + V + Sbjct: 13 LPDMPGCYLMKDINGKIIYVGKAKNLKNRVRSYF-KSSHEGKTARLVSEIADFEYIVVSS 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDK-SFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 + EA LLE +I++ +P FNI L+ +PYI IT+ + P + G YFGP Sbjct: 72 DKEAFLLEITLIQKHRPYFNIKLKQGNGGYPYIKITN-ERDPQIKIVNTLLKDGGFYFGP 130 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + +V A E+T+N LQ+ + LR C RPCL + + +C G C + E Y + + Sbjct: 131 YPNVYAAEETVNFLQKVYPLRRCNGFQ----NRPCLYYHMGQCLGACFKVVPEETYAKQI 186 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NR 241 K FL+G + K+ + M +A K +YE A RD + + I Sbjct: 187 KRIKSFLNGNVSHAKQMLTTRMEKAAAKMEYERAAEIRDLIKYIEITVEKQKIISTDNTP 246 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D F+ Y +K IQ F + + + ++ P+ Sbjct: 247 RDIFNYYMDKGWLSIQVFFIRQSRLMKREKRLFPIIDDPEEEMVSFISQFYKQKNQILPK 306 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLS 357 IL+ + + V + P++G+KR ++E A NA Sbjct: 307 EILVPKSLPTDVIS------HVVEDVPVRTPQRGQKRDLLEMAGKNAQMVLEEKFRLLEL 360 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 E +K+ T + +IE +D+SHI G V MVV + KN YRK+ L Sbjct: 361 DESKTTGAMKELTDAMGIA-PGHKIEAFDHSHIQGADLVSAMVVFVDGQPNKNLYRKYKL 419 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 V D+ A + V+ RR+++L+K PD++++DGG Q++ Sbjct: 420 KT--VDHADEAASTKEVIRRRYTRLLKEH--------------AEMPDLILMDGGVIQMN 463 Query: 478 AAQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 A + V + +L + I + + K + F L L+ + Y +QR++DE Sbjct: 464 AVKDVLVNELGL--NIPVGGMVKNTHHQTA-DLLFGDNDTPLQLDPKSQGFYLLQRIQDE 520 Query: 537 AHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 HRFAIT H K K + S LD I G+GP + LL+ FG+++ IS + E L + GI Sbjct: 521 VHRFAITYHHKVHTKNSLSSRLDSIAGVGPKTRNKLLRKFGSLRKISNAPIEELRQL-GI 579 Query: 596 SKKIACKIY 604 S+ +A I Sbjct: 580 SETVAQTIK 588 >gi|302344815|ref|YP_003813168.1| excinuclease ABC, C subunit [Prevotella melaninogenica ATCC 25845] gi|302149396|gb|ADK95658.1| excinuclease ABC, C subunit [Prevotella melaninogenica ATCC 25845] Length = 638 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 164/625 (26%), Positives = 310/625 (49%), Gaps = 50/625 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 MPE PG YQ D ++YVGKA NL++R+ SY H + ++S+I++I ++V Sbjct: 46 NMPEKPGTYQFYDNEKTIIYVGKAKNLKRRVSSYFHKEVDRFKTKVLVSKIHDISYSVVK 105 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALL+E +IK+ KP++N+LL+D K++P I +T+ P ++K R + G+++GP Sbjct: 106 TEEDALLIENQLIKQYKPKYNVLLKDGKTYPSICVTN-EYFPRIFKTRTINKRYGTFYGP 164 Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + ++ ++ +++ + R+C + + + + +PCL + + C PC + S E Sbjct: 165 YSHIGSMYAILDIIKKVYKPRTCRFPITKEGIEQGKYKPCLEYHLHNCGAPCINKQSYED 224 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y E + +A++ L G ++++ + + M + + +E A + + R AL + ++ + Sbjct: 225 YQEAIKQAREVLKGNTRDVQKLLKKKMEKYAEELRFEEAELCKQRYLALDNFAAKSEIVS 284 Query: 240 NRMDCFSLY-----HNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + + ++ + A I G + T+ K + ++ ++L+ + + Sbjct: 285 HTITDVDVFTIVSDDTRKNAFINYIHVTNGAINQSFTYEYKRKLDESDEELLNEAIPEIR 344 Query: 295 TD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 + I++ E + + +P++G+K ++E + +NA + Sbjct: 345 ERFNSTAKEIIVPFELDFK-----------VKGAEFFIPQRGDKHHLLELSEMNAKQYKF 393 Query: 354 QKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 +L E ++++ K L +P IE +DNS+I G AV +V Sbjct: 394 DRLKQTEKLNPEQKQTRLMRELQDKLKLSKLPYHIECFDNSNISGSDAVAGCIVYKGMKP 453 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 K YRK+N+ V DD A M+ V+ RR+S++ + PD++ Sbjct: 454 SKKDYRKYNIKT--VVGPDDYASMQEVVRRRYSRMQEEG--------------TPLPDLI 497 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPIL 527 I DGGKGQ+ + V++ + I I +AK + E F + + L+++ + Sbjct: 498 ITDGGKGQMEVVREVVEDE-LHLNIPIAGLAKDDRHRT-NELLFGFPQQTIALDIKGELF 555 Query: 528 YFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586 + +++DE HR+AI+ HR +R KA +S LD+I GIGP K LL+ TVK I + Sbjct: 556 KVLTQIQDEVHRYAISFHRDKRSKAQLHSELDDIKGIGPKTKDALLKKLKTVKRIKEADL 615 Query: 587 ETLASIEGISKKIACKIYNHFHKNT 611 + L + G SK A +YN+FH N Sbjct: 616 QELTEVIGASK--ATIVYNYFHANQ 638 >gi|329926907|ref|ZP_08281310.1| excinuclease ABC, C subunit [Paenibacillus sp. HGF5] gi|328938894|gb|EGG35267.1| excinuclease ABC, C subunit [Paenibacillus sp. HGF5] Length = 667 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 158/657 (24%), Positives = 269/657 (40%), Gaps = 64/657 (9%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M + G ++YVGKA L+ R++SY + H + ++S+I + + VT + Sbjct: 25 LPDQPGCYLMKNHEGTIIYVGKAKVLKNRVRSYFTGS-HNGKTQMLVSEIRDFEYIVTGS 83 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK +PRFN+LL+DDK++PY+ IT++ P L R + YFGP+ Sbjct: 84 NMEALILECNLIKTHQPRFNVLLKDDKTYPYLKITNEE-HPRLEVTRRVLKDKAKYFGPY 142 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + A ++T L R + LR C CL + + +C PC E+ Y + Sbjct: 143 PNAYAAQQTKKLLDRMYPLRKCGVMPKE----VCLYYHMGQCLAPCVKEVPKSAYEQITG 198 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E FLSGG+ +K+++ R M +A +E A RD++ + + Sbjct: 199 EITSFLSGGHEEIKKELQRKMQEAAEDLYFERAKELRDQIIHIDTLMEKQKITTTDTRDR 258 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q + G+ F+ Q+Y+D P Sbjct: 259 DVFGYAVDKGWMCVQILYMRQGKMVQRNKSVF--PFYGDAHSDFMSFIAQYYSDNPALPQ 316 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 +L E G GE + ++ +A + L + Sbjct: 317 EILLPGPLLAE--EAGSETAIGSAGDQGARNAGEAAETEKKLTTDASEEQREILVQAQAE 374 Query: 363 QMILKDFTKKFALP------------------HIPKRIEIYDNS-----------HIMGC 393 Q DN+ Sbjct: 375 QAEAAGLVDAAGGAAALQEWLGVKVHVPQRGLKKQMVGMASDNAKVSLDEKFRLIERDEE 434 Query: 394 SAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVL--------ERRFS----- 440 +GE +++ R ++++ + + M + R++ Sbjct: 435 RTSVAAANLGEVIGLQSLNRIEAFDNSNIQGANPVSAMVVFTNGKPDKKEYRKYKIRTVQ 494 Query: 441 ---QLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK-KLNVENRITIIS 496 E + ++ PD++++DGGKGQ+SAA VL+ +L + + + Sbjct: 495 GPDDYDTMREVIRRRYERVLKENLPLPDLIVVDGGKGQISAAIDVLENELGL--FVPVCG 552 Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YS 555 + K K + E + L Y +QR++DE HRFAI+ HR++R K+ S Sbjct: 553 LVKDAKHKT-TQLMVGDPPEPVSLPRDSQEFYLLQRIQDEVHRFAISFHREQRGKSMVTS 611 Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 LD I GIG R+++LL+ FG+VK I +S E + I +K+A +I N + S Sbjct: 612 KLDSIPGIGEKRRKMLLKHFGSVKKIKEASVEDFKPL-SIGEKLATEILNALREEES 667 >gi|293374137|ref|ZP_06620471.1| excinuclease ABC, C subunit [Turicibacter sanguinis PC909] gi|292647240|gb|EFF65216.1| excinuclease ABC, C subunit [Turicibacter sanguinis PC909] Length = 593 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 180/613 (29%), Positives = 293/613 (47%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D G+V+YVGKA L+ R+KSY H + ++ +I + + +T + Sbjct: 12 LPMNPGCYLMKDAKGQVIYVGKAKRLKNRVKSYFIGT-HNGKTARLVREIVDFEYIITSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E+EAL+LE N+IK+ P++NI+L DDK +PYI IT+ P L R G YFGP+ Sbjct: 71 ELEALVLEINLIKKYDPKYNIMLTDDKHYPYIKITN-EVHPRLVTTRKIKKDGGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + A +TI L + + LR C + CL + I +C PC +I+ E Y ++ Sbjct: 130 PNARAANETIRLLNKLYPLRKCHTIP----QKVCLYYHIHQCLAPCEFKITPEDYKPYIE 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 + +FL G ++K+ + M +A K ++E A +RD +A + N Sbjct: 186 QITRFLKGDYSDVKKDLVSRMEEAAEKLEFERAKEYRDLIANIEATVEKQKMTMNDFIDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F Y L C+Q F G+ E T +L++ R + + P+ Sbjct: 246 DVFGYYTMNGLICVQVFFIRQGKVIEREVSIFD-GIEDTEEAVLTFIGRFYQGNNLKPKE 304 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS----T 358 I + + L ++ K PK G+K++++E A+ NA + ++KL Sbjct: 305 IFIPATLNQELLSQLLDIKVIV-------PKIGDKKELVELAMKNAEMALSEKLQLIEKQ 357 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E ++ + +P RIE +DNSH G AV MVV + K QYRK+ + Sbjct: 358 EERTLKAVERLGEVLNIPTP-HRIEAFDNSHHQGMDAVSAMVVFTDGRPDKKQYRKYKIQ 416 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 DD MR V+ RR+ +++ + PD++++DGGKGQ++ Sbjct: 417 TT--SDGDDYQAMREVIYRRYFKVLNED--------------LPAPDLIVIDGGKGQVAI 460 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 AQ VL LN+ I ++ + K K + E + L R + + R++DE H Sbjct: 461 AQEVLSSLNMT--IPVVGLVKDEKHRTSF-LLDGRDMEEIKLPTRSNVFQLLTRIQDEVH 517 Query: 539 RFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RF I H + +K+ S LDEI G+GP RKRLL+Q+FGT++ + + + + G Sbjct: 518 RFVIGFHHQSAQKRTLTSILDEIPGVGPKRKRLLIQNFGTLERMVEADEQEYLKL-GFPA 576 Query: 598 KIACKIYNHFHKN 610 ++ +I + Sbjct: 577 EVIRRIKTFIAEE 589 >gi|261415633|ref|YP_003249316.1| excinuclease ABC, C subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372089|gb|ACX74834.1| excinuclease ABC, C subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327821|gb|ADL27022.1| UvrABC system protein C [Fibrobacter succinogenes subsp. succinogenes S85] Length = 623 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 174/619 (28%), Positives = 289/619 (46%), Gaps = 38/619 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITH--MISQINNIRFTV 62 ++P PGVY M + G+++Y+GKA L+ R+ SY ++H M+ I +I + + Sbjct: 14 ELPLLPGVYIMKNAQGKIIYIGKAKVLKNRVSSYFDGSDHAGHRAATLMLPYIRDIEWII 73 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LEAN+I++ P++N+LL+DDK FPY+ + P L+ R Y+ Sbjct: 74 TESETEALILEANLIRKHTPKYNVLLKDDKHFPYLAFSVNEPFPRLFLSRSVKKDGCLYY 133 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEKYM 181 GP+ S + + + R F +R C + +R RPCL + I RC PC G ++ E+Y Sbjct: 134 GPYMSSRMIRQLQDIAARLFQIRECKLKLPLNRPVRPCLNYHIGRCGAPCAGLVTREEYQ 193 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + V + + L G +L + R M +A+ + D+E+A RD + AL H + + Sbjct: 194 KKVAQTQMLLGGKRDDLIDLWEREMLEASERMDFETAAKKRDAIQALKATSAHQKTDVSD 253 Query: 242 ----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 +D SL N +A + G G + L+ E +I + Q+Y D Sbjct: 254 ASLCVDVLSLKRNGTMAAAVIFEYRNGVLCGRRHYRLECKLEDDETEIFRQMVVQWYMDV 313 Query: 298 PCPENILLSEEAEETSLLEISFFKQ-----YGYKVKITVPKQGEKRKIIEQALINAHRSH 352 + ++ T + E +Q +KV +T P++GEK ++ A NA Sbjct: 314 EFIPGEIATDVPLPTDMSERLSIEQALASKTTHKVVLTNPQRGEKLGFLKLASANADMIL 373 Query: 353 TQKLSTEISHQMI---LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 + + + I + + K L P RIE D SH+ G + V +V K Sbjct: 374 VEMRAEVQKYSEIDSSVFELQKVLGLKKTPFRIECVDISHLSGTNTVASLVAFKNGRPDK 433 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 + YRKF + V DD A MR V+ RR +L + PD+ + Sbjct: 434 SNYRKFIIKT--VTGVDDFASMREVMTRRIRRLEEEG--------------IPMPDLWVC 477 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQ+ A +LK+L + + +I +AK + E F +++VL+ P L Sbjct: 478 DGGKGQVDATMQILKELGHDKDLPLIGLAKRLE-----EIVFPDDRKSIVLHRTSPALKL 532 Query: 530 IQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 +Q RDEAHRFAIT R +RKK ++ G+G + +L + + + + E + Sbjct: 533 LQNARDEAHRFAITYQRSKRKKDLEVEWLKMPGVGHETRIKILSKYKSAEAFMDAPLEDI 592 Query: 590 ASIEGI--SKKIACKIYNH 606 + G K+ ++ + Sbjct: 593 IDLLGKVRGAKLREQVAEY 611 >gi|256827142|ref|YP_003151101.1| excinuclease ABC, C subunit [Cryptobacterium curtum DSM 15641] gi|256583285|gb|ACU94419.1| excinuclease ABC, C subunit [Cryptobacterium curtum DSM 15641] Length = 682 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 179/646 (27%), Positives = 300/646 (46%), Gaps = 55/646 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY D AG+V+YVGKA L+ R++ Y++ + +I ++ QI + + V Sbjct: 16 SVPTLPGVYLWKDEAGQVIYVGKAKQLRARMRQYVNFQDDRAKIPLLVDQIRSFEYIVVE 75 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 E E+L+LE N+I + P FN +DDKS+P+I +T PA+ R+ YFGP Sbjct: 76 NEYESLVLEKNLINQYSPFFNADFKDDKSYPFIALTKGDVFPAIKFTREKHRADTLYFGP 135 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTR----------------PCLLFQIKRCS 168 + A I+ ++R L S + S +R R PC + Sbjct: 136 YTDSRAARNLIDIVRRIVPLCSASCSQWRQMKRIIDRDGYEAFKKNPMKPCFDCHVGLAP 195 Query: 169 GPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAAL 228 G C G I+ E+Y E + +FL G +++ +M +A D+E A + RL + Sbjct: 196 GACCGRITPEEYEENLTRVARFLRGSRREFTRELSHDMQKAAADLDFERAGRLKARLDII 255 Query: 229 SHIQNHNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQI 285 +++ ++ + D ++ + + + G+ F L ++ ++ + Sbjct: 256 RGLEDKQHAVVSDSLNADVIGIFREETITGVHVLMVREGRVINGNEFVLNKGTDVSDDDL 315 Query: 286 LSYFLRQFYT-DKPCPENILLSEEAEETSLLEISFFKQ----YGYKVKITVPKQGEKRKI 340 L FL ++Y P I+L + ++ + ++ +G +V+ P++GEKR++ Sbjct: 316 LRNFLLRYYDVATSIPREIILEKLPDDADTMGDWLTRKLANSHGARVRFAQPERGEKREL 375 Query: 341 IEQALINAHR----SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAV 396 ++ A NA + + L ALP P RIE +D S G V Sbjct: 376 LDMATTNARHTLMRYMVRTNYEDKRINEALLQLESALALPEPPLRIECFDISTFHGTYTV 435 Query: 397 GCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQ 456 MVV + K+QYR+F + + + +D M+ VL RR+ + Sbjct: 436 ASMVVFTDGRPDKSQYRRFKIKAD-LDEANDFLSMQEVLGRRY-----------APERMA 483 Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KG 515 + F PD++ILDGGK QLSAA L + V+ I + +AK + E F + Sbjct: 484 DERFGRKPDLLILDGGKPQLSAAIEQLGSMGVD--IPLAGLAKRDE-----ELFVPWQES 536 Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQS 574 +VL LY ++R+RDE+HRFAIT HR+ R K S LDE+ GIGP+RK+ LL+ Sbjct: 537 GPVVLPSGSASLYLVKRVRDESHRFAITFHRQLRGKGMTASILDEVEGIGPVRKKALLRH 596 Query: 575 FGTVKMISRSSPETLASIEGISKKIACKI------YNHFHKNTSHT 614 F + K + ++S E L + + ++A ++ YN + T Sbjct: 597 FKSFKNLRQASLEDLEASRVLPVEVARELFAVLAQYNDLREETDAA 642 >gi|212704529|ref|ZP_03312657.1| hypothetical protein DESPIG_02587 [Desulfovibrio piger ATCC 29098] gi|212672096|gb|EEB32579.1| hypothetical protein DESPIG_02587 [Desulfovibrio piger ATCC 29098] Length = 621 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 182/637 (28%), Positives = 281/637 (44%), Gaps = 54/637 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 +P PGVY D G+V+YVGKA L++R+ SY + M++ +I F Sbjct: 5 DPSSIPLSPGVYLYRDGKGQVIYVGKARILRRRVLSYFRPEGLPAKTKAMLAHAQSIEFL 64 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T TE EALLLEA++IK+ +P +NI+LRDDK + + KH P L R + Y Sbjct: 65 TTTTEKEALLLEASLIKKYRPHYNIVLRDDKQYVLFRVNIKHPFPRLEVVRKARRDGARY 124 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPF S A +T L R F LR C+D ++R RPCL + +C PC G +++E Y Sbjct: 125 FGPFTSSLAARETWKLLHRAFPLRRCSDRAMKNRVRPCLYHHMGQCPAPCMGLVTAEDYF 184 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 E V L G L +++ M A ++E A + RD++ A+ ++ Sbjct: 185 EGVRRVCDLLQGKADPLLKELHGRMEAAAEALEFEQAAVLRDQIRAVEKTVERQATVLPG 244 Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 MD L+ + + F G F+ + ++L F+ Q+Y Sbjct: 245 GGDMDVLGLFQAERGLALGLVFVRGGAMTDGRAFYWPGLTFDDAPELLFSFVGQYYEQLT 304 Query: 299 CPENILLSEE-----------------AEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 P ILL +E SLLE + ++ G V++ P+ +++ Sbjct: 305 PPPRILLPWLPAAVQETDGEDGGTDEAPDERSLLEQALSERRGGPVRLVAPQNPADNRLV 364 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVV 401 + A NA ++ E + +L+ + LP +P+RIE D SH G MVV Sbjct: 365 DVAQSNAREEARRREKLEETP--LLERLARALHLPDVPRRIECVDVSHTGGRQTRVGMVV 422 Query: 402 VGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFP 461 + +QYR + + DD + + RR S P Sbjct: 423 YEDGRPSPDQYRAYAMPD----GGDDYGTLYDWVARRL------------------ESGP 460 Query: 462 SWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG------PKRSAGM---EKFFV 512 WPD++++DGG+GQL+ + L + + +IAK R AG F Sbjct: 461 PWPDLMLIDGGRGQLAVVERALNDAGKPDFFPLAAIAKARDEAGHADRRAGNVADRIFLP 520 Query: 513 KKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYS-PLDEINGIGPLRKRLL 571 + L L L F+Q +RD HRFAI HRK R +AA S L + GIGP RLL Sbjct: 521 GRSNPLPLREGCAELLFLQNVRDATHRFAIGRHRKARGQAALSGELMRLPGIGPATARLL 580 Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++FG+++ + + + L + GI A ++ Sbjct: 581 WETFGSLEAMRAAGVDDLRRLPGIGASRAALLHEKLK 617 >gi|325837424|ref|ZP_08166406.1| excinuclease ABC, C subunit [Turicibacter sp. HGF1] gi|325490956|gb|EGC93254.1| excinuclease ABC, C subunit [Turicibacter sp. HGF1] Length = 593 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 180/613 (29%), Positives = 293/613 (47%), Gaps = 43/613 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y M D G+V+YVGKA L+ R+KSY H + ++ +I + + +T + Sbjct: 12 LPMNPGCYLMKDAKGQVIYVGKAKRLKNRVKSYFIGT-HNGKTARLVREIVDFEYIITSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E+EAL+LE N+IK+ P++NI+L DDK +PYI IT+ P L R G YFGP+ Sbjct: 71 ELEALVLEINLIKKYDPKYNIMLTDDKHYPYIKITN-EVHPRLVTTRKIKKDGGKYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + A +TI L + + LR C + CL + I +C PC +I+ E Y ++ Sbjct: 130 PNARAANETIRLLNKLYPLRKCHTIP----QKVCLYYHIHQCLAPCEFKITPEDYKPYIE 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 + +FL G ++K+ + M +A K ++E A +RD +A + N Sbjct: 186 QITRFLKGDYSDVKKDLVSRMEEAAEKLEFERAKEYRDLIANIEATVEKQKMTMNDFIDR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F Y L C+Q F G+ E T +L++ R + + P+ Sbjct: 246 DVFGYYTMNGLICVQVFFIRQGKVIEREVSIFD-GIEDTEEAVLTFIGRFYQGNNLKPKE 304 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS----T 358 I + + L ++ K PK G+K++++E A+ NA + ++KL Sbjct: 305 IFIPATLNQELLSQLLDIKVIV-------PKIGDKKELVELAMKNAEMALSEKLQLIEKQ 357 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E ++ + +P RIE +DNSH G AV MVV + K QYRK+ + Sbjct: 358 EERTLKAVERLGEVLNIPTP-HRIEAFDNSHHQGMDAVSAMVVFTDGRPDKKQYRKYKIQ 416 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 DD MR V+ RR+ +++ + PD++++DGGKGQ++ Sbjct: 417 TT--SDGDDYQAMREVIYRRYFKVLNED--------------LPAPDLIVIDGGKGQVAI 460 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 AQ VL LN+ I ++ + K K + E + L R + + R++DE H Sbjct: 461 AQEVLSSLNMT--IPVVGLVKDEKHRTSF-LLDGRDMEEIKLPTRSNVFQLLTRIQDEVH 517 Query: 539 RFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RF I H + +K+ S LDEI G+GP RKRLL+Q+FGT++ + + + + G Sbjct: 518 RFVIGFHHQSAQKRTLTSILDEIPGVGPKRKRLLIQNFGTLERMVEADEQDYLKL-GFPA 576 Query: 598 KIACKIYNHFHKN 610 ++ +I + Sbjct: 577 EVIRRIKTFIAEE 589 >gi|303238015|ref|ZP_07324558.1| excinuclease ABC, C subunit [Prevotella disiens FB035-09AN] gi|302481805|gb|EFL44857.1| excinuclease ABC, C subunit [Prevotella disiens FB035-09AN] Length = 622 Score = 446 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 167/627 (26%), Positives = 306/627 (48%), Gaps = 48/627 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PG YQ D ++YVGKA NL+ R+ SY H + ++S+I++I +TV Sbjct: 26 NLPEKPGTYQYYDKEHTIIYVGKAKNLKNRVASYFHKETDRFKTKVLVSKIHDITYTVVN 85 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E +ALL+E +IK+ +PR+N+LL+D K++P I +T+ P ++ R+ + G++FGP Sbjct: 86 SEEDALLIENQLIKQYQPRYNVLLKDGKTYPSICVTN-EYFPRIFNTRNINKRYGTFFGP 144 Query: 125 FASVDAVEKTINSLQRTFFLRSCADS-----VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + ++ + L++ + R+C + + + +PCL + I C PC G+ S E Sbjct: 145 YSHISSMYAILEILKKVYKPRTCRYPITEEGIKQGKYKPCLEYHIGNCGAPCIGKQSYED 204 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + + ++K+ L G ++ K+ M + + +E A ++ R AL++ ++ + Sbjct: 205 YRQNIEDSKQILKGNTREMERKMKAKMEECAAELRFEEAEKYKQRYLALANFAAKSEIVS 264 Query: 240 NRMDCFSLYH-----NKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + ++ N A I G + TF K E ++A++L+ + + Sbjct: 265 YTIADVDVFSIINDDNNKNAFINYIHVTNGAINQSFTFEYKRKLEESDAELLNEAILEIR 324 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 ++ + + +P++G+K+ ++E + +NA + Sbjct: 325 ERFKSTAKEIIVPFEMDFKI----------KDATFFIPQRGDKKHLLELSEMNAKQHKFD 374 Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 +L E ++K+ + LP +P IE +DNS+I G AV +V Sbjct: 375 RLKQAEKLNPEQKQTRLMKELQDRLKLPKLPYHIECFDNSNISGTDAVAGCIVYKGMKPS 434 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 K YRK+N+ V+ DD A M+ V+ RR+ ++I+ +L PD++I Sbjct: 435 KKDYRKYNIKT--VEGPDDYASMQEVVRRRYKRMIEEGTSL--------------PDLII 478 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 DGGKGQ+ + V++ + I I +AK R E + + + + + Sbjct: 479 TDGGKGQMEVVRAVVED-KLHITIPIAGLAK-DNRHRTNELLYGFPPQTIGVPTNSELFK 536 Query: 529 FIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 + +++DE HRFAI+ HR +R K+ +S LD I GIG K LL F TVK I + + Sbjct: 537 ILTQIQDEVHRFAISFHRDKRSKSQLHSELDSIKGIGTKTKEQLLTHFKTVKRIKEADLQ 596 Query: 588 TLASIEGISKKIACKIYNHFHKNTSHT 614 L +I G S+ A ++N+FH ++ Sbjct: 597 QLTNIIGGSR--ASLLFNYFHPTDPNS 621 >gi|227529065|ref|ZP_03959114.1| excinuclease ABC subunit C [Lactobacillus vaginalis ATCC 49540] gi|227351077|gb|EEJ41368.1| excinuclease ABC subunit C [Lactobacillus vaginalis ATCC 49540] Length = 603 Score = 446 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 175/615 (28%), Positives = 282/615 (45%), Gaps = 42/615 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M +I +++YVGKA NL+ R++SY ++HT ++ M+S++ + VT T Sbjct: 13 LPDKPGCYLMKNINDQIIYVGKAKNLKNRVRSYF-KSSHTGKVAKMVSEVADFETIVTST 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E+ LLE +I++ +P FNI L+ +PYI IT+ + P YFGP+ Sbjct: 72 NKESFLLEITLIQKHQPYFNIRLKRGTGYPYIKITN-ERDPRTMITGQVKKDGAYYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A E+T++ +Q+ + LR C RPCL + + +C G C + E+Y E + Sbjct: 131 PNVYAAEETLHFIQKVYPLRRCNGYQ----NRPCLYYHMGQCLGACFKTVPREEYDEQIK 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 K FL+G +K ++ + M +A ++E A RD+L + I N Sbjct: 187 RIKSFLNGNTATVKRRLTKQMEEAAANLEFERAAEIRDQLHYIKVTVEKQKIISNDKTPR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ Y +K IQ F + + P+ Sbjct: 247 DLFNFYMDKGWLSIQVFFIRQARLMKREKRLFPVVDTDVEEMTSFILQFYNRRNNVLPKE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358 ILL + EI V + P +G+KR ++ A NA Sbjct: 307 ILLPHGLPNKEISEIL-------GVPVRTPVRGKKRDLMAMARENAQLSLDEKFRLLELD 359 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 +K+ T LP +IE +D+SHI G V MVV + K YRK Sbjct: 360 TKKTTGAMKEITDALGLP-EGHKIEAFDHSHIQGADPVSAMVVFVDGEPAKKLYRK-YKL 417 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + + D+ A R V+ RR+S+L+K + PD++ +DGG+ Q++A Sbjct: 418 KSVINHADEAASTREVIRRRYSRLLKENK--------------PMPDMIFMDGGEIQMNA 463 Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 + VL+ +L ++ I ++ + K K + F E + LN R Y +QR++DE Sbjct: 464 VKDVLENELGLD--IPVVGMVKNDKHKTA-DLLFGDHDEHINLNPRSQGFYLVQRIQDEV 520 Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ + + S LD I G+GP + LLQ +G++ I+ + E + S+ GI+ Sbjct: 521 HRFAITFHRRVHARHSMASRLDAIKGVGPRTRTKLLQKYGSITKIAAAPIEDIHSL-GIN 579 Query: 597 KKIACKIYNHFHKNT 611 K A I N Sbjct: 580 MKTAQLIKVSLQGNA 594 >gi|229496340|ref|ZP_04390060.1| excinuclease ABC subunit C [Porphyromonas endodontalis ATCC 35406] gi|229316918|gb|EEN82831.1| excinuclease ABC subunit C [Porphyromonas endodontalis ATCC 35406] Length = 604 Score = 446 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 177/623 (28%), Positives = 286/623 (45%), Gaps = 49/623 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PG YQ + G ++YVGKA NL++R+ SY + + +++QI ++++ V Sbjct: 12 TLPLSPGCYQYYNAEGEIIYVGKAKNLRRRVSSYFQKEHTDRKTRQLVAQIVDVKYIVVA 71 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 E +ALLLE N+IK +P++NILL+DDKS+P I++T + P ++ R G Y+GP Sbjct: 72 NESDALLLENNLIKTYQPKYNILLKDDKSYPSIVVT-REPFPRIFVTRTIDPSWGDYYGP 130 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVF-----RHRTRPCLLFQIKRCSGPCTGEISSEK 179 + SV + ++ + +R+C R + CL + IKRC PC G +S E Sbjct: 131 YTSVAMAHGMVGIIREMYKVRTCRHRFTQEAIERGKYARCLQYHIKRCEAPCEGLVSRED 190 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y+ + A + L G + ++ M + + YE A + RLA L + Sbjct: 191 YLNNIAAAVELLKGNLRQVIQQTTSRMLALSEELRYEEAGQEKARLAMLQAYSTKHIVAP 250 Query: 240 ---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + +D FS +A + H G T K + I + + + Sbjct: 251 ETRHDIDVFSYEEEGPMAYVNMMQVHEGAIVRALTVEYKKAIDEEAEDIFATAITELRGR 310 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK- 355 ++ IT+PKQGEK+K++E ++ N R + Sbjct: 311 YESRAKEVILPYPLGWE---------SLGHFSITIPKQGEKKKLLELSIDNVKRYKLDQL 361 Query: 356 -----LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 L+ E Q ++ + LP P+ IE +DNS++ G + V VV K Sbjct: 362 KRAEKLNPEQRVQRLMNKMIEDLHLPVAPRYIECFDNSNLQGTAPVAACVVFRNGKPSKK 421 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 +YRKF++ V+ DD A MR ++ERR+ +L + E P ++++D Sbjct: 422 EYRKFHVKT--VEGADDLASMREIVERRYRRLQEEE--------------LPLPQLIVID 465 Query: 471 GGKGQLSAAQGVLKKLNVENR-ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 G +GQL A L + + TII +A+ + E +F + L L+ L Sbjct: 466 GARGQLEVAVETLSAMGIGAPTTTIIGLAERME-----EVYFPGEENPLFLSRDSETLRT 520 Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 + ++RDEAHRF IT HR R K +S LD+I+G+G K LL+ F +VK I + Sbjct: 521 LMQIRDEAHRFGITFHRSIRSKNQIHSALDDIDGVGKQTKEALLRHFRSVKRIEAAELPE 580 Query: 589 LASIEGISKKIACKIYNHFHKNT 611 L S+ I KK +Y H N Sbjct: 581 LESL--IGKKRGGIVYKALHSNE 601 >gi|282879093|ref|ZP_06287853.1| excinuclease ABC, C subunit [Prevotella buccalis ATCC 35310] gi|281298827|gb|EFA91236.1| excinuclease ABC, C subunit [Prevotella buccalis ATCC 35310] Length = 612 Score = 446 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 172/625 (27%), Positives = 303/625 (48%), Gaps = 48/625 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 MP PG YQ D +++YVGKA NL+ R+ SY ++ ++S++ +I +TV Sbjct: 19 NMPGKPGSYQFYDKDHQIIYVGKAKNLKNRVSSYFRKEVDRYKTKVLVSKVWDITYTVVN 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE ++IK+ PR+N+LL+D K++P I +T K +P ++K R G+Y+GP Sbjct: 79 TEEDALLLENSLIKKYNPRYNVLLKDGKTYPSICVT-KEYLPRIFKTRRIDRRFGTYYGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + + + +++ + R+C + + + + +PCL + I C PC G+ + E Sbjct: 138 YSQITIMYSLLELIKKLYKPRTCRFPITPEGISQGKYKPCLEYHIHNCKAPCVGKQTHEN 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y E + +A + L G + + + + M + + +E A + + L++ ++ + Sbjct: 198 YHENIAQACEILKGNTREVSKILYQQMLKKAEELKFEEAEELKQKYEMLNNFVAKSEVVS 257 Query: 240 NRMDCFSLY-----HNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 N + ++ K A I G + TF K + T+ ++L +++ Sbjct: 258 NTIQDLDVFTLTDDDQKKNAFINYIHVKNGTINQSFTFEYKRKLDETDEELLITAIQEIR 317 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 + ++ SL +P++G+K+ +++ + +N + Sbjct: 318 SRFKSKAKEIIVPFEINWSLN----------NATFFIPQRGDKKHLLDLSEMNGKQYKFD 367 Query: 355 K------LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 + L+ E ++K+ K LP +P IE +DNS+I G AV +V Sbjct: 368 RLKRSEKLNPEQKQTRLMKELQTKLKLPKLPYHIECFDNSNISGTDAVAGCIVFKGMKPS 427 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 K YRK+N+ V DD A M+ V+ RR+S++ + + PD++I Sbjct: 428 KKDYRKYNIKT--VSGPDDYASMQEVVRRRYSRMTEEQ--------------APLPDLII 471 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 DGGKGQ+ + VL+ + +I I +AK + E F + + L + + Sbjct: 472 TDGGKGQMEVVREVLED-ELHLQIPIAGLAKNDRHRT-NELLFGFPPQVVGLKADSELFH 529 Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 + ++DE HR+AIT HR +R K A +S LD+I GIGP K LL++ +VK I S E Sbjct: 530 LLTHIQDEVHRYAITFHRDKRSKNALHSELDDIKGIGPKTKEQLLKALKSVKRIKDSDLE 589 Query: 588 TLASIEGISKKIACKIYNHFHKNTS 612 TL I I + A I+NHFH N Sbjct: 590 TLTEI--IKEAKAKIIFNHFHPNNP 612 >gi|229823237|ref|ZP_04449306.1| hypothetical protein GCWU000282_00535 [Catonella morbi ATCC 51271] gi|229787403|gb|EEP23517.1| hypothetical protein GCWU000282_00535 [Catonella morbi ATCC 51271] Length = 604 Score = 445 bits (1144), Expect = e-122, Method: Composition-based stats. Identities = 162/617 (26%), Positives = 300/617 (48%), Gaps = 43/617 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+ PG Y M D A ++LYVGKA NL+ R++SY + T + T ++S+I++ Sbjct: 22 KLKLLPDLPGCYLMKDAADQILYVGKAKNLKNRVRSYFRGAHDT-KTTKLVSEIDHFEII 80 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 +T + EALLLE N+I++ KP FNI L++ +PY+ IT K + P L + + G Y Sbjct: 81 ITNSNKEALLLEINLIQQYKPPFNIRLKEGTMYPYLKIT-KERHPQLIITSNVTKDGGLY 139 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPF +V A +T L R + L ++ R C + + +C GPC E++ + Y Sbjct: 140 FGPFPNVGAATQTQQLLHRVYPL----RRCGKNEKRACFYYHLGQCIGPCDHEVTKDMYE 195 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 + + + K+F +G + ++ M A + D+E A +RD+L + + Sbjct: 196 QQIQKIKQFFNGDIQPIMTQLKDKMQAAAERLDFEQAADYRDQLQYIETTIERQIIMSQD 255 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 Y+ D F+ + IQ G ++ + Sbjct: 256 YDNTDVFAYDFQRGWISIQVFMLRQGSILKREAAIYPAYTDPDEELTTFIARFYQEENHL 315 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS- 357 P+ IL+ E+ ++ L ++ + I+ P++G+K+ +++ N+ + ++L+ Sbjct: 316 LPKAILVPEDVDKDLLSQVI-------SIPISTPQRGKKKSMLDLCAKNSQLALNERLNL 368 Query: 358 ---TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + + +D +P IE +D+S+I G V MVV E + YRK Sbjct: 369 LDIQAQQTRGVSEDLAAALGIPLAYH-IEAFDHSNISGTGLVSGMVVYKEGKPDRKSYRK 427 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + + ++ A + V+ RR+S+L++ E+ L P+++++DGGK Sbjct: 428 FKIKES--NQTNEFAHTQEVIRRRYSRLLREEQPL--------------PNLILMDGGKV 471 Query: 475 QLSAAQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 Q+ AA+ V++ +L + I + + K K E + L+ + P+ ++IQR+ Sbjct: 472 QVRAARQVIEKELGLS--IPVAGMVKDDKHRTAS-LMNGYSEELVELDRQSPVFHYIQRI 528 Query: 534 RDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 ++E HR+AI+ HR+ R K + S LD I G+G + + LL+ F ++K + +S E A + Sbjct: 529 QEEVHRYAISYHRQVRSKQQFASKLDAIPGVGKVTRTKLLKHFKSLKAMKEASIEDYAKL 588 Query: 593 EGISKKIACKIYNHFHK 609 G+ ++A +I + K Sbjct: 589 -GVRAELAERIIAYLSK 604 >gi|288800536|ref|ZP_06405994.1| excinuclease ABC subunit C [Prevotella sp. oral taxon 299 str. F0039] gi|288332749|gb|EFC71229.1| excinuclease ABC subunit C [Prevotella sp. oral taxon 299 str. F0039] Length = 616 Score = 445 bits (1144), Expect = e-122, Method: Composition-based stats. Identities = 176/625 (28%), Positives = 295/625 (47%), Gaps = 48/625 (7%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + MPE PG YQ D ++YVGKA L+ R+ SY H + ++S+I+NI +TV Sbjct: 18 QSMPEKPGSYQFYDENNVIIYVGKAKRLKSRVSSYFHKEVDRFKTKVLVSKIHNISYTVV 77 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE +ALLLE ++IK+ PR+N+LL+D K++P I +T P ++K R + G+YFG Sbjct: 78 NTEEDALLLENSLIKKYTPRYNVLLKDGKTYPSICVT-HEYFPRIFKTRTINHKTGTYFG 136 Query: 124 PFASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 PF +V A++ + + R+ L + ++ + CL + I C GPC G+ + E Sbjct: 137 PFTNVTALKSLLELITKIYKPRSCQLPLTPQGIANNKFKSCLEYHIHNCLGPCIGKQTME 196 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y E + +AK+ L G + M Q + +E A + + ++ ++ + Sbjct: 197 DYNEKIAQAKEILKGNVRKTSAVLYEKMMQLAEEMRFEEAQELKKQYELIASFVAKSEVV 256 Query: 239 YNRMDC-----FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 + + + + N+ A I G + T+ K TN ++L + + Sbjct: 257 SHTIRNVDVFSITYHDNEKTAFINYIHVKNGTINQSFTYEYKQKVNETNEELLVSAILEI 316 Query: 294 YTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 ++ + L TVP++G+K+K++E + +N + Sbjct: 317 RNRFASEAQEIIVPFEIDWQLT----------NAYFTVPQRGDKKKLLELSEMNGKQYKF 366 Query: 354 QKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 ++ E + I+K+ L +P IE +DNS+I G +AV VV Sbjct: 367 DRMKQAEKLNPEQKYTRIMKELQNHLQLSKLPYHIECFDNSNISGTNAVAGCVVFKGMKP 426 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 K+ YRK+N+ V DD A M+ V+ RR+ ++I + L PD++ Sbjct: 427 SKSDYRKYNIKT--VVGPDDYASMQEVVYRRYKRMIDEGKPL--------------PDLI 470 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPIL 527 I DGGKGQ+S + V+ + + +I I +AK E F + L + Sbjct: 471 ITDGGKGQMSVVREVI-EGQLHLQIPIAGLAKDNHHRT-NELLFGDPPIVIGLKNNSELF 528 Query: 528 YFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586 + R++DE HR+AI+ HR +R K A +S LD I G+G K L+ F +VK I +S Sbjct: 529 LALMRIQDEVHRYAISFHRDKRSKIALHSELDNIKGVGTKTKETLIAQFKSVKKIKTTSL 588 Query: 587 ETLASIEGISKKIACKIYNHFHKNT 611 E L + G SK A ++NHF++ Sbjct: 589 EQLTEVLGASK--AAIVFNHFNEKE 611 >gi|261409219|ref|YP_003245460.1| excinuclease ABC subunit C [Paenibacillus sp. Y412MC10] gi|261285682|gb|ACX67653.1| excinuclease ABC, C subunit [Paenibacillus sp. Y412MC10] Length = 667 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 158/655 (24%), Positives = 273/655 (41%), Gaps = 60/655 (9%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M + G ++YVGKA L+ R++SY + H + ++S+I + + VT + Sbjct: 25 LPDQPGCYLMKNHEGTIIYVGKAKVLKNRVRSYFTGS-HNGKTQMLVSEIRDFEYIVTGS 83 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK +PRFN+LL+DDK++PY+ IT++ P L R + YFGP+ Sbjct: 84 NMEALILECNLIKTHQPRFNVLLKDDKTYPYLKITNEE-HPRLEVTRRVLKDKAKYFGPY 142 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + A ++T L R + LR C CL + + +C PC E+ Y + Sbjct: 143 PNAYAAQQTKKLLDRMYPLRKCGVMPKE----VCLYYHMGQCLAPCVKEVPKSAYEQITG 198 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E FLSGG+ +K+++ R M +A +E A RD++ + + Sbjct: 199 EITSFLSGGHEEIKKELQRKMQEAAEDLYFERAKELRDQIIHIDTLMEKQKITTTDTRDR 258 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-CPE 301 D F +K C+Q + G+ F+ Q+Y+D P P+ Sbjct: 259 DVFGYAVDKGWMCVQILYMRQGKMVQRNKSVF--PFYGDAHSDFMSFIAQYYSDNPALPQ 316 Query: 302 NILLSEEAEETSLLEI--------------------------SFFKQYGYKVKITVPKQG 335 ILL ++ + +Q Sbjct: 317 EILLPGPLLAEEAGSETATGSAGEQGARNAGEAAETEKKLTTDISEEQHEVLVQAQAEQA 376 Query: 336 EKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSA 395 E +++ A A + + + + K + E + Sbjct: 377 EAAGLVDAAGGAAALQEWLGVKVHVPQRGLKKQMVGMASDNAKVSLDEKFRLIERDEERT 436 Query: 396 VGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVL--------ERRFS------- 440 +GE +++ R ++++ + + M + R++ Sbjct: 437 SVAAANLGEVIGLQSLNRIEAFDNSNIQGSNPVSAMVVFTNGKPDKKEYRKYKIRTVQGP 496 Query: 441 -QLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK-KLNVENRITIISIA 498 E + ++ PD++++DGGKGQ+SAA VL+ +L + + + + Sbjct: 497 DDYDTMREVIRRRYERVLKENLPLPDLIVVDGGKGQISAAIDVLENELGL--FVPVCGLV 554 Query: 499 KGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPL 557 K K E + L Y +QR++DE HRFAI+ HR++R K+ S L Sbjct: 555 KDAKHKTAQ-LMVGDPPEPVSLPRDSQEFYLLQRIQDEVHRFAISFHREQRGKSMVTSKL 613 Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 D I GIG R+++LL+ FG+VK I +S E + I +K+A I N + S Sbjct: 614 DSIPGIGEKRRKMLLKHFGSVKKIKEASVEDFKPL-SIGEKLATDILNALREEES 667 >gi|325268315|ref|ZP_08134948.1| excinuclease ABC subunit C [Prevotella multiformis DSM 16608] gi|324989457|gb|EGC21407.1| excinuclease ABC subunit C [Prevotella multiformis DSM 16608] Length = 625 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 160/622 (25%), Positives = 307/622 (49%), Gaps = 48/622 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 MPE PG YQ D+ ++YVGKA NL++R+ SY H + ++S+I++I ++V Sbjct: 35 NMPEKPGTYQFYDVEHTIIYVGKAKNLKRRVSSYFHKEVDRFKTKVLVSKIHDISYSVVN 94 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALL+E +IK+ KP++N+LL+D K++P I +T+ P ++K R+ + G+++GP Sbjct: 95 TEEDALLIENQLIKQYKPKYNVLLKDGKTYPSICVTN-EYFPRIFKTRNINKRYGTFYGP 153 Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + ++ ++ +++ + R+C + + + + +PCL + + C PC + S E Sbjct: 154 YSHISSMYAILDIIKKVYKPRTCRFPITKEGIEQGKYKPCLEYHLHNCGAPCIDKQSYED 213 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y E + +A++ L G ++ + + M + + +E A + + R AL + ++ + Sbjct: 214 YQEAIRQAREILKGNTREVQNMLKQQMEKYAEELRFEEAELCKQRYMALDNFAAKSEIVS 273 Query: 240 NRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + + ++ + A I G + T+ K + T+ ++L+ + + Sbjct: 274 HTITDVDVFTIIDDDTRKNAFINYIHVKNGAINQSFTYEYKRKLDETDEELLNEAIPEIR 333 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 ++ + +P++G+K ++E + +NA + Sbjct: 334 ERFNSTAKEIIVP----------FALDFKVKDAEFFIPQRGDKHHLLELSEMNAKQYKFD 383 Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 +L E ++++ +K LP +P +IE +DNS+I G AV +V Sbjct: 384 RLKQAEKRNPEQKQTRLMRELQEKLKLPKLPYQIECFDNSNISGTDAVAGCIVYKGMKPS 443 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 + YRK+N+ V DD A M+ V+ RR+S++ + PD++I Sbjct: 444 RKDYRKYNIKT--VTGPDDYASMQEVVRRRYSRMQEEG--------------TPLPDLII 487 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 DGGKGQ+ + V++ + + I +AK + E + + + L+++ + Sbjct: 488 TDGGKGQMEVVRAVIED-ELHLHVPIAGLAKDDRHRT-NELLYGFPPQTIGLDIKGELFK 545 Query: 529 FIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 + +++DE HRFAI+ HR +R K+ +S LD I GIGP K LLL+ +VK I + + Sbjct: 546 VLTQIQDEVHRFAISFHRDKRSKSQLHSELDNIKGIGPKTKNLLLKKMKSVKRIKDADSQ 605 Query: 588 TLASIEGISKKIACKIYNHFHK 609 L I G SK +YN+FH Sbjct: 606 ELIDIVGTSKG--NIVYNYFHN 625 >gi|312128881|ref|YP_003996221.1| excinuclease abc, c subunit [Leadbetterella byssophila DSM 17132] gi|311905427|gb|ADQ15868.1| excinuclease ABC, C subunit [Leadbetterella byssophila DSM 17132] Length = 602 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 172/614 (28%), Positives = 275/614 (44%), Gaps = 38/614 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PG+Y+ + G ++YVGKA NL+ RI SY H+ + + ++ I+++ +T+ Sbjct: 12 HLPTEPGIYKYFNADGEIIYVGKAKNLKNRISSYFHNYDRADRKTRKLVESIHHLEYTIV 71 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI-QGSYF 122 TE +ALLLE N+IK +P++NILLRDDK++PYI +T + P + R +G + Sbjct: 72 PTEWDALLLENNLIKEHQPKYNILLRDDKTYPYICVT-HERFPRVIFTRRIEDRSRGRMY 130 Query: 123 GPFASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 GP+ S + ++ + + +R+C ++V + + CL + I C GPC G S Sbjct: 131 GPYVSAKPMYALLDMFSQLYTIRTCKYQLSKENVEAGKFKVCLEYHIGNCKGPCEGLQSE 190 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E+YM + + L G K M A + +E A + +L L + Q Sbjct: 191 EEYMHEIEQVHDILKGNLGPAKSYFQERMEAAAGRLAFEEAHKLKSKLEFLENYQAKATV 250 Query: 238 ---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 D F++ ++ A + G T T +K T+ +ILS + + Sbjct: 251 VTPTIKDADVFTIQSDETAAYVNYLKIMNGSIISTQTMEVKKRLNETDEEILSIIMLELR 310 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 T ++S + + R ++ A + Sbjct: 311 TKYESTAREIISNLDPDIDFKA---TITVPQTGDKKKLVEMSLRNVVFYRHEKAEKEAIT 367 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 K +L + LP +P+ IE +DNS+I G + V MV YR Sbjct: 368 KSGNANKRDRVLIKMKQDLHLPSLPRHIECFDNSNIQGTNPVSAMVCFINGQPSPKNYRH 427 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + P V+ DD A MR V+ RR+++L++ S PD++I+DGGKG Sbjct: 428 YI--PRTVEGPDDFATMREVVGRRYTRLVE--------------SGSPLPDLIIVDGGKG 471 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 QLSAA LK + + ++ II IAK + E +F + + ++ + L IQR R Sbjct: 472 QLSAACEALKSIGIYGKVPIIGIAKRLE-----EIYFPEDSLPIYIDKKSETLQLIQRCR 526 Query: 535 DEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DEAHRF IT HR RR K S L+ GIG +L F T+ I +S E L + Sbjct: 527 DEAHRFGITHHRNRRSKNFLISSLESAPGIGKTTATKVLSHFKTIGNIKAASEEELIQVL 586 Query: 594 GISKKIACKIYNHF 607 G K A ++ Sbjct: 587 G--KDKARRVREFL 598 >gi|282880579|ref|ZP_06289286.1| excinuclease ABC, C subunit [Prevotella timonensis CRIS 5C-B1] gi|281305682|gb|EFA97735.1| excinuclease ABC, C subunit [Prevotella timonensis CRIS 5C-B1] Length = 613 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 172/626 (27%), Positives = 310/626 (49%), Gaps = 50/626 (7%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +PE PG YQ D G ++YVGKA NL++R+ SY + ++S+I+NI +TV Sbjct: 18 DSIPERPGSYQFFDKEGNIIYVGKAKNLKRRVSSYFLKEVDRFKTKVLVSKIHNITYTVV 77 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE +ALLLE ++IK+ P++NILL+D K++P I IT+ +P + K R GSYFG Sbjct: 78 NTEEDALLLENSLIKKYNPKYNILLKDGKTYPSICITN-EWLPRIIKTRQIRKGNGSYFG 136 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSV-----FRHRTRPCLLFQIKRCSGPCTGEISSE 178 P+ + + ++ + + + R+C + + R CL + I C PC + S E Sbjct: 137 PYTQISHLYAVLDVINKIYKPRTCTFPITPAGVKEGKYRACLKYHIGNCLAPCIAKQSHE 196 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 YM+ + +A++ L G +++ + + M + + + +E A I +D+ L+ + ++ + Sbjct: 197 DYMQNIEQAREILKGNTREVRDILYQMMLKKSEELKFEEAQILKDKYDILNTFVSKSEVV 256 Query: 239 YNRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 + ++ A + G + T K+ E T +IL +++ Sbjct: 257 SYTIKDVDVFTLTEDEGKKTAYVNYMHVKNGTINQSFTIEYKSKIEETKEEILITAIQEL 316 Query: 294 YTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 + E++ L+ + + TVP++G+K+ +++ + +NA + Sbjct: 317 RSR----------FESKAKELIVPFDINWHLHDCIFTVPQRGDKKHLLDLSEMNAKQYKF 366 Query: 354 QKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 +L E ++K+ + LP +P IE +DNS+I G +AV VV Sbjct: 367 DRLKQAEKLNPEQRQTRLMKELETQLNLPTLPFHIECFDNSNISGTNAVAGCVVFKGLKP 426 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 K YRK+N+ V+ DD A M+ V+ RR+ ++I+ + P+++ Sbjct: 427 SKQDYRKYNIKT--VEGPDDYASMKEVVRRRYQRMIEEQ--------------TPLPNLI 470 Query: 468 ILDGGKGQLSAAQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526 I DGGKGQ+ + V++ +L + I I +AK R E + + + + + Sbjct: 471 ITDGGKGQMEVVRQVVEDELGLH--IPIAGLAK-DNRHRTNELLYGFPPQVIGMKADSEL 527 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 + + R++DE HR+AIT HR +R K A +S LD I GIG ++ L+++ +VK I + Sbjct: 528 FHILTRIQDEVHRYAITFHRDKRSKQALHSELDNIKGIGIQTQKQLMKALKSVKKIKEAD 587 Query: 586 PETLASIEGISKKIACKIYNHFHKNT 611 +TL +I I K A I+ +FH+ Sbjct: 588 LQTLTNI--IGKSKANIIFQYFHEKE 611 >gi|288801785|ref|ZP_06407227.1| excinuclease ABC subunit C [Prevotella melaninogenica D18] gi|288335827|gb|EFC74260.1| excinuclease ABC subunit C [Prevotella melaninogenica D18] Length = 611 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 163/625 (26%), Positives = 308/625 (49%), Gaps = 50/625 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 MPE PG YQ D ++YVGKA NL++R+ SY H + ++S+I +I ++V Sbjct: 19 NMPEKPGTYQFYDNEKTIIYVGKAKNLKRRVSSYFHKEVDRFKTKVLVSKIYDISYSVVK 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALL+E +IK+ KP++N+LL+D K++P I +T+ P ++K R + G+++GP Sbjct: 79 TEEDALLIENQLIKQYKPKYNVLLKDGKTYPSICVTN-EYFPRIFKTRTINKRYGAFYGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + ++ ++ +++ + R+C + + + + +PCL + + C PC + S E Sbjct: 138 YSHIGSMYAILDIIKKVYKPRTCRFPITKEGIEQGKYKPCLEYHLHNCGAPCINKQSYED 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y E + +A++ L G ++++ + + M + + +E A + + R AL + ++ + Sbjct: 198 YQEAIKQAREILKGNTRDVQKLLKQEMEKYAEELRFEEAELCKQRYLALDNFAAKSEIVS 257 Query: 240 NRMDCFSLY-----HNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + + ++ + A I G + T+ K + ++ ++L+ + + Sbjct: 258 HTITDVDVFTIVSDDTRKNAFINYIHVTNGAINQSFTYEYKRKLDESDQELLNEAIPEIR 317 Query: 295 TD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 + I++ E + + +P++G+K ++E + +NA + Sbjct: 318 ERFNSTAKEIIVPFELDFK-----------VKGAEFFIPQRGDKHHLLELSEMNAKQYKF 366 Query: 354 QKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 +L E ++++ K L +P IE +DNS+I G AV +V Sbjct: 367 DRLKQTEKLNPEQKQTRLMRELQDKLKLSKLPYHIECFDNSNISGSDAVAGCIVYKGMKP 426 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 K YRK+N+ V DD A M+ V+ RR+S++ + PD++ Sbjct: 427 SKKDYRKYNIKT--VVGPDDYASMQEVVRRRYSRMQEEG--------------TPLPDLI 470 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPIL 527 I DGGKGQ+ + V++ + I I +AK + E F + + L+++ + Sbjct: 471 ITDGGKGQMEVVREVVEDE-LHLSIPIAGLAKDDRHRT-NELLFGFPQQTIALDIKGELF 528 Query: 528 YFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586 + +++DE HR+AI+ HR +R K +S LD+I GIGP K LL+ TVK I + Sbjct: 529 KVLTQIQDEVHRYAISFHRDKRSKTQLHSELDDIKGIGPKTKDALLKKLKTVKHIKEADL 588 Query: 587 ETLASIEGISKKIACKIYNHFHKNT 611 + L + G SK A +YN+FH N Sbjct: 589 QELTEVIGASK--ATIVYNYFHANQ 611 >gi|183221458|ref|YP_001839454.1| excinuclease ABC subunit C [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911545|ref|YP_001963100.1| excinuclease ABC subunit C [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|229558447|sp|B0SB16|UVRC_LEPBA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|229558448|sp|B0SST8|UVRC_LEPBP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|167776221|gb|ABZ94522.1| Excinuclease ABC, subunit C [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779880|gb|ABZ98178.1| UvrABC system protein C (UvrC protein; Excinuclease ABC subunit C) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 614 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 171/617 (27%), Positives = 295/617 (47%), Gaps = 31/617 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + + PG Y + G+V+YVGKA LQ R++SY++ N + + ++ ++ + Sbjct: 13 KIKNLGSLPGCYLWKNELGQVIYVGKALKLQSRVRSYLNPNQKDRKTRALFVELYDLDWI 72 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T TE EALLLEA +IK+ P+FN+ L+DDK +P++ ++ P ++ R Y Sbjct: 73 ATGTEKEALLLEATLIKKYNPKFNVRLKDDKKYPFLCVSTSEDYPMVFLTRKVKDNGDRY 132 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCA-DSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 FGPF V A T+ + R F +R RPCL F + RC GPC G ++ + Y Sbjct: 133 FGPFTDVKAARDTLELIHRIFPIRKTKLKLPLPKPQRPCLNFHMGRCLGPCQGNVTKDTY 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 E V E +FL G L + + M A+ K +YE A + R+ ++ ++ + Sbjct: 193 SELVDEILRFLEGKKERLVADLKKAMMDASSKMEYERAGFLKQRIEKINQLREKQTVVSM 252 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D + ++ I G+ G +F L S S + + + FLR +Y + Sbjct: 253 DGGDEDILGISKREDEGQILILEVRGGRLEGKKSFPLTGLSFSDDEEAFTSFLRDYYLNV 312 Query: 298 PCPENILLSEEAE--ETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 +++ + + + +++G +K+ P+ G K+ ++ A NA S T++ Sbjct: 313 TVLPSVVYLPTSAKGNYDVFLEAILEKFGTSIKLKFPEMGPKKSLLRLAEKNADLSLTER 372 Query: 356 L--STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + + +K+ +K LP +P+ IE YD SH G V V+ E K YR Sbjct: 373 ILATKLRDQTVAMKELQEKLNLPTLPRTIECYDISHFQGSLPVASGVMFVEGKPYKPGYR 432 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 + + + +D M+ V+ RR S L+ EE L PD++++DGG Sbjct: 433 HYKMRG--YEGINDPGMIHEVIARRLSHLVNEEEPL--------------PDLIVIDGGL 476 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 QLS A L++ I ++ +AK + E +F + + P++ ++ L Sbjct: 477 TQLSRAAEAANALDL-GHIPMVGLAKKRE-----EIYFPGEKHPYSFDQHSPMMRLLRNL 530 Query: 534 RDEAHRFAITTHR-KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDEAHRF +T R +R+KKA S LD+I IG R++ +L F K ++ ++ + L + Sbjct: 531 RDEAHRFGVTFQRLQRKKKALKSILDDIPDIGASRRKSILMYFQAKKKVTDATRQELEKV 590 Query: 593 EGISKKIACKIYNHFHK 609 +GI +A KI+ + Sbjct: 591 QGIGPVLAEKIFTNIQN 607 >gi|303325404|ref|ZP_07355847.1| excinuclease ABC subunit C [Desulfovibrio sp. 3_1_syn3] gi|302863320|gb|EFL86251.1| excinuclease ABC subunit C [Desulfovibrio sp. 3_1_syn3] Length = 661 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 180/666 (27%), Positives = 271/666 (40%), Gaps = 80/666 (12%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 +P PGVY D GR++YVGKA L++R+ SY + M++ ++ + Sbjct: 5 DPSTIPLTPGVYLYKDSRGRIIYVGKARILRRRVLSYFRPEGLPAKTRAMLAHAVSLEYL 64 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T TE EALLLEA++IK+ +P +NI+LRDDK + + KH P L R + Y Sbjct: 65 TTTTEKEALLLEASLIKKHRPHYNIVLRDDKQYVLFRLNLKHPFPRLEVVRRARRDGARY 124 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPF S + +T + R F LR C+D ++R RPCL + +C PC I+ E Y Sbjct: 125 FGPFTSALSARETWKLIHRAFPLRRCSDRAMKNRVRPCLYHHMGQCPAPCMDLITPEAYH 184 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + VH+ + L G L + M QA ++E A RD++ A+ ++ Sbjct: 185 QAVHKVCELLQGRAEPLLRGLRAEMEQAAENLEFEKAATLRDQIRAVERTVERQAAVLPG 244 Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 MD L+ + F G F+ + ++LS F+ Q+Y+ Sbjct: 245 GGDMDAVGLFPADKGLALGIAFVRSGAVTDGRAFYWPGLTFEDAPELLSSFVSQYYSQVT 304 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEK--------------------- 337 P ILL E + Sbjct: 305 PPPRILLPWLPPELEWEADEREGGSASSDAESAESGASSAVSEPDATAPGGDSAQGAPSG 364 Query: 338 RKIIEQAL-------------INAHRSHTQKLSTE-----------ISHQMILKDFTKKF 373 + ++EQAL NA + L+ Q IL+ K Sbjct: 365 KALLEQALADRRGGPVRIVAPQNASDNQLIDLAQSNAREEARRRRNQDGQSILERLAKAL 424 Query: 374 ALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRM 433 L P+RIE D SH G +VV + + YR + + + DD A + Sbjct: 425 HLAGPPQRIECVDVSHTGGRQTRVGLVVFTDGQPSRPDYRTYAMPD----SGDDYATLHA 480 Query: 434 VLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRIT 493 + RR S P WPD++++DGG+GQL+ + L + Sbjct: 481 WVARRL------------------ESGPPWPDLLLIDGGRGQLAVVERALADAGQIGLFS 522 Query: 494 IISIAK------GPKRSAGM---EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544 + +IAK R AG F + L L P L F+Q +RD HRFAI Sbjct: 523 LAAIAKARDERGQADRRAGNVADRIFVPGRANPLPLREGGPELLFLQNVRDATHRFAIGR 582 Query: 545 HRKRRKKAAYS-PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 HR+ R+ AA S L + GIGP RLL ++FG+V+ + +S E L ++ GI A + Sbjct: 583 HRRARQGAALSGELMRLPGIGPATARLLWETFGSVEAMRAASLEELRALPGIGPAKAALL 642 Query: 604 YNHFHK 609 Sbjct: 643 QEKLKN 648 >gi|283769495|ref|ZP_06342391.1| excinuclease ABC, C subunit [Bulleidia extructa W1219] gi|283103763|gb|EFC05149.1| excinuclease ABC, C subunit [Bulleidia extructa W1219] Length = 591 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 184/623 (29%), Positives = 288/623 (46%), Gaps = 47/623 (7%) Query: 1 MSSE--QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNI 58 + ++ ++P PG YQM + G ++YVGKA +L R+ Y H + T ++S I++ Sbjct: 6 IEAKLAELPHEPGSYQMKNKYGEIIYVGKAKDLHNRVNQYFVGT-HDFKTTKLVSNIDDF 64 Query: 59 RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI- 117 F VT +E EAL+LE N+IK+ +P++NI DD S+PYI +T K K P L RD+ Sbjct: 65 DFIVTASEKEALILEINLIKKYRPKYNIQFIDDSSYPYIKLT-KEKYPRLLIARDTKKDK 123 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 + YFGPF V A + T LQ + R C + CL + + +C GPC EI+ Sbjct: 124 KARYFGPFPDVTAAKNTCKILQSLYPFRRCTTMP----KKLCLYYHLGQCLGPCEFEINP 179 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH--IQNHN 235 + Y + ++FL G + ++E + M A YE A ++ L ++ N Sbjct: 180 KVYDDMCEGVQRFLKGDSKEVEENLYTKMMVAAENRLYEQAQEYKVMLESIHAIVRHQQN 239 Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 NR D + + + I F Q F + FL Q+Y Sbjct: 240 IEKDNRGDRDAFAYVVDRGYIAIAGFLVRQGIILNKEFRLRPLYGDAQEAFESFLIQYYQ 299 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR----S 351 D P ++LS+E + +L E+ I P++G K ++I+ L NA + Sbjct: 300 DHPAARELVLSKEMDIQALKEVLDI-------PIFQPQRGYKVRLIDMCLHNAQQQLDLK 352 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 E Q +KD +K IE++DNSH G V VV + + Sbjct: 353 FKSVNRQESMRQEAVKDLSKLAGKDMNR--IELFDNSHTSGSFTVASCVVYEDGQEDRKS 410 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YRKF LH D M+ VL RR+ +L+K +PD +++DG Sbjct: 411 YRKFKLHTQ----NSDVDSMKEVLYRRYFRLLKEG--------------SRFPDGILVDG 452 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 G Q+ AA+ +L +L + +RI ++ + K + +G L ++ + + + Sbjct: 453 GWLQIEAAKEILGQLGLLDRIVVMGLVKDAHHNTRA--LMDGEGRELEVSKDSALFFLLT 510 Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 R++DE HR AI+ HR+ R KA S LDEI GIG RK+LL ++FG + +S E +A Sbjct: 511 RMQDEVHRVAISYHRQLRSKAQTKSVLDEIAGIGLKRKKLLWKAFGNFSHLKNASEEEIA 570 Query: 591 SIEGISKKIACKIYNHFHKNTSH 613 I I + A +Y HK Sbjct: 571 RI--IPAEPAHLLYKSLHKKEDE 591 >gi|325679748|ref|ZP_08159322.1| excinuclease ABC, C subunit [Ruminococcus albus 8] gi|324108563|gb|EGC02805.1| excinuclease ABC, C subunit [Ruminococcus albus 8] Length = 614 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 174/611 (28%), Positives = 296/611 (48%), Gaps = 26/611 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 + ++ PGVY M D +G+++Y+GKA NL R+ SY +H ++ M+S +N+ F Sbjct: 17 KTSKLTTSPGVYIMKDKSGKIIYIGKAKNLHNRVTSYFRRGQDHLPKVWKMVSNVNDYEF 76 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E EAL+LE ++IK P++NILL+DDK + YI +T P + S Sbjct: 77 IVTDSEFEALVLECSLIKLHTPKYNILLKDDKGYSYIRVT-DEPYPRIQAVLQKSDDSAE 135 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSE 178 Y GP+ S AV++ + + F L +C R + RPCL F IKRC G CTG S E Sbjct: 136 YIGPYTSSFAVKQAVEEANKVFRLPTCTRVFPRDIKKQRPCLNFHIKRCMGVCTGNFSEE 195 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 +Y V +A +++ G+ EK+ M +A ++E A RDR+AA+ Sbjct: 196 EYRAAVKQAIEYIKNGSEMSVEKLTAEMERAAEDLEFELAARLRDRIAAIQKAAESQKII 255 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D ++ N ++AC + G+ +FL D + + L + Sbjct: 256 DRTIPDCDIIAISQNVDIACASVIMYRGGRLTDKADYFL-GDRAEPAQMMEEFVLSYYAM 314 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P+ ILL EE + +L+ ++Y + V + VPK+G ++ A NA+ + + Sbjct: 315 KDDAPKTILLEEEPSDIEMLQQYLREKYDHAVYVNVPKKGHLVQLTTLAKNNANEFISVR 374 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 + L++ + + P+ IE YD S++ + V MVV K +Y+KF Sbjct: 375 VGRTRREVAGLEELARALGMEKPPRFIECYDISNLASTNMVAGMVVFENGRPCKKRYKKF 434 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 ++ V Q+D A M V+ERRF + K E+ F PD+++LDGG G Sbjct: 435 SIKT--VLEQNDYACMTEVIERRFGEYFKGEDE----------GFAQLPDLILLDGGNGH 482 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 ++ + VL++L V + + + K + L + +++D Sbjct: 483 VNTIKPVLERLKVS--VPLYGLVKDDHHRTRA---IATGDGEISLLKSRAAFNLVTQIQD 537 Query: 536 EAHRFAITTHRKRRKKAAYS-PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E HR AIT + +RK++ +S L ++ G+G + + L+ +F T + + ++S E L ++ G Sbjct: 538 EVHRVAITYQKAKRKRSTFSLELTKVRGVGEKKAQKLITAFKTKEALKKASVEELRAVAG 597 Query: 595 ISKKIACKIYN 605 IS+ A ++ N Sbjct: 598 ISEDTAKELKN 608 >gi|317057110|ref|YP_004105577.1| excinuclease ABC subunit C [Ruminococcus albus 7] gi|315449379|gb|ADU22943.1| excinuclease ABC, C subunit [Ruminococcus albus 7] Length = 614 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 169/611 (27%), Positives = 293/611 (47%), Gaps = 26/611 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 + ++ PGVY M D +G+++Y+GKA NL R+ SY +H ++ M+S +N+ F Sbjct: 17 KTSKLTTSPGVYIMKDKSGKIIYIGKAKNLHNRVNSYFRKGQDHLPKVWKMVSNVNDYEF 76 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E EAL+LE ++IK P++NILL+DDK + YI +T P + S Sbjct: 77 IVTDSEFEALVLECSLIKMHTPKYNILLKDDKGYSYIRVT-DEPYPRIQAVLQKSDDSAE 135 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSE 178 Y GP+ S V++ + R F L +C R + RPCL + IKRC G CTGE S E Sbjct: 136 YIGPYTSSFTVKQAVEEANRVFRLPTCTKIFPRDIKKQRPCLNYHIKRCMGVCTGEFSEE 195 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 +Y V +A ++ G+ + E++ M +A ++E A RDR+ A+ Sbjct: 196 EYRSIVSQAVDYIKNGSSSSVERLTEEMERAAENLEFELAARLRDRITAIQKAAESQKVI 255 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D ++ + ++AC + G+ +FL D A + + L + Sbjct: 256 DETIPDCDIIAISQSADIACASVIMYRGGRLTDKADYFL-GDRSEPAAMMEEFVLSFYAM 314 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P+ I+L E+ + +LE ++Y + V ++VPK+G ++ A NA+ + + Sbjct: 315 KDDAPKTIILEEDPTDILMLEQYLREKYDHAVHVSVPKRGHLLRLSTMAKNNANAFISVR 374 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 + L + + + P+ IE YD S++ V MVV + YRKF Sbjct: 375 VGRTGREVAGLDELARALGMEKPPRFIECYDISNLASTDMVAGMVVFENGRPCRKNYRKF 434 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 ++ V Q+D A M V+ERRF++ K ++ F PD+++LDGG G Sbjct: 435 SIKT--VFEQNDYACMTEVIERRFAEYKKGTDD----------GFAQLPDLILLDGGNGH 482 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 ++ + VL++L + + + + K + + L + +++D Sbjct: 483 VNTIRPVLERLGIS--VPLYGLVKDDRHRTRA---IATGSGEISLLKSRAAFALVTQIQD 537 Query: 536 EAHRFAITTHRKRRKKAAYS-PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E HR AI+ R +R+K A+S L + G+G + + L++ F T + + ++S E L ++ G Sbjct: 538 EVHRVAISYQRSKRRKTAFSLELTSVRGVGEKKAQKLMREFKTKEALKKASAEELRAVAG 597 Query: 595 ISKKIACKIYN 605 IS A ++ Sbjct: 598 ISADTAAELKK 608 >gi|218295697|ref|ZP_03496493.1| excinuclease ABC, C subunit [Thermus aquaticus Y51MC23] gi|218243856|gb|EED10383.1| excinuclease ABC, C subunit [Thermus aquaticus Y51MC23] Length = 595 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 178/615 (28%), Positives = 281/615 (45%), Gaps = 38/615 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PGVY VLYVGKA +L+ R+KSY H+ RI + + F T Sbjct: 12 LPEAPGVYLWK-RGEEVLYVGKAKSLRARVKSYFHAEGKARRIAE---EATALDFIATRD 67 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 EVEALLLEAN+IK +P +N+LL+DDK +P++ +T+ P L R Y+GPF Sbjct: 68 EVEALLLEANLIKAHRPPYNVLLKDDKHYPFLKLTN-EPFPTLLVVRRVEEDGAKYYGPF 126 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 A+ + + R F LR + + R PCL + RC PC G + Y E V Sbjct: 127 PEAGALRRIKALVDRLFPLRKNSGYPMKRRRYPCLNHSMGRCLAPCVGLADPKAYGEVVR 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA----ALSHIQNHNDSIYNR 241 + + L G L ++ M +A + ++E A RD++ S Q D Sbjct: 187 QVEAVLEGRVDGLLSELEAKMREAARRLEFERAAEIRDQIEALKAFFSTAQQAFDPEMGD 246 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 +D + L+ +Q G+ G + ++ + + + ++ + P P Sbjct: 247 LDFLGMARAGALSVVQLYQVRSGRILGRISRVVEKEEATDEEILWAFLRDHYLEASPLPP 306 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS--TE 359 +LL E+ L ++ G +V++ VPK+GEK++++E A NA + +L Sbjct: 307 LVLLPFPLEDLESLAELLRRRAGRRVELRVPKRGEKQRLLELAEKNARLALESELKLLER 366 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + LK AL P RIE YD SH+ G + V M V+ K +YR+ L Sbjct: 367 RGNHPGLKALQDLLALSRRPFRIEGYDVSHLQGEARVFSMAVMEGGRPKKAEYRRMRLR- 425 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 DD A M + RRF+ +K PD++++DGG GQ+ AA Sbjct: 426 ---AGNDDYAAMEEGVFRRFTGSLKE---------------MPLPDLLLIDGGLGQVRAA 467 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 L++ + + ++ +AK E +G + L + P L + LRDEAH Sbjct: 468 MRALERAGLS--LPLVGLAKKE------EVLITPEGREIRLPLTHPALRLLIHLRDEAHA 519 Query: 540 FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 + H+KRR + A L+ I GIG R++LLL+ +G +K + + E LA + G+S K Sbjct: 520 NGLRYHQKRRAQEALKVLEGIPGIGEARRKLLLERYGGLKALKEAPLEELARLPGMSLKA 579 Query: 600 ACKIYNHFHKNTSHT 614 A + + Sbjct: 580 AQALKEALREGAPEP 594 >gi|332827803|gb|EGK00538.1| excinuclease ABC, C subunit [Dysgonomonas gadei ATCC BAA-286] Length = 599 Score = 442 bits (1136), Expect = e-121, Method: Composition-based stats. Identities = 185/624 (29%), Positives = 308/624 (49%), Gaps = 49/624 (7%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +P+ PG YQ D G ++YVGKA NL+KR+ Y N+ + + ++S+I +I++ + Sbjct: 10 QNIPDKPGCYQYFDDKGIIIYVGKAKNLKKRVSQYFTKNHDSPKTRILVSKIRDIKYIIV 69 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE + LLLE N+IK +PR+N++L+DDKS+P I+I + P + R S YFG Sbjct: 70 DTEEDTLLLENNLIKEFQPRYNVMLKDDKSYPSIVIRN-EYYPRVELTRKISKDGSQYFG 128 Query: 124 PFASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 P+ +V +V+ + + + + +R+C + + + + CL + IKRC GPC G +SE Sbjct: 129 PYTNVLSVKTLLEFVHKLYPIRTCSLNLTPEKIAEGKYKVCLEYHIKRCLGPCVGLQTSE 188 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y++ V K+ L G + + ++I M + +++E A +++ + + +N + + Sbjct: 189 NYIKNVESIKEILKGNTNLVSDEIYAKMLELAENQEFEEANKLKEKYLLVENFKNKSTVV 248 Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 N +D +S +++ A I H G TF + E ++L + + Sbjct: 249 SNINYNIDVYSYDEDESSAYINYLNVHNGAIIQAYTFEYRKRLEEEKEELLGLGIIEVRE 308 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ + +L V+ +P++G+K+K++ + N + K Sbjct: 309 RFGSKAKEIVVPFYPDLTLE----------GVEFMIPQRGDKKKLLLLSTQNVRQYKIDK 358 Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 L E ILK+ K L +P IE +DNS+I G + V VV K Sbjct: 359 LKKAESLNPEQRSVRILKEIQKDLNLKELPTHIECFDNSNIQGTNPVSACVVFKMGKPSK 418 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 YR FN+ V+ DD + MR V+ RR+ +L++ E P ++++ Sbjct: 419 RDYRHFNVKT--VEGPDDFSTMREVVYRRYRRLLEEE--------------APLPQLIVI 462 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQLSAA LK L++ ++ I+ IAK + E ++ + L L+ L Sbjct: 463 DGGKGQLSAACESLKALDIYGKVAIVGIAKRLE-----EIYYPEDSIPLYLDKNSESLKV 517 Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 +Q LRDEAHRF IT HR +R K+ S LD I GIG KRLLL+ F +VK I + Sbjct: 518 LQHLRDEAHRFGITFHRNQRSKSQVKSELDNIKGIGDETKRLLLREFRSVKRIKLAEDRE 577 Query: 589 LASIEGISKKIACKIYNHFHKNTS 612 L I I K I +F + + Sbjct: 578 LEKI--IGKFKTALIRKYFEEKNN 599 >gi|269119767|ref|YP_003307944.1| excinuclease ABC, C subunit [Sebaldella termitidis ATCC 33386] gi|268613645|gb|ACZ08013.1| excinuclease ABC, C subunit [Sebaldella termitidis ATCC 33386] Length = 594 Score = 441 bits (1135), Expect = e-121, Method: Composition-based stats. Identities = 178/615 (28%), Positives = 301/615 (48%), Gaps = 39/615 (6%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIR 59 + ++P PG Y M + GRV+YVGKA NL+ R+ SY + ++HT + ++ I +I Sbjct: 8 VKLNEIPLNPGTYIMKNEKGRVIYVGKAKNLRNRVSSYFKNISSHTVKTLELVKNIRSIE 67 Query: 60 FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST--- 116 F + EVEAL+LE N+IK+ KP++NI+L+D+K++PYI I+ K P + R + Sbjct: 68 FFICQNEVEALILENNLIKKHKPKYNIMLKDEKTYPYIKIS-KEAFPKIEIVRSTKKLDS 126 Query: 117 IQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176 + YFGP+ + + SL + F +R C ++ + RPCL + + C+GPC + S Sbjct: 127 KEAEYFGPYPMG--IYFAVKSLLKIFPIRDCNRNMEKQYDRPCLKYYMNLCTGPCVYKDS 184 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 +Y E V+ + FL G + + + M + + ++E AI R+++ +L + + Sbjct: 185 VTEYNENVNNFRNFLKGHQNKILGSLEARMKEFSENMEFERAIREREKIVSLKKLLQNQV 244 Query: 237 SIYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 Y+ D F + + I G+ ++ ++ + + + Sbjct: 245 IEYSKEIDEDVFVIDQIGEKSFICVLDIREGKIINKNHIYVSLENVQED-DLFHRIFTAY 303 Query: 294 YTDKPCPENILL--SEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 Y + P+NI+L E + + ++ +++++E +N + Sbjct: 304 YEKRNIPKNIILDKKYEEDGDLIKGWVKAEKNKDVKLYFPSIDSRRKQLLEMGYLNLNEE 363 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 + + + L + L +P+RI+ +D S+I G AV M V + ++ Sbjct: 364 VEKYFKQKKILEEGLAKLKIELNLRKLPRRIDCFDISNIQGKDAVAAMTVAIDGNPDPSK 423 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YR F + D DD MMR L RR+S++ E +P+++++DG Sbjct: 424 YRHFKIQTKDTP--DDFHMMREALTRRYSKIPDEE----------------FPELILIDG 465 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GKGQL A V+ ++ + + IISIAK + E F ++ E + + D L +Q Sbjct: 466 GKGQLGVATEVIDSIDKSHLVDIISIAKREE-----EIFKSREREPYIFSKSDEALKILQ 520 Query: 532 RLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 R+RDEAHRF IT HRK R K S LD+I GIGP RK+ L+ FGT+K I +S E L Sbjct: 521 RIRDEAHRFGITYHRKLRSKRNVKSFLDDIYGIGPKRKKELINKFGTMKNIKEASIEELR 580 Query: 591 SIEGISKKIACKIYN 605 I + + IA KI Sbjct: 581 KI--VPEDIAIKIKE 593 >gi|88607092|ref|YP_505460.1| excinuclease ABC, C subunit [Anaplasma phagocytophilum HZ] gi|119367625|sp|Q2GJJ1|UVRC_ANAPZ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|88598155|gb|ABD43625.1| excinuclease ABC, C subunit [Anaplasma phagocytophilum HZ] Length = 614 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 220/611 (36%), Positives = 342/611 (55%), Gaps = 35/611 (5%) Query: 10 PGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEA 69 PGVY+M R+LYVGKA +L+KR+ SY+ N + + M+ QI + TVT E EA Sbjct: 27 PGVYKMFGTEDRLLYVGKAKDLKKRLSSYLSINRMSVNVYTMVKQIVRLEITVTENETEA 86 Query: 70 LLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY---FGPFA 126 LLLEA +IK LKP++NI++RDDK +PYIL + KHK P + HR+ +G Y +GPF Sbjct: 87 LLLEAKLIKSLKPKYNIIMRDDKFYPYILFS-KHKYPRIVLHRE-KRSEGRYTGLYGPFL 144 Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186 S I ++++ F LRSC D+ F R RPC+ ++IK CS PC +I+ E Y + V Sbjct: 145 SSVMTRHIIATIKKAFLLRSCPDNFFATRARPCIEYEIKNCSAPCMQKITEEDYAKAVQM 204 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA---ALSHIQNHNDSIYNRMD 243 A K L+G + ++ ++ M + + +DYESAI+ RDRL ++ I+ +D Sbjct: 205 AHKALTGQSKEIQCELFEMMCRFSNNQDYESAIVCRDRLHALKSMKECMGFQTGIHGDVD 264 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303 ++Y ++L C+Q FF G N G+ +F+++ +++A I++ F+ Q Y D P + Sbjct: 265 FIAVYKRQDLYCMQVVFFRDGVNYGSQPYFIESVGNASDADIVNMFMLQIYNDFPSVVYV 324 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 L + + ++ + + +V I +P ++ K + A A + +++ Sbjct: 325 DLPSDYDTN-IMSTAIKQLMKREVDIRLPATRDELKAMGLARNYAMEALNRRVRNTAQDT 383 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 L++F F L P+RIEIYDNSHI G G MVV G++G +K +YRKF N V Sbjct: 384 D-LEEFATFFDLLKAPERIEIYDNSHISGTHPYGVMVVCGKDGLLKKEYRKF--KINTVT 440 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DDC+MM V+ RRF ++ PD +++DGG+GQ SA G L Sbjct: 441 NGDDCSMMHEVISRRFKEIPD-----------------VLPDFILIDGGRGQRSAVYGEL 483 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 +L I IAKGP R AG E F+ GE L L+ +++F+ RLRDEAHRFAIT Sbjct: 484 SRLG----IPFACIAKGPGRVAGTEVFYFSNGEKLSLDPASKLMHFLCRLRDEAHRFAIT 539 Query: 544 THRKRR-KKAAYSPLD-EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 +HRK R K +S L +I GIG + + +L FG+++ + + E ++ + GIS K+A Sbjct: 540 SHRKSRDGKLQFSTLLNDIPGIGKTKGKAILAYFGSIQAMKHARVEEISKVPGISLKLAK 599 Query: 602 KIYNHFHKNTS 612 ++ ++ ++ + Sbjct: 600 RVADYLKESQT 610 >gi|22299296|ref|NP_682543.1| excinuclease ABC subunit C [Thermosynechococcus elongatus BP-1] gi|32130297|sp|Q8DI39|UVRC_THEEB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|22295479|dbj|BAC09305.1| excinuclease ABC subunit C [Thermosynechococcus elongatus BP-1] Length = 626 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 195/629 (31%), Positives = 301/629 (47%), Gaps = 41/629 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTVT 63 Q+P PGVY + D ++LY+GK+ L+ R++SY R+ M+ Q+ I F VT Sbjct: 18 QLPLAPGVYFLKDKTDQILYIGKSKRLRSRVRSYFREPAQLGPRLERMVYQVAEIEFIVT 77 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-------- 115 TE EAL LEAN+IK+ +P FN+LL+DDK +PY+ IT P ++ R Sbjct: 78 DTEAEALALEANLIKQHQPHFNVLLKDDKKYPYVCITWSEPYPRIFITRKRQFGNGGDPR 137 Query: 116 --TIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 + + Y+GP+ + +T+ ++R F LR +F R RPCL + I RC G C G Sbjct: 138 SDSAKDRYYGPYVDSFRLRQTLALVKRLFPLRQRPRPLF--RDRPCLNYDIGRCPGVCQG 195 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 IS ++Y + + G L ++ M QA ++E A RD++ L H+ Sbjct: 196 LISPQEYRQTLQRVAMIFQGRTGELVAQLQAQMAQAAADLNFELAARLRDQIRGLEHLGV 255 Query: 234 HNDSIYNR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYF 289 D +L A IQ G+ G F S + IL Sbjct: 256 DQKVSLPDDTVSRDAIALAVGDRHAAIQLFQIRAGRLVGRLAFVADAQSG-SAGTILQRV 314 Query: 290 LRQFY---TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 L + Y D P ILL E L ++ G V +TVP++ K ++I Sbjct: 315 LEEHYAQVEDVEIPSEILLQHPLPEPDFLRTYLSEKKGRAVTLTVPQRQAKAELIAMVQR 374 Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 NA + Q L+D + L +P RIE YD SHI G AV VV + Sbjct: 375 NAELELARLQQASDRTQTALEDLAQLLGLDTLPHRIEGYDISHIQGSDAVASRVVFIDGL 434 Query: 407 FVKNQYRKFNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWP 464 + YR +N+ +VK DD A + +L RRF+ ++ + WP Sbjct: 435 PAQQHYRHYNIRNPEVKLGHSDDFASLAEILRRRFAPYLEGQGETPD----------DWP 484 Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524 D++++DGGKGQLSA VL+ L E + +S+AK + + F + + L + Sbjct: 485 DIILIDGGKGQLSAVVQVLEPLLEELTL--VSLAKQRE-----DIFLPHQRQPLPADPEQ 537 Query: 525 PILYFIQRLRDEAHRFAITTH-RKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583 P + ++R+RDEAHRFA+ H +KR ++ S LD+I G+G R++ LL +F ++ I Sbjct: 538 PGVQLLRRVRDEAHRFALNFHRQKRAQRQRRSHLDQIPGLGYQRQKELLATFRSIDYIRM 597 Query: 584 SSPETLASIEGISKKIACKIYNHFHKNTS 612 ++PE LA + G+ ++A +IY +FH + Sbjct: 598 ATPEQLAQVNGVGPRLAARIYRYFHPDAD 626 >gi|58584629|ref|YP_198202.1| nuclease subunit of the excinuclease complex, UvrC [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|75497901|sp|Q5GSR4|UVRC_WOLTR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|58418945|gb|AAW70960.1| Nuclease subunit of the excinuclease complex, UvrC [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 606 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 228/605 (37%), Positives = 346/605 (57%), Gaps = 26/605 (4%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 P+ GVYQM+ +VLYVGKA NL+ R+ +Y+ N + R M+SQ+ + VT E Sbjct: 18 PQSCGVYQMIGDKDKVLYVGKAKNLKSRLSNYLRYENLSERTKFMLSQVIKVEVLVTENE 77 Query: 67 VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG-SYFGPF 125 ++ALLLEA +IK LKP +NI+ +D +S+PYI+I+ KH P + ++R Y+GPF Sbjct: 78 IDALLLEARLIKSLKPPYNIIFKDGRSYPYIVIS-KHNYPRIAQYRGKFKKGEFHYYGPF 136 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 SV AV++T+ SLQ+TF LR C+D F RPC+ +QIKRCS PC G+I+ + Y + V Sbjct: 137 ISVAAVKQTMLSLQKTFLLRVCSDQYFASTKRPCIEYQIKRCSAPCVGKITKDDYCQSVK 196 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND--SIYNRMD 243 + + L G N +K++++ M + + +E+YE A I+RDRL L IQ + S D Sbjct: 197 QTRDTLLGRNEKVKKQLSSTMEKCSKEENYELAAIYRDRLKFLEQIQMQSMDFSFEKDAD 256 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE-N 302 F + ++LACI F N G+ +F++ S+ + +ILS FL + Y P Sbjct: 257 FFGIARKEDLACIGVLSFRNKDNYGSTPYFVENCSDHPDDEILSTFLIKLYNSANIPPAQ 316 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 I +S+ ++E + +K K ++ +++ N+ RS QKL+ ++ Sbjct: 317 IYVSDFVTGKEIIEQALHNVTHKPIKALHAKSKKEHNLLKFVYDNSQRSLEQKLTDYKNN 376 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 ++ +K F LP+IPKR+E+YDNSH G VG MVV G+ GF+K++YRKF + + Sbjct: 377 LEKFEELSKIFLLPNIPKRVEVYDNSHTSGNQQVGVMVVAGKEGFLKSEYRKFTIKGEIL 436 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD MMR VL RRFS K+ PD +++DGG G +S Q V Sbjct: 437 G--DDYEMMREVLTRRFSNNTKD----------------VVPDFLLIDGGPGHISVVQNV 478 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 L LN+ + +AKG R+AG E+F++ E L ++ ++Q LR+EAHRFAI Sbjct: 479 LNTLNI--NVPFACMAKGSYRNAGNERFYMPNREDFTLKNDSKVMLYLQSLRNEAHRFAI 536 Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T+HRK+R K + SPL +I IG RK L+ FG+V+ IS++S + ++ ISK++A Sbjct: 537 TSHRKKRDKQFFVSPLSKITSIGDKRKNALMSHFGSVENISKASLAEIQNVARISKELAE 596 Query: 602 KIYNH 606 I H Sbjct: 597 VILKH 601 >gi|317504355|ref|ZP_07962341.1| excinuclease ABC subunit C [Prevotella salivae DSM 15606] gi|315664546|gb|EFV04227.1| excinuclease ABC subunit C [Prevotella salivae DSM 15606] Length = 615 Score = 441 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 170/628 (27%), Positives = 307/628 (48%), Gaps = 48/628 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 MPE PG YQ D ++YVGKA L++R+ SY H + ++S+I +I +TV Sbjct: 19 NMPEKPGSYQFYDENHTIIYVGKAKRLKQRVSSYFHKEVDRFKTKVLVSKIRDISYTVVK 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE ++IK+ PR+N+LL+D K++P I IT+ P ++K R + G+++GP Sbjct: 79 TEEDALLLENSLIKKYNPRYNVLLKDGKTYPSICITN-EYFPRIFKTRTINKHYGTFYGP 137 Query: 125 FASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 + V ++ ++ ++ RT L + + + + +PCL + I C GPC + S E+ Sbjct: 138 YPHVGSMNAILDIIKRLYKPRTCRLSLTKEGIAQGKFKPCLEYHIHNCGGPCINKQSYEE 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y E +++A++ L G + +++ R M + +E A +++++ L+ + ++ + Sbjct: 198 YQENMNQAREILKGNTREVSKRLYRLMMKNAELLKFEVAEDLKNKISLLNDFVSKSEVVS 257 Query: 240 NRMDCFSLY-----HNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 +D ++ N A I G + TF K + + ++L + Sbjct: 258 YTIDDVDVFTIIDDDNNRNAYINYIHVRKGTINQSFTFEYKRKLDERDEELLITAIPDIR 317 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 ++ E + E +P++G+K+ ++E + +N + Sbjct: 318 ERFKSHAKEIIVPFEMEWKMKE----------ATFVIPQRGDKKHLLELSEMNGKQYKFD 367 Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 +L E ++K+ +K LP +P +IE +DNS+I G AV +V Sbjct: 368 RLKQAEKLNPEQKQTRLMKELQEKLRLPKLPYQIECFDNSNISGTDAVAGCIVYKGMKPS 427 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 + YRK+N+ V+ DD A M+ V+ RR+S++ + PD++I Sbjct: 428 RKDYRKYNIKT--VEGPDDYASMQEVVRRRYSRMKEEH--------------LPLPDLII 471 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 DGGKGQ+ + V+ ++ I I +AK + E + + + L+++ + Sbjct: 472 TDGGKGQMDVVKEVVVDE-LQLDIPIAGLAKDDRHRT-NELLYGFPPQTVGLDIKSELFK 529 Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 + +++DE HRFAIT HR +R K A +S LD+I G+GP K LL+ TVK I + + Sbjct: 530 VLTQIQDEVHRFAITFHRDKRSKHALHSELDDIKGLGPKGKEALLKRLKTVKGIKDADYQ 589 Query: 588 TLASIEGISKKIACKIYNHFHKNTSHTP 615 + SI G + +Y HFH ++ T Sbjct: 590 EIVSILG--QAKGTLVYKHFHPDSPTTE 615 >gi|258648860|ref|ZP_05736329.1| excinuclease ABC subunit C [Prevotella tannerae ATCC 51259] gi|260850880|gb|EEX70749.1| excinuclease ABC subunit C [Prevotella tannerae ATCC 51259] Length = 613 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 168/621 (27%), Positives = 301/621 (48%), Gaps = 36/621 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PG YQ L+ G+++YVGKA NL++R+ SY + + + H++ +I +IR+ V Sbjct: 19 NLPEKPGCYQYLNADGKIIYVGKAKNLKRRVSSYFTNPKQSFKTQHLVPKIRDIRYVVVN 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE N+IKR KP +N+LL+DDK++P I I++ +P ++K R + ++FGP Sbjct: 79 TEEDALLLENNLIKRYKPHYNVLLKDDKTYPSIAISN-EYLPRVFKVRKRAGKGATFFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFR-----HRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ V + + + + R C + + + CL + I C+ PC G+ + + Sbjct: 138 YSHVPTMYALLELCHKLYRPRPCRTPMTKEGVESGKYDLCLEYHIGNCAAPCVGKQTWDD 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237 Y + + K+ L G L+ I M + +E+A + + LS+ + ++ Sbjct: 198 YNKNIAACKEILRGNTAELERNIKARMLEEAEHLRFEAAEALKQQYLLLSNYRAKSEIVS 257 Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + + +D F++ + +A I G TF K ++ ++LS + + Sbjct: 258 SVIHNLDVFNIESEEKVAYINYLHVTNGNITQAFTFEYKKRLGESDEELLSLGIVEMRAR 317 Query: 297 KPC-PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 I++ + Q G K K+ + ++ L A K Sbjct: 318 YHSQSAEIVVPFALDLPESYATQTIPQKGDKKKLLELSKLNVKQYKFDRLKQAD-----K 372 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L+ E ++++ ++ L +P RIE++DNS++ G AV VV + K YRK+ Sbjct: 373 LNPEQKSVRLMQEIQRELGLSQLPYRIELFDNSNLQGSDAVAACVVFEKLRPAKKAYRKY 432 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ V DD A M+ V+ RR+++LI+ + L P+++I DGGKGQ Sbjct: 433 NIKT--VSGPDDYASMQEVVRRRYTRLIEEGQPL--------------PNLIIADGGKGQ 476 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 + + V++ ++ I I +AK E F ++ + + + ++D Sbjct: 477 MEVIRQVVED-ELKLSIPIAGLAKDDHHRT-RELLFGFPPLSIGMKADSYLFRLLTSMQD 534 Query: 536 EAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E HRFAIT HR++R K S LD+I G+G K LLLQ FG++K I ++ L ++ G Sbjct: 535 EVHRFAITFHRQKRSKRQTASRLDQIAGVGEKTKSLLLQKFGSLKRIEEATCPQLQAVLG 594 Query: 595 ISKKIACKIYNHFHKNTSHTP 615 K K++ + H+ ++ Sbjct: 595 --TKRGAKLFENLHQMAANQE 613 >gi|160943016|ref|ZP_02090254.1| hypothetical protein FAEPRAM212_00493 [Faecalibacterium prausnitzii M21/2] gi|158445710|gb|EDP22713.1| hypothetical protein FAEPRAM212_00493 [Faecalibacterium prausnitzii M21/2] Length = 617 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 162/613 (26%), Positives = 287/613 (46%), Gaps = 15/613 (2%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVTC 64 +P PGVY + D + ++Y+GKA L+ R+ Y H ++++ MI+ V Sbjct: 13 LPLLPGVYIIRDKSDTIIYIGKAKRLRIRVSQYFREGVPHDNKVSQMIAHAYAFDVIVCQ 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EAL+LEA+ IK P++NILL+DDK + YI +T + P L Y GP Sbjct: 73 SEFEALVLEASQIKAHTPKYNILLKDDKGYSYIRVT-REDWPRLSFTLQKEEDGAEYIGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSEKYME 182 + S A + + F L C+ + + RPCL I +C C+G+IS E Y + Sbjct: 132 YTSSFAARQMAETAMDAFLLPRCSKRFPQEIGKGRPCLNAHIGKCMAVCSGKISCETYNQ 191 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR- 241 V A + G ++ + + M +A+ + ++E+A + RD++ A++ + + + Sbjct: 192 AVKNAVHLIRYGKKDILKTLNERMQEASDRLEFETAALLRDQINAITKLTAGQKVVVDPD 251 Query: 242 --MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 MD +L + C F G+ FL D+ +A + R + D+ Sbjct: 252 VEMDVVALAGTPDSVCAAVLRFREGR-LTDKREFLFHDTSDIDAVREEFLPRYYLDDEQI 310 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P+ I + + L+ + ++ G +V++ VP++G+K ++E A NA ++ Sbjct: 311 PKIIAVDALPPDMDALQQALNQKRGSEVQLYVPQRGDKAHLVEMAHTNAVERLARESGRY 370 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + +L + + L P+ IE YD S+ S+V MV + K YRKF + Sbjct: 371 AREEKLLDELAQVLGLSKPPRAIESYDISNWGDGSSVCGMVTFKDGKPFKAGYRKFKMKT 430 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 V DD A + + RR ++ K + F PD++++DGG+GQ+SAA Sbjct: 431 --VAGTDDYASLAETVSRRAAEYEKYAAQAENG-QPSGNWFGQKPDLLLMDGGRGQVSAA 487 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 + L + + + + + K G + +NM FI ++DE HR Sbjct: 488 KDALAGTALAD-VPLYGMVKDDHHRTRA--IVDSDGREIAINMNRGTFTFITAIQDETHR 544 Query: 540 FAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FA +++ K K+ S L E+ G+GP + LL F +V + ++P+ L + G+ ++ Sbjct: 545 FANAYRKQQMKQKSYSSTLTEVPGVGPKTAKALLAQFKSVGAVKDATPDQLENTPGVGRQ 604 Query: 599 IACKIYNHFHKNT 611 +A IY +FH+ Sbjct: 605 LAQTIYEYFHREA 617 >gi|295103457|emb|CBL01001.1| Excinuclease ABC subunit C [Faecalibacterium prausnitzii SL3/3] Length = 617 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 162/613 (26%), Positives = 288/613 (46%), Gaps = 15/613 (2%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVTC 64 +P PGVY + D + ++Y+GKA L+ R+ Y H ++++ MI+ V Sbjct: 13 LPLLPGVYIIRDKSDTIIYIGKAKRLRIRVSQYFREGVPHDNKVSQMIAHAYAFDVIVCQ 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EAL+LEA+ IK P++NILL+DDK + YI +T + P L Y GP Sbjct: 73 SEFEALVLEASQIKAHTPKYNILLKDDKGYSYIRVT-REDWPRLSFTLQKEEDGAEYIGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSEKYME 182 + S A + + F L C+ + + RPCL I +C C+G+IS E Y + Sbjct: 132 YTSSFAARQMAETAMDAFLLPRCSKRFPQEIGKGRPCLNAHIGKCMAVCSGKISCETYNQ 191 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR- 241 V A + G ++ + + M +A+ + ++E+A + RD++ A++ + + + Sbjct: 192 AVKNAVHLIRYGKKDILKTLNERMQEASDRLEFETAALLRDQINAITKLTAGQKVVVDPD 251 Query: 242 --MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 MD +L + C F G+ FL D+ +A + R + D+ Sbjct: 252 VEMDVVALAGTPDSVCAAVLRFREGR-LTDKREFLFHDTSDIDAVREEFLPRYYLDDEQI 310 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P+ I + + L+ + ++ G +V++ VP++G+K ++E A NA ++ Sbjct: 311 PKIIAVDALPPDMDALQQALNQKRGSEVQLYVPQRGDKAHLVEMAHTNAVERLARESGRY 370 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + +L + + L P+ IE YD S+ S+V MV + K YRKF + Sbjct: 371 AREEKLLDELAQVLGLSKSPRAIESYDISNWGDGSSVCGMVTFKDGKPFKAGYRKFKMKT 430 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 V DD A + + RR ++ K + F PD++++DGG+GQ+SAA Sbjct: 431 --VAGTDDYASLAETVSRRAAEYEKYAAQAESGQSSGNW-FGQKPDLLLMDGGRGQVSAA 487 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 + L + + + + + K G + +NM FI ++DE HR Sbjct: 488 KEALAGTALAD-VPLYGMVKDDHHRTRA--IVDSDGREIAINMNRGTFTFITAIQDETHR 544 Query: 540 FAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FA +++ K K+ S L E+ G+GP + LL F +V + ++P+ L + G+ ++ Sbjct: 545 FANAYRKQQMKQKSYSSTLTEVPGVGPKTAKALLTQFKSVGAVKDATPDQLENTPGVGRQ 604 Query: 599 IACKIYNHFHKNT 611 +A IY++FH+ Sbjct: 605 LAQTIYDYFHREA 617 >gi|282858646|ref|ZP_06267804.1| excinuclease ABC, C subunit [Prevotella bivia JCVIHMP010] gi|282588564|gb|EFB93711.1| excinuclease ABC, C subunit [Prevotella bivia JCVIHMP010] Length = 613 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 168/627 (26%), Positives = 308/627 (49%), Gaps = 50/627 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 MPE PG YQ D + ++Y+GKA NL++R+ SY H + ++S+I +I ++V Sbjct: 19 SMPEKPGTYQYYDESHTIIYIGKAKNLKRRVASYFHKEVDRFKTKILVSKIFDISYSVVN 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALL+E +IK+ +PR+N+LL+D K++P I +T+ P ++ R + G++FGP Sbjct: 79 TEEDALLIENQLIKQYQPRYNVLLKDGKTYPSICVTN-EYFPRIFNTRTINKKYGTFFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + ++ + +++T+ R+C + + + + +PCL + I C PC + + E Sbjct: 138 YSHISSMYAILAIIKKTYKPRTCRFPITKEGILKGKYKPCLEYHIGNCGAPCINKQTYED 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y E + +AK+ L G +++ + + M Q + +E A I + + AL + ++ + Sbjct: 198 YQENIRQAKEILKGNTRDVQRILRQQMEQYAEELRFEEAEICKQKFIALENFAAKSEIVS 257 Query: 240 NRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + ++ N A I G + T+ K + ++A++L+ + + Sbjct: 258 YTITDVDVFSIDNDETNKNAFINYIHVTNGAINQSFTYEYKRKLDESDAELLNEAIPEIR 317 Query: 295 TDKPCP-ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 + I++ E + +P++G+KR ++E + +NA + Sbjct: 318 ERFKSKAKEIIVPFELDFK-----------IKGADFFIPQRGDKRHLLELSQMNAKQYKF 366 Query: 354 QKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 +L E ++ + K LP +P IE +DNS+I G AV +V + Sbjct: 367 DRLKQTEKLNPEQKQTRLMTELRDKLKLPKLPYTIECFDNSNISGTDAVAGCIVYKKMKP 426 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 K YRK+N+ V+ DD A M+ V+ RR+S++ + PD++ Sbjct: 427 SKKDYRKYNIKT--VEGPDDYASMQEVVRRRYSRMQEEG--------------TPLPDLI 470 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPIL 527 I DGGKGQ+ + V++ + +I I +AK K E + + + L + Sbjct: 471 ITDGGKGQMEVVRAVIED-ELHLQIPIAGLAKNNKHRT-NELLYGFPPQTIGLKTDSELF 528 Query: 528 YFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586 + +++DE HR+AI+ HR +R K +S LD+I GIG K LL+ F TV+ I + Sbjct: 529 KALTQIQDEVHRYAISFHRNKRSKHQLHSELDDIQGIGTKTKETLLKEFKTVQKIKTTDI 588 Query: 587 ETLASIEGISKKIACKIYNHFHKNTSH 613 + L +I I K A I+N+FH T+ Sbjct: 589 QELTNI--IGKSKATLIFNYFHPLTAE 613 >gi|239631575|ref|ZP_04674606.1| excinuclease ABC subunit C [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066394|ref|YP_003788417.1| nuclease subunit of the excinuclease complex [Lactobacillus casei str. Zhang] gi|239526040|gb|EEQ65041.1| excinuclease ABC subunit C [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438801|gb|ADK18567.1| Nuclease subunit of the excinuclease complex [Lactobacillus casei str. Zhang] Length = 602 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 165/611 (27%), Positives = 280/611 (45%), Gaps = 40/611 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG YQM DI G+++YVGKA NL+ R++SY ++H ++ M+SQ+ + F VT T Sbjct: 13 LPDLPGSYQMKDINGKIIYVGKAKNLKNRVRSYF-KSSHDGKVAAMVSQVADFDFIVTST 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 + EA LLE +I++ +P +NI L+ +PYI IT + P + G YFGP+ Sbjct: 72 DKEAFLLEITLIQKYQPYYNIKLKKGTGYPYIKIT-HERDPKIEITGTIRKDGGYYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A ++T++ +Q+ + LR C RPCL + + +C G C + ++Y + + Sbjct: 131 PNVYAAQETMHFIQKVYPLRRCNGYQ----GRPCLYYHMGQCLGACFRTVPEKEYTDQIE 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 K+FL+G K + M +A +E A RD+L + I + Sbjct: 187 RIKRFLNGNVGKAKASLTAKMERAAKNLQFERAAEIRDQLHYIEQTVEKQKIISHDNTTR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ Y +K IQ F + + + + + P Sbjct: 247 DLFNFYMDKGWISIQVFFIRQARLMKRESRLFPVVNTAKEEFESFILQFYSRKNNVKPRE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR----SHTQKLST 358 +L+ + L +I ++ + P++GEKR ++ A N+ Sbjct: 307 VLVPAGLDNKVLADIL-------EIPVRTPQRGEKRDLMALAAKNSQIKLEDKFRLMELD 359 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + +K+ LP E +D+SHI G V MV + KN YRK+ L Sbjct: 360 NRTTIGAMKELMAALNLPMG-HVAEAFDHSHIQGADPVSAMVQFVDGQPAKNNYRKYKLD 418 Query: 419 PNDVKTQDDCAMM-RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + D A R V+ RR+++L+K PD++++DGG+ +++ Sbjct: 419 ADKTHNGADEAANTREVIRRRYTRLLKER--------------APLPDLILMDGGEIEMN 464 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 AA+ VL + + I + + K K F + + L+ + Y ++R++DE Sbjct: 465 AAKDVL-ENELNLDIPVAGMVKNNKHKTAA-LLFGNADQLINLDPKSQGFYLLERIQDEV 522 Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K + S L+ I G+GP + LL+ F T+ I + E + + GIS Sbjct: 523 HRFAITFHRQLHAKNSLASRLEGIKGVGPKTRLKLLRKFKTINKIKEAPLEDIQEL-GIS 581 Query: 597 KKIACKIYNHF 607 KK+A + Sbjct: 582 KKVAQALKLSL 592 >gi|191638340|ref|YP_001987506.1| excinuclease ABC subunit C [Lactobacillus casei BL23] gi|229558037|sp|B3WE47|UVRC_LACCB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|190712642|emb|CAQ66648.1| UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C) [Lactobacillus casei BL23] gi|327382367|gb|AEA53843.1| UvrABC system protein C [Lactobacillus casei LC2W] gi|327385568|gb|AEA57042.1| UvrABC system protein C [Lactobacillus casei BD-II] Length = 602 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 165/611 (27%), Positives = 280/611 (45%), Gaps = 40/611 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG YQM DI G+++YVGKA NL+ R++SY ++H ++ M+SQ+ + F VT T Sbjct: 13 LPDLPGSYQMKDINGKIIYVGKAKNLKNRVRSYF-KSSHDGKVAAMVSQVADFDFIVTST 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 + EA LLE +I++ +P +NI L+ +PYI IT + P + G YFGP+ Sbjct: 72 DKEAFLLEITLIQKYQPYYNIKLKKGTGYPYIKIT-HERDPKIEITGTIRKDGGYYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A ++T++ +Q+ + LR C RPCL + + +C G C + ++Y + + Sbjct: 131 PNVYAAQETMHFIQKVYPLRRCNGYQ----GRPCLYYHMGQCLGACFRTVPEKEYTDQIE 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 K+FL+G K + M +A +E A RD+L + I + Sbjct: 187 RIKRFLNGNVGKAKASLTAKMERAAKNLQFERAAEIRDQLHYIEQTVEKQKIISHDNTTR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ Y +K IQ F + + + + + P Sbjct: 247 DLFNFYMDKGWISIQVFFIRQARLMKRESRLFPVVNTAKEEFESFILQFYSRKNNVKPRE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR----SHTQKLST 358 +L+ + L +I ++ + P++GEKR ++ A N+ Sbjct: 307 VLVPAALDNKVLADIL-------EIPVRTPQRGEKRDLMALAAKNSQIKLEDKFRLMELD 359 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + +K+ LP E +D+SHI G V MV + KN YRK+ L Sbjct: 360 NRTTIGAMKELMAALNLPMG-HVAEAFDHSHIQGADPVSAMVQFVDGQPAKNNYRKYKLD 418 Query: 419 PNDVKTQDDCAMM-RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + D A R V+ RR+++L+K PD++++DGG+ +++ Sbjct: 419 ADKTHNGADEAANTREVIRRRYTRLLKER--------------APLPDLILMDGGEIEMN 464 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 AA+ VL + + I + + K K F + + L+ + Y ++R++DE Sbjct: 465 AAKDVL-ENELNLDIPVAGMVKNNKHKTAA-LLFGNADQLINLDPKSQGFYLLERIQDEV 522 Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K + S L+ I G+GP + LL+ F T+ I + E + + GIS Sbjct: 523 HRFAITFHRQLHAKNSLASRLEGIKGVGPKTRLKLLRKFKTINKIKEAPLEDIQEL-GIS 581 Query: 597 KKIACKIYNHF 607 KK+A + Sbjct: 582 KKVAQALKLSL 592 >gi|116494833|ref|YP_806567.1| excinuclease ABC subunit C [Lactobacillus casei ATCC 334] gi|122263749|sp|Q039J7|UVRC_LACC3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|116104983|gb|ABJ70125.1| Excinuclease ABC subunit C [Lactobacillus casei ATCC 334] Length = 602 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 165/611 (27%), Positives = 280/611 (45%), Gaps = 40/611 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG YQM DI G+++YVGKA NL+ R++SY ++H ++ M+SQ+ + F VT T Sbjct: 13 LPDLPGSYQMKDINGKIIYVGKAKNLKNRVRSYF-KSSHDGKVAAMVSQVADFDFIVTST 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 + EA LLE +I++ +P +NI L+ +PYI IT + P + G YFGP+ Sbjct: 72 DKEAFLLEITLIQKYQPYYNIKLKKGTGYPYIKIT-HERDPKIEITGTIRKDGGYYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A ++T++ +Q+ + LR C RPCL + + +C G C + ++Y + + Sbjct: 131 PNVYAAQETMHFIQKVYPLRRCNGYQ----GRPCLYYHMGQCLGACFRTVPEKEYTDQIE 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 K+FL+G K + M +A +E A RD+L + I + Sbjct: 187 RIKRFLNGNVGKAKASLTAKMERAAKNLQFERAAEIRDQLHYIEQTLEKQKIISHDNTTR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ Y +K IQ F + + + + + P Sbjct: 247 DLFNFYMDKGWISIQVFFIRQARLMKRESRLFPVVNTAKEEFESFILQFYSRRNNVKPRE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR----SHTQKLST 358 +L+ + L +I ++ + P++GEKR ++ A N+ Sbjct: 307 VLVPAGLDNKVLADIL-------EIPVRTPQRGEKRDLMALAAKNSQIKLEDKFRLMELD 359 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + +K+ LP E +D+SHI G V MV + KN YRK+ L Sbjct: 360 NRTTIGAMKELMAALNLPMG-HVAEAFDHSHIQGADPVSAMVQFVDGQPAKNNYRKYKLD 418 Query: 419 PNDVKTQDDCAMM-RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + D A R V+ RR+++L+K PD++++DGG+ +++ Sbjct: 419 ADKTHNGADEAANTREVIRRRYTRLLKER--------------APLPDLILMDGGEIEMN 464 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 AA+ VL + + I + + K K F + + L+ + Y ++R++DE Sbjct: 465 AAKDVL-ENELNLDIPVAGMVKNNKHKTAA-LLFGNADQLINLDPKSQGFYLLERIQDEV 522 Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K + S L+ I G+GP + LL+ F T+ I + E + + GIS Sbjct: 523 HRFAITFHRQLHAKNSLASRLEGIKGVGPKTRLKLLRKFKTINKIKEAPLEDIQEL-GIS 581 Query: 597 KKIACKIYNHF 607 KK+A + Sbjct: 582 KKVAQALKLSL 592 >gi|237740769|ref|ZP_04571250.1| excinuclease ABC subunit C [Fusobacterium sp. 2_1_31] gi|229422786|gb|EEO37833.1| excinuclease ABC subunit C [Fusobacterium sp. 2_1_31] Length = 589 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 193/613 (31%), Positives = 308/613 (50%), Gaps = 39/613 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PGVY M +V+YVGKA NL+ R+ SY + + + + ++ I +I F +T Sbjct: 7 NIPESPGVYLMK-KNNKVIYVGKAKNLKNRVSSYFNRVHESEKTNELVKNIEDIEFFLTN 65 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST---IQGSY 121 TE++ALLLE N+IK+ P++NILL+D+K++P+I I+ K P++ R + G Y Sbjct: 66 TEIDALLLENNLIKKYSPKYNILLKDEKTYPFIKIS-KEDFPSIKIVRTTKALDIKTGEY 124 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + L + F +R C + + RPCL + +K C+GPC + E Y Sbjct: 125 FGPYP--YGAWRLKAVLMKLFKIRDCNRDMKKKSQRPCLKYYMKSCTGPCVYKDIKEDYD 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + K+ L G + L +++ MN++ + D+E +II+R+++ L +I N Y R Sbjct: 183 NDIESLKQVLRGNSSKLISELSILMNKSAEEMDFEKSIIYREQIKELKNIANSQIIQYER 242 Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F + A I G+ G + L ++ T+ + +Y+ Sbjct: 243 ELDEDIFVFKTILDKAFICVLNMRDGKILGKTSTSLDLKNKITDN-VFEAIFMSYYSKHI 301 Query: 299 CPENILLSEEAEET--SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P++++L E E ++E + K + ++ ++E A N R Sbjct: 302 LPKSLVLDAEYENELAVVVEALTLEDSKKKEFHFPKIKSRRKDLLEMAYKNLERDIETYF 361 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 S + + + +KD L P+RIE +D S+I G AV M V E K +YRKF Sbjct: 362 SKKDTIEKGIKDLHDILNLKRFPRRIECFDISNIQGKDAVASMSVSIEGRAAKKEYRKFK 421 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + D DD +MMR V+ERR+S+L + +PDV+++DGG GQ+ Sbjct: 422 IRCKDTP--DDFSMMREVIERRYSKLADKD----------------FPDVILIDGGLGQI 463 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 ++A VLKKL + ++S+AK + E + + L+ L QR+RDE Sbjct: 464 NSAGEVLKKLGKIHLSELLSLAKRDE-----EIYKYGESVPYSLSKDMEALKIFQRVRDE 518 Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 AHRF IT HRK R K S LD I GIG +R++ LL FG+V I ++S E L I + Sbjct: 519 AHRFGITYHRKLRSKRIISSELDRIEGIGEVRRKKLLTKFGSVSAIKKASIEELKEI--V 576 Query: 596 SKKIACKIYNHFH 608 +K+A +I NH Sbjct: 577 PEKVALEIKNHIK 589 >gi|313679646|ref|YP_004057385.1| excinuclease ABC subunit c [Oceanithermus profundus DSM 14977] gi|313152361|gb|ADR36212.1| Excinuclease ABC subunit C [Oceanithermus profundus DSM 14977] Length = 597 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 188/618 (30%), Positives = 302/618 (48%), Gaps = 36/618 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P PGVY GRV+YVGKA NL+ R+ Y H + RI ++ + + F VT Sbjct: 8 RLPSRPGVYLWK-RDGRVIYVGKAKNLRARVNHYAHGEDKAGRI---FAEADALEFIVTR 63 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 EVEALLLEAN+IK +P FN+L++DDK +P++ +T+ P L R Y+GP Sbjct: 64 DEVEALLLEANLIKAHRPEFNVLMKDDKHYPFLKLTN-ETFPTLVVTRRVEDDGARYWGP 122 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F AV + + R F LR + + R RPCL + RC PC G E Y V Sbjct: 123 FPDAGAVRRIKRLVDRVFPLRKNSGVPMKKRRRPCLNHAMGRCLAPCVGRADPEAYARVV 182 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHI----QNHNDSIYN 240 ++ L G +L E++A M +A + +E A RD++ AL Q Sbjct: 183 RRVEQLLDGRVDDLLEELAVRMEEAARAQHFELAAELRDQIRALERFFASGQQAYAVGLG 242 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 +D L + A +Q G+ G + F++ E+T+A++L FLR +Y Sbjct: 243 DLDAVGLARSGAYAMVQLFQIRGGRMLGRTSRFVENAGEATDAEVLEAFLRDYYLVASPL 302 Query: 301 ENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS-- 357 ++L A E + + ++ G KV++ VPK+GEK ++++ A NA +L+ Sbjct: 303 PPLVLLPLATEGQEVFARALAERAGRKVELRVPKRGEKVRLVQFASENARAGLEVELARL 362 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + L + L P RIE YD S++ G + V + V K+QYR+ + Sbjct: 363 EKRGDHPALASLQRALGLARRPWRIEGYDVSNLFGTAVVAAIAVFEGGRPKKSQYRRMRI 422 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 DD M + RRF+ ++ + PD++++DGG GQ+ Sbjct: 423 RG-LAGKPDDYKAMEEAVYRRFTGSLQTKMES--------------PDLLLIDGGLGQVR 467 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 AAQ L++ V + ++ +AK E + GE ++ + DP L + LRDE Sbjct: 468 AAQKALERAGVS--LPLVGLAKRE------EVLVLPSGERVMRPLDDPGLRLLIHLRDET 519 Query: 538 HRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRF + +R+ R KK S D+I GIGP RK++LL+ F T++ + + PE LA + G++ Sbjct: 520 HRFGLAYNRQLRGKKTLKSVFDDIPGIGPARKKVLLERFSTLEELRATPPERLAELPGMN 579 Query: 597 KKIACKIYNHFHKNTSHT 614 ++ A + H ++ + + Sbjct: 580 RRAAEAVLRHLNEAAARS 597 >gi|299144096|ref|ZP_07037176.1| excinuclease ABC subunit C [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518581|gb|EFI42320.1| excinuclease ABC subunit C [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 601 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 188/612 (30%), Positives = 298/612 (48%), Gaps = 26/612 (4%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVTCTEVEALLLE 73 M DI ++YVGKA +L+KRI+ Y S +++ ++ M+S IN+ + + E+E+L+LE Sbjct: 1 MKDINDNIIYVGKAKSLRKRIRQYFSSYGNSNVKVKTMVSNINDFEYIIVENEIESLILE 60 Query: 74 ANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEK 133 +N+IK P++NI+LRDDK +PYI IT + P + + R YFGP+ + AV + Sbjct: 61 SNLIKDNHPKYNIVLRDDKQYPYIKITINERFPRVLRTRLILNDGAKYFGPYPAASAVNE 120 Query: 134 TINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFL 191 I+ +R F LR+C+ ++ ++ R RPCL + I +C PC + +KY + ++E +FL Sbjct: 121 AIDIFERLFKLRTCSLNLEKNNIRYRPCLNYFIGKCLAPCHENVDEDKYNDIINEITEFL 180 Query: 192 SGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN----RMDCFSL 247 SG + N+ + NMN + K ++E A RD + AL + D + Sbjct: 181 SGKSKNIIHILEENMNMESKKLNFEVAANFRDGIKALEILNEKQIISNTDFSENRDVIGV 240 Query: 248 YHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-KPCPENILLS 306 +Q F G+ G + +K + IL+ F++QFY+ P I++ Sbjct: 241 ARGIEQILVQIFFIRAGKIIGREHYIIKDYLNNDIESILNAFIKQFYSGVAFIPREIVVE 300 Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR----SHTQKLSTEISH 362 E + +LE + KV I PK+G+K+ ++ A NA + Sbjct: 301 SEPYDKDVLESYLSDKRSGKVSIISPKRGDKKDLVIMAKKNALDMISKYEDNYSEKIKKN 360 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 LK+ L PKRIE YD S+I G +V MVV + K+ YRKF V Sbjct: 361 TYALKEIQNLLELEVFPKRIESYDISNISGVQSVASMVVFEDGIAKKSDYRKF--KIQSV 418 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD A M+ VL RRF + I + SF ++PD+++LDGGKGQ++ + Sbjct: 419 VGPDDYASMKEVLNRRFIRGIDEKNKNIVS------SFSNFPDLIMLDGGKGQVNIVLEI 472 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 L L + I + + K + + L + I ++++E HRFAI Sbjct: 473 LLNLGI--NIPVCGLVKDEFHTTRG---IIYNNREFNLKINSNGYRMIYKIQEEVHRFAI 527 Query: 543 TTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 HR R K S LD I+ IG RK L+Q F ++ I + + L ++GI+ K A Sbjct: 528 NYHRLLRSKNLFKSELDLIDNIGKKRKEYLMQHFKSLDKIKNAELDELLEVKGINSKAAN 587 Query: 602 KIYNHFHKNTSH 613 IY +FH Sbjct: 588 SIYLYFHGGEHG 599 >gi|313827883|gb|EFS65597.1| excinuclease ABC subunit C [Propionibacterium acnes HL063PA2] Length = 679 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 174/579 (30%), Positives = 280/579 (48%), Gaps = 44/579 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D G+V+YVGKA NL+ R+ SY + R M++ ++++TV Sbjct: 13 TIPTQPGVYRFSDAHGQVIYVGKAKNLRNRLNSYFQDISALHPRTQRMVTTAAHVQWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 EVE+L LE IK PRFN++ RDDKS+P++ T + P ++ R + Y+G Sbjct: 73 QNEVESLQLEYTWIKEFDPRFNVMYRDDKSYPWLCFTWTDEYPRVFVGRGAHHKGWRYYG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180 PF A+ T+ +L R F +RSC+ VF +++ RPCLL I +CS PC I+S+ + Sbjct: 133 PFGQAWAIRDTVETLLRVFPMRSCSTGVFNRAKNQGRPCLLGYIGKCSAPCVERITSQAH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E E F++G + +++ M +A+ ++E A + RD L ALS N + Sbjct: 193 REIADEFCDFMAGRTTKIVKRLESQMAEASENLEFERAAVIRDSLGALSKTLERNAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294 D S+ + ++ G+ RG + ++ A+++ FL Q Y Sbjct: 253 DGTDADVISMALDPLEVGVKIFHVRGGRIRGERGWVADRADDADEAELMETFLTQLYGVN 312 Query: 295 ----------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344 P +++S E ++ + G V+I VP++G+K +++ Sbjct: 313 ASDGQVRDDGHGNAVPPLVIVSAEPTNPDVMSTILSSERGSHVEIRVPRRGDKATLMDTV 372 Query: 345 LINAHRSHTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMV 400 NA + Q S L++ + L P RIE YD SHI G + VG MV Sbjct: 373 TRNAQETLAQHKLKRASDLATRTRALEEIQESLGLDRAPLRIESYDISHIQGTNVVGSMV 432 Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE------------- 447 V + K++YR+F++ + DD A M VL RR +LI++ + Sbjct: 433 VFEDGMPRKSEYRRFSIKG--FEGSDDFAAMHEVLSRRLRRLIEDRDAMAAAQTPDGDVG 490 Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507 +L F P ++++DGG Q+ AAQ VL++ +E+ I + +AK + Sbjct: 491 SLIDPTTGSPRKFAYAPHLIVVDGGAPQVHAAQQVLEEFGLEDEIALCGLAKRLE----- 545 Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546 E + + ++L LY +QRLRDEAHRFAIT HR Sbjct: 546 EVWLPDEEWPVILPRTSEGLYLLQRLRDEAHRFAITFHR 584 >gi|227535171|ref|ZP_03965220.1| UvrABC system protein C (protein UvrC) [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187216|gb|EEI67283.1| UvrABC system protein C (protein UvrC) [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 632 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 166/611 (27%), Positives = 280/611 (45%), Gaps = 40/611 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG YQM DI G+++YVGKA NL+ R++SY ++H ++ M+SQ+ + F VT T Sbjct: 43 LPDLPGSYQMKDINGKIIYVGKAKNLKNRVRSYF-KSSHDGKVAAMVSQVADFDFIVTST 101 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 + EA LLE +I++ +P +NI L+ +PYI IT + P + G YFGP+ Sbjct: 102 DKEAFLLEITLIQKYQPYYNIKLKKGTGYPYIKIT-HERDPKIEITGTIRKDGGYYFGPY 160 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A +KT++ +Q+ + LR C RPCL + + +C G C + ++Y + + Sbjct: 161 PNVYAAQKTMHFIQKVYPLRRCNGYQ----GRPCLYYHMGQCLGACFRTVPEKEYTDQIE 216 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 K+FL+G K + M +A +E A RD+L + I + Sbjct: 217 RIKRFLNGNVGKAKASLTAKMERAAKNLQFERAAEIRDQLHYIEQTVEKQKIISHDNTTR 276 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ Y +K IQ F + + + + + P Sbjct: 277 DLFNFYMDKGWISIQVFFIRQARLMKRESRLFPVVNTAKEEFESFILQFYSRKNNVKPRE 336 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR----SHTQKLST 358 +L+ + L +I ++ + P++GEKR ++ A N+ Sbjct: 337 VLVPAGLDNKVLADIL-------EIPVRTPQRGEKRDLMALAAKNSQIKLEDKFRLMELD 389 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + +K+ LP E +D+SHI G V MV + KN YRK+ L Sbjct: 390 NRTTIGAMKELMAALNLPMG-HVAEAFDHSHIQGADPVSAMVQFVDGQPAKNNYRKYKLD 448 Query: 419 PNDVKTQDDCAMM-RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + D A R V+ RR+++L+K PD++++DGG+ +++ Sbjct: 449 ADKTHNGADEAANTREVIRRRYTRLLKER--------------APLPDLILMDGGEIEMN 494 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 AA+ VL + + I + + K K F + + L+ + Y ++R++DE Sbjct: 495 AAKDVL-ENELNLDIPVAGMVKNNKHKTAA-LLFGNADQLINLDPKSQGFYLLERIQDEV 552 Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K + S L+ I G+GP + LL+ F T+ I + E + + GIS Sbjct: 553 HRFAITFHRQLHAKNSLASRLEGIKGVGPKTRLKLLRKFKTINKIKEAPLEDIQEL-GIS 611 Query: 597 KKIACKIYNHF 607 KK+A + Sbjct: 612 KKVAQALKLSL 622 >gi|325859884|ref|ZP_08173014.1| excinuclease ABC, C subunit [Prevotella denticola CRIS 18C-A] gi|325482810|gb|EGC85813.1| excinuclease ABC, C subunit [Prevotella denticola CRIS 18C-A] Length = 610 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 165/622 (26%), Positives = 308/622 (49%), Gaps = 50/622 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 MPE PG YQ D ++YVGKA NL++R+ SY H + ++S+I++I ++V Sbjct: 19 NMPEKPGTYQFYDTEHTIIYVGKAKNLKRRVSSYFHKEVDRFKTKVLVSKIHDISYSVVN 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALL+E +IK+ KP++N+LL+D K++P I +T+ P ++K R+ + G+++GP Sbjct: 79 TEEDALLIENQLIKQYKPKYNVLLKDGKTYPSICVTN-EYFPRIFKTRNINKRYGTFYGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + ++ ++ +++ + R+C + + + + +PCL + + C PC + S E Sbjct: 138 YSHISSMYAVLDIIKKVYKPRTCRFPITKEGIEQRKYKPCLEYHLHNCGAPCIDKQSYED 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y E + +A++ L G ++ + + M + + +E A + + R AL + ++ + Sbjct: 198 YQEAIRQAREILKGNTREVQNLLKQQMQKYAEELRFEEAEMCKQRYMALDNFAAKSEIVS 257 Query: 240 NRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + + ++ + A I G + T+ K + T+ ++L+ + + Sbjct: 258 HTITDVDVFTIIDDDTRKNAFINYIHVKNGAINQSFTYEYKRKLDETDEELLNEAIPEIR 317 Query: 295 TD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 + I++ E + +P++G+K ++E + +NA + Sbjct: 318 ERFNSTAKEIIVPFELDFK-----------IKDASFFIPQRGDKHHLLELSEMNAKQYKF 366 Query: 354 QKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 +L E ++++ +K L +P +IE +DNS+I G AV +V Sbjct: 367 DRLKQAEKLNPEQKQTRLMRELQEKLKLTKLPYQIECFDNSNISGTDAVAGCIVYKGMKP 426 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 + YRK+N+ V DD A M+ V+ RR+S++ + PD++ Sbjct: 427 SRKDYRKYNIKT--VTGPDDYASMQEVVRRRYSRMQEEG--------------TPLPDLI 470 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPIL 527 I DGGKGQ+ + V++ + I I +AK + E F + + L+++ + Sbjct: 471 ITDGGKGQMEVVREVIED-ELHLSIPIAGLAKDDRHRT-NELLFGFPQQTIALDVKGELF 528 Query: 528 YFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586 + +++DE HRFAIT HR +R K +S LD+I GIG + L++ TVK I S Sbjct: 529 KVLTQIQDEVHRFAITFHRNKRSKHQLHSELDDIKGIGMKTREALMKQLRTVKRIKESDI 588 Query: 587 ETLASIEGISKKIACKIYNHFH 608 +TL I G SK A IYN+FH Sbjct: 589 QTLTGIIGASK--ATIIYNYFH 608 >gi|327312872|ref|YP_004328309.1| excinuclease ABC subunit C [Prevotella denticola F0289] gi|326944775|gb|AEA20660.1| excinuclease ABC, C subunit [Prevotella denticola F0289] Length = 610 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 166/622 (26%), Positives = 307/622 (49%), Gaps = 50/622 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 MPE PG YQ D ++YVGKA NL++R+ SY H + ++S+I++I ++V Sbjct: 19 NMPEKPGTYQFYDTEHTIIYVGKAKNLKRRVSSYFHKEVDRFKTKVLVSKIHDISYSVVN 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALL+E +IK+ KP++N+LL+D K++P I +T+ P ++K R+ + G+++GP Sbjct: 79 TEEDALLIENQLIKQYKPKYNVLLKDGKTYPSICVTN-EYFPRIFKTRNINKRYGTFYGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + ++ ++ +++ + R+C + + + + +PCL + + C PC + S E Sbjct: 138 YSHISSMYAILDIIKKVYKPRTCRFPITKEGIEQRKYKPCLEYHLHNCGAPCIDKQSYED 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y E + +A++ L G ++ + + M + + +E A I + R AL + + + Sbjct: 198 YQEAIRQAREILKGNTREVQNLLKQQMQKYAEELRFEEAEICKQRYMALDNFAAKSKIVS 257 Query: 240 NRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + + ++ + A I G + T+ K + T+ ++L+ + + Sbjct: 258 HTITDVDVFTIIDDDTRKNAFINYIHVKNGAINQSFTYEYKRKLDETDEELLNEAIPEIR 317 Query: 295 TD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 + I++ E + +P++G+K ++E + +NA + Sbjct: 318 ERFNSTAKEIIVPFELDFK-----------IKDASFFIPQRGDKHHLLELSEMNAKQYKF 366 Query: 354 QKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 +L E ++++ +K L +P +IE +DNS+I G AV +V Sbjct: 367 DRLKQAEKLNPEQKQTRLMRELQEKLKLTKLPYQIECFDNSNISGTDAVAGCIVYKGMKP 426 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 + YRK+N+ V DD A M+ V+ RR+S++ + PD++ Sbjct: 427 SRKDYRKYNIKT--VTGPDDYASMQEVVRRRYSRMQEEG--------------TPLPDLI 470 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPIL 527 I DGGKGQ+ + V++ + I I +AK + E F + + L+++ + Sbjct: 471 ITDGGKGQMEVVREVIED-ELHLSIPIAGLAKDDRHRT-NELLFGFPQQTIALDVKGELF 528 Query: 528 YFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586 + +++DE HRFAIT HR +R K +S LD+I GIG + L++ TVK I S Sbjct: 529 KVLTQIQDEVHRFAITFHRNKRSKHQLHSELDDIKGIGTKTREALMKQLRTVKRIKESDI 588 Query: 587 ETLASIEGISKKIACKIYNHFH 608 +TL I G SK A IYN+FH Sbjct: 589 QTLTGIIGASK--ATIIYNYFH 608 >gi|145629081|ref|ZP_01784880.1| excinuclease ABC subunit C [Haemophilus influenzae 22.1-21] gi|144978584|gb|EDJ88307.1| excinuclease ABC subunit C [Haemophilus influenzae 22.1-21] Length = 553 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 193/572 (33%), Positives = 312/572 (54%), Gaps = 32/572 (5%) Query: 52 ISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKH 111 ++ I++I T+T +E EALLLE N IK +PR+N+LLRDDKS+P+IL+T K + P + + Sbjct: 1 MASIHHIDTTLTSSETEALLLEHNFIKLYQPRYNVLLRDDKSYPFILLT-KERHPRITSY 59 Query: 112 RDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPC 171 R S G YFGP+ AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCS PC Sbjct: 60 RGSKKFTGEYFGPYPHAGAVRETLSLLQKLFPVRQCENSVYSNRSRPCLQYQIGRCSAPC 119 Query: 172 TG-EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH 230 +S E+Y + V A+ FL G + + + + M QA+ D+E A +RD++ A+ Sbjct: 120 VQGYVSDEEYNQQVELARLFLQGKDQQVLDYLIGKMEQASRNLDFEQAARYRDQIQAVRS 179 Query: 231 IQNHNDS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILS 287 + + MD S+ + LAC+Q F G+ G ++F K + + +++ Sbjct: 180 VIEKQFVSNERLDDMDIMSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTE 239 Query: 288 YFLRQFY----TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQ 343 F+ QFY + P +I++ + E S LE +Q G KV I +G+K K ++ Sbjct: 240 TFVGQFYLQGHQGRSIPNSIIVDRQLAEKSELEQLLSEQAGRKVTIQESVKGDKSKYLQL 299 Query: 344 ALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVG 403 A +NA + +L + LP I R+E +D SH MG V VV Sbjct: 300 AQVNAKAALNVQLKQSSRMSERYQALCDLLNLPKIK-RMECFDISHTMGNQTVASCVVFN 358 Query: 404 ENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSW 463 + G +K+ YR+FN+ + DD A M VL++R+ + ++ ++ Sbjct: 359 QEGPLKSDYRRFNIEG--ITGGDDYAAMEQVLQKRYERDLEEDK---------------I 401 Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVE---NRITIISIAKGPKRSAGMEKFFV-KKGEALV 519 PD++ +DGGKGQL+ A V + L V+ NR +I +AKG R AG E + K+ + Sbjct: 402 PDIIFIDGGKGQLNRALNVFQHLQVKWDKNRPHLIGVAKGVDRRAGQEVLIISKQDREIH 461 Query: 520 LNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTV 578 L L+ IQ +RDE+H AI+ HRK+R+KA S L+ I G+G R++ LL+ G + Sbjct: 462 LPDDSLALHLIQHIRDESHNHAISGHRKKRQKAFTQSGLETIEGVGAKRRQALLKYLGGL 521 Query: 579 KMISRSSPETLASIEGISKKIACKIYNHFHKN 610 + + +++ + +AS+ GIS K+A +I+ + Sbjct: 522 QGVKKATLDEIASVPGISPKLAERIFETLKND 553 >gi|304413479|ref|ZP_07394952.1| endonuclease subunit of excinuclease UvrABC [Candidatus Regiella insecticola LSR1] gi|304284322|gb|EFL92715.1| endonuclease subunit of excinuclease UvrABC [Candidatus Regiella insecticola LSR1] Length = 590 Score = 438 bits (1127), Expect = e-120, Method: Composition-based stats. Identities = 203/607 (33%), Positives = 313/607 (51%), Gaps = 33/607 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D G V+YVGKA NL+KR+ Y + + ++ I I T+T TE EALLLE Sbjct: 1 MYDAEGAVIYVGKAKNLKKRLTHYF-GIQNNLKTKSLVKNIVQIDVTITHTETEALLLEH 59 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALY-KHRDSSTIQGSYFGPFASVDAVEK 133 N IK +PR+N+LLRDDKS+P+ + + T +G YFGPF AV + Sbjct: 60 NYIKLHQPRYNVLLRDDKSYPFYFF-LVPIFTRVSRYTVVACTKKGEYFGPFPDSYAVRE 118 Query: 134 TINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLS 192 T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y + ++ + FLS Sbjct: 119 TLALLQKLFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVTGLVSEEEYQQQINYVRLFLS 178 Query: 193 GGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--DCFSLYHN 250 G + + + + M +A+ +E A RD++ A+ + + D + N Sbjct: 179 GKDQQVLKNLISRMEKASHLLHFEEAAKLRDQIQAIRRVTEKQFVSGDDENLDVIGVSFN 238 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLS 306 LACI F G+ G+ ++F S + +I+ F+ QFY + PE Sbjct: 239 TGLACIHVLFIRQGKILGSRSYFPHIPSGTELNEIVQTFIGQFYLQGNQSRTLPEEFYWI 298 Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366 E LL S + G K++I +G + + ++ A NA + +LS + Q + Sbjct: 299 FHLAEKELLSASLSELNGRKIQIQTRPRGARARYLKLAATNAAAALKTRLSQRSTIQQRM 358 Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426 K+ K L R+E +D SH+MG V VV NG ++++YR++++ N +K D Sbjct: 359 KELAKVLKLA-SINRLECFDVSHLMGEQTVAACVVFDSNGPLRSEYRRYHI--NGIKPGD 415 Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486 D A + VL RR+ + + PDV+ +DGGKGQL+ A V L Sbjct: 416 DYAAISQVLMRRYDKAVDENN---------------IPDVIFIDGGKGQLAQAVNVFSSL 460 Query: 487 NV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 NV + + +ISIAKG R G+E F+ +G+ L P L+ IQ +R++AH AI Sbjct: 461 NVSWNKQKPLLISIAKGSDRKEGLETLFLSTRGKGDSLPSDSPALHLIQHIRNDAHNHAI 520 Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HRKRR S L+ I GIG R+++LL+ G ++ + +S E +A I IS+ +A Sbjct: 521 TGHRKRRSTVKMASVLEMIEGIGTKRRQMLLKHMGGLQPLLNASIEEIAKIPSISQTLAK 580 Query: 602 KIYNHFH 608 +I+N Sbjct: 581 RIFNTLK 587 >gi|302342099|ref|YP_003806628.1| excinuclease ABC, C subunit [Desulfarculus baarsii DSM 2075] gi|301638712|gb|ADK84034.1| excinuclease ABC, C subunit [Desulfarculus baarsii DSM 2075] Length = 636 Score = 438 bits (1127), Expect = e-120, Method: Composition-based stats. Identities = 200/610 (32%), Positives = 298/610 (48%), Gaps = 32/610 (5%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH----THRITHMISQINNIRFTV 62 P+ PG Y M D AG+V+YVGKA L+ R+ SY T+++ M +++ + F V Sbjct: 40 PDNPGCYLMKDAAGQVIYVGKAKRLKARLGSYTRPPASHTYYTNKVEAMKAKVAAVEFVV 99 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGSY 121 T ++ EA+LLE +IKR +PR+N+ LRDDKS+PY + P L R + Y Sbjct: 100 TASDKEAVLLEHTLIKRHRPRYNVELRDDKSYPYFRLALADDFPRLSLVRRPNPADGARY 159 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPF S A ++T+ LQR F LR CAD+ ++R RPCL F+ RC GPC G I E Y Sbjct: 160 FGPFDSAGAAKQTLRMLQRIFPLRRCADAALKNRVRPCLDFETGRCLGPCVGAIDREGYQ 219 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + + +F GG L ++ M A +E +E A RDRL AL Sbjct: 220 QLARQVLEFFGGGGRRLAAEMEARMLAAAAEERFEDAARLRDRLRALQSTLERQQVSLTD 279 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 ++D +L+ + + G+ + F ++++ + A+++ L Y P Sbjct: 280 GSQLDAVALHDAEGALRLAVLKVRLGRVEDSRVFEFESEA-LSPAEVMGQALLSLYATAP 338 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P ILLS EE LL ++ G V++ P++G+KR ++E A+INA + + + Sbjct: 339 PPPLILLSHLPEEPELLAEVLAERAGRSVELRRPRRGDKRGLLELAMINAGQ---PRAAQ 395 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + L +K L P+R+E D SH+ G V + + K YR++ L Sbjct: 396 DDDSGPALATLARKLNLAGPPRRMECVDISHLGGRLTVASVAAFEDGRPRKAGYRRYKLL 455 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + DD A M LERR S PD++I+DGGKGQL+ Sbjct: 456 GQEG-APDDYASMAQALERRLS------------------GDDPPPDLLIVDGGKGQLAV 496 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A VL +L + +IAKG F + L L RD L + RLRDEAH Sbjct: 497 AVDVLTRLRPAQAPALAAIAKGQAPGEPDRLFAPGRKNPLNLAARDRALLLVMRLRDEAH 556 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFA+ H+ R KA S LDEI G+GP RK+ LL +FG++ + R+S + G+ + Sbjct: 557 RFAVEYHKLLRSKALKRSILDEIPGVGPGRKKKLLTAFGSLAALKRASAREMVEQAGLDR 616 Query: 598 KIACKIYNHF 607 A ++ Sbjct: 617 PTAGRVEAFL 626 >gi|199598210|ref|ZP_03211632.1| excinuclease ABC subunit C [Lactobacillus rhamnosus HN001] gi|258508353|ref|YP_003171104.1| excinuclease ABC subunit C [Lactobacillus rhamnosus GG] gi|258539562|ref|YP_003174061.1| excinuclease ABC subunit C [Lactobacillus rhamnosus Lc 705] gi|199590971|gb|EDY99055.1| excinuclease ABC subunit C [Lactobacillus rhamnosus HN001] gi|257148280|emb|CAR87253.1| Excinuclease ABC subunit C, UvrABC system [Lactobacillus rhamnosus GG] gi|257151238|emb|CAR90210.1| Excinuclease ABC subunit C, UvrABC system [Lactobacillus rhamnosus Lc 705] gi|259649667|dbj|BAI41829.1| excinuclease ABC subunit C [Lactobacillus rhamnosus GG] Length = 602 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 167/619 (26%), Positives = 284/619 (45%), Gaps = 42/619 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG YQM DI G+++YVGKA NL+ R++SY ++H ++ M++Q+ + + VT T Sbjct: 13 LPDLPGSYQMKDINGKIIYVGKAKNLKNRVRSYF-KSSHDGKVAAMVAQVADFDYIVTST 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 EA LLE +I++ +P +NI L+ +PYI IT+ + P + G YFGP+ Sbjct: 72 NKEAFLLEITLIQKYQPYYNIKLKKGTGYPYIKITN-ERDPKIEITGTIRKDGGYYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A ++T++ +Q+ + LR C RPCL + + +C G C + ++Y + + Sbjct: 131 PNVYAAQETMHFIQKVYPLRRCNGYQ----GRPCLYYHMGQCLGACFRTVPEKEYTDQIA 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 K+FL+G K + M +A +E A RD+L + I Sbjct: 187 RIKRFLNGNVSKAKASLTAKMERAAKNLQFERAAEIRDQLYYIEQTVEKQKIISTDNTTR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ Y +K IQ F + + + + + P Sbjct: 247 DLFNFYMDKGWISIQVFFIRQARLMKRESRLFPVVNTAKEEFESFILQFYSRKNNVKPRE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR----SHTQKLST 358 +L+ + L +I +V + P++GEKR+++ A N+ Sbjct: 307 VLVPAGLDNKVLADIL-------EVPVRTPQRGEKRELMALAAKNSKIKLEDKFRLMELD 359 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + +K+ LP +E +D+SHI G V MV + KN YRK+ L Sbjct: 360 NRTTVGAMKELMAALKLPMG-HVVEAFDHSHIQGADPVSAMVQFVDGQPAKNNYRKYKLD 418 Query: 419 PNDVKTQDDCAMM-RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + D A R V+ RR+++L+K L PD++++DGG+ +++ Sbjct: 419 ADKTHNGADEAANTREVIRRRYTRLLKEHAAL--------------PDLILMDGGEIEMN 464 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 AA+ VL + + I + + K K F E + L+ + Y ++R++DE Sbjct: 465 AAKDVL-ENELNLDIPVAGMVKNNKHKTAA-LLFGHADEMINLDPKSQGFYLLERIQDEV 522 Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K + S L+ I G+GP + LL+ F T+ I + E + + GIS Sbjct: 523 HRFAITFHRQLHAKNSLASRLEGIKGVGPKTRLKLLRKFKTITKIKEAPLEDIQEL-GIS 581 Query: 597 KKIACKIYNHFHKNTSHTP 615 K++A + TP Sbjct: 582 KRVAQALKLSL--TADPTP 598 >gi|55379620|ref|YP_137470.1| excinuclease ABC subunit C [Haloarcula marismortui ATCC 43049] gi|73920300|sp|Q5UY89|UVRC_HALMA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|55232345|gb|AAV47764.1| UvrABC system protein C [Haloarcula marismortui ATCC 43049] Length = 581 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 182/613 (29%), Positives = 289/613 (47%), Gaps = 52/613 (8%) Query: 5 QMPECPGVYQM---LDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 +P PGVY D RVLYVGKA +L+ R++SY ++ + RI M+ + I F Sbjct: 12 SLPREPGVYLFEQGRDDKRRVLYVGKAVDLRDRVRSY--ADPRSERIAKMVERAETIDFA 69 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT TE +ALLLEAN+IKR +P +N+ L+DDKS+P + +T H +P + RD + Sbjct: 70 VTDTETQALLLEANLIKRHRPPYNVRLKDDKSYPLVQLT-DHPVPRIEVTRDP-ADGATV 127 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GPF VE + +L+ + LR C+D + +R RPCL +++ C+ PCTGEI Y Sbjct: 128 YGPFTDKGRVETVVKALREAYGLRGCSDHKYSNRDRPCLDYEMGICTAPCTGEIGEADYA 187 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E ++ G L + + R M A +++E A RD+L A+ + D+ Sbjct: 188 EDAEAVTRYFEGETGVLADPLRREMEAAAQNQEFERAANLRDKLGAVEALHGEGDTAVSD 247 Query: 239 ---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 Y D A + G+ L+ A + F+ Q+Y Sbjct: 248 SGGYQTTDVLGAAIEGERAIVARLHAEGGKLVERDRHTLEAPDGEGTAGVYRAFIPQYYA 307 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ P+ IL +E + + + V + VP G + +++ AL NA + Sbjct: 308 ERELPDRILCAEAPADPDIEAWLESEG----VTLGVPGAGREATLVDLALKNARQ----- 358 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L D P RIE +D SH G SAVG V + K+ YR+ Sbjct: 359 RGGTDDESGRLADALGIDH----PSRIEGFDVSHAQGRSAVGSNVTFVDETPEKSDYRRK 414 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 L DD A MR +L R ++ ++ ++ PD++++DGG GQ Sbjct: 415 KLTEQ----NDDYANMRELLRWRATRAVEGRDDRPD------------PDLLLIDGGDGQ 458 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 L AA+ L + + + I++AK E+ + N P L+ +QR+RD Sbjct: 459 LGAARDALAETGWD--VPAIALAKD-------EELVITPDRVYDWNDDAPQLHLLQRIRD 509 Query: 536 EAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 EAHRFA+ H+ R + + + LD++ GIGP ++ LL+ FG+V + +S E L +I+GI Sbjct: 510 EAHRFAVQYHQTLRDEVSTT-LDDVPGIGPETRKRLLRRFGSVDSVRAASDEELTAIDGI 568 Query: 596 SKKIACKIYNHFH 608 ++ A I Sbjct: 569 GEQTAETIRTRLQ 581 >gi|260591944|ref|ZP_05857402.1| excinuclease ABC subunit C [Prevotella veroralis F0319] gi|260536228|gb|EEX18845.1| excinuclease ABC subunit C [Prevotella veroralis F0319] Length = 610 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 168/625 (26%), Positives = 309/625 (49%), Gaps = 50/625 (8%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +PE PG YQ D ++YVGKA NL+ R+ SY + + ++S+I++I +TV Sbjct: 18 QSLPEKPGTYQYYDSEHTIIYVGKAKNLKSRVSSYFYKEVDRFKTKVLVSKIHDISYTVV 77 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE +ALL+E +IK+ KP++N+LL+D K++P I +T+ P ++K R + G+++G Sbjct: 78 NTEEDALLIENQLIKQYKPKYNVLLKDGKTYPSICVTN-EYFPRIFKTRTINKHSGTFYG 136 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFR-----HRTRPCLLFQIKRCSGPCTGEISSE 178 P++ + ++ + +++ + R+C + + + +PCL + + C PC + S E Sbjct: 137 PYSHIGSMYAILEIIKKLYKPRTCRYPITKEGIEQGKYKPCLEYHLHNCGAPCINKQSYE 196 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y E + +A++ L G N+++ + + M + + +E A + + R AL + N+ + Sbjct: 197 DYQEAIKQAQEILKGNTRNVQQMLKQKMQKYAEELKFEDAELCKQRYLALDNFAAKNEIV 256 Query: 239 YNRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 + ++ + A + G + T+ K + T+ ++L+ + + Sbjct: 257 SYTITDVDVFTIIDDDSRKNAFVNYIHVKNGAINQSFTYEYKRKLDETDEELLNLAILEI 316 Query: 294 YTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 K + I++ E + + +PK+G+K ++E + +NA + Sbjct: 317 RERFKSTAKEIIVPFELDFK-----------IKDAEFVIPKRGDKWHLLELSEMNAKQYK 365 Query: 353 TQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 +L E ++++ KK LP +P +IE +DNS+I G AV +V Sbjct: 366 FDRLKQMEKLNPEQKQTRLMRELQKKLKLPKLPYQIECFDNSNISGSDAVAGCIVYKGMK 425 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 K YRK+N+ V DD A M+ V+ RR+ ++ + PD+ Sbjct: 426 PSKKDYRKYNIKT--VVGPDDYASMQEVVRRRYIRMQEEG--------------SPLPDL 469 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526 +I DGGKGQ+ + V++ + I I +AK K E F + + L+++ + Sbjct: 470 IITDGGKGQMEVVREVIED-ELHLNIPIAGLAKNDKHRT-NELLFGFPQQVVALDVKSEL 527 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 + +++DE HR+AI+ HR +R K +S LD I GIGP K +LL+ +VK I + Sbjct: 528 FRVLTQIQDEVHRYAISFHRNQRSKHQLHSELDNIKGIGPKTKDMLLKKLKSVKNIKEAD 587 Query: 586 PETLASIEGISKKIACKIYNHFHKN 610 + L SI G SK A +YN+FH Sbjct: 588 RQILTSIIGASK--ASLVYNYFHAE 610 >gi|313115220|ref|ZP_07800703.1| excinuclease ABC subunit C [Faecalibacterium cf. prausnitzii KLE1255] gi|310622449|gb|EFQ05921.1| excinuclease ABC subunit C [Faecalibacterium cf. prausnitzii KLE1255] Length = 631 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 170/611 (27%), Positives = 287/611 (46%), Gaps = 15/611 (2%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVTC 64 +P PGVY + D ++Y+GKA L+ R+ Y H ++++ MI+ V Sbjct: 29 LPLLPGVYIIRDKTDTIIYIGKAKRLRIRVSQYFREGVPHDNKVSQMIAHAYAFDVIVCQ 88 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EAL+LEA+ IK P++NILL+DDK + YI +T K P L Y GP Sbjct: 89 SEFEALVLEASQIKAHTPKYNILLKDDKGYSYIKVT-KEPWPRLSFVLQKEEDDAEYIGP 147 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSEKYME 182 + S A + + F L C + + RPCL I +C C+G IS E Y + Sbjct: 148 YTSSFAARQMAETAMDAFLLPRCNKRFPQEIGKGRPCLNAHIGKCMAVCSGRISCENYNQ 207 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR- 241 V A + G ++ + + M +A+ + ++E+A + RD++AA++ + I + Sbjct: 208 AVKSAVHLIRYGKKDILKILNERMQEASDRLEFETAALLRDQIAAITKVSAGQKVIVDPD 267 Query: 242 --MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 MD +L + C F G+ FL D+ A + R + D+ Sbjct: 268 VEMDVVALAGTPDSVCAAVLRFRDGR-LTDKREFLFHDTSDIAAVREEFLPRYYLDDEQI 326 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P+ I + E ++ L+ + ++ G +V++ VP++G+K ++E A NA ++ Sbjct: 327 PKIIAVDELPPDSDALQQALNEKRGSEVQLYVPQRGDKAHLVEMAHTNAVERLARESGRY 386 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + +L + + L P+ IE YD S+ S+V MV + K YRKF + Sbjct: 387 AREEKLLDELAQVLGLAKPPRAIESYDISNWGDGSSVCGMVTFKDGKPYKAGYRKFKMKT 446 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 V DD A + + RR ++ K E L + F PD++++DGG+GQ+SAA Sbjct: 447 --VAGTDDYASLAETVSRRAAEYEKYAE-LAKKGEPCSNWFGQKPDLLLMDGGRGQVSAA 503 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 + L + + + + + K G + +NM FI ++DE HR Sbjct: 504 KDALAGTALAD-VPLYGMVKDDHHRTRA--IVDSNGREIAINMNRGTFTFITAIQDETHR 560 Query: 540 FAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FA +++ K K+ S L EI GIGP + L+ F +V + ++P+ L + G+ K+ Sbjct: 561 FANAYRKQQMKQKSYSSTLTEIPGIGPKTAKALMAQFKSVGAVKEATPDQLENTPGVGKQ 620 Query: 599 IACKIYNHFHK 609 A IY +FH+ Sbjct: 621 TAQIIYAYFHE 631 >gi|169335028|ref|ZP_02862221.1| hypothetical protein ANASTE_01434 [Anaerofustis stercorihominis DSM 17244] gi|169257766|gb|EDS71732.1| hypothetical protein ANASTE_01434 [Anaerofustis stercorihominis DSM 17244] Length = 622 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 175/622 (28%), Positives = 315/622 (50%), Gaps = 24/622 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 + +PE GVY M D G ++YVGKA L+ R+ Y N NHT ++ M+ I + + Sbjct: 12 KIKLLPENSGVYLMKDENGTIIYVGKAKVLKNRVTQYFRKNSNHTPKVLKMVENIADFEY 71 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T E+EAL+LE N+IK+ +P +NIL+RDDK++PYI IT K + P L+ R Sbjct: 72 IITNNEMEALILECNLIKKYRPYYNILMRDDKTYPYIKITIKDEYPKLFVTRKYINDGNK 131 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+A+ +K ++++ + + C + + CL + I +C G C G I ++ Sbjct: 132 YFGPYANATYAKKAVSTINELYPIAMCKKELKSGVKKGNVCLNYHIGQCLGVCQGNIDTK 191 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 Y ++ E L+G + + + MN + D+E+A RD++ A+ +++ + Sbjct: 192 LYNRYIKEIIDILNGKTSKIIQSLENKMNGYSENLDFENAGKVRDKIFAIRGLKSEQNVS 251 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + MD L +++AC+Q + G + LK +E +++L+ F++QFYT Sbjct: 252 NANADNMDILGLAMAEDMACVQVYALRDKKIVGRENYILKGQNEKDVSEVLAAFIKQFYT 311 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 + P P IL+ +E E+ ++ KV+I VP +GEK+K+++ A NA + Sbjct: 312 NTPFIPPLILVEKEFEDIDNIKDLLTNLKSKKVEIKVPVKGEKKKLLKLATDNAKLNLEN 371 Query: 355 KLSTEISH----QMILKDFTKKFAL-PHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 + E + +++ K + R E YD S+ G +VG MVV Sbjct: 372 IIGKEKQKALMEKKAVEEINKYANISKEGNFRYEAYDISNTSGVDSVGVMVVFDGAKRNY 431 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 YRKF + ++ +D M V+ RR ++ K + + +P+ F PDV+ + Sbjct: 432 KAYRKFKVKS--IEGPNDYGSMVEVVFRRLNRAQKELKQNDDNPR-----FLPLPDVIFV 484 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGG G ++A + V+ + I ++ + K K +++ EA + + Sbjct: 485 DGGIGHVNAVKNVVDTFDF--NIKVLGLGKNNKHK--LKEVVKNNEEARNIRDFEFAGKL 540 Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 + + +E HRFAI H+ R K+ + L+EI GIG ++ R LL+ F ++ + +S E Sbjct: 541 LNDISEEVHRFAIDYHKNLRSKSFLKTTLEEIEGIGKVKCRNLLKHFKNMEELKNASIEE 600 Query: 589 LASIEGISKKIACKIYNHFHKN 610 + ++G+++++A K+ +HF + Sbjct: 601 IVKVDGMNEELAKKVKDHFKND 622 >gi|325283193|ref|YP_004255734.1| UvrABC system protein C [Deinococcus proteolyticus MRP] gi|324315002|gb|ADY26117.1| UvrABC system protein C [Deinococcus proteolyticus MRP] Length = 609 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 168/621 (27%), Positives = 289/621 (46%), Gaps = 41/621 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P GVY G +Y+GKA NL+ R+ + + + + T + + + F T Sbjct: 9 LPVTSGVYIFR-KGGTPIYIGKANNLRGRVMQHFKAGGKSGKFTAL---ADELEFITTKG 64 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 EVEAL+LEAN+IK+ +P +N+LL+D K +P++ +T++ P L R + SY+GP+ Sbjct: 65 EVEALVLEANLIKQHRPHYNVLLKDGKHYPFLKLTNEE-FPMLIVTRKVLSDGASYYGPY 123 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 AV + + + F LR + + + RPCL + + RC PC Y + V Sbjct: 124 PDASAVRRVKHLIDTMFPLRKNSGLPMKLKPRPCLNYHMGRCLAPCIQAADPLAYAQVVD 183 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRL----AALSHIQNHNDSIYNR 241 + K L G + ++ M +A L++D+E A RDR+ + Q+ S Sbjct: 184 DVKALLEGRAAPVLRRLREEMKEAALRQDFEMAARLRDRVSAVEKLFGNEQHAFISEEAD 243 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-CP 300 +D + A +Q G+ FL D ST +ILS F++ +YT P Sbjct: 244 LDFLGVAQAGEYAMVQLFRMRGGRVVSRDKRFLTGDEASTPGEILSAFMQDYYTQATHLP 303 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS--T 358 +LL E E+T+L ++ G++V + +P++G+K ++E A NA +L+ Sbjct: 304 PLVLLPAELEDTALWAEFLSERAGHRVSVRLPRRGDKVDLVEMAQRNAGHGLESELAVLE 363 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 L + AL P RIE YDNS++ G V M+V+ K++YR+F + Sbjct: 364 RRGDHPGLDALREVLALADRPWRIEGYDNSNLFGTHIVSGMIVLEGGRARKSEYRRFKVR 423 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + DD A MR + RRF+ + ++ L GG+GQ++A Sbjct: 424 G--LDHPDDYAAMRQTVYRRFTGSLSDKLPLPDLLLID--------------GGRGQVNA 467 Query: 479 AQGVLKKLNVENRITIISIAKGPKRS-----AGMEKFFV-----KKGEALVLNMRDPILY 528 A LK+ V ++ ++ +AK + G + + G+ L+L P L Sbjct: 468 ALDALKEAGV--QVPVVGLAKREEIIVLPSPYGAQWWLTGGTVLGDGKELILPHTHPALR 525 Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 + RDE H +A++ +RK R + S D++ GIG R+ LL+ F +++ + + Sbjct: 526 VLIHARDEVHHYAVSYNRKLRGQAMTASIFDDLPGIGQKRRDALLEHFTSLEELRAADVA 585 Query: 588 TLASIEGISKKIACKIYNHFH 608 +A++ G+ K A + Sbjct: 586 HIAAVPGMGMKAAQAVKAFLQ 606 >gi|241895539|ref|ZP_04782835.1| excinuclease ABC subunit C [Weissella paramesenteroides ATCC 33313] gi|241871117|gb|EER74868.1| excinuclease ABC subunit C [Weissella paramesenteroides ATCC 33313] Length = 597 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 166/606 (27%), Positives = 286/606 (47%), Gaps = 41/606 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG YQM D G+++YVGKA NL+ R++SY + HT + +++ I + F VT + Sbjct: 13 LPELPGSYQMKDKDGKIIYVGKAKNLKNRVRSYF-KSEHTGKTEQLVANIADFDFIVTSS 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE +I++ +P +NI L+ +PYI IT+ + P + + + G YFGP+ Sbjct: 72 EKESLLLEITLIQKYQPYYNIRLKRGTGYPYIKITN-ERDPQILLANEVADDGGHYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A ++T++ LQ+ + LR C RPCL I +C G C E+ E Y E + Sbjct: 131 PNVYAAQETLHFLQKVYPLRRCNGYQ----GRPCLYANIGQCLGACYKEVPEEVYNEQIK 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 + K+FL G + + + + M +A YE A RD+L + I Sbjct: 187 KIKRFLDGDTKVVTKMLQKKMAEAAANLAYERAADLRDQLKFIEATVEKQKIISRDGTPR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ Y N+ +Q F + + + P+ Sbjct: 247 DIFNFYMNRGWLSVQVFFIRQARLMKREKRLFAIVGSAQEELTSFILQFYNRQNAVLPKE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358 IL+ ++ ++ ++ + P++GEKR ++E A NA Sbjct: 307 ILVPAGVDKEAISQVLNI-------PVRTPQRGEKRALLELAGKNAKIVLDEKFRLLEMN 359 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ +P RIE +D+SH+ G V MVV + KN+YR Sbjct: 360 ESKTSGAMQEIADALNIP-EIHRIEAFDHSHLQGSDMVSAMVVFEDGVPNKNKYR--KYK 416 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ D+ A V+ RR+++L+K PD++++DGG QL+A Sbjct: 417 NKTVENADERAETMEVIRRRYTRLLKEH--------------SEMPDLILMDGGVIQLNA 462 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ V++ + I + ++ K + + + + L+ Y +QR++DE H Sbjct: 463 AREVIED-ELGLSIPVAAMVKNDQHKTA-DLLKEEGAAHVHLDPNSQGFYLLQRIQDEVH 520 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RF IT HR+ K++ S LD I G+GP ++ LL ++G++ ++ +S + L + GIS+ Sbjct: 521 RFVITFHRQLHSKSSLGSRLDGIAGVGPKTRQKLLTTYGSMNKMASASLDDLKKL-GISE 579 Query: 598 KIACKI 603 ++A I Sbjct: 580 RVANNI 585 >gi|170017685|ref|YP_001728604.1| excinuclease ABC subunit C [Leuconostoc citreum KM20] gi|169804542|gb|ACA83160.1| Excinuclease ABC, C subunit [Leuconostoc citreum KM20] Length = 574 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 166/602 (27%), Positives = 286/602 (47%), Gaps = 40/602 (6%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D G+++YVGKA NL+ R++SY +H+ + ++ I + + VT ++ EA LLE Sbjct: 1 MKDKNGKIIYVGKAKNLKNRVRSYF-KQDHSGKTAELVQNITDFDYIVTNSDKEAFLLEN 59 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 +IK+ KP +NI L+ +PYI IT K + P + + G YFGP+ +V A ++T Sbjct: 60 ELIKKYKPYYNIRLKYGTGYPYIKIT-KERDPKMALVNEVKRDGGFYFGPYPNVYAAQET 118 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194 + L++ + LR C RPCL + + +C GPC ++ + Y + + K FL G Sbjct: 119 LRFLEKNYPLRRCNGYQ----GRPCLYYNMGQCLGPCWHDVPQKAYDDQIARIKHFLDGN 174 Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMDCFSLYHNK 251 ++K+ IA+ M A ++E A RD+L + D F+ Y +K Sbjct: 175 TASVKKAIAQKMQIAAETLEFERAADLRDQLKYIDETVESQRVLSKDTTPRDLFNYYLDK 234 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEE 311 ++ F + + + + P +L+ + + Sbjct: 235 GWMTVEVFFLRQARLIRQYKQTFSVVGAADEEMMNFMQQFYAQRNIQKPNEVLVPKGIDT 294 Query: 312 TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLSTEISHQMILK 367 +L E+ + VP +GEKR +++ A NA + E ++ Sbjct: 295 NALSEMLQI-------PVRVPVRGEKRDLLDLAQKNARIALEEKFRLMQLNEKKTTGAMR 347 Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427 + T +P RIE +D+SH G V MVV + K+ YRK+ + V D+ Sbjct: 348 EITHALNIPMGK-RIEAFDHSHTQGVEIVSAMVVFDDGVPNKDLYRKYKIKS--VSHADE 404 Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487 + + V+ RR+S+++K PD++++DGG+ QL AA+ VL+ Sbjct: 405 WSETQEVIRRRYSRILKEG--------------GEMPDLILMDGGEIQLHAAKEVLEDEL 450 Query: 488 VENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRK 547 + I ++ K K + + GE +VL+ + + IQR+++E HRFAI HR+ Sbjct: 451 GLTSLPIAAMVKNDKHKTA-DLIDGRTGEVVVLSKQSEGFFLIQRVQEEVHRFAINFHRQ 509 Query: 548 RRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 R K + S LD I+G+GP ++ LL+ FG++ I+ +S E L +I GI++K+A I+ Sbjct: 510 LRSKNSLASRLDMIDGVGPKTRQKLLREFGSLPKIAGASIEALQAI-GINEKLARVIHMS 568 Query: 607 FH 608 Sbjct: 569 LK 570 >gi|116491096|ref|YP_810640.1| excinuclease ABC subunit C [Oenococcus oeni PSU-1] gi|118586932|ref|ZP_01544365.1| excinuclease ABC, C subunit [Oenococcus oeni ATCC BAA-1163] gi|290890599|ref|ZP_06553670.1| hypothetical protein AWRIB429_1060 [Oenococcus oeni AWRIB429] gi|122276722|sp|Q04EZ7|UVRC_OENOB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|116091821|gb|ABJ56975.1| Excinuclease ABC subunit C [Oenococcus oeni PSU-1] gi|118432659|gb|EAV39392.1| excinuclease ABC, C subunit [Oenococcus oeni ATCC BAA-1163] gi|290479727|gb|EFD88380.1| hypothetical protein AWRIB429_1060 [Oenococcus oeni AWRIB429] Length = 607 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 181/609 (29%), Positives = 298/609 (48%), Gaps = 47/609 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG YQM D G+++YVGKA NL+ R++SY HT + +++ I++ F VT + Sbjct: 13 LPSQPGSYQMKDKNGKIIYVGKAKNLKNRVRSYF-KAEHTGKTAELVANIHDFEFIVTNS 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 + EA LLE +IKR +P FNI L+ S+PYI IT+ + P L G+YFGP+ Sbjct: 72 DKEAFLLENTLIKRYRPYFNIRLKFSGSYPYIEITN-ERDPRLILANTLKHDHGTYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A +T++ L+ T+ LR C RPCL + + +C G C + E+Y + + Sbjct: 131 PNVYAASETLHFLEMTYPLRRCNGYQ----GRPCLYYSMGQCLGACWRTVPQEEYQKNID 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 +FL+G I + M +A+ +YE A RDRL + + N Sbjct: 187 AITRFLNGETGKAISDIKKKMKRASDSTEYELAADFRDRLKFIDQTVESQRVLQNDHTPR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC--P 300 D F+ Y +K I+ F G+ L + + L +++QFY+ K P Sbjct: 247 DLFNFYMDKGWMTIEIFFLRQGRLLRQQKETL--ALADSVKEELESYIQQFYSQKNAQKP 304 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR----SHTQKL 356 + +L+ + + L E ++ + P +GEKR +++ A NA Sbjct: 305 KEVLVPKNVDTKLLAE-------TLEIPVRTPVRGEKRDLLKLAAKNARITLEDKFRLME 357 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 E +K+ T +PH R E +D+S+ G + V +VV + KN YR++ Sbjct: 358 LNEEKTTGAMKEITDALKIPHG-YRFEAFDHSNTQGSNYVSALVVFEDGLPNKNLYRRYK 416 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 L QD+ V+ RR+++L + +PD++++DGG+ QL Sbjct: 417 LRTP--TGQDEAKATFEVITRRYTRLRDEGQ--------------MYPDLILMDGGEIQL 460 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 +A+ L+KL+++ I + ++ K K +GE L L+ Y +QR++DE Sbjct: 461 HSAEAALRKLDID--IPVAAMVKNDKHQTAD--LLNSRGENLFLDPHSQGFYLLQRIQDE 516 Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 HRF IT HR+ R K S LDEI GIGP + L++ FG++ I+ +S E + ++ GI Sbjct: 517 VHRFVITFHRQLRTKTNLSSRLDEIAGIGPKSRVKLMRRFGSLPKIADASIEDIEAL-GI 575 Query: 596 SKKIACKIY 604 +K+A + Sbjct: 576 GEKVATLVK 584 >gi|256829175|ref|YP_003157903.1| excinuclease ABC subunit C [Desulfomicrobium baculatum DSM 4028] gi|256578351|gb|ACU89487.1| excinuclease ABC, C subunit [Desulfomicrobium baculatum DSM 4028] Length = 605 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 178/604 (29%), Positives = 280/604 (46%), Gaps = 35/604 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFTVT 63 P CPGVY M + GR++YVGKA +L++R+ SY + ++ M++++ I F T Sbjct: 9 SFPTCPGVYLMKNATGRIIYVGKAKHLRRRLASYFQPEHRLAPKVRVMMTRVETIDFLCT 68 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEA++IK+ +P++NI+LRDDK + ++ H PAL R YFG Sbjct: 69 STEKEALLLEASLIKKHRPKYNIVLRDDKQYVLFCLSRNHPFPALRLTRKVLRDGSVYFG 128 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PF S + +T + R F LR C D+VF +RTRPCL + I RC GPC +S E+Y + Sbjct: 129 PFTSALSARETKRVIDRLFPLRKCRDTVFSNRTRPCLQYHIGRCLGPCCLPVSEEEYRQV 188 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM- 242 V + FLSG + L + M + + D+E A RD + AL ++ + Sbjct: 189 VRRVELFLSGKSDELMAGLHDQMMRLSDALDFEGAARLRDSIRALRETVERQAAVLSDGR 248 Query: 243 --DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQI---LSYFLRQFYTDK 297 D ++ ++N A + F G+ F+ + T FL Q+Y + Sbjct: 249 DLDVIGVHGHENGAALAIVFVRQGRIIDGQAFWFADAAVDTPEAEAGLTDSFLMQYYNAE 308 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 +++ + LE + G + + + ++R++++ A NA Sbjct: 309 RFIPARIITAFGSQDPALEDALADMRGGRASVAKARGDQERRLVDIATANAK----AHAL 364 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + + + +RIE D SHI G MVV + K+ YR ++ Sbjct: 365 RQRRTIPTRAELAGVLGVEGEVERIECVDASHIQGEGMRVGMVVFVDGREEKSAYRVYSF 424 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + D A+ R S P WPD++++DGGKGQL Sbjct: 425 PELEGTADDYLALASFAARR-------------------AKSGPPWPDLLLIDGGKGQLG 465 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGME---KFFVKKGEALVLNMRDPILYFIQRLR 534 A + + + + + + SIAKG R AG F + L L P L F+Q +R Sbjct: 466 AVERAMAENGLS-AVPLASIAKGVSRRAGELGDVIFRPGRKNPLNLRPGSPELLFLQHVR 524 Query: 535 DEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 D AHRF I+ R+ +R S LD + GIGP RLL F +V+ ++++ E LA++ Sbjct: 525 DTAHRFVISRLRRHKRAAQLSSDLDNLPGIGPKTARLLWDHFDSVQAMTQARIEDLAALP 584 Query: 594 GISK 597 G Sbjct: 585 GFGP 588 >gi|229552148|ref|ZP_04440873.1| excision endonuclease subunit UvrC [Lactobacillus rhamnosus LMS2-1] gi|229314450|gb|EEN80423.1| excision endonuclease subunit UvrC [Lactobacillus rhamnosus LMS2-1] Length = 614 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 165/611 (27%), Positives = 282/611 (46%), Gaps = 40/611 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG YQM DI G+++YVGKA NL+ R++SY ++H ++ M++Q+ + + VT T Sbjct: 25 LPDLPGSYQMKDINGKIIYVGKAKNLKNRVRSYF-KSSHDGKVAAMVAQVADFDYIVTST 83 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 EA LLE +I++ +P +NI L+ +PYI IT+ + P + G YFGP+ Sbjct: 84 NKEAFLLEITLIQKYQPYYNIKLKKGTGYPYIKITN-ERDPKIEITGTIRKDGGYYFGPY 142 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A ++T++ +Q+ + LR C RPCL + + +C G C + ++Y + + Sbjct: 143 PNVYAAQETMHFIQKVYPLRRCNGYQ----GRPCLYYHMGQCLGACFRTVPEKEYTDQIA 198 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 K+FL+G K + M +A +E A RD+L + I Sbjct: 199 RIKRFLNGNVSKAKASLTAKMERAAKNLQFERAAEIRDQLYYIEKTVEKQKIISTDNTTR 258 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ Y +K IQ F + + + + + P Sbjct: 259 DLFNFYMDKGWISIQVFFIRQARLMKRESRLFPVVNTAKEEFESFILQFYSRKNNVKPRE 318 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR----SHTQKLST 358 +L+ + L +I +V + P++GEKR+++ A N+ Sbjct: 319 VLVPAGLDNKVLADIL-------EVPVRTPQRGEKRELMALAAKNSKIKLEDKFRLMELD 371 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + +K+ LP +E +D+SHI G V MV + KN YRK+ L Sbjct: 372 NRTTVGAMKELMAALKLPMG-HVVEAFDHSHIQGADPVSAMVQFVDGQPAKNNYRKYKLD 430 Query: 419 PNDVKTQDDCAMM-RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + D A R V+ RR+++L+K L PD++++DGG+ +++ Sbjct: 431 ADKTHNGADEAANTREVIRRRYTRLLKEHAAL--------------PDLILMDGGEIEMN 476 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 AA+ VL + + I + + K K F E + L+ + Y ++R++DE Sbjct: 477 AAKDVL-ENELNLDIPVAGMVKNNKHKTAA-LLFGHADEMINLDPKSQGFYLLERIQDEV 534 Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT HR+ K + S L+ I G+GP + LL+ F T+ I + E + + GIS Sbjct: 535 HRFAITFHRQLHAKNSLASRLEGIKGVGPKTRLKLLRKFKTITKIKEAPLEDIQEL-GIS 593 Query: 597 KKIACKIYNHF 607 K++A + Sbjct: 594 KRVAQALKLSL 604 >gi|33240404|ref|NP_875346.1| excinuclease ABC subunit C [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|81664511|sp|Q7VBY8|UVRC_PROMA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|33237931|gb|AAP99998.1| Nuclease subunit of the excinuclease complex [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 640 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 193/627 (30%), Positives = 305/627 (48%), Gaps = 27/627 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFT 61 + +P+ PG Y M D ++Y+GK+ NL R+KSY N++ + + M+ Q++ I F Sbjct: 21 LDNIPKAPGCYLMKDNEDNIIYIGKSINLNSRVKSYFRRRNDNNPKNSLMLKQVSLIDFI 80 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST--IQG 119 VT E+EAL LE+N+IK +P +NILL+DDK +PY+ IT P + R + Sbjct: 81 VTDNELEALNLESNLIKSNQPHYNILLKDDKKYPYLCITWSEDYPRILIVRRRRNRADKD 140 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 Y+GP+ V ++ T+ +++ F LR +++ +T CL + I RC G C ISS Sbjct: 141 RYYGPYVDVTSLRNTLFLIKKIFPLRQRQRPLYKDKT--CLNYSIGRCPGVCQKIISSSD 198 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI- 238 Y + + + + G LK+ + M+ + + YE A+ +++L+ L+ Sbjct: 199 YRTVIKKVEMIIQGRTSELKKLLEEKMHIYSKEMKYEEALKIKNQLSGLNTFSQTQKITE 258 Query: 239 ---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D + N + IQ G+ F + + I + Sbjct: 259 PDSSINRDVIAHASNDSNTSIQLFQIRAGKLIARLAFTADSIKTNKENIIQKVIEEHYSQ 318 Query: 296 DKP--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 P P+ ILL + E+ ++ + G KV I +PK +K ++ NA T Sbjct: 319 LDPVVIPKEILLDNQIEKIEVISEWLSEMKGSKVNIKIPKISKKANMVSLVKKNAELELT 378 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + L++ + LP P+RIE YD SHI G AVG VV E K+ YR Sbjct: 379 KLSKGVEKANLALEELAELLDLPFKPRRIEGYDISHIQGSDAVGSQVVFVEGMPAKHHYR 438 Query: 414 KFNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFP--------SW 463 KF + +K DD + ++ RRFS+ K +E + Y + Sbjct: 439 KFIIKDETIKLGHSDDYLSIYELITRRFSRWSKYKEKGVNLSDIRNYKSSILDPSTLADF 498 Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMR 523 PD+V++DGGKGQL+ A L+KLN+ I + S+AK + + F + L N Sbjct: 499 PDLVMIDGGKGQLNIALKALEKLNLSEDIKLCSLAKKNE-----DIFIPGNNKPLKCNND 553 Query: 524 DPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMIS 582 D L ++RLRDEAHRFA+T HRKRR + L EI GIGP R + LL F +V+ I Sbjct: 554 DNGLLLLRRLRDEAHRFAVTFHRKRRTLGMRRTELTEIPGIGPKRIKALLLHFNSVQAIK 613 Query: 583 RSSPETLASIEGISKKIACKIYNHFHK 609 + E +AS G+ +++A I+N+F+K Sbjct: 614 MARKEEIASAPGVGRELAEHIWNYFNK 640 >gi|291518013|emb|CBK73234.1| excinuclease ABC, C subunit [Butyrivibrio fibrisolvens 16/4] Length = 561 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 178/570 (31%), Positives = 299/570 (52%), Gaps = 22/570 (3%) Query: 51 MISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYK 110 M+ I+ F VT +E+EAL+LE N+IK +P++N +LRDDK++PYI +T P + Sbjct: 1 MVQNIDYFEFIVTDSEMEALILECNLIKEYRPKYNTMLRDDKTYPYIEVTLTEAYPRVLF 60 Query: 111 HRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCS 168 R +FGPF S AV TI+ +Q+ + +R+C+ + + + RPCL + I +C Sbjct: 61 SRRLKKNGSKFFGPFTSAGAVHDTIDLVQKLYKIRTCSQKLPENFGKNRPCLNYHIGQCL 120 Query: 169 GPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAAL 228 GPC G + +Y + V + FL+G ++ + + M A+ + D+E A ++RD + ++ Sbjct: 121 GPCQGNVDQNEYRKNVEKVIDFLNGDYYDTLKDLEEKMLLASEELDFEKAALYRDLIESV 180 Query: 229 SHIQNHNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQI 285 + D ++ + A +Q F G+ G FF+ + T+ ++ Sbjct: 181 KACAGRQKATQLDGEDRDIIAMAKSNEDAVVQVFFIRGGKMIGREHFFINIRVDDTDEEL 240 Query: 286 LSYFLRQFYTDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344 + YFL+ +YT P P I + + EE L+E + G +V + PK+G K K++E A Sbjct: 241 IQYFLKDYYTGTPFVPREIFVQYDLEEAELIENWLTNKKGARVYLRTPKRGAKEKLVELA 300 Query: 345 LINAH----RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMV 400 NA + + E +K+ + LP+ R+E +D S+I G +VG MV Sbjct: 301 AKNAQMVLDQDREKIKKEEGRTIGAMKEISSLLGLPNAS-RMEAFDISNISGFQSVGSMV 359 Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSF 460 V + ++ YRKF + V+ +D A M VL+RRFS ++ L + E SF Sbjct: 360 VFEKGKPKRSDYRKFKIKT--VEGPNDYASMYEVLKRRFSHGLEE---LEENGGVIEDSF 414 Query: 461 PSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVL 520 +PD++++DGGKGQ+ A+ V+ +L + I I + K K + L + Sbjct: 415 TKFPDIIMMDGGKGQVHIAEQVIAELGLH--IPIAGMVKDDHHRTRG---LYYKNQELPI 469 Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVK 579 + I RL+DEAHRFAI HR R K +S LD+I+GIGP R++ L++ F + Sbjct: 470 DTHSEGFKLITRLQDEAHRFAIEYHRSLRSKGQVHSFLDDISGIGPKRRKALMKRFISAD 529 Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHK 609 ++ ++ E LA+ EG++++ A +YN+FH Sbjct: 530 KMAEATLEELAATEGMNQEAASNVYNYFHP 559 >gi|313887475|ref|ZP_07821164.1| excinuclease ABC, C subunit [Porphyromonas asaccharolytica PR426713P-I] gi|312923117|gb|EFR33937.1| excinuclease ABC, C subunit [Porphyromonas asaccharolytica PR426713P-I] Length = 609 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 189/622 (30%), Positives = 305/622 (49%), Gaps = 49/622 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P+ PG YQ + G ++YVGKA NL+ R+ SY +++ + T ++S+I + + V Sbjct: 12 TIPQDPGCYQYRNKNGTIIYVGKAKNLRNRVSSYFNNSPKDPKTTRLVSEIRQLEYFVVN 71 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EAL+LE N+IK P++NILL+DDKS+P I+IT P ++ R +G Y+GP Sbjct: 72 SEAEALVLENNLIKTHLPKYNILLKDDKSYPRIVIT-SEPFPRIFATR-KEEGKGDYYGP 129 Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 + +V I+ + R LRSC + V R CL + IK+C GPC G +S+E+ Sbjct: 130 YPNVAMAHTVIDLIHRVLQLRSCRYALTPEVVRERRVDLCLQYHIKKCGGPCQGLVSAEE 189 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y V A++ L G + L E+ MN+ + + ++E A HR + L + Sbjct: 190 YAHAVQLARRILKGEINILIEEEVEEMNRMSERLEFERAEQHRQNIETLRRYSGKHVVAP 249 Query: 240 NRMDCFSLYHNKNLACIQTCFF--HFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 N + ++++ C G K +S+ + +LSY + + Sbjct: 250 NIHEADVFAYDEDDVNGFVCMMQVRHGAVVLAHNLTFKKTVDSSRSDLLSYLIEELRQRF 309 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS------ 351 ++ + E +ITVP++GEK++++E A +N R Sbjct: 310 GSTAREVILADPGEWE----------SDSYRITVPQRGEKKQLLELAQLNVSRYRWDCYK 359 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 +KL+ E +L K + +P+ +E +DNS+I G + V VV K++ Sbjct: 360 RQEKLNPEQRATRLLTTMKKDLGIDRLPRHMECFDNSNIQGTNPVAACVVFKNGKPAKSE 419 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YRKF++ V DD MR ++ RR+ +++ + L PD++I+DG Sbjct: 420 YRKFHVKT--VVGADDYRTMREIIYRRYRRVLDEGQPL--------------PDLIIIDG 463 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GKGQL A LK+L + +++ + +A E + + E LVL+ R L + Sbjct: 464 GKGQLHVACETLKELGIYDKVCVFGLA-----ERFEELYRPGESEPLVLDRRSETLKVVC 518 Query: 532 RLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDEAHRF IT HR R K S LDEI GIG K LLQ+F T + + ++S L Sbjct: 519 HIRDEAHRFGITFHRDSRSKQQTKSILDEIPGIGARSKETLLQAFKTPQRVVKASRAELI 578 Query: 591 SIEGISKKIACKIYNHFHKNTS 612 + G SK K+YNH H + + Sbjct: 579 ATLGTSKG--NKLYNHLHPDEA 598 >gi|160947769|ref|ZP_02094936.1| hypothetical protein PEPMIC_01704 [Parvimonas micra ATCC 33270] gi|158446903|gb|EDP23898.1| hypothetical protein PEPMIC_01704 [Parvimonas micra ATCC 33270] Length = 620 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 182/622 (29%), Positives = 303/622 (48%), Gaps = 28/622 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 +++P+ PGVY M D +++YVGK+ +L+ R++SY +N+ ++ M+ I+ + Sbjct: 13 ELKKLPDLPGVYIMYDKDDKIIYVGKSVSLKNRVRSYFTTNHKYKKVQAMVEHIHRFEYI 72 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 + E E+L+LEAN+IK+ +P++NI L+DDK +PYI IT+ K P + K RD + Y Sbjct: 73 IVNNETESLVLEANLIKKNRPKYNINLKDDKQYPYIKITN-EKFPKILKVRDIKEDKAQY 131 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT--RPCLLFQIKRCSGPCTGEISSEK 179 FGPF ++ +EK + + +R C + + + RPC+ + + RCS PCT I E Sbjct: 132 FGPFPTISDLEKLMELSILIYNIRDCKLNFDKGKFLQRPCMSYYLGRCSAPCTQNIDREN 191 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYE---SAIIHRDRLAALSHIQNHND 236 Y V KFLSG +KE + M Q++ KE+YE + L Q N Sbjct: 192 YNNDVKRVIKFLSGDTTEIKEILLNRMKQSSAKEEYELAMKYRDFLSEIDYLFTKQIFNI 251 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + S + +N+ + + G F ++ + ++ S +RQFY Sbjct: 252 KKFKEYHLISYAYAENILVVAIFIVNDGLVVDRKHFIVENILDLEVEELFSNVIRQFYIS 311 Query: 297 KPCPENILLSEEAEETSLLEISFFKQY---GYKVKITVPKQGEKRKIIEQALINAHRSHT 353 + + ++E L EIS F + + PK+G K ++ NA+ T Sbjct: 312 HHNKVKEVYIDYSDEKFLNEISLFLANIFSEKSISVKNPKKGVKFDQMKILQKNANEILT 371 Query: 354 QKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 + + + + + ++ RIE YD S+I G VG MVV Sbjct: 372 KHIFDNKNINVKYLQAINYLKNILDIDNLD-RIECYDISNISGDFNVGSMVVYKNGFKSS 430 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 YRKF + V QDD + R +L RRF++ + + N SF PD++++ Sbjct: 431 KDYRKFKIKT--VVGQDDYSSHREMLTRRFNRFLDEKIN------SAGSSFSEKPDLILM 482 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKG ++ A+ VL + N++ + +I + K K F + + L++ I F Sbjct: 483 DGGKGHVNVAKEVLLEKNLD--VPVIGLVKNDKHRTKGIIF---EDNYIELDINTNIYRF 537 Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 + +++E HRFAI HR + KK S LDEI G+G ++K LL FG++ I ++S E Sbjct: 538 LFDIQEEVHRFAINYHRSLQNKKLQNSVLDEIKGVGEIKKIKLLSHFGSISSIKKASVEE 597 Query: 589 LASIEGISKKIACKIYNHFHKN 610 L ++ + KK A I+ F+ Sbjct: 598 LLMVDKMDKKTAKNIFEFFNNE 619 >gi|295102428|emb|CBK99973.1| Excinuclease ABC subunit C [Faecalibacterium prausnitzii L2-6] Length = 617 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 165/611 (27%), Positives = 291/611 (47%), Gaps = 15/611 (2%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVTC 64 +P PGVY + D +G ++Y+GKA L+ R+ Y H ++++ MI+ V Sbjct: 13 LPLLPGVYIIRDKSGTIIYIGKAKRLRIRVSQYFREGVPHDNKVSQMIAHAYAFDVIVCQ 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EAL+LEA+ IK P++NILL+DDK + YI +T P L Y GP Sbjct: 73 SEFEALVLEASQIKAHTPKYNILLKDDKGYSYIKVTKDE-WPRLSFTLQKEDDGAEYIGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSEKYME 182 + S A + + F L C+ + R RPCL I +C C+G+IS E Y + Sbjct: 132 YTSSFAARQMAETAMDAFLLPRCSRRFPQEIGRGRPCLNAHIGKCMAVCSGKISRENYEQ 191 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR- 241 V A + G ++ + + M +A+ + ++E+A + RD++AA++ + + + Sbjct: 192 AVKSAVHLIRYGKKDILKTLNERMLEASDRLEFETAALIRDQIAAITKVTAGQKVVVDPD 251 Query: 242 --MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 MD +L C F G+ FL D+ A + R + D+ Sbjct: 252 VEMDVVALAGTPGSVCAAVLRFREGR-LTDKREFLFHDTADIAAVREEFLPRYYLDDEQI 310 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P+ I + E + L+ + ++ G +V++ VP++G+K ++E A NA ++ Sbjct: 311 PKVIAVDELPPDVDALQQALNEKRGSEVQLYVPQRGDKAHLVEMAHTNAVERLARESGRY 370 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + +L + + LP P+ IE YD S+ ++V MV + K YRKF + Sbjct: 371 AREEKLLDELAQVLGLPKPPRTIESYDISNWGDGTSVCGMVTFRDGKPYKAGYRKFKMKT 430 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 V DD A + + RR ++ K E + + + F PD++++DGG+GQ+SAA Sbjct: 431 --VAGTDDYASLAETVSRRAAEYEKYSE-MAANGEPSSNCFGQKPDLLLMDGGRGQVSAA 487 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 + L + + + + + K +G + +NM F+ ++DE HR Sbjct: 488 KAALAGTALAD-VPLYGMVKDDHHRTRA--IVDSEGREIAINMNRGTFTFVTAIQDETHR 544 Query: 540 FAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FA +++ K K+ S L E+ G+GP + L+ F +V + ++P+ L + G+ ++ Sbjct: 545 FANAYRKQQMKQKSYSSTLTEVPGVGPKTAKALMTQFKSVGAVKEATPDQLENTPGVGRQ 604 Query: 599 IACKIYNHFHK 609 +A IY +FH Sbjct: 605 MAQTIYEYFHP 615 >gi|262038633|ref|ZP_06012001.1| excinuclease ABC, C subunit [Leptotrichia goodfellowii F0264] gi|261747339|gb|EEY34810.1| excinuclease ABC, C subunit [Leptotrichia goodfellowii F0264] Length = 593 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 185/616 (30%), Positives = 294/616 (47%), Gaps = 39/616 (6%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIR 59 + + MP PGVY M +I G+++YVGKA NL+ R+ SY + N+H + ++ I++I Sbjct: 8 VEYKNMPNSPGVYLMKNINGKIIYVGKAKNLKNRVSSYFKNINSHNVKTLELVKNIDDIE 67 Query: 60 FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST--I 117 F + TEVEAL+LE N+IK+ +P++NILL+D+K++PYI T + K P + R + Sbjct: 68 FFICKTEVEALILENNLIKKYRPKYNILLKDEKTYPYIKFT-REKFPKIEIVRSTKKLNE 126 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 + YFGP+ S + +L R F +R C S+ T PCL + + C+ PC + Sbjct: 127 KADYFGPYPSGIFF--AVKTLLRIFPVRDCKRSM-EKVTIPCLKYFMNTCTAPCKYKDIE 183 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E+Y E V K FL G + + + + M + + ++E A+ R+++ AL + Sbjct: 184 EEYNENVDNFKNFLKGQRTEIFDVLEKRMKKFSDNMEFERALAERNKIEALKKLLQTQII 243 Query: 238 IYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 Y+ D F + + G+ + + + + + +Y Sbjct: 244 EYSKEIDEDVFVFEETSEMVFLCVLNIREGKVINKNHIKISLERGHEDN-LFERLVTSYY 302 Query: 295 TDKPCPENILLSEEAEETS--LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 + P+NI+ + E + E + ++ +++++E +N Sbjct: 303 EKRNIPKNIISDVKYNENEELIKEWAKIEKEKDIKLHFPKINSRRQQLLEMGYLNLKEEV 362 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + Q L+ + L P+RIE +D S+I G AV M V +Y Sbjct: 363 GKHFRQKKIVQEGLQKLKIELQLKEQPQRIECFDISNIQGKDAVAAMTVAINGEVEPREY 422 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472 R F + D DD MMR L RR+S+L + E +P+++++DGG Sbjct: 423 RHFKITVKDTP--DDFLMMREALTRRYSKLSEEE----------------FPNLILIDGG 464 Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532 KGQL A VL+KL IISIAK + E F + E + D L +QR Sbjct: 465 KGQLGIAVDVLEKLGKIEFTDIISIAKREE-----EIFKSYESEPYIFEKTDETLKILQR 519 Query: 533 LRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 LRDEAHRF IT HRK R K S LD+I GIGP RK+ L+ FGT+ I ++ E L Sbjct: 520 LRDEAHRFGITHHRKLRSKRNIKSALDDIEGIGPKRKKELINKFGTIGNIRNATIEELIE 579 Query: 592 IEGISKKIACKIYNHF 607 I + +K+A I Sbjct: 580 I--VPEKVAVSIKEML 593 >gi|157413345|ref|YP_001484211.1| excinuclease ABC subunit C [Prochlorococcus marinus str. MIT 9215] gi|157387920|gb|ABV50625.1| Excinuclease ABC subunit C (UvrC) [Prochlorococcus marinus str. MIT 9215] Length = 644 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 191/627 (30%), Positives = 299/627 (47%), Gaps = 37/627 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 ++P+ G Y DI +LY+GK+ L+ R+ SY ++ ++ T R++ M+ QI I VT Sbjct: 34 EIPKSSGCYLFKDIDNNLLYIGKSKKLRSRVSSYFNNFSDLTPRLSLMVRQITEIEIIVT 93 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG--SY 121 +E EAL LE+N+IK KP FNILL+DDK +PY+ IT K P ++ R Y Sbjct: 94 DSEYEALNLESNLIKANKPYFNILLKDDKKYPYLCITWSEKYPRIFITRKRRNRNNLDRY 153 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GP+ V + T+ +++ F LR S + +G +ISSE+Y Sbjct: 154 YGPYVDVGLLRNTLFLIKKIFPLRHSKLSK----------SFYREITGVDLEKISSEEYR 203 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + V +A G N +L + M+ + YE A RD+++ L + Sbjct: 204 KIVKQASMVFQGRNDDLIRILEEKMSYFSNDLQYEKAAKIRDQISGLKLLTESQKISVPD 263 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D F + KN+A IQ G+ G + K + ++IL + Y + Sbjct: 264 SSINRDIFGIVSEKNIASIQIFQMRSGKLIGRIGYSQKL-EGISESEILQRVFEEHYINV 322 Query: 298 P---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P IL+ E LE ++ KVKI+ PK+ K K IE NA + Sbjct: 323 DGIEIPSEILVQYEFTNKLTLEEWLSQRKQKKVKISNPKRSNKLKTIEMVQKNAKLELNR 382 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 L+ ++ ++D ++ L PKRIE YD SHI G V VV + K YRK Sbjct: 383 ILNGIQDNESAIEDLSQILELNTHPKRIEGYDISHIQGSDPVASQVVFIDGIPSKQNYRK 442 Query: 415 FNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS--------FPSWP 464 + + N+V DD A + V+ RRF + + + + F WP Sbjct: 443 YKIKDNNVYIGHSDDYASIYEVIYRRFKKWSRYKNDGGDLSYLTSSKNNIINNELFSDWP 502 Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524 D+V++DGGKGQL++A L+ LN+E + + S+AK + E + + L +M Sbjct: 503 DLVMIDGGKGQLNSAIKALQDLNLEKDVILCSLAKKNE-----EIYVPGLSKPLKTDMNQ 557 Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISR 583 + ++RLRDEAHRFA++ HR +R K S L +I G+G R + LL+ F +V I Sbjct: 558 KGVMLLRRLRDEAHRFALSFHRNKRSKRMNRSQLTQIPGLGSSRIKDLLEYFKSVDAIRI 617 Query: 584 SSPETLASIEGISKKIACKIYNHFHKN 610 +S + L ++G+ A IYN F+ + Sbjct: 618 ASKDELMKVKGLGANTANDIYNFFNND 644 >gi|257438675|ref|ZP_05614430.1| excinuclease ABC subunit C [Faecalibacterium prausnitzii A2-165] gi|257198904|gb|EEU97188.1| excinuclease ABC subunit C [Faecalibacterium prausnitzii A2-165] Length = 615 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 165/611 (27%), Positives = 292/611 (47%), Gaps = 17/611 (2%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVTC 64 +P PGVY + D + ++Y+GKA L+ R+ Y H ++++ MI+ V Sbjct: 13 LPLLPGVYIIRDKSDTIIYIGKAKRLRIRVSQYFREGVPHDNKVSQMIAHAYAFDVIVCQ 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EAL+LEA+ IK P++NILL+DDK + YI +T + P L Y GP Sbjct: 73 SEFEALVLEASQIKAHTPKYNILLKDDKGYSYIKVT-REAWPRLSFVLQKEEDDAEYIGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSEKYME 182 + S A + + F L C+ + + RPCL I +C C+G+IS E Y + Sbjct: 132 YTSSFAARQMAETALDAFLLPRCSKRFPQDIGKGRPCLNAHIGKCMAVCSGKISCENYNQ 191 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR- 241 V A + G ++ + + M +A+ + ++E+A + RD++ A++ + + + Sbjct: 192 AVKNAVHLIRYGKKDILKILNERMLEASDRLEFETAALLRDQINAITKVTAGQKVVVDPE 251 Query: 242 --MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 MD +L + C F G+ FL D+ A + R + D+ Sbjct: 252 VEMDVVALAGTPSSVCAAVLRFREGR-LTDKREFLFHDTADIAAVREEFLPRYYLDDEQI 310 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P+ I + E ++ L+ + ++ G +V++ VP++G+K ++E A NA ++ Sbjct: 311 PKIIAVDELPPDSEALQQALNEKRGSEVQLYVPQRGDKAHLVEMAHTNAVERLARESGRY 370 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + +L + + L P+ IE YD S+ ++V MV + K YRKF + Sbjct: 371 AREEKLLDEMAQVLGLSKPPRTIESYDISNWGDGTSVCGMVTFRDGKPYKAGYRKFRMKT 430 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 V DD A + + RR ++ K L + + F PD++++DGG+GQ+SAA Sbjct: 431 --VLGTDDYASLAETVSRRAAEYEKYA-ALAAQGQGSDNYFGQKPDLLLMDGGRGQVSAA 487 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 + L ++ + + + + K +G + +NM FI ++DE HR Sbjct: 488 KAALAGTSLAD-VPLYGMVKDDHHRTRA--IVDSEGREIAINMNRGTFTFITAIQDETHR 544 Query: 540 FAITTHRKR--RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 FA RK+ RKK+ S L E+ G+GP + L+ F +V + ++P+ L + G+ Sbjct: 545 FANAY-RKQQMRKKSYSSTLTEVPGVGPKTAKALMTQFKSVGAVREATPDQLENTPGVGP 603 Query: 598 KIACKIYNHFH 608 ++A IY++FH Sbjct: 604 QLAQTIYDYFH 614 >gi|297565936|ref|YP_003684908.1| excinuclease ABC subunit C [Meiothermus silvanus DSM 9946] gi|296850385|gb|ADH63400.1| excinuclease ABC, C subunit [Meiothermus silvanus DSM 9946] Length = 594 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 180/610 (29%), Positives = 284/610 (46%), Gaps = 36/610 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PGVYQ V+YVGKA +L+ R+ SY H + + S+ + + F VT Sbjct: 9 LPEAPGVYQWW-KGSSVIYVGKAKSLKARVSSYFHGEG---KALTIASEADRLEFIVTRD 64 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 EVEALLLEAN+IK +PR+N+L++DDK +P++ +T+ P L R Y+GPF Sbjct: 65 EVEALLLEANLIKLHRPRYNVLMKDDKHYPFLKLTN-EPYPILLIVRRVDNDGARYWGPF 123 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 AV + + R F +R + + R PCL F + RC PC G+ Y E V Sbjct: 124 PDGGAVRRIKRLIDRIFPIRKNSGVPLKKRRYPCLNFSMGRCLAPCIGQADPAAYREMVR 183 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA----ALSHIQNHNDSIYNR 241 + ++ L G L + M QA +D+E A RD++ +Q D Sbjct: 184 QVEQVLDGKVSELLGDLELKMRQAARNQDFERAAEIRDQMEAVRSFFGTVQQAYDPELGD 243 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 +D L A +Q GQ G + F++ E+++ ++L FLR +Y + Sbjct: 244 LDFLGLARAGRYAIVQLYQVRGGQMLGRNSRFIEDVEEASDQELLWAFLRDYYLEATPLP 303 Query: 302 NILLSE-EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--HTQKLST 358 ++L E E+ L + G KV++ +P++G+K +++E A NA + +L Sbjct: 304 PLVLLPSEVEDMGALSQFLSSRAGKKVEVRIPQRGDKTRLLELAEKNARTALETEMRLLE 363 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 L L P RIE YD S++ G S V + V K +YR+ + Sbjct: 364 RKGDHPGLVALKDVLGLSVRPYRIEGYDISNLFGESPVASITVFEGGRPKKAEYRRMKIK 423 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + K+ DD + + RRF+ + + + PD++++DGG GQ+ A Sbjct: 424 TDS-KSPDDYLALEQAIYRRFTGSL--------------SASMAVPDLLLIDGGLGQVRA 468 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 AQ L++ + +I ++ +AK E + G ++ L + P L + RDE H Sbjct: 469 AQKGLERAGI--QIPLVGLAKRE------ETLILPNGRSIELPLTHPALQLLIFQRDETH 520 Query: 539 RFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 + HRK R KA S D I GIGP RK LL F T++ + E LA + G+ K Sbjct: 521 NNGLQFHRKLRSQKALKSVFDNIPGIGPKRKEALLAQFSTLEELKAMDAERLAKLPGMDK 580 Query: 598 KIACKIYNHF 607 + A + Sbjct: 581 RSAEAVLKAL 590 >gi|256845361|ref|ZP_05550819.1| excinuclease ABC, C subunit [Fusobacterium sp. 3_1_36A2] gi|256718920|gb|EEU32475.1| excinuclease ABC, C subunit [Fusobacterium sp. 3_1_36A2] Length = 589 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 186/613 (30%), Positives = 309/613 (50%), Gaps = 39/613 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PGVY M +V+YVGKA NL+ R+ SY + + + ++ I +I F +T Sbjct: 7 DIPESPGVYLMK-KNDKVIYVGKAKNLKNRVSSYFNRVHENEKTNELVKNIEDIEFFLTN 65 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST---IQGSY 121 TE++ALLLE N+IK+ P++NILL+D+K++P+I I+ K P++ R + G Y Sbjct: 66 TEIDALLLENNLIKKYSPKYNILLKDEKTYPFIKIS-KEDFPSIKIVRTTKALDIKSGEY 124 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + N L + F +R C + + RPCL + +K C+GPC + E+Y Sbjct: 125 FGPYP--YGAWRLKNILMKLFKIRDCNRDMKKVSPRPCLKYYMKSCTGPCVYKDIKEEYN 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + V K+ G L ++ M++A+ D+E +II+R+++ L I + Y R Sbjct: 183 KDVENLKQVFRGNTSKLINELTTLMDKASQDMDFEKSIIYREQIKELKAIASSQIIQYER 242 Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F + A I G+ G + + ++ T+ I +Y+ Sbjct: 243 ELDEDIFVFKTILDKAFICVLNMRDGKILGKSSTSIDLKNKITDN-IYEAIFMSYYSKHI 301 Query: 299 CPENILLSEEAEET--SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P++++L E E +++ ++ K + ++++++ A N R Sbjct: 302 LPKSLVLDAEYENELAVVVKALTNEEGKKKEFHFPKIKSRRKELLDMAYKNLERDLETYF 361 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 S + + + +KD L P++IE +D S+I G AV M V E + +YRKF Sbjct: 362 SKKDTIEKGIKDLHDILELKRFPRKIECFDISNIQGKDAVASMSVSIEGRAARKEYRKFK 421 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + D DD +MMR V+ERR+S+L + +PDV+++DGG GQ+ Sbjct: 422 IRCKDTP--DDFSMMREVIERRYSKLADRD----------------FPDVILIDGGLGQI 463 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 ++A VL++L + ++S+AK + E + + L+ L QR+RDE Sbjct: 464 NSAGEVLERLGKIHLSELLSLAKRDE-----EIYKYGESIPYSLSKDMEALKIFQRVRDE 518 Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 AHRF IT HRK R K S LD+INGIG +R++ LL FG++ I ++S E L I + Sbjct: 519 AHRFGITYHRKLRSKRIISSELDKINGIGEVRRKKLLTKFGSISGIKKASIEELKEI--V 576 Query: 596 SKKIACKIYNHFH 608 +K+A +I N Sbjct: 577 PEKVALEIKNKIR 589 >gi|332299653|ref|YP_004441574.1| UvrABC system protein C [Porphyromonas asaccharolytica DSM 20707] gi|332176716|gb|AEE12406.1| UvrABC system protein C [Porphyromonas asaccharolytica DSM 20707] Length = 609 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 189/622 (30%), Positives = 306/622 (49%), Gaps = 49/622 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P+ PG YQ + G ++YVGKA NL+ R+ SY +++ + T ++S+I + + V Sbjct: 12 TIPQDPGCYQYRNKNGTIIYVGKAKNLRNRVSSYFNNSPKDPKTTRLVSEIRQLEYFVVN 71 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EAL+LE N+IK P++NILL+DDKS+P I+IT P ++ R +G Y+GP Sbjct: 72 SEAEALVLENNLIKTHLPKYNILLKDDKSYPRIVIT-SEPFPRIFATR-KEEGKGDYYGP 129 Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 + +V I+ + R LRSC + V R CL + IK+C GPC G +S+E+ Sbjct: 130 YPNVAMAHTVIDLIHRVLQLRSCRYALTPEVVRERRVDLCLQYHIKKCGGPCQGLVSAEE 189 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y V A++ L G + L E+ MN+ + + ++E A HR + L + Sbjct: 190 YAHAVQLARRILKGEINILIEEEVEEMNRMSERLEFERAEQHRQNIETLRRYSGKHVVAP 249 Query: 240 NRMDCFSLYHNKNLACIQTCFF--HFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 N + ++++ C G K +S+ + +LSY + + Sbjct: 250 NIHEADVFAYDEDDVNGFVCMMQVRHGAVVLAHNLTFKKTVDSSRSDLLSYLIEELRQRF 309 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS------ 351 ++ + E + +ITVP++GEK++++E A +N R Sbjct: 310 GSTAREVILADPGEWA----------SDSYRITVPQRGEKKQLLELAQLNVSRYRWDCYK 359 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 +KL+ E +L K + +P+ +E +DNS+I G + V VV K++ Sbjct: 360 RQEKLNPEQRATRLLTTMKKDLGIDRLPRHMECFDNSNIQGTNPVAACVVFKNGKPAKSE 419 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YRKF++ V DD MR ++ RR+ +++ + L PD++I+DG Sbjct: 420 YRKFHVKT--VVGADDYRTMREIIYRRYRRVLDEGQPL--------------PDLIIIDG 463 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GKGQL A LK+L + +++ + +A E + + E LVL+ R L + Sbjct: 464 GKGQLHVACETLKELGIYDKVCVFGLA-----ERFEELYRPGESEPLVLDRRSETLKVVC 518 Query: 532 RLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDEAHRF IT HR R K S LDEI GIG K LLQ+F T + + ++S L Sbjct: 519 HIRDEAHRFGITFHRDSRSKQQTKSILDEIPGIGARSKETLLQAFKTPQRVVKASRAELI 578 Query: 591 SIEGISKKIACKIYNHFHKNTS 612 + G SK K+YNH H + + Sbjct: 579 ATLGTSKG--NKLYNHLHPDEA 598 >gi|254526395|ref|ZP_05138447.1| excinuclease ABC, C subunit [Prochlorococcus marinus str. MIT 9202] gi|221537819|gb|EEE40272.1| excinuclease ABC, C subunit [Prochlorococcus marinus str. MIT 9202] Length = 644 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 192/627 (30%), Positives = 298/627 (47%), Gaps = 37/627 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 ++P+ G Y DI +LY+GK+ L+ R+ SY ++ ++ T R++ M+ QI I VT Sbjct: 34 EIPKSSGCYLFKDIDNNLLYIGKSKKLRSRVSSYFNNFSDLTPRLSLMVRQITEIEIIVT 93 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS--STIQGSY 121 +E EAL LE+N+IK KP FNILL+DDK +PY+ IT K P ++ R Y Sbjct: 94 DSEYEALNLESNLIKTNKPYFNILLKDDKKYPYLCITWSEKYPRIFITRKRRNRNDLDRY 153 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GP+ V + T+ +++ F LR S + +G +ISSE+Y Sbjct: 154 YGPYVDVGLLRNTLFLIKKIFPLRHSKLSK----------SFYREITGLDLEKISSEEYR 203 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + V +A G N +L + M+ + YE A RD+++ L + Sbjct: 204 KIVKQASMVFQGRNDDLIRILENKMSYFSNDLQYEKAAKIRDQISGLKLLTESQKISVPD 263 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D F + KN+A IQ G+ G + K + ++IL + Y + Sbjct: 264 SSINRDIFGIVSEKNIASIQIFQMRSGKLIGRIGYSQKL-EGISESEILQRVFEEHYINV 322 Query: 298 P---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P IL+ E LE + KVKI PK+ K K IE NA + Sbjct: 323 DGIEIPSEILVQYEFTNKQTLEEWLSQLKQKKVKILNPKRSNKLKTIEMVQKNAKLELNR 382 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 L+ ++ ++D ++ L PKRIE YD SHI G V VV + K YRK Sbjct: 383 ILNGIQDNESAIEDLSQILELNTHPKRIEGYDISHIQGSDPVASQVVFIDGIPSKQNYRK 442 Query: 415 FNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS--------FPSWP 464 + + N+V DD A + V+ RRF + + +++ F WP Sbjct: 443 YKIKDNNVYIGHSDDYASIYEVIYRRFKKWSRYKKDGGDLSYLINSKNNVINKELFSDWP 502 Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524 D+V++DGGKGQL++A L+ LN+E + + S+AK + E + + L +M Sbjct: 503 DLVMIDGGKGQLNSAIKALEDLNLEKDVILCSLAKKKE-----EIYVPGLSKPLNTDMNQ 557 Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISR 583 + ++RLRDEAHRFA++ HR +R K S L +I G+G R + LL+ F +V I Sbjct: 558 KGVMLLRRLRDEAHRFALSFHRNKRSKRMNKSQLTQIPGLGSSRIKDLLEHFNSVDAIRI 617 Query: 584 SSPETLASIEGISKKIACKIYNHFHKN 610 +S E L ++G+ A IYN F+ + Sbjct: 618 ASKEDLMKVKGLGANTANDIYNFFNND 644 >gi|228469910|ref|ZP_04054849.1| excinuclease ABC subunit C [Porphyromonas uenonis 60-3] gi|228308545|gb|EEK17333.1| excinuclease ABC subunit C [Porphyromonas uenonis 60-3] Length = 602 Score = 435 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 188/626 (30%), Positives = 304/626 (48%), Gaps = 49/626 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P+ PG YQ + G ++YVGKA NL+ R+ SY +++ + T ++S+I + + V Sbjct: 12 TIPQEPGCYQYRNKNGTIIYVGKAKNLRNRVSSYFNNSPKNPKTTRLVSEIRQLEYFVVN 71 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EAL+LE N+IK P++NILL+DDKS+P I+IT P ++ R +G YFGP Sbjct: 72 TEAEALVLENNLIKTHLPKYNILLKDDKSYPRIVIT-DEPFPRIFATRKEV-GKGDYFGP 129 Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 + +V I+ + R LRSC + V R CL + IK+C GPC G +S+E+ Sbjct: 130 YPNVAMAHTVIDLIHRVLQLRSCRYALTPEVVRERRVDLCLQYHIKKCGGPCQGFVSAEE 189 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y V A++ L G L E+ MN+ + + ++E A HR + L + Sbjct: 190 YDHSVQLARRILKGEISILIEEEVEEMNRMSERLEFERAEQHRQNIEVLRRYSGKHVVAP 249 Query: 240 NRMDCFSLYHNKNLACIQTCFF--HFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 N + ++++ C G K +S+ + +L+Y + + Sbjct: 250 NIREADVFAYDEDDVNGFVCMMQVRHGAVVLAHNLTFKKTVDSSRSDLLAYLIEELRQRF 309 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA------HRS 351 ++ E E +ITVP++GEK+ +++ A +N Sbjct: 310 GSTAREVILAEPGEWE----------SDSYRITVPQRGEKKHLLDLAQVNVSGYRWDCYK 359 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 +KL+ E +L K + +P+ +E +DNS+I G + V VV K++ Sbjct: 360 RQEKLNPEQRATRLLTTMKKDLGIDRLPRHMECFDNSNIQGTNPVAACVVFKNGKPAKSE 419 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YRKF++ V DD MR ++ RR+ +++ ++L PD++I+DG Sbjct: 420 YRKFHVKT--VVGADDYRTMREIIYRRYRRMLDEGQSL--------------PDLIIIDG 463 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GKGQL A LK+L++ +++ + +A E + + E LVL+ R L + Sbjct: 464 GKGQLHVACDTLKELDIYDKVCVFGLA-----ERFEELYRPGESEPLVLDRRSETLKVVC 518 Query: 532 RLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 +RDEAHRF IT HR R K S LDEI GIG K L+++F T + + ++S L Sbjct: 519 HIRDEAHRFGITFHRDSRSKQQTKSILDEIPGIGARSKETLMRAFKTPQRVVKASRAELI 578 Query: 591 SIEGISKKIACKIYNHFHKNTSHTPT 616 G SK K+YNH H + + T Sbjct: 579 ETLGASKGS--KLYNHLHPDENIETT 602 >gi|94987143|ref|YP_595076.1| nuclease subunit of the excinuclease complex [Lawsonia intracellularis PHE/MN1-00] gi|119367663|sp|Q1MQH2|UVRC_LAWIP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|94731392|emb|CAJ54755.1| Nuclease subunit of the excinuclease complex [Lawsonia intracellularis PHE/MN1-00] Length = 621 Score = 435 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 193/634 (30%), Positives = 288/634 (45%), Gaps = 51/634 (8%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFT 61 +P PGVY D GR++YVGKA NL+KR+ SY T + M++ N + Sbjct: 6 PSSIPTTPGVYLYKDSQGRIIYVGKARNLRKRVLSYFRDGLVITPKTKAMMNHANLLETI 65 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T TE EALLLEA++IK+ +PR+NI+LRDDK + I P L R S Y Sbjct: 66 STNTEKEALLLEASLIKKHRPRYNIVLRDDKQYLLFRIQKGIPFPRLEIVRQSYKDNAVY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPF S +V T + + F LR C+D VF +R RPCL F +++C PCT E+ + Y Sbjct: 126 FGPFTSGTSVRDTWKFIHKIFPLRRCSDKVFNNRIRPCLYFYLQQCLAPCTEEVDPKDYA 185 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + + + FLSG + L E + ++M A+ ++E A RD++ A+ H + Sbjct: 186 VLIQKVELFLSGKSKELVELLQKDMLYASEALEFEKAATLRDQIQAIKHTIERQSVVLPE 245 Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-K 297 MD + N + F G+ TFF ++L FL QFY+ Sbjct: 246 GGDMDVIGIAVVNNGLALGFLFVREGKLLDGRTFFWPGLELDDGPELLGSFLSQFYSPIS 305 Query: 298 PCPENILLSEEAEETSLLEISFFKQY-----------GYKVKITVPKQGEKRKIIEQALI 346 P I++ E T+ + + V+I VPK + +++ A+ Sbjct: 306 SIPPRIIVPWLPESTNNKDEISEDTFETLKYVLEDIRNSTVRIEVPKNIIESNLVDIAVT 365 Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 NA + KL +S K F RIE D SHI G + MVV ++ Sbjct: 366 NAREAVQTKLGEPMS-----AKLAKVFHTDKPIFRIECVDVSHISGTNTRVGMVVFEDSQ 420 Query: 407 FVKNQYRKFNLHPN--DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWP 464 +KN YR ++ + DD A + +R + S P W Sbjct: 421 PLKNDYRIYSTTEDNSPFIKGDDYAALASWAKR------------------RIQSGPPWA 462 Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAK------GPKRSAGM---EKFFVKKG 515 D+V++DGGKGQ++A Q V + ++++ + IAK R AG + F V + Sbjct: 463 DLVLIDGGKGQINAVQRVFNEHHLKDVFILAGIAKARNEEGRVDRRAGNIGDKIFVVGRM 522 Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQS 574 L L P L F+Q +RD AH F + HRK RK A L I GIG +LL Sbjct: 523 NPLTLKEGSPELLFLQYVRDTAHNFVLGKHRKARKNTALLGELLRIPGIGQATAKLLWSH 582 Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 F TV+ ++ ++ + L +I GI + A + Sbjct: 583 FKTVEAMTCATIKDLEAIPGIGEAKARMLAERLQ 616 >gi|317152945|ref|YP_004120993.1| excinuclease ABC subunit C [Desulfovibrio aespoeensis Aspo-2] gi|316943196|gb|ADU62247.1| excinuclease ABC, C subunit [Desulfovibrio aespoeensis Aspo-2] Length = 604 Score = 435 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 169/611 (27%), Positives = 278/611 (45%), Gaps = 34/611 (5%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVTCT 65 P+ PGVY M + GR++YVGKA L++R+ SY + T + ++ Q+ + +T T Sbjct: 15 PDSPGVYLMKNARGRIIYVGKAKRLRRRLASYFQKSSGLTPKTLALVGQVCAVDVLLTGT 74 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLE +IK+ +PR+N++L+DDK + + K + P L R YFGPF Sbjct: 75 EKEALLLEEGLIKKHRPRYNVVLKDDKQYVLFRLDRKAEFPRLSVTRKVVRDGSVYFGPF 134 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 S A T L + F LR C+D VFR+R RPCL + +C PC + Y + V Sbjct: 135 TSGAAARTTWKLLGKVFPLRKCSDHVFRNRVRPCLYHHLHQCLAPCVLNVDRAVYKDMVR 194 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 + LSG + L + + M +A+ +YE A + RD++ A+ ++ + Sbjct: 195 RVEMLLSGKSGELLTTLEKRMAEASAAMEYEQAALLRDQIRAVRQTVEGQVAVCHDTRDR 254 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D L +++ + F G+ FF + +++ F+ QFY Sbjct: 255 DVLGLAASESGLGLGLLFIRQGRLLDEKQFFWPGLTLDEGPEVIQSFVMQFYGAARFIPP 314 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 +++ L+ ++ V++ +P+ +++K++E A A ++ ++ S Sbjct: 315 MIIVPYEMVEPLVAEVLAERRTGPVRLVLPRTTQEKKLLELARDVARQARQRRDSISAR- 373 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 + LP P+RIE D SH+ G VV + R + + Sbjct: 374 ------LARALNLPAEPERIECVDASHLGGSDMRVGQVVFEAGRRDREASRLYAFPDLEG 427 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 D L +++ S P WPD+V++DGG+GQL+A + Sbjct: 428 TGDDYA-------------------ALAAWARRRVESGPPWPDLVLIDGGRGQLAAVERA 468 Query: 483 LKKLNVENRITIISIAKGPKRSAG-ME--KFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 L + E +++IAKGP R AG +E F + + L L F+Q +RD AHR Sbjct: 469 LSECVEETCWELVAIAKGPSRRAGELEDVVFRPGRKNPMPLKPGSAELLFLQMVRDTAHR 528 Query: 540 FAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 F + R RKK S L + GIGP RLL F ++ + + P+ + ++ GI K Sbjct: 529 FVLGRQRIARKKTVLQSELTLLPGIGPKTARLLWDRFESLDAMLAADPQAIRALPGIGGK 588 Query: 599 IACKIYNHFHK 609 A I+ K Sbjct: 589 KAELIHAALQK 599 >gi|307564834|ref|ZP_07627362.1| excinuclease ABC, C subunit [Prevotella amnii CRIS 21A-A] gi|307346556|gb|EFN91865.1| excinuclease ABC, C subunit [Prevotella amnii CRIS 21A-A] Length = 613 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 166/626 (26%), Positives = 304/626 (48%), Gaps = 50/626 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 MPE PG YQ D ++YVGKA NL++R+ SY H + ++S+I +I +++ Sbjct: 19 SMPEKPGTYQYYDKDNIIIYVGKAKNLKRRVASYFHKEVDRFKTKLLVSKIFDISYSIVN 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E +ALL+E +IK+ +PR+N+LL+D K++P I +T+ P ++ R + G+YFGP Sbjct: 79 SEEDALLIENQLIKQYQPRYNVLLKDGKTYPSICVTN-ELFPRIFHTRTINKKLGTYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 ++ + ++ ++ +++T+ RSC + + + + + CL + + C PC + S + Sbjct: 138 YSHISSMYAILDIIKKTYKPRSCRFPITKEGIQQGKYKSCLEYHMGNCGAPCINKQSYNE 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y E + +AK+ L G +++ I + M + + + +E A I + + AL + ++ + Sbjct: 198 YQENIKQAKEVLKGNTRSVQHIIRKQMEELSEQLRFEEAEICKQKYIALDNFATKSEIVS 257 Query: 240 NRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + ++ N A I G + T+ K + ++A++L+ + + Sbjct: 258 YTITDVDVFSIDNDETNKNAFINYIHVTNGAINQSFTYEYKRKLDESDAELLNEAIPEIR 317 Query: 295 TDKPCP-ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 + I++ E + +P++G+KR ++E + +NA + Sbjct: 318 ERFKSKAKEIIVPFELDFK-----------IKDADFFIPQRGDKRHLLELSQMNAKQYKF 366 Query: 354 QKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 +L E ++ + K LP +P IE +DNS+I G AV +V + Sbjct: 367 DRLKQAEKLNPEQKQTRLMTELRDKLKLPKLPYTIECFDNSNISGTDAVAGCIVYKKMKP 426 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 K YRK+N+ V+ +D A M+ V+ RR+S++ PD++ Sbjct: 427 SKKDYRKYNIKT--VEGPNDYASMQEVVRRRYSKIKAEG--------------TPLPDLI 470 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPIL 527 I DGGKGQ+ + V++ + I I +AK K E + + + + + Sbjct: 471 ITDGGKGQMEVVRTVIED-ELHLHIPIAGLAKNDKHRT-NELLYGFPAQTISIKPTSELF 528 Query: 528 YFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586 + +++DE HR+AI+ HR +R K +S LDEI GIGP K LL+ T+ I + Sbjct: 529 KVLTQIQDEVHRYAISFHRDKRSKHQLHSVLDEIPGIGPKTKEALLKELKTLSNIKTTDL 588 Query: 587 ETLASIEGISKKIACKIYNHFHKNTS 612 +TL SI I A I+N+FH T Sbjct: 589 QTLTSI--IGSFKAEIIFNYFHNKTD 612 >gi|294782085|ref|ZP_06747411.1| excinuclease ABC subunit C [Fusobacterium sp. 1_1_41FAA] gi|294480726|gb|EFG28501.1| excinuclease ABC subunit C [Fusobacterium sp. 1_1_41FAA] Length = 589 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 191/613 (31%), Positives = 306/613 (49%), Gaps = 39/613 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PGVY M +V+YVGKA NL+ R+ SY + + + + ++ I +I F +T Sbjct: 7 NIPESPGVYLMK-KNNKVIYVGKAKNLKNRVSSYFNRVHESEKTNELVKNIEDIEFFLTN 65 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST---IQGSY 121 TE++ALLLE N+IK+ P++NILL+D+K++P+I I+ K P++ R + G Y Sbjct: 66 TEIDALLLENNLIKKYSPKYNILLKDEKTYPFIKIS-KEDFPSIKIVRTTKALDIKTGEY 124 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + L + F +R C + + RPCL + +K C+GPC + E Y Sbjct: 125 FGPYP--YGAWRLKAVLMKLFKIRDCNRDMKKKSQRPCLKYYMKSCTGPCVYKDIKEDYN 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + + K+ L G + L ++ MN++ + D+E +II+R+++ L +I N Y R Sbjct: 183 KNIESLKQVLRGNSSKLISDLSLLMNKSAEEMDFEKSIIYREQIKELKNIANSQIIQYER 242 Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F + I G+ G + L ++ T+ + +Y+ Sbjct: 243 ELDEDIFVFKTILDKTFICVLNMRDGKILGKTSTSLDLKNKITDN-VFEAIFMSYYSKHI 301 Query: 299 CPENILLSEEAEET--SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P++++L E E ++E + K + ++ ++E A N R Sbjct: 302 LPKSLVLDAEYENELAIVVEALTLEVSKKKEFHFPKIKSRRKDLLEMAYKNLERDIESYF 361 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 S + + + +KD L P++IE +D S+I G AV M V E K +YRKF Sbjct: 362 SKKDTIEKGIKDLHDILNLKRFPRKIECFDISNIQGKDAVASMSVSIEGRAAKKEYRKFK 421 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + D DD +MMR V+ERR+S+L +PDV+++DGG GQ+ Sbjct: 422 IRCKDTP--DDFSMMREVIERRYSKLAD----------------IDFPDVILIDGGLGQI 463 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 +AA +LKKL + ++S+A E + + E VL+ L QR+RDE Sbjct: 464 NAAAEILKKLGKLHLSELLSLA-----ERNEEIYKYGEPEPYVLSKDMEALKIFQRVRDE 518 Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 AHRF +T HRK R K S LD I GIG +R++ LL FG+V I ++S E L I + Sbjct: 519 AHRFGVTYHRKLRSKRIISSELDRIEGIGEVRRKKLLTKFGSVTAIKKASIEELKEI--V 576 Query: 596 SKKIACKIYNHFH 608 +K+A +I NH Sbjct: 577 PEKVALEIKNHIK 589 >gi|298372483|ref|ZP_06982473.1| excinuclease ABC subunit C [Bacteroidetes oral taxon 274 str. F0058] gi|298275387|gb|EFI16938.1| excinuclease ABC subunit C [Bacteroidetes oral taxon 274 str. F0058] Length = 600 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 171/621 (27%), Positives = 293/621 (47%), Gaps = 50/621 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P PGVYQ D G ++Y+GKA NL+KR+ SY + + ++ QI +IR+ Sbjct: 8 KIDALPHLPGVYQFFDAKGTIIYIGKAKNLKKRVSSYFVKTPDSPKTAILVRQIVDIRYI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V TE +ALLLE+N+IKR PR+N++L+ ++PY+ IT K P ++K R + Sbjct: 68 VVKTENDALLLESNLIKRFLPRYNLMLKYGTTYPYLCIT-KEDFPRVFKTRKTLPD-CEL 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEIS 176 FGP++ + + ++ + +RSC +S+ + R + CL + IK C G C G S Sbjct: 126 FGPYSIAGTLNALLELIKTIYPVRSCKLPLTEESIAKKRYKLCLEYHIKNCRGVCCGLQS 185 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 Y + + + G +H +++ + N+ + + +E A +++ A+ + Sbjct: 186 KADYNAMISDIRTIAKGHSHIVEKYLLDNIKILSEQLRFEEAQRLKEKYDAIREYRQKTV 245 Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 D FS ++ I G + T K + E + ++ S + + Sbjct: 246 ITTQSDATLDVFSFDTDQTTVYINMLRVVNGSIIQSNTIEYKKNIEEVDGEVFSSGIAEL 305 Query: 294 YTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----- 348 ++ + V+ VPK+ K+++++ + N Sbjct: 306 REKYASEARQIVVPFVP----------EFTIDGVEYIVPKRDYKKELLDLSYRNVLQYKK 355 Query: 349 -HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 + QKL+T + ++ + + L ++P IE++DNSH G AV VV Sbjct: 356 DKYTQAQKLNTNQRNYALMNEIREMLHLDNMPHTIEMFDNSHTAGDEAVAACVVFRNLRP 415 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 +K QYRK+ + + DD A M+ V+ RR+S++I L PD++ Sbjct: 416 LKEQYRKYIIKSD--GGGDDYASMKEVINRRYSRMISEGSKL--------------PDLI 459 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPIL 527 + DGGKGQ+SA + VL+ L + + + +AK K F + + L +D + Sbjct: 460 LADGGKGQVSAVRSVLEALGIA--VPVAGLAKNDKHRTNELIF---DDKVIGLKPQDSVF 514 Query: 528 YFIQRLRDEAHRFAITTHR-KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586 F +++DE HRFAIT HR KR KK S LD+I IG K+ LLQ F +V+ I ++ Sbjct: 515 KFFTKMQDEVHRFAITFHRDKRSKKQVASELDDIKNIGETTKKTLLQHFKSVERIKKADF 574 Query: 587 ETLASIEGISKKIACKIYNHF 607 + L I I K A + +HF Sbjct: 575 DELEKI--IGKNRAKILISHF 593 >gi|254303068|ref|ZP_04970426.1| excision endonuclease subunit UvrC [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323260|gb|EDK88510.1| excision endonuclease subunit UvrC [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 589 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 189/610 (30%), Positives = 308/610 (50%), Gaps = 39/610 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PGVY M +V+YVGKA NL+ R+ SY + + + ++ I +I F +T Sbjct: 7 DIPESPGVYLMK-KNDKVIYVGKAKNLKNRVSSYFNRVHENEKTNELVKNIEDIEFFLTN 65 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST---IQGSY 121 TE++ALLLE N+IK+ P++NILL+D+K++P+I I+ K P++ R + G Y Sbjct: 66 TEIDALLLENNLIKKYSPKYNILLKDEKTYPFIKIS-KEDFPSIKIVRTTKALDIKSGEY 124 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + N L + F +R C + + RPCL + +K C+GPC + E+Y Sbjct: 125 FGPYP--YGAWRLKNILMKLFKIRDCNRDMKKVSPRPCLKYYMKSCTGPCVYKDIKEEYN 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 V K+ L G L ++ MN+A+ D+E +II+R+++ L I N Y R Sbjct: 183 RDVENLKQVLRGNTSKLINELTTLMNKASQDMDFEKSIIYREQIKELKSIANSQIIQYER 242 Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F + I G+ G + + ++ T+ I +Y+ Sbjct: 243 ELDEDIFVFKTILDKTFICVLNMRDGKILGKSSTSIDLKNKITDN-IYEAIFMSYYSKHI 301 Query: 299 CPENILLSEEAEET--SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P++++L E E +++ ++ K + ++++++ A N R Sbjct: 302 LPKSLVLDAEYENELSVVVKALTNEESKKKEFHFPKIKSRRKELLDMAYKNLERDLETYF 361 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 S + + + +KD L P++IE +D S+I G AV M V E K +YRKF Sbjct: 362 SKKDTIEKGIKDLHDILELKRFPRKIECFDISNIQGKDAVASMSVSIEGRAAKKEYRKFK 421 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + D DD +MMR V+ERR+S+L E +PDV+++DGG GQ+ Sbjct: 422 IRCKDTP--DDFSMMREVIERRYSKLPDIE----------------FPDVILIDGGLGQI 463 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 ++A VL++L + ++S+AK + E + + L+ L QR+RDE Sbjct: 464 NSAGEVLERLGKIHLSELLSLAKRDE-----EIYKYGESVPYSLSKDMEALKIFQRVRDE 518 Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 AHRF IT HRK R K S LD+I+GIG +R++ LL FG++ I ++S + L I I Sbjct: 519 AHRFGITYHRKLRSKRIISSELDKIDGIGEVRRKKLLTKFGSISGIKKASIDELKEI--I 576 Query: 596 SKKIACKIYN 605 +K+A +I N Sbjct: 577 PEKVALEIKN 586 >gi|227524123|ref|ZP_03954172.1| excinuclease ABC subunit C [Lactobacillus hilgardii ATCC 8290] gi|227088754|gb|EEI24066.1| excinuclease ABC subunit C [Lactobacillus hilgardii ATCC 8290] Length = 589 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 173/609 (28%), Positives = 281/609 (46%), Gaps = 43/609 (7%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M DI G+++YVGKA NL+ R++SY ++H + ++S+I + +T T+ EA LLE Sbjct: 1 MKDINGKIIYVGKAKNLKNRVRSYF-KSSHEGKTARLVSEIADFETIITSTDKEAFLLEI 59 Query: 75 NMIKRLKPRFNILLRDDKS-FPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEK 133 +I++ +P FNI L+ S +PYI IT+ + P + YFGP+ +V A E+ Sbjct: 60 TLIQKHRPYFNIKLKQGHSGYPYIKITN-ERDPQIKIVNTLLKDGAYYFGPYPNVYAAEE 118 Query: 134 TINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSG 193 T+N LQ+ + LR C RPCL + + +C G C + Y + K FL+G Sbjct: 119 TVNFLQKVYPLRRCNGFQ----NRPCLYYHMGQCLGACFKVVPEAVYDRQIKRIKSFLNG 174 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHN 250 + K+ +A+ M A+ YE A RD + + I + D F+ Y N Sbjct: 175 NVGHAKQMLAKRMEDASANMAYERAAEIRDLIKYIEITVEKQKIISHDNTPRDIFNYYMN 234 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAE 310 K IQ F + F ++ + ++ P+ IL+ Sbjct: 235 KGWLSIQVFFIRQSRLMKREKRFFPIITDPEEEMVSFISQFYKQKNQILPKEILVPSSLP 294 Query: 311 ETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLSTEISHQMIL 366 + + + + PK+G+KR ++E A NA E + Sbjct: 295 YDVVSSV------VDDIPVRTPKRGQKRDLLEMAGKNAQLVLEEKFRLLELDESKTTGAM 348 Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426 K+ T +P ++E +D+SHI G V MVV + KN YRK+ L V D Sbjct: 349 KELTDAMGIP-EGHKVEAFDHSHIQGADLVSAMVVFVDGQPNKNLYRKYKLKT--VDHAD 405 Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV-LKK 485 + A R V+ RR+++L+K PD++++DGG Q++A + V + + Sbjct: 406 EAASTREVIRRRYTRLLKEH--------------AQMPDLILMDGGTIQMNAVKDVLVNE 451 Query: 486 LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545 L ++ I + + K + F L L+ + Y +QR++DE HRFAIT H Sbjct: 452 LGLD--IPVGGMVKNEHHQTA-DLLFGDSDTPLHLDPKSQGFYLLQRIQDEVHRFAITYH 508 Query: 546 RKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 RK K + S LD I G+GP + LL+ FG++K IS + + L ++ GIS+ +A I Sbjct: 509 RKVHAKNSLGSRLDSIAGVGPKTRNKLLRKFGSLKKISAAPVDDLKAL-GISETVAQTIK 567 Query: 605 NHFHKNTSH 613 K + Sbjct: 568 FSLSKIDAE 576 >gi|262068097|ref|ZP_06027709.1| excinuclease ABC subunit C [Fusobacterium periodonticum ATCC 33693] gi|291378183|gb|EFE85701.1| excinuclease ABC subunit C [Fusobacterium periodonticum ATCC 33693] Length = 589 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 192/613 (31%), Positives = 308/613 (50%), Gaps = 39/613 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PGVY M +V+YVGKA NL+ R+ SY + + + + ++ I +I F +T Sbjct: 7 NIPESPGVYLMK-KNNKVIYVGKAKNLKNRVSSYFNRVHESEKTNELVKNIEDIEFFLTN 65 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST---IQGSY 121 TE++ALLLE N+IK+ P++NILL+D+K++P+I I+ K P++ R + G Y Sbjct: 66 TEIDALLLENNLIKKYSPKYNILLKDEKTYPFIKIS-KEDFPSIKIVRTTKALDIKTGEY 124 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + L + F +R C + + RPCL + +K C+GPC + E Y Sbjct: 125 FGPYP--YGAWRLKAVLMKLFKIRDCNRDMKKKSQRPCLKYYMKSCTGPCVYKDIKEDYN 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + + K+ L G + L ++ MN++ + D+E +II+R+++ L +I N Y R Sbjct: 183 KDIESLKQVLKGNSSKLINDLSILMNKSAEEMDFEKSIIYREQIKELKNIANSQIIQYER 242 Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F + A I G+ G + L ++ T+ I +Y+ Sbjct: 243 ELDEDIFVFKTILDKAFICVLNMRDGKILGKTSTSLDLKNKITDN-IFEAIFMSYYSKHI 301 Query: 299 CPENILLSEEAEET--SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P++++L E E +++ + K + ++ +++ A N R Sbjct: 302 LPKSLVLDAEYENELAIVVKALSIEDSKKKEFHFPKIKSRRKDLLDMAYKNLERDIENYF 361 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 S + + + +KD L P++IE +D S+I G AV M V E K +YRKF Sbjct: 362 SKKDTIEKGIKDLHDILDLKRFPRKIECFDISNIQGKDAVASMSVSIEGRAAKKEYRKFK 421 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + D DD +MMR V+ERR+S+L +PDV+++DGG GQ+ Sbjct: 422 IRCKDTP--DDFSMMREVIERRYSKLAD----------------IDFPDVILIDGGLGQI 463 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 +AA +LKKL + ++S+A E + + E VL+ L QR+RDE Sbjct: 464 NAAAEILKKLGKLHLSELLSLA-----ERNEEIYKYGESEPYVLSKDMEALKIFQRVRDE 518 Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 AHRF +T HRK R K S LD+I GIG +R++ LL FG+V I R+S E L I + Sbjct: 519 AHRFGVTYHRKLRSKRIISSELDKIEGIGEVRRKKLLTKFGSVTAIKRASIEELKEI--V 576 Query: 596 SKKIACKIYNHFH 608 +K+A +I NH Sbjct: 577 PEKVALEIKNHIK 589 >gi|300361554|ref|ZP_07057731.1| excision endonuclease subunit UvrC [Lactobacillus gasseri JV-V03] gi|300354173|gb|EFJ70044.1| excision endonuclease subunit UvrC [Lactobacillus gasseri JV-V03] Length = 600 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 175/622 (28%), Positives = 287/622 (46%), Gaps = 46/622 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+ PG Y M DI G V+YVGK+ NL+ R++SY S R ++ +I + Sbjct: 9 KLKLLPDKPGCYLMKDINGNVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVREIRDFDII 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 ++ E+ LLE +IK+ +P +N+ L+ +PYI IT+ + P G Y Sbjct: 68 TVSSDKESFLLEITLIKKYQPYYNVQLKQGTGYPYIEITN-ERDPQTRLTSIVHKDHGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A + T+ +Q+ + LR C+ H+ RPCL + + +C G C E+ Y Sbjct: 127 FGPYPNVYAAQATLKFIQKVWPLRRCSG----HQGRPCLYYHMGQCLGACFKEVPKSAYD 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + + + K+FL+G +K+ + M QA++ ++E A RD+L + I N Sbjct: 183 KQIRKIKRFLNGDISQVKQDLTEKMTQASMDLEFERAAEFRDQLKYIEQTVEKQKIISND 242 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F+ Y +K+ IQ F + T + F+ QFY + Sbjct: 243 HTQRDIFNFYVDKSWISIQVFFLRQAKLLRRETRLFPLTDTNEPQDAFVSFIAQFYGQRN 302 Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352 P+ +L+ + +L E+ V + P++G+KR ++E A NA Sbjct: 303 RVLPKEVLVPAGIDNEALAEVL-------GVTVRTPQRGQKRALLEMAHDNAKLKLDEKF 355 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + K+ LP+ RIE +D+SHI G V +VV + K++Y Sbjct: 356 RLLELGNRKTKGAQKEIFDALGLPYG-HRIESFDHSHIQGADPVSALVVFTDGEPDKHEY 414 Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 RK+ L D+ R V+ RR+S+L+K + + PD++++D Sbjct: 415 RKYKLKGEVEHQNAADEVGNTREVVRRRYSRLLKEHKKM--------------PDLILMD 460 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEA---LVLNMRDPI 526 GG+ Q+ A VL+ + I + + K F +GE + LN + Sbjct: 461 GGQIQVDACLDVLRN-ELNVNIPVAGMVKDDHHRTNHLIFGDPTQGEELKLIPLNPKSEG 519 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 Y + R++DE HRFAIT HR+ K A S LDEI GIGP + LL+ FG++K I +S Sbjct: 520 FYLMTRIQDEVHRFAITFHRRTHAKNALSSKLDEIKGIGPKSRNKLLRKFGSLKKIKEAS 579 Query: 586 PETLASIEGISKKIACKIYNHF 607 E L G++ A + Sbjct: 580 IEELRDA-GLTLPQAQTVKLSL 600 >gi|116629526|ref|YP_814698.1| excinuclease ABC subunit C [Lactobacillus gasseri ATCC 33323] gi|238852676|ref|ZP_04643086.1| excinuclease ABC subunit C [Lactobacillus gasseri 202-4] gi|122273536|sp|Q043W2|UVRC_LACGA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|116095108|gb|ABJ60260.1| Excinuclease ABC subunit C [Lactobacillus gasseri ATCC 33323] gi|238834822|gb|EEQ27049.1| excinuclease ABC subunit C [Lactobacillus gasseri 202-4] Length = 600 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 175/622 (28%), Positives = 287/622 (46%), Gaps = 46/622 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+ PG Y M DI G V+YVGK+ NL+ R++SY S R ++ +I + Sbjct: 9 KLKLLPDKPGCYLMKDINGNVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVREIRDFDII 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 ++ E+ LLE +IK+ +P +N+ L+ +PYI IT+ + P G Y Sbjct: 68 TVSSDKESFLLEITLIKKYQPYYNVQLKQGTGYPYIEITN-ERDPQTRLTSFVHKDHGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A + T+ +Q+ + LR C+ H+ RPCL + + +C G C E+ Y Sbjct: 127 FGPYPNVYAAQATLKFIQKVWPLRRCSG----HQGRPCLYYHMGQCLGACFKEVPKSAYD 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + + + K+FL+G +K+ + M QA++ ++E A RD+L + I N Sbjct: 183 KQIRKIKRFLNGDISQVKQDLTEKMTQASMNLEFERAAEFRDQLKYIEQTVEKQKIISND 242 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F+ Y +K+ IQ F + T + F+ QFY + Sbjct: 243 HTQRDIFNFYVDKSWISIQVFFLRQAKLLRRETRLFPLTDTNEPQDAFVSFIAQFYGQRN 302 Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352 P+ +L+ + +L E+ V + P++G+KR ++E A NA Sbjct: 303 RVLPKEVLVPAGIDNEALAEVL-------GVAVRTPQRGQKRALLEMAHDNAKLKLDEKF 355 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + K+ LP+ RIE +D+SHI G V +VV + K++Y Sbjct: 356 RLLELGNRKTKGAQKEIFDALGLPYG-HRIESFDHSHIQGADPVSALVVFTDGEPDKHEY 414 Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 RK+ L D+ R V+ RR+S+L+K + + PD++++D Sbjct: 415 RKYKLKGEVEHQNAADEVGNTREVVRRRYSRLLKEHKKM--------------PDLILMD 460 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEA---LVLNMRDPI 526 GG+ Q+ A VL+ + I + + K F +GE + LN + Sbjct: 461 GGQIQVDACLDVLRN-ELNVNIPVAGMVKDDHHRTNHLIFGDPTQGEELKLIPLNPKSEG 519 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 Y + R++DE HRFAIT HR+ K A S LDEI GIGP + LL+ FG++K I +S Sbjct: 520 FYLMTRIQDEVHRFAITFHRRTHAKNALSSKLDEIKGIGPKSRNKLLRKFGSLKKIKEAS 579 Query: 586 PETLASIEGISKKIACKIYNHF 607 E L G++ A + Sbjct: 580 IEELRDA-GLTLPQAQTVKLSL 600 >gi|255530301|ref|YP_003090673.1| excinuclease ABC subunit C [Pedobacter heparinus DSM 2366] gi|255343285|gb|ACU02611.1| excinuclease ABC, C subunit [Pedobacter heparinus DSM 2366] Length = 598 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 187/620 (30%), Positives = 310/620 (50%), Gaps = 52/620 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFTVT 63 +P PG+YQ D G ++Y+GKA +L+ R+ SY + +N + ++S+I I FT+ Sbjct: 12 NIPHKPGIYQYWDAEGTLIYIGKAKDLRNRVGSYFNKDNQMNGKTRVLVSRIRKITFTIV 71 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE++A LLE ++IK+ +PR+NILL+DDK++P+I+I K P +Y R +YFG Sbjct: 72 DTEIDAWLLENSLIKKHQPRYNILLKDDKTYPWIII-KKEPFPRVYWTRKMIKDGSTYFG 130 Query: 124 PFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 P+ASV + I+ ++ T+ LR+C ++ + + CL +QI C GPC + Sbjct: 131 PYASVGMMHTIIDLIKETYPLRTCNLPLSKKNIDDGKFKVCLEYQIGNCKGPCQAYQTEP 190 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 Y + E K L+G N+ + + R + ++ + ++E A ++ +L L Q+ + Sbjct: 191 DYDSNIEEIKDILNGKIGNVIKDVKRVIKKSVDELNFELAHQYQRKLMVLEKYQSKSTVV 250 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 +D S+ ++ A + G T T +K + T+ ++L+ + +F T Sbjct: 251 NSAITNVDVVSIASDERYAFVNYLKVMNGSIIQTQTIEIKKRLDETDEELLTIAIMEFRT 310 Query: 296 D-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA------ 348 + I++ + T PK GEK+K++E + N Sbjct: 311 RFNSTSKEIIVPFDITLTDENLKFTL-----------PKLGEKKKLLELSQKNVLFFKKE 359 Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 + +KL+ ++ IL K L PK IE +DNS+ G V +VV + Sbjct: 360 KLNQYEKLNPDLRTDRILSQMQKDLGLTKSPKHIECFDNSNFQGKYPVSAIVVFKDAKPS 419 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 K YR FN+ V+ +D A M + RR+ ++++ E L P+++I Sbjct: 420 KKDYRHFNVKT--VEGPNDFATMEEAVYRRYKRMLEEENTL--------------PELII 463 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 +DGGKGQLS+A LKKL +E R+T+I IAK + E FF L L+ + L Sbjct: 464 IDGGKGQLSSAMNSLKKLGIEKRVTVIGIAKRLE-----ELFFPGDPYPLYLDKKSETLK 518 Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 IQ+LRDEAHRF IT HRK+R + + L++I GIG LL+ F +VK I + E Sbjct: 519 VIQQLRDEAHRFGITFHRKKRDQGTLKTELEQIPGIGKTTADKLLRHFKSVKKIKEAKEE 578 Query: 588 TLASIEGISKKIACKIYNHF 607 L + ++K + ++F Sbjct: 579 ELTMV--LNKTQVKTLLDYF 596 >gi|260888894|ref|ZP_05900157.1| excinuclease ABC subunit C [Leptotrichia hofstadii F0254] gi|260861341|gb|EEX75841.1| excinuclease ABC subunit C [Leptotrichia hofstadii F0254] Length = 594 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 184/616 (29%), Positives = 292/616 (47%), Gaps = 39/616 (6%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIR 59 + + +P PGVY M + G+++YVGKA NLQ R+KSY + N+H + ++ I +I Sbjct: 9 IKYKDIPTHPGVYLMKNARGKIIYVGKAKNLQNRVKSYFMNVNSHNQKTLELVKNIRDIE 68 Query: 60 FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST--I 117 F + +EVEAL+LE N+IK+ KP++NILL+D+K++PYI T K K P + R + Sbjct: 69 FFICKSEVEALILENNLIKKNKPKYNILLKDEKTYPYIKFT-KEKFPKVEIVRSTKKLNE 127 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 YFGP+ + SL + F +R C S+ T+PCL + +K C PC + Sbjct: 128 NAEYFGPYPMGIFF--AMKSLIKIFPVRDCNRSM-DKITKPCLKYYMKTCPAPCKYKDIE 184 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 ++Y V K FL G + + E + M + + + ++E AI R++LA + + Sbjct: 185 DEYSTNVKNFKNFLKGHSDKVIEMLESRMKKFSDEMEFERAISEREKLAVMKKMLETQII 244 Query: 238 IYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 Y+ D F + + G+ + + + + +Y Sbjct: 245 EYSKEIDEDVFVFEEKRENVFLCVLNIREGKVINKNHTVISMERSQEEN-LFERLITSYY 303 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII--EQALINAHRSH 352 + P++I+ E + LL + K ++ + R++ E +N Sbjct: 304 EKRNIPKHIICDERFMSSELLIKEWAKIEKHREIKFHFPKINSRRLQLLEMGYLNLREEV 363 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + Q L++ K+ L +P RIE +D S+I G AV M V + +Y Sbjct: 364 DKYYRKRRMVQEGLRNLKKELRLKSLPYRIECFDISNIQGKDAVAAMTVALDGETTPKEY 423 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472 R F + D DD MMR L RR+S++ ++ P+++++DGG Sbjct: 424 RHFKITVKDTP--DDFLMMREALTRRYSKMENDK----------------MPNLILIDGG 465 Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532 KGQL A VL+KL +I IAK + E F + E + D L +QR Sbjct: 466 KGQLGVAVDVLEKLGKIEHTDVIGIAKREE-----EIFKSYESEPYLFEKTDETLKILQR 520 Query: 533 LRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 LRDEAHRF IT HRK R K S LD+I GIGP RK+ L++ FG +K I ++ E L Sbjct: 521 LRDEAHRFGITHHRKLRSKRNVKSALDDIAGIGPKRKKELIKKFGLIKNIRNATLEELME 580 Query: 592 IEGISKKIACKIYNHF 607 + + + IA I + Sbjct: 581 V--VPENIAISIKENL 594 >gi|282852093|ref|ZP_06261451.1| excinuclease ABC, C subunit [Lactobacillus gasseri 224-1] gi|282556853|gb|EFB62457.1| excinuclease ABC, C subunit [Lactobacillus gasseri 224-1] Length = 600 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 174/622 (27%), Positives = 286/622 (45%), Gaps = 46/622 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+ PG Y M DI G V+YVGK+ NL+ R++SY S R ++ +I + Sbjct: 9 KLKLLPDKPGCYLMKDINGNVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVREIRDFDII 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 ++ E+ LLE +IK+ +P +N+ L+ +PYI IT+ + P G Y Sbjct: 68 TVSSDKESFLLEITLIKKYQPYYNVQLKQGTGYPYIEITN-ERDPQTRLTSFVHKDHGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A + T+ +Q+ + LR C+ H+ RPCL + + +C G C E+ Y Sbjct: 127 FGPYPNVYAAQATLKFIQKVWPLRRCSG----HQGRPCLYYHMGQCLGACFKEVPKSAYD 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + + + K+FL+G +K+ + M QA++ ++E A RD+L + I N Sbjct: 183 KQIRKIKRFLNGDISQVKQDLTEKMTQASMNLEFERAAEFRDQLKYIEQTVEKQKIISND 242 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F+ Y +K+ IQ F + + F+ QFY + Sbjct: 243 HTQRDIFNFYVDKSWISIQVFFLRQAKLLRRENRLFPLTDTNEPQDAFVSFIAQFYGQRN 302 Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352 P+ +L+ + +L E+ V + P++G+KR ++E A NA Sbjct: 303 RVLPKEVLVPAGIDNEALAEVL-------GVAVRTPQRGQKRALLEMAHDNAKLKLDEKF 355 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + K+ LP+ RIE +D+SHI G V +VV + K++Y Sbjct: 356 RLLELGNRKTKGAQKEIFDALGLPYG-HRIESFDHSHIQGADPVSALVVFTDGEPDKHEY 414 Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 RK+ L D+ R V+ RR+S+L+K + + PD++++D Sbjct: 415 RKYKLKGEVEHQNAADEVGNTREVVRRRYSRLLKEHKKM--------------PDLILID 460 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEA---LVLNMRDPI 526 GG+ Q+ A VL+ + I + + K F +GE + LN + Sbjct: 461 GGQIQVDACLDVLRN-ELNVNIPVAGMVKDDHHRTNHLIFGDPTQGEELKLIPLNPKSEG 519 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 Y + R++DE HRFAIT HR+ K A S LDEI GIGP + LL+ FG++K I +S Sbjct: 520 FYLMTRIQDEVHRFAITFHRRTHAKNALSSKLDEIKGIGPKSRNKLLRKFGSLKKIKEAS 579 Query: 586 PETLASIEGISKKIACKIYNHF 607 E L G++ A + Sbjct: 580 IEELRDA-GLTLPQAQTVKLSL 600 >gi|296117956|ref|ZP_06836539.1| excinuclease ABC subunit C [Corynebacterium ammoniagenes DSM 20306] gi|295969187|gb|EFG82429.1| excinuclease ABC subunit C [Corynebacterium ammoniagenes DSM 20306] Length = 624 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 168/629 (26%), Positives = 287/629 (45%), Gaps = 77/629 (12%) Query: 51 MISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYK 110 M+ N+ +TV +EVEAL LE IK+ PRFN+ RDDK++P + ++ ++P + Sbjct: 1 MVQTAANVEWTVVASEVEALALEYTWIKKFDPRFNVKYRDDKTYPMLAVSVGEQVPRAFF 60 Query: 111 HRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRC 167 +R YFGP++ AV +T++ L R F +R+C+ V+ RPCLL I +C Sbjct: 61 YRGPRRKGVRYFGPYSHAWAVRETLDLLTRVFPMRTCSKGVYNRHEKLGRPCLLGYIGKC 120 Query: 168 SGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAA 227 + PC G +S +++ E V+ F++G + ++ M +A+ ++E A RD L A Sbjct: 121 NAPCIGRVSEDEHRETVNRLVSFMNGNTGPVVRQLTAQMQEASEALEFERAARLRDDLDA 180 Query: 228 LSHIQNHNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ 284 ++ I ++ D + + ++ A +Q G+ RG + ++ + + Sbjct: 181 INKIMEQQAVVFSDGTDADLIAFHTDELEAAVQIFHVRDGRVRGQRGWVVERIGDQATLE 240 Query: 285 -------------ILSYFLRQFYTD-------------------------------KPCP 300 ++ FL QFY D + P Sbjct: 241 KLEEGEEDPALPLLMQNFLIQFYGDAVEREKLEAEEDAALQRRGVDQESRATPRRVQVVP 300 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE- 359 IL+ EE + G +V + VP++G+KR +++ NA + Q Sbjct: 301 REILVHTMPEEAEEVVKLLEDLRGAQVDLRVPQRGDKRSLMQTVEKNAKDALRQHKLKRV 360 Query: 360 ---ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + L+D + + P RIE D SHI G V +VV + K+ YR++ Sbjct: 361 GDLTARSAALQDIQEALGMETAPLRIECTDISHIQGTDVVASLVVFEDGLPRKSDYRRYR 420 Query: 417 LHPNDVKTQ-DDCAMMRMVLERRFSQLIKN---------------EENLNFHPKKQEYSF 460 + + DD + + RRF + ++ +EN+ F Sbjct: 421 IKEAAGDGRSDDVGSIAEITRRRFKRHHEDKLANPDEEAEASNFADENVIEEATDAARKF 480 Query: 461 PSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVL 520 P + I+DGG Q++AAQ V +L + + +T++ +AK + E + E ++L Sbjct: 481 AYPPQLFIVDGGAPQVAAAQKVFDELGIVD-VTLVGLAKRLE-----EIWVPGDDEPVIL 534 Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVK 579 LY +Q++RDEAHRFAI HR++R K S LD I G+GP R+ L++ FG+VK Sbjct: 535 PRNSQALYLLQQIRDEAHRFAINYHRQQRSKRMRSSVLDSIPGLGPTRRMDLVKHFGSVK 594 Query: 580 MISRSSPETLASIEGISKKIACKIYNHFH 608 + +S E +A ++GI K+A I+ H Sbjct: 595 KLKEASEEQIAEVKGIGPKMAATIFEHLR 623 >gi|315038177|ref|YP_004031745.1| excinuclease ABC subunit C [Lactobacillus amylovorus GRL 1112] gi|325956629|ref|YP_004292041.1| excinuclease ABC subunit C [Lactobacillus acidophilus 30SC] gi|312276310|gb|ADQ58950.1| excinuclease ABC subunit C [Lactobacillus amylovorus GRL 1112] gi|325333194|gb|ADZ07102.1| excinuclease ABC subunit C [Lactobacillus acidophilus 30SC] gi|327183454|gb|AEA31901.1| excinuclease ABC subunit C [Lactobacillus amylovorus GRL 1118] Length = 600 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 174/622 (27%), Positives = 287/622 (46%), Gaps = 46/622 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +PE PG Y M DI G V+YVGK+ NL+ R++SY S R ++ +I + Sbjct: 9 KLKLLPEKPGCYLMKDINGTVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVREIRDYDII 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T+ EA LLE +IK+ +P +N+ L+ +PYI IT +H P G Y Sbjct: 68 TVSTDKEAFLLEITLIKKYQPYYNVQLKQGTGYPYIEITREHD-PQTRLTSIVHKDGGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A + T+ +Q+ + LR C RPCL + + +C G C ++ ++Y Sbjct: 127 FGPYPNVYAAQATLKFIQKVYPLRRCHGYQ----GRPCLYYHMGQCLGACFKKVPQKEYD 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 E + + K FL+G +K+ + M +A+ + ++E A RD+L + I N Sbjct: 183 EQIKKIKSFLNGDIAEVKQDLTAKMEKASEQLEFERAAEIRDQLKYIEETVEKQKIISND 242 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 + D F+ Y +K+ IQ F + T + + F+ QFY + Sbjct: 243 NTQRDIFNYYVDKSWISIQIFFLRQAKLLRRETRMFPLTDTTDPEDAFTSFIVQFYGQRN 302 Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P+ +L+ + +L E+ KV + P++G+K+ +++ A NA K Sbjct: 303 RVLPKEVLVPTGLDNDTLAEVL-------KVPVRTPQRGQKKALLDMAKDNAKLKLDDKF 355 Query: 357 S----TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + K+ LP+ IE +D+SHI G V +VV + K Y Sbjct: 356 RLLELGNRKTKGAQKEIFDALGLPYG-HIIESFDHSHIQGADPVSALVVFKDGEPDKTSY 414 Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 RK+ L D+ R V+ RR+ +L++ + + PD++++D Sbjct: 415 RKYKLKGEVEHQNGGDEVRNTREVVRRRYGRLLRENKKM--------------PDLILMD 460 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEA---LVLNMRDPI 526 GG+ Q+ A + VL+ + I + + K K F G + LN + Sbjct: 461 GGQIQVDACEDVLRN-ELNLNIPVAGMVKDDKHRTNHLLFGDPINGIPLKLIPLNPKSEG 519 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 Y + R++DE HRFAIT HR+R K A S LD I GIGP + LL++FG++K I +S Sbjct: 520 FYLMTRIQDEVHRFAITFHRRRHAKNALSSRLDSIKGIGPKSRNKLLRNFGSLKKIKEAS 579 Query: 586 PETLASIEGISKKIACKIYNHF 607 + L + G++ A I Sbjct: 580 VDELRAA-GLTLTQAQTIKLTL 600 >gi|260494651|ref|ZP_05814781.1| excinuclease ABC, C subunit [Fusobacterium sp. 3_1_33] gi|260197813|gb|EEW95330.1| excinuclease ABC, C subunit [Fusobacterium sp. 3_1_33] Length = 589 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 188/613 (30%), Positives = 310/613 (50%), Gaps = 39/613 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE GVY M +V+YVGKA NL+KR+ SY + + + + ++ I +I F +T Sbjct: 7 DIPESSGVYLMK-KNNKVIYVGKAKNLKKRVSSYFNRVHESEKTNELVKNIEDIEFFLTN 65 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST---IQGSY 121 TE +ALLLE N+IK+ P++NILL+D+K++P+I I+ K P + R + G Y Sbjct: 66 TETDALLLENNLIKKYSPKYNILLKDEKTYPFIKIS-KEDFPNIKIVRTTKALDIKSGEY 124 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + N L + F +R C + + RPCL + +K C+GPC + E+Y Sbjct: 125 FGPYP--YGAWRLKNILMKLFKIRDCNRDMKKLSPRPCLKYYMKSCTGPCVYKDIKEEYN 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + V K+ L G L ++ MNQA+ D+E +II+R+++ L I++ Y R Sbjct: 183 KNVENLKQVLRGNTSKLINELTILMNQASQDMDFEKSIIYREQIKELKSIESSQIIQYER 242 Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F + A I G+ G + + ++ T+ I +Y+ Sbjct: 243 ELDEDIFVFKTILDKAFICVLNMRDGKILGKSSTSIDLKNKITDN-IYEAIFMSYYSKHI 301 Query: 299 CPENILLSEEAEET--SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P++++L E E +++ ++ K + ++++++ A N R Sbjct: 302 LPKSLVLDAEYENELSVVVKALTNEESKKKEFHFPKIKSRRKELLDMAYKNLERDLESYF 361 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 S + + + +KD L P++IE +D S+I G AV M V E + +YRKF Sbjct: 362 SKKDTIEKGIKDLHDILELKRFPRKIECFDISNIQGKDAVASMSVSIEGRAARKEYRKFK 421 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + D DD +MMR V+ERR+S+L + +PDV+++DGG GQ+ Sbjct: 422 IRCKDTP--DDFSMMREVIERRYSKLADRD----------------FPDVILIDGGLGQI 463 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 ++A VL++L + ++S+AK + E + + L+ L QR+RDE Sbjct: 464 NSAGEVLERLGKIHLSELLSLAKRDE-----EIYKYGESVPYSLSKDMEALKIFQRVRDE 518 Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 AHRF IT HRK R K S LD+I+GIG +R++ LL FG++ I ++S + L I I Sbjct: 519 AHRFGITYHRKLRSKRIISSELDKIDGIGEVRRKKLLTKFGSISGIKKASIDELKEI--I 576 Query: 596 SKKIACKIYNHFH 608 +K+A +I N Sbjct: 577 PEKVALEIKNKIR 589 >gi|237742020|ref|ZP_04572501.1| excinuclease ABC subunit C [Fusobacterium sp. 4_1_13] gi|229429668|gb|EEO39880.1| excinuclease ABC subunit C [Fusobacterium sp. 4_1_13] Length = 589 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 186/613 (30%), Positives = 310/613 (50%), Gaps = 39/613 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PGVY M +V+YVGKA NL+ R+ SY + + + ++ I +I F +T Sbjct: 7 DIPESPGVYLMK-KNDKVIYVGKAKNLKNRVSSYFNRVHENEKTNELVKNIEDIEFFLTN 65 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST---IQGSY 121 TE++ALLLE N+IK+ P++NILL+D+K++P+I I+ K P++ R + G Y Sbjct: 66 TEIDALLLENNLIKKYSPKYNILLKDEKTYPFIKIS-KEDFPSIKIVRTTKALDIKSGEY 124 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + N L + F +R C + + RPCL + +K C+GPC + E+Y Sbjct: 125 FGPYP--YGAWRLKNILMKLFKIRDCNRDMKKVSPRPCLKYYMKSCTGPCVYKDIKEEYN 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + V K+ L G L ++ M++A+ D+E +II+R+++ L I + Y R Sbjct: 183 KDVENLKQVLRGNTSKLINELTTLMDKASQDMDFEKSIIYREQIKELKAIASSQIIQYER 242 Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F + A I G+ G + + ++ T+ I +Y+ Sbjct: 243 ELDEDIFVFKTILDKAFICVLNMRDGKILGKSSTSIDLKNKITDN-IYEAIFMSYYSKHI 301 Query: 299 CPENILLSEEAEET--SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P++++L E E +++ ++ K + ++++++ A N R Sbjct: 302 LPKSLVLDAEYENELAVVVKALTNEEGKKKEFHFPKIKSRRKELLDMAYKNLERDLETYF 361 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 S + + + +KD L P++IE +D S+I G AV M V E + +YRKF Sbjct: 362 SKKDTIEKGIKDLHDILELKRFPRKIECFDISNIQGKDAVASMSVSIEGRAARKEYRKFK 421 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + D DD +MMR V+ERR+S+L + +PDV+++DGG GQ+ Sbjct: 422 IRCKDTP--DDFSMMREVIERRYSKLADRD----------------FPDVILIDGGLGQI 463 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 ++A VL++L + ++S+AK + E + + L+ L QR+RDE Sbjct: 464 NSAGEVLERLGKIHLSELLSLAKRDE-----EIYKYGESVPYSLSKDMEALKIFQRVRDE 518 Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 AHRF IT HRK R K S LD+INGIG +R++ LL FG++ I +++ E L I + Sbjct: 519 AHRFGITYHRKLRSKRIISSELDKINGIGKVRRKKLLTKFGSISGIKKANIEELKEI--V 576 Query: 596 SKKIACKIYNHFH 608 +K+A +I N Sbjct: 577 PEKVALEIKNKIR 589 >gi|323698319|ref|ZP_08110231.1| excinuclease ABC, C subunit [Desulfovibrio sp. ND132] gi|323458251|gb|EGB14116.1| excinuclease ABC, C subunit [Desulfovibrio desulfuricans ND132] Length = 604 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 176/615 (28%), Positives = 275/615 (44%), Gaps = 36/615 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFT 61 +++ P+ PGVY M D GR+LYVGKA L++R+ SY T + ++++I +I Sbjct: 9 ADRFPDTPGVYLMKDGRGRILYVGKAKKLRRRLASYFRKAEALTPKTRALVARIRHIDTL 68 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 +T TE EALLLE+ +IK+ +PR+N++L+DDK + + + + P L R Y Sbjct: 69 LTATEKEALLLESGLIKKHRPRYNVVLKDDKQYVLFRLDRQSEFPRLSMTRKVVRDGSVY 128 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPF S A L + F LR C D+ FR+R RPCL I +C PC ++ E Y Sbjct: 129 FGPFTSASAARTVWKLLGKVFPLRKCKDTAFRNRVRPCLYHDIGQCWAPCVKDVDREAYA 188 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 E VH + LSG + L + + R M A+ YE A +RD++ A+ ++ + Sbjct: 189 EMVHRVEMLLSGRSLELVDDLTRKMKAASKDMAYEQAAAYRDQIRAVRKTVEGQAAVIHD 248 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DK 297 D L + F G+ FF + +++ FL QFY + Sbjct: 249 NRDRDVIGLAETGQGLGLGLLFVRQGRLLDQKQFFWPGLTLDEGPEVVESFLGQFYGPGR 308 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P +++ E EE+ L E+ + + EK+ + + Sbjct: 309 FIPSTVVVPMELEESPLPEVLTERGGASVRIVAPRNTQEKQLLG--------IARNVAAR 360 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + + I + LP P RIE D SH+ G VV + + R + Sbjct: 361 AVEAAETISSRLQRVLRLPEEPVRIECVDASHLGGTDMRVGQVVFEDGRRNPDASRLYAF 420 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + D L +++ S P WPD+V++DGG+GQ+S Sbjct: 421 PELEGAGDDYA-------------------ALAAWARRRMESGPPWPDLVLIDGGRGQIS 461 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGME---KFFVKKGEALVLNMRDPILYFIQRLR 534 A + L + E + SIAKG R AG F + + L P L F+Q++R Sbjct: 462 AVEKGLAECTEECGWELASIAKGESRRAGELGDVIFRPGRVNPMPLKPGSPELLFLQKIR 521 Query: 535 DEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 D AHRF + R+ RKKA S L + GIGP R+L F +++ + + P T+ + Sbjct: 522 DAAHRFVLGRQRRARKKAVLSSELTSLPGIGPRTARILWDRFESLEAMLEADPGTIGGLS 581 Query: 594 GISKKIACKIYNHFH 608 GI + A KI+ Sbjct: 582 GIGPRRAEKIHAALQ 596 >gi|329667469|gb|AEB93417.1| excinuclease ABC subunit C [Lactobacillus johnsonii DPC 6026] Length = 600 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 174/622 (27%), Positives = 286/622 (45%), Gaps = 46/622 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+ PG Y M D+ G V+YVGK+ NL+ R++SY S R ++ +I + Sbjct: 9 KLKLLPDKPGCYLMKDVNGNVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVREIRDFDII 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 ++ E+ LLE +IK+ +P +N+ L+ +PYI IT+ + P G Y Sbjct: 68 TVSSDKESFLLEITLIKKYQPYYNVQLKQGTGYPYIEITN-ERDPQTRLTSIVHKDHGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A + T+ +Q+ + LR C H+ RPCL + + +C G C E+ Y Sbjct: 127 FGPYPNVYAAQATLKFIQKVWPLRRCTG----HQGRPCLYYHMGQCLGACFKEVPKSTYD 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + + K+FL+G +K+ + M QA++ ++E A RD+L + I N Sbjct: 183 AQIRKIKRFLNGDIAQVKQDLTEKMTQASMDLEFERAAEIRDQLKYIEQTVEKQKIISND 242 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F+ Y +K+ IQ F + T + F+ QFY + Sbjct: 243 HTQRDIFNFYVDKSWISIQIFFLRQAKLLRRETRLFPLTDTNDPQDAFVSFIAQFYGQRN 302 Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352 P+ +L+ + SL E+ KV + P++G+K+ ++E A NA Sbjct: 303 RVLPKEVLVPAGIDNESLSEVL-------KVPVRTPQRGQKKALLEMAHDNAKLKLDEKF 355 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + K+ LP+ RIE +D+SHI G V +VV + K++Y Sbjct: 356 RLLELGNRKTKGAQKEIFDALGLPYG-HRIESFDHSHIQGADPVSALVVFTDGEADKHEY 414 Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 RK+ L D+ R V+ RR+S+L+K + + PD++++D Sbjct: 415 RKYKLKGEVEHQNAADEVGNTREVVRRRYSRLLKEHKKM--------------PDLILMD 460 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEA---LVLNMRDPI 526 GG+ Q+ A VL+ + I + + K F KGE + L+ + Sbjct: 461 GGQIQVEACLDVLRN-ELNVNIPVAGMVKDDHHRTNHLIFGDPTKGEELKLIPLDPKSEG 519 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 Y + R++DE HRFAIT HR+ K A S LDEI GIGP + LL+ FG++K I +S Sbjct: 520 FYLMTRIQDEVHRFAITFHRRTHAKNALSSKLDEIKGIGPKSRNKLLRKFGSLKKIKEAS 579 Query: 586 PETLASIEGISKKIACKIYNHF 607 + L G++ A + Sbjct: 580 VDELREA-GLTLPQAQTVKLSL 600 >gi|300727533|ref|ZP_07060924.1| excinuclease ABC, C subunit [Prevotella bryantii B14] gi|299775236|gb|EFI71837.1| excinuclease ABC, C subunit [Prevotella bryantii B14] Length = 609 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 166/622 (26%), Positives = 298/622 (47%), Gaps = 48/622 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 MPE PG YQ D G ++YVGKA L+ R+ +Y H + ++S+I+NI +TV Sbjct: 19 NMPEKPGSYQFYDSEGTIIYVGKAKKLKSRVSTYFHKEVDRFKTKVLVSKIHNISYTVVN 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE ++IK+ P++N+LL+D K++P I +T+ P ++K R + G+Y+GP Sbjct: 79 TEEDALLLENSLIKKYNPKYNVLLKDGKTYPSICVTN-EYFPRIFKTRTINKKFGTYYGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 + + ++ ++ +++ + R+C + V + + +PCL + I C PC + S E Sbjct: 138 YPHITSMYAVLDIIKKVYKPRTCRFPITREGVLQGKYKPCLEYHIHNCGAPCINKQSYED 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y E + +A++ L G ++E + M + +E A ++ + L+ ++ + Sbjct: 198 YQENIRQAREILKGNTRKVEEFLYHLMQKNAELLKFEVAEKYKKKYLLLNDFVAKSEVVS 257 Query: 240 NRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + +D ++ + A I G + TF K + T+ ++L + Sbjct: 258 HTIDDVDVFTITDDDNHKNAYINYIHVKNGTINQSFTFEYKRKLDETDEELLITAIPDIR 317 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 ++ E + + VP++G+K ++E + +N + Sbjct: 318 QRFHSQAKEIIVPFEMEWKI----------KNAEFFVPQRGDKHHLLELSEMNGKQYKFD 367 Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 +L E ++ K L +P IE +DNS+I G AV +V Sbjct: 368 RLKQAEKLNPEQKQTRLMTQLKKALKLDKLPYHIECFDNSNISGSDAVAGCIVYKGMKPS 427 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 + YRK+N+ V DD A M+ V+ RR++++++ + PD++I Sbjct: 428 RKDYRKYNIKT--VVGPDDYASMQEVVRRRYTRMVEEK--------------TPLPDLII 471 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 DGGKGQ+ + V+ + + I I +AK + E + + + + + Sbjct: 472 TDGGKGQMDVVRQVI-EGELHLNIPIAGLAKNDRHRT-NELLYGWPPQVIGIKTDSELFR 529 Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 + +++DE HR+AIT HR +R K A +S LD+I G GP K L+L+ TVK I + + Sbjct: 530 VLTQIQDEVHRYAITFHRDKRSKHALHSELDDIKGFGPKSKELILKKLKTVKSIKEADIQ 589 Query: 588 TLASIEGISKKIACKIYNHFHK 609 L SI G SK A +Y+HFH+ Sbjct: 590 KLTSILGPSK--AEILYHHFHE 609 >gi|227512147|ref|ZP_03942196.1| excinuclease ABC subunit C [Lactobacillus buchneri ATCC 11577] gi|227084541|gb|EEI19853.1| excinuclease ABC subunit C [Lactobacillus buchneri ATCC 11577] Length = 589 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 172/609 (28%), Positives = 278/609 (45%), Gaps = 43/609 (7%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M DI G+++YVGKA NL+ R++SY ++H + ++S+I + +T T+ EA LLE Sbjct: 1 MKDINGKIIYVGKAKNLKNRVRSYF-KSSHEGKTARLVSEIADFETIITSTDKEAFLLEI 59 Query: 75 NMIKRLKPRFNILLRDDKS-FPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEK 133 +I++ +P FNI L+ S +PYI IT+ + P + YFGP+ +V A E+ Sbjct: 60 TLIQKHRPYFNIKLKQGHSGYPYIKITN-ERDPQIKIVNTLLKDGAYYFGPYPNVYAAEE 118 Query: 134 TINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSG 193 T+N LQ+ + LR C RPCL + + +C G C + Y + K FL+G Sbjct: 119 TVNFLQKVYPLRRCNGFQ----NRPCLYYHMGQCLGACFKVVPEAVYDRQIKRIKSFLNG 174 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHN 250 + K+ +A+ M A+ YE A RD + + I + D F+ Y N Sbjct: 175 NVGHAKQMLAKRMEDASANMAYERAAEIRDLIKYIEITVEKQKIISHDNTPRDIFNYYMN 234 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAE 310 K IQ F + ++ + ++ P+ IL+ Sbjct: 235 KGWLSIQVFFIRQSRLMKREKRLFPIITDPEEEMVSFISQFYKQKNQILPKEILVPSSLP 294 Query: 311 ETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLSTEISHQMIL 366 + + PK+G+KR ++E A NA E + Sbjct: 295 SD------VVSSVVDDIPVRTPKRGQKRDLLEMAGKNAQLVLEEKFRLLELDESKTTGAM 348 Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426 K+ T +P ++E +D+SHI G V MVV + KN YRK+ L V D Sbjct: 349 KELTDAMGIP-EGHKVEAFDHSHIQGADLVSAMVVFVDGQPNKNLYRKYKLKT--VDHAD 405 Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV-LKK 485 + A R V+ RR+++L+K PD++++DGG Q++A + V + + Sbjct: 406 EAASTREVIRRRYTRLLKEH--------------AQMPDLILMDGGTIQMNAVKDVLVNE 451 Query: 486 LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545 L ++ I + + K + F L L+ + Y +QR++DE HRFAIT H Sbjct: 452 LGLD--IPVGGMVKNEHHQTA-DLLFGDSDTPLHLDPKSQGFYLLQRIQDEVHRFAITYH 508 Query: 546 RKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 RK K + S LD I G+GP + LL+ FG++K IS + + L ++ GIS+ +A I Sbjct: 509 RKVHAKNSLGSRLDSIAGVGPKTRNKLLRKFGSLKKISAAPVDDLKAL-GISETVAQTIK 567 Query: 605 NHFHKNTSH 613 K + Sbjct: 568 FSLSKIDAE 576 >gi|227889848|ref|ZP_04007653.1| excinuclease ABC subunit C [Lactobacillus johnsonii ATCC 33200] gi|227849712|gb|EEJ59798.1| excinuclease ABC subunit C [Lactobacillus johnsonii ATCC 33200] Length = 600 Score = 432 bits (1110), Expect = e-118, Method: Composition-based stats. Identities = 175/622 (28%), Positives = 286/622 (45%), Gaps = 46/622 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+ PG Y M DI G V+YVGK+ NL+ R++SY S R ++ +I + Sbjct: 9 KLKLLPDKPGCYLMKDINGNVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVREIRDFDII 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 ++ E+ LLE +IK+ +P +N+ L+ +PYI IT+ + P G Y Sbjct: 68 TVSSDKESFLLEITLIKKYQPYYNVQLKQGTGYPYIEITN-ERDPQTRLTSIVHKDHGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A + T+ +Q+ + LR C H+ RPCL + + +C G C E+ Y Sbjct: 127 FGPYPNVYAAQATLKFIQKVWPLRRCTG----HQGRPCLYYHMGQCLGACFKEVPKSTYD 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + + K+FL+G +K+ + M QA++ ++E A RD+L + I N Sbjct: 183 AQIRKIKRFLNGDITQVKQDLTEKMTQASMDLEFERAAEIRDQLKYIEQTVEKQKIISND 242 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F+ Y +K+ IQ F + T + F+ QFY + Sbjct: 243 HTQRDIFNFYVDKSWISIQIFFLRQAKLLRRETRLFPLTDTNDPQDAFVSFIAQFYGQRN 302 Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352 P+ +L+ + SL E+ KV + P++G+K+ ++E A NA Sbjct: 303 RVLPKEVLVPAGIDNESLSEVL-------KVPVRTPQRGQKKALLEMAHDNAKLKLDEKF 355 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + K+ LP+ RIE +D+SHI G V +VV + K++Y Sbjct: 356 RLLELGNRKTKGAQKEIFDALGLPYG-HRIESFDHSHIQGADPVSALVVFTDGEADKHEY 414 Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 RK+ L D+ R V+ RR+S+L+K + + PD++++D Sbjct: 415 RKYKLKGEVEHQNAADEVGNTREVVRRRYSRLLKEHKKM--------------PDLILMD 460 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEA---LVLNMRDPI 526 GG+ Q+ A VL+ + I + + K F KGE + L+ + Sbjct: 461 GGQIQVEACLDVLRN-ELNVNIPVAGMVKDDHHRTNHLIFGDPTKGEELKLIPLDPKSEG 519 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 Y + R++DE HRFAIT HR+ K A S LDEI GIGP + LL+ FG++K I +S Sbjct: 520 FYLMTRIQDEVHRFAITFHRRTHAKNALSSKLDEIKGIGPKSRNKLLRKFGSLKKIKEAS 579 Query: 586 PETLASIEGISKKIACKIYNHF 607 + L G++ A + Sbjct: 580 VDELREA-GLTLPQAQTVKLSL 600 >gi|62185404|ref|YP_220189.1| excinuclease ABC subunit C [Chlamydophila abortus S26/3] gi|81312446|sp|Q5L553|UVRC_CHLAB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|62148471|emb|CAH64241.1| putative nuclease [Chlamydophila abortus S26/3] Length = 604 Score = 432 bits (1110), Expect = e-118, Method: Composition-based stats. Identities = 176/607 (28%), Positives = 293/607 (48%), Gaps = 38/607 (6%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFT 61 + +P PGVY M D +G VLY+GKA NL+ RI +Y + + RI ++ + +I Sbjct: 8 PKLIPASPGVYLMKDSSGEVLYIGKAKNLRNRISTYFRKDGDSRERIPFLMKKTTDIETI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS---STIQ 118 + E EA LLE N+IK+ P++N+LL+DDK+F + I+ H P + R S+ + Sbjct: 68 LVSNETEAFLLENNLIKKYHPKYNVLLKDDKTFFCLAISLTHLWPKIDVVRTKAVTSSKK 127 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 FGP+ S +A + + + F LR+C++ F R RPC+L+++KRC PC S E Sbjct: 128 QIIFGPYVSAEACRTLLEVISQWFPLRTCSNREFASRKRPCILYEMKRCLAPCVNLCSHE 187 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 +Y + + +A FL G + + + +++ +A+ ++ +E A ++ L + Sbjct: 188 EYEQTLDKAVLFLKGQISEIVQDLEKSIEKASKEQKFEQAGMYYRTLKLIQQAMEKQHVE 247 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + +D LY I G+ G F +++ + S+ L+ + Sbjct: 248 KFHFQNIDAIGLYRKYQKTVITVLTIRSGKLLGARHFPFSENAQEDADVLSSFILQYYTN 307 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P+ IL L ++ PK G R+++ A NA Sbjct: 308 QPQTPKEILTPIPLNIPDLPS---LLNKDTPPQLRSPKTGYGRELLNLAKNNAQVHAETT 364 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 + S + ++ K P P RIE YDN+H+ G AVG +V + YR F Sbjct: 365 I---QSSALPYEELKKILKSPDYPYRIECYDNAHLQGSHAVGVYIVYENDALSPKDYRTF 421 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 ++ + +D A VL RRF L S PD++++DGG+ Q Sbjct: 422 SISSS---AYNDLAAFHEVLSRRFISLT-----------------SSIPDMILIDGGRTQ 461 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAG---MEKFFVKK-GEALVLNMRDPILYFIQ 531 + A+ LK+LN+ I ++SIAK +G EK F + ++L +L F Q Sbjct: 462 YAQAKKTLKELNLTG-IQVVSIAKEAGNHSGSLKNEKLFCDTFPQGVLLPPTSKLLQFFQ 520 Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +LRDEAHRFA++ HRK+R K P ++I GIG ++++ LLQ F + + + ++S L + Sbjct: 521 KLRDEAHRFALSRHRKKRHKDFLLPKEKIPGIGEIKRKRLLQKFKSWEQVMKASQGELEA 580 Query: 592 IEGISKK 598 I G++KK Sbjct: 581 IPGLTKK 587 >gi|268319616|ref|YP_003293272.1| UvrABC system protein C [Lactobacillus johnsonii FI9785] gi|262397991|emb|CAX67005.1| UvrABC system protein C [Lactobacillus johnsonii FI9785] Length = 600 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 175/622 (28%), Positives = 286/622 (45%), Gaps = 46/622 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+ PG Y M DI G V+YVGK+ NL+ R++SY S R ++ +I + Sbjct: 9 KLKLLPDKPGCYLMKDINGNVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVREIRDFDII 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 ++ E+ LLE +IK+ +P +N+ L+ +PYI IT+ + P G Y Sbjct: 68 TVSSDKESFLLEITLIKKYQPYYNVQLKQGTGYPYIEITN-ERDPQTRLTSIVHKDHGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A + T+ +Q+ + LR C H+ RPCL + + +C G C E+ Y Sbjct: 127 FGPYPNVYAAQATLKFIQKVWPLRRCTG----HQGRPCLYYHMGQCLGACFKEVPKSTYD 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + + K+FL+G +K+ + M QA++ ++E A RD+L + I N Sbjct: 183 AQIRKIKRFLNGDIAQVKQDLTEKMTQASMDLEFERAAEIRDQLKYIEQTVEKQKIISND 242 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F+ Y +K+ IQ F + T + F+ QFY + Sbjct: 243 HTQRDIFNFYVDKSWISIQIFFLRQAKLLRRETRLFPLTDTNDPQDAFVSFIAQFYGQRN 302 Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352 P+ +L+ + SL E+ KV + P++G+K+ ++E A NA Sbjct: 303 RVLPKEVLVPAGIDNESLSEVL-------KVPVRTPQRGQKKALLEMAHDNAKLKLDEKF 355 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + K+ LP+ RIE +D+SHI G V +VV + K++Y Sbjct: 356 RLLELGNRKTKGAQKEIFDALGLPYG-HRIESFDHSHIQGADPVSALVVFTDGEADKHEY 414 Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 RK+ L D+ R V+ RR+S+L+K + + PD++++D Sbjct: 415 RKYKLKGEVEHQNAADEVGNTREVVRRRYSRLLKEHKKM--------------PDLILMD 460 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEA---LVLNMRDPI 526 GG+ Q+ A VL+ + I + + K F KGE + L+ + Sbjct: 461 GGQIQVEACLDVLRN-ELNVNIPVAGMVKDDHHRTNHLIFGDPTKGEELKLIPLDPKSEG 519 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 Y + R++DE HRFAIT HR+ K A S LDEI GIGP + LL+ FG++K I +S Sbjct: 520 FYLMTRIQDEVHRFAITFHRRTHAKNALSSKLDEIKGIGPKSRNKLLRKFGSLKKIKEAS 579 Query: 586 PETLASIEGISKKIACKIYNHF 607 + L G++ A + Sbjct: 580 VDELREA-GLTLPQAQTVKLSL 600 >gi|329296607|ref|ZP_08253943.1| excinuclease ABC subunit C [Plautia stali symbiont] Length = 551 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 193/554 (34%), Positives = 302/554 (54%), Gaps = 30/554 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY+M D G V+YVGKA +L+KR+ SY + + + ++S I+NI TVT Sbjct: 13 TVTSQPGVYRMYDATGTVIYVGKAKDLKKRLSSYFRTQVGSRKTEVLVSNIHNIDVTVTH 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLE N IK +PR+N+LLRDDKS+PYI ++ P L HR + +G YFGP Sbjct: 73 TETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLS-GDPHPRLAMHRGAKHAKGEYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEF 183 F + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y + Sbjct: 132 FPNGYAVRETLALLQKVFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYAQQ 191 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NR 241 + FL+G + + ++ + M QA++ +E A RD++ A+ I + Sbjct: 192 TDYVRLFLAGKDDQVINQLVQRMEQASVGLRFEEAARLRDQIQAVRRITEKQFVSNQGDD 251 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----K 297 +D + ++ +AC+ F G+ G+ ++F K +++ +++ F+ QFY + Sbjct: 252 LDVMGVAYDAGMACLHVLFIRQGKVLGSRSYFPKVPADTELTEVMPTFVGQFYLQGSEAR 311 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P +ILL E LL S + G KV I +G++ + ++ A NA + T +L+ Sbjct: 312 TLPADILLDFNLPERELLAASLSELVGRKVSIQSKPRGDRARYLKLARTNAATALTTRLA 371 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + Q L L R+E +D SH MG + VV +G ++ YR++N+ Sbjct: 372 QHSTIQQRLAALAAFLKLE-QINRMECFDISHTMGEQTIASCVVFNRDGPLRADYRRYNI 430 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + DD A M VL RR+ + ++ E+ PDV+++DGGKGQL+ Sbjct: 431 EG--ITPGDDYAAMNQVLRRRYGKALEPEK---------------IPDVILIDGGKGQLA 473 Query: 478 AAQGVLKKLNV---ENRITIISIAKGPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQRL 533 AQ V +L+V +NR ++ +AKG R AG+E F +GE + L P L+ IQ + Sbjct: 474 QAQQVFAELDVSWDKNRPILLGVAKGSDRKAGLETLLFAAEGEGVSLPPDSPALHVIQHI 533 Query: 534 RDEAHRFAITTHRK 547 RD+AH AI+ HRK Sbjct: 534 RDDAHNHAISGHRK 547 >gi|212550898|ref|YP_002309215.1| excinuclease ABC subunit C [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549136|dbj|BAG83804.1| excinuclease ABC subunit C [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 602 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 180/619 (29%), Positives = 288/619 (46%), Gaps = 51/619 (8%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVTC 64 +PEC GVY D G ++Y+GKA NL+KR+ SY H + + ++ ++ NI + V Sbjct: 16 LPECSGVYMYSDENGIIIYIGKAKNLKKRVSSYFKKTTHDNLKTKILVQKVRNIDYLVVE 75 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 + +ALLLE N+IK+ +P++NILL+DDK++P+I I P + R Y+GP Sbjct: 76 SGEDALLLENNLIKKYQPKYNILLKDDKTYPWIAI-KNESFPRIQLSRRKVKNNSRYYGP 134 Query: 125 FASVDAVEKTINSLQRTFFLRSCAD-----SVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 + SV V+ + + + +R+C ++ R + CL + IK+C GPC G + ++ Sbjct: 135 YTSVSNVKCLLQLICSLYPIRTCKYVLSQVNIKRKKFHVCLQYHIKKCLGPCIGMQTEKE 194 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237 Y E + ++K L G + + + M + +E A I R + L + + Sbjct: 195 YDENIRLSEKILKGKYREVSRLLYQKMINLAAEMQFEKAEIVRKQYVMLKDYSSKSIVVS 254 Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 N +D +S N A I G T K + + IL+ + + Sbjct: 255 QSLNNVDVYSFDENAKSAYINYLHIIDGAIVNGYTIEYKKKLDESKETILAMGITELRLR 314 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 ++ E + + T+PK+GEK+K++ + N + +L Sbjct: 315 FKSKAKEIIVPFYPEIEID----------NLIFTIPKRGEKKKLLCLSEKNVKQYKLDQL 364 Query: 357 ST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + E ILK + L +P IE +DNS+I G V VV + K Sbjct: 365 NKADKLNSEQRSIRILKILQNELHLKKLPLHIECFDNSNIQGVYPVSSCVVFKKANPSKK 424 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YR FN+ V +D M + RR+++LI+ + L PD++++D Sbjct: 425 DYRHFNIKT--VNGPNDFRSMYETVLRRYNRLIEENQPL--------------PDLIVID 468 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGKGQL A+ LK++ + +I II+IAK + E +F L L+ L I Sbjct: 469 GGKGQLHASVDALKEIGLYEQIPIIAIAKRLE-----EIYFPNDPLPLYLDKNSEGLKLI 523 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISR-SSPET 588 Q LRDEAHRF I HR +R + S LD I GIG + K LL+ + + K I S E Sbjct: 524 QYLRDEAHRFGINFHRNQRSRNQLISKLDSIKGIGVVTKEKLLRKYKSTKQIKEDVSQEE 583 Query: 589 LASIEGISKKIACKIYNHF 607 + S+ I KK A ++ NH Sbjct: 584 IISL--IGKKKAERLLNHL 600 >gi|227893470|ref|ZP_04011275.1| excision endonuclease subunit UvrC [Lactobacillus ultunensis DSM 16047] gi|227864695|gb|EEJ72116.1| excision endonuclease subunit UvrC [Lactobacillus ultunensis DSM 16047] Length = 600 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 174/622 (27%), Positives = 287/622 (46%), Gaps = 46/622 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +PE PG Y M DI G V+YVGK+ NL+ R++SY S R ++ +I + Sbjct: 9 KLKLLPEKPGCYLMKDINGTVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVREIRDYDII 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T+ EA LLE +IK+ +P +N+ L+ +PYI IT +H P G Y Sbjct: 68 TVSTDKEAFLLEITLIKKYQPYYNVQLKQGTGYPYIEITREHD-PQTRLTSIVHKDGGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A + T+ +Q+ F LR C RPCL + + +C G C ++ ++Y Sbjct: 127 FGPYPNVYAAQATLKFIQKVFPLRRCHGYQ----GRPCLYYHMGQCLGACFKKVPQKEYE 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 E + + K FL+G +K+ + + M A+ ++E A RD+L + I N Sbjct: 183 EQIKKIKGFLNGDIGWVKQDLTQKMETASQNLEFERAAEIRDQLKYIEETVEKQKIISND 242 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 + D F+ Y +K+ IQ F + T + + F+ QFY + Sbjct: 243 NTQRDIFNYYVDKSWISIQIFFLRQAKLLRRETRMFPLTDTTDPEDTFTSFIVQFYGQRN 302 Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P+ +L+ + + +L E+ KV + P++G+K+ +++ A NA K Sbjct: 303 RVLPKEVLIPDGFDNATLAEVL-------KVPVRTPQRGQKKSLLDMAKDNAKLKIEDKF 355 Query: 357 S----TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + K+ LP+ IE +D+SHI G V +VV + K Y Sbjct: 356 RLLELGNRKTKGAQKEIFDALGLPYG-HIIESFDHSHIQGADPVSALVVFKDGEPDKTSY 414 Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 RK+ L D+ R V+ RR+ +L++ + + PD++++D Sbjct: 415 RKYKLKGEVEHQNGGDEVRNTREVVRRRYGRLLREHKKM--------------PDLILMD 460 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEA---LVLNMRDPI 526 GG+ Q+ A + VL+ + I + + K K F G + LN + Sbjct: 461 GGQIQVDACEDVLRN-ELNLNIPVAGMVKDDKHRTNHLLFGDPINGIPLKLIPLNPKSEG 519 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 Y + R++DE HRFAIT HR+R K A S LD I GIGP + LL++FG++K I +S Sbjct: 520 FYLMTRIQDEVHRFAITFHRRRHAKNALSSRLDSIKGIGPKSRNKLLRNFGSLKKIKEAS 579 Query: 586 PETLASIEGISKKIACKIYNHF 607 + L + G++ A + Sbjct: 580 IDELRAA-GLTLPQAQTVKLTL 600 >gi|42518995|ref|NP_964925.1| excinuclease ABC subunit C [Lactobacillus johnsonii NCC 533] gi|81667898|sp|Q74JN8|UVRC_LACJO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|41583282|gb|AAS08891.1| excinuclease ABC subunit C [Lactobacillus johnsonii NCC 533] Length = 600 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 174/622 (27%), Positives = 286/622 (45%), Gaps = 46/622 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+ PG Y M D+ G V+YVGK+ NL+ R++SY S R ++ +I + Sbjct: 9 KLKLLPDKPGCYLMKDVNGNVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVREIRDFDII 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 ++ E+ LLE +IK+ +P +N+ L+ +PYI IT+ + P G Y Sbjct: 68 TVSSDKESFLLEITLIKKYQPYYNVQLKQGTGYPYIEITN-ERDPQTRLTSIVHKDHGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A + T+ +Q+ + LR C H+ RPCL + + +C G C E+ Y Sbjct: 127 FGPYPNVYAAQATLKFIQKVWPLRRCTG----HQGRPCLYYHMGQCLGACFKEVPKSTYD 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + + K+FL+G +K+ + M QA++ ++E A RD+L + I N Sbjct: 183 AQIRKIKRFLNGDIAQVKQDLTEKMTQASMDLEFERAAEIRDQLKYIEQTVEKQKIISND 242 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F+ Y +K+ IQ F + T + F+ QFY + Sbjct: 243 HTQRDIFNFYVDKSWISIQIFFLRQAKLLRRETRLFPLTDTNDPQDAFVSFIAQFYGQRN 302 Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352 P+ +L+ + SL E+ KV + P++G+K+ ++E A NA Sbjct: 303 RVLPKEVLVPAGMDNESLSEVL-------KVPVRTPQRGQKKALLEMAHDNAKLKLDEKF 355 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + K+ LP+ RIE +D+SHI G V +VV + K++Y Sbjct: 356 RLLELGNRKTKGAQKEIFDALGLPYG-HRIESFDHSHIQGADPVSALVVFTDGEADKHEY 414 Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 RK+ L D+ R V+ RR+S+L+K + + PD++++D Sbjct: 415 RKYKLKGEVEHQNAADEVGNTREVVRRRYSRLLKEHKKM--------------PDLILMD 460 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEA---LVLNMRDPI 526 GG+ Q+ A VL+ + I + + K F KGE + L+ + Sbjct: 461 GGQIQVEACLDVLRN-ELNVNIPVAGMVKDDHHRTNHLIFGDPTKGEELKLIPLDPKSEG 519 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 Y + R++DE HRFAIT HR+ K A S LDEI GIGP + LL+ FG++K I +S Sbjct: 520 FYLMTRIQDEVHRFAITFHRRTHAKNALSSKLDEIKGIGPKSRNKLLRKFGSLKKIKEAS 579 Query: 586 PETLASIEGISKKIACKIYNHF 607 + L G++ A + Sbjct: 580 VDELREA-GLTLPQAQTVKLSL 600 >gi|294785342|ref|ZP_06750630.1| excinuclease ABC subunit C [Fusobacterium sp. 3_1_27] gi|294487056|gb|EFG34418.1| excinuclease ABC subunit C [Fusobacterium sp. 3_1_27] Length = 589 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 188/613 (30%), Positives = 310/613 (50%), Gaps = 39/613 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PGVY M +V+YVGKA NL+ R+ SY + + + ++ I +I F +T Sbjct: 7 DIPESPGVYLMK-KNDKVIYVGKAKNLKNRVSSYFNRVHENEKTNELVKNIEDIEFFLTN 65 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST---IQGSY 121 TE++ALLLE N+IK+ P++NILL+D+K++P+I I+ K P++ R + G Y Sbjct: 66 TEIDALLLENNLIKKYSPKYNILLKDEKTYPFIKIS-KEDFPSIKIVRTTKALDIKSGEY 124 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + N L + F +R C + + RPCL + +K C+GPC + E+Y Sbjct: 125 FGPYP--YGAWRLKNILMKLFKIRDCNRDMKKVSPRPCLKYYMKSCTGPCVYKDIKEEYN 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + V K+ L G L ++ MN+A+ D+E +II+R+++ L I + Y R Sbjct: 183 KDVENLKQVLRGNTSKLINELTALMNKASQDMDFEKSIIYREQIKELKAIASSQIIQYER 242 Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F + A I G+ G + + ++ T+ I +Y+ Sbjct: 243 ELDEDIFVFKTILDKAFICVLNMRDGKILGKSSTSIDLKNKITDN-IYEAIFMSYYSKHI 301 Query: 299 CPENILLSEEAEET--SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P++++L E E +++ ++ K + ++++++ A N R Sbjct: 302 LPKSLVLDAEYENELSIVVKALTNEESKKKEFHFPKIKSRRKELLDMAYKNLERDLETYF 361 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 S + + + +KD L P++IE +D S+I G AV M V E + +YRKF Sbjct: 362 SKKDTIEKGIKDLHDILELKRFPRKIECFDISNIQGKDAVASMSVSIEGRAARKEYRKFK 421 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + D DD +MMR V+ERR+S+L + +PDV+++DGG GQ+ Sbjct: 422 IRCKDTP--DDFSMMREVIERRYSKLADKD----------------FPDVILIDGGLGQI 463 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 ++A VL+KL + ++S+AK + E + + L+ L QR+RDE Sbjct: 464 NSAGEVLEKLEKIHLSELLSLAKRDE-----EIYKYGESIPYSLSKDMEALKIFQRVRDE 518 Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 AHRF IT HRK R K S LD+INGIG +R++ LL FG++ I +++ E L I + Sbjct: 519 AHRFGITYHRKLRSKRIISSELDKINGIGEVRRKKLLTKFGSISGIKKANIEELKEI--V 576 Query: 596 SKKIACKIYNHFH 608 +K+A +I N Sbjct: 577 PEKVALEIKNKIR 589 >gi|237744870|ref|ZP_04575351.1| excinuclease ABC subunit C [Fusobacterium sp. 7_1] gi|229432099|gb|EEO42311.1| excinuclease ABC subunit C [Fusobacterium sp. 7_1] Length = 589 Score = 431 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 187/613 (30%), Positives = 310/613 (50%), Gaps = 39/613 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE GVY M +V+YVGKA NL+KR+ SY + + + + ++ I +I F +T Sbjct: 7 DIPESSGVYLMK-KNNKVIYVGKAKNLKKRVSSYFNRVHESEKTNELVKNIEDIEFFLTN 65 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST---IQGSY 121 TE +ALLLE N+IK+ P++NILL+D+K++P+I I+ K P + R + G Y Sbjct: 66 TETDALLLENNLIKKYSPKYNILLKDEKTYPFIKIS-KEDFPNIKIVRTTKALDIKSGEY 124 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + N L + F +R C + + RPCL + +K C+GPC + E+Y Sbjct: 125 FGPYP--YGAWRLKNILMKLFKIRDCNRDMKKLSPRPCLKYYMKSCTGPCVYKDIKEEYN 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + V K+ L G L ++ MNQA+ D+E +II+R+++ L I++ Y R Sbjct: 183 KNVENLKQVLRGNTSKLINELTTLMNQASQDMDFEKSIIYREQIKELKSIESSQIIQYER 242 Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F + A I G+ G + + ++ T+ I +Y+ Sbjct: 243 ELDEDIFVFKTILDKAFICVLNMRDGKILGKSSTAIDLKNKITDN-IYEAIFMSYYSKHI 301 Query: 299 CPENILLSEEAEET--SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P++++L E E +++ ++ K + ++++++ A N R Sbjct: 302 LPKSLVLDAEYENELSVVVKALTNEESKKKEFHFPKIKSRRKELLDMAYKNLERDLESYF 361 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 S + + + +KD L P++IE +D S+I G AV M V E + +YRKF Sbjct: 362 SKKDTIEKGIKDLHDILELKRFPRKIECFDISNIQGKDAVASMSVSIEGRAARKEYRKFK 421 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + D DD +MMR V+ERR+S+L + +PDV+++DGG GQ+ Sbjct: 422 IRCKDTP--DDFSMMREVIERRYSKLADRD----------------FPDVILIDGGLGQI 463 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 ++A VL++L + ++S+AK + E + + L+ L QR+RDE Sbjct: 464 NSAGEVLERLGKIHLSELLSLAKRDE-----EIYKYGESVPYSLSKDMEALKIFQRVRDE 518 Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 AHRF IT HRK R K S LD+++GIG +R++ LL FG++ I ++S + L I I Sbjct: 519 AHRFGITYHRKLRSKRIISSELDKLDGIGEVRRKKLLTKFGSISGIKKASIDELKEI--I 576 Query: 596 SKKIACKIYNHFH 608 +K+A +I N Sbjct: 577 PEKVALEIKNKIR 589 >gi|297205870|ref|ZP_06923265.1| excision endonuclease subunit UvrC [Lactobacillus jensenii JV-V16] gi|297148996|gb|EFH29294.1| excision endonuclease subunit UvrC [Lactobacillus jensenii JV-V16] Length = 603 Score = 431 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 172/622 (27%), Positives = 276/622 (44%), Gaps = 46/622 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +PE PG Y M +I G V+YVGK+ NL+ R++SY S R ++ +I + Sbjct: 12 KLKLLPEQPGCYLMKNINGTVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVKEIADFDII 70 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 ++ E+ LLE +IK+ +P +N+ L+ +PYI IT+ K P G Y Sbjct: 71 TVTSDKESFLLEITLIKKYQPYYNVQLKQGTGYPYIEITN-EKDPQTRLTSIVHKDNGYY 129 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A + T+ +Q+ + LR C H+ RPCL + + +C G C E+ KY Sbjct: 130 FGPYPNVYAAQATLRFIQKVWPLRRCNG----HQGRPCLYYHMGQCLGACFQEVPRSKYE 185 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + + K+FL+G +K+++ M A+ ++E A RD+L + I N Sbjct: 186 AQIAKIKRFLNGDITQVKQELTEKMQIASGNLEFERAAEIRDQLRYIEQTVEKQKIISND 245 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F+ Y +K+ +Q F + T S F+ QFY K Sbjct: 246 HTQRDIFNFYVDKSWISVQIFFLRQAKLLRRETKMFPLMDLSDPKDEFMSFIVQFYNQKN 305 Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352 P +L+ E+ + +L E+ K P++G KR +++ A NA Sbjct: 306 RILPREVLVPEDLDNGNLSEVLGVKVRT-------PQRGTKRDLLKMAKDNAKLKLDEKF 358 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + K LP+ IE +D+SHI G V VV + K Y Sbjct: 359 RLLELGNRKTKGAQAEIFKALGLPYG-HIIESFDHSHIQGTDPVSACVVFKDGEPFKTAY 417 Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 RK+ L D+ R V+ RR+S+++K PD++++D Sbjct: 418 RKYKLKGEVEHQNGADEVGNTREVVRRRYSRMLKEH--------------SRLPDLILMD 463 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEALVL---NMRDPI 526 GG+ Q+ A VL+ + I + + K F G+ L L + + Sbjct: 464 GGQIQVDACLDVLRN-ELNCDIPVAGMVKDNHHHTNHLIFGDPINGKPLELIPMDPKSEG 522 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 Y + R++DE HRFAIT HR+ K + S LD I GIGP + LL+ FG++K I +S Sbjct: 523 FYLMTRIQDEVHRFAITFHRQTHAKNSLASKLDGIKGIGPKSRNKLLKKFGSLKKIKDAS 582 Query: 586 PETLASIEGISKKIACKIYNHF 607 E L G++ A + Sbjct: 583 VEELQDA-GLTLPQAQSVKLTL 603 >gi|34763036|ref|ZP_00144011.1| Excinuclease ABC subunit C [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887296|gb|EAA24392.1| Excinuclease ABC subunit C [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 589 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 185/613 (30%), Positives = 309/613 (50%), Gaps = 39/613 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PGVY M +V+YVGKA NL+ R+ SY + + + ++ I +I F +T Sbjct: 7 DIPESPGVYLMK-KNDKVIYVGKAKNLKNRVSSYFNRVHENEKTNELVKNIEDIEFFLTN 65 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST---IQGSY 121 TE++ALLLE N+IK+ P++NILL+D+K++P+I I+ K P++ R + G Y Sbjct: 66 TEIDALLLENNLIKKYSPKYNILLKDEKTYPFIKIS-KEDFPSIKIVRTTKALDIKSGEY 124 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + N L + F +R C + + RPCL + +K C+GPC + E+Y Sbjct: 125 FGPYP--YGAWRLKNILMKLFKIRDCNRDMKKVSPRPCLKYYMKSCTGPCVYKDIKEEYN 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + V K+ L G L ++ M++A+ D+E +II+R+++ L I + Y R Sbjct: 183 KDVENLKQVLRGNTSKLINELTTLMDKASQDMDFEKSIIYREQIKELKAIASSQIIQYER 242 Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F + A I G+ G + + ++ T+ I +Y+ Sbjct: 243 ELDEDIFVFKTILDKAFICVLNMRDGKILGKSSTSIDLKNKITDN-IYEAIFMSYYSKHI 301 Query: 299 CPENILLSEEAEET--SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P++++L E E +++ ++ K + ++++++ A N R Sbjct: 302 LPKSLVLDAEYENELAVVVKALTNEEGKKKEFHFPKIKSRRKELLDMAYKNLERDLETYF 361 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 S + + + +KD L P++IE +D S+I G AV M V E + +YRKF Sbjct: 362 SKKDTIEKGIKDLHDILELKRFPRKIECFDISNIQGKDAVASMSVSIEGRAARKEYRKFK 421 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + D DD +MMR V+ERR+S+L + +PDV+++DGG GQ+ Sbjct: 422 IRCKDTP--DDFSMMREVIERRYSKLADRD----------------FPDVILIDGGLGQI 463 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 ++A VL++L + ++S+AK + E + + L+ L QR+RDE Sbjct: 464 NSAGEVLERLGKIHLSELLSLAKRDE-----EIYKYGESIPYSLSKDMEALKIFQRVRDE 518 Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 AHRF IT HRK R K S LD+INGIG +R++ L FG++ I +++ E L I + Sbjct: 519 AHRFGITYHRKLRSKRIISSELDKINGIGEVRRKKLFTKFGSISGIKKANIEELKEI--V 576 Query: 596 SKKIACKIYNHFH 608 +K+A +I N Sbjct: 577 PEKVALEIKNKIR 589 >gi|239616736|ref|YP_002940058.1| excinuclease ABC, C subunit [Kosmotoga olearia TBF 19.5.1] gi|239505567|gb|ACR79054.1| excinuclease ABC, C subunit [Kosmotoga olearia TBF 19.5.1] Length = 574 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 171/608 (28%), Positives = 291/608 (47%), Gaps = 49/608 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH--THRITHMISQINNIR 59 ++PE PG+Y + G ++Y+GKA L+KR+ SY ++ H + + +I+++ Sbjct: 8 KVRELPEKPGIYLFKNKKGEIIYIGKAKKLRKRVSSYFRASTHEQNGKTRELYQEIDDLE 67 Query: 60 FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG 119 F V TE EALLLEAN+I + KP+FN+LL+D K +PYI I+D P + R +G Sbjct: 68 FIVVPTEKEALLLEANLIYQHKPKFNVLLKDSKRYPYIFISDDE-FPYISITR-IRDRKG 125 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 Y+GP+ S+ V ++ LQR F LRSC D+ + RPC L+ +K CS P GEIS + Sbjct: 126 FYYGPYTSITLVRNLLDLLQRIFKLRSCMDNRDCKKGRPCFLYHLKMCSAPLAGEISHAE 185 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + V FL G +++ ++ R+M + +E A RD L + + + Sbjct: 186 YQKQVRGFMDFLDGKTLDVRRQLERSMQRLAENLQFEKAKEIRDVLVSFDRLYSKQAVDV 245 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 + + + + + G G TF + + + + +Y Sbjct: 246 SES-YTADFIVLDSGIVTLLEVRGGLLLGKLTF------DFPEGNLKDFIQQFYYGQNHR 298 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 +L+ ++ + EI+ +Y + K + L+ A + ++L Sbjct: 299 KPPVLIVPGLNKSEIKEIAEDFEYIGNPRSEEEK---------RLLLIASDNTIEELRIR 349 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + Q LK + L IP+ IE D SH G V +VV K YR++ + Sbjct: 350 LKVQQSLKMAKELLGLNKIPRIIEGVDISHTQGVYTVASVVVFRNGQPDKISYRRYRI-- 407 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 ++ +D +++++ RR+S+ PD++++DGG QL+A Sbjct: 408 TELNEPNDFEALKILMRRRYSK-------------------HPPPDLLLVDGGAPQLAAV 448 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 + L++L + +I I +AK + E F L L+ P+L + +RDE+HR Sbjct: 449 RESLEELGL-KKIDFIGLAKEEE-----EIVFPDNRGRLKLSPDHPVLRLLTTIRDESHR 502 Query: 540 FAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FA+ HR R +K + S LD+I GIGP RKR L+++FG+V I ++S E L + ++K Sbjct: 503 FAVNYHRVLRERKFSTSRLDDIPGIGPKRKRALVRAFGSVTNIKKASKEELMKVIK-NRK 561 Query: 599 IACKIYNH 606 + +I Sbjct: 562 VVEQILAW 569 >gi|256850987|ref|ZP_05556376.1| excinuclease ABC, C subunit [Lactobacillus jensenii 27-2-CHN] gi|260661199|ref|ZP_05862113.1| excinuclease ABC, C subunit [Lactobacillus jensenii 115-3-CHN] gi|282932060|ref|ZP_06337518.1| excinuclease ABC, C subunit [Lactobacillus jensenii 208-1] gi|256616049|gb|EEU21237.1| excinuclease ABC, C subunit [Lactobacillus jensenii 27-2-CHN] gi|260548136|gb|EEX24112.1| excinuclease ABC, C subunit [Lactobacillus jensenii 115-3-CHN] gi|281303827|gb|EFA95971.1| excinuclease ABC, C subunit [Lactobacillus jensenii 208-1] Length = 600 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 172/622 (27%), Positives = 275/622 (44%), Gaps = 46/622 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +PE PG Y M +I G V+YVGK+ NL+ R++SY S R ++ +I + Sbjct: 9 KLKLLPEQPGCYLMKNINGTVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVKEIADFDII 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 ++ E+ LLE +IK+ +P +N+ L+ +PYI IT+ K P G Y Sbjct: 68 TVTSDKESFLLEITLIKKYQPYYNVQLKQGTGYPYIEITN-EKDPQTRLTSIVHKDNGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A + T+ +Q+ + LR C H+ RPCL + + +C G C E+ KY Sbjct: 127 FGPYPNVYAAQATLRFIQKVWPLRRCNG----HQGRPCLYYHMGQCLGACFQEVPRSKYE 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + + K+FL+G +K+++ M A+ ++E A RD+L + I N Sbjct: 183 AQIAKIKRFLNGDITQVKQELTEKMQIASGNLEFERAAEIRDQLRYIEQTVEKQKIISND 242 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F+ Y +K+ +Q F + T S F+ QFY K Sbjct: 243 HTQRDIFNFYVDKSWISVQIFFLRQAKLLRRETKMFPLMDLSDPKDEFMSFIVQFYNQKN 302 Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352 P +L+ E + +L E+ K P++G KR +++ A NA Sbjct: 303 RILPREVLVPEGLDNDNLSEVLGVKVRT-------PQRGTKRDLLKMAKDNAKLKLDEKF 355 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + + LP+ IE +D+SHI G V VV + K Y Sbjct: 356 RLLELGNRKTKGAQAEIFQALGLPYG-HIIESFDHSHIQGTDPVSACVVFKDGEPFKTAY 414 Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 RK+ L D+ R V+ RR+S+++K PD++++D Sbjct: 415 RKYKLKGEVEHQNGADEVGNTREVVRRRYSRMLKEH--------------SQLPDLILMD 460 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEALVL---NMRDPI 526 GG+ Q+ A VL+ + I + + K F G+ L L N + Sbjct: 461 GGQIQVDACLDVLRN-ELNCDIPVAGMVKDNHHHTNHLIFGDPINGKPLELIPMNPKSEG 519 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 Y + R++DE HRFAIT HR+ K + S LD I GIGP + LL+ FG++K I +S Sbjct: 520 FYLMTRIQDEVHRFAITFHRQTHAKNSLASKLDGIKGIGPKSRNKLLKKFGSLKKIKDAS 579 Query: 586 PETLASIEGISKKIACKIYNHF 607 E L G++ A + Sbjct: 580 VEELQDA-GLTLPQAQSVKLTL 600 >gi|328467453|gb|EGF38528.1| excinuclease ABC subunit C [Lactobacillus helveticus MTCC 5463] Length = 600 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 174/619 (28%), Positives = 287/619 (46%), Gaps = 46/619 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +PE PG Y M DI G V+YVGK+ NL+ R++SY + R ++ +I + Sbjct: 9 KLKLLPEKPGCYLMKDINGTVIYVGKSKNLKNRVRSYF-KSMQVGRRAELVREIRDYDII 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T+ EA LLE +IK+ +P +N+ L+ +PYI IT +H P G Y Sbjct: 68 TVSTDKEAFLLEITLIKKYQPYYNVQLKQGTGYPYIEITREHD-PQTRLTSIVCKDGGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A + T+ +Q+ F LR C RPCL + + +C G C ++ ++Y Sbjct: 127 FGPYPNVYAAQATLKFIQKVFPLRRCHGYQ----GRPCLYYHMGQCLGACFKKVPQKEYD 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 E + + K+FL+G +K+ + + M QA+ + ++E A RD+L + I N Sbjct: 183 EQIKKIKRFLNGDIGAVKQDLTQKMEQASEQLEFERAAEIRDQLKYIEETVEKQKIISND 242 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 + D F+ Y +K+ IQ F + T + + F+ QFY K Sbjct: 243 NTQRDIFNYYVDKSWISIQIFFLRQAKLLRRETRMFPLTDTTDPEDAFTSFIVQFYGQKN 302 Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P+ +L+ + +L E+ V + P++G+K+ +++ A NA K Sbjct: 303 RVLPKEVLIPAGFDNDTLAEVL-------TVPVRTPQRGQKKSLLDMAKDNAKLKLDDKF 355 Query: 357 S----TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + K+ LP+ IE +D+SHI G V +VV + K Y Sbjct: 356 RLLELGNRKTKGAQKEIFDALGLPYG-HIIESFDHSHIQGADPVSALVVFKDGEPDKTSY 414 Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 RK+ L D+ R V+ RR+ +L++ + + PD++++D Sbjct: 415 RKYKLKGEVEHQNGGDEVRNTREVVRRRYGRLLREHKKM--------------PDLILMD 460 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEA---LVLNMRDPI 526 GG+ Q+ A + VL+ + I + + K K F G + LN + Sbjct: 461 GGQIQVDACEDVLRN-ELNLNIPVAGMVKDDKHRTNHLLFGDPINGVPLKLIPLNPKSEG 519 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 Y + R++DE HRFAIT HR+R K A S LD I GIGP + LL+ FG++K I +S Sbjct: 520 FYLMTRIQDEVHRFAITFHRRRHAKNALSSRLDSIKGIGPKSRNKLLRKFGSLKKIKEAS 579 Query: 586 PETLASIEGISKKIACKIY 604 + L + G++ A + Sbjct: 580 VDDLRAA-GLTLPQAQTVK 597 >gi|323466678|gb|ADX70365.1| Excision endonuclease subunit UvrC [Lactobacillus helveticus H10] Length = 588 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 175/615 (28%), Positives = 286/615 (46%), Gaps = 46/615 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 MPE PG Y M DI G V+YVGK+ NL+ R++SY + R ++ +I + T Sbjct: 1 MPEKPGCYLMKDINGTVIYVGKSKNLKNRVRSYF-KSMQVGRRAELVREIRDYDIITVST 59 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 + EA LLE +IK+ +P +N+ L+ +PYI IT +H P G YFGP+ Sbjct: 60 DKEAFLLEITLIKKYQPYYNVQLKQGTGYPYIEITREHD-PQTRLTSIVCKDGGYYFGPY 118 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A + T+ +Q+ F LR C RPCL + + +C G C ++ ++Y E + Sbjct: 119 PNVYAAQATLKFIQKVFPLRRCHGYQ----GRPCLYYHMGQCLGACFKKVPQKEYDEQIK 174 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 + K+FL+G +K+ + + M QA+ + ++E A RD+L + I N + Sbjct: 175 KIKRFLNGDIGAVKQDLTQKMEQASEQLEFERAAEIRDQLKYIEETVEKQKIISNDNTQR 234 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP--CP 300 D F+ Y +K+ IQ F + T + + F+ QFY K P Sbjct: 235 DIFNYYVDKSWISIQIFFLRQAKLLRRETRMFPLTDTTDPEDAFTSFIVQFYGQKNRVLP 294 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS--- 357 + +L+ + +L E+ V + P++G+K+ +++ A NA K Sbjct: 295 KEVLIPAGFDNDTLAEVL-------TVPVRTPQRGQKKSLLDMAKDNAKLKLDDKFRLLE 347 Query: 358 -TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 K+ LP+ IE +D+SHI G V +VV + K YRK+ Sbjct: 348 LGNRKTMGAQKEIFDALGLPYG-HIIESFDHSHIQGADPVSALVVFKDGEPDKTAYRKYK 406 Query: 417 LHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 L D+ R V+ RR+ +L++ + + PD++++DGG+ Sbjct: 407 LKGEVEHQNGGDEVRNTREVVRRRYGRLLREHKKM--------------PDLILMDGGQI 452 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEA---LVLNMRDPILYFI 530 Q+ A + VL+ + I + + K K F G + LN + Y + Sbjct: 453 QVDACEDVLRN-ELNLNIPVAGMVKDDKHRTNHLLFGDPINGVPLKLIPLNPKSEGFYLM 511 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 R++DE HRFAIT HR+R K A S LD I GIGP + LL+ FG++K I +S + L Sbjct: 512 TRIQDEVHRFAITFHRRRHAKNALSSRLDSIKGIGPKSRNKLLRKFGSLKKIKEASVDDL 571 Query: 590 ASIEGISKKIACKIY 604 ++ G++ A + Sbjct: 572 RAV-GLTLPQAQTVK 585 >gi|227509456|ref|ZP_03939505.1| excinuclease ABC subunit C [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191168|gb|EEI71235.1| excinuclease ABC subunit C [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 589 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 175/609 (28%), Positives = 280/609 (45%), Gaps = 43/609 (7%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M DI G+++YVGKA NL+ R++SY ++H + ++S+I + +T T+ EA LLE Sbjct: 1 MKDINGKIIYVGKAKNLKNRVRSYF-KSSHEGKTARLVSEIADFETIITSTDKEAFLLEI 59 Query: 75 NMIKRLKPRFNILLRDDKS-FPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEK 133 +I++ +P FNI L+ S +PYI IT+ + P + YFGP+ +V A E+ Sbjct: 60 TLIQKHRPYFNIKLKQGHSGYPYIKITN-ERDPQIKIVNTLLKDGAYYFGPYPNVYAAEE 118 Query: 134 TINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSG 193 T+N LQ+ + LR C RPCL + + +C G C + E Y + K FL+G Sbjct: 119 TVNFLQKVYPLRRCNGFQ----NRPCLYYHMGQCLGACFKVVPEEVYDRQIKRIKSFLNG 174 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHN 250 + K+ +A+ M A+ YE A RD + + I + D F+ Y N Sbjct: 175 NVGHAKQMLAKRMEDASANMAYERAAEIRDLIKYIEITVEKQKIISHDNTPRDIFNYYMN 234 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAE 310 K IQ F + ++ + ++ P+ IL+ Sbjct: 235 KGWLSIQVFFIRQSRLMKREKRLFPIITDPEEEMVSFISQFYKQKNQILPKEILVPSS-- 292 Query: 311 ETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLSTEISHQMIL 366 L V + PK+G+KR ++E A NA E + Sbjct: 293 ----LPSDVVSSVVDDVPVRTPKRGQKRDLLEMAGKNAQLVLEEKFRLLELDESKTTGAM 348 Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426 K+ T +P ++E +D+SHI G V MVV + KN YRK+ L V D Sbjct: 349 KELTDAMGIP-EGHKVEAFDHSHIQGADLVSAMVVFVDGQPNKNLYRKYKLKT--VDHAD 405 Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV-LKK 485 + A R V+ RR+++L+K PD++++DGG Q++A + V + + Sbjct: 406 EAASTREVIRRRYTRLLKEH--------------AQMPDLILMDGGTIQMNAVKDVLVNE 451 Query: 486 LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545 L ++ I + + K + F L L+ + Y +QR++DE HRFAIT H Sbjct: 452 LGLD--IPVGGMVKNEHHQTA-DLLFGDSDTPLHLDPKSQGFYLLQRIQDEVHRFAITYH 508 Query: 546 RKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 RK K + S LD I G+GP + LL+ FG++K IS + + L ++ GIS+ +A I Sbjct: 509 RKVHAKNSLGSRLDSIAGVGPKTRNKLLRKFGSLKKISEAPVDDLKAL-GISETVAQTIK 567 Query: 605 NHFHKNTSH 613 K + Sbjct: 568 FSLSKIDAE 576 >gi|161507438|ref|YP_001577392.1| excinuclease ABC subunit C [Lactobacillus helveticus DPC 4571] gi|189038061|sp|A8YV13|UVRC_LACH4 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|160348427|gb|ABX27101.1| Excinuclease ABC subunit C [Lactobacillus helveticus DPC 4571] Length = 600 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 175/619 (28%), Positives = 287/619 (46%), Gaps = 46/619 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +PE PG Y M DI G V+YVGK+ NL+ R++SY S R ++ +I + Sbjct: 9 KLKLLPEKPGCYLMKDINGTVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVREIRDYDII 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T+ EA LLE +IK+ +P +N+ L+ +PYI IT +H P G Y Sbjct: 68 TVSTDKEAFLLEITLIKKYQPYYNVQLKQGTGYPYIEITREHD-PQTRLTSIVCKDGGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A + T+ +Q+ F LR C RPCL + + +C G C ++ ++Y Sbjct: 127 FGPYPNVYAAQATLKFIQKVFPLRRCHGYQ----GRPCLYYHMGQCLGACFKKVPQKEYD 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 E + + K+FL+G +K+ + + M QA+ + ++E A RD+L + I N Sbjct: 183 EQIKKIKRFLNGDIGAVKQDLTQKMEQASEQLEFERAAEIRDQLKYIEETVEKQKIISND 242 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 + D F+ Y +K+ IQ F + T + + F+ QFY K Sbjct: 243 NTQRDIFNYYVDKSWISIQIFFLRQAKLLRRETRMFPLTDITDPEDAFTSFIVQFYGQKN 302 Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P+ +L+ + +L E+ V + P++G+K+ +++ A NA K Sbjct: 303 RVLPKEVLIPAGFDNDTLAEVL-------TVPVRTPQRGQKKSLLDMAKDNAKLKLDDKF 355 Query: 357 S----TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + K+ LP+ IE +D+SHI G V +VV + K Y Sbjct: 356 RLLELGNRKTKGAQKEIFDALGLPYG-HIIESFDHSHIQGADPVSALVVFKDGEPDKTAY 414 Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 RK+ L D+ R V+ RR+ +L++ + + PD++++D Sbjct: 415 RKYKLKGEVEHQNGGDEVRNTREVVRRRYGRLLREHKKM--------------PDLILMD 460 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEA---LVLNMRDPI 526 GG+ Q+ A + VL+ + I + + K K F G + LN + Sbjct: 461 GGQIQVDACEDVLRN-ELNLNIPVAGMVKDDKHRTNHLLFGDPINGVPLKLIPLNPKSEG 519 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 Y + R++DE HRFAIT HR+R K A S LD I GIGP + LL+ FG++K I +S Sbjct: 520 FYLMTRIQDEVHRFAITFHRRRHAKNALSSRLDSIKGIGPKSRNKLLRKFGSLKKIKEAS 579 Query: 586 PETLASIEGISKKIACKIY 604 + L + G++ A + Sbjct: 580 VDDLRAA-GLTLPQAQTVK 597 >gi|313848323|emb|CBY17326.1| putative nuclease [Chlamydophila psittaci RD1] gi|328915007|gb|AEB55840.1| excinuclease ABC, C subunit [Chlamydophila psittaci 6BC] Length = 648 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 176/607 (28%), Positives = 293/607 (48%), Gaps = 38/607 (6%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFT 61 + +P PGVY M D +G VLY+GKA NL+ RI +Y + RI ++ + +I Sbjct: 8 PKLIPTSPGVYLMKDSSGEVLYIGKAKNLRNRISTYFRKQGDSRERIPFLMKKTTDIETI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS---STIQ 118 + E EA LLE N+IK+ P++N+LL+DDK+F + I+ H P + R S+ + Sbjct: 68 LVSNETEAFLLENNLIKKYHPKYNVLLKDDKTFFCLAISLTHLWPKIDVIRTKAVTSSKK 127 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 FGP+ S +A + + + F LR+C++ F R RPC+L+++KRC PC S E Sbjct: 128 QIIFGPYVSAEACRTLLEVISQWFPLRTCSNREFASRKRPCILYEMKRCLAPCVNLCSHE 187 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 +Y + + +A FL G + + + +++ +A+ ++ +E A ++ L + Sbjct: 188 EYEQTLEKAILFLKGQVSEVVQDLEKSIEKASKEQKFEQAGMYYRTLQLIQQAMVKQHVE 247 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + +D LY I G+ G F +++ + S+ L+ + + Sbjct: 248 KFHFQNIDAIGLYRKYQKTVITILTIRSGKLLGARHFPFSENAQEDADLLASFILQYYTS 307 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P+ IL L ++ PK G R+++ A NA Sbjct: 308 QPQTPKEILTPIPLNIPDLP---CLLNKDTPPQLRSPKTGYGRELLNLAKNNAQVHAETT 364 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 + S + ++ K P RIE YDN+H+ G AVG +V + YR F Sbjct: 365 I---QSSALPYEELKKILKSSDYPYRIECYDNAHLQGSHAVGVYIVYENDALSPKDYRTF 421 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 ++ + +D A R VL RRF+ L S PD++++DGG+ Q Sbjct: 422 SISSS---AYNDLAAFREVLSRRFTSLT-----------------SSIPDMILIDGGRTQ 461 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSA---GMEKFFVKK-GEALVLNMRDPILYFIQ 531 + A+ LK+LN+ I ++SIAK + EK F + ++L +L F Q Sbjct: 462 YAQAKKTLKELNLTG-IQVVSIAKEAGSHSSSLKKEKLFCDTFPQGVLLPPTSKLLQFFQ 520 Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +LRDEAHRFAI+ HRK+R K P ++I GIG ++++ LLQ F + + + ++S L + Sbjct: 521 KLRDEAHRFAISRHRKKRHKDFLLPKEKIPGIGEIKRKRLLQKFKSWEQVMKASQGELEA 580 Query: 592 IEGISKK 598 I G++KK Sbjct: 581 IPGLTKK 587 >gi|123966197|ref|YP_001011278.1| excinuclease ABC subunit C [Prochlorococcus marinus str. MIT 9515] gi|123200563|gb|ABM72171.1| Excinuclease ABC subunit C (UvrC) [Prochlorococcus marinus str. MIT 9515] Length = 644 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 183/625 (29%), Positives = 302/625 (48%), Gaps = 37/625 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 ++P+ G Y D+ +LY+GK+ L+ R+ SY ++ + + R+ M+ QI I VT Sbjct: 34 EIPKSSGCYLFKDLDNNLLYIGKSKTLRNRVSSYFNNYADLSPRLCLMVRQITEIDIIVT 93 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG--SY 121 +E EAL LE+N+IK KP FNILL+DDK +PY+ IT K P ++ R Y Sbjct: 94 DSEYEALNLESNLIKTNKPYFNILLKDDKKYPYLCITWSEKYPKIFITRKRRNRNNLDRY 153 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GP+ V + T+ +++ F LR S + +G +ISSE+Y Sbjct: 154 YGPYVDVGLLRNTLFLIKKIFPLRHSKLSK----------SFYREITGVDLEKISSEEYK 203 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + + +A G N +L + + + M+ + + YE A RD++ L + Sbjct: 204 KIMKQASMVFQGRNDDLIKILEKKMSFYSTELQYEKAAKIRDQINGLRLLTESQKISIPD 263 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D F + KN+A IQ G+ G + K + ++IL L + Y + Sbjct: 264 SSINRDIFGIVSEKNIASIQIFQMRSGKLIGRIGYSQKLNGLQ-ESEILQRILEEHYINV 322 Query: 298 ---PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P IL+ ++ ++E + KVKI PK+ K K IE NA + Sbjct: 323 EGIEIPSEILVQYNFQKIKIIEEWLSEIKQKKVKIINPKRSNKLKTIEMVQKNARLELNR 382 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 L+ ++ ++D ++ L P+R+E YD SHI G V VV + K YRK Sbjct: 383 ILNGIQDNESAIEDLSQILDLSIHPRRLEGYDISHIQGTDPVASQVVFIDGLPSKQNYRK 442 Query: 415 FNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENL--------NFHPKKQEYSFPSWP 464 + + ++V DD A + V+ RRF + + ++N F WP Sbjct: 443 YKIKDSNVYIGHSDDYASIYEVIHRRFRKWSRYKQNGGNLSTINNTKQSSLDNELFSDWP 502 Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524 D+V++DGGKGQL++A L++L++E + + S+AK + E + + L +M Sbjct: 503 DLVMIDGGKGQLNSAYKALEELDLEKDVILCSLAKKNE-----EIYVPGLTKPLNTDMNQ 557 Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISR 583 + ++RLRDEAHRFA++ HR +R + S L +I G+G R + LL+ F +V I Sbjct: 558 KGVMLLRRLRDEAHRFALSFHRNKRSRRMNRSQLTQIPGLGSSRIKDLLEHFNSVDAIRI 617 Query: 584 SSPETLASIEGISKKIACKIYNHFH 608 +S E L ++G+ A IY++F+ Sbjct: 618 ASKEELMKVKGLGSNTAKDIYDYFN 642 >gi|257125389|ref|YP_003163503.1| excinuclease ABC, C subunit [Leptotrichia buccalis C-1013-b] gi|257049328|gb|ACV38512.1| excinuclease ABC, C subunit [Leptotrichia buccalis C-1013-b] Length = 594 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 181/616 (29%), Positives = 284/616 (46%), Gaps = 39/616 (6%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIR 59 + + +P PGVY M + G+++YVGKA NLQ R+KSY + N+H + ++ I +I Sbjct: 9 IKYKDIPTHPGVYLMKNERGKIIYVGKAKNLQNRVKSYFMNINSHNQKTMELVKNIKDIE 68 Query: 60 FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST--I 117 F + +EVEAL+LE N+IK+ KP++NILL+D+K++PYI T K K P + R + Sbjct: 69 FFICKSEVEALILENNLIKKNKPKYNILLKDEKTYPYIKFT-KEKFPKVEIVRSTKKLNE 127 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 YFGP+ F + T+PCL + +K C PC + Sbjct: 128 NAEYFGPYP---MGIFFAMKTLLKIFPMRDCNRSMDKITKPCLKYYMKTCPAPCKYKDIE 184 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 ++Y V K FL G + + E + M + + + ++E AI R++LA L + Sbjct: 185 DEYSTNVKNFKNFLKGHSDKVIEMLESRMKKFSDEMEFERAINEREKLAVLKRMLETQII 244 Query: 238 IYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 Y+ D F + + G+ + + + + +Y Sbjct: 245 EYSKEIDEDVFVFEEKRENVFLCVLNIREGKVINKNDIIISLERSQEEN-LFERLITSYY 303 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII--EQALINAHRSH 352 + P++I+ E + LL + K +K + R++ E +N Sbjct: 304 EKRNIPKHIICDERFMSSELLIKEWAKIEKHKEIKLHFPKINSRRLQLLEMGYLNLREEV 363 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + Q L++ K+ L +P RIE +D S+I G AV M V + +Y Sbjct: 364 DKYYRKRRMVQEGLRNLKKELRLKSLPYRIECFDISNIQGKDAVAAMTVALDGETTPKEY 423 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472 R F + D DD MMR L RR+S++ ++ P+++++DGG Sbjct: 424 RHFKITVKDTP--DDFLMMREALTRRYSKIENDK----------------MPNLILIDGG 465 Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532 KGQL A VL+KL +I IAK + E F + E + D L +QR Sbjct: 466 KGQLGVAVDVLEKLGKIEHTDVIGIAKREE-----EIFKSYESEPYLFEKTDETLKILQR 520 Query: 533 LRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 LRDEAHRF IT HRK R K S LD+I GIGP RK+ L++ FG +K I ++ E L Sbjct: 521 LRDEAHRFGITHHRKLRSKRNVKSALDDITGIGPKRKKELIKKFGLIKNIRNATLEELME 580 Query: 592 IEGISKKIACKIYNHF 607 + + + IA I + Sbjct: 581 V--VPENIAISIKENL 594 >gi|297170619|gb|ADI21645.1| nuclease subunit of the excinuclease complex [uncultured myxobacterium HF0130_06F04] Length = 595 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 184/611 (30%), Positives = 291/611 (47%), Gaps = 36/611 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M + G+V Y+GKA NL+ R+KSY ++ + + + +I +T TE EAL++E Sbjct: 1 MKNAKGKVFYIGKAKNLRNRLKSYFSGSDTRAFVLLLDRLLADIEVILTPTEQEALIVEN 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 ++IK +P+ NI L DDK + + + + P + R YFGP++S ++ +T Sbjct: 61 DLIKEHRPKHNIKLVDDKRYLCLRLDTRKDYPRMEIRRSFKRDGARYFGPYSSATSIRQT 120 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194 +N L R F LR+C D V +R+RPCL +QIKRC PC ++S Y + V FL G Sbjct: 121 LNILNRYFQLRTCTDHVLNNRSRPCLQYQIKRCPAPCVYDLSDGSYSKNVEATIAFLDGR 180 Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND---SIYNRMDCFSLYHNK 251 + L EK+ + M + +YE A RD+L A+ D + D +Y Sbjct: 181 HETLIEKLEQEMKEKAAALEYEDAARIRDQLKAIRRTLEKQDLINPDFMDRDIIGIYREG 240 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEE 311 I G+ G L T + + R + T P +L+ E+ + Sbjct: 241 PAIEIHVLMSRGGRVFGAQRCSLDDSELPTQEVLTDFLSRYYQTTHNFPTEVLIPEDVDW 300 Query: 312 TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTK 371 + ++ G +V + PK+G KR++I+ A NA ++ K+ + + Q + + Sbjct: 301 AEEVGQLITQRAGRRVVLMHPKRGRKRRLIDMAHQNARQAFQDKVREQGAAQTAVDKLQR 360 Query: 372 KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMM 431 L P R+E +D SH G V V K YR++ + QDD M Sbjct: 361 ALHLRLPPIRMECFDISHFQGSEIVASCVSFQAGVPHKGGYRRYKIRSTTT--QDDFQSM 418 Query: 432 RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENR 491 V+ RR + ++ ++ PD++++DGG+GQL AA+ L + N Sbjct: 419 YEVISRRARRGLEKDD---------------LPDLMVIDGGRGQLGAARAALDDHGI-NH 462 Query: 492 ITIISIAKG------------PKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 + +I++AK PK A F + +VL L+ + R RDEAHR Sbjct: 463 LDLIALAKARQASSEVDKSSSPKIRAFERVFLEGRKNPVVLRPNSSELFMLTRARDEAHR 522 Query: 540 FAITTHR-KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FA+ +R RRKKA S LDEI GIGP RKR LL+SFG+++ + ++S + +A G K Sbjct: 523 FAVEYNRSARRKKAHSSILDEIPGIGPARKRKLLKSFGSIQRLEKASEKEIAKTVG--PK 580 Query: 599 IACKIYNHFHK 609 IA I+ H Sbjct: 581 IARLIHAKLHP 591 >gi|104773886|ref|YP_618866.1| excinuclease ABC subunit C [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116513892|ref|YP_812798.1| excinuclease ABC subunit C [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|119367661|sp|Q1GAM4|UVRC_LACDA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|122275338|sp|Q04B12|UVRC_LACDB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|103422967|emb|CAI97638.1| Excinuclease ABC, subunit C [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093207|gb|ABJ58360.1| Excinuclease ABC subunit C [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 600 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 175/620 (28%), Positives = 284/620 (45%), Gaps = 48/620 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +PE G Y M D+ G+V+YVGK+ NL+ R++SY S+ R ++ I + Sbjct: 9 KLKLLPEKAGCYLMKDVNGKVIYVGKSKNLKNRVRSYFKSSQEGRR-AELVKNIADYDII 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V ++ EA LLE +IK+ +P +N+ L+ +PYI IT+ K P +G Y Sbjct: 68 VVDSDKEAFLLEVTLIKKYQPYYNVALKSGTGYPYIEITN-EKNPQTRLTSIVYKDKGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A T+ +Q+ F LR C+ RPCL + + +C G C E+ +Y Sbjct: 127 FGPYPNVYAASATLKFIQKVFPLRRCSGYT----GRPCLYYHMGQCLGSCFKEVPQSEYD 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 E + + K+FL+G +K+ + M QA+ ++E A RD+L + I N Sbjct: 183 EQIKKIKRFLNGDIQEVKKDLTNKMLQASADLEFERAGELRDQLKYIEETVEKQKIISND 242 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F+ Y +++ IQ F + + E+ F+ QFY K Sbjct: 243 HTQRDIFNYYVDRSWISIQVFFLRQAKLLRRESHMFPLTDETDPEDEFMSFIAQFYAQKN 302 Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P +L+ + ++ L K P++G+K ++E A NA K Sbjct: 303 RVNPREVLVPKGIDQDELAAAIGIKVRT-------PQRGQKASLMEMARENAQLKLDDKF 355 Query: 357 S----TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + ++ K LP+ IE +D+SHI G V +VV + K Y Sbjct: 356 RLLELGQRKTKGAQEEIFKALGLPYGSY-IESFDHSHIQGADPVSALVVFKDGEPFKTGY 414 Query: 413 RKFNLHPNDVKTQ--DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 RKF L D+ R V+ RR+S+L+K E PD++++D Sbjct: 415 RKFKLKGEVEHQNSADEVGNTREVVRRRYSRLLKEHE--------------RMPDLILMD 460 Query: 471 GGKGQLSAAQGV-LKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEALVL---NMRDP 525 GG+ Q+ A + V +LN++ I + + K K + KG+ L + + Sbjct: 461 GGQIQVEACEDVLRNELNLD--IPVAGMVKDDKHRTNHLLYGDPFKGQPFKLIPMDPKSE 518 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 Y + R++DE HRFAIT HR+ K + S LD I GIGP + LL+ FG++K I + Sbjct: 519 GFYLMTRIQDEVHRFAITFHRQTHAKNSLVSRLDSIKGIGPKSRTKLLREFGSLKKIKEA 578 Query: 585 SPETLASIEGISKKIACKIY 604 S + L G++ A + Sbjct: 579 SIDDLRKA-GLTLTQAQAVK 597 >gi|295692858|ref|YP_003601468.1| uvrABC system protein c [Lactobacillus crispatus ST1] gi|295030964|emb|CBL50443.1| UvrABC system protein C [Lactobacillus crispatus ST1] Length = 600 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 177/622 (28%), Positives = 283/622 (45%), Gaps = 46/622 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +PE PG Y M DI G V+YVGK+ NL+ R++SY S R ++ +I + Sbjct: 9 KLKLLPEKPGCYLMKDINGTVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVREIRDYDII 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T+ EA LLE +IK+ +P +N+ L+ +PYI IT +H P G Y Sbjct: 68 TVSTDKEAFLLEITLIKKYQPYYNVQLKQGTGYPYIEITREHD-PQTRLTSIVHKDGGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A + T+ +Q+ F LR C RPCL + + +C G C ++ ++Y Sbjct: 127 FGPYPNVYAAQATLKFIQKVFPLRRCHGYQ----GRPCLYYHMGQCLGACFKKVPQKEYE 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 E + + K FL+G ++K+ + M QA ++E A RD+L + I N Sbjct: 183 EQIKKIKSFLNGDIASVKQSLTEKMAQAASNLEFERAAEIRDQLKYIEETVEKQKIISND 242 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 + D F+ Y +K+ +Q F + T + + F+ QFY + Sbjct: 243 NTQRDIFNYYVDKSWISVQIFFLRQAKLLRRETRMFPLTDATDPEDAFTSFIVQFYEQRN 302 Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P+ IL+ E + +L E+ KV + P++G+K+ +++ A NA K Sbjct: 303 RVLPKEILIPEGFDNATLAEVL-------KVPVRTPQRGQKKSLLDMAKDNAKLKLDDKF 355 Query: 357 S----TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + K+ LP+ IE +D+SHI G V +VV + K Y Sbjct: 356 RLLELGNRKTKGAQKEIFDALDLPYG-HFIESFDHSHIQGADPVSALVVFKDGEPEKTAY 414 Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 RK+ L D+ R V+ RR+ +L++ + PD++++D Sbjct: 415 RKYKLKGEVEHQNGGDEVRNTREVVRRRYGRLLREHK--------------RMPDLILMD 460 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEAL---VLNMRDPI 526 GG+ Q+ A VL+ + I + + K K F G L LN + Sbjct: 461 GGQIQVDACLDVLRN-ELNLNIPVAGMVKDDKHRTNHLLFGDPINGIPLKLTPLNPKSEG 519 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 Y + R++DE HRFAIT HR+R K A S LD I GIGP + LL+ FG++K I +S Sbjct: 520 FYLMTRIQDEVHRFAITFHRRRHAKNALSSRLDSIKGIGPKSRNKLLREFGSLKKIKEAS 579 Query: 586 PETLASIEGISKKIACKIYNHF 607 + L G++ A + Sbjct: 580 IDDLRRA-GLTLTQAQTVKLTL 600 >gi|157825946|ref|YP_001493666.1| excinuclease ABC subunit C [Rickettsia akari str. Hartford] gi|189038079|sp|A8GP33|UVRC_RICAH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|157799904|gb|ABV75158.1| excinuclease ABC subunit C [Rickettsia akari str. Hartford] Length = 651 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 221/643 (34%), Positives = 334/643 (51%), Gaps = 37/643 (5%) Query: 1 MSSEQM--PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNI 58 + S+ + PE GVY+M D+ +V+YVGKA NL+KR+ Y ++ ++ MI+ + Sbjct: 11 IKSKLIDAPERCGVYRMFDVNKQVIYVGKAKNLKKRLTHY-IKSDLDNKTLRMIANTCFL 69 Query: 59 RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118 +++T +EVEALLLEA +IK+ +P+FNILL+DDKSFP+I + H P L K+R + Sbjct: 70 EYSITNSEVEALLLEAQLIKKFQPKFNILLKDDKSFPFIKLRLDHDFPQLLKYRGKTLND 129 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 G FGPFAS V T+ LQ+ F LRSC D+ F RTRPC+ ++IKRC PC G+I+ E Sbjct: 130 GKCFGPFASATEVNTTLTELQKIFKLRSCTDNYFNSRTRPCMQYEIKRCYAPCVGKINKE 189 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y + V + K FL G L+E +++ M + + + +E A RDR+ ALS++Q + Sbjct: 190 DYRDLVAQVKDFLQGRTKALQENLSKKMEELSSQMRFEEAAEIRDRIKALSYVQLKSCVS 249 Query: 239 --YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 D + C++ + Q G +F + ST ++L YFL QFY Sbjct: 250 DIVKDADIIVVVEKNGHYCVEVFLYRAWQACGNIPYFPTSTENSTKEEVLEYFLLQFYQK 309 Query: 297 KPCPENILLSEEAEETSLLEISFFK-QYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P I+++ E + + + K K+ I +P G K K+++ A I A S Q Sbjct: 310 QQVPAEIIINHEINDKENMIEAIKKINNITKLNIIIPISGGKAKLVQNAAIKALFSLEQY 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L + +Q I+ + F L IP+RIEIYDNSHI G AVG +VVVG+ GF K +YR F Sbjct: 370 LKKFVKNQEIMLEIKALFGLHEIPERIEIYDNSHIQGKFAVGVVVVVGKAGFDKKEYRVF 429 Query: 416 NLHP----------------------------NDVKTQDDCAMMRMVLERRFSQLIKNEE 447 +L + V + + Sbjct: 430 SLSSCDASLSSHAYPFSPRNLIAGSSTLTNPMDPVVRSREDDTSSTHNYAVGDDYEMLRQ 489 Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507 L + + P ++I+DGGKG L + V+ K + I + ++KG R+AG+ Sbjct: 490 VLIRRLTRLKNEPHKLPSLMIIDGGKGHLGIVKEVMDKFAMH--IPFVCMSKGVDRNAGI 547 Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPL 566 E+F + E L+ PI+ ++Q LRDEAH FAI HR R +A S LD I G+G Sbjct: 548 EQFHMTGKEVFTLDTNLPIMKYLQILRDEAHNFAIKNHRLGRSRAIKISSLDNIEGVGET 607 Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 RK+ LL FG+ K + ++ + L + GI+K +A I+ HK Sbjct: 608 RKKALLHYFGSYKAVCDATIDELTKVNGINKSLAAMIFRTLHK 650 >gi|300812696|ref|ZP_07093105.1| excinuclease ABC, C subunit [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496323|gb|EFK31436.1| excinuclease ABC, C subunit [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 600 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 175/620 (28%), Positives = 284/620 (45%), Gaps = 48/620 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +PE G Y M D+ G+V+YVGK+ NL+ R++SY S+ R ++ I + Sbjct: 9 KLKLLPEKAGCYLMKDVNGKVIYVGKSKNLKNRVRSYFKSSQEGRR-AELVKNIADYDII 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V ++ EA LLE +IK+ +P +N+ L+ +PYI IT+ K P +G Y Sbjct: 68 VVDSDKEAFLLEVTLIKKYQPYYNVALKSGTGYPYIEITN-EKNPQTRLTSIVYKDKGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A T+ +Q+ F LR C+ RPCL + + +C G C E+ +Y Sbjct: 127 FGPYPNVYAASATLKFIQKVFPLRRCSGYT----GRPCLYYHMGQCLGSCFKEVPQSEYD 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 E + + K+FL+G +K+ + M QA+ ++E A RD+L + I N Sbjct: 183 EQIKKIKRFLNGDIQEVKKDLTNKMLQASADLEFERAGELRDQLKYIEETVEKQKIISND 242 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F+ Y +++ IQ F + + E+ F+ QFY K Sbjct: 243 HTQRDIFNYYVDRSWISIQVFFLRQAKLLRRESHMFPLTDETDPEDEFMSFIAQFYAQKN 302 Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P +L+ + ++ L K P++G+K ++E A NA K Sbjct: 303 RVKPREVLVPKGIDQDELAAAIGIKVRT-------PQRGQKASLMEMARENAQLKLDDKF 355 Query: 357 S----TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + ++ K LP+ IE +D+SHI G V +VV + K Y Sbjct: 356 RLLELGQRKTKGAQEEIFKALGLPYGSY-IESFDHSHIQGADPVSALVVFKDGEPFKTGY 414 Query: 413 RKFNLHPNDVKTQ--DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 RKF L D+ R V+ RR+S+L+K E PD++++D Sbjct: 415 RKFKLKGEVEHQNSADEVGNTREVVRRRYSRLLKEHE--------------RMPDLILMD 460 Query: 471 GGKGQLSAAQGV-LKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEALVL---NMRDP 525 GG+ Q+ A + V +LN++ I + + K K + KG+ L + + Sbjct: 461 GGQIQVEACEDVLRNELNLD--IPVAGMVKDDKHRTNHLLYGDPFKGQPFKLIPMDPKSE 518 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 Y + R++DE HRFAIT HR+ K + S LD I GIGP + LL+ FG++K I + Sbjct: 519 GFYLMTRIQDEVHRFAITFHRQTHAKNSLVSRLDSIKGIGPKSRTKLLREFGSLKKIKEA 578 Query: 585 SPETLASIEGISKKIACKIY 604 S + L G++ A + Sbjct: 579 SIDDLRKA-GLTLTQAQAVK 597 >gi|328958170|ref|YP_004375556.1| UvrABC system protein C [Carnobacterium sp. 17-4] gi|328674494|gb|AEB30540.1| UvrABC system protein C [Carnobacterium sp. 17-4] Length = 569 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 164/604 (27%), Positives = 284/604 (47%), Gaps = 47/604 (7%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M + ++Y+GKA +L+KR++SY H + ++ +I + +T T+ E LLLE Sbjct: 1 MKNKENEIIYIGKAKSLKKRVRSYFRGT-HEGKTQLLVEEIVDFETIITSTDKECLLLEI 59 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 +IK+ P++NI L+ S+PY+ IT+ K P L + G YFGP+ +V A +T Sbjct: 60 TLIKKHLPKYNIKLKQGTSYPYLKITN-EKDPQLIITSEVKRDGGHYFGPYPNVYAASET 118 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194 +Q+ + LR C R CL + + +C GPC EI E+Y + + ++FL+G Sbjct: 119 QQFIQKVYPLRKCNGYQ----KRACLYYHLGQCIGPCDHEIPKEEYDAQIDKIRRFLNGD 174 Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM---DCFSLYHNK 251 +K+ + M +A + +E A +R+++ + + I N D FS Y NK Sbjct: 175 VKEIKKILKSKMMKAAEELAFERAAEYRNQIQYIETTVERQNIITNDFTTRDVFSYYMNK 234 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP--CPENILLSEEA 309 IQ F T + L+ ++ QFY + P +L+ Sbjct: 235 GWISIQVFFIRQATLIKREATIFPC--YDTPQEELASYIVQFYQEDNHLLPREVLVPNGV 292 Query: 310 EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLSTEISHQMI 365 + +L E+ ++ + VP QG K+ +++ A N+ + Sbjct: 293 DTKTLSEVL-------EIPVKVPIQGRKKDMLDLATKNSEISLNEKFQLIEMDDRKTIGA 345 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 +K+ ++ +LP + RIE +D+S+I G + V MV + K+ YRK+ + V Sbjct: 346 IKELSEALSLPLVS-RIEAFDHSNIQGTNPVSAMVSFLDGKPDKSNYRKYKIKS--VSGS 402 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS-AAQGVLK 484 ++ A V+ RR+++L+K L PD++++DGGK Q++ A + Sbjct: 403 NELATTEEVIRRRYTRLLKEGRPL--------------PDLILMDGGKIQVNGAINILEN 448 Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544 +L + I + + K K F + + + L Y +QR++DE HRFAIT Sbjct: 449 ELGLS--IPVAGMVKDDKHRTSS-LIFGEDLQKVTLKPTSQAFYLVQRIQDEVHRFAITF 505 Query: 545 HRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 HR+ R K + S LD I G+GP + +L+ F +VK + +S E + + GI K A +I Sbjct: 506 HRQLRGKNSLSSKLDRIEGVGPKTRTKILKHFKSVKNVKEASVEEINGL-GIPLKTAVRI 564 Query: 604 YNHF 607 Sbjct: 565 KEGL 568 >gi|227879074|ref|ZP_03996963.1| excision endonuclease subunit UvrC [Lactobacillus crispatus JV-V01] gi|256843063|ref|ZP_05548551.1| excinuclease ABC, C subunit [Lactobacillus crispatus 125-2-CHN] gi|256850285|ref|ZP_05555714.1| excinuclease ABC subunit C [Lactobacillus crispatus MV-1A-US] gi|293381296|ref|ZP_06627299.1| excinuclease ABC subunit C [Lactobacillus crispatus 214-1] gi|227861315|gb|EEJ68945.1| excision endonuclease subunit UvrC [Lactobacillus crispatus JV-V01] gi|256614483|gb|EEU19684.1| excinuclease ABC, C subunit [Lactobacillus crispatus 125-2-CHN] gi|256712922|gb|EEU27914.1| excinuclease ABC subunit C [Lactobacillus crispatus MV-1A-US] gi|290922112|gb|EFD99111.1| excinuclease ABC subunit C [Lactobacillus crispatus 214-1] Length = 600 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 176/622 (28%), Positives = 283/622 (45%), Gaps = 46/622 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +PE PG Y M DI G V+YVGK+ NL+ R++SY S R ++ +I + Sbjct: 9 KLKLLPEKPGCYLMKDINGTVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVREIRDYDII 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T+ EA LLE +IK+ +P +N+ L+ +PYI IT +H P G Y Sbjct: 68 TVSTDKEAFLLEITLIKKYQPYYNVQLKQGTGYPYIEITREHD-PQTRLTSIVHKDGGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A + T+ +Q+ F LR C RPCL + + +C G C ++ ++Y Sbjct: 127 FGPYPNVYAAQATLKFIQKVFPLRRCHGYQ----GRPCLYYHMGQCLGACFKKVPQKEYE 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 E + + K FL+G ++K+ + M QA ++E A RD+L + I N Sbjct: 183 EQIKKIKSFLNGDIASVKQSLTEKMAQAASNLEFERAAEIRDQLKYIEETVEKQKIISND 242 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 + D F+ Y +K+ +Q F + T + + F+ QFY + Sbjct: 243 NTQRDIFNYYVDKSWISVQIFFLRQAKLLRRETRMFPLTDATDPEDAFTSFIVQFYGQRN 302 Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P+ IL+ E + +L E+ KV + P++G+K+ +++ A NA K Sbjct: 303 RVLPKEILIPEGFDNATLAEVL-------KVPVRTPQRGQKKSLLDMAKDNAKLKLDDKF 355 Query: 357 S----TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + K+ LP+ IE +D+SHI G V +VV + K Y Sbjct: 356 RLLELGNRKTKGAQKEIFDALGLPYG-HFIESFDHSHIQGADPVSALVVFKDGEPEKTAY 414 Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 RK+ L D+ R V+ RR+ +L++ + PD++++D Sbjct: 415 RKYKLKGEVEHQNGGDEVRNTREVVRRRYGRLLREHK--------------RMPDLILMD 460 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEA---LVLNMRDPI 526 GG+ Q+ A VL+ + I + + K K F G + LN + Sbjct: 461 GGQIQVDACLDVLRN-ELNLNIPVAGMVKDDKHRTNHLLFGDPINGIPLKLIPLNPKSEG 519 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 Y + R++DE HRFAIT HR+R K A S LD I GIGP + LL+ FG++K I +S Sbjct: 520 FYLMTRVQDEVHRFAITFHRRRHAKNALSSRLDSIKGIGPKSRNKLLREFGSLKKIKEAS 579 Query: 586 PETLASIEGISKKIACKIYNHF 607 + L G++ A + Sbjct: 580 IDDLRRA-GLTLTQAQTVKLTL 600 >gi|58337244|ref|YP_193829.1| excinuclease ABC subunit C [Lactobacillus acidophilus NCFM] gi|227903828|ref|ZP_04021633.1| excinuclease ABC subunit C [Lactobacillus acidophilus ATCC 4796] gi|75357715|sp|Q5FKH6|UVRC_LACAC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|58254561|gb|AAV42798.1| excinuclease ABC subunit C [Lactobacillus acidophilus NCFM] gi|227868715|gb|EEJ76136.1| excinuclease ABC subunit C [Lactobacillus acidophilus ATCC 4796] Length = 600 Score = 428 bits (1101), Expect = e-117, Method: Composition-based stats. Identities = 173/619 (27%), Positives = 287/619 (46%), Gaps = 46/619 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +PE PG Y M DI G V+YVGK+ NL+ R++SY S R ++ +I + Sbjct: 9 KLKLLPEKPGCYLMKDINGTVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVREIRDYDII 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T+ EA LLE +IK+ +P +N+ L+ +PYI IT +H P G Y Sbjct: 68 TVSTDKEAFLLEITLIKKYQPYYNVQLKQGTGYPYIEITREHD-PQTRLTSVVHKDGGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A + T+ +++ + LR C RPCL + + +C G C ++ ++Y Sbjct: 127 FGPYPNVYAAQATLKFIRKVYPLRRCHGYQ----GRPCLYYHMGQCLGACFKKVPQKEYD 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 E + + K FL+G ++K+ + M +A+ ++E A RD+L + I N Sbjct: 183 EQIKKIKSFLNGDITSVKQDLTTKMEKASENLEFERAAEIRDQLKYIEETVEKQKIISND 242 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 + D F+ Y +K+ IQ F + T + + F+ QFY K Sbjct: 243 NTQRDIFNYYVDKSWISIQIFFLRQAKLLRRETRMFPLTDAADPEDAFTSFIVQFYGQKN 302 Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P+ IL+ ++ +L E+ V + P++G+K+ +++ A NA K Sbjct: 303 RILPKEILIPSGFDDDTLAEVL-------NVAVRTPQRGQKKSLLDMAKDNAKLKLDDKF 355 Query: 357 S----TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + K+ LP+ IE +D+SHI G V +VV + K Y Sbjct: 356 RLLELGNRKTKGAQKEIFDALGLPYG-HVIESFDHSHIQGADPVSALVVFKDGEPDKTSY 414 Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 RK+ L D+ R V+ RR+ +L++ + + PD++++D Sbjct: 415 RKYKLKGEVEHQNGGDEVRNTREVVRRRYGRLLREHKKM--------------PDLILMD 460 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEA---LVLNMRDPI 526 GG+ Q+ A + VL+ + I + + K K F G + L+ + Sbjct: 461 GGQIQVDACEDVLRN-ELNLNIPVAGMVKDDKHRTNHLLFGDPINGIPLKLIPLDPKSEG 519 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 Y + R++DE HRFAIT HR+R K A S LD I GIGP + LL++FG++K I +S Sbjct: 520 FYLMTRIQDEVHRFAITFHRRRHAKNALSSRLDSIKGIGPKSRNKLLRNFGSLKKIKEAS 579 Query: 586 PETLASIEGISKKIACKIY 604 E L + G++ A + Sbjct: 580 IEDLRAA-GLTLPQAQTVK 597 >gi|323343707|ref|ZP_08083934.1| excinuclease ABC subunit C [Prevotella oralis ATCC 33269] gi|323095526|gb|EFZ38100.1| excinuclease ABC subunit C [Prevotella oralis ATCC 33269] Length = 615 Score = 428 bits (1101), Expect = e-117, Method: Composition-based stats. Identities = 173/623 (27%), Positives = 299/623 (47%), Gaps = 48/623 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 MPE PG YQ D ++YVGKA L+ R+ SY H + ++S+I +I +TV Sbjct: 19 SMPEKPGSYQFYDENHHIIYVGKAKRLKTRVSSYFHKEVDRFKTKVLVSRIYDISYTVVN 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE ++IK+ PR+N+LL+D K++P I IT+ +P ++K R + G+Y+GP Sbjct: 79 TEEDALLLENSLIKKYNPRYNVLLKDGKTYPSICITN-EYLPRIFKTRTINKRFGTYYGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFR-----HRTRPCLLFQIKRCSGPCTGEISSEK 179 ++++ ++ +N + + + R+C + R H+ + CL + I C+ PC G+ S E+ Sbjct: 138 YSNLSSMNAVLNLINKLYKPRTCRFPITREGIENHKYKACLEYHIHNCNAPCIGKQSYEE 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y E + +A++ L G + I + M + + +E A + R + + ++ + Sbjct: 198 YQENIKQAREILKGNTREVSNYIFKLMQEKAAELKFEEAEALKQRYTLIENFVAKSEVVS 257 Query: 240 NRMDCFSLYHN-----KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 ++ ++ KN A I G + TF K + N ++L + + Sbjct: 258 YSINDVDVFTIVDDDLKNNAYINYIHVKNGTINQSFTFEYKRKLDENNKELLITAIPEIR 317 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 ++ E + VP++G+K+ ++E + +N + Sbjct: 318 ERFKSTAKEIIVPFEMEWKI----------KDATFFVPQRGDKKHLLELSEMNGKQYKFD 367 Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 +L E ++K+ +K LP +P +IE +DNS+I G AV +V Sbjct: 368 RLKQSEKLNPEQKQTRLMKELQEKLNLPKLPYQIECFDNSNISGTDAVAGCIVFKGMKPS 427 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 K YRK+N+ V DD A M+ V+ RR++++ + PD++I Sbjct: 428 KKDYRKYNIKT--VDGPDDYASMKEVVRRRYNRMKEEG--------------TPLPDLII 471 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 DGGKGQ+ + V++ + +I I +AK E F + + L + + Sbjct: 472 TDGGKGQMEVVREVVEDE-LGLQIPIAGLAKDDHHRT-NELLFGFPPQVIGLKTDSELFH 529 Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 + ++DE HRFAIT HR +R K A +S LD+I GIG K L+++F TVK + + + Sbjct: 530 SLTHIQDEVHRFAITFHRDKRSKHALHSELDDIKGIGTKTKETLIKAFKTVKKVKATDIQ 589 Query: 588 TLASIEGISKKIACKIYNHFHKN 610 L I A IYNHFH + Sbjct: 590 GLTK--EIGALKAKIIYNHFHPD 610 >gi|332704247|ref|ZP_08424335.1| UvrABC system protein C [Desulfovibrio africanus str. Walvis Bay] gi|332554396|gb|EGJ51440.1| UvrABC system protein C [Desulfovibrio africanus str. Walvis Bay] Length = 604 Score = 428 bits (1101), Expect = e-117, Method: Composition-based stats. Identities = 179/616 (29%), Positives = 286/616 (46%), Gaps = 33/616 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 S+ + PGVY M + GR+LYVGKA L+KR+ SY S+ T + ++++I I Sbjct: 5 ESKAFSQEPGVYLMKNAQGRILYVGKAKCLRKRLASYFRSSSGLTPKTQSLVARIERIDT 64 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T TE EALLLE ++IK+ +PR+N+LLRDDK + + P L R + Sbjct: 65 LITATEKEALLLEESLIKKHRPRYNVLLRDDKQYVLFRLDRHKDFPRLVMTRKVTRDGSI 124 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 Y+GPF S A +T + + F LR C D VF +R RPCL + I RC GPC E+ +Y Sbjct: 125 YYGPFTSSVAARETWKVINKVFPLRKCGDHVFANRVRPCLNYHIGRCLGPCVNEVDKGEY 184 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 V + + LSG + L + M A+ D+E A + RD+ AA+ + Sbjct: 185 RRLVMQIEMLLSGRSGELMANLEAEMRAASDNLDFERAAVLRDQAAAVRRTVERQTVVLP 244 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 MD +L + + F G+ G +FF ++++ FL Q+YT Sbjct: 245 EERDMDVMALAPTGSGLSLGLLFIRQGRLLGHKSFFFSGMELEDGPEVVASFLAQYYTPA 304 Query: 298 PCPENILLSEEAEETSLLEISFF--KQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + ++ + ++ G V + P+ ++++I+ A NA S Sbjct: 305 RFIPSRIVMPFPPSEEEDGVVQLLVERRGGLVILAEPRSLAEKELIDTAKRNALESIRSA 364 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 ++ + +K L P+RIE D SH+ G +V + +K+ YR + Sbjct: 365 ERQPMT-----ELLGRKLGLAIEPRRIECVDVSHLGGEGMRVGQIVYMDGEPLKDAYRTY 419 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 +L + D A L K++ S WPD+V++DGG+GQ Sbjct: 420 SLPELEGTADDYLA-------------------LASWAKRRVESGEPWPDLVLIDGGRGQ 460 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGME--KFFVKKGEALVLNMRDPILYFIQRL 533 L+A + L + N + SIAK +R+ +E F + L L P L F+QRL Sbjct: 461 LAAVERALGEAGQPNLFELASIAKAGRRAGELEDLIFRPGRKNPLPLKPGSPELLFLQRL 520 Query: 534 RDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RD AH + + R+ R++ S L + IGP RLL + F +V + ++P+ + SI Sbjct: 521 RDAAHNYVLGRQRQGRRRQVLQSELLSLPSIGPKTARLLWERFDSVDAMLAAAPDEIKSI 580 Query: 593 EGISKKIACKIYNHFH 608 G+ K A +I + Sbjct: 581 PGLGGKRAERILASLN 596 >gi|310778228|ref|YP_003966561.1| Excinuclease ABC subunit C [Ilyobacter polytropus DSM 2926] gi|309747551|gb|ADO82213.1| Excinuclease ABC subunit C [Ilyobacter polytropus DSM 2926] Length = 600 Score = 428 bits (1101), Expect = e-117, Method: Composition-based stats. Identities = 185/625 (29%), Positives = 302/625 (48%), Gaps = 39/625 (6%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + +PE PGVY M +V+YVGKA NL+KR+ SY + + + ++ I ++ F Sbjct: 3 IKKIDIPENPGVYLMK-KGDKVIYVGKAKNLKKRVSSYFNREHIDEKTRELVKNIESLDF 61 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST---I 117 + +E++AL+LE N+IKR P++NI L+D+K++PYI T K P + R + + Sbjct: 62 IICNSELDALVLENNLIKRYSPKYNISLKDEKTYPYIKFT-KEDYPKITIIRTTKSLDTE 120 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 G YFGP+ +L + F +R C + + RPCL + + C+GPC + Sbjct: 121 SGYYFGPYP--YGCRNLKKTLIKIFKIRDCKRDMSKKYDRPCLKYFMNLCTGPCVYKDVM 178 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 +Y E V AKK L G + M +A+ + +E AI++R++L L + + + Sbjct: 179 HEYRENVENAKKLLKGRGKEVIAHQKAKMEKASEELRFEEAILYRNQLKELENAEKSQVA 238 Query: 238 IYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 Y+ D F + G+ + + + + + +Y Sbjct: 239 EYDKAVDEDLFVFSIEGERLFLCVLNMRDGKILEKKSSGTDLKGKVFDN-LFQEVVTDYY 297 Query: 295 TDKPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRK-IIEQALINAHRSH 352 + P+NI+ +E E + ++ + G K+ + PK +R +++ AL+N +R Sbjct: 298 SKHSIPKNIVFQKENEENSEIVGKWLTLKSGKKIDLYFPKVKSRRMDLLDMALLNLNRDI 357 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + + L L IP+RIE +D S+I G AV M V E K +Y Sbjct: 358 ESYFTRKNVLEEGLMSLYSILELKKIPRRIECFDISNIQGKDAVASMSVAIEGKLSKKEY 417 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472 RKF + D DD MMR V ERR+S+L ++E PD++++DGG Sbjct: 418 RKFKIKSKDTP--DDFQMMREVAERRYSKLKEHE----------------LPDLILIDGG 459 Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532 GQL + +LKKL + IISIAK + E F + + + + L +QR Sbjct: 460 LGQLGSVGNILKKLKKSEFLDIISIAKREE-----EIFKLGETTPYIFPKSEESLKILQR 514 Query: 533 LRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 LRDEAHRF ++ HRK R K S LD I GIGP RK LL+ FG+V I ++ + L + Sbjct: 515 LRDEAHRFGVSYHRKLRSKRVLASELDSIEGIGPKRKEALLKKFGSVSGIKKAGEDELCT 574 Query: 592 IEGISKKIACKIYNHFHKNTSHTPT 616 + +S+ +A ++ + + T Sbjct: 575 V--LSEALAKRVIRGLNDDGKKKDT 597 >gi|325125554|gb|ADY84884.1| Excinuclease ABC subunit C [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 600 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 175/620 (28%), Positives = 284/620 (45%), Gaps = 48/620 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +PE G Y M D+ G+V+YVGK+ NL+ R++SY S+ R ++ I + Sbjct: 9 KLKLLPEKAGCYLMKDVNGKVIYVGKSKNLKNRVRSYFKSSQEGRR-AELVKNIADYDII 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V ++ EA LLE +IK+ +P +N+ L+ +PYI IT+ K P +G Y Sbjct: 68 VVDSDKEAFLLEVTLIKKYQPYYNVALKSGTGYPYIEITN-EKNPKTRLTSIVYKDKGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A T+ +Q+ F LR C+ RPCL + + +C G C E+ +Y Sbjct: 127 FGPYPNVYAASATLKFIQKVFPLRRCSGYT----GRPCLYYHMGQCLGSCFKEVPQSEYD 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 E + + K+FL+G +K+ + M QA+ ++E A RD+L + I N Sbjct: 183 EQIKKIKRFLNGDIQEVKKDLTNKMLQASADLEFERAGELRDQLKYIEETVEKQKIISND 242 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F+ Y +++ IQ F + + E+ F+ QFY K Sbjct: 243 HTQRDIFNYYVDRSWISIQVFFLRQAKLLRRESHMFPLTDETDPEDEFMSFIAQFYAQKN 302 Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P +L+ + ++ L K P++G+K ++E A NA K Sbjct: 303 RVNPREVLVPKGIDQDELAAAIGIKVRT-------PQRGQKASLMEMARENAQLKLDDKF 355 Query: 357 S----TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + ++ K LP+ IE +D+SHI G V +VV + K Y Sbjct: 356 RLLELGQRKTKGAQEEIFKALGLPYGSY-IESFDHSHIQGADPVSALVVFKDGEPFKTGY 414 Query: 413 RKFNLHPNDVKTQ--DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 RKF L D+ R V+ RR+S+L+K E PD++++D Sbjct: 415 RKFKLKGEVEHQNSADEVGNTREVVRRRYSRLLKEHE--------------RMPDLILMD 460 Query: 471 GGKGQLSAAQGV-LKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEALVL---NMRDP 525 GG+ Q+ A + V +LN++ I + + K K + KG+ L + + Sbjct: 461 GGQIQVEACEDVLRNELNLD--IPVAGMVKDDKHRTNHLLYGDPFKGQPFKLIPMDPKSE 518 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 Y + R++DE HRFAIT HR+ K + S LD I GIGP + LL+ FG++K I + Sbjct: 519 GFYLMTRIQDEVHRFAITFHRQTHAKNSLVSRLDSIKGIGPKSRTKLLREFGSLKKIKEA 578 Query: 585 SPETLASIEGISKKIACKIY 604 S + L G++ A + Sbjct: 579 SIDDLRKA-GLTLTQAQAVK 597 >gi|326803008|ref|YP_004320826.1| excinuclease ABC, C subunit [Aerococcus urinae ACS-120-V-Col10a] gi|326650857|gb|AEA01040.1| excinuclease ABC, C subunit [Aerococcus urinae ACS-120-V-Col10a] Length = 606 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 160/613 (26%), Positives = 294/613 (47%), Gaps = 42/613 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+ PG Y M D ++Y+GKA NL R+ SY + HT + ++++I + Sbjct: 9 KLKLVPKKPGCYIMKDRNQHIIYIGKAKNLFNRVHSYFR-SQHTGKTAQLVAEIADFEVI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 +T T E+LLLE N+IK+ KP +NI+L+ +PY+ IT++ P L D G Y Sbjct: 68 MTNTNKESLLLEINLIKKYKPHYNIMLKYGTMYPYLKITNEED-PQLIITSDVKKDGGKY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V+A T + LQ+T+ LR C ++ R C + + +C G C E+S+++Y Sbjct: 127 FGPYPNVNAATSTRDLLQKTYPLRKCG----KNEKRACFYYHLGQCIGCCDHEVSAQEYA 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 + + +FL+G +K + M A+ YE A +RD++ + + + Sbjct: 183 QQIKRITRFLNGDVQTIKNDLQNKMATASENMHYERAAEYRDQINYIEQTVEPQNVMSKQ 242 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 YN D F+ Y+N IQ + ++ + Sbjct: 243 YNNRDVFAYYYNHGWISIQVFLLRQFSIIKRDSALFACYNDPAEELTSYIVQFYQEQNHT 302 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL-- 356 P+ +L+ E + L + ++ + PK+G+KR +++ A NA +H QK Sbjct: 303 LPKEVLVPENIDTHLLSDAL-------EISVVNPKRGDKRHMLDLATENAQLAHEQKFRL 355 Query: 357 --STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 E + +++ + LP++ R+E +D S+I G V MVV + K YRK Sbjct: 356 LEMNEKKTRGAVEELSDALNLPYLR-RMESFDFSNISGVDNVCGMVVYEDGRPNKKAYRK 414 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + + ++ + V+ RR+S+L+K ++L PD+V++DGG Sbjct: 415 FKIKS--FQGANEYQATQEVIRRRYSRLLKEGKDL--------------PDIVLMDGGSI 458 Query: 475 QLSAAQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 +++AA+ V + +L +++ + + + K K + + L+ + + +QR+ Sbjct: 459 EVNAARDVLVNELGLDD-LPVAGMVKDDKHRTSH-LIYGDDHAIVPLDPKSQAFHLVQRI 516 Query: 534 RDEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 + E R+A T HR+ K + S LD + G+GP +R +L F T+K I ++ + + Sbjct: 517 QIEVDRYAKTFHRQVHHKNSFQSRLDSVKGVGPKTRRKVLSHFKTIKAIRQADLSEIQGL 576 Query: 593 EGISKKIACKIYN 605 GIS+++A I+ Sbjct: 577 -GISEQVAESIHR 588 >gi|313123507|ref|YP_004033766.1| excision endonuclease subunit uvrc [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280070|gb|ADQ60789.1| Excision endonuclease subunit UvrC [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 600 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 176/620 (28%), Positives = 284/620 (45%), Gaps = 48/620 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +PE G Y M D+ G+V+YVGK+ NL+ R++SY S+ R ++ I + Sbjct: 9 KLKLLPEKAGCYLMKDVKGKVIYVGKSKNLKNRVRSYFKSSQEGRR-AELVKNIADYDII 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V ++ EA LLE +IK+ +P +N+ L+ +PYI IT+ K P +G Y Sbjct: 68 VVDSDKEAFLLEVTLIKKYQPYYNVALKSGTGYPYIEITN-EKNPQTRLTSIVYKDKGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A T+ +Q+ F LR C+ RPCL + + +C G C E+ KY Sbjct: 127 FGPYPNVYAASATLKFIQKVFPLRRCSGYT----GRPCLYYHMGQCLGSCFKEVPQSKYD 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 E + + K+FL+G +K+ + M QA+ ++E A RD+L + I N Sbjct: 183 EQIKKIKRFLNGDIQEVKKDLTNKMLQASADLEFERAGELRDQLKYIEETVEKQKIISND 242 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F+ Y +++ IQ F + + E+ F+ QFY K Sbjct: 243 HTQRDIFNYYVDRSWISIQVFFLRQAKLLRRESHMFPLTDETDPEDEFMSFIAQFYAQKN 302 Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P +L+ + ++ L K P++G+K ++E A NA K Sbjct: 303 RVKPREVLVPKGIDQDELAAAIGIKVRT-------PQRGQKASLMEMARENAQLKLDDKF 355 Query: 357 S----TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + ++ K LP+ IE +D+SHI G V +VV + K Y Sbjct: 356 RLLELGQRKTKGAQEEIFKALGLPYGSY-IESFDHSHIQGADPVSALVVFKDGEPFKTGY 414 Query: 413 RKFNLHPNDVKTQ--DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 RKF L D+ R V+ RR+S+L+K E PD++++D Sbjct: 415 RKFKLKGEVEHQNSADEVGNTREVVRRRYSRLLKEHE--------------RMPDLILMD 460 Query: 471 GGKGQLSAAQGV-LKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEALVL---NMRDP 525 GG+ Q+ A + V +LN++ I + + K K + KG+ L + + Sbjct: 461 GGQIQVEACEDVLRNELNLD--IPVAGMVKDDKHRTNHLLYGDPFKGQPFKLIPMDPKSE 518 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 Y + R++DE HRFAIT HR+ K + S LD I GIGP + LL+ FG++K I + Sbjct: 519 GFYLMTRIQDEVHRFAITFHRQTHAKNSLVSRLDSIKGIGPKSRTKLLREFGSLKKIKEA 578 Query: 585 SPETLASIEGISKKIACKIY 604 S + L G++ A + Sbjct: 579 SIDDLRKA-GLTLTQAQAVK 597 >gi|325684266|gb|EGD26439.1| excinuclease ABC subunit C [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 607 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 175/620 (28%), Positives = 285/620 (45%), Gaps = 48/620 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +PE G Y M D+ G+V+YVGK+ NL+ R++SY S+ R ++ I + Sbjct: 16 KLKLLPEKAGCYLMKDVKGKVIYVGKSKNLKNRVRSYFKSSQEGRR-AELVKNIADYDII 74 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V ++ EA LLE +IK+ +P +N+ L+ +PYI IT+ K P +G Y Sbjct: 75 VVDSDKEAFLLEVTLIKKYQPYYNVALKSGTGYPYIEITN-EKNPQTRLTSIVYKDKGYY 133 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A T+ +Q+ F LR C+ RPCL + + +C G C E+ +Y Sbjct: 134 FGPYPNVYAASATLKFIQKVFPLRRCSGYT----GRPCLYYHMGQCLGSCFKEVPQSEYD 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 E + + K+FL+G +K+ + M QA+ ++E A RD+L + I N Sbjct: 190 EQIKKIKRFLNGDIQEVKKDLTNKMLQASADLEFERAGELRDQLKYIEETVEKQKIISND 249 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F+ Y +++ IQ F + + E+ F+ QFY K Sbjct: 250 HTQRDIFNYYVDRSWISIQVFFLRQAKLLRRESHMFPLTDETDPEDEFMSFIAQFYAQKN 309 Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P +L+ + ++ L K P++G+K ++E A NA K Sbjct: 310 RVKPREVLVPKGIDQDELAAAIGIKVRT-------PQRGQKASLMEMARENAQLKLDDKF 362 Query: 357 S----TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + ++ K LP+ IE +D+SHI G V +VV + K Y Sbjct: 363 RLLELGQRKTKGAQEEIFKALGLPYGSY-IESFDHSHIQGADPVSALVVFKDGEPFKTGY 421 Query: 413 RKFNLHPNDVKTQ--DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 RKF L + D+ R V+ RR+S+L+K E PD++++D Sbjct: 422 RKFKLKGEVEHQKSADEVGNTREVVRRRYSRLLKEHE--------------RMPDLILMD 467 Query: 471 GGKGQLSAAQGV-LKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEALVL---NMRDP 525 GG+ Q+ A + V +LN++ I + + K K + KG+ L + + Sbjct: 468 GGQIQVEACEDVLRNELNLD--IPVAGMVKDDKHRTNHLLYGDPFKGQPFKLIPMDPKSE 525 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 Y + R++DE HRFAIT HR+ K + S LD I GIGP + LL+ FG++K I + Sbjct: 526 GFYLMTRIQDEVHRFAITFHRQTHAKNSLVSRLDSIKGIGPKSRTKLLREFGSLKKIKEA 585 Query: 585 SPETLASIEGISKKIACKIY 604 S + L G++ A + Sbjct: 586 SIDDLRKA-GLTLTQAQAVK 604 >gi|282932489|ref|ZP_06337914.1| excinuclease ABC, C subunit [Lactobacillus jensenii 208-1] gi|281303438|gb|EFA95615.1| excinuclease ABC, C subunit [Lactobacillus jensenii 208-1] Length = 607 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 173/622 (27%), Positives = 277/622 (44%), Gaps = 46/622 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +PE PG Y M +I G V+YVGK+ NL+ R++SY S R ++ +I + Sbjct: 16 KLKLLPEQPGCYLMKNINGTVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVKEIADFDII 74 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 ++ E+ LLE +IK+ +P +N+ L+ +PYI IT+ K P G Y Sbjct: 75 TVTSDKESFLLEITLIKKYQPYYNVQLKQGTGYPYIEITN-EKDPQTRLTSIVHKDNGYY 133 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A + T+ +Q+ + LR C+ H+ RPCL + + +C G C E+ KY Sbjct: 134 FGPYPNVYAAQATLRFIQKVWPLRRCSG----HQGRPCLYYHMGQCLGACFQEVPRSKYE 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + + K+FL+G +K+++ M A+ ++E A RD+L + I N Sbjct: 190 AQIAKIKRFLNGDIGQVKQELTEKMQLASSNLEFERAAEIRDQLRYIEQTVEKQKIISND 249 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F+ Y +K+ +Q F + T S F+ QFY K Sbjct: 250 HTQRDIFNFYVDKSWISVQIFFLRQAKLLRRETKMFPLMDLSEPKDEFMSFIVQFYNQKN 309 Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352 P+ IL+ + + +L E+ K P++G KR +++ A NA Sbjct: 310 RILPKEILVPKGLDNDNLSEVLGVKVRT-------PQRGTKRDLLKMAKDNAKLKLDEKF 362 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + K LP+ IE +D+SHI G V VV + K Y Sbjct: 363 RLLELGNRKTKGAQAEIFKALGLPYGS-IIESFDHSHIQGTDPVSACVVFKDGEPFKTAY 421 Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 RK+ L D+ R V+ RR+S+++K PD++++D Sbjct: 422 RKYKLKGEVEHQNGADEVGNTREVVRRRYSRMLKEH--------------TRLPDLILMD 467 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEALVL---NMRDPI 526 GG+ Q+ A VL+ + I + + K F G+ L L N + Sbjct: 468 GGQIQVDACLDVLRN-ELNCDIPVAGMVKDNHHHTNHLIFGDPINGKPLELIPMNPKSEG 526 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 Y + R++DE HRFAIT HR+ K + S LD I GIGP + LL+ FG++K I +S Sbjct: 527 FYLMTRIQDEVHRFAITFHRQTHAKNSLSSKLDGIKGIGPKSRNKLLKKFGSLKKIKDAS 586 Query: 586 PETLASIEGISKKIACKIYNHF 607 E L G++ A + Sbjct: 587 IEELQDA-GLTLPQAQSVKLTL 607 >gi|238855217|ref|ZP_04645536.1| excinuclease ABC subunit C [Lactobacillus jensenii 269-3] gi|260664580|ref|ZP_05865432.1| excinuclease ABC, C subunit [Lactobacillus jensenii SJ-7A-US] gi|238832109|gb|EEQ24427.1| excinuclease ABC subunit C [Lactobacillus jensenii 269-3] gi|260561645|gb|EEX27617.1| excinuclease ABC, C subunit [Lactobacillus jensenii SJ-7A-US] Length = 600 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 173/622 (27%), Positives = 277/622 (44%), Gaps = 46/622 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +PE PG Y M +I G V+YVGK+ NL+ R++SY S R ++ +I + Sbjct: 9 KLKLLPEQPGCYLMKNINGTVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVKEIADFDII 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 ++ E+ LLE +IK+ +P +N+ L+ +PYI IT+ K P G Y Sbjct: 68 TVTSDKESFLLEITLIKKYQPYYNVQLKQGTGYPYIEITN-EKDPQTRLTSIVHKDNGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A + T+ +Q+ + LR C+ H+ RPCL + + +C G C E+ KY Sbjct: 127 FGPYPNVYAAQATLRFIQKVWPLRRCSG----HQGRPCLYYHMGQCLGACFQEVPRSKYE 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + + K+FL+G +K+++ M A+ ++E A RD+L + I N Sbjct: 183 AQIAKIKRFLNGDIGQVKQELTEKMQLASSNLEFERAAEIRDQLRYIEQTVEKQKIISND 242 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F+ Y +K+ +Q F + T S F+ QFY K Sbjct: 243 HTQRDIFNFYVDKSWISVQIFFLRQAKLLRRETKMFPLMDLSEPKDEFMSFIVQFYNQKN 302 Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352 P+ IL+ + + +L E+ K P++G KR +++ A NA Sbjct: 303 RILPKEILVPKGLDNDNLSEVLGVKVRT-------PQRGTKRDLLKMAKDNAKLKLDEKF 355 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + K LP+ IE +D+SHI G V VV + K Y Sbjct: 356 RLLELGNRKTKGAQAEIFKALGLPYGS-IIESFDHSHIQGTDPVSACVVFKDGEPFKTAY 414 Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 RK+ L D+ R V+ RR+S+++K PD++++D Sbjct: 415 RKYKLKGEVEHQNGADEVGNTREVVRRRYSRMLKEH--------------TRLPDLILMD 460 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEALVL---NMRDPI 526 GG+ Q+ A VL+ + I + + K F G+ L L N + Sbjct: 461 GGQIQVDACLDVLRN-ELNCDIPVAGMVKDNHHHTNHLIFGDPINGKPLELIPMNPKSEG 519 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 Y + R++DE HRFAIT HR+ K + S LD I GIGP + LL+ FG++K I +S Sbjct: 520 FYLMTRIQDEVHRFAITFHRQTHAKNSLSSKLDGIKGIGPKSRNKLLKKFGSLKKIKDAS 579 Query: 586 PETLASIEGISKKIACKIYNHF 607 E L G++ A + Sbjct: 580 IEELQDA-GLTLPQAQSVKLTL 600 >gi|260101651|ref|ZP_05751888.1| excision endonuclease subunit UvrC [Lactobacillus helveticus DSM 20075] gi|260084552|gb|EEW68672.1| excision endonuclease subunit UvrC [Lactobacillus helveticus DSM 20075] Length = 600 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 174/619 (28%), Positives = 287/619 (46%), Gaps = 46/619 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +PE PG Y M DI G V+YVGK+ NL+ R++SY + R ++ +I + Sbjct: 9 KLKLLPEKPGCYLMKDINGTVIYVGKSKNLKNRVRSYF-KSMQVGRRAELVREIRDYDII 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T+ EA LLE +IK+ +P +N+ L+ +PYI IT +H P G Y Sbjct: 68 TVSTDKEAFLLEITLIKKYQPYYNVQLKQGTGYPYIEITREHD-PQTRLTSIVCKDVGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A + T+ +Q+ F LR C RPCL + + +C G C ++ ++Y Sbjct: 127 FGPYPNVYAAQATLKFIQKVFPLRRCHGYQ----GRPCLYYHMGQCLGACFKKVPQKEYD 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 E + + K+FL+G +K+ + + M QA+ + ++E A RD+L + I N Sbjct: 183 EQIKKIKRFLNGDIGAVKQDLTQKMEQASEQLEFERAAEIRDQLKYIEETVEKQKIISND 242 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 + D F+ Y +K+ IQ F + T + + F+ QFY K Sbjct: 243 NTQRDIFNYYVDKSWISIQIFFLRQAKLLRRETRMFPLTDTTDPEDAFTSFIVQFYGQKN 302 Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P+ +L+ + +L E+ V + P++G+K+ +++ A NA K Sbjct: 303 RVLPKEVLIPAGFDNDTLAEVL-------TVPVRTPQRGQKKSLLDMAKDNAKLKLDDKF 355 Query: 357 S----TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + K+ LP+ IE +D+SHI G V +VV + K Y Sbjct: 356 RLLELGNRKTKGAQKEIFDALGLPYG-HIIESFDHSHIQGADPVSALVVFKDGEPDKTSY 414 Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 RK+ L D+ R V+ RR+ +L++ + + PD++++D Sbjct: 415 RKYKLKGEVEHQNGGDEVRNTREVVRRRYGRLLREHKKM--------------PDLILMD 460 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEA---LVLNMRDPI 526 GG+ Q+ A + VL+ + I + + K K F G + LN + Sbjct: 461 GGQIQVDACEDVLRN-ELNLNIPVAGMVKDDKHRTNHLLFGDPINGVPLKLIPLNPKSEG 519 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 Y + R++DE HRFAIT HR+R K A S LD I GIGP + LL+ FG++K I +S Sbjct: 520 FYLMTRIQDEVHRFAITFHRRRHAKNALSSRLDSIKGIGPKSRNKLLRKFGSLKKIKEAS 579 Query: 586 PETLASIEGISKKIACKIY 604 + L + G++ A + Sbjct: 580 VDDLRAA-GLTLPQAQTVK 597 >gi|29840587|ref|NP_829693.1| excinuclease ABC subunit C [Chlamydophila caviae GPIC] gi|33301870|sp|Q821V5|UVRC_CHLCV RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|29834937|gb|AAP05571.1| excinuclease ABC, subunit C [Chlamydophila caviae GPIC] Length = 605 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 180/617 (29%), Positives = 296/617 (47%), Gaps = 43/617 (6%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFT 61 + +P PGVY M D +G VLY+GKA NL+ RI +Y + RI ++ + I Sbjct: 8 PKLVPTSPGVYLMKDDSGEVLYIGKAKNLRNRITTYFQKQGDSRERIPFLMKKTTTIETI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS---STIQ 118 + E EALLLE N+IK+ P++N+LL+DDK+F + I+ H P + R S+ + Sbjct: 68 LVSNETEALLLENNLIKKHHPKYNVLLKDDKTFFCLAISLTHPWPKIDAIRTKAITSSKR 127 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 FGP+ S +A + + + F LR+C++ F R RPC+L+++KRC PC + E Sbjct: 128 QIIFGPYVSAEACRTLLEVISQWFPLRTCSNREFASRRRPCILYEMKRCLAPCVHLCTHE 187 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 +Y E + +A FL G + + + +++ +A+ ++ +E A I+ L + Sbjct: 188 EYEETLEKAVLFLKGKVSEIIQDLEKSIEKASQEQKFEQAGIYYRTLKLIQQAMEKQHVE 247 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + +D LY I G+ G F +++ + S+ L+ + Sbjct: 248 KFHFQNIDAIGLYRKYQETVITVLTVRSGKLLGARHFPFSENAQEDTDLLSSFILQYYAN 307 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P+ IL L + ++ PK G ++++ A NA Sbjct: 308 QPQTPKEILTPIPLNIPELP---YLLNKDTPPQLRSPKTGYGKELLTLAKNNAK---VHA 361 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 +T S + ++ K P P RIE YDN+H+ G VG +V + F YR F Sbjct: 362 ETTTQSSSLPYEEMKKILKSPDYPYRIECYDNAHLQGSHGVGVYIVYENDAFSPKSYRTF 421 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 ++ +D A VL RRFS L S PD++++DGG+ Q Sbjct: 422 SISS---LAHNDLATFHEVLSRRFSSLT-----------------SSLPDMIVIDGGRAQ 461 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSA---GMEKFFVKK-GEALVLNMRDPILYFIQ 531 S A+ LK+LN+ I ++S+AK + EK F + + L +L F Q Sbjct: 462 YSQAKKTLKELNLTG-IQVVSLAKEASNHSSSLRNEKLFCDTFPQGIQLAPTSKLLQFFQ 520 Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +LRDEAHRFAI+ HR++R K P ++I GIG ++++ LLQ F + K + ++S L + Sbjct: 521 KLRDEAHRFAISKHRRKRYKDLLFPQEKIPGIGEVKRKRLLQKFKSWKQVMKASQGELEA 580 Query: 592 IEGISKK-----IACKI 603 I G++KK +A ++ Sbjct: 581 IPGLTKKDIQQLLAKQV 597 >gi|225018481|ref|ZP_03707673.1| hypothetical protein CLOSTMETH_02428 [Clostridium methylpentosum DSM 5476] gi|224948752|gb|EEG29961.1| hypothetical protein CLOSTMETH_02428 [Clostridium methylpentosum DSM 5476] Length = 609 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 174/618 (28%), Positives = 304/618 (49%), Gaps = 30/618 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRF 60 + + + PGVY M D G V+YVGKA L+ R+ SY +N+ H ++ M+S + + F Sbjct: 10 KARNLTDMPGVYLMKDNTGEVIYVGKAKVLKNRVSSYFRNNSSHNEKVRKMVSNVEDFDF 69 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E EAL+LE ++IK+ P++NILL+DDK + YI ++ P + + + Sbjct: 70 IVTNSEFEALVLECSLIKQYNPKYNILLKDDKGYHYIKVS-DDIFPRI--TAEKQKVGSG 126 Query: 121 YF-GPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEIS 176 F GP+ S AV + ++ R F L +C + +RPCL + IK+C G CTG+IS Sbjct: 127 IFVGPYTSSFAVRQAVDEANRVFMLPTCNRKFNGRKLRNSRPCLNYYIKQCMGACTGKIS 186 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + Y + + +A ++ GG+ E++ R M +A + D+E A+ R+R+ A+ + Sbjct: 187 RDDYNDLIKQAMDYIKGGSTQSVEQLTRQMEEAADRLDFEKAMELRNRIKAIQKVAESQK 246 Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 I + D ++ N + C F G+ + +K + ++ S FL ++ Sbjct: 247 IILDEHKNLDVIAMAQNGLVVCFVILKFREGRLVDKVDYTIKEVYD--PIEVRSDFLARY 304 Query: 294 YT-DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 Y+ + P+ + + E+ +T+LL K G+KV + P++GE +++I+ A+ NA Sbjct: 305 YSTTQDIPKVVEIDEQGLDTALLSEYLTKLAGHKVTLFAPQRGEGKRLIQMAMNNAAEQL 364 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + K+ L + T+ L P+ IE YD S++ VG MVV K+ Y Sbjct: 365 SYKVKRTGREVAALDELTRLLGLSRTPEYIEAYDISNLGDSGIVGGMVVFENGTPKKSAY 424 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472 +KF + D +DD A MR +L RR S+ + +E F PD+++LDGG Sbjct: 425 KKFAIKSTDT--RDDYASMREMLSRRLSRYKEEQE--------TGEGFGRLPDLILLDGG 474 Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532 KG ++A V+ +E I + K + ++G + ++ + R Sbjct: 475 KGHVAAVGEVIDSFGLE--IPYFGMVKDDRHRTRA---IARQGGEIAISTFKSAFSLVTR 529 Query: 533 LRDEAHRFAITTHRKRRKKAAYS-PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 ++DE HR+ I+ RK KK + L +I GIG + L + F T ++ + +A Sbjct: 530 IQDEVHRYTISYQRKVHKKTTFELELTKIKGIGEKKALALFRHFKTKTAFRQADVDEIAK 589 Query: 592 IEGISKKIACKIYNHFHK 609 + I+ + A +I + Sbjct: 590 VGKITTEKAKEIQQFMNN 607 >gi|261878877|ref|ZP_06005304.1| excision endonuclease subunit UvrC [Prevotella bergensis DSM 17361] gi|270334517|gb|EFA45303.1| excision endonuclease subunit UvrC [Prevotella bergensis DSM 17361] Length = 618 Score = 426 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 178/623 (28%), Positives = 301/623 (48%), Gaps = 48/623 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 MPE PG YQ D ++YVGKA L+ R+ +Y H + ++S+I++I +TV Sbjct: 19 SMPERPGSYQFYDKEHHIIYVGKAKKLKSRVSTYFHKEVDRFKTKVLVSKIHDITYTVVN 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E +ALLLE ++IK+ PR+N+LL+D K++P I IT+ P +YK R + G+YFGP Sbjct: 79 SEEDALLLENSLIKKYNPRYNVLLKDGKTYPSICITN-EYYPRIYKTRTINRKHGTYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFR-----HRTRPCLLFQIKRCSGPCTGEISSEK 179 + V ++ ++ + + F R C + + ++ RPCL + I C G C G+ S E+ Sbjct: 138 YPHVASMYNILSLINKVFKPRRCRQPITKEGVAQNKYRPCLDYHIHNCKGCCIGKQSHEE 197 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 YME + +AK+ L G L + + + M Q + +E A + R L ++ + Sbjct: 198 YMENIRQAKEVLKGNTRQLSDWLYQKMMQKAEEMKFEEAEELKQRYIMLKDFVAKSEVVS 257 Query: 240 NRMDCFSLYHN-----KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 ++ ++ K A I G + TF K + T+ +L + + Sbjct: 258 YTINDVDVFTITEDELKKNAFINYIHVKNGTISQSFTFEYKRKLDETHEDLLIQAIPEIR 317 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 ++ E L + +P++G+K+ ++E + +N + Sbjct: 318 ARFNSKAKEVIVPFEMEWKL----------KDAEFFIPQRGDKKHLLELSEMNGKQYKFD 367 Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 +L E ++K+ K LP +P IE +DNS+I G AV VV Sbjct: 368 RLKQAEKLNPEQKQTRLMKELQLKLGLPTLPYHIECFDNSNISGTDAVAGCVVYKGMKPS 427 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 K YRK+N+ V DD A M+ V+ RR+S+++K +L PD++I Sbjct: 428 KKDYRKYNIKT--VVGPDDYASMQEVVRRRYSRMMKEGTSL--------------PDLII 471 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 DGGKGQ+ + V++ ++ I I +AK + E + + L + Sbjct: 472 TDGGKGQMEVVREVVEDE-LKLSIPIAGLAKDDRHRT-NELLHGFPPQVIGLKTDTELFR 529 Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 + +++DE HR+AI+ HR +R K A +S LD I GIGP K +L++F +V I + P+ Sbjct: 530 VLTQIQDEVHRYAISFHRDKRSKHALHSELDNIKGIGPKTKEKILKAFKSVNNIKVAPPD 589 Query: 588 TLASIEGISKKIACKIYNHFHKN 610 LA+I G +K A + +F K+ Sbjct: 590 ELATIIGSNK--AKIVTEYFEKS 610 >gi|262046036|ref|ZP_06019000.1| excinuclease ABC, C subunit [Lactobacillus crispatus MV-3A-US] gi|260573995|gb|EEX30551.1| excinuclease ABC, C subunit [Lactobacillus crispatus MV-3A-US] Length = 600 Score = 425 bits (1092), Expect = e-116, Method: Composition-based stats. Identities = 176/622 (28%), Positives = 283/622 (45%), Gaps = 46/622 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +PE PG Y M DI G V+YVGK+ NL+ R++SY S R ++ +I + Sbjct: 9 KLKLLPEKPGCYLMKDINGTVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVREIRDYDII 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T+ EA LLE +IK+ +P +N+ L+ +PYI IT +H + G Y Sbjct: 68 TVSTDKEAFLLEITLIKKYQPYYNVQLKQGTGYPYIEITREHDL-QTRLTSIVHKDGGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A + T+ +Q+ F LR C RPCL + + +C G C ++ ++Y Sbjct: 127 FGPYPNVYAAQATLKFIQKVFPLRRCHGYQ----GRPCLYYHMGQCLGACFKKVPQKEYE 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 E + + K FL+G ++K+ + M QA ++E A RD+L + I N Sbjct: 183 EQIKKIKSFLNGDIASVKQSLTEKMAQAASNLEFERAAEIRDQLKYIEETVEKQKIISND 242 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 + D F+ Y +K+ +Q F + T + + F+ QFY + Sbjct: 243 NTQRDIFNYYVDKSWISVQIFFLRQAKLLRRETRMFPLTDATDPEDAFTSFIVQFYEQRN 302 Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P+ IL+ E + +L E+ KV + P++G+K+ +++ A NA K Sbjct: 303 RVLPKEILIPEGFDNATLAEVL-------KVPVRTPQRGQKKSLLDMAKDNAKLKLDDKF 355 Query: 357 S----TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + K+ LP+ IE +D+SHI G V +VV + K Y Sbjct: 356 RLLELGNRKTKGAQKEIFDALGLPYG-HFIESFDHSHIQGADPVSALVVFKDGEPEKTAY 414 Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 RK+ L D+ R V+ RR+ +L++ + PD++++D Sbjct: 415 RKYKLKGEVEHQNGGDEVRNTREVVRRRYGRLLREHK--------------RMPDLILMD 460 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEA---LVLNMRDPI 526 GGK Q+ A VL+ + I + + K K F G + LN + Sbjct: 461 GGKIQVDACLDVLRN-ELNLNIPVAGMVKDDKHRTNHLLFGDPINGIPLKLIPLNPKSEG 519 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 Y + R++DE HRFAIT HR+R K A S LD I GIGP + LL+ FG++K I +S Sbjct: 520 FYLMTRIQDEVHRFAITFHRRRHAKNALSSRLDSIKGIGPKSRNKLLREFGSLKKIKEAS 579 Query: 586 PETLASIEGISKKIACKIYNHF 607 + L G++ A + Sbjct: 580 IDDLRRA-GLTLTQAQTVKLTL 600 >gi|312871397|ref|ZP_07731492.1| excinuclease ABC, C subunit [Lactobacillus iners LEAF 3008A-a] gi|312872312|ref|ZP_07732382.1| excinuclease ABC, C subunit [Lactobacillus iners LEAF 2062A-h1] gi|311092135|gb|EFQ50509.1| excinuclease ABC, C subunit [Lactobacillus iners LEAF 2062A-h1] gi|311093050|gb|EFQ51399.1| excinuclease ABC, C subunit [Lactobacillus iners LEAF 3008A-a] Length = 605 Score = 425 bits (1092), Expect = e-116, Method: Composition-based stats. Identities = 167/627 (26%), Positives = 292/627 (46%), Gaps = 46/627 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+CPG Y M D+ G+V+YVGK+ NL+ R++SY S R ++ IN+ Sbjct: 9 KLKLLPDCPGCYLMKDLNGKVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVRDINDFEII 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V ++ EA LLE +IK+ +P +N+ L++ +P+I IT+ + P + +G Y Sbjct: 68 VVSSDKEAFLLEITLIKKYQPYYNVQLKNGGGYPFIEITN-ERDPEVKLTSIIKKDKGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A + T+ +Q+ + LR C+ + RPCL + + +C G C ++SS+KY Sbjct: 127 FGPYPNVYAAQATLKFIQKMWPLRRCSGKL----GRPCLYYNMGQCLGSCFKKVSSDKYD 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + + K FL+G K ++ + M A+ ++E A +RD+L+ + + + Sbjct: 183 HQIKQIKCFLNGDITKAKTELIKKMQIASDNLEFERAGEYRDQLSYIEQTVEKQKIMLHD 242 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--D 296 + D F+ Y ++ IQ F + T F+ QFY + Sbjct: 243 KLQRDIFNFYVSQGWISIQILFIRQSKLMRRETKIFNLTDIDKAKDEFESFIVQFYNAKN 302 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352 + P IL+ + +SL + + P +G+K+ +++ A N+ Sbjct: 303 RLLPNEILVPKGVNASSLAAVLKVRVKT-------PSRGQKKALLDMAYENSKIKLDEKI 355 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + ++ LP+ RIE +D+SHI G V +VV + K++Y Sbjct: 356 RLLELNNLKTKGAQEEIFNALGLPYGS-RIESFDHSHIQGTDPVSALVVFIDGMPAKHEY 414 Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 RKF L D+ R V+ RR+S+++K P+++++D Sbjct: 415 RKFKLKGEIEHQNGADEVKNTREVVRRRYSRMLKEH--------------LVLPNLILMD 460 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF----FVKKGEALVLNMRDPI 526 GGK Q+ A VL+ + I + + K F ++ + L+ + Sbjct: 461 GGKIQVDACLDVLRN-ELNVNIPVAGMVKDNCHRTNHLIFGDPTVGEELRTIPLDSKSQA 519 Query: 527 LYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 Y I R++DE HRFAIT HR K + S LDEI GIGP + LL++FG++K I +S Sbjct: 520 FYLITRIQDEVHRFAITFHRNLHNKNSLASKLDEIKGIGPKSRNKLLKNFGSLKKIREAS 579 Query: 586 PETLASIEGISKKIACKIYNHFHKNTS 612 E L + G++ A + + + Sbjct: 580 IEDLKGV-GLTLTQAQSVKLVLENSQN 605 >gi|325912813|ref|ZP_08175191.1| excinuclease ABC, C subunit [Lactobacillus iners UPII 60-B] gi|325477806|gb|EGC80940.1| excinuclease ABC, C subunit [Lactobacillus iners UPII 60-B] Length = 605 Score = 425 bits (1092), Expect = e-116, Method: Composition-based stats. Identities = 168/627 (26%), Positives = 292/627 (46%), Gaps = 46/627 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+CPG Y M D+ G+V+YVGK+ NL+ R++SY S R ++ IN+ Sbjct: 9 KLKLLPDCPGCYLMKDLNGKVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVRDINDFEII 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V ++ EA LLE +IK+ +P +N+ L++ +P+I IT+ K P + +G Y Sbjct: 68 VVSSDKEAFLLEITLIKKYQPYYNVQLKNGGGYPFIEITN-EKDPEVKLTSIIKKDKGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A + T+ +Q+ + LR C+ + RPCL + + +C G C ++SS+KY Sbjct: 127 FGPYPNVYAAQATLKFIQKMWPLRRCSGKL----GRPCLYYNMGQCLGSCFKKVSSDKYD 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + + K FL+G K ++ + M A+ ++E A +RD+L+ + + + Sbjct: 183 HQIKQIKCFLNGDITKAKTELIKKMQIASDNLEFERAGEYRDQLSYIEQTVEKQKIMLHD 242 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--D 296 + D F+ Y ++ IQ F + T F+ QFY + Sbjct: 243 KLQRDIFNFYVSQGWISIQILFIRQSKLMRRETKIFNLTDIDKAKDEFESFIVQFYNAKN 302 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352 + P IL+ + +SL + + P +G+K+ +++ A N+ Sbjct: 303 RLLPNEILVPKGVNASSLAAVLKVRVKT-------PSRGQKKALLDMAYENSKIKLDEKI 355 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + ++ LP+ RIE +D+SHI G V +VV + K++Y Sbjct: 356 RLLELNNLKTKGAQEEIFNALGLPYGS-RIESFDHSHIQGTDPVSALVVFIDGMPAKHEY 414 Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 RKF L D+ R V+ RR+S+++K P+++++D Sbjct: 415 RKFKLKGEIEHQNGADEVKNTREVVRRRYSRMLKEH--------------LVLPNLILMD 460 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF----FVKKGEALVLNMRDPI 526 GGK Q+ A VL+ + I + + K F ++ + L+ + Sbjct: 461 GGKIQVDACLDVLRN-ELNVNIPVAGMVKDNCHRTNHLIFGDPTVGEELRTIPLDSKSQA 519 Query: 527 LYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 Y I R++DE HRFAIT HR K + S LDEI GIGP + LL++FG++K I +S Sbjct: 520 FYLITRIQDEVHRFAITFHRNLHNKNSLASKLDEIKGIGPKSRNKLLKNFGSLKKIREAS 579 Query: 586 PETLASIEGISKKIACKIYNHFHKNTS 612 E L + G++ A + + + Sbjct: 580 IEDLKGV-GLTLTQAQSVKLVLENSQN 605 >gi|15618849|ref|NP_225135.1| excinuclease ABC subunit C [Chlamydophila pneumoniae CWL029] gi|15836473|ref|NP_300997.1| excinuclease ABC subunit C [Chlamydophila pneumoniae J138] gi|16752092|ref|NP_445458.1| excinuclease ABC subunit C [Chlamydophila pneumoniae AR39] gi|33242305|ref|NP_877246.1| excinuclease ABC subunit C [Chlamydophila pneumoniae TW-183] gi|8134801|sp|Q9Z6W6|UVRC_CHLPN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|4377263|gb|AAD19078.1| Excinuclease ABC, Subunit C [Chlamydophila pneumoniae CWL029] gi|7189835|gb|AAF38706.1| excinuclease ABC, subunit C [Chlamydophila pneumoniae AR39] gi|8979314|dbj|BAA99148.1| excinuclease ABC, subunit C [Chlamydophila pneumoniae J138] gi|33236816|gb|AAP98903.1| exinuclease ABC subunit C [Chlamydophila pneumoniae TW-183] Length = 603 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 185/607 (30%), Positives = 301/607 (49%), Gaps = 38/607 (6%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFT 61 + +P PGVY M D+ +VLY+GKA NL+ R+ SY H + RI ++ + +I Sbjct: 8 LKLIPSSPGVYLMKDVHDQVLYIGKAKNLKNRLASYFHEKGDSRERIPFLMKKTASIETI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS---STIQ 118 V E EALLLE N+IK+ P++N+LL+DDK+F + I+ H P + R S+ + Sbjct: 68 VVSNETEALLLENNLIKQHHPKYNVLLKDDKTFFCLAISLSHSWPKVEAIRTKAITSSQR 127 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 FGP+ S +A + + + F LR+C+D F R RPC+L+ +KRC PC G + E Sbjct: 128 QLIFGPYVSAEACHTLLEVISQWFPLRTCSDREFALRKRPCILYDMKRCLAPCVGYCTPE 187 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 +Y + +A FL G + + + + + +A+ ++E A + L+ + Sbjct: 188 EYQGTLDKAILFLKGKIEEVVKDLEKVIQKASDNLEFEQAANYYRTLSLIKQAMAKQQVE 247 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + +D LY +K + G+ G F +++ + S+ L+ + + Sbjct: 248 KFHFQNIDALGLYRHKQRTILTLLTVRSGKLLGARHFSFFENAQEDQDLLSSFILQYYVS 307 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P+ IL E +L + + ++ PK G +++++ A NA Sbjct: 308 QPYIPKEILTPLPLEFPTLSYVLNAE---SPPRLRSPKTGYGKELLDLAYRNAKAYAATT 364 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L + +DF + P RIE YDN+H+ G A G +V NGF QYR F Sbjct: 365 LPSSTLPY---QDFQNILRMSQYPYRIECYDNAHMQGAHATGVYIVFENNGFDPKQYRTF 421 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 ++ + KTQ+D A++ VL RRF L + PD++++DGGK Sbjct: 422 SI--DSEKTQNDLALLEEVLLRRFHSLT-----------------TALPDMIVVDGGKTH 462 Query: 476 LSAAQGVLKKLNVENRITIISIAK---GPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQ 531 + + +++ LN+ I +++IAK R EK F + E L +L F Q Sbjct: 463 YNKTKKIIQTLNLTG-IQVVTIAKEKSNHSRGLNKEKIFCETFPEGFSLPPTSNLLQFFQ 521 Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 LRDEAHRFAI+ HRK+R KA + ++I GIG ++++ LLQ F + K + SS E L + Sbjct: 522 ILRDEAHRFAISKHRKKRGKALF-EQEKIPGIGEVKRKRLLQKFKSWKQVMLSSQEELEA 580 Query: 592 IEGISKK 598 I G++KK Sbjct: 581 IPGLTKK 587 >gi|257053701|ref|YP_003131534.1| excinuclease ABC subunit C [Halorhabdus utahensis DSM 12940] gi|256692464|gb|ACV12801.1| excinuclease ABC, C subunit [Halorhabdus utahensis DSM 12940] Length = 579 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 183/611 (29%), Positives = 277/611 (45%), Gaps = 51/611 (8%) Query: 5 QMPECPGVYQMLDI---AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 +P PGVYQ LD VLYVGKA +L+ R++SY ++ RI M+ + +I Sbjct: 12 DLPTEPGVYQFLDSTRGDATVLYVGKAVDLRDRVRSY--ADPRGERIRRMVERAADIDVV 69 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT TE +ALLLEAN IKR +PR+N+ LRDDKS+P + +T H P + RD Sbjct: 70 VTDTETQALLLEANFIKRYQPRYNVRLRDDKSYPLVQLT-DHPTPRIEITRDP-DEGADV 127 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPF VE +++ T+ LR C+D + +R RPCL + I CS PCTGEI+ Y Sbjct: 128 FGPFTDKSQVETVCKAIRETYGLRGCSDHKYANRDRPCLDYDIGLCSAPCTGEINPATYR 187 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQ-----NHND 236 E V ++F G L E I M +A +E A RDRLA + Sbjct: 188 EDVAAIRRFFRGETGVLAEPIRAEMERAADSAAFERAANLRDRLAVVESFHTGGGGAVES 247 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + D ++ + A + G ++T + +L+ F+ Q+Y + Sbjct: 248 TQDRTTDVLAVALEGDAATVARLHSTGGSLVDRERHAVETPDDRRAGDVLAAFVPQYYAE 307 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 + P+ +LLSE + + V + VP G + +++ AL NA R Sbjct: 308 RELPDRLLLSERLPDDDVRSWLTS----AGVDVVVPGAGREATLVDLALKNARR------ 357 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + + L RIE +D SH G S VG V + K YR+ Sbjct: 358 --KTGQDDGVAALADALGLDAAD-RIEGFDVSHTGGGSVVGSDVCFVDGTPAKPDYRRKK 414 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 L DD A MR ++ R + + ++ PD++++DGG+GQL Sbjct: 415 LPE----GNDDYAAMRSLIGWRAERAVAGRDDRPD------------PDLLLIDGGEGQL 458 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 +AA+ L + + I + +AK +R E+ + P L +QR+RDE Sbjct: 459 AAAREALDAVGWD--IPAVGLAKAEERVITPERVYKWDD-------DAPQLQLLQRVRDE 509 Query: 537 AHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 AHRFA+ H R + LD++ G+GP + LL FG+V + +S L + G+ Sbjct: 510 AHRFAVQYHETLRD-DVSTALDDVPGVGPELRTRLLGRFGSVDGVREASLSELRDVPGVG 568 Query: 597 KKIACKIYNHF 607 + A I Sbjct: 569 EATAKTIRRQL 579 >gi|269302730|gb|ACZ32830.1| excinuclease ABC, C subunit [Chlamydophila pneumoniae LPCoLN] Length = 603 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 185/607 (30%), Positives = 301/607 (49%), Gaps = 38/607 (6%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFT 61 + +P PGVY M D+ +VLY+GKA NL+ R+ SY H + RI ++ + ++ Sbjct: 8 LKLIPSSPGVYLMKDVHDQVLYIGKAKNLKNRLASYFHEKGDSRERIPFLMKKTASVETI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS---STIQ 118 V E EALLLE N+IK+ P++N+LL+DDK+F + I+ H P + R S+ + Sbjct: 68 VVSNETEALLLENNLIKQHHPKYNVLLKDDKTFFCLAISLSHSWPKVEAIRTKAITSSQR 127 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 FGP+ S +A + + + F LR+C+D F R RPC+L+ +KRC PC G + E Sbjct: 128 QLIFGPYVSAEACHTLLEVISQWFPLRTCSDREFALRKRPCILYDMKRCLAPCVGYCTPE 187 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 +Y + +A FL G + + + + + +A+ ++E A + L+ + Sbjct: 188 EYQGTLDKAILFLKGKIEEVVKDLEKAIQKASDNLEFEQAANYYRTLSLIKQAMAKQQVE 247 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + +D LY +K + G+ G F +++ + S+ L+ + + Sbjct: 248 KFHFQNIDALGLYRHKQRTILTLLTVRSGKLLGARHFSFFENAQEDQDLLSSFILQYYVS 307 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P+ IL E +L + + ++ PK G +++++ A NA Sbjct: 308 QPYIPKEILTPLPLEFPTLSYVLNAE---SPPRLRSPKTGYGKELLDLAYRNAKAYAATT 364 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L + +DF + P RIE YDN+H+ G A G +V NGF QYR F Sbjct: 365 LPSSTLPY---QDFQNILRMSQYPYRIECYDNAHMQGAHATGVYIVFENNGFDPKQYRTF 421 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 ++ + KTQ+D A++ VL RRF L + PD++++DGGK Sbjct: 422 SI--DSEKTQNDLALLEEVLLRRFHSLT-----------------TALPDMIVVDGGKTH 462 Query: 476 LSAAQGVLKKLNVENRITIISIAK---GPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQ 531 + + +L+ LN+ I +++IAK R EK F + E L +L F Q Sbjct: 463 YNKTKKILQTLNLTG-IQVVTIAKEKSNHSRGLNKEKIFCETFPEGFSLPPTSNLLQFFQ 521 Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 LRDEAHRFAI+ HRK+R KA + ++I GIG ++++ LLQ F + K + SS E L + Sbjct: 522 ILRDEAHRFAISKHRKKRGKALF-EQEKIPGIGEVKRKRLLQKFKSWKQVMLSSQEELEA 580 Query: 592 IEGISKK 598 I G++KK Sbjct: 581 IPGLTKK 587 >gi|259500676|ref|ZP_05743578.1| excision endonuclease subunit UvrC [Lactobacillus iners DSM 13335] gi|302191365|ref|ZP_07267619.1| excinuclease ABC subunit C [Lactobacillus iners AB-1] gi|259168060|gb|EEW52555.1| excision endonuclease subunit UvrC [Lactobacillus iners DSM 13335] Length = 605 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 168/627 (26%), Positives = 294/627 (46%), Gaps = 46/627 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+CPG Y M D+ G+V+YVGK+ NL+ R++SY S R ++ IN+ Sbjct: 9 KLKLLPDCPGCYLMKDLNGKVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVRDINDFEII 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V ++ EA LLE +IK+ +P +N+ L++ +P+I IT+ + P + +G Y Sbjct: 68 VVSSDKEAFLLEITLIKKYQPYYNVQLKNGGGYPFIEITN-ERDPEVKLTSIIKKDKGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A + T+ +Q+ + LR C+ + RPCL + + +C G C E+SS++Y Sbjct: 127 FGPYPNVYAAQATLKFIQKMWPLRRCSGKL----GRPCLYYSMGQCLGSCFKEVSSDRYD 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + + K FL+G K ++ + M A+ ++E A +RD+L+ + + N Sbjct: 183 HQIKQIKCFLNGDITKAKTELIKKMQIASDNLEFERASEYRDQLSYIEQTVEKQKIMLND 242 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--D 296 + D F+ Y ++ IQ F + T F+ QFY + Sbjct: 243 KLQRDIFNFYVSQGWISIQILFIRQSKLMRRETKIFNLTDIDKAKDEFESFIVQFYNAKN 302 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352 + P IL+ + +SL + + + +P +G+K+ +++ A N+ Sbjct: 303 RLFPNEILVPKGVNASSLAAVLKVR-------VKIPSRGQKKALLDMAYENSKIKLDEKI 355 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + ++ LP+ RIE +D+SHI G V +VV + K++Y Sbjct: 356 RLLELNNLKTKGAQEEIFNALGLPYGS-RIESFDHSHIQGTDPVSALVVFIDGMPAKHEY 414 Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 RKF L D+ R V+ RR+S+++K P+++++D Sbjct: 415 RKFKLKGEIEHQNGADEVKNTREVVRRRYSRMLKEH--------------LVLPNLILMD 460 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF----FVKKGEALVLNMRDPI 526 GGK Q+ A VL+ + I + + K F ++ + L+ + Sbjct: 461 GGKIQVDACLDVLRN-ELNVNIPVAGMVKDNCHRTNHLIFGDPTVGEELRTISLDSKSQA 519 Query: 527 LYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 Y I R++DE HRFAIT HR K + S LDEI GIGP + LL++FG++K I +S Sbjct: 520 FYLITRIQDEVHRFAITFHRNLHNKNSLASKLDEIKGIGPKSRNKLLKNFGSLKKIREAS 579 Query: 586 PETLASIEGISKKIACKIYNHFHKNTS 612 E L + G++ A + + + Sbjct: 580 IEDLKGV-GLTLTQAQSVKLVLENSQN 605 >gi|15834793|ref|NP_296552.1| excinuclease ABC subunit C [Chlamydia muridarum Nigg] gi|7190209|gb|AAF39047.1| excinuclease ABC, subunit C [Chlamydia muridarum Nigg] Length = 601 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 187/615 (30%), Positives = 286/615 (46%), Gaps = 42/615 (6%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFT 61 + + PGVY M D G VLYVGKA NL+ R+ SY+ N + RI ++ + +I Sbjct: 11 LKNVSSSPGVYLMKDSQGVVLYVGKAKNLRNRLSSYLQKNGDSRERIPFLMKRTADIDTI 70 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD----SSTI 117 V E EALLLE N+IK+ +PR+N+LL+DDK+F + I+ +H P + R S Sbjct: 71 VVSNETEALLLENNLIKKYQPRYNVLLKDDKTFFCLSISLQHPWPKIEAIRTRALSPSKK 130 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 + FGP+ S +A + + F LR+C+D F R RPC+L+++KRC PC G S Sbjct: 131 KQLLFGPYVSAEACYALLEVISHWFPLRTCSDREFSTRQRPCVLYEMKRCLAPCVGFCSQ 190 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 +Y E + +A FL G + + +A+ + +E A L + Sbjct: 191 TEYQETLEKAILFLKGEVDTTIANLEEAIKKASQEHKFEHAAALYRTLTLIRQTMAKQHV 250 Query: 238 ---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 +D LY LA I + G+ G F +++ ++ S+ L+ + Sbjct: 251 EKFQAYDIDVLGLYRKGPLAIISVLSVYSGKLLGARHFTFPENAQEDSSLFSSFILQYYA 310 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 + P+ I + + L + KI PK ++++ A NA Sbjct: 311 ENTRIPKQIFVPVSPDSPELP---YLLNAAEPPKIRCPKTEYGKELLALAHKNAAEQAKP 367 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 S + ++ + F P RIE YDN+H+ G VG +V + F QYR Sbjct: 368 L----NSITLPYEELQQLFKFSQYPNRIECYDNAHLQGEHNVGVYIVFEKGSFSPKQYRT 423 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F++ DD A VL RRF L PD++++DGG+ Sbjct: 424 FSI----TSHGDDLAAFEEVLTRRFRSLTTE-----------------LPDLIVIDGGRN 462 Query: 475 QLSAAQGVLKKLNVENRITIISIAK---GPKRSAGMEKFFVKK-GEALVLNMRDPILYFI 530 Q AQ +L+KLN+ I ++SIAK R EK F + + ++LN IL F Sbjct: 463 QFRRAQHILEKLNLTG-IAVVSIAKESGNHSRGLQQEKLFCEAFPQGILLNPTSEILQFF 521 Query: 531 QRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 Q LRDEAHRFAI +R + KA + +I GIG + LLQ F + K I +S E L Sbjct: 522 QLLRDEAHRFAINRYRNKHSKAILTT-KKIPGIGKTKTTHLLQKFKSWKRILSASEEELK 580 Query: 591 SIEGISKKIACKIYN 605 +++G++KK +I Sbjct: 581 TVQGLTKKDIQRIQE 595 >gi|315187288|gb|EFU21044.1| excinuclease ABC, C subunit [Spirochaeta thermophila DSM 6578] Length = 610 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 172/620 (27%), Positives = 283/620 (45%), Gaps = 54/620 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E P PGVY M D G+V+YVGKA L+ R++SY+ + TH++ ++ +I + Sbjct: 15 QVEAAPSSPGVYLMRDEEGKVIYVGKAKVLRNRLRSYISGT-KDRKTTHLMRRVRSIEWI 73 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT TE +ALLLE +IK+ +P++NI L+D KS+P I +T P +++ R Y Sbjct: 74 VTDTEYDALLLENTLIKKYQPKYNIDLKDGKSYPVIRLT-AEDFPRVFRTRKIVHDGSRY 132 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + ++ ++ + R F LR C R R PCL + I RC PC +IS E Y+ Sbjct: 133 FGPYGNAHLLDLYLDFIDRFFPLRKC-RGPLRKRAHPCLYYHIGRCPAPCVDKISREDYL 191 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 V + + LSG +L+ + M +A + YE+A +RD L A+ I + + + Sbjct: 192 ARVEDVARLLSGEVEDLQTSLKGRMEEAASRLAYETAARYRDALQAVEEILKNEQKVVDF 251 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 + D + + AC G+ G + + + + ++ +R + D Sbjct: 252 AREKRDYAAYVREEPYACFVVFKMRDGKLVGRDAY-VTHAFDEDDEDFSNFLVRYYDADI 310 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 PE + L E K I + ++GE I+ + NA + L Sbjct: 311 ALPEELHL-----FQGTQEEILAPYLAGKFGIRLIREGEGHPILNLVVQNAREELARHLK 365 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + + + +L + LP P RIE +D +H+ G MV K++YR F + Sbjct: 366 IKGNPEAVL-ALQEALELPVPPVRIEGFDIAHLQGTFPYASMVQFLGGVPHKSEYRLFRV 424 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 DD +R V RR+++L + L PD++++DGGKGQ++ Sbjct: 425 KTLQGL-VDDYEALREVTARRYTRLKNERKPL--------------PDLILIDGGKGQVN 469 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A + VL L + I ++ +AK + E FF L+L R P L +Q +RDEA Sbjct: 470 AVREVLDALGLS-HIPLVGLAKQRE-----EIFFPHASAPLLLEERSPALRLLQYVRDEA 523 Query: 538 HRF----------AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 HRF K S L+ + GIG R LL +G++ I+R+ E Sbjct: 524 HRFATTAHARARAV---------KIDGSILETVEGIGKKRAVRLLTHYGSLDAIARAEAE 574 Query: 588 TLASIEGISKKIACKIYNHF 607 + + G + +A ++ Sbjct: 575 EIKEVAGCPEHVALRVKEAL 594 >gi|328947735|ref|YP_004365072.1| UvrABC system protein C [Treponema succinifaciens DSM 2489] gi|328448059|gb|AEB13775.1| UvrABC system protein C [Treponema succinifaciens DSM 2489] Length = 655 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 174/607 (28%), Positives = 286/607 (47%), Gaps = 36/607 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + P GVY + V+YVGKA NL+ R+ SY N + +IS+ +I + T Sbjct: 24 KAPLKSGVYLWRNEEQTVIYVGKAKNLKNRLTSYFSGN-KDIKTRLLISRARSIEYITTD 82 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 E EA LLE N+IK+ PR+NI L+D KS+P I +T K K P L+K R+ + YFGP Sbjct: 83 NEYEAFLLENNLIKKYSPRYNISLKDGKSYPVIKVT-KEKFPRLFKTRNITHDGSIYFGP 141 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F A++ + +L + LR C FR + PC+ + I RC PC + + Y EF+ Sbjct: 142 FPDASALDSFLETLYEIYPLRRCKK--FREKNFPCMYYHIGRCKAPCCKKTNESTYNEFI 199 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NR 241 E L G +K+ M +A ++E A RD + AL +Q+ N Sbjct: 200 EEICSLLEGKGEETVKKLQGQMKEAAKNLNFEKAARLRDGIKALEILQHRNIVESFEGTD 259 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D + + L G+ G + + +E + +++ F+ +Y +K Sbjct: 260 KDYIAPWREGELVSFTVLKMRGGKLLGRDNYRTVSLNEDS--ELIPEFMASYYNEKELIP 317 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIE---QALINAHRSHTQKLST 358 + +++ T ++ F+ YG K +I + A NA + Sbjct: 318 PQIYIMQSDGTEFMKRWIFETYGIKTEIIAVNENSPAVHKAAIGMAQQNAKE-DIVRRMR 376 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E +++ K+ +LP++P RIE +D +HI G V ++ K YR F L Sbjct: 377 ERGDFPAMEELKKELSLPNLPARIEGFDIAHIGGKFPVASLISFYNGNPDKKNYRYFRLK 436 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 D DD A M+ + RR+++LI ++ L PD++++DGG GQ++A Sbjct: 437 TTDGI-IDDFASMKEAVSRRYTRLINEKKEL--------------PDLILIDGGIGQVNA 481 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 +LK L+++ I I +AK + E + + L R L +QR+RDE H Sbjct: 482 VDSILKSLDLD--IPIAGLAKRDE-----EIYRPGNSMPIRLPKRSDALRLLQRVRDETH 534 Query: 539 RFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFA + +++ R K SP +I GIGP R LL++ FGT+K ++ S+ ++ + + Sbjct: 535 RFATSRNQELRTKENTVSPFTKIRGIGPKRDALLMKKFGTLKSLAESNENEISETLKVPE 594 Query: 598 KIACKIY 604 + A +I Sbjct: 595 EAAQEIL 601 >gi|307719872|ref|YP_003875404.1| UvrABC system protein C [Spirochaeta thermophila DSM 6192] gi|306533597|gb|ADN03131.1| UvrABC system protein C [Spirochaeta thermophila DSM 6192] Length = 612 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 173/620 (27%), Positives = 283/620 (45%), Gaps = 54/620 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E P PGVY M D G+V+YVGKA L+ R++SY+ + TH++ ++ +I + Sbjct: 15 QVEAAPSSPGVYLMRDEEGKVIYVGKAKVLRNRLRSYISGT-KDRKTTHLMRRVRSIEWI 73 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT TE +ALLLE +IK+ +P++NI L+D KS+P I +T P +++ R Y Sbjct: 74 VTDTEYDALLLENTLIKKYQPKYNIDLKDGKSYPVIRLT-AEDFPRVFRTRKIVHDGSRY 132 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ S ++ ++ + R F LR C R R PCL + I RC PC +IS E Y+ Sbjct: 133 FGPYGSAHLLDLYLDFIDRFFPLRKC-RGPLRKRAHPCLYYHIGRCPAPCVDKISREDYL 191 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 V + + LSG +L+ + M +A + YE+A +RD L A+ I + + + Sbjct: 192 ARVEDVARLLSGEVEDLQTSLKGRMEEAASRLAYETAARYRDALQAVEEILKNEQKVVDF 251 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 + D + + AC G+ G + + + + ++ +R + D Sbjct: 252 AREKRDYAAYVREEPYACFVVFKMRDGKLVGRDAY-VTHAFDEDDEDFSNFLVRYYDADI 310 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 PE + L E K I + ++GE I+ + NA + L Sbjct: 311 ALPEELHL-----FQGTQEEILAPYLAGKFGIRLIREGEGHPILNLVVQNAREELARHLK 365 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + + + +L + LP P RIE +D +H+ G MV K++YR F + Sbjct: 366 IKGNPEAVL-ALQEALELPVPPVRIEGFDIAHLQGTFPYASMVQFLGGVPHKSEYRLFRV 424 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 DD +R V RR+++L + L PD++++DGGKGQ++ Sbjct: 425 KTLQGL-VDDYEALREVTARRYTRLKNERKPL--------------PDLILIDGGKGQVN 469 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 A + VL L + I ++ +AK + E FF L+L R P L +Q +RDEA Sbjct: 470 AVREVLDALGLS-HIPLVGLAKQRE-----EIFFPHASAPLLLEERSPALRLLQYVRDEA 523 Query: 538 HRF----------AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 HRF K S L+ + GIG R LL +G++ I+R+ E Sbjct: 524 HRFATTAHARARAV---------KIDGSILETVEGIGKKRAVRLLTHYGSLDAIARAEAE 574 Query: 588 TLASIEGISKKIACKIYNHF 607 + + G + +A ++ Sbjct: 575 EIKEVAGCPEHVALRVKEAL 594 >gi|119370541|sp|Q9PLD1|UVRC_CHLMU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C Length = 598 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 187/615 (30%), Positives = 286/615 (46%), Gaps = 42/615 (6%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFT 61 + + PGVY M D G VLYVGKA NL+ R+ SY+ N + RI ++ + +I Sbjct: 8 LKNVSSSPGVYLMKDSQGVVLYVGKAKNLRNRLSSYLQKNGDSRERIPFLMKRTADIDTI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD----SSTI 117 V E EALLLE N+IK+ +PR+N+LL+DDK+F + I+ +H P + R S Sbjct: 68 VVSNETEALLLENNLIKKYQPRYNVLLKDDKTFFCLSISLQHPWPKIEAIRTRALSPSKK 127 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 + FGP+ S +A + + F LR+C+D F R RPC+L+++KRC PC G S Sbjct: 128 KQLLFGPYVSAEACYALLEVISHWFPLRTCSDREFSTRQRPCVLYEMKRCLAPCVGFCSQ 187 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 +Y E + +A FL G + + +A+ + +E A L + Sbjct: 188 TEYQETLEKAILFLKGEVDTTIANLEEAIKKASQEHKFEHAAALYRTLTLIRQTMAKQHV 247 Query: 238 ---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 +D LY LA I + G+ G F +++ ++ S+ L+ + Sbjct: 248 EKFQAYDIDVLGLYRKGPLAIISVLSVYSGKLLGARHFTFPENAQEDSSLFSSFILQYYA 307 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 + P+ I + + L + KI PK ++++ A NA Sbjct: 308 ENTRIPKQIFVPVSPDSPELP---YLLNAAEPPKIRCPKTEYGKELLALAHKNAAEQAKP 364 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 S + ++ + F P RIE YDN+H+ G VG +V + F QYR Sbjct: 365 L----NSITLPYEELQQLFKFSQYPNRIECYDNAHLQGEHNVGVYIVFEKGSFSPKQYRT 420 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F++ DD A VL RRF L PD++++DGG+ Sbjct: 421 FSI----TSHGDDLAAFEEVLTRRFRSLTTE-----------------LPDLIVIDGGRN 459 Query: 475 QLSAAQGVLKKLNVENRITIISIAK---GPKRSAGMEKFFVKK-GEALVLNMRDPILYFI 530 Q AQ +L+KLN+ I ++SIAK R EK F + + ++LN IL F Sbjct: 460 QFRRAQHILEKLNLTG-IAVVSIAKESGNHSRGLQQEKLFCEAFPQGILLNPTSEILQFF 518 Query: 531 QRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 Q LRDEAHRFAI +R + KA + +I GIG + LLQ F + K I +S E L Sbjct: 519 QLLRDEAHRFAINRYRNKHSKAILTT-KKIPGIGKTKTTHLLQKFKSWKRILSASEEELK 577 Query: 591 SIEGISKKIACKIYN 605 +++G++KK +I Sbjct: 578 TVQGLTKKDIQRIQE 592 >gi|309807094|ref|ZP_07701073.1| excinuclease ABC, C subunit [Lactobacillus iners LactinV 03V1-b] gi|308166524|gb|EFO68724.1| excinuclease ABC, C subunit [Lactobacillus iners LactinV 03V1-b] Length = 605 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 169/627 (26%), Positives = 292/627 (46%), Gaps = 46/627 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+CPG Y M D+ G+V+YVGK+ NL+ R++SY S R ++ IN+ Sbjct: 9 KLKLLPDCPGCYLMKDLNGKVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVRDINDFEII 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V ++ EA LLE +IK+ +P +N+ L++ +P+I IT+ + P + +G Y Sbjct: 68 VVSSDKEAFLLEITLIKKYQPYYNVQLKNGGGYPFIEITN-ERDPEVKLTSIIKKDKGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A + T+ +Q+ + LR C+ + RPCL + + +C G C ++SS+KY Sbjct: 127 FGPYPNVYAAQATLKFIQKMWPLRRCSGKL----GRPCLYYNMGQCLGSCFKKVSSDKYD 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + + K FL+G K ++ + M A+ ++E A +RD+L+ + + + Sbjct: 183 HQIKQIKCFLNGDITKAKTELIKKMQIASDNLEFERAGEYRDQLSYIEQTVEKQKIMLHD 242 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--D 296 + D F+ Y ++ IQ F + T F+ QFY + Sbjct: 243 KLQRDIFNFYVSQGWISIQILFIRQSKLMRRETKIFNLTDIDKAKDEFESFIVQFYNAKN 302 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352 + P IL+ + +SL I + P +G+K+ +++ A N+ Sbjct: 303 RLLPNEILVPKGVNVSSLAAILKVRVKT-------PSRGQKKALLDMAYENSKIKLDEKI 355 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + ++ LP+ RIE +D+SHI G V +VV + K++Y Sbjct: 356 RLLELNNLKTKGAQEEIFNALGLPYGS-RIESFDHSHIQGTDPVSALVVFIDGMPAKHEY 414 Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 RKF L D+ R V+ RR+S+++K P+++++D Sbjct: 415 RKFKLKGEIEHQNGADEVKNTREVVRRRYSRMLKEH--------------LVLPNLILMD 460 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF----FVKKGEALVLNMRDPI 526 GGK Q+ A VL+ + I + + K F ++ + L+ + Sbjct: 461 GGKIQVDACLDVLRN-ELNVNIPVAGMVKDNCHRTNHLIFGDPTVGEELRTIPLDSKSQA 519 Query: 527 LYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 Y I R++DE HRFAIT HR K + S LDEI GIGP + LL++FG++K I +S Sbjct: 520 FYLITRIQDEVHRFAITFHRNLHNKNSLASKLDEIKGIGPKSRNKLLKNFGSLKKIREAS 579 Query: 586 PETLASIEGISKKIACKIYNHFHKNTS 612 E L I G++ A + + + Sbjct: 580 IEDLKGI-GLTLTQAQSVKLVLENSQN 605 >gi|309807939|ref|ZP_07701867.1| excinuclease ABC, C subunit [Lactobacillus iners LactinV 01V1-a] gi|312875452|ref|ZP_07735455.1| excinuclease ABC, C subunit [Lactobacillus iners LEAF 2053A-b] gi|308168790|gb|EFO70880.1| excinuclease ABC, C subunit [Lactobacillus iners LactinV 01V1-a] gi|311088963|gb|EFQ47404.1| excinuclease ABC, C subunit [Lactobacillus iners LEAF 2053A-b] Length = 605 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 169/627 (26%), Positives = 294/627 (46%), Gaps = 46/627 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+CPG Y M D+ G+V+YVGK+ NL+ R++SY S R ++ IN+ Sbjct: 9 KLKLLPDCPGCYLMKDLNGKVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVRDINDFEII 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V ++ EA LLE +IK+ +P +N+ L++ +P+I IT+ + P + +G Y Sbjct: 68 VVSSDKEAFLLEITLIKKYQPYYNVQLKNGGGYPFIEITN-ERDPEVKLTSIIKKDKGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A + T+ +Q+ + LR C+ + RPCL + + +C G C E+SS+KY Sbjct: 127 FGPYPNVYAAQATLKFIQKMWPLRRCSGKL----GRPCLYYNMGQCLGSCFKEVSSDKYD 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + + K FL+G K ++ + M A+ ++E A +RD+L+ + + + Sbjct: 183 HQIKQIKCFLNGDITKAKTELIKKMQIASDNLEFERAGEYRDQLSYIEQTVEKQKIMLHD 242 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--D 296 + D F+ Y ++ IQ F + T F+ QFY + Sbjct: 243 KLQRDIFNFYVSQGWISIQILFIRQSKLMRRETKIFNLTDIDKAKDEFESFIVQFYNAKN 302 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352 + P IL+ + +SL + + + +P +G+K+ +++ A N+ Sbjct: 303 RLLPNEILVPKGVNVSSLAAVLKVR-------VKIPSRGQKKALLDMAYENSKIKLDEKI 355 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + ++ LP+ RIE +D+SHI G V +VV + K++Y Sbjct: 356 RLLELNNLKTKGAQEEIFNALGLPYGS-RIESFDHSHIQGTDPVSALVVFIDGMPAKHEY 414 Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 RKF L D+ R V+ RR+S+++K P+++++D Sbjct: 415 RKFKLKGEIEHQNGADEVKNTREVVRRRYSRMLKEH--------------LVLPNLILMD 460 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF----FVKKGEALVLNMRDPI 526 GGK Q+ A VL+ + I + + K F ++ + L+ + Sbjct: 461 GGKIQVDACLDVLRN-ELNVNIPVAGMVKDNCHRTNHLIFGDPTVGEELRTIPLDSKSQA 519 Query: 527 LYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 Y I R++DE HRFAIT HR K + S LDEI GIGP + LL++FG++K I +S Sbjct: 520 FYLITRIQDEVHRFAITFHRNLHNKNSLASKLDEIKGIGPKSRNKLLKNFGSLKKIREAS 579 Query: 586 PETLASIEGISKKIACKIYNHFHKNTS 612 E L I G++ A + + + Sbjct: 580 IEDLKGI-GLTLTQAQSVKLVLENSQN 605 >gi|292657114|ref|YP_003537011.1| excinuclease ABC subunit C [Haloferax volcanii DS2] gi|291372136|gb|ADE04363.1| excinuclease ABC subunit C [Haloferax volcanii DS2] Length = 579 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 184/613 (30%), Positives = 296/613 (48%), Gaps = 51/613 (8%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PGVYQ + VLYVGKA +++ R++SY ++ + RI+ M+ + +I F V Sbjct: 10 ASALPSDPGVYQFV-AGDAVLYVGKAVDIRARVRSY--ADPRSERISRMVDRAEHIDFAV 66 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE +ALLLEAN+IKR +PR+N+ L+DDKS+P + +T H +P + RD + F Sbjct: 67 TDTETQALLLEANLIKRHQPRYNVRLKDDKSYPLVQLT-AHAVPRIEVTRDPE-DSATVF 124 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ VE + +++ T+ LR C+D + +R+RPCL +++ C+ PCTGEI+ Y E Sbjct: 125 GPYTDKGRVETVVKAIRETYGLRGCSDHKYSNRSRPCLDYEMGLCTAPCTGEIAERDYRE 184 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN------HND 236 V A +F G L + + R M A ++E A RDRL A+ + Sbjct: 185 DVESAVRFFEGETGVLADPLRREMEAAAQDAEFERAANLRDRLEAVESFHGAGEDAVSSQ 244 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST-NAQILSYFLRQFYT 295 S +D + + A + GQ L A +LS FL QFY Sbjct: 245 SDERAIDVLGVSLRGDSATVARLHAERGQLVDRTRHHLDAPEGEDRTAAVLSAFLAQFYA 304 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ P+ ++LSE ++ ++ + V + +P G + K++E AL NA R Sbjct: 305 ERDLPDAVVLSEHPDDEDVVAWLEAEG----VGVRIPGAGREAKLVELALKNARR----- 355 Query: 356 LSTEISHQMILKDFTKKFALPHIPK-RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 L ++ L RIE +D SH G + VG V E YR+ Sbjct: 356 ---RAGRDDGLATLARELDLDVRRVARIEGFDVSHAQGKAVVGSDVCFVEGSAETADYRR 412 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 L DD A MR ++ R ++ ++ ++ PD++++DGGKG Sbjct: 413 RRLPER----NDDYANMRDLVRWRATRALEGRDDRPD------------PDLLLIDGGKG 456 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 QL+AA L + + + + IAK + V P L+ +QR+R Sbjct: 457 QLNAALDALDETGWD--VPAVGIAKDRE-------LVVTPDRTFDWPDDAPHLHVLQRVR 507 Query: 535 DEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 DEAHRFA+ H+ R + + LD++ G+G +R LL FG+V+ + +S E L + G Sbjct: 508 DEAHRFAVQYHQTLRDE-VKTVLDDVPGVGEKTRRALLTRFGSVEGVREASVEDLTDVPG 566 Query: 595 ISKKIACKIYNHF 607 + +K A ++ Sbjct: 567 VGEKTADELKRRL 579 >gi|315653489|ref|ZP_07906410.1| excinuclease ABC subunit C [Lactobacillus iners ATCC 55195] gi|329921328|ref|ZP_08277766.1| excinuclease ABC, C subunit [Lactobacillus iners SPIN 1401G] gi|315489180|gb|EFU78821.1| excinuclease ABC subunit C [Lactobacillus iners ATCC 55195] gi|328934620|gb|EGG31124.1| excinuclease ABC, C subunit [Lactobacillus iners SPIN 1401G] Length = 605 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 169/627 (26%), Positives = 294/627 (46%), Gaps = 46/627 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+CPG Y M D+ G+V+YVGK+ NL+ R++SY S R ++ IN+ Sbjct: 9 KLKLLPDCPGCYLMKDLNGKVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVRDINDFEII 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V ++ EA LLE +IK+ +P +N+ L++ +P+I IT+ + P + +G Y Sbjct: 68 VVSSDKEAFLLEITLIKKYQPYYNVQLKNGGGYPFIEITN-ERDPEVKLTSIIKKDKGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A + T+ +Q+ + LR C+ + RPCL + + +C G C E+SS+KY Sbjct: 127 FGPYPNVYAAQATLKFIQKMWPLRRCSGKL----GRPCLYYNMGQCLGSCFKEVSSDKYD 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + + K FL+G K ++ + M A+ ++E A +RD+L+ + + + Sbjct: 183 HQIKQIKCFLNGDITKAKTELIKKMQIASDNLEFERAGEYRDQLSYIEQTVEKQKIMLHD 242 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--D 296 + D F+ Y ++ IQ F + T F+ QFY + Sbjct: 243 KLQRDIFNFYVSQGWISIQILFIRQSKLMRRETKIFNLTDIDKAKDEFESFIVQFYNAKN 302 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352 + P IL+ + +SL + + + +P +G+K+ +++ A N+ Sbjct: 303 RLLPNEILVPKGVNASSLAAVLKVR-------VKIPSRGQKKALLDMAYENSKIKLDEKI 355 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + ++ LP+ RIE +D+SHI G V +VV + K++Y Sbjct: 356 RLLELNNLKTKGAQEEIFNALGLPYGS-RIESFDHSHIQGTDPVSALVVFIDGMPAKHEY 414 Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 RKF L D+ R V+ RR+S+++K P+++++D Sbjct: 415 RKFKLKGEIEHQNGADEVKNTREVVRRRYSRMLKEH--------------LVLPNLILMD 460 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF----FVKKGEALVLNMRDPI 526 GGK Q+ A VL+ + I + + K F ++ + L+ + Sbjct: 461 GGKIQVDACLDVLRN-ELNVNIPVAGMVKDNCHRTNHLIFGDPTVGEELRTIPLDSKSQA 519 Query: 527 LYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 Y I R++DE HRFAIT HR K + S LDEI GIGP + LL++FG++K I +S Sbjct: 520 FYLITRIQDEVHRFAITFHRNLHNKNSLASKLDEIKGIGPKSRNKLLKNFGSLKKIREAS 579 Query: 586 PETLASIEGISKKIACKIYNHFHKNTS 612 E L I G++ A + + + Sbjct: 580 IEDLKGI-GLTLTQAQSVKLVLENSQN 605 >gi|309804152|ref|ZP_07698230.1| excinuclease ABC, C subunit [Lactobacillus iners LactinV 11V1-d] gi|308163735|gb|EFO66004.1| excinuclease ABC, C subunit [Lactobacillus iners LactinV 11V1-d] Length = 605 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 170/627 (27%), Positives = 294/627 (46%), Gaps = 46/627 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+CPG Y M D+ G+V+YVGK+ NL+ R++SY S R ++ IN+ Sbjct: 9 KLKLLPDCPGCYLMKDLNGKVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVRDINDFEII 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V ++ EA LLE +IK+ +P +N+ L++ +P+I IT+ K P + +G Y Sbjct: 68 VVSSDKEAFLLEITLIKKYQPYYNVQLKNGGGYPFIEITN-EKDPEVKLTSIIKKDKGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A + T+ +Q+ + LR C+ + RPCL + + +C G C E+SS+KY Sbjct: 127 FGPYPNVYAAQATLKFIQKMWPLRRCSGKL----GRPCLYYNMGQCLGSCFKEVSSDKYD 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + + K FL+G K ++ + M A+ ++E A +RD+L+ + + + Sbjct: 183 HQIKQIKCFLNGDITKAKTELIKKMQIASDNLEFERAGEYRDQLSYIEQTVEKQKIMLHD 242 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--D 296 + D F+ Y ++ IQ F + T F+ QFY + Sbjct: 243 KLQRDIFNFYVSQGWISIQILFIRQSKLMRRETKIFNLTDIDKAKDEFESFIVQFYNAKN 302 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352 + P IL+ + +SL + + + +P +G+K+ +++ A N+ Sbjct: 303 RLLPNEILVPKGVNASSLAAVLKVR-------VKIPSRGQKKALLDMAYENSKIKLDEKI 355 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + ++ LP+ RIE +D+SHI G V +VV + K++Y Sbjct: 356 RLLELNNLKTKGAQEEIFNALGLPYGS-RIESFDHSHIQGTDPVSALVVFIDGMPAKHEY 414 Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 RKF L D+ R V+ RR+S+++K P+++++D Sbjct: 415 RKFKLKGEIEHQNGADEVKNTREVVRRRYSRMLKEH--------------LVLPNLILMD 460 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF----FVKKGEALVLNMRDPI 526 GGK Q+ A VL+ + I + + K F ++ + L+ + Sbjct: 461 GGKIQVDACLDVLRN-ELNVNIPVAGMVKDNCHRTNHLIFGDPTVGEELRTIPLDSKSQA 519 Query: 527 LYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 Y I R++DE HRFAIT HR K + S LDEI GIGP + LL++FG++K I +S Sbjct: 520 FYLITRIQDEVHRFAITFHRNLHNKNSLASKLDEIKGIGPKSRNKLLKNFGSLKKIREAS 579 Query: 586 PETLASIEGISKKIACKIYNHFHKNTS 612 E L I G++ A + + + Sbjct: 580 IEDLKGI-GLTLTQAQSVKLVLENSQN 605 >gi|325911978|ref|ZP_08174380.1| excinuclease ABC, C subunit [Lactobacillus iners UPII 143-D] gi|325476163|gb|EGC79327.1| excinuclease ABC, C subunit [Lactobacillus iners UPII 143-D] Length = 605 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 169/627 (26%), Positives = 294/627 (46%), Gaps = 46/627 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+CPG Y M D+ G+V+YVGK+ NL+ R++SY S R ++ IN+ Sbjct: 9 KLKLLPDCPGCYLMKDLNGKVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVRDINDFEII 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V ++ EA LLE +IK+ +P +N+ L++ +P+I IT+ + P + +G Y Sbjct: 68 VVSSDKEAFLLEITLIKKYQPYYNVQLKNGGGYPFIEITN-ERDPEVKLTSIIKKDKGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A + T+ +Q+ + LR C+ + RPCL + + +C G C E+SS++Y Sbjct: 127 FGPYPNVYAAQATLKFIQKMWPLRRCSGKL----GRPCLYYSMGQCLGSCFKEVSSDRYD 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + + K FL+G K ++ + M A+ ++E A +RD+L+ + + N Sbjct: 183 HQIKQIKCFLNGDITKAKTELIKKMQIASDNLEFERASEYRDQLSYIEQTVEKQKIMLND 242 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--D 296 + D F+ Y ++ IQ F + T F+ QFY + Sbjct: 243 KLQRDIFNFYVSQGWISIQILFIRQSKLMRRETKIFNLTDIDKAKDEFESFIVQFYNAKN 302 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352 + P IL+ + +SL + + + +P +G+K+ +++ A N+ Sbjct: 303 RLFPNEILVPKGVNASSLAAVLKVR-------VKIPSRGQKKALLDMAYENSKIKLDEKI 355 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + ++ LP+ RIE +D+SHI G V +VV + K++Y Sbjct: 356 RLLELNNLKTKGAQEEIFNALGLPYGS-RIESFDHSHIQGTDPVSALVVFIDGMPAKHEY 414 Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 RKF L D+ R V+ RR+S+++K P+++++D Sbjct: 415 RKFKLKGEIEHQNGADEVKNTREVVRRRYSRMLKEH--------------LVLPNLILMD 460 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF----FVKKGEALVLNMRDPI 526 GGK Q+ A VL+ + I + + K F ++ + L+ + Sbjct: 461 GGKIQVDACLDVLRN-ELNVNIPVAGMVKDNCHRTNHLIFGDPTVGEELRTIPLDSKSQA 519 Query: 527 LYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 Y I R++DE HRFAIT HR K + S LDEI GIGP + LL++FG++K I +S Sbjct: 520 FYLITRIQDEVHRFAITFHRNLHNKNSLASKLDEIKGIGPKSRNKLLKNFGSLKKIREAS 579 Query: 586 PETLASIEGISKKIACKIYNHFHKNTS 612 E L I G++ A + + + Sbjct: 580 IEDLKGI-GLTLTQAQSVKLVLENSQN 605 >gi|295426311|ref|ZP_06818971.1| excision endonuclease subunit UvrC [Lactobacillus amylolyticus DSM 11664] gi|295064050|gb|EFG54998.1| excision endonuclease subunit UvrC [Lactobacillus amylolyticus DSM 11664] Length = 600 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 170/622 (27%), Positives = 282/622 (45%), Gaps = 46/622 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P PG Y M DI G V+YVGK+ NL+ R++SY S R ++ +I + Sbjct: 9 KLKFLPAKPGCYLMKDINGTVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVREIRDYDII 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T+ EA LLE +IK+ +P +N+ L+ +PYI IT+ + P +G Y Sbjct: 68 TVSTDKEAFLLEITLIKKYQPYYNVQLKQGTGYPYIEITN-ERDPQTKLTSVVHKDKGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A + T+ +Q+ F LR C RPCL + + +C G C ++ ++Y Sbjct: 127 FGPYPNVYAAQATLKFIQKVFPLRRCNGYQ----GRPCLYYHMGQCLGACFKKVPEKEYA 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 E + + K FL+G +K+ + + M A+ + ++E A RD+L + I N Sbjct: 183 EQIKKIKSFLNGDIGWVKQDLTQKMETASQQLEFERAAEIRDQLKYIEETVEKQKIISND 242 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 + D F+ Y +K+ +Q F + T F+ QFY + Sbjct: 243 NTQRDIFNFYVDKSWLSVQIFFLRQAKLLRRETRMFPLTDAGEPEDEFVSFIVQFYNQRN 302 Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P+ +L+ + + L E+ V + P++G+KR ++E A NA K Sbjct: 303 RVLPKEVLVPKGIDNEDLSEVLH-------VPVRTPQRGQKRALLEMAKDNAKLKLDDKF 355 Query: 357 S----TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + K+ LP+ IE +D+SHI G V +VV + K Y Sbjct: 356 RLLELGNRKTKGAQKEIFAALGLPYG-HIIESFDHSHIQGADPVSALVVFKDGETDKTSY 414 Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 RK+ L D+ R V+ RR+ +L++ + + PD++++D Sbjct: 415 RKYKLKGEVEHQNGGDELRNTREVVRRRYGRLLREHKKM--------------PDLILMD 460 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEALVL---NMRDPI 526 GG+ Q+ A + VL+ + I + + K K F G+ L + + Sbjct: 461 GGQIQVEACEDVLRN-ELNLNIPVAGMVKDDKHRTNHLLFGDPINGQPFKLIPMDPKSQG 519 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 Y + R++DE HRFAIT HR+ K A S LD I GIGP + LL+ FG++K I +S Sbjct: 520 FYLMTRIQDEVHRFAITFHRRTHAKNALSSRLDSIKGIGPKSRNKLLRQFGSMKKIKEAS 579 Query: 586 PETLASIEGISKKIACKIYNHF 607 + L + G++ A + Sbjct: 580 IDELRNA-GLTLTQAQSVKLSL 600 >gi|330837535|ref|YP_004412176.1| UvrABC system protein C [Spirochaeta coccoides DSM 17374] gi|329749438|gb|AEC02794.1| UvrABC system protein C [Spirochaeta coccoides DSM 17374] Length = 611 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 167/611 (27%), Positives = 303/611 (49%), Gaps = 31/611 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P PGVY M D +G V+YVGKA +L+KR+ SY + + ++ +I++I Sbjct: 27 QARALPHAPGVYVMKDSSGHVIYVGKAKDLRKRVTSYF-LSGRNIKTEALVRKISDIDHI 85 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 + T+ EAL+LE N+IK+ P +NI L+D KS+P I IT P ++K R SY Sbjct: 86 IVGTDYEALILENNLIKKYAPHYNISLKDGKSYPLIRIT-AEPFPKVFKTRRVIKDGSSY 144 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GP+ ++ + + + F LR C R R +PCL I C+GPC G ++ E+Y Sbjct: 145 YGPYPDAHKLDTCLELISKIFPLRRCGSP-LRMREKPCLYHHIGMCAGPCIGAVTEEQYK 203 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRD---RLAALSHIQNHNDSI 238 +V + +KFL G+ +L+EKI M A+ K D+E+A RD L +++ + D Sbjct: 204 TYVDQVRKFLEDGSESLEEKIRAEMASASKKLDFETAAAKRDVLLALESVNRTRQVEDFS 263 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D ++ L + G+ G + +T + T +L++ ++ + + Sbjct: 264 DESRDYAAIEMRAPLCTVSIMQIREGKLIGRALYRAETLGDETET-LLNFLMQYYADGEQ 322 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P+ + +S E + L+ F + + +++T+P +G+ +I++ A NA R ++L + Sbjct: 323 LPKTLYVSHEIDT-DLIRQYFSQTHDRHIEVTLPMEGKHFRIVKMAAENAARDVEKRLRS 381 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + L++ ++ L P IE +D + + G V ++ + YR+FN+ Sbjct: 382 RDN-TGALEELAQELGLEAPPMLIEGFDIAQLAGKYTVASLISFRDGNPDPKNYRRFNIK 440 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 D + DD +R + RR+++++ P ++++DGGKGQ+ A Sbjct: 441 SLDGR-IDDFEAVREAIARRYTRVLNEN--------------LEKPGLIMIDGGKGQVGA 485 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ +L L + + I ++ +AK + E F +L+L P L + +RDE H Sbjct: 486 AREILDSLGLSD-IPLVGLAKDLE-----EIVFDDDRPSLLLPEDSPALRVLIAVRDECH 539 Query: 539 RFA-ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFA R R + A + L+ + G+G R ++++FG++ + +S E +AS I Sbjct: 540 RFATNANQRLRSQDATFKLLESVEGVGSARSARIMRTFGSLDALLSASEEDIASKAKIPL 599 Query: 598 KIACKIYNHFH 608 +A KI + Sbjct: 600 IVARKILRKLN 610 >gi|19704425|ref|NP_603987.1| excinuclease ABC subunit C [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296328221|ref|ZP_06870752.1| excision endonuclease subunit UvrC [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|81483742|sp|Q8REL0|UVRC_FUSNN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|19714685|gb|AAL95286.1| Excinuclease ABC subunit C [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296154733|gb|EFG95519.1| excision endonuclease subunit UvrC [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 589 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 189/613 (30%), Positives = 308/613 (50%), Gaps = 39/613 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE GVY M +V+YVGKA NL+ R+ SY + + + + ++ I +I F +T Sbjct: 7 DIPESSGVYLMK-KNNKVIYVGKAKNLKNRVSSYFNRVHESEKTNELVKNIEDIEFFLTN 65 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST---IQGSY 121 TE++ALLLE N+IK+ P++NILL+D+K++P+I I+ K ++ R + G Y Sbjct: 66 TEIDALLLENNLIKKYSPKYNILLKDEKTYPFIKIS-KEDFSSIKIVRTTKALDIKSGEY 124 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + N L + F +R C + + RPCL + +K C+GPC + E+Y Sbjct: 125 FGPYP--YGAWRLKNILMKLFKIRDCNRDMKKTSPRPCLKYYMKSCTGPCVYKDIKEEYN 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + V K+ L G L ++ MN+A+ D+E +II+R+++ L I + Y R Sbjct: 183 KDVENLKQVLKGNTSKLINELTALMNKASQDMDFEKSIIYREQIKELKSIASSQIIQYER 242 Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F + A I G+ G + + ++ T+ I +Y+ Sbjct: 243 ELDEDIFVFKTILDKAFICVLNMRDGKILGKSSTSIDLKNKITDN-IYEAIFMSYYSKHI 301 Query: 299 CPENILLSEEAEET--SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P++++L E E +++ + K + ++++++ A N R Sbjct: 302 LPKSLVLDAEYENELSVVVKALTIEDSKKKEFHFPKIKSRRKELLDMAYKNLERDIESYF 361 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 S + + + +KD L P++IE +D S+I G AV M V E + +YRKF Sbjct: 362 SKKDTIEKGIKDLHDILGLKRFPRKIECFDISNIQGKDAVASMSVSIEGRAARKEYRKFK 421 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + D DD +MMR V+ERR+S+L E +PDV+++DGG GQ+ Sbjct: 422 IRCKDTP--DDFSMMREVIERRYSKLPDIE----------------FPDVILIDGGLGQI 463 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 ++A VLK+L + ++S+A E + + VL+ L QR+RDE Sbjct: 464 NSAGEVLKRLGKIHLSELLSLA-----ERNEEIYKYGESIPYVLSKDMEALKIFQRVRDE 518 Query: 537 AHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 AHRF IT HRK R K+ S LD+I+GIG +R+R LL FG++ I ++S E L I I Sbjct: 519 AHRFGITYHRKIRSKRIISSELDKIDGIGEVRRRKLLTKFGSISAIKKASIEELKEI--I 576 Query: 596 SKKIACKIYNHFH 608 +K+A +I N Sbjct: 577 PEKVALEIKNKIR 589 >gi|261367296|ref|ZP_05980179.1| excinuclease ABC subunit C [Subdoligranulum variabile DSM 15176] gi|282570899|gb|EFB76434.1| excinuclease ABC subunit C [Subdoligranulum variabile DSM 15176] Length = 616 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 161/612 (26%), Positives = 275/612 (44%), Gaps = 18/612 (2%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVTC 64 +P PGVY + D + ++Y+GKA L+ R+ Y H ++T MI+ V Sbjct: 13 LPLLPGVYIIRDKSDTIIYIGKAKRLKTRVSQYFREGVPHDAKVTQMIAHAFTFDVIVCQ 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EAL+LEA+ IK P++NILL+DDK + Y+ +T P + Y GP Sbjct: 73 SEFEALVLEASQIKAHTPKYNILLKDDKGYSYVKVTKG-PWPRISAALQKDDDGADYIGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSEKYME 182 F S AV + + Q F L C R + RPCL I +C C+G+IS E Y E Sbjct: 132 FTSSFAVREMVEMAQDCFLLPRCNREFPRDFGKGRPCLNAHIGKCMAVCSGKISCEAYNE 191 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240 V A + + G ++ +++ M A+ + D+E+A + RD++ A+ + + + Sbjct: 192 AVQGALRMIRYGKKDIVKQLREKMEAASERLDFETAALLRDQIQAIERVAAGQKVVMDGD 251 Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 MD +L C + G+ F+ D+ + + + + Sbjct: 252 TEMDVIALAGTTRAVCAAVLRYRDGR-LTDKREFVFHDTTDIEQVREEFLPQYYLDGETI 310 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P+ I + + + L + + G KV++ VP++G+ K++ A NA ++ Sbjct: 311 PKIIAVDKLPADAEALNEALNQTRGSKVELYVPQRGDVAKLVTMAYTNAVERLGRESGRY 370 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + +L++ + L P+ IE YD S+ S+V MVV + ++ YR+F + Sbjct: 371 TREEKLLEEAAQMLGLKAPPRVIESYDISNWGDGSSVCGMVVFKDGKPHRSGYRRFKMKT 430 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 V DD A + L RR ++ P + F + PD++++DGG+GQ+ A Sbjct: 431 --VAGTDDYASLAETLSRRAAEY--EAARRGEKPDGPQNQFATLPDLLLIDGGRGQVGAV 486 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 + LK +E + + K G + +N I F+ ++DE HR Sbjct: 487 KQALKGTALE-HVPTFGMVKDDHHRTRA--IVDDAGGEIAINRNRNIFTFVTNIQDETHR 543 Query: 540 FAITTHRKR--RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 +A RKR +K++ + L + G+G LL F TV + +S L ++GIS Sbjct: 544 YANDY-RKRAMKKRSYAATLTALPGVGEKTSAALLAHFKTVAAVKAASISDLEEVKGISH 602 Query: 598 KIACKIYNHFHK 609 A K+YN Sbjct: 603 AKAEKLYNALRN 614 >gi|237736971|ref|ZP_04567452.1| excinuclease ABC subunit C [Fusobacterium mortiferum ATCC 9817] gi|229420833|gb|EEO35880.1| excinuclease ABC subunit C [Fusobacterium mortiferum ATCC 9817] Length = 598 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 176/621 (28%), Positives = 291/621 (46%), Gaps = 39/621 (6%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + +PE PGVY M +V+YVGKA NL+ R+ SY + + + + ++ I +I F Sbjct: 7 IKKLDIPENPGVYLMK-KNSKVIYVGKAKNLKNRVSSYFNREHESEKTRELVKNIEDIEF 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS---TI 117 + +E++AL+LE N+IK+ P++NILL+D+K++PYI I+ K P + R + T Sbjct: 66 IICNSELDALVLENNLIKKYTPKYNILLKDEKTYPYIRIS-KENFPNIKIIRTTKALDTK 124 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 G YFGP+ +L + F +R C + + RPCL + +K C GPCT + Sbjct: 125 SGLYFGPYP--FGAWNLKKALVKIFKIRDCERDMNKIYPRPCLKYFMKMCPGPCTYKDIF 182 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 +Y V K L G + + ++M +A +E AI R+++ + + + Sbjct: 183 LEYNGQVERVKNLLKGKEKEVIASLKKDMEKAAEDMRFEEAINLREQIKEVESAVVNQVT 242 Query: 238 IYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 Y D F + I G+ G + + + + + FY Sbjct: 243 EYGKELDEDIFLMQKEGEKVFICVLNVRDGKILGKISTHIDLK-DKIEGNLEENIVTAFY 301 Query: 295 TDKPCPENILLS--EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 + P P++I+ E E + EI ++ + +++++E +N R Sbjct: 302 SKHPIPKSIVFQEKMEDELNLVREILELQRGKKVEFHFPKIKSRRKELLEMGELNISRDI 361 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + L + +L P++IE +D S+I G AV M V E K Y Sbjct: 362 ESYFKKKSVVEEGLYKIYTELSLKKYPRKIECFDISNIQGKDAVASMSVSVEGRASKKDY 421 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472 RKF + D DD AMMR V+ RR+S+L ++E +PD+V++DGG Sbjct: 422 RKFKITCKDTP--DDFAMMREVITRRYSKLPEHE----------------FPDIVLIDGG 463 Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532 GQ++AA V K++ + ++S+AK + E + + L QR Sbjct: 464 LGQINAAGEVFKEIGKDGIAELLSLAKRDE-----EIYKYGEAIPYSFPKEWEALKIFQR 518 Query: 533 LRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDEAHRF IT HRK R K S LD++ G+G R+ +LL+ FG+VK I ++LA Sbjct: 519 VRDEAHRFGITYHRKLRSKRVISSELDKVEGVGAKRREVLLKEFGSVKKILEEDVDSLAR 578 Query: 592 IEGISKKIACKIYNHFHKNTS 612 + +K+A I + N Sbjct: 579 F--VPRKVAENILDTLKNNKD 597 >gi|300709537|ref|YP_003735351.1| excinuclease ABC subunit C [Halalkalicoccus jeotgali B3] gi|299123220|gb|ADJ13559.1| excinuclease ABC subunit C [Halalkalicoccus jeotgali B3] Length = 577 Score = 422 bits (1084), Expect = e-115, Method: Composition-based stats. Identities = 186/610 (30%), Positives = 299/610 (49%), Gaps = 51/610 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVYQ L G LYVGKA +L+ R++SY ++ + RI M+ +I F VT Sbjct: 12 TLPREPGVYQFL-ADGTTLYVGKAVDLRGRVRSY--ADPRSARIRRMVQGAESIDFAVTD 68 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLEAN+IKR +PR+N+ L+DDKS+P + +T H+ P + RD + FGP Sbjct: 69 TETQALLLEANLIKRHQPRYNVRLKDDKSYPLVQLT-DHEFPRIEITRDP-DAAATAFGP 126 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F + VE + +L+ + +R C+D F R RPCL I C+ PCTGEI E Y+E V Sbjct: 127 FTNKGIVEVVVKALREVYGVRGCSDHKFSGRARPCLDHDIGLCTAPCTGEIGREAYVEDV 186 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN------HNDSI 238 ++F +G L + + R M +A ++ +E A RDRL A+ H+ + Sbjct: 187 ESVERFFAGETGALADPLRRRMERAAQEQSFERAASLRDRLEAVEGFHEGRGEAVHDAAD 246 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLK-TDSESTNAQILSYFLRQFYTDK 297 +D + + A + GQ L D+ +A +L+ F+ Q+Y ++ Sbjct: 247 ARHVDVLGVSTEGDRAIVARLQSEGGQLVDRERHHLSIPDAGDGHAGVLAAFIAQYYAER 306 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P+++L+ E+ + L + + + VP G + +++ A+ NA R Sbjct: 307 ELPDSLLVPEDPADAELRGWLESEG----IDLRVPGAGREATLVDLAIKNARRGDYSDDP 362 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + ++P RIE +D SH G +AVG V+ + YR+ L Sbjct: 363 VSA--------LAEALSIPRPE-RIEGFDVSHAHGKAAVGSNVLFVGGEAETSGYRRKKL 413 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 DD A MR ++ R + ++ ++ PD++++DGG GQL Sbjct: 414 EER----NDDYANMRALVRWRALRAVEGRDDRPD------------PDLLLIDGGDGQLD 457 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 AA+ L + + + I++AK E+ + L + L+ +QR+RDE+ Sbjct: 458 AAREALSETGWD--VPAIALAK-------AEELVITPDGPLDWSSDATHLHLLQRVRDES 508 Query: 538 HRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 HRFA+ H+ R + LD++ GIGP + LL+ FG+V+ I +S E L S+EGI + Sbjct: 509 HRFALQYHQTLRD-DVSTVLDDVPGIGPKTRTSLLRRFGSVEGIRTASVEDLRSVEGIGE 567 Query: 598 KIACKIYNHF 607 K A I Sbjct: 568 KTARTITERL 577 >gi|312873934|ref|ZP_07733970.1| excinuclease ABC, C subunit [Lactobacillus iners LEAF 2052A-d] gi|311090483|gb|EFQ48891.1| excinuclease ABC, C subunit [Lactobacillus iners LEAF 2052A-d] Length = 605 Score = 421 bits (1083), Expect = e-115, Method: Composition-based stats. Identities = 169/626 (26%), Positives = 293/626 (46%), Gaps = 44/626 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+CPG Y M D+ G+V+YVGK+ NL+ R++SY S R ++ IN+ Sbjct: 9 KLKLLPDCPGCYLMKDLNGKVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVRDINDFEII 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V ++ EA LLE +IK+ +P +N+ L++ +P+I IT+ + P + +G Y Sbjct: 68 VVSSDKEAFLLEITLIKKYQPYYNVQLKNGGGYPFIEITN-ERDPEVKLTSIIKKDKGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A + T+ +Q+ + LR C+ + RPCL + + +C G C E+SS+KY Sbjct: 127 FGPYPNVYAAQATLKFIQKMWPLRRCSGKL----GRPCLYYNMGQCLGSCFKEVSSDKYD 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + + K FL+G K ++ + M A+ ++E A +RD+L+ + + + Sbjct: 183 HQIKQIKCFLNGDITKAKTELIKKMQIASDNLEFERAGEYRDQLSYIEQTVEKQKIMLHD 242 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--D 296 + D F+ Y ++ IQ F + T F+ QFY + Sbjct: 243 KLQRDIFNFYVSQGWISIQILFIRQSKLMRRETKIFNLTDIDKATDEFESFIVQFYNAKN 302 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 + P IL+ + +SL + + P +G+K+ +++ A N+ +K+ Sbjct: 303 RLLPNEILVPKGVNASSLAAVLKVRVKT-------PSRGQKKALLDMAYENSKIKLDEKI 355 Query: 357 STEISHQMILKDFTKKFALP---HIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + K ++ RIE +D+SHI G V +VV + K++YR Sbjct: 356 RLLELNNLKTKGAQEEIFNALGVPYGSRIESFDHSHIQGTDPVSALVVFIDGMPAKHEYR 415 Query: 414 KFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 KF L D+ R V+ RR+S+++K P+++++DG Sbjct: 416 KFKLKGEIEHQNGADEVKNTREVVRRRYSRMLKEH--------------LVLPNLILMDG 461 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF----FVKKGEALVLNMRDPIL 527 GK Q+ A VL+ + I + + K F ++ + L+ + Sbjct: 462 GKIQVDACLDVLRN-ELNVNIPVAGMVKDNCHRTNHLIFGDPTVGEELRTIPLDSKSQAF 520 Query: 528 YFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586 Y I R++DE HRFAIT HR K + S LDEI GIGP + LL++FG++K I +S Sbjct: 521 YLITRIQDEVHRFAITFHRNLHNKNSLASKLDEIKGIGPRSRNKLLKNFGSLKKIREASI 580 Query: 587 ETLASIEGISKKIACKIYNHFHKNTS 612 E L I G++ A + + + Sbjct: 581 EDLKGI-GLTLTQAQSVKLVLENSQN 605 >gi|309809263|ref|ZP_07703132.1| excinuclease ABC, C subunit [Lactobacillus iners SPIN 2503V10-D] gi|308170376|gb|EFO72400.1| excinuclease ABC, C subunit [Lactobacillus iners SPIN 2503V10-D] Length = 605 Score = 421 bits (1083), Expect = e-115, Method: Composition-based stats. Identities = 170/627 (27%), Positives = 292/627 (46%), Gaps = 46/627 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+CPG Y M D+ G+V+YVGK+ NL+ R++SY S R ++ IN+ Sbjct: 9 KLKLLPDCPGCYLMKDLNGKVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVRDINDFEII 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V ++ EA LLE +IK+ +P +N+ L++ +P+I IT+ K P + +G Y Sbjct: 68 VVSSDKEAFLLEITLIKKYQPYYNVQLKNGGGYPFIEITN-EKDPEVKLTSIIKKDKGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A + T+ +Q+ + LR C+ + RPCL + + +C G C E+SS+KY Sbjct: 127 FGPYPNVYAAQATLKFIQKMWPLRRCSGKL----GRPCLYYNMGQCLGSCFKEVSSDKYD 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 + + K FL+G K ++ + M A+ ++E A +RD+L+ + + + Sbjct: 183 HQIKQIKCFLNGDITKAKTELIKKMQIASDNLEFERAGEYRDQLSYIEQTVEKQKIMLHD 242 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--D 296 + D F+ Y ++ IQ F + T F+ QFY + Sbjct: 243 KLQRDIFNFYVSQGWISIQILFIRQSKLMRRETKIFNLTDIDKAKDEFESFIVQFYNAKN 302 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352 + P IL+ + +SL + + P +G+K+ +++ A N+ Sbjct: 303 RLLPNEILVPKGVNASSLAAVLKVRVKT-------PSRGQKKALLDMAYENSKIKLDEKI 355 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + ++ LP+ RIE +D+SHI G V +VV + K++Y Sbjct: 356 RLLELNNLKTKGAQEEIFNALGLPYGS-RIESFDHSHIQGTDPVSALVVFIDGMPAKHEY 414 Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 RKF L D+ R V+ RR+S+++K P+++++D Sbjct: 415 RKFKLKGEIEHQNGADEVKNTREVVRRRYSRMLKEH--------------LVLPNLILMD 460 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF----FVKKGEALVLNMRDPI 526 GGK Q+ A VL+ + I + + K F ++ + L+ + Sbjct: 461 GGKIQVDACLDVLRN-ELNVNIPVAGMVKDNCHRTNHLIFGDPTVGEELRTIPLDSKSQA 519 Query: 527 LYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 Y I R++DE HRFAIT HR K + S LDEI GIGP + LL++FG++K I +S Sbjct: 520 FYLITRIQDEVHRFAITFHRNLHNKNSLASKLDEIKGIGPRSRNKLLKNFGSLKKIREAS 579 Query: 586 PETLASIEGISKKIACKIYNHFHKNTS 612 E L I G++ A + + + Sbjct: 580 IEDLKGI-GLTLTQAQSVKLVLENSQN 605 >gi|167750941|ref|ZP_02423068.1| hypothetical protein EUBSIR_01926 [Eubacterium siraeum DSM 15702] gi|167656120|gb|EDS00250.1| hypothetical protein EUBSIR_01926 [Eubacterium siraeum DSM 15702] Length = 585 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 187/605 (30%), Positives = 308/605 (50%), Gaps = 30/605 (4%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTCTEVEALLLE 73 M D GR++YVGKA L+ R+ +Y H+ +H + ++ I + F VT +E++AL+LE Sbjct: 1 MKDKTGRIIYVGKAKALKNRVTTYFHALESHNAKTRKLVENIYDFDFIVTPSELDALVLE 60 Query: 74 ANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEK 133 ++IK+ P++NILL+DDK + YI IT K P + + + Y GPF S ++ Sbjct: 61 CSLIKQYNPKYNILLKDDKGYNYIKIT-KEPYPRISYALNCNDKNAEYLGPFTSGFTAKQ 119 Query: 134 TINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFL 191 ++ + R F SC R + RPCL + IKRC G CTG+I ++Y +H A +++ Sbjct: 120 AVDEVNRIFMFPSCHKVFPRDFRKERPCLNYHIKRCMGVCTGKIKQDEYNSLIHSAIEYM 179 Query: 192 SGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLY 248 G+ E++ M +A+ ++E A RDR+ A+ +++ D + D +L Sbjct: 180 QNGSKASVERLTEQMYEASENLEFEKAAKLRDRINAIEKMKDGQDIFSDKTYDFDVVALA 239 Query: 249 HNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP--CPENILLS 306 N LA I + G R T E Q+ S FL ++Y+ + P+ I + Sbjct: 240 QNVELASIAVMCYRGG--RITDKMNFFIGDEYDPGQMRSDFLVEYYSARTDAIPKQIYID 297 Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366 +E E++++LE F G+KV +TV ++GE + A NA + K+ + L Sbjct: 298 KEMEDSAILEEYFSALCGHKVTVTVAQRGEGLSRVLLAKQNASEYLSMKVGRTVKEINAL 357 Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426 +D K LP IP IE YD S++ S VG M+V K YRKF + +V Q+ Sbjct: 358 EDLAKLLGLPKIPTVIESYDISNLGEDSRVGGMIVYRNGRPYKAGYRKFTIK--NVIGQN 415 Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486 D A M+ VL+RR + + +E SF PD+++LDGGKG + A Q VL + Sbjct: 416 DYACMQEVLQRRIQRYLDGDE-----------SFAPLPDLILLDGGKGHVHAVQQVLDSM 464 Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546 NV I + + K K +GE + +N + + ++DE HRF+++ + Sbjct: 465 NVS--IPLYGLVKDDKHRTRA---IAAQGEEIQINANRKLFSLMTNIQDEVHRFSLSFQQ 519 Query: 547 KRRKKAAYS-PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 + KK Y L +I GIG + L++ F T + + +SP+ +AS+ + ++ A +IY+ Sbjct: 520 QTHKKKTYELELTKIKGIGEAKALALIKHFKTKQALKDASPDEIASVAKVKEEKAKEIYD 579 Query: 606 HFHKN 610 +N Sbjct: 580 FIKEN 584 >gi|55981517|ref|YP_144814.1| excinuclease ABC subunit C [Thermus thermophilus HB8] gi|81363901|sp|Q5SI32|UVRC_THET8 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|55772930|dbj|BAD71371.1| excinuclease ABC subunit C (UvrC) [Thermus thermophilus HB8] Length = 590 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 177/597 (29%), Positives = 277/597 (46%), Gaps = 38/597 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PGVY VLYVGKA +L+ R+KSY H+ RI + + F T Sbjct: 9 LPETPGVYLWK-RGEEVLYVGKAKSLRARVKSYFHAEGKARRIAE---EATGLDFIATRD 64 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 EVEALLLEAN+IK +P +N+LL+DDK +P++ +T+ P L R Y+GPF Sbjct: 65 EVEALLLEANLIKAHRPLYNVLLKDDKHYPFLKLTN-EPFPTLLVVRRVEEDGAKYYGPF 123 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 A+ + + R F LR + + R PCL + + RC PC G+ E Y E V Sbjct: 124 PEAGALRRIKTLIDRLFPLRKNSGYPMKRRRYPCLNYSMGRCLAPCVGKADPEAYQEVVR 183 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA----ALSHIQNHNDSIYNR 241 + + L G L +++ M +A + ++E A RD++ S Q D Sbjct: 184 QVEAVLEGRVDGLLQELEAKMREAARRLEFERAAEIRDQMEALRAFFSTDQQAFDPEMGD 243 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 +D + + LA +Q G+ G + ++ + + + ++ + P P Sbjct: 244 LDFLGMARSGALAVVQLYQVRSGRILGRISRVVEKEEATDEEILWAFLRDHYLEASPLPP 303 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--HTQKLSTE 359 +LL E+ L ++ G KV++ VPK+GEK +++E A NA + KL Sbjct: 304 LVLLPFPLEDLESLAELLKRRAGRKVELRVPKKGEKARLLELAERNARLALETELKLRER 363 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 LK LP P R+E YD SH+ G + V + V + +YR+ L Sbjct: 364 RGEHPALKALQDLLGLPARPWRLEGYDISHLQGQARVFSIAVFEGGRPKRQEYRRMRLK- 422 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 DD A M + RR++ +K+ + +DGG GQ+ AA Sbjct: 423 ---AGNDDYAAMEEGVFRRYTGSLKDLPLPDLLL---------------IDGGVGQVRAA 464 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 L++ + R+ ++ +AKG E +G L L + P L + LRDEAH+ Sbjct: 465 ARALERAGL--RLPLVGLAKGE------EVLVTPEGRELRLPLTHPALQLLIHLRDEAHQ 516 Query: 540 FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 + HRKRR + + L I GIG R+RLLL+ +G ++ + + E LA + G+S Sbjct: 517 NGLRYHRKRRSEELFRVLQGIPGIGEKRRRLLLERYGGLRALKEAPLEELARLPGMS 573 >gi|291531107|emb|CBK96692.1| Excinuclease ABC subunit C [Eubacterium siraeum 70/3] Length = 585 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 187/605 (30%), Positives = 308/605 (50%), Gaps = 30/605 (4%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTCTEVEALLLE 73 M D GR++YVGKA L+ R+ +Y H+ +H + ++ I + F VT +E++AL+LE Sbjct: 1 MKDKTGRIIYVGKAKALKNRVTTYFHALESHNAKTRKLVENIYDFDFIVTPSELDALVLE 60 Query: 74 ANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEK 133 ++IK+ P++NILL+DDK + YI IT K P + + + Y GPF S ++ Sbjct: 61 CSLIKQYNPKYNILLKDDKGYNYIKIT-KEPYPRISYALNCNDKNAEYLGPFTSGFTAKQ 119 Query: 134 TINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFL 191 ++ + R F SC R + RPCL + IKRC G CTG+I ++Y +H A +++ Sbjct: 120 AVDEVNRIFMFPSCHKVFPRDFRKERPCLNYHIKRCMGVCTGKIKQDEYNSLIHSAIEYM 179 Query: 192 SGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLY 248 G+ E++ M +A+ ++E A RDR+ A+ +++ D + D +L Sbjct: 180 QNGSKASVERLTEQMYEASENLEFEKAAKLRDRINAIEKMKDGQDIFSDKTYDFDVVALA 239 Query: 249 HNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP--CPENILLS 306 N LA I + G R T E Q+ S FL ++Y+ + P+ I + Sbjct: 240 QNVELASIAVMCYRGG--RITDKMNFFIGDEYDPGQMRSDFLVEYYSARTDAIPKQIYID 297 Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366 +E E++++LE F G+KV +TV ++GE + A NA + K+ + L Sbjct: 298 KEMEDSAILEEYFSALCGHKVTVTVAQRGEGLSRVLLAKQNASEYLSMKVGRTVKEINAL 357 Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426 +D K LP IP IE YD S++ S VG M+V K YRKF + +V Q+ Sbjct: 358 EDLAKLLGLPKIPTVIESYDISNLGEDSIVGGMIVYRNGRPYKAGYRKFTIK--NVIGQN 415 Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486 D A M+ VL+RR + + +E SF PD+++LDGGKG + A Q VL + Sbjct: 416 DYACMQEVLQRRIQRYLDGDE-----------SFAPLPDLILLDGGKGHVHAVQQVLDSM 464 Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546 NV I + + K K +GE + +N + + ++DE HRF+++ + Sbjct: 465 NVS--IPLYGLVKDDKHRTRA---IAAQGEEIQINANRKLFSLMTNIQDEVHRFSLSFQQ 519 Query: 547 KRRKKAAYS-PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 + KK Y L +I GIG + L++ F T + + +SP+ +AS+ + ++ A +IY+ Sbjct: 520 QTHKKKTYELELTKIKGIGEAKALALIKHFKTKQALKDASPDEIASVAKVKEEKAIEIYD 579 Query: 606 HFHKN 610 +N Sbjct: 580 FIKEN 584 >gi|237752277|ref|ZP_04582757.1| excinuclease abc subunit c [Helicobacter winghamensis ATCC BAA-430] gi|229375766|gb|EEO25857.1| excinuclease abc subunit c [Helicobacter winghamensis ATCC BAA-430] Length = 618 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 193/634 (30%), Positives = 313/634 (49%), Gaps = 55/634 (8%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQI 55 +++P GVY D G++LYVGKA NL+ RIKSY + N + RIT M+SQI Sbjct: 16 LKKIPNSSGVYHYFDTQGKLLYVGKAKNLKHRIKSYFRFTPNLAPAPNLSPRITQMVSQI 75 Query: 56 NNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS 115 ++R+ V E +AL+LE ++IK+LKP++N+LLRDDK++PY+ + + P + R Sbjct: 76 AHLRYIVVENENDALILENSLIKQLKPKYNVLLRDDKTYPYLCVDLQEDFPRILLTRKIF 135 Query: 116 TIQG-SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE 174 QG YFGPF+S ++S+ F L ++ + CL +QI RC PC G+ Sbjct: 136 KKQGLRYFGPFSSG--ARDLLDSIYEIFPLAQ--KESCKNGKKACLFYQIHRCLAPCEGK 191 Query: 175 ISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234 IS++ Y + + A + + + + + M Q + +E A+I RDR+A + ++ Sbjct: 192 ISTKDYAKILQNALECVENPKK-ILAPLEQKMLQLSQNLRFEEALILRDRIAKIKNLTPL 250 Query: 235 NDSIYNR---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLR 291 + + +D F+L A + F G+ + T LK++ + I L Sbjct: 251 SSVDFANLVDLDIFALVCEDKRAVLVKFFMRNGKIISSATQNLKSELGFDSLSIYKQALI 310 Query: 292 QFYTDKPC--PENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA 348 Y++ P+ IL+ + E T LE ++ G KV+I PK G+K+++ E A+ N Sbjct: 311 NHYSNTLPLVPKQILIPFDLGESTQELEYFLQEKVGKKVQIHFPKSGDKKRLCELAIQNG 370 Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 + ++ I F L + P R E++D SH G VG MVV F+ Sbjct: 371 KE---ILRLEQNDNEEIFNALKTLFCLQNTPYRFEVFDTSHHKGTQCVGAMVVYDGLDFI 427 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 K YR + ++ +D+ MR +L RR K S PD+ + Sbjct: 428 KESYRHY-----LLEGKDEYTQMREMLTRRIQDFQKE----------------SPPDLWV 466 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAK-----GPKRSAG--MEKFFVKKGEALVLN 521 LDGG GQ++ A+ +L+ V + +I IAK R+ G + + + L+ Sbjct: 467 LDGGAGQINLAKELLESAGV--NLEVIGIAKEKIDSKTHRAKGGAKDILRDENLKEYRLS 524 Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKM 580 M D L F+Q+LRDEAHRFAIT H+K+++K +S L I GIG + LL FG+ + Sbjct: 525 MSDKRLQFLQKLRDEAHRFAITFHQKQKQKTMQHSKLLSIKGIGKAIQNKLLAYFGSFEA 584 Query: 581 ISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I ++ + L + +SK A ++N ++ Sbjct: 585 IEKADLDELEKV--LSKTFAKSVFNALRSFQNNA 616 >gi|323342862|ref|ZP_08083094.1| excinuclease ABC subunit C [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463974|gb|EFY09168.1| excinuclease ABC subunit C [Erysipelothrix rhusiopathiae ATCC 19414] Length = 590 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 169/616 (27%), Positives = 285/616 (46%), Gaps = 53/616 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 +++P PG Y M + G ++YVGKA L+ R+ SY H H+ T M+ QI++ F Sbjct: 9 KLKRLPMEPGCYLMKNKNGEIIYVGKAKKLKNRVSSYFTGA-HDHKTTRMVRQIDDFEFI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHR-DSSTIQGS 120 +T TE E+L+LE N+IK +P+FNI+ DDKS+PY+ I + K P + R + Q Sbjct: 68 ITSTEKESLILEINLIKEHRPQFNIIFMDDKSYPYLKIPREGK-PEVLVARDRKQSKQFH 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGP+ A L + I + E+ Sbjct: 127 YFGPYPDATAARDMARLLNDSVPTGDTLLPN---------TLAIYSAFNRTGKRYTPEEL 177 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + L+G K+++ R M +A+ ++E A +++++L AL +I + ++ Sbjct: 178 NVWRQNVMSILNGNIKPFKDELERKMLEASQSLNFELAQVYKEKLHALDYIGDKQQVQFS 237 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 R D F + + I F G+ F+ QFY ++ Sbjct: 238 LNERFDLFHFAYYQGYIAIVGLFVRGGRLLERSMAVEACM--EEPLDAFVSFIAQFYENQ 295 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL- 356 P P+ I + + L ++ + P +G+K+ ++E NA + + Sbjct: 296 PVPKTIYVPDLVNAEELGDVLGAEVKV-------PLRGKKKTLLEITQKNAQQQLDDQFS 348 Query: 357 ---STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + L+D + + I RIE++DNSHI G AV VV + KNQYR Sbjct: 349 ILRERQQFKDEALRDLSAALGMSSIIHRIEVFDNSHISGAFAVSACVVYDDGEPNKNQYR 408 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++ LH + DD A M+ VL RR+ +L++ + PD++++DGGK Sbjct: 409 RYKLH----QGNDDVASMKEVLYRRYFRLMRESK--------------PMPDLILVDGGK 450 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 QL+AA VL L ++ R + S+ K + + G + +N + F+ ++ Sbjct: 451 PQLNAALEVLSDLELDLR--VCSLVKDDRHRTHA--LMREDGTLITINKTSSLFNFLMQM 506 Query: 534 RDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 +DE HRF IT HR RKK S LDE++G+G +R++ L + FG++K I +S ETL ++ Sbjct: 507 QDEVHRFVITYHRNLRKKAMTRSILDEVSGLGKVRQKELYKKFGSLKNIRAASLETLQTV 566 Query: 593 EGISKKIACKIYNHFH 608 + + +A +Y+ H Sbjct: 567 --LPEDVAGDLYDILH 580 >gi|225619074|ref|YP_002720300.1| Excinuclease ABC, C subunit [Brachyspira hyodysenteriae WA1] gi|225213893|gb|ACN82627.1| Excinuclease ABC, C subunit [Brachyspira hyodysenteriae WA1] Length = 613 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 174/627 (27%), Positives = 295/627 (47%), Gaps = 44/627 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 +++P+ GVY M D ++Y+GKA +L+KR+ SY +++N + T ++ I +I + Sbjct: 12 KLKRIPDKSGVYFMKDSKSEIIYIGKAKSLKKRVSSYFNNSNKDAKTTALVEHIRDIEYI 71 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG-- 119 +T EVEAL+LEA MI++ KP +NILL+D KSFP+I IT++H P + K R+ Sbjct: 72 LTENEVEALILEAEMIRKHKPHYNILLKDQKSFPFIAITNEH-FPRVIKARNVIDKDNAR 130 Query: 120 ---SYFGPFASVDAVEKTINSLQRTFFLRSCA-DSVFRHRTRPCLLFQIKRCSGPCTGEI 175 Y+GP+ + + + + + F LR C D + RPCL I +C+ PC I Sbjct: 131 KYKKYYGPYVAAERADNIVKFIIDNFKLRRCKYDFPLKRAIRPCLYHHIGKCTAPCADLI 190 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 E Y + + +A L G L ++ + M K ++E+A RD++ L +I Sbjct: 191 KEEDYDKTIDDAIMVLEGNVDELVARLKQEMFVHAEKLEFEAAKDLRDKIDLLKYITVEQ 250 Query: 236 DSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNA--------- 283 + +D Y I G+ TF +++ ++ Sbjct: 251 SIYIPESDDIDIIGAYGENGNYTIVILSVKGGKLADRKTFSMQSPNDEDYYNENGMSKYS 310 Query: 284 QILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQ 343 +ILS F Q+YT + S + + I + + + + ++ ++ Sbjct: 311 EILSAFFTQYYTHANLIPASI-STDFPLNDVDIIKDYLKQVSGRDVDIKLDKSRKGLMAI 369 Query: 344 ALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVG 403 A NA +K I + + F L P IE +D +HI G + MV Sbjct: 370 ANENAKHLFKEKALIREVPLGITR-LQEIFKLKKAPSIIESFDIAHIQGSYTMAGMVRFV 428 Query: 404 ENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSW 463 YR FN+ V DD A ++ + RR+ +L ++ Sbjct: 429 NGVSDNKNYRIFNMKT--VTGIDDFASIKEAVYRRYKRLRDEN--------------LTF 472 Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMR 523 PD++++DGGKGQL++A LK+L+++ + I+++AK + E + + E + L+ Sbjct: 473 PDLILIDGGKGQLNSAIEALKELDIKGQ-PIMALAKKFE-----EIYLPNRNEPVQLSDN 526 Query: 524 DPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMIS 582 +P F+Q++RDE HR+ ++H K+R + S L+ I GIG L F + I Sbjct: 527 EPARLFLQKVRDETHRWVNSSHGKKRSREMVRSELESIEGIGKKTIEKLYSHFINIDNIK 586 Query: 583 RSSPETLASIEGISKKIACKIYNHFHK 609 +S E++ +I GIS K A IY+HFHK Sbjct: 587 NASFESIRNIPGISYKAANNIYDHFHK 613 >gi|268608251|ref|ZP_06141978.1| excinuclease ABC subunit C [Ruminococcus flavefaciens FD-1] Length = 606 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 162/615 (26%), Positives = 292/615 (47%), Gaps = 26/615 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 + ++ PGVY M + ++Y+GKA NL R+ SY N +HT ++ M+S + + F Sbjct: 11 KTSKLTVSPGVYIMKNKKSDIIYIGKAKNLHNRVSSYFRENPDHTPKVAAMVSNVYDYDF 70 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E EALLLE ++IK+ KP++NILL+DDK + YI I+ + P + +++ G Sbjct: 71 IVTDSEYEALLLECSLIKQHKPKYNILLKDDKGYHYIRIS-DEEYPRITNEKNTIQ-PGR 128 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 Y GP+ S ++ ++ R F L +C + + RPCL + IK C G C G IS E Sbjct: 129 YLGPYTSGFITKEAVSEANRVFMLPTCHRKFPQDIGKGRPCLNYHIKMCMGVCRGRISRE 188 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y V +A +F+ G+ E++ MNQA ++E A + RDR+ A+ I Sbjct: 189 EYNNAVEQAVEFIRSGSAQSVERMEEEMNQAAENLEFEKAAMLRDRITAVKKAAEKQKMI 248 Query: 239 ---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D + + + + + F L+ + + + +Y Sbjct: 249 NSGVDSADIIGIAEYYDGVYVSVLMYRENRLYDKAVFELEKPDGVEDL-LSQFMQNFYYG 307 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P+ +++ E+ L+ +Q G + K+ VP++G + +++ A N+ K Sbjct: 308 KQDVPKTVIIGHMPEDAELITAMMEQQSGRRTKLHVPQKGRQLELLRLAKNNSAEYAAIK 367 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 + L+ K L P+ IE YD S++ S V MVV + +K Y++F Sbjct: 368 NDRTGKEVIALEQLAKSLGLAKPPRYIEAYDISNLSSESMVAGMVVFEDGRPLKKAYKRF 427 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 + ++ Q+D M VL+RR ++ + + F PD+++LDGGKG Sbjct: 428 TVKEQEL--QNDYGSMHEVLKRRLMHIVNQDGD---------EYFTRTPDLILLDGGKGH 476 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 ++A +L++L + I + + K K G + +N + R++D Sbjct: 477 VNAVAPILRELGL--NIPLFGMVKDNKHRTRA---IATGGREIQINGLRSAFDLVTRIQD 531 Query: 536 EAHRFAITT-HRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E HR+++ H K +KK S L + GIG + L+ + T + +++P+ LA G Sbjct: 532 EVHRYSVAFMHSKHKKKTYSSELLTVKGIGEKKAAKLMMKYKTRANLLQATPDELAVTAG 591 Query: 595 ISKKIACKIYNHFHK 609 ++ +A +++ H Sbjct: 592 VNITVAEELWRILHN 606 >gi|291544855|emb|CBL17964.1| Excinuclease ABC subunit C [Ruminococcus sp. 18P13] Length = 606 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 161/614 (26%), Positives = 294/614 (47%), Gaps = 25/614 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + + PGVY M +G+++Y+GKA NL+KR+ SY + NHT ++ M+SQ+ + + Sbjct: 11 KTAALTGSPGVYIMKQQSGQIIYIGKAKNLKKRVTSYFCRTPNHTPKVAKMVSQVYDYDY 70 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E EAL+LE ++IK+ KP++NILL+DDK + YI I+ P + + ++ G Sbjct: 71 IVTDSEYEALVLECSLIKQHKPKYNILLKDDKGYFYIKIS-DPPYPKITAEKQNTRKDGV 129 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSE 178 Y GP+ S +T++ + R F L +C + + RPCL + I +C G C G++ ++ Sbjct: 130 YLGPYTSSFVTRETVDEVNRVFKLPTCHRRFPQDFRKQRPCLNYHINQCMGLCRGKVDAQ 189 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 Y + EA ++ G+ E++ M +A + +E A RDR+ A+ + Sbjct: 190 TYRALIDEAVAYIRSGSEQSVERLTAQMEEAAEQLQFERAAQLRDRIKAIRKAGDSQKII 249 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D + + + + G+ +F D+E+T + + + + Sbjct: 250 DPDLADCDLIAAVSGGQESAVSVLMYRNGRLADKASFTF-HDAENTVQLLEEFVPQFYRE 308 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P ++LL +E + LL +Q G+ V + ++G+ K ++ A NA + + Sbjct: 309 RTDIPRHVLLEQEITDQELLAQLLTEQAGHPVHLETRQRGDAYKRLKMAKNNAAEAISLG 368 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 + L++ + + P IE YD S++ + V MVV +K Y++F Sbjct: 369 SDRTAKELLALEELARLLGMEKPPLYIEAYDISNLSSTAMVAGMVVFENGRPLKKAYKRF 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 ++ N + Q+D A M VLERRF + + F PD+++LDGGKGQ Sbjct: 429 SVRENQI--QNDYACMHEVLERRFREYKAATDE----------GFARLPDLILLDGGKGQ 476 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 ++A VL++L + + + + K K G + +N R + R++D Sbjct: 477 VNAVTPVLRELGIH--VPVYGMVKDNKHRTRA---IAYGGGEISMNSRQAAFQLLTRIQD 531 Query: 536 EAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 E HRF++ R K L ++ GIG + + L+ ++ T + + +S + LA G+ Sbjct: 532 EVHRFSVAYMHSRHKHTFGLSLTQVRGIGEKKAQKLILTYKTKEALKAASRDALAKTAGV 591 Query: 596 SKKIACKIYNHFHK 609 + + A +Y + Sbjct: 592 TGETADALYQFIQE 605 >gi|313125020|ref|YP_004035284.1| excinuclease ABC subunit c [Halogeometricum borinquense DSM 11551] gi|312291385|gb|ADQ65845.1| Excinuclease ABC subunit C [Halogeometricum borinquense DSM 11551] Length = 581 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 180/610 (29%), Positives = 293/610 (48%), Gaps = 51/610 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVYQ LD VLYVGKA +++ R++SY ++ RI M+ + I F VT Sbjct: 12 DLPTDPGVYQFLDG-DTVLYVGKAVDIRARVRSY--ADPRGERIRQMVERAGAIDFAVTD 68 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLEAN++KR +PR+N+ L+DDKS+P + +T H +P + RD + FGP Sbjct: 69 TETQALLLEANLVKRHQPRYNVRLKDDKSYPLVQLT-DHPVPRIEVTRDPEE-GATVFGP 126 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + VE + +L+ T+ +R C+D + +R RPCL +++ C+ PCTGEI+ Y E V Sbjct: 127 YTDKGRVETVVKALRETYGVRGCSDHKYANRDRPCLDYEMGLCTAPCTGEIAESDYREDV 186 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 +F G L + + R M +A E++E A RD+L A+ + Sbjct: 187 ESIVRFFEGETGVLADPLRRTMEEAAQAENFERAANARDKLEAVESFHGAGEEAVTSQSD 246 Query: 243 ----DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQIL-SYFLRQFYTDK 297 D + + A + GQ L + + S FL Q+Y ++ Sbjct: 247 ERAVDVLGVAIEGDAATVARLHSERGQLVDRSRHRLDAPEGGERSAAVLSAFLTQYYAER 306 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P+ ILLSE ++ ++E + V + VP G + K+I+ AL NA R Sbjct: 307 ELPDAILLSERPDDDDVVEWLNVEG----VSVRVPGAGREAKLIDLALKNARRGP----- 357 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + L ++ +P RIE +D SH G + VG V + K YR+ L Sbjct: 358 ---TRDDGLAVLAERLDIPRPS-RIEGFDVSHAQGKAVVGSDVCFVDGSAEKADYRRKKL 413 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 DD MR ++ R + ++ ++ PD++++DGG GQL Sbjct: 414 PER----NDDYENMRALIRWRAERAVEGRDDRPD------------PDLLLIDGGDGQLG 457 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 AA+ L ++ + + I++AK E+ + P L+ +QR+RDEA Sbjct: 458 AARDALTEVGWD--VPAIALAKD-------EELVITPDGVYDWPSDAPHLHVLQRVRDEA 508 Query: 538 HRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 HRFA+ H+ R + LD++ G+G +R LL+ FG+V+ + ++ L + G+ + Sbjct: 509 HRFAVQYHQTLRD-DVRTVLDDVPGVGEKTRRALLRRFGSVENVRAATTADLTDVPGVGE 567 Query: 598 KIACKIYNHF 607 K A ++ Sbjct: 568 KTATELKQRL 577 >gi|291333596|gb|ADD93289.1| excinuclease ABC subunit C [uncultured archaeon MedDCM-OCT-S09-C13] Length = 575 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 165/610 (27%), Positives = 274/610 (44%), Gaps = 48/610 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY GRVLYVGKA L +RI+SY +N I ++++ +++ VT Sbjct: 9 DLPASPGVYLFKTNEGRVLYVGKATRLNERIRSYFATNPDRQMIPELVARADDVECIVTT 68 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 T EAL+LE +I+ KPRFN +L+DDKS+PY+++T++ P + R + GP Sbjct: 69 TPQEALILERQLIREHKPRFNSMLKDDKSYPYLVLTNEE-FPRIMYTRHPPKKAHRW-GP 126 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F + A ++ + L+R F +R C + + + CL I C+GPC Y E V Sbjct: 127 FPNAGAAKQVMQLLRRHFGIRDCKELLPQG----CLAMHIGLCTGPCI---DGTGYGEQV 179 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241 KK L G L E++ M+Q + + +E A +RD + ++ + Y Sbjct: 180 RAVKKILDGEATELLEELGGKMDQCSQEMQFERAGYYRDLIRSIRTTIGQHVVSSKLYRD 239 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D +LA + G +G + + + +S F+ + Y + Sbjct: 240 CDAIGFAEQGDLAALVVLHADDGVVKGQEVWPYVHRGD--IGETVSRFIAEHYLHRR--P 295 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI- 360 LL L+ ++ G V++ P +G+ + A NA T+ + Sbjct: 296 PRLLLTPTPLLDGLQSWLDERRGSAVEVRTPMRGDMVTLRTLADQNAEIQVTRLANKSSG 355 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S + D + +D + + G VG VV+ K +YR + + + Sbjct: 356 SLEQRAADEAATLLNMEQMNHVVCFDMAQLQGDERVGASVVMRNGRPAKKEYRTYIVKGD 415 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 DD MM V+ER + + WPD+++LDGG+ L + Sbjct: 416 ---AMDDLRMMSEVVERWLKRQEE------------------WPDLLLLDGGETHLKTIR 454 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 +L + V +R + ++AK E K + +VL+ R I RDEAHRF Sbjct: 455 AMLDEHGVHDRFELAALAKRE------ETLHRKGNDPIVLDRRGRIFV---HARDEAHRF 505 Query: 541 AITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 T HRKRRKK+ PL+++ G+G + + LL+ FG + I+ +S E L ++ GI + Sbjct: 506 VNTFHRKRRKKSRLGDPLEDVLGLGAKKLQSLLRHFGGRQGINNASIEDLKTVPGIGPSL 565 Query: 600 ACKIYNHFHK 609 A +I+ H+ Sbjct: 566 AERIHESLHR 575 >gi|255349189|ref|ZP_05381196.1| excinuclease ABC subunit C [Chlamydia trachomatis 70] gi|255503726|ref|ZP_05382116.1| excinuclease ABC subunit C [Chlamydia trachomatis 70s] Length = 598 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 181/615 (29%), Positives = 291/615 (47%), Gaps = 42/615 (6%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFT 61 + + PGVY M D G VLYVGKA NL+ R+ SY+ + RI ++ + +I Sbjct: 8 LKDVSSSPGVYLMKDSQGTVLYVGKAKNLRNRLSSYLQKKGDSRERIPFLMKKTTDIDTI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS----TI 117 V E EA+LLE N+IK+ +PR+N+LL+DDK+F + ++ +H P + R + Sbjct: 68 VVSNETEAILLENNLIKKYQPRYNVLLKDDKTFFCLSVSLEHPWPRIEAIRTRALSPGKK 127 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 + FGP+ S +A + + F LR+C+D F R RPC+L+++KRC PC G S Sbjct: 128 KQWLFGPYVSAEACYALLEVISLWFPLRTCSDREFSTRQRPCVLYEMKRCLAPCVGLCSQ 187 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 +Y E + +A FL G + + + + +A+ ++ +E A L + Sbjct: 188 TEYQETLDKAVLFLKGDVRSTISNLEKAIEKASQEQKFEHAAALYRTLTLIRQTMAKQHV 247 Query: 238 ---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 +D LY +LA + + G+ G F +++ +A S+ L+ + Sbjct: 248 EKFQAYDIDVLGLYRKGSLAIVSVLSVYSGKLLGARYFIFPENAQEDSALFSSFILQYYA 307 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 + P+ I + + L + KI PK ++++ A NA Sbjct: 308 ENPRIPKEIFVPVSLDSPELP---YLLNTAEPPKIRCPKTEYGKELLALAHKNAAEQAKP 364 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 S ++ F L P RIE YDN+H+ G VG +V F QYR Sbjct: 365 F----NSITPPYEELQHFFNLSQYPYRIECYDNAHLQGEHNVGVCIVFENGLFSPKQYRT 420 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F++ DD A VL RRF L P+++++DGG+ Sbjct: 421 FSI----TSHGDDLAAFEEVLTRRFRSLTTE-----------------LPNLIVIDGGRN 459 Query: 475 QLSAAQGVLKKLNVENRITIISIAK---GPKRSAGMEKFFVKK-GEALVLNMRDPILYFI 530 Q AQ +L++LN+ IT+++IAK +S EK F + + ++L+ IL F Sbjct: 460 QFKRAQRILEELNLTG-ITVVTIAKESGNHSKSLRQEKLFCETFPQGILLHPTSAILQFF 518 Query: 531 QRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 Q LRDEAHRFAI +RK+ KA + +I GIG ++ + LLQ F + K + +S E L Sbjct: 519 QLLRDEAHRFAIQHYRKKHAKAVLTT-KKIPGIGEVKTKRLLQKFKSWKRVFIASEEELK 577 Query: 591 SIEGISKKIACKIYN 605 +++GI+ K +I Sbjct: 578 TVQGITAKDIQRIQE 592 >gi|15605524|ref|NP_220310.1| excinuclease ABC subunit C [Chlamydia trachomatis D/UW-3/CX] gi|76789533|ref|YP_328619.1| excinuclease ABC subunit C [Chlamydia trachomatis A/HAR-13] gi|8134795|sp|O84796|UVRC_CHLTR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|92058692|sp|Q3KKQ1|UVRC_CHLTA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|3329256|gb|AAC68386.1| Excinuclease ABC, Subunit C [Chlamydia trachomatis D/UW-3/CX] gi|76168063|gb|AAX51071.1| excinuclease ABC subunit C [Chlamydia trachomatis A/HAR-13] gi|296437271|gb|ADH19441.1| excinuclease ABC subunit C [Chlamydia trachomatis G/11222] gi|297748919|gb|ADI51465.1| Excinuclease ABC subunit C [Chlamydia trachomatis D-EC] gi|297749799|gb|ADI52477.1| Excinuclease ABC subunit C [Chlamydia trachomatis D-LC] Length = 598 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 180/615 (29%), Positives = 291/615 (47%), Gaps = 42/615 (6%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHR-ITHMISQINNIRFT 61 + + PGVY M D G VLYVGKA NL+ R+ SY+ + + I ++ + +I Sbjct: 8 LKDVSSSPGVYLMKDSQGTVLYVGKAKNLRNRLSSYLQKKGDSRKRIPFLMKKTTDIDTI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS----TI 117 V E EA+LLE N+IK+ +PR+N+LL+DDK+F + ++ +H P + R + Sbjct: 68 VVSNETEAILLENNLIKKYQPRYNVLLKDDKTFFCLSVSLEHPWPRIEAIRTRALSPGKK 127 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 + FGP+ S +A + + F LR+C+D F R RPC+L+++KRC PC G S Sbjct: 128 KQWLFGPYVSAEACYALLEVISLWFPLRTCSDREFSTRQRPCVLYEMKRCLAPCVGLCSQ 187 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 +Y E + +A FL G + + + + +A+ ++ +E A L + Sbjct: 188 TEYQETLDKAVLFLKGDVRSTISNLEKAIEKASQEQKFEHAAALYRTLTLIRQTMAKQHV 247 Query: 238 ---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 +D LY +LA + + G+ G F +++ +A S+ L+ + Sbjct: 248 EKFQAYDIDVLGLYRKGSLAIVSVLSVYSGKLLGARYFIFPENAQEDSALFSSFILQYYA 307 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 + P+ I + + L + KI PK ++++ A NA Sbjct: 308 ENPRIPKEIFVPVSLDSPELP---YLLNTAEPPKIRCPKTEYGKELLALAHKNAAEQAKP 364 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 S ++ F L P RIE YDN+H+ G VG +V F QYR Sbjct: 365 F----NSITPPYEELQHFFNLSQYPYRIECYDNAHLQGEHNVGVCIVFENGLFSPKQYRT 420 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F++ DD A VL RRF L P+++++DGG+ Sbjct: 421 FSI----TSHGDDLAAFEEVLTRRFRSLTTE-----------------LPNLIVIDGGRN 459 Query: 475 QLSAAQGVLKKLNVENRITIISIAK---GPKRSAGMEKFFVKK-GEALVLNMRDPILYFI 530 Q AQ +L++LN+ IT+++IAK +S EK F + + ++L+ IL F Sbjct: 460 QFKRAQRILEELNLTG-ITVVTIAKESGNHSKSLRQEKLFCETFPQGILLHPTSAILQFF 518 Query: 531 QRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 Q LRDEAHRFAI +RK+ KA + +I GIG ++ + LLQ F + K + +S E L Sbjct: 519 QLLRDEAHRFAIQHYRKKHAKAVLTT-KKIPGIGEVKTKRLLQKFKSWKRVFIASEEELK 577 Query: 591 SIEGISKKIACKIYN 605 +++GI+ K +I Sbjct: 578 TVQGITAKDIQRIQE 592 >gi|322368185|ref|ZP_08042754.1| excinuclease ABC subunit C [Haladaptatus paucihalophilus DX253] gi|320552201|gb|EFW93846.1| excinuclease ABC subunit C [Haladaptatus paucihalophilus DX253] Length = 577 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 182/609 (29%), Positives = 286/609 (46%), Gaps = 49/609 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P GVYQ L V YVGKA +L+ R++SY ++ + RI M+ + + + F VT Sbjct: 12 ELPRESGVYQFL-EDETVRYVGKAVDLRARVRSY--ADPRSDRIGRMVERADALDFAVTD 68 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLEAN+IKR +PR+N+ L+DDKS+P + +T H+ P + RD + FGP Sbjct: 69 TETQALLLEANLIKRYQPRYNVRLKDDKSYPLVQVT-GHEFPQIEITRDPDRTGATVFGP 127 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F + VE + +L+ T+ +R C+D F +R RPCL I C+ PCT EI E Y+ V Sbjct: 128 FTNKSTVETVVKALRETYGIRGCSDHKFANRDRPCLDHDIGLCTAPCTNEIGREAYLGDV 187 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN------HNDSI 238 ++FL G L + R M A ++E A RDRL A+ + + Sbjct: 188 ESVERFLGGEVDVLARPLRREMEAAAQNREFERAANLRDRLEAVESFHGGDAGAISSRTD 247 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 +D A + GQ L A +L F+ QFY ++ Sbjct: 248 ERTVDVLGAAVEGERATVARLHSERGQLVDRDHHSLSVPDGDDAAAVLGGFIPQFYAERE 307 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P+ +LLSE ++ +L+ + G +V G + +++ AL NA R Sbjct: 308 LPDALLLSERPDDADVLDWLDAEGVGTRVPG----AGREATLVDLALKNARRG------- 356 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + L+ +LP RIE +D SH G S VG VV+ K YR+ L Sbjct: 357 -AGNPDELRALADALSLPSAE-RIEGFDVSHAQGSSVVGSNVVLVGGSPEKRDYRRKKLT 414 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 DD A M ++ R + ++ + PD++++DGG+GQL A Sbjct: 415 EK----NDDYANMHDLVRWRAKRAVEGRDERPD------------PDLLLIDGGEGQLDA 458 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ L + + + + +AK E+ V P L+ +QR+RDEAH Sbjct: 459 AREALTDIGWD--VPAVGLAK-------AEEIVVTPNGTYNWPNDAPHLHVLQRVRDEAH 509 Query: 539 RFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 RFA+ H+ R + LD+++G+GP +R L + FG++ I +S L ++GI +K Sbjct: 510 RFAVQYHQTLRD-DVSTALDDVSGVGPQTRRKLFRRFGSLDGIRAASDAELRDVDGIGEK 568 Query: 599 IACKIYNHF 607 + Sbjct: 569 TVTALRRRL 577 >gi|297171681|gb|ADI22675.1| nuclease subunit of the excinuclease complex [uncultured Gemmatimonadales bacterium HF0500_22O06] Length = 552 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 164/572 (28%), Positives = 270/572 (47%), Gaps = 37/572 (6%) Query: 51 MISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYK 110 M+ ++++ + +E EAL+LEAN+IK +PRFNILLRDDK +PYI +T K P +Y Sbjct: 1 MVRLVDSVDSIIVGSEAEALILEANLIKEHQPRFNILLRDDKKYPYIKVTVKEPFPRVYV 60 Query: 111 HRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSG 169 R YFGP+ SV+ + + + + R +RSC S+ + RPCL + I+RC Sbjct: 61 TRRIVNDGSRYFGPYTSVNQMRQALEVINRLHTVRSCRYSLPKDSPDRPCLDYHIQRCKA 120 Query: 170 PCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRL---A 226 PC G + +Y + + L G ++ +I M +A+ D+E A RD + Sbjct: 121 PCVGLQTESEYRGMIDDILNILEGDTEEIRSQIEARMMEASGGLDFELAAKMRDVIAGLD 180 Query: 227 ALSHIQNHNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQIL 286 ++ Q + + +D L + LA G T N +L Sbjct: 181 VIAREQRVHRTQGGNIDIVGLARDDKLAAGVVLKVRSGLLLSRVTQRFGEILNEKNQDLL 240 Query: 287 SYFLRQFYTDK------PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKI 340 S + + Y P +LL + LLE + GY+V++T+P++GEK ++ Sbjct: 241 SSLVSRHYLGGGDEGMVDLPRTVLLPNSFSDQDLLEEILTEAAGYRVRLTIPQRGEKLRL 300 Query: 341 IEQALINAHRSHTQKL----STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAV 396 E A +NA + ++ + + L + L +P+ + +D SH+ G V Sbjct: 301 SELAEVNARQVLEDQVIALAYADNRAEDALFSLQDELDLKVVPRLMVCFDVSHMQGKETV 360 Query: 397 GCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQ 456 VV + YR + + DD M+ + R F + + Sbjct: 361 ASAVVFQNGEPSRADYRHMRIKGD--WGNDDFQSMQEAVYRYFRRRLDEG---------- 408 Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE 516 PD+V++DGGK QLSAAQ L++ I +I++AK + F K Sbjct: 409 ----TPLPDLVVIDGGKPQLSAAQNAFAYLDLPG-IAVIALAKKEEA-----VFAPGKKT 458 Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSF 575 L L+ R+ L+ +QR+RDEAHRFA+ +RK R K+ S L +I GIG R+ +LL+ F Sbjct: 459 PLRLDRRNRALHILQRIRDEAHRFAVRYNRKLRTKRTLRSELGDIPGIGLRRQTVLLRRF 518 Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHF 607 G++K + ++ E +A + G SK +A ++ + Sbjct: 519 GSLKGVKSATKEEIARVPGFSKALASRVLTYL 550 >gi|139439822|ref|ZP_01773199.1| Hypothetical protein COLAER_02230 [Collinsella aerofaciens ATCC 25986] gi|133774837|gb|EBA38657.1| Hypothetical protein COLAER_02230 [Collinsella aerofaciens ATCC 25986] Length = 601 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 165/603 (27%), Positives = 280/603 (46%), Gaps = 49/603 (8%) Query: 35 IKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSF 94 ++ Y+ + +I M+ + + + V TE EAL+LE N+I + P FN+ L+DDKS+ Sbjct: 1 MRQYVTLQDERQKIPLMMQLVASFDYIVVETEHEALVLERNLIGQYHPYFNVDLKDDKSY 60 Query: 95 PYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH 154 P+I IT PA+ R+ YFGP+ A +TI++L++ + S + + +R Sbjct: 61 PFIAITKSDLFPAIKYTRERHKPGTRYFGPYTDSRAARETIDTLRKVIPICSASCAEWRR 120 Query: 155 ---------------------RTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSG 193 RPC + + R G C G IS Y + V ++FLSG Sbjct: 121 CRRIVESHKGEEDIVNMICAQNGRPCFDYHVGRGPGACVGAISPADYAKNVKRVERFLSG 180 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHN 250 ++ +++ M +A D+E A + RL + + + ++ +D Y Sbjct: 181 HRKDVVDELTSEMTEAAETLDFERAARVKRRLEVIRGLDDRQQVVFPSSVDIDVIGFYRE 240 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-KPCPENILLSEEA 309 + ++ G+ TC F L + ++ S FL+++Y + P I LS E Sbjct: 241 ETISAACVFVVREGRTVRTCEFILDKGLDVDEEELQSGFLKRYYDETADIPAEINLSVEL 300 Query: 310 EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST----EISHQMI 365 E+ L + + P++GEK ++++ A NA + + + + Sbjct: 301 EDAEALGEWLAGKRERSCHLHRPQRGEKHRLLDMASKNARHALMRYMMRTGYADDRTNQA 360 Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 L + ALP P RIE +D S + G V MVV K QYR+F + + Sbjct: 361 LLELESALALPAPPLRIECFDISTLHGTFTVASMVVFTNGRADKGQYRRFKIQAE-LDEA 419 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 +D M VL RR+ + + F S PD++++DGGK QL+AA L+ Sbjct: 420 NDFVSMSEVLGRRY-----------APERMADERFGSRPDLLVVDGGKPQLTAAIKQLEA 468 Query: 486 LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545 L ++ I + +AK + E F +VL LY I+++RDE+HRFAIT H Sbjct: 469 LGLD--IPVCGLAKADE-----EVFVPWDETPVVLPTGSASLYLIKQVRDESHRFAITFH 521 Query: 546 RKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 R+ R KA S LD++ G+GP RKR +++ FG++K + +S + +A + G+ +A ++ Sbjct: 522 RELRDKAMTVSVLDDVPGVGPTRKRAIMRHFGSMKRLRAASEQEIAEVRGVPADVAKAVH 581 Query: 605 NHF 607 Sbjct: 582 EAL 584 >gi|255507407|ref|ZP_05383046.1| excinuclease ABC subunit C [Chlamydia trachomatis D(s)2923] gi|296435415|gb|ADH17593.1| excinuclease ABC subunit C [Chlamydia trachomatis E/150] gi|296439132|gb|ADH21285.1| excinuclease ABC subunit C [Chlamydia trachomatis E/11023] Length = 598 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 181/615 (29%), Positives = 291/615 (47%), Gaps = 42/615 (6%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFT 61 + + PGVY M D G VLYVGKA NL+ R+ SY+ + RI ++ + +I Sbjct: 8 LKDVSSSPGVYLMKDSQGTVLYVGKAKNLRNRLSSYLQKKGDSRERIPFLMKKTTDIDTI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS----TI 117 V E EA+LLE N+IK+ +PR+N+LL+DDK+F + ++ +H P + R + Sbjct: 68 VVSNETEAILLENNLIKKYQPRYNVLLKDDKTFFCLSVSLEHPWPRIEAIRTRALSPGKK 127 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 + FGP+ S +A + + F LR+C+D F R RPC+L+++KRC PC G S Sbjct: 128 KQWLFGPYVSAEACYALLEVISLWFPLRTCSDREFSTRQRPCVLYEMKRCLAPCVGLCSQ 187 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 +Y E + +A FL G + + + + +A+ ++ +E A L + Sbjct: 188 TEYQETLDKAVLFLKGDVRSTISNLEKAIEKASQEQKFEHAAALYRTLTLIRQTMAKQHV 247 Query: 238 ---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 +D LY +LA + + G+ G F +++ +A S+ L+ + Sbjct: 248 EKFQAYDIDVLGLYRKGSLAIVSVLSVYSGKLLGARYFIFPENAQEDSALFSSFILQYYA 307 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 + P+ I + + L + KI PK ++++ A NA Sbjct: 308 ENPRIPKEIFVPVSLDSPELP---YLLNTAEPPKIRCPKTEYGKELLALAHKNAAEQAKP 364 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 S ++ F L P RIE YDN+H+ G VG +V F QYR Sbjct: 365 F----NSITPPYEELQHFFNLSQYPYRIECYDNAHLQGEHNVGVCIVFENALFSPKQYRT 420 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F++ DD A VL RRF L P+++++DGG+ Sbjct: 421 FSI----TSHGDDLAAFEEVLTRRFRSLTTE-----------------LPNLIVIDGGRN 459 Query: 475 QLSAAQGVLKKLNVENRITIISIAK---GPKRSAGMEKFFVKK-GEALVLNMRDPILYFI 530 Q AQ +L++LN+ IT+++IAK +S EK F + + ++L+ IL F Sbjct: 460 QFKRAQRILEELNLTG-ITVVTIAKESGNHSKSLRQEKLFCETFPQGILLHPTSAILQFF 518 Query: 531 QRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 Q LRDEAHRFAI +RK+ KA + +I GIG ++ + LLQ F + K + +S E L Sbjct: 519 QLLRDEAHRFAIQHYRKKHAKAVLTT-KKIPGIGEVKTKRLLQKFKSWKRVFIASEEELK 577 Query: 591 SIEGISKKIACKIYN 605 +++GI+ K +I Sbjct: 578 TVQGITAKDIQRIQE 592 >gi|284166895|ref|YP_003405174.1| excinuclease ABC subunit C [Haloterrigena turkmenica DSM 5511] gi|284016550|gb|ADB62501.1| excinuclease ABC, C subunit [Haloterrigena turkmenica DSM 5511] Length = 597 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 181/631 (28%), Positives = 296/631 (46%), Gaps = 69/631 (10%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ +P PGVYQ G LYVGKA +L+ R++SY ++ T RI M+ + + I V Sbjct: 10 AKSLPREPGVYQFR-AEGTTLYVGKAVDLRSRVRSY--ADPRTARIRRMVDRADEIEIAV 66 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS------- 115 T TE +ALLLEAN+IKR +PR+N+ L+DDKS+P + +TD P + RD Sbjct: 67 TDTETQALLLEANLIKRHQPRYNVRLKDDKSYPMVQLTDHEA-PRIEITRDPDGEAQGAS 125 Query: 116 ------TIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSG 169 + FGPF + VE + +L+ T+ +R C+D + R RPCL +++ C+ Sbjct: 126 SASGGAASGPTVFGPFTNKGQVETVVKALRETYGVRGCSDHKYSGRDRPCLDYEMGLCTA 185 Query: 170 PCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALS 229 PCT EI E Y + V ++F G L + + R M A +++E A RDRL + Sbjct: 186 PCTREIDLESYAQDVTAVERFFEGETGILADPLRREMEAAAEDQNFERAANLRDRLETVE 245 Query: 230 HIQN------HNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN- 282 + +D + A + G+ L+ + Sbjct: 246 TFHGEGGEAVQSVGDERAVDVLGVAIEGEDATVARLRAERGKLVDRDRHTLEAPAAEGAG 305 Query: 283 ------AQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGE 336 +L+ F+ Q+Y ++ P+ +LL E + + + V + VP G Sbjct: 306 TEEGGVPAVLAAFIVQYYAERDLPDALLLPERHGDDEVAAWLEAEG----VSVRVPGAGR 361 Query: 337 KRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAV 396 + K+++ AL NA R+ +L D + +R+E +D SH G SAV Sbjct: 362 EAKLVDLALKNARRNVGG-----RDECGMLADALEID----AARRVEGFDVSHAQGKSAV 412 Query: 397 GCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQ 456 G V + K YR+ L DD MR +LE R S+ ++ ++ Sbjct: 413 GSDVTFVDGSAEKADYRRKKLTDQ----NDDYDNMRALLEWRASRAVEGRDDRPD----- 463 Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE 516 PD++++DGG+GQL AA+ L + + + +++AK +R V Sbjct: 464 -------PDLLLIDGGEGQLEAARDALAAVGWD--VPAVALAKAEER-------VVTPDR 507 Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFG 576 P L+ +QR+RDEAHRFA+ H+ R + + LD++ G+GP ++ LL FG Sbjct: 508 TFSWPSDAPHLHLLQRVRDEAHRFAVQYHQTVRDE-VKTVLDDVPGVGPETRKRLLGRFG 566 Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNHF 607 +V+ + +S + + S+EGI +K A I + Sbjct: 567 SVENVREASVDDIESVEGIGEKTAETIKSRL 597 >gi|296436341|gb|ADH18515.1| excinuclease ABC subunit C [Chlamydia trachomatis G/9768] gi|296438200|gb|ADH20361.1| excinuclease ABC subunit C [Chlamydia trachomatis G/11074] gi|297140701|gb|ADH97459.1| excinuclease ABC subunit C [Chlamydia trachomatis G/9301] Length = 598 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 179/615 (29%), Positives = 290/615 (47%), Gaps = 42/615 (6%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHR-ITHMISQINNIRFT 61 + + PGVY M D G VLYVGKA NL+ R+ SY+ + + I ++ + +I Sbjct: 8 LKDVSSSPGVYLMKDSQGTVLYVGKAKNLRNRLSSYLQKKGDSRKRIPFLMKKTTDIDTI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS----TI 117 V E EA+LLE N+IK+ +PR+N+LL+DDK+F + ++ +H P + R + Sbjct: 68 VVSNETEAILLENNLIKKYQPRYNVLLKDDKTFFCLSVSLEHPWPRIEAIRTRALSPGKK 127 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 + FGP+ S +A + + F LR+C+D F R RPC+L+++KRC PC G S Sbjct: 128 KQWLFGPYVSAEACYALLEVISLWFPLRTCSDREFSTRQRPCVLYEMKRCLAPCVGLCSQ 187 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 +Y E + +A FL G + + + + +A+ ++ +E A L + Sbjct: 188 TEYQETLDKAVLFLKGDVRSTISNLEKAIEKASQEQKFEHAAALYRTLTLIRQTMAKQHV 247 Query: 238 ---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 +D LY +LA + + G+ G F +++ +A S+ L+ + Sbjct: 248 EKFQAYDIDVLGLYRKGSLAIVSVLSVYSGKLLGARYFIFPENAQEDSALFSSFILQYYA 307 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 + P+ I + + L + KI PK ++++ A NA Sbjct: 308 ENPRIPKEIFVPVSLDSPELP---YLLNTAEPPKIRCPKTEYGKELLALAHKNAAEQAKP 364 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 S ++ F L P RIE YDN+H+ G VG +V F QY Sbjct: 365 F----NSITPPYEELQHFFNLSQYPYRIECYDNAHLQGEHNVGVCIVFENGLFSPKQYCT 420 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F++ DD A VL RRF L P+++++DGG+ Sbjct: 421 FSI----TSHGDDLAAFEEVLTRRFRSLTTE-----------------LPNLIVIDGGRN 459 Query: 475 QLSAAQGVLKKLNVENRITIISIAK---GPKRSAGMEKFFVKK-GEALVLNMRDPILYFI 530 Q AQ +L++LN+ IT+++IAK +S EK F + + ++L+ IL F Sbjct: 460 QFKRAQRILEELNLTG-ITVVTIAKESGNHSKSLRQEKLFCETFPQGILLHPTSAILQFF 518 Query: 531 QRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 Q LRDEAHRFAI +RK+ KA + +I GIG ++ + LLQ F + K + +S E L Sbjct: 519 QLLRDEAHRFAIQHYRKKHAKAVLTT-KKIPGIGEVKTKRLLQKFKSWKRVFIASEEELK 577 Query: 591 SIEGISKKIACKIYN 605 +++GI+ K +I Sbjct: 578 TVQGITAKDIQRIQE 592 >gi|301335372|ref|ZP_07223616.1| excinuclease ABC subunit C [Chlamydia trachomatis L2tet1] Length = 598 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 181/615 (29%), Positives = 292/615 (47%), Gaps = 42/615 (6%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFT 61 + + PGVY M D G VLYVGKA NL+ R+ SY+ + RI ++ + +I Sbjct: 8 LKDVSSSPGVYLMKDSQGTVLYVGKAKNLRNRLSSYLQKKGDSRERIPFLMKKTTDIDTI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS----TI 117 V E EA+LLE N+IK+ +PR+N+LL+DDK+F + ++ +H P + R + Sbjct: 68 VVSNETEAILLENNLIKKYQPRYNVLLKDDKTFFCLSVSLEHPWPRIEAIRTRALSPGKK 127 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 + FGP+ S +A + + F LR+C+D F R RPC+L+++KRC PC G S Sbjct: 128 KQWLFGPYVSAEACYALLEVISLWFPLRTCSDREFSTRQRPCVLYEMKRCLAPCVGLCSQ 187 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 +Y E + +A FL G + + + + +A+ ++ +E A L + Sbjct: 188 TEYQETLDKAILFLKGDVRSTISNLEKAIEKASQEQKFEHAAALYRTLTLIRQTMAKQHV 247 Query: 238 ---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 +D LY +LA + + G+ G F +++ +A S+ L+ + Sbjct: 248 EKFQAYDIDVLGLYRKGSLAIVSVLSVYSGKLLGARYFIFPENAQEDSALFSSFILQYYA 307 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 + P+ I + + L + KI PK ++++ A NA Sbjct: 308 ENPRIPKEIFVPVSLDSPELP---YLLNTAEPPKIRCPKTEYGKELLALAHKNAAEQAKP 364 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 S ++ F L P RIE YDN+H+ G VG +V + F QYR Sbjct: 365 F----NSITPPYEELQHFFNLSQYPYRIECYDNAHLQGEHNVGVCIVFENDLFSPKQYRT 420 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F++ DD A VL RRF L P+++++DGG+ Sbjct: 421 FSI----TSHGDDLAAFEEVLTRRFRSLTTE-----------------LPNLIVIDGGRN 459 Query: 475 QLSAAQGVLKKLNVENRITIISIAK---GPKRSAGMEKFFVKK-GEALVLNMRDPILYFI 530 Q AQ +L++LN+ IT+++IAK +S EK F + + ++L+ IL F Sbjct: 460 QFKRAQRILEELNLTG-ITVVTIAKESGNHSKSLRQEKLFCETFPQGILLHPTSAILQFF 518 Query: 531 QRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 Q LRDEAHRFAI +RK+ KA + +I GIG ++ + LLQ F + K + +S E L Sbjct: 519 QLLRDEAHRFAIQHYRKKHAKAVLTT-KKIPGIGEVKTKRLLQKFKSWKRVFIASEEELK 577 Query: 591 SIEGISKKIACKIYN 605 +++GI+ K +I Sbjct: 578 TVQGITAKDIQRIQE 592 >gi|255311626|ref|ZP_05354196.1| excinuclease ABC subunit C [Chlamydia trachomatis 6276] gi|255317927|ref|ZP_05359173.1| excinuclease ABC subunit C [Chlamydia trachomatis 6276s] Length = 598 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 179/615 (29%), Positives = 290/615 (47%), Gaps = 42/615 (6%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHR-ITHMISQINNIRFT 61 + + PGVY M D G VLYVGKA NL+ R+ SY+ + + I ++ + +I Sbjct: 8 LKDVSSSPGVYLMKDSQGTVLYVGKAKNLRNRLSSYLQKKGDSRKRIPFLMKKTTDIDTI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS----TI 117 V E EA+LLE N+IK+ +PR+N+LL+DDK+F + ++ +H P + R + Sbjct: 68 VVSNETEAILLENNLIKKYQPRYNVLLKDDKTFFCLSVSLEHPWPRIEAIRTRALSPGKK 127 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 + FGP+ S +A + + F LR+C+D F R RPC+L+++KRC PC G S Sbjct: 128 KQWLFGPYVSAEACYALLEVISLWFPLRTCSDREFSTRQRPCVLYEMKRCLAPCVGLCSQ 187 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 +Y E + +A FL G + + + + +A+ ++ +E A L + Sbjct: 188 TEYQETLDKAVLFLKGDVRSTISNLEKAIEKASQEQKFEYAAALYRTLTLIRQTMAKQHV 247 Query: 238 ---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 +D LY +LA + + G+ G F +++ +A S+ L+ + Sbjct: 248 EKFQAYDIDVLGLYRKGSLAIVSVLSVYSGKLLGARYFIFPENAQEDSALFSSFILQYYA 307 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 + P+ I + + L + KI PK ++++ A NA Sbjct: 308 ENPRIPKEIFVPVSLDSPELP---YLLNTAEPPKIRCPKTEYGKELLALAHKNAAEQAKP 364 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 S ++ F L P RIE YDN+H+ G VG +V F QY Sbjct: 365 F----NSITPPYEELQHFFNLSQYPYRIECYDNAHLQGEHNVGVCIVFENGLFSPKQYCT 420 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F++ DD A VL RRF L P+++++DGG+ Sbjct: 421 FSI----TSHGDDLAAFEEVLTRRFRSLTTE-----------------LPNLIVIDGGRN 459 Query: 475 QLSAAQGVLKKLNVENRITIISIAK---GPKRSAGMEKFFVKK-GEALVLNMRDPILYFI 530 Q AQ +L++LN+ IT+++IAK +S EK F + + ++L+ IL F Sbjct: 460 QFKRAQRILEELNLTG-ITVVTIAKESGNHSKSLRQEKLFCETFPQGILLHPTSAILQFF 518 Query: 531 QRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 Q LRDEAHRFAI +RK+ KA + +I GIG ++ + LLQ F + K + +S E L Sbjct: 519 QLLRDEAHRFAIQHYRKKHAKAVLTT-KKIPGIGEVKTKRLLQKFKSWKRVFIASEEELK 577 Query: 591 SIEGISKKIACKIYN 605 +++GI+ K +I Sbjct: 578 TVQGITAKDIQRIQE 592 >gi|320450931|ref|YP_004203027.1| excinuclease ABC subunit C [Thermus scotoductus SA-01] gi|320151100|gb|ADW22478.1| excinuclease ABC, subunit C [Thermus scotoductus SA-01] Length = 592 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 171/598 (28%), Positives = 274/598 (45%), Gaps = 38/598 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PGVY VLYVGKA NL+ R++SY + + + + + F T Sbjct: 12 LPEAPGVYLWK-QGEEVLYVGKAKNLRARVRSYF---HQEGKAARIAQEATALDFIATRD 67 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 EVEALLLEAN+IK +P +N+LL+DDK +P++ +T + P L R Y+GPF Sbjct: 68 EVEALLLEANLIKAHRPPYNVLLKDDKHYPFLKLT-QEPFPTLLVVRRVEEDGAKYYGPF 126 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 A+ + + R F LR + + R PCL + + RC PC G + Y E V Sbjct: 127 PEASALRRIKTLIDRLFPLRKNSGYPMKKRRYPCLNYSMGRCLAPCVGLADPKAYQEVVR 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA----ALSHIQNHNDSIYNR 241 + + L G L ++ M +A + ++E A RD++ S Q D Sbjct: 187 QVEAVLEGKVDGLLRELEAKMREAAQRLEFERAAEIRDQMEALRAFFSTAQQAFDPEMGD 246 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 +D L LA +Q G+ G + ++ + S + ++ + P P Sbjct: 247 LDFLGLAQAGPLAVVQLYQVRSGRILGRISRVVEKEEASPEEILWAFLRDYYLEASPLPP 306 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 ILL E+ L ++ G +V++ VPK+GEK +++E A NA + +L Sbjct: 307 LILLPFPLEDLESLAALLHRRAGRRVELRVPKKGEKVRLLELAEKNARLALETELKQRER 366 Query: 362 H--QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 LK + L P R+E YD SH+ G + V M V+ + +YR+ L Sbjct: 367 RGDHPALKALQEILGLSQRPYRLEGYDVSHLQGEARVFSMAVLEGGRPKRAEYRRMRLK- 425 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 DD A M + RRF+ +K+ + +DGG GQ+ AA Sbjct: 426 ---AGNDDYAAMEEGVYRRFTGSLKDLPLPDLLL---------------IDGGLGQVRAA 467 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 L++ + + ++ +AK E ++G + L + P L + LRDEAH+ Sbjct: 468 ARALERAGLS--LPLVGLAKKE------EVLITQEGREIRLPLTHPALQLLIHLRDEAHQ 519 Query: 540 FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 + H+KRR + + L I GIG R+RLLL+ +G +K + + E LA + G+++ Sbjct: 520 NGLRYHQKRRSQELFQVLKGIPGIGEARRRLLLERYGGIKALKEAPLEELARLPGMNR 577 >gi|325970606|ref|YP_004246797.1| UvrABC system protein C [Spirochaeta sp. Buddy] gi|324025844|gb|ADY12603.1| UvrABC system protein C [Spirochaeta sp. Buddy] Length = 617 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 168/610 (27%), Positives = 293/610 (48%), Gaps = 31/610 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 ++++P GVY M D ++YVGKA +L+KR+ SY +N + + ++S+I I Sbjct: 33 QAKELPHQSGVYLMKDSKDTIIYVGKAKDLRKRVTSYFLANR-SPKTAALVSKIARIDHI 91 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 +T E EAL+LE N+IK+ PR+NI L+D KS+P I IT+ P ++K R +Y Sbjct: 92 ITGNEYEALVLENNLIKKYSPRYNISLKDGKSYPIIRITN-EPFPKVFKTRRFIDDGSTY 150 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GP+ +E ++ + + F LR C + R +PCL + I C GPC G ++ E+Y Sbjct: 151 YGPYPDAGKLELYLDLIAKLFPLRRCGTP-LKKRDKPCLYYHIGLCLGPCAGLVTVEEYN 209 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 + + K L G L ++ M A+ ++E A+I RD++AA+ I++ Sbjct: 210 KSITAVKNLLEGKTDALIARLEEEMQHASKALNFEEAVIKRDQIAAIKAIESGQQVQDFS 269 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D ++ L I GQ G + +T + T + L FL Q+Y D Sbjct: 270 QESRDYAAIEMRYPLCTISLMQMRSGQLIGRALYRAETFGDET--ETLLNFLVQYYADGL 327 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 L + +L+ FF+Q G ++++++P G+ +I+ A NA R ++L + Sbjct: 328 KLPQFLYVSHEIDVNLIRRYFFEQLGGRLEVSLPLDGKHFRILRMARENAIRDVEKRLKS 387 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + L D + L P IE +D + + G V ++ + K YR++N+ Sbjct: 388 RDN-TKALDDLAEVLGLTSPPSLIEGFDIAQLAGKYTVASLISFRDGNPDKPNYRRYNIK 446 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 DD +R + RR+++++ PD++I+DGG GQ++A Sbjct: 447 S-LEGKIDDYESIREAVARRYTKILNEN--------------LERPDLLIIDGGLGQVNA 491 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ VL L + I II +AK + F + + L L L + +RDE H Sbjct: 492 ARQVLDDLGM-FEIPIIGLAKENET-----IVFDDERKDLQLPEDHEALRLVMAVRDECH 545 Query: 539 RFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFA + ++ R K A++ L+ + GIG R L++ +G+++ + + E LA + Sbjct: 546 RFATSANQAARSKEASFRVLESVQGIGKKRSEQLMKQYGSLEALLAKTAEELAKETSLPL 605 Query: 598 KIACKIYNHF 607 +A ++ Sbjct: 606 PVAQRLLKQL 615 >gi|297171241|gb|ADI22248.1| nuclease subunit of the excinuclease complex [uncultured Gemmatimonadales bacterium HF0200_36I24] Length = 551 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 181/572 (31%), Positives = 276/572 (48%), Gaps = 37/572 (6%) Query: 51 MISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYK 110 MI QI + V +E E+L+LEAN+IK KPRFNI LRDDK +PYI +T + P ++ Sbjct: 1 MIRQIVEVDTIVVGSETESLILEANLIKEHKPRFNIQLRDDKRYPYIKVTIQEAFPRVFV 60 Query: 111 HRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCA-DSVFRHRTRPCLLFQIKRCSG 169 R YFGP+ SV + + ++R + +RSC D RPCL + I RC Sbjct: 61 TRRLEDDGSQYFGPYTSVGLMRDALEVVKRLYTVRSCRYDLPKESPERPCLDYHIGRCLA 120 Query: 170 PCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALS 229 PC G Y ++E K L G +++++ + M+ A+ ++E A RD + L Sbjct: 121 PCVGYQDQNSYGIMINEILKVLGGETEYVRDRVQKQMSDASRDLEFERAAHFRDIITVLD 180 Query: 230 HIQNHNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQIL 286 + + N D + + ++ G G T SE + +L Sbjct: 181 GMAHQQLVEDLRGNDYDLIGIARDGDIGVGVVMKIRRGVLLGRDTIRFSEISECNDGSLL 240 Query: 287 SYFLRQFYT------DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKI 340 ++Y P+ IL+ + E +L+ F + GYKV I +PK+G KR++ Sbjct: 241 DMLTSRYYLGGSKQPHSDFPKEILVPVDFENKDILKEVLFYKDGYKVDIRIPKRGIKRRL 300 Query: 341 IEQALINAHRSHTQKLSTEISHQMI----LKDFTKKFALPHIPKRIEIYDNSHIMGCSAV 396 E A NA + +L+T L D + K L +P+ I +D SHI G V Sbjct: 301 CELATDNARHALEDRLTTTRQFHDRADEVLYDLSDKLQLKVVPRFIACFDVSHIQGSETV 360 Query: 397 GCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQ 456 G VV K++YR+ + + DD M V+ R FS ++N Sbjct: 361 GSAVVFENAEPKKSEYRRMRIRGD--WGNDDYRSMAEVVSRYFSYRLENG---------- 408 Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE 516 PD+V++DGGKGQL +A L +L V + + +IS+AK + F + E Sbjct: 409 ----LPLPDLVLIDGGKGQLRSAHDSLNELGVTD-MPMISLAKREEL-----VFRLGTRE 458 Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSF 575 L RD L+ +QR+RDEAHRFA+T +RK RR + S L EI GIGP +++LLL F Sbjct: 459 PLRFKRRDNALHVLQRIRDEAHRFAVTYNRKLRRNRTVSSDLSEIPGIGPEKQKLLLLRF 518 Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHF 607 G+V+ I ++ E +A I G+ +A +I + Sbjct: 519 GSVRAIKSANVEEIAEISGLGLVLADRIITYL 550 >gi|167769119|ref|ZP_02441172.1| hypothetical protein ANACOL_00442 [Anaerotruncus colihominis DSM 17241] gi|167668759|gb|EDS12889.1| hypothetical protein ANACOL_00442 [Anaerotruncus colihominis DSM 17241] Length = 615 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 168/617 (27%), Positives = 291/617 (47%), Gaps = 23/617 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + ++P PGVY M + +G ++Y+GKA L+ R+ SY + H ++ M+S + + Sbjct: 15 KARRLPLLPGVYIMKNKSGEIIYIGKAKALKNRVSSYFRAVEKHHPKVYKMVSHVYDFDS 74 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E EAL+LE ++IK+ P++NILL+DDK + YI + + + Sbjct: 75 IVTDSEFEALVLECSLIKQHTPKYNILLKDDKGYSYIKVAPRQ-YGRITHVFQKEDDGAQ 133 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSE 178 Y GP+ S V +T++ R F L +C + + RPCL + IKRC G C G+IS E Sbjct: 134 YIGPYISSFVVNETVDEANRVFMLPTCGKKFPQEFGKARPCLNYHIKRCMGVCMGKISPE 193 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y E + +A ++ GG+ E++ MN +E A RDR+ A++ I + Sbjct: 194 AYDEILEQALDYIRGGSARAVERLTEQMNLCAENMQFEKAAQLRDRIRAVTRISESQKVV 253 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + D +L +++ C F + F + + A++ Sbjct: 254 FAKVANQDIIALARSESETCAVVLKFRGERLVDKQDFLIGATDDIDAARLEFLLRYYTTR 313 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P+ I L + + L +Q GYKV+I +P++GE+ +++E A NA +Q Sbjct: 314 RGDLPKKIQLDGDVADVQLAARLLSEQAGYKVEIHIPQRGEQLRLVEMARKNAVERLSQT 373 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 + L + + L P RIE YD S+I + VG MVV ++ YRKF Sbjct: 374 VRRAGREVGALDELARLLGLERPPARIEAYDISNIGSDTVVGGMVVFENGRPLRRCYRKF 433 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 + V DD A M ++ RRF+ +E + +F PD+++LDGG+G Sbjct: 434 TIKT--VAGTDDYASMAEMIGRRFTHYKNDE--------TPDEAFGRLPDLILLDGGRGH 483 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 + A VL+ + + + + + K K + G + + + ++D Sbjct: 484 VGAIAPVLESMGIA--VPLFGMVKDDKHRTRA---IAQSGGEIAVAPHRSAFTLVSTIQD 538 Query: 536 EAHRFAITTHRKRRKKAAYS-PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E HR++I+ R R +K+++ L + GIG R + + F T+K I + + LA+++G Sbjct: 539 EVHRYSISFSRARHQKSSFELSLTKCEGIGQKRAAEIFRHFKTIKAIRAADVDALAAVKG 598 Query: 595 ISKKIACKIYNHFHKNT 611 +S+ A K+Y H + Sbjct: 599 VSRPAAEKLYEFLHADD 615 >gi|28572624|ref|NP_789404.1| excinuclease ABC subunit C [Tropheryma whipplei TW08/27] gi|81630094|sp|Q83NI9|UVRC_TROW8 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|28410756|emb|CAD67142.1| excinuclease ABC subunit C [Tropheryma whipplei TW08/27] Length = 607 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 167/614 (27%), Positives = 306/614 (49%), Gaps = 35/614 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P PGVY+ D GR+LYVGKA NL+ R+ SY + RI++M+S + +T Sbjct: 8 EIPCKPGVYRFEDENGRILYVGKAKNLRNRLGSYFTNARRGRRISYMLSISKKVGWTCVA 67 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 ++EAL LE + IK P N+ L+DDK++P++ +T ++P L R ++FGP Sbjct: 68 DDIEALRLEYSWIKEFAPPCNVKLKDDKAYPFLAVTIGEQVPRLLITRRKIQ-YATHFGP 126 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKYM 181 + V + +T++ L + F +R+C+ + ++ PC QI +C GPC+ + + +Y Sbjct: 127 YPKVFHLRETVSLLHKIFQIRTCSPTNYKRAIASGMPCFEGQINKCFGPCSLKTTHLQYQ 186 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + + FL G + +L E + + M +A+ ++YE A I RD++ A + + + + + Sbjct: 187 KRIKNLMAFLEGQSSSLLESLKKKMLKASKNKEYEEAAILRDKIQAAQTVLSRSAVLLDE 246 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D ++ + ++A +Q G+ + ++ + + + +++LS + Q Y Sbjct: 247 TVSADFIAVVSDNSIASVQCFRVIAGRIKSVYSWHFEQQEDQSASELLSQSIIQVYDKLS 306 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYK---VKITVPKQGEKRKIIEQALINA----HRS 351 P+ I+L ++ S L + + ++I ++R+++E NA R Sbjct: 307 LPKRIVLFDKPSYLSALSAHLNDKNIDRSLEIEIVYHPNEQERRLLETVKDNALSELERH 366 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 ++ S L + K L +P RIE +D SH+ G + G MVV K+ Sbjct: 367 RLRRSSDYTERHRSLFELQKYLNLNSLPVRIECFDISHLSGTNTSGSMVVFENGEPKKSA 426 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YR FN+H + +D A M ++ RR L + P +P ++I+DG Sbjct: 427 YRHFNIH---IDQNNDTASMFSLICRRLRSL-----------ESVAQDSPDYPHLMIIDG 472 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GK QLSAA G L+++ + +I + +++K + E + +L+L L+ +Q Sbjct: 473 GKPQLSAAVGALQEVGL--KIPVFALSKRLE-----ELWSPGVKTSLILPPNSESLFLLQ 525 Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 ++RDE+HRFA+ +RR+ S L I G+G + LL+ F + I ++S E +++ Sbjct: 526 KIRDESHRFALKQQTRRREAYLTSELFRIPGLGKQKVMQLLRRFSSFAEIRQASIEDISA 585 Query: 592 IEGISKKIACKIYN 605 + G K A KI Sbjct: 586 LPGFGVKTAEKIKE 599 >gi|28493264|ref|NP_787425.1| excinuclease ABC subunit C [Tropheryma whipplei str. Twist] gi|81438052|sp|Q83MY6|UVRC_TROWT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|28476305|gb|AAO44394.1| excinuclease ABC subunit C [Tropheryma whipplei str. Twist] Length = 607 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 167/614 (27%), Positives = 307/614 (50%), Gaps = 35/614 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P PGVY+ D GR+LYVGKA NL+ R+ SY + RI++M+S + +T Sbjct: 8 EIPCKPGVYRFEDENGRILYVGKAKNLRNRLGSYFTNARRGRRISYMLSISKKVGWTCVA 67 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 ++EAL LE + IK P N+ L+DDK++P++ +T ++P L R ++FGP Sbjct: 68 DDIEALRLEYSWIKEFAPPCNVKLKDDKAYPFLAVTIGEQVPRLLITRRKIQ-YATHFGP 126 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKYM 181 + V + +T++ L + F +R+C+ + ++ PC QI +C GPC+ + + +Y Sbjct: 127 YPKVFHLRETVSLLHKIFQIRTCSPTNYKRAIASGMPCFEGQINKCFGPCSLKTTHLQYQ 186 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + + FL G + +L E + + M +A+ ++YE A I RD++ A + + + + + Sbjct: 187 KRIKNLMAFLEGQSSSLLESLKKKMLKASKNKEYEEAAILRDKIQAAQTVLSRSAVLLDE 246 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D ++ + ++A +Q G+ + ++ + + + +++LS + Q Y Sbjct: 247 TVSADFIAVVSDNSIASVQCFRVIAGRIKSVYSWHFEQQEDQSASELLSQSIIQVYDKLS 306 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYK---VKITVPKQGEKRKIIEQALINA----HRS 351 P+ I+L ++ S L + + ++I ++R+++E NA R Sbjct: 307 LPKRIVLFDKPSYLSALSAHLNDKNIDRSLEIEIVYHPNEQERRLLETVKDNALSELERH 366 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 ++ S L + K L +P RIE +D SH++G + G MVV K+ Sbjct: 367 RLRRSSDYTERHRSLFELQKYLNLNSLPVRIECFDISHLLGTNTSGSMVVFENGEPKKSA 426 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YR FN+H + +D A M ++ RR L + P +P ++I+DG Sbjct: 427 YRHFNIH---IDQNNDTASMFSLICRRLRSL-----------ESVAQDSPDYPHLMIIDG 472 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GK QLSAA G L+++ + +I + +++K + E + +L+L L+ +Q Sbjct: 473 GKPQLSAAVGALQEVGL--KIPVFALSKRLE-----ELWSPGVKTSLILPPNSESLFLLQ 525 Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 ++RDE+HRFA+ +RR+ S L I G+G + LL+ F + I ++S E +++ Sbjct: 526 KIRDESHRFALKQQTRRREAYLTSELFRIPGLGKQKVMQLLRRFSSFAEIRQASIEDISA 585 Query: 592 IEGISKKIACKIYN 605 + G K A KI Sbjct: 586 LPGFGVKTAEKIKE 599 >gi|253582249|ref|ZP_04859472.1| excision endonuclease subunit UvrC [Fusobacterium varium ATCC 27725] gi|251835788|gb|EES64326.1| excision endonuclease subunit UvrC [Fusobacterium varium ATCC 27725] Length = 596 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 184/618 (29%), Positives = 299/618 (48%), Gaps = 39/618 (6%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + +PE PGVY M G+V+YVGKA NL+ R+ SY + + + ++ I +I F Sbjct: 8 IKKIDIPENPGVYLMK-KNGKVIYVGKAKNLKNRVSSYFNREHENEKTKELVKNIEDIEF 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYK---HRDSSTI 117 + +E++A +LE N+IK+ P++NI L+D+K++PYI I+ + P + R T Sbjct: 67 IMCNSEIDAFVLENNLIKKYSPKYNIALKDEKTYPYIKIS-RETFPNIKMIRTTRALDTK 125 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 G YFGP+ ++ + F +R C + + TRPCL + +K C GPCT + Sbjct: 126 TGMYFGPYPQGG--WNLKKNIIKIFKIRDCNRDMNKVYTRPCLKYFMKMCPGPCTYKNIK 183 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E+Y E V AK+ L G N+ E++ + M +A+ +E AI++R+++ + N+ + Sbjct: 184 EEYNELVEGAKQLLKGQGRNVIEELKKKMEKASEDMKFEEAILYREQIKEIETTVNNQIT 243 Query: 238 IYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 Y D F++ N I G+ G + + + IL + FY Sbjct: 244 EYGKELDEDIFNIKEENNRVFICVLNVRDGKILGKISTNIDLK-DKIYENILEVVVMAFY 302 Query: 295 TDKPCPENILLSEEAEETS--LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 P P+NI+ S + E S +LE + + +++++E +N R Sbjct: 303 NKHPIPQNIVFSSKYENESNRILEALKKDKNKKIEFFFPKIKSRRKELLEMGELNLIRDV 362 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + L L P++IE +D S+I G AV M V E K Y Sbjct: 363 ENYYRKKSVVEEGLYKIYTTLELKRYPRKIECFDISNIQGKDAVASMSVSVEGKASKQDY 422 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472 RKF + D DD AMMR V+ RR+ +L +NE +PDV+++DGG Sbjct: 423 RKFKITCKDTP--DDFAMMREVITRRYGKLPENE----------------FPDVILIDGG 464 Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532 GQ++AA V K+L + ++S+AK + E + + + + L QR Sbjct: 465 LGQINAAGEVFKELGKDGISDLLSLAKRDE-----EVYKYGENVPYIFSKDQEALKIFQR 519 Query: 533 LRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDEAHRF IT HRK R K S LDE+ G+G RK +LL+ FG+V I++ +++ Sbjct: 520 VRDEAHRFGITYHRKLRSKRVLSSELDEVEGVGEKRKAVLLKEFGSVTKIAKEDVNSISR 579 Query: 592 IEGISKKIACKIYNHFHK 609 + + +A I K Sbjct: 580 F--VPRNVAENILEKLRK 595 >gi|42527978|ref|NP_973076.1| excinuclease ABC, C subunit [Treponema denticola ATCC 35405] gi|81411542|sp|Q73JT1|UVRC_TREDE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|41819023|gb|AAS12995.1| excinuclease ABC, C subunit [Treponema denticola ATCC 35405] Length = 652 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 178/656 (27%), Positives = 298/656 (45%), Gaps = 85/656 (12%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 P+ GVY D AG V+YVGKA +L+ R+ SY SN + ++S+ +I + T E Sbjct: 18 PKTSGVYLWKDKAGTVIYVGKAKSLKNRLSSYFTSNR-DIKTRILVSRAESIEYIQTENE 76 Query: 67 VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126 EALLLE +IK+ KPR+NI L+D K++P + +T++ P +Y+ R+ YFGPF Sbjct: 77 YEALLLENTLIKKHKPRYNINLKDGKTYPVLKLTNEE-FPKVYRTRNIKNDGSKYFGPFP 135 Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186 +V AV+ + ++ + LR C + R PCL F I RC PC G+IS+E+Y + + E Sbjct: 136 NVSAVDMFLTLIKHNYTLRQCK--QLKKRETPCLYFHIGRCKAPCCGKISAEEYGKDIEE 193 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH---NDSIYNRMD 243 L G ++ + M +A K+++E A RD + A+ ++ D D Sbjct: 194 ITLLLEGEMEDVSGTLKEKMKEAAEKKEFEKAARLRDGIQAVYALRGQNIVQDMDPESRD 253 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-KPCPEN 302 + + I G+ G ++ S +ILS F+ +YT P Sbjct: 254 YIAWAFEGAMVSIAVLKMRNGRLVGR--DLYRSHSLKEEGEILSEFISAYYTSANEVPPK 311 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPK----------------------------- 333 I + + AE +L+E ++ K +I++ Sbjct: 312 IFIPQAAEGNALIEKWLNEELHAKTRISIIPLEKESLAAEERSAADSLTEIEEAASKTIG 371 Query: 334 ----------------------QGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTK 371 + ++ A NA ++L E ++D K Sbjct: 372 YAVKEPAPLSAQEEKLNLSPAEIKHHKAALKMARFNAKEDAMRRLR-EQGDFAAVEDLQK 430 Query: 372 KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMM 431 + LP +P+RIE +D +H+ G V ++ E K YR F L D DD A M Sbjct: 431 RLNLPCLPQRIEGFDIAHLGGTFTVAALISFKEGNPDKKNYRIFRLKNTDGV-IDDYASM 489 Query: 432 RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENR 491 R V+ RR+++L+ +L PD++++DGG GQ++AA ++ L++ Sbjct: 490 REVIARRYTRLLNEGADL--------------PDLILIDGGIGQVNAASKIVDALDLG-- 533 Query: 492 ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRK-RRK 550 I +I +A E +F + ++L R L +QR+RDEAHRF+ T + K RR Sbjct: 534 IPVIGLA-----EKNEEVYFPHNSKPVILPRRSDALRLLQRIRDEAHRFSNTRNNKLRRA 588 Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + + + IG R +LL++FG+ + + + + L+ IS K A ++ + Sbjct: 589 NKLKTEFENLPHIGKKRAHVLLKAFGSTENLKTLTAQALSETAKISLKQAEEVLDA 644 >gi|325474800|gb|EGC77986.1| UvrABC system protein C [Treponema denticola F0402] Length = 652 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 180/656 (27%), Positives = 298/656 (45%), Gaps = 85/656 (12%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 P+ GVY D AG V+YVGKA +L+ R+ SY SN + ++S+ +I + T E Sbjct: 18 PKTSGVYLWKDKAGTVIYVGKAKSLKNRLSSYFTSNR-DIKTRILVSRAESIEYIQTENE 76 Query: 67 VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126 EALLLE +IK+ KPR+NI L+D K++P + +T + P +Y+ R+ YFGPF Sbjct: 77 YEALLLENTLIKKHKPRYNINLKDGKTYPVLKLT-DEEFPKVYRTRNIKNDGSKYFGPFP 135 Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186 +V AV+ + ++ + LR C + R PCL F I RC PC G+IS+E+Y + + E Sbjct: 136 NVSAVDMFLALIKHNYTLRQCKR--LKKRESPCLYFHIGRCKAPCCGKISAEEYGKDIEE 193 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH---NDSIYNRMD 243 L G ++ + M +A K+++E A RD + A+ ++ D D Sbjct: 194 ITLLLEGEMEDVSGTLKEKMKEAAEKKEFEKAARLRDGIQAVYALRGQNIVQDMDPESRD 253 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-KPCPEN 302 + + I G+ G ++ S +ILS F+ +YT P Sbjct: 254 YIAWAFEGAMVSIAVLKMRNGRLVGR--DLYRSHSLKEEGEILSEFISAYYTSANEVPPK 311 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPK----------------------------- 333 I + + AE +L+E ++ K +I++ Sbjct: 312 IFIPQAAEGNALIEKWLNEELHAKTRISIIPLEKESLAAEETSTTDSLTEIEEAASKTIG 371 Query: 334 ----------------------QGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTK 371 + ++ A NA ++L E ++D K Sbjct: 372 YTVQEPAPSAAQEEKLNLSPAEIKHHKAALKMARFNAKEDAMRRLR-EQGDFAAVEDLQK 430 Query: 372 KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMM 431 + LP +P+RIE +D +H+ G V ++ E K YR F L D DD A M Sbjct: 431 RLNLPCLPQRIEGFDIAHLGGTFTVAALISFKEGNPDKKNYRIFRLKNTDGV-IDDYASM 489 Query: 432 RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENR 491 R V+ RR+++L+ +L PD++++DGG GQ++AA ++ L++ Sbjct: 490 REVIARRYTRLLNEGADL--------------PDLILIDGGIGQVNAASKIVNALDLG-- 533 Query: 492 ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRK-RRK 550 I +I +A E +F E ++L R L +QR+RDEAHRF+ T + K RR Sbjct: 534 IPVIGLA-----EKNEEVYFPHNSEPVILPRRSDALRLLQRIRDEAHRFSNTRNNKLRRA 588 Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + + + IG R +LL++FG + + ++ +TL+ IS K A ++ + Sbjct: 589 NKLKTEFENLPHIGKKRAHVLLKAFGNTENLKTTTAQTLSETAKISLKQAEEVLDA 644 >gi|319779639|ref|YP_004130552.1| Excinuclease ABC subunit C [Taylorella equigenitalis MCE9] gi|317109663|gb|ADU92409.1| Excinuclease ABC subunit C [Taylorella equigenitalis MCE9] Length = 548 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 194/567 (34%), Positives = 295/567 (52%), Gaps = 29/567 (5%) Query: 52 ISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKH 111 ++++ +TVT +E EAL+LE N+IK L PR+NIL RDDK++P++ + H+ P + + Sbjct: 1 MAKVVRTEYTVTNSESEALILENNLIKNLHPRYNILFRDDKTYPFLKFS-AHQFPQISFY 59 Query: 112 RDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPC 171 R S+ G +FGP+ + AV +TI LQR F LR+CADSVF++R+RPC+ FQIKRCSGPC Sbjct: 60 RGSTNKPGKFFGPYPNGYAVGQTIEVLQRVFRLRTCADSVFQNRSRPCMQFQIKRCSGPC 119 Query: 172 TGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHI 231 TG IS E+Y V A FL G ++ + I M A+ +YE A I+RD++ AL I Sbjct: 120 TGFISKEEYESDVKNAVDFLDGKTPDVLKNIETKMLTASEVMNYELAAIYRDQIKALGTI 179 Query: 232 QNHNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSY 288 N + D ++ CI G++ G + + IL Sbjct: 180 MNSQSMEVSPKINSDIIAIAQLDGKTCINLAMVRKGRHLGDKSIIPTHVHGDEASIILEA 239 Query: 289 FLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA 348 F+ Y + PE ++LS E + S++E+ K + KV I ++ +E A+ NA Sbjct: 240 FISSHYLNHEIPETLVLSHELHDRSVIELFESKYH-KKVHIVARANSLQKTWLELAIKNA 298 Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPK-----RIEIYDNSHIMGCSAVGCMVVVG 403 + ++L+ + F + L IE +D SH G + VV Sbjct: 299 ELALARELNESTKAEKRTLAFAQVLGLSTDLDSLNELSIECFDISHTSGEATQASCVVYQ 358 Query: 404 ENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSW 463 + ++YR++N+ N + DD A M VL RR+S +K+ Sbjct: 359 YHDMQSSRYRRYNI--NGITEGDDYAAMEQVLTRRYSNFLKDG--------------IDL 402 Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNM 522 PD+V++DGGKGQ+ A+ V ++L ++ I+ +AKG R G+E G L L + Sbjct: 403 PDIVLIDGGKGQIGVAKRVFEELGLDLS-KIVGVAKGEGRKVGLETLHFVDGRAPLELGV 461 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMI 581 + L I +RDEAHRFAIT R RR K S L++I+G+GP R++ LL FG + Sbjct: 462 QSSALMLIASIRDEAHRFAITGMRNRRAKQRNVSRLEDIDGVGPKRRQKLLARFGGFTEV 521 Query: 582 SRSSPETLASIEGISKKIACKIYNHFH 608 +S L S+EGIS+++A KIY Sbjct: 522 CNASIADLQSVEGISREVAEKIYYALR 548 >gi|300871639|ref|YP_003786512.1| excinuclease ABC subunit C [Brachyspira pilosicoli 95/1000] gi|300689340|gb|ADK32011.1| excinuclease ABC, C subunit [Brachyspira pilosicoli 95/1000] Length = 610 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 178/625 (28%), Positives = 301/625 (48%), Gaps = 43/625 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 +++P GVY M D ++Y+GKA +L+KR+ SY NN + T ++ I +I + Sbjct: 12 KLKRLPTKSGVYFMKDKDANIIYIGKAKSLKKRVSSYFIGNNKDAKTTALVEHIRDIDYI 71 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG-- 119 VT EVEAL+LEA MI++ KP +NILL+D KSFP+I IT++H P + K R+ Sbjct: 72 VTKNEVEALILEAEMIRKHKPHYNILLKDQKSFPFIAITNEH-FPRVIKARNVIDKDNAK 130 Query: 120 ---SYFGPFASVDAVEKTINSLQRTFFLRSCA-DSVFRHRTRPCLLFQIKRCSGPCTGEI 175 Y+GP+ + + E + + F LR C D + + RPCL + I +C+ PC I Sbjct: 131 KYKKYYGPYVAAERAENIVKFIIDNFKLRRCKYDFPLKRKIRPCLYYHIGKCTAPCADLI 190 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 ++Y + + A L G L K+ ++M K ++E A RD++ L I Sbjct: 191 DEKEYDKDIDNAIMLLEGNVDELVAKMKQDMFVFAEKLEFERAKDLRDKIDLLKSITVEQ 250 Query: 236 DSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST------NAQIL 286 + +D Y I G+ TF ++ + ++++ Sbjct: 251 SIYVPESDDIDIIGAYGENGDYTIVVLSVKGGKLVDRKTFSMQDKNIDEYSNKSRYSEVI 310 Query: 287 SYFLRQFYTDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQAL 345 S F+ Q+YT P +I ++ +++ + G V+I + + +I A Sbjct: 311 SAFITQYYTHNNLIPASISTDFVIKDFDIVKDYLKEISGRDVEIKLDNTK--KGLISIAN 368 Query: 346 INAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405 NA ++ + L + F L P IE +D +HI G + MV Sbjct: 369 ENARHLFKERALIRE-VPIGLTRLQEIFKLKKAPSIIESFDIAHIQGSYTMAGMVRFVNG 427 Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465 YR FN+ V DD A ++ + RR+ +L + ++PD Sbjct: 428 VSDNKNYRIFNMKT--VTGIDDFASIKEAVYRRYKRLKEEN--------------STFPD 471 Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525 ++++DGG+GQL++A L++L+++N+ I+++AK + E + + + LN +P Sbjct: 472 LILIDGGRGQLNSAIEALRELDIKNQ-PIMALAKKFE-----EIYLPNRETPVQLNDNEP 525 Query: 526 ILYFIQRLRDEAHRFAITTH-RKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 F+Q++RDE HR+ T+H RKR ++ S L++I G+G L F + I + Sbjct: 526 ARLFLQKVRDETHRWVNTSHGRKRSREMVKSELEKIEGLGKKGIEKLYSHFINIDNIKNA 585 Query: 585 SPETLASIEGISKKIACKIYNHFHK 609 S + +A+I GIS K+A IYN+FHK Sbjct: 586 SLDNIANIPGISYKVANNIYNYFHK 610 >gi|317486174|ref|ZP_07945013.1| excinuclease ABC [Bilophila wadsworthia 3_1_6] gi|316922565|gb|EFV43812.1| excinuclease ABC [Bilophila wadsworthia 3_1_6] Length = 671 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 192/682 (28%), Positives = 280/682 (41%), Gaps = 92/682 (13%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 +S +P PG+Y D GR++YVGKA NL+KRI SY ++ T + MI ++ Sbjct: 5 ASSTLPTTPGIYIYKDAQGRIIYVGKARNLRKRILSYFRDASALTPKTVAMIGHAASLET 64 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE EALLLEA++IK+ +P +NI+LRDDK + I P L R + Sbjct: 65 LSTTTEKEALLLEASLIKKHRPHYNIVLRDDKQYVLFRIAKDAPYPRLEVVRQARRDNAR 124 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGPF S A +T ++ R F LR C D F++R RPCL I +C PCT + E+Y Sbjct: 125 YFGPFTSGQAARETWKTIHRVFPLRRCVDRAFKNRVRPCLYHHIGQCLAPCTENVPVEEY 184 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 +H + LSG + L + + M A+ +YE A + RD++ A+ + Sbjct: 185 ASLIHRVELLLSGRSRELLDTLRHAMADASEAMNYEQAAVFRDQIKAIERTVERQSVVLP 244 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-D 296 MD + K + F G+ TFF + ++L FL QFY Sbjct: 245 EGGNMDVAGVAPAKGGLALGLLFVREGRLVDGRTFFWPDLELAEGPELLWSFLGQFYGPQ 304 Query: 297 KPCPENILLSE------------------------------------------------- 307 P I++ Sbjct: 305 TSIPPRIVVPWLPEDTVLPGMSGEQDAPDSASPVKDHIATLEGEAEPPHAAGTDSNGHAP 364 Query: 308 -EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK----LSTEISH 362 E E LE + G V+I P+ + ++++ A+ NA + K +S ++ Sbjct: 365 DEVESLEALEAALADARGGIVRIAKPRNAAEARLVDMAVSNAREAAVTKSEVPMSDRLAA 424 Query: 363 QMILKDFTKK-----FALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 L +RIE D SH G S MVV + K+ YR + L Sbjct: 425 AFALDKVQSALPGAVPMASRPIRRIECVDVSHTGGTSTRVGMVVFEDGQPQKSDYRTYAL 484 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 DD A + + RR S P W D+V++DGG+GQ+S Sbjct: 485 EGEAACNGDDYAALAEWMRRRL------------------ESGPPWADLVLIDGGRGQVS 526 Query: 478 AAQGVLKKLNVENRITIISIAK------GPKRSAGM---EKFFVKKGEALVLNMRDPILY 528 A Q ++++ N E + IAK R AG F + L L L Sbjct: 527 AVQRIVRESNAEGLFLLAGIAKARDDMGRADRRAGNVGDRIFLPGRSNPLPLRDGSAELL 586 Query: 529 FIQRLRDEAHRFAITTHRKRRKKAAYS-PLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 F+Q +RD AH F I HR+ R AA S L I G+G RLL F + I ++P Sbjct: 587 FLQHIRDTAHHFVIGRHRRARAGAALSAELLRIPGVGKATARLLWDHFKALDAIIAATPA 646 Query: 588 TLASIEGISKKIACKIYNHFHK 609 LA+I GI + A + + Sbjct: 647 QLAAIPGIGPRKAEALAGSLKR 668 >gi|257387133|ref|YP_003176906.1| excinuclease ABC subunit C [Halomicrobium mukohataei DSM 12286] gi|257169440|gb|ACV47199.1| excinuclease ABC, C subunit [Halomicrobium mukohataei DSM 12286] Length = 575 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 184/612 (30%), Positives = 285/612 (46%), Gaps = 52/612 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 +++ +P PGVY +A RVLYVGKA +L+ R++SY ++ + RI M+ + +I F+ Sbjct: 9 AADVLPREPGVYHF--VADRVLYVGKAVDLRDRVRSY--ADPRSARIAQMVERAESIEFS 64 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT TE +ALLLEAN+IKR +P +N+ L+DDKS+P + +T H +P + RD + Sbjct: 65 VTDTETQALLLEANLIKRHQPPYNVRLKDDKSYPLVQLT-DHPVPRIEVTRDPEE-GATV 122 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GPF VE + +L+ T+ LR C+D + R RPCL +++ C+ PCTGEIS+ Y Sbjct: 123 YGPFTDKGRVETVVKALRETYGLRGCSDHKYEGRDRPCLDYEMGLCTAPCTGEISAVDYA 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 E V ++F G L + + R M A+ +++E A RD+L A+ D Sbjct: 183 EDVESVERFFGGETGVLADPLRREMAAASEAQEFERAANCRDKLEAVEAFHGDADDAVQT 242 Query: 242 M------DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D A + GQ L ++LS F+ Q+Y Sbjct: 243 TRDERAVDVLGAVREGERATVARLHAADGQLIDRERHGLDAPDGDGVGEVLSAFITQYYA 302 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 ++ PE +L SE E G V + VP G + +++ AL NA R + Sbjct: 303 EREFPEAVLCSERP-----GEDVVEWLAGEGVDVRVPGAGREATLVDLALKNARRGGPAR 357 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 T RIE +D SH G + VG V + K YR+ Sbjct: 358 DDTAA---------LADALALDSADRIEGFDVSHAQGRAVVGSNVAFVDGDAAKRDYRRK 408 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 L DD A MR ++ R + I++ ++ +DGG GQ Sbjct: 409 KLTER----NDDYANMRELVRWRAKRAIEDRDDRPDPDLLL------------IDGGDGQ 452 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 L AA+ L + + +++AK E+ V + DP L+ QR+RD Sbjct: 453 LGAARDALADTGWD--VPAVALAKD-------EELVVTPTGTHDWDDDDPKLHLCQRVRD 503 Query: 536 EAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 EAHRFA+ H+ R + LDE+ G+GP ++ LL+ FG+V + +S E L ++EG+ Sbjct: 504 EAHRFAVQYHQTVRDEVTT-ALDEVPGVGPETRKRLLRRFGSVDNVRAASTEELLAVEGV 562 Query: 596 SKKIACKIYNHF 607 A I + Sbjct: 563 GAGTAETIRSRL 574 >gi|162447172|ref|YP_001620304.1| excinuclease ABC subunit C [Acholeplasma laidlawii PG-8A] gi|161985279|gb|ABX80928.1| excinuclease ABC, subunit C [Acholeplasma laidlawii PG-8A] Length = 577 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 181/607 (29%), Positives = 298/607 (49%), Gaps = 47/607 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG Y MLD +G V+YVGKA NL+ R+ SY H + +IS+I++ + VT + Sbjct: 8 LPTEPGCYMMLDQSGEVIYVGKAKNLKNRVSSYFRGA-HNAKTEKLISEISDFNYIVTNS 66 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS-YFGP 124 E E+L+LE N+IK+ P +NI L DDKS+PY+ IT+ K P L R + FGP Sbjct: 67 EQESLILEYNLIKKYAPLYNIRLIDDKSYPYLEITN-EKDPMLVVSRYIEVDKTKTLFGP 125 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + + + +T+ LQR + LR C ++PCL + + C GPC Y + Sbjct: 126 YPNSKSARETLKLLQRLYPLRRCNPVD----SKPCLYYHMGLCLGPC--AHEKVDYKPNI 179 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 +FL G + ++ M QA+ ++E A+ +RD + A+ N Sbjct: 180 ERITRFLKGDTKEVLNELEERMKQASEDLEFERAVEYRDMILAVKDTTEKQIMTLNDYKD 239 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D S +N++ IQ G+ T + ++ + +++ +Y P+ Sbjct: 240 RDFISFAYNEDDMAIQILMMRQGRILDTHKNVISYMTD--PYETFLTYIKNYYDKFLLPD 297 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 ++ ++ L Q +K K+ VPK G+K+K+++ A NA T + Sbjct: 298 ELVFDQQIPFKEL-------QMYFKNKVVVPKIGDKKKLVDLAHKNALEDLTHYYKLYRA 350 Query: 362 HQMILKDFTKK--FALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + L + + IE++DN+H+ G + + M+V + F + YRKF+L Sbjct: 351 KEEKLGEQIEALEQIFDKKISYIEVFDNAHLFGTAPISGMIVWKDYHFERKMYRKFHLKT 410 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 T DD M+ VL RR+ +L+ ++ L PD++ +DGGKGQ+SAA Sbjct: 411 T---TNDDYQAMKEVLYRRYQRLLVEKQKL--------------PDLICVDGGKGQVSAA 453 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 V++ N++ I I+ + K M + +V + E +L+ + P+ F+ +L +E HR Sbjct: 454 YEVIQLFNLD--IPILGLKKD---KYHMLEGYVIQNEVTILDKKSPLYQFLGQLSEEVHR 508 Query: 540 FAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 F IT H+K + +K S LD I G+GP RK+ LL SF ++ I +S E L SI G+ K Sbjct: 509 FTITFHQKTKNRKDYTSVLDNIPGLGPTRKKKLLASFKSIDDIKNASTEDLRSI-GLPDK 567 Query: 599 IACKIYN 605 + I Sbjct: 568 VIKSIKE 574 >gi|296125102|ref|YP_003632354.1| excinuclease ABC, C subunit [Brachyspira murdochii DSM 12563] gi|296016918|gb|ADG70155.1| excinuclease ABC, C subunit [Brachyspira murdochii DSM 12563] Length = 613 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 176/627 (28%), Positives = 300/627 (47%), Gaps = 44/627 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 +++P+ GVY M D ++Y+GKA +L+KR+ SY +++N + T ++ I +I + Sbjct: 12 KLKRIPDKSGVYFMKDNKETIIYIGKAKSLKKRVSSYFNNSNKDAKTTALVEHIRDIDYI 71 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG-- 119 +T EVEAL+LEA MI++ KP +NILL+D KSFP+I +T++H P + K R+ + Sbjct: 72 LTENEVEALILEAEMIRKHKPHYNILLKDQKSFPFIAVTNEH-FPRVIKARNVIDKENAK 130 Query: 120 ---SYFGPFASVDAVEKTINSLQRTFFLRSCA-DSVFRHRTRPCLLFQIKRCSGPCTGEI 175 Y+GP+ + + + + + F LR C D + RPCL + I +C+ PC I Sbjct: 131 KYKKYYGPYVAAEKADNIVKFVVENFKLRRCKYDFPLKKPIRPCLYYHIGKCTAPCADLI 190 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 + E Y + + +A L G L ++ + M Q K ++E+A RD++ L +I Sbjct: 191 NEEDYDKTIDDAIMVLEGNVDELSVRLRQEMFQHAEKLEFEAAKDLRDKIDLLKYITVEQ 250 Query: 236 DSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNA--------- 283 + +D Y I G+ TF +++ + Sbjct: 251 SIYIPESDDIDIIGAYGENGNYIIVILSVKGGKLADRKTFSMQSPNNDEYYAEKGVSKYS 310 Query: 284 QILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQ 343 +ILS F Q+YT + + + + KQ + + + ++ ++ Sbjct: 311 EILSAFFTQYYTHANLIPASISVDFPIIDIDIIKDYLKQISGRE-VDIRLDKSRKGLMAI 369 Query: 344 ALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVG 403 A NA +K I + + F L P IE +D +HI G + MV Sbjct: 370 ANENAKHIFKEKALIREVPLGITR-LQEIFKLKKAPSIIESFDIAHIQGSYTMAGMVRFV 428 Query: 404 ENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSW 463 YR FN+ V DD A ++ + RR+ +L ++ Sbjct: 429 NGVSDNKNYRIFNMKT--VTGIDDFASIKEAVYRRYKRLRDEN--------------LTF 472 Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMR 523 PD++++DGGKGQL++A LK+L+++ + I+++AK + E + + E + LN Sbjct: 473 PDLILIDGGKGQLNSAIEALKELDIKGQ-PIMALAKKFE-----EIYLPNRNEPVRLNDN 526 Query: 524 DPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMIS 582 +P F+Q++RDE HR+ T+H K+R + S L+ ING+G L F + I Sbjct: 527 EPARLFLQKVRDETHRWVNTSHGKKRSREMVKSELEGINGLGKKGIEKLYAHFINIDNIK 586 Query: 583 RSSPETLASIEGISKKIACKIYNHFHK 609 +S E++ +I GIS K+A IY+HFHK Sbjct: 587 NASFESIRNIPGISYKVANNIYDHFHK 613 >gi|224373024|ref|YP_002607396.1| excinuclease ABC subunit C [Nautilia profundicola AmH] gi|254764940|sp|B9L9T8|UVRC_NAUPA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|223588867|gb|ACM92603.1| excinuclease ABC, C subunit [Nautilia profundicola AmH] Length = 611 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 177/638 (27%), Positives = 307/638 (48%), Gaps = 66/638 (10%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH------SNNHTHRITHMISQI 55 + +P+ PG+YQ D G++LY+GKA +L+KR+KSY ++N + RI MIS+ Sbjct: 6 KIKSLPDQPGIYQYFDENGKLLYIGKAKSLKKRVKSYFRFNPFRPADNLSPRIYKMISEA 65 Query: 56 NNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS 115 ++ + V +E +AL+LE ++IK+LKP++NILLRDDK++PYI I P R Sbjct: 66 KDLNYIVVESENDALILENSLIKQLKPKYNILLRDDKTYPYIYIDLDEPFPMPQITRKVV 125 Query: 116 TIQG-SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE 174 + YFGPF+S + + ++ L + CL QI RC PC G+ Sbjct: 126 KGKNIKYFGPFSSGAS--AILKTIYEEIPLVQSK--SCLRSGKACLYHQIGRCLAPCEGK 181 Query: 175 ISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234 ++S +YM++V +A + + + E + + M + +E A RDR+ ++ + + Sbjct: 182 VTSREYMKYVDQAIELIHDK-EKILEILNQKMQKYAENLQFEEAAEIRDRIKSIESAEIY 240 Query: 235 NDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLR 291 + +D F++ A + F G+ + + + + +I + + Sbjct: 241 SHVDLAKLEDLDIFAVEIFNKKAVVIRIFVRQGKVVASSNSVINSQTVPEIGEIYTRAIL 300 Query: 292 QFYTDKPC--PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH 349 +FY+ + IL+ ++ EE L +++G K+ I P E++ +I+ A +NA Sbjct: 301 EFYSTETPFTSSKILVGDDFEEREWLSQVLSEKFGKKISIITPTTKERKSLIKLAKLNAL 360 Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 + +L + F L + P +IE++D SH+ G + VG MVV + F K Sbjct: 361 E-----VIKNQKENTVLDELKILFNLQNTPYKIEVFDTSHMQGEATVGAMVVWEDGKFKK 415 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 + YR ++L +D+ + MR +L R + Q + PD+ ++ Sbjct: 416 SDYRHYHLE-----GKDEYSQMRELLTR----------------RAQSFEKSPPPDLWLI 454 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAK--------GPKRSAGMEKFFVKKG------ 515 DGGK QL+ A+ ++ I +++I+K K A + +F+ + Sbjct: 455 DGGKAQLNLAKEIIDSTG--ANIDVLAISKEKIDAKAHRAKGKAKDKIYFINEKLKVKSE 512 Query: 516 ----EALVLNMRDPILYFIQRLRDEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRL 570 + L L+ D L F+Q LRDEAHRFAI HRK +RKK L ++ GIG + Sbjct: 513 KLNIDKLELSQSDKRLQFLQMLRDEAHRFAIEFHRKTKRKKDTQIDLLQVKGIGKAKMTK 572 Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 LL FG+ I ++S + L + +++K A I F Sbjct: 573 LLNYFGSFDNIKKASFDELKDV--LNEKDAKAIKEFFK 608 >gi|76801195|ref|YP_326203.1| excinuclease ABC subunit C [Natronomonas pharaonis DSM 2160] gi|90111070|sp|Q3ITA0|UVRC_NATPD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|76557060|emb|CAI48634.1| excinuclease ABC chain C [Natronomonas pharaonis DSM 2160] Length = 575 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 191/607 (31%), Positives = 294/607 (48%), Gaps = 55/607 (9%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 ++P PGVYQ AG VLYVGKA +L++R++SY + RI M+ + F VT Sbjct: 12 ELPAEPGVYQF--EAGESVLYVGKAVDLRERVRSY--VAPRSDRIRRMVEAAAAVDFAVT 67 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE +ALLLEAN+IKR +PR+N+ L+DDKS+P + +T P + R + FG Sbjct: 68 DTETQALLLEANLIKRHQPRYNVRLKDDKSYPLVQLTAHEA-PRIEITRTP-DEAATVFG 125 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ VE + +L+ T+ LR C+D + R RPCL +++ CS PCTGEI ++ Y E Sbjct: 126 PYTDKSRVETVVKALRETYELRGCSDHKYEGRDRPCLDYELGLCSAPCTGEIDTDAYAED 185 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM- 242 V A++F G L E + R M A + +E A RDRL A+ + Sbjct: 186 VESARRFFDGETGVLAEPLRREMETAAASQAFERAASLRDRLEAVETFHEGGSEAVSGRG 245 Query: 243 ----DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE-STNAQILSYFLRQFYTDK 297 D + A + G+ + ++ + +L+ F+ QFY ++ Sbjct: 246 GRRLDVLGVAVEGESATVARLRSEDGKLVERDRHRVDAPADAESVPSVLAAFIPQFYAER 305 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P+ +LLSE ++ L + + V I VP G ++E AL NA R+ + Sbjct: 306 SLPDVLLLSERYDDEELDQWLHAEG----VDIRVPGAGRAATLVELALKNARRTTAEADG 361 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + + D P+RIE +D SH G AVG VV + YR+ +L Sbjct: 362 PTALARRLGID---------RPERIEGFDVSHAGGKDAVGSNVVFVDGSPETADYRRRSL 412 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 DD A MR ++ R ++ ++ ++ PD++++DGG GQL Sbjct: 413 DDE----NDDYANMRRLVRWRATRAVEGRDDR------------PTPDLLLIDGGDGQLG 456 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD-PILYFIQRLRDE 536 AAQ L + + + I++AK E G A + D P L +QR+RDE Sbjct: 457 AAQDALAETGWD--VPAIALAKAD------ELVVTSDGVA---DWDDGPALRLLQRVRDE 505 Query: 537 AHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 AHRFA+ H++ R A +PLD + G+GP + LL+ FGTV + +S E L ++G+ Sbjct: 506 AHRFAVQYHQQVRD-AVSTPLDSVPGVGPELRERLLKRFGTVDGVRSASREELERVDGVG 564 Query: 597 KKIACKI 603 + A I Sbjct: 565 EDTAAAI 571 >gi|330443842|ref|YP_004376828.1| excinuclease ABC subunit C [Chlamydophila pecorum E58] gi|328806952|gb|AEB41125.1| excinuclease ABC, C subunit [Chlamydophila pecorum E58] Length = 597 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 183/607 (30%), Positives = 292/607 (48%), Gaps = 39/607 (6%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFT 61 + +P+ PGVY M D G+VLYVGKA NL+ RI Y H RI ++ + + Sbjct: 8 LDLIPKTPGVYLMKDSQGKVLYVGKAKNLRNRIAMYFHKKGDVRERIPFLMQKTAFLETI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHR---DSSTIQ 118 E EALLLE N+IK+ P++N+LL+DDK+F + I+ +H P + R ST Q Sbjct: 68 TVSNETEALLLENNLIKKYHPKYNVLLKDDKTFFCLAISLQHPWPKIEAIRCRSVHSTKQ 127 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 FGP+ S +A ++ L F LR+C+D F R RPC+L+++KRC PC S E Sbjct: 128 HLIFGPYVSSEACRALLDVLGLWFPLRTCSDKEFAIRKRPCVLYEMKRCLAPCVNLCSHE 187 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 +Y + +A FL G + ++ + A+ + +E A + L + + Sbjct: 188 EYQAVLEKAILFLKGKMDEVISQLESAIQTASKQLKFEQAAAYYRTLTLIKQAMTKQNVE 247 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + +D LY N+ + G+ G + +++ +L+ F+ QFYT Sbjct: 248 KFHMHNIDAIGLYRNQQQTVLTILTVRSGKLLGAKHYTFFENAQED-QDVLTSFILQFYT 306 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 D+ +LS L G I PK G +R+++ A NA Sbjct: 307 DQTRLPQEILSPLPLTPQLGS---LLHKGSPPHIRAPKTGYRRELVMLAKHNAEE---FA 360 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 ++ S + ++ + P RIE YDNSH+ G A+G +V + V YR F Sbjct: 361 KTSSQSVHLPYEEMKTMLNIKECPYRIECYDNSHLQGTHAIGVYIVFENDRLVPQHYRTF 420 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 +L P+ ++D + VL RRFS L P+++++DGG+ Sbjct: 421 SLTPS--VAKNDLRALEEVLLRRFSSLT-----------------SPLPNMIVIDGGRSH 461 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAG---MEKFFVKK-GEALVLNMRDPILYFIQ 531 A+ +L+ LN+ I I+S+AK + EK + + + L +L F Q Sbjct: 462 YICAKKILETLNLTG-IEIVSLAKEASNHSASLTREKIYTDTFPKGVQLLPTAKVLQFFQ 520 Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 LRDEAHRFAI THRK+R K ++ ++I GIG ++ LL+ F + K + ++S E L + Sbjct: 521 LLRDEAHRFAIHTHRKKRNKELFTQ-EKIPGIGKVKYERLLKHFKSWKNVMKASQEELET 579 Query: 592 IEGISKK 598 I G+++K Sbjct: 580 IPGLTQK 586 >gi|329943171|ref|ZP_08291945.1| excinuclease ABC, C subunit [Chlamydophila psittaci Cal10] gi|332287752|ref|YP_004422653.1| excinuclease ABC subunit C [Chlamydophila psittaci 6BC] gi|325507018|gb|ADZ18656.1| excinuclease ABC subunit C [Chlamydophila psittaci 6BC] gi|328814718|gb|EGF84708.1| excinuclease ABC, C subunit [Chlamydophila psittaci Cal10] Length = 629 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 171/595 (28%), Positives = 286/595 (48%), Gaps = 38/595 (6%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVTCTEVEALLLE 73 M D +G VLY+GKA NL+ RI +Y + RI ++ + +I + E EA LLE Sbjct: 1 MKDSSGEVLYIGKAKNLRNRISTYFRKQGDSRERIPFLMKKTTDIETILVSNETEAFLLE 60 Query: 74 ANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS---STIQGSYFGPFASVDA 130 N+IK+ P++N+LL+DDK+F + I+ H P + R S+ + FGP+ S +A Sbjct: 61 NNLIKKYHPKYNVLLKDDKTFFCLAISLTHLWPKIDVIRTKAVTSSKKQIIFGPYVSAEA 120 Query: 131 VEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKF 190 + + + F LR+C++ F R RPC+L+++KRC PC S E+Y + + +A F Sbjct: 121 CRTLLEVISQWFPLRTCSNREFASRKRPCILYEMKRCLAPCVNLCSHEEYEQTLEKAILF 180 Query: 191 LSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMDCFSL 247 L G + + + +++ +A+ ++ +E A ++ L + + +D L Sbjct: 181 LKGQVSEVVQDLEKSIEKASKEQKFEQAGMYYRTLQLIQQAMVKQHVEKFHFQNIDAIGL 240 Query: 248 YHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSE 307 Y I G+ G F +++ + S+ L+ + + P+ IL Sbjct: 241 YRKYQKTVITILTIRSGKLLGARHFPFSENAQEDADLLASFILQYYTSQPQTPKEILTPI 300 Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367 L ++ PK G R+++ A NA + S + + Sbjct: 301 PLNIPDLP---CLLNKDTPPQLRSPKTGYGRELLNLAKNNAQVHAETTI---QSSALPYE 354 Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427 + K P RIE YDN+H+ G AVG +V + YR F++ + +D Sbjct: 355 ELKKILKSSDYPYRIECYDNAHLQGSHAVGVYIVYENDALSPKDYRTFSISSS---AYND 411 Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487 A R VL RRF+ L S PD++++DGG+ Q + A+ LK+LN Sbjct: 412 LAAFREVLSRRFTSLT-----------------SSIPDMILIDGGRTQYAQAKKTLKELN 454 Query: 488 VENRITIISIAKGPKRSA---GMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAIT 543 + I ++SIAK + EK F + ++L +L F Q+LRDEAHRFAI+ Sbjct: 455 LTG-IQVVSIAKEAGSHSSSLKKEKLFCDTFPQGVLLPPTSKLLQFFQKLRDEAHRFAIS 513 Query: 544 THRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 HRK+R K P ++I GIG ++++ LLQ F + + + ++S L +I G++KK Sbjct: 514 RHRKKRHKDFLLPKEKIPGIGEIKRKRLLQKFKSWEQVMKASQGELEAIPGLTKK 568 >gi|283783279|ref|YP_003374033.1| excinuclease ABC, C subunit [Gardnerella vaginalis 409-05] gi|297243494|ref|ZP_06927426.1| excinuclease ABC subunit C [Gardnerella vaginalis AMD] gi|283441822|gb|ADB14288.1| excinuclease ABC, C subunit [Gardnerella vaginalis 409-05] gi|296888539|gb|EFH27279.1| excinuclease ABC subunit C [Gardnerella vaginalis AMD] Length = 780 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 177/718 (24%), Positives = 292/718 (40%), Gaps = 113/718 (15%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 +S +P PGVY+ D GRV+YVGKA NL+ R+ +Y R M+ ++ + Sbjct: 68 ASRDIPAQPGVYKWRDGEGRVIYVGKAKNLRNRLANYFQPLYQLHPRTQSMVLTARSLEW 127 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TE EAL LE IK PRFN++ RDDK++PY+ ++ + P ++ R+ S Sbjct: 128 TVVSTEFEALTLEYTWIKAFNPRFNVVFRDDKTYPYVAVSLEETFPRVWITRNRSARHAR 187 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP+A V + +++SL +TF +R+C+ SVF RPCL I +CS PC G I Sbjct: 188 YFGPYAKVWPLRHSLDSLLKTFPIRTCSSSVFSKAHRTGRPCLFASIGKCSAPCIGNIDP 247 Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 ++ + V L+G + +I M +A+ + ++E A RD +A L+ I N Sbjct: 248 SEHRKMVEHVVGILTGSVGESYISQIKNEMKEASEELEFERAAKLRDEIAVLNTILQQNA 307 Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 +++ D F ++ A I F G RG + ++ + +++ +++ L + Sbjct: 308 VVFDNDVEADVFGFCGDELEASIHVFFVRAGMIRGEKNWSVERNEHISDSDLIADLLTRV 367 Query: 294 YTDKPCPENILLSEEAEETSLLEISFFKQY------------------------------ 323 Y + + + + Q Sbjct: 368 YAEYEQNYTQNHEDTISIKKVRDAVSSTQQATATDVILRAQATKTRRERQERTGREDLLA 427 Query: 324 -----GYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHI 378 ++ + + E+++ +E L N S E + L D A + Sbjct: 428 PISPVPREIIVPIKISDERKQELELWLSNIRGSQVSIRVAERGEKRALMDRANDNASQEL 487 Query: 379 PKRIEIYDNSHIMGCSAV--------------------------GCMVVVGE-----NGF 407 + NS M A+ G V Sbjct: 488 KRIKSSRINSIDMRTEAMNEIAKALGMSKSPLRIECYDISNTVDGSYQVASMVVFEDGVA 547 Query: 408 VKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEEN------------------ 448 ++YR F + + DD + + L RRF EN Sbjct: 548 RPSEYRHFAVRGEHGDGKIDDLSAVYETLLRRFKHKDVYAENRLDASDSSDTSDTSDSSD 607 Query: 449 -------------LNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITII 495 + + F P ++I+DGGK Q AA+ ++ V + IT+ Sbjct: 608 INICDANSISNKHFSGNSLTSARHFAYKPQLIIVDGGKEQAKAAKRAMRDAGVSD-ITVC 666 Query: 496 SIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAY 554 +AK + E + + ++ LY +QR RDE+HRFAI+ HRK R+K + + Sbjct: 667 GLAKKLE-----EVWLPDEDYPIIFKRSSEGLYLLQRARDESHRFAISYHRKLRRKGSLH 721 Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 S D I GIG + ++ LL SFG++K + +S E L + GI + A IY+ KN Sbjct: 722 STFDAIPGIGAVYRKRLLASFGSIKSLKNASLEDLQKVPGIGENKAKAIYSALRKNND 779 >gi|257452764|ref|ZP_05618063.1| excinuclease ABC subunit C [Fusobacterium sp. 3_1_5R] gi|317059305|ref|ZP_07923790.1| excinuclease ABC subunit C [Fusobacterium sp. 3_1_5R] gi|313684981|gb|EFS21816.1| excinuclease ABC subunit C [Fusobacterium sp. 3_1_5R] Length = 590 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 178/612 (29%), Positives = 292/612 (47%), Gaps = 39/612 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PGVY M +V+YVGKA NL KR+KSY + ++ I +I + + Sbjct: 7 DIPENPGVYLMK-EKNKVIYVGKAKNLHKRVKSYFQKEVDREKTRELVKHIEDIEYILCP 65 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST---IQGSY 121 +E++ALLLE N+IK+ P++NI L+D+K++PY+ +T K PA + R S Y Sbjct: 66 SELDALLLENNLIKKYNPKYNIALKDEKTYPYLSLT-KETFPAFHMIRKSKHLDLEHREY 124 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ K L + F +R C + + RPCL + +K C GPC + E+Y Sbjct: 125 FGPYP--FGAWKLKKILLKLFKIRDCFWDMNKKYKRPCLKYDMKTCLGPCVHKEVQEEYQ 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 V + ++ L G + +++ M + K ++E AII R+++ L++++ S Y Sbjct: 183 AMVAKVREVLKGNTKDCIQELRVQMEEMAEKFEFEKAIILREQIQELANLEKEQISEYGK 242 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F + + G+ G + E + L +Y P Sbjct: 243 EVDEDIFVWKEVFDRMFLCVLNVREGKILGKISNNFLL-EEKVYENLEEELLLSYYRKYP 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII--EQALINAHRSHTQKL 356 P++I+ E+ +E + + + + + + R++ E AL+N + Sbjct: 302 IPKSIVFEEKQQEVLKEGLIHLELMFDRKIESYYPKIKSRRLELLEMALLNLEKDIENFH 361 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + + +K+ L H P+RIE +D S+I G AV M V E K +YRKF Sbjct: 362 LKKEVIEDGMKELYSFLGLKHFPRRIECFDISNIQGKDAVASMSVSIEGKAAKGEYRKFK 421 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + D DD AMMR V+ RR+S+L + +PDV+++DGG GQ+ Sbjct: 422 IQCKDTP--DDFAMMREVIYRRYSKLEPKD----------------FPDVILIDGGLGQI 463 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 ++A +L++L ++S+AK + E + + ++ L QR+RDE Sbjct: 464 NSAGAILEELGKIQFTDLLSLAKRDE-----EVYKYGETLPYSISKDKEALKIFQRVRDE 518 Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 AHRF IT HRK R K S LD I GIG +R++ LL+ F +V + +S E L + Sbjct: 519 AHRFGITYHRKLRSKRVISSELDHIEGIGEVRRKKLLKRFSSVSGVKAASLEELEEC--V 576 Query: 596 SKKIACKIYNHF 607 K++A +I Sbjct: 577 PKQVAIRIKEEL 588 >gi|89897991|ref|YP_515101.1| excinuclease ABC subunit C [Chlamydophila felis Fe/C-56] gi|119367640|sp|Q255T2|UVRC_CHLFF RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|89331363|dbj|BAE80956.1| excinuclease ABC complex nuclease subunit C [Chlamydophila felis Fe/C-56] Length = 604 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 185/608 (30%), Positives = 299/608 (49%), Gaps = 40/608 (6%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFT 61 + +P PGVY M D +G VLY+GKA NL+ RI +Y + RI ++ + +I Sbjct: 8 PKIIPPSPGVYLMKDSSGEVLYIGKAKNLRNRITTYFQKQGDSRERIPFLMKKTTDIETI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS---STIQ 118 + E EALLLE N+IK+ P++N+LL+DDK+F + I+ H P + R S+ + Sbjct: 68 LVSNETEALLLENNLIKKYHPKYNVLLKDDKTFFCLAISLSHPWPRIDAIRTKAVTSSKK 127 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 FGP+ S +A + + + + F LR+C++ F R RPC+L+++KRC PC S E Sbjct: 128 QIVFGPYVSAEACQTLLEVIGQWFPLRTCSNREFSTRKRPCILYEMKRCLAPCVNFCSQE 187 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 +Y E + +A FL G + +K+ +++ +A+ ++ +E A ++ L + Sbjct: 188 EYAETLEKAVLFLKGQVSEIIQKLEKSIEKASQEQKFEQAGMYYRTLKLIQQAMVKQHVE 247 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + +D LY I G+ G F +++ + +LS F+ Q+Y Sbjct: 248 KFHFQNIDAIGLYRKHQETVITVLTIRSGKLLGARHFPFSENAQED-SDLLSSFILQYYA 306 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 ++P P+ IL L + + I PK G ++++ A NA Sbjct: 307 NQPHIPKEILTPFSLNIPDLPHLLNKEAPPR---IRSPKTGYGKELLNLAKNNAEMHAQT 363 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + S + ++ K P RIE YDN+H+ G AVG +V N YR Sbjct: 364 SV---QSSVLPYEEMKKILKTQDYPYRIECYDNAHLQGSHAVGVYIVYENNALSPKNYRT 420 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + + +D A VL RRFS + PD++++DGG+ Sbjct: 421 FAISSS---AHNDLAAFHEVLSRRFS-----------------STSSPLPDMIVIDGGRL 460 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAG---MEKFFVKK-GEALVLNMRDPILYFI 530 Q S A+ LKKLN+ I I+SIAK +G EK F + + L +L F Sbjct: 461 QYSQAKKTLKKLNLTG-IQIVSIAKEASNHSGSLRHEKLFCDIFPQGIQLPPTSKLLQFF 519 Query: 531 QRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 Q+LRDEAHRFAI+ HRK+R + P ++I GIG ++++ LL+ F + K + ++S L Sbjct: 520 QKLRDEAHRFAISKHRKKRSRDLLLPQEKIAGIGEVKRKRLLKKFKSWKQVMQASQGELE 579 Query: 591 SIEGISKK 598 +I G++KK Sbjct: 580 TIPGLTKK 587 >gi|270284959|ref|ZP_06194353.1| excinuclease ABC subunit C [Chlamydia muridarum Nigg] gi|301336357|ref|ZP_07224559.1| excinuclease ABC subunit C [Chlamydia muridarum MopnTet14] Length = 579 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 183/603 (30%), Positives = 280/603 (46%), Gaps = 42/603 (6%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVTCTEVEALLLE 73 M D G VLYVGKA NL+ R+ SY+ N + RI ++ + +I V E EALLLE Sbjct: 1 MKDSQGVVLYVGKAKNLRNRLSSYLQKNGDSRERIPFLMKRTADIDTIVVSNETEALLLE 60 Query: 74 ANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD----SSTIQGSYFGPFASVD 129 N+IK+ +PR+N+LL+DDK+F + I+ +H P + R S + FGP+ S + Sbjct: 61 NNLIKKYQPRYNVLLKDDKTFFCLSISLQHPWPKIEAIRTRALSPSKKKQLLFGPYVSAE 120 Query: 130 AVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKK 189 A + + F LR+C+D F R RPC+L+++KRC PC G S +Y E + +A Sbjct: 121 ACYALLEVISHWFPLRTCSDREFSTRQRPCVLYEMKRCLAPCVGFCSQTEYQETLEKAIL 180 Query: 190 FLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMDCFS 246 FL G + + +A+ + +E A L + +D Sbjct: 181 FLKGEVDTTIANLEEAIKKASQEHKFEHAAALYRTLTLIRQTMAKQHVEKFQAYDIDVLG 240 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLS 306 LY LA I + G+ G F +++ ++ S+ L+ + + P+ I + Sbjct: 241 LYRKGPLAIISVLSVYSGKLLGARHFTFPENAQEDSSLFSSFILQYYAENTRIPKQIFVP 300 Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366 + L + KI PK ++++ A NA S + Sbjct: 301 VSPDSPELP---YLLNAAEPPKIRCPKTEYGKELLALAHKNAAEQAKPL----NSITLPY 353 Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426 ++ + F P RIE YDN+H+ G VG +V + F QYR F++ D Sbjct: 354 EELQQLFKFSQYPNRIECYDNAHLQGEHNVGVYIVFEKGSFSPKQYRTFSI----TSHGD 409 Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486 D A VL RRF L PD++++DGG+ Q AQ +L+KL Sbjct: 410 DLAAFEEVLTRRFRSLTTE-----------------LPDLIVIDGGRNQFRRAQHILEKL 452 Query: 487 NVENRITIISIAK---GPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542 N+ I ++SIAK R EK F + + ++LN IL F Q LRDEAHRFAI Sbjct: 453 NLTG-IAVVSIAKESGNHSRGLQQEKLFCEAFPQGILLNPTSEILQFFQLLRDEAHRFAI 511 Query: 543 TTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 +R + KA + +I GIG + LLQ F + K I +S E L +++G++KK + Sbjct: 512 NRYRNKHSKAILTT-KKIPGIGKTKTTHLLQKFKSWKRILSASEEELKTVQGLTKKDIQR 570 Query: 603 IYN 605 I Sbjct: 571 IQE 573 >gi|332141513|ref|YP_004427251.1| excinuclease ABC subunit C [Alteromonas macleodii str. 'Deep ecotype'] gi|327551535|gb|AEA98253.1| excinuclease ABC subunit C [Alteromonas macleodii str. 'Deep ecotype'] Length = 544 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 172/533 (32%), Positives = 278/533 (52%), Gaps = 24/533 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M + G V+YVGKA NL+KR+ SY ++ + ++SQI ++ TV Sbjct: 10 LKNLTSQPGVYRMYNSQGEVIYVGKAKNLKKRVSSYFRTHLDNAKTRSLVSQIADMDVTV 69 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +E EA LLE N IK+ KPR+N+++RDDKS+P+I ++ H+ P L HR +G YF Sbjct: 70 VNSETEAFLLENNFIKKYKPRYNVVMRDDKSYPFIFLS-DHEHPRLSFHRGPQKKKGEYF 128 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYM 181 GP+ S +V +++ S+QR F +R C DS +R R+RPCL +Q++RCS PC +S E+Y Sbjct: 129 GPYPSAWSVRESLRSMQRIFPVRQCEDSYYRARSRPCLQYQMQRCSAPCVEGYVSDEEYK 188 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IY 239 E V+ A+ FL G N + ++ M +A+ ++E+A +RD++ AL +Q Sbjct: 189 EQVNFARLFLKGKNQQVIGELVEKMEKASEALNFEAAARYRDQINALRKVQERQWVAGTQ 248 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--DK 297 + MD F N+ACIQ F GQ G+ FF K + + ++ F QFY +K Sbjct: 249 DEMDVFGFALKGNMACIQVMFIREGQLLGSKAFFPKVPNIADEQEVFESFFLQFYLAGNK 308 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P+ I+LS + + + G+KV + EKRK ++ A NA + + S Sbjct: 309 VIPKQIVLSNSLNDEEAIAKVLASEAGHKVHFFKGAREEKRKYLQLAQSNAQAALDAQYS 368 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + S D + +R+E +D SH G V VV G +K+ YR++N+ Sbjct: 369 QQKSVFARYLDLEGALEVDTPIQRMECFDISHTSGQQTVASCVVFNREGPLKSDYRRYNI 428 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + DD A M L+RR+ + + ++ PD++ +DGGKGQL+ Sbjct: 429 EG--ITPGDDYAAMAQALKRRYKSVKEVQK---------------IPDLLFIDGGKGQLA 471 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYF 529 A+ ++ + + ++ +AKG R G+E + E L ++ P L Sbjct: 472 QAEAFFEEWPHDKKPMLLGVAKGTTRKPGLETLILAGSHEVLPMDSHSPGLTL 524 >gi|298252784|ref|ZP_06976578.1| excinuclease ABC subunit C [Gardnerella vaginalis 5-1] gi|297533148|gb|EFH72032.1| excinuclease ABC subunit C [Gardnerella vaginalis 5-1] Length = 779 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 176/717 (24%), Positives = 292/717 (40%), Gaps = 112/717 (15%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 +S +P PGVY+ D GRV+YVGKA NL+ R+ +Y R M+ ++ + Sbjct: 68 ASRDIPAQPGVYKWRDGEGRVIYVGKAKNLRNRLANYFQPLYQLHPRTQSMVLTARSLEW 127 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TE EAL LE IK PRFN++ RDDK++PY+ ++ + P ++ R+ S Sbjct: 128 TVVSTEFEALTLEYTWIKAFNPRFNVVFRDDKTYPYVAVSLEETFPRVWITRNRSARHAR 187 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP+A V ++ +++SL +TF +R+C+ SVF RPCL I +CS PC G I Sbjct: 188 YFGPYAKVWSLRHSLDSLLKTFPIRTCSSSVFSKAHRTGRPCLFASIGKCSAPCIGNIDP 247 Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 ++ + V L+G + +I M +A+ + ++E A RD +A L+ I N Sbjct: 248 SEHRKMVEHVVGILTGSVGESYISQIKNEMKEASEELEFERAAKLRDEIAVLNTILQQNA 307 Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 +++ D F ++ A I F G RG + ++ + +++ +++ L + Sbjct: 308 VVFDNDVEADVFGFCGDELEASIHVFFVRAGMIRGEKNWSVERNEHISDSDLIADLLTRV 367 Query: 294 YTDKPCPENILLSEEAEETSLLEISFFKQY------------------------------ 323 Y + + + + Q Sbjct: 368 YAEYEQNYTQNHEDTISIKKVRDAVSSTQQATATDVILRAQATKTRRERQERTGREDLLA 427 Query: 324 -----GYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHI 378 ++ + + E+++ +E L N S E + L D A + Sbjct: 428 PISPVPREIIVPIKISDERKQELELWLSNIRGSQVSIRVAERGEKRALMDRANDNASQEL 487 Query: 379 PKRIEIYDNSHIMGCSAV--------------------------GCMVVVGE-----NGF 407 + NS M A+ G V Sbjct: 488 KRIKSSRINSIDMRTEAMNEIAKVLGMSKSPLRIECYDISNTVDGSYQVASMVVFEDGVA 547 Query: 408 VKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEEN------------------ 448 ++YR F + + DD + + L RRF E+ Sbjct: 548 RPSEYRHFAVRGEHGDGKTDDLSAVYETLLRRFKHKDVYVEDRLDTNASDSSDISDSSDI 607 Query: 449 ------------LNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIIS 496 + + F P ++I+DGGK Q AA+ +K V + IT+ Sbjct: 608 NICDANSISNKHFSANSLTSARHFAYKPQLIIVDGGKEQAKAAKRAMKDAGVSD-ITVCG 666 Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYS 555 +AK + E + + ++ LY +QR RDE+HRFAI+ HRK R+K + +S Sbjct: 667 LAKKLE-----EVWLPDEDYPIIFKRSSEGLYLLQRARDESHRFAISYHRKLRRKGSLHS 721 Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 D I GIG + ++ L SFG++K + +S E L + GI + A IY+ KN Sbjct: 722 TFDAIPGIGAVYRKRLFASFGSIKSLKNASLEDLQKVPGIGENKAKAIYSALRKNND 778 >gi|257466867|ref|ZP_05631178.1| excinuclease ABC subunit C [Fusobacterium gonidiaformans ATCC 25563] gi|315918015|ref|ZP_07914255.1| excinuclease ABC subunit C [Fusobacterium gonidiaformans ATCC 25563] gi|313691890|gb|EFS28725.1| excinuclease ABC subunit C [Fusobacterium gonidiaformans ATCC 25563] Length = 590 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 177/612 (28%), Positives = 291/612 (47%), Gaps = 39/612 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PGVY M +V+YVGKA NL KR+KSY + ++ I +I + + Sbjct: 7 DIPENPGVYLMK-EKNKVIYVGKAKNLYKRVKSYFQKEVDREKTRELVKHIEDIEYILCP 65 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST---IQGSY 121 +E++ALLLE N+IK+ P++NI L+D+K++PY+ +T K PA + R S Y Sbjct: 66 SELDALLLENNLIKKYNPKYNIALKDEKTYPYLSLT-KETFPAFHMIRKSKHLDLEHREY 124 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ K L + F +R C + + RPCL + +K C GPC + E+Y Sbjct: 125 FGPYP--FGAWKLKKILLKLFKIRDCFWDMNKKYKRPCLKYDMKTCLGPCVHKEVREEYQ 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 V + ++ L G + +++ M + K ++E AII R+++ L++++ S Y Sbjct: 183 AMVAKVREVLKGNTKDCIQELRVQMEEMAEKFEFEKAIILREQIQELANLEKEQISEYGK 242 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F + + G+ G + E + L +Y P Sbjct: 243 EVDEDIFVWKEVFDRMFLCVLNVREGKILGKISNNFLL-EEKVYENLEEELLLSYYRKYP 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII--EQALINAHRSHTQKL 356 P++I+ E+ +E + + + + + + R++ E A +N + Sbjct: 302 IPKSIVFEEKQQEVLKEGLIHLELMFDRKIESYYPKIKSRRLELLEMAFLNLEKDIENFH 361 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + + +K+ L H P+RIE +D S+I G AV M V E K +YRKF Sbjct: 362 LKKEVIEDGMKELYSFLGLKHFPRRIECFDISNIQGKDAVASMSVSIEGKAAKGEYRKFK 421 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + D DD AMMR V+ RR+S+L + +PDV+++DGG GQ+ Sbjct: 422 IQCKDTP--DDFAMMREVIYRRYSKLEPKD----------------FPDVILIDGGLGQI 463 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 ++A +L++L ++S+AK + E + + ++ L QR+RDE Sbjct: 464 NSAGAILEELGKIQFTDLLSLAKRDE-----EVYKYGETLPYSISKDKEALKIFQRVRDE 518 Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 AHRF IT HRK R K S LD I GIG +R++ LL+ F +V + +S E L + Sbjct: 519 AHRFGITYHRKLRSKRVISSELDHIEGIGEVRRKKLLKRFSSVSGVKVASLEELEEC--V 576 Query: 596 SKKIACKIYNHF 607 K++A +I Sbjct: 577 PKQVAIRIKEEL 588 >gi|222481129|ref|YP_002567366.1| excinuclease ABC, C subunit [Halorubrum lacusprofundi ATCC 49239] gi|254764935|sp|B9LUM9|UVRC_HALLT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|222454031|gb|ACM58296.1| excinuclease ABC, C subunit [Halorubrum lacusprofundi ATCC 49239] Length = 592 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 188/625 (30%), Positives = 299/625 (47%), Gaps = 66/625 (10%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVYQ LYVGKA NL+ R++SY ++ + RI M+ + + I F VT Sbjct: 12 DLPTEPGVYQFR-AGETTLYVGKAVNLRNRVRSY--ADPRSGRIRGMVGRADRIEFAVTD 68 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLEAN+IKRL+PR+N+ L+DDKS+P + IT H +P + RD +GP Sbjct: 69 TETQALLLEANLIKRLRPRYNVRLKDDKSYPLVAIT-DHPVPRIEVTRDPEE-GAVAYGP 126 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S VE + +++ + LR C+D + +R RPCL +++ CS PCTGEI E Y E V Sbjct: 127 FTSKGRVETVVKAIRDEYRLRGCSDHKYANRDRPCLDYEMGICSAPCTGEIDPESYAEDV 186 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH------NDSI 238 A++F G L + + R M A ++E A RDRL A+ + S Sbjct: 187 AAARRFFEGETGVLADPLRRRMEAAAENAEFERAANLRDRLEAVEAFHGEGGEAVSDHSD 246 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLK----------------TDSESTN 282 +D + + A + GQ L +T Sbjct: 247 DRTVDVLAAAVEGDTARVARLHSERGQLVDRSRHRLDAAAVGDDGEGDEDGFADPDANTP 306 Query: 283 AQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIE 342 A +LS FL Q+Y ++ P+ ILL+E + +++ + V + VP G + K++E Sbjct: 307 AAVLSAFLTQYYAEREFPDAILLAERPSDPDVIDWLEAEG----VSVRVPGAGREAKLVE 362 Query: 343 QALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVV 402 AL NA + ++ + + D P RIE +D SH G + VG V Sbjct: 363 LALKNARKRGGREDPVGALGERLGID---------RPARIEGFDVSHAQGTAVVGSDVCF 413 Query: 403 GENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPS 462 + + YR+ L DD A MR ++ R + + E++ Sbjct: 414 VDGSAETSDYRRKKLTDR----NDDYANMRELVRWRAERAVAGEDDRPD----------- 458 Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522 PD++++DGG GQL AA+ L + + + ++++AK E+ V Sbjct: 459 -PDLLLIDGGGGQLGAARDALAETGWD--VPVVALAK-------AEELVVTPTGTRRWPD 508 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMIS 582 P L+ +QR+RDEAHRFA++ H+ R + + LD++ G+GP +R LL+ FG+V+ + Sbjct: 509 DAPELHLLQRVRDEAHRFAVSYHQTVRDE-VKTVLDDVPGVGPQTRRRLLRRFGSVESVR 567 Query: 583 RSSPETLASIEGISKKIACKIYNHF 607 +S + L ++G+ A + Sbjct: 568 DASLDDLTDVDGVGDATADTLRERL 592 >gi|149194567|ref|ZP_01871663.1| excinuclease ABC subunit C [Caminibacter mediatlanticus TB-2] gi|149135311|gb|EDM23791.1| excinuclease ABC subunit C [Caminibacter mediatlanticus TB-2] Length = 606 Score = 401 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 181/636 (28%), Positives = 308/636 (48%), Gaps = 59/636 (9%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH------SNNHTHRITHMISQI 55 + +P+ PGVYQ D G++LY+GKA +L+KR+KSY ++N + RI MIS+ Sbjct: 4 KIKSLPDKPGVYQYFDENGKLLYIGKAKSLKKRVKSYFRFNPFRPADNLSPRIYKMISEA 63 Query: 56 NNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS 115 +I + V +E +AL+LE ++IK+LKP++NILLRDDK++PYI + + P L R Sbjct: 64 KDINYIVVESENDALILENSLIKQLKPKYNILLRDDKTYPYIYVNYDEEFPRLEITRKVV 123 Query: 116 TIQG-SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE 174 + Y+GPF+S + + ++ L + + CL +Q+K+C GPC G Sbjct: 124 KGKNIKYYGPFSSGAS--AILKTIYEEIPLIQSKSCI--KGKKVCLYYQLKKCLGPCEGL 179 Query: 175 ISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234 IS ++Y+++V++A K L + + + + M + +E A RDR+ A+ + + Sbjct: 180 ISRDEYLKYVNKAIKLLHNK-EKILDILNKKMQKFAENLQFEEAAEIRDRIKAIESAEIY 238 Query: 235 NDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLR 291 ++ +D F + A + F G+ + + +I + + Sbjct: 239 SNVDLAKLEDLDVFVVEVFDKKAIVIRIFVREGKVVASSNNIINFQVLPDKGEIYTRAIL 298 Query: 292 QFYTDKPC--PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH 349 +FY + IL+ ++ EE L + +++ +KI P E++K+I+ A INA Sbjct: 299 EFYNSETPFTSSKILVGDDFEEREWLSTTLSEKFKKNIKIITPTSKERKKLIDLAKINAL 358 Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 IL + F L +IP +IE++D SH+ G + VG M+V F K Sbjct: 359 EVM-----KNQKENTILLEIKNLFNLENIPYKIEVFDTSHMQGRATVGAMIVWENGKFKK 413 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 + YR ++L +D+ + M+ +L RR K+ S PD+ ++ Sbjct: 414 SDYRHYHLE-----GKDEYSQMKELLTRRAKSFEKD----------------SPPDLWLI 452 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISI---------AKGPKRSAGMEKFFVKKG----E 516 DGG Q + A+ ++ I IS AKG + ++ +K G E Sbjct: 453 DGGVAQFNLAKEIISSSGANVDILAISKEKIDLKAHRAKGKAKDKIYYQWRMKNGEWKIE 512 Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSF 575 + L+ D L F+Q LRDEAHRFAI HRK + K+ L +I GIG + LL F Sbjct: 513 EIKLSENDKRLQFLQMLRDEAHRFAIEFHRKTKLKEDKKIELLKIKGIGKAKMTKLLNYF 572 Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 G+ + I ++ + L + +++K A I F + + Sbjct: 573 GSFENIKKAKFDELKEV--LNEKDAQNIVVFFKEKS 606 >gi|291280224|ref|YP_003497059.1| excinuclease ABC subunit C [Deferribacter desulfuricans SSM1] gi|290754926|dbj|BAI81303.1| excinuclease ABC, C subunit [Deferribacter desulfuricans SSM1] Length = 608 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 183/615 (29%), Positives = 287/615 (46%), Gaps = 38/615 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PGVY LD LY+GKA NL+ R+KSY NN + M+ + +I++ +T Sbjct: 14 TIPEKPGVYIFLDKNSTPLYIGKAKNLRNRVKSYFT-NNLNLKTEIMVQKAFDIKYIITK 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 EVEALLLEAN+IK+ KP++NILL+D KS+PY+ IT H+ P + R S+ +Y GP Sbjct: 73 NEVEALLLEANLIKKEKPKYNILLKDSKSYPYLEIT-AHEYPKIKISRKISSD-STYLGP 130 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F +V + + + L + F +R+C++ F+ + + C+ +QIKRC+ PC G IS E+YM V Sbjct: 131 FVNVSDLREILRELLKLFPIRTCSEQTFK-KGKSCINYQIKRCTAPCEGLISKEEYMSLV 189 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALS----HIQNHNDSIYN 240 G NL E M + K ++E A +RD++ L + + N Sbjct: 190 DNIISVFKGKTKNLLEYFEEKMILHSKKLEFEKAAEYRDKINGLKKLSLNQHIVYKTDAN 249 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 + + + + F G+ G + + P Sbjct: 250 IDILYFKTIYEQYSGLLIIFIRNGKIIGVDREIFNSQIYQDDIPGFIIQFYTKNKILPEK 309 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 +I+++ LLE + + K + I++ A N +LS +I Sbjct: 310 ISIIINNNYFTDRLLEDTLKEFKKNIKLTKSIK----KDILDFADKNLQIFFETELSKKI 365 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 + + + KK LP+ IE D SH+ G + VG + F KN+YR++ + Sbjct: 366 KSKDLFEHLAKKCHLPNDINTIECIDISHLYGKNTVGVSIFFENGSFNKNRYRRYKIKSA 425 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 + DD + + R+ ++KN+E D+ I+DGGKGQL +A Sbjct: 426 N---NDDFLAIHEIFRRKALNIMKNKEEQA--------------DLYIIDGGKGQLQSAI 468 Query: 481 GVLKKLNVENRITIISIAKGPKRS------AGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 K+ N++ ISIAKG + + E + + + DP+L IQ+LR Sbjct: 469 RAFKEQNIQANF--ISIAKGRSKDEPNNNLSKEEVYIPGRKNPINFKKDDPVLLLIQKLR 526 Query: 535 DEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DEAHRFAI RK K SPL +I G+G + +L+ F + S + E L+ Sbjct: 527 DEAHRFAIEYQRKLALKDLTSSPLLQIKGVGEKTIKKVLKEFPDIYTNSNITSEELSKKC 586 Query: 594 GISKKIACKIYNHFH 608 ISKK+A I N Sbjct: 587 KISKKVAEDIVNFLR 601 >gi|330901192|gb|EGH32611.1| excinuclease ABC subunit C [Pseudomonas syringae pv. japonica str. M301072PT] Length = 524 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 175/520 (33%), Positives = 273/520 (52%), Gaps = 24/520 (4%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D +LYVGKA NL+KR+ SY H + ++S+I I T+T E EALLLE Sbjct: 1 MFDAEATLLYVGKAKNLKKRLASYFRKTGHAPKTGALVSRIAQIETTITGNETEALLLEQ 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 +IK +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S A+ ++ Sbjct: 61 TLIKEWRPPYNILLRDDKSYPYVFLSDN-AFPRLSIHRGTKKAKGRYFGPYPSAGAIRES 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194 ++ LQ+TF +R C DS F++RTRPCL +QIKRC GPC G + E Y E V + FL G Sbjct: 120 LSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSVMFLEGR 179 Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFSLYHNKN 252 ++ L +++ +M +A + D+E A RD++A L +Q+ +D + + N Sbjct: 180 SNALSDELNASMEKAAMALDFERAAELRDQVALLRRVQDQQSMDGGTGDVDVVAAFVNPG 239 Query: 253 LACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENILLSEEA 309 AC+ G+ G+ FF + E +++S FL Q++ D+ P ++++ Sbjct: 240 GACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAFLAQYFLGGIDRELPGEVIVNVIN 299 Query: 310 EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDF 369 ++ + + G ++ I+ +G + + + A+ NA ++ T +L+ + Sbjct: 300 DDFPAFVDAVEELRGVEMVISHRVRGTRARWQQMAVTNAEQALTARLANRQHVASRFEAL 359 Query: 370 TKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCA 429 K L P R+E YD SH G + V VV G G +K+ YR+FN+ V DD A Sbjct: 360 AKVLGLEDPPMRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VTAGDDYA 417 Query: 430 MMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE 489 M L RR+S++ E L PDV+++DGGKGQ+S A+ VL +L V Sbjct: 418 AMHQALTRRYSRIKAGEGKL--------------PDVLLVDGGKGQMSMARDVLNELQVP 463 Query: 490 NRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILY 528 + I ++ +AKG R AG E ++ L P L Sbjct: 464 DLI-LLGVAKGTTRKAGFETLYLNDSAHEFTLPGDSPALQ 502 >gi|255004102|ref|ZP_05278903.1| excinuclease ABC subunit C [Anaplasma marginale str. Virginia] Length = 584 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 203/563 (36%), Positives = 316/563 (56%), Gaps = 32/563 (5%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 GVY+ML G VLYVGKA +L+KR++SY + N + RI M+ I + VT +E EAL Sbjct: 32 GVYKMLGANGLVLYVGKAKDLKKRLRSYYNFNQMSDRILAMVGHITELDVIVTQSEAEAL 91 Query: 71 LLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFGPFASVD 129 LLEA +IK LKP++NI++RDDK +PYIL++ KH+ P + K+R G +GPF S Sbjct: 92 LLEAQLIKTLKPKYNIIMRDDKFYPYILLS-KHEYPRIVKYRGRKEAGLGKCYGPFISSL 150 Query: 130 AVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKK 189 V+ I++L++ F LRSC+D+ F R RPC+ ++++ CS PCT +IS E Y + VH A K Sbjct: 151 VVKLVISALRKAFQLRSCSDNFFASRDRPCIEYEMRNCSAPCTRKISEEDYAKSVHMAHK 210 Query: 190 FLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA---ALSHIQNHNDSIYNRMDCFS 246 L+G + L+ ++ +M + + DYESA+++RDRL ++ + + D S Sbjct: 211 VLTGKSKELQRELFDSMRKFSDNLDYESAMVYRDRLQALKSIQECVSFQTEMSCDADFVS 270 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLS 306 +Y C+Q F G + G+ +F+ + + + +L F+ Q Y+D P + + Sbjct: 271 IYGRSGTYCLQVISFRGGISYGSQPYFVDDGNYESESDVLGMFMLQVYSD--PPGRVYVD 328 Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366 E++ ++ + + KV I K E+ K + A +A + ++L + L Sbjct: 329 CESDYCEVINAALERLLTRKVDILTAKSHEELKFLRLARNSAMEALNRRLRDKA-LPAEL 387 Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426 ++ + F LP+ P+RIE+YDNSHI G G MVV G++G ++ +YRKF + V D Sbjct: 388 EELAELFGLPNPPERIEVYDNSHISGTHPFGVMVVCGKDGLLRKEYRKFKIQT--VLNGD 445 Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486 D +MM VL RRFS PS PD V++DGG+G +S+A VL L Sbjct: 446 DYSMMHEVLFRRFS-----------------EESPSVPDFVLIDGGRGHISSAIQVLGDL 488 Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546 I +AKG R+AG E F++ G + L+ ++ +++++RDEAHRFAIT+HR Sbjct: 489 G----IPFACMAKGSNRNAGEEVFYLPDGRKICLDPDSKLMLYMRKIRDEAHRFAITSHR 544 Query: 547 KRRKKAAYS-PLDEINGIGPLRK 568 R + S L +I G G R+ Sbjct: 545 SSRDRTLSSAVLCDIPGGGSARQ 567 >gi|237803221|ref|YP_002888415.1| excinuclease ABC subunit C [Chlamydia trachomatis B/Jali20/OT] gi|237805142|ref|YP_002889296.1| excinuclease ABC subunit C [Chlamydia trachomatis B/TZ1A828/OT] gi|231273442|emb|CAX10357.1| excinuclease ABC subunit C [Chlamydia trachomatis B/TZ1A828/OT] gi|231274455|emb|CAX11250.1| excinuclease ABC subunit C [Chlamydia trachomatis B/Jali20/OT] Length = 579 Score = 399 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 176/603 (29%), Positives = 284/603 (47%), Gaps = 42/603 (6%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHR-ITHMISQINNIRFTVTCTEVEALLLE 73 M D G VLYVGKA NL+ R+ SY+ + + I ++ + +I V E EA+LLE Sbjct: 1 MKDSQGTVLYVGKAKNLRNRLSSYLQKKGDSRKRIPFLMKKTTDIDTIVVSNETEAILLE 60 Query: 74 ANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD----SSTIQGSYFGPFASVD 129 N+IK+ +PR+N+LL+DDK+F + ++ +H P + R + FGP+ S + Sbjct: 61 NNLIKKYQPRYNVLLKDDKTFFCLSVSLEHPWPRIEAIRTRALSPGKKKQWLFGPYVSAE 120 Query: 130 AVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKK 189 A + + F LR+C+D F R RPC+L+++KRC PC G S +Y E + +A Sbjct: 121 ACYALLEVISLWFPLRTCSDREFSTRQRPCVLYEMKRCLAPCVGLCSQTEYQETLDKAVL 180 Query: 190 FLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMDCFS 246 FL G + + + + +A+ ++ +E A L + +D Sbjct: 181 FLKGDVRSTISNLEKAIEKASQEQKFEHAAALYRTLTLIRQTMAKQHVEKFQAYDIDVLG 240 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLS 306 LY +LA + + G+ G F +++ +A S+ L+ + + P+ I + Sbjct: 241 LYRKGSLAIVSVLSVYSGKLLGARYFIFPENAQEDSALFSSFILQYYAENPRIPKEIFVP 300 Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366 + L + KI PK ++++ A NA S Sbjct: 301 VSLDSPELP---YLLNTAEPPKIRCPKTEYGKELLALAHKNAAEQAKPF----NSITPPY 353 Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426 ++ F L P RIE YDN+H+ G VG +V F QYR F++ D Sbjct: 354 EELQHFFNLSQYPYRIECYDNAHLQGEHNVGVCIVFENGLFSPKQYRTFSI----TSHGD 409 Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486 D A VL RRF L P+++++DGG+ Q AQ +L++L Sbjct: 410 DLAAFEEVLTRRFRSLTTE-----------------LPNLIVIDGGRNQFKRAQRILEEL 452 Query: 487 NVENRITIISIAK---GPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542 N+ IT+++IAK +S EK F + + ++L+ IL F Q LRDEAHRFAI Sbjct: 453 NLTG-ITVVTIAKESGNHSKSLRQEKLFCETFPQGILLHPTSAILQFFQLLRDEAHRFAI 511 Query: 543 TTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 +RK+ KA + +I GIG ++ + LLQ F + K + +S E L +++GI+ K + Sbjct: 512 QHYRKKHAKAVLTT-KKIPGIGEVKTKRLLQKFKSWKRVFIASEEELKTVQGITAKDIQR 570 Query: 603 IYN 605 I Sbjct: 571 IQE 573 >gi|110669544|ref|YP_659355.1| excinuclease ABC subunit C [Haloquadratum walsbyi DSM 16790] gi|119367657|sp|Q18E52|UVRC_HALWD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|109627291|emb|CAJ53781.1| excinuclease ABC chain C [Haloquadratum walsbyi DSM 16790] Length = 585 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 177/618 (28%), Positives = 291/618 (47%), Gaps = 59/618 (9%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P PGVYQ L V YVGKA L+ R++SY ++ + RI M+++ ++I +T Sbjct: 12 ELPAEPGVYQFL-EDNTVRYVGKALELRDRVRSY--ADPRSERIRQMVARADDIDIALTE 68 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLEAN+IKR +PR+N+ L+DDKS+P + T+ H +P + RD + + FGP Sbjct: 69 TETQALLLEANLIKRHQPRYNVRLKDDKSYPLVQFTN-HSVPRIEVTRDPDSD-ATVFGP 126 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + V +E + +L+ + LR C+D + +R RPCL +++ CS PCTGEI + Y V Sbjct: 127 YTEVKRLETAVKALREVYGLRGCSDHKYNNRNRPCLEYEVGLCSAPCTGEIDATAYRSAV 186 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR--------------LAALSH 230 A +F G L + + + M A E++E A RDR +++ + Sbjct: 187 ESAVQFFEGKTGILADPLRQEMQAAATAEEFERAANIRDRLAVIESFHGGGEAAVSSEDN 246 Query: 231 IQNHNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST-NAQILSYF 289 + +D + A + GQ L + + +L+ F Sbjct: 247 SHTAETTSERAVDVLGVAIEGTTATVARLHSDNGQLVDRSQHRLNAPTGEDRASAVLTAF 306 Query: 290 LRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH 349 L Q+Y ++ P+ IL SE + + E + V I VP G + K+I+ AL NA Sbjct: 307 LTQYYAERSLPDAILCSEHPHDNDVREWLSVEG----VNIRVPGTGRESKLIDLALKNAR 362 Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 + L D + RIE +D SH G + VG V + Sbjct: 363 NGSVH-----DNESAALADALGFSIIN----RIEGFDVSHSQGRAVVGSNVCFIDGSAAT 413 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 + YR+ L DD A M+ +L R + + PD++++ Sbjct: 414 DAYRRKRLTDT----NDDYARMQELLTWRAKRACDGRDERPD------------PDLIVI 457 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQL AA+ ++ + ++ I++AK + V + P L+ Sbjct: 458 DGGKGQLRAAREAVETTGWD--VSTIALAKADE-------LVVTPNGVHDWDADAPQLHL 508 Query: 530 IQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 +QR+RDEAHRFA+ H+ R ++ L ++ G+G ++ LL+ FG+V+ + +S + L Sbjct: 509 LQRVRDEAHRFAVQYHQSIRD-DIHTVLSDVPGVGEQTQQALLRRFGSVENVRSASRDAL 567 Query: 590 ASIEGISKKIACKIYNHF 607 + G+ K+ A I N Sbjct: 568 CDVPGVGKQTADTIANRL 585 >gi|110004469|emb|CAK98806.1| putative uvrc protein excinuclease abc subunit c [Spiroplasma citri] Length = 593 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 167/614 (27%), Positives = 286/614 (46%), Gaps = 43/614 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y + +VLYVGKA NL+ R+ SY + + ++ T ++ +I + Sbjct: 10 QVEILPAKPGCYLFYNNYHQVLYVGKAKNLRSRVSSYFNK-VYNYKTTRLVQEIVRLETI 68 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 +T TE EAL+LE N+IK+ KP++NILL DDK +PYI+IT K K P R+ Y Sbjct: 69 ITKTEKEALILEHNLIKQYKPKYNILLNDDKHYPYIVIT-KEKDPQYLYVRNIHQKYARY 127 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GPF + I L+R + LR C ++ +PCL + I +CSG C +S + Y+ Sbjct: 128 YGPFPEGSHAREIIKVLERLYPLRRCKGNL----GKPCLYYHINQCSGACVKTVSPDYYI 183 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---- 237 + + + F G K+ + + M QA +E A + + L + Sbjct: 184 KMIKKVHSFFKGNFTETKKLLEKRMLQAADNLQFEEAHKLKLLIRNLDWTLSSQTVEMLN 243 Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 + +D SLY + T F+ G+ + D ++ +L+ Y Sbjct: 244 QNDDLDVISLYQTAEHLVLTTLFYRAGKLSYKDYEYYHLDFAEDCQELYRLYLQNIYQKN 303 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL- 356 P I+++E L + ++ PK ++ I++ A N++ S+ Q Sbjct: 304 ILPTKIIVNEIIALPEL-------NLLFDNRVFHPKTPIEKTIMKLATENSYESYVQYQT 356 Query: 357 --STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 E+++ +LK+ L +P IE+ D ++I G ++V +N YRK Sbjct: 357 TAQRELNNAEVLKELQMLLDLSELPYLIEMIDIANINDEFVTGGVIVYKNGRLSRNDYRK 416 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 +NL + QDD + V+ RR+ ++I+ E+ L P+++I+DGG Sbjct: 417 YNLE---IPDQDDTHRIAAVVTRRYQKVIQEEQAL--------------PNLIIMDGGIQ 459 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++A L KL++ I +I + K + + K E + L+ + F+ R++ Sbjct: 460 QVNACLKELAKLDLA--IPVIGLVKNNQHKT--DHLLNLKKEKIYLDKSSRLFLFLTRIQ 515 Query: 535 DEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 D+ H FAIT+ R+R+ KA S L+ I G G R +LL F ++ I ++S L + Sbjct: 516 DDVHHFAITSFRRRQTKALTTSILETIPGFGKQRIKLLNHHFESIGAIKKASDAELYQVL 575 Query: 594 GISKKIACKIYNHF 607 SKK+ + Sbjct: 576 H-SKKLIENLRKFL 588 >gi|269123283|ref|YP_003305860.1| excinuclease ABC, C subunit [Streptobacillus moniliformis DSM 12112] gi|268314609|gb|ACZ00983.1| excinuclease ABC, C subunit [Streptobacillus moniliformis DSM 12112] Length = 588 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 183/615 (29%), Positives = 282/615 (45%), Gaps = 41/615 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P PGVY M DI +V+YVGKA NL+ R+ SY ++ + + +I I +I F Sbjct: 3 DIKNIPTNPGVYMMKDINDKVIYVGKAKNLKNRVSSYFNNPKSSMKTFELIKHIKDIEFF 62 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST----I 117 + +E+EAL+LE N+IK+ P++NILL+D+K++PY+ IT KIP + R Sbjct: 63 LCNSELEALILENNLIKKYLPKYNILLKDNKTYPYLKITT-EKIPQISVVRSRKHLEEST 121 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEIS 176 + YFGP+ +++ I L F ++ ++ + L + Sbjct: 122 EAYYFGPYP--FNMKEMIKLLLSAFDMQYFNIDMYNKKIIGNNLRYNNLNKELYFENVED 179 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 KY+E FL + ++ +K+ M + + DYE A+I R+R+ L+ + Sbjct: 180 ENKYIENSKAMINFLKNKDVSIIDKLHNQMIEYSENLDYEKALIMRNRIEKLNALIKTQL 239 Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 +++ D F L + N + G+ G + E I + Sbjct: 240 IEHSQQVDEDVFVLTNIGNNIFMCILNIRDGKIIGKNNIRIDNKYEE--QDIFEDLFLSY 297 Query: 294 YTDKPCPENILLSEEAEET-SLLEISFFKQYGYKVKITVPKQGEKR-KIIEQALINAHRS 351 Y +K P+NI++ + + +LE F + VKI P +R ++E N + Sbjct: 298 YDNKKIPKNIIIENKYKSNIDILEKYFSTEKNKLVKIHAPIIKSRRLSLLELGKKNLNYY 357 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 + + TE + L D L +PK IE +D S+I G AV M V + Sbjct: 358 LDEYMRTEKAISKGLIDLKNVLNLKKLPKIIECFDISNIQGKDAVSAMSVTVNGKADNKR 417 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YR F + D DD MMR L RR+S+L +E PDV+++DG Sbjct: 418 YRHFKITVKDTP--DDFMMMRETLMRRYSKLEIDE----------------LPDVILIDG 459 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GKGQL A VLK+L + IISIAK + E + + D L + Sbjct: 460 GKGQLGVAVDVLKELGKFEFLDIISIAKKEELIFKAE-----ESVPYRFDKNDEALKILI 514 Query: 532 RLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 R RDE HRF IT HRK R K S LDEI GIGP RK+ L+ FG++K I +S + L Sbjct: 515 RTRDEVHRFGITYHRKLRSKRNIKSVLDEIRGIGPKRKKELILKFGSIKNILEASEKELL 574 Query: 591 SIEGISKKIACKIYN 605 I + + +I Sbjct: 575 EI--LPLNVVKEIKK 587 >gi|319956177|ref|YP_004167440.1| excinuclease ABC subunit c [Nitratifractor salsuginis DSM 16511] gi|319418581|gb|ADV45691.1| Excinuclease ABC subunit C [Nitratifractor salsuginis DSM 16511] Length = 600 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 182/623 (29%), Positives = 298/623 (47%), Gaps = 52/623 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSY--MHSN-----NHTHRITHMISQINN 57 +P+ PGVYQ D GR+LYVGKA NL+ R++SY + + RI M+ + + Sbjct: 9 SLPKNPGVYQYFDAQGRLLYVGKAKNLRNRVRSYWRFTPTLRPNPDQSPRILKMLHEAAS 68 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST- 116 + + V +E +AL+LE ++IK+LKP++NILLRDDK++PYI + + P R Sbjct: 69 LDYLVVESEADALILENSLIKQLKPKYNILLRDDKTYPYIYLDESQDFPRFELTRKVVRG 128 Query: 117 IQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176 + Y+GPF S +++L F L A + CL QI RC PC G+I+ Sbjct: 129 KKIRYYGPFPSGG--RALLDALYALFPLVQKAG--CLRGKKACLFHQIGRCPAPCEGKIT 184 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + Y + V AK+ + + +++ M Q +E +E A RD++ A+ ++ ++ Sbjct: 185 PDAYRQGVEAAKEAIHNL-PLILKRLEERMMQLAEQERFEEAAKVRDQIEAIRGLEIRSE 243 Query: 237 SIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 D F++ K+ + F G+ + F + + + L F Sbjct: 244 IDLAREEDYDIFAIDPGKDRGVVVRLFMRRGRITASSHSFFRHTEAYEPEEAYAQALLDF 303 Query: 294 YTDKPCPEN--ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 Y ++ ILL E+ LE ++ G K++I P++G K ++ AL NA Sbjct: 304 YREEAPLTAATILLPLALEQREELEKVLSRRLGRKIRILHPQRGPKAQLTRLALTNAAEL 363 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 ++ S ++ + F L P R+E++DNSH+MG + VG MV E + KN Sbjct: 364 LRRETSPTVTPIE--NRIAELFGLERTPWRVEVFDNSHLMGEAPVGAMVAWDEGKWAKNS 421 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YR++ L +D+ M +L+RR K PD+ +LDG Sbjct: 422 YRRYRLE-----ARDEYHQMMEMLQRRIGDFDKE----------------PPPDLWLLDG 460 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAK-----GPKRSAGMEK-FFVKKGEALVLNMRDP 525 G+ A+ +L++ V + +++IAK R+ G + L L+ +DP Sbjct: 461 GETLRRLAEDLLRQAGV--NLPVLAIAKEKLDAKAHRAKGAARDLLHGPAGTLHLDPKDP 518 Query: 526 ILYFIQRLRDEAHRFAITTHR-KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 L ++QRLRDEAHR+AIT HR K+R++ L + GIGP + LL FGT K I ++ Sbjct: 519 RLQWLQRLRDEAHRYAITYHRNKKRREDRQVALLQTKGIGPATLKKLLDCFGTFKAIEKA 578 Query: 585 SPETLASIEGISKKIACKIYNHF 607 TL + G +A ++ Sbjct: 579 DFNTLQKVVG--PTMAKRLIESL 599 >gi|332298590|ref|YP_004440512.1| UvrABC system protein C [Treponema brennaborense DSM 12168] gi|332181693|gb|AEE17381.1| UvrABC system protein C [Treponema brennaborense DSM 12168] Length = 675 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 171/589 (29%), Positives = 267/589 (45%), Gaps = 38/589 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + P GVY G V+YVGKA NL+ R+ SY + ++S+ ++I + T Sbjct: 17 KAPSTSGVYFWKGEDGTVIYVGKAKNLKNRLSSYFSG-QKDIKTQILVSRAHSIEYITTA 75 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 E EA +LE NMIK+ KPR+NI L+D KS+P + +T+ P LYK R YFGP Sbjct: 76 NEYEAFILENNMIKQHKPRYNINLKDGKSYPVLRVTN-EAFPRLYKTRRIMQDGSKYFGP 134 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F V A++ I +L R + LR C R R+ PC+ + I RC PC G+IS+E Y E++ Sbjct: 135 FPDVGALDAFIETLLRLYPLRRCKK--LRTRSAPCMYYHIGRCGAPCCGKISTETYNEYI 192 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241 E ++ L G +K+ M QA +E A RD +AAL ++ N Sbjct: 193 GEIEQILEGKGKETADKLKERMKQAAQDLQFEKAARLRDSIAALDILKPQNIVQDFNPED 252 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D + + L G+ G + + +E+ ++L FL +YTD Sbjct: 253 RDYIAYFCEGELVSFTVLKMRQGKLLGRDNYRTVSLNEAD--ELLGEFLAAYYTDADAIP 310 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII-----EQALINAHRSHTQKL 356 + E L + F +G +I G A NA + Sbjct: 311 PKIFVPTREGLELTKEWFAAAFGAHPEIDTVADGTDNARRHEAALNMAFQNARE-DIARR 369 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 E +++ LPH+P RIE +D +HI G V ++ K YR F Sbjct: 370 VRERGDIPAMEELRDLLGLPHLPVRIEGFDIAHIDGKFPVASLISFYNGNPDKKNYRYFR 429 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 L D DD A MR RR+++L+ + PD++++DGG GQ+ Sbjct: 430 LKTTDGV-IDDFASMREAASRRYTRLLNEQ--------------AEMPDLILIDGGIGQV 474 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 +A +GVLK L+++ I + +AK + E + + L R L +QR+RDE Sbjct: 475 NAVEGVLKALSLD--IPVAGLAKRDE-----EIYRPGNSTPICLPKRSDALRLLQRVRDE 527 Query: 537 AHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 HRFA + +++ R K S + + +R R L+Q+F + + + + Sbjct: 528 THRFATSRNQRLRTKENTVSAFAALPHVAEVRARTLMQTFTSPEKMIGA 576 >gi|152991086|ref|YP_001356808.1| excinuclease ABC subunit C [Nitratiruptor sp. SB155-2] gi|151422947|dbj|BAF70451.1| excinuclease ABC, C subunit [Nitratiruptor sp. SB155-2] Length = 608 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 199/632 (31%), Positives = 311/632 (49%), Gaps = 56/632 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54 + +P+ PGVYQ D GR+LYVGKA +L+KR+KSY + N + RI MI + Sbjct: 7 KLQALPDAPGVYQYFDQNGRLLYVGKAKSLKKRVKSYFRFSPALTPAPNLSPRIFKMIHE 66 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114 N+ + V +E +AL+LE ++IK+LKP++NILLRDDK++PY+ + P + R Sbjct: 67 TKNLEYIVVESENDALILENSLIKQLKPKYNILLRDDKTYPYLYVDFNETFPRIKLTRKV 126 Query: 115 STIQG-SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 YFGPF S A ++ ++SL F L + CL +Q+KRC PC G Sbjct: 127 IRGSNIRYFGPFPS--AAKEIMDSLYELFPLVQ--KESCIKGKKACLFYQMKRCLAPCEG 182 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 +++ ++Y + + EA L + EK+ M + + +E A RDR+ + +Q Sbjct: 183 KVTPKEYAQILDEAIFHLKDKQKLI-EKLQNKMQEYAEQLRFEEAASLRDRIKKIESVQI 241 Query: 234 HNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE--STNAQILSY 288 + + +M D F++ ++ A + F G+ + + D E ++ Sbjct: 242 QSGIDFAKMENLDIFAVEEDEKQAVLVRLFMREGKVISSSSTLYHIDKEKGFDRSEAYKR 301 Query: 289 FLRQFYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 L +FY ++ I+++ + + ++ K++G K+ + P +GEKRKI AL+ Sbjct: 302 ALLEFYQNQTPLTASRIIVAHDFSDRDSVQNYLSKKFGKKITVQHPLRGEKRKIANLALL 361 Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 NA L + I F L H P RIE +DNSHI G + VG MVV Sbjct: 362 NAKE----LLKKRKNQNRIEDIIKSYFHLQHSPYRIEAFDNSHISGSNPVGAMVVYENGK 417 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 FVK+ YR + LH +D+ A M+ +L RR KN PD+ Sbjct: 418 FVKSDYRHYTLH-----HKDEYAQMKELLTRRCESFAKN----------------PPPDL 456 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAK-----GPKRSAGMEKFFVKKGEAL-VL 520 I+DGG+ A +L+ V I +I+IAK R+ G K + + L Sbjct: 457 WIIDGGETLRQLAVDILQSHGVG--IDVIAIAKEKHDAKAHRAKGKAKDILYSAMGVHKL 514 Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVK 579 + D L F Q++RDEAHRFA+ HR++R+K + L +I+GIG + LL +GT + Sbjct: 515 SPVDEKLLFFQKIRDEAHRFALQFHRQKRQKESKLVELLQIDGIGEATLKKLLHFYGTFE 574 Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +S E L + G +K A KI HF K+ Sbjct: 575 RIKKSDFEELKQLVG--EKTAQKILEHFSKHD 604 >gi|189502240|ref|YP_001957957.1| hypothetical protein Aasi_0859 [Candidatus Amoebophilus asiaticus 5a2] gi|189497681|gb|ACE06228.1| hypothetical protein Aasi_0859 [Candidatus Amoebophilus asiaticus 5a2] Length = 598 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 164/619 (26%), Positives = 287/619 (46%), Gaps = 50/619 (8%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN---NHTHRITHMISQINNIRFTV 62 +P+ PG+Y + ++YVGK+ NL+KR+ SY + T + M++ I I FT+ Sbjct: 14 LPDQPGIYLFYNKKDEIIYVGKSINLRKRVSSYFSKSQIKKATPKTQRMVADIQAISFTI 73 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +E +AL+LE N+IK ++P +NILL+ K + YI IT+ + P + R +T G Y+ Sbjct: 74 VDSEYDALVLENNLIKSIRPEYNILLKYGKGYSYICITN-DRFPKVITTRQVNTKLGRYY 132 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCAD-----SVFRHRTRPCLLFQIKRCSGPCTGEISS 177 GPF ++ + + ++ +QR + R+C ++ +H+ R CLL+ I++C GPC G + Sbjct: 133 GPFNNLYYMYQMMDLIQRVYGPRTCNYNLSKQNIKKHKFRVCLLYHIRKCKGPCQGLQTE 192 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 + Y + + L G + +K+ M QA L+ Y+ A ++ +LA+L Q + Sbjct: 193 DAYKLDIAQIDHLLRGNLNKVKKDFKERMQQAALRLAYKEAHDYKMKLASLEAYQAKSLV 252 Query: 238 ---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 +D F + ++ +A I G T +K + IL + F Sbjct: 253 ANPNLGNLDVFGIVSDEEVAFISYLQVKNGATNFAQTIQVKKKLGEADTDILPLIILNFR 312 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HR 350 L L K+ +T PK G+K+K+++ A+ NA Sbjct: 313 EMYNGTAPEALVNVVPLIKLD----------KLTLTSPKIGDKKKLVDLAIKNALFLKKE 362 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 +K + L+ + L + IE ++N+ I + +VV K Sbjct: 363 YLLKKEENQNRPYKTLQLLQQDLQLKSLLLHIEYFNNASIQENNTAAALVVFKNGKPAKR 422 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 +Y+ FN+ V D + ++ RR+ +LI+ + + PD++I+D Sbjct: 423 EYQNFNIRT--VVEPIDLTSVHEIVSRRYKRLIEEK--------------STLPDLIIID 466 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 G QL+ A L+++ + ++ IISIAK + E ++ L+ + P L + Sbjct: 467 GETTQLNVAVQALQEIGIYGQVPIISIAKRLE-----EIYYPGDTYPTCLSKQSPSLKLL 521 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 Q++R+EAHRFAI H + + S L I GIG L+Q F +V I +S ETL Sbjct: 522 QQVRNEAHRFAIGIHHSQFSNISLISQLQNIPGIGNKTVDKLVQQFQSVDNIKAASLETL 581 Query: 590 ASIEGISKKIACKIYNHFH 608 A G S+ A ++ + Sbjct: 582 AEYVGTSR--ATQLKAYLQ 598 >gi|329767011|ref|ZP_08258539.1| excinuclease ABC [Gemella haemolysans M341] gi|328837736|gb|EGF87361.1| excinuclease ABC [Gemella haemolysans M341] Length = 582 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 171/614 (27%), Positives = 275/614 (44%), Gaps = 47/614 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D G ++YVGKA NL+ R+KSY H + ++S+I ++ + Sbjct: 8 KLELLPDNPGCYLYKDNIGEIIYVGKAKNLKNRVKSYFTGT-HNKKTQTLVSKIEDLEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGS 120 + +E EALLLE N+IK+ +P FNI L+DDKS+PY+++T K + P L R + Sbjct: 67 IVNSEKEALLLENNLIKKYRPYFNIRLKDDKSYPYLMVT-KEEHPRLLMTRKYKKSNKNI 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGP+ + + + L + + LR C RPC+ +QI C GPC +I+ ++Y Sbjct: 126 YFGPYVDIKSAMEVKKILDKIYPLRKCNPVE----KRPCMYYQIGECIGPCAKKITPDEY 181 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DS 237 +++ K FL+G + E + M ++E+A + ++ + DS Sbjct: 182 KTQINKIKSFLTGNTKEILEDLNNKMQDHVKNLEFEAAGQIHSYIKSIEVSVQNQVVADS 241 Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D N + CIQ G + + + QIL +L Q+Y Sbjct: 242 NNIDRDYIGYSFNNDYICIQIFLSRLGNIIERKVEYF--NLYDSPDQILYSYLIQYYAMN 299 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P+ I + K+ +PK+G RKI++ NA L+ Sbjct: 300 KLPKEIYID--------EVDDNLLSNVVDCKVIIPKRGNHRKILDTVKENASHYLNNNLA 351 Query: 358 TEISHQMILK---DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 E + L+ + + I+ +DNS+IMG AV V YRK Sbjct: 352 IEELKERKLQVTLNNIAEKLGVKSIDSIDAFDNSNIMGVDAVSVKVNFTNGKKNTYNYRK 411 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F ++ +D M+ VL R + N E ++I+DGGK Sbjct: 412 F--KIDESMGINDVQTMKEVLYRNYKDKKTNTE------------------LLIVDGGKN 451 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 L+AA ++ + ++ II +AK K E E + F+++++ Sbjct: 452 HLNAAIEIVHEKLGLTKVKIIGLAKNDKHIT--EYIITDDYEIIEFPKTSAEYLFLKQIQ 509 Query: 535 DEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR + K S LD I GIG +RK LLL++F +++ I +S E L + Sbjct: 510 DEVHRFAITYHRAIKTKNMYNSSLDNIQGIGKVRKNLLLKTFSSIEEIKEASEERLLKL- 568 Query: 594 GISKKIACKIYNHF 607 GI K + + N+ Sbjct: 569 GIPKDVINNLKNNL 582 >gi|289525835|emb|CBJ15316.1| excinuclease ABC subunit C [Chlamydia trachomatis Sweden2] Length = 579 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 177/603 (29%), Positives = 284/603 (47%), Gaps = 42/603 (6%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVTCTEVEALLLE 73 M D G VLYVGKA NL+ R+ SY+ + RI ++ + +I V E EA+LLE Sbjct: 1 MKDSQGTVLYVGKAKNLRNRLSSYLQKKGDSRERIPFLMKKTTDIDTIVVSNETEAILLE 60 Query: 74 ANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD----SSTIQGSYFGPFASVD 129 N+IK+ +PR+N+LL+DDK+F + ++ +H P + R + FGP+ S + Sbjct: 61 NNLIKKYQPRYNVLLKDDKTFFCLSVSLEHPWPRIEAIRTRALSPGKKKQWLFGPYVSAE 120 Query: 130 AVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKK 189 A + + F LR+C+D F R RPC+L+++KRC PC G S +Y E + +A Sbjct: 121 ACYALLEVISLWFPLRTCSDREFSTRQRPCVLYEMKRCLAPCVGLCSQTEYQETLDKAVL 180 Query: 190 FLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMDCFS 246 FL G + + + + +A+ ++ +E A L + +D Sbjct: 181 FLKGDVRSTISNLEKAIEKASQEQKFEHAAALYRTLTLIRQTMAKQHVEKFQAYDIDVLG 240 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLS 306 LY +LA + + G+ G F +++ +A S+ L+ + + P+ I + Sbjct: 241 LYRKGSLAIVSVLSVYSGKLLGARYFIFPENAQEDSALFSSFILQYYAENPRIPKEIFVP 300 Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366 + L + KI PK ++++ A NA S Sbjct: 301 VSLDSPELP---YLLNTAEPPKIRCPKTEYGKELLALAHKNAAEQAKPF----NSITPPY 353 Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426 ++ F L P RIE YDN+H+ G VG +V F QYR F++ D Sbjct: 354 EELQHFFNLSQYPYRIECYDNAHLQGEHNVGVCIVFENALFSPKQYRTFSI----TSHGD 409 Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486 D A VL RRF L P+++++DGG+ Q AQ +L++L Sbjct: 410 DLAAFEEVLTRRFRSLTTE-----------------LPNLIVIDGGRNQFKRAQRILEEL 452 Query: 487 NVENRITIISIAK---GPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542 N+ IT+++IAK +S EK F + + ++L+ IL F Q LRDEAHRFAI Sbjct: 453 NLTG-ITVVTIAKESGNHSKSLRQEKLFCETFPQGILLHPTSAILQFFQLLRDEAHRFAI 511 Query: 543 TTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 +RK+ KA + +I GIG ++ + LLQ F + K + +S E L +++GI+ K + Sbjct: 512 QHYRKKHAKAVLTT-KKIPGIGEVKTKRLLQKFKSWKRVFIASEEELKTVQGITAKDIQR 570 Query: 603 IYN 605 I Sbjct: 571 IQE 573 >gi|82617200|emb|CAI64107.1| excinuclease ABC, subunit C [uncultured archaeon] gi|268323040|emb|CBH36628.1| excinuclease ABC, subunit C [uncultured archaeon] Length = 520 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 177/554 (31%), Positives = 273/554 (49%), Gaps = 46/554 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+ PG Y D + R++YVGKA NL+KR+KSY N + M+ +I+++ F Sbjct: 5 KNRNIPDNPGCYLFRDSSNRIIYVGKAKNLRKRVKSYFQKNELDPKTEAMVQKIDSVDFI 64 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT EVEAL+LE N+IK+ PR+NI L+D K + YI +T P L R G + Sbjct: 65 VTDNEVEALILENNLIKKHSPRYNIDLKDSKRYAYIKLT-DEDFPRLLIARR-KEGGGKF 122 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPF S A + +++L+++F +R+C R +PCL QI+ C PC G IS +Y Sbjct: 123 FGPFVSAAARDYLLSALRKSFQIRTCK----RMAKKPCLRHQIELCQAPCIGNISKVEYS 178 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 E + + L G + + R M A+ K D+E A++ R+++ A+ ++ Sbjct: 179 ERIRSVELILKGKTNEFIKSKTREMKSASDKLDFERALVLRNQIGAIEQLKEKQLMELQK 238 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D + + + G F T+A L FL Q+Y++ Sbjct: 239 KYDEDIINYITKDGRVYLILFNIYKGILENKQEFVF-----ETSANFLDDFLVQYYSENA 293 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P ++L +E ++ L + V + VPK GE+++++E L N S Sbjct: 294 VPAELILPQEIDDALLS--FLTLKRNGTVNVKVPKVGERKQLLELVLKNIELSFF----- 346 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 S L+ + LP IP IE +D SH+ G S VG MV K+ YR+F + Sbjct: 347 --SEVEALEALKNELNLPEIPAVIESFDISHLSGTSTVGSMVQFQNAKPAKSNYRRFKIK 404 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V DD + V+ RR+++LIK E L PD++++DGG GQL++ Sbjct: 405 T--VDGIDDVGAIAEVVRRRYTRLIKEESEL--------------PDLIVIDGGIGQLNS 448 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A L+KL + I IISIAK + E + L L+ R L I+++RDEAH Sbjct: 449 ALAELRKLGLL--IPIISIAKKFE-----EVYVPGLTFPLRLDRRSKALKLIEQVRDEAH 501 Query: 539 RFAITTHRKRRKKA 552 RFAI+ +R RKK+ Sbjct: 502 RFAISYNRLLRKKS 515 >gi|82617332|emb|CAI64244.1| excinuclease ABC, subunit C [uncultured archaeon] Length = 520 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 177/554 (31%), Positives = 273/554 (49%), Gaps = 46/554 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+ PG Y D + R++YVGKA NL+KR+KSY N + M+ +I+++ F Sbjct: 5 KNRNIPDNPGCYLFRDSSNRIIYVGKAKNLKKRVKSYFQKNELDPKTEAMVQKIDSVDFI 64 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT EVEAL+LE N+IK+ PR+NI L+D K + YI +T P L R G + Sbjct: 65 VTDNEVEALILENNLIKKHSPRYNIDLKDSKRYAYIKLT-DEDFPRLLIARR-KEGGGKF 122 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPF S A + +++L+++F +R+C R +PCL QI+ C PC G IS +Y Sbjct: 123 FGPFVSAAARDYLLSALRKSFQIRTCK----RMAKKPCLRHQIELCQAPCIGNISKVEYS 178 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 E + + L G + + R M A+ K D+E A++ R+++ A+ ++ Sbjct: 179 ERIRSVELILKGKTNEFIKSKTREMKSASDKLDFERALVLRNQIGAIEQLKEKQLMELQK 238 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D + + + G F T+A L FL Q+Y++ Sbjct: 239 KYDEDIINYITKDGRVYLILFNIYKGILENKQEFVF-----ETSANFLDDFLVQYYSENA 293 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P ++L +E ++ L + V + VPK GE+++++E L N S Sbjct: 294 VPAELILPQEIDDALLS--FLTLKRNGTVNVKVPKVGERKQLLELVLKNIELSFF----- 346 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 S L+ + LP IP IE +D SH+ G S VG MV K+ YR+F + Sbjct: 347 --SEVEALEALKNELNLPEIPAVIESFDISHLSGTSTVGSMVQFQNAKPAKSNYRRFKIK 404 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V DD + V+ RR+++LIK E L PD++++DGG GQL++ Sbjct: 405 T--VDGIDDVGAIAEVVRRRYTRLIKEESEL--------------PDLIVIDGGIGQLNS 448 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A L+KL + I IISIAK + E + L L+ R L I+++RDEAH Sbjct: 449 ALAELRKLGLL--IPIISIAKKFE-----EVYVPGLTFPLRLDRRSKALKLIEQVRDEAH 501 Query: 539 RFAITTHRKRRKKA 552 RFAI+ +R RKK+ Sbjct: 502 RFAISYNRLLRKKS 515 >gi|241889559|ref|ZP_04776857.1| excinuclease ABC subunit C [Gemella haemolysans ATCC 10379] gi|241863181|gb|EER67565.1| excinuclease ABC subunit C [Gemella haemolysans ATCC 10379] Length = 582 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 168/614 (27%), Positives = 271/614 (44%), Gaps = 47/614 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D G ++YVGKA NL+ R+KSY H + ++S+I ++ + Sbjct: 8 KLELLPDNPGCYLYKDNIGEIIYVGKAKNLKNRVKSYFTGT-HNKKTQTLVSKIEDLEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD-SSTIQGS 120 + +E EALLLE N+IK+ +P FNI L+DDKS+PY++IT K + P L R + Sbjct: 67 IVNSEKEALLLENNLIKKYRPYFNIRLKDDKSYPYLMIT-KEEHPRLLMTRKYKKNNKNI 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGP+ + + + L + + LR C RPC+ +QI C GPC +I+++ Y Sbjct: 126 YFGPYVDIKSATEVKKILDKIYPLRKCNPVE----KRPCMYYQIGECIGPCAKKITADDY 181 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + + K FL+G + + + + ++E+A + + ++ + + Sbjct: 182 KSQISKIKSFLTGNTKEILTDLQSKLQEHIKNLEFEAAGQIHNYIKSIEVSVQNQVVADS 241 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D N + CIQ G + + T +IL +L Q+Y Sbjct: 242 TNVDRDYIGFTFNNDYICIQIFLSRLGNIIERKVEYF--NLYDTPEEILYSYLLQYYALN 299 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P+ I + K+ +PK+G RKI++ NA L+ Sbjct: 300 KLPKEIYID--------EVDDNLLSDVVDCKVIIPKRGNHRKILDTVKENATYYLNNNLA 351 Query: 358 TEISHQMILK---DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 E + L+ + + + I+ +DNS+IMG AV V YRK Sbjct: 352 IEELKERKLQVTLNNIAEKLGVNSINSIDAFDNSNIMGVDAVSVKVNFTNGKKNTYNYRK 411 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F ++ +D M+ VL R + N E ++I+DGGK Sbjct: 412 F--KIDESMGINDVQTMKEVLYRNYKDRKTNTE------------------LLIVDGGKN 451 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 L+ A V+ +I II +AK K E E + F+++++ Sbjct: 452 HLNVAIDVVHNTLDLKQIKIIGLAKNDKHIT--EYIITDDYEIIEFPKTSAEYLFLKQIQ 509 Query: 535 DEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR + K S LD+I GIG +RK LLL+SF +++ I + E L + Sbjct: 510 DEVHRFAITYHRATKNKNMYKSSLDDIQGIGKVRKNLLLKSFSSLEEIKNAPDEKLLKL- 568 Query: 594 GISKKIACKIYNHF 607 GI K + + Sbjct: 569 GIPKDVIKNLKKRL 582 >gi|166154133|ref|YP_001654251.1| excinuclease ABC subunit C [Chlamydia trachomatis 434/Bu] gi|166155008|ref|YP_001653263.1| excinuclease ABC subunit C [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|165930121|emb|CAP03604.1| excinuclease ABC subunit C [Chlamydia trachomatis 434/Bu] gi|165930996|emb|CAP06558.1| excinuclease ABC subunit C [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 579 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 177/603 (29%), Positives = 286/603 (47%), Gaps = 42/603 (6%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVTCTEVEALLLE 73 M D G VLYVGKA NL+ R+ SY+ + RI ++ + +I V E EA+LLE Sbjct: 1 MKDSQGTVLYVGKAKNLRNRLSSYLQKKGDSRERIPFLMKKTTDIDTIVVSNETEAILLE 60 Query: 74 ANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS----TIQGSYFGPFASVD 129 N+IK+ +PR+N+LL+DDK+F + ++ +H P + R + + FGP+ S + Sbjct: 61 NNLIKKYQPRYNVLLKDDKTFFCLSVSLEHPWPRIEAIRTRALSPGKKKQWLFGPYVSAE 120 Query: 130 AVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKK 189 A + + F LR+C+D F R RPC+L+++KRC PC G S +Y E + +A Sbjct: 121 ACYALLEVISLWFPLRTCSDREFSTRQRPCVLYEMKRCLAPCVGLCSQTEYQETLDKAIL 180 Query: 190 FLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMDCFS 246 FL G + + + + +A+ ++ +E A L + +D Sbjct: 181 FLKGDVRSTISNLEKAIEKASQEQKFEHAAALYRTLTLIRQTMAKQHVEKFQAYDIDVLG 240 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLS 306 LY +LA + + G+ G F +++ +A S+ L+ + + P+ I + Sbjct: 241 LYRKGSLAIVSVLSVYSGKLLGARYFIFPENAQEDSALFSSFILQYYAENPRIPKEIFVP 300 Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366 + L + KI PK ++++ A NA S Sbjct: 301 VSLDSPELP---YLLNTAEPPKIRCPKTEYGKELLALAHKNAAEQAKPF----NSITPPY 353 Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426 ++ F L P RIE YDN+H+ G VG +V + F QYR F++ D Sbjct: 354 EELQHFFNLSQYPYRIECYDNAHLQGEHNVGVCIVFENDLFSPKQYRTFSI----TSHGD 409 Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486 D A VL RRF L P+++++DGG+ Q AQ +L++L Sbjct: 410 DLAAFEEVLTRRFRSLTTE-----------------LPNLIVIDGGRNQFKRAQRILEEL 452 Query: 487 NVENRITIISIAK---GPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542 N+ IT+++IAK +S EK F + + ++L+ IL F Q LRDEAHRFAI Sbjct: 453 NLTG-ITVVTIAKESGNHSKSLRQEKLFCETFPQGILLHPTSAILQFFQLLRDEAHRFAI 511 Query: 543 TTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 +RK+ KA + +I GIG ++ + LLQ F + K + +S E L +++GI+ K + Sbjct: 512 QHYRKKHAKAVLTT-KKIPGIGEVKTKRLLQKFKSWKRVFIASEEELKTVQGITAKDIQR 570 Query: 603 IYN 605 I Sbjct: 571 IQE 573 >gi|254994840|ref|ZP_05277030.1| excinuclease ABC subunit C [Anaplasma marginale str. Mississippi] Length = 563 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 201/557 (36%), Positives = 313/557 (56%), Gaps = 32/557 (5%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 GVY+ML G VLYVGKA +L+KR++SY + N + RI M+ I + VT +E EAL Sbjct: 32 GVYKMLGANGLVLYVGKAKDLKKRLRSYYNFNQMSDRILAMVGHITELDVIVTQSEAEAL 91 Query: 71 LLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFGPFASVD 129 LLEA +IK LKP++NI++RDDK +PYIL++ KH+ P + K+R G +GPF S Sbjct: 92 LLEAQLIKTLKPKYNIIMRDDKFYPYILLS-KHEYPRIVKYRGRKEAGLGKCYGPFISSL 150 Query: 130 AVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKK 189 V+ I++L++ F LRSC+D+ F R RPC+ ++++ CS PCT +IS E Y + VH A K Sbjct: 151 VVKLVISALRKAFQLRSCSDNFFASRDRPCIEYEMRNCSAPCTRKISEEDYAKSVHMAHK 210 Query: 190 FLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA---ALSHIQNHNDSIYNRMDCFS 246 L+G + L+ ++ +M + + DYESA+++RDRL ++ + + D S Sbjct: 211 VLTGKSKELQRELFDSMRKFSDNLDYESAMVYRDRLQALKSIQECVSFQTEMSCDADFVS 270 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLS 306 +Y C+Q F G + G+ +F+ + + + +L F+ Q Y+D P + + Sbjct: 271 IYGRSGTYCLQVISFRGGISYGSQPYFVDDGNYESESDVLGMFMLQVYSD--PPGRVYVD 328 Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366 E++ ++ + + KV I K E+ K + A +A + ++L + L Sbjct: 329 CESDYCEVINAALERLLTRKVDILTAKSHEELKFLRLARNSAMEALNRRLRDKA-LPAEL 387 Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426 ++ + F LP+ P+RIE+YDNSHI G G MVV G++G ++ +YRKF + V D Sbjct: 388 EELAELFGLPNPPERIEVYDNSHISGTHPFGVMVVCGKDGLLRKEYRKFKIQT--VLNGD 445 Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486 D +MM VL RRFS PS PD V++DGG+G +S+A VL L Sbjct: 446 DYSMMHEVLFRRFS-----------------EESPSVPDFVLIDGGRGHISSAIQVLGDL 488 Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546 I +AKG R+AG E F++ G + L+ ++ +++++RDEAHRFAIT+HR Sbjct: 489 G----IPFACMAKGSNRNAGEEVFYLPDGRKICLDPDSKLMLYMRKIRDEAHRFAITSHR 544 Query: 547 KRRKKAAYS-PLDEING 562 R + S L +I G Sbjct: 545 SSRDRTLSSAVLCDIPG 561 >gi|257464244|ref|ZP_05628623.1| excinuclease ABC subunit C [Fusobacterium sp. D12] gi|317061762|ref|ZP_07926247.1| excinuclease ABC subunit C [Fusobacterium sp. D12] gi|313687438|gb|EFS24273.1| excinuclease ABC subunit C [Fusobacterium sp. D12] Length = 590 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 180/612 (29%), Positives = 291/612 (47%), Gaps = 39/612 (6%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PGVY M +++YVGKA NL KR+KSY + ++ I++I + + Sbjct: 7 NIPENPGVYLMK-EKNKIIYVGKAKNLYKRVKSYFQKEVDREKTRELVKHIDDIEYILCP 65 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST---IQGSY 121 +E++ALLLE N+IK+ P++NI L+D+K++PY+ ++ K PAL+ R + Y Sbjct: 66 SELDALLLENNLIKKYNPKYNIALKDEKTYPYLSLS-KETFPALHMIRKTKHLDLEHYEY 124 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ K L + F +R C ++ + RPCL + +K C GPC + E+Y Sbjct: 125 FGPYP--FGAWKLKKILLKLFKVRDCFWNMNKKYKRPCLKYDMKTCLGPCVHKEVREEYQ 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 E V + ++ L G + + M + +E AI+ R+++ LS+++ S Y Sbjct: 183 EMVAKVRQILKGNTRECIQGLRSAMEEMAETFQFEKAIVLREQIQELSNLEKEQISEYGK 242 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F + G+ G + E + L +Y P Sbjct: 243 EIDEDVFVWKEVYERMFLCVLNVREGKILGKISSNFLL-EEKVYENLEEELLLSYYRKYP 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRK--IIEQALINAHRSHTQKL 356 P++I+L E+ ++ IS + K + + R+ ++ AL+N + Sbjct: 302 LPKSIVLEEKYQQVLEEGISHLEMLFEKKIERYFPKIKSRRGELLNMALLNLEKDIENFH 361 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + + +K+ L H P+RIE +D S+I G AV M V E K +YRKF Sbjct: 362 LKKEVIEEGMKELYSFLGLKHFPRRIECFDISNIQGKDAVASMSVSIEGKAAKGEYRKFK 421 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + D DD AMMR V+ RR+S+L + +PDV+++DGG GQ+ Sbjct: 422 IQCKDTP--DDFAMMREVIYRRYSKLEAKD----------------FPDVILIDGGLGQI 463 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 ++A VL++L ++S+AK + E + +G + L QR+RDE Sbjct: 464 NSAGAVLEELGKIQFTDLLSLAKRDE-----EVYKYGEGLPYSIPKDKEALKIFQRVRDE 518 Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 AHRF IT HRK R K S LD I GIG +RK+ LL+ F +V + ++ E L + Sbjct: 519 AHRFGITYHRKLRSKRVISSELDTIEGIGEVRKKKLLKKFSSVAGVKAATLEELEEC--V 576 Query: 596 SKKIACKIYNHF 607 K +A +I Sbjct: 577 PKNVAIRIKEEL 588 >gi|224418910|ref|ZP_03656916.1| excinuclease ABC subunit C [Helicobacter canadensis MIT 98-5491] gi|253827863|ref|ZP_04870748.1| excinuclease ABC subunit C [Helicobacter canadensis MIT 98-5491] gi|313142424|ref|ZP_07804617.1| UvrABC system protein C [Helicobacter canadensis MIT 98-5491] gi|253511269|gb|EES89928.1| excinuclease ABC subunit C [Helicobacter canadensis MIT 98-5491] gi|313131455|gb|EFR49072.1| UvrABC system protein C [Helicobacter canadensis MIT 98-5491] Length = 612 Score = 396 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 195/628 (31%), Positives = 312/628 (49%), Gaps = 56/628 (8%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQI 55 +++P GVY D GR+LYVGKA NL+ R+KSY + N + RIT M+SQI Sbjct: 19 LKKLPNQSGVYHYFDSEGRLLYVGKAKNLKNRVKSYFRFTPKLSVAPNLSARITQMVSQI 78 Query: 56 NNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS 115 +R+ V E +AL+LE + IK+LKP++NILLRDDK++PY+ + P + R Sbjct: 79 AFMRYIVVENENDALILENSFIKQLKPKYNILLRDDKTYPYLCVDMSVDFPRIVLTRKIL 138 Query: 116 TIQG-SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE 174 YFGP++S ++SL F L + CL +QIKRC PC G+ Sbjct: 139 KSSNIRYFGPYSSG--ARDLLDSLYEVFTLAQ--KESCLKGKKACLFYQIKRCLAPCEGK 194 Query: 175 ISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234 +S E Y E + +A + + + + + M + +E A++ RDR++ + I Sbjct: 195 VSKEAYQEILQKALECIHNPKK-ILSILEKKMEFLSENLRFEEAMVLRDRISKIKQINPL 253 Query: 235 NDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLR 291 + + +D F+L N + F G+ + T +K+ E ++ + L Sbjct: 254 SSVDFARVEDLDIFALESEGNRGVLVKFFVREGRVVSSATNVIKSQYEINFEEVYTQSLI 313 Query: 292 QFYTDKPC--PENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA 348 +Y+ P+ +L+ + E+ LE KQ G K+ I PK G+K+K+ + AL NA Sbjct: 314 NYYSKTLPIKPKQVLIPYDFGEKREELEAFLAKQLGKKIPIHFPKSGDKKKLCDLALQNA 373 Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 + + + + +L + F+L IP +IEI+D SH G VG MVV E F+ Sbjct: 374 RETLKINV---TNEEALLLALKELFSLQSIPYKIEIFDTSHHRGKQCVGAMVVYEEG-FI 429 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 K R + ++ D+ + MR +LERR ++S S PD+ + Sbjct: 430 KESCRHY-----LLEGSDEYSQMREMLERRI----------------ADFSTDSPPDLWV 468 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAK-----GPKRSAG--MEKFFVKKGEALVLN 521 LDGG GQ++ A+ +L V + +I IAK R+ G ++ +K + L+ Sbjct: 469 LDGGIGQINLAKDLLNSAGV--NLEVIGIAKEKLDAKAHRAKGSALDILRDEKRQEYRLS 526 Query: 522 MRDPILYFIQRLRDEAHRFAITTH-RKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580 D L F+Q+LRDEAHRFAIT H ++++K S + EI G+G ++ LL FG+ + Sbjct: 527 SSDKRLQFLQKLRDEAHRFAITFHQKQKQKTMQQSKVLEIKGVGKATQKRLLSYFGSFEA 586 Query: 581 ISRSSPETLASIEGISKKIACKIYNHFH 608 I +S E L + +SK +A +Y Sbjct: 587 IKEASLEELEKV--LSKNLAKSVYESLK 612 >gi|327398979|ref|YP_004339848.1| UvrABC system protein C [Hippea maritima DSM 10411] gi|327181608|gb|AEA33789.1| UvrABC system protein C [Hippea maritima DSM 10411] Length = 600 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 173/617 (28%), Positives = 293/617 (47%), Gaps = 43/617 (6%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +P+ PGVY + +LYVGKA +L+ R+KSY++ +I + ++ Sbjct: 15 KDIPKFPGVYIIFSSNDEILYVGKAKSLRDRLKSYLNPKEMYALKVSLIEEACSVEIITV 74 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E+EALLLE+N+IK +P +NI+LRDDKS+PY+ I+ + P L+ R + YFG Sbjct: 75 NSELEALLLESNLIKEYRPPYNIVLRDDKSYPYLRISFSERFPRLWIARRIKNKKDFYFG 134 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P D ++ I L+ +F + D + + C+ +Q+ +C PC G IS E Y++ Sbjct: 135 PITPADKLKTLIKLLKNSFKIAQKNDKQCQGSSSACIYYQMGKCLAPCIGNISQEDYLKI 194 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD 243 + E K L+ +K+++ +N + ++E AI RD+L A+ ++N D Sbjct: 195 IEEIKHILTNPKK-IKKQLLDELNGYIERLEFEKAIQVRDKLKAIELLENKQSVSEIGED 253 Query: 244 CFSLYHNKNL---ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 + + C+ F G T+F TDS + + P Sbjct: 254 FCDVITFERSGVVVCVYIMSIRFSNVVGNRTYFFYTDSIDDGFKESFIVQYYLNQQQVIP 313 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +L+ E L + V + PK+G +++++E A NA + ++ Sbjct: 314 DVLLVDEGLNHLILKDA---LANQKSVDVIAPKKGARKRLLELAKKNAKMNLDIHMNQFK 370 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 + +L+ K L P I++ D SH + VG +V +GF ++ YR++ L Sbjct: 371 HNIDMLEKLKKALNLAKTPYFIDVADISHTGFENVVGGVVRYTVSGFDRSMYRRYKLDAK 430 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 + M +L R L+ S D++++DGG Q++ A+ Sbjct: 431 F-----EKEAMFEMLSRHKRLLLN--------------SAHKLADLILVDGGMVQVNTAK 471 Query: 481 GVLKKLNVENRITIISIAK-----GPKRSAG--MEKFFVKKGEALVLNMRDPILYFIQRL 533 V K L +I I+K KRS G ++ + + G V+ + +L F+Q+L Sbjct: 472 EVFKNL------PVIGISKEKIDGKAKRSLGDVKDRIYSENG---VVEVDGEVLSFLQKL 522 Query: 534 RDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 RDE HRFAI HRK+R+ S LD I IGP RK+ L + FG++ I +S E ++S+ Sbjct: 523 RDEVHRFAIEYHRKKREDYVLASALDRIEFIGPKRKKALFEKFGSIDNIKTASIEEISSV 582 Query: 593 EGISKKIACKIYNHFHK 609 +GIS+KIA I + Sbjct: 583 KGISRKIASIIKEKLKE 599 >gi|325294967|ref|YP_004281481.1| UvrABC system protein C [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065415|gb|ADY73422.1| UvrABC system protein C [Desulfurobacterium thermolithotrophum DSM 11699] Length = 583 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 170/611 (27%), Positives = 278/611 (45%), Gaps = 39/611 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+ PGVY D +G+V+YVGKA +L+ R+ ++++ N + + + + Sbjct: 4 KLQTVPDAPGVYFFKDKSGKVIYVGKAKSLKNRLSTHINCTNPNEKSYKITKNAVDFDYI 63 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V E EAL LEA +IK+ P+FN+LL+DDKS+PY+++T + P + R ++G Sbjct: 64 VVKNEKEALTLEAELIKKYLPKFNVLLKDDKSYPYLVLT-DEEFPTVKIVRKKDCLKGKK 122 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPF + + + F LR C + +R++PCL + I+ C+ PC +S + Y Sbjct: 123 FGPFVPPKNARNLKDLIHKVFKLRKCKE--LLNRSKPCLQYYIEMCTAPCCNYVSKKDYR 180 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + V A FL+G N K+ + +A +E A I RD+L A+ I + Sbjct: 181 KQVEGALSFLTGNVKNHINKLYSEIEKAAENLQFEKAAILRDQLIAIKDIYEKGSIFFEN 240 Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F + N + G G F +L + + Sbjct: 241 YPSCDVFYIERNNGIFSGVKLTVRNGILYGKENFQFDPLDPWDENLLLEFSNYRLEQIDE 300 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 + + E F + Y K+ ++ + + N + T Sbjct: 301 SIVGTIWIKGTYEEENPPKEIFANFHYLGNEFSVKEIPEKVL-QLVKKNRSIARTNLNLE 359 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + LK + L P+R+E++DNS + G ++VG +V + FVK YR++ + Sbjct: 360 K------LKFEYESVFLDTFPERVEVFDNSSLQGTASVGACIVWEKGEFVKKDYRRYKIK 413 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 +VK +D + VL RRF ++ K E P++V++DGG GQL+ Sbjct: 414 --NVKGINDYGFLEEVLTRRFKRIKKGE--------------VKRPNLVLIDGGIGQLNV 457 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A V L ++ R + SIAK E + GE + + F LRDEAH Sbjct: 458 ALKVRDSLGLDFR--VFSIAKRE------EIVYTDDGEVVETKKYPYLFRFFTSLRDEAH 509 Query: 539 RFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAIT +RK R S LD+I GIG RK+LL + + +K ++ +S E L I GI + Sbjct: 510 RFAITFNRKLRNSLMVKSVLDDIKGIGTKRKKLLEKFYPDIKELAEASIEELVKI-GIPR 568 Query: 598 KIACKIYNHFH 608 K+A ++ Sbjct: 569 KVAKEVLEKIR 579 >gi|281412321|ref|YP_003346400.1| excinuclease ABC, C subunit [Thermotoga naphthophila RKU-10] gi|281373424|gb|ADA66986.1| excinuclease ABC, C subunit [Thermotoga naphthophila RKU-10] Length = 557 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 166/602 (27%), Positives = 285/602 (47%), Gaps = 58/602 (9%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 PE PGVY D G +Y+GKA L R++SY+ N T ++ +I + + + V E Sbjct: 13 PEEPGVYIFKDK-GVPIYIGKAKILSNRLRSYL--NPQTEKVLRIIEEADELETIVVMNE 69 Query: 67 VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126 EA +LEAN+IK+ +P++N+ L+D +PYI I+D IP + + +G+YFGP+ Sbjct: 70 REAFILEANLIKKYRPKYNVRLKDTDFYPYIRISDDE-IPYVEIV-KRRSKEGTYFGPYT 127 Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186 SV V+ + LQ+ R+C S R RPC L+ + RC+GPC G + E + E + Sbjct: 128 SVQFVKNLLEILQKIMGFRTCK-SDLRRIKRPCFLYHLGRCTGPCIGNV--ESHEEAIRR 184 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFS 246 K+FLSG + + + M + D+E+A +RD L LS++ ++ Sbjct: 185 LKEFLSGNMGEVFDYLKEKMETHSKMLDFENAAKYRDLLLNLSNVLESQGVVFEESISCD 244 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLS 306 + + + G G +F ++ + + R P+ ++L Sbjct: 245 VLVHAHDL-FVVLRVRNGYLVGKISFEMEGGNVEDFIREYYVSGRG-----DIPKTLILE 298 Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366 + +E Y + E L A ++ +L + L Sbjct: 299 SDLDEMD-----------YSSLGFEYVGPPRSTTEEDLLEKAKKNLENELKMRGLRKEAL 347 Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426 ++ K + P RIE D SH+ G V +VV + K+ YR++ + + D Sbjct: 348 EELMKLLNMKDFPYRIEGIDISHLQGKYTVASLVVFEDGFPKKSDYRRYKIEQDH---PD 404 Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486 D +R V++RR+S+ P+++ +DGG GQ++AA LK++ Sbjct: 405 DYESIRTVVKRRYSK-------------------HPLPNLLFVDGGIGQVNAAVEALKEI 445 Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546 + ++ +AK E+ V + + L P+L + ++RDE HRFA++ HR Sbjct: 446 GKDC--PVVGLAKK-------EETVVFENREIKLPHDHPVLRLLVQIRDETHRFAVSYHR 496 Query: 547 KRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 KRR+K + S LD + GIGP+RK+ L++ FG+++ I +S E +A + G S +IA +I + Sbjct: 497 KRREKESLRSVLDSVPGIGPIRKKKLIEYFGSLENIRSASLEEIARVIG-SAEIAKRILD 555 Query: 606 HF 607 Sbjct: 556 AL 557 >gi|317495219|ref|ZP_07953589.1| excinuclease ABC [Gemella moribillum M424] gi|316914641|gb|EFV36117.1| excinuclease ABC [Gemella moribillum M424] Length = 582 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 175/614 (28%), Positives = 276/614 (44%), Gaps = 47/614 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R+KSY + H + ++S+I ++ + Sbjct: 8 KLESLPSNPGCYLYKDNIGEIIYVGKAKNLKNRVKSYFTGS-HNKKTQILVSKIEDLEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD-SSTIQGS 120 + +E EAL+LE N+IK+ +P +NI L+DDKS+PY++IT K + P L R + Sbjct: 67 IVNSEKEALILENNLIKKYRPYYNIRLKDDKSYPYLMIT-KEEHPRLVLTRKYKKNNKNI 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGP+ + + L + + LR C RPC+ +QI C GPC EIS E+Y Sbjct: 126 YFGPYVDSKSASRVKQILDKIYPLRRCNPVE----KRPCMYYQIGECIGPCAKEISQEEY 181 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + + + + FL+G + ++ M ++ESA D + ++ + + Sbjct: 182 KKQIAKIRSFLNGDTKEILNDLSEKMKNHINNLEFESAAQIHDFIKSIEVSIENQVVSDS 241 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D +N CIQ G + QI+ +L Q+YT Sbjct: 242 GKIDRDYIGFCYNSEYICIQIFISRLGNIIERKVEYF--SLYDKPEQIVYSYLMQYYTVN 299 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P+ I ++ E LL VK +PK+G RKI++ NA L Sbjct: 300 KLPKEIYIN--IENIDLLSEVI------GVKTIIPKRGTHRKILDTVEENAKYFLNNNLE 351 Query: 358 TEISHQMILK---DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 TE + L+ + + + I+ +DNS+IMG AV V +YRK Sbjct: 352 TEELKERKLQVTLNNIAEKLGVNSINSIDAFDNSNIMGVDAVSVKVNFTNGKKNPYKYRK 411 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 F + + +D M+ VL R + N E ++I+DGGK Sbjct: 412 FKVKET--QGINDVGTMKEVLYRNYKNGKTNTE------------------LLIIDGGKS 451 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 L+AA ++ + II + K K E E + + + F ++++ Sbjct: 452 HLNAAIEIVHDKLKLYDVKIIGLVKNDKHIT--EYIITDDYEIIEFSKKSAEYLFFKQIQ 509 Query: 535 DEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE HRFAIT HR + K S LD I+GIG RK++LL+SF +++ I + E L + Sbjct: 510 DEVHRFAITYHRATKTKNMFTSSLDNISGIGKARKQVLLKSFSSIEEIKNAREEKLIEL- 568 Query: 594 GISKKIACKIYNHF 607 GI K I K+ Sbjct: 569 GIPKNIVKKLKTEL 582 >gi|289581743|ref|YP_003480209.1| excinuclease ABC, C subunit [Natrialba magadii ATCC 43099] gi|289531296|gb|ADD05647.1| excinuclease ABC, C subunit [Natrialba magadii ATCC 43099] Length = 604 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 179/639 (28%), Positives = 288/639 (45%), Gaps = 78/639 (12%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PGVYQ G LYVGKA +L+ R+ SY ++ + RI+ MI + + + V Sbjct: 10 ARSLPREPGVYQFQ-ADGTTLYVGKAVDLRSRVGSY--ADPRSARISRMIDRADAVEIAV 66 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE +ALLLEAN+IKR +PR+N+ L+DDKS+P + +T H P + RD S + F Sbjct: 67 TDTETQALLLEANLIKRHQPRYNVRLKDDKSYPMVQLT-DHPAPQIEITRDPSE-SATVF 124 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + VE + +L+ T+ +R C+D + R RPCL +++ C+ PCT EI E Y E Sbjct: 125 GPYTNKRQVETVVKALRETYGVRGCSDHKYSGRDRPCLDYEMGLCTAPCTREIELETYAE 184 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN------HND 236 V ++F G L + + R M A ++ +E A RDRL + + Sbjct: 185 DVTAVERFFEGETGILTDPLRREMETAAQEQHFERAANLRDRLETVEAFHGEGGEAVQSV 244 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQIL---------- 286 +D + A + G+ L+ T A Sbjct: 245 GDERAVDVLGVAIEGEDATVARLRAESGKLVDRERHTLEAPGAGTEAGAEAKTAAAGDGG 304 Query: 287 ------------------SYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVK 328 + F+ Q+Y ++ P+ +LL E + + + V Sbjct: 305 LAAGAETADSQGGVPAVLAAFIVQYYAERDLPDALLLPERHNDDEVSTWLDAEG----VA 360 Query: 329 ITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNS 388 + VP G + K+++ AL NA R+ ++ + L RIE +D S Sbjct: 361 VRVPGAGREAKLVDLALKNARRNVGRRDECGM--------LADALNLDTAR-RIEGFDVS 411 Query: 389 HIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEEN 448 H G +AVG V + K YR+ L DD MR +LE R S+ +++ ++ Sbjct: 412 HAQGTAAVGSNVTFVDGSAEKADYRRKKLTDQ----NDDYDNMRALLEWRASRAVEDRDD 467 Query: 449 LNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGME 508 +DGG+GQL AA+ L + + + I++AK E Sbjct: 468 RPDPDLLL------------IDGGEGQLEAARDALSAVGWD--VPAIALAKAE------E 507 Query: 509 KFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRK 568 + + L P L+ +QR+RDE+HRFA+ H+ R + LD++ GIGP + Sbjct: 508 TVIIPDRQ-LSWPSDAPHLHLLQRVRDESHRFAVQYHQTLRD-DVRTVLDDVPGIGPETR 565 Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + LL FG+V+ + +S E L S+ G+ +K A + Sbjct: 566 KRLLGRFGSVENVREASVEDLQSVSGVGEKTARTVKERL 604 >gi|148269795|ref|YP_001244255.1| excinuclease ABC subunit C [Thermotoga petrophila RKU-1] gi|189038126|sp|A5IKF6|UVRC_THEP1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|147735339|gb|ABQ46679.1| Excinuclease ABC subunit C [Thermotoga petrophila RKU-1] Length = 557 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 163/602 (27%), Positives = 282/602 (46%), Gaps = 58/602 (9%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 PE PGVY + G +Y+GKA L R++SY+ N T ++ ++ + + + V E Sbjct: 13 PEEPGVYIFKNK-GVPIYIGKAKRLSSRLRSYL--NPQTEKVFRIVEEADELETIVVMNE 69 Query: 67 VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126 EA +LEAN+IK+ +P++N+ L+D +PYI I+D IP + + +YFGP+ Sbjct: 70 REAFILEANLIKKYRPKYNVRLKDTNFYPYIRISDDE-IPYVEIVKRKLRDG-TYFGPYT 127 Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186 SV V + LQ+ R+C S + RPC L+ + RC+GPC G + E + E V Sbjct: 128 SVQFVRNLLEILQKIMGFRTCK-SDLKRIKRPCFLYHLGRCTGPCIG--NIESHGEAVRR 184 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFS 246 K+FLSG + + + M + D+E+A +RD L LS++ ++ Sbjct: 185 LKEFLSGNMEEVFDYLKEKMETHSRMLDFENAAKYRDLLLNLSNVLESQGVVFEESISCD 244 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLS 306 + + + G G +F ++ + + R P+ ++L Sbjct: 245 VLVHAHDL-FVVLRVRNGYLVGKISFEMEGGNVEDFIREYYVSGRG-----DIPKTLILE 298 Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366 + +E Y + E L A ++ +L + L Sbjct: 299 SDLDEMD-----------YSSLGFEYVGPPRSTTEEDLLEKAKKNLENELKMRGLRKEAL 347 Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426 ++ K + P RIE D SH+ G V +VV + K+ YR++ + + D Sbjct: 348 EELMKLLNMKDFPYRIEGIDISHLQGKYTVASLVVFEDGFPKKSDYRRYKIEQDH---PD 404 Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486 D +R V++RR+S+ P+++ +DGG GQ++AA LK++ Sbjct: 405 DYESIRTVVKRRYSK-------------------HPLPNLLFVDGGIGQVNAAVEALKEI 445 Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546 + ++ +AK E+ V + + L P+L + ++RDE HRFA++ HR Sbjct: 446 GKDC--PVVGLAKK-------EETVVFENREIKLPHDHPVLRLLVQIRDETHRFAVSYHR 496 Query: 547 KRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 KRR+K + S LD + GIGP+RK+ L++ FG+++ I +S E +A + G S +IA +I + Sbjct: 497 KRREKESLRSVLDSVPGIGPIRKKKLIEYFGSLENIRSASLEEIARVIG-SAEIAKRILD 555 Query: 606 HF 607 Sbjct: 556 VL 557 >gi|301165884|emb|CBW25457.1| UvrABC system protein C [Bacteriovorax marinus SJ] Length = 620 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 156/633 (24%), Positives = 271/633 (42%), Gaps = 50/633 (7%) Query: 2 SSEQMPECPGVYQMLDIAGR---VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNI 58 ++ +P PG Y M G +LYVGKA NL+KR+ SY ++++ + + ++S IN+ Sbjct: 8 KAKTLPNKPGCYLMKKAKGTDEIILYVGKAKNLRKRVSSYFNNSSKSPKTEILVSHINDF 67 Query: 59 RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118 F +T T+ EA +LE N+IK+ P++NI L+DDKS+PYI++ P L R S + Sbjct: 68 DFIMTDTDSEAFVLENNLIKKHSPKYNIRLKDDKSYPYIIVNLNEDFPRLVYERRPSKKK 127 Query: 119 GSY-FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 G FGPF + + + L ++F LR C+ F R PCLL+Q+K+CS PC I+ Sbjct: 128 GQLVFGPFVVGSNISEVLRVLTKSFNLRDCSLKEFNSRKEPCLLYQMKQCSAPCVDLINK 187 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN---- 233 Y + + A F G + M + E +E A + RD + L Sbjct: 188 SDYSKDLDLALSFFRGSGREGVLALEEKMFKYAELEQFERAALLRDNIEILKTFLEGSKQ 247 Query: 234 ---HNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNR-GTCTFFLKTDSESTNAQILSYF 289 S +D + + + I G F D + ++ + Sbjct: 248 TNAEISSSVKNIDIVAYHVGEVEIDISLYMMREGVLLGHKNFHFPAIDCSDSYDDEVAQY 307 Query: 290 LRQFYTD--KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347 + Q+Y+ P+ ++ + E +L F+Q + +++ + + Sbjct: 308 IFQYYSSTFDKMPDRVITNFSNEINEVLSK-AFEQVHEIKVKCTGAGRKFNSLMKLTMDH 366 Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 A ++ E S + L L P +E YD + G S +V + Sbjct: 367 AFEHQRVRILNEDSTYIGLNRLKDLLGLRERPVVLECYDIAIFQGKSPTASQIVFTDGRA 426 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 K++YR F+L + +D AMM V+ RR + + PD+ Sbjct: 427 DKSKYRHFHLEERP-EGNNDFAMMSEVINRRIKK-------------------GNLPDIF 466 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAK-----------GPKRSAGMEKFFVKKGE 516 ++DGG GQ++ G LK NVE + ++ IAK + Sbjct: 467 VVDGGIGQVNIFLGALKDHNVE--VPVVGIAKSKVSKKSTFKSKEVERTDERLIIPGRSN 524 Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAIT-THRKRRKKAAYSPLDEINGIGPLRKRLLLQSF 575 L+ + + ++RDEAHRF+ H++ ++K S +D++ G+GP+ K+ ++ Sbjct: 525 PFQLSKCKSLFRILTQMRDEAHRFSRRLHHKEEKRKLISSWIDQVEGVGPITKKKIISRL 584 Query: 576 -GTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +V + + + S +SKK+A I Sbjct: 585 DKSVSELKLMNERDIESYFEVSKKVAKAIVKTL 617 >gi|157737038|ref|YP_001489721.1| excinuclease ABC subunit C [Arcobacter butzleri RM4018] gi|189038019|sp|A8ESX8|UVRC_ARCB4 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|157698892|gb|ABV67052.1| excinuclease ABC, subunit C [Arcobacter butzleri RM4018] Length = 616 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 189/638 (29%), Positives = 307/638 (48%), Gaps = 64/638 (10%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54 +Q+P GVYQ D G +LY+GKA L+ R+KSY ++ + RI MIS+ Sbjct: 6 KLQQLPNDAGVYQYFDKNGHLLYIGKAKILKNRVKSYFKFTPKLQPADKLSPRIYKMISE 65 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114 + + + V E +AL+LE ++IK+LKP++NILLRDDK++PYI + P L R Sbjct: 66 VESCEWIVVPNEHDALILENSLIKQLKPKYNILLRDDKTYPYIFVDFDEDFPRLDITRRI 125 Query: 115 STIQG-SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 + YFGP++ ++S+ L V + CL +QI++C PC Sbjct: 126 QKSKSIKYFGPYS--TGARDMLDSIYEIVPLVQKKSCV--KGKKACLFYQIQKCLAPCEN 181 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 +IS E+Y + V A +++ + + + M Q + +E A+ RDR+ + Q Sbjct: 182 KISKEEYAKIVENALEYIYNKTKLISK-LNEKMLQYSNDFRFEEAMTLRDRIKTIEKSQI 240 Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQI----- 285 +D +D F++ N A I F G+ + FLK D+ + Sbjct: 241 KSDIDLATNEDIDIFAINANNKKAVIVRMFLRDGKLTSSSHDFLKIDNFDEEFEFDYQEA 300 Query: 286 LSYFLRQFYTDKPC--PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQ 343 + +Y ++ P+ IL++ E E T+ LE ++ K+K+ PK+ +KR+I+ Sbjct: 301 YERAIINYYDNEIPLLPKEILIAHELEITNELEEFLHTRFNKKIKLINPKKDKKREIVNI 360 Query: 344 ALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVG 403 AL N ++ + I ++ + F L +P IE +DNSH+MG + VG M+V Sbjct: 361 ALNNCDE--LLRIENSKNQTSIYEELKELFNLQTLPYLIESFDNSHMMGQATVGAMIVWN 418 Query: 404 E--NGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFP 461 E N F K +R +NL D+ + M+ +L RR KN Sbjct: 419 ESLNTFDKKAFRHYNLESK-----DEYSQMKEMLIRRIESFEKN---------------- 457 Query: 462 SWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAK-----GPKRSAG--MEKFFVKK 514 PD+ I+DGG+ L A +++ + V + II+IAK R+ G + K Sbjct: 458 PAPDLWIIDGGETLLKLAFDIVQSVGV--NLDIIAIAKEKIDAKAHRAKGKAKDIIHYKT 515 Query: 515 GE----ALVLNMRDPILYFIQRLRDEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKR 569 + L D L F+QR RDEAHRFAIT H+K +R + L +I GIG + + Sbjct: 516 KNGEFKSFNLLTSDKRLQFVQRQRDEAHRFAITFHKKQKRAQDKQISLLQIKGIGEAKIK 575 Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 LL FG + I ++S + L ++ +++K A I ++F Sbjct: 576 KLLLYFGEFEKIKKASFDELKTV--LNEKDASTILDYF 611 >gi|157363428|ref|YP_001470195.1| excinuclease ABC subunit C [Thermotoga lettingae TMO] gi|229557870|sp|A8F4P7|UVRC_THELT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|157314032|gb|ABV33131.1| excinuclease ABC, C subunit [Thermotoga lettingae TMO] Length = 558 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 166/612 (27%), Positives = 288/612 (47%), Gaps = 65/612 (10%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN--HTHRITHMISQINNIR 59 ++ P PGVY +YVGKA L+ R+ SY + +N ++ +I ++++ + Sbjct: 6 KAKLAPLLPGVYIFYGKNKEYIYVGKAKRLRNRLLSYFNRSNGKYSKKIQAIVNEAEELD 65 Query: 60 FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG 119 + V E EALLLEAN+I KP++N++L+D + +PYI IT K PA+ R + G Sbjct: 66 YIVVSNEREALLLEANLIFNHKPKYNVMLKDAEFYPYIEIT-KELFPAVQIVR-IRSTGG 123 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 YFGP+ V V+ I+ LQ+ + R+C + + T+PC+ F + RC+ PCTG++ + Sbjct: 124 EYFGPYTDVKFVKDLIDCLQQVYQFRTCRRDMSKS-TKPCMEFYMHRCAAPCTGDLEPDS 182 Query: 180 YMEFVHEA-KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y+ + ++ L+G + I M + D+E+A +RD L ++ + Sbjct: 183 YINSSIQPLRRVLNGDISETLDLIEEKMKKHAKMMDFENAAKYRDLLVKFENVMQRQGVV 242 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--D 296 + +NL I + R + S ++ L F+ +Y Sbjct: 243 LEQ--------WRNLDVIGRFKNSYAVLRIRGGHVVGKLSYELDSTKLEDFIFHYYMVGK 294 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 PE ++L + + + K+ E+ L A + + Sbjct: 295 NELPEAVILERNINFDAEIYFGRPRD----------------KLEEELLHKARENAKNQA 338 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 T + +L K L P +IE +D SH+ G V +VV + KN+YR + Sbjct: 339 YTSGLRKDLLNKMVKVLNLNRYPMKIEGFDVSHLHGKLTVASVVVFFDGLPRKNEYRHYR 398 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + + DD ++ +++RR+S+ PD++ +DGG GQ+ Sbjct: 399 FNSDRI---DDFLTLKELVKRRYSK-------------------HELPDMIFVDGGTGQI 436 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 +A L ++ E ++ +AK + + L+L PIL + R+RDE Sbjct: 437 NAVVEALMEIGKECD--VVGLAKQNE-------IVCTRFGELILPFDSPILRTLVRIRDE 487 Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 AHRFA + HRK R+K+ S LDEI GIGP RK+ L+++FG+VK I ++ + +A + G Sbjct: 488 AHRFANSFHRKLRRKSALSSILDEIPGIGPKRKKKLIEAFGSVKNIRSATLQEIAEVLG- 546 Query: 596 SKKIACKIYNHF 607 S+K+A +I + Sbjct: 547 SRKLAAEILSRL 558 >gi|160903285|ref|YP_001568866.1| excinuclease ABC, C subunit [Petrotoga mobilis SJ95] gi|238687153|sp|A9BGW2|UVRC_PETMO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|160360929|gb|ABX32543.1| excinuclease ABC, C subunit [Petrotoga mobilis SJ95] Length = 574 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 166/607 (27%), Positives = 278/607 (45%), Gaps = 48/607 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH--THRITHMISQINNIRFTV 62 +P+ PGVY + G +Y+GKA NL+ R+ SY + N+ + M+ + N+ + + Sbjct: 9 NIPKKPGVYIFKNNKGDPIYIGKAKNLKNRVSSYFNKKNYIGNEKTYEMLEKATNLDYII 68 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T E +A +LEAN+I KP++NI+L+D + +PYIL+T + P + R +G ++ Sbjct: 69 TSNENQAFILEANLIYIHKPKYNIMLKDTRVYPYILVT-DEQFPKIKYIRTKKEEKGKFY 127 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP++ V V+ I LQ + +RSC D +++PC L+ + RC GPC ++ Y E Sbjct: 128 GPYSDVKFVKDVIEVLQSVYKIRSC-DRDLGRKSKPCFLYHLGRCYGPCYKDVDETVYQE 186 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242 V + KK LSG +K + + M ++YE A RD L L ++ Y Sbjct: 187 SVEKVKKVLSGDIEEVKNYLQKAMMDYAKIKNYEKAAQMRDTLFKLENLFEEVAVEYKNG 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 + + + G +F ++ E + + + K P + Sbjct: 247 KNLDIIMYEPPVYL-VLIVRKGYLISKLSFTMEGTLED-------FLYQYYIVRKNEPPS 298 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 ++ + + K + K G+ KI E A N ++ + Sbjct: 299 LISTL---YNEEISPEILDFLKEKGLKRIEKIGKSSKIYEMAYTNLQE----EIKRQKDL 351 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 LK + +L PK IE D SH+ G V +V K YRK+ L +D+ Sbjct: 352 SFALKQAKEILSLKKEPKIIEGIDISHLQGLYTVASLVRFENGKPKKEGYRKYRL--DDI 409 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 K DD +R V++RR+ + PD++ +DGGKGQ+++A Sbjct: 410 KAPDDFESIRTVIKRRYQK-------------------HELPDLLFIDGGKGQVNSAVEA 450 Query: 483 LKKLNVE-NRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 LK++ + ++ IAK +R F L L + P+L + +RDE HRFA Sbjct: 451 LKEIGYSLKDVDVVGIAKEDER-----IVFPGDIPDLHLPLDHPVLRLLIYVRDETHRFA 505 Query: 542 ITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 I +R R K + LD+I GIGP RK+ L++ FG ++ + +S E ++ + S+KIA Sbjct: 506 IGFNRSLRSKRFEKTKLDDIYGIGPKRKKELIKHFGGIQKLLEASIEEISKVVK-SEKIA 564 Query: 601 CKIYNHF 607 +I Sbjct: 565 KRIKESL 571 >gi|315636230|ref|ZP_07891484.1| excision endonuclease subunit UvrC [Arcobacter butzleri JV22] gi|315479591|gb|EFU70270.1| excision endonuclease subunit UvrC [Arcobacter butzleri JV22] Length = 616 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 188/638 (29%), Positives = 305/638 (47%), Gaps = 64/638 (10%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54 +Q+P GVYQ D G +LY+GKA L+ R+KSY ++ + RI MIS+ Sbjct: 6 KLQQLPNDAGVYQYFDKNGHLLYIGKAKVLRNRVKSYFKFTPKLQPADKLSPRIYKMISE 65 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114 + + + V E +AL+LE ++IK+LKP++NILLRDDK++PYI + P L R Sbjct: 66 VESCEWIVVPNEHDALILENSLIKQLKPKYNILLRDDKTYPYIFVDFDEDFPRLDITRRI 125 Query: 115 STIQG-SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 + YFGP++ ++S+ L V + CL QI++C PC Sbjct: 126 QKSKSIKYFGPYS--TGARDMLDSIYEIVPLVQKKSCV--KGKKACLFHQIQKCLAPCEN 181 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 +IS E+Y + V A +++ + + + M Q + +E A+ RDR+ + Q Sbjct: 182 KISKEEYAKIVENALEYIYNKTKLISK-LNEKMIQYSNDFRFEEAMTLRDRIKTIEKSQI 240 Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQI----- 285 + +D F++ N A I F G+ + FLK D+ + Sbjct: 241 KSGIDLATNEDIDIFAINTNNKKAVIVRMFLRDGKLTSSSHDFLKIDNFDEEFEFDYQEA 300 Query: 286 LSYFLRQFYTDKPC--PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQ 343 + +Y ++ P+ IL++ E E T+ LE ++ K+K+ PK+ +KR+I+ Sbjct: 301 YERAIINYYDNEIPLLPKEILIAHELEITNELEEFLHTRFNKKIKLINPKKDKKREIVNI 360 Query: 344 ALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVG 403 AL N ++ + I ++ + F L +P IE +DNSH+MG + VG M+V Sbjct: 361 ALNNCDE--LLRIENSKNQTSIYEELKELFNLQTLPYLIESFDNSHMMGQATVGAMIVWN 418 Query: 404 E--NGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFP 461 E N F K +R +NL D+ + M+ +L RR KN Sbjct: 419 ESLNTFDKKAFRHYNLESK-----DEYSQMKEMLIRRVESFEKN---------------- 457 Query: 462 SWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAK-----GPKRSAG--MEKFFVKK 514 PD+ I+DGG+ L A +++ + V + II+IAK R+ G + K Sbjct: 458 PAPDLWIIDGGETLLKLAFDIVQSVGV--NLDIIAIAKEKIDAKAHRAKGKAKDIIHYKT 515 Query: 515 GE----ALVLNMRDPILYFIQRLRDEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKR 569 + L D L F+QR RDEAHRFAIT H+K +R + L +I GIG + + Sbjct: 516 KNGEFKSFNLLTSDKRLQFVQRQRDEAHRFAITFHKKQKRAQDKQISLLQIKGIGEAKIK 575 Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 LL FG + I ++S + L ++ +++K A I ++F Sbjct: 576 KLLLYFGEFEKIRKASFDELKTV--LNEKDASTILDYF 611 >gi|88602450|ref|YP_502628.1| excinuclease ABC subunit C [Methanospirillum hungatei JF-1] gi|119367670|sp|Q2FPC6|UVRC_METHJ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|88187912|gb|ABD40909.1| Excinuclease ABC subunit C [Methanospirillum hungatei JF-1] Length = 520 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 167/558 (29%), Positives = 270/558 (48%), Gaps = 46/558 (8%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + +PE PG YQ D G +LYVGKA NL+KR+ SY + T RI ++S I +I Sbjct: 4 IDLTTIPEEPGCYQFKDETGTILYVGKAKNLKKRVSSYFQKKSITPRIDILVSLIRDIDV 63 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQG 119 VT +EVEAL+LE N+IK+ +P++NI L+D KS+ +I I++ P + RD + G Sbjct: 64 IVTSSEVEALILENNLIKKYQPKYNIDLKDAKSYAFIQISN-DPFPRIGIARDRTVKKTG 122 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 + +GPF S ++ + +++TF LR+C R CL + C+ PCTG+IS + Sbjct: 123 TLYGPFVSAAERDQILKFVKQTFHLRTCKKMT----KRACLRSHLGTCAAPCTGKISEPE 178 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI- 238 Y V A L G + +L + + M E+YE A++ RDR+AA+ ++ Sbjct: 179 YQYLVKSADYLLKGKSQDLIYDLRKEMETFAAAEEYEKALVIRDRIAAIENLSERQYVQR 238 Query: 239 --YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + + + + + G F + + F+ Q+Y+ Sbjct: 239 QKKSDEHIINYLVSGDTVYLILFHVERGSLTSKEEFVFPETEDFLD-----EFILQYYSS 293 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P ++L +E G V +T+PKQGEK+ +++ A N S Sbjct: 294 TKPPNELILPSLPGSG--MEEYLTHIRGSHVTLTIPKQGEKKHLLDLAYKNLEVSFF--- 348 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + +M L + + + P+ IE +D SH+ G V MV + K YR++ Sbjct: 349 ----TGKMRLAELGEALHMDTAPEVIECFDISHLRGTGTVASMVSFRDGKPDKRNYRRY- 403 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 N DD A M V++RR+S+L++ + PD++++DGG GQL Sbjct: 404 -KINSAGPSDDYAAMAEVVKRRYSRLLREK--------------SPMPDLIVVDGGPGQL 448 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 +A +L++L++ I IISIAK + E + + L + + P IQ +RDE Sbjct: 449 KSAHAILEELSL--PIPIISIAKREE-----EIYIPGRNTPLSIQKKSPASLLIQEIRDE 501 Query: 537 AHRFAITTHRKRRKKAAY 554 AHRFAIT +K R+K+ Sbjct: 502 AHRFAITYQKKLRQKSIK 519 >gi|237755865|ref|ZP_04584461.1| excinuclease ABC subunit C [Sulfurihydrogenibium yellowstonense SS-5] gi|237691976|gb|EEP60988.1| excinuclease ABC subunit C [Sulfurihydrogenibium yellowstonense SS-5] Length = 576 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 167/606 (27%), Positives = 279/606 (46%), Gaps = 46/606 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PE PGVY D + +Y+GKA N++ R+K++ + + + ++I + +T Sbjct: 14 KAPEEPGVYLFKDRKKQYVYIGKAVNIKNRLKNHFQQLKVDPKERKIFKESSSIEWIITK 73 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 ++ EA +LE +IK+ KP++N+ L+ S+P ++IT + P + R I+G YFGP Sbjct: 74 SDYEAFVLENELIKQYKPKYNVRLKSGSSYPMLVIT-DEEYPTVKISRKFGEIKGEYFGP 132 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F + + F LR+C R+ C + + CSGPC +IS ++Y E Sbjct: 133 FLPARTARAMKELIHKLFKLRTC--DPLPKRSLVCFDYHLGLCSGPCADKISMKEYKEDA 190 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI-YNRMD 243 AK FLSG N+ ++ +N T K +E A + RD++ A+ + I + Sbjct: 191 KVAKAFLSGNVKNVIYELYDKINDYTNKLMFEKAAVIRDQIKAIEMTIKKQEVIGVGVEE 250 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303 Y + A + G + E ++ + D P+ I Sbjct: 251 ADIFYFSSGRAYLIIVR---GNRIVGKDELKVQNEEFEEGNEIAIITDYYSKDTYIPKTI 307 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 + +++ E+ L+ K +V+I + I++ + I + Sbjct: 308 ITNKDLEDLENLKQWLLKAKNKEVEILTSLPEQVEGFIKRNIN-------------IENV 354 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 LK ++ +P R+E +D SH+ G VG VV K +YR+F + V Sbjct: 355 ENLKSEFERVFGFSLPNRVECFDISHLDGKFTVGSCVVWENGSMNKREYRRFRVKT--VN 412 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD A +R VL RRF + + + P++V++DGGKGQLS V Sbjct: 413 YIDDFASLREVLTRRFRRYKEMDNP---------------PELVLIDGGKGQLSQGLTVR 457 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 ++L +EN + + SIAK E + G+ + L +L F ++RDEAHRFAIT Sbjct: 458 QELGLEN-LRVFSIAKKD------EIIYTDDGKEVRLFENQELLKFFTKIRDEAHRFAIT 510 Query: 544 THRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 +RK R+K S LD I GIG RK +L +++ T+ I ++S E L + GI ++ K Sbjct: 511 YNRKLREKEGLKSVLDNIEGIGEKRKEILYRTYKTLDNILKASDEELKKL-GIPASVSQK 569 Query: 603 IYNHFH 608 I + Sbjct: 570 IKEYLK 575 >gi|320539477|ref|ZP_08039146.1| excinuclease UvrABC, endonuclease subunit [Serratia symbiotica str. Tucson] gi|320030602|gb|EFW12612.1| excinuclease UvrABC, endonuclease subunit [Serratia symbiotica str. Tucson] Length = 517 Score = 389 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 177/523 (33%), Positives = 274/523 (52%), Gaps = 30/523 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY+M D G V+YVGKA +L+KR+ SY + + ++ I I TVT Sbjct: 13 TLTSQPGVYRMYDATGTVIYVGKAKDLKKRLASYFRQQIASRKTETLVKNIAQIDITVTH 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLE N IK+ +PR+N+LLRDDKS+P I ++ P L HR + +G YFGP Sbjct: 73 TETEALLLEHNYIKQYQPRYNVLLRDDKSYPLIFLS-ADSHPRLAIHRGAKHAKGEYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEF 183 F + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y + Sbjct: 132 FPNSYAVRETLVLLQKLFPIRQCENSVYRNRSRPCLQYQISRCLGPCVAGLVSEEEYRQQ 191 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNR 241 V FLSG + + ++ M A+ + ++E A RD++ A+ + + Sbjct: 192 VDYVHLFLSGKDQQVLNQLIEQMENASKRLNFEEAARIRDQIQAVRSVTERQFVSGGSDD 251 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----K 297 +D + N +AC+ F G+ G+ ++F K + +++ F QFY + Sbjct: 252 LDVIGVAFNAGIACLHVLFIRQGKVLGSRSYFPKVPGGTEIGEVVQTFFGQFYLQGSQAR 311 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P ILL + LL S + G K++I +G++ + ++ A NA + KL+ Sbjct: 312 TLPSEILLDFNLLQKKLLAESLCELAGRKIQIQNKPRGDRARYLKLARTNAAIALASKLA 371 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + + L + K L R+E +D SH MG V VV NG ++++YR++N+ Sbjct: 372 QQSTFHQRLAELAKVLNL-CEINRMECFDISHTMGEQTVASCVVFDGNGPLRSEYRRYNI 430 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + DD A M VL+RR+ + + ++ PDV+ +DGGKGQL Sbjct: 431 --TGITPGDDYAAMAQVLKRRYGKALDEKK---------------IPDVIFIDGGKGQLG 473 Query: 478 AAQGVLKKLNV---ENRITIISIAKGPKRSAGMEK-FFVKKGE 516 A + LNV + + +I IAKG R AG+E FFV +GE Sbjct: 474 MAIEIFGSLNVSWDKKKPLLIGIAKGADRKAGLETLFFVPEGE 516 >gi|225848378|ref|YP_002728541.1| excinuclease ABC subunit C [Sulfurihydrogenibium azorense Az-Fu1] gi|225644068|gb|ACN99118.1| excinuclease ABC subunit C [Sulfurihydrogenibium azorense Az-Fu1] Length = 572 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 167/606 (27%), Positives = 284/606 (46%), Gaps = 46/606 (7%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 E P+ GVY + + +Y+GKA N++ R+K++ + + ++ + I + +T Sbjct: 11 ENAPQESGVYLFKNKKKQYIYIGKAVNIKNRLKNHYQQIKTDPKERKIFAESSQIEWIIT 70 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 ++ EA +LE +IK+ KP++N+ L+ S+P ++IT + P + R I+GSYFG Sbjct: 71 KSDYEAFVLENELIKQYKPKYNVRLKSGSSYPMVVIT-DEEYPTVKISRKYGEIKGSYFG 129 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PF + + + F LR+C R+ C + + CSGPC +IS + Y E Sbjct: 130 PFLPAKTARHMKDLIHKLFKLRTCDPMPIRNIV--CFDYHLGLCSGPCANKISKKDYNED 187 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD 243 AK FLSG ++ + +N+ T K +E A + RD++ A+ + + + + Sbjct: 188 AKIAKTFLSGNAKDVLYNLYDKINEYTQKLMFEKAAVIRDQIKAIETVIRKQEVLGIPIQ 247 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303 +++ + D E + L +Y + PE I Sbjct: 248 EADVFYFIDKRVFLIVVRGHTIIGKEELRISNQDFEEGSEVF---VLTSYYENNYIPEKI 304 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 +L+++ ++ L+ ++ G KV+I + + I++ + A Sbjct: 305 ILNKKVQDIDNLKQWLYQSKGKKVEIDFAILPQIKNFIDRNINIADL------------- 351 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 LK+ +K +P+RIE +D SH+ G VG VV + K +YR+F + V Sbjct: 352 ETLKEVFEKTFNFPLPRRIECFDISHLQGEFTVGSCVVWEDGYMNKKEYRRFKVKT--VD 409 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD A +R VL RRF + ++ E P ++++DGGKGQLS V Sbjct: 410 KVDDYASLREVLTRRFRKYLEMENP---------------PQLILIDGGKGQLSQGIEVR 454 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 +KL + I + SIAK E + G+ + L P+L +LRDEAHRFAI+ Sbjct: 455 EKLGL--NIKVFSIAKKE------EILYTDDGKEIKLFDSLPLLKLFTQLRDEAHRFAIS 506 Query: 544 THRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 +RK R+K S LD I GIG RK +L +++ T+ I ++ E L + GI +A K Sbjct: 507 YNRKLREKEGLKSILDNIEGIGEKRKEVLYRTYKTLDNILKAPDEELKKL-GIPTSVAQK 565 Query: 603 IYNHFH 608 I + + Sbjct: 566 IKEYLN 571 >gi|307353383|ref|YP_003894434.1| excinuclease ABC subunit C [Methanoplanus petrolearius DSM 11571] gi|307156616|gb|ADN35996.1| excinuclease ABC, C subunit [Methanoplanus petrolearius DSM 11571] Length = 516 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 173/553 (31%), Positives = 269/553 (48%), Gaps = 45/553 (8%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 M+++ +P+ PG Y D G +Y+GKA NL+KR+ SY + H + M+ + + Sbjct: 1 MNTDSLPDEPGCYIYRDSGGTPVYIGKAKNLKKRVSSYFTGS-HDPKTNAMLGVAEDFDY 59 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E EAL+LE N+IKR +P++NI LRD K++ YI IT K P + R G Sbjct: 60 IVTRSETEALILENNLIKRYQPKYNIDLRDSKNYAYIHITGG-KFPRIGIARR-KGDSGE 117 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGPF S + ++ +++ F LRSC + R R CL + + CS PC G+IS E Y Sbjct: 118 YFGPFVSAKERDYVLSVVRKIFRLRSCR----KLRKRACLRYHMGTCSAPCIGQISEEDY 173 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI-- 238 + V +A L G N + + M + ++E A++ RD++ A+ H+ Sbjct: 174 SDLVRKAVSVLKGNNSEIISSLKEEMAGLSAAREFEKAMVVRDQMTAVRHLSERQHIDQK 233 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 + + Y + F + G F+ E + + F+ Q+Y + Sbjct: 234 KDTDEDIINYTAREGIMYLMLFSVYKGTLGEKKEFVFDCDEGSFGE----FIIQYYAENE 289 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P ++L E + LE G KV++TVP++GEK+ +++ N + Sbjct: 290 PPRELILPEIPD--EALEEYLTSVKGMKVRVTVPQKGEKKALLDLVKKNIESLFFGGEAK 347 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 ++ K L P IE +D SH+ G + VG MV K YR+F + Sbjct: 348 -------VERLRKALHLTESPDVIECFDISHLSGTAMVGSMVQFRYGKPDKRNYRRFRIK 400 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD A + V+ RR+S+L+K E L PD++++DGGKGQLS+ Sbjct: 401 D--VEGIDDFAAIAEVVGRRYSRLVKEEAEL--------------PDLIVIDGGKGQLSS 444 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A L+KL+V+ I +IS+AK + E F L L D F+Q +RDEAH Sbjct: 445 ALAELEKLDVD--IPVISLAKREE-----EVFIPGLSAPLPLKKNDKASLFLQEIRDEAH 497 Query: 539 RFAITTHRKRRKK 551 RFAI+ +R R K Sbjct: 498 RFAISYNRLLRSK 510 >gi|154150636|ref|YP_001404254.1| excinuclease ABC subunit C [Candidatus Methanoregula boonei 6A8] gi|153999188|gb|ABS55611.1| excinuclease ABC, C subunit [Methanoregula boonei 6A8] Length = 517 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 172/554 (31%), Positives = 279/554 (50%), Gaps = 45/554 (8%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + +PE PG Y D GR++YVGKA NL+KR+ SY +H + +++ I ++ F Sbjct: 2 IDTAGLPENPGCYLYSDADGRIIYVGKAKNLKKRVSSYFTKKDHDPKTRSLVAHIASVDF 61 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT TE EA LLE +IK+ +P++NI L+D K + +I +T + + P L R ++ + Sbjct: 62 VVTGTETEAFLLENTLIKKHQPKYNIDLKDAKRYAWIELT-REEFPRLVIARRATDDG-T 119 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 +FGPF S ++ + ++ F LR+C + RPCL ++ CS PCTG++S +Y Sbjct: 120 FFGPFVSAAERDRVLAVAKKVFHLRTCK----KLPKRPCLRRHMQSCSAPCTGKVSPAEY 175 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E V +A L G + L +++ M + +E+YE A++ R+ + A+ H+ + Sbjct: 176 DENVKKAALLLKGKSTELLDELRHEMAERASREEYERALVLRNEINAIGHLADRQHVERR 235 Query: 241 R---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 R D + A + G F + + IL FL Q+Y+D+ Sbjct: 236 REYDQDVIAYQVTDGKAYLTVFNVERGTLANKEEFTFEAGED-----ILEEFLVQYYSDR 290 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P ++L E + L ++ G +V+I VP++GEKR++++ A N + + Sbjct: 291 EPPNELILGHETDP--ALAGFLSEKKGRQVEIVVPQRGEKRQLLDLARKNLEIAFFRDTL 348 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + LPH P IE +D SH+ G + VG MV + K+ YR+F + Sbjct: 349 KSA-------ELGAALGLPHPPAVIECFDISHLSGTAMVGSMVQFRDGRPDKSGYRRFKI 401 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 V+ DD A + V++RR+++LI +PD+VI+DGGKGQLS Sbjct: 402 KT--VEGIDDFASIAEVVKRRYTRLIDEH--------------APFPDLVIIDGGKGQLS 445 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 AAQ L L + +I+IAK + E + L L+ + L ++ +RDEA Sbjct: 446 AAQESLAALGASAQ-PVIAIAKREE-----EIYTPHNALPLRLDKKSIALRYVHEIRDEA 499 Query: 538 HRFAITTHRKRRKK 551 HRFAIT +R RKK Sbjct: 500 HRFAITYNRLLRKK 513 >gi|320538515|ref|ZP_08038376.1| excinuclease ABC subunit C [Treponema phagedenis F0421] gi|320144622|gb|EFW36377.1| excinuclease ABC subunit C [Treponema phagedenis F0421] Length = 659 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 176/667 (26%), Positives = 289/667 (43%), Gaps = 89/667 (13%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + P+ GVY D G ++YVGKA +L+ R+ SY S + ++S+ + + T Sbjct: 19 KAPKSSGVYLWADAGGVIIYVGKAKSLKNRLSSYFTSK-KDIKTRILVSRAAGLEYIQTK 77 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 E EALLLE +IK+ KPR+NI L+D K++P + +T+ + P LY+ R+ YFGP Sbjct: 78 NEYEALLLENTLIKKHKPRYNINLKDGKTYPVLKLTN-EQFPRLYRTRNIHNDGAQYFGP 136 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F +V AV++ ++ ++R + LR C + R +PCL + I RC PC G S E+Y + V Sbjct: 137 FPNVAAVDQFLDLVKRNYKLRQCK--TLKKRAQPCLYYHIGRCDAPCCGLGSREEYHKEV 194 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNR 241 E L G +K+ M +A ++++E A RD + A+ I+ N D Sbjct: 195 EEIALLLDGDADTAVKKLTEKMKEAAAQKEFERAARIRDGIQAVYAIRGQNIVEDMDPEG 254 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D + + G+ G + ++ + +ILS FL +YT Sbjct: 255 RDYIAWASEAAMVTFAVLRMRGGRLVGRDLYRTQSLKDEE--EILSEFLIAYYTKAELIP 312 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPK---------------------------- 333 + L E F +++ + KIT+ Sbjct: 313 PHIFVPSESGHELAEKWFKEEFNVETKITMIPLEKSEEKSFEESSRAAAIPEPKEKSFLS 372 Query: 334 -------------------QGEKRKIIEQALINAHRSHTQKLSTE-ISHQMILKDFTKKF 373 G + L + + L++ Sbjct: 373 VSLANTCANSEVAEPENMYAGNSFGLPNSVLAHHRAALAMAKFNAGEDAARRLREAGDYP 432 Query: 374 ALP---------HIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424 AL +IP RIE +D +H+ G V ++ + K YR F L D Sbjct: 433 ALEELQKILSLPNIPHRIEGFDIAHLYGKYTVASLISFKDGNPDKKNYRIFRLKNTDGV- 491 Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484 DD MR + RR+++LI + +L PD++++DGG GQ++AA+G+L Sbjct: 492 IDDFESMREAVARRYTRLINEKADL--------------PDLILIDGGIGQVNAAKGILD 537 Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544 L E I I+ +A+ + E F + +VL R L +QR+RDE HRFA T Sbjct: 538 AL--EADIPIVGLAEKDE-----ELFLPHTSKPIVLPKRSVALRMLQRVRDETHRFATTR 590 Query: 545 HRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 +R R K + + IG R +LL+ FG+++ + ++S ET+A+ IS + A ++ Sbjct: 591 NRHLRSKEELKLRFENLPHIGKKRAAMLLKQFGSIEAVGKNSAETIAAAAKISLQQASEV 650 Query: 604 YNHFHKN 610 K Sbjct: 651 LEKITKE 657 >gi|303248016|ref|ZP_07334282.1| excinuclease ABC, C subunit [Desulfovibrio fructosovorans JJ] gi|302490573|gb|EFL50478.1| excinuclease ABC, C subunit [Desulfovibrio fructosovorans JJ] Length = 609 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 164/624 (26%), Positives = 250/624 (40%), Gaps = 51/624 (8%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTCTEVEALLLE 73 M G++LYVGKA NL+ R+ SY H+ + ++++I + +T +E EALLLE Sbjct: 1 MKGGKGKILYVGKAKNLRARLSSYFRGEAGHSVKTAALVARIAAVEVLLTASEKEALLLE 60 Query: 74 ANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEK 133 +++IK+ +PR+N++L+DDK++ + + P L R S +YFGPF S A Sbjct: 61 SSLIKKHRPRYNVVLKDDKNYILFKLDKRSPYPRLAFTRRVSRDGAAYFGPFTSAAAART 120 Query: 134 TINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSG 193 T L R F LR C D +R RPCL I +C PC + E YM VH + FL+G Sbjct: 121 TWKELGRVFALRKCGDKTLNNRIRPCLYHFIGQCLAPCVKAVDPETYMALVHRVEAFLTG 180 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR---MDCFSLYHN 250 + + + + + M QA+ + D+E A RD L A+ ++ R MD Sbjct: 181 RSAEVLKSVQKEMEQASERLDFEEAARLRDLLFAMRRTVEGQATVLTRLVDMDVADFTVT 240 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAE 310 + + F G+ TFF L QFY + ++ + Sbjct: 241 DHGVGLCVLFVRQGRLLDRKTFFFPGIEAGEAVGAAGSALVQFYRPESFIPARVVVPPSL 300 Query: 311 ETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFT 370 T G+ + E + + L + Sbjct: 301 APQTAVGFVADGEPEAADATGEASGDGAALAEILAE-RRGGPVRLGPPRGREERKLLELA 359 Query: 371 KKFALPHIP-----------------------KRIEIYDNSHIMGCSAVGCMVVVGENGF 407 A RIE D SH+ G MVV Sbjct: 360 GANARRAAEEAVKAAERDVLPSLAGSFGLAALNRIEAVDVSHLGGKGVRVGMVVFEAGAP 419 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 K+ YR + + + D A+ +R S P WPD++ Sbjct: 420 KKSDYRAYAFPELEGTSDDYLALASFAAKR-------------------AASGPPWPDLL 460 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR---SAGMEKFFVKKGEALVLNMRD 524 ++DGGKGQL A L + + SIAKG R G + + L L Sbjct: 461 LVDGGKGQLEAVGRALTEAGAGGAFALASIAKGDTRSQNEMGDVIYVPGRKNPLALRPGS 520 Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583 P L F+QR+RD H F+I R+ R K S + ++ G+GP R L ++FG+V + Sbjct: 521 PELLFLQRVRDTVHDFSIGRQRRARTKTGLQSAVLDLPGVGPKTARKLWEAFGSVAAMKA 580 Query: 584 SSPETLASIEGISKKIACKIYNHF 607 +SP LA G+ K A K+ + Sbjct: 581 ASPADLALKAGLGPKQAAKLADSL 604 >gi|268679231|ref|YP_003303662.1| excinuclease ABC, C subunit [Sulfurospirillum deleyianum DSM 6946] gi|268617262|gb|ACZ11627.1| excinuclease ABC, C subunit [Sulfurospirillum deleyianum DSM 6946] Length = 599 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 198/626 (31%), Positives = 301/626 (48%), Gaps = 49/626 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54 + P+ G+YQ + +G +LYVGKA NL R+KSY S + RIT MI + Sbjct: 5 KIKNAPKSAGIYQYFNASGALLYVGKAKNLHNRVKSYFRFSEQLSASPTLSARITKMIHE 64 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114 + N+ + V +E +AL+LE ++IK+LKP++NILLRDDK++PYI I P R Sbjct: 65 VENVEYIVVQSEHDALILENSLIKQLKPKYNILLRDDKTYPYIAINLADPFPRFEITRKI 124 Query: 115 STIQG-SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 + + YFGP + + + + +L F L + CL +QI RC PC Sbjct: 125 TNDKNMKYFGPLS--GSAKALLEALYLAFPLVQKKG--CLKEKKACLFYQIGRCLAPCEA 180 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 +I + Y + V +A + LS L + M +A+LK ++E A RD + ++ + Sbjct: 181 KIETASYAKIVQQALESLS-EQKKLLHLLHVKMEEASLKLNFEEAAKLRDLMRSIKESLH 239 Query: 234 HNDSIYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290 + D F++ + A I F G+ T FL ++ L Sbjct: 240 VTHVELSTLENYDVFAIEIVEKTAVIMRLFIRAGKIVSTSHSFLHHVHGFDKEELYQRAL 299 Query: 291 RQFYT--DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA 348 +FY + +IL++E EE L + +++ K+ I+ P++GEKR +I A NA Sbjct: 300 FEFYQPMHQTFAHHILVAESFEEADALAVFLSEKFNQKITISTPQKGEKRHLISLAKENA 359 Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 H Q ++ + H I + F L +PKRIEI+DNSH+ G S VG MVV E F+ Sbjct: 360 HLLLLQHITKQ--HTSITEQLHALFDLTALPKRIEIFDNSHLGGTSPVGAMVVWDEG-FL 416 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 K YR + + +D+ A MR +LERR + K S PD+ + Sbjct: 417 KASYRHY-----LLHHKDEYAQMREMLERRIADFKKE----------------SPPDLWL 455 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNMRD 524 LDGGK A G+LK+ + + I+ AK + K AL L D Sbjct: 456 LDGGKTLRQLALGLLKEARISLDVLAIAKEKIDAKAHRAKGSAHDLVYGKSSALKLAPAD 515 Query: 525 PILYFIQRLRDEAHRFAITTH-RKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583 L F+Q+LRDEAHRFAI+ H +K+R K L I G+G + L+ FGT + I Sbjct: 516 KRLQFLQKLRDEAHRFAISFHQKKKRSKDLSMELLSIEGMGQATLKKLVSYFGTFEAIYA 575 Query: 584 SSPETLASIEGISKKIACKIYNHFHK 609 ++ E L I KK+ K++ +K Sbjct: 576 ATQEELE--VTIGKKMGEKLFQSLNK 599 >gi|170288481|ref|YP_001738719.1| excinuclease ABC, C subunit [Thermotoga sp. RQ2] gi|229557873|sp|B1L9N8|UVRC_THESQ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|170175984|gb|ACB09036.1| excinuclease ABC, C subunit [Thermotoga sp. RQ2] Length = 557 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 159/601 (26%), Positives = 280/601 (46%), Gaps = 58/601 (9%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 E PGVY + G +Y+GKA L R++SY+ N T ++ ++ + + + V E Sbjct: 14 EEPGVYIFKNK-GVPIYIGKAKRLSSRLRSYL--NPQTEKVFRIVEEADELETIVVMNER 70 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 EA +LEAN+IK+ +P++N+ L+D +PYI I+D IP + + +YFGP+ S Sbjct: 71 EAFILEANLIKKYRPKYNVRLKDTNFYPYIRISDDE-IPYVEIVKRKLRDG-TYFGPYTS 128 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 V V + LQ+ R+C S + RPC L+ + RC GPC G + E + E + + Sbjct: 129 VQFVRNLLEILQKIMGFRTCK-SDLKRIKRPCFLYHLGRCIGPCIG--NIESHEEAIRKL 185 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSL 247 ++FLSG + + + M + D+E+A +RD L LS++ ++ + Sbjct: 186 REFLSGNMEEVFDYLKEKMETHSKMLDFENAAKYRDLLLNLSNVLESQGVVFEENINCDV 245 Query: 248 YHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSE 307 + + G G +F ++ S + R P+ ++L Sbjct: 246 LVHAHDL-FVVLRVRNGYLVGKISFEMEGGSVEDFIREYYISGRG-----DIPKTLILES 299 Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367 + +E Y + E L A ++ +L + L+ Sbjct: 300 DLDEMD-----------YSSLGFEYVGPPRSTTEEDLLEKAKKNLENELKMRGLRKEALE 348 Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427 + K + P RIE D SH+ G V +VV + K+ YR++ + + DD Sbjct: 349 ELMKLLNMKDFPYRIEGIDISHLQGKYTVASLVVFEDGFPKKSDYRRYKIEQDH---PDD 405 Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487 +R V++RR+S+ P+++ +DGG GQ++AA LK++ Sbjct: 406 YESIRTVVKRRYSK-------------------HPLPNLLFVDGGIGQVNAAIEALKEIG 446 Query: 488 VENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRK 547 + ++ +AK + V + + L P+L + ++RDE HRFA++ HRK Sbjct: 447 KDC--PVVGLAKKEET-------VVFENREIHLPHDHPVLRLLVQIRDETHRFAVSYHRK 497 Query: 548 RRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 RR+K + S LD + GIGP+RK+ L++ FG+++ I +S E +A + G S +IA ++ + Sbjct: 498 RREKESLRSVLDNVPGIGPIRKKKLIEHFGSLENIRSASLEEIARVIG-STEIARRVLDI 556 Query: 607 F 607 Sbjct: 557 L 557 >gi|257458985|ref|ZP_05624104.1| excinuclease ABC, C subunit [Campylobacter gracilis RM3268] gi|257443370|gb|EEV18494.1| excinuclease ABC, C subunit [Campylobacter gracilis RM3268] Length = 600 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 179/625 (28%), Positives = 282/625 (45%), Gaps = 52/625 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54 + +P PGVYQ D AG++LYVGKA L+ R+KSY S + RI MIS+ Sbjct: 5 EIKSLPAAPGVYQYFDAAGKLLYVGKAKILKNRVKSYFSFTPALAPSPRLSARIAKMISE 64 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114 ++ + VT +E +AL+LE + IK+LKP++NILLRDDK++PYI + P R Sbjct: 65 AAHLEYIVTPSESDALILENSFIKQLKPKYNILLRDDKTYPYIYVNLDDDFPRFEITRKI 124 Query: 115 STIQG-SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 + YFGP+ ++ + +L F L + V + CL QI RC+ PC Sbjct: 125 VKGKNIRYFGPYFHG--AKEILQTLYMQFPLVQKKNCV--KGKKACLFHQIGRCAAPCED 180 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 +IS + Y V A L + + + M + E++E A RD++ L + Sbjct: 181 KISKQDYARIVQSALAALKNPQKMVPQ-LQDRMARLAQSENFEEAAQIRDKIEILKQMNV 239 Query: 234 HNDSIYNRMDC---FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTD---SESTNAQILS 287 + ++D F++ L C G+ + + + ++ Sbjct: 240 KVEVDLAKLDDFEVFAIAARDGLVCAVHFSIREGKISASSSHIINCKAPSADDIANAYKQ 299 Query: 288 YFLRQFYTDKPC-PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 L F P I + +E +++ L+ K++ KI PK GEKRKI E A Sbjct: 300 MILSAFPAAAPVACAKIYVYDEFDDSDLVCEILSKRHERAFKIYAPKIGEKRKICEIAYQ 359 Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 N + + L + L++ F L ++P IE++DNSH+ G +AVG M+ + Sbjct: 360 NCEINIKKHL--KTHDYAFLQELKDYFNLTNLPVNIEVFDNSHMFGAAAVGAMISFQDGE 417 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 F K YR + + +D MR L S+ +K +E + PD+ Sbjct: 418 FNKQNYRH-----KHLSSNNDYDQMREYLT---SRALKFDE-------------LAAPDL 456 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNM 522 ++DGG L+ A+ ++ + I IS AK + + K L Sbjct: 457 WLIDGGTALLNLAEEIICSVGANVDIIAISKEKIDAKAHRAKGAAKDKICTKSGIFSLPT 516 Query: 523 RDPILYFIQRLRDEAHRFAITTHRK-RRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580 D L F QRLRDEAHRFAI+ H+K +RK S L + G+ + LL +G + Sbjct: 517 DDKKLQFFQRLRDEAHRFAISFHQKSKRKLDLQSSKLLSL-GVSKGSLKKLLDFYGDFES 575 Query: 581 ISRSSPETLASIEGISKKIACKIYN 605 I +S + + S+ I + A KI N Sbjct: 576 IYTASFDEIRSLTNI--QTAEKILN 598 >gi|291288234|ref|YP_003505050.1| excinuclease ABC, C subunit [Denitrovibrio acetiphilus DSM 12809] gi|290885394|gb|ADD69094.1| excinuclease ABC, C subunit [Denitrovibrio acetiphilus DSM 12809] Length = 599 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 185/615 (30%), Positives = 287/615 (46%), Gaps = 42/615 (6%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFT 61 +++PE PG+Y L G +LYVGKA NL+ R+ SY + R M+ +IRF Sbjct: 6 LKEIPENPGIYLYLGKNGEILYVGKAKNLRNRVSSYFVDFESKPIRTRKMLQSARDIRFV 65 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT +E EALLLE N+IK KPR+N+ L+D KS+P+ILIT + P L R+S Y Sbjct: 66 VTTSEAEALLLENNVIKTEKPRYNVRLKDSKSYPFILIT-EEDYPKLRITRESGKKG-EY 123 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPF V ++ ++ L + F LRSC DS FR + CL FQI++C GPC IS +Y Sbjct: 124 FGPFVDVGSLRSIVDELLKVFPLRSCGDSKFRE-GKLCLKFQIRKCLGPCENMISKNRYN 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---- 237 + V + ++F G +K + + M + + ++E A I RDRL LS + Sbjct: 183 QLVEQIREFFRGNVDTVKSHMEQEMMRLSDDMNFEEAAIMRDRLRGLSRLFTKQTVVMPD 242 Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 + +D F + +N++ I F G+ G+ T L+ + + ++ F+ Q Y+ Sbjct: 243 DTSSIDVFVPHSFENVSGITAMFIRGGRLIGSRTEILE--DDENPSGVIESFVLQMYSVL 300 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 ++ E++ L+ + K K++ K+ AL N L+ Sbjct: 301 RNYPQMVYIAGLEDSGSLQEALEKLADKKLRFRKRGYAAVEKL---ALDNGRVQTQLYLN 357 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + I + K + RIE D SH+ G VG +V + F K QYRK+ + Sbjct: 358 KLSKRKDITEKLKKIIGAESVS-RIECVDISHLGGSGTVGVSIVAVDGEFSKAQYRKYRI 416 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + DD + + R+F + + E D+ I+DGG GQL+ Sbjct: 417 RTAE---NDDFISIYELFSRKFENIQEGSE--------------PPADLYIVDGGIGQLN 459 Query: 478 AAQGVLKKLNVENRITIISIAKG-------PKRSAGMEKFF-VKKGEALVLNMRDPILYF 529 +A + ISI+KG K+ +E + L L DP+L F Sbjct: 460 SAMRAASEKGYTANF--ISISKGRSIKFMKDKQEQSIESVHIPGRKNPLNLKKNDPLLLF 517 Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 IQ++RDE+HRFAI RK K SPL + G+G R +L+ F + + + Sbjct: 518 IQKVRDESHRFAIDYSRKLALKNFKKSPLLMLEGVGEKTVRKVLEVFPDIYERKDLTAKD 577 Query: 589 LASIEGISKKIACKI 603 ++ I +K A I Sbjct: 578 ISEYCSIPEKTAAVI 592 >gi|124485758|ref|YP_001030374.1| excinuclease ABC subunit C [Methanocorpusculum labreanum Z] gi|124363299|gb|ABN07107.1| Excinuclease ABC subunit C [Methanocorpusculum labreanum Z] Length = 520 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 160/552 (28%), Positives = 267/552 (48%), Gaps = 44/552 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PG Y + G ++YVGKA +L+KR+ SY +H + +++ I ++ + +T Sbjct: 8 DIPHSPGCYLYKNSEGTIIYVGKAKDLRKRVSSYFQKKDHDPKTQKLVAAIRSVEYIITA 67 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 T+ EA LLE +IK P++NI L+D KS+ YI +T K P + R+ + G +FGP Sbjct: 68 TDEEAYLLENTLIKHHLPKYNIDLKDAKSYAYIELT-KEPYPRITIARN-TRGNGQFFGP 125 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S + ++ +++TF LRSC + + RPCL + I C+GPC +S ++Y + Sbjct: 126 FVSAKERDYVLSVVKKTFRLRSCKNMP---KNRPCLRYHIGNCTGPCGAHVSVDEYAKQC 182 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNR 241 A + L G + K+ M + + ++E+A++ RD + A+ ++ + + Sbjct: 183 SYAAEVLKGSTKEITAKLEEEMAEYSKDMEFEAALLCRDMITAVENLSSRQYVARKTDHD 242 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D + + + G G + ++++ + R + + P P+ Sbjct: 243 EDVIAYRVVDGTVYLMVFHVYKGTLGGRD----EFIFDASDGFFEEFVARYYTDENPAPK 298 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 I++ EE + L G+ VKITVPKQG K+K++E A N H Sbjct: 299 EIIVEEELD--EALAAYLGTLAGHVVKITVPKQGAKKKLLELAGKNIETVHFGDEIK--- 353 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 + + L P IE +D SH+ G V MV K YR+F + Sbjct: 354 ----VMELQAALHLKTPPNVIECFDISHLSGTDTVASMVQFRAGRPDKRNYRRFKIKT-- 407 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 V DD A M V+ RR+S+LI+ E+ L PD++++DGGKGQLS+A+ Sbjct: 408 VDGIDDFASMAEVVHRRYSRLIEEEKPL--------------PDLIVIDGGKGQLSSAKR 453 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 ++ +L+ + I +IS+AK + E F L + ++Q +RDEAHRFA Sbjct: 454 IIDELDAD--IPLISLAKAEE-----EVFVSGVPFPLPFGKKTKANMYLQEIRDEAHRFA 506 Query: 542 ITTHRKRRKKAA 553 +T +R RKK Sbjct: 507 VTYNRLLRKKRL 518 >gi|289450502|ref|YP_003475302.1| excinuclease ABC subunit C [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185049|gb|ADC91474.1| excinuclease ABC, C subunit [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 650 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 180/668 (26%), Positives = 297/668 (44%), Gaps = 90/668 (13%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFT 61 + +PECPGVY M D G+++Y+GKA NL++R++SY +N T ++ MIS I + F Sbjct: 8 LDLVPECPGVYLMKDATGQIIYIGKAINLRRRLRSYFGANPQGTLKVLTMISHIRDFDFI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS---STIQ 118 + E+EALLLE+N+IK+ +P +N+LL+D+ +PY+ I+ + P +YK Sbjct: 68 ICANELEALLLESNLIKKYQPFYNVLLKDNHDYPYLCISWQEPYPRIYKAYRIGNDIKRG 127 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEIS 176 Y+GP+ + D ++ F L++C + R + RPCL + IKRC GPC G +S Sbjct: 128 AKYYGPYLNGDLNRALA-AIHALFPLKTCNRTFPRDIGKERPCLNYHIKRCIGPCLGSVS 186 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + +Y V + +L G L +I ++M +A D+E A + RDRL+ L + Sbjct: 187 ATQYRAVVRQVADYLEGKYPKLLAEIEKSMKEAADNLDFERAAVLRDRLSGLKALIARAQ 246 Query: 237 ----SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILS----- 287 S MD ++ CIQ FG+ GT TFFL+ + Sbjct: 247 RVTVSGQKSMDVYATAREGGEICIQKLQVRFGKITGTGTFFLQDPQPVGMGEDRGQTLLF 306 Query: 288 YFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQY-----GYKVKITVPKQGEKRKIIE 342 F+ Q Y + +++ +E FK++ G ++++ +PK+G K ++ + Sbjct: 307 DFILQDYLNNTGETEMIVLPPYINVDSVEWDNFKRWLFSAAGREIQLCLPKKGHKYELWQ 366 Query: 343 QALINAHRSHTQKLSTEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGC 398 A + A + + E + + + L KRIE YD S+ V Sbjct: 367 MAEMTAEKVINHHAAVENKRKIQTETAWQYLAELCGLKGQLKRIEAYDVSNNGSQDIVCA 426 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEY 458 M V K YR FNL + DD A M L RR + Sbjct: 427 MTVFENGLANKKAYRDFNL--SYQTEIDDYAAMAETLRRRIKHF-------------DDS 471 Query: 459 SFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEAL 518 +F + P ++++DGG G + QGVL + V+++I + + K + + +G+ L Sbjct: 472 NFGAEPQLILVDGGLGHVHTVQGVLAE--VKSKIKVAGMVKDDRHRTRG--LVLPEGQVL 527 Query: 519 VLNMR----------------DPI---------LYFIQRLRDEAH-----------RFAI 542 L L + ++DE H R Sbjct: 528 ELAKSVKTTHAGVLPSVSGDYHEADKEYRQAVLLKLLTEIQDETHRRAIRANRNRSR--- 584 Query: 543 TTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 R+ R K L+ + GIGP R+ LLL FG++K I+ + L + G+ +A K Sbjct: 585 --DRQLRYK-----LEAVPGIGPKRRALLLDKFGSLKDIAAAPVSELVAKTGLPTDVAHK 637 Query: 603 IYNHFHKN 610 I+ FH++ Sbjct: 638 IFAFFHQD 645 >gi|167471073|ref|ZP_02335777.1| UvrABC system, C protein [Yersinia pestis FV-1] Length = 519 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 178/528 (33%), Positives = 280/528 (53%), Gaps = 30/528 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D AG V+YVGKA +L+KR+ SY + + ++ I I TV Sbjct: 11 LKTVTSQPGVYRMYDTAGTVIYVGKAKDLKKRLTSYFRAQVANRKTETLVKNIAQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPLIFLSADE-HPRLAVHRGAKHEKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RCSGPC +S E+Y Sbjct: 130 GPFPNSYAVRETLALLQKLFPVRQCENSVYRNRSRPCLQYQIGRCSGPCVEGLVSEEEYQ 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 V + FLSG + + ++ M +A+ + +E A RD++ A+ + + Sbjct: 190 RQVDYVRLFLSGKDQQVLTQLITRMEEASQQLHFEDAARIRDQIQAVRRVTEQQFVSGDS 249 Query: 242 M--DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295 D + + LAC+ F G+ G+ ++F K + + ++++ F+ QFY Sbjct: 250 EDLDVIGVAFDAGLACVHVLFIRLGKVLGSRSYFPKVPAGTELSEVVQTFVGQFYLQGSQ 309 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL E LL S + G K++I +G++ + ++ A NA + + Sbjct: 310 GRTLPGEILLDFTLTEKDLLASSLSELAGRKIQIQSRPRGDRARYLKLARTNASTALITR 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + +K+ K L R+E +D SH MG V VV NG V+++YR++ Sbjct: 370 LSQQSTIHQRMKELAKVLKLD-EINRMECFDISHTMGEQTVASCVVFDANGPVRSEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + + DD A M VL+RR+ + + +++ PDV+ DGGKGQ Sbjct: 429 NI--SGITPGDDYAAMAQVLKRRYGKALDDQK---------------IPDVIFSDGGKGQ 471 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALV 519 LS A V LNV + + ++ +AKG R G+E F+ +GE + Sbjct: 472 LSQAFDVFASLNVPWDQQKPLLVGVAKGSDRGTGLETLFLASEGEGIP 519 >gi|219852419|ref|YP_002466851.1| excinuclease ABC subunit C [Methanosphaerula palustris E1-9c] gi|219546678|gb|ACL17128.1| excinuclease ABC, C subunit [Methanosphaerula palustris E1-9c] Length = 521 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 161/554 (29%), Positives = 266/554 (48%), Gaps = 46/554 (8%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + +P PG Y D+ G V+YVGKA NL++R+ SY ++ + ++S I +I+F Sbjct: 7 VDLNTLPTAPGCYLYHDVDGTVIYVGKAKNLKRRVSSYFQRHDLDPKTEALVSHIASIQF 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT EVEALLLE N+IKR P++NI L+D K++ YI + + P RD G+ Sbjct: 67 IVTNNEVEALLLENNLIKRHWPKYNISLKDSKTYAYI-LRTDEEFPRFVVARD-RDQPGT 124 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGPF S + + +L+ F +RSC R + R CL + ++ C GPC G IS E+Y Sbjct: 125 YFGPFTSGLERDYLLRALKHAFLIRSCR----RLQKRACLRYHMQSCLGPCVGAISREEY 180 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI-- 238 + V A+ LSG +L + M + E++E A++ RD++ A+ +Q H Sbjct: 181 AKQVCRAEAVLSGKGDDLIAALKEEMAARSEAEEFEQALVIRDQIQAIERLQEHQRVQRQ 240 Query: 239 -YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D + + + G + + ++ +Y D Sbjct: 241 KNYDEDVINYLVVDGTVYLALFNIYRGTLGQKEEYVFPFHQGFLDEFLVQ-----YYADH 295 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P P+ +L+ E + + + + G KV +TVP++G+++ +++ N Sbjct: 296 PVPKEVLVPHEVDGS--IAEFLGEMKGQKVGVTVPQRGDRKNLLDLVKTNIETQFFGDRI 353 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 +++ K LP P IE +D SH+ G + VG MV + + YRKF + Sbjct: 354 K-------VEELKKALHLPTSPGVIECFDISHLSGTAMVGVMVQFRDGRPDRKNYRKFRI 406 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 V+ DD + V+ RR+S+L + ++ PD++++DGGKGQL Sbjct: 407 RT--VEGIDDFRAIAEVVRRRYSRLQREQK--------------RMPDLIVVDGGKGQLH 450 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 AA L L + ++ +I++AK + E F + L+ R F+Q++RDE Sbjct: 451 AAADELASLGL--KVPLIALAKREE-----EVFMPGLSLPMPLDRRSKASLFLQQIRDET 503 Query: 538 HRFAITTHRKRRKK 551 HR AIT +R R+K Sbjct: 504 HRSAITYNRTLRRK 517 >gi|34557927|ref|NP_907742.1| excinuclease ABC subunit C [Wolinella succinogenes DSM 1740] gi|81653452|sp|Q7M8K0|UVRC_WOLSU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|34483645|emb|CAE10642.1| EXCINUCLEASE ABC SUBUNIT C [Wolinella succinogenes] Length = 602 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 182/624 (29%), Positives = 281/624 (45%), Gaps = 53/624 (8%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQI 55 + +P+ GVY D ++LYVGKA +L+KR+KSY S + RI MIS+ Sbjct: 10 LQNLPDQSGVYHYFDSRSKLLYVGKAKSLKKRVKSYFQFTPTLAPSPKLSPRIHKMISEA 69 Query: 56 NNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS- 114 IR+ V E +AL+LE ++IK+LKP++NILLRDDK++PYI + P L R Sbjct: 70 AFIRYIVVENEHDALILENSLIKQLKPKYNILLRDDKTYPYIYFDENESFPRLEITRKIL 129 Query: 115 STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE 174 YFGP+ + L + CL +QI RC PC + Sbjct: 130 PHKGVRYFGPYTTG----ARELLESLYELLPLVQKKGCLKAQKACLFYQIHRCLAPCESK 185 Query: 175 ISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234 IS E+Y E EA L + + + M + +E A RDR+ + I+ Sbjct: 186 ISKERYGEIFKEALGLLQNHSKLISR-LKERMEKLAENLRFEEAGELRDRIEKIKRIEAF 244 Query: 235 NDS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLR 291 + +D ++ + + + F G+ + + LK + + Sbjct: 245 SGIDLARLEDLDILAIATSGKHSMLTRLFMREGKVVSSTSTPLKAQEGLDEEEAYRRAIL 304 Query: 292 QFYTDKP--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH 349 +Y P+ ILL E E LE +G K+ + PKQG K+ +I+ AL NA Sbjct: 305 HYYDSFMPLPPKQILLPLELESKRELEAHLEGLFGRKIPLHHPKQGSKKALIDLALKNAE 364 Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 +L E +L+ + L +P+RIE +D SH+ G + VG MVV E + Sbjct: 365 E--LLRLEGEKEEIPLLESLQELLGLESLPRRIEAFDTSHLRGEACVGAMVVYEEGFCKE 422 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 + R ++ +D+ + MR +L R + + + S PD+ +L Sbjct: 423 SYRRY------ALEGRDEYSQMREMLGR----------------RAEAFDRESPPDLWLL 460 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAK-----GPKRSAGMEK-FFVKKGEALVLNMR 523 DGG GQ+ AQ +++ L + II+IAK R+ G K E + L Sbjct: 461 DGGLGQIRLAQEIIESLG--ANVEIIAIAKEKIDAKAHRAKGAAKDILRTPTEEIRLLPS 518 Query: 524 DPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMIS 582 D L +Q++RDE HRFAIT HR+++ KK L EI GI + + LL FG+ + I Sbjct: 519 DKRLQLLQKIRDEVHRFAITYHRQQKLKKDRQIDLLEIKGIKKGKLKRLLDFFGSFEAIR 578 Query: 583 RSSPETLASIEGISKKIACKIYNH 606 +S E L + +S+ A I Sbjct: 579 EASFEELCKV--VSEGEARAILEA 600 >gi|15643035|ref|NP_228078.1| excinuclease ABC subunit C [Thermotoga maritima MSB8] gi|8134799|sp|Q9WYA3|UVRC_THEMA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|4980761|gb|AAD35353.1|AE001708_21 excinuclease ABC, subunit C [Thermotoga maritima MSB8] Length = 557 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 159/602 (26%), Positives = 279/602 (46%), Gaps = 58/602 (9%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 PE PGVY + G +Y+GKA L R++SY+ N T ++ + + + + V E Sbjct: 13 PEEPGVYIFKNK-GVPIYIGKAKRLSNRLRSYL--NPQTEKVFRIGEEADELETIVVMNE 69 Query: 67 VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126 EA +LEAN+IK+ +P++N+ L+D +PYI I+D IP + + +YFGP+ Sbjct: 70 REAFILEANLIKKYRPKYNVRLKDTDFYPYIRISDDE-IPYVEIVKRKLWDG-TYFGPYT 127 Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186 SV V + LQ+ R+C S + RPC L+ + RC GPC G + E + E + + Sbjct: 128 SVQFVRNLLEILQKIMGFRTCK-SDLKRIKRPCFLYHLGRCIGPCIG--NIESHEEAIRK 184 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFS 246 ++FLSG + + + M + D+E+A +RD L LS++ ++ Sbjct: 185 LREFLSGNMEEVFDYLKEKMETHSKMLDFENAAKYRDLLLNLSNVLESQGVVFEENINCD 244 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLS 306 + + + G G +F ++ + + R P+ ++L Sbjct: 245 VLVHAHDL-FVVLRVRNGYLVGKISFEMEGGNVEDFIREYYISGRG-----DIPKTLILE 298 Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366 + +E Y + E L A ++ +L + L Sbjct: 299 SDLDEMD-----------YSSLGFEYVGPPRSTTEEDLLEKAKKNLENELKMRGLRKEAL 347 Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426 ++ K + P RIE D SH+ G V +VV + K YR++ + + D Sbjct: 348 EELMKLLNMKDFPYRIEGIDISHLQGKYTVASLVVFEDGFPKKGDYRRYKIEQDH---PD 404 Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486 D +R V++RR+S+ P+++ +DGG GQ++AA LK++ Sbjct: 405 DYESIRTVVKRRYSK-------------------HPLPNLLFVDGGIGQVNAAIEALKEI 445 Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546 + ++ +AK + V + + L P+L + ++RDE HRFA++ HR Sbjct: 446 GKDC--PVVGLAKKEET-------VVFENREIHLPHDHPVLRLLVQIRDETHRFAVSYHR 496 Query: 547 KRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 KRR+K + S LD + GIGP+RK+ L++ FG+++ I +S E +A + G S +IA ++ + Sbjct: 497 KRREKESLRSVLDNVPGIGPIRKKKLIEHFGSLENIRSASLEEIARVIG-STEIARRVLD 555 Query: 606 HF 607 Sbjct: 556 IL 557 >gi|188996038|ref|YP_001930289.1| excinuclease ABC, C subunit [Sulfurihydrogenibium sp. YO3AOP1] gi|188931105|gb|ACD65735.1| excinuclease ABC, C subunit [Sulfurihydrogenibium sp. YO3AOP1] Length = 576 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 166/605 (27%), Positives = 278/605 (45%), Gaps = 44/605 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PE PGVY D + +Y+GKA N++ R+K++ + + + ++I + +T Sbjct: 14 KAPEEPGVYLFKDSKKQYVYIGKAVNIKNRLKNHYQQLKVDPKERKIFKESSSIEWIITK 73 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 ++ EA +LE +IK+ KP++N+ L+ S+P ++IT + P + R I+G YFGP Sbjct: 74 SDYEAFVLENELIKQYKPKYNVRLKSGSSYPMLVIT-DEEYPTVKISRKFGEIKGEYFGP 132 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F + + F LR+C R+ C + + CSGPC +IS ++Y E Sbjct: 133 FLPARTARAMKELIHKLFKLRTC--DPLPKRSLVCFDYHLGLCSGPCADKISMKEYKEDA 190 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDC 244 AK FLSG N+ ++ +N T K +E A + RD++ A+ + I ++ Sbjct: 191 KVAKAFLSGNVKNVIYELYDKVNDYTNKLMFEKAAVIRDQIKAIEMTIKKQEVIGVGVEE 250 Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304 +++ G + E + + D P+ I+ Sbjct: 251 ADIFYFSRSRAYLIIVR--GNRIVGKDELKVQNEEFEEGNETAIITDYYSKDTYIPKTII 308 Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364 +++ E+ L+ K +V+I + I++ + I + Sbjct: 309 TNKDLEDLENLKQWLLKAKNKEVEILTFLPEQVEGFIKRNIN-------------IENIE 355 Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424 LK +K +P R+E +D SH+ G VG VV K +YR+F + V Sbjct: 356 NLKSEFEKVFGFSLPNRVECFDISHLDGKFTVGSCVVWENGSMNKKEYRRFRVRT--VNY 413 Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484 DD A +R VL RRF + + + P++V++DGGKGQLS V + Sbjct: 414 IDDFASLREVLTRRFRRYKEMDNP---------------PELVLIDGGKGQLSQGLAVRQ 458 Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544 +L +EN + + SIAK E + G+ + L +L F ++RDEAHRFAIT Sbjct: 459 ELGLEN-LRVFSIAKKE------EIIYTDDGKEVRLFENQELLKFFTKIRDEAHRFAITY 511 Query: 545 HRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 +RK R+K S LD I GIG RK +L +++ T+ I ++S E L + GI ++ KI Sbjct: 512 NRKLREKEGLKSVLDNIEGIGEKRKEILYRTYKTLDNILKASDEELKKL-GIPTSVSQKI 570 Query: 604 YNHFH 608 + Sbjct: 571 KEYLK 575 >gi|254707069|ref|ZP_05168897.1| excinuclease ABC subunit C [Brucella pinnipedialis M163/99/10] gi|261314538|ref|ZP_05953735.1| excinuclease ABC subunit C [Brucella pinnipedialis M163/99/10] gi|261303564|gb|EEY07061.1| excinuclease ABC subunit C [Brucella pinnipedialis M163/99/10] Length = 525 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 230/445 (51%), Positives = 307/445 (68%), Gaps = 3/445 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + G VLYVGKA NL+KR+ +Y H++RIT MI + + F VT Sbjct: 81 KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 140 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T H+ P ++KHR + + +G YFG Sbjct: 141 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 200 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TIN+LQR F LR+C DSVF RTRPCLL+QIKRCS PCT EIS E Y Sbjct: 201 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 260 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 V EAK FLSG + ++K+ +A M A+ D+E A ++RDRLAALSH+Q+H Sbjct: 261 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 320 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F+++ + CIQ FF GQN G +F K DS A++L FL QFY DKPCP Sbjct: 321 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 380 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +LLSE EE SL+ + + G+KV+++VP++GEK+++++ AL NA + ++L+ Sbjct: 381 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 440 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 S +L+ + F LP P+RIE+YDNSHIMG +AVG M+V G GFVKNQYRKFN+ Sbjct: 441 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 500 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKN 445 D+ DD MMR V+ERRFS+L+K Sbjct: 501 DITPGDDFGMMREVIERRFSRLVKE 525 >gi|126179268|ref|YP_001047233.1| excinuclease ABC subunit C [Methanoculleus marisnigri JR1] gi|125862062|gb|ABN57251.1| Excinuclease ABC subunit C [Methanoculleus marisnigri JR1] Length = 516 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 165/553 (29%), Positives = 257/553 (46%), Gaps = 40/553 (7%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + ++ +P PG Y D G ++YVGKA NL++R+ SY ++ + +++ I + F Sbjct: 2 IDTQSLPTEPGCYLFSDSEGTIIYVGKAKNLRRRVSSYFSRHDLDPKTGRLVAAIAGLDF 61 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT EVEA +LE +IK+ +P++NI L+D K + YI IT P ++ R G Sbjct: 62 IVTDNEVEAFILENTLIKKHQPKYNIDLKDAKRYAYIHIT-DEPYPRIHTARQP-DGNGR 119 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 Y+GPF S E + L+ F LRSC R R I CS PCTG I ++Y Sbjct: 120 YYGPFVSAREREDLLRLLKSLFGLRSCRRLPRRPCLRA----HIGSCSAPCTGRIGEDEY 175 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E V A+ L G L + M + +++YE A+ R+++ AL ++ + Sbjct: 176 RERVRRAEAVLKGDIAGLIRTLREEMAASAERQEYERAMELRNQITALEGLRERQHV--D 233 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 R ++ +A T F + + L FL ++Y D P Sbjct: 234 RQKTYNEDIVNYIASEGTVFLMLFNVDRGTLAGKREYTFDETEGFLEEFLARYYADHEPP 293 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 E ++L + + G KV++ VP++GEK+ +++ N + Sbjct: 294 EEVILPVPVD--DAVAGYLSHLRGTKVRVVVPQRGEKKNLLDLVKKNVEIAFFGDRIK-- 349 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 L + + LP +P IE +D SH+ G + VG MV K YR+F + Sbjct: 350 -----LDELKRHLHLPDLPVAIECFDISHLSGTAMVGSMVRFLWGKPDKRNYRRFRIRT- 403 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 V+ DD A + V+ RR+S+L K +PD++++DGGKGQL+AA Sbjct: 404 -VEGVDDFAAIAEVVRRRYSRLQKEG--------------GEFPDLILIDGGKGQLAAAT 448 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 VL+ L + ++ I +IAK + E F L L + F+Q +RDEAHRF Sbjct: 449 AVLRDLGI--KVPIAAIAKREE-----EVFVPGFSHPLPLEKHEKASLFLQEIRDEAHRF 501 Query: 541 AITTHRKRRKKAA 553 AIT HR RKK Sbjct: 502 AITYHRTLRKKTV 514 >gi|20092138|ref|NP_618213.1| excinuclease ABC subunit C [Methanosarcina acetivorans C2A] gi|30173457|sp|Q8TKS2|UVRC_METAC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|19917360|gb|AAM06693.1| excinuclease ABC, subunit C [Methanosarcina acetivorans C2A] Length = 516 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 183/556 (32%), Positives = 276/556 (49%), Gaps = 46/556 (8%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + E +P PG Y D G VLYVGKA +L+KR+ SY +H + T ++ + F Sbjct: 2 IDLEALPHLPGCYLFKDEEGVVLYVGKAKDLKKRVSSYFQKRDHDPKTTSLVQAARGLDF 61 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT TEVEALLLE +IK+ PR+NILL+D K + I +T K P + R ++ Sbjct: 62 IVTNTEVEALLLENTLIKKHWPRYNILLKDSKRYACIHLT-GEKFPRIRIARKNTGDG-E 119 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 +FGPF S + +++TF LR+C + +R CL + I CSGPC G IS E+Y Sbjct: 120 FFGPFVSAKERDYIFEVVRKTFQLRTCK----KMPSRACLRYHIGACSGPCIGSISEEEY 175 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--- 237 E V A L G L E + + M + K+ +E A+ RD ++AL ++Q + Sbjct: 176 GEKVKRATSVLKGNIGELIESMEKEMKKMAAKQMFEQAMALRDEISALEYLQEKQNMERQ 235 Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 + D + N + + G + + L FL Q+Y++ Sbjct: 236 KKHDEDILNYIVRDNTVYLMLFKVYKGTLEDKQDYVFAFGED-----FLQEFLVQYYSEN 290 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 PE +++ + EE+ + G KVK+TVPKQGEK+++++ AL N Sbjct: 291 DPPEELIVPQVLEESLV--EFLAHVKGKKVKVTVPKQGEKKELLDLALKNVEIGFFGDRK 348 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 L+ K +LP +P IE +D SH+ G S VG MV K+ YR+F Sbjct: 349 K-------LESLQSKLSLPKLPNVIECFDISHLSGTSTVGSMVQFRGGRPDKHNYRRF-- 399 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 V+ DD A + V+ RR+S+L++++ PD++I+DGGKGQLS Sbjct: 400 KIESVEGIDDFASIAEVVRRRYSRLLEDK--------------HEMPDLIIIDGGKGQLS 445 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 +A L+KL + R+ IISIAK + E + L + + F+Q +RDEA Sbjct: 446 SAFQELRKLKI--RVPIISIAKREE-----ELYVPGLKSPLPIKRNEKASLFVQEIRDEA 498 Query: 538 HRFAITTHRKRRKKAA 553 HRFAIT +R R+K+ Sbjct: 499 HRFAITYNRLLRQKSL 514 >gi|317051284|ref|YP_004112400.1| excinuclease ABC subunit C [Desulfurispirillum indicum S5] gi|316946368|gb|ADU65844.1| excinuclease ABC, C subunit [Desulfurispirillum indicum S5] Length = 604 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 170/626 (27%), Positives = 288/626 (46%), Gaps = 49/626 (7%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 EQ P+ PGVY M A +LYVGKA +L KR++SY+ ++ +I M+S + + + Sbjct: 8 EQAPDAPGVYTMYAGADTILYVGKAKSLIKRLRSYL-ASELPVKIARMVSLVERVEYVQV 66 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 E EA +LE +IK+ +PR+N LLRDDK++P+I I +H P + R YFG Sbjct: 67 FNENEAFILENTLIKQHQPRYNTLLRDDKTYPFIRIDFRHPYPRMTVVRKIKPDGARYFG 126 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PF V + L+ + LRSC+D+ + R++PC+ +I C PC + E Sbjct: 127 PFVHGSGVFRLFRLLEHIYKLRSCSDTELQKRSKPCIEHEIGNCLAPCVFSVKDTYQAEL 186 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD 243 + F G + +++ M +A D+E A RDRLA++ + N + + Sbjct: 187 ME-LVDFFRGKSRATVQRMEDQMKRAAATLDFERAAEIRDRLASIHKVINAQMVLDCAGE 245 Query: 244 CFSLYHNK-----NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 +Y+ + + G+ G+ L S T+A+ ++ LR++ Sbjct: 246 NIDVYYLEKHPARDRYLASILIIRDGKLSGSYVKRLL--SCDTDAEAVAAILREYMAGLN 303 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P+ +++S E ++ VP++G+K + +E A +N + ++ Sbjct: 304 APD-LIVSNLPLPQEEQEHYEAFLKHQRIDFRVPQRGKKVRYLELAQVNLEKHGDKQAQE 362 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E S M K + YD S G +G M V + + + YR F L Sbjct: 363 EASELMQRLGLAKLERME-------CYDISAFQGSYPIGSMSVWKDGELLPSAYRLFRLE 415 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 DD M+ L+RRF + +E + PD++++DGG QL+ Sbjct: 416 G--FDQNDDYLMIARTLQRRFQGSLASESH---------------PDLILIDGGASQLNM 458 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAG-------MEKFFVKKGEALVLNMRDPILYFIQ 531 AQ VL++L + I +ISI+KG R + E + + + R + +Q Sbjct: 459 AQKVLEELALG--IAVISISKGRSRKSRGQESKHYDEIHIPGRKNPIAVRGRS-VYRVLQ 515 Query: 532 RLRDEAHRFAITTH-RKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 LRDEAHRF IT H R R +++ S L I GIGP + +L +F + + I + + + L Sbjct: 516 HLRDEAHRFGITAHSRGRDRESLTSSLLAIPGIGPKSLQKILATFSSYEDILQ-NQQQLE 574 Query: 591 SIEGISKKIACKIYNHFHKN-TSHTP 615 ++ G ++A + + ++ TP Sbjct: 575 ALCG--DRVASALVQYLQQHAEPSTP 598 >gi|296272674|ref|YP_003655305.1| excinuclease ABC subunit C [Arcobacter nitrofigilis DSM 7299] gi|296096848|gb|ADG92798.1| excinuclease ABC, C subunit [Arcobacter nitrofigilis DSM 7299] Length = 610 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 187/637 (29%), Positives = 309/637 (48%), Gaps = 60/637 (9%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54 +Q+P GVYQ D G +LYVGKA L+ R+KSY ++ RI MI+Q Sbjct: 6 KLKQLPNDAGVYQYFDKDGHLLYVGKAKVLKNRVKSYFKFTPELRPADKLGPRIYKMITQ 65 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114 + + + V E +AL+LE ++IK+LKP++NILLRDDK++PYI + P L R Sbjct: 66 VESCEWIVVPNEHDALILENSLIKQLKPKYNILLRDDKTYPYIYVDLNEDFPRLEITRKV 125 Query: 115 STIQG-SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 YFGP++ ++S+ TF L + CL FQIK+C PC Sbjct: 126 LKGSNIKYFGPYS--TGARDILDSIYETFPLVQKKACI--KGKEACLFFQIKKCLAPCEN 181 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 IS E+Y ++++ +++ + + + + M + + + +E A+ RDR+ + + Sbjct: 182 RISKEEYANILNDSMEYIYNKSKLISK-LKVKMQEYSDEFRFEEAMKIRDRIKTIEKSEI 240 Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTD----SESTNAQIL 286 + +D F++ + + A I F G+ + FLK++ E + Sbjct: 241 KTGMDLATNDNLDIFAIKNINSKAVIVRMFIRDGKLASSSHDFLKSNVEESEEFDFEEAY 300 Query: 287 SYFLRQFYTDK--PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344 + +Y++ P+ IL+ +E + +E ++ K+ I PK G+KR I+ A Sbjct: 301 KRAIINYYSNDIPIIPKEILIGDELTDIEDVEEFLKNKFTKKINIINPKVGKKRDIVGVA 360 Query: 345 LINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGE 404 L N ++ + + ++ + F L +P R+E YDNSH+MG + VG MVV Sbjct: 361 LNNCDE--LLRIDSTKGTNTLYEEIKELFNLSQVPNRVESYDNSHMMGQATVGAMVVWDN 418 Query: 405 NGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWP 464 + F+K+ +R +NL D+ + MR +L RR KN P Sbjct: 419 DKFLKSDFRHYNLE-----AHDEYSQMREMLIRRVESFEKN----------------PAP 457 Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAK-----GPKRSAG--MEKFFVKKGEA 517 D+ I+DGG L A +++ + V ++ II++AK R+ G + K+G Sbjct: 458 DLWIIDGGSTLLKLAYDIVESVGV--KLDIIAVAKEKIDFKAHRAKGAAKDIVHYKQGNE 515 Query: 518 L---VLNMRDPILYFIQRLRDEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQ 573 L D L+F+QR RDEAHRF I H+K +R + L I GIG + + LL Sbjct: 516 FKSVKLLTSDRRLHFVQRQRDEAHRFVINFHKKQKRAEDKQISLLNIKGIGEAKVKKLLL 575 Query: 574 SFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 FG+ + I +S ETL + +++K + I NHF++N Sbjct: 576 YFGSFEKIKEASIETLKEV--LNEKDSILISNHFNQN 610 >gi|52548591|gb|AAU82440.1| excinuclease ABC subunit C [uncultured archaeon GZfos17F1] Length = 515 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 175/551 (31%), Positives = 279/551 (50%), Gaps = 46/551 (8%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG Y D A ++YVGKA NL+KR+ SY + + +I + +++ F VT + Sbjct: 7 LPENPGCYLFKDAADNIIYVGKAKNLKKRVHSYFQRHERDPKTEVLIEKADSVDFIVTDS 66 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E+EAL+LE +IKR +PR+NI L+D KS+ YI IT + P + R S GS+FGPF Sbjct: 67 ELEALILENTLIKRHQPRYNIDLKDAKSYAYIQIT-DEEFPRIGIARR-SDGSGSFFGPF 124 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + ++ +++TF +RSC R R CL + I CS PC G+ISSE+Y + V Sbjct: 125 VTAKERDYILSVVKKTFKMRSCR----RLTKRACLRYHIGSCSAPCIGKISSEEYRKQVA 180 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNRM 242 A+ L G +L +++ M + ++++++E A+ RD++AA+ H+ Sbjct: 181 RAQAHLRGNTSDLIRSLSQEMAEKSMEQEFEFAMELRDQIAAIEHLSERQYVDRQKNYDE 240 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D + + + + G F +++ FL Q+Y++ P Sbjct: 241 DVINYVKSDGKVYLMLFNVYKGMLADKQEFVF-----DEREEVIDEFLVQYYSEHDPPPE 295 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 ++L + + ++ ++ G +V+IT+PK+GEK+K+++ N S Sbjct: 296 LILPSQV--SDVIPDFLSERGGRRVRITIPKRGEKKKLLDLVGKNIEISFFGGQIK---- 349 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 L+ LP +P IE +D SH+ G S V MV K YR+F + V Sbjct: 350 ---LEALKDLLGLPRVPMVIECFDISHLSGTSMVASMVQYRSGKPDKRNYRRFKIKT--V 404 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 + DD A + V+ RR+S+L K + +PD+VI+DGGKGQLSAA+G Sbjct: 405 EKIDDFAAIAEVVRRRYSRLKKED--------------GEFPDLVIIDGGKGQLSAARGE 450 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 ++ L + RI IISIAK + E + L + F+Q +RDEAHRFA+ Sbjct: 451 IEGLGL--RIPIISIAKREE-----EIYVPGLTHPLPADRNAKASLFVQEIRDEAHRFAV 503 Query: 543 TTHRKRRKKAA 553 HR R+KA Sbjct: 504 AYHRLLRRKAV 514 >gi|73670178|ref|YP_306193.1| excinuclease ABC subunit C [Methanosarcina barkeri str. Fusaro] gi|119367667|sp|Q468S9|UVRC_METBF RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|72397340|gb|AAZ71613.1| Excinuclease ABC subunit C [Methanosarcina barkeri str. Fusaro] Length = 519 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 184/556 (33%), Positives = 276/556 (49%), Gaps = 46/556 (8%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + E +P PG Y + G V+YVGKA +L+KR+ SY H + +I + F Sbjct: 2 IDLEALPHLPGCYLFKNEEGTVIYVGKAKDLKKRVSSYFQKREHDPKTASLIEAVRGFDF 61 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT TEVEA LLE +IK+ PR+NILL+D K + I +T + K P + R GS Sbjct: 62 IVTNTEVEAFLLENTLIKKHWPRYNILLKDSKRYACIHLT-EEKFPRIRLSR-KKADNGS 119 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 +FGPF S + +++TF LR+C + R CL + I CSGPC G IS+E Y Sbjct: 120 FFGPFVSAKERDYIFEVVRKTFQLRTCK----KMPKRACLRYHIAACSGPCIGAISAEDY 175 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--- 237 E V +A L G L E + ++M + ++ +E A+ RD +AAL ++Q + Sbjct: 176 AEKVKKAASVLKGNIRELIESMEKDMRELASRQQFEQAMALRDEIAALEYLQEKQNMERQ 235 Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 + D + + + + G + L FL Q+Y++ Sbjct: 236 KKHNEDILNYIVRDDTVYLMLFKVYKGTLEDKQDYVFAFGEN-----FLEEFLVQYYSEN 290 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 PE ++L E EE+ + G KVK+TVPKQGEK+++++ AL N Sbjct: 291 EPPEELILPEPLEESLV--DFLSHVKGTKVKVTVPKQGEKKELLDLALKNVEIGFFGDRK 348 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 L+ K +LP +P IE +D SH+ G S VG MV K+ YR+F Sbjct: 349 K-------LEALQSKLSLPKLPNVIECFDISHLSGTSTVGSMVQFRGGRPDKHNYRRF-- 399 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 V+ DD A + V+ RR+S+L++++ +L PD++I+DGGKGQLS Sbjct: 400 KIESVEGIDDFASIAEVVRRRYSRLLEDKHDL--------------PDLIIIDGGKGQLS 445 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 +A L+KL V R+ +ISIAK + E + L + + F+Q +RDEA Sbjct: 446 SAFQELRKLKV--RVPLISIAKREE-----EIYVPGIKSPLPIKKEEKASLFVQEIRDEA 498 Query: 538 HRFAITTHRKRRKKAA 553 HRFAIT +R R+K+ Sbjct: 499 HRFAITYNRLLRQKSM 514 >gi|15594802|ref|NP_212591.1| excinuclease ABC subunit C [Borrelia burgdorferi B31] gi|218249718|ref|YP_002374968.1| excinuclease ABC, C subunit [Borrelia burgdorferi ZS7] gi|226321767|ref|ZP_03797293.1| excinuclease ABC, C subunit [Borrelia burgdorferi Bol26] gi|8134793|sp|O51413|UVRC_BORBU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|226695575|sp|B7J223|UVRC_BORBZ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|2688360|gb|AAC66813.1| excinuclease ABC, subunit C (uvrC) [Borrelia burgdorferi B31] gi|218164906|gb|ACK74967.1| excinuclease ABC, C subunit [Borrelia burgdorferi ZS7] gi|226232956|gb|EEH31709.1| excinuclease ABC, C subunit [Borrelia burgdorferi Bol26] Length = 603 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 167/605 (27%), Positives = 287/605 (47%), Gaps = 32/605 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P G Y+ML+ ++LY+GKA NL+ R+KSY N +H+I ++ + +I T Sbjct: 14 KLPTTSGCYKMLNENKKILYIGKAKNLRSRVKSYFLEKN-SHKIKILMKNVKSIEVITTN 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK KP +N+ L+D K +P + IT K P ++K R + YFGP Sbjct: 73 SEYEALLLECNLIKTHKPDYNVKLKDGKGYPMVRIT-HEKYPRIFKTRKIINDKSEYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F +V +++ ++ + +TF +R C + PCL + + +C G C E ++Y + + Sbjct: 132 FTNVKKLDQVLDFINKTFKIRKCK----KKSNAPCLYYHMGQCLGVCYKENLEKEYQKEL 187 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 +AK L+G + +I + A KED+E+AI ++ +L I Sbjct: 188 DKAKSILNGNISEISSQIDIKLKHAIQKEDFETAIKLKEIRNSLIEINQIQIVTKTNNLN 247 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D ++ +N+ I + G+ F ++ + + + P+ Sbjct: 248 IDYVHVHPGENVNTIIVLKYRNGKLVERDANFDESICKENELILQFLIQYYTSINMIVPD 307 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 I + + +T +E + K +I + E KI+E A+ NA S + E Sbjct: 308 KIHIFLKDIDTKNVEKLINEIKNTKTEIIYKETEEILKIMEMAISNAELSLREY---ENK 364 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 L+ + +PK IE +D +H+ G V MV K YR + L+ Sbjct: 365 STKALESLKIVLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGMPFKENYRLYKLNSLL 424 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 DD ++ V+ RR+S++I N L P+++++DGGKGQL+AA Sbjct: 425 KGEIDDFKAIKEVISRRYSEIINNNLEL--------------PNLILIDGGKGQLNAALS 470 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 +LK L +EN++ + S+AK + F + + L P L +Q +RDEAHR A Sbjct: 471 ILKGLKIENKVKVCSLAKKQET-----IFLTTNKKGINLPQGHPALRILQNVRDEAHRKA 525 Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 ++KRR+K +I+GIG + +L+S GT K I S ++ ++ ++A Sbjct: 526 NGFNKKRREKITL-LYTKIHGIGEKTAQKILKSIGTYKDILPLSENEISEKIKVNVQLAK 584 Query: 602 KIYNH 606 +I Sbjct: 585 RIKEF 589 >gi|221218148|ref|ZP_03589614.1| excinuclease ABC, C subunit [Borrelia burgdorferi 72a] gi|221192096|gb|EEE18317.1| excinuclease ABC, C subunit [Borrelia burgdorferi 72a] Length = 603 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 167/605 (27%), Positives = 286/605 (47%), Gaps = 32/605 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P G Y+ML+ +VLY+GKA NL+ R+KSY N +H+I ++ + +I T Sbjct: 14 KLPTTSGCYKMLNENKKVLYIGKAKNLRSRVKSYFLEKN-SHKIKILMKNVKSIEVITTN 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK KP +N+ L+D K +P + IT K P ++K R + YFGP Sbjct: 73 SEYEALLLECNLIKTHKPDYNVKLKDGKGYPMVRIT-HEKYPRIFKTRKIINDKSEYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F +V +++ ++ + +TF +R C + PCL + + +C G C E ++Y + + Sbjct: 132 FTNVKKLDQVLDFINKTFKIRKCK----KKSNAPCLYYHMGQCLGVCYKENLEKEYQKEL 187 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 + K L+G + +I + A KED+E+AI ++ +L I Sbjct: 188 DKVKSILNGNISEISSQIDIKLKHAIQKEDFETAIKLKEIRNSLIEINQIQIVTKTNNLN 247 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D ++ +N+ I + G+ F ++ + + + P+ Sbjct: 248 IDYVHVHPGENVNTIIVLKYRNGKLVERDANFDESICKENELILQFLIQYYTSINMIVPD 307 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 I + + +T +E + K +I + E KI+E A+ NA S + E Sbjct: 308 KIHIFLKDIDTKNVEKLINEIKNTKTEIIYKETEEILKIMEMAISNAELSLREY---ENK 364 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 L+ + +PK IE +D +H+ G V MV K YR + L+ Sbjct: 365 STKALESLKIVLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGMPFKENYRLYKLNSLL 424 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 DD ++ V+ RR+S++I N L P+++++DGGKGQL+AA Sbjct: 425 KGEIDDFKAIKEVILRRYSEIINNNLEL--------------PNLILIDGGKGQLNAAIS 470 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 +LK L +EN++ + S+AK + F + + L P L +Q +RDEAHR A Sbjct: 471 ILKGLKIENKVKVCSLAKKQET-----IFLTTNKKGINLPQGHPALRMLQNVRDEAHRKA 525 Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 ++KRR+K +I+GIG + +L+S GT K I S ++ ++ ++A Sbjct: 526 NGFNKKRREKITL-LYTKIHGIGEKTAQKILKSIGTYKDILPLSENEISEKIKVNVQLAK 584 Query: 602 KIYNH 606 +I Sbjct: 585 RIKEF 589 >gi|224532505|ref|ZP_03673130.1| excinuclease ABC, C subunit [Borrelia burgdorferi WI91-23] gi|224512577|gb|EEF82953.1| excinuclease ABC, C subunit [Borrelia burgdorferi WI91-23] Length = 603 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 166/605 (27%), Positives = 285/605 (47%), Gaps = 32/605 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P G Y+ML+ ++LY+GKA NL+ R+KSY N +H+I ++ + +I T Sbjct: 14 KLPTTSGCYKMLNENKKILYIGKAKNLRSRVKSYFLEKN-SHKIKILMKNVKSIEVITTN 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK KP +N+ L+D K +P + IT K P ++K R + YFGP Sbjct: 73 SEYEALLLECNLIKTHKPDYNVKLKDGKGYPMVRIT-HEKYPRIFKTRKIINDKSEYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F +V +++ ++ + +TF +R C + PCL + + +C G C E ++Y + + Sbjct: 132 FTNVKKLDQVLDFINKTFKIRKCK----KKSNAPCLYYHMGQCLGVCYKENLEKEYQKEL 187 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 +AK L+G + +I + A KED+E AI ++ +L I Sbjct: 188 DKAKSILNGNISEISSQIDIKLKHAIQKEDFEIAIKLKEIRNSLIEINQIQIVTKTNNLN 247 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D ++ +N+ I + G+ F ++ + + + P+ Sbjct: 248 IDYVHVHPGENVNTIIVLKYRNGKLVERDANFDESICKENELILQFLIQYYTSINMIVPD 307 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 I + + +T +E + K +I + E KI+E A+ NA S + E Sbjct: 308 KIHIFLKDIDTKNVEKLINEIKNTKTEIIYKETEEILKIMEMAISNAELSLREY---ENK 364 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 L+ + +PK IE +D +H+ G V MV K YR + L+ Sbjct: 365 STKALESLKIVLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGMPFKENYRLYKLNSLL 424 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 DD ++ V+ RR+S++I N P+++++DGGKGQL+AA Sbjct: 425 KGEIDDFRAIKEVISRRYSEIINNN--------------LELPNLILIDGGKGQLNAALS 470 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 +LK L +EN++ + S+AK + F + + L P L +Q +RDEAHR A Sbjct: 471 ILKGLKIENKVKVCSLAKKQET-----IFLTTNKKGINLPQGHPALRILQNVRDEAHRKA 525 Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 ++KRR+K +I+GIG + +L+S GT K I S ++ ++ ++A Sbjct: 526 NGFNKKRREKITL-LYTKIHGIGEKTAQKILKSIGTYKDILPLSENEISEKIKVNVQLAK 584 Query: 602 KIYNH 606 +I Sbjct: 585 RIKEF 589 >gi|225549531|ref|ZP_03770497.1| excinuclease ABC, C subunit [Borrelia burgdorferi 118a] gi|225369808|gb|EEG99255.1| excinuclease ABC, C subunit [Borrelia burgdorferi 118a] Length = 603 Score = 379 bits (972), Expect = e-102, Method: Composition-based stats. Identities = 165/605 (27%), Positives = 285/605 (47%), Gaps = 32/605 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P G Y+ML+ ++LY+GKA NL+ R+KSY N +H+I ++ + +I T Sbjct: 14 KLPTTSGCYKMLNENKKILYIGKAKNLRSRVKSYFLEKN-SHKIKILMKNVKSIEVITTN 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK KP +N+ L+D K +P + IT K P ++K R + YFGP Sbjct: 73 SEYEALLLECNLIKTHKPDYNVKLKDGKGYPMVRIT-HEKYPRIFKTRKIINDKSEYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F +V +++ ++ + +TF +R C + PCL + + +C G C E ++Y + + Sbjct: 132 FTNVKKLDQVLDFINKTFKIRKCK----KKSNAPCLYYHMGQCLGVCYKENLEKEYQKEL 187 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 + K L+G + +I + A KED+E+AI ++ +L I Sbjct: 188 DKVKSILNGNISEISSQIDIKLKHAIQKEDFETAIKLKEIRNSLIEINQIQIVTKTNNLN 247 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D ++ +N+ I + G+ F ++ + + + P+ Sbjct: 248 IDYVHVHPGENVNTIIVLKYRNGKLVERDANFDESICKENELILQFLIQYYTSINMIVPD 307 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 I + + +T +E + K +I + E KI+E A+ NA S + E Sbjct: 308 KIHIFLKDIDTKNVEKLINEIKNTKTEIIYKETEEILKIMEMAISNAELSLREY---ENK 364 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 L+ + +PK IE +D +H+ G V MV K YR + L+ Sbjct: 365 STKALESLKIVLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGMPFKENYRLYKLNSLL 424 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 DD ++ V+ RR+S++I N P+++++DGGKGQL+AA Sbjct: 425 KGEIDDFKAIKEVILRRYSEIINNN--------------LELPNLILIDGGKGQLNAAIS 470 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 +LK L +EN++ + S+AK + F + + L P L +Q +RDEAHR A Sbjct: 471 ILKGLKIENKVKVCSLAKKQET-----IFLTTNKKGINLPQGHPALRMLQNVRDEAHRKA 525 Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 ++KRR+K +I+GIG + +L+S GT K I S ++ ++ ++A Sbjct: 526 NGFNKKRREKITL-LYTKIHGIGEKTAQKILKSIGTYKDILPLSENEISEKIKVNVQLAK 584 Query: 602 KIYNH 606 +I Sbjct: 585 RIKEF 589 >gi|216264711|ref|ZP_03436703.1| excinuclease ABC, C subunit [Borrelia burgdorferi 156a] gi|225548682|ref|ZP_03769729.1| excinuclease ABC, C subunit [Borrelia burgdorferi 94a] gi|215981184|gb|EEC21991.1| excinuclease ABC, C subunit [Borrelia burgdorferi 156a] gi|225370712|gb|EEH00148.1| excinuclease ABC, C subunit [Borrelia burgdorferi 94a] Length = 603 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 167/605 (27%), Positives = 287/605 (47%), Gaps = 32/605 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P G Y+ML+ ++LY+GKA NL+ R+KSY N +H+I ++ + +I T Sbjct: 14 KLPTTSGCYKMLNENKKILYIGKAKNLRSRVKSYFLEKN-SHKIKILMKNVKSIEVITTN 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK KP +N+ L+D K +P + IT K P ++K R + YFGP Sbjct: 73 SEYEALLLECNLIKTHKPDYNVKLKDGKGYPMVRIT-HEKYPRIFKTRKIINDKSEYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F +V +++ ++ + +TF +R C + PCL + + +C G C E ++Y + + Sbjct: 132 FTNVKKLDQVLDFINKTFKIRKCK----KKSNAPCLYYHMGQCLGVCYKENLEKEYQKEL 187 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 +AK L+G + +I + A KED+E+AI ++ +L I Sbjct: 188 DKAKSILNGNISEISSQIDIKLKHAIQKEDFETAIKLKEIRNSLIEINQIQIVTKTNNLN 247 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D ++ +N+ I + G+ F ++ + + + P+ Sbjct: 248 IDYVHVHPGENVNTIIVLKYRNGKLVERDANFDESICKENELILQFLIQYYTSINMIVPD 307 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 I + + +T +E + K +I + E KI+E A+ NA S + E Sbjct: 308 KIHIFLKDIDTKNVEKLINEIKNTKTEIIYKETEEILKIMEMAISNAELSLREY---ENK 364 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 L+ + +PK IE +D +H+ G V MV K YR + L+ Sbjct: 365 STKALESLKIVLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGMPFKENYRLYKLNSLL 424 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 DD ++ V+ RR+S++I N L P+++++DGGKGQL+AA Sbjct: 425 KGEIDDFRAIKEVISRRYSEIINNNLEL--------------PNLILIDGGKGQLNAAIS 470 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 +LK L +EN++ + S+AK + F + + L P L +Q +RDEAHR A Sbjct: 471 ILKGLKIENKVKVCSLAKKQET-----IFLTTSKKGINLPQGHPALRILQNVRDEAHRKA 525 Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 ++KRR+K +I+GIG + +L+S GT K I S ++ ++ ++A Sbjct: 526 NGFNKKRREKITL-LYTKIHGIGEKTAQKILKSIGTYKDILPLSENEISEKIKVNVQLAK 584 Query: 602 KIYNH 606 +I Sbjct: 585 RIKEF 589 >gi|226321090|ref|ZP_03796632.1| excinuclease ABC, C subunit [Borrelia burgdorferi 29805] gi|226233500|gb|EEH32239.1| excinuclease ABC, C subunit [Borrelia burgdorferi 29805] Length = 603 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 166/605 (27%), Positives = 286/605 (47%), Gaps = 32/605 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P G Y+ML+ ++LY+GKA NL+ R+KSY N +H+I ++ + +I T Sbjct: 14 KLPTTSGCYKMLNENKKILYIGKAKNLRSRVKSYFLEKN-SHKIKILMKNVKSIEVITTN 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK KP +N+ L+D K +P + IT K P ++K R + YFGP Sbjct: 73 SEYEALLLECNLIKTHKPDYNVKLKDGKGYPMVRIT-HEKYPRIFKTRKIINDKSEYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F +V +++ ++ + +TF +R C + PCL + + +C G C E ++Y + + Sbjct: 132 FTNVKKLDQVLDFINKTFKIRKCK----KKSNAPCLYYHMGQCLGVCYKENLEKEYQKEL 187 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 +AK L+G + +I + A KED+E+AI ++ +L I Sbjct: 188 DKAKSILNGNISEISSQIDIKLKHAIQKEDFETAIKLKEIRNSLIEINQIQIVTKTNNLN 247 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D ++ +N+ I + G+ F ++ + + + P+ Sbjct: 248 IDYVHVHPGENVNTIIVLKYRNGKLVERDANFDESICKENELILQFLIQYYTSINMIVPD 307 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 I + + +T +E + K +I + E KI+E A+ NA S + E Sbjct: 308 KIHIFLKDIDTKNVEKLINEIKNTKTEIIYKETKEILKIMEMAISNAELSLREY---ENK 364 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 L+ + +PK IE +D +H+ G V MV K YR + L+ Sbjct: 365 STKALESLKIVLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGMPFKENYRLYKLNSLL 424 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 DD ++ V+ RR+S++I N P+++++DGGKGQL+AA Sbjct: 425 KGEIDDFKAIKEVISRRYSEIINNN--------------LELPNLILIDGGKGQLNAAIS 470 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 +LK L +EN++ + S+AK + F + + L P L +Q +RDEAHR A Sbjct: 471 ILKGLKIENKVKVCSLAKKQET-----IFLTTSKKGINLPQGHPALRILQNVRDEAHRKA 525 Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 ++KRR+K +I+GIG + +L+S GT K I S ++ ++ ++A Sbjct: 526 NGFNKKRREKITL-LYTKIHGIGEKTAQKILKSIGTYKDILPLSENEISEKIKVNVQLAK 584 Query: 602 KIYNH 606 +I Sbjct: 585 RIKEF 589 >gi|223888985|ref|ZP_03623576.1| excinuclease ABC, C subunit [Borrelia burgdorferi 64b] gi|223885801|gb|EEF56900.1| excinuclease ABC, C subunit [Borrelia burgdorferi 64b] Length = 603 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 167/605 (27%), Positives = 287/605 (47%), Gaps = 32/605 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P G Y+ML+ ++LY+GKA NL+ R+KSY N +H+I ++ + +I T Sbjct: 14 KLPTTSGCYKMLNENKKILYIGKAKNLRSRVKSYFLEKN-SHKIKILMKNVKSIEVITTN 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK KP +N+ L+D K +P + IT K P ++K R + YFGP Sbjct: 73 SEYEALLLECNLIKTHKPDYNVKLKDGKGYPMVRIT-HEKYPRIFKTRKIINDKSEYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F +V +++ ++ + +TF +R C + PCL + + +C G C E ++Y + + Sbjct: 132 FTNVKKLDQVLDFINKTFKIRKCK----KKSNAPCLYYHMGQCLGVCYKENLEKEYQKEL 187 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 +AK L+G + +I + A KED+E+AI ++ +L I Sbjct: 188 DKAKSILNGNISEISSQIDIKLKHAIQKEDFETAIKLKEIRNSLIEINQIQIVTKTNNLN 247 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D ++ +N+ I + G+ F ++ + + + P+ Sbjct: 248 IDYVHVHPGENVNTIIVLKYRNGKLVERDANFDESICKENELILQFLIQYYTSINMIVPD 307 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 I + + +T +E + K +I + E KI+E A+ NA S + E Sbjct: 308 KIHIFLKDIDTKNVEKLINEIKNTKTEIIYKETEEILKIMEMAISNAELSLREY---ENK 364 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 L+ + +PK IE +D +H+ G V MV K YR + L+ Sbjct: 365 STKALESLKIVLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGMPFKENYRLYKLNSLL 424 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 DD ++ V+ RR+S++I N L P+++++DGGKGQL+AA Sbjct: 425 KGEIDDFRAIKEVILRRYSEIINNNLEL--------------PNLILIDGGKGQLNAAIS 470 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 +LK L +EN++ + S+AK + F + + L P L +Q +RDEAHR A Sbjct: 471 ILKGLKIENKVKVCSLAKKQET-----IFLTTSKKGINLPQGHPALRILQNVRDEAHRKA 525 Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 ++KRR+K +I+GIG + +L+S GT K I S ++ ++ ++A Sbjct: 526 NGFNKKRREKITL-LYTKIHGIGEKTAQKILKSIGTYKDILPLSENEISEKIKVNVQLAK 584 Query: 602 KIYNH 606 +I Sbjct: 585 RIKEF 589 >gi|313681456|ref|YP_004059194.1| excinuclease ABC subunit c [Sulfuricurvum kujiense DSM 16994] gi|313154316|gb|ADR32994.1| Excinuclease ABC subunit C [Sulfuricurvum kujiense DSM 16994] Length = 602 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 182/625 (29%), Positives = 287/625 (45%), Gaps = 49/625 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQINNI 58 +P G+YQ LD GR+LY+GKA NL KR+KSY + + RI M+S+ + Sbjct: 8 LPHQAGIYQYLDEKGRILYIGKAKNLSKRVKSYFNLTPSLSPKATLSLRIQKMLSETVGL 67 Query: 59 RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118 + + E +AL+LE ++IK+LKP++NILLRDDK++PY+ + P R + Sbjct: 68 HYIIVENEHDALILENSLIKQLKPKYNILLRDDKTYPYLYVDMDETYPRFELTRKIIKGK 127 Query: 119 G-SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 YFGPF+ ++SL L + CL +Q+++C PC I Sbjct: 128 SIRYFGPFS--VGARDILDSLYELLKLVQKK--SCLKGKKGCLFYQMEQCLAPCEFPIPH 183 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E Y+ V + +++ + +++ M +E A++ RDR+ ++ + + Sbjct: 184 ETYLPMVTQGIEWIQNKRKLI-KQLEAKMEFYAESLRFEEALVLRDRIDRITKSELTSQI 242 Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 D F++ N+ ACI F G+ + F+ + + L FY Sbjct: 243 DLASTENYDVFAIALNEVRACILRLFIREGKVASSTHDFIPITPYFSIDEAYERTLIGFY 302 Query: 295 TDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352 ++ P IL + E ++ + +G K KI P++G K+++I+ AL NA Sbjct: 303 GNEKPPIIAPILTAHPFESNDWVQEHLTELFGKKAKIETPQRGAKKELIDLALTNAKE-- 360 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + +++ +L + AL +P+RIE++DNSH G + VG M+V F K Y Sbjct: 361 -LLRTPQPTNEHLLHSIQELLALDSLPRRIEVFDNSHHGGSATVGAMIVYENGRFDKKAY 419 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472 R ++LH +D+ MR +L RR KN PD+ +LDGG Sbjct: 420 RTYHLHE-----RDEYGQMREMLTRRIEAFEKN----------------PPPDLWVLDGG 458 Query: 473 KGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 S A +L + + IS AK + E L L D L Sbjct: 459 ATLRSLATDLLGSHGIHLDVIAISKEKIDAKAHRAKGSARDILHFAEEPLRLESSDKRLQ 518 Query: 529 FIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 FIQ LRDEAHR AIT H+K + K S L I+GI + LL FGT I++S + Sbjct: 519 FIQMLRDEAHRSAITFHKKTKLKIDQTSKLLAIHGISTPKIHRLLDYFGTFDAIAKSDFK 578 Query: 588 TLASIEGISKKIACKIYNHFHKNTS 612 TL+ + I K A I ++ N S Sbjct: 579 TLSEL--IGAKDAENIQKYYRGNIS 601 >gi|111073619|emb|CAL29482.1| excinuclease ABC subunit [Wolbachia endosymbiont of Onchocerca volvulus] Length = 550 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 201/553 (36%), Positives = 313/553 (56%), Gaps = 25/553 (4%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 + GVY+M G+VLYVGKA NL+ R+ +Y+ N + R+ M+SQI I +T E+ Sbjct: 19 QSCGVYKMTGEKGKVLYVGKAKNLKLRLSNYLRFGNLSERVKVMLSQIVKIETFLTKNEI 78 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG-SYFGPFA 126 EALLLE+ +IK LKP +NI L+D KS+PYI I+ KH P++ +HR Y+GPF Sbjct: 79 EALLLESRLIKSLKPTYNIKLKDGKSYPYITIS-KHDYPSIAQHRGKLKKGEFHYYGPFT 137 Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186 S AV++TI SLQ+ F LR C+D F RPC + ++RCS PC G+I+ + Y + + Sbjct: 138 SATAVKQTILSLQKAFLLRGCSDKKFSSTKRPCFEYHVRRCSAPCVGKIAKDDYCQSAKQ 197 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND--SIYNRMDC 244 A+ L G N+ ++E++ M + + +++YE A ++RDR+ L +Q S D Sbjct: 198 ARDTLLGRNNKVEEQLLSIMKKYSNEQNYELAAVYRDRIKLLKQVQMQPMDFSFEKDADF 257 Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE-NI 303 FS+ ++ ACI F +N G+ ++F + ++ + +ILS FL FY P I Sbjct: 258 FSIARKEDSACINLLSFRNKENYGSTSYFAENCNDHPDDEILSTFLINFYNSVNVPPVQI 317 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 + + ++E + K +K+ K ++R ++E N+ S ++L+ Sbjct: 318 YIPDFITNRKIIEQALCKITHKSIKVLYTKSNKERDLLEFVFNNSQYSLERELTDCRDSL 377 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 L+ +K F+LP++PKRIE+YDNSHI G +G MVV G+ GF+K++YRKF + Sbjct: 378 EKLEKLSKVFSLPNVPKRIEVYDNSHISGSHQIGVMVVAGQEGFLKSEYRKFTIKGE--I 435 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 + DD MMR VL +RFS IK+ PD +++DGG G +S Q VL Sbjct: 436 SGDDYKMMREVLTKRFSGKIKD----------------IIPDFLLIDGGPGHVSTVQNVL 479 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 + L ++ + + +AKG R+AG E+F++ E L ++ ++Q LR+EAHRFAI Sbjct: 480 QVLKID--VPFVCMAKGTYRNAGNERFYMLGKEEFTLENDSKVMLYLQLLRNEAHRFAIA 537 Query: 544 THRKRRKKAAYSP 556 +HRK+R K S Sbjct: 538 SHRKKRDKQFISS 550 >gi|78776619|ref|YP_392934.1| excinuclease ABC subunit C [Sulfurimonas denitrificans DSM 1251] gi|119367859|sp|Q30TI2|UVRC_SULDN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|78497159|gb|ABB43699.1| Excinuclease ABC subunit C [Sulfurimonas denitrificans DSM 1251] Length = 600 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 185/621 (29%), Positives = 298/621 (47%), Gaps = 52/621 (8%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQIN 56 +Q+P+ GVYQ D G +LY+GKA +L KR+KSY + ++N + RI+ MISQ + Sbjct: 8 KQLPDSAGVYQYFDKDGHLLYIGKAKSLAKRVKSYFNFAPKFKPNSNLSSRISKMISQTH 67 Query: 57 NIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST 116 +++ V +E +AL+LE ++IK+L P++NILLRDDK++PYI I + K P R Sbjct: 68 TLQYIVVNSEHDALILENSLIKQLMPKYNILLRDDKTYPYIYIDNSQKYPRFEMTRKIIK 127 Query: 117 IQG-SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEI 175 Y+GPF+ ++S+ L S+ + CL QI RC GPC + Sbjct: 128 SSNIKYYGPFS--VGARDILDSIYELCALVQKKGSL--TSKKLCLYHQINRCLGPCELHV 183 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 S E Y + AK+ + + +K+ M +E A RDR +S + + Sbjct: 184 SDEDYQRELDLAKELILNKKILI-KKLQEKMFYYADNLRFEEATALRDRCERISRSEIKS 242 Query: 236 DSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 + + D F + +++ A + F G+ + +++ ++ + Sbjct: 243 EIDFASSENYDIFVIASSQSRAVVVRIFMREGKIISSSHDYIQLHEGYDEDELYQRAIMG 302 Query: 293 FYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR 350 FY+ P IL++ E E +E + K I VPK +++++I+ AL+ + Sbjct: 303 FYSHGKPPIIAPILVASEFEGKDSIEEFLSTLFEKKADIKVPKTAKRKQLIDLALL--NA 360 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + K T+ + IL + K F+L +P R+E +DNSH+ G + VG M V F K Sbjct: 361 AELLKNETKENQSGILDEIKKLFSLQRVPSRVETFDNSHMSGVATVGAMSVYENGAFDKK 420 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YR ++L +D+ A MR +L RR +KN PD+ ILD Sbjct: 421 SYRIYHLE-----ARDEYAQMREMLLRRVESFLKN----------------PPPDLWILD 459 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAK-----GPKRSAGMEK-FFVKKGEALVLNMRD 524 GG L+ A +L+ V I +I+IAK R+ G K + + L D Sbjct: 460 GGSTLLNLALSILESSGV--NIDVIAIAKEKVDAKAHRAKGKAKDIIYSREDIFKLLDSD 517 Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISR 583 L+F+Q+LRDEAHR AI H+K + K+ S L + GI + LL+ F T I Sbjct: 518 KRLHFVQKLRDEAHRCAINFHKKTKLKSDNESKLLTLKGISQAKIIKLLKHFTTFDAIKE 577 Query: 584 SSPETLASIEGISKKIACKIY 604 +S E L+++ ++ K A I Sbjct: 578 ASVEELSTV--LNLKDANIIK 596 >gi|187918322|ref|YP_001883885.1| excinuclease ABC subunit C [Borrelia hermsii DAH] gi|238689289|sp|B2S0F9|UVRC_BORHD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|119861170|gb|AAX16965.1| excinuclease ABC subunit C [Borrelia hermsii DAH] Length = 602 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 165/608 (27%), Positives = 282/608 (46%), Gaps = 33/608 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 +++P G Y+M ++LY+GKA NL+ R+K+Y +H+ ++ + NI Sbjct: 11 KVQELPTTSGCYKMYSQNNKILYIGKAKNLRARVKNYFLK-RISHKTKILMRNVANIEVI 69 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T +E EALLLE N+IK KP +NI L+DDK +P I IT K P ++K R Y Sbjct: 70 TTNSEYEALLLECNLIKEYKPDYNIKLKDDKGYPMIRITC-EKYPRIFKTRKIINDGSEY 128 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + ++ ++ + +TF R C PCL F + +C G C E E+Y Sbjct: 129 FGPYVNAKNLDLVLDLINKTFKTRKCKKKS----KTPCLYFHMGQCLGVCYREDLEEQYK 184 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + V + + L+G L ++ M +A KED+E+AI ++ +L I Sbjct: 185 KEVDKIRHILNGKISKLLDETEIKMKEAIKKEDFEAAIKLKETKRSLIEISQTQIITRMN 244 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D ++ +L I + G+ F ++ E + Sbjct: 245 KLSADYIYIHQTDSLNAIVILKYKDGKLVEKDINFDESIYEEDELTAKFITQYYTALNMI 304 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P I + ++ E ++ + K +I + E KI+E A+ NA + + + Sbjct: 305 VPNKIYIFKKIETENIT-KLINELKNTKTEIICEETKETIKIMEMAISNAKIALREYDNE 363 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + L+ + +PK IE +D SH+ G V +V K+ YR + ++ Sbjct: 364 KN---RALESLKNILEMTKLPKTIEGFDISHLNGHKTVASLVSFKMGKPFKDGYRVYKIN 420 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + DD ++ V+ RR+S+LI + + PD++++DGGKGQLSA Sbjct: 421 SLNNGEIDDLKAIKEVISRRYSKLINEQ--------------LALPDLILIDGGKGQLSA 466 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A +LK L +EN + + ++AK + F K + + L+ +P L +Q +RDEAH Sbjct: 467 AYSILKGLKIENEVIVCALAKKEEI-----IFLPNKTQGIKLSKGNPALQILQNVRDEAH 521 Query: 539 RFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 R A + +R R+ + +I GIG + + +L++ GT K I + + +A I+ K Sbjct: 522 RRANSFNRTLRRNIKLNY-SKIKGIGEEKAKNILKTLGTYKDILLLNEDEIAKKMKINIK 580 Query: 599 IACKIYNH 606 +A KI Sbjct: 581 MAKKIKKF 588 >gi|224533520|ref|ZP_03674109.1| excinuclease ABC, C subunit [Borrelia burgdorferi CA-11.2a] gi|224513193|gb|EEF83555.1| excinuclease ABC, C subunit [Borrelia burgdorferi CA-11.2a] Length = 603 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 165/605 (27%), Positives = 284/605 (46%), Gaps = 32/605 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P G Y+ML+ ++LY+GKA NL+ R+KSY N +H+I ++ + +I T Sbjct: 14 KLPTTSGCYKMLNENKKILYIGKAKNLRSRVKSYFLEKN-SHKIKILMKNVKSIEVITTN 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK KP +N+ L+D K +P + IT K P ++K R + YFGP Sbjct: 73 SEYEALLLECNLIKTHKPDYNVKLKDGKGYPMVRIT-HEKYPRIFKTRKIINDKSEYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F +V +++ ++ + +TF +R C + PCL + + +C G C E ++Y + + Sbjct: 132 FTNVKKLDQVLDFINKTFKIRKCK----KKSNAPCLYYHMGQCLGVCYKENLEKEYQKEL 187 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 + K L+G + +I + A KED+E+AI ++ +L I Sbjct: 188 DKVKSILNGNISEISSQIDIKLKHAIQKEDFETAIKLKEIRNSLIEINQIQIVTKTNNLN 247 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D ++ +N+ I + G+ F ++ + + + P+ Sbjct: 248 IDYVHIHPGENVNTIIVLKYRNGKLVERDANFDESICKENELILQFLIQYYTSINMIVPD 307 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 I + + +T +E + K +I + E KI+E A+ NA S + E Sbjct: 308 KIHIFLKDIDTKNVEKLINEIKNTKTEIIYKETEEILKIMEMAISNAELSLREY---ENK 364 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 L+ + +PK IE +D +H+ G V MV K YR + L+ Sbjct: 365 STKALESLKIVLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGMPFKENYRLYKLNSLL 424 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 DD ++ V+ RR+S++I N P+++++DGGKGQL+AA Sbjct: 425 KGEIDDFKAIKEVILRRYSEIINNN--------------LELPNLILIDGGKGQLNAAIS 470 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 +LK L +EN++ + S+AK + F + + L P L +Q +RDEAHR A Sbjct: 471 ILKGLKIENKVKVCSLAKKQET-----IFLTTNKKGINLPQGHPALRMLQNVRDEAHRKA 525 Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 ++KRR+K +I+GIG + +L+S GT K I S ++ + ++A Sbjct: 526 NGFNKKRREKITL-LYTKIHGIGEKTAQKILKSIGTYKDILPLSENEISEKIKANVQLAK 584 Query: 602 KIYNH 606 +I Sbjct: 585 RIKEF 589 >gi|154173633|ref|YP_001407804.1| excinuclease ABC subunit C [Campylobacter curvus 525.92] gi|153792990|gb|EAU00017.2| excinuclease ABC, C subunit [Campylobacter curvus 525.92] Length = 607 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 178/626 (28%), Positives = 283/626 (45%), Gaps = 64/626 (10%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQINN 57 +P GVYQ D R+LYVGKA L+ R+KSY S+ + RI MIS+ + Sbjct: 8 SLPSLSGVYQYFDSQNRLLYVGKAKILKNRVKSYFKFTPELAASDKVSPRIAKMISEAVH 67 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117 + + VT +E +AL+LE + IK+LKP++NILLRDDK++PYI I + P R Sbjct: 68 LEYIVTPSEADALILENSFIKQLKPKYNILLRDDKTYPYIFINLNDEFPRFEITRKVVKG 127 Query: 118 QG-SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176 YFGP+ S + + +L F L + V + CL Q+ RC PC G+IS Sbjct: 128 SNIRYFGPYFSGAG--ELLEALYLNFNLVQKSSCV--KGKKACLFHQLGRCCAPCEGKIS 183 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 E Y + V +A L N + + M+ E++E A RD++ L ++Q + Sbjct: 184 KEDYDKIVQDALAALQNPNLLIAR-LEELMHSYAKAENFEQAAATRDKIETLKNMQTKVE 242 Query: 237 SIYNRMDCFSLY--HNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 +++ F Y + F + ST+ + + Sbjct: 243 VDLAKLEDFEAYAVVSDKNMLCAVRFSVQNGKINGVKTTITGAKGSTDEDVSEAYRHIIL 302 Query: 295 TDKPC-----PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH 349 P I + E+ L+E +++ K I PK G+KRKI E A NA Sbjct: 303 ESFPAGQPVTTGKIYTLKSFEDAGLVEQILNERHKRKFSIVSPKIGDKRKICEIAAKNAE 362 Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 S ++ L ++ +L++ + F+L H P IE +DNSH+ G + V M+ + + K Sbjct: 363 VSISKYL--KMHDNRLLEEIKEYFSLTHTPYVIEAFDNSHLFGEANVAAMIRYSQGEWDK 420 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 + YR ++ ++D MR L R + K S PD+ ++ Sbjct: 421 SGYRHMHVK-----AKNDYEQMRESLIARALRFDK----------------LSPPDLWLI 459 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAK-----GPKRSAG--MEKFFVKKGEALVLNM 522 DGG+ L+ A+ +L + +I+IAK R+ G +K + G L+ Sbjct: 460 DGGEALLNLAREILASYG--ANVDVIAIAKEKIDAKAHRAKGEAKDKIYTPNG-TFSLSP 516 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKK-----AAYSPLDEINGIGPLRKRLLLQSFGT 577 D L F Q+LRDE+HRF I+ HRK R+K + S L GI P L+ +G+ Sbjct: 517 NDKKLQFFQKLRDESHRFVISFHRKTRQKEELQSSKLSRL----GISPGSIAKLIGFYGS 572 Query: 578 VKMISRSSPETLASIEGISKKIACKI 603 I + + +A + +K +A K+ Sbjct: 573 FDKIHEADLDEIAKVT--NKSVAQKL 596 >gi|152993484|ref|YP_001359205.1| excinuclease ABC subunit C [Sulfurovum sp. NBC37-1] gi|151425345|dbj|BAF72848.1| excinuclease ABC, C subunit [Sulfurovum sp. NBC37-1] Length = 598 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 176/621 (28%), Positives = 288/621 (46%), Gaps = 54/621 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSY--MHSN-----NHTHRITHMISQINN 57 +P PGVYQ D ++LYVGKA +L+ RIKSY + RI M+ + Sbjct: 7 SLPNSPGVYQYFDDKDKLLYVGKAKSLKNRIKSYWRFTPTFIPNPGQSPRIIKMLHEAVR 66 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST- 116 + + + +E +AL+LE ++IK+LKP++NILLRDDK++PYI I + P R Sbjct: 67 LDYIIVESEEDALILENSLIKQLKPKYNILLRDDKTYPYIYIDESEAYPRFEITRKVVKG 126 Query: 117 IQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176 +Y+GPF S +++L F L + CL +QIK+C PC G++S Sbjct: 127 KDITYYGPFPSGG--RALLDALYEVFPLVQKK--SCLREGKACLFYQIKKCLAPCEGKVS 182 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + Y E V EAK+ ++ + L + + M + ++E +E A RD + A+S + ++ Sbjct: 183 KDAYAEIVKEAKQAITKRSI-LTKTLQEKMQKLAVQERFEEAAALRDSIEAISSLHISSN 241 Query: 237 SIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 +D F++ + I F G+ + + + + L +F Sbjct: 242 IDLANQMDLDIFAILNGDERGVIVKLFMRNGKIISSAYSYFRHTHIFDCNEAYRQALLEF 301 Query: 294 YTDKPC--PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 YT + IL + E+ + + ++ K+ I P++G K K+ + AL N Sbjct: 302 YTIDTPYVSKEILTAHHFEDALQVARTLSSRFEKKISIETPQRGPKAKLAKLALQNCKE- 360 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 L + + ++ + L IP R+E +DNSH+MG + VG MVV E + K+ Sbjct: 361 ---LLKKKDNDTIMEQKIADLLELSTIPYRVESFDNSHMMGAATVGGMVVWDEGKWDKHS 417 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YR++ LH +D+ M+ +L RR + PD+ ILDG Sbjct: 418 YRRYELH-----ARDEYGQMKEMLTRRIADFKTQ----------------PAPDLWILDG 456 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAK-----GPKRSAGMEK-FFVKKGEALVLNMRDP 525 GQ + + + + + +I+IAK R+ G K + L D Sbjct: 457 --GQANLNLALSLLKDAQINLDVIAIAKEKLDAKAHRAKGAAKDILYTAARIIELKPNDK 514 Query: 526 ILYFIQRLRDEAHRFAITTHR-KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 L++IQR RDEAHR+AI H+ K+RK+ L GIG + L+ FGT I + Sbjct: 515 RLHWIQRQRDEAHRYAIAYHQNKKRKEDTQVSLLNKKGIGKATVKKLIDYFGTFDAIESA 574 Query: 585 SPETLASIEGISKKIACKIYN 605 + E + + +KKI+ I N Sbjct: 575 TAEEIEKVT--NKKISHIIKN 593 >gi|154246286|ref|YP_001417244.1| excinuclease ABC, C subunit [Xanthobacter autotrophicus Py2] gi|154160371|gb|ABS67587.1| excinuclease ABC, C subunit [Xanthobacter autotrophicus Py2] Length = 779 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 222/502 (44%), Positives = 302/502 (60%), Gaps = 5/502 (0%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + + P PGVY+M+ VLYVGKA +++KR+ SY HT+RI MI+ ++ F Sbjct: 63 AVKHAPAGPGVYRMIAADSSVLYVGKAKSIRKRVLSYTRPVGHTNRIARMIAATASMEFV 122 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T TE EALLLEAN+IK+LKPRFN+LLRDDKSFPYILIT H P + KHR + G Y Sbjct: 123 STRTEPEALLLEANLIKQLKPRFNVLLRDDKSFPYILITADHVAPQITKHRGARNRPGDY 182 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GPFASV AV++TIN+L+R F LRSC+DS + +RTRPCLL QIKRC+GPCTGE+S Y Sbjct: 183 YGPFASVWAVDRTINALERAFLLRSCSDSYYENRTRPCLLHQIKRCAGPCTGEVSHTDYA 242 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 E V EA+ FLSG + +KE++A M A+ + ++E A RDRLAALS +Q Sbjct: 243 ELVREARAFLSGRSRAVKEELALEMEAASQELEFERAARLRDRLAALSAVQGSQGINPRG 302 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F+ + C++ FF GQN G ++ + D + A++L FL QFY DKP Sbjct: 303 VEEADVFACHQQGGATCVEVFFFRTGQNWGNRAYYPRADRSLSEAEVLGAFLAQFYEDKP 362 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 CP ILLS + EE +LL + ++ G++++I P++GEKR +++ AL NA + + L+ Sbjct: 363 CPRLILLSHKVEEQALLAEALSEKTGHRIEIAAPQRGEKRDLVDHALQNAREALARTLAE 422 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + +L+ F L P+RIE+YDNSHIMG +AVG M+V G GF K+QYRKFN+ Sbjct: 423 SATQTKLLEGVAATFGLKAPPQRIEVYDNSHIMGTNAVGGMIVAGPEGFRKSQYRKFNIK 482 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKN--EENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 D+ DD MMR VL RRFS+L+K + I + Q Sbjct: 483 SADIVPGDDFGMMREVLRRRFSRLLKEAPRDGAGEGGDVGGVQELDATGGDIGPASEAQS 542 Query: 477 SAAQGVLKKLNVENRITIISIA 498 + A +E I SIA Sbjct: 543 TQAPSPAVMPGLEPGIHAGSIA 564 Score = 216 bits (551), Expect = 7e-54, Method: Composition-based stats. Identities = 74/170 (43%), Positives = 102/170 (60%), Gaps = 2/170 (1%) Query: 445 NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRS 504 + + WPD+V++DGG GQL+AA+ VL +L + + + ++ IAKG R Sbjct: 611 DSDPEEVDALPDATEASPWPDLVLIDGGLGQLNAARTVLDELGITD-VPLVGIAKGLDRE 669 Query: 505 AGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP-LDEINGI 563 AG E+FF+ + RDP+LYFIQRLRDEAHRFAI +HR RRKK L I G+ Sbjct: 670 AGREQFFLPGRTPFRMEPRDPVLYFIQRLRDEAHRFAIGSHRARRKKDITEAGLQAIAGV 729 Query: 564 GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 GP RKR LL+ FGT+K I R+S L + GI+ A +Y++FH+ Sbjct: 730 GPTRKRALLRHFGTLKAIERASLADLEQVAGINAATAKAVYDYFHERPPG 779 >gi|284931470|gb|ADC31408.1| UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C) [Mycoplasma gallisepticum str. F] Length = 670 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 161/614 (26%), Positives = 281/614 (45%), Gaps = 34/614 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + P+ PG Y + ++Y+GKA N+ KR+ Y + + + ++++I ++ F Sbjct: 86 KLDLAPKKPGCYLWKNHLNEIIYIGKAKNIYKRVHQYFNGP-KDLKTSKLVNEIFDVEFI 144 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 E EALLLEAN+IK+ KPR+NILL+D+ +PYILIT K K P L R+ +G + Sbjct: 145 EVNNENEALLLEANLIKKHKPRYNILLKDNNGYPYILIT-KEKYPRLIYTRNFDPKKGKH 203 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GPFAS + K + L + F + R C + + C CT E+S Y Sbjct: 204 YGPFASSEM--KAYDLYNLLLKLFPLK-NCFNKKGRKCEFYDLNLCMKACTHEVSEADYE 260 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + F G + + + A+ K D+E A + D A++ I + Sbjct: 261 VMKKKIDYFFHNGADQVLKGLKEKELIASEKFDFEQAKKYLDLQKAINLIFDKQIINLYS 320 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 R+D + +N+ CI + Q T E ++++ +L Q+Y D Sbjct: 321 AKERIDVLAYQIKENVICIVLFSYVSSQLVSKNTICDFYYGEE--QEVITSYLSQYYKDN 378 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P+ + S + +LL+ S + + + + + + + Sbjct: 379 IKPKILYASLDQANATLLKDSLGIEIINPTSGKMNEIMSLAL--QNVTNELSQKYDSLVK 436 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 E + L K + + +E+YDNS++ + M+V N F K +YRK+ + Sbjct: 437 KEQRINLALDQLKKLIKVDKLNH-LEVYDNSNLFNTDKISAMIVFENNQFNKKKYRKYKI 495 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 D M V+ RR Q +KN +F PD++ILDGGK Q+ Sbjct: 496 KDQQALG--DYHYMYEVIYRRLYQALKN-------------NFVDLPDLIILDGGKHQVL 540 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 AA+ + L ++ RI +I +AK K +K + + L+ + +F+ L++E Sbjct: 541 AAKKAIVDLQIDQRINLIGLAKNNKHQT--DKIVTSNLDEISLDKSSVLYFFLANLQEEV 598 Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 H+FAI+ RK + K+ Y S LD+I G+G RK+ L++ F T+ I ++S +L+ + + Sbjct: 599 HKFAISFFRKTKAKSLYDSILDQIKGLGKKRKQQLIEHFKTIDEIKKASIASLSQV--LP 656 Query: 597 KKIACKIYNHFHKN 610 +IA K+ ++ Sbjct: 657 IEIAKKLKQKLDQS 670 >gi|294660391|ref|NP_853137.3| excinuclease ABC subunit C [Mycoplasma gallisepticum str. R(low)] gi|284812049|gb|AAP56705.2| UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C) [Mycoplasma gallisepticum str. R(low)] gi|284930618|gb|ADC30557.1| UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C) [Mycoplasma gallisepticum str. R(high)] Length = 670 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 160/614 (26%), Positives = 281/614 (45%), Gaps = 34/614 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + P+ PG Y + ++Y+GKA N+ KR+ Y + + + ++++I + F Sbjct: 86 KLDLAPKKPGCYLWKNHLNEIIYIGKAKNIYKRVHQYFNGP-KDLKTSKLVNEIFYVEFI 144 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 E EALLLEAN+IK+ KPR+NILL+D+ +PYIL+T K K P L R+ +G + Sbjct: 145 EVNNENEALLLEANLIKKHKPRYNILLKDNNGYPYILMT-KEKYPRLIYTRNFDPKKGKH 203 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GPFAS + K + L + F + R C + + C CT E+S Y Sbjct: 204 YGPFASSEM--KAYDLYNLLLKLFPLK-NCFNKKGRKCEFYDLNLCMKACTHEVSEADYE 260 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + F G + + + + A+ K D+E A + D A++ I + Sbjct: 261 VMKKKIDYFFHNGADQVLKDLKEKESIASEKFDFEQAKKYLDLQKAINLIFDKQIINLYS 320 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 R+D + +N+ CI + Q T E ++++ +L Q+Y D Sbjct: 321 AKERIDVLAYQIKENVICIVLFSYVSSQLVSKNTICDFYYGEE--QEVITSYLSQYYKDN 378 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P+ + S + +LL+ S + + + + + + + Sbjct: 379 IKPKILYASLDQANATLLKDSLGIEIINPTSGKMNEIMSLAL--QNVTNELSQKYDSLVK 436 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 E + L K + + +E+YDNS++ V M+V N F K +YRK+ + Sbjct: 437 KEQRINLALDQLKKLIKVDKLNH-LEVYDNSNLFNTDKVSAMIVFENNQFNKKKYRKYKI 495 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 D M V+ RR Q +KN +F PD++ILDGGK Q+ Sbjct: 496 KDQQALG--DYHYMYEVIYRRLYQALKN-------------NFVDLPDLIILDGGKHQVL 540 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 AA+ + L ++ +I +I +AK K +K + + L+ + +F+ L++E Sbjct: 541 AAKKAIVDLQIDKKINLIGLAKNNKHQT--DKIVTFDLDEISLDKSSALYFFLANLQEEV 598 Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 H+FAI+ RK + K+ Y S LD+I G+G RK+ L++ F T+ I ++S +L+ + + Sbjct: 599 HKFAISFFRKTKAKSLYDSILDQIKGLGKKRKQQLIEHFKTIDEIKKASIASLSQV--LP 656 Query: 597 KKIACKIYNHFHKN 610 +IA K+ ++ Sbjct: 657 IEIAKKLKQKLDQS 670 >gi|219685233|ref|ZP_03540053.1| excinuclease ABC subunit C [Borrelia garinii Far04] gi|219673329|gb|EED30348.1| excinuclease ABC subunit C [Borrelia garinii Far04] Length = 603 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 166/605 (27%), Positives = 285/605 (47%), Gaps = 32/605 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P G Y+ML+ ++LY+GKA NL+ RIKSY +H+I ++ + +I T Sbjct: 14 KLPTTSGCYKMLNENKKILYIGKAKNLRSRIKSYFLEK-KSHKIKILMKNVKSIEVITTN 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK KP +N+ L+D K +P + IT K P ++K R Q YFGP Sbjct: 73 SEYEALLLECNLIKTHKPDYNVKLKDGKGYPMVRIT-HEKYPRIFKTRKIINDQSEYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F +V +++ ++ + +TF +R C + PCL + + +C G C E ++Y V Sbjct: 132 FTNVKKLDQVLDFINKTFKIRKCK----KKSNAPCLYYHMGQCLGVCYKENLEKEYQIEV 187 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 ++AK LSG + +I + A KED+E+AI ++ ++L I Sbjct: 188 NKAKSILSGNISEILGQIDIKLKLAVQKEDFETAIKLKEMKSSLIEINRIQIVTKANNLN 247 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D ++ N+ I + G+ F ++ + + + P+ Sbjct: 248 IDYVYVHPGDNVNTIIVLKYRDGKLVERDANFDESICKKDELLLQFLIQYYTSINMIVPD 307 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 I + + +T +E + K +I + E KI+E A+ NA S + E Sbjct: 308 KIHIFLKDVDTKNVEKLINEIKNTKTEIIYKETKEILKIMEMAISNAELSLREY---ENK 364 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 L+ + +PK IE +D +H+ G V MV K Y+ + ++ Sbjct: 365 SNKTLESLKLLLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGIPFKENYKLYKINSLL 424 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 DD ++ V+ RR+S++I + P+++++DGGKGQLSAA Sbjct: 425 KGEIDDFKAIKEVILRRYSEIINKK--------------LELPNLILIDGGKGQLSAAFS 470 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 +LK L +E+++ + S+AK + F + + + L P L +Q +RDEAHR A Sbjct: 471 ILKSLKIEDKVKVCSLAKKHET-----IFLINNKKGINLPQGHPALRILQNVRDEAHRKA 525 Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 ++KRR+K +I+G+G + +L+ GT K I S ++ I+ K+A Sbjct: 526 NGFNKKRREKITL-LYTKIDGVGEKTAQKILKLIGTYKDILPLSENEISEKIKINIKLAK 584 Query: 602 KIYNH 606 +I Sbjct: 585 RIKEF 589 >gi|307298657|ref|ZP_07578460.1| excinuclease ABC, C subunit [Thermotogales bacterium mesG1.Ag.4.2] gi|306915822|gb|EFN46206.1| excinuclease ABC, C subunit [Thermotogales bacterium mesG1.Ag.4.2] Length = 575 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 164/601 (27%), Positives = 281/601 (46%), Gaps = 49/601 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN--NHTHRITHMISQINNIR 59 + Q+PE PGVY + V+YVGKA L++R+ SY + + + + + ++ Sbjct: 8 KASQLPEEPGVYIFKNEKDDVVYVGKAKKLKRRVLSYFRESTWSKNEKARCIAEEAEDLD 67 Query: 60 FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG 119 F + +E EALLLEAN+I KP+FN+LLRD +++PYI I+ + P L R ++G Sbjct: 68 FIMVTSEREALLLEANLIFNKKPKFNVLLRDSRTYPYIYIS-ADQYPYLAITRT-KELEG 125 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 SYFGP+ S V K + LQ+ F +R+C + R + +PC L+ +K CS PC ++S E+ Sbjct: 126 SYFGPYTSAGLVRKLLEFLQKVFKIRTCTYELSRVK-KPCFLYHLKMCSAPCVEKVSPEE 184 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y E + +FL G ++E + + M + +E A RD L+ + + Sbjct: 185 YREQLSALIEFLEGDTLKVREALLKRMAVLSEALQFERAAEIRDILSTMDDLYAFQGVEA 244 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 +D + + G G F E T ++ F Sbjct: 245 -PLDLKADVLAVSAGLAALLQVRGGMLLGKLIFDFP---EGTPIDFITQFYYAK--GNRM 298 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P+ ++++ L + + I P+ ++ +++ A N +L Sbjct: 299 PKALIVTG------LKKKDIKQFKRDFPYIGEPRDEQEERLLSIAFKNIDEEMKIRL--- 349 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + LK + L P RIE D SH G V +VV K++YR++ + Sbjct: 350 -NATHSLKQAQQILGLKRFPSRIEGIDISHTQGLYTVASVVVFDNGKPNKSEYRRYRI-- 406 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 ++++ +D M V++RR+++ PD++++DGG+ QL A Sbjct: 407 SELEEPNDFEAMATVVKRRYTK-------------------HPLPDLLLIDGGEPQLRAV 447 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 + ++ ++ I+ +AK E F+ + + L P+L I + DEAHR Sbjct: 448 EKAFAEIGIQEY-EIVGLAK-----EFNELVFLDNRDRVKLKEEHPVLRMIISIDDEAHR 501 Query: 540 FAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAI HR R++ S +D+I GIGP RK+ L+++FG+VK I+ +S L S+ SK Sbjct: 502 FAINYHRVLRERRFQSSKIDDIPGIGPKRKKALMRAFGSVKGIAEASEADLYSVLRNSKA 561 Query: 599 I 599 + Sbjct: 562 V 562 >gi|157165055|ref|YP_001466435.1| excinuclease ABC subunit C [Campylobacter concisus 13826] gi|112801609|gb|EAT98953.1| excinuclease ABC, C subunit [Campylobacter concisus 13826] Length = 605 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 188/624 (30%), Positives = 292/624 (46%), Gaps = 58/624 (9%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQINN 57 +P PGVYQ D R+LYVGKA L+ R+KSY + + RI+ MIS+ + Sbjct: 8 TLPNEPGVYQYFDAQNRLLYVGKAKILKNRVKSYFKFTPSLAPAEKLSPRISKMISEAVH 67 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117 + + VT +E +AL+LE + IK+LKP++NILLRDDK++PYI I + P R Sbjct: 68 LEYIVTPSEADALILENSFIKQLKPKYNILLRDDKTYPYIFINLNDEFPRFEITRKVVKG 127 Query: 118 QG-SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176 YFGP+ S + + +L F L + + CL +Q+KRC PC G+IS Sbjct: 128 SNIRYFGPYFSGAG--ELLEALYLNFNLVQKKSCI--KGKKACLFYQLKRCYAPCEGKIS 183 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 E Y + V +A L N + + M EDYE A RD++ L ++Q + Sbjct: 184 KESYAKIVADATAALQNPNLLIAR-LEELMLNYAKAEDYEQAAATRDKMQTLKNMQTKVE 242 Query: 237 SI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS---ESTNAQILSYFL 290 + +S+ ++ C G+ G T + + + N L Sbjct: 243 VDLAKLEDFEAYSVACVHDMICAVRFSVQSGKITGVKTDITQAKNAQKDEINEAYKQAIL 302 Query: 291 RQFYTDKPCPE-NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH 349 + F +P I ++E E++ L+E +++G K IT PK G+KRKI E A NA Sbjct: 303 KSFIAGQPIISTKIYVNENFEDSELVEEILNERFGRKFSITCPKIGDKRKICEIATKNAE 362 Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 S + L + +L + + F L H P +E YDNSH+ G ++VG MV + K Sbjct: 363 VSIEKYL--KTHDNELLNEIKEYFGLAHTPYVVEAYDNSHLFGEASVGAMVRYEHGEWAK 420 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 YR +L +D MR L R + K S PD+ ++ Sbjct: 421 QNYRHMHLGSK-----NDYDQMRESLTARALRFDK----------------LSPPDLWVI 459 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAK-----GPKRSAG--MEKFFVKKGEALVLNM 522 DGG+ L+ A +L + +I+I+K R+ G +K + K G + L+ Sbjct: 460 DGGEALLNLACEILASSG--ANVDVIAISKEKIDAKAHRAKGEAKDKIYTKNG-SFSLST 516 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKK--AAYSPLDEINGIGPLRKRLLLQSFGTVKM 580 D L F Q++RDE+HRF I+ HRK R+K S L + G+ L+ +G+ Sbjct: 517 SDKKLQFFQKMRDESHRFVISFHRKTRQKNDMQRSVLRQ-AGVSEGSIAKLISFYGSFDK 575 Query: 581 ISRSSPETLASIEGISKKIACKIY 604 IS ++ + +A I +K +A K+ Sbjct: 576 ISEANLDEVAKIT--NKSVAAKLL 597 >gi|225552304|ref|ZP_03773244.1| excinuclease ABC, C subunit [Borrelia sp. SV1] gi|225371302|gb|EEH00732.1| excinuclease ABC, C subunit [Borrelia sp. SV1] Length = 603 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 165/605 (27%), Positives = 285/605 (47%), Gaps = 32/605 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P G Y+ML+ ++LY+GKA NL+ R+KSY N + +I ++ + +I T Sbjct: 14 KLPTTSGCYKMLNENKKILYIGKAKNLRSRVKSYFLEKN-SLKIKILMKNVKSIEVITTN 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK KP +N+ L+D K +P + IT K P ++K R + YFGP Sbjct: 73 SEYEALLLECNLIKTHKPDYNVKLKDGKGYPMVRIT-HEKYPRIFKTRKIINDKSEYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F +V +++ ++ + +TF +R C + PCL + + +C G C E ++Y + + Sbjct: 132 FTNVKKLDQVLDFINKTFKIRKCK----KKSNAPCLYYHMGQCLGVCHKENLEKEYQKEL 187 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 +AK L+G + +I + A KED+E+AI ++ +L I Sbjct: 188 DKAKSILNGNISEILSQIDIKLKLAIQKEDFETAIKLKEIKNSLIEINQIQIVTKTNNLN 247 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D ++ +N+ I + G+ F ++ + + + P+ Sbjct: 248 IDYVHVHPGENVNTIIVLKYRNGKLVERDANFDESICKENELILQFLTQYYTSINMIVPD 307 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 I + + +T +E + K +I + E KI+E A+ NA S + E Sbjct: 308 KIHIFLKDIDTKNVEKLINEIKNTKTEIIYKETEEILKIMEMAISNAELSLREY---ENK 364 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 L+ + +PK IE +D +H+ G V MV K YR + L+ Sbjct: 365 SNKALESLKILLEMNKLPKIIEGFDIAHLKGQETVASMVTFKMGIPFKKNYRLYKLNSLL 424 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 DD ++ V+ RR+S++I N L P+++++DGGKGQL+AA Sbjct: 425 KGEIDDFKAIKEVISRRYSEIINNNLEL--------------PNLILIDGGKGQLNAAIS 470 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 +LK L +EN++ + S+AK + F + + L P L +Q +RDEAHR A Sbjct: 471 ILKGLKIENKVKVCSLAKKQET-----IFLTTNKKGINLPHGHPALRILQNVRDEAHRKA 525 Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 ++K R+K +I+GIG + +L+S GT K I S ++ ++ ++A Sbjct: 526 NGFNKKSREKITL-LYTKIHGIGEKTAQKILKSIGTYKDIFPLSENEISEKIKVNVQLAK 584 Query: 602 KIYNH 606 +I Sbjct: 585 RIKEF 589 >gi|118474808|ref|YP_892422.1| excinuclease ABC subunit C [Campylobacter fetus subsp. fetus 82-40] gi|118414034|gb|ABK82454.1| excinuclease ABC, C subunit [Campylobacter fetus subsp. fetus 82-40] Length = 602 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 177/628 (28%), Positives = 276/628 (43%), Gaps = 58/628 (9%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54 + +P PGVYQ D ++LYVGKA L+ R+KSY S+ + RI MI++ Sbjct: 5 ELKTLPNEPGVYQYFDKNSKLLYVGKAKVLKNRVKSYFSFTGTLSPSSRLSPRIAKMINE 64 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114 +I + T +E +AL+LE + IK+LKP++NILLRDDK++PYI + P R Sbjct: 65 AVHIEWITTSSESDALILENSFIKQLKPKYNILLRDDKTYPYIYVDLSSNFPRFEITRKV 124 Query: 115 STIQG-SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 + YFGPF ++ + +L F L + CL QI RC PC G Sbjct: 125 IKGKNIKYFGPF--FKGAKEILEALYLEFKLVQKK--SCLKDKKACLFHQINRCHAPCIG 180 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 I E+Y + V A K L + E ++ M +E+YE A RD++ + I Sbjct: 181 AIKKEEYAKIVSSAIKKLKNPELLV-ENLSNLMQNFAERENYEEAAKLRDQINTIKDISI 239 Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNA---QILS 287 + ++ K C G+ Sbjct: 240 KVQIDIAKLEDFEAIAISCAKGFVCSVRFSIRDGKVSFANHSLTPAKDTINLDLSGIYKQ 299 Query: 288 YFLRQFYTDKPCPENILLSE-EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 L F D P + + E E+ L+ K++ K I PK G+K+ ++E AL Sbjct: 300 VILEAFPDDLPINTTKIYTYSEFEDMELVSQILSKRHSKKFHIISPKAGDKKSLLEVALK 359 Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 N + L + L + + F L ++P +IE +DNSH+ G + VG M+ + Sbjct: 360 NCDIFIEKHL--KAHSYEFLNEIKEYFKLTNLPIKIECFDNSHLFGTAPVGGMISWELDK 417 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 F K YR +L+ +D M +L R + K + PD+ Sbjct: 418 FKKEHYRHIHLNST-----NDYDQMNEMLTNRALRFDK----------------LNPPDL 456 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAK-----GPKRSAG--MEKFFVKKGEALV 519 +LDGG L A+ +++ + II+I+K R+ G +K + + G+ L Sbjct: 457 WVLDGGDALLKLAKNIVQSSG--ANVDIIAISKEKIDAKAHRAKGNANDKIYTEFGK-LS 513 Query: 520 LNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA--AYSPLDEINGIGPLRKRLLLQSFGT 577 L+ D L F QRLRDEAHRFAI+ H+ RKK S L + G+ + LL FG+ Sbjct: 514 LSSNDKKLQFFQRLRDEAHRFAISFHQNSRKKQDLQSSELMNL-GVSDGSIKKLLSYFGS 572 Query: 578 VKMISRSSPETLASIEGISKKIACKIYN 605 + I ++S + + + +K +A KI Sbjct: 573 FENIHKASWDDIKKVT--NKTVANKILA 598 >gi|119367630|sp|Q0SN50|UVRC_BORAP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C Length = 598 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 167/605 (27%), Positives = 285/605 (47%), Gaps = 32/605 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P G Y+ML+ ++LY+GKA NL+ RIKSY +H+I ++ + +I T Sbjct: 14 KLPTTSGCYKMLNENKKILYIGKAKNLRSRIKSYFLEK-KSHKIKILMKNVKSIEVITTN 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK KP +N+ L+D K +P + IT K P ++K R Q YFGP Sbjct: 73 SEYEALLLECNLIKTHKPDYNVKLKDGKGYPMVRIT-HEKYPRIFKTRKIINDQSEYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F +V +++ ++ + +TF +R C + PCL + + +C G C E ++Y E + Sbjct: 132 FTNVKKLDQVLDFINKTFKIRKCK----KKSNTPCLYYHMGQCLGVCFKENLEKEYQEEL 187 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 +AK L+G + +I + A KED+E+AI ++ ++L I Sbjct: 188 DKAKSILNGNISEILSQIDIKLKLAVQKEDFENAIKLKEIKSSLIEINQIQIVTKTNNLN 247 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D ++ +N+ I + G+ F ++ + + + P+ Sbjct: 248 TDYVYVHPGENVNTIIVLKYRNGKLVERDANFDESICKKNELILQFLIQYYTSINMIVPD 307 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 I + + +T E + K +I + E KI+E A+ NA S + E Sbjct: 308 KIHIFLKDIDTKNAEKLINEIKNTKTEIIYKETEEILKIMEMAISNAELSLREY---ENK 364 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 + L+ + +PK IE +D +H+ G V MV K Y+ + L+ Sbjct: 365 NNKALESLKIFLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGIPFKENYKLYKLNSLL 424 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 DD ++ V+ RR+S++I P+++++DGGKGQL+AA Sbjct: 425 KGEIDDVKAIKEVILRRYSEIIN--------------KNLELPNLILIDGGKGQLNAAFS 470 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 +LK L +EN++ + S+AK + F + + L P L +Q +RDEAHR A Sbjct: 471 ILKGLKIENKVKVCSLAKKHET-----IFLTTNKKGINLPQGHPALRILQNVRDEAHRKA 525 Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 ++KRR+K +INGIG + +L+S GT K I S ++ ++ ++A Sbjct: 526 NGFNKKRREKITL-LYTKINGIGEKTAQKILKSIGTYKDILPLSENEISEKIKVNIRLAK 584 Query: 602 KIYNH 606 +I Sbjct: 585 RIKEF 589 >gi|15791172|ref|NP_280996.1| excinuclease ABC subunit C [Halobacterium sp. NRC-1] gi|169236928|ref|YP_001690128.1| excinuclease ABC subunit C [Halobacterium salinarum R1] gi|73920383|sp|Q9HMU5|UVRC_HALSA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|229558033|sp|B0R7R3|UVRC_HALS3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|10581790|gb|AAG20476.1| excision nuclease chain C [Halobacterium sp. NRC-1] gi|167727994|emb|CAP14782.1| excinuclease ABC subunit C [Halobacterium salinarum R1] Length = 590 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 179/621 (28%), Positives = 279/621 (44%), Gaps = 56/621 (9%) Query: 3 SEQMPECPGVYQM--LDIAG-----RVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQI 55 + ++P PGVYQ D G RVLYVGKA +++ R++SY + + RI M+++ Sbjct: 10 ASELPAEPGVYQFVARDPDGTADGERVLYVGKAVDIRDRVRSY--GDPRSERIAGMVARA 67 Query: 56 NNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS 115 +++ VT TE +ALLLEAN++KR +PR+N+ L+DDKS+P + +T + P + RD Sbjct: 68 DDVTVAVTDTETQALLLEANLVKRHQPRYNVRLKDDKSYPLVQVTSHREAPRIEVTRDP- 126 Query: 116 TIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEI 175 + FGP+ VE + +++ + LR C++ +R R RPCL +++ C+ PCTG I Sbjct: 127 DPGAAAFGPYTDKGDVETVVKAVRSVYGLRGCSEHKYRDRERPCLDYEMGLCAAPCTGAI 186 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN-- 233 S +Y E V A +F G L + + R M A E +E A RDRLA + Sbjct: 187 SEREYREAVESATRFFEGETGALADPLRREMAAAAQAEAFERAANLRDRLAVVEGFHEGG 246 Query: 234 ------HNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQIL- 286 + D + + A + GQ L+ + Sbjct: 247 GAAVAAGDADAGASTDVLGVAVEGDAATVARLHAEGGQLVERDQHRLEAPQGEDRVAAVL 306 Query: 287 SYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 + FL Q+Y ++ PE ILL E + + V + VP G + +++E AL Sbjct: 307 AAFLVQYYAERDLPERILLPEPHGDDEVAAW----LDAADVAVGVPGAGREARLVELALK 362 Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 NAHR L + P+RIE D SH G VG V + Sbjct: 363 NAHR--------RAGGGDELGALADALGV-RRPERIEGVDVSHAQGREVVGSNVCFVDGS 413 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 YR+ L DD A MR ++ R + + ++ V Sbjct: 414 AETADYRRKKLDEE----NDDYANMRRLVGWRAERAVDGRDDRPDPD------------V 457 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526 +++DGG+GQL AA ++ + +I++AK E+ V P Sbjct: 458 LLVDGGRGQLDAALDAVEAAGWDGPDAVIALAKD-------EEVVVTPDRTYDWGSDAPQ 510 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586 L+ +QR+RDEAHRFA+ HR R LD I G+GP + LL FG+V + ++S Sbjct: 511 LHVLQRVRDEAHRFAVAYHRTLRDDVTT-ALDGITGVGPELRARLLGRFGSVAGVRQASV 569 Query: 587 ETLASIEGISKKIACKIYNHF 607 + L + G+ + A I Sbjct: 570 KDLRDVAGVGEATAETIAKRL 590 >gi|119367632|sp|Q661G2|UVRC_BORGA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C Length = 603 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 165/605 (27%), Positives = 284/605 (46%), Gaps = 32/605 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P G Y+ML+ ++LY+GKA NL+ RIKSY +H+I ++ + +I T Sbjct: 14 KLPTTSGCYKMLNENKKILYIGKAKNLRSRIKSYFLEK-KSHKIKILMKNVKSIEVITTN 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK KP +N+ L+D K +P I IT K P + K R Q YFGP Sbjct: 73 SEYEALLLECNLIKTHKPDYNVKLKDGKGYPMIRIT-HEKYPRILKTRKIINDQSEYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F +V +++ ++ + +TF +R C + PCL + + +C G C E ++Y V Sbjct: 132 FTNVKKLDQVLDFINKTFKIRKCK----KKSNAPCLYYHMGQCLGVCYKENLEKEYQIEV 187 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 ++AK L+G + +I + A KED+E+AI ++ ++L I Sbjct: 188 NKAKSILNGNISEILSQIDIKLKLAVQKEDFETAIKLKEMKSSLIEINQIQIVTKANNLN 247 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D ++ +N+ I + G+ F ++ + + + P+ Sbjct: 248 IDYVYVHPGENVNTIIVLKYRDGKLVERDANFDESICKKDELVLQFLIQYYTSINMIVPD 307 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 I + + +T +E + K +I + E KI+E A+ NA S + E Sbjct: 308 KIHIFLKDVDTKNVEKLINEIKNTKTEIIYKETKEILKIMEMAISNAKLSLREY---ENK 364 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 L+ + +PK IE +D +H+ G V MV K Y+ + L+ Sbjct: 365 SNKALESLKIFLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGIPFKENYKLYKLNSLL 424 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 DD ++ + RR+S++I + P+++++DGGKGQLSAA Sbjct: 425 KGEIDDFRAIKEAILRRYSEIINKK--------------LELPNLILIDGGKGQLSAAFS 470 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 +LK L +E+++ + S+AK + F + + + L P L +Q +RDEAHR A Sbjct: 471 ILKSLKIEDKVKVCSLAKKHET-----IFLITNKKGINLPQGHPALRILQNVRDEAHRKA 525 Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 ++KRR+K +I+G+G + +L+ GT K I S ++ ++ K+A Sbjct: 526 NGFNKKRREKITL-LYKKIDGVGEKTAQKILKLIGTYKDILPLSENEISEKIKVNIKLAK 584 Query: 602 KIYNH 606 +I Sbjct: 585 RIKEF 589 >gi|224532005|ref|ZP_03672637.1| excinuclease ABC subunit C [Borrelia valaisiana VS116] gi|224511470|gb|EEF81876.1| excinuclease ABC subunit C [Borrelia valaisiana VS116] Length = 598 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 168/605 (27%), Positives = 286/605 (47%), Gaps = 32/605 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P G Y+ML+ ++LY+GKA NL+ RIKSY N +H+I ++ + +I T Sbjct: 14 QLPTTSGCYKMLNENKKILYIGKAKNLRSRIKSYFLEKN-SHKIKILMKNVKSIEVITTN 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK KP +N+ L+D K +P + IT K P ++K R Q YFGP Sbjct: 73 SEYEALLLECNLIKTHKPDYNVKLKDGKGYPMVRIT-HEKYPRIFKTRKIINDQSEYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F +V +++ ++ + +TF +R C + PCL + + +C G C E ++Y + + Sbjct: 132 FTNVKKLDQVLDFINKTFKIRKCK----KKSNVPCLYYHMGQCLGVCYKENLEKEYQKEL 187 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 +AK LSG + +I + A KED+E+AI R+ ++L I Sbjct: 188 DKAKSILSGNTSEILSQIDIKLKLAIQKEDFETAIKLRETKSSLIEINQVQIVTKTNNLN 247 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D ++ +N+ I + G+ F ++ + + + P+ Sbjct: 248 IDYVHVHPGENINTIIVLKYRNGKLVERDANFDESICKQNELILQFLTQYYTSINMVVPD 307 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 I + + +T +E + K +I + E KI+E A+ NA S + E Sbjct: 308 KIHIFLKDIDTKNVEKLINEIKNTKTEIIYKETEEILKIMEMAISNAELSLREY---ENK 364 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 L+ + +PK IE +D +H+ G V MV K Y+ + L+ Sbjct: 365 SNKALESLKIFLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGIPFKENYKLYKLNSLL 424 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 DD ++ V+ RR+S++I P+++++DGGKGQL+AA Sbjct: 425 KGEIDDFKAIKEVISRRYSEIIN--------------KNLELPNLILIDGGKGQLNAAFS 470 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 +LK L +EN++ + S+AK + F + + + L P L +Q +RDEAHR A Sbjct: 471 ILKGLKIENKVKVCSLAKKHET-----IFLITNKKGINLPQGHPALRILQNVRDEAHRKA 525 Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 ++KRR+ +I+GIG + +L+S GT K I S ++ ++ ++A Sbjct: 526 NGFNKKRRENITL-LYTKIHGIGEKTAQKILKSIGTYKDILPLSENEISEKIKVNIQLAK 584 Query: 602 KIYNH 606 +I Sbjct: 585 RIKEF 589 >gi|305431707|ref|ZP_07400876.1| excision endonuclease subunit UvrC [Campylobacter coli JV20] gi|304445302|gb|EFM37946.1| excision endonuclease subunit UvrC [Campylobacter coli JV20] Length = 604 Score = 372 bits (955), Expect = e-100, Method: Composition-based stats. Identities = 173/624 (27%), Positives = 288/624 (46%), Gaps = 53/624 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54 + +P GVYQ + G++LYVGKA NL+ R++SY + ++ RI MI + Sbjct: 13 ELQTLPANAGVYQYFNAEGKLLYVGKAKNLKNRVRSYFAFTPNLRANPKNSLRIQKMIEE 72 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD- 113 ++ F T +E +AL+LE + IK+L P++NILLRDDK++PYI + + P R Sbjct: 73 AVHLEFITTNSEADALILENSFIKQLHPKYNILLRDDKTYPYIYVDFNEEFPRFEITRKL 132 Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 + YFGPF + +++L + L+ A PC+ +QI RC PC Sbjct: 133 VKKSKIKYFGPF--FKGARELLDALYLYYPLKQKASC-----KSPCIFYQISRCLAPCDK 185 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 +I+ E+Y + +A L + + + + + M E+YE A RD++A + ++ Sbjct: 186 KITQEEYRLILDKAINALLSPSILV-KNLEKQMFHLAQNENYEEAAKIRDQIATIRDLEI 244 Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNR--GTCTFFLKTDSESTNAQILSY 288 + + F+L ++ G+ + LK +++ +I Sbjct: 245 KVEIDIAKLEDFEIFALACESSMLSTLRFVVQNGKIISANSKITPLKNNTDFDKNEIYKQ 304 Query: 289 FLRQFYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 + + ++ + + E+ E+ LLE +++ K+ I VPK GEKR+I + A Sbjct: 305 LILENFSVDIPLVANTVYVYEDFEDRELLEEILSQRFDKKISIKVPKIGEKRRICDLAFQ 364 Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 NA + + S I K+ F L ++P IE++DNSH+ G + VG M+ Sbjct: 365 NACLNIQ--KEQKNSDFNIQKELKNYFELENLPNCIEVFDNSHLQGVANVGAMITYKMGT 422 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 + K+ YRKF+L +D MR VL R + E+ PD+ Sbjct: 423 WDKSNYRKFHLKYK-----NDYEQMREVLTR----------------RALEFDKMPAPDL 461 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNM 522 ++DGGK L A+ ++ I IS AK + G + L++ Sbjct: 462 WLIDGGKALLDLAKEIILSSGANVDILAISKEKINAKAHRAKGGAKDKIHSLKGEFALSI 521 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEIN-GIGPLRKRLLLQSFGTVKMI 581 D L F+Q+LRDEAHRFAI+ H+ +KK S + G+ + LL +G+ + I Sbjct: 522 NDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLSSSKLVKSGLSAGVIQKLLAYYGSFEAI 581 Query: 582 SRSSPETLASIEGISKKIACKIYN 605 ++ E L + G KK A KI Sbjct: 582 YEANFEELCQLVG--KKSAQKIKE 603 >gi|216263387|ref|ZP_03435382.1| excinuclease ABC, C subunit [Borrelia afzelii ACA-1] gi|215980231|gb|EEC21052.1| excinuclease ABC, C subunit [Borrelia afzelii ACA-1] Length = 603 Score = 372 bits (955), Expect = e-100, Method: Composition-based stats. Identities = 167/605 (27%), Positives = 285/605 (47%), Gaps = 32/605 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P G Y+ML+ ++LY+GKA NL+ RIKSY +H+I ++ + +I T Sbjct: 14 KLPTTSGCYKMLNENKKILYIGKAKNLRSRIKSYFLEK-KSHKIKILMKNVKSIEVITTN 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK KP +N+ L+D K +P + IT K P ++K R Q YFGP Sbjct: 73 SEYEALLLECNLIKTHKPDYNVKLKDGKGYPMVRIT-HEKYPRIFKTRKIINDQSEYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F +V +++ ++ + +TF +R C + PCL + + +C G C E ++Y E + Sbjct: 132 FTNVKKLDQVLDFINKTFKIRKCK----KKSNTPCLYYHMGQCLGVCFKENLEKEYQEEL 187 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 +AK L+G + +I + A KED+E+AI ++ ++L I Sbjct: 188 DKAKSILNGNISEILSQIDIKLKLAVQKEDFENAIKLKEIKSSLIEINQIQIVTKTNNLN 247 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D ++ +N+ I + G+ F ++ + + + P+ Sbjct: 248 TDYVYVHPGENVNTIIVLKYRNGKLVERDANFDESICKKNELILQFLIQYYTSINMIVPD 307 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 I + + +T E + K +I + E KI+E A+ NA S + E Sbjct: 308 KIHIFLKDIDTKNAEKLINEIKNTKTEIIYKETEEILKIMEMAISNAELSLREY---ENK 364 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 + L+ + +PK IE +D +H+ G V MV K Y+ + L+ Sbjct: 365 NNKALESLKIFLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGIPFKENYKLYKLNSLL 424 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 DD ++ V+ RR+S++I P+++++DGGKGQL+AA Sbjct: 425 KGEIDDVKAIKEVILRRYSEIIN--------------KNLELPNLILIDGGKGQLNAAFS 470 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 +LK L +EN++ + S+AK + F + + L P L +Q +RDEAHR A Sbjct: 471 ILKGLKIENKVKVCSLAKKHET-----IFLTTNKKGINLPQGHPALRILQNVRDEAHRKA 525 Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 ++KRR+K +INGIG + +L+S GT K I S ++ ++ ++A Sbjct: 526 NGFNKKRREKITL-LYTKINGIGEKTAQKILKSIGTYKDILPLSENEISEKIKVNIRLAK 584 Query: 602 KIYNH 606 +I Sbjct: 585 RIKEF 589 >gi|57168144|ref|ZP_00367283.1| excinuclease ABC, C subunit [Campylobacter coli RM2228] gi|57020518|gb|EAL57187.1| excinuclease ABC, C subunit [Campylobacter coli RM2228] Length = 604 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 173/624 (27%), Positives = 288/624 (46%), Gaps = 53/624 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54 + +P GVYQ + G++LYVGKA NL+ R++SY + ++ RI MI + Sbjct: 13 ELQTLPANAGVYQYFNAEGKLLYVGKAKNLKNRVRSYFAFAPNLRANPKNSLRIQKMIEE 72 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD- 113 ++ F T +E +AL+LE + IK+L P++NILLRDDK++PYI + + P R Sbjct: 73 AVHLEFITTNSEADALILENSFIKQLHPKYNILLRDDKTYPYIYVDFNEEFPRFEITRKL 132 Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 + YFGPF + +++L + L+ A PC+ +QI RC PC Sbjct: 133 VKKSKIKYFGPF--FKGARELLDALYLYYPLKQKASC-----KSPCIFYQISRCLAPCDK 185 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 +I+ E+Y + +A L + + + + + M E+YE A RD++A + ++ Sbjct: 186 KITQEEYRLILDKAINALLSPSILV-KNLEKQMFHLAQNENYEEAAKIRDQIATIRDLEI 244 Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNR--GTCTFFLKTDSESTNAQILSY 288 + + F+L ++ G+ + LK +++ +I Sbjct: 245 KVEIDIAKLEDFEIFALACESSMLSTLRFVVQNGKIISANSKITPLKNNTDFDKNEIYKQ 304 Query: 289 FLRQFYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 + + ++ + + E+ E+ LLE +++ K+ I VPK GEKR+I + A Sbjct: 305 LILENFSVDIPLVANTVYVYEDFEDRELLEEILSQRFDKKISIKVPKIGEKRRICDLAFQ 364 Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 NA + + S I K+ F L ++P IE++DNSH+ G + VG M+ Sbjct: 365 NACLNIQ--KEQKNSDFNIQKELKNYFELENLPNCIEVFDNSHLQGVANVGAMITYKMGT 422 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 + K+ YRKF+L +D MR VL R + E+ PD+ Sbjct: 423 WDKSNYRKFHLKYK-----NDYEQMREVLTR----------------RALEFDKMPAPDL 461 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNM 522 ++DGGK L A+ ++ I IS AK + G + L++ Sbjct: 462 WLIDGGKALLDLAKEIILSSGANVDILAISKEKINAKAHRAKGGAKDKIHSLKGEFALSI 521 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEIN-GIGPLRKRLLLQSFGTVKMI 581 D L F+Q+LRDEAHRFAI+ H+ +KK S + G+ + LL +G+ + I Sbjct: 522 NDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLSSSKLVKSGLSAGVIQKLLAYYGSFEAI 581 Query: 582 SRSSPETLASIEGISKKIACKIYN 605 ++ E L + G KK A KI Sbjct: 582 YEANFEELCQLVG--KKSAQKIKE 603 >gi|119953245|ref|YP_945454.1| excinuclease ABC subunit C [Borrelia turicatae 91E135] gi|254764925|sp|A1QZP2|UVRC_BORT9 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|119862016|gb|AAX17784.1| excinuclease ABC subunit C [Borrelia turicatae 91E135] Length = 602 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 161/608 (26%), Positives = 280/608 (46%), Gaps = 33/608 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 ++ P G Y+M ++LY+GKA NL+ R+K+Y + + ++ + NI Sbjct: 11 KVQEFPTTSGCYKMYSQDNKILYIGKAKNLRSRLKNYFLEKI-SLKTKILMRNVVNIEVI 69 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T +E EALLLE N+IK KP +NI L+DDK +P I IT K P ++K R Y Sbjct: 70 TTNSEYEALLLECNLIKEHKPDYNIKLKDDKGYPMIRITC-EKYPKVFKTRKIINDGSEY 128 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + ++ +N + +TF R C PCL F + +C G C E+Y Sbjct: 129 FGPYVNAKHLDLVLNLINKTFKTRKCKKKSKN----PCLYFHMGQCLGVCYRNDLEEQYK 184 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 E V++ + L+G L ++I M + +ED+ESAI ++ +L I Sbjct: 185 EEVNKIRHILNGNISKLLDEIEIKMKEVIKREDFESAIKLKETKRSLIEISQTQIITKIN 244 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D ++ NL I + G+ F ++ E + Sbjct: 245 KLSTDYIYIHKTDNLNVIVIFKYKDGKLVEKDINFDESIYEEEELIAEFITQYYTSLNMI 304 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P+ I + ++ E + + +I + + KI+E A+ NA + + Sbjct: 305 VPDKICIFKKIETEDIT-KLINELKSTNTEIVYEETKDAIKIMEMAISNAEIALKAYNNE 363 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + L++ + +PK IE +D +H+ G V +V K+ YR + ++ Sbjct: 364 KNK---ALENLKIILEMTKLPKTIEGFDIAHLNGYKTVASLVTFKMGKPFKDGYRVYKIN 420 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + +D ++ ++ RR+++LI + L P ++++DGGKGQL+A Sbjct: 421 SLNDGEINDFKAIKEIISRRYTKLINEQLEL--------------PTLILIDGGKGQLNA 466 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A +LK L +E+++TI ++AK + F K + + L +P L +Q +RDE+H Sbjct: 467 AYSILKGLKIEDKVTICALAKQEET-----IFLPNKTQGIKLPKGNPALKILQNVRDESH 521 Query: 539 RFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 R A + +RK RK + +I GIG + + +L++ GT K I + + +A I+ K Sbjct: 522 RKANSFNRKLRKNIKLNY-SKIEGIGEKKAKNILKTLGTYKDIFLLNEDEIAQKMKINIK 580 Query: 599 IACKIYNH 606 +A KI Sbjct: 581 MAKKIKKF 588 >gi|225850480|ref|YP_002730714.1| excinuclease ABC subunit C [Persephonella marina EX-H1] gi|225644935|gb|ACO03121.1| excinuclease ABC subunit C [Persephonella marina EX-H1] Length = 580 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 152/605 (25%), Positives = 276/605 (45%), Gaps = 45/605 (7%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 ++ P+ PGVY G +Y+GKA N++ R+K +++ + + + + I + +T Sbjct: 18 DEAPQSPGVYLFKGKKGEYIYIGKAKNIKNRLKGHLNQYRIDPKEKKIFDESSKIEWIIT 77 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 ++ EA +LE +IK+ KP++N+ L+ +P ++ITD P + R I+G YFG Sbjct: 78 KSDYEAFVLENELIKQYKPKYNVRLKSGSGYPMLVITDDE-YPTVVISRKFGEIEGEYFG 136 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PF + + + F LR+C R C + + CS PC +IS + Y Sbjct: 137 PFLPARTARAMKDLIHKLFRLRTC--DPLPKRDIVCFDYHLGLCSAPCVNKISKKDYNFD 194 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD 243 V AK FLSG ++ + + K ++E A + RD++ A+ ++ + + + ++ Sbjct: 195 VKAAKAFLSGDVKKFIYRLYDRLEEYKNKLNFEKASVVRDQILAMENLISKQEVLGLPVN 254 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303 +++ +R F++ E +S + PE + Sbjct: 255 EADIFYFSGK---DVYLIVVRGSRIVGKEFIQIKQEGIQDFEISVISNYYIRGNFIPEVV 311 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 + + + + L+ ++ G V++ E + I++ + + S Sbjct: 312 ISNRKFSDHKNLKRWLSEKKGSDVRLLFDIPDEIKGFIDRNIGSVDLSD----------- 360 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 LK+ K+ +P+RIE +D S + G VG VV K +YR+F + V Sbjct: 361 --LKEIFKRTFGFDLPERIEGFDISTLFGDFTVGSAVVWENGKMNKREYRRFKIKT--VD 416 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD A +R +L RRF + + + P +V++DGGKG L + V Sbjct: 417 GIDDYASLRELLFRRFRKYKEMDNP---------------PRLVLIDGGKGHLKQGEIVR 461 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 L + + I S+AK E + G+++ L P+L +RDEAHRFA++ Sbjct: 462 DALGI-KNLRIFSLAKKE------EILYTDDGKSVYLYNYQPLLKLFTTIRDEAHRFALS 514 Query: 544 THRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 +RK R++ LD+I G+G RK +L +++ TV I+++S E L + GI +K+A Sbjct: 515 YNRKLRERDTLKELLDKIEGVGKKRKEILYRTYKTVDRIAQASVEELKKL-GIPEKVAQN 573 Query: 603 IYNHF 607 I + Sbjct: 574 IKKYL 578 >gi|219684466|ref|ZP_03539410.1| excinuclease ABC subunit C [Borrelia garinii PBr] gi|219672455|gb|EED29508.1| excinuclease ABC subunit C [Borrelia garinii PBr] Length = 603 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 166/605 (27%), Positives = 286/605 (47%), Gaps = 32/605 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P G Y+ML+ ++LY+GKA NL+ RIKSY +H+I ++ + +I T Sbjct: 14 KLPTTSGCYKMLNENKKILYIGKAKNLRSRIKSYFLEK-KSHKIKILMKNVKSIEVITTN 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK KP +N+ L+D K +P + IT K P ++K R Q YFGP Sbjct: 73 SEYEALLLECNLIKTHKPDYNVKLKDGKGYPMVRIT-HEKYPRIFKTRKIINDQSEYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F +V +++ ++ + +TF +R C + PCL + + +C G C E ++Y V Sbjct: 132 FTNVKKLDQVLDFINKTFKIRKCK----KKSNAPCLYYHMGQCLGVCYKENLEKEYQIEV 187 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 ++AK LSG + ++I + A KED+E+AI ++ ++L I Sbjct: 188 NKAKSILSGNISEILDQINIKLKLAVQKEDFETAIKLKEMKSSLIEINRIQIVTKANNLN 247 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D ++ N+ I + G+ F ++ + + + P+ Sbjct: 248 IDYVYVHPGDNVNTIIVLKYRDGKLVERDANFDESICKKDELLLQFLIQYYTSINMIVPD 307 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 I + + +T +E + K +I + E +KI+E A+ NA S + E Sbjct: 308 KIHIFLKDVDTKNVEKLINEIKNTKTEIIYKETKEIKKIMEMAISNAELSLREY---ENK 364 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 L+ + +PK IE +D +H+ G V MV K YR + L+ Sbjct: 365 SNKALESLKLLLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGMPFKENYRLYKLNSLL 424 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 DD ++ V+ RR+S++I + P+++++DGGKGQLSAA Sbjct: 425 KGEIDDFKAIKEVILRRYSEIINKK--------------LELPNLILIDGGKGQLSAAFS 470 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 +LK L +E+++ + S+AK + F + + L P L +Q +RDEAHR A Sbjct: 471 ILKSLKIEDKVKVCSLAKKHET-----IFLTTNKKGINLTQGHPALRILQNVRDEAHRKA 525 Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 ++KRR++ +I+G+G + +L+ GT K I S ++ ++ K+A Sbjct: 526 NRFNKKRREQITL-LYTKIDGVGEKTAQKILKLIGTYKNILPLSENEISEKIKVNIKLAK 584 Query: 602 KIYNH 606 +I Sbjct: 585 RIKEF 589 >gi|150403662|ref|YP_001330956.1| excinuclease ABC subunit C [Methanococcus maripaludis C7] gi|150034692|gb|ABR66805.1| excinuclease ABC, C subunit [Methanococcus maripaludis C7] Length = 527 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 161/565 (28%), Positives = 270/565 (47%), Gaps = 53/565 (9%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 ++ +P+ PG Y D +G V+YVGKA NL+KR+ SY + NH + ++ I ++ F Sbjct: 2 INISDIPKNPGCYIYKDESGTVIYVGKAKNLKKRVSSYFNKKNHDPKTEQLVKSIYDMEF 61 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT E+EAL+LE+ +IK+ +P++NI L+D K++ YI I+ + P + R+ + +G Sbjct: 62 IVTDNEIEALILESTLIKKYRPKYNIDLKDSKNYAYIYIS-EEDFPRIGISRN-KSEKGK 119 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 ++GPF S + ++ L++TF +RSC + RPCL IK C+ PC+G+I+S+ Y Sbjct: 120 FYGPFTSAKERDYVLDVLKKTFKIRSCKNMH----KRPCLRHHIKNCTAPCSGDITSKDY 175 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + + +A+ L G +L ++ M+ + +E A++ R+ + A+ ++ + + Sbjct: 176 LNQIKKAEYVLKGNIDSLIHELKNEMDLKSKNLQFEEALVIREEINAVERLKTRQNVKRD 235 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D + + G F FL Q+Y + Sbjct: 236 VKYNEDVIGILEKSGKIHMMVFNVLKGTLFDRKYFEFDYTEN-----FFEEFLIQYYLEN 290 Query: 298 PCPENILLSEEAEETSLLEISF---------FKQYGYKVKITVPKQGEKRKIIEQALINA 348 P I++S + + ++ G KV +P++GEK+++++ A+ N Sbjct: 291 EVPSEIIISSLPKNLEEESKDYNSDALLDYLSQKKGSKVAFKIPQKGEKKQLLDLAIKNL 350 Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 ++ K L P+ IE +D SH+ G S V MV Sbjct: 351 EIYVNGNEIK-------VESLKNKLMLDKPPEIIECFDISHLSGTSTVASMVQFRNGKPD 403 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 K YR+F + V DD + V+ RR+S+LI+ L PD+++ Sbjct: 404 KKNYRRFKIKT--VSGIDDFKSISEVVFRRYSKLIEENLEL--------------PDLIV 447 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 +DGGKGQLS+A L+KL + +I IISIAK + E + L + + Sbjct: 448 IDGGKGQLSSAFSELRKLKL--KIPIISIAKREE-----EIYAPGIENPLPIKKNEKASL 500 Query: 529 FIQRLRDEAHRFAITTHRKRRKKAA 553 FIQ +RDEAHRFAI +R RKK Sbjct: 501 FIQEIRDEAHRFAINYNRLLRKKEL 525 >gi|21229392|ref|NP_635314.1| excinuclease ABC subunit C [Methanosarcina mazei Go1] gi|30173452|sp|Q8PRZ8|UVRC_METMA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|20907983|gb|AAM32986.1| Excinuclease ABC, subunit C [Methanosarcina mazei Go1] Length = 523 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 179/556 (32%), Positives = 271/556 (48%), Gaps = 46/556 (8%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + E +P PG Y D G VLYVGKA +L+KR+ SY +H + ++ + F Sbjct: 8 IDLEALPHLPGCYLFKDEEGIVLYVGKAKDLKKRVSSYFQKRDHDPKTASLMQFARGLDF 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT TEVEA LLE +IK+ PR+NI+L+D K + I +T K P + R +T +G Sbjct: 68 IVTNTEVEAFLLENTLIKKHWPRYNIMLKDSKRYACIHLT-GEKFPRIRIAR-KNTGEGE 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 +FGPF S + +++TF LR+C + +R CL + I CSGPC +S E+Y Sbjct: 126 FFGPFVSARERDYIFEVVRKTFQLRTCR----KMPSRACLRYHIGACSGPCISSVSVEEY 181 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--- 237 E V +A L G L E + M + K+ +E A+ RD +AAL ++Q + Sbjct: 182 GEKVKKAISVLKGNIRELIESMETEMKEMAAKQMFEQAMELRDEIAALEYLQEKQNMERQ 241 Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D + N + + G F + L FL Q+Y++ Sbjct: 242 KKYDEDILNYIVRDNNVYLMLFKVYKGTLEDKQDFVFAFGED-----FLEEFLVQYYSEN 296 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 PE +++ E +E+ + G KVK+ VPKQG+K+++++ L N Sbjct: 297 DPPEELIVPEPLDESLV--EFLAHVKGKKVKVAVPKQGDKKELLDLVLKNVEIGFFGDRK 354 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 L+ K +LP IP IE +D SH+ G + VG MV K+ YR+F Sbjct: 355 K-------LEALQSKLSLPKIPNVIECFDISHLSGTATVGSMVQFRGGRPDKHNYRRF-- 405 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 V+ DD A + V+ RR+S+L++++ PD++I+DGGKGQLS Sbjct: 406 KIESVEGIDDFASIAEVVRRRYSRLLEDK--------------HEMPDLIIIDGGKGQLS 451 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 +A L+KL V ++ IISIAK + E + L + + F+Q +RDEA Sbjct: 452 SAFQELRKLRV--KVPIISIAKREE-----EIYVPGLKSPLPIKKDEKASLFVQEIRDEA 504 Query: 538 HRFAITTHRKRRKKAA 553 HRFAI +R R+KA Sbjct: 505 HRFAINYNRLLRQKAL 520 >gi|313673372|ref|YP_004051483.1| excinuclease abc, c subunit [Calditerrivibrio nitroreducens DSM 19672] gi|312940128|gb|ADR19320.1| excinuclease ABC, C subunit [Calditerrivibrio nitroreducens DSM 19672] Length = 602 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 176/628 (28%), Positives = 295/628 (46%), Gaps = 46/628 (7%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 ++ +++P+ PGVY +D G++LYVGKA +L+KR+ SY +S+ + + T M+S + +R+ Sbjct: 3 INLDEIPDNPGVYTFIDKNGKILYVGKAISLKKRLSSYFNSSPKSPKTTQMLSLAHEVRY 62 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T E EALLLE N+IK KP++NI L+D KS+PYI +T + + RD+S Sbjct: 63 IITTNEAEALLLENNIIKNEKPKYNIRLKDAKSYPYIKLTVEE-FQRIIITRDTSDKNAL 121 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGPF +V+ + +N + + F +R+C+D +F+ + + CL +QIK+CSGPC IS E Y Sbjct: 122 YFGPFVNVNGLRGILNEILKIFPIRTCSDGIFKKK-KVCLNYQIKQCSGPCEEMISKEDY 180 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + V E KK +G +KE + M + +E A RDR+ AL + + N Sbjct: 181 EKLVDEVKKLFTGKVSEIKENLKEKMFNYSKNLLFEEAAKIRDRINALESLFTRQGVVIN 240 Query: 241 R---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D F L ++N I + F G+ +KT+ + +S ++ Q Y+ Sbjct: 241 DDRSFDIFILKEDQNFKIICSLFIRNGKLLS-----VKTEFIDDDDFDISLYILQLYSIT 295 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGE-KRKIIEQALINAHRSHTQKL 356 P + + + V +KI+E + N L Sbjct: 296 QQPPESIGIIVNDTLIKNSDPLIEAVYKTTGHKVSLIRSIDKKILEIGIENIEVEREFFL 355 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + + + L+ IE D SH+ G + VG V F+K++YR++ Sbjct: 356 KKQDNLKNALEKLNSLTNCDVNT--IECVDISHLYGKNVVGASVCWSNGEFIKSRYRRYK 413 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + T DD + ++ R+ + ++ E + D+ I+DGG GQL Sbjct: 414 ITNE---TNDDFTAIYELMSRKANNILDGSEQKS--------------DLYIIDGGVGQL 456 Query: 477 SAAQGVLKKLNVENRITIISIAKG----PKRSAGMEKF----FVKKGEALVLNMRDPILY 528 +AA K+ NV I ISI+KG +R E + + DP+L Sbjct: 457 NAALKAFKEKNVNAFI--ISISKGRGLKEQRFESEETIASIHLPNRKNPVKPKRNDPMLL 514 Query: 529 FIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTV--KMISRSS 585 I+++RDE HRF I RK +K S + ++ GIG R + +L ++ + + I + Sbjct: 515 LIEKIRDEVHRFVINYMRKSYEKILLKSGILDVEGIGEKRLKKILSTYPDILYREI---T 571 Query: 586 PETLASIEGISKKIACKIYNHFHKNTSH 613 E L+ + I+ K+ + K Sbjct: 572 KEELSKNCNLPLTISEKLIQYIKKIKDE 599 >gi|307721707|ref|YP_003892847.1| Excinuclease ABC subunit C [Sulfurimonas autotrophica DSM 16294] gi|306979800|gb|ADN09835.1| Excinuclease ABC subunit C [Sulfurimonas autotrophica DSM 16294] Length = 600 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 172/625 (27%), Positives = 293/625 (46%), Gaps = 48/625 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54 +Q+P+ PG+YQ D G +LYVGKA NL R+KSY S+ + RI MI+Q Sbjct: 6 KIQQLPDKPGIYQYFDKNGHLLYVGKAKNLANRVKSYWQFTPELCASSQLSLRIKKMINQ 65 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114 ++ + + +E +AL+LE ++IK+L P++NILLRDDK++PYI I + P R Sbjct: 66 TVSMNYIIVNSEHDALILENSLIKQLGPKYNILLRDDKTYPYIYIDNSQDYPRFDITRKI 125 Query: 115 ST-IQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 +Y+GP++ ++S+ L + CL +QI +C GPC Sbjct: 126 IRSKDITYYGPYS--VGARDILSSIYDICKLVQKK--ACLKSKKLCLYYQIDKCLGPCEL 181 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 +S E+Y + V+ A + L + + A + +E A RD + + Sbjct: 182 PVSKERYAQEVNLATSLIKNKKLLLSKLQEKMEFYA-EELRFEEAAQLRDTMERIERSHI 240 Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290 ++ + D F++ ++ A + F G+ + ++ + ++ S L Sbjct: 241 KSEIDFATNENYDIFAIESSQTRAVVVKIFMRHGKIISSTHEYINLNEGLDTNELYSRAL 300 Query: 291 RQFYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA 348 FY D+ P +L+ E+ E+ L++ + K +I +P++G+K+ +I A +NA Sbjct: 301 LGFYKDEKPPIVVPLLIGEDFEDKELIQNYLTNIFEQKAQIIIPQRGKKKDLIALAKLNA 360 Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 K E + IL++ + L +P R+E++DNSH+ G + VG M+V F Sbjct: 361 TE--LLKRDKETLNTKILQEVQELCQLQKLPNRVEVFDNSHMSGVATVGAMIVYENGKFD 418 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 K YR ++L +D+ MR L + + + +S S PD+ I Sbjct: 419 KKSYRTYHL-----DARDEYGQMRETLTK----------------RVESFSKSSPPDLWI 457 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNMRD 524 LDGG L A +L+ + + IS AK + + + E L D Sbjct: 458 LDGGATLLKLAVDILQSNGINLDVIAISKEKVDAKAHRAKGKAQDIIYTRDEVFRLKTSD 517 Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISR 583 L +IQ LRDEAHR AIT H+K + K S L ++GI P + + LL +GT + + Sbjct: 518 KRLQWIQNLRDEAHRAAITFHKKTKLKLDQESKLLSLHGISPAKIQKLLNHYGTFEALKN 577 Query: 584 SSPETLASIEGISKKIACKIYNHFH 608 + + ++S+ ++ K A I N + Sbjct: 578 VTFDDISSL--LNTKDAKTIKNFYK 600 >gi|119367674|sp|Q7NBC4|UVRC_MYCGA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C Length = 592 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 160/614 (26%), Positives = 281/614 (45%), Gaps = 34/614 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + P+ PG Y + ++Y+GKA N+ KR+ Y + + + ++++I + F Sbjct: 8 KLDLAPKKPGCYLWKNHLNEIIYIGKAKNIYKRVHQYFNGP-KDLKTSKLVNEIFYVEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 E EALLLEAN+IK+ KPR+NILL+D+ +PYIL+T K K P L R+ +G + Sbjct: 67 EVNNENEALLLEANLIKKHKPRYNILLKDNNGYPYILMT-KEKYPRLIYTRNFDPKKGKH 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GPFAS + K + L + F + R C + + C CT E+S Y Sbjct: 126 YGPFASSEM--KAYDLYNLLLKLFPLK-NCFNKKGRKCEFYDLNLCMKACTHEVSEADYE 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + F G + + + + A+ K D+E A + D A++ I + Sbjct: 183 VMKKKIDYFFHNGADQVLKDLKEKESIASEKFDFEQAKKYLDLQKAINLIFDKQIINLYS 242 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 R+D + +N+ CI + Q T E ++++ +L Q+Y D Sbjct: 243 AKERIDVLAYQIKENVICIVLFSYVSSQLVSKNTICDFYYGEE--QEVITSYLSQYYKDN 300 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P+ + S + +LL+ S + + + + + + + Sbjct: 301 IKPKILYASLDQANATLLKDSLGIEIINPTSGKMNEIMSLAL--QNVTNELSQKYDSLVK 358 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 E + L K + + +E+YDNS++ V M+V N F K +YRK+ + Sbjct: 359 KEQRINLALDQLKKLIKVDKLNH-LEVYDNSNLFNTDKVSAMIVFENNQFNKKKYRKYKI 417 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 D M V+ RR Q +KN +F PD++ILDGGK Q+ Sbjct: 418 KDQQALG--DYHYMYEVIYRRLYQALKN-------------NFVDLPDLIILDGGKHQVL 462 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 AA+ + L ++ +I +I +AK K +K + + L+ + +F+ L++E Sbjct: 463 AAKKAIVDLQIDKKINLIGLAKNNKHQT--DKIVTFDLDEISLDKSSALYFFLANLQEEV 520 Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 H+FAI+ RK + K+ Y S LD+I G+G RK+ L++ F T+ I ++S +L+ + + Sbjct: 521 HKFAISFFRKTKAKSLYDSILDQIKGLGKKRKQQLIEHFKTIDEIKKASIASLSQV--LP 578 Query: 597 KKIACKIYNHFHKN 610 +IA K+ ++ Sbjct: 579 IEIAKKLKQKLDQS 592 >gi|299137105|ref|ZP_07030288.1| excinuclease ABC, C subunit [Acidobacterium sp. MP5ACTX8] gi|298601620|gb|EFI57775.1| excinuclease ABC, C subunit [Acidobacterium sp. MP5ACTX8] Length = 699 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 143/685 (20%), Positives = 264/685 (38%), Gaps = 84/685 (12%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH--THRITHMISQINNIR 59 +P G Y + G V+YVGKA NL+ R++SY N + + ++ + +I Sbjct: 6 KIRTLPTGAGCYLYKNAEGEVIYVGKAKNLRARVRSYFLEANQLASAKTGSLMREAVDIE 65 Query: 60 FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG 119 + + E EAL LE N+IK+ KPRFNILLRDDK++PYI +T + P ++ R Sbjct: 66 YILVANEREALALENNLIKQRKPRFNILLRDDKTYPYIKLTLTDRHPKVFVTRKLRKDGS 125 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSE 178 +YFGP+ + + ++ + R+F + SC + R+ R CL + IKRC GPC +S+E Sbjct: 126 AYFGPYFPGNLAHRLVDVIHRSFLIPSCKVDLNRYHPRACLQYYIKRCLGPCVEGFVSTE 185 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + + + + FL G L+ ++ M A +E A RD+L +S Q+ Sbjct: 186 EYRQAIRDVQLFLEGKPSELEARLTERMTAAAENMQFELAARLRDQLITVSQAQDRQRIA 245 Query: 239 YNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ--ILSYFLRQF 293 D F + ++ + G+ F + E + Sbjct: 246 STDDEDADVFGFHFENDMLAVNLFHMRAGKIVDRRDLFWEDLPELDLPASLRSEEVEPEL 305 Query: 294 YTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 D P + + + ++ + + + ++ + + A S + Sbjct: 306 EPDPSVPAPEITEDNSITEEHSIVASPFEADQPHGEVIAEACDEPTLATRYSQLAAGSPS 365 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSH---------------------IMG 392 Q + + L D G Sbjct: 366 QSTFSPAAFFSALLKQLYLDQGYVPKHIYVPVDFPDRVLLAEILRERTGHKIEIAAPQRG 425 Query: 393 CSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD------------------CAMMRMV 434 +V ++ ++F + +K + Sbjct: 426 DKRSLVDLVCQN--AKQSYDQRFRVLQPSIKNMQEALQEALTLAEPPERIECFDISHIQG 483 Query: 435 LERRFSQLIKNEENLNFHPKKQ-EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRIT 493 E S ++ + + ++ + + D + K + + I Sbjct: 484 AETVASMVVWEKGVMKKADYRKFQVKTVTGVDDFASMREIIHRRYKRLNENKEPLPSLIL 543 Query: 494 I----------------ISI--------AKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 I I + AK + ++ + +VL+ R P+L+ Sbjct: 544 IDGGLGQLHAAAQALTEIGLTTQPLASIAKREEIIY----VHGQEDDPVVLDRRSPVLHV 599 Query: 530 IQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS---S 585 IQ++RDE+HRFA+T HRKRR+ + S LD+I G+G + ++ LL+ FG+V+ + ++ + Sbjct: 600 IQKIRDESHRFAVTYHRKRRQMRDRTSELDDIPGVGTITRQRLLEHFGSVRALKQAAEKN 659 Query: 586 PETLASIEGISKKIACKIYNHFHKN 610 P+ L S+ ++K A KI F + Sbjct: 660 PDALLSV--VNKATAEKIRQFFTEE 682 >gi|255322445|ref|ZP_05363590.1| excinuclease ABC, C subunit [Campylobacter showae RM3277] gi|255300353|gb|EET79625.1| excinuclease ABC, C subunit [Campylobacter showae RM3277] Length = 604 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 177/628 (28%), Positives = 278/628 (44%), Gaps = 53/628 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQINN 57 +P PGVYQ D AG++LYVGKA L+ R+KSY S + RI MIS+ + Sbjct: 8 SLPAKPGVYQYFDKAGKLLYVGKAKILKNRVKSYFSFTPELAPSPKVSPRIHKMISEAVH 67 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117 + + VT +E +AL+LE + IK+L+P++NILLRDDK++PYI + P R Sbjct: 68 LEYIVTPSEADALILENSFIKQLRPKYNILLRDDKTYPYIYVNLDEDFPRFEITRKIVRG 127 Query: 118 QG-SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176 + YFGP+ V + +++L+ +F L ++ T L +QI P +IS Sbjct: 128 KNIKYFGPY--FRGVRELLDALRLSFKLVQSKSAL--KATGAYLPYQIGYSEAPLISKIS 183 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 Y + V A L+ L + + MN+ E+YE A + RD++ A+ + + Sbjct: 184 PADYAKVVESAIAALNNPLSMLPK-LVNLMNKYAQNENYEQAALVRDKINAIKDLDVKIE 242 Query: 237 SIYNRMDCFSLYHN--KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 +++ F ++ + F G + S+ + + + Sbjct: 243 VDLAKLEDFEVFAVGAEQNLLCAVRFSVHGGKISGVYQNITNAKMSSQGDLNDAYKQIVL 302 Query: 295 TDKP-----CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH 349 P I E E+ SL+E ++G K I+VPK GEK++I E AL NA Sbjct: 303 ESFPAGAPVVSAKIYTLEAFEDASLVEEILTARHGRKFSISVPKIGEKKRICEMALTNAQ 362 Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 + L + L + + F L P IE +DNSH+ G +AVG MV F K Sbjct: 363 VFIQKYL--KTHDDAFLDELKEYFGLACAPHVIETFDNSHMFGAAAVGAMVRFEHGNFAK 420 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 YR +L D M +M+ ER + S PD+ ++ Sbjct: 421 EHYRHMHLS----HANDYDQMRQMLTERALR-----------------FDKLSPPDLWLI 459 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNMRDP 525 DGG+ L A ++ I IS AK + G L + D Sbjct: 460 DGGQALLDLASDIIASSGANVDILAISKEKIDAKAHRAKGGARDKIYASSGVFTLPVGDR 519 Query: 526 ILYFIQRLRDEAHRFAITTHRK-RRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISR 583 L F QRLRDEAHRFAIT H+K +RK+ S L + G+ L++ +G+ + I Sbjct: 520 RLQFFQRLRDEAHRFAITFHQKTKRKEDLGASKLAD-AGVSAGSIAKLVKFYGSFEAIMT 578 Query: 584 SSPETLASIEGISKKIACKIYNHFHKNT 611 ++ E + + ++ +A KI ++ Sbjct: 579 ATSEEIEKVT--NRSVAAKI-EQLKESE 603 >gi|223040233|ref|ZP_03610511.1| excinuclease ABC, C subunit [Campylobacter rectus RM3267] gi|222878486|gb|EEF13589.1| excinuclease ABC, C subunit [Campylobacter rectus RM3267] Length = 604 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 178/628 (28%), Positives = 277/628 (44%), Gaps = 53/628 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQINN 57 +P PGVYQ D AG++LYVGKA L+ R+KSY S RI MIS+ + Sbjct: 8 SLPAQPGVYQYFDKAGKLLYVGKAKILKNRVKSYFSFTPSLAPSPKLGPRIHKMISEAVH 67 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST- 116 + + VT +E +AL+LE + IK+L+P++NILLRDDK++PYI + P R Sbjct: 68 LEYIVTPSEADALILENSFIKQLRPKYNILLRDDKTYPYIYVNLDEDFPRFEITRKIVRG 127 Query: 117 IQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176 YFGP+ + +++L+ +F L ++ T L +QI P +IS Sbjct: 128 KNVKYFGPY--FRGARELLDALRLSFKLVQSKSAL--KATGAYLPYQIGYSEAPLISKIS 183 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 Y + V A L+ L + + MN+ E+YE A + RD++ A+ + + Sbjct: 184 PADYAKVVEGAIAALNNPLSMLPK-LVNLMNKYAQNENYEQAALVRDKINAIKDLDVKIE 242 Query: 237 SIYNRMDCFSLYHN--KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 +++ F ++ + F G + S+ + + + Sbjct: 243 VDLAKLEDFEVFAVGAEQNLLCAVRFSVHGGKISGVYQNITNAKMSSQGDLNDAYKQIVL 302 Query: 295 TDKP-----CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH 349 P I E E+ SL+E ++G K I+VPK GEK++I E AL NA Sbjct: 303 ESFPAGAPVVSAKIYALEAFEDASLVEEILTARHGRKFSISVPKIGEKKRICEMALANAQ 362 Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 + L + L + + F L P IE +DNSH+ G +AVG MV F K Sbjct: 363 VFIQKYL--KTHDDAFLDELKEYFGLACAPHVIETFDNSHMFGTAAVGAMVRFEHGNFAK 420 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 YR +L +D MR +LE R + K S PD+ ++ Sbjct: 421 EHYRHMHL-----SHANDYDQMRQMLEGRALRFDK----------------LSPPDLWLI 459 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNMRDP 525 DGG+ L A ++ I IS AK + G L + D Sbjct: 460 DGGQALLDLATDIIASSGANVDILAISKEKIDAKAHRAKGGARDKIYASSGVFTLPVGDR 519 Query: 526 ILYFIQRLRDEAHRFAITTHRK-RRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISR 583 L F QRLRDEAHRFAIT H+K +RK+ S L + G+ L++ +G+ + I Sbjct: 520 RLQFFQRLRDEAHRFAITFHQKTKRKEDLGASKLAD-AGVSAGSIAKLVKFYGSFEAIMT 578 Query: 584 SSPETLASIEGISKKIACKIYNHFHKNT 611 ++ E + + ++ +A KI ++ Sbjct: 579 ATSEEIEKVT--NRSVAAKI-EQLKESE 603 >gi|319790154|ref|YP_004151787.1| excinuclease ABC, C subunit [Thermovibrio ammonificans HB-1] gi|317114656|gb|ADU97146.1| excinuclease ABC, C subunit [Thermovibrio ammonificans HB-1] Length = 586 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 161/605 (26%), Positives = 270/605 (44%), Gaps = 32/605 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 +++PE PGVY D AG+VLYVGK+ NL++R+ +++++ + + ++ + + Sbjct: 4 KLKEVPELPGVYLFKDSAGKVLYVGKSKNLRERLSTHLNATDPNDKSYRIVRASADFDYI 63 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V E EAL LEA +IK P FN+LL+D KS+PY+++T + P + R S + G Sbjct: 64 VVRNEREALALEAELIKEHLPPFNVLLKDGKSYPYLVVT-DEEFPTVKVVRRSFSGGGER 122 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPF + L R F LRSC + + R +PCL + I+RC+ PC G +S ++Y Sbjct: 123 FGPFVPPKSAYNLRELLTRLFRLRSCKE--LKKRDKPCLQYHIERCTAPCAGLVSKKEYR 180 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + V A +FL G L ++ + +A K ++E A RD+L A+ + + ++ Sbjct: 181 KQVERALRFLKGDVKGLISELHSEIEEAAEKLEFERAARLRDQLIAVKAVFEKSAPLFEE 240 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 +++ + + F + K L + Sbjct: 241 FKECDIFYLEERGEL---FTGVKLTVRGGIIYGKESFHLDPVDPWDEGLLSSVFSLGVEK 297 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 + + G K+ G+ + ++ + Sbjct: 298 LDVNTVGTMWLKAYYGEEGVPAGVKLLANFKPLGDYEVHPIPEELLPLLRRNRRAVSYSL 357 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 L+ ++ +P R+E +D S + G + V VV + F K++YR+F + Sbjct: 358 SLKELEREFEEVFGEPLPLRVECFDISTLQGEATVASCVVWEKGQFKKDEYRRFKVKS-- 415 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 V DD A M VL RRF ++ + E PD+VI+DGG GQL+ A Sbjct: 416 VSGVDDYASMEEVLTRRFRRIKRGE--------------VKEPDLVIVDGGIGQLNVALK 461 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 V + R + SIAK E + GE + + F +RDEAHRFA Sbjct: 462 VRDTFGLGFR--VFSIAKRE------EVVYTDLGEVVETKRFPHLFRFFTSIRDEAHRFA 513 Query: 542 ITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 ++ +RK R K +S L + GIGP R+ L+ + + + ++ SP LA + GI K+A Sbjct: 514 LSYNRKLRTDKMLHSFLSSVKGIGPKRRALIEKLYPDLSELAAVSPSELAKL-GIPLKVA 572 Query: 601 CKIYN 605 ++ Sbjct: 573 REVVE 577 >gi|45358291|ref|NP_987848.1| excinuclease ABC subunit C [Methanococcus maripaludis S2] gi|74555013|sp|Q6LZA1|UVRC_METMP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|44921049|emb|CAF30284.1| excinuclease ABC subunit C [Methanococcus maripaludis S2] Length = 527 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 167/565 (29%), Positives = 266/565 (47%), Gaps = 53/565 (9%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 ++ +P+ PG Y + +G V+YVGKA NL+KR+ SY + NH + ++ I + F Sbjct: 2 INISDIPKNPGCYIYKNESGTVIYVGKAKNLKKRVSSYFNKKNHDPKTEKLVKSIYEMEF 61 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT EVEAL+LE +IK+ P++NI L+D K++ YI I+ + P + R+ S Sbjct: 62 IVTDNEVEALILENTLIKKYSPKYNIDLKDSKNYAYIYIS-EENFPRIGISRNKSKKG-K 119 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 ++GPF S + ++ L++TF +RSC + RPCL IK C+ PC+G+I+S+ Y Sbjct: 120 FYGPFTSAKERDYVLDVLKKTFKIRSCKNMH----KRPCLRHHIKNCTAPCSGDITSKDY 175 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + + +A+ L G +L ++ MN+ + +E A++ R+ + A+ ++ + + Sbjct: 176 LNQIKKAEHILKGNIDSLIHELKNEMNEKSKNLQFEEALLIREEINAIERLKTRQNVKRD 235 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D S+ I G F FL Q+Y++ Sbjct: 236 VKYNEDVISILEKSGKLHIMVFNVLKGTLFDRKYFEFDYTEN-----FFEEFLIQYYSEN 290 Query: 298 PCPENILLSEEAEETSLLE---------ISFFKQYGYKVKITVPKQGEKRKIIEQALINA 348 P I++SE + K+ G KV +PKQGEK+++++ A+ N Sbjct: 291 DVPSEIIISELPKNLEEDNNEYSSDALLEYLSKKKGSKVAFKIPKQGEKKQLLDLAIKNL 350 Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 S K L P IE +D SH+ G S VG +V Sbjct: 351 EIYVNGNEIKVQS-------LKNKLMLDKSPNIIECFDISHLSGTSTVGSVVQFRNGKPD 403 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 K YR+F + V DD + V+ RR+S+L++ PD++I Sbjct: 404 KKNYRRFKIKT--VSGIDDFKSISEVVFRRYSKLLEEN--------------LELPDLII 447 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 +DGGKGQLS+A L+KL + +I +ISIAK + E + L + + Sbjct: 448 IDGGKGQLSSAFSELRKLKL--KIPLISIAKREE-----EIYTPGIENPLPIKKNEKASL 500 Query: 529 FIQRLRDEAHRFAITTHRKRRKKAA 553 FIQ +RDEAHRFAI +R RKK Sbjct: 501 FIQEIRDEAHRFAINYNRLLRKKEL 525 >gi|26553580|ref|NP_757514.1| excinuclease ABC subunit C [Mycoplasma penetrans HF-2] gi|81748060|sp|Q8EWS6|UVRC_MYCPE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|26453586|dbj|BAC43918.1| excinuclease ABC subunit C [Mycoplasma penetrans HF-2] Length = 589 Score = 369 bits (946), Expect = 1e-99, Method: Composition-based stats. Identities = 161/610 (26%), Positives = 282/610 (46%), Gaps = 35/610 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 +++P PG Y D G V+YVGKA +L RIK Y + + + ++I ++ + Sbjct: 8 KLKKIPHKPGCYLWKDKNGIVIYVGKAVDLANRIKQYFLKDR-DLKTKKLANEICDVDYV 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYK-HRDSSTIQGS 120 V E E+LLLE N+I + KP++N+LLR+ +FPYIL+T K + P + H + I+G+ Sbjct: 67 VVNNENESLLLENNLIAKYKPKYNMLLRESNAFPYILVT-KEEHPRILYSHDSTKKIKGT 125 Query: 121 YFGPFASVDAVE-KTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 Y+GPFA+ + + + N + R F LR C + + C+ + I +C GPC +++ + Sbjct: 126 YYGPFANSNIKKYELYNFINRIFPLRKCN----KLPNKKCIYYDIGQCLGPCIKKVTRQD 181 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y ++ E F SG + ++ E++ + QA K +E + + + L D I+ Sbjct: 182 YEPYLKEINDFFSGKSKSIDEQLEKKEIQAAEKLMFEDSQKYLELRKNLKMFSERQDIIF 241 Query: 240 ---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 N D Y +N+ I + G SE + + Sbjct: 242 SQKNDEDIIGFYCKENVISIVIFKYVNGSLLSKYDLITVFYSELDEILLTLIYEYYSKIA 301 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P+ + LS + L +S + + K+ A+ + Q + Sbjct: 302 IELPKTVYLS--LSDEKLKTLSESLKIKFLNPSKGVKKDVMDTAFNNAVEIMKNKYLQLI 359 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 S + L++ K + R+EI+DNS+I + VG MVV KN+YRKFN Sbjct: 360 SNQNRELNSLEELQKLLDIK-DLYRMEIFDNSNIFNTNKVGAMVVYENGVKNKNEYRKFN 418 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + D M+ V+ RR+ SF P+++I+DGGK Q+ Sbjct: 419 IKDE--DANSDYDYMKEVIYRRYK--------------NNTASFGEIPNLIIVDGGKPQV 462 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 AA LK L +++ I +I +AK K ++ + L+ + + +F+ ++DE Sbjct: 463 KAALESLKFLELDSIIPVIGLAKDDKHKT--DRIVKWDFSEIKLDKKSDLYFFLLNIQDE 520 Query: 537 AHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 HRFAI+ +R ++ K+ + + L +I +G R LL+ + T+ I +S E L+ I + Sbjct: 521 VHRFAISFYRNKKSKSLFENSLYKIKNLGKTRIEKLLEKYETLDKIKEASVEELSQI--V 578 Query: 596 SKKIACKIYN 605 ++A +I Sbjct: 579 PIEVAKEIKK 588 >gi|222823523|ref|YP_002575097.1| excinuclease ABC, subunit C [Campylobacter lari RM2100] gi|222538745|gb|ACM63846.1| excinuclease ABC, subunit C [Campylobacter lari RM2100] Length = 597 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 183/628 (29%), Positives = 302/628 (48%), Gaps = 57/628 (9%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54 + +P PGVYQ DI G++LYVGKA NL+ R++SY + + N++ RI MISQ Sbjct: 5 ELKTLPNLPGVYQYFDIQGKLLYVGKAKNLKNRVRSYFNFTPNLCPNPNNSLRIQKMISQ 64 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHR-D 113 ++ F T +E +AL+LE + IK+L P++NILLRDDK++PYI I P R Sbjct: 65 TYHLEFITTKSEADALILENSFIKQLHPKYNILLRDDKTYPYIYIDLNEDFPRFEITRKI 124 Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 + YFGPF ++ +N+L +F LR CL +QIKRC GPC Sbjct: 125 IKKNKIKYFGPF--FKGAKELLNALYLSFELRQKKSC-----KELCLFYQIKRCKGPCEQ 177 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 +IS ++Y + V +A + L + + + M + E+YE A RD++ + + Sbjct: 178 KISKQEYEKIVQKATQALLNPLSLI-KNLENKMLEYAKNENYEEAATIRDQIKTIEDLSV 236 Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFL---KTDSESTNAQILS 287 D F+++H N+ + + G+ + L D NA Sbjct: 237 KIQIDLAKLEDFDVFAIHHKANILSMVRFVINNGRIISSNHKVLTLNHQDEFDLNAIYKQ 296 Query: 288 YFLRQFYTDKPCPENILLSE-EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 Y L + D P + + E E+ +LL+ +++ K + PK GEK+ + E AL Sbjct: 297 YILENYTQDSPINSTRIYTHEEFEDMNLLQNLLSERFSKKFHLKTPKLGEKKALCELALE 356 Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 NA + + L ++ + LK+ + F L + P IEI+DNSH+ G + VG +V + Sbjct: 357 NAKINIQKHLRSDD--YLFLKELKEFFNLQNYPNYIEIFDNSHMQGEANVGALVAYKDGK 414 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 F K+ YR ++L + +L+ + + + PD+ Sbjct: 415 FDKSSYRHYHLSYKND--------YDQMLQTLSKRAL-------------SFDKKPPPDL 453 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRS-----AGMEKFFVKKGEALVLN 521 ++DGG L A ++K I IS K ++ + +K + ++G+ + L+ Sbjct: 454 WLIDGGDALLKLANDIIKSSGANVDILAISKEKIDAKAYRAKGSAKDKIYTQEGK-IQLS 512 Query: 522 MRDPILYFIQRLRDEAHRFAITTHRK-RRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVK 579 D L F+Q+LRDEAHRFAI+ H+K +RK+ S L ++ GI + L +G+ Sbjct: 513 TDDKKLQFLQKLRDEAHRFAISFHQKTKRKQDLQNSRLIQL-GISQGYIKKFLDYYGSFD 571 Query: 580 MISRSSPETLASIEGISKKIACKIYNHF 607 IS++S + L ++ + KIA I + Sbjct: 572 EISKASFDELKTLS--NTKIAKLIKENL 597 >gi|224534778|ref|ZP_03675350.1| excinuclease ABC subunit C [Borrelia spielmanii A14S] gi|224514026|gb|EEF84348.1| excinuclease ABC subunit C [Borrelia spielmanii A14S] Length = 598 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 165/605 (27%), Positives = 281/605 (46%), Gaps = 32/605 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P G Y+ML+ ++LY+GKA NL+ RIKSY + +I ++ + +I T Sbjct: 14 KLPTTSGCYKMLNENKKILYIGKAKNLRSRIKSYFLEK-KSQKIKILMKNVKSIEVITTN 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK KP +N+ L+D K +P I IT K P ++K R Q YFGP Sbjct: 73 SEYEALLLECNLIKTHKPDYNVKLKDGKGYPMIRIT-HEKYPRIFKTRKIINDQSEYFGP 131 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F +V +++ ++ + +TF +R C + PC+ + + +C G C E ++Y E + Sbjct: 132 FTNVKKLDQVLDLINKTFKIRKCK----KKSNAPCMYYHMGQCLGVCYKENLEKEYQEEL 187 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 +AK L+G + +I + A KED+E+AI ++ ++L I Sbjct: 188 DKAKSILNGNISEILSQIDIKLKLAIQKEDFETAIKLKEIKSSLIEITQIQIVAKTNNLN 247 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D ++ +++ I + G+ F ++ + + + P+ Sbjct: 248 TDYVYVHPGEHVNTIIVLKYRNGKLVERDANFDESICKKNELVLQFLIQYYTSINMIVPD 307 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 I + + T E + K +I + E KI+E A+ NA S + E Sbjct: 308 KIHIFLKDVNTKNAEKLINEIKNTKTEIIYKETEEILKIMEMAISNAELSLREY---ENK 364 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 L+ + +PK IE +D +H+ G V MV K Y+ + L+ Sbjct: 365 SNKALESLKICLEMDKLPKIIEGFDIAHLKGKETVASMVTFKMGIPFKEHYKLYKLNSLS 424 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 DD ++ V+ RR+S++I P+++++DGGKGQL+AA Sbjct: 425 KGEIDDFKAIKEVILRRYSEIIN--------------KNLELPNLILIDGGKGQLNAAFS 470 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 +LK L +EN + + S+AK + F + + L P L +Q +RDEAHR A Sbjct: 471 ILKGLKIENNVKVCSLAKKHET-----IFLTTNKKGINLPQGHPALRILQNVRDEAHRKA 525 Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 ++KRR+K +I+GIG + +L+S GT K I S ++ ++ +IA Sbjct: 526 NEFNKKRREKITL-LYTKIHGIGEKTAQKILKSIGTYKDILPLSECEISKKIKVNIEIAK 584 Query: 602 KIYNH 606 +I Sbjct: 585 RIKEF 589 >gi|313903594|ref|ZP_07836984.1| excinuclease ABC, C subunit [Thermaerobacter subterraneus DSM 13965] gi|313466147|gb|EFR61671.1| excinuclease ABC, C subunit [Thermaerobacter subterraneus DSM 13965] Length = 791 Score = 367 bits (943), Expect = 3e-99, Method: Composition-based stats. Identities = 138/469 (29%), Positives = 222/469 (47%), Gaps = 13/469 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVT 63 +PE PGVY D G+VLYVGKA +L++R++SY S+ H RI M+ + + F VT Sbjct: 89 DLPEQPGVYLFKDAQGQVLYVGKARSLRQRVRSYFQSSRHLPARIQRMVERAAALEFIVT 148 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 EVEAL+LE +IKR +PR+N+ LRDDK++PY+ + P + R YFG Sbjct: 149 RNEVEALVLENTLIKRYRPRYNVRLRDDKTYPYLKVHVHEDWPRVSIARQVQDDGARYFG 208 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ ++++ + ++R F RSC+D R RPCL + I RC PC ++Y Sbjct: 209 PYTHSASLQEALRLIRRVFPYRSCSDHRLRRGGRPCLHYYIGRCLAPCAALCDRDRYDAM 268 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM- 242 + + FL G + + E++ M A + ++E A RD+L AL + R Sbjct: 269 IRDLIAFLEGRSREVLERVEAEMQSAAARWEFERAAELRDQLRALHQVLEQQQVASPRRA 328 Query: 243 --DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-C 299 D + + A Q F G+ G + + ++L+ FL Q+Y Sbjct: 329 EEDAIGIARQGDRAHAQVFFVREGRIIGREQLSMTGVDGLDDGELLAAFLTQYYGRATFV 388 Query: 300 PENILLSEEAEE--TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHT 353 P ILL E ++ ++ G +V++ P++G KR+ +E A NA ++ T Sbjct: 389 PREILLPAELPPGEAEVIGRWLSQRRGVQVRLHRPQRGTKRRWVELAEHNARLLLAQAET 448 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + L++ + L P+RIE YD S+ G VG MVV+ K +YR Sbjct: 449 DDQVRQDRARRALEELARYLDLDEPPRRIECYDISNFQGAQPVGSMVVMIRGEPAKAEYR 508 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPS 462 +F + V+ +D A M+ VL RR + ++ + Sbjct: 509 RFRIRT--VEAPNDFASMQEVLYRRLRRGLEAQGVPVEGDVPSTAGAGE 555 Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats. Identities = 60/168 (35%), Positives = 104/168 (61%), Gaps = 9/168 (5%) Query: 444 KNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR 503 + F PD++++DGGKGQLSAAQ VL +L + + I + ++AK Sbjct: 606 AGRTPAGDPGAAELRGFADLPDLILIDGGKGQLSAAQEVLDRLGLVD-IPVFALAKR--- 661 Query: 504 SAGMEKFF-VKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEIN 561 E + + + +V+ P L+ +QR+RDEAHRFA++ HR+ R++A +S L+E+ Sbjct: 662 ---FELVYAPDRPDPIVIPRDSPALHLLQRIRDEAHRFALSYHRQLRQRAGLHSVLEELP 718 Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 GIGP R++ LL++FG+++ I+R+S + LA++ G+++ A +Y FH+ Sbjct: 719 GIGPRRRKALLEAFGSLEAIARASEDELAAVPGMNRAAARTVYRAFHR 766 >gi|208434735|ref|YP_002266401.1| excinuclease ABC subunit C [Helicobacter pylori G27] gi|226698353|sp|B5Z7I6|UVRC_HELPG RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|208432664|gb|ACI27535.1| excinuclease ABC subunit C [Helicobacter pylori G27] Length = 594 Score = 366 bits (939), Expect = 7e-99, Method: Composition-based stats. Identities = 166/608 (27%), Positives = 279/608 (45%), Gaps = 52/608 (8%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQ 54 + +P GVYQ D ++LY+GKA NL+KRIKSY ++ + RI M+ Q Sbjct: 8 LKNLPNSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSICNNEITPNHRASLRIQMMVKQ 67 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114 I + + E +AL+LE ++IK+LKP++NILLRDDK++PYI + P R Sbjct: 68 IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127 Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 YFGPF S + ++SL L + + + C+ +QI+RC PC Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCED 183 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 +I+ E+Y++ E + + + + +++ M + + +E A+I+RDR+A + I Sbjct: 184 KITKEEYLKIAKECLEMIENKDRLI-KELELKMERLSSNLRFEEALIYRDRIAKIQKIAP 242 Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290 +D F+ Y N A + F G+ + + + + + + + Sbjct: 243 FTCMDLAKLYDLDIFAFYGASNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302 Query: 291 RQFYTDK-PCPENILLSEEAEETSLLE--ISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347 Y P +L +L E QY K+ +++PK+G+K +IE A+ N Sbjct: 303 INHYQSHLPLIPEQILLNACSNEALKELQEFISHQYSKKIALSIPKKGDKLALIEIAMKN 362 Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 A + +IL++ F L +P R+EI+D SH VG MVV N F Sbjct: 363 AQE--IFSQEKTSNEDLILEEVRSLFNLECVPYRVEIFDTSHHANSQCVGGMVVYENNEF 420 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 K+ YR+++L ++ A M +L RR K P++ Sbjct: 421 QKDSYRRYHLK-----GSNEYAQMSELLTRRALDFAKE----------------PPPNLW 459 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521 ++DGG+ QL+ A +LK + + +I+I+K + G + + L Sbjct: 460 VIDGGRAQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTPSDTFKLL 517 Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580 D L ++Q+LRDE+HR+AI HR + K L + GIG + LL FG+ + Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577 Query: 581 ISRSSPET 588 I ++S + Sbjct: 578 IEKASEQE 585 >gi|159904551|ref|YP_001548213.1| excinuclease ABC subunit C [Methanococcus maripaludis C6] gi|159886044|gb|ABX00981.1| excinuclease ABC, C subunit [Methanococcus maripaludis C6] Length = 527 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 167/562 (29%), Positives = 276/562 (49%), Gaps = 47/562 (8%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 ++ +P+ PG Y +++G V+YVGKA NL+KR+ SY + NH + ++ I ++ F Sbjct: 2 INISDIPKNPGCYIYKNVSGTVIYVGKAKNLKKRVSSYFNKKNHDPKTEQLVKSIYDMEF 61 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT EVEAL+LE +IK+ P++NI L+D K++ YI I+ + P + R+ + +G Sbjct: 62 IVTDNEVEALILENTLIKKYSPKYNIDLKDSKNYAYIYIS-EEDFPRIGISRN-KSEKGK 119 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 ++GPF S + ++ L++TF +RSC + RPCL IK C+ PC+G+I+S+ Y Sbjct: 120 FYGPFTSAKERDYVLDVLKKTFKIRSCKNMH----KRPCLRNHIKNCTAPCSGDITSKTY 175 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + + +A+ L G +L E++ M++ + +E A++ R+ + A+ ++ + + Sbjct: 176 LNQIKKAEHVLKGHIDSLIEELKIEMDKKSKNLQFEEALVIREEINAIERLKIRQNVKRD 235 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 + C + F +GT + + T FL Q+Y + P Sbjct: 236 VKYNEDVISTLEK-CEKIHIMVFNVLKGTLFDRKYFEFDYTEN-FFEEFLIQYYLENEVP 293 Query: 301 ENILLSEEAEETSLLEISF---------FKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 I+LS+ + + ++ G KV +PKQGEK+++++ A+ N Sbjct: 294 SEIILSDLPKNLEEDTKEYNSDALLEYLSQKKGSKVAFKIPKQGEKKQLLDLAIKNLEIY 353 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 ++ K L P IE +D SH+ G S V MV K Sbjct: 354 VNGNEIK-------VESLKNKLMLDKRPSVIECFDISHLSGTSTVASMVQFRNGKPDKKN 406 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YRKF + V DD + V+ RR+S+LI+ L PD++++DG Sbjct: 407 YRKFKIKT--VSGIDDFKSISEVVFRRYSKLIEENLEL--------------PDLIVIDG 450 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 GKGQLS+A L+KL + +I +ISIAK + E + L + + FIQ Sbjct: 451 GKGQLSSAFSELQKLKL--KIPLISIAKREE-----EIYAPGIENPLPIKKNENASLFIQ 503 Query: 532 RLRDEAHRFAITTHRKRRKKAA 553 +RDEAHRFAI +R RKK Sbjct: 504 EIRDEAHRFAINYNRLLRKKEL 525 >gi|207092065|ref|ZP_03239852.1| excinuclease ABC subunit C [Helicobacter pylori HPKX_438_AG0C1] Length = 594 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 170/608 (27%), Positives = 281/608 (46%), Gaps = 52/608 (8%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQ 54 + +P GVYQ D ++LY+GKA NL+KRIKSY ++ + R+ M+ Q Sbjct: 8 LKNLPNSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIRNDEITPNHRASLRVQMMVKQ 67 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114 I + + E +AL+LE ++IK+LKP++NILLRDDK++PYI + P R Sbjct: 68 IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127 Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 YFGPF S + ++SL L + + + C+ +QI+RC PC Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCED 183 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 +I+ E+Y + E + + + + +++ M + + +E A+I+RDR+A + I Sbjct: 184 KITKEEYSKIAKECLEMIENKDRLI-KELELKMERLSNNLRFEEALIYRDRIAKIQKIAP 242 Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290 +D F+ Y N A + F G+ + + + + + + + Sbjct: 243 FTCMDLAKLYDLDIFAFYSGSNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAV 302 Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347 Y PE ILL+ E L+ QY K+ +++PK+G+K +IE A+ N Sbjct: 303 INHYQSHLPLMPEQILLNACSNETLKELQEFISHQYSKKIALSIPKKGDKLALIETAMKN 362 Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 A + +IL++ F L +P R+EI+D SH VG MVV N F Sbjct: 363 AQE--IFSQEKTSNEDLILEEARSLFKLECVPYRVEIFDTSHHSSSQCVGGMVVYENNAF 420 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 KN YR+++L D+ A M +L RR K P++ Sbjct: 421 QKNSYRRYHLK-----GSDEYAQMSELLTRRALDFAKE----------------PPPNLW 459 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGP------KRSAGMEKFFVKKGEALVLN 521 ++DGG+ QL+ A +LK + + +I+I+K + G + + L Sbjct: 460 VIDGGRAQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRAKGGAKDIIHTPSDTFKLL 517 Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580 D L ++Q+LRDE+HR+AI HR + K L + GIG + LL FG+ + Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577 Query: 581 ISRSSPET 588 I ++S + Sbjct: 578 IEKASEQE 585 >gi|254779206|ref|YP_003057311.1| excinuclease ABC subunit C [Helicobacter pylori B38] gi|254001117|emb|CAX29072.1| UvrABC system protein C (UvrC protein) (Excinuclease ABC subunit C) [Helicobacter pylori B38] Length = 594 Score = 364 bits (934), Expect = 3e-98, Method: Composition-based stats. Identities = 168/608 (27%), Positives = 280/608 (46%), Gaps = 52/608 (8%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQ 54 + +P GVYQ D ++LY+GKA NL+KRIKSY ++ + RI M+ Q Sbjct: 8 LKNLPNSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIHNNEIMPNHRASLRIQMMVKQ 67 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114 I + + E +AL+LE ++IK+LKP++NILLRDDK++PYI + P R Sbjct: 68 IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127 Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 YFGPF S + ++SL L + + + C+ +QI+RC PC Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCED 183 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 +I+ ++Y++ + + + + + +++ M + + +E A+I+RDR+A + I Sbjct: 184 KITKKEYLKIAKKCLEMIENKDRLI-KELELKMERLSSNLRFEEALIYRDRIAKIQKIAP 242 Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290 +D F+ Y N A + F G+ + + + + + + + Sbjct: 243 FTCMDLAKLYDLDIFAFYGGNNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302 Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347 Y PE ILL+ E L+ QY K+ + +PK+G+K +IE A+ N Sbjct: 303 INHYQSHLPLMPEQILLNACSNEALKELQEFISHQYSKKIALNIPKKGDKLALIEIAMKN 362 Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 A + +IL++ F L +P R+EI+D SH VG MVV N F Sbjct: 363 AQE--IFSQEKTSNEDLILEEARSLFNLECVPYRVEIFDTSHHSNSQCVGGMVVYENNAF 420 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 KN YR+++L ++ M +L RR K P++ Sbjct: 421 QKNSYRRYHLK-----GSNEYDQMSELLTRRALDFAKE----------------PPPNLW 459 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521 ++DGG+ QL+ A +LK + + +I+I+K + G + G L Sbjct: 460 VIDGGRAQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTPGNTFKLL 517 Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580 D L ++Q+LRDE+HR+AI HR + K L + GIG + LL FG+ + Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577 Query: 581 ISRSSPET 588 I ++S + Sbjct: 578 IEKASEQE 585 >gi|254458673|ref|ZP_05072097.1| excinuclease ABC, C subunit [Campylobacterales bacterium GD 1] gi|207084439|gb|EDZ61727.1| excinuclease ABC, C subunit [Campylobacterales bacterium GD 1] Length = 600 Score = 364 bits (933), Expect = 4e-98, Method: Composition-based stats. Identities = 179/622 (28%), Positives = 291/622 (46%), Gaps = 52/622 (8%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQIN 56 +Q+P+ G+YQ D G +LY+GKA NLQKR+KSY + ++N + RIT MI Q Sbjct: 8 QQLPDSAGIYQYFDKNGHLLYIGKAKNLQKRVKSYFNFTPELKANSNLSLRITKMIKQTV 67 Query: 57 NIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST 116 ++ + V +E +AL+LE ++IK+L P++NILLRDDK++PYI I + K P R Sbjct: 68 SMSYIVVNSEHDALILENSLIKQLNPKYNILLRDDKTYPYIYIDNSQKYPRFDITRKIIK 127 Query: 117 -IQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEI 175 YFGP++ ++S+ L + CL QI +C GPC I Sbjct: 128 AADIKYFGPYS--VGARDILDSVYELCKLVQKKG--CLKSKKLCLYHQIDKCLGPCELPI 183 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 S +Y + + A + + + + + M +E A RDR+ ++ + + Sbjct: 184 SDARYKQELDLAFELIQNKKQLI-KLLEEKMFFYAQNMRFEEAGEIRDRIQRITRSEIKS 242 Query: 236 DSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292 + + D F + ++++ A I F G+ + +++ + ++ L Sbjct: 243 EIDFATKENYDIFVIQNSESRAVIVRIFMRDGKIISSTHDYIQLNEGYDEDELYQRVLLD 302 Query: 293 FYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR 350 FY+ + P IL++ E E ++E + K I +PKQG K+++I+ A++NA Sbjct: 303 FYSKEKPPIIAPILVASEFENLQVIEQHLSTVFEKKASIKIPKQGNKKQLIDLAILNAKE 362 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + ++ + + + L +PKR+E++DNSH+ G + VG M+V + F K Sbjct: 363 LLKKDKNSIDTKLLDDL--KELLLLERLPKRVEVFDNSHMAGVATVGAMIVYEDGKFDKK 420 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YR ++L +D+ A MR L RR KN S PD+ I+D Sbjct: 421 SYRTYHLE-----AKDEYAQMRETLTRRVESFSKN----------------SPPDLWIID 459 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISI------AKGPKRSAGMEKFFVKKGEALVLNMRD 524 GG L A ++ V I II+I AK + + K L D Sbjct: 460 GGATLLKLASEIVDSCGV--FIDIIAISKEKIDAKAHRAKGKADDIIHTKDNIFKLKHSD 517 Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISR 583 L + Q LRDEAHR AI H+K + K S L + GI + + LL FGT + + Sbjct: 518 KRLQWTQNLRDEAHRSAINFHKKTKLKLDNESKLLTLKGISGAKVKKLLNHFGTFEALKT 577 Query: 584 SSPETLASIEGISKKIACKIYN 605 + E + SI ++ K A I N Sbjct: 578 LTIEEIGSI--LNTKDANVIKN 597 >gi|15645440|ref|NP_207614.1| excinuclease ABC subunit C [Helicobacter pylori 26695] gi|3024782|sp|P56428|UVRC_HELPY RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|2313951|gb|AAD07868.1| excinuclease ABC subunit C (uvrC) [Helicobacter pylori 26695] Length = 594 Score = 363 bits (931), Expect = 6e-98, Method: Composition-based stats. Identities = 170/608 (27%), Positives = 281/608 (46%), Gaps = 52/608 (8%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQ 54 + +P GVYQ D ++LY+GKA NL+KRIKSY ++ + RI M+ Q Sbjct: 8 LKNLPNSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIRNNEITPNHRASLRIQMMVKQ 67 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114 I + + E +AL+LE ++IK+LKP++NILLRDDK++PYI + P R Sbjct: 68 IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127 Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 YFGPF S + ++SL L + + + C+ +QI+RC PC Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACIFYQIERCKAPCEN 183 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 +I+ E+Y++ E + + + + +++ M + + +E A+I+RDR+A + I Sbjct: 184 KITKEEYLKIAKECLEMIENKDRLI-KELELKMERLSNNLRFEEALIYRDRIAKIQKIAP 242 Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290 +D F+ Y N A + F G+ + + + + + + + Sbjct: 243 FTCMDLAKLYDLDIFAFYGASNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302 Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347 Y PE ILL+ E L+ QY K+ +++PK+G+K +IE A+ N Sbjct: 303 INHYQSHLPLMPEQILLNACSNETLKELQEFISHQYSKKIALSIPKKGDKLALIEIAMKN 362 Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 A + +IL++ F L +P R+EI+D SH VG MVV N F Sbjct: 363 AQE--IFSQEKTSNEDLILEEARSLFKLECMPYRVEIFDTSHHSSSQCVGGMVVYENNAF 420 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 KN YR+++L D+ M +L RR K P++ Sbjct: 421 QKNSYRRYHLK-----GSDEYTQMSELLTRRALDFAKE----------------PPPNLW 459 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521 ++DGG+ QL+ A +LK + + +I+I+K + G + + L Sbjct: 460 VIDGGRAQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTPSDTFKLL 517 Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580 D L ++Q+LRDE+HR+AI HR + K L + GIG + LL FG+ + Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577 Query: 581 ISRSSPET 588 I ++S + Sbjct: 578 IEKASEQE 585 >gi|312149048|gb|ADQ29119.1| excinuclease ABC, C subunit [Borrelia burgdorferi N40] Length = 580 Score = 363 bits (931), Expect = 6e-98, Method: Composition-based stats. Identities = 163/595 (27%), Positives = 280/595 (47%), Gaps = 32/595 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 ML+ ++LY+GKA NL+ R+KSY N +H+I ++ + +I T +E EALLLE Sbjct: 1 MLNENKKILYIGKAKNLRSRVKSYFLEKN-SHKIKILMKNVKSIEVITTNSEYEALLLEC 59 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N+IK KP +N+ L+D K +P + IT K P ++K R + YFGPF +V +++ Sbjct: 60 NLIKTHKPDYNVKLKDGKGYPMVRIT-HEKYPRIFKTRKIINDKSEYFGPFTNVKKLDQV 118 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194 ++ + +TF +R C + PCL + + +C G C E ++Y + + +AK L+G Sbjct: 119 LDFINKTFKIRKCK----KKSNAPCLYYHMGQCLGVCYKENLEKEYQKELDKAKSILNGN 174 Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM---DCFSLYHNK 251 + +I + A KED+E+AI ++ +L I D ++ + Sbjct: 175 ISEISSQIDIKLKHAIQKEDFETAIKLKEIRNSLIEINQIQIVTKTNNLNIDYVHVHPGE 234 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEE 311 N+ I + G+ F ++ + + + P+ I + + + Sbjct: 235 NVNTIIVLKYRNGKLVERDANFDESICKENELILQFLIQYYTSINMIVPDKIHIFLKDID 294 Query: 312 TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTK 371 T +E + K +I + E KI+E A+ NA S + E L+ Sbjct: 295 TKNVEKLINEIKNTKTEIIYKETEEILKIMEMAISNAELSLREY---ENKSTKALESLKI 351 Query: 372 KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMM 431 + +PK IE +D +H+ G V MV K YR + L+ DD + Sbjct: 352 VLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGMPFKENYRLYKLNSLLKGEIDDFKAI 411 Query: 432 RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENR 491 + V+ RR+S++I N P+++++DGGKGQL+AA +LK L +EN+ Sbjct: 412 KEVISRRYSEIINNN--------------LELPNLILIDGGKGQLNAALSILKGLKIENK 457 Query: 492 ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK 551 + + S+AK + F + + L P L +Q +RDEAHR A ++KRR+K Sbjct: 458 VKVCSLAKKQET-----IFLTTNKKGINLPQGHPALRILQNVRDEAHRKANGFNKKRREK 512 Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 +I+GIG + +L+S GT K I S ++ ++ ++A +I Sbjct: 513 ITL-LYTKIHGIGEKTAQKILKSIGTYKDILPLSENEISEKIKVNVQLAKRIKEF 566 >gi|330509008|ref|YP_004385436.1| excinuclease ABC subunit C [Methanosaeta concilii GP-6] gi|328929816|gb|AEB69618.1| excinuclease ABC, C subunit [Methanosaeta concilii GP-6] Length = 519 Score = 362 bits (930), Expect = 7e-98, Method: Composition-based stats. Identities = 176/558 (31%), Positives = 268/558 (48%), Gaps = 45/558 (8%) Query: 1 MSSEQMPECPGVYQMLD---IAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57 +S + +P PG Y D G ++YVGKA +L+KRI +Y NH+ R +++ I Sbjct: 2 ISLDSLPHLPGCYLFRDSPEEWGNIIYVGKARDLKKRISNYFQKQNHSPRTAALVAAIKG 61 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117 + F VT TEVEALLLE +IK+ +PR+NI L+D + I +T + P + R + Sbjct: 62 VDFIVTNTEVEALLLENTLIKKHQPRYNIKLKDSSRYASIHLT-DEEFPRIRISRKAQ-G 119 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 GS++GPF S +++ F LR+C R R CL + + CSGPC G+I+ Sbjct: 120 PGSFYGPFVSAKERGFVYQIVRKAFGLRTCK----RLPKRACLRYHLCHCSGPCIGKITK 175 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 + Y V AK LSG L + M ++D+E AI RD + AL +Q Sbjct: 176 KDYQARVQRAKSALSGRTAELISSMKEEMTGRANRQDFERAIELRDEINALDRLQERQRV 235 Query: 238 IYNR-MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 NR D + + + + F + + S L F+ Q+Y++ Sbjct: 236 EQNRKYDQDIISYLMDKEIVYLMLFKVYRGTLAGKEEYQFPSSED---FLEEFVVQYYSE 292 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 PE ++ E + LE G KV++TVPKQGEK++++ A N S Sbjct: 293 NEPPEELIAPEPFD--DSLEEFLAHLKGKKVRVTVPKQGEKKELLLLAQKNLEISVFGDR 350 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + L + LP P+ IE +D SH+ G AVG MV K+ YR+F Sbjct: 351 AK-------LVALQEALHLPKKPEVIECFDISHLAGSFAVGSMVQFRSGKPDKSNYRRFK 403 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + V+ DD A + V+ RR+S+L K + L PD++++DGG GQL Sbjct: 404 IRD--VQGGDDFASIAEVVRRRYSRLKKENKEL--------------PDLIVIDGGAGQL 447 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 S+A L+++ V ++ IIS+AK + E + L + + ++Q +RDE Sbjct: 448 SSALKELREMRV--KVPIISLAKREE-----EIYVPGLDGPLDIKKNEKASLYLQEIRDE 500 Query: 537 AHRFAITTHRKRRKKAAY 554 AHRFAI +R RKKA Sbjct: 501 AHRFAIAYNRLLRKKALT 518 >gi|312147825|gb|ADQ30484.1| excinuclease ABC, C subunit [Borrelia burgdorferi JD1] Length = 580 Score = 362 bits (930), Expect = 8e-98, Method: Composition-based stats. Identities = 163/595 (27%), Positives = 279/595 (46%), Gaps = 32/595 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 ML+ ++LY+GKA NL+ R+KSY N +H+I ++ + +I T +E EALLLE Sbjct: 1 MLNENKKILYIGKAKNLRSRVKSYFLEKN-SHKIKILMKNVKSIEVITTNSEYEALLLEC 59 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N+IK KP +N+ L+D K +P + IT K P ++K R + YFGPF +V +++ Sbjct: 60 NLIKTHKPDYNVKLKDGKGYPMVRIT-HEKYPRIFKTRKIINDKSEYFGPFTNVKKLDQV 118 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194 ++ + +TF +R C + PCL + + +C G C E ++Y + + +AK L+G Sbjct: 119 LDFINKTFKIRKCK----KKSNAPCLYYHMGQCLGVCYKENLEKEYQKELDKAKSILNGN 174 Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM---DCFSLYHNK 251 + +I + A KED+E+AI + +L I D ++ + Sbjct: 175 ISEISSQIDIKLKHAIQKEDFETAIKLKKIRNSLIEINQIQIVTKTNNLNIDYVHVHPGE 234 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEE 311 N+ I + G+ F ++ + + + P+ I + + + Sbjct: 235 NVNTIIVLKYRNGKLVERDANFDESICKENELILQFLIQYYTSINMIVPDKIHIFLKDID 294 Query: 312 TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTK 371 T +E + K +I + E KI+E A+ NA S + E L+ Sbjct: 295 TKNVEKLINEIKNTKTEIIYKETEEILKIMEMAISNAELSLREY---ENKSTKALESLKI 351 Query: 372 KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMM 431 + +PK IE +D +H+ G V MV K YR + L+ DD + Sbjct: 352 VLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGMPFKENYRLYKLNSLLKGEIDDFKAI 411 Query: 432 RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENR 491 + V+ RR+S++I N P+++++DGGKGQL+AA +LK L +EN+ Sbjct: 412 KEVISRRYSEIINNN--------------LELPNLILIDGGKGQLNAALSILKGLKIENK 457 Query: 492 ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK 551 + + S+AK + F + + L P L +Q +RDEAHR A ++KRR+K Sbjct: 458 VKVCSLAKKQET-----IFLTTNKKGINLPQGHPALRILQNVRDEAHRKANGFNKKRREK 512 Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 +I+GIG + +L+S GT K I S ++ ++ ++A +I Sbjct: 513 ITL-LYTKIHGIGEKTAQKILKSIGTYKDILPLSENEISEKIKVNVQLAKRIKEF 566 >gi|134045891|ref|YP_001097377.1| excinuclease ABC subunit C [Methanococcus maripaludis C5] gi|132663516|gb|ABO35162.1| Excinuclease ABC subunit C [Methanococcus maripaludis C5] Length = 526 Score = 362 bits (930), Expect = 8e-98, Method: Composition-based stats. Identities = 164/564 (29%), Positives = 268/564 (47%), Gaps = 52/564 (9%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 ++ +P+ G Y + +G V+YVGKA NL+KR+ SY + NH + ++ I + F Sbjct: 2 INISDIPKNSGCYIYKNESGTVIYVGKAKNLKKRVSSYFNKKNHDPKTESLVKSIYEMEF 61 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT EVEAL+LE +IK+ P++NI L+D K++ YI I+ + P + R+ S Sbjct: 62 IVTDNEVEALILENTLIKKYSPKYNIDLKDSKNYAYIYIS-EEDFPRIGILRNKSKKG-K 119 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 ++GPF S + ++ L++TF +RSC + RPCL + IK C+ PC+G+I+S+ Y Sbjct: 120 FYGPFTSAKERDYVLDVLKKTFKIRSCKNMH----KRPCLRYHIKNCTAPCSGDITSKDY 175 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + + +A+ L G ++L +++ M+ + +E A++ R+ + A+ ++ + + Sbjct: 176 LNQIKKAESVLKGHINSLIDELRIEMDNKSKNLQFEEALLIREEINAIEKLKIRQNVKRD 235 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D S+ I G F FL Q+Y++ Sbjct: 236 VKYNEDVISILEKSGKIHIMVFNVLKGTLFDRKYFEFDYTEN-----FFEEFLIQYYSEN 290 Query: 298 PCPENILLSEEAEETSLLE--------ISFFKQYGYKVKITVPKQGEKRKIIEQALINAH 349 P I++SE + ++ G KV +PKQGEK+++++ A+ N Sbjct: 291 EVPSEIIISELPKNIEEESYYNSDAILEYLSQKKGSKVTFKIPKQGEKKQLLDLAIKNLE 350 Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 ++ K + P IE +D SH+ G S V MV K Sbjct: 351 IYVNGNEIK-------VESLKNKLMFDNSPNVIECFDISHLSGTSTVASMVQFRNGKPDK 403 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 YR+F + V DD + V+ RR+S+LI+ L PD++I+ Sbjct: 404 KNYRRFKIKT--VSGIDDFKSISEVVVRRYSKLIEENLEL--------------PDLIII 447 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQLS+A L+KL + +I +ISIAK + E + L + + F Sbjct: 448 DGGKGQLSSAFKELQKLKL--KIPLISIAKREE-----EIYAPGIENPLPIKKNEKASLF 500 Query: 530 IQRLRDEAHRFAITTHRKRRKKAA 553 IQ +RDEAHRFAI +R RKK Sbjct: 501 IQEIRDEAHRFAINYNRLLRKKEL 524 >gi|323948207|gb|EGB44195.1| excinuclease ABC [Escherichia coli H120] Length = 513 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 165/521 (31%), Positives = 272/521 (52%), Gaps = 31/521 (5%) Query: 96 YILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR 155 +I ++ P L HR + +G YFGPF + AV +T+ LQ+ F +R C +SV+R+R Sbjct: 7 FIFLS-GDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR 65 Query: 156 TRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKED 214 +RPCL +QI RC GPC +S E+Y + V + FLSG + + ++ M A+ + Sbjct: 66 SRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLE 125 Query: 215 YESAIIHRDRLAALSHIQNHNDSIY--NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTF 272 +E A RD++ A+ + + +D + + +AC+ F G+ G+ ++ Sbjct: 126 FEEAARIRDQIQAVRRVTEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSY 185 Query: 273 FLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSEEAEETSLLEISFFKQYGYKVK 328 F K + ++++ F+ QFY + P ILL + +LL S + G K+ Sbjct: 186 FPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKIN 245 Query: 329 ITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNS 388 + +G++ + ++ A NA + T KLS + + L LP + R+E +D S Sbjct: 246 VQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDIS 304 Query: 389 HIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEEN 448 H MG V VV NG ++ +YR++N+ + DD A M VL RR+ + I + + Sbjct: 305 HTMGEQTVASCVVFDANGPLRAEYRRYNI--TGITPGDDYAAMNQVLRRRYGKAIDDSK- 361 Query: 449 LNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNV---ENRITIISIAKGPKRSA 505 PDV+++DGGKGQL+ A+ V +L+V +N ++ +AKG R A Sbjct: 362 --------------IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKA 407 Query: 506 GMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGI 563 G+E F +GE L P L+ IQ +RDE+H AI HRK+R K S L+ I G+ Sbjct: 408 GLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGV 467 Query: 564 GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 GP R+++LL+ G ++ + +S E +A + GIS+ +A KI+ Sbjct: 468 GPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIF 508 >gi|298736525|ref|YP_003729051.1| excinuclease ABC subunit C [Helicobacter pylori B8] gi|298355715|emb|CBI66587.1| excinuclease ABC subunit C [Helicobacter pylori B8] Length = 594 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 166/608 (27%), Positives = 276/608 (45%), Gaps = 52/608 (8%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQ 54 + +P GVYQ D ++LY+GKA NL+KRIKSY ++ + RI M+ Q Sbjct: 8 LKNLPNSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIRNNEITPNHRTSLRIQMMVKQ 67 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114 I + + E +AL+LE ++IK+LKP++NILLRDDK++PYI + P R Sbjct: 68 IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127 Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 YFGPF S + ++SL L + + + C+ +QI+RC PC Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCED 183 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 +I+ E+Y + E + + + + +++ M + + +E A+I+RDR+A + I Sbjct: 184 KITKEEYSKIAKECLEMIENKDRLI-KELELKMERLSNNLRFEEALIYRDRIAKIQKIAP 242 Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290 +D F+ Y N A + F G+ + + + + + + + Sbjct: 243 FTCMDLAKLYDLDIFAFYGASNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302 Query: 291 RQFYTDK-PCPENILLSEEAEETSLLE--ISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347 Y P +L +L E QY K+ +++PK+G+K +IE A+ N Sbjct: 303 INHYQSHLPLIPEQILLNACSNEALKELQDFISHQYSKKIALSIPKKGDKLALIEIAMKN 362 Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 A + +IL++ F L +P R+EI+D SH VG MVV N F Sbjct: 363 AQE--IFSQEKISNEDLILEEARSLFKLECMPYRVEIFDTSHHSSSQCVGGMVVYENNAF 420 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 K+ YR+++L D+ M +L RR K P++ Sbjct: 421 QKDSYRRYHLK-----GSDEYTQMSELLTRRALDFAKE----------------PPPNLW 459 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGP------KRSAGMEKFFVKKGEALVLN 521 ++DGG+ QL+ A +LK + + +I+I+K + G + L Sbjct: 460 VIDGGRVQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRAKGGAKDIIHTISNTFKLL 517 Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580 D L ++Q+LRDE+HR+AI HR + K L + GIG + LL FG+ + Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577 Query: 581 ISRSSPET 588 I ++S + Sbjct: 578 IEKASEQE 585 >gi|317182134|dbj|BAJ59918.1| excinuclease ABC subunit C [Helicobacter pylori F57] Length = 594 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 168/608 (27%), Positives = 280/608 (46%), Gaps = 52/608 (8%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQ 54 + + GVYQ D ++LY+GKA NL+KRIKSY ++ + RI M+ Q Sbjct: 8 LKNLSHSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSVRNNEITPNHRASLRIQMMVKQ 67 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114 I + + E +AL+LE ++IK+LKP++NILLRDDK++PYI + P R Sbjct: 68 IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127 Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 YFGPF S + ++SL L + + + C+ +QI+RC PC Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEN 183 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 +I+ E+Y++ E + + + + +++ M + + +E A+I+RDR+A + I Sbjct: 184 KITKEEYLKIAKECLEMIENKDKLI-KELELKMERLSNNLRFEEALIYRDRIAKIQKIAP 242 Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290 +D F+ Y N A + F G+ + + + + + + + Sbjct: 243 FTCMDLAKLYDLDIFAFYSGSNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302 Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347 Y PE ILL+ E L+ QY K+ +++PK+G+K +IE A+ N Sbjct: 303 INHYQSHLPLMPEQILLNTCSNETLKELQDFISHQYSKKIALSIPKKGDKLALIEIAMKN 362 Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 A + +IL++ F L +P R+EI+D SH VG MVV + F Sbjct: 363 AQE--IFSQEKTSNEDLILEEARSLFKLECMPYRVEIFDVSHHANSQCVGGMVVYENHEF 420 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 KN YR+++L ++ M +L RR K P++ Sbjct: 421 QKNSYRRYHLK-----GSNEYTQMSELLTRRALDFAKE----------------PPPNLW 459 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521 ++DGG+ QL+ A +LK + + +I+I+K + G E + L Sbjct: 460 VIDGGRAQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAEDIIHTANDTFKLL 517 Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580 D L ++Q+LRDE+HR+AI HR + K L + GIG + LL FG+ + Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577 Query: 581 ISRSSPET 588 I ++S + Sbjct: 578 IEKASEQE 585 >gi|46199484|ref|YP_005151.1| excinuclease ABC subunit C [Thermus thermophilus HB27] gi|81405651|sp|Q72IF0|UVRC_THET2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|46197110|gb|AAS81524.1| excinuclease ABC subunit C [Thermus thermophilus HB27] Length = 630 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 157/545 (28%), Positives = 250/545 (45%), Gaps = 34/545 (6%) Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117 + F T EVEALLLEAN+IK +P +N+LL+DDK +P++ +T+ P L R Sbjct: 97 LDFIATRDEVEALLLEANLIKAHRPLYNVLLKDDKHYPFLKLTN-EPFPTLLVVRRVEED 155 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 Y+GPF A+ + + R F LR + + R PCL + + RC PC G+ Sbjct: 156 GAKYYGPFPEAGALRRIKTLIDRLFPLRKNSGYPMKRRRYPCLNYSMGRCLAPCVGKADP 215 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA----ALSHIQN 233 E Y E V + + L G L +++ M +A + ++E A RD++ S Q Sbjct: 216 EAYQEVVRQVEAVLEGRVDGLLQELEAKMREAARRLEFERAAEIRDQMEALRAFFSTDQQ 275 Query: 234 HNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 D +D + + LA +Q G+ G + ++ + + + ++ + Sbjct: 276 AFDPEMGDLDFLGMARSGALAVVQLYQVRSGRILGRISRVVEKEEATDEEILWAFLRDHY 335 Query: 294 YTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS-- 351 P P +LL E+ L ++ G KV++ VPK+GEK +++E A NA + Sbjct: 336 LEASPLPPLVLLPFPLEDLESLAELLKRRAGRKVELRVPKKGEKARLLELAERNARLALE 395 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 KL LK LP P R+E YD SH+ G + V + V + + Sbjct: 396 TELKLRERRGEHPALKALQDLLGLPARPWRLEGYDISHLQGQARVFSIAVFEGGRPKRQE 455 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YR+ L DD A M + RR++ +K+ + +DG Sbjct: 456 YRRMRLK----AGNDDYAAMEEGVFRRYTGSLKDLPLPDLLL---------------IDG 496 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 G GQ+ AA L+K + R+ ++ +AKG E +G L L + P L + Sbjct: 497 GVGQVRAAARALEKAGL--RLPLVGLAKGE------EVLVTPEGRELRLPLTHPALQLLI 548 Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 LRDEAH+ + HRKRR + + L I GIG R+RLLL+ +G ++ + + E LA Sbjct: 549 HLRDEAHQNGLRYHRKRRSEELFRVLQGIPGIGEKRRRLLLERYGGLRALKEAPLEELAR 608 Query: 592 IEGIS 596 + G+S Sbjct: 609 LPGMS 613 >gi|217032512|ref|ZP_03438003.1| hypothetical protein HPB128_180g11 [Helicobacter pylori B128] gi|216945790|gb|EEC24413.1| hypothetical protein HPB128_180g11 [Helicobacter pylori B128] Length = 599 Score = 360 bits (925), Expect = 3e-97, Method: Composition-based stats. Identities = 166/608 (27%), Positives = 276/608 (45%), Gaps = 52/608 (8%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQ 54 + +P GVYQ D ++LY+GKA NL+KRIKSY ++ + RI M+ Q Sbjct: 8 LKNLPNSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIRNNEITPNHRTSLRIQMMVKQ 67 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114 I + + E +AL+LE ++IK+LKP++NILLRDDK++PYI + P R Sbjct: 68 IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127 Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 YFGPF S + ++SL L + + + C+ +QI+RC PC Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCED 183 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 +I+ E+Y + E + + + + +++ M + + +E A+I+RDR+A + I Sbjct: 184 KITKEEYSKIAKECLEMIENKDRLI-KELELKMERLSNNLRFEEALIYRDRIAKIQKIAP 242 Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290 +D F+ Y N A + F G+ + + + + + + + Sbjct: 243 FTCMDLAKLYDLDIFAFYGASNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302 Query: 291 RQFYTDK-PCPENILLSEEAEETSLLE--ISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347 Y P +L +L E QY K+ +++PK+G+K +IE A+ N Sbjct: 303 INHYQSHLPLIPEQILLNACSNEALKELQDFISHQYSKKIALSIPKKGDKLALIEIAMKN 362 Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 A + +IL++ F L +P R+EI+D SH VG MVV N F Sbjct: 363 AQE--IFSQEKISNEDLILEEARSLFKLECMPYRVEIFDTSHHSSSQCVGGMVVYENNAF 420 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 K+ YR+++L D+ M +L RR K P++ Sbjct: 421 QKDSYRRYHLK-----GSDEYTQMSELLTRRALDFAKE----------------PPPNLW 459 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521 ++DGG+ QL+ A +LK + + +I+I+K + G + L Sbjct: 460 VIDGGRVQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRAKGGAKDIIHTISNTFKLL 517 Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580 D L ++Q+LRDE+HR+AI HR + K L + GIG + LL FG+ + Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577 Query: 581 ISRSSPET 588 I ++S + Sbjct: 578 IEKASEQE 585 >gi|210135021|ref|YP_002301460.1| excinuclease ABC subunit C [Helicobacter pylori P12] gi|226698352|sp|B6JM52|UVRC_HELP2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|210132989|gb|ACJ07980.1| excinuclease ABC subunit C [Helicobacter pylori P12] Length = 594 Score = 360 bits (924), Expect = 4e-97, Method: Composition-based stats. Identities = 167/608 (27%), Positives = 279/608 (45%), Gaps = 52/608 (8%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQ 54 + +P GVYQ D ++LY+GKA NL+KRIKSY ++ + R+ M+ Q Sbjct: 8 LKNLPNSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIRNNEITPNHRASLRVQMMVKQ 67 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114 I + + E +AL+LE ++IK+LKP++NILLRDDK++PYI + P R Sbjct: 68 IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127 Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 YFGPF S + ++SL L + + + C+ +QI+RC PC Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCED 183 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 +I+ E+Y++ + + + + + +++ M + + K +E A+I+RDR+A + I Sbjct: 184 KITKEEYLKIAKKCLEMIENKDRLI-KELELKMERLSSKLRFEEALIYRDRIAKIQKIAP 242 Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290 +D F+ Y N A + F G+ + + + + + + + Sbjct: 243 FTCMDLAKLYDLDIFAFYGTSNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302 Query: 291 RQFYTDK-PCPENILLSEEAEETSLLE--ISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347 Y P +L +L E QY K+ +++PK+G+K +IE A+ N Sbjct: 303 INHYQSHLPLIPEQILLNACSNETLKELQEFISHQYSKKIALSIPKKGDKLALIEIAMKN 362 Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 A + +IL++ F L +P R+EI+D SH VG MVV N F Sbjct: 363 AQE--IFSQEKTSNEDLILEEARSLFKLECMPYRVEIFDTSHHANSQCVGGMVVYENNAF 420 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 KN YR ++L D+ A M +L RR K P++ Sbjct: 421 QKNSYRLYHLK-----GSDEYAQMSELLTRRALDFAKE----------------PPPNLW 459 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521 ++DGG+ QL+ A +LK + + +I+I+K + G + + L Sbjct: 460 VIDGGRAQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTPSDTFKLL 517 Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKM 580 D L ++Q+LRDE+HR+AI HR + K L + GIG + LL FG+ + Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNLKQIALLKEKGIGEASVKKLLDYFGSFEA 577 Query: 581 ISRSSPET 588 I ++S + Sbjct: 578 IEKASEQE 585 >gi|317180585|dbj|BAJ58371.1| excinuclease ABC subunit C [Helicobacter pylori F32] Length = 594 Score = 359 bits (922), Expect = 6e-97, Method: Composition-based stats. Identities = 167/608 (27%), Positives = 280/608 (46%), Gaps = 52/608 (8%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQ 54 + + GVYQ D ++LY+GKA NL+KRIKSY ++ + RI M+ Q Sbjct: 8 LKNLSHSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSVRNNEITPNHRTSLRIQMMVKQ 67 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114 I + + E +AL+LE ++IK+LKP++NILLRDDK++PYI + P R Sbjct: 68 IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127 Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 YFGPF S + ++SL L + + + C+ +QI+RC PC Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEN 183 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 +I+ E+Y++ E + + + + +++ M + + +E A+I+RDR+A + I Sbjct: 184 KITKEEYLKIAKECLEMIENKDKLI-KELELKMERLSNNLRFEEALIYRDRIAKIQKIAP 242 Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290 +D F+ Y N A + F G+ + + + + + + + Sbjct: 243 FTCMDLAKLYDLDIFAFYSGSNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302 Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347 Y PE ILL+ E L+ QY K+ +++PK+G+K +IE A+ N Sbjct: 303 INHYQSHLPLMPEQILLNACSNETLKELQEFISHQYSKKIALSIPKKGDKLALIEIAMKN 362 Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 A + +IL++ F L +P R+EI+D SH VG MVV + F Sbjct: 363 AQE--IFSQEKTSNEDLILEEARSLFKLECMPYRVEIFDVSHHANSQCVGGMVVYENHEF 420 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 KN YR+++L ++ M +L RR K P++ Sbjct: 421 QKNSYRRYHLK-----GSNEYTQMSELLTRRALDFAKE----------------PPPNLW 459 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521 ++DGG+ QL+ A +LK + + +I+I+K + G + + L Sbjct: 460 VIDGGRAQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTPSDTFKLL 517 Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580 D L ++Q+LRDE+HR+AI HR + K L + GIG + LL FG+ + Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577 Query: 581 ISRSSPET 588 I ++S + Sbjct: 578 IEKASEQE 585 >gi|108563232|ref|YP_627548.1| excinuclease ABC subunit C [Helicobacter pylori HPAG1] gi|119367658|sp|Q1CT48|UVRC_HELPH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|107837005|gb|ABF84874.1| excinuclease ABC subunit C [Helicobacter pylori HPAG1] Length = 594 Score = 359 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 169/608 (27%), Positives = 278/608 (45%), Gaps = 52/608 (8%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQ 54 + + GVYQ D ++LY+GKA NL+KRIKSY ++ + RI M+ Q Sbjct: 8 LKNLSHSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIHNNEITPNHRASLRIQMMVKQ 67 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114 I + + E +AL+LE ++IK+LKP++NILLRDDK++PYI + P R Sbjct: 68 IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127 Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 YFGPF S + ++SL L + + + C+ +QI+RC PC Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEN 183 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 +I+ E+Y + E + + + + +++ M + + +E A+I+RDR+A + I Sbjct: 184 KITKEEYSKIAKECLEMIENRDKLI-KELELKMERLSNNLRFEEALIYRDRIAKIQKIAP 242 Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290 +D F+ Y N A + F G+ + + + + + + + Sbjct: 243 FTCMDLAKLYDLDIFAFYGASNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302 Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347 Y PE ILLS E L+ QY K+ +++PK+G+K +IE A+ N Sbjct: 303 INHYQSHLPLMPEQILLSACSNEALKELQEFISHQYSKKIALSIPKKGDKLALIEIAMKN 362 Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 A +IL++ F L +P R+EI+D SH VG MVV N F Sbjct: 363 AQE--IFSQEKTSDEDLILEEVRSLFNLECVPYRVEIFDTSHHSNSQCVGGMVVYENNAF 420 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 KN YR+++L ++ M +L RR K P++ Sbjct: 421 QKNSYRRYHLK-----GSNEYDQMSELLTRRALDFAKE----------------PPPNLW 459 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521 ++DGG+ QL+ A +LK + + +I+I+K + G + + L Sbjct: 460 VIDGGRAQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTPSDTFKLL 517 Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580 D L ++Q+LRDE+HR+AI HR + K L + GIG + LL FG+ + Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577 Query: 581 ISRSSPET 588 I ++S + Sbjct: 578 IEKASEQE 585 >gi|323253985|gb|EGA37809.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] Length = 475 Score = 359 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 163/484 (33%), Positives = 258/484 (53%), Gaps = 26/484 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI +I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEVLVAQIQHIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYT 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M +A+ +E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTERQFVSNAG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G ++ + +G++ + ++ A NA + K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALITK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP I R+E +D SH MG V VV NG ++ +YR++ Sbjct: 370 LSQQSTITQRLTALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I+ + PDV+++DGGKGQ Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471 Query: 476 LSAA 479 L+ A Sbjct: 472 LAQA 475 >gi|157415509|ref|YP_001482765.1| excinuclease ABC subunit C [Campylobacter jejuni subsp. jejuni 81116] gi|189038032|sp|A8FMV1|UVRC_CAMJ8 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|157386473|gb|ABV52788.1| excinuclease ABC subunit C [Campylobacter jejuni subsp. jejuni 81116] gi|307748151|gb|ADN91421.1| UvrABC system protein C [Campylobacter jejuni subsp. jejuni M1] Length = 600 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 180/625 (28%), Positives = 291/625 (46%), Gaps = 55/625 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54 + +P GVYQ + G++LYVGKA NL+ R+KSY + ++ RI MI + Sbjct: 9 ELKTLPNSAGVYQYFNQEGKLLYVGKAKNLKNRVKSYFAFTPNLHANPRNSLRIQKMIEE 68 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD- 113 ++ F T +E +AL+LE + IK+L P++NILLRDDK++PYI + + + P R Sbjct: 69 TVHLEFITTNSEADALILENSFIKQLHPKYNILLRDDKTYPYIYVDFEEEFPRFEITRKL 128 Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 + YFGPF + +++L + L+ A PC+ +QI RC PC Sbjct: 129 VKKSKIKYFGPF--FKGARELLDALYLYYPLKQKASC-----KSPCIFYQISRCLAPCDK 181 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 IS EKY+E + EA L + + + + + M E+YE A RD++ + ++ Sbjct: 182 RISREKYLEILDEAMHALLNPSILI-KNLEKQMLVLAQNENYEEAAKVRDQIVTIKDLEV 240 Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNR--GTCTFFLKTDSESTNAQILSY 288 + + F+L ++ G+ + +K D + +I Sbjct: 241 KVEIDIAKLEDFEVFALAFENSMLSTLRFVVQNGKIISVNSKITPIKNDIQWDKNEIYKQ 300 Query: 289 FLRQFYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 + + ++ I + EE E+ LLE +++ K+ I +PK GEKR+I + A Sbjct: 301 LILENFSMDIPLLANVIYVYEEFEDRMLLEEILSQRFDKKISIKIPKIGEKRRICDLAFQ 360 Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 NA + + I K+ F L ++P IEI+DNSH+ G + VG MV N Sbjct: 361 NALLNIE--KEQKNHDFTIQKELKSYFELENLPNDIEIFDNSHLQGVANVGAMVTYSANS 418 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 + K++YRKF+L ++D MR VL R + ++ PD+ Sbjct: 419 WDKSKYRKFHLK-----HKNDYDQMREVLMR----------------RALDFDKIPPPDL 457 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNM 522 ++DGGK L A+ ++ I IS AK + G L++ Sbjct: 458 WLIDGGKALLDLAKEIIVSSGANVDILAISKEKIDAKAHRAKGGARDKIHSLKGEFSLSI 517 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--SPLDEINGIGPLRKRLLLQSFGTVKM 580 D L F+Q+LRDEAHRFAI+ H+ +KK S L + G+ + LL +G + Sbjct: 518 NDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLNSSKLVNL-GLSSGVIQKLLAYYGNFES 576 Query: 581 ISRSSPETLASIEGISKKIACKIYN 605 I ++ + LA + G KK+A KI Sbjct: 577 IYKADFKDLAMLVG--KKVAQKIKE 599 >gi|308063390|gb|ADO05277.1| excinuclease ABC subunit C [Helicobacter pylori Sat464] Length = 594 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 168/608 (27%), Positives = 281/608 (46%), Gaps = 52/608 (8%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH--------THRITHMISQ 54 + + GVYQ D ++LY+GKA NL+KRIKSY +N+ + RI M+ Q Sbjct: 8 LKNLSHSSGVYQYFDKNHQLLYIGKAKNLKKRIKSYFSIHNNEITPNYRASLRIQMMVKQ 67 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114 I + + E +AL+LE ++IK+LKP++NILLRDDK++PYI + P R Sbjct: 68 IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127 Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 YFGPF S + ++SL L + + + C+ +QI+RC PC Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEN 183 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 +I+ E+Y++ E + + + + +++ M + + +E A+I+RDR+A + I Sbjct: 184 KITKEEYLKIAKECLEMIENKDKLI-KELELKMERLSSNLRFEEALIYRDRIAKIQKIAP 242 Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290 +D F+ Y N A + F G+ + + + + + + + Sbjct: 243 FTCMDLAKLYDLDIFAFYGKGNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302 Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347 Y PE ILL+ E L+ QY K+ +++PK+G+K +IE A+ N Sbjct: 303 INHYQSHLPLMPEQILLNACSNETLKELQEFISHQYSKKIALSIPKKGDKLALIEIAMKN 362 Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 A + +IL++ F L +P R+EI+D SH VG MVV + F Sbjct: 363 AQE--IFSQEKTSNEDLILEEAQSLFKLECMPYRVEIFDTSHHANSQCVGGMVVYENHEF 420 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 KN YR+++L ++ M +L RR K P++ Sbjct: 421 QKNSYRRYHLK-----GSNEYTQMSELLTRRALDFAKE----------------PPPNLW 459 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521 ++DGG+ QL+ A +LK + + +I+I+K + G + + L Sbjct: 460 VIDGGRAQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTASDTFKLL 517 Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580 D L ++Q+LRDE+HR+AI HR + K L + GIG + LL FG+ + Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577 Query: 581 ISRSSPET 588 I ++S + Sbjct: 578 IEKASEQE 585 >gi|283954808|ref|ZP_06372324.1| LOW QUALITY PROTEIN: excinuclease ABC subunit C [Campylobacter jejuni subsp. jejuni 414] gi|283793648|gb|EFC32401.1| LOW QUALITY PROTEIN: excinuclease ABC subunit C [Campylobacter jejuni subsp. jejuni 414] Length = 600 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 180/625 (28%), Positives = 285/625 (45%), Gaps = 55/625 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54 + +P GVYQ + G++LYVGKA NL+ R+KSY + ++ RI MI + Sbjct: 9 ELKTLPNSAGVYQYFNQEGKLLYVGKAKNLKNRVKSYFAFTPNLHANPRNSLRIQKMIEE 68 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD- 113 ++ F T +EV+AL+LE + IK+L P++NILLRDDK++PYI + + P R Sbjct: 69 TVHLEFITTNSEVDALILENSFIKQLHPKYNILLRDDKTYPYIYVNLDEEFPRFEITRKL 128 Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 + YFGPF + +++L + L+ A PC+ +QI RC PC Sbjct: 129 VKKSKIKYFGPF--FKGARELLDALYLYYPLKQKASC-----KTPCIFYQISRCLAPCDK 181 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 IS EKY E + EA L + + + + M E+YE A RD++ + ++ Sbjct: 182 RISKEKYREILDEAIYALLNPGILV-KNLEKQMLILAQNENYEEAAKIRDQITTIKDLEV 240 Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNR--GTCTFFLKTDSESTNAQILSY 288 + + F+L ++ G+ + +K D + +I Sbjct: 241 KVEIDIAKLEDFEVFALAFENSILSTLRFVVQNGKIISVNSKIIPVKNDIQWDKNEIYKQ 300 Query: 289 FLRQFYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 + + ++ I + EE E+ LLE +++ K+ I +PK GEKRKI + A Sbjct: 301 LILENFSTDIPLLASFIYVYEEFEDRVLLEKILSQRFDKKISIKIPKIGEKRKICDLAFQ 360 Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 NA + + + K+ F L ++P +EI+DNSH+ G + VG MV N Sbjct: 361 NALLNIE--KEQKNHDFNMQKELKSYFELENLPNYVEIFDNSHLQGVANVGVMVAYRVNS 418 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 + K +YRKF+L +D MR VL R + ++ PD+ Sbjct: 419 WDKLKYRKFHLKYK-----NDYDQMREVLTR----------------RALDFDKMPPPDL 457 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNM 522 ++DGG+ L A+ ++ I IS AK + G + L+ Sbjct: 458 WLIDGGRALLDLAKEIIASSGANVDILAISKEKIDAKAYRAKGGAKDKIHSLKGEFSLST 517 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKA--AYSPLDEINGIGPLRKRLLLQSFGTVKM 580 D L F+Q+LRDEAHRFAI+ HR +KK S L +GI + LL +G + Sbjct: 518 NDKKLQFLQKLRDEAHRFAISFHRNTKKKQDLTSSKLIN-SGISAGVIQKLLAFYGNFES 576 Query: 581 ISRSSPETLASIEGISKKIACKIYN 605 I ++ + L + G KK A KI Sbjct: 577 IYKADFKELMMLVG--KKAAQKIKE 599 >gi|317178818|dbj|BAJ56606.1| excinuclease ABC subunit C [Helicobacter pylori F30] Length = 594 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 167/608 (27%), Positives = 282/608 (46%), Gaps = 52/608 (8%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH--------THRITHMISQ 54 + + GVYQ D ++LY+GKA NL+KRI+SY +N+ + RI M+ Q Sbjct: 8 LKNLSHSSGVYQYFDKNRQLLYIGKAKNLKKRIRSYFSIHNNEITPNYRASLRIQMMVKQ 67 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114 I + + E +AL+LE ++IK+LKP++NILLRDDK++PYI + P R Sbjct: 68 IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127 Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 YFGPF S + ++SL L + + + C+ +QI+RC PC Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEN 183 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 +I+ E+Y++ E + + + + +++ M + + +E A+I+RDR+A + I Sbjct: 184 KITKEEYLKIAKECLEMIENKDKLI-KELELKMERLSNNLRFEEALIYRDRIAKIQKIAP 242 Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290 +D F+ Y N A + F G+ + + + + + + + Sbjct: 243 FTCMDLAKLYDLDIFAFYSGSNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302 Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347 Y PE ILL+ E L+ QY K+ +++PK+G+K +IE A+ N Sbjct: 303 INHYQSHLPLMPEQILLNACSNETLKELQEFISHQYSKKIALSIPKKGDKLALIEIAMKN 362 Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 A + + +IL++ F L +P R+EI+D SH VG MVV + F Sbjct: 363 AQK--IFSQEKTSNEDLILEEAQSLFKLECMPYRVEIFDVSHHANSQCVGGMVVYENHEF 420 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 KN YR+++L ++ M +L RR K P++ Sbjct: 421 QKNSYRRYHLK-----GSNEYTQMSELLTRRALDFAKE----------------PPPNLW 459 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521 ++DGG+ QL+ A +LK + + +I+I+K + G + + L Sbjct: 460 VIDGGRAQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTARDTFKLL 517 Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580 D L ++Q+LRDE+HR+AI HR + K L + GIG + LL FG+ + Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577 Query: 581 ISRSSPET 588 I ++S + Sbjct: 578 IEKASEQE 585 >gi|154149057|ref|YP_001406225.1| excinuclease ABC subunit C [Campylobacter hominis ATCC BAA-381] gi|153805066|gb|ABS52073.1| excinuclease ABC, C subunit [Campylobacter hominis ATCC BAA-381] Length = 607 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 182/635 (28%), Positives = 291/635 (45%), Gaps = 65/635 (10%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH--------------THR 47 + +P+ GVY+ D G +LYVGKA L+ R++SY + + R Sbjct: 5 EIKSLPKQSGVYEYFDKDGHLLYVGKAKILKNRVRSYFSFTSKNSAANGSLPSNPKVSPR 64 Query: 48 ITHMISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPA 107 I MIS+ ++ + VT +E +AL+LE + IK+LKP++NILLRDDK++PYI I K P Sbjct: 65 IAKMISEAVHLEYIVTPSESDALILENSFIKQLKPKYNILLRDDKTYPYIYIDLSEKFPR 124 Query: 108 LYKHRDSSTIQG-SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKR 166 R YFGP+ + + +L F L + + C+ +QIKR Sbjct: 125 FKITRKVIKGTNIKYFGPY--FKGSREILEALYYQFALVQ--KNGCLKSKKECIFYQIKR 180 Query: 167 CSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA 226 C PCTG+ISSE+Y++ V+E+ KF+ L + M L E++E A RD + Sbjct: 181 CKAPCTGKISSEEYVKIVNESIKFIKNPELLLPN-LEILMQNYALGENFEEAAKIRDMIN 239 Query: 227 ALSHIQNHNDS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS---ES 280 + I+ + + ++ NL + G+ G+ + + + Sbjct: 240 TIKDIEVRVEVDLARLEDFEVIAINSYANLVAVVRFSVRDGKISGSKCNIINFKNLTKDD 299 Query: 281 TNAQILSYFLRQFYTDKPCPENILLSE-EAEETSLLEISFFKQYGYKVKITVPKQGEKRK 339 N L + P N + + + E+ L+ ++G K +I PK GEKR+ Sbjct: 300 FNDIYRQAILEIYPEGAPVGANKIYTYDDFEDKELVAKILENKHGRKFQINSPKIGEKRR 359 Query: 340 IIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCM 399 I E A N + + L + L + F L ++P IEI+DNSH+ G + VG M Sbjct: 360 ICEIAFKNCEINIQKHL--KTHDYGFLSELKDYFDLQNLPVNIEIFDNSHMFGNTPVGAM 417 Query: 400 VVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS 459 V + F K YR +L N +D M L R + K Sbjct: 418 VCFKDGNFYKENYRHAHLKSN-----NDYDQMIEFLTLRVKRFDK--------------- 457 Query: 460 FPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAK-----GPKRSAG--MEKFFV 512 S PD+ ++DGGK L A +LK + V + +I+I+K R+ G +K Sbjct: 458 -ISPPDLWVIDGGKALLDLAGQILKSVGV--NVDVIAISKEKIDAKAHRAKGAAKDKIVT 514 Query: 513 KKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRK-RRKKAAYSP-LDEINGIGPLRKRL 570 G L+ D L F Q+LRDEAHRFAI+ H+K +RK+ S L ++ G+ + Sbjct: 515 ING-TFSLSTYDKKLQFFQKLRDEAHRFAISFHQKSKRKQDLTSSKLLKM-GVSAGSLKK 572 Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ FG+ + I + + + ++ +KK A ++ Sbjct: 573 LIDFFGSFEKIYEADYDEIKNLT--NKKTAEILFK 605 >gi|297380024|gb|ADI34911.1| excinuclease ABC, C subunit [Helicobacter pylori v225d] Length = 594 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 167/608 (27%), Positives = 278/608 (45%), Gaps = 52/608 (8%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH--------THRITHMISQ 54 + + GVYQ D ++LY+GKA NL+KRIKSY N+ + RI M+ Q Sbjct: 8 LKNLSHSSGVYQYFDKNHQLLYIGKAKNLKKRIKSYFSVRNNEITPNYRASLRIQMMVKQ 67 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114 I + + E +AL+LE ++IK+LKP++NILLRDDK++PYI + P R Sbjct: 68 IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127 Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 YFGPF S + ++SL L + + + C+ +QI+RC PC Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEN 183 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 +I+ E+Y++ E + + + + + + M + + +E A+I+RDR+A + I Sbjct: 184 KITKEEYLKIAKECLEMIENKDKLI-KALELKMERLSNNLRFEEALIYRDRIAKIQKIAP 242 Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290 +D F+ N A + F G+ + + + + + + + Sbjct: 243 FTCMDLAKLYDLDIFAFCGKGNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302 Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347 Y PE ILL+ E L+ QY K+ +++PK+G+K +IE A+ N Sbjct: 303 INHYQSHLPLMPEQILLNACSNETLKELQEFISHQYSKKIALSIPKKGDKFALIEIAMKN 362 Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 A + +IL++ F L +P R+EI+D SH VG MVV + F Sbjct: 363 AQE--IFSQEKTSNEDLILEEARSLFKLECMPYRVEIFDVSHHANSQCVGGMVVYENHEF 420 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 KN YR+++L ++ M +L RR K P++ Sbjct: 421 QKNSYRRYHLK-----GSNEYTQMSELLTRRALDFAKE----------------PPPNLW 459 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521 ++DGG+ QL+ A +LK + + +I+I+K + G + + L Sbjct: 460 VIDGGRAQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTASDTFKLL 517 Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580 D L ++Q+LRDE+HR+AI HR + K L + GIG + LL FG+ + Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577 Query: 581 ISRSSPET 588 I ++S + Sbjct: 578 IEKASEQE 585 >gi|261837949|gb|ACX97715.1| excinuclease ABC subunit C [Helicobacter pylori 51] Length = 594 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 169/608 (27%), Positives = 282/608 (46%), Gaps = 52/608 (8%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQ 54 + + GVYQ D ++LY+GKA NL+KRIKSY ++ + RI M+ Q Sbjct: 8 LKNLSHSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSVRNNEITPNHRASLRIQMMVKQ 67 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114 I + + E +AL+LE ++IK+LKP++NILLRDDK++PYI + P R Sbjct: 68 IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127 Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 YFGPF S + ++SL L + + + C+ +QI+RC PC Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEN 183 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 +I+ E+Y++ E + + + + +++A M + + +E A+I+RDR+A + I Sbjct: 184 KITKEEYLKIAKECLEMIENKDKLI-KELALKMERLSNNLRFEEALIYRDRIAKIQKIAP 242 Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290 +D F+ Y N A + F G+ + + + + + + + Sbjct: 243 FTCMDLAKLYDLDIFAFYSGSNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302 Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347 Y PE ILL+ E L+ QY K+ +++PK+G+K +IE A+ N Sbjct: 303 INHYQSHLPLMPEQILLNACSNETLKELQDFISHQYSKKIALSIPKKGDKLALIEIAMKN 362 Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 A + +IL++ F L +P R+EI+D SH VG MVV +GF Sbjct: 363 AQE--IFSQEKTSNEDLILEEARSLFKLECMPYRVEIFDVSHHANSQCVGGMVVYENHGF 420 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 KN YR+++L ++ M +L RR K P++ Sbjct: 421 QKNSYRRYHLK-----GSNEYTQMSELLTRRALDFAKE----------------PPPNLW 459 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521 ++DGG+ QL+ A +LK + + +I+I+K + G + + L Sbjct: 460 VIDGGRAQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTARDTFKLL 517 Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580 D L ++Q+LRDE+HR+AI HR + K L + GIG + LL FG+ + Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577 Query: 581 ISRSSPET 588 I ++S + Sbjct: 578 IEKASEQE 585 >gi|261839360|gb|ACX99125.1| excinuclease ABC subunit C [Helicobacter pylori 52] Length = 594 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 167/608 (27%), Positives = 280/608 (46%), Gaps = 52/608 (8%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQ 54 + + GVYQ D ++LY+GKA NL+KRIKSY ++ + RI M+ Q Sbjct: 8 LKNLSHSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIHNNEITPNHRASLRIQMMVKQ 67 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114 I + + E +AL+LE ++IK+LKP++NILLRDDK++PYI + P R Sbjct: 68 IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127 Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 YFGPF S + ++SL L + + + C+ +QI+RC PC Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEN 183 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 +I+ E+Y++ E + + + + +++ M + + +E A+I+RDR+A + I Sbjct: 184 KITKEEYLKIAKECLEMIENKDKLI-KELELKMERLSNNLRFEEALIYRDRIAKIQKIAP 242 Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290 +D F+ Y N A + F G+ + + + + + + + Sbjct: 243 FTCMDLAKLYDLDIFAFYSGSNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302 Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347 Y PE ILL+ E L+ QY K+ +++PK+G+K +IE A+ N Sbjct: 303 INHYQSHLPLMPEQILLNACSNETLKELQEFISHQYSKKIALSIPKKGDKLALIEIAMKN 362 Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 A + +IL++ F L +P R+EI+D SH VG MVV + F Sbjct: 363 AQE--IFSQEKTSNEDLILEEARSLFKLECMPYRVEIFDVSHHANSQCVGGMVVYENHEF 420 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 KN YR+++L ++ M +L RR K P++ Sbjct: 421 QKNSYRRYHLK-----GSNEYTQMSELLTRRALDFAKE----------------PPPNLW 459 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521 ++DGG+ QL+ A +LK + + +I+I+K + G + + L Sbjct: 460 VIDGGRAQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTASDTFKLL 517 Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580 D L ++Q+LRDE+HR+AI HR + K L + GIG + LL FG+ + Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577 Query: 581 ISRSSPET 588 I ++S + Sbjct: 578 IEKASEQE 585 >gi|291276903|ref|YP_003516675.1| excinuclease ABC subunit C [Helicobacter mustelae 12198] gi|290964097|emb|CBG39941.1| excinuclease ABC subunit C [Helicobacter mustelae 12198] Length = 597 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 180/616 (29%), Positives = 291/616 (47%), Gaps = 62/616 (10%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQ 54 + +P GVYQ D G++LYVGKA N++KR+KSY + + RI M+SQ Sbjct: 7 LQNLPTTFGVYQYFDANGKLLYVGKAKNIKKRVKSYFRIFENTLIPNPTASTRIKLMLSQ 66 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114 +++I V +E +ALLLE +MIK+LKP++NILLRDDK++PYI+I + P++ R Sbjct: 67 VSHIHTMVVSSEQDALLLENSMIKQLKPKYNILLRDDKTYPYIVIDLEEDFPSISITRKI 126 Query: 115 STIQG-SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 + YFGP+ S ++SLQ L V + CL +QI++C PC Sbjct: 127 QDQKSLRYFGPYPSGG--RDILDSLQDLLPLVQKKSCV--KGKKACLFYQIQKCPAPCEN 182 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 +IS + Y + +A K L L I + M + +E A I+++RL + + + Sbjct: 183 KISKDAYALTIKQAIKILQNKKLLL-SLIEQKMLSLSQNLLFEEAQIYKNRLQKIKELSS 241 Query: 234 HNDSIYNR-------MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQIL 286 ++ + + N +A + F G+ + +++D + + Sbjct: 242 FSEISAQKPYDLDIISAIKEPHKNGYIAILVKLFMRNGKIIAADSKRVRSDYDIDIQSLF 301 Query: 287 SYFLRQFYTDKPC--PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344 + +L Y K P+ IL+SEE E+ L+ G K+ I+VPK G K+ +I Sbjct: 302 TQYLLSHYKHKLPLLPQAILVSEELEDVQGLQNFLQDTQGRKIPISVPKSGFKKNLIHIG 361 Query: 345 LINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGE 404 + NA Q+ + S IL + FAL P RIE++D SH VG M+V Sbjct: 362 IKNARELLRQEANLCASD--ILIQIKESFALSQTPFRIEVFDTSHHAMSFNVGGMIVYDM 419 Query: 405 NGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWP 464 F + YR +NL D+ A MR +L R +K P Sbjct: 420 QNFDPSSYRHYNLQSK-----DEYAQMREMLLHRIESFVK----------------SPPP 458 Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAG-----MEKFFVKKGEALV 519 ++ ++DGG+ QL+ AQ +L+ + I IS K ++ ++ + K+ + L Sbjct: 459 NLWVIDGGRAQLNLAQNLLESAGYDIDILAISKEKRDHKAYRAKGYARDRIYTKERD-LR 517 Query: 520 LNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLR---KRLLLQSFG 576 L+ D L F+Q+LRDE+HRFAI HR ++ K L P ++ LLQ FG Sbjct: 518 LDPSDKRLQFLQKLRDESHRFAIKFHRSQKTKNLTKNL-------PYTTAEQKRLLQYFG 570 Query: 577 TVKMISRSSPETLASI 592 + +S + ++ + Sbjct: 571 DFAKLQSASAQEISQV 586 >gi|315586513|gb|ADU40894.1| excision endonuclease subunit UvrC [Helicobacter pylori 35A] Length = 594 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 168/608 (27%), Positives = 278/608 (45%), Gaps = 52/608 (8%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH--------THRITHMISQ 54 + + GVYQ D ++LY+GKA NL+KRIKSY N+ + RI M+ Q Sbjct: 8 LKNLSHSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSVRNNEITPNYRASLRIQMMVKQ 67 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114 I + + E +AL+LE ++IK+LKP++NILLRDDK++PYI + P R Sbjct: 68 IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127 Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 YFGPF S + ++SL L + + + C+ +QI+RC PC Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEN 183 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 +I+ E+Y + E + + + + +++ M + + +E A+I+RDR+A + I Sbjct: 184 KITKEEYSKIAKECLEMIENKDKLI-KELELKMERLSNNLRFEEALIYRDRIAKIQKIAP 242 Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290 +D F+ Y N A + F G+ + + + + + + + Sbjct: 243 FTCMDLAKLYDLDIFAFYSGSNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302 Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347 Y PE ILL+ E L+ QY K+ +++PK+G+K +IE A+ N Sbjct: 303 INHYQSHLPLMPEQILLNTCSNETLKELQDFISHQYSKKIALSIPKKGDKLALIEIAMKN 362 Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 A + +IL++ F L +P R+EI+D SH VG MVV + F Sbjct: 363 AQE--IFSQEKTSNEDLILEEARSLFKLECMPYRVEIFDTSHHANSQCVGGMVVYENHEF 420 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 KN YR ++L ++ M +L RR K P++ Sbjct: 421 QKNSYRHYHLK-----GSNEYTQMSELLTRRALDFAKE----------------PPPNLW 459 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521 ++DGG+ QL+ A +LK + + +I+I+K + G + + L Sbjct: 460 VIDGGRAQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTANDTFKLL 517 Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580 D L ++Q+LRDE+HR+AI HR + K L + GIG + LL FG+ + Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577 Query: 581 ISRSSPET 588 I ++S + Sbjct: 578 IEKASEQE 585 >gi|188527333|ref|YP_001910020.1| excinuclease ABC subunit C [Helicobacter pylori Shi470] gi|238691918|sp|B2UT08|UVRC_HELPS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|188143573|gb|ACD47990.1| excinuclease ABC subunit C [Helicobacter pylori Shi470] Length = 594 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 168/608 (27%), Positives = 280/608 (46%), Gaps = 52/608 (8%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH--------THRITHMISQ 54 + + GVYQ D ++LY+GKA NL+KRIKSY N+ + RI M+ Q Sbjct: 8 LKNLSHSSGVYQYFDKNHQLLYIGKAKNLKKRIKSYFSVRNNEITPNYRTSLRIQMMVKQ 67 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114 I + + E +AL+LE ++IK+LKP++NILLRDDK++PYI + P R Sbjct: 68 IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127 Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 YFGPF S + ++SL L + + + C+ +QI+RC PC Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEN 183 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 +I+ E+Y++ E + + + + +++ M + + +E A+I+RDR+A + I Sbjct: 184 KITKEEYLKIAKECLEMIENKDKLI-KELELKMERLSNNLRFEEALIYRDRIAKIQKIAP 242 Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290 +D F+ Y N A + F G+ + + + + + + + Sbjct: 243 FTCMDLAKLYDLDIFAFYGKGNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302 Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347 Y PE ILL+ E L+ QY K+ +++PK+G+K +IE A+ N Sbjct: 303 INHYQSHLPLMPEQILLNACSNETLKELQEFISHQYSKKIALSIPKKGDKLALIEIAMKN 362 Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 A + +IL++ F L +P R+EI+D SH VG MVV + F Sbjct: 363 AQE--IFSQEKTSNEDLILEEARSLFKLECMPYRVEIFDTSHHANSQCVGGMVVYENHEF 420 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 KN YR+++L ++ M +L RR K P++ Sbjct: 421 QKNSYRRYHLK-----GSNEYTQMSELLTRRALDFAKE----------------PPPNLW 459 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521 ++DGG+ QL+ A +LK + + +I+I+K + G + + L Sbjct: 460 VIDGGRVQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTASDTFKLL 517 Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580 D L ++Q+LRDE+HR+AI HR + K L + GIG + LL FG+ + Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577 Query: 581 ISRSSPET 588 I ++S + Sbjct: 578 IEKASEQE 585 >gi|111115286|ref|YP_709904.1| excinuclease ABC, subunit C [Borrelia afzelii PKo] gi|110890560|gb|ABH01728.1| excinuclease ABC, subunit C [Borrelia afzelii PKo] Length = 575 Score = 357 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 164/595 (27%), Positives = 279/595 (46%), Gaps = 32/595 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 ML+ ++LY+GKA NL+ RIKSY +H+I ++ + +I T +E EALLLE Sbjct: 1 MLNENKKILYIGKAKNLRSRIKSYFLEK-KSHKIKILMKNVKSIEVITTNSEYEALLLEC 59 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N+IK KP +N+ L+D K +P + IT K P ++K R Q YFGPF +V +++ Sbjct: 60 NLIKTHKPDYNVKLKDGKGYPMVRIT-HEKYPRIFKTRKIINDQSEYFGPFTNVKKLDQV 118 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194 ++ + +TF +R C + PCL + + +C G C E ++Y E + +AK L+G Sbjct: 119 LDFINKTFKIRKCK----KKSNTPCLYYHMGQCLGVCFKENLEKEYQEELDKAKSILNGN 174 Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM---DCFSLYHNK 251 + +I + A KED+E+AI ++ ++L I D ++ + Sbjct: 175 ISEILSQIDIKLKLAVQKEDFENAIKLKEIKSSLIEINQIQIVTKTNNLNTDYVYVHPGE 234 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEE 311 N+ I + G+ F ++ + + + P+ I + + + Sbjct: 235 NVNTIIVLKYRNGKLVERDANFDESICKKNELILQFLIQYYTSINMIVPDKIHIFLKDID 294 Query: 312 TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTK 371 T E + K +I + E KI+E A+ NA S + E + L+ Sbjct: 295 TKNAEKLINEIKNTKTEIIYKETEEILKIMEMAISNAELSLREY---ENKNNKALESLKI 351 Query: 372 KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMM 431 + +PK IE +D +H+ G V MV K Y+ + L+ DD + Sbjct: 352 FLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGIPFKENYKLYKLNSLLKGEIDDVKAI 411 Query: 432 RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENR 491 + V+ RR+S++I P+++++DGGKGQL+AA +LK L +EN+ Sbjct: 412 KEVILRRYSEIIN--------------KNLELPNLILIDGGKGQLNAAFSILKGLKIENK 457 Query: 492 ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK 551 + + S+AK + F + + L P L +Q +RDEAHR A ++KRR+K Sbjct: 458 VKVCSLAKKHET-----IFLTTNKKGINLPQGHPALRILQNVRDEAHRKANGFNKKRREK 512 Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 +INGIG + +L+S GT K I S ++ ++ ++A +I Sbjct: 513 ITL-LYTKINGIGEKTAQKILKSIGTYKDILPLSENEISEKIKVNIRLAKRIKEF 566 >gi|308062141|gb|ADO04029.1| excinuclease ABC subunit C [Helicobacter pylori Cuz20] Length = 594 Score = 356 bits (913), Expect = 7e-96, Method: Composition-based stats. Identities = 168/608 (27%), Positives = 280/608 (46%), Gaps = 52/608 (8%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH--------THRITHMISQ 54 + + GVYQ D ++LY+GKA NL+KRIKSY N+ + RI M+ Q Sbjct: 8 LKNLSHSSGVYQYFDKNCQLLYIGKAKNLKKRIKSYFSVRNNEITPNYRTSLRIQMMVKQ 67 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114 I + + E +AL+LE ++IK+LKP++NILLRDDK++PYI + P R Sbjct: 68 IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127 Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 YFGPF S + ++SL L + + + C+ +QI+RC PC Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEN 183 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 +I+ E+Y++ E + + + + +++ M + + +E A+I+RDR+A + I Sbjct: 184 KITKEEYLKIAKECLEMIENKDKLI-KELELKMERLSNNLRFEEALIYRDRIAKIQKISP 242 Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290 +D F+ Y N A + F G+ + + + + + + + Sbjct: 243 FTCMDLAKLYDLDIFAFYGKGNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302 Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347 Y PE ILL+ E L+ QY K+ +++PK+G+K +IE A+ N Sbjct: 303 INHYQSHLPLMPEQILLNACSNETLKELQEFISHQYSKKIALSIPKKGDKLALIEIAMKN 362 Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 A + +IL++ F L +P R+EI+D SH VG MVV + F Sbjct: 363 AQE--IFSQEKTSNEDLILEEARSLFKLECMPYRVEIFDTSHHANSQCVGGMVVYENHEF 420 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 KN YR+++L ++ M +L RR K P++ Sbjct: 421 QKNSYRRYHLK-----GSNEYTQMSELLTRRALDFAKE----------------PPPNLW 459 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521 ++DGG+ QL+ A +LK + + +I+I+K + G + + L Sbjct: 460 VIDGGRVQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTPSDTFKLL 517 Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580 D L ++Q+LRDE+HR+AI HR + K L + GIG + LL FG+ + Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGESSVKKLLDYFGSFEA 577 Query: 581 ISRSSPET 588 I ++S + Sbjct: 578 IEKASEQE 585 >gi|50364916|ref|YP_053341.1| repair endonuclease subunit C [Mesoplasma florum L1] gi|81391981|sp|Q6F216|UVRC_MESFL RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|50363472|gb|AAT75457.1| repair endonuclease subunit C [Mesoplasma florum L1] Length = 588 Score = 356 bits (913), Expect = 7e-96, Method: Composition-based stats. Identities = 153/609 (25%), Positives = 272/609 (44%), Gaps = 48/609 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 +P PG Y L+ V+YVGKA NL+KR+ SY + T ++ +I ++ + Sbjct: 6 KVSNLPSKPGCYLYLNKDKHVIYVGKAKNLKKRVSSYF-DRAQNLKTTRLVREIADLEYF 64 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V E E+LLLE N+IK+ +P++N+LL DDK++PYI+IT+ K P R Sbjct: 65 VVSNEKESLLLEENLIKKYRPKYNVLLNDDKAYPYIIITN-EKDPTYKYVRKLDKKAFRS 123 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP +T+ +LQR F LR C ++ +PCL + I +CSG C E++ E Y Sbjct: 124 FGPLPIGSNARETLITLQRLFPLRRCKGNL----GKPCLHYFIGQCSGACFKEVNKEYYQ 179 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 E + F G + +K + M++A +E A ++++ +L + + Sbjct: 180 EQIKRVDNFFKGNINEVKTLLTNQMHKAAENLQFEEAQRIKEQIISLDFTTTKQNVEFKS 239 Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 +D S + I T F+ G+ ++ E ++ F+ Q Y Sbjct: 240 QTDVDVISYFIEDEKIAIVTLFYRSGKLLFKD-EHIQLYFEQDITDLIDSFMSQIYDKNI 298 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P+ I++ E E L E T P + +++ I + A NA + + + Sbjct: 299 LPDKIIVDNEVELFDLNEKYKS-------ISTHPIKEDEKIIYKLATENAQEAIRKSKIS 351 Query: 359 EI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + +L + +K L P R+E++D S+I VG VV +N++RK Sbjct: 352 TTINIGNENELLLELQEKANLQKEPYRLEMFDISNIGNEFIVGSCVVYINGKPARNEFRK 411 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 +N+ D ++ +L RRF + + + L PD++I+DGG Sbjct: 412 YNIESKFT---SDYDRLKEMLYRRFQKALIEKRML--------------PDLIIMDGGII 454 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q+ AA+ ++ L + I +I + K + E +++ + + ++ ++ Sbjct: 455 QIHAAKEIINALGLS-EIQVIGLVKDEHHNTSF--LIDTNEEQVIIKDKPKLFNWLSSIQ 511 Query: 535 ---DEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 DE +A + RK++ + S L++I G+G R + L + F T+ I + E L Sbjct: 512 VRVDE---YAKSGFRKKQNNSFLKSDLEQIEGLGKKRIQDLFKKFNTINEIESADQEELF 568 Query: 591 SIEGISKKI 599 I K + Sbjct: 569 KILKNKKAL 577 >gi|308182980|ref|YP_003927107.1| excinuclease ABC subunit C [Helicobacter pylori PeCan4] gi|308065165|gb|ADO07057.1| excinuclease ABC subunit C [Helicobacter pylori PeCan4] Length = 594 Score = 356 bits (913), Expect = 8e-96, Method: Composition-based stats. Identities = 167/608 (27%), Positives = 279/608 (45%), Gaps = 52/608 (8%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH--------THRITHMISQ 54 + + GVYQ D ++LY+GKA NL+KRIKSY N+ + RI M+ Q Sbjct: 8 LKNLSHSSGVYQYFDKNHQLLYIGKAKNLKKRIKSYFSVRNNEITPNYRTSLRIQMMVKQ 67 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114 I + + E +AL+LE ++IK+LKP++NILLRDDK++PYI + P R Sbjct: 68 IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127 Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 YFGPF S + ++SL L + + + C+ +QI+RC PC Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEN 183 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 +I+ E+Y++ E + + + + +++ M + + +E A+I+RDR+A + I Sbjct: 184 KITKEEYLKIAKECLEMIENKDKLI-KELELKMERLSNNLRFEEALIYRDRIAKIQKIAP 242 Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290 +D F+ Y + A + F G+ + + + + + + + Sbjct: 243 FTCMDLAKLYDLDIFAFYGRGHKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302 Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347 Y PE ILLS E L+ +Y K+ +++PK+G+K +IE A+ N Sbjct: 303 INHYQSHLPLMPEQILLSACSNEVLKELQEFISHRYSKKIALSIPKKGDKLALIEIAMKN 362 Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 A + +IL++ F L +P R+EI+D SH VG MVV + F Sbjct: 363 AQE--IFSQEKTSNEDLILEEARSLFKLECMPYRVEIFDTSHHANSQCVGGMVVYENHEF 420 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 KN YR+++L ++ M +L RR K P++ Sbjct: 421 QKNSYRRYHLK-----GSNEYTQMSELLTRRALDFAKE----------------PPPNLW 459 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521 ++DGG+ QL+ A +LK + + +I+I+K + G + L Sbjct: 460 VIDGGRVQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTPSNTFKLF 517 Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580 D L ++Q+LRDE+HR+AI HR + K L + GIG + LL FG+ + Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577 Query: 581 ISRSSPET 588 I ++S + Sbjct: 578 IEKASEQE 585 >gi|51598713|ref|YP_072901.1| excinuclease ABC subunit C [Borrelia garinii PBi] gi|51573284|gb|AAU07309.1| excinuclease ABC, subunit C [Borrelia garinii PBi] Length = 580 Score = 355 bits (912), Expect = 8e-96, Method: Composition-based stats. Identities = 162/595 (27%), Positives = 278/595 (46%), Gaps = 32/595 (5%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 ML+ ++LY+GKA NL+ RIKSY +H+I ++ + +I T +E EALLLE Sbjct: 1 MLNENKKILYIGKAKNLRSRIKSYFLEK-KSHKIKILMKNVKSIEVITTNSEYEALLLEC 59 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N+IK KP +N+ L+D K +P I IT K P + K R Q YFGPF +V +++ Sbjct: 60 NLIKTHKPDYNVKLKDGKGYPMIRIT-HEKYPRILKTRKIINDQSEYFGPFTNVKKLDQV 118 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194 ++ + +TF +R C + PCL + + +C G C E ++Y V++AK L+G Sbjct: 119 LDFINKTFKIRKCK----KKSNAPCLYYHMGQCLGVCYKENLEKEYQIEVNKAKSILNGN 174 Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM---DCFSLYHNK 251 + +I + A KED+E+AI ++ ++L I D ++ + Sbjct: 175 ISEILSQIDIKLKLAVQKEDFETAIKLKEMKSSLIEINQIQIVTKANNLNIDYVYVHPGE 234 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEE 311 N+ I + G+ F ++ + + + P+ I + + + Sbjct: 235 NVNTIIVLKYRDGKLVERDANFDESICKKDELVLQFLIQYYTSINMIVPDKIHIFLKDVD 294 Query: 312 TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTK 371 T +E + K +I + E KI+E A+ NA S + E L+ Sbjct: 295 TKNVEKLINEIKNTKTEIIYKETKEILKIMEMAISNAKLSLREY---ENKSNKALESLKI 351 Query: 372 KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMM 431 + +PK IE +D +H+ G V MV K Y+ + L+ DD + Sbjct: 352 FLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGIPFKENYKLYKLNSLLKGEIDDFRAI 411 Query: 432 RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENR 491 + + RR+S++I + P+++++DGGKGQLSAA +LK L +E++ Sbjct: 412 KEAILRRYSEIINKK--------------LELPNLILIDGGKGQLSAAFSILKSLKIEDK 457 Query: 492 ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK 551 + + S+AK + F + + + L P L +Q +RDEAHR A ++KRR+K Sbjct: 458 VKVCSLAKKHET-----IFLITNKKGINLPQGHPALRILQNVRDEAHRKANGFNKKRREK 512 Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 +I+G+G + +L+ GT K I S ++ ++ K+A +I Sbjct: 513 ITL-LYKKIDGVGEKTAQKILKLIGTYKDILPLSENEISEKIKVNIKLAKRIKEF 566 >gi|218562858|ref|YP_002344637.1| excinuclease ABC subunit C [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|81549181|sp|Q9PN51|UVRC_CAMJE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|112360564|emb|CAL35361.1| excinuclease ABC subunit C [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315927130|gb|EFV06481.1| excinuclease ABC, C subunit [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 600 Score = 355 bits (912), Expect = 9e-96, Method: Composition-based stats. Identities = 180/625 (28%), Positives = 292/625 (46%), Gaps = 55/625 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54 + +P GVYQ + G++LYVGKA NL+ R++SY + ++ RI MI + Sbjct: 9 ELKTLPNSTGVYQYFNQEGKLLYVGKAKNLKNRVRSYFAFTPNLHANPRNSLRIQKMIEE 68 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD- 113 ++ F T +E +AL+LE + IK+L P++NILLRDDK++PYI + + + P R Sbjct: 69 TVHLEFIATNSEADALILENSFIKQLHPKYNILLRDDKTYPYIYVDFEEEFPRFEITRKL 128 Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 + YFGPF + +++L + L+ A PC+ +QI RC PC Sbjct: 129 VKKSKIKYFGPF--FKGARELLDALYLYYPLKQKASC-----KSPCIFYQISRCLAPCDK 181 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 IS EKY+E + EA L + L + + + M E+YE A RD++A + ++ Sbjct: 182 LISREKYLEILDEAIHALLNPSVLL-KNLEKQMLVLAQNENYEEAAKVRDQIAMIKDLEV 240 Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNR--GTCTFFLKTDSESTNAQILSY 288 + + F+L ++ G+ + +K D + +I Sbjct: 241 KVEIDIAKLEDFEVFALAFKNSVLSTLRFVVQNGKIISANSKITPIKNDIQWDQNEIYKQ 300 Query: 289 FLRQFYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 + + ++ I + EE E+ LLE +++ K+ I +PK GEKR+I + A Sbjct: 301 LILENFSMDIPLLANVIYVYEEFEDRVLLEEILSQRFDKKISIKIPKIGEKRRICDLAFQ 360 Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 NA + + I K+ F L ++P IEI+DNSH+ G + VG MV N Sbjct: 361 NALLNIE--KEQKNHDFTIQKELKSYFELENLPNDIEIFDNSHLQGVANVGAMVTYRINS 418 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 + K++YRKF+L ++D MR VL R + ++ PD+ Sbjct: 419 WDKSKYRKFHLK-----HKNDYDQMREVLTR----------------RALDFDKIPPPDL 457 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNM 522 ++DGGK L A+ ++ V I IS AK + G + L++ Sbjct: 458 WLIDGGKALLDLAKEIIVSSGVNVDILAISKEKIDAKAHRAKGGAKDKIHSLKGEFSLSI 517 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKA--AYSPLDEINGIGPLRKRLLLQSFGTVKM 580 D L F+Q+LRDEAHRFAI+ H+ +KK S L + G+ + LL +G + Sbjct: 518 NDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLKSSKLANL-GLSSGVMQKLLAYYGNFES 576 Query: 581 ISRSSPETLASIEGISKKIACKIYN 605 I ++ + L + G +K A KI Sbjct: 577 IYKADFKDLTMLVG--RKAAQKIKE 599 >gi|317177347|dbj|BAJ55136.1| excinuclease ABC subunit C [Helicobacter pylori F16] Length = 594 Score = 355 bits (912), Expect = 1e-95, Method: Composition-based stats. Identities = 167/608 (27%), Positives = 280/608 (46%), Gaps = 52/608 (8%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH--------THRITHMISQ 54 + + GVYQ D ++LY+GKA NL+KRIKSY N+ + RI M+ Q Sbjct: 8 LKNLSHNSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSVRNNEITPNCRASLRIQMMVKQ 67 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114 I + + E +AL+LE ++IK+LKP++NILLRDDK++PYI + P R Sbjct: 68 IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127 Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 YFGPF S + ++SL L + + + C+ +QI+RC PC Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEN 183 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 +I+ E+Y++ E + + + + +++ M + + +E A+I+RDR+A + I Sbjct: 184 KITKEEYLKIAKECLEMIENKDKLI-KELELKMERLSNNLRFEEALIYRDRIAKIQKIAP 242 Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290 +D F+ Y + A + F G+ + + + + + + + Sbjct: 243 FTCMDLAKLYDLDIFAFYSGSHKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302 Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347 Y PE ILL+ E L+ QY K+ +++PK+G+K +IE A+ N Sbjct: 303 INHYQSHLPLMPEQILLNACSNETLKELQEFISHQYSKKIALSIPKKGDKLALIEIAMKN 362 Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 A + +IL++ F L +P R+EI+D SH VG MVV + F Sbjct: 363 AQE--IFSQEKTSNEDLILEEARSLFKLECMPYRVEIFDVSHHANSQCVGGMVVYENHEF 420 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 KN YR+++L ++ M +L RR K P++ Sbjct: 421 QKNSYRRYHLK-----GSNEYTQMSELLTRRALDFAKE----------------PPPNLW 459 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521 ++DGG+ QL+ A +LK + + +I+I+K + G + + L Sbjct: 460 VIDGGRAQLNIALEILKSSG--SFVEVIAISKEKRDFKAYRSKGGAKDIIHTARDTFKLL 517 Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580 D L ++Q+LRDE+HR+AI HR + K L + GIG + LL FG+ + Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577 Query: 581 ISRSSPET 588 I ++S + Sbjct: 578 IEKASEQE 585 >gi|217034132|ref|ZP_03439552.1| hypothetical protein HP9810_868g25 [Helicobacter pylori 98-10] gi|216943416|gb|EEC22872.1| hypothetical protein HP9810_868g25 [Helicobacter pylori 98-10] Length = 594 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 168/608 (27%), Positives = 281/608 (46%), Gaps = 52/608 (8%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQ 54 + + GVYQ D ++LY+GKA NL+KRIKSY ++ + RI M+ Q Sbjct: 8 LKNLSHSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIHNNEITPNHRTSLRIQMMVKQ 67 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114 I + + E +AL+LE ++IK+LKP++NILLRDDK++PYI + P R Sbjct: 68 IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127 Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 YFGPF S + ++SL L + + + C+ +QI+RC PC Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEN 183 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 +I+ E+Y++ E + + + + +++ M + + +E A+I+RDR+A + I Sbjct: 184 KITKEEYLKIAKECLEMIENKDKLI-KELELKMERLSNNLRFEEALIYRDRIAKIQKIAP 242 Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290 +D F+ Y N A + F G+ + + + + + + + Sbjct: 243 FTCMDLAKLYDLDIFAFYSGSNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302 Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347 Y PE ILL+ E L+ F QY K+ +++PK+G+K +IE A+ N Sbjct: 303 INHYQLHLPLMPEQILLNACSNETLKELQEFIFHQYSKKIALSIPKKGDKLALIEIAMKN 362 Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 A + +IL++ F L +P R+EI+D SH VG MVV + F Sbjct: 363 AQE--IFSQEKTSNEDLILEEARSLFKLECMPYRVEIFDTSHHANSQCVGGMVVYENHEF 420 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 KN YR+++L ++ M +L RR K P++ Sbjct: 421 QKNSYRRYHLK-----GSNEYTQMSELLTRRALDFAKE----------------PPPNLW 459 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521 ++DGG+ QL+ A +LK + + +I+I+K + G + + L Sbjct: 460 VIDGGRAQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTARDTFKLL 517 Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580 D L ++Q+LRDE+HR+AI HR + K L + GIG + LL FG+ + Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577 Query: 581 ISRSSPET 588 I ++S + Sbjct: 578 IEKASEQE 585 >gi|86152975|ref|ZP_01071180.1| excinuclease ABC, C subunit [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843860|gb|EAQ61070.1| excinuclease ABC, C subunit [Campylobacter jejuni subsp. jejuni HB93-13] Length = 600 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 177/625 (28%), Positives = 290/625 (46%), Gaps = 55/625 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54 + +P GVYQ + G++LYVGKA NL+ R++SY + ++ RI MI + Sbjct: 9 ELKTLPNSAGVYQYFNQEGKLLYVGKAKNLKNRVRSYFAFTPNLHANPRNSLRIQKMIEE 68 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD- 113 ++ F T +E +AL+LE + IK+L P++NILLRDDK++PYI + + + P R Sbjct: 69 TIHLEFITTNSEADALILENSFIKQLHPKYNILLRDDKTYPYIYVNFEEEFPRFEITRKL 128 Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 + YFGPF + +++L + L+ A PC+ +QI RC PC Sbjct: 129 VKKSKIKYFGPF--FKGARELLDALYLYYPLKQKASC-----KSPCIFYQISRCLAPCDK 181 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 IS EKY+E + EA L + + + + + M E+YE A RD++ + ++ Sbjct: 182 RISKEKYLEILDEAMHALLNPSILI-KNLEKQMLVLAQNENYEEAAKVRDQIVTIKDLEV 240 Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNR--GTCTFFLKTDSESTNAQILSY 288 + + F+L ++ G+ + +K D + +I Sbjct: 241 KVEMDVAKLEDFEVFALAFEDSMLSTLRFVVQNGKIISANSKITPIKNDIQWDQNEIYKQ 300 Query: 289 FLRQFYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 + + ++ I + EE E+ LLE +++ K+ I +PK GEKR+I + A Sbjct: 301 LILENFSMDIPLLANVIYVYEEFEDRVLLEEILSQRFDKKISIKIPKIGEKRRICDLAFQ 360 Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 NA + + I K+ F L ++P IEI+DNSH+ G + VG MV N Sbjct: 361 NALLNIE--KEQKNHGFTIQKELKSYFELENLPNDIEIFDNSHLQGVANVGAMVTYRINS 418 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 + K++YRKF+L ++D MR VL R + ++ PD+ Sbjct: 419 WDKSKYRKFHLK-----HKNDYDQMREVLTR----------------RALDFDKIPPPDL 457 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNM 522 ++DGGK L A+ ++ I IS AK + G + L++ Sbjct: 458 WLIDGGKALLDLAKEIIVSSGANVDILAISKEKIDAKAHRAKGGAKDKIHSLKGEFSLSI 517 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKA--AYSPLDEINGIGPLRKRLLLQSFGTVKM 580 D L F+Q+LRDEAHRFAI+ H+ +KK S L + G+ + LL +G + Sbjct: 518 NDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLKSSKLANL-GLSSGVIQKLLAYYGNFES 576 Query: 581 ISRSSPETLASIEGISKKIACKIYN 605 I ++ + L + G +K A KI Sbjct: 577 IYKADFKDLTMLVG--RKAAQKIKE 599 >gi|283956641|ref|ZP_06374120.1| excinuclease ABC subunit C [Campylobacter jejuni subsp. jejuni 1336] gi|283791890|gb|EFC30680.1| excinuclease ABC subunit C [Campylobacter jejuni subsp. jejuni 1336] Length = 600 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 185/625 (29%), Positives = 292/625 (46%), Gaps = 55/625 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54 + +P GVYQ + G++LYVGKA NL+ RIKSY + ++ RI MI + Sbjct: 9 ELKTLPNSAGVYQYFNQEGKLLYVGKAKNLKNRIKSYFAFTPNLHANPRNSLRIQKMIEE 68 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD- 113 ++ F T +E +AL+LE + IK+L P++NILLRDDK++PYI + + + P R Sbjct: 69 TVHLEFITTNSEADALILENSFIKQLHPKYNILLRDDKTYPYIYVNFEEEFPRFEITRKL 128 Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 + YFGPF + +++L + L+ A PC+ +QI RC PC Sbjct: 129 VKKSKIKYFGPF--FKGARELLDALYLYYPLKQKASC-----KSPCIFYQISRCLAPCDK 181 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 IS EKY+E + EA L + + + + + M E+YE A RD++A + ++ Sbjct: 182 RISREKYLEILDEAMHALLNPSILI-KNLEKQMLVLAQNENYEEAAKVRDQIATIKDLEV 240 Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNR--GTCTFFLKTDSESTNAQILSY 288 + + F+L ++ G+ + +K D + +I Sbjct: 241 RVEIDIAKLEDFEVFALAFENSMLSTLRFVVQNGKIISANSKITPIKNDIQWDKNEIYKQ 300 Query: 289 FLRQFYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 + + ++ I + EE E+ LLE +++ K+ I +PK GEKR+I + A Sbjct: 301 LILENFSMDIPLLANVIYVYEEFEDRVLLEEILSQRFDKKISIKIPKIGEKRRICDLAFQ 360 Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 NA + + I K+ F L ++P IEI+DNSH+ G + VG MV N Sbjct: 361 NAFLNIE--KEQKNHGFTIQKELKSYFELENLPNDIEIFDNSHLQGVANVGAMVNYSANS 418 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 + K++YRKF+L ++D MR VL RR KN PD+ Sbjct: 419 WDKSKYRKFHLK-----HKNDYDQMREVLMRRALDFDKN----------------PPPDL 457 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNM 522 ++DGGK L A+ ++ I IS AK + G + L++ Sbjct: 458 WLIDGGKTLLDLAKEIIVSSGANVDILAISKEKIDAKAHRAKGGAKDKIHSLKGEFSLSI 517 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKA--AYSPLDEINGIGPLRKRLLLQSFGTVKM 580 D L F+Q+LRDEAHRFAI+ H+ +KK S L + G+ + LL +G + Sbjct: 518 NDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLKSSKLANL-GLSSGVIQKLLAYYGNFES 576 Query: 581 ISRSSPETLASIEGISKKIACKIYN 605 I ++ + LA + G KK A KI Sbjct: 577 IYKADFKDLAMLVG--KKAAQKIKE 599 >gi|161528611|ref|YP_001582437.1| excinuclease ABC subunit C [Nitrosopumilus maritimus SCM1] gi|160339912|gb|ABX12999.1| excinuclease ABC, C subunit [Nitrosopumilus maritimus SCM1] Length = 528 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 170/559 (30%), Positives = 266/559 (47%), Gaps = 48/559 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PG+Y M D G ++Y+GKA NL+KR+KSY N ++ ++ I++I F +T Sbjct: 9 TIPTDPGIYLMKDSDGTIIYIGKAKNLKKRVKSYFLKN-QNYKTQKLVQNISDIEFVLTD 67 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST----IQGS 120 E EA LLE+NMIK+ +PRFNI L+D + + Y+ I+ K P L R + +G Sbjct: 68 NESEAFLLESNMIKKYRPRFNIELKDQQRYTYLRIS-DEKYPRLLVARRTRDGKFLGKGK 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 FGPF + TI +L++ F +R C + CL + + C GPC + ++Y Sbjct: 127 TFGPFTQGSSKLLTIGALRKAFQIRICKTLP----KKVCLEYHLGNCEGPCEFNDAQDRY 182 Query: 181 MEFVHEAKKFLSGGNHN--LKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 + V ++ L G N +K+ M+QA + +E A RD L L +Q Sbjct: 183 PKHVAALEEVLKGKNQTKIFTKKLEEEMHQAAELQQFERAKDIRDTLIRLGSLQTKQKME 242 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 Y + + F + + A + G R + FF +++ S FL Q+Y+ Sbjct: 243 YVENSDEEYFGIGIQEQSATVMNFRMINGVIRDSDKFFFDLVGDNS----FSNFLYQYYS 298 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P+ I++SE E LLE +Q G+ VKI+ P +G+K+ I+ L N Sbjct: 299 THKIPKYIIVSELPENQKLLESLLSEQAGFSVKISTPTKGKKKDIMNLILKNIK------ 352 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L + L + LP IP IE +D S+ AVG M K+ YRKF Sbjct: 353 LIHSKGGEPGLVELKDILHLPVIPNVIECFDISNHGEDFAVGSMAQFVNGKPNKSGYRKF 412 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 + V +DD AM+ V++RR+ +L++ L PD++++DGGKGQ Sbjct: 413 KIKT--VSGRDDFAMIGEVIKRRYYRLLEENSEL--------------PDLIVIDGGKGQ 456 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 L+AA L+ L + ++ IS+AK + E + K + + P L +Q RD Sbjct: 457 LNAATKSLQSLGL--KLPCISLAKENE-----EIYLPKTKNPVTIAKNKPSLQILQHARD 509 Query: 536 EAHRFAITTHRKRRKKAAY 554 E HRF + +R RK Sbjct: 510 ETHRFGVAYNRTIRKNQIK 528 >gi|85057678|ref|YP_456594.1| excinuclease ABC subunit C [Aster yellows witches'-broom phytoplasma AYWB] gi|119367627|sp|Q2NJ78|UVRC_AYWBP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|84789783|gb|ABC65515.1| excinuclease ABC subunit C [Aster yellows witches'-broom phytoplasma AYWB] Length = 589 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 152/616 (24%), Positives = 267/616 (43%), Gaps = 43/616 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P PG Y + ++YVGKA NL+KR++SY + + +I + + + Sbjct: 7 KIKTLPPNPGCYLFKNTKDTIIYVGKAKNLKKRVQSYFTK-RNNLKTAMLIEETQDFFYI 65 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS- 120 +T E EAL+LEAN+IK P++N L DDK++PYI IT K K P L R G Sbjct: 66 ITNNEQEALILEANLIKTHTPKYNFKLLDDKTYPYIEIT-KEKHPQLKISRFKQIPPGKI 124 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 FGP+ ++ + ++ + L +PCL F I +C G C + Y Sbjct: 125 IFGPYPNLKSTKE----TLKLLHLLYPLRRCQLASKKPCLHFHINQCLGAC--AGKTINY 178 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DS 237 + KFL G ++ +K+ M +A+ K YE A +RD + ++ + Sbjct: 179 KPNIDAITKFLKGNIKDILKKLHHLMQKASEKMFYEKAQEYRDIIDSIKQTTKKQLISNQ 238 Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D F+ N++ IQ G + + + +L +Y Sbjct: 239 KLKNCDIFAYAFNQDQIAIQILKIRQGNIVDSYRSVFSYVGFV--CENILTYLNCYYQKN 296 Query: 298 PCPENILLSEEAEETSLLE---ISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P+ I+ + +E L + + + K+ + +G+K+K+ AL NA + Sbjct: 297 IKPDIIITGKNQDENILQQTITNQTLLEQILQTKVNIYHKGDKKKLFLLALKNAQNDLSH 356 Query: 355 KLSTEISHQMILKDF--TKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 S +++ KRI+++DNS + G + V +V F K Y Sbjct: 357 NNLIYQSKDQKIQEALNKLAIIFNKDIKRIDVFDNSQLFGKAFVAARIVFNHFEFDKKLY 416 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472 R F++ ++ L R +++ + E + D++++DG Sbjct: 417 RTFHIKGEL---PNEYQAFEETLTRCYNKGKEAENDAT--------------DLILVDGS 459 Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532 QL +Q LKKL E I + ++ K K V E L+L + +F++ Sbjct: 460 LVQLRQSQKTLKKLGYE--IPLGALQKNNKHQL---THLVTFQEKLMLEQDPNLFHFLKS 514 Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 L +E HRFA++ HRK +KK + L I G+G +RK+ +L F +++ I +++ + Sbjct: 515 LSEEVHRFAVSFHRKTKKKLDYKTTLSNIKGVGVVRKKAILNHFESLEAIKKATLQDFQK 574 Query: 592 IEGISKKIACKIYNHF 607 I GI++K+ I Sbjct: 575 I-GINQKLFLLIKKSL 589 >gi|86150569|ref|ZP_01068792.1| excinuclease ABC, C subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596087|ref|ZP_01099324.1| excinuclease ABC, C subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|85838920|gb|EAQ56186.1| excinuclease ABC, C subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190928|gb|EAQ94900.1| excinuclease ABC, C subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|284926470|gb|ADC28822.1| excinuclease ABC subunit C [Campylobacter jejuni subsp. jejuni IA3902] Length = 600 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 179/625 (28%), Positives = 291/625 (46%), Gaps = 55/625 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54 + +P GVYQ + G++LYVGKA NL+ R++SY + ++ RI MI + Sbjct: 9 ELKTLPNSTGVYQYFNQEGKLLYVGKAKNLKNRVRSYFAFTPNLHANPRNSLRIQKMIEE 68 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD- 113 ++ F T +E +AL+LE + IK+L P++NILLRDDK++PYI + + + P R Sbjct: 69 TVHLEFIATNSEADALILENSFIKQLHPKYNILLRDDKTYPYIYVDFEEEFPRFEITRKL 128 Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 + YFGPF + +++L + L+ A PC+ +QI RC PC Sbjct: 129 VKKSKIKYFGPF--FKGARELLDALYLYYPLKQKASC-----KSPCIFYQISRCLAPCDK 181 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 IS EKY+E + EA L + L + + + M E+YE A RD++A + ++ Sbjct: 182 LISREKYLEILDEAIHALLNPSVLL-KNLEKQMLVLAQNENYEEAAKVRDQIAMIKDLEV 240 Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNR--GTCTFFLKTDSESTNAQILSY 288 + + F+L ++ G+ + +K D + +I Sbjct: 241 KVEIDIAKLEDFEVFALAFKNSVLSTLRFVVQNGKIISANSKITPIKNDIQWDQNEIYKQ 300 Query: 289 FLRQFYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 + + ++ I + EE E+ LLE +++ K+ I +PK GEKR+I + A Sbjct: 301 LILENFSMDIPLLANVIYVYEEFEDRVLLEEILSQRFDKKISIKIPKIGEKRRICDLAFQ 360 Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 NA + + I K+ F L ++P IEI+DNSH+ G + VG MV N Sbjct: 361 NALLNIE--KEQKNHDFTIQKELKSYFELENLPNDIEIFDNSHLQGVANVGAMVTYRINS 418 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 + K++YRKF+L ++D MR VL R + ++ PD+ Sbjct: 419 WDKSKYRKFHLK-----HKNDYDQMREVLTR----------------RALDFDKIPPPDL 457 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNM 522 ++DGGK L A+ ++ I IS AK + G + L++ Sbjct: 458 WLIDGGKALLDLAKEIIVSSGANVDILAISKEKIDAKAHRAKGGAKDKIHSLKGEFSLSI 517 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKA--AYSPLDEINGIGPLRKRLLLQSFGTVKM 580 D L F+Q+LRDEAHRFAI+ H+ +KK S L + G+ + LL +G + Sbjct: 518 NDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLKSSKLANL-GLSSGVMQKLLAYYGNFES 576 Query: 581 ISRSSPETLASIEGISKKIACKIYN 605 I ++ + L + G +K A KI Sbjct: 577 IYKADFKDLTMLVG--RKAAQKIKE 599 >gi|109947296|ref|YP_664524.1| excinuclease ABC subunit C [Helicobacter acinonychis str. Sheeba] gi|122973348|sp|Q17XV1|UVRC_HELAH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|109714517|emb|CAJ99525.1| excinuclease ABC subunit C [Helicobacter acinonychis str. Sheeba] Length = 594 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 164/608 (26%), Positives = 281/608 (46%), Gaps = 52/608 (8%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQ 54 + + GVYQ D ++LY+GKA NL+KRIKSY ++ + RI M+ Q Sbjct: 8 LKNLSNGSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIHNNEITPNHRTSLRIQMMVKQ 67 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114 I + + E +AL+LE ++IK+LKP++NILLRDDK++PYI + P R Sbjct: 68 IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127 Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 + YFGPF S + ++SL L + + + C+ +QI+RC PC Sbjct: 128 LKQLGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEN 183 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 +I+ E+Y++ E + + + + +++ M++ + +E A+I+RDR++ + I Sbjct: 184 KITKEEYLKIAKECLEMIENKDKLI-KELQLKMDRLSSNLRFEEALIYRDRISKIQKIAP 242 Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290 +D F+ Y N A + F G+ + + + + + + + Sbjct: 243 FTCMDLAKLYDLDIFAFYGKNNRAVLVKMFMRGGKIISSAFEKIHSLNGFDADEAMKQAI 302 Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347 Y PE ILL+ E L+ + ++ K+ + +PK+G+K +IE A+ N Sbjct: 303 INHYQSHLPLMPEQILLNACSNETLKELQEFIYHKHSKKITLNIPKKGDKLALIEIAMKN 362 Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 A + + IL++ L +P R+EI+D SH VG MVV + F Sbjct: 363 AQE--IFSQEKTSNEEEILEEVRSLLNLECVPYRVEIFDTSHHANSQCVGGMVVYENSAF 420 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 KN YR+++L ++ A M +L RR K P++ Sbjct: 421 QKNSYRRYHLK-----GSNEYAQMSELLTRRALDFAKE----------------PPPNLW 459 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521 ++DGG+ QL+ A LK + + +I+I+K + G + + L Sbjct: 460 VIDGGRVQLNIALETLKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTMSDTFKLL 517 Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580 D L ++Q+LRDE+HR+AI HR + K L + GIG + LL FG+ + Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKIKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577 Query: 581 ISRSSPET 588 I ++S + Sbjct: 578 IEKASEQE 585 >gi|317014230|gb|ADU81666.1| excinuclease ABC subunit C [Helicobacter pylori Gambia94/24] Length = 594 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 170/600 (28%), Positives = 275/600 (45%), Gaps = 52/600 (8%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQINNIRFTV 62 GVYQ D ++LY+GKA NL+KRIKSY ++ + RI M+ QI + + Sbjct: 16 GVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIRNNEITPNSRTSLRIQMMVKQIAFLETIL 75 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-STIQGSY 121 E +AL+LE ++IK+LKP++NILLRDDK++PYI + P R Y Sbjct: 76 VENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKILKQPGVKY 135 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPF S + ++SL L + + + C+ +QI+RC PC +I+ E+Y+ Sbjct: 136 FGPFTSGS--KDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEDKITKEEYL 191 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 + E + + + + +++ M + + +E A+I+RDR+A + I Sbjct: 192 KIAKECLEMIENKDRLI-KELELKMERLSSNLRFEEALIYRDRIAKIQKIAPFTCMDLAK 250 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 +D F+ Y N A + F G+ + + + + + + + Y Sbjct: 251 LYDLDIFAFYGGNNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAIINHYQSHL 310 Query: 299 C--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 PE ILLS E L+ QY K+ + +PK+G+K +IE A+ NA Sbjct: 311 PLMPEQILLSACSNEVLKELQEFISHQYSKKIALNIPKKGDKLALIEIAMKNAQE--IFS 368 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 S IL++ F L +P R+EI+D SH VG MVV N F KN YR++ Sbjct: 369 QEKTSSEDRILEETRSLFNLECVPYRVEIFDTSHHSNSQCVGGMVVYENNAFQKNSYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 +L ++ M +L RR K P++ ++DGG+ Q Sbjct: 429 HLK-----GSNEYDQMSELLTRRALDFAKE----------------PPPNLWVIDGGRVQ 467 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLNMRDPILYF 529 L+ A +LK + + +I+I+K + G + L D L + Sbjct: 468 LNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTPSNTFKLLPSDKRLQW 525 Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 +Q+LRDE+HR+AI HR + K L + GIG + LL FG+ + I ++S + Sbjct: 526 VQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEAIEKASEQE 585 >gi|121613588|ref|YP_001000921.1| excinuclease ABC subunit C [Campylobacter jejuni subsp. jejuni 81-176] gi|167005831|ref|ZP_02271589.1| excinuclease ABC subunit C [Campylobacter jejuni subsp. jejuni 81-176] gi|189038034|sp|A1W0N0|UVRC_CAMJJ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|87249544|gb|EAQ72503.1| excinuclease ABC, C subunit [Campylobacter jejuni subsp. jejuni 81-176] Length = 600 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 178/625 (28%), Positives = 290/625 (46%), Gaps = 55/625 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54 + +P GVYQ + G++LYVGKA NL+ R+KSY + ++ RI MI + Sbjct: 9 ELKTLPNSAGVYQYFNQEGKLLYVGKAKNLKNRVKSYFAFTPNLHANPRNSLRIQKMIEE 68 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD- 113 ++ F T +E +AL+LE + IK+L P++NILLRDDK++PYI + + + P R Sbjct: 69 TVHLEFITTNSEADALILENSFIKQLHPKYNILLRDDKTYPYIYVNFEEEFPRFEITRKL 128 Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 + YFGPF + +++L + L+ A PC+ +QI RC PC Sbjct: 129 VKKSKIKYFGPF--FKGARELLDALYLYYPLKQKASC-----KSPCIFYQISRCLAPCDK 181 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 IS EKY+E + EA L + + + + + M E+YE A RD++ + ++ Sbjct: 182 RISKEKYLEILDEAMHALLNPSILI-KNLEKQMLVLAQNENYEEAAKVRDQIVTIKDLEV 240 Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNR--GTCTFFLKTDSESTNAQILSY 288 + + F+L ++ G+ + +K D + +I Sbjct: 241 KVEMDVAKLEDFEVFALAFEDSMLSTLRFVVQNGKIISANSKITPIKNDIQWDQNEIYKQ 300 Query: 289 FLRQFYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 + + ++ I + EE E+ LLE +++ K+ I +PK GEKR+I + A Sbjct: 301 LILENFSMDIPLLANVIYVYEEFEDRVLLEEILSQRFDKKISIKIPKIGEKRRICDLAFQ 360 Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 NA + + I K+ F L ++P IEI+DNSH+ G + VG MV N Sbjct: 361 NALLNIE--KEQKNHDFTIQKELKFYFELENLPNDIEIFDNSHLQGVANVGAMVTYRINS 418 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 + K++YRKF+L ++D MR VL R + ++ PD+ Sbjct: 419 WDKSKYRKFHLK-----HKNDYDQMREVLTR----------------RALDFDKIPPPDL 457 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNM 522 ++DGGK L A+ ++ I IS AK + G + L++ Sbjct: 458 WLIDGGKVLLDLAKKIIVSSGANVDILAISKEKIDAKAHRAKGGAKDKIHSLKGEFSLSI 517 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKA--AYSPLDEINGIGPLRKRLLLQSFGTVKM 580 D L F+Q+LRDEAHRFAI+ H+ +KK S L + G+ + LL +G + Sbjct: 518 NDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLKSSKLANL-GLSSGVIQKLLAYYGNFES 576 Query: 581 ISRSSPETLASIEGISKKIACKIYN 605 I ++ + L + G +K A KI Sbjct: 577 IYKADFKDLTMLVG--RKAAQKIKE 599 >gi|332673373|gb|AEE70190.1| excision endonuclease subunit UvrC [Helicobacter pylori 83] Length = 594 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 167/608 (27%), Positives = 280/608 (46%), Gaps = 52/608 (8%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH--------THRITHMISQ 54 + + GVYQ D ++LY+GKA NL+KRIKSY N+ + RI M+ Q Sbjct: 8 LKNLSHSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIRNNEITPNHCASLRIQMMVKQ 67 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114 I + + E +AL+LE ++IK+LKP++NILLRDDK++PYI + P R Sbjct: 68 IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127 Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 YFGPF S + ++SL L + + + C+ +QI+RC PC Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEN 183 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 +I+ E+Y++ E + + + + +++ M + + +E A+I+RDR+A + I Sbjct: 184 KITKEEYLKIAKECLEMIENKDKLI-KELELKMERLSNNLRFEEALIYRDRIAKIQKIAP 242 Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290 +D F+ Y + A + F G+ + + + + + + + Sbjct: 243 FTCMDLAKLYDLDIFAFYSGSHKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302 Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347 Y PE ILL+ E L+ QY K+ +++PK+G+K +IE A+ N Sbjct: 303 INHYQSHLPLMPEQILLNACSNETLKELQEFISHQYSKKIALSIPKKGDKLALIEIAMKN 362 Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 A + +IL++ F L +P R+EI+D SH VG MVV + F Sbjct: 363 AQE--IFSQEKTYNEDLILEEARSLFKLECMPYRVEIFDASHHANGQCVGGMVVYENHEF 420 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467 KN YR+++L ++ M +L RR K P++ Sbjct: 421 QKNSYRRYHLK-----GSNEYTQMSELLTRRALDFAKE----------------PPPNLW 459 Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521 ++DGG+ QL+ A +LK + + +I+I+K + G + + L Sbjct: 460 VIDGGRVQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTSNDTFKLL 517 Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580 D L ++Q+LRDE+HR+AI HR + K L + GIG + LL FG+ + Sbjct: 518 PSDKRLQWMQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577 Query: 581 ISRSSPET 588 I ++S + Sbjct: 578 IEKASEQE 585 >gi|206895692|ref|YP_002247526.1| excinuclease ABC, C subunit [Coprothermobacter proteolyticus DSM 5265] gi|206738309|gb|ACI17387.1| excinuclease ABC, C subunit [Coprothermobacter proteolyticus DSM 5265] Length = 595 Score = 354 bits (908), Expect = 3e-95, Method: Composition-based stats. Identities = 151/625 (24%), Positives = 263/625 (42%), Gaps = 56/625 (8%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 EQ P PGVY +G+V+YVGKA +L R+ Y S + ++S + + + + Sbjct: 8 EQAPHSPGVYLFYGNSGQVIYVGKASDLHNRLADYARSQP-GQKEHLIMSNASKVSWIIV 66 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHR---DSSTIQGS 120 E ++L LE +IK+ P +N+LL+D K + Y+ I + PA+ R Sbjct: 67 ANERQSLELEETLIKKYAPPYNVLLKDGKGYSYLRIDLSQEYPAVEIVRIKQRKPKPGQL 126 Query: 121 YFGPFAS----------VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGP 170 FGPF ++ I + F +RSC + R RPC+ ++I RCSGP Sbjct: 127 LFGPFVPLRVPDMPGKVRGDLKNLIQIAEEVFGIRSCK-GPLKRRMRPCVYYEIGRCSGP 185 Query: 171 CTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH 230 C G+IS E+Y + V KFL G ++ ++ + M + ++E A RD L + Sbjct: 186 CIGKISPEEYKDRVQLFIKFLKGDTKEVENRLTKMMKEEAENLNFERAAELRDLLYTVKR 245 Query: 231 IQNHNDSIYN-RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYF 289 I ++ + D + ++ A G + + ++++ F Sbjct: 246 IGMQREANVDGSADLIAFALKEDQASGFVVSVRDGMITNVFGLKYSSGATIEPSEVMESF 305 Query: 290 LRQF---YTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 R + Y ++ + + L + + + ++ A Sbjct: 306 FRDYVRLYHEQGVLAYVNGAVAETLKPLGSLHGVQVEAVPDHW--------KALLRVAEE 357 Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 NA S ++ + L + L HIP RIE +D + + G VG V Sbjct: 358 NA-ESILERDEGTERIKRGLLRIKEVLRLEHIPTRIEGFDMAQLFGSERVGGKVAYVNGQ 416 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 F YR + + + +DD + M VL R +L + L PD+ Sbjct: 417 FYTPWYRHYRIKGSY---KDDFSFMYEVLIR---RLQDEKTGL--------------PDL 456 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526 +++DGG+ L+ + +++L V + ++IAK R F K + + L D Sbjct: 457 MLIDGGRQHLAVVEKAMEQLGVT--VPAVAIAKPDDR-----LFVSWKEDPIYLPPEDVG 509 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586 +Q +R+EAHR+ + HRK R + L + GIG R+R L+++FG + + +S Sbjct: 510 KQVLQTIRNEAHRWVNSYHRKLR-EDFGDILLGVPGIGKARRRKLIETFGGMVGLQAASI 568 Query: 587 ETLASIEGISKKIACKIYNHFHKNT 611 E L G+ K+A ++Y H Sbjct: 569 EELTVKGGLPPKVAQQLYRALHPED 593 >gi|15639463|ref|NP_218913.1| excinuclease ABC subunit C [Treponema pallidum subsp. pallidum str. Nichols] gi|189025703|ref|YP_001933475.1| excinuclease ABC subunit C [Treponema pallidum subsp. pallidum SS14] gi|6136158|sp|O83485|UVRC_TREPA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|238689322|sp|B2S367|UVRC_TREPS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|3322752|gb|AAC65452.1| excinuclease ABC, subunit C (uvrC) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018278|gb|ACD70896.1| excinuclease ABC, subunit C [Treponema pallidum subsp. pallidum SS14] gi|291059855|gb|ADD72590.1| excinuclease ABC subunit C [Treponema pallidum subsp. pallidum str. Chicago] Length = 691 Score = 354 bits (908), Expect = 3e-95, Method: Composition-based stats. Identities = 150/668 (22%), Positives = 261/668 (39%), Gaps = 70/668 (10%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + P GVY D+ G V+YVGKA +L+ R+ SY H + ++S+ + + Sbjct: 13 IQALSAPSTSGVYLWKDVHGVVIYVGKAKSLRTRLTSYFR-CRHDPKTRVLMSRAAALEY 71 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T E EALLLE +IK+ PR+NI L+D K++P + +T P +++ R Sbjct: 72 LQTQHEYEALLLENTLIKKHTPRYNICLKDGKTYPLLKLTC-EPFPRIFRTRQFCQDGAR 130 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGPF V ++ + + RT+ +R+C R R PCL + +KRC PC G +S Y Sbjct: 131 YFGPFPDVQILDSFLKLILRTYKIRTCT--TLRKRKNPCLYYHLKRCDAPCCGWVSPRTY 188 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH---NDS 237 + +HE L G ++ + M +A +E +E+A RD + A+ I + D Sbjct: 189 QKDIHEITLLLEGNIDATVARLEKRMKRAVRQEAFEAAARIRDDIQAIRCITHKSLVQDM 248 Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D + + G+ G F ++ +ILS FL +Y+D Sbjct: 249 DERARDYIAWSSTGAIVTFAVLRMRGGKLNGRELFRTRSLKNEE--EILSEFLITYYSDH 306 Query: 298 PCPENILLS-------EEAEETSLLEISFFKQYGYKVKITVPKQG----EKRKIIEQALI 346 P ++ + + + + + + Sbjct: 307 TIPPHLFVHSSAGLAEHWLSHKAGTQCTVTLIPLHTFPTPQTPSSTVTTNAPTLAASQNS 366 Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 NA + + +E S L+ + ++++H A+ M + + Sbjct: 367 NAVQDSGLRSCSETSTMHTLQKAHDACTASEGTRENTPHESAHTPHHRAILAMAQLNAHE 426 Query: 407 ---------------------------------FVKNQYRKFNLHPNDVKTQDDCAMMRM 433 F + + + ++ + Sbjct: 427 DITRYLKNRGADDALKELQKQLHLARIPTLIEGFDISHLGGKYTVASLICFKNGAPDTKN 486 Query: 434 VLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV------ILDGGKGQLSAAQGVLKKLN 487 ++ + + P+ ++DGG G +SAAQ VL L Sbjct: 487 YRLFNLRAHDTRIDDFASMREAIARRYTHTPEGYTLPDLILVDGGIGHVSAAQHVLDALG 546 Query: 488 VENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRK 547 + I ++ +AK + E F LVL+ R+P L+ +QR+RDEAHRFAIT +R Sbjct: 547 LS--IPLVGLAKRAE-----ELFIPNSPTPLVLDRRNPALHMLQRIRDEAHRFAITRNRH 599 Query: 548 RR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 R KK + + +G +R LL FG+ + + ++P+ +A+ I A I Sbjct: 600 LRTKKELVLSFERLPHVGKVRAHRLLAHFGSFRSLQSATPQDIATAIHIPLTQAHTI--- 656 Query: 607 FHKNTSHT 614 H T T Sbjct: 657 LHAATRST 664 >gi|315929341|gb|EFV08548.1| excinuclease ABC, C subunit [Campylobacter jejuni subsp. jejuni 305] Length = 600 Score = 354 bits (908), Expect = 3e-95, Method: Composition-based stats. Identities = 179/625 (28%), Positives = 291/625 (46%), Gaps = 55/625 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54 + +P GVYQ + G++LYVGKA NL+ R++SY + ++ RI MI + Sbjct: 9 ELKTLPNSTGVYQYFNQEGKLLYVGKAKNLKNRVRSYFAFTPNLHANPRNSLRIQKMIEE 68 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD- 113 ++ F T +E +AL+LE + IK+L P++NILLRDDK++PYI + + + P R Sbjct: 69 TVHLEFIATNSEADALILENSFIKQLHPKYNILLRDDKTYPYIYVNFEEEFPRFEITRKL 128 Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 + YFGPF + +++L + L+ A PC+ +QI RC PC Sbjct: 129 VKKSKIKYFGPF--FKGARELLDALYLYYPLKQKASC-----KSPCIFYQISRCLAPCDK 181 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 IS EKY+E + EA L + L + + + M E+YE A RD++A + ++ Sbjct: 182 LISREKYLEILDEAIHALLNPSVLL-KNLEKQMLVLAQNENYEEAAKVRDQIAMIKDLEV 240 Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNR--GTCTFFLKTDSESTNAQILSY 288 + + F+L ++ G+ + +K D + +I Sbjct: 241 KVEIDIAKLEDFEVFALAFKNSVLSTLRFVVQNGKIISANSKITPIKNDIQWDQNEIYKQ 300 Query: 289 FLRQFYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 + + ++ I + EE E+ LLE +++ K+ I +PK GEKR+I + A Sbjct: 301 LILENFSMDIPLLANVIYVYEEFEDRVLLEEILSQRFDKKISIKIPKIGEKRRICDLAFQ 360 Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 NA + + I K+ F L ++P IEI+DNSH+ G + VG MV N Sbjct: 361 NALLNIE--KEQKNHDFTIQKELKSYFELENLPNDIEIFDNSHLQGVANVGAMVTYRINS 418 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 + K++YRKF+L ++D MR VL R + ++ PD+ Sbjct: 419 WDKSKYRKFHLK-----HKNDYDQMREVLTR----------------RALDFDKIPPPDL 457 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNM 522 ++DGGK L A+ ++ I IS AK + G + L++ Sbjct: 458 WLIDGGKALLDLAKEIIVSSGANVDILAISKEKIDAKAHRAKGGAKDKIHSLKGEFSLSI 517 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKA--AYSPLDEINGIGPLRKRLLLQSFGTVKM 580 D L F+Q+LRDEAHRFAI+ H+ +KK S L + G+ + LL +G + Sbjct: 518 NDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLKSSKLANL-GLSSGVMQKLLAYYGNFES 576 Query: 581 ISRSSPETLASIEGISKKIACKIYN 605 I ++ + L + G +K A KI Sbjct: 577 IYKADFKDLTMLVG--RKAAQKIKE 599 >gi|148926243|ref|ZP_01809928.1| excinuclease ABC subunit C [Campylobacter jejuni subsp. jejuni CG8486] gi|145845414|gb|EDK22507.1| excinuclease ABC subunit C [Campylobacter jejuni subsp. jejuni CG8486] Length = 600 Score = 354 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 180/625 (28%), Positives = 290/625 (46%), Gaps = 55/625 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54 + +P GVYQ + G++LYVGKA NL+ R+KSY + ++ RI MI + Sbjct: 9 ELKTLPNSTGVYQYFNQEGKLLYVGKAKNLKNRVKSYFAFTPNLHANPRNSLRIQKMIEE 68 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD- 113 ++ F T +E +AL+LE + IK+L P++NILLRDDK++PYI + + + P R Sbjct: 69 TVHLEFIATNSEADALILENSFIKQLHPKYNILLRDDKTYPYIYVDFEEEFPRFEITRKL 128 Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 + YFGPF + ++ L + L+ A PC+ +QI RC PC Sbjct: 129 VKKSKIKYFGPF--FKGARELLDVLYLYYPLKQKASC-----KSPCIFYQISRCLAPCDK 181 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 IS EKY+E + EA L + L + + + M E+YE A RD++A + ++ Sbjct: 182 LISKEKYLEILDEAIHALLNPSVLL-KNLEKQMLVLAQNENYEEAAKVRDQIAMIKDLEV 240 Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNR--GTCTFFLKTDSESTNAQILSY 288 + + F+L ++ G+ + +K D + +I Sbjct: 241 KVEIDIAKLEDFEVFALAFKNSVLSTLRFVVQNGKIISANSKITPIKNDIQWDQNEIYKQ 300 Query: 289 FLRQFYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 + + ++ I + EE E+ LLE +++ K+ I +PK GEKR+I + A Sbjct: 301 LILENFSMDIPLLANVIYVYEEFEDRVLLEEILSQRFDKKISIKIPKIGEKRRICDLAFQ 360 Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 NA + + I K+ F L ++P IEI+DNSH+ G + VG MV N Sbjct: 361 NALLNIE--KEQKNHDFTIQKELKFYFELENLPNDIEIFDNSHLQGVANVGAMVTYRINS 418 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 + K++YRKF+L ++D MR VL R + ++ PD+ Sbjct: 419 WDKSKYRKFHLK-----HKNDYDQMREVLTR----------------RALDFDKIPPPDL 457 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNM 522 ++DGGK L A+ ++ I IS AK + G + L++ Sbjct: 458 WLIDGGKALLDLAKEIIVSSGANVDILAISKEKIDAKAHRAKGGAKDKIHSLKGEFSLSI 517 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKA--AYSPLDEINGIGPLRKRLLLQSFGTVKM 580 D L F+Q+LRDEAHRFAI+ H+ +KK S L + G+ + LL +G + Sbjct: 518 NDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLKSSKLANL-GLSSGVIQKLLAYYGNFES 576 Query: 581 ISRSSPETLASIEGISKKIACKIYN 605 I ++ + L + G +K A KI Sbjct: 577 IYKADFKDLTMLVG--RKAAQKIKE 599 >gi|145642359|ref|ZP_01797921.1| excinuclease ABC subunit C [Haemophilus influenzae R3021] gi|145272960|gb|EDK12844.1| excinuclease ABC subunit C [Haemophilus influenzae 22.4-21] Length = 474 Score = 354 bits (907), Expect = 4e-95, Method: Composition-based stats. Identities = 166/491 (33%), Positives = 264/491 (53%), Gaps = 27/491 (5%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+M D +V+YVGKA +L+KR+ SY N + + +++ I++I T+T +E E Sbjct: 1 EPGVYRMYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVASIHHIDTTLTSSETE 60 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE N IK +PR+N+LLRDDKS+P+IL+T K + P + +R S G YFGP+ Sbjct: 61 ALLLEHNFIKLYQPRYNVLLRDDKSYPFILLT-KERHPRITSYRGSKKFAGEYFGPYPHA 119 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHEA 187 AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCS PC +S E+Y + V A Sbjct: 120 GAVRETLSLLQKLFPVRQCENSVYSNRSRPCLQYQIGRCSAPCVQGYVSDEEYNQQVELA 179 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMDC 244 + FL G + + + + M QA+ D+E A +RD++ A+ + + MD Sbjct: 180 RLFLQGKDQLVLDYLIGKMEQASRNLDFEQAARYRDQIQAVRSVIEKQFVSNERLDDMDI 239 Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCP 300 S+ + LAC+Q F G+ G ++F K + + +++ F+ QFY + P Sbjct: 240 MSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTETFVGQFYLQGHQGRSIP 299 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 +I++ + E S LE Q G KV I +G+K K ++ A +NA + +L Sbjct: 300 NSIIVDRQLAEKSELEQLLTDQAGRKVTIQESVKGDKSKYLQLAQVNAKAALNVQLKQSS 359 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 + LP I R+E +D SH MG V VV + G +K+ YR+FN+ Sbjct: 360 RMSERYQALCDLLNLPEIK-RMECFDISHTMGNQTVASCVVFNQEGPLKSDYRRFNIEG- 417 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 + DD A M L++R+ + ++ ++ PD++ +DGGKGQL+ A Sbjct: 418 -ITGGDDYAAMEQALQKRYERDLEEDK---------------IPDIIFIDGGKGQLNRAL 461 Query: 481 GVLKKLNVENR 491 V + L V+ Sbjct: 462 NVFQHLQVKWD 472 >gi|118575737|ref|YP_875480.1| excinuclease nuclease subunit [Cenarchaeum symbiosum A] gi|118194258|gb|ABK77176.1| excinuclease nuclease subunit [Cenarchaeum symbiosum A] Length = 531 Score = 353 bits (905), Expect = 6e-95, Method: Composition-based stats. Identities = 161/560 (28%), Positives = 256/560 (45%), Gaps = 49/560 (8%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PGVY M D ++Y+GKA +L+ R+ SY ++ ++ +I +I F +T + Sbjct: 10 VPAQPGVYLMKDSKANIIYIGKAKSLRNRVSSYFTGA-QNYKTKKLVEKIADIEFVLTDS 68 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST----IQGSY 121 E EA +LE+N+IKR +P +NI L+D + + Y+ +T ++P L R + +G Sbjct: 69 EGEAFVLESNLIKRYRPMYNIELKDQQRYTYLRVT-DEELPRLLVARRMRSGKFIGKGRI 127 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GPF + TI +L+++F +R C CL + + C PC + + Y Sbjct: 128 YGPFTHGSSKLLTIGTLRKSFKVRICKTLP----KTACLEYHLGNCEAPCEIASAKKDYA 183 Query: 182 EFVHEAKKFLSG--GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + + + L G K+ M +A+ +DYE A+ RD L L ++ Y Sbjct: 184 GHIKDLESVLKGGAETEKFATKMKDEMGRASESQDYERAMEIRDTLRRLGSLRTDQKMEY 243 Query: 240 ----NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 D F + A + + G R F +++T FL Q+YT Sbjct: 244 ARVSPDEDYFGMRVWDQSALVMSLRQVNGVIRDRDRFSFDLVADNTLG----SFLYQYYT 299 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P ++ SEE + LE + G V I P +G ++K+IE L N Sbjct: 300 THKTPRYVVTSEEPPQKGALEKALTDAAGRSVSIVSPSRGRRKKMIELILRN------ID 353 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 L + L++ + L P+ IE +D S+ AVG M + + ++ YRKF Sbjct: 354 LMQTSGTEPALEELGEALGLGGPPRTIECFDISNHGADFAVGAMSRLSDGAPDRSGYRKF 413 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 + V +DD AM+ V+ RR+ +L+ + PD+V++DGGKGQ Sbjct: 414 KIRT--VSGRDDYAMIAEVVRRRYMRLL--------------GGGGTAPDLVLIDGGKGQ 457 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 L AA G LK + RI +S+AK + E F E LVL P L ++ RD Sbjct: 458 LGAALGALK--GMAARIPCVSLAKKNE-----EVFRPGSPEPLVLPRTSPALGVLRHARD 510 Query: 536 EAHRFAITTHRKRRKKAAYS 555 EAHRF + +RK R A S Sbjct: 511 EAHRFGVEYNRKLRSMAIKS 530 >gi|308184606|ref|YP_003928739.1| excinuclease ABC subunit C [Helicobacter pylori SJM180] gi|308060526|gb|ADO02422.1| excinuclease ABC subunit C [Helicobacter pylori SJM180] Length = 594 Score = 353 bits (905), Expect = 6e-95, Method: Composition-based stats. Identities = 165/600 (27%), Positives = 275/600 (45%), Gaps = 52/600 (8%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQINNIRFTV 62 GVYQ D ++LY+GKA NL+KRIKSY ++ + RI M+ QI + + Sbjct: 16 GVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIRNNEITPNSRVSLRIQMMVKQIAFLETIL 75 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-STIQGSY 121 E +AL+LE ++IK+LKP++NILLRDDK++PYI + P R Y Sbjct: 76 VENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKILKQPGVKY 135 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPF S + ++SL L + + + C+ +QI+RC PC +I+ E+Y+ Sbjct: 136 FGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCENKITKEEYL 191 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 + E + + + + +++ M + + +E A+I+RDR+A + I Sbjct: 192 KIAKECLEMIENKDRLI-KELELKMERLSSNLRFEEALIYRDRIAKIQKIAPFTCMDLAK 250 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK- 297 +D F+ Y N A + F G+ + + + + + + + Y Sbjct: 251 LYDLDIFAFYGASNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAIINHYQSHL 310 Query: 298 PCPENILLSEEAEETSLLE--ISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P +L +L E QY K+ +++PK+G+K +IE A+ NA Sbjct: 311 PLIPEQILLNACSNEALKELQEFISHQYSKKIALSIPKKGDKLALIEIAMKNAQE--IFS 368 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 + +IL++ F L +P R+EI+D SH VG MVV + F KN YR++ Sbjct: 369 QEKTSNEDLILEEARSLFNLECVPYRVEIFDVSHHSNSQCVGGMVVYENHAFQKNSYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 +L ++ A M +L RR K P++ ++DGG+ Q Sbjct: 429 HLK-----GSNEYAQMSELLTRRALDFAKE----------------PPPNLWVIDGGRVQ 467 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLNMRDPILYF 529 L+ A +LK + + +I+I+K + G + L D L + Sbjct: 468 LNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGTKDIIHTPSNTFKLLPSDKRLQW 525 Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 +Q+LRDE+HR+AI HR + K L + GIG + LL FG+ + I ++S + Sbjct: 526 VQKLRDESHRYAINFHRSTKLKNIKQIALLKEKGIGEASVKKLLDYFGSFEAIEKASEQE 585 >gi|317012631|gb|ADU83239.1| excinuclease ABC subunit C [Helicobacter pylori Lithuania75] Length = 594 Score = 352 bits (904), Expect = 7e-95, Method: Composition-based stats. Identities = 165/600 (27%), Positives = 275/600 (45%), Gaps = 52/600 (8%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQINNIRFTV 62 GVYQ D ++LY+GKA NL+KRIKSY ++ + RI M+ QI + + Sbjct: 16 GVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIRNNEIVPNHRASLRIQMMVKQIAFLETIL 75 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-STIQGSY 121 E +AL+LE ++IK+LKP++NILLRDDK++PYI + P R Y Sbjct: 76 VENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKILKQPGVKY 135 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPF S + ++SL L + + + C+ +QI+RC PC +I+ E+Y+ Sbjct: 136 FGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEDKITKEEYL 191 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 + E + + + + +++ M + + +E A+I+RDR+A + I Sbjct: 192 KIAKECLEMIENKDKLI-KELELKMERLSNNLRFEEALIYRDRIAKIQKIAPFTCMDLAK 250 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK- 297 +D F+ Y N A + F G+ + + + + + + + Y Sbjct: 251 LYDLDIFAFYGASNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAIINHYQSHL 310 Query: 298 PCPENILLSEEAEETSLLE--ISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P +L +L E QY K+ +++PK+G+K +IE A+ NA Sbjct: 311 PLIPEQILLNACSNEALKELQEFISHQYSKKIALSIPKKGDKLALIEIAMKNAQE--IFS 368 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 + +IL++ F L +P R+EI+D SH VG MVV N F KN YR++ Sbjct: 369 QEKTSNEDLILEEARSLFNLECVPYRVEIFDTSHHSNSQCVGGMVVYENNAFQKNSYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 +L ++ M +L RR K P++ ++DGG+ Q Sbjct: 429 HLK-----GSNEYTQMSELLTRRALDFAKE----------------PPPNLWVIDGGRAQ 467 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLNMRDPILYF 529 L+ A +LK + + +I+I+K + G + + L D L + Sbjct: 468 LNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTPSDTFKLLPSDKRLQW 525 Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 +Q+LRDE+HR+AI HR + K L + GIG + LL FG+ + I ++S + Sbjct: 526 VQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEAIEKASEQE 585 >gi|86150755|ref|ZP_01068971.1| excinuclease ABC, C subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|315124706|ref|YP_004066710.1| excinuclease ABC, C subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841925|gb|EAQ59171.1| excinuclease ABC, C subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|315018428|gb|ADT66521.1| excinuclease ABC, C subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 600 Score = 352 bits (904), Expect = 7e-95, Method: Composition-based stats. Identities = 182/625 (29%), Positives = 292/625 (46%), Gaps = 55/625 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54 + +P GVYQ + G++LYVGKA NL+ R+KSY + ++ RI MI + Sbjct: 9 ELKTLPNSTGVYQYFNQEGKLLYVGKAKNLKNRVKSYFAFTPNLHANPRNSLRIQKMIEE 68 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD- 113 ++ F T +E +AL+LE + IK+L P++NILLRDDK++PYI + + + P R Sbjct: 69 TIHLEFIATNSEADALILENSFIKQLHPKYNILLRDDKTYPYIYVDFEEEFPRFEITRKL 128 Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 + YFGPF + +++L + L+ A PC+ +QI RC PC Sbjct: 129 VKKSKIKYFGPF--FKGARELLDALYLYYPLKQKASC-----KSPCIFYQISRCLAPCDK 181 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 IS EKY+E + EA L + L + + + M E+YE A RD++A + ++ Sbjct: 182 LISKEKYLEILDEAIHALLNPSVLL-KNLEKQMLVLAQNENYEEAAKVRDQIAMIKDLEV 240 Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNR--GTCTFFLKTDSESTNAQILSY 288 + + F+L ++ G+ + +K D + +I Sbjct: 241 KVEIDIAKLEDFEVFALAFKNSVLSTLRFVVQNGKIISANSKITPIKNDIQWDKNEIYKQ 300 Query: 289 FLRQFYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 + + ++ I + EE E+ LLE +++ K+ I +PK GEKR+I + A Sbjct: 301 LILENFSMDIPLLANVIYVYEEFEDRVLLEEILSQRFDKKISIKIPKIGEKRRICDLAFQ 360 Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 NA + + I K+ F L ++P IEI+DNSH+ G + VG MV N Sbjct: 361 NALLNIE--KEQKNHDFTIQKELKFYFELENLPNDIEIFDNSHLQGVANVGAMVTYRINS 418 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 + K++YRKF+L ++D MR VL R + ++ PD+ Sbjct: 419 WDKSKYRKFHLK-----HKNDYDQMREVLTR----------------RALDFDKIPPPDL 457 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNM 522 ++DGGK L A+ ++ I IS AK + G + L++ Sbjct: 458 WLIDGGKALLDLAKEIIVSSGANVDILAISKEKIDAKAHRAKGGAKDKIHSLKGEFSLSI 517 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--SPLDEINGIGPLRKRLLLQSFGTVKM 580 D L F+Q+LRDEAHRFAI+ H+ +KK S L + G+ + LL +G + Sbjct: 518 NDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLNSSKLVNL-GLSSGVIQKLLAYYGNFES 576 Query: 581 ISRSSPETLASIEGISKKIACKIYN 605 I ++ + LA + G KK A KI Sbjct: 577 IYKADFKDLAMLVG--KKAAQKIKE 599 >gi|326780018|ref|ZP_08239283.1| excinuclease ABC, C subunit [Streptomyces cf. griseus XylebKG-1] gi|326660351|gb|EGE45197.1| excinuclease ABC, C subunit [Streptomyces cf. griseus XylebKG-1] Length = 755 Score = 352 bits (904), Expect = 7e-95, Method: Composition-based stats. Identities = 134/476 (28%), Positives = 233/476 (48%), Gaps = 16/476 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 Q+P+ PGVY+ D RV+YVGKA NL++R+ +Y N R M++ ++ + Sbjct: 10 KPGQIPDSPGVYKFRDEHRRVIYVGKAKNLRQRVANYFQDLANLHPRTRTMVTTAASVEW 69 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TEVEAL LE + IK PRFN+ RDDKS+PY+ +T + P + R + Sbjct: 70 TVVSTEVEALQLEYSWIKEFDPRFNVKYRDDKSYPYLAVTLNEEFPRVQVMRGAKKKGVR 129 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP+ A+ +T++ + R F +R+C+ VF++ RPCLL I +CS PC G ++ Sbjct: 130 YFGPYGHAWAIRETVDLMLRVFPVRTCSAGVFKNAARTGRPCLLGYIGKCSAPCVGRVTP 189 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E++ E + F++G ++ ++M QA + +YE A RD AL + Sbjct: 190 EEHRELAEDFCDFMAGRTGTYIRRLEKDMMQAAEEMEYERAARLRDDAEALKRAMEKSAV 249 Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D ++ ++ A +Q G+ RG + + ++ + L+Q Y Sbjct: 250 VLADATDADLIAVAEDELEAALQIFHVRGGRVRGQRGWVTDKVEAVDTSGLVEHALQQLY 309 Query: 295 TDK---PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 ++ P+ +L+ E+ + + G +V + +P++G+K+ ++ NA ++ Sbjct: 310 GEERGDAVPKEVLVPALPEDPEAVSQWLADRRGSQVSLRIPQRGDKKDLMATVQRNAQQA 369 Query: 352 HTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 + S L++ + L P RIE YD SH+ G V MVV + Sbjct: 370 LGLHKTKRASDLTTRSRALEEIAEALGLDTAPLRIECYDISHLQGDDVVASMVVFEDGLA 429 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSW 463 K++YR+F + + QDD M V+ RRF + ++++E + QE + + Sbjct: 430 RKSEYRRFQIKG--FEGQDDVRSMHEVIGRRFKRYLQDKERTGEWEEAQEAAPGAP 483 Score = 204 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 51/160 (31%), Positives = 91/160 (56%), Gaps = 7/160 (4%) Query: 445 NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRS 504 ++E + F P +V++DGG+ Q++AA+ L +L +++ I + +AK + Sbjct: 572 DDEPEPREDDGRPKRFAYPPQLVVVDGGQPQVAAARRALDELGIDD-IAVCGLAKRLE-- 628 Query: 505 AGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYS-PLDEINGI 563 E + + +VL LY +QR+RDEAHRFAIT R +R K S PLD++ G+ Sbjct: 629 ---EVWLPDDDDPVVLPRSSEGLYLLQRVRDEAHRFAITYQRAKRAKRIRSSPLDDVTGL 685 Query: 564 GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 G RK+ L++ FG+VK + +++ + + + GI ++ A + Sbjct: 686 GETRKQALIKHFGSVKKLRQATIDEICEVPGIGRRTAESV 725 >gi|57238119|ref|YP_179369.1| excinuclease ABC subunit C [Campylobacter jejuni RM1221] gi|81353442|sp|Q5HTL6|UVRC_CAMJR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|57166923|gb|AAW35702.1| excinuclease ABC, C subunit [Campylobacter jejuni RM1221] gi|315058679|gb|ADT73008.1| Excinuclease ABC subunit C [Campylobacter jejuni subsp. jejuni S3] Length = 600 Score = 352 bits (904), Expect = 8e-95, Method: Composition-based stats. Identities = 179/625 (28%), Positives = 291/625 (46%), Gaps = 55/625 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54 + +P GVYQ + G++LYVGKA NL+ R+KSY + ++ RI MI + Sbjct: 9 ELKTLPNSAGVYQYFNQEGKLLYVGKAKNLKNRVKSYFAFTPNLHANPRNSLRIQKMIEE 68 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD- 113 ++ F T +E +AL+LE + IK+L P++NILLRDDK++PYI + + + P R Sbjct: 69 TVHLEFIATNSEADALILENSFIKQLHPKYNILLRDDKTYPYIYVDFEEEFPRFEITRKL 128 Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 + YFGPF + +++L + L+ A PC+ +QI RC PC Sbjct: 129 VKKSKIKYFGPF--FKGARELLDALYLYYPLKQKASC-----KSPCIFYQISRCLAPCDK 181 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 IS EKY+E + EA L + L + + + M E+YE A RD++A + ++ Sbjct: 182 LISREKYLEILDEAIHALLNPSVLL-KNLEKQMLVLAQNENYEEAAKVRDQIAMIKDLEV 240 Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNR--GTCTFFLKTDSESTNAQILSY 288 + + F+L ++ G+ + ++ D + +I Sbjct: 241 KVEIDIAKLEDFEVFALAFKNSVLSTLRFVVQNGKIISANSKITPIRNDIQWDQNEIYKQ 300 Query: 289 FLRQFYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 + + ++ I + EE E+ LLE +++ K+ I +PK GEKR+I + A Sbjct: 301 LILENFSMDIPLLANVIYVYEEFEDRVLLEEILSQRFDKKISIKIPKIGEKRRICDLAFQ 360 Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 NA + + I K+ F L ++P IEI+DNSH+ G + VG MV N Sbjct: 361 NALLNIE--KEQKNHDFTIQKELKFYFELENLPNDIEIFDNSHLQGVANVGAMVTYRINS 418 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 + K++YRKF+L ++D MR VL R + ++ PD+ Sbjct: 419 WDKSKYRKFHLK-----HKNDYDQMREVLTR----------------RALDFDKIPPPDL 457 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNM 522 ++DGGK L A+ ++ I IS AK + G + L++ Sbjct: 458 WLIDGGKALLDLAKEIIVSSGANVDILAISKEKIDAKAHRAKGGAKDKIHSLKGEFSLSI 517 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKA--AYSPLDEINGIGPLRKRLLLQSFGTVKM 580 D L F+Q+LRDEAHRFAI+ H+ +KK S L + G+ + LL +G + Sbjct: 518 NDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLKSSKLANL-GLSSGVIQKLLAYYGNFES 576 Query: 581 ISRSSPETLASIEGISKKIACKIYN 605 I ++ + L + G +K A KI Sbjct: 577 IYKADFKDLTMLVG--RKAAQKIKE 599 >gi|331703264|ref|YP_004399951.1| Excinuclease ABC subunit C [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801819|emb|CBW53972.1| Excinuclease ABC subunit C [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 584 Score = 352 bits (904), Expect = 8e-95, Method: Composition-based stats. Identities = 151/611 (24%), Positives = 275/611 (45%), Gaps = 35/611 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P PG Y + V+YVGKA NL+KR+ +Y + + + T ++ +I ++++ Sbjct: 6 QVDLLPNKPGCYLFFNKDNDVIYVGKAKNLKKRVSTYFNKA-YNIKTTRLVREITDLKYF 64 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 + E E+LLLE N+IK+ P++N+LL DDK++PYI+IT++ P R Sbjct: 65 IVDNEKESLLLEKNLIKKYHPKYNVLLNDDKTYPYIIITNQKD-PMYKYVRKYDKKALKN 123 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GP + +LQR F LR C ++ +PCL + + +CSG C ++ Y Sbjct: 124 YGPLPIGSNARSILLTLQRLFPLRMCQGNL----NKPCLYYHLNQCSGACFKQVDPSYYE 179 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + + KF G + +K+ + + M +A+ +E A +D++ +L I + Sbjct: 180 YQIKQVDKFFKGEINQVKQTLIKQMQKASDNLQFEQAQRIKDQITSLDFITAKQNVDIVT 239 Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 +D + N++ C F+ GQ + D +++ + +L+Q Y Sbjct: 240 NKNIDVVNYEINQDKICFVMLFYRLGQLTYKDEYIQNYD-GQNLSELFNSYLQQIYQKNI 298 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P+ +L+ E E L + K ++ +L + SH Sbjct: 299 YPDILLIPNEIELLDLDQNLLEFSSYSLDKQDDVFIKLAKQNAIDSLNKSVISHNVNSGD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E IL+ + KRIE++D S+I G +V ++N++RK+N+ Sbjct: 359 E---IEILEQLKQISNASKYLKRIEVFDISNIYNQFITGACIVYINAKPIRNEFRKYNID 415 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 P+ D A M+ +LE+RF + IK +E L PD++I+DGG Q+ A Sbjct: 416 PSYT---SDYARMKFMLEKRFLKQIKEKEQL--------------PDLIIVDGGIIQIHA 458 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ VL KLN+ +I +I ++K + + + + + F+ L+ Sbjct: 459 AKEVLNKLNL--KIDVIGLSKDDHHKTRYLIDIFE--QTIDIKNFKKLYNFLTSLQIRVD 514 Query: 539 RFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 +A + RK+ + I G+G L + F T+ I +S + L + +KK Sbjct: 515 EYAKSGFRKKYHNQLNDQILLIKGVGKKTNLKLYKHFKTIDNIKNASFDELNKVIN-NKK 573 Query: 599 IACKIYNHFHK 609 I I ++ +K Sbjct: 574 ITNLIISNLNK 584 >gi|325923855|ref|ZP_08185460.1| Excinuclease ABC subunit C [Xanthomonas gardneri ATCC 19865] gi|325545660|gb|EGD16909.1| Excinuclease ABC subunit C [Xanthomonas gardneri ATCC 19865] Length = 481 Score = 352 bits (904), Expect = 9e-95, Method: Composition-based stats. Identities = 175/478 (36%), Positives = 261/478 (54%), Gaps = 19/478 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+ PGVY+M +LYVGKA L+KR+ SY + R+T M+SQ+ + TVT Sbjct: 17 QLSTAPGVYRMYAGDDTLLYVGKAGALRKRVGSYFNGTPKNARLTSMLSQVARMDVTVTR 76 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE +IK L PR+N+ LRDDKS+PY+L+T + P + HR +QG YFGP Sbjct: 77 SEAEALLLENQLIKSLSPRYNVSLRDDKSYPYVLLT-REDWPRIALHRGPRAVQGRYFGP 135 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + V V +T++ + + F LRSC DSVFR+R+RPCL +QI RCS PC +++ Y E V Sbjct: 136 YTGVTGVRETLSLMHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSAPCVDLVAAPDYAESV 195 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242 A FL G + L E+I ++M QA+ ++E A RD L++L +QN + Sbjct: 196 RRATMFLEGKSDQLGEEIMQSMQQASEALEFERAARLRDLLSSLRSMQNRQYVDGRAADL 255 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D + + AC+ F G+N GT +FF KT+ E + +IL F+ Q+Y + P Sbjct: 256 DVLACATQASQACVLLLSFRDGRNLGTRSFFPKTNGEDSADEILGAFVSQYYAEHSPPRE 315 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 ILL E + L+E + YKV + +GE+ + A NA + +L+++ + Sbjct: 316 ILLDREIPDAELIEAALSSAAEYKVTLKWNVRGERAGYLLLATRNAQLTLVTELTSQSAQ 375 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 + L KR+E +D SH MG + V VV +G V+ QYR+FN+ + + Sbjct: 376 HARSEALRDMLGLAEQVKRVECFDISHTMGEATVASCVVFDASGPVRGQYRRFNI--SGI 433 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 DD A MR +ERRF + ++ PDV+++DGG GQL+ A+ Sbjct: 434 TPGDDYAAMRQAIERRFRRAVEEN--------------GVLPDVLLIDGGAGQLAQAK 477 >gi|182439362|ref|YP_001827081.1| excinuclease ABC subunit C [Streptomyces griseus subsp. griseus NBRC 13350] gi|229557865|sp|B1W0Y8|UVRC_STRGG RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|178467878|dbj|BAG22398.1| putative excinuclease ABC subunit C [Streptomyces griseus subsp. griseus NBRC 13350] Length = 717 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 134/475 (28%), Positives = 232/475 (48%), Gaps = 16/475 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 Q+P+ PGVY+ D RV+YVGKA NL++R+ +Y N R M++ ++ + Sbjct: 10 KPGQIPDSPGVYKFRDEHRRVIYVGKAKNLRQRVANYFQDLANLHPRTRTMVTTAASVEW 69 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TEVEAL LE + IK PRFN+ RDDKS+PY+ +T + P + R + Sbjct: 70 TVVSTEVEALQLEYSWIKEFDPRFNVKYRDDKSYPYLAVTLNEEFPRVQVMRGAKKKGVR 129 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP+ A+ +T++ + R F +R+C+ VF++ RPCLL I +CS PC G ++ Sbjct: 130 YFGPYGHAWAIRETVDLMLRVFPVRTCSAGVFKNAARTGRPCLLGYIGKCSAPCVGRVTP 189 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E++ E + F++G ++ ++M QA + +YE A RD AL + Sbjct: 190 EEHRELAEDFCDFMAGRTGTYIRRLEKDMMQAAEEMEYERAARLRDDAEALKRAMEKSAV 249 Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D ++ ++ A +Q G+ RG + + ++ + L+Q Y Sbjct: 250 VLADATDADLIAVAEDELEAALQIFHVRGGRVRGQRGWVTDKVEAVDTSGLVEHALQQLY 309 Query: 295 TDK---PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 ++ P+ +L+ E+ + + G +V + +P++G+K+ ++ NA ++ Sbjct: 310 GEERGDAVPKEVLVPALPEDPEAVSQWLADRRGSQVSLRIPQRGDKKDLMATVQRNAQQA 369 Query: 352 HTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 + S L++ + L P RIE YD SH+ G V MVV + Sbjct: 370 LGLHKTKRASDLTTRSRALEEIAEALGLDTAPLRIECYDISHLQGDDVVASMVVFEDGLA 429 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPS 462 K++YR+F + + QDD M V+ RRF + ++++E + E + S Sbjct: 430 RKSEYRRFQIKG--FEGQDDVRSMHEVIGRRFKRYLQDKERTGEWEEAPEAAPGS 482 Score = 204 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 51/160 (31%), Positives = 91/160 (56%), Gaps = 7/160 (4%) Query: 445 NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRS 504 ++E + F P +V++DGG+ Q++AA+ L +L +++ I + +AK + Sbjct: 534 DDEPEPREDDGRPKRFAYPPQLVVVDGGQPQVAAARRALDELGIDD-IAVCGLAKRLE-- 590 Query: 505 AGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYS-PLDEINGI 563 E + + +VL LY +QR+RDEAHRFAIT R +R K S PLD++ G+ Sbjct: 591 ---EVWLPDDDDPVVLPRSSEGLYLLQRVRDEAHRFAITYQRAKRAKRIRSSPLDDVTGL 647 Query: 564 GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 G RK+ L++ FG+VK + +++ + + + GI ++ A + Sbjct: 648 GETRKQALIKHFGSVKKLRQATIDEICEVPGIGRRTAESV 687 >gi|42560845|ref|NP_975296.1| excinuclease ABC subunit C [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|81400734|sp|Q6MTU8|UVRC_MYCMS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|42492341|emb|CAE76938.1| excinuclease ABC subunit C [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301321156|gb|ADK69799.1| excinuclease ABC, C subunit [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 584 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 150/611 (24%), Positives = 276/611 (45%), Gaps = 35/611 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P PG Y + V+YVGKA NL+KR+ +Y + + + T ++ +I ++++ Sbjct: 6 QVDLLPNKPGCYLFFNKDNDVIYVGKAKNLKKRVSTYFNKA-YNIKTTRLVREITDLKYF 64 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 + E E+LLLE N+IK+ P++N+LL DDK++PYI+IT++ P R Sbjct: 65 IVDNEKESLLLEKNLIKKYHPKYNVLLNDDKTYPYIIITNQKD-PMYKYVRKYDKKALKN 123 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GP + +LQR F LR C ++ +PCL + + +CSG C ++ Y Sbjct: 124 YGPLPIGSNARSILLTLQRLFPLRMCQGNL----NKPCLYYHLNQCSGACFKQVDPSYYE 179 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + + KF G + +K+ + + M +A+ +E A +D++ +L I + Sbjct: 180 YQIKQVDKFFKGEINQVKQTLVKQMQKASDNLQFEQAQRIKDQITSLDFITAKQNVDIVT 239 Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 +D + N++ C F+ GQ +++ +++ + +L+Q Y Sbjct: 240 NKNIDVVNYEINQDKICFVILFYRLGQLTYKD-EYIQNYEGQNLSELFNSYLQQIYQKNI 298 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P+ +L+ E E L + K ++ +L + SH Sbjct: 299 YPDVLLIPNEIELLDLDQNLLEFSSYSLNKQDDVFIKLAKQNAIDSLNKSVISHNVNSGD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E IL+ + KRIE++D S+I G +V ++N++RK+N+ Sbjct: 359 E---IEILEQLKQISNASKYLKRIEVFDISNIYSQFITGACIVYINAKPIRNEFRKYNID 415 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 P+ D + M+ +LE+RF + IK +E L PD+VI+DGG Q+ A Sbjct: 416 PSYT---SDFSRMKFMLEKRFLKQIKEKEQL--------------PDLVIVDGGIIQIHA 458 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ VL KLN+ +I +I ++K + + + + + F+ L+ Sbjct: 459 AKEVLNKLNL--KIDVIGLSKDDHHKTRYLIDIFE--QTIDIKNFKKLYNFLTSLQIRVD 514 Query: 539 RFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 +A + RK+ + I G+G L + F T+ I +S + L + +KK Sbjct: 515 EYAKSGFRKKYHNQLNDQILLIKGVGKKTNLKLYKHFKTIDNIKNASFDELNKVIN-NKK 573 Query: 599 IACKIYNHFHK 609 I I ++ +K Sbjct: 574 ITNLIISNLNK 584 >gi|32265518|ref|NP_859550.1| excinuclease ABC subunit C [Helicobacter hepaticus ATCC 51449] gi|81666616|sp|Q7VK73|UVRC_HELHP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|32261566|gb|AAP76616.1| excinuclease ABC subunit C [Helicobacter hepaticus ATCC 51449] Length = 621 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 162/625 (25%), Positives = 265/625 (42%), Gaps = 66/625 (10%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQIN 56 +P G+YQ D +LYVGKA NL+ RIKSY+ NN + RI M+SQI Sbjct: 17 DLPTQSGIYQFFDNEDTLLYVGKAKNLKNRIKSYLSIENKHIVPKNNLSPRIALMVSQIT 76 Query: 57 NIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-S 115 I +T E +AL+LE ++IK LKP++NILLRDDK++PYI I P R Sbjct: 77 RIHTLLTNNEQDALILENSLIKSLKPKYNILLRDDKTYPYIYIDKSLPYPRFELTRQVLK 136 Query: 116 TIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEI 175 + Q YFGPF S + ++SL L V + C+ QI +C PC ++ Sbjct: 137 SNQIQYFGPFVSG--ARELLDSLYDNLPLVQKKSCV--KGKKACIFHQIHKCPAPCENKV 192 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 S + Y + + + + L + + M+ + +E A I RDR+ ++ ++N + Sbjct: 193 SIQTYAQTIAQGIALIEDKKALL-KILESKMHTLSHNLQFEEAAIMRDRIQKITQMKNQS 251 Query: 236 DSIYNRMDCFSLYHNKNLA------------------CIQTCFFHFGQNRGTCTFFLKTD 277 D + + F G+ + L D Sbjct: 252 IIDMMSGDYDVFVLQEQDCGKNSQDSHKKSHTALHTHILMMLFIRNGRIISSDFILLHDD 311 Query: 278 --SESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFF--KQYGYKVKITVPK 333 S + L + T P +L + LL + +Q +KI P+ Sbjct: 312 IQSHNLPQLYTQALLNHYKTQIPLLPQEILIPPFDFPDLLHLQQLLREQTRSSLKIVQPQ 371 Query: 334 QGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGC 393 +G K+ +++ A NA + + + L + L IP IE++D SH G Sbjct: 372 RGAKKDLLQLAHKNALEIRRLH-TQQNNTFSTLVSIKELCVLSQIPYSIEVFDTSHHSGT 430 Query: 394 SAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP 453 VG M+V + F++++YR++ LH + D+ + M +L R Sbjct: 431 HNVGGMIVYENDDFIRSKYRRYELHTS-----DEYSQMHEMLLR---------------- 469 Query: 454 KKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGM 507 + Q + P + +LDGG+ Q++ A +LK + + +++IAK Sbjct: 470 RAQSFDSNPPPALWLLDGGRAQINLALDILKSVG--ANVEVLAIAKMKHNAKAYRAKGNA 527 Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLR 567 K L D L F+Q+LRDE HR+AIT HR +++K + Sbjct: 528 FDILRSKNAEFKLKPNDKRLQFLQKLRDEVHRYAITYHRYKKQKDIQKAQMMGKNYTQAQ 587 Query: 568 KRLLLQSFGTVKMISRSSPETLASI 592 + LL FG+ + + +S E + S+ Sbjct: 588 IKKLLDYFGSFESLKTASQEQINSV 612 >gi|153951039|ref|YP_001397665.1| excinuclease ABC subunit C [Campylobacter jejuni subsp. doylei 269.97] gi|189038033|sp|A7H2D5|UVRC_CAMJD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|152938485|gb|ABS43226.1| excinuclease ABC, C subunit [Campylobacter jejuni subsp. doylei 269.97] Length = 600 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 183/625 (29%), Positives = 291/625 (46%), Gaps = 55/625 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54 + +P GVY+ + G++LYVGKA NL+ R+KSY + ++ RI MI + Sbjct: 9 ELKTLPNSAGVYEYFNQEGKLLYVGKAKNLKNRVKSYFAFTPNLHANPGNSLRIQKMIQE 68 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD- 113 ++ F T +E +AL+LE + IK+L P++NILLRDDK++PYI + K + P R Sbjct: 69 TVHLEFITTNSEADALILENSFIKQLHPKYNILLRDDKTYPYIYVDFKEEFPRFEITRKL 128 Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 + YFGPF + +++L + L+ A PC+ +QI RC PC Sbjct: 129 VKKSKIKYFGPF--FKGARELLDALYLYYPLKQKASC-----KSPCIFYQISRCLAPCDK 181 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 IS EKY E + EA L + L + + + M E+YE A RD++A + ++ Sbjct: 182 RISKEKYREILDEAMHALLNPSVLL-KNLEKQMLVLAQNENYEEAAKIRDQIATIKDLEV 240 Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNR--GTCTFFLKTDSESTNAQILSY 288 + + F+L ++ G+ + +K D + +I Sbjct: 241 KVEIDIAKLEDFEVFALAFKNSMLSTLRFVVQNGKIISVNSKITPIKNDIQWDKNEIYKQ 300 Query: 289 FLRQFYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 + + ++ I + EE E+ LLE +++ K+ I +PK GEKRKI + A Sbjct: 301 LILENFSMDIPLLASVIYVYEEFEDRMLLEKILSQRFDKKISIKIPKIGEKRKICDLAFQ 360 Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 NA + + I K+ F L ++P IEI+DNSH+ G + VG MV N Sbjct: 361 NALLNIE--KEQKNHDFTIQKELKSYFELENLPNDIEIFDNSHLQGVANVGAMVTYSVNS 418 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 + K++YRKF+L ++D MR VL R + ++ PD+ Sbjct: 419 WDKSKYRKFHLK-----HKNDYDQMREVLTR----------------RALDFDKIPPPDL 457 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNM 522 ++DGGK L A+ ++ I IS AK + G + L++ Sbjct: 458 WLIDGGKVLLDLAKEIILSTGANVDILAISKEKIDAKAHRAKGGAKDKIHSLKGEFSLSV 517 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKA--AYSPLDEINGIGPLRKRLLLQSFGTVKM 580 D L F+Q+LRDEAHRFAI+ H+ +KK S L + G+ + LL +G + Sbjct: 518 NDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLKSSKLANL-GLSLGVIQKLLAYYGNFES 576 Query: 581 ISRSSPETLASIEGISKKIACKIYN 605 I ++ + LA + G KK A KI Sbjct: 577 IYKADFKDLAMLVG--KKAAQKIKE 599 >gi|315638966|ref|ZP_07894137.1| excision endonuclease subunit UvrC [Campylobacter upsaliensis JV21] gi|315480995|gb|EFU71628.1| excision endonuclease subunit UvrC [Campylobacter upsaliensis JV21] Length = 595 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 190/621 (30%), Positives = 299/621 (48%), Gaps = 55/621 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH------SNNHTHRITHMISQINNI 58 +PE GVYQ + G++LYVGKA NL+KR+KSY ++ ++ RI MI++ ++ Sbjct: 8 SLPESAGVYQYFNKEGKLLYVGKAKNLKKRVKSYFSFNPLRANSKNSLRIQKMINEAAHL 67 Query: 59 RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHR-DSSTI 117 +F T TE AL+LE ++IK+L P++NILLRDDK++PYI I K P R Sbjct: 68 KFISTKTEANALILENSLIKQLHPKYNILLRDDKTYPYIYIDLNEKFPRFELTRKIIKKP 127 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 + Y+GPF ++ +N+L + L+ + + C+ QI RCSG C IS Sbjct: 128 KIKYYGPF--FKGAKELLNALYLYYPLKQKKNC-----KKLCIFHQISRCSGVCENLISE 180 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E Y E + A K L + + + + + M + E+YE A RD + A+ ++ Sbjct: 181 ENYKEILANATKALLNPSLLI-KNLEQAMLKYAHNENYEEAGKVRDEINAIKALETKVQI 239 Query: 238 ---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCT--FFLKTDSESTNAQILSYFLRQ 292 + F+L + G+ T + LK +TN L Sbjct: 240 DLARLEDFEIFALASENGICSTLRFIIQEGKIISTHSKIHILKEKEINTNEIYKQVLLES 299 Query: 293 FYTDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 F D P I + ++ E+ LLE +++ K+ I VP++GEKRKI + A NA + Sbjct: 300 FNQDSPLVSNQIYVYKDFEDRKLLEELLSERFAKKIHIQVPQKGEKRKICDLAFENALLN 359 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 L + + ++++ F L ++P IEIYDNSH+ G + VG MV + + K Sbjct: 360 INIHL--KNNDLSLMEELKHYFELENVPHCIEIYDNSHLQGVAKVGAMVCFKDGKWEKKH 417 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YRKF+L + + D M+ VL R + +++ S PD+ ++DG Sbjct: 418 YRKFHL-----QGKSDYEQMKEVLIR----------------RTKDFESLSPPDLWLIDG 456 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGP-----KRSAGMEKFFVKKGEALVLNMRDPI 526 GK L A ++K + IS K + + +K KKGE +L D Sbjct: 457 GKALLDLANNIIKSTGANVDVLAISKEKIDFKAQRSKGSARDKIHSKKGE-FLLKTDDKK 515 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKKA--AYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 L F+Q+LRDEAHRFA++ H+ +KK S L + GI + LL +G + I + Sbjct: 516 LQFLQKLRDEAHRFALSFHKNTKKKQDLKSSKLLNL-GISEGYLQKLLAFYGDFESIYEA 574 Query: 585 SPETLASIEGISKKIACKIYN 605 + E L + + KIA KI + Sbjct: 575 NYEELKMLT--NAKIAQKIKD 593 >gi|330885590|gb|EGH19739.1| excinuclease ABC subunit C [Pseudomonas syringae pv. glycinea str. race 4] Length = 447 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 155/463 (33%), Positives = 243/463 (52%), Gaps = 22/463 (4%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D +LYVGKA NL+KR+ SY H + ++S+I I T+T E EALLLE Sbjct: 1 MFDAEATLLYVGKAKNLKKRLASYFRKTGHAPKTGALVSRIAQIETTITGNETEALLLEQ 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 +IK +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S A+ ++ Sbjct: 61 TLIKEWRPPYNILLRDDKSYPYVFLSDG-NYPRLSIHRGAKKAKGRYFGPYPSAGAIRES 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194 ++ LQ+TF +R C DS F++RTRPCL +QIKRC GPC G + E Y E V + FL G Sbjct: 120 LSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSVMFLEGR 179 Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFSLYHNKN 252 ++ L +++ M +A + D+E A RD++A L +Q+ +D + + N Sbjct: 180 SNALSDELNATMEKAAMALDFERAAELRDQVALLRRVQDQQSMDGGTGDVDVVAAFVNPG 239 Query: 253 LACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENILLSEEA 309 AC+ G+ G+ FF + E +++S FL Q++ D+ P ++++ Sbjct: 240 GACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAFLAQYFLGGIDRELPGEVIVNVIN 299 Query: 310 EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDF 369 ++ + + G ++ I+ +G + + + A+ NA ++ T +L+ + Sbjct: 300 DDFPAFVDAVEELRGVEMVISHRVRGTRARWQQMAVTNAEQALTARLANRQHVASRFEAL 359 Query: 370 TKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCA 429 K L P R+E YD SH G + V VV G G +K+ YR+FN+ V DD A Sbjct: 360 AKVLGLEDPPMRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VTAGDDYA 417 Query: 430 MMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472 M L RR+S++ E L PDV+++DGG Sbjct: 418 AMHQALTRRYSRIKAGEGKL--------------PDVLLVDGG 446 >gi|325996102|gb|ADZ51507.1| Excinuclease ABC subunit C [Helicobacter pylori 2018] Length = 594 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 168/600 (28%), Positives = 274/600 (45%), Gaps = 52/600 (8%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQINNIRFTV 62 GVYQ D ++LY+GKA NL+KRIKSY + + R+ M+ QI + + Sbjct: 16 GVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIRNNEITPNPRASLRVQMMVKQIAFLETIL 75 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-STIQGSY 121 E +AL+LE ++IK+LKP++NILLRDDK++PYI + P R Y Sbjct: 76 VENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKILKQPGVKY 135 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPF S + ++SL L + + + C+ +QI+RC PC +I+ E+Y+ Sbjct: 136 FGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEDKITKEEYL 191 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 + E + + + + +++ M + + +E A+I+RDR+A + I Sbjct: 192 KIAKECLEMIENKDRLI-KELELKMERLSSNLRFEEALIYRDRIAKIQKIAPFTCMDLAK 250 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 +D F+ Y N A + F G+ + + + + + + + Y Sbjct: 251 LYDLDIFAFYGGNNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAIINHYQSHL 310 Query: 299 C--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 PE ILLS E L+ QY K+ + +PK+G+K +IE A+ NA Sbjct: 311 PLMPEQILLSACSNETLKELQEFISHQYSKKIVLNIPKKGDKLALIEIAMKNAQE--IFS 368 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 S IL++ F L +P R+EI+D SH VG MVV N F K+ YR++ Sbjct: 369 QEKTSSEDRILEEARSLFNLECVPYRVEIFDTSHHSNSQCVGGMVVYENNVFQKDSYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 +L ++ M +L RR K P++ ++DGG+ Q Sbjct: 429 HLK-----GSNEYDQMSELLTRRALDFAKE----------------PPPNLWVIDGGRAQ 467 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLNMRDPILYF 529 L+ A +LK + + +I+I+K + G + L D L + Sbjct: 468 LNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDVIHTISNTFKLLPSDKRLQW 525 Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 +Q+LRDE+HR+AI HR + K L + GIG + LL FG+ + I ++S + Sbjct: 526 VQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEAIEKASEQE 585 >gi|307637513|gb|ADN79963.1| Excinuclease ABC subunit C [Helicobacter pylori 908] gi|325997698|gb|ADZ49906.1| Excinuclease ABC subunit C [Helicobacter pylori 2017] Length = 594 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 168/600 (28%), Positives = 274/600 (45%), Gaps = 52/600 (8%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQINNIRFTV 62 GVYQ D ++LY+GKA NL+KRIKSY + + R+ M+ QI + + Sbjct: 16 GVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIRNNEITPNPRASLRVQMMVKQIAFLETIL 75 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-STIQGSY 121 E +AL+LE ++IK+LKP++NILLRDDK++PYI + P R Y Sbjct: 76 VENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKILKQPGVKY 135 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPF S + ++SL L + + + C+ +QI+RC PC +I+ E+Y+ Sbjct: 136 FGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEDKITKEEYL 191 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 + E + + + + +++ M + + +E A+I+RDR+A + I Sbjct: 192 KIAKECLEMIENKDRLI-KELELKMERLSSNLRFEEALIYRDRIAKIQKIAPFTCMDLAK 250 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 +D F+ Y N A + F G+ + + + + + + + Y Sbjct: 251 LYDLDIFAFYGGNNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAIINHYQSHL 310 Query: 299 C--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 PE ILLS E L+ QY K+ + +PK+G+K +IE A+ NA Sbjct: 311 PLMPEQILLSACSNETLKELQEFISHQYSKKIVLNIPKKGDKLALIEIAMKNAQE--IFS 368 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 S IL++ F L +P R+EI+D SH VG MVV N F K+ YR++ Sbjct: 369 QEKTSSEDRILEEARSLFNLECVPYRVEIFDTSHHSNSQCVGGMVVYENNAFQKDSYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 +L ++ M +L RR K P++ ++DGG+ Q Sbjct: 429 HLK-----GSNEYDQMSELLTRRALDFAKE----------------PPPNLWVIDGGRAQ 467 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLNMRDPILYF 529 L+ A +LK + + +I+I+K + G + L D L + Sbjct: 468 LNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDVIHTISNTFKLLPSDKRLQW 525 Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 +Q+LRDE+HR+AI HR + K L + GIG + LL FG+ + I ++S + Sbjct: 526 VQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEAIEKASEQE 585 >gi|317009168|gb|ADU79748.1| excinuclease ABC subunit C [Helicobacter pylori India7] Length = 594 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 169/600 (28%), Positives = 278/600 (46%), Gaps = 52/600 (8%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQINNIRFTV 62 GVYQ D ++LY+GKA NL+KRIKSY ++ + RI M+ QI + + Sbjct: 16 GVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIRNNEITPNHRASLRIQMMVKQIAFLETIL 75 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-STIQGSY 121 E +AL+LE ++IK+LKP++NILLRDDK++PYI + P R Y Sbjct: 76 VENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKILKQPGVKY 135 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPF S + ++SL L + + + C+ +QI+RC PC +I+ E+Y+ Sbjct: 136 FGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCENKITKEEYL 191 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 + E + + + + +++ M + + +E A+I+RDR+A + I Sbjct: 192 KIAKECLEMIENKDRLI-KELELKMERLSNNLRFEEALIYRDRIAKIQKIAPFTCMDLAK 250 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 +D F+ Y N A + F G+ + + + + + + + Y Sbjct: 251 LYDLDIFAFYGASNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAIINHYQSHL 310 Query: 299 C--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 PE ILL+ E L+ QY K+ +++PK+G+K +IE A+ NA Sbjct: 311 PLMPEQILLNACSNETLKELQEFISHQYSKKIALSIPKKGDKLALIETAMKNAQE--IFS 368 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 + +IL++ F L +P R+EI+D SH VG MVV N F K+ YR++ Sbjct: 369 QEKTSNEDLILEEARSLFKLECMPYRVEIFDTSHHANSQCVGGMVVYENNAFQKDSYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 +L D+ A M +L RR K P++ ++DGG+ Q Sbjct: 429 HLK-----GSDEYAQMSELLTRRALDFAKE----------------PPPNLWVIDGGRAQ 467 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLNMRDPILYF 529 L+ A +LK + + +I+I+K + G + L D L + Sbjct: 468 LNIALEILKSSG--SFVEVIAISKEKRDSKAYRAKGGAKDIIHTSTNTFKLLPSDKRLQW 525 Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 +Q+LRDE+HR+AI HR + K L + GIG + LL FG+ + I ++S + Sbjct: 526 VQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEAIEKASEQE 585 >gi|317011039|gb|ADU84786.1| excinuclease ABC subunit C [Helicobacter pylori SouthAfrica7] Length = 594 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 168/600 (28%), Positives = 280/600 (46%), Gaps = 52/600 (8%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQINNIRFTV 62 GVYQ D ++LY+GKA NL+KRIKSY ++ + RI M+ QI + + Sbjct: 16 GVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIHNNEITPNHRASLRIQMMVKQIAFLETIL 75 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-STIQGSY 121 E +AL+LE ++IK+LKP++NILLRDDK++PYI + P R Y Sbjct: 76 VENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKILKQPGVKY 135 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPF S + ++SL L + + + C+ +QI+RC PC +I+ E+Y+ Sbjct: 136 FGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEDKITKEEYL 191 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 + E + + + + +++ M++ + +E A+I+RDR++ + I Sbjct: 192 KIAKECLEMIENKDKLI-KELQLKMDRLSSNLRFEEALIYRDRISKIQKIAPFTCMDLAK 250 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 +D F+ Y N A + F G+ + + + +E + + + Y Sbjct: 251 LYDLDIFAFYGKNNKAVLVKMFMRGGKIISSAFEKIHSLNEFDADEAMKQAIINHYQSHL 310 Query: 299 C--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 PE ILLS E L+ ++ K+ + +PK+G+K +IE A+ NA Sbjct: 311 PLMPEQILLSACSNETLKELQEFINHKHSKKIALNIPKKGDKLALIEIAMKNAQE--IFS 368 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 + + IL++ F L +P R+EI+D SH VG MVV N F KN YR++ Sbjct: 369 QEKTSNEEEILEEVRSLFNLECVPYRVEIFDTSHHANSQCVGGMVVYENNAFQKNSYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 +L ++ M +L RR IK P++ ++DGG+ Q Sbjct: 429 HLK-----GLNEYTQMSELLTRRALDFIKE----------------PPPNLWVIDGGRVQ 467 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLNMRDPILYF 529 L+ A +LK + + +I+I+K + G + + L D L + Sbjct: 468 LNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTPSDTFKLLPSDKRLQW 525 Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 +Q+LRDE+HR+AI HR + K L + GIG + LL FG+ + I ++S + Sbjct: 526 VQKLRDESHRYAINFHRSTKIKNMKQIALLKEKGIGEASVKKLLDYFGSFEAIEKASEQE 585 >gi|82523814|emb|CAI78557.1| exconuclease ABC subunit C [uncultured Chloroflexi bacterium] Length = 500 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 168/506 (33%), Positives = 267/506 (52%), Gaps = 17/506 (3%) Query: 115 STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE 174 S Y+GP+ SV AV +T++ L+R F +C + R CL + IK C+ PC G Sbjct: 2 SDDGARYYGPYTSVWAVHQTLDVLRRIFPYLTCDREITGGDARACLYYDIKLCTAPCIGM 61 Query: 175 ISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234 I+ Y + + + +FL G + ++ +MNQA ++E A RD++ A+ + Sbjct: 62 INQAGYRQMIDDLGQFLEGRTEPIVTRLRADMNQAAEALNFERAAALRDQIQAIERVVEK 121 Query: 235 NDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLR 291 + + D ++ AC+Q F G+ G F ++ +ES +A +++ FL+ Sbjct: 122 QKVVSSDYIDSDVVAMARTDGEACVQVFFIRSGKLIGREYFLMEGAAESPDADVITGFLK 181 Query: 292 QFYTDKP-CPENILLSEEAEETSL-LEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH 349 QFY P P +LL E EE ++ E ++ G KV++ +P+ G ++++++ A NA Sbjct: 182 QFYDQAPNVPPEVLLPTEIEEMNIIREWLNSRRGGQKVELHIPRLGPQQELMQMAAENAS 241 Query: 350 RS----HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405 + Q + + L + LP P RIE YD S+ G +AVG MVV + Sbjct: 242 ATLSALQAQWQADTHRQEQALAELQTALDLPEAPNRIECYDISNTQGTAAVGSMVVFEQG 301 Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465 K+ YR+FN+ V DD A M VL RRFS+ ++ KK + +F PD Sbjct: 302 VPKKSLYRRFNIRS--VSGPDDFASMEEVLTRRFSRWQATQDASQAPGKKPDPAFSLLPD 359 Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525 ++++DGGKGQLS A+ VL++ + R + S+AK E F + E+L+L Sbjct: 360 LLLVDGGKGQLSRAEAVLERFELTGRFFLASLAK-----HNEELFIPGQSESLLLPRHSQ 414 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 LY +QR+RDEAHR+AIT+HR+RR KA S LD + GIGP+R++ LL FG ++ I ++ Sbjct: 415 ALYLVQRVRDEAHRYAITSHRQRRDKAGIASQLDTVPGIGPMRRKALLAHFGGLQQIRQA 474 Query: 585 SPETLASIEGISKKIACKIYNHFHKN 610 S E L +I GI+ K+A I + Sbjct: 475 STEELLTIPGITIKLAQAIRETLGQE 500 >gi|225550721|ref|ZP_03771670.1| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225379875|gb|EEH02237.1| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 584 Score = 350 bits (899), Expect = 3e-94, Method: Composition-based stats. Identities = 133/594 (22%), Positives = 260/594 (43%), Gaps = 38/594 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P PG Y D +++Y+GKA +L R SY + ++ + ++S I ++ + Sbjct: 8 KLKLIPHKPGCYLWKDEFDQIIYIGKAKDLYNRTHSYFNGP-KDNKTSKLVSNIKDLEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V EAL+LE N+IK +P++NILL+D ++PYI+IT+ + P L R +G Y Sbjct: 67 VVNNVNEALILENNLIKTHRPKYNILLKDGSNYPYIMITN-EQYPRLKYVRTYDKNKGIY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP A + N L F C + C+ + + RC ++ + Y Sbjct: 126 FGPLADSTNKYQLFNLLNSIFPFNKCNHQPHQK----CIYYDLHRC----INQVQPQTYE 177 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + + E K+ G ++ + A K D+E+A + ++ AL++I N + Sbjct: 178 KAIAEVKEIFKGNLDHILAILENKEQHAVAKLDFENAQKYAEQQKALTYIINSGLVQLDN 237 Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D Y N I + G+ + ++++ FL Q+Y+ Sbjct: 238 NESFDVVGFYEKNNYLVIIIFNYVKGKLLNKSADTFAI-YDHEINELITSFLMQYYSQNK 296 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 I++S ++ +LL +S + + T + + + A++ + ++ Sbjct: 297 ISTKIIVS--LDDDNLLALSQRFKTKFINAQTKFHKQILKLAFDNAILYFDSNIKSIINK 354 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + L + LP + IE +DNS+I + M+V RK+NL Sbjct: 355 QNELDEALNQLKQILKLPDLSM-IECFDNSNINLSLPIAGMIVYQNGKLNNKLNRKYNLM 413 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 K D M V+ RR+ +L+ + L P+++++DGGK Q++A Sbjct: 414 TT--KNASDYHFMIEVITRRYQRLVSQHQKL--------------PNLIVVDGGKLQVNA 457 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 L++L + I +I + K K + G+ ++L+ + + F+ ++++ H Sbjct: 458 TLYALEQLQIS--IPLIGLKKDQKHKTNA--IVLANGDEIILDRKSVLYKFLANMQNDVH 513 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +AI+ R + K+ + S L+++ G+G R LL + ++ + +S + L Sbjct: 514 NYAISFLRNKHTKSIFNSLLNDVQGLGKKRLNELLNYYDSINDLKSASDQELLQ 567 >gi|171920846|ref|ZP_02696210.2| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|188024477|ref|ZP_02997124.1| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518228|ref|ZP_03003763.1| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|171903048|gb|EDT49337.1| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|188018591|gb|EDU56631.1| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998241|gb|EDU67338.1| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 11 str. ATCC 33695] Length = 584 Score = 350 bits (899), Expect = 3e-94, Method: Composition-based stats. Identities = 136/612 (22%), Positives = 267/612 (43%), Gaps = 40/612 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P PG Y D +++Y+GKA +L R SY + ++ + ++S I ++ + Sbjct: 8 KLKLIPHKPGCYLWKDEFDQIIYIGKAKDLYNRTHSYFNGP-KDNKTSKLVSNIKDLEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V EAL+LE N+IK +P++NILL+D ++PYI+IT+ + P L R +G Y Sbjct: 67 VVSNVNEALILENNLIKTHRPKYNILLKDGSNYPYIMITN-EQYPRLKYVRTYDKNKGIY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP A + N L F C + C+ + + RC ++ + Y Sbjct: 126 FGPLADSTNKYQLFNLLNSIFPFNKCNHQPHQK----CIYYDLHRC----INQVQPQTYE 177 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + + E K+ G ++ + A K D+E+A + ++ AL++I N + Sbjct: 178 KAIAEVKEIFKGNLDHILAILENKEQHAVAKLDFENAQKYAEQQKALTYIINSGLVQLDN 237 Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D Y N I + G+ + ++++ FL Q+Y+ Sbjct: 238 NESFDVVGFYEKNNYLVIIIFNYVKGKLLNKSADTFAI-YDHEINELITSFLMQYYSQNK 296 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 I++S ++ +LL +S + + T + + + A++ + ++ Sbjct: 297 ISTKIIVS--LDDDNLLALSQRFKTKFINAQTKFHKQILKLAFDNAILYFDSNIKSVINK 354 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + L + LP + IE +DNS+I + M+V RK+NL Sbjct: 355 QNELDEALNQLKQILKLPDLSM-IECFDNSNINLSLPIAGMIVYQNGKLNNKLNRKYNLM 413 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 K D M V+ RR+ +L+ + L P+++++DGGK Q++A Sbjct: 414 TT--KNASDYHFMIEVITRRYQRLVSQHQKL--------------PNLIVVDGGKLQVNA 457 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A L++L + I +I + K K + G+ ++L+ + + F+ ++++ H Sbjct: 458 ALYALEQLQIS--IPLIGLKKDQKHKTNA--IVLANGDEIILDRKSVLYKFLANMQNDVH 513 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 +AI+ R + K+ + S L+++ G+G R LL + ++ + +S + L + K Sbjct: 514 NYAISFLRNKHTKSIFNSLLNDVQGLGKKRLNELLNYYDSINDLKSASDQELLQF--LPK 571 Query: 598 KIACKIYNHFHK 609 + + +K Sbjct: 572 NVLVNLREKLNK 583 >gi|188524411|ref|ZP_03004432.1| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198273782|ref|ZP_03206316.1| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|195659903|gb|EDX53283.1| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198249537|gb|EDY74319.1| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 4 str. ATCC 27816] Length = 584 Score = 350 bits (899), Expect = 3e-94, Method: Composition-based stats. Identities = 134/594 (22%), Positives = 261/594 (43%), Gaps = 38/594 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P PG Y D +++Y+GKA +L R SY + ++ + ++S I ++ + Sbjct: 8 KLKLIPHKPGCYLWKDEFDQIIYIGKAKDLYNRTHSYFNGP-KDNKTSKLVSNIKDLEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V EAL+LE N+IK +P++NILL+D ++PYI+IT+ + P L R +G Y Sbjct: 67 VVNNVNEALILENNLIKTHRPKYNILLKDGSNYPYIMITN-EQYPRLKYVRTYDKNKGIY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP A + N L F C + C+ + + RC ++ + Y Sbjct: 126 FGPLADSTNKYQLFNLLNSIFSFNKCNHQPHQK----CIYYDLHRC----INQVQPQTYE 177 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + + E K+ G ++ + A K D+E+A + ++ AL++I N + Sbjct: 178 KAIAEVKEIFKGNLDHILAILENKEQHAVAKLDFENAQKYAEQQKALTYIINSGLVQLDN 237 Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D Y N I + G+ + ++++ FL Q+Y+ Sbjct: 238 NESFDVVGFYEKNNYLVIIIFNYVKGKLLNKSADTFAI-YDHEINELITSFLMQYYSQNK 296 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 I++S ++ +LL +S + + T + + + A++ + ++ Sbjct: 297 ISTKIIVS--LDDDNLLSLSQRFKTKFINAQTKFHKQILKLAFDNAILYFDSNIKSVINK 354 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + L + LP + IE +DNS+I + M+V RK+NL Sbjct: 355 QNELDEALNQLKQILKLPDLSM-IECFDNSNINLSLPIAGMIVYQNGKLNNKLNRKYNLM 413 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 K D M V+ RR+ +L+ + L P+++++DGGK Q++A Sbjct: 414 TT--KNASDYHFMIEVITRRYQRLVSQHQKL--------------PNLIVVDGGKLQVNA 457 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A L++L + I +I + K K + G+ ++L+ + + F+ ++++ H Sbjct: 458 ALYALEQLQIS--IPLIGLKKDQKHKTNA--IVLANGDEIILDRKSVLYKFLANMQNDVH 513 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +AI+ R + K+ + S L+++ G+G R LL + ++ + +S + L Sbjct: 514 NYAISFLRNKHTKSIFNSLLNDVQGLGKKRLNELLNYYDSINDLKSASDQELLQ 567 >gi|209554512|ref|YP_002284817.1| excinuclease ABC subunit C [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|226698806|sp|B5ZBM7|UVRC_UREU1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|209542013|gb|ACI60242.1| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 584 Score = 350 bits (899), Expect = 3e-94, Method: Composition-based stats. Identities = 136/612 (22%), Positives = 267/612 (43%), Gaps = 40/612 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P PG Y D +++Y+GKA +L R SY + ++ + ++S I ++ + Sbjct: 8 KLKLIPHKPGCYLWKDEFDQIIYIGKAKDLYNRTHSYFNGP-KDNKTSKLVSNIKDLEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V EAL+LE N+IK +P++NILL+D ++PYI+IT+ + P L R +G Y Sbjct: 67 VVNNVNEALILENNLIKTHRPKYNILLKDGSNYPYIMITN-EQYPRLKYVRTYDKNKGIY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP A + N L F C + C+ + + RC ++ + Y Sbjct: 126 FGPLADSTNKYQLFNLLNSIFPFNKCNHQPHQK----CIYYDLHRC----INQVQPQTYE 177 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + + E K+ G ++ + A K D+E+A + ++ AL++I N + Sbjct: 178 KAIAEVKEIFKGNLDHILAILENKEQHAVAKLDFENAQKYAEQQKALTYIINSGLVQLDN 237 Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D Y N I + G+ + ++++ FL Q+Y+ Sbjct: 238 NESFDVVGFYEKNNYLVIIIFNYVKGKLLNKSADTFAI-YDHEINELITSFLMQYYSQNR 296 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 I++S ++ +LL +S + + T + + + A++ + ++ Sbjct: 297 ISTKIIVS--LDDDNLLALSQRFKTKFINAQTKFHKQILKLAFDNAILYFDSNIKSVINK 354 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + L + LP + IE +DNS+I + M+V RK+NL Sbjct: 355 QNELDEALNQLKQILKLPDLSM-IECFDNSNINLSLPIAGMIVYQNGKLNNKLNRKYNLM 413 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 K D M V+ RR+ +L+ + L P+++++DGGK Q++A Sbjct: 414 TT--KNASDYHFMIEVITRRYQRLVSQHQKL--------------PNLIVVDGGKLQVNA 457 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A L++L + I +I + K K + G+ ++L+ + + F+ ++++ H Sbjct: 458 ALYALEQLQIS--IPLIGLKKDQKHKTNA--IVLANGDEIILDRKSVLYKFLANMQNDVH 513 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 +AI+ R + K+ + S L+++ G+G R LL + ++ + +S + L + K Sbjct: 514 NYAISFLRNKHTKSIFNSLLNDVQGLGKKRLNELLNYYDSINDLKSASDQELLQF--LPK 571 Query: 598 KIACKIYNHFHK 609 + + +K Sbjct: 572 NVLVNLREKLNK 583 >gi|312877167|ref|ZP_07737137.1| excinuclease ABC, C subunit [Caldicellulosiruptor lactoaceticus 6A] gi|311796067|gb|EFR12426.1| excinuclease ABC, C subunit [Caldicellulosiruptor lactoaceticus 6A] Length = 527 Score = 350 bits (898), Expect = 4e-94, Method: Composition-based stats. Identities = 169/550 (30%), Positives = 266/550 (48%), Gaps = 35/550 (6%) Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T EVEAL+LE N+IK +P++N+LLRDDK++ YI IT+ P L R YF Sbjct: 2 TDNEVEALILECNLIKEYRPKYNVLLRDDKNYQYIKITN-EMFPRLVTTRKVEKDGSRYF 60 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSEKY 180 GP+ S +V++T+ L+ F LR+C + RPCL F I++C G C G++S E+Y Sbjct: 61 GPYVSGYSVKQTVELLKSLFMLRTCKKKFPDQLGKGRPCLNFHIEKCLGVCKGDVSEEEY 120 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + V A K LSG + E++ M + +E A +++L++L I IY Sbjct: 121 QKLVDRAVKVLSGKGDEIVEELKAKMFEYAENLMFEKAQEIKNKLSSLEQIITKQKVIYA 180 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD- 296 D + + I G+ F LK + + FL Q+Y+D Sbjct: 181 DDRSEDVINFAKDDAHIAIVVLIIRNGKLINKEEFVLKAEED-----TFERFLEQYYSDV 235 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P+ I++ E +E K YG+KVK+T+PKQGEK+++++ A NA S + Sbjct: 236 VSLPKEIIIPHRIENADNIEKMIEKLYGFKVKVTIPKQGEKKQLLDMAKKNAEISLANRQ 295 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + + L + L + ++IE YD S+I G VG +VV + F K YRKF Sbjct: 296 RVDDVYAEALLNLKNMLGLENEIEKIESYDISNIAGADNVGTLVVFEDGKFNKEFYRKFK 355 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + QDD ++ VL RR + L K PD++++DGG+ Q+ Sbjct: 356 IKG--FEGQDDIRSVKEVLTRRLTNLEK---------------HGRIPDLILIDGGQNQV 398 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 +AA VL L I + + K + + G+ + + + I +++E Sbjct: 399 NAALEVLNTLGFS--IPVAGMVKDDRHKTRD---LIYNGKEVGIQEYPLVYKLIYAIQEE 453 Query: 537 AHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 HRF + HR+ RKK S LDEI GIG RK L ++FG++ + ++S E + I Sbjct: 454 THRFVVKFHREVRKKHLYESILDEIEGIGEKRKLKLFRTFGSIDNLRKASIEEIVKAADI 513 Query: 596 SKKIACKIYN 605 ++A KI Sbjct: 514 PYEVALKIKE 523 >gi|57242395|ref|ZP_00370333.1| excinuclease ABC, C subunit [Campylobacter upsaliensis RM3195] gi|57016680|gb|EAL53463.1| excinuclease ABC, C subunit [Campylobacter upsaliensis RM3195] Length = 595 Score = 350 bits (897), Expect = 5e-94, Method: Composition-based stats. Identities = 194/621 (31%), Positives = 298/621 (47%), Gaps = 55/621 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH------SNNHTHRITHMISQINNI 58 +PE GVYQ + G++LYVGKA NL+KR+KSY ++ + RI MIS+ ++ Sbjct: 8 SLPESAGVYQYFNAEGKLLYVGKAKNLKKRVKSYFSFNPLRANSKNNLRIQKMISEAAHL 67 Query: 59 RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHR-DSSTI 117 +F T TE AL+LE ++IK+L P++NILLRDDK++PYI I K P R Sbjct: 68 KFISTKTEANALILENSLIKQLHPKYNILLRDDKTYPYIYIDLNEKFPRFELTRKIIKKP 127 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 + Y+GPF ++ +N+L + L+ + + C+ QI RCSG C IS Sbjct: 128 KIKYYGPF--FKGAKELLNALYLYYPLKQKKNC-----KKLCIFHQISRCSGVCENLISE 180 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E Y E + A K + + + + + + M + E+YE A RD + A+ ++ Sbjct: 181 ENYKEILANATKAILNPSILI-KNLEQVMLKYAHNENYEEAAKVRDEINAIKALETKVQI 239 Query: 238 ---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCT--FFLKTDSESTNAQILSYFLRQ 292 + F+L + G+ T + LK TN L Sbjct: 240 DLARLEDFEIFALASENGICSTLRFIIQEGKIISTHSKIHILKEKEIHTNEIYKQVLLES 299 Query: 293 FYTDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 F D P I + E+ E+ LLE +++ K+ I VP++GEKRKI + A NA + Sbjct: 300 FNQDSPLVSNQIYVYEDFEDRKLLEELLSERFAKKIHIQVPQKGEKRKICDLAFENALLN 359 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 L+ ++++ F L ++P IEIYDNSH+ G + VG MV + + K Sbjct: 360 INIHLNNND--LSLMEELKHYFELENVPHCIEIYDNSHLQGVAKVGAMVCFKDGKWEKKH 417 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YRKF+L + + D M+ VL R + +++ S PD+ ++DG Sbjct: 418 YRKFHL-----QGKSDYEQMKEVLIR----------------RTKDFESLSPPDLWLIDG 456 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAK---GPKRSAG--MEKFFVKKGEALVLNMRDPI 526 GK L A ++K + IS K +RS G +K KKGE +L D Sbjct: 457 GKALLDLASSIIKSTGANVDVLAISKEKIDFKAQRSKGNARDKIHSKKGE-FLLKTDDKK 515 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKKA--AYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 L F+Q+LRDEAHRFA++ H+ +KK S L + GI + LL +G + I + Sbjct: 516 LQFLQKLRDEAHRFALSFHKNTKKKQDLKSSKLLNL-GISEGYLQKLLAFYGDFESIYEA 574 Query: 585 SPETLASIEGISKKIACKIYN 605 + E L + + KIA KI + Sbjct: 575 NYEELKMLT--NAKIAQKIKD 593 >gi|185178930|ref|ZP_02964691.1| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|225551060|ref|ZP_03772006.1| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|184209193|gb|EDU06236.1| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|225378875|gb|EEH01240.1| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 584 Score = 350 bits (897), Expect = 5e-94, Method: Composition-based stats. Identities = 134/612 (21%), Positives = 266/612 (43%), Gaps = 40/612 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P PG Y D +++Y+GKA +L R SY + ++ + ++S I ++ + Sbjct: 8 KLKLIPHKPGCYLWKDEFDQIIYIGKAKDLYNRTHSYFNGP-KDNKTSKLVSNIKDLEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V EAL+LE N+IK +P++NILL+D ++PYI+IT+ + P L R +G Y Sbjct: 67 VVNNVNEALILENNLIKTHRPKYNILLKDGSNYPYIMITN-EQYPRLKYVRTYDKNKGIY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP A + N L F C + C+ + + +C ++ + Y Sbjct: 126 FGPLADSTNKYQLFNLLNSIFPFNKCNHQPHQK----CIYYDLHQC----INQVQPQTYE 177 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + + E K+ G ++ + A K D+E+A + ++ AL++I N + Sbjct: 178 KAIAEVKEIFKGNLDHILAILENKEQHAVAKLDFENAQKYAEQQKALTYIINSGLVQLDN 237 Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D Y N I + G+ + ++++ FL Q+Y+ Sbjct: 238 NESFDVVGFYEKNNYLVIIIFNYVKGKLLNKSADTFAI-YDHEINELITSFLMQYYSQNK 296 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 I++S ++ +LL +S + + T + + + A++ + ++ Sbjct: 297 ISTKIIVS--LDDDNLLALSQRFKTKFINAQTKFHKQILKLAFDNAILYFDSNIKSVINK 354 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + L + L + IE +DNS+I + M+V RK+NL Sbjct: 355 QNELDEALNQLKQILKLSDLSM-IECFDNSNINLSLPIAGMIVYQNGKLNNKLNRKYNLM 413 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 K D M V+ RR+ +L+ + L P+++++DGGK Q++A Sbjct: 414 TT--KNASDYHFMIEVITRRYQRLVSQHQKL--------------PNLIVVDGGKLQVNA 457 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A L++L + I +I + K K + G+ ++L+ + + F+ ++++ H Sbjct: 458 ALYALEQLQIS--IPLIGLKKDQKHKTNA--IVLANGDEIILDRKSVLYKFLANMQNDVH 513 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 +AI+ R + K+ + S L+++ G+G R LL + ++ + +S + L + K Sbjct: 514 NYAISFLRNKHTKSIFNSLLNDVQGLGKKRLNELLNYYDSINDLKSASDQELLQF--LPK 571 Query: 598 KIACKIYNHFHK 609 + + +K Sbjct: 572 NVLVNLREKLNK 583 >gi|256384249|gb|ACU78819.1| excinuclease ABC subunit C [Mycoplasma mycoides subsp. capri str. GM12] gi|256385082|gb|ACU79651.1| excinuclease ABC subunit C [Mycoplasma mycoides subsp. capri str. GM12] gi|296455738|gb|ADH21973.1| excinuclease ABC subunit C [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 584 Score = 350 bits (897), Expect = 5e-94, Method: Composition-based stats. Identities = 142/611 (23%), Positives = 267/611 (43%), Gaps = 35/611 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P PG Y + V+YVGKA NL+KR+ +Y + + + T ++ +I ++++ Sbjct: 6 QVDLLPNKPGCYLFFNKDNDVIYVGKAKNLKKRVSTYFNKA-YNIKTTRLVREITDLKYF 64 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 + E E+LLLE N+IK+ P++N+LL DDK++PYI+IT++ P R Sbjct: 65 IVDNEKESLLLEKNLIKKYHPKYNVLLNDDKTYPYIIITNQKD-PMYKYVRKYDKKALKN 123 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GP + +LQR F LR C ++ +PCL + + +CSG C ++ Y Sbjct: 124 YGPLPIGSNARSILLTLQRLFPLRMCQGNL----NKPCLYYHLNQCSGACFKQVDLSYYE 179 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + + KF G + +K+ + + M +A+ +E A +D++ +L I + Sbjct: 180 YQIKQVDKFFKGEINQVKQTLIKQMQKASDNLQFEQAQRIKDQITSLDFITAKQNVDIVT 239 Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 +D + N++ C F+ GQ +++ +++ + +L+Q Y Sbjct: 240 NKNIDVINYEINQDKICFVMLFYRLGQLTYKD-EYIQNYEGQNLSELFNSYLQQIYQKNI 298 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P+ +L+ E E L + K ++ +L + SH Sbjct: 299 YPDVLLIPNEIELLDLDQNLLEFSSYSLNKQDDVFIKLAKQNAIDSLNKSVISHNVNSGD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E IL+ + KRIEI+D S+I G +V ++N++RK+N+ Sbjct: 359 E---IEILEQLKQISNASKYLKRIEIFDISNIYNQFITGACIVYINAKPIRNEFRKYNID 415 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + M +R ++ + E+ PD++I+DGG Q+ A Sbjct: 416 SSYTSDYARMKFMLE--KRFLKRIKEKEQ---------------LPDLIIVDGGIIQIHA 458 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ VL KLN+ +I +I ++K + + + + + F+ L+ Sbjct: 459 AKEVLNKLNL--KIDVIGLSKDDHHKTRYLIDIFE--QTIDIKNFKKLYNFLTSLQIRVD 514 Query: 539 RFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 +A + RK+ + I G+G L + F T+ I +S + L + +KK Sbjct: 515 EYAKSGFRKKYHNQLNDQILLIKGVGKKTNLKLYKHFKTIDNIKNASFDELNKVIN-NKK 573 Query: 599 IACKIYNHFHK 609 I I ++ +K Sbjct: 574 ITNLIISNLNK 584 >gi|195867851|ref|ZP_03079850.1| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|195660428|gb|EDX53686.1| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 9 str. ATCC 33175] Length = 584 Score = 350 bits (897), Expect = 5e-94, Method: Composition-based stats. Identities = 134/612 (21%), Positives = 266/612 (43%), Gaps = 40/612 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P PG Y D +++Y+GKA +L R SY + ++ + ++S I ++ + Sbjct: 8 KLKLIPHKPGCYLWKDEFDQIIYIGKAKDLYNRTHSYFNGP-KDNKTSKLVSNIKDLEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V EAL+LE N+IK +P++NILL+D ++PYI+IT+ + P L R +G Y Sbjct: 67 VVNNVNEALILENNLIKTHRPKYNILLKDGSNYPYIMITN-EQYPRLKYVRTYDKNKGIY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP A + N L F C + C+ + + +C ++ + Y Sbjct: 126 FGPLADSTNKYQLFNLLNSIFPFNKCNHQPHQK----CIYYDLHQC----INQVQPQTYE 177 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + + E K+ G ++ + A K D+E+A + ++ AL++I N + Sbjct: 178 KAIAEVKEIFKGNLDHILAILENKEQHAVAKLDFENAQKYAEQQKALTYIINSGLVQLDN 237 Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D Y N I + G+ + ++++ FL Q+Y+ Sbjct: 238 NESFDVVGFYEKNNYLVIIIFNYVKGKLLNKSADTFAI-YDHEINELITSFLMQYYSQNK 296 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 I++S ++ +LL +S + + T + + + A++ + ++ Sbjct: 297 ISTKIIVS--LDDDNLLALSQRFKTKFINAQTKFHKQILKLAFDNAILYFDSNIKSAINK 354 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + L + L + IE +DNS+I + M+V RK+NL Sbjct: 355 QNELDEALNQLKQILKLSDLSM-IECFDNSNINLSLPIAGMIVYQNGKLNNKLNRKYNLM 413 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 K D M V+ RR+ +L+ + L P+++++DGGK Q++A Sbjct: 414 TT--KNASDYHFMIEVITRRYQRLVSQHQKL--------------PNLIVVDGGKLQVNA 457 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A L++L + I +I + K K + G+ ++L+ + + F+ ++++ H Sbjct: 458 ALYALEQLQIS--IPLIGLKKDQKHKTNA--IVLANGDEIILDRKSVLYKFLANMQNDVH 513 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 +AI+ R + K+ + S L+++ G+G R LL + ++ + +S + L + K Sbjct: 514 NYAISFLRNKHTKSIFNSLLNDVQGLGKKRLNELLNYYDSINDLKSASDQELLQF--LPK 571 Query: 598 KIACKIYNHFHK 609 + + +K Sbjct: 572 NVLVNLREKLNK 583 >gi|15611827|ref|NP_223478.1| excinuclease ABC subunit C [Helicobacter pylori J99] gi|8134805|sp|Q9ZL21|UVRC_HELPJ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|4155322|gb|AAD06337.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter pylori J99] Length = 594 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 167/600 (27%), Positives = 275/600 (45%), Gaps = 52/600 (8%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQINNIRFTV 62 GVYQ D ++LY+GKA NL+KRIKSY + + R+ M+ QI + + Sbjct: 16 GVYQYFDKNRQLLYIGKAKNLKKRIKSYFSVRNNEITPNPRTSLRVQMMVKQIAFLETIL 75 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-STIQGSY 121 E +AL+LE ++IK+LKP++NILLRDDK++PYI + P R Y Sbjct: 76 VENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSIDFPIPLITRKILKQPGVKY 135 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPF S + ++SL L + + + C+ +QI+RC PC +I+ E+Y+ Sbjct: 136 FGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEDKITKEEYL 191 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 + E + + + + +++ M + + +E A+I+RDR+A + I Sbjct: 192 KIAKECLEMIENKDRLI-KELELKMERLSSNLRFEEALIYRDRIAKIQKIAPFTCMDLAK 250 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 +D F+ Y N A + F G+ + + + + + + + Y Sbjct: 251 LYDLDIFAFYGGNNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAIINHYQSHL 310 Query: 299 C--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 PE ILLS E L+ QY K+ +++PK+G+K +IE A+ NA Sbjct: 311 PLMPEQILLSACSNETLKELQEFISHQYSKKIALSIPKKGDKLALIEIAMKNAQE--IFS 368 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 + IL++ F L +P R+EI+D SH VG MVV N F K+ YR++ Sbjct: 369 QEKTSNEDRILEEARSLFNLECVPYRVEIFDTSHHSNSQCVGGMVVYENNAFQKDSYRRY 428 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 +L ++ M +L RR K P++ ++DGG+ Q Sbjct: 429 HLK-----GSNEYDQMSELLTRRALDFAKE----------------PPPNLWVIDGGRAQ 467 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLNMRDPILYF 529 L+ A +LK + + +I+I+K + G + L D L + Sbjct: 468 LNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTISHTFKLLPSDKRLQW 525 Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 +Q+LRDE+HR+AI HR + K L + GIG + LL FG+ + I ++S + Sbjct: 526 VQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEAIEKASDQE 585 >gi|197294510|ref|YP_001799051.1| excinuclease ABC subunit C [Candidatus Phytoplasma australiense] gi|171853837|emb|CAM11786.1| Nuclease subunit of the excinuclease complex [Candidatus Phytoplasma australiense] Length = 597 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 163/624 (26%), Positives = 278/624 (44%), Gaps = 51/624 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P PG Y + ++YVGKA L+KR++SY H + T M+ +I+++ + Sbjct: 7 KIKNLPLNPGCYLFKNKNNTIIYVGKAKKLRKRVQSYFIK-GHNRKTTCMVQEISDVFYV 65 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS- 120 +T E EAL+LEAN+IK P++N L DDK++PY+ IT + K P L R G Sbjct: 66 ITNNEQEALILEANLIKEHTPKYNFKLLDDKTYPYLEIT-QEKDPQLKISRFKKIPPGKV 124 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 FGP+ ++++ ++T+ L + L +PCL F I +C GPC + + Y Sbjct: 125 LFGPYPNLNSTKETLKLLHFLYPL----RRCPLSAKKPCLHFHINQCLGPC--ALKNVDY 178 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + FL G + +KI M +A+ + YE A +RD L + + + Sbjct: 179 RPNIEAITNFLKGDTKIILKKIKLLMQEASQQRFYEKAQEYRDMLIHIQNTTKKQIISHQ 238 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D + +N + IQ G + + ++ +L +Y K Sbjct: 239 KIKNCDILAYVYNDDQIAIQILKMQQGNIVDSHRSVFSYVGY--PQENINNYLALYYQSK 296 Query: 298 PCPENILL-----------SEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 PE I+ S ++ ++L + K K+ V K G+K+K+ AL Sbjct: 297 LKPELIITGKNTHNLTSPESNTQQQEAILFSAELLSQTLKTKVVVAKIGDKKKLYSLALK 356 Query: 347 NAHRSHTQKLSTEISHQMILKDF--TKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGE 404 NA Q S +++ KRI+++DNS + G + V +V + Sbjct: 357 NAQNDLMQNNLLYQSKDQAIQEALDQLAIIFNKDIKRIDVFDNSQLFGQAFVSARIVFDQ 416 Query: 405 NGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWP 464 F K YR F++ ND ++ VL R + + K E P Sbjct: 417 FDFKKPLYRVFHIKDND---PNEFTSFEEVLTRSYQKKDKEE--------------LVKP 459 Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524 +++++DGG QL A L +LN++ I + ++ K K +E + + L + Sbjct: 460 NLILVDGGLWQLKAGFQALNQLNLD--IALGALQKNDKHQ--LECLLTSHNK-IALTPKP 514 Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISR 583 + F++RL +E HRF + H K + K + L +I GIG R +++L F + + + + Sbjct: 515 RLFAFLKRLSEEVHRFVVKFHHKTKNKLDYQTVLSQIKGIGAKRHKIILNHFNSWEDLKK 574 Query: 584 SSPETLASIEGISKKIACKIYNHF 607 +S ET I GISK+I I + Sbjct: 575 ASWETFEKI-GISKEIFEAIKSKL 597 >gi|307326032|ref|ZP_07605230.1| excinuclease ABC, C subunit [Streptomyces violaceusniger Tu 4113] gi|306888254|gb|EFN19242.1| excinuclease ABC, C subunit [Streptomyces violaceusniger Tu 4113] Length = 736 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 131/472 (27%), Positives = 227/472 (48%), Gaps = 16/472 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 Q+PE PGVY+ D GRV+YVGKA +L+ R+ SY N R M++ + + Sbjct: 10 KPGQIPESPGVYKFRDEHGRVIYVGKAKSLRPRLSSYFQDLANLHPRTRTMVTTAAAVEW 69 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TEVEAL LE + IK PRFN+ RDDKS+P++ +T + P + R + Sbjct: 70 TVVSTEVEALQLEYSWIKEFDPRFNVKYRDDKSYPFLAVTLNEEFPRVQVMRGAKKKGVR 129 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP+ A+ +T++ + R F +R+C+ VF+ RPCLL I +CS PC G +++ Sbjct: 130 YFGPYGHAWAIRETVDLMLRVFPVRTCSAGVFKRSAQIGRPCLLGYIGKCSAPCVGRVTA 189 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E++ E E F++G ++ + M++A +YE A RD + AL N Sbjct: 190 EEHRELAEEFCDFMAGRTGTYLRRLEQQMHEAAEDMEYEKAARLRDDIGALKRAMEKNAV 249 Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 + D ++ ++ A +Q G+ RG + A ++ + L+Q Y Sbjct: 250 VLADATDADLIAVAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEAVDTAGLVEHALQQLY 309 Query: 295 TDK---PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 ++ P+ +L+ + + ++ G V + +P++G+K+ +++ NA ++ Sbjct: 310 GEERGDAVPKEVLVPAVPDPAEPVTQWLTERRGSLVDLRIPQRGDKKDLMQTVQRNAQQA 369 Query: 352 HTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407 + S L++ + L P R+E +D SH+ G V MVV + Sbjct: 370 LALHKTKRASDLTTRSRALEEIAEALGLDSAPLRVECFDISHLQGDDVVASMVVFEDGLP 429 Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS 459 K++YR+F + QDD M V+ RRF + + ++ ++ + Sbjct: 430 RKSEYRRFQIKS--FAGQDDVRSMHEVVSRRFRRYLMEKQKTGEWEEQATGA 479 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 53/160 (33%), Positives = 90/160 (56%), Gaps = 7/160 (4%) Query: 445 NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRS 504 + + + + F P +V++DGGK Q++AAQ L +L V++ + + +AK + Sbjct: 544 DGPSGPIDEEGRPKRFAYPPQLVVVDGGKPQVAAAQRALDELGVDD-VAVCGLAKRLE-- 600 Query: 505 AGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGI 563 E + + + +VL LY +QR+RDEAHRFAIT R +R K+ PLD + G+ Sbjct: 601 ---EVWLPDEEDPVVLPRSSEGLYLLQRVRDEAHRFAITYQRSKRAKSMKAGPLDSVPGL 657 Query: 564 GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 G RK+ LL+ FG+VK + ++ E + + G+ +K A + Sbjct: 658 GDSRKQALLKHFGSVKRLRAATVEQICEVPGVGRKTAETV 697 >gi|171920374|ref|ZP_02690327.2| excinuclease ABC, C subunit [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171902806|gb|EDT49095.1| excinuclease ABC, C subunit [Ureaplasma parvum serovar 1 str. ATCC 27813] Length = 584 Score = 347 bits (890), Expect = 4e-93, Method: Composition-based stats. Identities = 138/612 (22%), Positives = 264/612 (43%), Gaps = 40/612 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P PG Y D +++Y+GKA +L R SY + ++ + +++ IN++ + Sbjct: 8 KLKLIPHKPGCYLWKDQFNQIIYIGKAKDLYNRTHSYFNG-CKDNKTSKLVNNINDLEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V EAL+LE N+IK P++NILL+D ++PYI+IT+ + P L R +G Y Sbjct: 67 VVNNVNEALILENNLIKTHLPKYNILLKDGSNYPYIMITN-EQYPRLKYVRTYDKNKGIY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP A + N L F C ++ C+ + + +C ++ Y Sbjct: 126 FGPLADSTNKYQLFNLLNSIFPFNKCNHQPYKK----CIYYDLHQC----INQVQQSTYQ 177 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 E + E K+ G ++ + A K D+E+A + ++ AL+ I N + Sbjct: 178 EAISEVKEIFKGNLDHILMILQTKEQHAVTKLDFENAQKYAEQQKALTSIINSGLVQLDN 237 Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D Y N I + G+ + ++++ FL Q+Y+ Sbjct: 238 NESFDIIGFYEKNNYLVIIIFNYVKGKLLNKSADTFAI-YDYEINELITSFLMQYYSQNK 296 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 I++S ++ +LL +S + T + + ++ A++ + ++ Sbjct: 297 ISSKIIVS--LDDDNLLALSQRFHTKFINAQTKFHKQILKLALDNAILYFESNIKNVINK 354 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + L + LP IE +DNS+I + M+V RK+NL Sbjct: 355 QNELDDALNQLKQILKLP-DLNIIECFDNSNINLSLPIAGMIVYQNGKLNNKLNRKYNLM 413 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 K D M V+ RR+ +L+ + L P+++++DGGK Q++A Sbjct: 414 TT--KNASDYHFMIEVITRRYQRLVSQHQKL--------------PNLIVVDGGKLQVNA 457 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A L +L + I +I + K K + G+ +VL+ + + F+ ++++ H Sbjct: 458 ALYALAQLQI--NIPLIGLKKDQKHKTNA--IVLTNGDEIVLDRKSILYKFLANMQNDVH 513 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 +AI+ R + K+ + S LD + G+G R LL+ + ++ + +S + L + K Sbjct: 514 NYAISFLRDKHTKSIFNSLLDNVQGLGKKRFNELLKYYDSINDLKSASDQELLQF--LPK 571 Query: 598 KIACKIYNHFHK 609 + + +K Sbjct: 572 NVLVNLREKLNK 583 >gi|183508512|ref|ZP_02689173.2| excinuclease ABC, C subunit [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|182675945|gb|EDT87850.1| excinuclease ABC, C subunit [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 584 Score = 347 bits (890), Expect = 4e-93, Method: Composition-based stats. Identities = 141/616 (22%), Positives = 264/616 (42%), Gaps = 48/616 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P PG Y D +++Y+GKA +L R SY + ++ + +++ IN++ + Sbjct: 8 KLKLIPHKPGCYLWKDQFNQIIYIGKAKDLYNRTHSYFNG-CKDNKTSKLVNNINDLEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V EAL+LE N+IK P++NILL+D ++PYI+IT+ + P L R +G Y Sbjct: 67 VVNNVNEALILENNLIKTHLPKYNILLKDGSNYPYIMITN-EQYPRLKYVRTYDKNKGIY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP A + N L F C ++ C+ + + +C ++ Y Sbjct: 126 FGPLADSTNKYQLFNLLNSIFPFNKCNHQPYKK----CIYYDLHQC----INQVQQSTYQ 177 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 E + E K+ G ++ + A K D+E+A + ++ AL+ I N + Sbjct: 178 EAISEVKEIFKGNLDHILMILQTKEQHAVTKLDFENAQKYAEQQKALTSIINSGLVQLDN 237 Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D Y N I + G+ + ++++ FL Q+Y+ Sbjct: 238 NESFDIIGFYEKNNYLVIIIFNYVKGKLLNKSADTFAI-YDYEINELITSFLMQYYSQNK 296 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQ 354 I++S + + L F K + ++I++ AL NA + Sbjct: 297 ISSKIIVSLDDDNLLALSQRF------HTKFINAQTKFHKQILKLALDNAILYFESNIKN 350 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 ++ + L + LP IE +DNS+I + M+V RK Sbjct: 351 VINKQNELDDALNQLKQILKLP-DLNIIECFDNSNINLSLPIAGMIVYQNGKLNNKLNRK 409 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 +NL K D M V+ RR+ +L+ + L P+++++DGGK Sbjct: 410 YNLMTT--KNASDYHFMIEVITRRYQRLVSQHQKL--------------PNLIVVDGGKL 453 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++AA L +L + I +I + K K + + G+ +VL+ + + F+ ++ Sbjct: 454 QVNAALYALAQLQI--NIPLIGLKKDQKHKT--DAIVLTNGDEIVLDRKSILYKFLANMQ 509 Query: 535 DEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 ++ H +AI+ R + K+ + S LD + G+G R LL+ + ++ + +S + L Sbjct: 510 NDVHNYAISFLRDKHTKSIFNSLLDNVQGLGKKRFNELLKYYDSINDLKSASDQELLQF- 568 Query: 594 GISKKIACKIYNHFHK 609 + K + + +K Sbjct: 569 -LPKNVLVNLREKLNK 583 >gi|186701612|ref|ZP_02553940.2| excinuclease ABC, C subunit [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|186700842|gb|EDU19124.1| excinuclease ABC, C subunit [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 584 Score = 347 bits (889), Expect = 5e-93, Method: Composition-based stats. Identities = 136/594 (22%), Positives = 258/594 (43%), Gaps = 38/594 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P PG Y D +++Y+GKA +L R SY + ++ + +++ IN++ + Sbjct: 8 KLKLIPHKPGCYLWKDQFNQIIYIGKAKDLYNRTHSYFNG-CKDNKTSKLVNNINDLEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V EAL+LE N+IK P++NILL+D ++PYI+IT+ + P L R +G Y Sbjct: 67 VVNNVNEALILENNLIKTHLPKYNILLKDGSNYPYIMITN-EQYPRLKYVRTYDKNKGIY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP A + N L F C ++ C+ + + +C ++ Y Sbjct: 126 FGPLADSTNKYQLFNLLNSIFPFNKCNHQPYKK----CIYYDLHQC----INQVQQSTYQ 177 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 E + E K+ G ++ + A K D+E+A + ++ AL+ I N + Sbjct: 178 EAISEVKEIFKGNLDHILMILQTKEQHAVTKLDFENAQKYAEQQKALTSIINSGLVQLDN 237 Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D Y N I + G+ + ++++ FL Q+Y+ Sbjct: 238 NESFDIIGFYEKNNYLVIIIFNYVKGKLLNKSADTFAI-YDYEINELITSFLMQYYSQNK 296 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 I++S ++ +LL +S + T + + ++ A++ + ++ Sbjct: 297 ISSKIIVS--LDDDNLLALSQRFHTKFINAQTKFHKRILKLALDNAILYFESNIKNVINK 354 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + L + LP IE +DNS+I + M+V RK+NL Sbjct: 355 QNELDDALNQLKQILKLP-DLNIIECFDNSNINLSLPIAGMIVYQNGKLNNKLNRKYNLM 413 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 K D M V+ RR+ +L+ + L P+++++DGGK Q++A Sbjct: 414 TT--KNASDYHFMIEVITRRYQRLVSQHQKL--------------PNLIVVDGGKLQVNA 457 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A L +L + I +I + K K + G+ +VL+ + + F+ ++++ H Sbjct: 458 ALYALAQLQI--NIPLIGLKKDQKHKTNA--IVLTNGDEIVLDRKSILYKFLANMQNDVH 513 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +AI+ R + K+ + S LD + G+G R LL+ + ++ + +S + L Sbjct: 514 NYAISFLRDKHTKSIFNSLLDNVQGLGKKRFNELLKYYDSINDLKSASDQELLQ 567 >gi|13357942|ref|NP_078216.1| excinuclease ABC subunit C [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762218|ref|YP_001752464.1| excinuclease ABC subunit C [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|26006902|sp|Q9PQA9|UVRC_UREPA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|189038127|sp|B1AJ20|UVRC_UREP2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|11356846|pir||H82898 excinuclease ABC subunit c UU381 [imported] - Ureaplasma urealyticum gi|6899365|gb|AAF30791.1|AE002135_7 excinuclease ABC subunit c [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827795|gb|ACA33057.1| excinuclease ABC, C subunit [Ureaplasma parvum serovar 3 str. ATCC 27815] Length = 584 Score = 347 bits (889), Expect = 5e-93, Method: Composition-based stats. Identities = 138/612 (22%), Positives = 265/612 (43%), Gaps = 40/612 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P PG Y D +++Y+GKA +L R SY + ++ + +++ IN++ + Sbjct: 8 KLKLIPHKPGCYLWKDQFNQIIYIGKAKDLYNRTHSYFNG-CKDNKTSKLVNNINDLEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V EAL+LE N+IK P++NILL+D ++PYI+IT+ + P L R +G Y Sbjct: 67 VVNNVNEALILENNLIKTHLPKYNILLKDGSNYPYIMITN-EQYPRLKYVRTYDKNKGIY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP A + N L F C ++ C+ + + +C ++ Y Sbjct: 126 FGPLADSTNKYQLFNLLNSIFPFNKCNHQPYKK----CIYYDLHQC----INQVQQSTYQ 177 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 E + E K+ G ++ + A K D+E+A + ++ AL+ I N + Sbjct: 178 EAISEVKEIFKGNLDHILMILQTKEQHAVTKLDFENAQKYAEQQKALTSIINSGLVQLDN 237 Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D Y N I + G+ + ++++ FL Q+Y+ Sbjct: 238 NESFDIIGFYEKNNYLVIIIFNYVKGKLLNKSADTFAI-YDYEINELITSFLMQYYSQNK 296 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 I++S ++ +LL +S + T + + ++ A++ + ++ Sbjct: 297 ISSKIIVS--LDDDNLLALSQRFHTKFINAQTKFHKRILKLALDNAILYFESNIKNVINK 354 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + L + LP IE +DNS+I + M+V RK+NL Sbjct: 355 QNELDDALNQLKQILKLP-DLNIIECFDNSNINLSLPIAGMIVYQNGKLNNKLNRKYNLM 413 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 K D M V+ RR+ +L+ + L P+++++DGGK Q++A Sbjct: 414 TT--KNASDYHFMIEVITRRYQRLVSQHQKL--------------PNLIVVDGGKLQVNA 457 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A L +L + I +I + K K + + G+ +VL+ + + F+ ++++ H Sbjct: 458 ALYALAQLQI--NIPLIGLKKDQKHKT--DAIVLTNGDEIVLDRKSILYKFLANMQNDVH 513 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 +AI+ R + K+ + S LD + G+G R LL+ + ++ + +S + L + K Sbjct: 514 NYAISFLRDKHTKSIFNSLLDNVQGLGKKRFNELLKYYDSINDLKSASDQELLQF--LPK 571 Query: 598 KIACKIYNHFHK 609 + + +K Sbjct: 572 NVLVNLREKLNK 583 >gi|150400337|ref|YP_001324104.1| excinuclease ABC subunit C [Methanococcus vannielii SB] gi|150013040|gb|ABR55492.1| excinuclease ABC, C subunit [Methanococcus vannielii SB] Length = 527 Score = 346 bits (887), Expect = 7e-93, Method: Composition-based stats. Identities = 170/565 (30%), Positives = 273/565 (48%), Gaps = 53/565 (9%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 ++ +P+ PG Y DI ++YVGKA NL+KRI SY NH + +++ I +I F Sbjct: 2 INLSVIPKEPGCYIYRDIEKNIIYVGKAKNLKKRISSYFSKKNHDTKTQNLVKSIFDIEF 61 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT E+EALLLE+ +IK+ P++NI L+D K++ YI I+ + P + R+ + +G Sbjct: 62 IVTNNEIEALLLESILIKKHSPKYNIDLKDSKNYAYIYIS-EENFPRIGISRN-KSEKGK 119 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 ++GPF S + ++ L++TF +RSC + RPCL IK C+ PCTG I+S+KY Sbjct: 120 FYGPFISAKERDYVLDILKKTFKIRSCKNMQ----KRPCLRHHIKNCTAPCTGNIASKKY 175 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI-- 238 ++ + +A+ L G +L K+ M + +E AI+ R+ ++A+ +++ + Sbjct: 176 LDQIKKAEYILKGNIESLISKLKDEMIIKSKNLQFEEAILIREEISAIENLKTKQNINRQ 235 Query: 239 -YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D + I G F + FL Q+Y++ Sbjct: 236 KNYDEDIIAYIEKDGNIHIIVFNVLKGTLYDKKYFKFEYVEN-----FFEEFLIQYYSEN 290 Query: 298 PCPENILLSEEAEETSLLEISF---------FKQYGYKVKITVPKQGEKRKIIEQALINA 348 P I++S ++ + K+ KV VPK+GEK++++ A+ N Sbjct: 291 RPPSEIIISGFPKDFEDFSKEYNPNALLEFLSKKRESKVSFKVPKKGEKKELLNLAMKNL 350 Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 ++ K L + PK IE +D SH+ G V MV + Sbjct: 351 EILVLGNDLK-------VEALKNKLMLENPPKVIECFDISHLSGNFTVASMVQFRDGKAD 403 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 K YR++ + V DD + V+ RR+S+L+K PD++I Sbjct: 404 KKNYRRYKIKT--VTGIDDFKSISEVVFRRYSKLLKEN--------------SKMPDLII 447 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 +DGGKGQLS+A LKKLN+ +I ++SIAK + E + AL + + Sbjct: 448 IDGGKGQLSSAFYELKKLNL--KIPVVSIAKREE-----EIYAPGTENALPITKNEKASL 500 Query: 529 FIQRLRDEAHRFAITTHRKRRKKAA 553 FIQ +RDEAHRFAIT ++ RKK Sbjct: 501 FIQEIRDEAHRFAITYNKLLRKKDL 525 >gi|300521566|gb|ADK25994.1| UvrC [Candidatus Nitrososphaera gargensis] Length = 542 Score = 346 bits (887), Expect = 7e-93, Method: Composition-based stats. Identities = 156/566 (27%), Positives = 262/566 (46%), Gaps = 50/566 (8%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT--HRITHMISQINNI 58 + ++MP+ PGVY M D G+++Y+GKA NL+KR+ SY ++ + + ++++I +I Sbjct: 8 LKEKRMPDEPGVYLMKDSDGKIIYIGKAKNLRKRVTSYFTKHDPDVGWKTSRLVNKIADI 67 Query: 59 RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-- 116 F VT E+EA LLE+N+IKR +P FNI L+D + + Y+ IT P L R + Sbjct: 68 EFIVTDNEIEAFLLESNLIKRYRPVFNIELKDQQRYTYLKIT-DEPFPRLLVARRNRNGE 126 Query: 117 ---IQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 +G +GPF + T+ L++ F +R C R PCL + IK C PC Sbjct: 127 FLGPKGKVYGPFVRGSSKFLTVGLLRKLFKIRICN----RLPKTPCLQYFIKNCEAPCIA 182 Query: 174 EISSEKYMEFVHEAKKFLSGGN--HNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHI 231 ++ YM V + L G + + M +A+ DYE A RD L L+++ Sbjct: 183 NVTRGHYMMNVMALQDILEGKSSIDKFANNMEDEMKRASDLGDYERAKEIRDTLYRLNNL 242 Query: 232 QNHNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSY 288 + D + ++ + RG + K + + LS Sbjct: 243 RVKQKMEKAVNRNPDEEYISIMRDNKKGIAHVMALRRTRGVISDRKKFEFDLVGDNSLSS 302 Query: 289 FLRQFYTDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQ---GEKRKIIEQA 344 FL Q+Y+ P P + ++E+ ++ +LE S K G++V I + EKR++++ Sbjct: 303 FLVQYYSSVPVIPRFLYVNEDLDDRQVLERSLEKIAGHRVSIFNIRHVLAKEKRQLMDLI 362 Query: 345 LINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGE 404 N + E + + + L +P+ I+ +D S++ AVG V Sbjct: 363 SRN------LSMYIERGYDPAVVELKNAIRLLSMPEVIDCFDVSNLGTSIAVGSCVRFAN 416 Query: 405 NGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWP 464 N K+ Y+KF + V Q+D AM+ ++ RR+ +E+ P Sbjct: 417 NKPAKSSYKKFRIRT--VAGQNDFAMIGELVRRRYHSAGDDEK---------------LP 459 Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524 D++++DGG GQL AA L+ L + + + I +AK + E + E +VL + Sbjct: 460 DLIVIDGGHGQLGAAVASLRSLGIHD-VPCIGLAKENE-----EIYMPGLQEPIVLPKSN 513 Query: 525 PILYFIQRLRDEAHRFAITTHRKRRK 550 L +Q RDEAHRF + + RK Sbjct: 514 AGLKMLQHARDEAHRFGLAYNVNLRK 539 >gi|224437841|ref|ZP_03658788.1| excinuclease ABC subunit C [Helicobacter cinaedi CCUG 18818] gi|313144289|ref|ZP_07806482.1| UvrABC system protein C [Helicobacter cinaedi CCUG 18818] gi|313129320|gb|EFR46937.1| UvrABC system protein C [Helicobacter cinaedi CCUG 18818] Length = 627 Score = 346 bits (887), Expect = 7e-93, Method: Composition-based stats. Identities = 177/622 (28%), Positives = 268/622 (43%), Gaps = 64/622 (10%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQ 54 + +P PG+YQ D +LYVGKA NL+ RIKSY N + RI M+SQ Sbjct: 22 LQNLPTQPGIYQYFDKDDNLLYVGKAKNLKNRIKSYFSIHNDIITPKANLSQRIALMVSQ 81 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114 + I +T ++ +AL+LE ++IK LKP++NILLRDDK++PYI I P R + Sbjct: 82 VAKIHTLLTQSQEDALILENSLIKSLKPKYNILLRDDKTYPYIYIDTSATFPRFEITRKA 141 Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 + YFGPF S + ++SL L + C+ QI +C PC Sbjct: 142 LQSKHIEYFGPFVSG--ARELLDSLYDALPLVQKK--SCLKGKKACIFHQIHKCPAPCEN 197 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALS--HI 231 +IS +Y E++ +AK F+ + E + M + +E A RDR+ L Sbjct: 198 KISQSQYAEYITQAKAFIDDRKGLI-EILESKMQILSHNLQFEEAAKIRDRIQKLKTLKT 256 Query: 232 QNHNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ--ILSYF 289 Q+ D + D F L + F G+ + F+ + S N Sbjct: 257 QSIIDIMSGDYDIFLLDSAGQNHILMMLFIRNGRIVSSDFSFIHQEIHSQNLAQLYTQAL 316 Query: 290 LRQFYTDKPCPENILLSEEAEETSLLEISFFK-----QYGYKVKITVPKQGEKRKIIEQA 344 L + T P P +L + E + Q +KIT P++G K +++ A Sbjct: 317 LNHYKTPLPLPPKEILIPHFDFQDKDEKDDLQKILQAQTQSHLKITQPQKGTKYNLLQLA 376 Query: 345 LINAHRSHTQKLSTE---ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVV 401 NA T + + L L +P RIEI+D SH G VG MVV Sbjct: 377 KKNAQEILTLHTKEQKNAQNENTTLYALKDLCNLSQVPYRIEIFDTSHHSGSHNVGGMVV 436 Query: 402 VGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFP 461 F+++ YR+F LH + D+ + M +L RR + N Sbjct: 437 YENGEFIRSAYRRFELHSS-----DEYSQMSEMLTRRAKKFESN---------------- 475 Query: 462 SWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAK-----GPKRSAGMEK-FFVKKG 515 PD+ +LDGGK Q++ A +LK + + II+IAK R+ G + Sbjct: 476 PPPDLWLLDGGKAQINLALDILKSVG--ANVDIIAIAKMKYNAKAYRAKGNALDILRTQN 533 Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEI-NG------IGPLRK 568 L+ D L F Q+LRDE HR+AIT HR +++K + +I G + Sbjct: 534 AEFKLSTNDKRLQFCQKLRDEVHRYAITYHRNKKQKDIHKI--QIQKGSDMDSSYSKAQI 591 Query: 569 RLLLQSFGTVKMISRSSPETLA 590 + LL FG+ + E + Sbjct: 592 KQLLDYFGSFHAFQNAPKEQIE 613 >gi|217076167|ref|YP_002333883.1| excinuclease ABC, C subunit [Thermosipho africanus TCF52B] gi|226732394|sp|B7IEM8|UVRC_THEAB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|217036020|gb|ACJ74542.1| excinuclease ABC, C subunit [Thermosipho africanus TCF52B] Length = 551 Score = 345 bits (886), Expect = 9e-93, Method: Composition-based stats. Identities = 154/604 (25%), Positives = 262/604 (43%), Gaps = 62/604 (10%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + E PGVY + + +Y+GKA NL++R+ S+ + + ++ + N++ + Sbjct: 9 NVSEKPGVYIFKNGS-EYIYIGKAKNLKRRLNSHF--SLKEEKSRLIVEESNSLEVIIVK 65 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 E EALLLEA +I + KP++NI+L++ + +PYI I+D P + R G +FGP Sbjct: 66 NEKEALLLEATLIFKHKPKYNIMLKEGERYPYIRISDDE-YPYVEVTRS-RKSSGIFFGP 123 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F ++ + LQ+ F +R+C +PC+ + +K C PC + YM + Sbjct: 124 FTNITFTRLLLEILQKIFGVRTCKKD-LSKIKKPCIEYHLKTCLAPC-KFENKNIYMSAI 181 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDC 244 + KK LSG +K+ I + MN + D+E+A +RD L + + N I N Sbjct: 182 NNLKKVLSGDFEFVKDYIEQKMNYHSKMLDFENAAKYRDLLLSFEKLLNTQGVILNDK-R 240 Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304 Y + G + E + + +Y K + Sbjct: 241 CVDYIAYSKKVFLVLKVRGGVLLSKLFYEANLSFEE-------FLYQFYYGMKSDLPTKI 293 Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364 ++ E S + + + I V R ++E A N K + Sbjct: 294 VTF--------ESSNLNKIEFDIPINVSLDDSDRYLLEIAYENLKEHFKAKRLRRDT--- 342 Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424 LK + L IP RIE D SH G V +VV +YR++ L Sbjct: 343 -LKKIKEILGLKKIPYRIEGTDISHRNGKFTVASLVVFENGVPKPEEYRRYKLGDIL--- 398 Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484 DD +RM + +R+++ PD++ +DGG+GQ++AA Sbjct: 399 -DDFESIRMFIRKRYTK-------------------HEAPDLIFVDGGRGQVNAAIEAFN 438 Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544 +L ++ + ++ IAK E+ V K + L D +L + +RDE HR A + Sbjct: 439 ELGLD--VDVVGIAKK-------EEIIVTKNKEFKLKENDEVLRTLISIRDETHRVANSF 489 Query: 545 HRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 + K S LD+I GIGP RK++LL+ + +++ I + E L+ I G KIA ++ Sbjct: 490 SGSLKLKNYTLSKLDDIPGIGPKRKKILLKKYKSIENIKNAPLEELSKIVG--NKIALRL 547 Query: 604 YNHF 607 + Sbjct: 548 KEYL 551 >gi|134098708|ref|YP_001104369.1| nuclease subunit of the excinuclease ABC complex [Saccharopolyspora erythraea NRRL 2338] gi|189038083|sp|A4FBL9|UVRC_SACEN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|133911331|emb|CAM01444.1| nuclease subunit of the excinuclease ABC complex [Saccharopolyspora erythraea NRRL 2338] Length = 717 Score = 345 bits (886), Expect = 1e-92, Method: Composition-based stats. Identities = 148/497 (29%), Positives = 226/497 (45%), Gaps = 29/497 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P+ PGVY+ D GRV+YVGKA +L+ R+ SY + R M++ +R+TV Sbjct: 13 TIPDAPGVYRFHDAEGRVIYVGKAKSLRSRLSSYFADLSGLHPRTRQMVTTATGVRWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE + IK PRFN+ RDDKS+P + +T P LY R YFG Sbjct: 73 GTEVEALQLEYSWIKEYDPRFNVRYRDDKSYPVLAVTLHEDFPRLYVTRGPRRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P+A A+ +T++ L R F R+C+ VF+ RPCLL I +CS PC G + ++++ Sbjct: 133 PYAHAWAIRETLDMLLRVFPARTCSAGVFKRHSQIGRPCLLGYIGKCSAPCVGRVDADEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 V + F +G L K+ R M QA+ + ++E A RD L AL + Sbjct: 193 RRIVEDFCDFFAGRTDTLIRKLDREMRQASEELEFERAARLRDDLEALRRAMEKQAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D + ++ A +Q G+ RG + + E+ A + FL QFY ++ Sbjct: 253 DGTDADVIAFADDELAAAVQVFHIRGGRVRGQRGWVIDKVEETGTAALAERFLTQFYGEQ 312 Query: 298 ------------PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQAL 345 P P +L+ E E + G +V + VP++G+KR ++E Sbjct: 313 AALAEQADAGGTPVPREVLVPELPPECEAITEWLSGLRGGRVAVRVPQRGDKRALMETVE 372 Query: 346 INAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVV 401 NA + TQ + L++ L P RIE D SH+ G V +VV Sbjct: 373 RNAKEAFTQYKLRRAGDLTARSAALQELQDALGLDTAPLRIECIDVSHVQGTDVVASLVV 432 Query: 402 VGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN----EENLNFHPKKQE 457 + K++YR+F + D + V+ RRF++ +K +E N Sbjct: 433 FEDGVPRKSEYRRFAVREGAEGG--DVGSIAEVVRRRFARYLKETAPPQEGGNGSAGATA 490 Query: 458 YSFPSWPDVVILDGGKG 474 D V +G G Sbjct: 491 AVENGSTDTVAANGSVG 507 Score = 188 bits (476), Expect = 4e-45, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 87/163 (53%), Gaps = 7/163 (4%) Query: 443 IKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPK 502 + E + F P+++++DGG Q +AA L +L + + + +I IAK + Sbjct: 540 QEAERTGIDPETGRPRKFAYPPNLLVIDGGAPQANAAADALTELGITD-VAVIGIAKRLE 598 Query: 503 RSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP-LDEIN 561 E + + E ++L LY +QR+RD AH FAI HR++R K S LD I Sbjct: 599 -----EVWLPDEAEPVILPRTSEALYLLQRVRDAAHDFAIRYHRQKRSKRMKSSTLDSIP 653 Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 G+G R+ LL+ FG+++ + +++ E ++++ G ++ A ++ Sbjct: 654 GLGEARRTALLKHFGSLRRLRQATVEEISAVPGFGQRTAETVH 696 >gi|317483281|ref|ZP_07942275.1| excinuclease ABC [Bifidobacterium sp. 12_1_47BFAA] gi|316915244|gb|EFV36672.1| excinuclease ABC [Bifidobacterium sp. 12_1_47BFAA] Length = 768 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 169/740 (22%), Positives = 266/740 (35%), Gaps = 138/740 (18%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +P PGVY+ D GRV+YVGKA NL+ R+ +Y R M+ ++ + Sbjct: 34 KTSDIPAKPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYLLHPRTQTMVLTARSLEW 93 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILL---------------------------RDDKS 93 TV TE+E+L LE IK PRFN+ R D Sbjct: 94 TVVATELESLTLEYTWIKEFDPRFNVQFRDDKTYPYLAVSTGERIPRVWVTRSRKRRDTR 153 Query: 94 F--PYILI-TDKHKIPALYKHRDSSTIQGSYF---------GPFASVDAVEK---TINSL 138 + PY + +H + L + T + F FAS+ Sbjct: 154 YFGPYAKVWELRHSLDRLLRTFPVRTCTTNVFHKAQLTGRPCLFASIGKCSAPCVNRIEA 213 Query: 139 QRTFFLRSCADSVFRHR-TRPCLLFQIKRCS-GPCTGEISSEKYMEFVHEAKKFLSGGNH 196 L V R RP + + E + + + + N Sbjct: 214 DEHRRLCEQLVGVMTGRLGRPYIAQLTRDMKEASAELEFEKAARLRDQIQMLETVVQQNA 273 Query: 197 NLKEK--------IARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD----C 244 + ++ A + +A++ Y A R D D Sbjct: 274 VVFDQDVDADVFGFASDELEASVHAFYVRAGSIRGERNWSVERVEDIDDADLMADLLVQV 333 Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK------- 297 +S N + G+ TD+ + RQ T + Sbjct: 334 YSDAAGDNHPQSAATISTNREAIGSTQTITATDAVARAQATRERNTRQETTGRADLLAPI 393 Query: 298 -PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P P I++ E LE G V I V +G+K++++++A NA ++ + Sbjct: 394 APVPREIIVPVEPARREELEGWLTNLRGGAVTIRVASRGDKKQLMDRANENASQALQRSK 453 Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQ 411 + IS + D K L P RIE YD S+ + G V MVV + K++ Sbjct: 454 MSRISDMGARTQAMNDVAKALGLAEAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 513 Query: 412 YRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKNEENLNFHPKK--------------- 455 YR+F + D K DD + + L RRF ++ + Sbjct: 514 YRRFAIRGKDGKGAVDDLSALYETLTRRFKHGNIAGDSGESIDAEQRVASAAGKMTTAVA 573 Query: 456 -----------------------------QEYSFPSWPDV----------------VILD 470 Q + S PD+ V++D Sbjct: 574 AETIAANGNDNGEGGSDISGKGHAVPVGVQNDARESPPDIVQQNTNRHHFAYKPNLVVVD 633 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGK Q+ AA L+ V N + + +AK + E + ++L + +Y + Sbjct: 634 GGKPQVMAAAKALEDCGV-NDVAVCGLAKRLE-----EVWVPDDDYPIILKRQSEGMYLL 687 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 QR+RDE+HRFAIT HR++R+K A S LDEI GIG ++ LL FG+VK + +S E Sbjct: 688 QRVRDESHRFAITYHRQQRRKGALRSALDEIPGIGESYQKRLLNHFGSVKAMREASVEDF 747 Query: 590 ASIEGISKKIACKIYNHFHK 609 ++GI A +YN H+ Sbjct: 748 EKVKGIGHAKAEALYNALHE 767 >gi|23465283|ref|NP_695886.1| excinuclease ABC subunit C [Bifidobacterium longum NCC2705] gi|23325919|gb|AAN24522.1| excinuclease ABC subunit C [Bifidobacterium longum NCC2705] Length = 788 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 169/740 (22%), Positives = 266/740 (35%), Gaps = 138/740 (18%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +P PGVY+ D GRV+YVGKA NL+ R+ +Y R M+ ++ + Sbjct: 54 KTSDIPAKPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYLLHPRTQTMVLTARSLEW 113 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILL---------------------------RDDKS 93 TV TE+E+L LE IK PRFN+ R D Sbjct: 114 TVVATELESLTLEYTWIKEFDPRFNVQFRDDKTYPYLAVSTGERIPRVWVTRSRKRRDTR 173 Query: 94 F--PYILI-TDKHKIPALYKHRDSSTIQGSYF---------GPFASVDAVEK---TINSL 138 + PY + +H + L + T + F FAS+ Sbjct: 174 YFGPYAKVWELRHSLDRLLRTFPVRTCTTNVFHKAQLTGRPCLFASIGKCSAPCVNRIEA 233 Query: 139 QRTFFLRSCADSVFRHR-TRPCLLFQIKRCS-GPCTGEISSEKYMEFVHEAKKFLSGGNH 196 L V R RP + + E + + + + N Sbjct: 234 DEHRRLCEQLVGVMTGRLGRPYIAQLTRDMKEASAELEFEKAARLRDQIQMLETVVQQNA 293 Query: 197 NLKEK--------IARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD----C 244 + ++ A + +A++ Y A R D D Sbjct: 294 VVFDQDVDADVFGFASDELEASVHAFYVRAGSIRGERNWSVERVEDIDDADLMADLLVQV 353 Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK------- 297 +S N + G+ TD+ + RQ T + Sbjct: 354 YSDAAGDNHPQSAATISTNREAIGSTQTITATDAVARAQATRERNTRQETTGRADLLAPI 413 Query: 298 -PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P P I++ E LE G V I V +G+K++++++A NA ++ + Sbjct: 414 APVPREIIVPVEPARREELEGWLTNLRGGAVTIRVASRGDKKQLMDRANENASQALQRSK 473 Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQ 411 + IS + D K L P RIE YD S+ + G V MVV + K++ Sbjct: 474 MSRISDMGARTQAMNDVAKALGLAEAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 533 Query: 412 YRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKNEENLNFHPKK--------------- 455 YR+F + D K DD + + L RRF ++ + Sbjct: 534 YRRFAIRGKDGKGAVDDLSALYETLTRRFKHGNIAGDSGESIDAEQRVASAAGKMTTAVA 593 Query: 456 -----------------------------QEYSFPSWPDV----------------VILD 470 Q + S PD+ V++D Sbjct: 594 AETIAANGNDNGEGGSDISGKGHAVPVGVQNDARESPPDIVQQNTNRHHFAYKPNLVVVD 653 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGK Q+ AA L+ V N + + +AK + E + ++L + +Y + Sbjct: 654 GGKPQVMAAAKALEDCGV-NDVAVCGLAKRLE-----EVWVPDDDYPIILKRQSEGMYLL 707 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 QR+RDE+HRFAIT HR++R+K A S LDEI GIG ++ LL FG+VK + +S E Sbjct: 708 QRVRDESHRFAITYHRQQRRKGALRSALDEIPGIGESYQKRLLNHFGSVKAMREASVEDF 767 Query: 590 ASIEGISKKIACKIYNHFHK 609 ++GI A +YN H+ Sbjct: 768 EKVKGIGHAKAEALYNALHE 787 >gi|203284366|ref|YP_002222106.1| excinuclease ABC, subunit C [Borrelia duttonii Ly] gi|226698344|sp|B5RM14|UVRC_BORDL RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|201083809|gb|ACH93400.1| excinuclease ABC, subunit C [Borrelia duttonii Ly] Length = 602 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 160/608 (26%), Positives = 275/608 (45%), Gaps = 33/608 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E+ P+ G Y+M ++LY+GKA NL+ R+K+Y +H+ +++ + NI Sbjct: 11 QIEKFPKTSGCYKMYSKDNKILYIGKAKNLRSRVKNYFSK-RTSHKTKILMNNVTNIEII 69 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T +E EALLLE N+IK+ KP +NI L+DDK +P I IT K P ++K R Y Sbjct: 70 TTNSEYEALLLECNLIKKYKPTYNIKLKDDKGYPMIRITC-EKYPRIFKTRKIINDGSEY 128 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V ++ ++ + +TF + C PCL F + +C G C E ++Y Sbjct: 129 FGPYVNVKNLDLVLDLINKTFKTKKCKKKSKN----PCLYFHMGQCLGVCYREDLEDEYR 184 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYE---SAIIHRDRLAALSHIQNHNDSI 238 + + + K L+G L I M + +KE++E + L +S Q Sbjct: 185 KEIEQIKHILNGNISKLLNDIEIKMKEVIMKENFEAAIKLKETKKSLIEISQTQIITKID 244 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D ++ +L I + G+ F ++ E + Sbjct: 245 KLSEDYLYIHKTNSLNTIVILKYKDGKLTEKDIHFDESIYEEDELIEKFITQYYTSPNMI 304 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P+ I + ++ + +++ ++ + I Q + IIE A NA + Sbjct: 305 VPDKIHIFKKIDTSNITKLINELKNIKTEIIYKETQDNIK-IIEMATSNAKLALITYNHE 363 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + +++ + +PK IE +D +HI G V +V K+ YR + ++ Sbjct: 364 KNK---AIENLKTILEMKKLPKTIEGFDIAHINGYKTVASLVTFKMGKPFKDGYRVYKIN 420 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 DDC ++ V+ RR+S+LI + L PD++++DGGKGQL+A Sbjct: 421 SLSNGEIDDCKAIKEVISRRYSKLINEQLKL--------------PDLILIDGGKGQLNA 466 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A +LK L +E +I I ++AK + F K + + L R+ L +Q +RDEAH Sbjct: 467 AYSILKGLRIEEKIAICALAKKEEI-----IFLPNKNQGIKLQKRNSALQVLQNVRDEAH 521 Query: 539 RFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 R A + K + +I GIG + + +L+ GT K I + + +A+ I+ Sbjct: 522 RRANNFNNKLHNNIKLNY-TKIKGIGEQKAKKILKVLGTYKDILLLNEDEIATKMKINIT 580 Query: 599 IACKIYNH 606 +A KI Sbjct: 581 MANKIKKF 588 >gi|203287900|ref|YP_002222915.1| excinuclease ABC, subunit C [Borrelia recurrentis A1] gi|226698345|sp|B5RRR0|UVRC_BORRA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|201085120|gb|ACH94694.1| excinuclease ABC, subunit C [Borrelia recurrentis A1] Length = 602 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 160/608 (26%), Positives = 276/608 (45%), Gaps = 33/608 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E+ P+ G Y+M ++LY+GKA NL+ R+K+Y +H+ +++ + NI Sbjct: 11 QIEKFPKTSGCYKMYSKDNKILYIGKAKNLRSRVKNYFSK-RTSHKTKILMNNVTNIEII 69 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T +E EALLLE N+IK+ KP +NI L+DDK +P I IT K P ++K R Y Sbjct: 70 TTNSEYEALLLECNLIKKYKPTYNIKLKDDKGYPMIRITC-EKYPRIFKTRKIINDGSEY 128 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V ++ ++ + +TF + C PCL F + +C G C E ++Y Sbjct: 129 FGPYVNVKNLDLVLDLINKTFKTKKCKKKSKN----PCLYFHMGQCLGVCYREDLEDEYR 184 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYE---SAIIHRDRLAALSHIQNHNDSI 238 + + + K L+G L I M + +KE++E + L +S Q Sbjct: 185 KEIEQIKHILNGNISKLLNDIEIKMKEVIMKENFEAAIKLKETKKSLIEISQTQIITKID 244 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D ++ +L I + G+ F ++ E + Sbjct: 245 KLSEDYLYIHKTNSLNTIVILKYKDGKLTEKDIHFDESIYEEDELIEKFITQYYTSPNMI 304 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P+ I + ++ + +++ + K +I + + KIIE A NA + Sbjct: 305 VPDKIHIFKKIDTSNIT-KLINELKNIKTEIIYKETKDNIKIIEMATSNAKLALITYNHE 363 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + +++ + +PK IE +D +HI G V +V K+ YR + ++ Sbjct: 364 KNK---AIENLKTILEMKKLPKTIEGFDIAHINGYKTVASLVTFKMGKPFKDGYRVYKIN 420 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 DDC ++ V+ RR+S+LI + L PD++++DGGKGQL++ Sbjct: 421 SLSNGEIDDCKAIKEVISRRYSKLINEQLKL--------------PDLILIDGGKGQLNS 466 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A +LK L +E +I I ++AK + F K + + L R+ L +Q +RDEAH Sbjct: 467 AYSILKGLRIEEKIAICALAKKEEI-----IFLPNKNQGIKLQKRNSALQVLQNVRDEAH 521 Query: 539 RFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 R A + K + +I GIG + + +L+ GT K I + + +A+ I+ Sbjct: 522 RRANNFNNKLHNNIKLNY-TKIKGIGEQKAKKILKVLGTYKDILLLNEDEIATKMKINIT 580 Query: 599 IACKIYNH 606 +A KI Sbjct: 581 MANKIKKF 588 >gi|213691965|ref|YP_002322551.1| excinuclease ABC, C subunit [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523426|gb|ACJ52173.1| excinuclease ABC, C subunit [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458074|dbj|BAJ68695.1| excinuclease ABC subunit C [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 788 Score = 344 bits (882), Expect = 3e-92, Method: Composition-based stats. Identities = 167/740 (22%), Positives = 262/740 (35%), Gaps = 138/740 (18%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +P PGVY+ D GRV+YVGKA NL+ R+ +Y R M+ ++ + Sbjct: 54 KTSDIPTKPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYLLHPRTQTMVLTARSLEW 113 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILL---------------------------RDDKS 93 TV TE+E+L LE IK PRFN+ R D Sbjct: 114 TVVATELESLTLEYTWIKEFDPRFNVQFRDDKTYPYLAVSTGERIPRVWVTRSRKRRDTR 173 Query: 94 F--PYILI-TDKHKIPALYKHRDSSTIQGSYF---------GPFASVDAVEK---TINSL 138 + PY + +H + L + T S F FAS+ Sbjct: 174 YFGPYAKVWELRHSLDRLLRTFPVRTCTTSVFHKAQLTGRPCLFASIGKCSAPCVNRIEA 233 Query: 139 QRTFFLRSCADSVFRHR-TRPCLLFQIKRCS-GPCTGEISSEKYMEFVHEAKKFLSGGNH 196 L V R RP + + E + + + + N Sbjct: 234 DEHRRLCEQLVGVMTGRLGRPYIAQLTRDMKEASAELEFEKAARLRDQIQMLETVVQQNA 293 Query: 197 NLKEK--------IARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD----C 244 + ++ A + +A++ Y A R D D Sbjct: 294 VVFDQDVDADVFGFASDELEASVHAFYVRAGSIRGERNWSVERVEDIDDADLMADLLAQV 353 Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK------- 297 +S N + G+ D+ + RQ T + Sbjct: 354 YSDAAGDNHPQSAATISTNREAIGSTQTITAADAVARAQATRERNTRQETTGRADLLAPI 413 Query: 298 -PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P P I++ E LE G V I V +G+K++++ +A NA ++ + Sbjct: 414 APVPREIIVPVEPARREELEGWLTNLRGGAVTIRVASRGDKKQLMGRANENASQALQRSK 473 Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQ 411 + IS + D K L P RIE YD S+ + G V MVV + K++ Sbjct: 474 MSRISDMGARTQAMNDVAKALGLAEAPLRIECYDISNTVGGAFQVSSMVVFEDAIAKKSE 533 Query: 412 YRKFNLHPNDVKT-QDDCAMMRMVLERRFSQ----------------------------- 441 YR+F + D K D + + L RRF Sbjct: 534 YRRFAIRGKDGKGAVGDLSALYETLTRRFKHGNIAGDSGESIDAEQRAASAAGKMTTAVA 593 Query: 442 ---LIKNEENLNFHPKKQEYSFPSWPD----------------------------VVILD 470 + N + + + PD +V++D Sbjct: 594 AETIAANGNDNGENGSDISGKGHAVPDGVQNDTRETSPDIVQQNTNRHHFAYKPNLVVVD 653 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGK Q+ AA L+ V N + + +AK + E + ++L + +Y + Sbjct: 654 GGKPQVMAAAKALEDCGV-NDVAVCGLAKRLE-----EVWVPDDDYPIILKRQSEGMYLL 707 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 QR+RDE+HRFAIT HR++R+K A S LDEI GIG ++ LL FG+VK + +S E Sbjct: 708 QRVRDESHRFAITYHRQQRRKGALRSALDEIPGIGKSYQKRLLNHFGSVKAMREASVEDF 767 Query: 590 ASIEGISKKIACKIYNHFHK 609 ++GI A +YN H+ Sbjct: 768 EKVKGIGHAKAEALYNALHE 787 >gi|119367628|sp|Q8G6E0|UVRC_BIFLO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C Length = 746 Score = 344 bits (882), Expect = 3e-92, Method: Composition-based stats. Identities = 169/740 (22%), Positives = 266/740 (35%), Gaps = 138/740 (18%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +P PGVY+ D GRV+YVGKA NL+ R+ +Y R M+ ++ + Sbjct: 12 KTSDIPAKPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYLLHPRTQTMVLTARSLEW 71 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILL---------------------------RDDKS 93 TV TE+E+L LE IK PRFN+ R D Sbjct: 72 TVVATELESLTLEYTWIKEFDPRFNVQFRDDKTYPYLAVSTGERIPRVWVTRSRKRRDTR 131 Query: 94 F--PYILI-TDKHKIPALYKHRDSSTIQGSYF---------GPFASVDAVEK---TINSL 138 + PY + +H + L + T + F FAS+ Sbjct: 132 YFGPYAKVWELRHSLDRLLRTFPVRTCTTNVFHKAQLTGRPCLFASIGKCSAPCVNRIEA 191 Query: 139 QRTFFLRSCADSVFRHR-TRPCLLFQIKRCS-GPCTGEISSEKYMEFVHEAKKFLSGGNH 196 L V R RP + + E + + + + N Sbjct: 192 DEHRRLCEQLVGVMTGRLGRPYIAQLTRDMKEASAELEFEKAARLRDQIQMLETVVQQNA 251 Query: 197 NLKEK--------IARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD----C 244 + ++ A + +A++ Y A R D D Sbjct: 252 VVFDQDVDADVFGFASDELEASVHAFYVRAGSIRGERNWSVERVEDIDDADLMADLLVQV 311 Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK------- 297 +S N + G+ TD+ + RQ T + Sbjct: 312 YSDAAGDNHPQSAATISTNREAIGSTQTITATDAVARAQATRERNTRQETTGRADLLAPI 371 Query: 298 -PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P P I++ E LE G V I V +G+K++++++A NA ++ + Sbjct: 372 APVPREIIVPVEPARREELEGWLTNLRGGAVTIRVASRGDKKQLMDRANENASQALQRSK 431 Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQ 411 + IS + D K L P RIE YD S+ + G V MVV + K++ Sbjct: 432 MSRISDMGARTQAMNDVAKALGLAEAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 491 Query: 412 YRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKNEENLNFHPKK--------------- 455 YR+F + D K DD + + L RRF ++ + Sbjct: 492 YRRFAIRGKDGKGAVDDLSALYETLTRRFKHGNIAGDSGESIDAEQRVASAAGKMTTAVA 551 Query: 456 -----------------------------QEYSFPSWPDV----------------VILD 470 Q + S PD+ V++D Sbjct: 552 AETIAANGNDNGEGGSDISGKGHAVPVGVQNDARESPPDIVQQNTNRHHFAYKPNLVVVD 611 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGK Q+ AA L+ V N + + +AK + E + ++L + +Y + Sbjct: 612 GGKPQVMAAAKALEDCGV-NDVAVCGLAKRLE-----EVWVPDDDYPIILKRQSEGMYLL 665 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 QR+RDE+HRFAIT HR++R+K A S LDEI GIG ++ LL FG+VK + +S E Sbjct: 666 QRVRDESHRFAITYHRQQRRKGALRSALDEIPGIGESYQKRLLNHFGSVKAMREASVEDF 725 Query: 590 ASIEGISKKIACKIYNHFHK 609 ++GI A +YN H+ Sbjct: 726 EKVKGIGHAKAEALYNALHE 745 >gi|296454218|ref|YP_003661361.1| excinuclease ABC subunit C [Bifidobacterium longum subsp. longum JDM301] gi|296183649|gb|ADH00531.1| excinuclease ABC, C subunit [Bifidobacterium longum subsp. longum JDM301] Length = 788 Score = 344 bits (882), Expect = 3e-92, Method: Composition-based stats. Identities = 168/740 (22%), Positives = 267/740 (36%), Gaps = 138/740 (18%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +P PGVY+ D GRV+YVGKA NL+ R+ +Y R M+ ++ + Sbjct: 54 KTSDIPAKPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYLLHPRTQTMVLTARSLEW 113 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILL---------------------------RDDKS 93 TV TE+E+L LE IK PRFN+ R D Sbjct: 114 TVVATELESLTLEYTWIKEFDPRFNVQFRDDKTYPYLAVSTGERIPRVWVTRSRKRRDTR 173 Query: 94 F--PYILI-TDKHKIPALYKHRDSSTIQGSYF---------GPFASVDAVEK---TINSL 138 + PY + +H + L + T + F FAS+ Sbjct: 174 YFGPYAKVWELRHSLDRLLRTFPVRTCTTNVFHKAQLTGRPCLFASIGKCSAPCVNRIEA 233 Query: 139 QRTFFLRSCADSVFRHR-TRPCLLFQIKRCS-GPCTGEISSEKYMEFVHEAKKFLSGGNH 196 L V R RP + + E + + + + N Sbjct: 234 DEHRRLCEQLVGVMTGRLGRPYIAQLTRDMKEASAELEFEKAARLRDQIQMLETVVQQNA 293 Query: 197 NLKEK--------IARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD----C 244 + ++ A + +A++ Y A R D D Sbjct: 294 VVFDQDVDADVFGFASDELEASVHAFYVRAGSIRGERNWSVERVEDIDDADLMADLLVQV 353 Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK------- 297 +S N + G+ TD+ + RQ T + Sbjct: 354 YSDAAGDNHPQSAATISTNREAIGSTQTITATDAVARAQATRERNTRQETTGRADLLAPI 413 Query: 298 -PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P P I++ E LE G V I V +G+K++++++A NA ++ + Sbjct: 414 APVPREIIVPVEPARREELEGWLTNLRGGAVTIRVASRGDKKQLMDRANENASQALQRSK 473 Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQ 411 + IS + D K L P RIE YD S+ + G V MVV + K++ Sbjct: 474 MSRISDMGARTQAMNDVAKALGLAQAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 533 Query: 412 YRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKNEENLNFHPKK--------------- 455 YR+F + D K DD + + L RRF ++ + Sbjct: 534 YRRFAVRGKDGKGAVDDLSALYETLTRRFRHGNIAGDSGESIDAEQRAASAAGKMTTVVA 593 Query: 456 -----------------------------QEYSFPSWPDVV----------------ILD 470 Q ++ S PD+V ++D Sbjct: 594 AETIVANGNDNGEGGSDISGKGHAVPVGVQNDAWESSPDIVQQNTNRHHFAYTPNLVVVD 653 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGK Q+ AA L+ V + + + +AK + E + ++L + +Y + Sbjct: 654 GGKPQVMAAAKALEDCGVID-VAVCGLAKRLE-----EVWVPDDDYPIILKRQSEGMYLL 707 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 QR+RDE+HRFAIT HR++R+K A S LDEI GIG ++ LL FG+VK + +S E Sbjct: 708 QRVRDESHRFAITYHRQQRRKGALRSALDEIPGIGESYQKRLLNHFGSVKAMREASVEDF 767 Query: 590 ASIEGISKKIACKIYNHFHK 609 ++GI A +YN H+ Sbjct: 768 EKVKGIGHAKAEALYNALHE 787 >gi|322689285|ref|YP_004209019.1| excinuclease ABC subunit C [Bifidobacterium longum subsp. infantis 157F] gi|320460621|dbj|BAJ71241.1| excinuclease ABC subunit C [Bifidobacterium longum subsp. infantis 157F] Length = 788 Score = 343 bits (880), Expect = 5e-92, Method: Composition-based stats. Identities = 168/740 (22%), Positives = 265/740 (35%), Gaps = 138/740 (18%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +P PGVY+ D GRV+YVGKA NL+ R+ +Y R M+ ++ + Sbjct: 54 KTSDIPAKPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYLLHPRTQTMVLTARSLEW 113 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILL---------------------------RDDKS 93 TV TE+E+L LE IK PRFN+ R D Sbjct: 114 TVVATELESLTLEYTWIKEFDPRFNVQFRDDKTYPYLAVSTGERIPRVWVTRSRKRRDTR 173 Query: 94 F--PYILI-TDKHKIPALYKHRDSSTIQGSYF---------GPFASVDAVEK---TINSL 138 + PY + +H + L + T + F FAS+ Sbjct: 174 YFGPYAKVWELRHSLDRLLRTFPVRTCTTNVFHKAQLTGRPCLFASIGKCSAPCVNRIEA 233 Query: 139 QRTFFLRSCADSVFRHR-TRPCLLFQIKRCS-GPCTGEISSEKYMEFVHEAKKFLSGGNH 196 L V R RP + + E + + + + N Sbjct: 234 DEHRRLCEQLVGVMTGRLGRPYIAQLTRDMKEASAELEFEKAARLRDQIQMLETVVQQNA 293 Query: 197 NLKEK--------IARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD----C 244 + ++ A + +A++ Y A R D D Sbjct: 294 VVFDQDVDADVFGFASDELEASVHAFYVRAGSIRGERNWSVERVEDIDDADLMADLLVQV 353 Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK------- 297 +S N + G+ TD+ + RQ T + Sbjct: 354 YSDAAGDNHPQSAATISTNREAIGSTQTITATDAVARAQATRERNTRQETTGRADLLAPI 413 Query: 298 -PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P P I++ E LE G V I V +G+K++++++A NA ++ + Sbjct: 414 APVPREIIVPVEPARREELEGWLTNLRGGAVTIRVASRGDKKQLMDRANENASQALQRSK 473 Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQ 411 + IS + D K L P RIE YD S+ + G V MVV + K++ Sbjct: 474 MSRISDMGARTQAMNDVAKALGLAEAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 533 Query: 412 YRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKNEENLNFHPKK--------------- 455 YR+F + D K DD + + L RRF ++ + Sbjct: 534 YRRFAIRGKDGKGAVDDLSALYETLTRRFKHGNIAGDSGESIDAEQRVASAAGKMTTAVA 593 Query: 456 -----------------------------QEYSFPSWPDV----------------VILD 470 Q + S PD+ V++D Sbjct: 594 AETIAANGNDNGEGGSDISGKGHAVPVGVQNDARESPPDIVQQNTNRHHFAYKPNLVVVD 653 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGK Q+ AA L+ V N + + +AK + E + ++L + +Y + Sbjct: 654 GGKPQVMAAAKALEDCGV-NDVAVCGLAKRLE-----EVWVPDDDYPIILKRQSEGMYLL 707 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 QR+RDE+HRFAIT HR++R+K A S LDEI GIG ++ LL FG+VK + +S E Sbjct: 708 QRVRDESHRFAITYHRQQRRKGALRSALDEIPGIGESYQKRLLNHFGSVKAMREASVEDF 767 Query: 590 ASIEGISKKIACKIYNHFHK 609 ++GI A +Y H+ Sbjct: 768 EKVKGIGHAKAEALYTALHE 787 >gi|322691297|ref|YP_004220867.1| excinuclease ABC subunit C [Bifidobacterium longum subsp. longum JCM 1217] gi|320456153|dbj|BAJ66775.1| excinuclease ABC subunit C [Bifidobacterium longum subsp. longum JCM 1217] Length = 788 Score = 343 bits (880), Expect = 5e-92, Method: Composition-based stats. Identities = 168/740 (22%), Positives = 265/740 (35%), Gaps = 138/740 (18%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +P PGVY+ D GRV+YVGKA NL+ R+ +Y R M+ ++ + Sbjct: 54 KTSDIPAKPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYLLHPRTQTMVLTARSLEW 113 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILL---------------------------RDDKS 93 TV TE+E+L LE IK PRFN+ R D Sbjct: 114 TVVATELESLTLEYTWIKEFDPRFNVQFRDDKTYPYLAVSTGERIPRVWVTRSRKRRDTR 173 Query: 94 F--PYILI-TDKHKIPALYKHRDSSTIQGSYF---------GPFASVDAVEK---TINSL 138 + PY + +H + L + T + F FAS+ Sbjct: 174 YFGPYAKVWELRHSLDRLLRTFPVRTCTTNVFHKAQLTGRPCLFASIGKCSAPCVNRIEA 233 Query: 139 QRTFFLRSCADSVFRHR-TRPCLLFQIKRCS-GPCTGEISSEKYMEFVHEAKKFLSGGNH 196 L V R RP + + E + + + + N Sbjct: 234 DEHRRLCEQLVGVMTGRLGRPYIAQLTRDMKEASAELEFEKAARLRDQIQMLETVVQQNA 293 Query: 197 NLKEK--------IARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD----C 244 + ++ A + +A++ Y A R D D Sbjct: 294 VVFDQDVDADVFGFASDELEASVHAFYVRAGSIRGERNWSVERVEDIDDADLMADLLVQV 353 Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK------- 297 +S N + G+ TD+ + RQ T + Sbjct: 354 YSDAAGDNHPQSAATISTNREAIGSTQTITATDAVARAQATRERNTRQETTGRADLLAPI 413 Query: 298 -PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P P I++ E LE G V I V +G+K++++++A NA ++ + Sbjct: 414 APVPREIIVPVEPARREELEGWLTNLRGGAVTIRVASRGDKKQLMDRANENASQALQRSK 473 Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQ 411 + IS + D K L P RIE YD S+ + G V MVV + K++ Sbjct: 474 MSRISDMGARTQAMNDVAKALGLAEAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 533 Query: 412 YRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKNEENLNFHPKK--------------- 455 YR+F + D K DD + + L RRF ++ + Sbjct: 534 YRRFAIRGKDGKGAVDDLSALYETLTRRFKHGNIAGDSGESIDAEQRVASAAGKMTTAVA 593 Query: 456 -----------------------------QEYSFPSWPDV----------------VILD 470 Q + S PD+ V++D Sbjct: 594 AETIAANGNDNGEGGSGISGKGHAVPVGVQNDARESPPDIVQQNTNRHHFAYKPNLVVVD 653 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGK Q+ AA L+ V N + + +AK + E + ++L + +Y + Sbjct: 654 GGKPQVMAAAKALEDCGV-NDVAVCGLAKRLE-----EVWVPDDDYPIILKRQSEGMYLL 707 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 QR+RDE+HRFAIT HR++R+K A S LDEI GIG ++ LL FG+VK + +S E Sbjct: 708 QRVRDESHRFAITYHRQQRRKGALRSALDEIPGIGESYQKRLLNHFGSVKAMREASVEDF 767 Query: 590 ASIEGISKKIACKIYNHFHK 609 ++GI A +Y H+ Sbjct: 768 EKVKGIGHAKAEALYTALHE 787 >gi|239621396|ref|ZP_04664427.1| excinuclease ABC subunit C [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515857|gb|EEQ55724.1| excinuclease ABC subunit C [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 768 Score = 343 bits (880), Expect = 5e-92, Method: Composition-based stats. Identities = 168/740 (22%), Positives = 265/740 (35%), Gaps = 138/740 (18%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +P PGVY+ D GRV+YVGKA NL+ R+ +Y R M+ ++ + Sbjct: 34 KTSDIPAKPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYLLHPRTQTMVLTARSLEW 93 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILL---------------------------RDDKS 93 TV TE+E+L LE IK PRFN+ R D Sbjct: 94 TVVATELESLTLEYTWIKEFDPRFNVQFRDDKTYPYLAVSTGERIPRVWVTRSRKRRDTR 153 Query: 94 F--PYILI-TDKHKIPALYKHRDSSTIQGSYF---------GPFASVDAVEK---TINSL 138 + PY + +H + L + T + F FAS+ Sbjct: 154 YFGPYAKVWELRHSLDRLLRTFPVRTCTTNVFHKAQLTGRPCLFASIGKCSAPCVNRIEA 213 Query: 139 QRTFFLRSCADSVFRHR-TRPCLLFQIKRCS-GPCTGEISSEKYMEFVHEAKKFLSGGNH 196 L V R RP + + E + + + + N Sbjct: 214 DEHRRLCEQLVGVMTGRLGRPYIAQLTRDMKEASAELEFEKAARLRDQIQMLETVVQQNA 273 Query: 197 NLKEK--------IARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD----C 244 + ++ A + +A++ Y A R D D Sbjct: 274 VVFDQDVDADVFGFASDELEASVHAFYVRAGSIRGERNWSVERVEDIDDADLMADLLVQV 333 Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK------- 297 +S N + G+ TD+ + RQ T + Sbjct: 334 YSDAAGDNHPQSAATISTNREAIGSTQTITATDAVARAQATRERNTRQETTGRADLLAPI 393 Query: 298 -PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P P I++ E LE G V I V +G+K++++++A NA ++ + Sbjct: 394 APVPREIIVPVEPARREELEGWLTNLRGGAVTIRVASRGDKKQLMDRANENASQALQRSK 453 Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQ 411 + IS + D K L P RIE YD S+ + G V MVV + K++ Sbjct: 454 MSRISDMGARTQAMNDVAKALGLAEAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 513 Query: 412 YRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKNEENLNFHPKK--------------- 455 YR+F + D K DD + + L RRF ++ + Sbjct: 514 YRRFAIRGKDGKGAVDDLSALYETLTRRFKHGNIAGDSGESIDAEQRVASAAGKMTTAVA 573 Query: 456 -----------------------------QEYSFPSWPDV----------------VILD 470 Q + S PD+ V++D Sbjct: 574 AETIAANGNDNGEGGSDISGKGHAVPVGVQNDARESPPDIVQQNTNRHHFAYKPNLVVVD 633 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGK Q+ AA L+ V N + + +AK + E + ++L + +Y + Sbjct: 634 GGKPQVMAAAKALEDCGV-NDVAVCGLAKRLE-----EVWVPDDDYPIILKRQSEGMYLL 687 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 QR+RDE+HRFAIT HR++R+K A S LDEI GIG ++ LL FG+VK + +S E Sbjct: 688 QRVRDESHRFAITYHRQQRRKGALRSALDEIPGIGESYQKRLLNHFGSVKAMREASVEDF 747 Query: 590 ASIEGISKKIACKIYNHFHK 609 ++GI A +Y H+ Sbjct: 748 EKVKGIGHAKAEALYTALHE 767 >gi|227547282|ref|ZP_03977331.1| Nuclease subunit of the excinuclease complex [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212241|gb|EEI80137.1| Nuclease subunit of the excinuclease complex [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 788 Score = 343 bits (880), Expect = 5e-92, Method: Composition-based stats. Identities = 168/740 (22%), Positives = 265/740 (35%), Gaps = 138/740 (18%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +P PGVY+ D GRV+YVGKA NL+ R+ +Y R M+ ++ + Sbjct: 54 KTSDIPAKPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYLLHPRTQTMVLTARSLEW 113 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILL---------------------------RDDKS 93 TV TE+E+L LE IK PRFN+ R D Sbjct: 114 TVVATELESLTLEYTWIKEFDPRFNVQFRDDKTYPYLAVSTGERIPRVWVTRSRKRRDTR 173 Query: 94 F--PYILI-TDKHKIPALYKHRDSSTIQGSYF---------GPFASVDAVEK---TINSL 138 + PY + +H + L + T + F FAS+ Sbjct: 174 YFGPYAKVWELRHSLDRLLRTFPVRTCTTNVFHKAQLTGRPCLFASIGKCSAPCVNRIEA 233 Query: 139 QRTFFLRSCADSVFRHR-TRPCLLFQIKRCS-GPCTGEISSEKYMEFVHEAKKFLSGGNH 196 L V R RP + + E + + + + N Sbjct: 234 DEHRRLCEQLVGVMTGRLGRPYIAQLTRDMKEASAELEFEKAARLRDQIQMLETVVQQNA 293 Query: 197 NLKEK--------IARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD----C 244 + ++ A + +A++ Y A R D D Sbjct: 294 VVFDQDVDADVFGFASDELEASVHAFYVRAGSIRGERNWSVERVEDIDDADLMADLLVQV 353 Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK------- 297 +S N + G+ TD+ + RQ T + Sbjct: 354 YSDAAGDNHPQSAATISTNREAIGSTQTITATDAVARAQATRERNTRQETTGRADLLAPI 413 Query: 298 -PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P P I++ E LE G V I V +G+K++++++A NA ++ + Sbjct: 414 APVPREIIVPVEPARREELEGWLTNLRGGAVTIRVASRGDKKQLMDRANENASQALQRSK 473 Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQ 411 + IS + D K L P RIE YD S+ + G V MVV + K++ Sbjct: 474 MSRISDMGARTQAMNDVAKALGLAEAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 533 Query: 412 YRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKNEENLNFHPKK--------------- 455 YR+F + D K DD + + L RRF ++ + Sbjct: 534 YRRFAIRGKDGKGAVDDLSALYETLTRRFKHGNIAGDSGESIDAEQRVASAAGKMTTAVA 593 Query: 456 -----------------------------QEYSFPSWPDV----------------VILD 470 Q + S PD+ V++D Sbjct: 594 AETIAANGNDNGEGGSDISGKGHAVPVGVQNDARESPPDIVQQNTNRHHFAYKPNLVVVD 653 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGK Q+ AA L+ V N + + +AK + E + ++L + +Y + Sbjct: 654 GGKPQVMAAAKALEDCGV-NDVAVCGLAKRLE-----EVWVPDDDYPIILKRQSEGMYLL 707 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 QR+RDE+HRFAIT HR++R+K A S LDEI GIG ++ LL FG+VK + +S E Sbjct: 708 QRVRDESHRFAITYHRQQRRKGALRSALDEIPGIGESYQKRLLNHFGSVKAMREASVEDF 767 Query: 590 ASIEGISKKIACKIYNHFHK 609 ++GI A +Y H+ Sbjct: 768 EKVKGIGHAKAEALYTALHE 787 >gi|23335147|ref|ZP_00120385.1| COG0322: Nuclease subunit of the excinuclease complex [Bifidobacterium longum DJO10A] Length = 839 Score = 343 bits (880), Expect = 5e-92, Method: Composition-based stats. Identities = 168/740 (22%), Positives = 265/740 (35%), Gaps = 138/740 (18%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +P PGVY+ D GRV+YVGKA NL+ R+ +Y R M+ ++ + Sbjct: 105 KTSDIPAKPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYLLHPRTQTMVLTARSLEW 164 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILL---------------------------RDDKS 93 TV TE+E+L LE IK PRFN+ R D Sbjct: 165 TVVATELESLTLEYTWIKEFDPRFNVQFRDDKTYPYLAVSTGERIPRVWVTRSRKRRDTR 224 Query: 94 F--PYILI-TDKHKIPALYKHRDSSTIQGSYF---------GPFASVDAVEK---TINSL 138 + PY + +H + L + T + F FAS+ Sbjct: 225 YFGPYAKVWELRHSLDRLLRTFPVRTCTTNVFHKAQLTGRPCLFASIGKCSAPCVNRIEA 284 Query: 139 QRTFFLRSCADSVFRHR-TRPCLLFQIKRCS-GPCTGEISSEKYMEFVHEAKKFLSGGNH 196 L V R RP + + E + + + + N Sbjct: 285 DEHRRLCEQLVGVMTGRLGRPYIAQLTRDMKEASAELEFEKAARLRDQIQMLETVVQQNA 344 Query: 197 NLKEK--------IARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD----C 244 + ++ A + +A++ Y A R D D Sbjct: 345 VVFDQDVDADVFGFASDELEASVHAFYVRAGSIRGERNWSVERVEDIDDADLMADLLVQV 404 Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK------- 297 +S N + G+ TD+ + RQ T + Sbjct: 405 YSDAAGDNHPQSAATISTNREAIGSTQTITATDAVARAQATRERNTRQETTGRADLLAPI 464 Query: 298 -PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P P I++ E LE G V I V +G+K++++++A NA ++ + Sbjct: 465 APVPREIIVPVEPARREELEGWLTNLRGGAVTIRVASRGDKKQLMDRANENASQALQRSK 524 Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQ 411 + IS + D K L P RIE YD S+ + G V MVV + K++ Sbjct: 525 MSRISDMGARTQAMNDVAKALGLAEAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 584 Query: 412 YRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKNEENLNFHPKK--------------- 455 YR+F + D K DD + + L RRF ++ + Sbjct: 585 YRRFAIRGKDGKGAVDDLSALYETLTRRFKHGNIAGDSGESIDAEQRVASAAGKMTTAVA 644 Query: 456 -----------------------------QEYSFPSWPDV----------------VILD 470 Q + S PD+ V++D Sbjct: 645 AETIAANGNDNGEGGSDISGKGHAVPVGVQNDARESPPDIVQQNTNRHHFAYKPNLVVVD 704 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGK Q+ AA L+ V N + + +AK + E + ++L + +Y + Sbjct: 705 GGKPQVMAAAKALEDCGV-NDVAVCGLAKRLE-----EVWVPDDDYPIILKRQSEGMYLL 758 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 QR+RDE+HRFAIT HR++R+K A S LDEI GIG ++ LL FG+VK + +S E Sbjct: 759 QRVRDESHRFAITYHRQQRRKGALRSALDEIPGIGESYQKRLLNHFGSVKAMREASVEDF 818 Query: 590 ASIEGISKKIACKIYNHFHK 609 ++GI A +Y H+ Sbjct: 819 EKVKGIGHAKAEALYTALHE 838 >gi|254672092|emb|CBA04769.1| putative excinuclease ABC subunit C [Neisseria meningitidis alpha275] Length = 489 Score = 342 bits (878), Expect = 7e-92, Method: Composition-based stats. Identities = 150/463 (32%), Positives = 243/463 (52%), Gaps = 14/463 (3%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P+ PGVY+ D G+VLYVGKA NL++R+ Y N+H+ RI M+ Q+++I T+ Sbjct: 28 LKNLPKLPGVYRFFDEGGKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 87 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N+IK L P++NIL RDDKS+PY++++ H+ P + +R + YF Sbjct: 88 TRSEAEALILENNLIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 146 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GP+ + +AV +I LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y + Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 206 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236 V +A FL+G L + M A +E A +RD+ + + I + N Sbjct: 207 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 266 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294 + N +D +L + + C+ G++ G +FF T ++ F+ Q Y Sbjct: 267 NNPNDIDLLALAVSDGIVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 K P+ ++ L+ + ++G +++ GE++ ++ A NA + Q Sbjct: 327 LGKSKPD--IIINNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 384 Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + + + Q + + K + R+E +D SH G + + VV E +QYR Sbjct: 385 RRLQQSNQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQ 456 ++N+ K DD A MR VL RR+ ++ + E N + Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGETRQMAR 485 >gi|189439291|ref|YP_001954372.1| excinuclease ABC subunit C [Bifidobacterium longum DJO10A] gi|312132666|ref|YP_004000005.1| uvrc [Bifidobacterium longum subsp. longum BBMN68] gi|229558015|sp|B3DRV5|UVRC_BIFLD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|189427726|gb|ACD97874.1| Excinuclease Nuclease subunit [Bifidobacterium longum DJO10A] gi|311773620|gb|ADQ03108.1| UvrC [Bifidobacterium longum subsp. longum BBMN68] Length = 746 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 168/740 (22%), Positives = 265/740 (35%), Gaps = 138/740 (18%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +P PGVY+ D GRV+YVGKA NL+ R+ +Y R M+ ++ + Sbjct: 12 KTSDIPAKPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYLLHPRTQTMVLTARSLEW 71 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILL---------------------------RDDKS 93 TV TE+E+L LE IK PRFN+ R D Sbjct: 72 TVVATELESLTLEYTWIKEFDPRFNVQFRDDKTYPYLAVSTGERIPRVWVTRSRKRRDTR 131 Query: 94 F--PYILI-TDKHKIPALYKHRDSSTIQGSYF---------GPFASVDAVEK---TINSL 138 + PY + +H + L + T + F FAS+ Sbjct: 132 YFGPYAKVWELRHSLDRLLRTFPVRTCTTNVFHKAQLTGRPCLFASIGKCSAPCVNRIEA 191 Query: 139 QRTFFLRSCADSVFRHR-TRPCLLFQIKRCS-GPCTGEISSEKYMEFVHEAKKFLSGGNH 196 L V R RP + + E + + + + N Sbjct: 192 DEHRRLCEQLVGVMTGRLGRPYIAQLTRDMKEASAELEFEKAARLRDQIQMLETVVQQNA 251 Query: 197 NLKEK--------IARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD----C 244 + ++ A + +A++ Y A R D D Sbjct: 252 VVFDQDVDADVFGFASDELEASVHAFYVRAGSIRGERNWSVERVEDIDDADLMADLLVQV 311 Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK------- 297 +S N + G+ TD+ + RQ T + Sbjct: 312 YSDAAGDNHPQSAATISTNREAIGSTQTITATDAVARAQATRERNTRQETTGRADLLAPI 371 Query: 298 -PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P P I++ E LE G V I V +G+K++++++A NA ++ + Sbjct: 372 APVPREIIVPVEPARREELEGWLTNLRGGAVTIRVASRGDKKQLMDRANENASQALQRSK 431 Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQ 411 + IS + D K L P RIE YD S+ + G V MVV + K++ Sbjct: 432 MSRISDMGARTQAMNDVAKALGLAEAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 491 Query: 412 YRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKNEENLNFHPKK--------------- 455 YR+F + D K DD + + L RRF ++ + Sbjct: 492 YRRFAIRGKDGKGAVDDLSALYETLTRRFKHGNIAGDSGESIDAEQRVASAAGKMTTAVA 551 Query: 456 -----------------------------QEYSFPSWPDV----------------VILD 470 Q + S PD+ V++D Sbjct: 552 AETIAANGNDNGEGGSDISGKGHAVPVGVQNDARESPPDIVQQNTNRHHFAYKPNLVVVD 611 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GGK Q+ AA L+ V N + + +AK + E + ++L + +Y + Sbjct: 612 GGKPQVMAAAKALEDCGV-NDVAVCGLAKRLE-----EVWVPDDDYPIILKRQSEGMYLL 665 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 QR+RDE+HRFAIT HR++R+K A S LDEI GIG ++ LL FG+VK + +S E Sbjct: 666 QRVRDESHRFAITYHRQQRRKGALRSALDEIPGIGESYQKRLLNHFGSVKAMREASVEDF 725 Query: 590 ASIEGISKKIACKIYNHFHK 609 ++GI A +Y H+ Sbjct: 726 EKVKGIGHAKAEALYTALHE 745 >gi|326440284|ref|ZP_08215018.1| excinuclease ABC subunit C [Streptomyces clavuligerus ATCC 27064] Length = 732 Score = 340 bits (873), Expect = 3e-91, Method: Composition-based stats. Identities = 134/482 (27%), Positives = 232/482 (48%), Gaps = 16/482 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 ++P+ PGVY+ D RV+YVGKA +L++R+ +Y R M++ ++ +TV Sbjct: 13 EIPDSPGVYRFRDEHRRVIYVGKAKSLRQRLANYFQDLAGMHPRTATMVTSAASVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE + IK PRFN+ RDDKS+PY+ +T + P + R + YFG Sbjct: 73 ATEVEALQLEYSWIKEYDPRFNVKYRDDKSYPYLAVTLNEEFPRVQVMRGAKRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180 P+ A+ +T++ + R F +R+C+ VF++ + RPCLL I +CS PC G ++ E++ Sbjct: 133 PYGHAWAIRETVDLMLRVFPVRTCSAGVFKNHRAKGRPCLLGYIGKCSAPCVGRVTPEEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 E E F++G ++ + M +A + +YE A RD + AL + + Sbjct: 193 RELAEEFCDFMAGRTGAYIRRLEQRMAEAAEELEYERAARLRDDITALRRALEKSAVVLA 252 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D ++ ++ A +Q G+ RG + + ++ + L+Q Y ++ Sbjct: 253 DATDADLIAVAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEAVDLSGLVEHALQQLYGEE 312 Query: 298 P---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P+ +L+ E++ + + G +V + VP++G+K+ ++E NA ++ Sbjct: 313 SGDAVPKEVLVPALPEDSGAVGEWLSGRRGAQVSLRVPRRGDKKALMETVQRNAQQALAL 372 Query: 355 KLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + S L++ + L P RIE +D SH+ G V MVV + K+ Sbjct: 373 HKTKRASDLTTRSRALEEIAEALGLDSAPLRIECFDISHLQGEDVVASMVVFEDGLPRKS 432 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 +YR+F + QDD M V+ RRF + + ++ P PD Sbjct: 433 EYRRFQIKG--FPGQDDVRSMHEVVGRRFRRYLAEKDRTGEWIGADSPDTPGGPDSAGCP 490 Query: 471 GG 472 GG Sbjct: 491 GG 492 Score = 184 bits (467), Expect = 4e-44, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 87/164 (53%), Gaps = 7/164 (4%) Query: 441 QLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500 L + F P +V++DGG Q++AA+ L +L +++ + + +AK Sbjct: 545 DLEAGLPGPGAADDGRPRRFAYPPQLVVVDGGAPQVAAARRALDELGIDD-VAVCGLAKR 603 Query: 501 PKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDE 559 + E + + + +VL LY +QR+RD AH FAI R +R + SPLD+ Sbjct: 604 LE-----EVWLPGESDPVVLPRASEGLYLLQRVRDTAHDFAIRYQRSKRTHRIRTSPLDD 658 Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 + G+G +RK+ L++ FG+VK + +++ E + + G+ +K A + Sbjct: 659 VPGLGTVRKQALIKHFGSVKRLRQATIEQICEVPGMGRKTAESV 702 >gi|294811989|ref|ZP_06770632.1| UvrABC system protein C [Streptomyces clavuligerus ATCC 27064] gi|294324588|gb|EFG06231.1| UvrABC system protein C [Streptomyces clavuligerus ATCC 27064] Length = 742 Score = 340 bits (873), Expect = 3e-91, Method: Composition-based stats. Identities = 134/482 (27%), Positives = 232/482 (48%), Gaps = 16/482 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 ++P+ PGVY+ D RV+YVGKA +L++R+ +Y R M++ ++ +TV Sbjct: 23 EIPDSPGVYRFRDEHRRVIYVGKAKSLRQRLANYFQDLAGMHPRTATMVTSAASVEWTVV 82 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE + IK PRFN+ RDDKS+PY+ +T + P + R + YFG Sbjct: 83 ATEVEALQLEYSWIKEYDPRFNVKYRDDKSYPYLAVTLNEEFPRVQVMRGAKRKGVRYFG 142 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180 P+ A+ +T++ + R F +R+C+ VF++ + RPCLL I +CS PC G ++ E++ Sbjct: 143 PYGHAWAIRETVDLMLRVFPVRTCSAGVFKNHRAKGRPCLLGYIGKCSAPCVGRVTPEEH 202 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 E E F++G ++ + M +A + +YE A RD + AL + + Sbjct: 203 RELAEEFCDFMAGRTGAYIRRLEQRMAEAAEELEYERAARLRDDITALRRALEKSAVVLA 262 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D ++ ++ A +Q G+ RG + + ++ + L+Q Y ++ Sbjct: 263 DATDADLIAVAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEAVDLSGLVEHALQQLYGEE 322 Query: 298 P---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P+ +L+ E++ + + G +V + VP++G+K+ ++E NA ++ Sbjct: 323 SGDAVPKEVLVPALPEDSGAVGEWLSGRRGAQVSLRVPRRGDKKALMETVQRNAQQALAL 382 Query: 355 KLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + S L++ + L P RIE +D SH+ G V MVV + K+ Sbjct: 383 HKTKRASDLTTRSRALEEIAEALGLDSAPLRIECFDISHLQGEDVVASMVVFEDGLPRKS 442 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 +YR+F + QDD M V+ RRF + + ++ P PD Sbjct: 443 EYRRFQIKG--FPGQDDVRSMHEVVGRRFRRYLAEKDRTGEWIGADSPDTPGGPDSAGCP 500 Query: 471 GG 472 GG Sbjct: 501 GG 502 Score = 184 bits (467), Expect = 4e-44, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 87/164 (53%), Gaps = 7/164 (4%) Query: 441 QLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500 L + F P +V++DGG Q++AA+ L +L +++ + + +AK Sbjct: 555 DLEAGLPGPGAADDGRPRRFAYPPQLVVVDGGAPQVAAARRALDELGIDD-VAVCGLAKR 613 Query: 501 PKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDE 559 + E + + + +VL LY +QR+RD AH FAI R +R + SPLD+ Sbjct: 614 LE-----EVWLPGESDPVVLPRASEGLYLLQRVRDTAHDFAIRYQRSKRTHRIRTSPLDD 668 Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 + G+G +RK+ L++ FG+VK + +++ E + + G+ +K A + Sbjct: 669 VPGLGTVRKQALIKHFGSVKRLRQATIEQICEVPGMGRKTAESV 712 >gi|309799922|ref|ZP_07694126.1| excinuclease ABC, C subunit [Streptococcus infantis SK1302] gi|308116449|gb|EFO53921.1| excinuclease ABC, C subunit [Streptococcus infantis SK1302] Length = 497 Score = 340 bits (873), Expect = 3e-91, Method: Composition-based stats. Identities = 140/513 (27%), Positives = 233/513 (45%), Gaps = 39/513 (7%) Query: 52 ISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKH 111 +S+I + F VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L Sbjct: 1 MSEIVDFEFIVTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIIT 59 Query: 112 RDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPC 171 R G YFGP+ V A + L R F R C + ++ C + I +C Sbjct: 60 RQVKKDGGLYFGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCVAHT 115 Query: 172 TGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHI 231 + + E FL G + + + + MN A ++E A +RD + A+ + Sbjct: 116 ICKKDEAYFKAMAQEVSDFLKGQDDKIIDDLKEKMNVAAQSMEFERAAEYRDLIQAIGTL 175 Query: 232 QNHNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSY 288 + + D F Y +K C+Q F G+ ++ + Sbjct: 176 RTKQRVMAKDLQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYV 235 Query: 289 FLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA 348 P IL+ ++ +E ++ + K P++GEK++++ A+ NA Sbjct: 236 GQFYQEKSHLVPNEILIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNA 288 Query: 349 H----RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGE 404 + + Q +++ + +P RIE +DNS+IMG S V MVV Sbjct: 289 RVSLEQKFDLLEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVN 347 Query: 405 NGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWP 464 K YRK+ + V DD A MR V+ RR+ ++ ++ + P Sbjct: 348 GKPSKKDYRKYKIKT--VVGPDDYASMREVIRRRYGRVQRDG--------------LTPP 391 Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524 D++++DGG+GQ++ A+ V+++ + I I + K K E F E + L+ Sbjct: 392 DLIVIDGGQGQVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELSRNS 449 Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKKAAYSPL 557 + +QR++DE HRFAIT HR+ R K SPL Sbjct: 450 QEFFLLQRIQDEVHRFAITFHRQLRSK-IPSPL 481 >gi|222099395|ref|YP_002533963.1| UvrABC system protein C [Thermotoga neapolitana DSM 4359] gi|221571785|gb|ACM22597.1| UvrABC system protein C [Thermotoga neapolitana DSM 4359] Length = 503 Score = 340 bits (873), Expect = 3e-91, Method: Composition-based stats. Identities = 150/557 (26%), Positives = 265/557 (47%), Gaps = 55/557 (9%) Query: 52 ISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKH 111 + + +++ V TE EALLLEAN+I++ +P++N+ L+D + +PYI I++ IP + Sbjct: 1 MEEADDLETIVVTTEKEALLLEANLIRKYRPKYNVRLKDTEFYPYIRISN-DDIPYVEIV 59 Query: 112 RDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPC 171 + +YFGP+ +V V + +LQR R+C + R + RPC LF +KRC GPC Sbjct: 60 KRRLKDG-TYFGPYTTVRFVRDLLETLQRILGFRTCKFDLNRVK-RPCFLFHLKRCVGPC 117 Query: 172 TGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHI 231 + +++ E + + + FLSG ++ + + R M + D+E+A +RD L LS + Sbjct: 118 --AGNVDQHEEAIEKLRDFLSGNMRDVFDYLRRKMELHSRMLDFENAAKYRDLLLNLSSV 175 Query: 232 QNHNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLR 291 + + + G G +F ++ + + R Sbjct: 176 LESQGVAFEEKINCDVVVHAQGL-FVVLRVRDGYLIGKISFEMEGGNLDDFIREYYVSGR 234 Query: 292 QFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 P ++++ + EE Y + ++ + L A ++ Sbjct: 235 G-----DVPNSLVVESDLEEMD-----------YTSLGFQYVGKPRSQLEKDLLEKARKN 278 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 +LS + LK+ K L RIE D SH+ G V +VV + K++ Sbjct: 279 LETELSMRGLKKEALKELMKLLNLKEFVYRIEGIDVSHLQGKHTVASLVVFEDGLPKKSE 338 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YR++ L +++ DD +R V+ RR+S+ P+++ +DG Sbjct: 339 YRRYRL---NLERPDDYEAIREVVRRRYSK-------------------HPLPNLLFVDG 376 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 G+GQ++AA LK L ++ +AK E+ V + + +VL P+L + Sbjct: 377 GRGQVNAALEALKDLG--KACPVVGLAKK-------EEIIVTEDKDIVLPQDHPVLRLLI 427 Query: 532 RLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 ++RDE HRFA+ HR+RR+K + S LDEI G+GP+RK+ LL+ FG+++ I +S E +A Sbjct: 428 QVRDETHRFAVNYHRRRREKESLRSVLDEIPGVGPIRKKKLLEHFGSIESIRSASVEEIA 487 Query: 591 SIEGISKKIACKIYNHF 607 + G S ++A +I Sbjct: 488 RVIG-SAEVARRILERL 503 >gi|15607074|ref|NP_214456.1| repair excision nuclease subunit C [Aquifex aeolicus VF5] gi|8134794|sp|O67887|UVRC_AQUAE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|2984329|gb|AAC07850.1| repair excision nuclease subunit C [Aquifex aeolicus VF5] Length = 566 Score = 340 bits (871), Expect = 5e-91, Method: Composition-based stats. Identities = 143/605 (23%), Positives = 257/605 (42%), Gaps = 52/605 (8%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + PE PGVY R +Y+GKA NL+KR+ ++ ++ + + +IS +N+ + VT Sbjct: 12 QNAPEKPGVYLFK-KGNRPIYIGKAKNLKKRLLQHLKASEYDSKERAIISNSDNLEWIVT 70 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 E EAL+LE ++I++ KPR+N+L + +P +L+T P + R + +G FG Sbjct: 71 RNEYEALVLEIDLIQQYKPRYNVLHKFGGGYPMLLLTKDE-YPTIKVVRGTEH-EGELFG 128 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PF K + F LR+C R+ PC+ + + CS PC G +S E+Y Sbjct: 129 PFLQSKKAYKVKKLIHNLFKLRTC--DPLPKRSEPCMDYHLGLCSAPCCGFVSKEEYELA 186 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD 243 V A+ L+G + K+ + + + + +E RD++ AL ++ Sbjct: 187 VSSARALLTGEVAEVLPKLYEKIEEFSKELMFEKCAHIRDQIIALENLAKGQAVSALPF- 245 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303 + + + K + + + + + +Y P + Sbjct: 246 ------REGDIFYKFGSRLGLLLVRSSKLVSKEIFDLESDEEVEEVILGYYYSNYVPRKV 299 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 + + L E +++ E N L I+ + Sbjct: 300 ITNF-----ELSEEVKEWIRNRAKGEVEFSGEIPKELKEVLEEN--------LGEGINEE 346 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 ++ K+F +K +P IE +D SH G VG VV K YR++ + + Sbjct: 347 VLKKEFAEKLGMPVPR-VIEGFDISHFYGEDIVGSCVVWKGGKMSKKDYRRYKVKT--IS 403 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD + VL RR +++K E PD+ ++DGGKGQL+ V Sbjct: 404 RIDDYLALEEVLTRRAKRILKGE--------------VEKPDIWLIDGGKGQLNVGIRVK 449 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 K+ ++ + + S+AK E + + G + L + +RDEAHRFA++ Sbjct: 450 KRTGLD--VKVFSLAKEE------EIIYTEDGREIRLKENPILYRVFGEIRDEAHRFALS 501 Query: 544 THRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 +RK R K+ L +I GIG +K+++ ++F T+ + E L + GI+ + + Sbjct: 502 YNRKLREKRYMEDILSKIKGIGEQKKKIIYKNFETLYDFIEAKDEELRRL-GINPSLKQE 560 Query: 603 IYNHF 607 + Sbjct: 561 VKKWL 565 >gi|150021606|ref|YP_001306960.1| excinuclease ABC subunit C [Thermosipho melanesiensis BI429] gi|149794127|gb|ABR31575.1| excinuclease ABC, C subunit [Thermosipho melanesiensis BI429] Length = 550 Score = 340 bits (871), Expect = 6e-91, Method: Composition-based stats. Identities = 154/607 (25%), Positives = 256/607 (42%), Gaps = 65/607 (10%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +PE PGVY +Y+GK+ NL+KR+ S+ + + ++ + N + + Sbjct: 7 LKNIPEKPGVYIFK-RDKEYVYIGKSKNLKKRLNSHF--SFKEEKSRLIVEESNKLETII 63 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 E E+LLLEA +I + KP++N++L++ + +PYI I+ P + R+ YF Sbjct: 64 VKNEKESLLLEATLIYKYKPKYNVMLKESEPYPYIRIS-SDVFPYVEVTRNRDKDG-KYF 121 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYM 181 GP+ +V + LQ+ R+C ++ +PCL + +K C PC + + Y Sbjct: 122 GPYTNVKFTRLFLEVLQKILNFRTCKKNI-EKIKKPCLNYYLKTCVAPCVDENKNFKMYG 180 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 E + ++ LSG ++ I M D+E+A +RD L A ++I + + Sbjct: 181 EIIKRLEEVLSGDYEYIRNFIEAKMYHHAKMLDFENAAKYRDVLLAFNNIMINQGIVLRD 240 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 K+ G + E Q + Sbjct: 241 KRNVDYIVFKDN-MFLVLKVRSGVLTSKLLYEASLTFEEFIYQFYYGMKSDLPNKIVVSK 299 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 I L+ + I V ++ + + ++E AL N ++ Sbjct: 300 QINLNFDVP------------------IIVCREEDDKYLLEIALENLTEHIKSINFSKD- 340 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 IL + L IP RIE D SH G V ++V K++YR++ L Sbjct: 341 ---ILIKMKEILNLKKIPFRIEGTDISHRNGRFTVASLIVFENGYPKKDEYRRYKLGDIL 397 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 DD +R+ + +R+++ PD+ +DGGKGQ++AA G Sbjct: 398 ----DDFESIRIFIRKRYTK-------------------HRPPDLFFVDGGKGQVNAAIG 434 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 K+N++ I ++ IAK E+ V K ++ L+ D +L + +RDE HR A Sbjct: 435 EFNKMNID--IDVVGIAK-------EEEVIVTKNKSFKLDPTDVVLRTLIFVRDETHRVA 485 Query: 542 ITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 + K + S LD I GIGP RK+ LL FGT+K I +S E L I G K IA Sbjct: 486 NSFSGKLKNNEYKVSKLDSIKGIGPKRKKQLLMKFGTLKNIKSASLEELEEIVG--KTIA 543 Query: 601 CKIYNHF 607 +I Sbjct: 544 LRIKEEL 550 >gi|149002298|ref|ZP_01827240.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP14-BS69] gi|147759613|gb|EDK66604.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP14-BS69] Length = 553 Score = 339 bits (868), Expect = 1e-90, Method: Composition-based stats. Identities = 127/478 (26%), Positives = 216/478 (45%), Gaps = 37/478 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEIYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G ++ + +++ M A ++E A +RD + A+ ++ + Sbjct: 182 SMAQEVSDFLKGQDNKIIDELKGKMAAAAQTMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P +L+ ++ +E ++ + K P++GEK++++ A+ NA + Sbjct: 302 VPNEVLIPQDIDEEAVKALVDSKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + Q +++ + +P RIE +DNS+IMG S V MVV K YRK Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472 + + V DD A MR V+ RR+ ++ + + PD++++DGG Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGG 455 >gi|83319764|ref|YP_424239.1| excinuclease ABC, C subunit [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|119367673|sp|Q2SSM4|UVRC_MYCCT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|83283650|gb|ABC01582.1| excinuclease ABC, C subunit [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 584 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 147/611 (24%), Positives = 266/611 (43%), Gaps = 35/611 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + + PG Y L+ V+YVGKA NL+KR+ +Y + + + T +I +I ++++ Sbjct: 6 QVDLLTNKPGCYLFLNKDNEVIYVGKAKNLKKRVSTYFNKA-YNIKTTRLIREITHLKYF 64 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 + E E+LLLE N+IK+ +P++N+LL DDK++PYI+IT++ P R Sbjct: 65 IVDNEKESLLLEKNLIKKYRPKYNVLLNDDKTYPYIIITNQKD-PMYKYVRKYEKKALRN 123 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GP + +LQR F LR C + +PCL + + +CSG C + S Y Sbjct: 124 YGPLPIGSNARSILLTLQRLFPLRMCKGDL----KKPCLYYHLNQCSGACFKTVDSSYYE 179 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + + KF G + +K+ + + M +A+ +E A +D++ +L I + Sbjct: 180 YQIKQVDKFFKGEINQVKQTLVKQMQKASDNLQFEQAKRIKDQITSLDFITAKQNVDIVT 239 Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 +D + N+ C F+ GQ +++ ++L+ +L+Q Y Sbjct: 240 NKNIDVVNYEINEEKICFVMLFYRLGQLTYKD-EYIQNYEGQDLDELLNSYLQQIYQKNL 298 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P+ +L+ E + L E ++ +L + S+ Sbjct: 299 YPDVLLIPNEIDLLDLDENLLEFSSYSFNNQDDIFIKLAKQNAVDSLNKSILSNNVNSGD 358 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E+ IL + + PKRIEI+D S+I G +V V+N++RK+N+ Sbjct: 359 EL---EILDQLQQISNINKYPKRIEIFDISNIYNQFITGACIVYINAKPVRNEFRKYNID 415 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 M +R ++ + E+ PD++I+DGG Q+ A Sbjct: 416 SQYTSDYARMKFMLE--KRFLKRIKEKEQ---------------LPDLIIVDGGIIQIHA 458 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A+ VL KLN+ +I +I ++K + + + + + F+ L+ Sbjct: 459 AKEVLNKLNL--KINVIGLSKDNNHKTRYLIDIFE--QTIDIKNFKKLYNFLTSLQIRVD 514 Query: 539 RFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 +A + RK+ + I G+G L + F T+ I +S + L I +KK Sbjct: 515 EYAKSGFRKKYHNQLNDQILLIKGVGKKTNLKLYKHFKTIDNIKNASFDELNKIIN-NKK 573 Query: 599 IACKIYNHFHK 609 I I ++F K Sbjct: 574 ITNLIISNFKK 584 >gi|289642290|ref|ZP_06474439.1| excinuclease ABC, C subunit [Frankia symbiont of Datisca glomerata] gi|289507925|gb|EFD28875.1| excinuclease ABC, C subunit [Frankia symbiont of Datisca glomerata] Length = 772 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 146/506 (28%), Positives = 229/506 (45%), Gaps = 48/506 (9%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +PE PGVY+ D GRV+YVGKA NL+ R+ +Y +N R HM++ +++ +TV Sbjct: 13 SVPETPGVYRFFDEHGRVVYVGKAKNLRARLSNYFTDIHNLHPRTQHMVTTASSVDWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE IK PRFN+ RDDKS+P + +T + P L R + YFG Sbjct: 73 STEVEALQLEYTWIKEFDPRFNVRYRDDKSYPSLAVTLYEQFPRLQVMRGAKRPGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P+A A+ +T++ L R F R+C+ VF+ RPCLL I RCS PC G + + ++ Sbjct: 133 PYAHAWAIRETLDLLLRVFPARTCSTGVFKQAARIGRPCLLGYIDRCSAPCVGRVDAAEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 V + F+SG ++ R M +A ++ YE A RD + AL + Sbjct: 193 RRIVEDFCDFMSGQTGRYIRRLEREMGEAAAEQRYEQAARLRDDIGALRRAMEKQAVVLP 252 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD- 296 D + ++ A +Q + G+ RG + + + T +++ FL Q Y Sbjct: 253 DGTDADVVAFAQDELEAAVQIFYVRDGRVRGQRGWVVDKIEDLTTGELVEQFLTQEYLSD 312 Query: 297 --------------------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKIT 330 P +L+ + +T ++ G +V + Sbjct: 313 STGASPASAGASAPSAGAGRVGTGVTNEIPREVLVPQLPPDTEVVADLLGIARGGRVDLR 372 Query: 331 VPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ----MILKDFTKKFALPHIPKRIEIYD 386 VP++G+KR ++E NA ++ S L + + L P RIE +D Sbjct: 373 VPRRGDKRTLMETVEHNARQAFALHRMRRASDISARSRALSELSDALGLADPPLRIESFD 432 Query: 387 NSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNE 446 S++ G V MVV + K++YR+F + V QDD A M + RRFS+ + + Sbjct: 433 ISNLQGTEVVASMVVFEDGLPRKSEYRRFAIRG--VDGQDDVASMHETITRRFSRYLAEK 490 Query: 447 ENLNFHPKKQEYSFPSWPDVVILDGG 472 + F PD+ GG Sbjct: 491 --------ARTGEFAGLPDLADPVGG 508 Score = 205 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 91/167 (54%), Gaps = 9/167 (5%) Query: 451 FHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE---NRITIISIAKGPKRSAGM 507 + F P++V++DGG Q++AA+ L L ++ + + +AK + Sbjct: 554 DPTTGRPRRFAYPPNLVVVDGGPPQVAAARRALDALGIDSGPGGVALCGLAKRLE----- 608 Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPL 566 E + + + ++L LY +QR+RDEAHRFAIT HR++R K+ S LD+I G+G Sbjct: 609 EVWLPDEEDPVILPRTSEALYLLQRIRDEAHRFAITYHRQKRSKSMVRSALDDIPGLGET 668 Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 R++ LL++FG++ I +++ E +A + GI + A I + + Sbjct: 669 RRKALLRAFGSLARIRQATVEQIAEVPGIGRHTARAIVDALAPTSPG 715 >gi|313665188|ref|YP_004047059.1| excinuclease ABC, C subunit [Mycoplasma leachii PG50] gi|312949521|gb|ADR24117.1| excinuclease ABC, C subunit [Mycoplasma leachii PG50] Length = 584 Score = 337 bits (865), Expect = 3e-90, Method: Composition-based stats. Identities = 149/607 (24%), Positives = 270/607 (44%), Gaps = 35/607 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 + PG Y L+ V+YVGKA NL+KR+ +Y + + + T +I +I ++++ + Sbjct: 10 LTNKPGCYLFLNKDNEVIYVGKAKNLKKRVSTYFNKA-YNIKTTRLIREITDLKYFIVDN 68 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E E+LLLE N+IK+ +P++N+LL DDK++PYI IT++ P R +GP Sbjct: 69 EKESLLLEKNLIKKYRPKYNVLLNDDKTYPYIAITNQKD-PMYKYVRKYEKKALRNYGPL 127 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + ++QR F L+ C + +PCL + + +CSG C + Y + Sbjct: 128 PIGSNARSILLTIQRLFPLKMCKGDL----KKPCLYYHLNQCSGACFKTVDPSYYEYQIK 183 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 + KF G + +K+ + + M +A+ +E A +D++ +L I + + Sbjct: 184 QVDKFFKGEINQVKQTLVKQMQKASDNLQFEQAKRIKDQITSLDFITTKQNVDIVTNKNI 243 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D + ++ C F+ GQ +++ ++L+ +L+Q Y P+ Sbjct: 244 DVINYEISEEKICFVMLFYRLGQLTYKD-EYIQNYEGQDLDELLNSYLQQIYQKNLYPDV 302 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 +L+ E + L E ++ +L + S+ E+ Sbjct: 303 LLIPNEIDLLDLDENLLEFSSYSFNNQDDVFIKLAKQNAIDSLNKSIISNNVNSGDEL-- 360 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 IL + + PKRIEI+D S+I G +V V+N++RK+N+ Sbjct: 361 -EILDQLQQVSNINKYPKRIEIFDISNIYNQFITGACIVYINAKPVRNEFRKYNIDSQYT 419 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 D A M+ +LE+RF + K +E L PD++I+DGG Q+ AA+ V Sbjct: 420 ---SDYARMKFMLEKRFLKRKKEKEQL--------------PDLIIVDGGIIQIHAAKEV 462 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 L KLN+ +I +I ++K + + + + + F+ L+ +A Sbjct: 463 LNKLNL--KINVIGLSKDNNHKTRYLIDIFE--QTIDIKNFKKLYNFLTSLQIRVDEYAK 518 Query: 543 TTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 + RK+ + I G+G L + F T++ I + + L I +KKI Sbjct: 519 SGFRKKYHNQLNDQILLIKGVGKKTNLKLYKHFKTIENIKNADFDELNKIIN-NKKITNL 577 Query: 603 IYNHFHK 609 I ++F K Sbjct: 578 IISNFKK 584 >gi|289547961|ref|YP_003472949.1| excinuclease ABC, C subunit [Thermocrinis albus DSM 14484] gi|289181578|gb|ADC88822.1| excinuclease ABC, C subunit [Thermocrinis albus DSM 14484] Length = 565 Score = 336 bits (862), Expect = 6e-90, Method: Composition-based stats. Identities = 136/612 (22%), Positives = 259/612 (42%), Gaps = 54/612 (8%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ PE GVY GR +Y+GKA N+++R+ + ++ R ++ Q +++ + + Sbjct: 7 LKRAPESCGVYLFQ-RKGRPIYIGKAKNIKERLLQHYRASTSDPREKAILEQADSVDWFI 65 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T E EAL LE ++I+ KP++NIL + +P +LIT + P L R + +G F Sbjct: 66 TRNEFEALTLEIDLIQTHKPKYNILHKYGAGYPMLLIT-EDPFPTLRVVRGAHH-RGKLF 123 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF + K + F LR+C R PC+ + + CSGPC G+I E Y+ Sbjct: 124 GPFFTASKAYKVKRLVHSLFKLRTCDPMPI--RKEPCMDYHLGLCSGPCCGKIDREDYLL 181 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242 V A+ LSG + + + ++Q + ++E + RD++ AL + Sbjct: 182 SVMSAESMLSGEVGEVLPLLYQRIDQLMVNMEFEKCAVIRDQIQALERLGQGQKVSPLPY 241 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 +++ G + + ++ + + Sbjct: 242 ASADVFYRMGNVV--------GIFLIRSHKLVDKQIHTLESESQLEEMLAGFYYANVLPQ 293 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 +LL L++ + + + E ++ + N + Sbjct: 294 VLLVNFPISEELIQWLQKRGACKILPL------EDPELEKLLRENVGAAVP--------- 338 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 +L++ K +P+ IE +D SH G VG VV + K +YR++ + Sbjct: 339 YQVLREEFLKTLSVPLPEVIEGFDVSHFYGEYVVGSCVVWEKGFMNKKRYRRYRIKS--F 396 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 + +D + +L RR +L + EE + PD+ ++DGG GQL+ V Sbjct: 397 EGINDYMALEEILSRRARRLKEGEEKM--------------PDIWLIDGGVGQLNVGIRV 442 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 + ++ I ++++AK E + G + L + +RDEAHRFA+ Sbjct: 443 RDRWDL--PIKVMALAKEE------ELLITEDGRKIPLKENPLLYKVFGLIRDEAHRFAL 494 Query: 543 TTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 + +R+ R K A LD++ GIG ++KR++ ++F + ++ P L + GI + Sbjct: 495 SYNRQLRLKNALTDILDKVKGIGEVKKRIIYRNFDNLYEFLQADPNYLKQL-GIDPSLKQ 553 Query: 602 KIYNHFHKNTSH 613 ++ + + Sbjct: 554 EVEKYLAGDKGS 565 >gi|331697226|ref|YP_004333465.1| UvrABC system protein C [Pseudonocardia dioxanivorans CB1190] gi|326951915|gb|AEA25612.1| UvrABC system protein C [Pseudonocardia dioxanivorans CB1190] Length = 742 Score = 332 bits (852), Expect = 9e-89, Method: Composition-based stats. Identities = 139/493 (28%), Positives = 220/493 (44%), Gaps = 28/493 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +PE PGVY+ D GRV+YVGKA +L+ R+ SY R M++ + +TV Sbjct: 13 SIPEAPGVYRFSDPRGRVIYVGKAKSLRSRLNSYFADVAGLHPRTRQMVTTAAAVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE N IK PRFN+ RDDK++P + +T + P L+ +R YFG Sbjct: 73 RTEVEALQLEYNWIKEFDPRFNVRYRDDKTYPVLAVTLNEEFPRLHVYRGPRRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P+A A+ +T++ L R F R+C+ VFR RPCLL I +CS PC G ++++++ Sbjct: 133 PYAHAWAIRETLDMLLRVFPARTCSAGVFRRHGQIGRPCLLGYIDKCSAPCVGTVTADEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 V + FL+G + ++ R M A ++E A RD + AL + Sbjct: 193 RTIVDDFCDFLAGRTDRMVRELERRMEDAAGALEFEKAARLRDDIGALRRAMEKQAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD- 296 D + + A +Q G+ RG + + + +Q++ F+ QFY + Sbjct: 253 DGTDADVVAFAEDDLEAAVQVFHVRGGRVRGQRGWVIDKVEPTDTSQLVGRFVSQFYGEQ 312 Query: 297 -----------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQAL 345 +P P IL+ E + L G +V++ VP++G+KR + E Sbjct: 313 AALAGSADDAHQPVPREILVPELPPDAEALAEWLSGLRGSRVQLRVPRRGDKRALAETVA 372 Query: 346 INAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVV 401 NA + + + L++ L P R+E D SH+ G V +VV Sbjct: 373 RNASEAFARHKLRRAGDLTARSAALQEIQDALELESAPLRMECIDVSHVQGTDVVASLVV 432 Query: 402 VGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN---EENLNFHPKKQEY 458 + K+ YR+F + D A + V+ RRF + + E ++ Sbjct: 433 FEDGLARKSDYRRFEIKGGADGG--DVAAIAEVVRRRFRRYLAETAVETAVDPGGGAANG 490 Query: 459 SFPSWPDVVILDG 471 D DG Sbjct: 491 RPAVVADGSAADG 503 Score = 191 bits (485), Expect = 3e-46, Method: Composition-based stats. Identities = 58/230 (25%), Positives = 103/230 (44%), Gaps = 17/230 (7%) Query: 391 MGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLN 450 G AV + V ++ + D D + I Sbjct: 489 NGRPAVVADGSAADGHPVGDEEPRTRNAAVDSAEPLDISATVSAPSATVRTGID------ 542 Query: 451 FHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF 510 + F P+++++DGG Q+ AA VL +L +++ + + +AK + E + Sbjct: 543 -PHTGRPRKFAYAPNLLVVDGGPPQVEAAAQVLGELGIDD-VAVCGLAKRLE-----EVW 595 Query: 511 FVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKR 569 + ++++ LY +QR+RDEAHRFAIT HR+RR K S LD + G+GP R++ Sbjct: 596 LPADPDPVIMSRTSEGLYLLQRIRDEAHRFAITYHRQRRSKGMVASELDAVPGLGPSRRQ 655 Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS---HTPT 616 LL+ FG+V+ + + + +A++ G ++ A + H PT Sbjct: 656 ALLKQFGSVRKLRAAGVDEIAAVPGFGRRTAAAVVAALHGEAPAGDAQPT 705 >gi|289811655|ref|ZP_06542284.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 442 Score = 332 bits (851), Expect = 1e-88, Method: Composition-based stats. Identities = 140/415 (33%), Positives = 220/415 (53%), Gaps = 9/415 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI +I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYT 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M +A+ +E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTEKQFVSNAG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G ++ + +G++ + ++ A NA + K Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALVTK 369 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 LS + + L LP I R+E +D SH MG V VV N V Sbjct: 370 LSQQSTITQRLTALATVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANRAVTR 423 >gi|237751708|ref|ZP_04582188.1| excinuclease ABC subunit C [Helicobacter bilis ATCC 43879] gi|229373074|gb|EEO23465.1| excinuclease ABC subunit C [Helicobacter bilis ATCC 43879] Length = 563 Score = 330 bits (847), Expect = 4e-88, Method: Composition-based stats. Identities = 157/576 (27%), Positives = 249/576 (43%), Gaps = 55/576 (9%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-----NNHTHRITHMISQIN 56 +++P PG+YQ D ++LYVGKA NL+KR+KSY ++ RI HM++QI Sbjct: 8 QLQKIPNEPGIYQYYDKDDKLLYVGKAKNLKKRVKSYFTKECSPNPKNSLRIQHMVAQIA 67 Query: 57 NIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST 116 +I + E EAL+LE + IK P++NILLRDDK++PYI I P R Sbjct: 68 HIHTIIVANEHEALILENSFIKSQNPKYNILLRDDKTYPYITINLNDCYPRFSITRRIIK 127 Query: 117 IQGS-YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEI 175 + + YFGP+ ++ + SL F + A +PCL +QI +C G C+ + Sbjct: 128 HKDTLYFGPYP--KGAKEILQSLYELFPIVQQA--SCLKGKKPCLYYQIGKCLGVCSIKD 183 Query: 176 SSEKYMEFVHEAKKFL-SGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234 S+ K + + + +++ + +M KE +E A I +D + L Sbjct: 184 SNTKAEYDSYIQQAIILMKNTSKMQKVLESSMLSFAEKELFEQAKICKDCIDVLQETTKF 243 Query: 235 NDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLR 291 D +S + A + F G+ T F+K + + L Sbjct: 244 CAVDMKKLYNADVYSFVLQGSNAILFKLFVRDGKVVSTHHQFVKPNMTNDAENPSQKELI 303 Query: 292 QFYTDKPCPENILLSEEAE------------ETSLLEISFFKQYGYKVKITVPKQGEKRK 339 + LL E T L+ + K+ P++GEK + Sbjct: 304 REELACEIYTQALLKILKEGTLCDDIILADISTESLQTLKDSIPEFANKLFAPQKGEKLR 363 Query: 340 IIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCM 399 + A NA T K + + +L++ + F+L H IE++D SH VG M Sbjct: 364 LATLARTNALHILTHKTNLYAKQEQVLQEIKELFSLDHEITSIEVFDTSHHSSSFIVGGM 423 Query: 400 VVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS 459 V + F K YR +NL +D+ + MR +L RR +N Sbjct: 424 VSYVDYDFYKPGYRHYNL-----SGKDEYSQMREMLTRRAKSFDEN-------------- 464 Query: 460 FPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVK 513 P + +LDGG Q++ A +L+ R+++++IAK + + Sbjct: 465 --PAPSLWLLDGGLAQINLALEILESSG--ARVSVLAIAKEKRDSKAYRAKGHAKDIVRS 520 Query: 514 KGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR 549 K L DP L F+Q+LRDEAHRFAIT HR ++ Sbjct: 521 KHVEFRLQANDPRLQFLQKLRDEAHRFAITFHRNKK 556 >gi|291003605|ref|ZP_06561578.1| nuclease subunit of the excinuclease ABC complex [Saccharopolyspora erythraea NRRL 2338] Length = 698 Score = 330 bits (845), Expect = 5e-88, Method: Composition-based stats. Identities = 144/489 (29%), Positives = 220/489 (44%), Gaps = 29/489 (5%) Query: 13 YQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTCTEVEALL 71 Y+ D GRV+YVGKA +L+ R+ SY + R M++ +R+TV TEVEAL Sbjct: 2 YRFHDAEGRVIYVGKAKSLRSRLSSYFADLSGLHPRTRQMVTTATGVRWTVVGTEVEALQ 61 Query: 72 LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAV 131 LE + IK PRFN+ RDDKS+P + +T P LY R YFGP+A A+ Sbjct: 62 LEYSWIKEYDPRFNVRYRDDKSYPVLAVTLHEDFPRLYVTRGPRRKGVRYFGPYAHAWAI 121 Query: 132 EKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 +T++ L R F R+C+ VF+ RPCLL I +CS PC G + ++++ V + Sbjct: 122 RETLDMLLRVFPARTCSAGVFKRHSQIGRPCLLGYIGKCSAPCVGRVDADEHRRIVEDFC 181 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCF 245 F +G L K+ R M QA+ + ++E A RD L AL + D Sbjct: 182 DFFAGRTDTLIRKLDREMRQASEELEFERAARLRDDLEALRRAMEKQAVVLGDGTDADVI 241 Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK-------- 297 + ++ A +Q G+ RG + + E+ A + FL QFY ++ Sbjct: 242 AFADDELAAAVQVFHIRGGRVRGQRGWVIDKVEETGTAALAERFLTQFYGEQAALAEQAD 301 Query: 298 ----PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 P P +L+ E E + G +V + VP++G+KR ++E NA + T Sbjct: 302 AGGTPVPREVLVPELPPECEAITEWLSGLRGGRVAVRVPQRGDKRALMETVERNAKEAFT 361 Query: 354 QKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 Q + L++ L P RIE D SH+ G V +VV + K Sbjct: 362 QYKLRRAGDLTARSAALQELQDALGLDTAPLRIECIDVSHVQGTDVVASLVVFEDGVPRK 421 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN----EENLNFHPKKQEYSFPSWPD 465 ++YR+F + D + V+ RRF++ +K +E N D Sbjct: 422 SEYRRFAVREGAEGG--DVGSIAEVVRRRFARYLKETAPPQEGGNGSAGATAAVENGSTD 479 Query: 466 VVILDGGKG 474 V +G G Sbjct: 480 TVAANGSVG 488 Score = 188 bits (476), Expect = 4e-45, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 87/163 (53%), Gaps = 7/163 (4%) Query: 443 IKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPK 502 + E + F P+++++DGG Q +AA L +L + + + +I IAK + Sbjct: 521 QEAERTGIDPETGRPRKFAYPPNLLVIDGGAPQANAAADALTELGITD-VAVIGIAKRLE 579 Query: 503 RSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP-LDEIN 561 E + + E ++L LY +QR+RD AH FAI HR++R K S LD I Sbjct: 580 -----EVWLPDEAEPVILPRTSEALYLLQRVRDAAHDFAIRYHRQKRSKRMKSSTLDSIP 634 Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 G+G R+ LL+ FG+++ + +++ E ++++ G ++ A ++ Sbjct: 635 GLGEARRTALLKHFGSLRRLRQATVEEISAVPGFGQRTAETVH 677 >gi|149918455|ref|ZP_01906945.1| excinuclease ABC, C subunit [Plesiocystis pacifica SIR-1] gi|149820755|gb|EDM80165.1| excinuclease ABC, C subunit [Plesiocystis pacifica SIR-1] Length = 715 Score = 325 bits (833), Expect = 1e-86, Method: Composition-based stats. Identities = 152/522 (29%), Positives = 246/522 (47%), Gaps = 36/522 (6%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 E++P PGVY M D GRV+YVGKA L++R++ Y + ++ + + + +I +T Sbjct: 35 ERLPADPGVYVMRDRKGRVVYVGKARRLRQRVRQYFNGHDTRRFVPTLGRILGDIEAVIT 94 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 + EA+LLE N+IKR PRFN+ LRDDK + + + P L R+ ++ + +Y+G Sbjct: 95 SNDKEAMLLENNLIKRYHPRFNVKLRDDKQYLVLRLDPDKDWPKLDVVRNIASDKANYYG 154 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ S + T+ + R F LR+C+D V R+R RPCL +QI RC PC E+ Y E Sbjct: 155 PYHSATSARHTLRVVNRHFQLRTCSDFVLRNRKRPCLQYQIGRCPAPCVYEVDEGAYAEQ 214 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--- 240 V + FLSG + L + ++ M A ++E A RD+L A+ + + Sbjct: 215 VKDVGLFLSGRHTELVKGLSARMEAAAENLEFEQAARIRDQLRAIETSLQRQEVVGTDEL 274 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-C 299 D +Y G+ G+ F + E + ++LS FL +Y + P Sbjct: 275 DQDVIGMYREGGSVEFVVMHVRAGKLIGSQRFG-ASGMELPDPEVLSSFLSAYYDEAPLV 333 Query: 300 PENILLSEEA--EETSLLEISFFKQ-------YGYKVKITVPKQGEKRKIIEQALINAHR 350 PE +LL E ++ + L ++ V I VPK+G ++++ A NA Sbjct: 334 PEELLLPFELAEDDAAPLADWLSERRGELLADRRRSVAIKVPKRGPRKRLTLLAERNAAS 393 Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + + S + L ++ L +P+RIE YD SHI G V MVV + K Sbjct: 394 NFATRRSKRDDAEQALTRLRERLRLSRLPRRIECYDVSHIQGSDPVASMVVFTDGQPDKA 453 Query: 411 QYRKFNLHPNDVKT----------QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSF 460 YR F + DD M VL RRF + + + E Sbjct: 454 AYRHFKIKGQVDDGGAGLSQGERQNDDFRSMYEVLTRRFRRALD---------RGAEDDS 504 Query: 461 PSWPDVVILDGGKGQLSAAQGVLKKLNV---ENRITIISIAK 499 + PD++++DGGKGQL ++ + + + + ++S+AK Sbjct: 505 WALPDLIVIDGGKGQLGRVIAAMQDMGIALGDEGVDLVSLAK 546 Score = 159 bits (401), Expect = 2e-36, Method: Composition-based stats. Identities = 46/109 (42%), Positives = 62/109 (56%), Gaps = 1/109 (0%) Query: 500 GPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLD 558 + F +A+ L LY + RLRDEAHRFAIT HRKRR K+A S LD Sbjct: 604 DEGKVKPERVFVPGARDAIALAHGSSELYLMTRLRDEAHRFAITHHRKRRGKRALTSTLD 663 Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I G+GP K+ LL+ FGTVK I + + LA ++G+ K+A +I+ Sbjct: 664 GIKGVGPATKKALLRHFGTVKAIRAADVDALAEVKGVGPKLAEQIHASL 712 >gi|163782187|ref|ZP_02177186.1| repair excision nuclease subunit C [Hydrogenivirga sp. 128-5-R1-1] gi|159882719|gb|EDP76224.1| repair excision nuclease subunit C [Hydrogenivirga sp. 128-5-R1-1] Length = 562 Score = 323 bits (827), Expect = 8e-86, Method: Composition-based stats. Identities = 147/602 (24%), Positives = 248/602 (41%), Gaps = 52/602 (8%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 PE PGVY + Y+GKA NL+KR++ ++ + + ++ ++ + VT E Sbjct: 11 PEKPGVYIFKGKK-KPTYIGKAKNLRKRLQQHLKLADIDPKEFAILRDSLSLEWIVTRNE 69 Query: 67 VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126 EAL+LE ++I+ KPR+N+L + +P +L+T P + R + Y GPF Sbjct: 70 FEALVLEVDLIQSHKPRYNVLHKYGGGYPMLLLT-DEPYPTVKVVRGTEHRGTLY-GPFL 127 Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186 K + + F LR+C R PC+ + + CS PCT +S E+Y V Sbjct: 128 QASKAYKVKKLIHKLFKLRTC--DPLPERKEPCMDYHLGLCSAPCTKFVSKEEYQLSVEG 185 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFS 246 K LSG + ++ + + + + +E RD++ AL +I Sbjct: 186 TKALLSGEVAEVLPRLYEKIEEFSGEMLFEKCAHVRDQIKALENISRGQSVSGLPYSSAD 245 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLS 306 L++ G+ + + + L FL +Y PENIL + Sbjct: 246 LFYRIGRRVG-LFLIRGGKLISKEIY------DLEREEELEEFLLGYYYSNFVPENILTN 298 Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366 L E G +++ A N + + ++ E Q + Sbjct: 299 FF-----LSEEVRTWIEGRTKGRVEFSSSIPTELVSLAEENVKENISLEVLEEEFRQKLG 353 Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426 PK IE +D SH G VG VV + K +YR++ + + D Sbjct: 354 IQL---------PKTIEGFDISHFYGEDIVGSCVVWEKGQMNKRRYRRYKVKS--LSGID 402 Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486 D +R VL RR + + E PD+ ++DGGKGQL+ A V Sbjct: 403 DYGALREVLTRRAMRFKEKRE--------------PIPDLWLIDGGKGQLNVAVSVRDTF 448 Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546 + + S+AK E F GE + L + +RDEAHRFA++ +R Sbjct: 449 GL--PFKVFSLAKEE------EILFGDGGELVRLREEPLLYRVFGLIRDEAHRFALSYNR 500 Query: 547 KRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 K R K+A L ++ G+G RK+++ ++F + R+ E L + G+ + ++ Sbjct: 501 KLRTKRALEDVLSKVKGVGETRKKIIYRNFDNLYEFIRADEERLRKL-GLPPSLQQEVKK 559 Query: 606 HF 607 + Sbjct: 560 YL 561 >gi|154248895|ref|YP_001409720.1| excinuclease ABC subunit C [Fervidobacterium nodosum Rt17-B1] gi|229558029|sp|A7HJI0|UVRC_FERNB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|154152831|gb|ABS60063.1| excinuclease ABC, C subunit [Fervidobacterium nodosum Rt17-B1] Length = 563 Score = 322 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 152/606 (25%), Positives = 264/606 (43%), Gaps = 56/606 (9%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 E++P GVY +Y+GKA L+KR+ S+ + + ++ + ++++ + Sbjct: 7 LEKIPNKSGVYIFK-KGEEYIYIGKAKELKKRLTSHFKA--KDGKSKLIVEEADDLQVIL 63 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 E EAL+LEANMI + KP++N +L+D + +PYI I++ IP L R+ +G ++ Sbjct: 64 LDNEKEALILEANMIYKYKPKYNAMLKDTQVYPYIRISNDE-IPYLEIVRN-RKGEGEFY 121 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF +V + L++ + R+C + + + +PC+ + + CSG C E S E Y + Sbjct: 122 GPFTNVYFTRQLFEVLRKVYKFRTCKRDITKLK-KPCMDYHLGLCSGVCINEESPEDYKK 180 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242 ++E K L G N+ I M Q D+E+A +RD L + + + Sbjct: 181 KINEVKNVLKGKFSNVISFIKLKMEQHARLLDFENAAKYRDILLNFNKVMESQGVVLPES 240 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 L G + F+ FYT Sbjct: 241 VNIDL-VVGKHKTFLVFKIRSGYLISKLVYEYDGHIVD--------FIELFYTQNTS--- 288 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 + E ++E + + + K + Q L A + ++ +++ Sbjct: 289 -----DIPEKIIVEKENKELKNIAKILGIKIAQAKDDLELQLLNKAIDNLNYEIGLILTN 343 Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 ++ILK + L +P RIE D SH+ G + V +VV K +YR++ L Sbjct: 344 KIILKQMKELLGLMKLPNRIEGIDISHLAGKNTVASLVVFENGEIKKEEYRRYKLGDIL- 402 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD +R+V+++R+++ + PD++ +DGG GQ++AA Sbjct: 403 ---DDFESIRIVVKKRYTK-------------------HNVPDLLFIDGGIGQVNAAYQS 440 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 LK++ E +I +AK E GE + L P+L + ++RDE HR A Sbjct: 441 LKEIGKERECDVIGLAKEE------ETIVTLHGE-IRLAFDHPVLRLLVKIRDETHRVAN 493 Query: 543 TTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 R KK+ S LDEI IGP RK+ LL+ + +++ I S + + I KK Sbjct: 494 EFTRNLSTKKSLRSILDEIKWIGPKRKKTLLERYTSIEEILSVSRSEIEQL--IGKKATE 551 Query: 602 KIYNHF 607 + N Sbjct: 552 SLLNEL 557 >gi|302561256|ref|ZP_07313598.1| excinuclease ABC, C subunit [Streptomyces griseoflavus Tu4000] gi|302478874|gb|EFL41967.1| excinuclease ABC, C subunit [Streptomyces griseoflavus Tu4000] Length = 518 Score = 316 bits (810), Expect = 6e-84, Method: Composition-based stats. Identities = 133/468 (28%), Positives = 219/468 (46%), Gaps = 18/468 (3%) Query: 23 LYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLK 81 +YVGKA +L++R+ +Y R M++ ++ +TV TEVEAL LE + IK Sbjct: 2 IYVGKAKSLRQRLANYFQDLAGLHPRTRSMVTTAASVEWTVVSTEVEALQLEYSWIKEYD 61 Query: 82 PRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRT 141 PRFN+ RDDKS+PY+ +T + P + R YFGP+A A+ T++ L R Sbjct: 62 PRFNVKYRDDKSYPYLAVTMNEEFPRVQVMRGHKKKGVKYFGPYAHAWAIRDTVDLLLRV 121 Query: 142 FFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNL 198 F +R+C+ VF++ RPCLL I +CS PC IS+E++ E E F++G Sbjct: 122 FPVRTCSAGVFKNAARTGRPCLLGYIGKCSAPCVDRISAEEHRELAEEFSDFMAGRTGTY 181 Query: 199 KEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRMDCFSLYHNKNLAC 255 ++ R M +A + +YE A RD + AL N + D ++ ++ A Sbjct: 182 LRRLERRMTEAAEEMEYERAARLRDDIGALKKAMEKNAVVLADATDADLIAVAEDELEAA 241 Query: 256 IQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP---CPENILLSEEAEET 312 +Q G+ RG + E T A ++ + L+Q Y ++ P +L+ + Sbjct: 242 VQIFHVRGGRVRGQRGWVTDKVEEITTAALVEHALQQLYGEETGDAVPREVLVPALPDPV 301 Query: 313 SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS----HQMILKD 368 ++ ++ G V + +P++G+K+ ++E NA ++ + S L++ Sbjct: 302 EPVQQWLTERRGSGVSLRIPQRGDKKSLMETVERNAQQALVLHKTKRASDLTTRSRALEE 361 Query: 369 FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDC 428 T L P RIE YD SH+ G V MVV + K++YR+F + QDD Sbjct: 362 ITDALDLDSAPLRIECYDISHLQGDDVVASMVVFEDGLARKSEYRRFQIKG--FAGQDDV 419 Query: 429 AMMRMVLERRFSQLIKNEENLNFHPKK--QEYSFPSWPDVVILDGGKG 474 M V+ RRF + + +E P + P P + + Sbjct: 420 RSMHEVITRRFRRYLAEKERTGEWPDGTAPTDALPEPPAATLTEAPGP 467 >gi|315282009|ref|ZP_07870516.1| excinuclease ABC subunit C [Listeria marthii FSL S4-120] gi|313614354|gb|EFR87991.1| excinuclease ABC subunit C [Listeria marthii FSL S4-120] Length = 417 Score = 316 bits (809), Expect = 9e-84, Method: Composition-based stats. Identities = 116/418 (27%), Positives = 193/418 (46%), Gaps = 20/418 (4%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY + + + ++ +I + + VT + Sbjct: 13 LPDQPGCYLMKDRQGTIIYVGKAKILKNRVRSYFSGTHDS-KTQRLVQEIVDFEYIVTSS 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 VEALLLE N+IK+ PRFNI L+DDK++P+I IT+ + P L R +G YFGP+ Sbjct: 72 NVEALLLEINLIKKHDPRFNIRLKDDKTYPFIKITN-ERHPRLIITRQVKKDKGKYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A + L R + LR C+ + CL + + +C PC ++ + KY E Sbjct: 131 PNVYAANEVKRILDRLYPLRKCSTLP----NKVCLYYHLGQCLAPCVFDVEASKYKEMQD 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 E FL+GG +K + + M A ++E A RD++ A+ N Sbjct: 187 EIVAFLNGGYKTVKNDLMKKMQDAAENMEFEKAGEFRDQINAIETTMEKQKMTMNDFVDR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q F G+ +++ + + P+ Sbjct: 247 DVFGYAIDKGWMCVQVFFIRQGKLIERDVSQFPFYNDADEDFLTFIGQFYQKANHIPPQE 306 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS----T 358 I L + + ++ + KI VP++G K+ +++ A NA + +K Sbjct: 307 IYLPNDVDSEAVQAVVP------DTKIIVPQRGNKKDLVKLAYKNAKIALNEKFMLLERN 360 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 E ++ + +P R+E +DNS+I G V MV + KN YRK+ Sbjct: 361 EERTVGAVERLGEAMGIPTPS-RVEAFDNSNIHGTDPVSAMVTFLDGKPSKNDYRKYK 417 >gi|47459380|ref|YP_016242.1| excinuclease ABC nuclease subunit C [Mycoplasma mobile 163K] gi|47458710|gb|AAT28031.1| excinuclease ABC nuclease subunit C [Mycoplasma mobile 163K] Length = 565 Score = 315 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 138/617 (22%), Positives = 238/617 (38%), Gaps = 61/617 (9%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + + PGVY + G ++YVGKA NL+ R+K Y ++++ ++ I++ Sbjct: 5 LDLDNVTTKPGVYLWKNKHGNIVYVGKAKNLRSRMKQYFSGMLNSYKTIKLVQIIDSYEV 64 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQG 119 VT +E EAL+LE N+I+ KP FNILL DDK +PYI I+ + R Sbjct: 65 IVTTSEKEALILERNLIETHKPSFNILLIDDKRYPYIKISLLKNDIEIKMVRRYKKQNNS 124 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 Y+GPF + + IN L R G ++ Sbjct: 125 FYYGPFPTGFGAKVLINLLIRETKFE----------------------KGLPVVNKNASY 162 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + E + K L N + + M + +E A + + L ++N+ Sbjct: 163 WKEQFKKVKNILGVNNKEYINDLKKQMFLSAENFQFEIANEIKSTILFLEELKNNQVVEL 222 Query: 240 NRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 D +KN + F+ +G + F L+ S+ + + F+ ++YT Sbjct: 223 KNDKNIDVIGFSEDKNYIFLNMLFYRYGALLSSEDFVLEKLSDG--KETIRKFINEYYTL 280 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P+ +++S E L + ++ + +K Sbjct: 281 NLLPDELIISLEFTHNDLNFDFEILNPKRGTYKNILDNAIMSANEKREIKILE--FERKK 338 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 I++ L++ + L + DNS+ S V ++ K Y+KFN Sbjct: 339 EITINNIEKLEELLETKNLN----HFLVIDNSNTNNFSPVSVIISYKNGLKDKKNYKKFN 394 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 L + D M+ R FS+ PD++I+DG Q+ Sbjct: 395 LET--GDRKADVEYMKEACFRYFSK-----------------KENPIPDLLIVDGALAQV 435 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 + +L L + ++ +I + K K +K E + +L F++ +++E Sbjct: 436 REVKKILASLFI--KLKVIGLVKNDKHITSHIINLKEKREEI---SDASLLIFLKSIQEE 490 Query: 537 AHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 RFA HR R K L I GIGP ++ LL++F I +S E L I + Sbjct: 491 VDRFAKFHHRSLRTKNTLEGFLLSIKGIGPKTEKKLLENFKNYSEIYNASLEDLEKI--L 548 Query: 596 SKKIACKIYNHFHKNTS 612 SK IA +Y KN + Sbjct: 549 SKSIAKTLYEKIKKNIN 565 >gi|162455679|ref|YP_001618046.1| excinuclease ABC, subunit C [Sorangium cellulosum 'So ce 56'] gi|161166261|emb|CAN97566.1| excinuclease ABC, subunit C [Sorangium cellulosum 'So ce 56'] Length = 742 Score = 313 bits (802), Expect = 6e-83, Method: Composition-based stats. Identities = 137/462 (29%), Positives = 228/462 (49%), Gaps = 10/462 (2%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHR--ITHMISQINNIRFTVTC 64 P PG Y +D AG V+YVGKA +L+ R++SY + R I + + ++ VT Sbjct: 22 PTTPGCYLFIDKAGAVVYVGKAKSLRSRVRSYFQESGSDARYFIPILRKIVADLETVVTA 81 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EA +LE ++K+ KPRFN+ LRDDK F + + + P L R + + YFGP Sbjct: 82 TEKEAAVLENELVKQHKPRFNVKLRDDKDFLCLKLDTQKAWPMLETVRRPAPDKARYFGP 141 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 + S + +T++ + + F LR+C+D+ R RPCL +QIKRC PC ++ E Y E V Sbjct: 142 YHSATSARRTLHLVNKHFQLRTCSDTEMASRRRPCLQYQIKRCLAPCVMDVDRELYTEMV 201 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NR 241 FL G + L ++ M A+ + ++E A I+RD+L A+ ++ +Y Sbjct: 202 RSVALFLEGRHDELTGELTTRMRDASRELEFERAAIYRDQLRAVEAVREAQRVVYVKDVD 261 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--TDKPC 299 D +Y L ++ G+ T +F L+ + E + ++L FL ++Y Sbjct: 262 QDVVGIYREGTLVEVEVILVRRGRVTDTLSFSLR-NMELPDDEVLGGFLNEYYGVASTTI 320 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P+ +L+ + + + G KV + VP++G + +++ A NA + +K + Sbjct: 321 PDEVLVPVLPDGAEGVAEWLGDRRGRKVALFVPQRGPRVDLLKMANENAAHAFREKQRSS 380 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + L++ ++ LP +P+RIE D SH+ G VG +V + + K +YR FN+ Sbjct: 381 DDLEARLEEIRERLRLPTLPRRIECCDISHLGGGDTVGSIVALLDGQPDKKRYRSFNVKS 440 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFP 461 V DD A M VL RRF + + E + Sbjct: 441 --VADGDDYAAMYEVLSRRFRRGKAARQASPASTADSEAAPG 480 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 76/165 (46%), Gaps = 10/165 (6%) Query: 441 QLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500 + + PD+ ++DGG+GQL A + L + + I+ +AK Sbjct: 546 RESAGSGGDVSRRAEAGGGEWDLPDLFVVDGGRGQLQVALSAARDLGLHG-LPIVGLAKE 604 Query: 501 PKRSAGM----EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH-RKR--RKKAA 553 + G + + + L L+F+ R RDEAHRFA H RKR + + Sbjct: 605 RETQTGEKLVDRVYLPGQKNGIPLRSTSSALFFLARARDEAHRFAN--HARKRLGKARRL 662 Query: 554 YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 S +++I G+G + LL+ G+++ + R++ + + G++K+ Sbjct: 663 RSEIEDIPGLGSAVRTALLRELGSMEGVRRATDAQILGVTGVTKR 707 >gi|288818512|ref|YP_003432860.1| excinuclease ABC subunit C [Hydrogenobacter thermophilus TK-6] gi|288787912|dbj|BAI69659.1| excinuclease ABC subunit C [Hydrogenobacter thermophilus TK-6] gi|308752102|gb|ADO45585.1| excinuclease ABC, C subunit [Hydrogenobacter thermophilus TK-6] Length = 561 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 145/602 (24%), Positives = 263/602 (43%), Gaps = 55/602 (9%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 PE GVY + + + +V+Y+GKA N+++R+ + + ++S+ ++ + +T E Sbjct: 11 PEKTGVYIIKNSS-KVIYIGKAKNIRERLLQHYRQKETDAKERAIMSEARHLEWIITRNE 69 Query: 67 VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126 EAL LE ++I+ KP++N+L + +P +LIT + P L R S +G FGPF Sbjct: 70 FEALTLEIDLIQLHKPKYNVLYKYGGGYPLLLIT-QDAYPTLKVVRGHS--EGMVFGPFF 126 Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186 S +K L R F LR+C R PC+ + + CS PC G IS E+Y V Sbjct: 127 STGKAKKVKRLLHRLFRLRTC--DPMPQRKEPCMDYHLGLCSAPCCGYISREEYELSVRS 184 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFS 246 A LSG ++ ++ + +++ + + +E RD++ AL ++ + Sbjct: 185 AISLLSGDVSSVLPELYKAIDRYSQELKFEKCAQIRDQIIALENLAKGQKVSNIPIHSAD 244 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLS 306 ++++ + K + Q + FY P P++++ + Sbjct: 245 IFYSMGRLLGIF-------LIRSSKLVDKEVILLEDEQQKEEVILGFYYSNPLPQHLITN 297 Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366 + + L +S + + + R++ N L L Sbjct: 298 FDLPDEVLKWLSQRGRVSFDTL-------KDRELENIIKENMGDHVDLAL---------L 341 Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426 + K+ IE +D SH G VG VV K +YR++ + VK D Sbjct: 342 EREFKEKLGVESLHIIEGFDVSHFYGEHLVGSCVVWERGYMNKRRYRRYKIKS--VKKVD 399 Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486 D A +R VLERR +L EE PD ++DGG GQL A V +++ Sbjct: 400 DYASLREVLERRAKKLKSGEE--------------VMPDAWLIDGGYGQLRVAIEVKRRM 445 Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546 ++ + + ++AK E + G+ + L + +RDEAHRFA++ R Sbjct: 446 SL--PVLVFALAKQE------EILLCEDGKEIPLKEHPILYRVFGLIRDEAHRFALSYSR 497 Query: 547 KRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 + + + LD I G+G +++R++ ++F + + + E L + GIS +I ++ Sbjct: 498 RLKIREDTTHVLDYIKGVGEVKRRIIYRNFENLYELLVADDERLKRL-GISPQIKQEVRR 556 Query: 606 HF 607 + Sbjct: 557 YL 558 >gi|257458288|ref|ZP_05623437.1| excinuclease ABC subunit C [Treponema vincentii ATCC 35580] gi|257444315|gb|EEV19409.1| excinuclease ABC subunit C [Treponema vincentii ATCC 35580] Length = 665 Score = 311 bits (796), Expect = 3e-82, Method: Composition-based stats. Identities = 138/624 (22%), Positives = 234/624 (37%), Gaps = 61/624 (9%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 P+ GVY D V+YVGKA +L+ R+ SY ++ + ++S+ I + T E Sbjct: 19 PKTSGVYLWRDEKDIVIYVGKAKSLKNRLSSYF-ASRRDIKTRILVSRARRIEYIQTDNE 77 Query: 67 VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126 EALLLE N+IK+ KPR+NI L+D K++P + IT+ + P +Y+ R YFGPF Sbjct: 78 YEALLLENNLIKKYKPRYNINLKDGKTYPVLKITN-ERYPRIYRTRRIQNDGARYFGPFP 136 Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186 +V A++ ++ ++RT+ LR C + PCL F I RCS PC +IS Y + + E Sbjct: 137 NVPAIDDFLSLVKRTYGLRQCKHL---KKREPCLYFHIGRCSAPCADKISESDYRKDIDE 193 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNRMD 243 L G ++ M A ++E A RD + A+ ++ N D D Sbjct: 194 IALLLEGDLKKPLAELTEKMKAAAAAREFEKAARIRDGMEAVRALRGQNTVEDMDPEARD 253 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303 L G+ G +T+S A++L FL +YTD Sbjct: 254 YIGWAAEGALITFTVFKMRGGKVVGR--DLYRTESLKNEAEVLPEFLIAYYTDPKQIPPH 311 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR------------- 350 + +E L E F Q G KV IT ++ E A Sbjct: 312 IFVCAGQEYELAEQWFADQLGVKVTITALPLDGQKHHHETNTAAASVPSNTAVPVAAEKT 371 Query: 351 -SHTQKLSTEISHQMILKDFTKKFALPHIPKRIE-----IYDNSHIMGCSAVGCMVVVGE 404 + +++ + A + I + + Sbjct: 372 PVYAARIADTTGTPDRAESADTTDAAAAMSPAILRRHKAALAMAQFNAREDAARRIKELG 431 Query: 405 NGFVKNQYRK---FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFP 461 + + +K + P+ ++ D + + + + + Sbjct: 432 DFPALEELQKILSLDRPPHRIEGFDIAHLHGKYTVASLISFKDGNPDKKNYRIFRLRTTD 491 Query: 462 SWPDVVILDGGKGQLSAAQGVLKKLNVENRITI-----------------------ISIA 498 D + + + + + I I + +A Sbjct: 492 GIIDDYASMREAVARRYTRLLNEAAELPDLIMIDGGIGQVNAAKAVLDALELDIPLVGLA 551 Query: 499 KGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT-THRKRRKKAAYSPL 557 E + + +VL R L +QR+RDE HRFA T +R R K+ + Sbjct: 552 -----EKNEELYRPHINKPIVLPRRSAALRVLQRVRDETHRFANTRNNRLRSKEELHLQF 606 Query: 558 DEINGIGPLRKRLLLQSFGTVKMI 581 +++ IG R LL+SF +++ + Sbjct: 607 EQLPHIGEKRAARLLRSFSSIEKL 630 >gi|153840486|ref|ZP_01993153.1| UvrABC system protein C [Vibrio parahaemolyticus AQ3810] gi|149745851|gb|EDM56981.1| UvrABC system protein C [Vibrio parahaemolyticus AQ3810] Length = 464 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 142/482 (29%), Positives = 236/482 (48%), Gaps = 30/482 (6%) Query: 140 RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHEAKKFLSGGNHNL 198 + F +R C D+V+ +RTRPCL++QI RC+GPC IS E+Y E V + FL G + + Sbjct: 1 KIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVSSIISDEEYAELVGFVRLFLQGKDQQV 60 Query: 199 KEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCF---SLYHNKNLAC 255 +++ M A+ + +E A RD++ A+ +Q + MD +AC Sbjct: 61 LKQLIEKMEVASQQLRFEDAAKFRDQIQAIRRVQEQQYVSEDSMDDMDVLGFAQENGIAC 120 Query: 256 IQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP----CPENILLSEEA-E 310 I G+ G+ + F K ++ ++ FL Q+Y P I+L++E + Sbjct: 121 IHILMIRQGKVLGSRSHFPKIPQNTSQQEVFDSFLTQYYLSHNEARTIPSRIILNQELAD 180 Query: 311 ETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFT 370 + ++ + + G KV G + + ++ + NA + T K++ +++ K Sbjct: 181 DLEPIQKALSEVAGRKVHFHTSPTGARGRYLKLSNTNALTAITTKINHKMTINQRFKALR 240 Query: 371 KKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAM 430 + + R+E +D SH MG S + VV G VK +YR++N+ + DD A Sbjct: 241 ETLGME-SIMRMECFDISHTMGESTIASCVVFNNEGPVKQEYRRYNI--TGITGGDDYAA 297 Query: 431 MRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL--NV 488 M LERR+S+ + E+ PD++ +DGGKGQL+ A ++ + + Sbjct: 298 MGQALERRYSKQLDIEK---------------IPDIIFIDGGKGQLNRAHEIIAQYWGDW 342 Query: 489 ENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKR 548 R +I IAKG R G+E GE L P L+ IQ +RDE+H AI HR + Sbjct: 343 PKRPIMIGIAKGVTRKPGLETLITVDGEEFNLPSDAPALHLIQHIRDESHNHAIAGHRAK 402 Query: 549 RKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 R K S L+ I G+GP R++ LL+ G ++ + R+S E +A + GIS +A I+ Sbjct: 403 RGKTRRTSALEGIEGVGPKRRQALLKYMGGLQELKRASVEEIAKVPGISHSLAEIIFQAL 462 Query: 608 HK 609 + Sbjct: 463 KQ 464 >gi|297184002|gb|ADI20122.1| nuclease subunit of the excinuclease complex [uncultured alpha proteobacterium EB080_L06A09] Length = 422 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 174/429 (40%), Positives = 251/429 (58%), Gaps = 14/429 (3%) Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240 + +A+KFL G + ++E +A+ M +A+ +E A RDR+ AL+ +Q+ N Sbjct: 1 MDDARKFLKGKSTKIQESMAKEMTEASKNLQFEKAASLRDRIKALTTVQSSQGINPQTVN 60 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D SL+ AC+Q F QN G F+ + S + +++ FL QFY +K P Sbjct: 61 EADIVSLHMEGEQACVQVFFIRANQNWGNRAFYPRNTSGADADEVMESFLAQFYDNKTPP 120 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + IL+S LL + + G KV+I VPK+GE+ +++ A NA S +K+S Sbjct: 121 KLILVSCSVANVDLLIDALTVKRGNKVEIIVPKRGERSELVLNAARNARESLARKMSESA 180 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 + +LK ++ F+L IP RIE+YDNSHI G AVG M+V G +G++K+ YRK+N+ Sbjct: 181 TQAKLLKGISEAFSLESIPNRIEVYDNSHIQGAFAVGAMIVSGPDGYMKSSYRKYNIRYE 240 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 D DD MM+ VLERRF LIK + N WPD++++DGG GQ+SA Sbjct: 241 DTVAGDDFGMMKEVLERRFKSLIKEDPNKKTEI---------WPDLLLIDGGAGQVSAVD 291 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 +L +L V N + + IAKG R G E+F+ K A L DP+LYFIQRLRDEAHRF Sbjct: 292 EILSELGV-NDVPFVGIAKGIDRDQGKEEFYCKGKPAFALQRNDPVLYFIQRLRDEAHRF 350 Query: 541 AITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AITTHR +R KA + LDE+ G+G RKR +L FG+ K SR+S + L ++EG+S K+ Sbjct: 351 AITTHRAKRSKAIGITTLDEVPGVGAARKRAILAHFGSAKSASRASLKDLKAVEGLSSKM 410 Query: 600 ACKIYNHFH 608 A IY+ +H Sbjct: 411 AQIIYDFYH 419 >gi|313678413|ref|YP_004056153.1| excinuclease ABC subunit C [Mycoplasma bovis PG45] gi|8134796|sp|O84898|UVRC_MYCBG RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|3435082|gb|AAC32309.1| deoxyribodipyrimidine photolyase [Mycoplasma bovis] gi|312950767|gb|ADR25362.1| excinuclease ABC, C subunit [Mycoplasma bovis PG45] Length = 571 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 148/616 (24%), Positives = 252/616 (40%), Gaps = 67/616 (10%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + + PGVY D VLYVGKA NL+KR+ Y ++++ ++S I + Sbjct: 8 LMLKNVSTSPGVYLWKDAKQNVLYVGKAKNLRKRMLQYFDGAINSYKTNKLVSLIYDFDV 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 + T EALLLE MI R P FNILL DD+ +PY+ + + R + Sbjct: 68 YICKTNKEALLLEKAMIDRYNPEFNILLLDDRKYPYLKVQLLKDSLLINLSRKVNAKDSK 127 Query: 121 ---YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 Y+GPF S + + L + +G Sbjct: 128 NTFYYGPFPSGYGAKPILKL----------------------LQHETLYENGLLIKNKDY 165 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 ++ ++ K+ LS N+N ++ M+QA +E A+ RD L L ++ Sbjct: 166 NFWINQFNKIKEILSFKNNNYINELTNKMHQAANNMQFELALFLRDGLTYLKKLKESQII 225 Query: 238 IYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 ++ D F+ ++ L F+ +G L + + L F QFY Sbjct: 226 ELSQYKNIDVFAYKTDEKLIFATVLFYRYGILINKVN--LTIPLGLSVDESLRVFFEQFY 283 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 DK P+N+++ EE L + K PK G +K+++ A++N + + + Sbjct: 284 EDKILPDNLIVQEELLNFDL-------NLSSEYKFISPKIGTNKKVLDLAILNLNDYYEK 336 Query: 355 KL----STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + + +L K LP + I ++DNS+I + VG +V K+ Sbjct: 337 EHLVIKNQLDKASNMLDSLNKYLNLPKLK-NIVVFDNSNINNINPVGVAIVYTNGIKNKS 395 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YRKFNL + ++ D ++ + + FS ++ D+VI D Sbjct: 396 LYRKFNLEALNERS-ADVEYIKQSISKFFSSNKNTKDY----------------DLVIAD 438 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GG Q++ A+ LK LN+ I +I + K + +N + ++ Sbjct: 439 GGIQQVNEAKKTLKTLNI--NIPVIGLVKNEFHKTKA--LIDLDMNEIHIN-DLELYNYL 493 Query: 531 QRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 +++ E RFA + R R+K + L I G+GP ++ LL F + I +S E L Sbjct: 494 VQIQVEVDRFAKSHFRNRQKISSLEGKLRNIKGLGPNMEQNLLNHFKSYAKIYDASVEEL 553 Query: 590 ASIEGISKKIACKIYN 605 + I + IA I N Sbjct: 554 SKI--VPLNIAKSIKN 567 >gi|269218452|ref|ZP_06162306.1| excinuclease ABC subunit C [Actinomyces sp. oral taxon 848 str. F0332] gi|269211563|gb|EEZ77903.1| excinuclease ABC subunit C [Actinomyces sp. oral taxon 848 str. F0332] Length = 734 Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats. Identities = 130/462 (28%), Positives = 202/462 (43%), Gaps = 35/462 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+ LD GRVLYVGKA NL+ R+ SY + RI M+ +++ V Sbjct: 14 IPTQPGVYRFLDGEGRVLYVGKAKNLRARLSSYFQDPAGLSDRIRAMVYTAEAVKWVVVG 73 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +EVEAL LE IK P FN++ RD+KS+PY+ ++ + P ++ R Y GP Sbjct: 74 SEVEALTLEYLWIKEFTPTFNVVFRDNKSYPYLAVSLGEEYPRVWVTRQEHRKGTRYLGP 133 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 + V A+ +T++ L F +RSC S F R RPCL I +CS PC ++ E++ Sbjct: 134 YTKVWAIRETLDQLLSVFPMRSCTKSQFNQARRLGRPCLFGHIGKCSAPCIERVTPEEHR 193 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 E +F+ GG + M +A E+YE+A RD ++AL + N + N Sbjct: 194 ETAMSLIRFMEGGGSKAIATRRKRMLEAANAEEYETAARLRDEISALEAVNERNVIVLNE 253 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-- 296 D F + ++ A +Q + G+ RG + ++I+S + Q Y D Sbjct: 254 NLDVDIFGIAFDEIEASVQVFYVRGGRIRGQQAWISDEIGGLELSEIVSNLVLQVYGDVK 313 Query: 297 ----------------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQ 334 P I + E+ L+ ++ G V++ P++ Sbjct: 314 FDEVVAVPEASRSVDDRAHTPLGAIPSEIWVPGLPEDALELQKWLAERRGGTVRLKTPRR 373 Query: 335 GEKRKIIEQALINAHRSHTQKLSTEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHI 390 G+K K+ +NA ++ + L++ L P RIE YD SH Sbjct: 374 GDKAKLAHTVRLNAEQALARHKLARAGDITVRSQALEELRDALELDRAPLRIECYDVSHT 433 Query: 391 MGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMR 432 G V MVV + K YR F + D + D Sbjct: 434 QGTHQVASMVVFEDGLAKKADYRHFIVRGPDGEGAADDTAAM 475 Score = 193 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 55/164 (33%), Positives = 87/164 (53%), Gaps = 8/164 (4%) Query: 445 NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRS 504 + F PD++++DGG Q++AAQ V+++ + + I+ +AK + Sbjct: 574 GDVPRVAGQPSAPRRFAYKPDLIVVDGGLPQVNAAQRVVEETGAD--VRIVGLAKRLE-- 629 Query: 505 AGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGI 563 E + + +VL R P L +Q+LRDE+HRFAIT HRK+R K S LD + G+ Sbjct: 630 ---EVWIPGEDFPVVLPRRSPSLRLLQQLRDESHRFAITFHRKKRAKAMTRSALDAVPGL 686 Query: 564 GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 G +++ LL S G++ I +S E L + GI +A I HF Sbjct: 687 GAAKQKALLGSLGSLAKIKAASQEELLKVPGIGPALARAIVEHF 730 >gi|294155657|ref|YP_003560041.1| excinuclease UvrABC system, nuclease subunit (UvrC) [Mycoplasma crocodyli MP145] gi|291600203|gb|ADE19699.1| excinuclease UvrABC system, nuclease subunit (UvrC) [Mycoplasma crocodyli MP145] Length = 575 Score = 297 bits (759), Expect = 5e-78, Method: Composition-based stats. Identities = 141/615 (22%), Positives = 250/615 (40%), Gaps = 67/615 (10%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +P PGVY DI V+YVGKA N++ R+ Y ++++ ++++I + +T Sbjct: 15 KNLPLSPGVYLWKDINDNVIYVGKAKNIKNRMLQYFEGRLNSYKTNDLVNKIIDFDVYLT 74 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 +E EAL+LE ++I++ P+FNILL DDK +PYI ++ +K+ + R + Sbjct: 75 KSEKEALILEKSLIEKYSPQFNILLLDDKRYPYIKVSLNNKL-IIKLDRRILKDNDNNTL 133 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGPF ++ I L+ +G + + Sbjct: 134 YFGPFPQGFGAKQIIQFLESELLYE----------------------NGLPIVKKDEYFW 171 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E ++A + LS + + +KI + +A +YE A + + + ++ + Sbjct: 172 KEKYNKAVEILSFKDKKIIQKIDQRRFEAEQLYNYELAKDYYELSKFFTLLKESQQVELD 231 Query: 241 RM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 + D + N I T ++ +G ++ +K + + L FL + Y K Sbjct: 232 QQKNIDVIDIIFENNYMHITTLYYIYGVLINKDSWSIKIYNNQED--TLLEFLERIYQKK 289 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P+ I L + K + I+ PK G K+ I++ A N QK S Sbjct: 290 NVPDEIYLHD-------AHHEIIKNNLEYLNISYPKIGAKKAILDMAHKNNLLYVNQKKS 342 Query: 358 T-EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF- 415 + ++ L I I +DNS + S G + K+ YRKF Sbjct: 343 RITQRNIKAIESLKNLLKLKEIE-NIIAFDNSTLNNESTFGVAIAYSNGLKNKSLYRKFD 401 Query: 416 -NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + + D M + R + N D++I+DG Sbjct: 402 HSKYNESIINNSDDEYMYHNVLRYYKNNKYNVN-----------------DLIIIDGAIT 444 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 QL A+ LK+L++ +I IIS+ K K + + + + F+ ++ Sbjct: 445 QLKKAKKALKELDI--KINIISLVKDDKHKTNH--ILDANFNQIKI-IDQDLYNFLASIQ 499 Query: 535 DEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 E RFA R +R + L ++ GIG ++ LL+ FGT IS +S L + Sbjct: 500 IEVDRFAKEYLRNKRITSTLEGSLAKVKGIGSKQESKLLEHFGTYAGISNASLNELKKV- 558 Query: 594 GISKKIACKIYNHFH 608 +S+K+A KI Sbjct: 559 -VSEKVAEKIVETLK 572 >gi|193216905|ref|YP_002000147.1| excinuclease ABC nuclease subunit C [Mycoplasma arthritidis 158L3-1] gi|193002228|gb|ACF07443.1| excinuclease ABC nuclease subunit C [Mycoplasma arthritidis 158L3-1] Length = 561 Score = 296 bits (757), Expect = 9e-78, Method: Composition-based stats. Identities = 136/616 (22%), Positives = 233/616 (37%), Gaps = 69/616 (11%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 + +P PGVY D G V+YVGKA NLQ R+ Y N ++++ M+ +I + Sbjct: 6 EIKNVPALPGVYLWKDKDGNVIYVGKAKNLQVRMSQYFDKNMLNSYKTPKMLEKIGSFST 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 + ++ EA +LE +I + +P +N+L SFPYI + ++ + + S Sbjct: 66 FIVTSDREAFILERKLIDQYRPFYNVLFPIRSSFPYIRVKLENNGFKIDIQNHYKKEKNS 125 Query: 121 -YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 Y+GP S + I L + G S E Sbjct: 126 IYYGPLPSNKNFKPLIRY----------------------LNHLLLAKDGLLIKNASQEY 163 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + EAKK + + + + + + +E + + L L + + + Sbjct: 164 WKTKFEEAKKIMK-FGPEFRNNLKQKIKETNEVFQFEVSSFYSSILDLLDYNKQEQQTFI 222 Query: 240 NRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 D F Y ++ + I F+ G F L ++ ++ FL +FY+ Sbjct: 223 KSQKSIDVFGFYESQEIMLIFVNFYRSGTLINQQEFALDIK--TSKENFINEFLNEFYSK 280 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P P+ ++ L + + K + K +I+ A NA +KL Sbjct: 281 NPLPDEVV---------LDDKFASFNFDVKEIMVFAKTKMYLSLIDLANKNAQNDQQRKL 331 Query: 357 ST--EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCS-AVGCMVVVGENGFVKNQYR 413 ++ L +RI ++DNS G A+G V KN YR Sbjct: 332 ENFLSQKNKAYKTHLKLGDYLEKTCRRIILFDNSFSKGTDVAIGVGVCFENGEANKNLYR 391 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 FNL ++ + D M + + DV++ DG Sbjct: 392 YFNLFIDNFRHADVEYMRQ-------------------TSLNYLKEWSEGVDVILADGDI 432 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 Q+ A + LN+ I I + K K ++G+ +V+N D + +++ R+ Sbjct: 433 AQIKAIRKSQNALNL--NIPIFGLVKNDKHETR--TLINEEGKEIVVNDLD-VFHYLSRM 487 Query: 534 RDEAHRFAI-TTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 + E RFA HRK K S L +I G+GP L++ FG+ I +S E L I Sbjct: 488 QQEVDRFAKWAYHRKNTKNMLNSKLLKIKGLGPHTLTKLIEHFGSYTKIRNASLEELEKI 547 Query: 593 EGISKKIACKIYNHFH 608 + K+IA I + Sbjct: 548 --VKKEIALAIKEQLN 561 >gi|284799954|ref|ZP_06390446.1| excinuclease ABC subunit C [Neisseria subflava NJ9703] gi|284796449|gb|EFC51796.1| excinuclease ABC subunit C [Neisseria subflava NJ9703] Length = 399 Score = 296 bits (757), Expect = 1e-77, Method: Composition-based stats. Identities = 129/414 (31%), Positives = 203/414 (49%), Gaps = 26/414 (6%) Query: 206 MNQATLKEDYESAIIHRDR------LAALSHIQNHNDSIYNRMDCFSLYHNKNLACIQTC 259 M A +E A +RD+ + + I + N + N +D +L + L C+ Sbjct: 1 MQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNPNNPNDIDLLALAVSDGLVCVHWV 60 Query: 260 FFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFYTDKPCPENILLSEEAEETSLLEI 317 G++ G +FF T ++ F+ Q Y K P+ ++ +L+ Sbjct: 61 SIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHYLGKSKPD--IIISNFPVPDVLKE 118 Query: 318 SFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPH 377 + ++G +++ GE++ ++ A NA + Q+ + S Q + + K + Sbjct: 119 ALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQRRLQQSSQQHRIDELAKILGMDS 178 Query: 378 IP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLE 436 R+E +D SH G + + VV E +QYR++N+ DD A MR VL Sbjct: 179 DSLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYRRYNITTAK--PGDDYAAMREVLT 236 Query: 437 RRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIIS 496 RR+ ++ + E N WPDVV++DGGKGQ+ A V ++L + I ++ Sbjct: 237 RRYGKMQEAEANGES---------VKWPDVVLIDGGKGQIGVAVSVWEELGLH--IPLVG 285 Query: 497 IAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-Y 554 IAKGP+R AGME+ + GE L P L+ +Q +RDE+HRFAIT HRK+R KA Sbjct: 286 IAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQTVRDESHRFAITGHRKKRDKARVT 345 Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 S L EI GIG R++ LL FG ++ + +S E L +EGISK +A IY H H Sbjct: 346 SSLSEIPGIGSKRRQALLTRFGGLRGVIAASREDLEKVEGISKALAETIYEHLH 399 >gi|148509168|gb|ABQ81806.1| excinuclease ABC subunit C [Pseudomonas alkylphenolia] Length = 343 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 112/312 (35%), Positives = 177/312 (56%), Gaps = 6/312 (1%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+M D R+LYVGKA NL+KR+ SY + ++++I + T+T E E Sbjct: 17 RPGVYRMFDGEARLLYVGKAKNLKKRLASYFRKTGLAPKTAALVARIAQVETTITANETE 76 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE +IK +P +NILLRDDKS+PY+ ++D P L HR + ++G YFGP+ S Sbjct: 77 ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDG-PFPRLGIHRGAKKLKGKYFGPYPSA 135 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 A+ ++++ LQ+TFF+R C DS + +RTRPCL +QIKRC PC G + E+Y V + Sbjct: 136 GAIRESLSLLQKTFFVRQCEDSYYSNRTRPCLQYQIKRCKAPCVGLVEPEEYAVDVRHSV 195 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246 FL G +H L ++ M QA + ++E A RD++A L +Q+ +D + Sbjct: 196 MFLEGRSHQLTNELNAEMEQAAMALEFEKAAELRDQIALLRRVQDQQSMEGGSGDVDVIA 255 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY---TDKPCPENI 303 + N AC+ G+ G+ FF + E A++++ FL Q+Y ++ P + Sbjct: 256 AFTNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVAEVMAAFLSQYYIGNAERDLPGEL 315 Query: 304 LLSEEAEETSLL 315 +++ E+ + Sbjct: 316 IVNVVHEDFAAF 327 >gi|269214909|ref|ZP_06158905.1| excinuclease ABC subunit C [Neisseria lactamica ATCC 23970] gi|269208751|gb|EEZ75206.1| excinuclease ABC subunit C [Neisseria lactamica ATCC 23970] Length = 399 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 127/414 (30%), Positives = 202/414 (48%), Gaps = 26/414 (6%) Query: 206 MNQATLKEDYESAIIHRDR------LAALSHIQNHNDSIYNRMDCFSLYHNKNLACIQTC 259 M A +E A +RD+ + + I + N + N +D +L + L C+ Sbjct: 1 MQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNPNNPNDIDLLALAVSDGLVCVHWV 60 Query: 260 FFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFYTDKPCPENILLSEEAEETSLLEI 317 G++ G +FF T ++ F+ Q Y K P+ ++ L+ Sbjct: 61 SIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHYLGKSKPD--IIISNFPVPDALKE 118 Query: 318 SFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPH 377 + ++G +++ GE++ ++ A NA + Q+ + + Q + + K + Sbjct: 119 ALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQRRLQQSNRQHRIDELAKILNMNS 178 Query: 378 IP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLE 436 R+E +D SH G + + VV E +QYR++N+ DD A MR VL Sbjct: 179 DDLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYRRYNITTAK--PGDDYAAMREVLT 236 Query: 437 RRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIIS 496 RR+ ++ + E N WPDVV++DGGKGQ+ A V ++L + I ++ Sbjct: 237 RRYGKMQEAEANGET---------VKWPDVVLIDGGKGQIGVAVSVWEELGLH--IPLVG 285 Query: 497 IAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-Y 554 IAKGP+R AGME+ + GE L P L+ +Q +RDE+HRFAIT HRK+R KA Sbjct: 286 IAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQTVRDESHRFAITGHRKKRDKARVT 345 Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 S L +I GIG R++ LL FG ++ + + E L +EGISK +A IYNH H Sbjct: 346 SSLSDIPGIGSKRRQALLTRFGGLRGVIAAGKEDLEQVEGISKALAETIYNHLH 399 >gi|302550647|ref|ZP_07302989.1| excinuclease ABC, C subunit [Streptomyces viridochromogenes DSM 40736] gi|302468265|gb|EFL31358.1| excinuclease ABC, C subunit [Streptomyces viridochromogenes DSM 40736] Length = 496 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 114/455 (25%), Positives = 201/455 (44%), Gaps = 50/455 (10%) Query: 191 LSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRMDCFSL 247 ++G + ++ + M++A +YE A RD + AL N + D ++ Sbjct: 1 MTGRTNTYIRRLEKQMSEAAEAMEYERAARLRDDIEALKKAMEKNAVVLADATDADLIAV 60 Query: 248 YHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP---CPENIL 304 ++ A +Q G+ RG + E T ++ + L+Q Y ++ P+ +L Sbjct: 61 AEDELEAAVQIFHVRGGRVRGQRGWVTDKVEEITTGALVEHALQQLYGEESGDAVPKEVL 120 Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS--- 361 + + ++ + G V + VP++G+K+ ++E NA ++ + S Sbjct: 121 VPALPDPVEPVQEWLAGRRGSGVSLRVPQRGDKKALMETVQRNAQQALVLHKTKRASDLT 180 Query: 362 -HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 L++ L P R+E YD SH+ G V MVV + K++YR+F + Sbjct: 181 TRSRALEEIADALDLDSAPLRVECYDISHLQGDDVVASMVVFEDGLARKSEYRRFQIKG- 239 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEE-------------------------------NL 449 QDD M V+ RRF + + +E N Sbjct: 240 -FAGQDDVRSMHEVITRRFRRYLAEKEKTGEWMDGEEAENGANGEHAEHAESPLAGAANT 298 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 + F P +V++DGG Q++AA+ L L +++ I + +AK + E Sbjct: 299 LTEDDGRPKKFAYPPQLVVVDGGAPQVAAARRALDDLGIDD-IAVCGLAKRLE-----EV 352 Query: 510 FFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRK 568 + + +VL LY +QR+RDEAHRFAIT R +R K SPLD++ G+G RK Sbjct: 353 WLPGDDDPVVLPRTSEGLYLLQRIRDEAHRFAITYQRTKRSKRFRSSPLDDVPGLGDTRK 412 Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 + LL+ FG++K + ++ + + + GI +K A I Sbjct: 413 QALLKHFGSLKKLRSATIDQICEVPGIGRKTAETI 447 >gi|288575939|ref|ZP_06394064.1| excinuclease ABC subunit C [Neisseria mucosa ATCC 25996] gi|288566609|gb|EFC88169.1| excinuclease ABC subunit C [Neisseria mucosa ATCC 25996] Length = 399 Score = 293 bits (751), Expect = 4e-77, Method: Composition-based stats. Identities = 127/414 (30%), Positives = 202/414 (48%), Gaps = 26/414 (6%) Query: 206 MNQATLKEDYESAIIHRDR------LAALSHIQNHNDSIYNRMDCFSLYHNKNLACIQTC 259 M A +E A +RD+ + + I + N + N +D +L + L C+ Sbjct: 1 MQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNPNNPNDIDLLALAVSDGLVCVHWV 60 Query: 260 FFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFYTDKPCPENILLSEEAEETSLLEI 317 G++ G +FF T ++ F+ Q Y K P+ ++ L+ Sbjct: 61 SIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHYLGKSKPD--IIISNFPVPDALKE 118 Query: 318 SFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPH 377 + ++G +++ GE++ ++ A NA + Q+ + S Q + + K + Sbjct: 119 ALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQRRLQQSSQQHRIDELAKILNMNS 178 Query: 378 IP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLE 436 R+E +D SH G + + VV E +QYR++N+ DD A MR VL Sbjct: 179 DDLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYRRYNITTAK--PGDDYAAMREVLT 236 Query: 437 RRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIIS 496 RR+ ++ + E N WPDVV++DGGKGQ+ A V ++L + I ++ Sbjct: 237 RRYGKMQEAEANGEA---------VKWPDVVLIDGGKGQIGVAISVWEELGLH--IPLVG 285 Query: 497 IAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-Y 554 IAKGP+R AGME+ + GE L P L+ +Q +RDE+HRFAIT HRK+R KA Sbjct: 286 IAKGPERKAGMEELILPFTGETFRLPPNSPALHLLQTVRDESHRFAITGHRKKRDKARVT 345 Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 S L +I G+G R++ LL FG ++ + +S E L +EGISK +A IY H H Sbjct: 346 SSLSDIPGVGSKRRQALLTRFGGLRGVVAASKEDLEQVEGISKALAETIYEHLH 399 >gi|291320448|ref|YP_003515712.1| UvrABC system protein C [Mycoplasma agalactiae] gi|290752783|emb|CBH40758.1| UvrABC system protein C [Mycoplasma agalactiae] Length = 571 Score = 293 bits (751), Expect = 5e-77, Method: Composition-based stats. Identities = 143/613 (23%), Positives = 239/613 (38%), Gaps = 61/613 (9%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + PGVY D VLYVGKA NL+KR+ Y ++++ + ++S + + Sbjct: 8 LKLKNTSTSPGVYLWKDAKQNVLYVGKAKNLRKRLLQYFDGAINSYKTSKLMSLVADFEV 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 + T EALLLE M+ R P FNILL DD+ +PY+ + + R ++ Sbjct: 68 YICKTNKEALLLEKAMVDRFNPEFNILLLDDRKYPYLKVQLLKDSLLITLSRKANAKDTK 127 Query: 121 ---YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 Y+GPF S + + L + +G S Sbjct: 128 NTFYYGPFPSGYGAKPILKL----------------------LQHEALYENGLLIKNKDS 165 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 ++ + K+ LS N+N + M+ A +E A+ RD L L ++ Sbjct: 166 NFWVNQFTKIKEILSFKNNNYLNDLTNKMHTAANNMQFELALFLRDGLTYLKKLKESQII 225 Query: 238 IYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 ++ D F+ ++ L F+ +G L + + + F QFY Sbjct: 226 ELSQYKNIDVFAYKTDEKLIYATVLFYRYGILINKVN--LTIPLGISIDESIRVFFEQFY 283 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 DK P+N ++ EE + L S +K K+ + H Sbjct: 284 ADKILPDNFIVQEEILKYDLNLSSDYKFISPKIGTNKKVLDLALLNLNDYYEKEHLIMQN 343 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +L S L + L I I+DNS++ + VG +V K+ YRK Sbjct: 344 QLEKADSMLSSLNKYLNLPKLK----NIVIFDNSNVNNINPVGVAIVYTNGIKNKSLYRK 399 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 FNL ++ D +R + + FS +++ D++I DGG Sbjct: 400 FNLEALSYRS-ADVDYIRQSITKFFSSDKNSKDF----------------DLIITDGGLQ 442 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY-FIQRL 533 Q++ A+ LK L + I +I + K + + D L+ ++ ++ Sbjct: 443 QVNEAKKTLKFLGL--NIPVIGLVKNEHHKTRA--LIDLNLNEIYV--NDLELHNYLAQI 496 Query: 534 RDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 + E RFA + R R+K + L I G+G ++ LL F + I +S E LA I Sbjct: 497 QIEVDRFAKSHFRNRQKISSLEGKLRNIKGLGHNMEQKLLNHFKSYAKIYDASVEELAKI 556 Query: 593 EGISKKIACKIYN 605 I+ IA I N Sbjct: 557 VPIN--IAKSIKN 567 >gi|220903857|ref|YP_002479169.1| excinuclease ABC subunit C [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868156|gb|ACL48491.1| excinuclease ABC, C subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 687 Score = 293 bits (750), Expect = 5e-77, Method: Composition-based stats. Identities = 96/316 (30%), Positives = 152/316 (48%), Gaps = 3/316 (0%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY D GR++YVGKA L++R+ SY + + M+S +I + T Sbjct: 8 SIPLSPGVYLYKDERGRIIYVGKARILRRRVLSYFRAEGLPTKTKAMLSHAGSIEYLTTT 67 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLE+++IK+ +PR+NI+LRDDK + + KH P L R + YFGP Sbjct: 68 TEKEALLLESSLIKKHRPRYNIVLRDDKQYVLFRLNPKHPFPRLEVVRQARRDGARYFGP 127 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S + +T + R F LR C+D ++R R CL + +C PC ++ ++Y E V Sbjct: 128 FTSALSARETWKLIHRAFALRRCSDRAMKNRVRACLYHFMGQCPAPCMDLVTPQQYNENV 187 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NR 241 + L G L + + M QA+ ++E A + RD++ A+ ++ Sbjct: 188 RKVCDLLQGRAAPLLDSLREAMEQASEDLEFEKAAVLRDQIRAVERTVERQAAVLPGGGD 247 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 MD LY + + F G F+ + ++L F+ Q+Y+ P Sbjct: 248 MDAVGLYQAEKGLALGIVFVRGGAVTDGRAFYWPGLTFEDAPELLWSFVSQYYSQITPPP 307 Query: 302 NILLSEEAEETSLLEI 317 ILL +T +E Sbjct: 308 RILLPWLPPDTERVED 323 Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats. Identities = 90/320 (28%), Positives = 131/320 (40%), Gaps = 34/320 (10%) Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P +L S LLE + + V+I P+ ++++ A NA + Sbjct: 388 SVPAAVLSSAPLTGRELLEQTLADRRDGAVRIVPPQHAGDNQLVDMAQSNARE--EARRQ 445 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + S IL + L P RIE D SH G MVV + + QYR +++ Sbjct: 446 EQKSEMNILDRLARALHLSGPPSRIECVDVSHTGGRQTRVGMVVFEDGQPARPQYRTYSM 505 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 + DD A + + RR S P WPD++++DGG+GQL Sbjct: 506 PD----SGDDYATLYAWVARRL------------------ESGPPWPDLLLIDGGRGQLR 543 Query: 478 AAQGVLKKLNVENRITIISIAKG------PKRSAGM---EKFFVKKGEALVLNMRDPILY 528 Q L++ + + +IAK R AG F + AL L L Sbjct: 544 TIQRALEEAGQPDLFALAAIAKARDEQGHADRRAGNVADRIFVPNRANALPLREGGQELL 603 Query: 529 FIQRLRDEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 F+Q +RD HRFAI HRK RR A L + G+GP RLL FG+V+ + ++ E Sbjct: 604 FLQNIRDTTHRFAIGRHRKARRGAALAGELMRLPGVGPATARLLWDHFGSVEAMCAATQE 663 Query: 588 TLASIEGISKKIACKIYNHF 607 L I GI A + Sbjct: 664 DLRKIPGIGPAKASMLLEKL 683 >gi|332295060|ref|YP_004436983.1| excinuclease ABC, C subunit [Thermodesulfobium narugense DSM 14796] gi|332178163|gb|AEE13852.1| excinuclease ABC, C subunit [Thermodesulfobium narugense DSM 14796] Length = 547 Score = 293 bits (750), Expect = 6e-77, Method: Composition-based stats. Identities = 143/559 (25%), Positives = 236/559 (42%), Gaps = 45/559 (8%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 ++ E +PE PGVY + LYVGKA NL R+++Y+ S +H + M+S+ + + F Sbjct: 7 LNLEDIPELPGVYMFFSKEKKPLYVGKAINLLNRLRNYLKSKSHDQKTALMLSEASYLDF 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST--IQ 118 + E EAL+LE +IK P++N+ LRD+KS+PYI I PAL R Sbjct: 67 IIVRNEYEALILEMTLIKEKVPKYNVQLRDNKSYPYIKIDFNEDFPALELFRGKPRGEKN 126 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 Y GP+ + + + LR C+ S F++ C+ +Q+K+C PC G + E Sbjct: 127 VLYIGPYPDGSNLRSLLRYINNVLPLRKCSKSTFKNAKSFCIRYQMKQCLAPCVGLANKE 186 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y + + AK +LSG +K+ + R + + + +E++E A RD L+ + + Sbjct: 187 EYKKMLMIAKDWLSGDLERVKKDLVREIERFSSEENFEQAARLRDSLSYIESFSDIKIID 246 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 + L I G + + + +FL FY++ Sbjct: 247 PQGKLNADAVYINKLGDISLVQVRHGLVSANIIKRMVNVEPANIHDAMLFFLYDFYSNIE 306 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQG--EKRKIIEQALINAHRSHTQKL 356 + + ++ +E L+E +++G K KI V + + + E+ A + + L Sbjct: 307 PGKIVFINVFLDEIDLIERFLEERWGKKRKIKVIDEEFLQGTDLSEKGKSKASAKYIEIL 366 Query: 357 STEISHQMILKDFTKKFALPHIPKRIE--------IYDNSHIMGCSAVGCMVVVGENGFV 408 + A I D +H G + V + E G Sbjct: 367 KIAKENLFAKDKINVFRAGFERLSEIFERKISLAYALDIAHFQGEATVAGLSAADERGLR 426 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 K YR+ L N + DD A + L+ F I++ D+++ Sbjct: 427 KRYYRRVRLTDN---SMDDYASIIQALKILFKSKIES-------------------DLLL 464 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 +DGG GQL AA LK ++ +IS+AK E ++ L L D L Sbjct: 465 IDGGIGQLDAALKSLK----DSSSIVISLAKEE------EIIYLPDKRILRLPKNDYALR 514 Query: 529 FIQRLRDEAHRFAITTHRK 547 + LRDEAHRFA RK Sbjct: 515 ALMYLRDEAHRFANEY-RK 532 >gi|12045058|ref|NP_072868.1| excinuclease ABC, C subunit [Mycoplasma genitalium G37] gi|2507151|sp|P47448|UVRC_MYCGE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|3844804|gb|AAC71424.1| excinuclease ABC, C subunit [Mycoplasma genitalium G37] gi|166078748|gb|ABY79366.1| excinuclease ABC, C subunit [synthetic Mycoplasma genitalium JCVI-1.0] Length = 597 Score = 293 bits (749), Expect = 7e-77, Method: Composition-based stats. Identities = 139/621 (22%), Positives = 253/621 (40%), Gaps = 41/621 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + P+ PG Y D G+VLYVGKA N+ R+ Y NN ++ + SQI+++ F Sbjct: 8 KLKTAPKKPGCYLWKDSNGKVLYVGKASNIFNRVHQYFQKNN-PYKTQLLSSQISDVDFF 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 + E +AL LEA +I + +PRFN++L+ + + Y IT K P L R Sbjct: 67 ILKDENDALNLEAKLINQYQPRFNLVLKQNNGYLYFYITKAKK-PTLELARKYQIKTTKC 125 Query: 122 FGPFASVD-AVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 FGPFAS + + + L + F LR CA + PC FQ+ C G C + EKY Sbjct: 126 FGPFASSKFKLREIHDLLLKLFPLRKCAPHQ---KNHPCFYFQMGLCMGQCMQTDTKEKY 182 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIH---RDRLAALSHIQNHNDS 237 + + ++F + + + + +A+ +++E A + + L+ + Sbjct: 183 QQVISNIEQFFNDPSVVI-NYLKAAEKKASDNQEFEKAQQFLTLQKAVLELTKTHHTTII 241 Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLR---QFY 294 F Y +N T F + + T ++ ++ S + Y Sbjct: 242 KQKSSHDFIGYVFQNNVLAITIFCYEKGELTDKEQAVFTLEQTDIVEVESAIITFIYHHY 301 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 P P I +S + L+ S PK G ++ I++ + NA + Sbjct: 302 KTTPLPSKITVSLDETNLKLISDSLKIGVFK------PKNGNEKLILQTVIDNAKHALAT 355 Query: 355 KLSTEISHQMILKDFTKKFAL--PHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 K S+ + L +EI D S VGCM+ + +K+ Sbjct: 356 KWLKFTSNYDKTQLHKDLAQLLNTDYIHSLEIIDVSFYDQNHVVGCMLRFEDGKKIKHLS 415 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472 R++N++ + A++ + +++ Q + + D++I+DGG Sbjct: 416 RRYNINSLKKGDTNHIALL------VYRRIL---------SAMQTKANLPFSDLLIIDGG 460 Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532 K Q+ + + V + II + K + + + + + P+ +++ Sbjct: 461 KAQIKSVKQVFSLFSNVKPPIIIGLVKNKNHQT--DHIMLSDFQVKKIAINSPLFHYLAT 518 Query: 533 LRDEAHRFAI-TTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 ++ E FA + K +PL +I G+G + ++L +F T+ I +S L+ Sbjct: 519 IQTEVDGFAKRSAFNKLSNHQLQNPLLQIPGVGKITAQILFDNFQTLNNIKLASVNELSQ 578 Query: 592 IEGISKKIACKIYNHFHKNTS 612 I K +A KI +F K T Sbjct: 579 F--IKKPLAQKIKTYFAKQTD 597 >gi|255065949|ref|ZP_05317804.1| excinuclease ABC subunit C [Neisseria sicca ATCC 29256] gi|255049860|gb|EET45324.1| excinuclease ABC subunit C [Neisseria sicca ATCC 29256] Length = 399 Score = 292 bits (748), Expect = 9e-77, Method: Composition-based stats. Identities = 127/414 (30%), Positives = 203/414 (49%), Gaps = 26/414 (6%) Query: 206 MNQATLKEDYESAIIHRDR------LAALSHIQNHNDSIYNRMDCFSLYHNKNLACIQTC 259 M A + +E A +RD+ + + I + N + N +D +L + L C+ Sbjct: 1 MQTAAVNLQFEEAARYRDQIQALGIMQSNQFIDSKNPNNPNDIDLLALAVSDGLVCVHWV 60 Query: 260 FFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFYTDKPCPENILLSEEAEETSLLEI 317 G++ G +FF T ++ F+ Q Y K P+ ++ L+ Sbjct: 61 SIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHYLGKSKPD--IIISNFPVPDALKE 118 Query: 318 SFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPH 377 + ++G +++ GE++ ++ A NA + Q+ + S Q + + K + Sbjct: 119 ALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQRRLQQSSQQHRIDELAKILNMNS 178 Query: 378 IP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLE 436 R+E +D SH G + + VV E +QYR++N+ DD A MR VL Sbjct: 179 DDLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYRRYNITTAK--PGDDYAAMREVLT 236 Query: 437 RRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIIS 496 RR+ ++ + E N WPDVV++DGGKGQ+ A V ++L + I ++ Sbjct: 237 RRYGKMQEAEANGEA---------VKWPDVVLIDGGKGQIGVAVSVWEELGLH--IPLVG 285 Query: 497 IAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-Y 554 IAKGP+R AGME+ + GE L P L+ +Q +RDE+HRFAIT HRK+R KA Sbjct: 286 IAKGPERKAGMEELILPFTGETFRLPHNSPALHLLQTVRDESHRFAITGHRKKRDKARVT 345 Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 S L +I G+G R++ LL FG ++ + +S E L +EGISK +A IY H H Sbjct: 346 SSLSDIPGVGSKRRQALLTRFGGLRGVVAASKEDLEQVEGISKALAETIYEHLH 399 >gi|110642025|ref|YP_669755.1| UvrC excinuclease ABC subunit C [Escherichia coli 536] gi|110343617|gb|ABG69854.1| UvrC excinuclease ABC subunit C [Escherichia coli 536] Length = 441 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 129/436 (29%), Positives = 219/436 (50%), Gaps = 29/436 (6%) Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + V + FLSG + + ++ M A+ ++E A RD++ A+ + Sbjct: 19 YAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSN 78 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD- 296 + +D + + +AC+ F G+ G+ ++F K + ++++ F+ QFY Sbjct: 79 TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQG 138 Query: 297 ---KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 + P ILL + +LL S + G K+ + +G++ + ++ A NA + T Sbjct: 139 SQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALT 198 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 KLS + + L LP + R+E +D SH MG V VV NG ++ +YR Sbjct: 199 SKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYR 257 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ + DD A M VL RR+ + I + + PDV+++DGGK Sbjct: 258 RYNI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGK 300 Query: 474 GQLSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYF 529 GQL+ A+ V +L+V +N ++ +AKG R AG+E F +GE L P L+ Sbjct: 301 GQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHV 360 Query: 530 IQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 IQ +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E Sbjct: 361 IQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE 420 Query: 589 LASIEGISKKIACKIY 604 +A + GIS+ +A KI+ Sbjct: 421 IAKVPGISQGLAEKIF 436 >gi|195953619|ref|YP_002121909.1| excinuclease ABC, C subunit [Hydrogenobaculum sp. Y04AAS1] gi|254764936|sp|B4U9X0|UVRC_HYDS0 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|195933231|gb|ACG57931.1| excinuclease ABC, C subunit [Hydrogenobaculum sp. Y04AAS1] Length = 565 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 158/605 (26%), Positives = 259/605 (42%), Gaps = 51/605 (8%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 E+ PE PGVY + +Y+GKA N++KR+ ++ + + ++ + + + VT Sbjct: 8 EKAPEEPGVYIFKNQK-HYIYIGKAINIKKRLLQHLKEREQSKKEANIFNHSKELEWIVT 66 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 E EALLLE ++I+ KP++N+LL+ +P IL+TD P + RD+S FG Sbjct: 67 RNEYEALLLEMDLIRTHKPKYNVLLKHGSGYPVILLTDDE-YPTVKITRDTSEKG-EAFG 124 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PF +++ K + TF LR+C + R PC+ + + CSGPC IS E Y Sbjct: 125 PFLNINKALKIKKLIHATFRLRTCEEMP--KRPTPCMDYHLGLCSGPCANLISKEDYAIS 182 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD 243 V AK FLSG ++ + + Q +E A RD++ L +I + ++ Sbjct: 183 VKSAKAFLSGNVKDVLPTLYEKIEQYASNLAFEKAAFLRDQVLVLQNIVDGQGVFLYDIE 242 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303 +++ + + + F + L +Y P+ I Sbjct: 243 EVDVFYLEGYS-----LWLFIIRNKRLVAHKEFRLNKELIINYEEMLGTYYMSNIVPKKI 297 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363 + + E E L I ++ + +++ N K Sbjct: 298 VANFELTENFRLFIKSKRKDVAFSNNI------PKPLLKIIEKNVVLKPDTKEFESE--- 348 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 K PK IE +D SH G VG MVV + K++YR++ + V Sbjct: 349 ------FYKLFGRKAPKLIECFDISHFQGQYTVGSMVVWEDGSLNKSKYRRYRIKT--VD 400 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD A ++ VL RR +++ E+ PD+ ++DGGKGQLS V Sbjct: 401 YIDDFASLKEVLSRRAKRIVSKEDQT--------------PDMWLIDGGKGQLSMGIEVK 446 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 +K + I I S+AK E + + G + + + LRDEAHRFAIT Sbjct: 447 EKFLL--NIYICSLAKKE------EIIYTEDGLEIPIKNHQALYRVFGLLRDEAHRFAIT 498 Query: 544 THRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 +R R K L +I G+G ++K ++ + F ++ +S E L + GISK I Sbjct: 499 YNRNLRSKEFIKDTLSKIKGVGKVKKEIIYRHFDSLYDFIKSDDEKLKKL-GISKSIKES 557 Query: 603 IYNHF 607 + Sbjct: 558 VKKIL 562 >gi|254227057|ref|ZP_04920614.1| UvrABC system protein C [Vibrio cholerae V51] gi|125620408|gb|EAZ48785.1| UvrABC system protein C [Vibrio cholerae V51] Length = 370 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 125/358 (34%), Positives = 195/358 (54%), Gaps = 10/358 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M + V+YVGKA +L+KR+ SY N + + ++S I I TV Sbjct: 11 LKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EAL+LE N IK+ P++N+LLRDDKS+PYI ++ HK P L HR + +G YF Sbjct: 71 THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGTKKRRGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GP+ AV +T++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC IS E Y Sbjct: 130 GPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDEGYQ 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 E VH + FL G ++ + + M QA+ + +E A RD++ A+ +Q + Sbjct: 190 EIVHYLRLFLQGKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDS 249 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-- 296 +D +ACI G+ G+ + F K S+++ ++ FL Q+Y Sbjct: 250 LEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHS 309 Query: 297 --KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 + P I+L+ EET L+ + + G KV V G + + ++ A NA + Sbjct: 310 EARSIPARIILNRGLTEETEALQTAISELAGRKVTFHVNPTGTRGRYLKLANTNALTA 367 >gi|121535497|ref|ZP_01667306.1| Excinuclease ABC, C subunit domain protein [Thermosinus carboxydivorans Nor1] gi|121305916|gb|EAX46849.1| Excinuclease ABC, C subunit domain protein [Thermosinus carboxydivorans Nor1] Length = 309 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 96/272 (35%), Positives = 154/272 (56%), Gaps = 6/272 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVT 63 +P+ PGVY M D R++YVGKA NL+ R++SY ++ NH+ ++ M+++I ++ + VT Sbjct: 20 HLPDKPGVYLMKDANKRIIYVGKAVNLKNRVRSYFQASRNHSPKVRAMVARIADLEYIVT 79 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E+EAL+LE N+IK+ +P++NI L+DDKS+PYI +T P +Y R YFG Sbjct: 80 ASEIEALILECNLIKKHRPKYNISLKDDKSYPYIKVTVNEAYPRVYATRKVQKDGARYFG 139 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P+ S AV +T+ L++ F LRSC R RPCL IKRC PC+G + ++Y Sbjct: 140 PYTSAGAVHETLALLRKLFPLRSCRRLDER---RPCLQHHIKRCLAPCSGRVDEDQYRSM 196 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNR 241 + FL G + ++ +++ R M +A ++E A RD+LAA+ ++ + + Sbjct: 197 IKAVCLFLEGRSDDVVKELRRRMEEAAENLEFEQAAQLRDQLAAVEKVREKQNIVTGSGD 256 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFF 273 D L + C+Q F G+ G F Sbjct: 257 QDVIGLARSAVGTCVQVFFIRSGKMVGRDHFP 288 >gi|260186360|ref|ZP_05763834.1| excinuclease ABC subunit C [Mycobacterium tuberculosis CPHL_A] Length = 427 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 109/431 (25%), Positives = 195/431 (45%), Gaps = 30/431 (6%) Query: 208 QATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR---MDCFSLYHNKNLACIQTCFFHFG 264 A + D+E A RD L+AL + D + ++ A +Q G Sbjct: 1 AAAEQLDFERAARLRDDLSALKRAMEKQAVVLGDGTDADVVAFADDELEAAVQVFHVRGG 60 Query: 265 QNRGTCTFFLKTDSE--STNAQILSYFLRQFY------------TDKPCPENILLSEEAE 310 + RG + ++ E + Q++ FL QFY + P P +L+ Sbjct: 61 RVRGQRGWIVEKPGEPGDSGIQLVEQFLTQFYGDQAALDDAADESANPVPREVLVPCLPS 120 Query: 311 ETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI----L 366 L G +V + VP++G+KR + E NA + Q S L Sbjct: 121 NAEELASWLSGLRGSRVVLRVPRRGDKRALAETVHRNAEDALQQHKLKRASDFNARSAAL 180 Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ- 425 + L P RIE D SH+ G VG +VV + K+ YR F + + + Sbjct: 181 QSIQDSLGLADAPLRIECVDVSHVQGTDVVGSLVVFEDGLPRKSDYRHFGIREAAGQGRS 240 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNF-HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484 DD A + V RRF + ++++ + + P+++ F P++ ++DGG Q++AA V+ Sbjct: 241 DDVACIAEVTRRRFLRHLRDQSDPDLLSPERKSRRFAYPPNLYVVDGGAPQVNAASAVID 300 Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544 +L V + + +I +AK + E + + + +++ LY +QR+RDEAHRFAIT Sbjct: 301 ELGVTD-VAVIGLAKRLE-----EVWVPSEPDPIIMPRNSEGLYLLQRVRDEAHRFAITY 354 Query: 545 HRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 HR +R + S LD + G+G R++ L+ FG++ + ++ + + ++ GI A + Sbjct: 355 HRSKRSTRMTASALDSVPGLGEHRRKALVTHFGSIARLKEATVDEITAVPGIGVATATAV 414 Query: 604 YNHFHKNTSHT 614 ++ ++S Sbjct: 415 HDALRPDSSGA 425 >gi|330815995|ref|YP_004359700.1| excinuclease ABC subunit C [Burkholderia gladioli BSR3] gi|327368388|gb|AEA59744.1| excinuclease ABC subunit C [Burkholderia gladioli BSR3] Length = 747 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 109/277 (39%), Positives = 158/277 (57%), Gaps = 4/277 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D G VLYVGKA NL+KR+ SY + + RI M+++I I TVT Sbjct: 37 QLPHLPGVYRYYDAGGAVLYVGKARNLKKRVSSYFNKTQLSPRIAMMVTRIRKIETTVTR 96 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H P + +R + + YFGP Sbjct: 97 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHAFPRMAYYRGAVDRKNQYFGP 155 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RC+ PC G I +E Y V Sbjct: 156 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVGAIEAEDYARDV 215 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 A +FL G + + +++ + M+ + +E A R+++++LS + + Sbjct: 216 SNASRFLLGRQNEVMKELEQKMHAFAAELKFEQAAAVRNQMSSLSTVLHQQAIEVGSESD 275 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278 D ++ + C+ G++ G +F Sbjct: 276 VDILAVVAHGGRVCVNLAMVRGGRHLGDKAYFPAHAD 312 Score = 253 bits (647), Expect = 5e-65, Method: Composition-based stats. Identities = 101/341 (29%), Positives = 165/341 (48%), Gaps = 18/341 (5%) Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 ++L F+ Q Y P +++S L+++ +Q G+KV + QG+KR + Sbjct: 411 ETEVLEAFIAQHYLGNRVPPVLVVSHAPANRELIDLLV-EQAGHKVAVLRQPQGQKRAWL 469 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHI---PKRIEIYDNSHIMGCSAVGC 398 A NA + + LS + S Q + + RIE +D SH MG + Sbjct: 470 SMAEQNARLALARLLSEQGSQQARTRALAEVLGFEAEDLAQLRIECFDISHTMGEATQAS 529 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP----- 453 VV + +YR++N+ + DD A MR VL RR+ ++++ Sbjct: 530 CVVFHHHKMQSGEYRRYNI--TGITPGDDYAAMRQVLTRRYEKMVEQAAETAAADAAAGI 587 Query: 454 ----KKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 + + P++V++DGGKGQ+ A+ V +L ++ + ++ +AKG R G+E Sbjct: 588 DGDATRASATAALLPNIVLIDGGKGQVEVARQVFTELGLDVSM-LVGVAKGEGRKVGLET 646 Query: 510 FFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567 G L L L + ++RDEAHRFAIT R +R K S L+E+ G+G R Sbjct: 647 LVFVDGRPPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 706 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LL FG ++ + +S E LAS+EGIS +A +IY H Sbjct: 707 RQRLLARFGGLRGVVAASVEELASVEGISHALAEQIYRQLH 747 >gi|238026626|ref|YP_002910857.1| excinuclease ABC subunit C [Burkholderia glumae BGR1] gi|237875820|gb|ACR28153.1| UvrABC system protein C (Protein uvrC) [Burkholderia glumae BGR1] Length = 756 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 109/273 (39%), Positives = 156/273 (57%), Gaps = 4/273 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D AG VLYVGKA NL+KR+ SY + RI M+++I I TVT Sbjct: 37 QLPHLPGVYRYYDAAGSVLYVGKARNLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 96 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H P + +R + + YFGP Sbjct: 97 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHAFPRMAYYRGAVDRKNQYFGP 155 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RCS PC G I + Y V Sbjct: 156 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIDAADYARDV 215 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 A +FL G + +++ + M+ + +E A R+++++L+ + + Sbjct: 216 ANASRFLLGRQSEVMKELEQKMHGFAAELKFEQAAAVRNQMSSLATVLHQQAIEVGSESD 275 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFL 274 D ++ + C+ G++ G +F Sbjct: 276 VDILAVVAHGGRVCVNLAMVRGGRHLGDKAYFP 308 Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats. Identities = 102/341 (29%), Positives = 167/341 (48%), Gaps = 18/341 (5%) Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 ++L F+ Q Y P +++S L+++ +Q G+KV + QG+KR + Sbjct: 420 ETEVLEAFIAQHYLGNRVPPVLVVSHALANRELIDLLV-EQAGHKVAVLRQPQGQKRAWL 478 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHI---PKRIEIYDNSHIMGCSAVGC 398 A NA + + LS + S Q + + RIE +D SH MG + Sbjct: 479 AMAEQNARLALARLLSEQGSQQARTRALAEVLGFEADDLAQLRIECFDISHTMGEATQAS 538 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEEN---------L 449 VV + +YR++N+ + DD A MR VL RR+ ++++ + Sbjct: 539 CVVFHHHKMQSGEYRRYNI--TGITPGDDYAAMRQVLMRRYEKMVEQAGEAAAADAQAGI 596 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 + + S P++V++DGGKGQ+ A+ V +L ++ + ++ +AKG R G+E Sbjct: 597 DGDATRASASAALLPNIVLIDGGKGQVEVARQVFTELGLDCSM-LVGVAKGEGRKVGLET 655 Query: 510 FFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567 G L L L + ++RDEAHRFAIT R +R K S L+E+ G+G R Sbjct: 656 LIFADGRPSLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 715 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LL FG ++ + +S E LAS+EGIS +A +IY H Sbjct: 716 RQRLLARFGGLRGVVAASVEELASVEGISHALAEQIYRQLH 756 >gi|154505837|ref|ZP_02042575.1| hypothetical protein RUMGNA_03378 [Ruminococcus gnavus ATCC 29149] gi|153793855|gb|EDN76275.1| hypothetical protein RUMGNA_03378 [Ruminococcus gnavus ATCC 29149] Length = 374 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 109/348 (31%), Positives = 181/348 (52%), Gaps = 7/348 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 +++P PGVY M D ++YVGKA +L+ R++ Y ++ N +I M++ I + Sbjct: 11 ELKKLPAKPGVYIMHDERDHIIYVGKAISLKNRVRQYFQTSRNKGVKIEQMVTHIRRFEY 70 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK P++N +L DDK++P+I +T P + R + Sbjct: 71 IVTDSELEALVLECNLIKEHHPKYNTMLMDDKTYPFIKVTVNEDFPRVMLARKMLKDKAK 130 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ S AV TI+ L + + +RSC ++ + + RPCL + IK+C PC G IS E Sbjct: 131 YFGPYTSGQAVRDTIDLLHKLYHVRSCNRNLPKDIGKERPCLNYHIKQCDAPCQGYISKE 190 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235 +Y + + E +FL+G + + + M +A+ + +E AI +R+ L ++ I Sbjct: 191 EYGKAISEVIRFLNGNFDGILKDLEEKMQKASEELKFEKAIEYRELLGSVKKIAQKQKIT 250 Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 DS D + + A +Q F G+ G F+L+ T +IL F++Q+Y Sbjct: 251 DSSGEDRDILAAAIQEEDAVVQVFFIRGGRLIGRDHFYLRISKGETCGEILDSFIKQYYA 310 Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIE 342 P P ++L EE E+ SLLE + G K K+ ++ Sbjct: 311 GTPFIPGELMLQEEIEDASLLEEWLSVKRGGKSISACRKKARRKSWWN 358 >gi|330942152|gb|EGH44804.1| excinuclease ABC subunit C [Pseudomonas syringae pv. pisi str. 1704B] Length = 379 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 123/386 (31%), Positives = 194/386 (50%), Gaps = 22/386 (5%) Query: 230 HIQNHNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYF 289 Q D +D + + N AC+ G+ G+ FF + E +++S F Sbjct: 11 QDQQSMDGGTGDVDVVAAFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAF 70 Query: 290 LRQFYT---DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 L Q++ D+ P ++++ ++ + + G ++ I+ +G + + + A+ Sbjct: 71 LAQYFLGGIDRELPGEVIVNVINDDFPAFVDAVEELRGVEMVISHRVRGTRARWQQMAVT 130 Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406 NA ++ T +L+ + K L P R+E YD SH G + V VV G G Sbjct: 131 NAEQALTARLANRQHVASRFEALAKVLGLEDPPMRLECYDISHSSGEATVASCVVFGPEG 190 Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466 +K+ YR+FN+ V DD A M L RR+S++ E L PDV Sbjct: 191 PIKSDYRRFNIEG--VTAGDDYAAMHQALTRRYSRIKAGEGKL--------------PDV 234 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDP 525 +++DGGKGQ+S A+ VL +L V + I ++ +AKG R AG E ++ L P Sbjct: 235 LLVDGGKGQMSMARDVLNELQVPDLI-LLGVAKGTTRKAGFETLYLNDSAHEFTLPGDSP 293 Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRS 584 L+ IQ++RDEAHRFAIT HR RR K S L+ + G+GP R+R LL+ FG ++ +SR+ Sbjct: 294 ALHLIQQIRDEAHRFAITGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRA 353 Query: 585 SPETLASIEGISKKIACKIYNHFHKN 610 S + +A GISKK+A IY + H Sbjct: 354 SIDEIAKAPGISKKLAESIYANLHSE 379 >gi|293363261|ref|ZP_06610145.1| excinuclease ABC, C subunit [Mycoplasma alligatoris A21JP2] gi|292553120|gb|EFF41869.1| excinuclease ABC, C subunit [Mycoplasma alligatoris A21JP2] Length = 575 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 138/616 (22%), Positives = 238/616 (38%), Gaps = 67/616 (10%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +P PGVY D ++YVGKA L+ R+ Y ++H+ ++ QIN+ +T Sbjct: 15 KSLPSEPGVYLWKDKNDAIIYVGKAKKLKNRMLQYFEGRLNSHKTNDLVKQINDFDIYIT 74 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI---QGS 120 +E EAL+LE +I++ P +NI L DDK +PYI I+ K+ ++ R S Sbjct: 75 KSEKEALILEKRLIEKYSPIYNIQLLDDKRYPYIKISLAKKL-SIKLDRKLIKDTENNTS 133 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGPF ++ L+ +G + ++ + Sbjct: 134 YFGPFPHGFGAKQISQFLESELLYE----------------------NGLLIDKKDNDFW 171 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 +A + LS + + +KI + A +YE A + + ++ Sbjct: 172 FNQYQKAIEILSFKDKKIIDKINQKRLAAEDLLNYEQARDYLELSKYFLKLKETQQIELE 231 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 +D N I ++ +G ++ K S +A +S FL Y K Sbjct: 232 KEKNIDVIDFIQKDNYLHITVLYYIYGVLINKDSWTFKIHSNVEDA--ISEFLNFLYNKK 289 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P+ ILL++ + + K I PK G K+ I+E A N QK S Sbjct: 290 ALPDQILLTDNLLTSEFISEFQNK-------IFFPKIGAKKAILEIAHKNNLVYIEQKKS 342 Query: 358 T-EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF- 415 + + + + + I +DNS + + +G + K+ Y+KF Sbjct: 343 KLNLRNIEAITQLAALLNIE-KIQNIIAFDNSSMNNDAKLGVAIAYSNGQKNKSLYKKFD 401 Query: 416 -NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 + + + D M + R F + + D+VI+DG Sbjct: 402 HSKYKEQLLFNSDDEFMYQNVLRYFKN-----------------NSFNVNDLVIIDGAIS 444 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 QL A L +LN+ +I IIS+ K K + + + +D + F+ ++ Sbjct: 445 QLKKAIKALNELNI--KINIISLVKDDKHKTSH--ILNSNFKKIEIVNKD-LYNFLASVQ 499 Query: 535 DEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 E RFA R +R + + + +I GIG + LL F T I ++ E L + Sbjct: 500 IEVDRFAKEYLRNKRITSTFEGSIAKIPGIGSKYETKLLNHFKTYSGILNATHEQLCKV- 558 Query: 594 GISKKIACKIYNHFHK 609 + K I KI Sbjct: 559 -VPKNICEKIMKTLKN 573 >gi|209517213|ref|ZP_03266058.1| excinuclease ABC, C subunit [Burkholderia sp. H160] gi|209502349|gb|EEA02360.1| excinuclease ABC, C subunit [Burkholderia sp. H160] Length = 731 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 110/277 (39%), Positives = 156/277 (56%), Gaps = 4/277 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D +G VLYVGKA +L+KR+ SY + RI M+++I I TVT Sbjct: 21 QLPHLPGVYRYYDTSGTVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 80 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T HK P + +R S + YFGP Sbjct: 81 SEAEALLLENNLIKALTPRYNILFRDDKSYPYLKLT-GHKFPRMAYYRGSVDRKNQYFGP 139 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RC+ PC IS E Y V Sbjct: 140 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVANISEEDYARDV 199 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 A +FL G + +++ + M+ + +E A R+++++LS + + Sbjct: 200 ANASRFLLGRQGEVMKELEQKMHAFASELKFEQAAAVRNQMSSLSTVLHQQAIEVGSDSD 259 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278 D ++ C+ G++ G +F Sbjct: 260 VDILAVVALGGRVCVNLAMVRGGRHLGDKAYFPTHVE 296 Score = 248 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 101/350 (28%), Positives = 166/350 (47%), Gaps = 28/350 (8%) Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 A++L F+ Q Y P +++S + +Q G+KV + QG++R + Sbjct: 387 EAEVLEAFIAQHYLGNRVPPVLVVSHAPARELV--DVLTEQAGHKVTVLRQPQGQRRAWL 444 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHI---PKRIEIYDNSHIMGCSAVGC 398 A NA + + LS + S Q + T + R+E +D SH MG + Sbjct: 445 TMAEQNARLALARLLSEQGSQQARTRALTDTLGMECDDLAHLRVECFDISHTMGEATQAS 504 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE----------- 447 VV + ++YR++N+ + DD A MR VL RR+ +++ Sbjct: 505 CVVYHHHKMQSSEYRRYNI--TGITPGDDYAAMRQVLTRRYEKMVAQAAANASDEAAASQ 562 Query: 448 -------NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500 +L + + P +V++DGGKGQ+ A+ V +L ++ + ++ +AKG Sbjct: 563 SDAAADPSLAADAAEPAAAGGVLPTIVLIDGGKGQVEIARQVFTELGLDTGM-LVGVAKG 621 Query: 501 PKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLD 558 R G+E G L L L + ++RDEAHRFAIT R +R K S L+ Sbjct: 622 EGRKVGLETLIFADGRTPLELGKESAALMLVAQIRDEAHRFAITGMRAKRGKTRQTSRLE 681 Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 E+ G+G R++ LL FG ++ + +S E LAS+EGIS+ +A +IY H Sbjct: 682 ELEGVGAKRRQRLLARFGGLRGVVAASVEDLASVEGISQALAEQIYRQLH 731 >gi|148377764|ref|YP_001256640.1| UvrABC system protein C [Mycoplasma agalactiae PG2] gi|8134797|sp|O84899|UVRC_MYCAP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|3435084|gb|AAC32310.1| deoxyribodipyrimidine photolyase [Mycoplasma agalactiae PG2] gi|148291810|emb|CAL59200.1| UvrABC system protein C [Mycoplasma agalactiae PG2] Length = 571 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 145/613 (23%), Positives = 238/613 (38%), Gaps = 61/613 (9%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + PGVY D VLYVGKA NL+KR+ Y ++++ + ++S + + Sbjct: 8 LKLKNTSTSPGVYLWKDAKQNVLYVGKAKNLRKRLLQYFDGAINSYKTSKLMSLVADFEV 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 + T EALLLE M+ R P FNILL DD+ +PY+ + + R +T Sbjct: 68 YICKTNKEALLLEKAMVDRFNPEFNILLLDDRKYPYLKVQLLKDSLLITLSRKVNTKYTK 127 Query: 121 ---YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 Y+GPF S + + LQ S G S Sbjct: 128 NTLYYGPFPSGYGAKPILKLLQHEALYES----------------------GLLIKNNDS 165 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 ++ + K+ LS N+N ++ M+ A +E A+ RD L L ++ Sbjct: 166 SFWVNQFAKIKEILSFKNNNYLNELTNKMHTAANNMQFELALFLRDGLTYLKKLKESQII 225 Query: 238 IYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 ++ D F+ ++ L F+ +G L + + + F QFY Sbjct: 226 ELSQYKNIDVFAYKTDEKLIYATVLFYRYGVLINKVN--LTIPLGISIDESIRVFFEQFY 283 Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 DK P+N ++ EE + L S +K K+ + H Sbjct: 284 ADKILPDNFIVQEEILKYDLNLSSDYKFISPKIGTNKKVLDLALLNLNDYYEKEHLIMQN 343 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 +L S L + L I I+DNS+I + VG +V K+ YRK Sbjct: 344 QLEKADSMLSSLNKYLNLPKLK----NIVIFDNSNINNINPVGVAIVYTNGIKNKSLYRK 399 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 FNL ++ D +R + + FS ++ D++I DGG Sbjct: 400 FNLEALSYRS-ADVDYIRQSITKFFSSDKNTKDF----------------DLIITDGGLQ 442 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY-FIQRL 533 Q++ A+ LK L + I +I + K + + D L+ ++ ++ Sbjct: 443 QVNEAKKTLKVLGI--NIPVIGLVKNEYHKTRA--LIDLNLNEIYV--NDLELHNYLAQI 496 Query: 534 RDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592 + E RFA + R R+K + L I G+G ++ LL F + I +S E LA I Sbjct: 497 QIEVDRFAKSHFRNRQKISSLEGKLRNIKGLGHNMEQKLLNHFKSYAKIYDASVEELAKI 556 Query: 593 EGISKKIACKIYN 605 + +A I N Sbjct: 557 --VPFNVAKSIKN 567 >gi|238788411|ref|ZP_04632205.1| UvrABC system protein C [Yersinia frederiksenii ATCC 33641] gi|238723657|gb|EEQ15303.1| UvrABC system protein C [Yersinia frederiksenii ATCC 33641] Length = 432 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 132/440 (30%), Positives = 221/440 (50%), Gaps = 29/440 (6%) Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y V + FLSG + + ++ M +A+ +E A RD++ A+ + Sbjct: 10 YQRQVDYVRLFLSGKDQQVLTQLISRMEEASQLLHFEDAARIRDQIQAVRRVTEQQFVSG 69 Query: 240 NRMD--CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294 + D + + LAC+ F G+ G+ ++F K + + ++++ F+ QFY Sbjct: 70 DSEDLDVIGVAFDAGLACVHVLFIRQGKVLGSRSYFPKVPAGTELSEVVQTFVGQFYLQG 129 Query: 295 -TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 + P ILL E LL S + G K++I +G++ + ++ A NA + Sbjct: 130 SQGRTLPGEILLDFTLAEKDLLAASLSELAGRKIQIQSRPRGDRARYLKLARTNASTALV 189 Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 +LS + + +K+ K L R+E +D SH MG V VV NG V+++YR Sbjct: 190 TRLSQQSTIHERMKELAKILNLD-EINRMECFDISHTMGEQTVASCVVFDANGPVRSEYR 248 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N+ + + DD A M VL+RR+ + + +++ PDV+ +DGGK Sbjct: 249 RYNI--SGITPGDDYAAMSQVLKRRYGKALDDKK---------------IPDVIFIDGGK 291 Query: 474 GQLSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYF 529 GQLS A V LNV + + ++ +AKG R AG+E F+ +GE L P L+ Sbjct: 292 GQLSQAFDVFASLNVPWDKQKPLLVGVAKGSDRKAGLETLFLAAEGEGFSLPPDSPALHL 351 Query: 530 IQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 IQ +RD++H AIT HR+RR K S L+ I G+GP R+++LL+ G ++ + +S E Sbjct: 352 IQHIRDDSHHHAITGHRQRRSKVKNTSALEMIEGVGPKRRQILLKYMGGLQPLLNASVEE 411 Query: 589 LASIEGISKKIACKIYNHFH 608 +A + IS+ +A KIYN Sbjct: 412 IAKVPSISQALAEKIYNALK 431 >gi|170695432|ref|ZP_02886577.1| excinuclease ABC, C subunit [Burkholderia graminis C4D1M] gi|170139623|gb|EDT07806.1| excinuclease ABC, C subunit [Burkholderia graminis C4D1M] Length = 769 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 110/277 (39%), Positives = 156/277 (56%), Gaps = 4/277 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D G VLYVGKA +L+KR+ SY + RI M+++I I TVT Sbjct: 18 QLPHLPGVYRYYDTHGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 77 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T HK P + +R S + YFGP Sbjct: 78 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHKFPRMAYYRGSVDRKNQYFGP 136 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RC+ PC G I+ E Y V Sbjct: 137 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVGNINEEDYARDV 196 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 A +FL G + +++ + M+ + +E A R+++++LS + + Sbjct: 197 ANASRFLLGRQGEVMKELEQKMHAFASELKFEQAAAVRNQMSSLSTVLHQQAIEVGSDSD 256 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278 D ++ C+ G++ G +F Sbjct: 257 VDILAVVALGGRVCVNLAMVRGGRHLGDKAYFPAHVE 293 Score = 256 bits (653), Expect = 9e-66, Method: Composition-based stats. Identities = 102/350 (29%), Positives = 167/350 (47%), Gaps = 27/350 (7%) Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 +++L F+ Q Y P +++S L+ +Q G+KV + QG++R + Sbjct: 424 ESEVLEAFIAQHYLGNRVPPVLVVSHAPATRELV-DVLIEQAGHKVTVLRQPQGQRRAWL 482 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHI---PKRIEIYDNSHIMGCSAVGC 398 A NA + + LS + S Q + + RIE +D SH MG + Sbjct: 483 AMAEQNARLALARLLSEQGSQQARTRALIDTLGMECDDLAHVRIECFDISHTMGEATQAS 542 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIK-------------- 444 VV + ++YR++N+ + DD A MR VL RR+ ++++ Sbjct: 543 CVVYHHHKMQSSEYRRYNI--TGITPGDDYAAMRQVLTRRYEKMVEQAAANAVDEATDLQ 600 Query: 445 ----NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500 + L + S P +V++DGGKGQ+ A+ V +L ++ + ++ +AKG Sbjct: 601 SDAADNPPLTQQAGEPVASGGILPSIVLIDGGKGQVEIARQVFAELGLDTGM-LVGVAKG 659 Query: 501 PKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLD 558 R G+E G L L L + ++RDEAHRFAIT R +R K S L+ Sbjct: 660 EGRKVGLETLIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRGKTRQTSRLE 719 Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 E+ G+G R++ LL FG ++ + +S E LAS+EGIS+ +A +IY H Sbjct: 720 ELEGVGAKRRQRLLARFGGLRGVVAASVEDLASVEGISQALAEQIYRQLH 769 >gi|323526849|ref|YP_004229002.1| excinuclease ABC subunit C [Burkholderia sp. CCGE1001] gi|323383851|gb|ADX55942.1| excinuclease ABC, C subunit [Burkholderia sp. CCGE1001] Length = 740 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 110/277 (39%), Positives = 155/277 (55%), Gaps = 4/277 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D G VLYVGKA +L+KR+ SY + RI M+++I I TVT Sbjct: 18 QLPHLPGVYRYYDTHGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 77 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T HK P + +R S + YFGP Sbjct: 78 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHKFPRMAYYRGSVDRKNQYFGP 136 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RC+ PC IS E Y V Sbjct: 137 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVANISEEDYARDV 196 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 A +FL G + +++ + M+ + +E A R+++++LS + + Sbjct: 197 ANASRFLLGRQGEVMKELEQKMHAFASELKFEQAAAVRNQMSSLSTVLHQQAIEVGSDSD 256 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278 D ++ C+ G++ G +F Sbjct: 257 VDILAVVALGGRVCVNLAMVRGGRHLGDKAYFPAHVE 293 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 103/350 (29%), Positives = 168/350 (48%), Gaps = 27/350 (7%) Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 +++L F+ Q Y P +++S L+ +Q G+KV + QG++R + Sbjct: 395 ESEVLEAFIAQHYLGNRVPPVLVVSHAPATRELV-DVLIEQAGHKVTVLRQPQGQRRAWL 453 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHI---PKRIEIYDNSHIMGCSAVGC 398 A NA + + LS + S Q + T + RIE +D SH MG + Sbjct: 454 AMAEQNARLALARLLSEQGSQQARTRALTDTLGMECDDLAHVRIECFDISHTMGEATQAS 513 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN------------- 445 VV + ++YR++N+ + DD A MR VL RR+ +++ Sbjct: 514 CVVYHHHKMQSSEYRRYNI--TGITPGDDYAAMRQVLTRRYEKMVAQAAANASDEAVDLQ 571 Query: 446 -----EENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500 + +L + S P +V++DGGKGQ+ A+ V +L ++ + ++ +AKG Sbjct: 572 SDAAVDPSLAPEAAEPVASGGILPTIVLIDGGKGQVEIARQVFTELGLDTGM-LVGVAKG 630 Query: 501 PKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLD 558 R G+E G L L L + ++RDEAHRFAIT R +R K S L+ Sbjct: 631 EGRKVGLETLIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRGKTRQTSRLE 690 Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 E+ G+G R++ LL FG ++ + +S E LAS+EGIS+ +A +IY H Sbjct: 691 ELEGVGAKRRQRLLARFGGLRGVVAASVEDLASVEGISQALAEQIYRQLH 740 >gi|307730516|ref|YP_003907740.1| excinuclease ABC subunit C [Burkholderia sp. CCGE1003] gi|307585051|gb|ADN58449.1| excinuclease ABC, C subunit [Burkholderia sp. CCGE1003] Length = 743 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 108/277 (38%), Positives = 155/277 (55%), Gaps = 4/277 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D G VLYVGKA +L+KR+ SY + RI M+++I + TVT Sbjct: 18 QLPHLPGVYRYYDTHGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARVETTVTR 77 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T HK P + +R + + YFGP Sbjct: 78 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHKFPRMAYYRGAVDRKNQYFGP 136 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RC+ PC G I E Y V Sbjct: 137 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVGNIGEEDYARDV 196 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 A +FL G + +++ + M+ + +E A R+++++LS + + Sbjct: 197 ANASRFLLGRQGEVMKELEQKMHAFASELKFEQAAAVRNQMSSLSTVLHQQAIEVGSDSD 256 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278 D ++ C+ G++ G +F Sbjct: 257 VDILAVVALGGRVCVNLAMVRGGRHLGDKAYFPAHVE 293 Score = 255 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 102/350 (29%), Positives = 168/350 (48%), Gaps = 27/350 (7%) Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 +++L F+ Q Y P +++S L+ +Q G+KV + QG++R + Sbjct: 398 ESEVLEAFIAQHYLGNRVPPVLVVSHAPATRELV-DVLIEQAGHKVTVLRQPQGQRRAWL 456 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHI---PKRIEIYDNSHIMGCSAVGC 398 A NA + + LS + S Q + T + RIE +D SH MG + Sbjct: 457 AMAEQNARLALARLLSEQGSQQARTRALTDTLGMECDDLAHVRIECFDISHTMGEATQAS 516 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLI--------------- 443 VV + ++YR++N+ + DD A MR VL RR+ +++ Sbjct: 517 CVVYHHHKMQSSEYRRYNI--TGITPGDDYAAMRQVLTRRYEKMVAQAAANAADEAAELQ 574 Query: 444 ---KNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500 + +L + + P +V++DGGKGQ+ A+ V +L ++ + ++ +AKG Sbjct: 575 SDAAADPSLTPEAAEPVAAGGVLPTIVLIDGGKGQVEIARQVFTELGLDTGM-LVGVAKG 633 Query: 501 PKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLD 558 R G+E G L L L + ++RDEAHRFAIT R +R K S L+ Sbjct: 634 EGRKVGLETLIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRGKTRQTSRLE 693 Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 E+ G+G R++ LL FG ++ + +S E LAS+EGIS+ +A +IY H Sbjct: 694 ELEGVGAKRRQRLLARFGGLRGVVAASVEDLASVEGISQALAEQIYRQLH 743 >gi|289447017|ref|ZP_06436761.1| excinuclease ABC subunit C [Mycobacterium tuberculosis CPHL_A] gi|289419975|gb|EFD17176.1| excinuclease ABC subunit C [Mycobacterium tuberculosis CPHL_A] Length = 422 Score = 290 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 108/426 (25%), Positives = 193/426 (45%), Gaps = 30/426 (7%) Query: 213 EDYESAIIHRDRLAALSHIQNHNDSIYNR---MDCFSLYHNKNLACIQTCFFHFGQNRGT 269 D+E A RD L+AL + D + ++ A +Q G+ RG Sbjct: 1 MDFERAARLRDDLSALKRAMEKQAVVLGDGTDADVVAFADDELEAAVQVFHVRGGRVRGQ 60 Query: 270 CTFFLKTDSE--STNAQILSYFLRQFY------------TDKPCPENILLSEEAEETSLL 315 + ++ E + Q++ FL QFY + P P +L+ L Sbjct: 61 RGWIVEKPGEPGDSGIQLVEQFLTQFYGDQAALDDAADESANPVPREVLVPCLPSNAEEL 120 Query: 316 EISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI----LKDFTK 371 G +V + VP++G+KR + E NA + Q S L+ Sbjct: 121 ASWLSGLRGSRVVLRVPRRGDKRALAETVHRNAEDALQQHKLKRASDFNARSAALQSIQD 180 Query: 372 KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAM 430 L P RIE D SH+ G VG +VV + K+ YR F + + + DD A Sbjct: 181 SLGLADAPLRIECVDVSHVQGTDVVGSLVVFEDGLPRKSDYRHFGIREAAGQGRSDDVAC 240 Query: 431 MRMVLERRFSQLIKNEENLNF-HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE 489 + V RRF + ++++ + + P+++ F P++ ++DGG Q++AA V+ +L V Sbjct: 241 IAEVTRRRFLRHLRDQSDPDLLSPERKSRRFAYPPNLYVVDGGAPQVNAASAVIDELGVT 300 Query: 490 NRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR 549 + + +I +AK + E + + + +++ LY +QR+RDEAHRFAIT HR +R Sbjct: 301 D-VAVIGLAKRLE-----EVWVPSEPDPIIMPRNSEGLYLLQRVRDEAHRFAITYHRSKR 354 Query: 550 K-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 + S LD + G+G R++ L+ FG++ + ++ + + ++ GI A +++ Sbjct: 355 STRMTASALDSVPGLGEHRRKALVTHFGSIARLKEATVDEITAVPGIGVATATAVHDALR 414 Query: 609 KNTSHT 614 ++S Sbjct: 415 PDSSGA 420 >gi|13507864|ref|NP_109813.1| excinuclease ABC subunit C [Mycoplasma pneumoniae M129] gi|2499104|sp|P75350|UVRC_MYCPN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|1673677|gb|AAB95677.1| excinuclease ABC subunit C [Mycoplasma pneumoniae M129] Length = 586 Score = 290 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 134/583 (22%), Positives = 248/583 (42%), Gaps = 36/583 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + P PG Y D AG+VLYVGKA ++ KR+ Y + N + + ++ +I ++ + Sbjct: 11 KLKNAPHKPGCYLWKDDAGQVLYVGKAKDIFKRVHHYFNPNR-SFKTRALVERIADVEYV 69 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 + E +AL LEA +IK+ KPRFN++L+++ + Y IT K P L R + Y Sbjct: 70 ILKNENDALNLEAKLIKQYKPRFNLVLKENNGYLYFFITASVK-PTLELGRRYEFSKNKY 128 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPFAS + + L R PC +Q+K C G C GE + E+Y Sbjct: 129 FGPFASSKF--RLRDIYDLLLKLFPLRKCAPHERGHPCFYYQLKMCMGQCMGEDTPERYQ 186 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 V ++F + G + + + +A+ ++++E+A D A+ + N + + Sbjct: 187 TTVKGIEQFFNHGPEQVLNHLQQQEIKASEQQNFEAARHFLDLQKAVLELVNMQQTAFIK 246 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILS--YFLRQFYT 295 D KN+ I + Q G + + + F+ +Y+ Sbjct: 247 AKQSHDFIGYVFEKNVLAITVFAYVDNQLIGKNQQVFELPQDDEKEVESALVTFIYHYYS 306 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P+ + +S E SLL K+ +T PK GE++ I++ + NA + K Sbjct: 307 TNKIPKTLTVSLSEENLSLLA------NSLKINVTQPKNGEQKSILQTVIDNARYALNTK 360 Query: 356 LSTEISHQMILKDFTKKFAL--PHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413 + I++ + + L + +EI D S VG M+ +K R Sbjct: 361 WTGFINNLNRAEVHQQLAQLLQVPSIQSLEIIDISFYDKDHVVGAMLRYENGKRMKALSR 420 Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473 ++N++ + + A + + ++I Q + D++I+DGG Sbjct: 421 RYNINIDHKGDTNYMADV------VYRRII---------SSIQTHKQLPLSDLLIVDGGI 465 Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533 Q++ V + II +AK + + + + ++ P+ ++ + Sbjct: 466 AQINTVTKVFASFPNVTQPIIIGLAKNTRHQT--DHIVLTDNTTINIDKNTPLFAYLTTI 523 Query: 534 RDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSF 575 ++E FA KR +A + +PL +I G+G ++LL +F Sbjct: 524 QEEVDSFAKHNAFKRVSRARFQNPLLQIEGVGRKTVQILLDNF 566 >gi|187924865|ref|YP_001896507.1| excinuclease ABC subunit C [Burkholderia phytofirmans PsJN] gi|229558025|sp|B2SZU5|UVRC_BURPP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|187716059|gb|ACD17283.1| excinuclease ABC, C subunit [Burkholderia phytofirmans PsJN] Length = 731 Score = 290 bits (741), Expect = 7e-76, Method: Composition-based stats. Identities = 108/277 (38%), Positives = 155/277 (55%), Gaps = 4/277 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D G VLYVGKA +L+KR+ SY + RI M+++I I TVT Sbjct: 18 QLPHLPGVYRYYDTHGAVLYVGKARDLKKRVSSYFTKTLLSPRIAMMVTRIARIETTVTR 77 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T HK P + +R + + YFGP Sbjct: 78 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHKFPRMAYYRGAVDRKNQYFGP 136 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RC+ PC I+ E Y V Sbjct: 137 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVAAINEEDYARDV 196 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 A +FL G + +++ + M+ + +E A R+++++LS + + Sbjct: 197 ANASRFLLGRQGEVMKELEQKMHAFASELKFEQAAAVRNQMSSLSTVLHQQAIEVGSDSD 256 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278 D ++ C+ G++ G +F Sbjct: 257 VDILAVVALGGRVCVNLAMVRGGRHLGDKAYFPAHVE 293 Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats. Identities = 103/350 (29%), Positives = 168/350 (48%), Gaps = 27/350 (7%) Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 A++L F+ Q Y P +++S L+ +Q G+KV + QG++R + Sbjct: 386 EAEVLEAFIAQHYLGNRVPPVLVVSHAPANRELV-DVLIEQAGHKVTVLRQPQGQRRAWL 444 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHI---PKRIEIYDNSHIMGCSAVGC 398 A NA + + LS + S Q + T + RIE +D SH MG + Sbjct: 445 TMAEQNARLALARLLSEQGSQQARTRALTDTLGMECDDLAHLRIECFDISHTMGEATQAS 504 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLI--------------- 443 VV + ++YR++N+ + DD A MR VL RR+ +++ Sbjct: 505 CVVYHHHKMQSSEYRRYNI--TGITPGDDYAAMRQVLTRRYEKMVEQAAANAADEAAELQ 562 Query: 444 ---KNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500 + +L + + P +V++DGGKGQ+ A+ V +L ++ + ++ +AKG Sbjct: 563 SDAAADPSLTPDAAEPVAAGGILPTIVLIDGGKGQVEIARQVFTELGLDTGM-LVGVAKG 621 Query: 501 PKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLD 558 R G+E G L L L + ++RDEAHRFAIT R +R K S L+ Sbjct: 622 EGRKVGLETLIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRGKTRQTSRLE 681 Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 E+ G+G R++ LL FG ++ + +S E LAS+EGIS+ +A +IY H Sbjct: 682 ELEGVGAKRRQRLLARFGGLRGVVAASVEDLASVEGISQALAEQIYRQLH 731 >gi|167919863|ref|ZP_02506954.1| excinuclease ABC, C subunit [Burkholderia pseudomallei BCC215] gi|217420487|ref|ZP_03451992.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 576] gi|217395899|gb|EEC35916.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 576] Length = 747 Score = 290 bits (741), Expect = 7e-76, Method: Composition-based stats. Identities = 109/277 (39%), Positives = 154/277 (55%), Gaps = 4/277 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D VLYVGKA +L+KR+ SY + RI MI++I I TVT Sbjct: 19 QLPHLPGVYRYYDAQDAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMITRIARIETTVTR 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H+ P + +R + + YFGP Sbjct: 79 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RCS PC G I E Y V Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 197 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 A +FL G + ++ R M+ + +E A R+++++L+ + + Sbjct: 198 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 257 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278 +D ++ C+ G++ G +F Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVE 294 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 18/341 (5%) Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 ++L F+ Q Y P +++S L+++ +Q G+KV + QG+KR + Sbjct: 411 ETEVLEAFIAQHYLGNRVPPVLVVSHAPANRELIDLLV-EQAGHKVAVVRQPQGQKRAWL 469 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398 A NA + + LS + S Q + + RIE +D SH MG + Sbjct: 470 TMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 529 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449 VV + ++YR++N+ + DD A MR VL RR+ ++++ + Sbjct: 530 CVVYHHHRMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 587 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 + + S P+VV++DGG+GQ+ A+ V +L ++ + ++ +AKG R G+E Sbjct: 588 DGNAVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 646 Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567 G L L L + ++RDEAHRFAIT R +R K S L+E+ G+G R Sbjct: 647 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 706 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LL FG ++ + +S + LAS+EGIS+ +A +IY H Sbjct: 707 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 747 >gi|167720548|ref|ZP_02403784.1| putative excinuclease ABC subunit C [Burkholderia pseudomallei DM98] Length = 323 Score = 290 bits (741), Expect = 7e-76, Method: Composition-based stats. Identities = 109/277 (39%), Positives = 154/277 (55%), Gaps = 4/277 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D VLYVGKA +L+KR+ SY + RI MI++I I TVT Sbjct: 19 QLPHLPGVYRYYDAQDAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMITRIARIETTVTR 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H+ P + +R + + YFGP Sbjct: 79 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RCS PC G I E Y V Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 197 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 A +FL G + ++ R M+ + +E A R+++++L+ + + Sbjct: 198 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 257 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278 +D ++ C+ G++ G +F Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVE 294 >gi|119367637|sp|Q63SA4|UVRC_BURPS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C Length = 743 Score = 290 bits (741), Expect = 7e-76, Method: Composition-based stats. Identities = 109/277 (39%), Positives = 154/277 (55%), Gaps = 4/277 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D VLYVGKA +L+KR+ SY + RI MI++I I TVT Sbjct: 19 QLPHLPGVYRYYDAQDAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMITRIARIETTVTR 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H+ P + +R + + YFGP Sbjct: 79 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RCS PC G I E Y V Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 197 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 A +FL G + ++ R M+ + +E A R+++++L+ + + Sbjct: 198 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 257 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278 +D ++ C+ G++ G +F Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVE 294 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 18/341 (5%) Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 ++L F+ Q Y P +++S L+++ +Q G+KV + QG+KR + Sbjct: 407 ETEVLEAFIAQHYLGNRVPPVLVVSHAPANRELIDLLV-EQAGHKVAVVRQPQGQKRAWL 465 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398 A NA + + LS + S Q + + RIE +D SH MG + Sbjct: 466 TMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 525 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449 VV + ++YR++N+ + DD A MR VL RR+ ++++ + Sbjct: 526 CVVYHHHRMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 583 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 + + S P+VV++DGG+GQ+ A+ V +L ++ + ++ +AKG R G+E Sbjct: 584 DGNAVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 642 Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567 G L L L + ++RDEAHRFAIT R +R K S L+E+ G+G R Sbjct: 643 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 702 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LL FG ++ + +S + LAS+EGIS+ +A +IY H Sbjct: 703 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 743 >gi|76811250|ref|YP_334265.1| excinuclease ABC subunit C [Burkholderia pseudomallei 1710b] gi|254191254|ref|ZP_04897758.1| excinuclease ABC, C subunit [Burkholderia pseudomallei Pasteur 52237] gi|76580703|gb|ABA50178.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 1710b] gi|157938926|gb|EDO94596.1| excinuclease ABC, C subunit [Burkholderia pseudomallei Pasteur 52237] Length = 749 Score = 290 bits (741), Expect = 7e-76, Method: Composition-based stats. Identities = 109/277 (39%), Positives = 154/277 (55%), Gaps = 4/277 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D VLYVGKA +L+KR+ SY + RI MI++I I TVT Sbjct: 21 QLPHLPGVYRYYDAQDAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMITRIARIETTVTR 80 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H+ P + +R + + YFGP Sbjct: 81 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGP 139 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RCS PC G I E Y V Sbjct: 140 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 199 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 A +FL G + ++ R M+ + +E A R+++++L+ + + Sbjct: 200 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 259 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278 +D ++ C+ G++ G +F Sbjct: 260 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVE 296 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 18/341 (5%) Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 ++L F+ Q Y P +++S L+++ +Q G+KV + QG+KR + Sbjct: 413 ETEVLEAFIAQHYLGNRVPPVLVVSHAPANRELIDLLV-EQAGHKVAVVRQPQGQKRAWL 471 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398 A NA + + LS + S Q + + RIE +D SH MG + Sbjct: 472 TMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 531 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449 VV + ++YR++N+ + DD A MR VL RR+ ++++ + Sbjct: 532 CVVYHHHRMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 589 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 + + S P+VV++DGG+GQ+ A+ V +L ++ + ++ +AKG R G+E Sbjct: 590 DGNAVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 648 Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567 G L L L + ++RDEAHRFAIT R +R K S L+E+ G+G R Sbjct: 649 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 708 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LL FG ++ + +S + LAS+EGIS+ +A +IY H Sbjct: 709 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 749 >gi|53720026|ref|YP_109012.1| excinuclease ABC subunit C [Burkholderia pseudomallei K96243] gi|52210440|emb|CAH36423.1| putative excinuclease ABC subunit C [Burkholderia pseudomallei K96243] Length = 745 Score = 290 bits (741), Expect = 7e-76, Method: Composition-based stats. Identities = 109/277 (39%), Positives = 154/277 (55%), Gaps = 4/277 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D VLYVGKA +L+KR+ SY + RI MI++I I TVT Sbjct: 21 QLPHLPGVYRYYDAQDAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMITRIARIETTVTR 80 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H+ P + +R + + YFGP Sbjct: 81 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGP 139 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RCS PC G I E Y V Sbjct: 140 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 199 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 A +FL G + ++ R M+ + +E A R+++++L+ + + Sbjct: 200 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 259 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278 +D ++ C+ G++ G +F Sbjct: 260 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVE 296 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 18/341 (5%) Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 ++L F+ Q Y P +++S L+++ +Q G+KV + QG+KR + Sbjct: 409 ETEVLEAFIAQHYLGNRVPPVLVVSHAPANRELIDLLV-EQAGHKVAVVRQPQGQKRAWL 467 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398 A NA + + LS + S Q + + RIE +D SH MG + Sbjct: 468 TMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 527 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449 VV + ++YR++N+ + DD A MR VL RR+ ++++ + Sbjct: 528 CVVYHHHRMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 585 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 + + S P+VV++DGG+GQ+ A+ V +L ++ + ++ +AKG R G+E Sbjct: 586 DGNAVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 644 Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567 G L L L + ++RDEAHRFAIT R +R K S L+E+ G+G R Sbjct: 645 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 704 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LL FG ++ + +S + LAS+EGIS+ +A +IY H Sbjct: 705 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 745 >gi|254296881|ref|ZP_04964334.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 406e] gi|157807219|gb|EDO84389.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 406e] Length = 747 Score = 290 bits (741), Expect = 7e-76, Method: Composition-based stats. Identities = 109/277 (39%), Positives = 154/277 (55%), Gaps = 4/277 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D VLYVGKA +L+KR+ SY + RI MI++I I TVT Sbjct: 19 QLPHLPGVYRYYDAQDAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMITRIARIETTVTR 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H+ P + +R + + YFGP Sbjct: 79 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RCS PC G I E Y V Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 197 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 A +FL G + ++ R M+ + +E A R+++++L+ + + Sbjct: 198 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 257 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278 +D ++ C+ G++ G +F Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVE 294 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 18/341 (5%) Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 ++L F+ Q Y P +++S L+++ +Q G+KV + QG+KR + Sbjct: 411 ETEVLEAFIAQHYLGNRVPPVLVVSHAPANRELIDLLV-EQAGHKVAVVRQPQGQKRAWL 469 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398 A NA + + LS + S Q + + RIE +D SH MG + Sbjct: 470 TMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 529 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449 VV + ++YR++N+ + DD A MR VL RR+ ++++ + Sbjct: 530 CVVYHHHRMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 587 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 + + S P+VV++DGG+GQ+ A+ V +L ++ + ++ +AKG R G+E Sbjct: 588 DGNAVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 646 Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567 G L L L + ++RDEAHRFAIT R +R K S L+E+ G+G R Sbjct: 647 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 706 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LL FG ++ + +S + LAS+EGIS+ +A +IY H Sbjct: 707 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 747 >gi|126440938|ref|YP_001059790.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 668] gi|126454241|ref|YP_001067076.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 1106a] gi|134278027|ref|ZP_01764742.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 305] gi|226199886|ref|ZP_03795436.1| excinuclease ABC, C subunit [Burkholderia pseudomallei Pakistan 9] gi|237813184|ref|YP_002897635.1| excinuclease ABC, C subunit [Burkholderia pseudomallei MSHR346] gi|242315111|ref|ZP_04814127.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 1106b] gi|254195919|ref|ZP_04902345.1| excinuclease ABC, C subunit [Burkholderia pseudomallei S13] gi|254259510|ref|ZP_04950564.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 1710a] gi|119367636|sp|Q3JQ88|UVRC_BURP1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|189038029|sp|A3NXK5|UVRC_BURP0 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|189038030|sp|A3NBR9|UVRC_BURP6 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|126220431|gb|ABN83937.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 668] gi|126227883|gb|ABN91423.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 1106a] gi|134251677|gb|EBA51756.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 305] gi|169652664|gb|EDS85357.1| excinuclease ABC, C subunit [Burkholderia pseudomallei S13] gi|225927942|gb|EEH23979.1| excinuclease ABC, C subunit [Burkholderia pseudomallei Pakistan 9] gi|237504907|gb|ACQ97225.1| excinuclease ABC, C subunit [Burkholderia pseudomallei MSHR346] gi|242138350|gb|EES24752.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 1106b] gi|254218199|gb|EET07583.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 1710a] Length = 747 Score = 290 bits (741), Expect = 7e-76, Method: Composition-based stats. Identities = 109/277 (39%), Positives = 154/277 (55%), Gaps = 4/277 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D VLYVGKA +L+KR+ SY + RI MI++I I TVT Sbjct: 19 QLPHLPGVYRYYDAQDAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMITRIARIETTVTR 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H+ P + +R + + YFGP Sbjct: 79 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RCS PC G I E Y V Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 197 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 A +FL G + ++ R M+ + +E A R+++++L+ + + Sbjct: 198 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 257 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278 +D ++ C+ G++ G +F Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVE 294 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 18/341 (5%) Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 ++L F+ Q Y P +++S L+++ +Q G+KV + QG+KR + Sbjct: 411 ETEVLEAFIAQHYLGNRVPPVLVVSHAPANRELIDLLV-EQAGHKVAVVRQPQGQKRAWL 469 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398 A NA + + LS + S Q + + RIE +D SH MG + Sbjct: 470 TMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 529 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449 VV + ++YR++N+ + DD A MR VL RR+ ++++ + Sbjct: 530 CVVYHHHRMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 587 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 + + S P+VV++DGG+GQ+ A+ V +L ++ + ++ +AKG R G+E Sbjct: 588 DGNAVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 646 Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567 G L L L + ++RDEAHRFAIT R +R K S L+E+ G+G R Sbjct: 647 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 706 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LL FG ++ + +S + LAS+EGIS+ +A +IY H Sbjct: 707 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 747 >gi|254184219|ref|ZP_04890809.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 1655] gi|184214750|gb|EDU11793.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 1655] Length = 743 Score = 290 bits (741), Expect = 7e-76, Method: Composition-based stats. Identities = 109/277 (39%), Positives = 154/277 (55%), Gaps = 4/277 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D VLYVGKA +L+KR+ SY + RI MI++I I TVT Sbjct: 19 QLPHLPGVYRYYDAQDAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMITRIARIETTVTR 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H+ P + +R + + YFGP Sbjct: 79 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RCS PC G I E Y V Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 197 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 A +FL G + ++ R M+ + +E A R+++++L+ + + Sbjct: 198 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 257 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278 +D ++ C+ G++ G +F Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVE 294 Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats. Identities = 101/341 (29%), Positives = 168/341 (49%), Gaps = 18/341 (5%) Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 ++L F+ Q Y P +++S L+++ +Q G+KV + QG KR + Sbjct: 407 ETEVLEAFIAQHYLGNRVPPVLVVSHAPANRELIDLLV-EQAGHKVAVVRQPQGRKRAWL 465 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398 A NA + + LS + S Q + + RIE +D SH MG + Sbjct: 466 TMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 525 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449 VV + ++YR++N+ + DD A MR VL RR+ ++++ + Sbjct: 526 CVVYHHHRMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 583 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 + + S P+VV++DGG+GQ+ A+ V +L ++ + ++ +AKG R G+E Sbjct: 584 DGNAVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 642 Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567 G L L L + ++RDEAHRFAIT R +R K S L+E+ G+G R Sbjct: 643 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 702 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LL FG ++ + +S + LAS+EGIS+ +A +IY H Sbjct: 703 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 743 >gi|242309228|ref|ZP_04808383.1| UvrABC system protein C [Helicobacter pullorum MIT 98-5489] gi|239524269|gb|EEQ64135.1| UvrABC system protein C [Helicobacter pullorum MIT 98-5489] Length = 518 Score = 290 bits (741), Expect = 7e-76, Method: Composition-based stats. Identities = 163/547 (29%), Positives = 268/547 (48%), Gaps = 49/547 (8%) Query: 76 MIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG-SYFGPFASVDAVEKT 134 MIK+LKP++NILLRDDK++PY+ + P + R Q YFGP++S Sbjct: 1 MIKQLKPKYNILLRDDKTYPYLCVDISEDYPRILLTRKVFKSQSIHYFGPYSSGG--RDL 58 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194 ++SL TF L + CL +QIKRC PC G+IS E Y + + +A + + Sbjct: 59 LDSLYETFPLAQ--KESCLKGKKACLFYQIKRCLAPCEGKISKEDYRKILEQALECIQNP 116 Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM---DCFSLYHNK 251 + + + M + +E A++ RDR+A + I + + RM D F+L Sbjct: 117 KK-ILAILDKKMQFLSENLRFEEAMVLRDRIAKIKQISPLSGVDFARMEDLDIFALEIEG 175 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC--PENILLSEEA 309 N + F G+ + + +K+ E +I + L +Y+ + P+ IL+ + Sbjct: 176 NKGVLVKFFVRGGRVVSSASNVIKSQYELNIEEIYTQSLINYYSGEILIKPKQILIPYDL 235 Query: 310 -EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKD 368 E+ LE +++ K+ I PK G+K+++ AL NA S L+ IL D Sbjct: 236 KEKKDELEQFLYQKLHKKIPIHCPKSGDKKQLCNLALKNAKESLNLNLTASE---EILLD 292 Query: 369 FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDC 428 K F L ++P RIEI+D SH G VG MVV + F+K YR + ++ D+ Sbjct: 293 IQKLFGLQNMPYRIEIFDTSHHRGKQCVGAMVVY-DERFIKESYRHY-----LLEGSDEY 346 Query: 429 AMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNV 488 M+ +L+RR + + PD+ +LDGG GQ++ A+ +L V Sbjct: 347 LQMKEMLQRRIEKFKEE----------------VPPDLWVLDGGVGQINLAKDLLNSAGV 390 Query: 489 ENRITIISIAK-----GPKRSAG--MEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 + ++ I+K R+ G ++ +KG+ L D L F+Q+LRDEAHRFA Sbjct: 391 --NLEVVGISKEKLDSKAHRAKGAALDILRDEKGQEYRLKSSDKRLQFLQKLRDEAHRFA 448 Query: 542 ITTH-RKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 IT H ++++K S + E+ G+G ++ LL FG+ + I ++S + L + +SKK+A Sbjct: 449 ITFHQKQKQKTMQQSKVLEVKGVGKAIQKRLLAYFGSFEGIKKASLDELEKV--LSKKLA 506 Query: 601 CKIYNHF 607 +Y Sbjct: 507 KSVYEGL 513 >gi|167619246|ref|ZP_02387877.1| excinuclease ABC, C subunit [Burkholderia thailandensis Bt4] Length = 342 Score = 290 bits (741), Expect = 7e-76, Method: Composition-based stats. Identities = 108/277 (38%), Positives = 154/277 (55%), Gaps = 4/277 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D VLYVGKA +L+KR+ SY + RI M+++I I TVT Sbjct: 19 QLPHLPGVYRYYDAQEAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H+ P + +R + + YFGP Sbjct: 79 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMVYYRGAVDKKNQYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RCS PC G I E Y V Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFSNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 197 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 A +FL G + ++ R M+ + +E A R+++++L+ + + Sbjct: 198 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 257 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278 +D ++ C+ G++ G +F Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPTHVE 294 >gi|295677166|ref|YP_003605690.1| excinuclease ABC, C subunit [Burkholderia sp. CCGE1002] gi|295437009|gb|ADG16179.1| excinuclease ABC, C subunit [Burkholderia sp. CCGE1002] Length = 743 Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats. Identities = 110/277 (39%), Positives = 156/277 (56%), Gaps = 4/277 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D +G VLYVGKA +L+KR+ SY + RI M+++I I TVT Sbjct: 21 QLPHLPGVYRYYDTSGVVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 80 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T HK P + +R S + YFGP Sbjct: 81 SEAEALLLENNLIKALTPRYNILFRDDKSYPYLKLT-GHKFPRMAYYRGSVDRKNQYFGP 139 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RC+ PC IS E Y V Sbjct: 140 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVANISEEDYARDV 199 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 A +FL G + +++ + M+ + +E A R+++++LS + + Sbjct: 200 ANASRFLLGRQGEVMKELEQKMHAFASELKFEQAAAVRNQMSSLSTVLHQQAIEVGSDSD 259 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278 D ++ C+ G++ G +F Sbjct: 260 VDILAVVALGGRVCVNLAMVRGGRHLGDKAYFPTHVE 296 Score = 251 bits (640), Expect = 3e-64, Method: Composition-based stats. Identities = 101/350 (28%), Positives = 167/350 (47%), Gaps = 28/350 (8%) Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 +++L F+ Q Y P +++S + +Q G+KV + QG++R + Sbjct: 399 ESEVLEAFIAQHYLGNRVPPVLVVSHAPARELI--DVLIEQAGHKVSVLRQPQGQRRAWL 456 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHI---PKRIEIYDNSHIMGCSAVGC 398 A NA + + LS + S Q + T + RIE +D SH MG + Sbjct: 457 AMAEQNARLALARLLSEQGSQQARTRALTDTLGMECDDLAHLRIECFDISHTMGEATQAS 516 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN------------- 445 VV + ++YR++N+ + DD A MR VL RR+ +++ Sbjct: 517 CVVYHHHKMQSSEYRRYNI--TGITPGDDYAAMRQVLTRRYEKMVAQAAANASDEAAESQ 574 Query: 446 -----EENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500 + +L + + P +V++DGGKGQ+ A+ V +L ++ + ++ +AKG Sbjct: 575 TDAAADPSLAADAAEPAAAGGVLPTIVLIDGGKGQVEIARQVFTELGLDTGM-LVGVAKG 633 Query: 501 PKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLD 558 R G+E G L L L + ++RDEAHRFAIT R +R K S L+ Sbjct: 634 EGRKVGLETLIFADGRTPLELGKESAALMLVAQIRDEAHRFAITGMRAKRGKTRQTSRLE 693 Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 E+ G+G R++ LL FG ++ + +S E LAS+EGIS+ +A +IY H Sbjct: 694 ELEGVGAKRRQRLLARFGGLRGVVAASVEDLASVEGISQALAEQIYRQLH 743 >gi|167895233|ref|ZP_02482635.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 7894] Length = 337 Score = 289 bits (740), Expect = 8e-76, Method: Composition-based stats. Identities = 109/277 (39%), Positives = 154/277 (55%), Gaps = 4/277 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D VLYVGKA +L+KR+ SY + RI MI++I I TVT Sbjct: 19 QLPHLPGVYRYYDAQDAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMITRIARIETTVTR 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H+ P + +R + + YFGP Sbjct: 79 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RCS PC G I E Y V Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 197 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 A +FL G + ++ R M+ + +E A R+++++L+ + + Sbjct: 198 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 257 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278 +D ++ C+ G++ G +F Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVE 294 >gi|167825149|ref|ZP_02456620.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 9] Length = 338 Score = 289 bits (740), Expect = 8e-76, Method: Composition-based stats. Identities = 109/277 (39%), Positives = 154/277 (55%), Gaps = 4/277 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D VLYVGKA +L+KR+ SY + RI MI++I I TVT Sbjct: 19 QLPHLPGVYRYYDAQDAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMITRIARIETTVTR 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H+ P + +R + + YFGP Sbjct: 79 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RCS PC G I E Y V Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 197 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 A +FL G + ++ R M+ + +E A R+++++L+ + + Sbjct: 198 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 257 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278 +D ++ C+ G++ G +F Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVE 294 >gi|167581160|ref|ZP_02374034.1| excinuclease ABC, C subunit [Burkholderia thailandensis TXDOH] Length = 740 Score = 289 bits (740), Expect = 8e-76, Method: Composition-based stats. Identities = 108/277 (38%), Positives = 154/277 (55%), Gaps = 4/277 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D VLYVGKA +L+KR+ SY + RI M+++I I TVT Sbjct: 19 QLPHLPGVYRYYDAQEAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H+ P + +R + + YFGP Sbjct: 79 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RCS PC G I E Y V Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFSNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 197 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 A +FL G + ++ R M+ + +E A R+++++L+ + + Sbjct: 198 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 257 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278 +D ++ C+ G++ G +F Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPTHVE 294 Score = 255 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 100/341 (29%), Positives = 170/341 (49%), Gaps = 18/341 (5%) Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 ++L F+ Q Y P +++S L+++ +Q G+KV + QG+KR + Sbjct: 404 ETEVLEAFIAQHYLGNRVPPILVVSHAIANRELIDLLV-EQAGHKVALVRQPQGQKRAWL 462 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398 A NA + + LS + S Q + + RIE +D SH MG + Sbjct: 463 AMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 522 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449 VV + ++YR++N+ + DD A MR VL RR+ ++++ + Sbjct: 523 CVVYHHHKMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 580 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 + + + S P++V++DGG+GQ+ A+ V +L ++ + ++ +AKG R G+E Sbjct: 581 DGNAVQAAASAGRLPNIVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 639 Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567 G L L L + ++RDEAHRFAIT R +R K S L+E+ G+G R Sbjct: 640 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 699 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LL FG ++ + +S + LAS+EGIS+ +A +IY H Sbjct: 700 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 740 >gi|257138467|ref|ZP_05586729.1| excinuclease ABC, C subunit [Burkholderia thailandensis E264] gi|119367638|sp|Q2SXS5|UVRC_BURTA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C Length = 740 Score = 289 bits (740), Expect = 8e-76, Method: Composition-based stats. Identities = 108/277 (38%), Positives = 154/277 (55%), Gaps = 4/277 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D VLYVGKA +L+KR+ SY + RI M+++I I TVT Sbjct: 19 QLPHLPGVYRYYDAQEAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H+ P + +R + + YFGP Sbjct: 79 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RCS PC G I E Y V Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFSNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 197 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 A +FL G + ++ R M+ + +E A R+++++L+ + + Sbjct: 198 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 257 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278 +D ++ C+ G++ G +F Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPTHVE 294 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 100/341 (29%), Positives = 169/341 (49%), Gaps = 18/341 (5%) Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 ++L F+ Q Y P +++S L+++ +Q G+KV + QG+KR + Sbjct: 404 ETEVLEAFIAQHYLGNRVPPILVVSHAIANRELIDLLV-EQAGHKVALVRQPQGQKRAWL 462 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398 A NA + + LS + S Q + + RIE +D SH MG + Sbjct: 463 AMAEQNARLALARLLSEQGSQQARARSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 522 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449 VV + ++YR++N+ + DD A MR VL RR+ ++++ + Sbjct: 523 CVVYHHHKMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 580 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 + + S P++V++DGG+GQ+ A+ V +L ++ + ++ +AKG R G+E Sbjct: 581 DGNAVHAAASAGRLPNIVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 639 Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567 G L L L + ++RDEAHRFAIT R +R K S L+E+ G+G R Sbjct: 640 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 699 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LL FG ++ + +S + LAS+EGIS+ +A +IY H Sbjct: 700 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 740 >gi|83720723|ref|YP_442274.1| excinuclease ABC subunit C [Burkholderia thailandensis E264] gi|83654548|gb|ABC38611.1| excinuclease ABC, C subunit [Burkholderia thailandensis E264] Length = 742 Score = 289 bits (740), Expect = 8e-76, Method: Composition-based stats. Identities = 108/277 (38%), Positives = 154/277 (55%), Gaps = 4/277 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D VLYVGKA +L+KR+ SY + RI M+++I I TVT Sbjct: 21 QLPHLPGVYRYYDAQEAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 80 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H+ P + +R + + YFGP Sbjct: 81 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGP 139 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RCS PC G I E Y V Sbjct: 140 FPSAWAVRESIQILQRVFQLRTCEDSVFSNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 199 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 A +FL G + ++ R M+ + +E A R+++++L+ + + Sbjct: 200 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 259 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278 +D ++ C+ G++ G +F Sbjct: 260 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPTHVE 296 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 100/341 (29%), Positives = 169/341 (49%), Gaps = 18/341 (5%) Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 ++L F+ Q Y P +++S L+++ +Q G+KV + QG+KR + Sbjct: 406 ETEVLEAFIAQHYLGNRVPPILVVSHAIANRELIDLLV-EQAGHKVALVRQPQGQKRAWL 464 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398 A NA + + LS + S Q + + RIE +D SH MG + Sbjct: 465 AMAEQNARLALARLLSEQGSQQARARSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 524 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449 VV + ++YR++N+ + DD A MR VL RR+ ++++ + Sbjct: 525 CVVYHHHKMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 582 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 + + S P++V++DGG+GQ+ A+ V +L ++ + ++ +AKG R G+E Sbjct: 583 DGNAVHAAASAGRLPNIVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 641 Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567 G L L L + ++RDEAHRFAIT R +R K S L+E+ G+G R Sbjct: 642 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 701 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LL FG ++ + +S + LAS+EGIS+ +A +IY H Sbjct: 702 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 742 >gi|167739540|ref|ZP_02412314.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 14] Length = 342 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 109/277 (39%), Positives = 154/277 (55%), Gaps = 4/277 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D VLYVGKA +L+KR+ SY + RI MI++I I TVT Sbjct: 19 QLPHLPGVYRYYDAQDAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMITRIARIETTVTR 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H+ P + +R + + YFGP Sbjct: 79 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RCS PC G I E Y V Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 197 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 A +FL G + ++ R M+ + +E A R+++++L+ + + Sbjct: 198 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 257 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278 +D ++ C+ G++ G +F Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVE 294 >gi|167837337|ref|ZP_02464220.1| excinuclease ABC, C subunit [Burkholderia thailandensis MSMB43] Length = 721 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 107/277 (38%), Positives = 153/277 (55%), Gaps = 4/277 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D VLYVGKA +L+KR+ SY + RI M+++I + TVT Sbjct: 19 QLPHLPGVYRYYDAQDAVLYVGKARDLKKRVSSYFTKTQSSPRIAMMVTRIARVETTVTR 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H P + +R + + YFGP Sbjct: 79 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHAFPRMAYYRGAVDKKNQYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RCS PC G I E Y V Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 197 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 A +FL G + ++ R M+ + +E A R+++++L+ + + Sbjct: 198 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 257 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278 +D ++ C+ G++ G +F Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPTHVE 294 Score = 256 bits (654), Expect = 8e-66, Method: Composition-based stats. Identities = 101/341 (29%), Positives = 170/341 (49%), Gaps = 18/341 (5%) Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 ++L F+ Q Y P +++S L+++ +Q G+KV + QG+KR + Sbjct: 385 ETEVLEAFIAQHYLGNRVPPILVVSHAPANRELIDLLV-EQAGHKVAVVRQPQGQKRAWL 443 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398 A NA + + LS + S Q + + RIE +D SH MG + Sbjct: 444 AMAEQNARLALARLLSEQGSQQARTRALADVLGYESDDLAQLRIECFDISHTMGEATQAS 503 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449 VV + ++YR++N+ + DD A MR VL RR+ ++++ + Sbjct: 504 CVVYHHHKMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 561 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 + + S P++V++DGG+GQ+ A+ V +L ++ + ++ +AKG R G+E Sbjct: 562 DGNAVHAAASAGRLPNIVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 620 Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567 G L L L + ++RDEAHRFAIT R +R KA S L+E+ G+G R Sbjct: 621 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKARQTSRLEELEGVGAKR 680 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LL FG ++ + +S + LAS+EGIS+ +A +IY H Sbjct: 681 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 721 >gi|167570677|ref|ZP_02363551.1| excinuclease ABC, C subunit [Burkholderia oklahomensis C6786] Length = 739 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 109/277 (39%), Positives = 155/277 (55%), Gaps = 4/277 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D G VLYVGKA +L+KR+ SY + RI M+++I I TVT Sbjct: 19 QLPHLPGVYRYYDTQGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H P + +R + + YFGP Sbjct: 79 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHTFPRMAYYRGAVDKKNQYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RCS PC G I E Y V Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 197 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 A +FL G + ++ R M+ + +E A + R+++++L+ + + Sbjct: 198 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAALVRNQMSSLAKVLHQQAIDVGGDSD 257 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278 +D ++ C+ G++ G +F Sbjct: 258 VDILAVVALGGRVCVNLAMVRGGRHLGDKAYFPTHVE 294 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 99/341 (29%), Positives = 168/341 (49%), Gaps = 18/341 (5%) Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 ++L F+ Q Y P +++S L+++ +Q G+KV + QG+KR + Sbjct: 403 ETEVLEAFIAQHYLGNRVPPILVVSHAPANRELIDLL-IEQVGHKVAVVRQPQGQKRAWL 461 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPK---RIEIYDNSHIMGCSAVGC 398 A NA + + LS + S Q + RIE +D SH MG + Sbjct: 462 TMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLGLLRIECFDISHTMGEATQAS 521 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449 VV + ++YR++N+ + DD A MR VL RR+ ++++ + Sbjct: 522 CVVYHHHKMQSSEYRRYNI--TGITPGDDYAAMRQVLTRRYEKMVEEAAAEASAEEAAGI 579 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 + + S P++V++DGG+GQ+ A+ V +L ++ + ++ +AKG R G+E Sbjct: 580 DGNAVHAAASARGLPNIVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 638 Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567 G L L L + ++RDEAHRFAIT R +R K S L+E+ G+G R Sbjct: 639 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 698 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LL FG ++ + +S + LAS++GIS+ +A +IY H Sbjct: 699 RQRLLARFGGLRGVVAASVDELASVDGISRALAEQIYRQLH 739 >gi|167846646|ref|ZP_02472154.1| excinuclease ABC, C subunit [Burkholderia pseudomallei B7210] Length = 350 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 109/277 (39%), Positives = 154/277 (55%), Gaps = 4/277 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D VLYVGKA +L+KR+ SY + RI MI++I I TVT Sbjct: 19 QLPHLPGVYRYYDAQDAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMITRIARIETTVTR 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H+ P + +R + + YFGP Sbjct: 79 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RCS PC G I E Y V Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 197 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 A +FL G + ++ R M+ + +E A R+++++L+ + + Sbjct: 198 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 257 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278 +D ++ C+ G++ G +F Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVE 294 >gi|296158223|ref|ZP_06841055.1| excinuclease ABC, C subunit [Burkholderia sp. Ch1-1] gi|295891559|gb|EFG71345.1| excinuclease ABC, C subunit [Burkholderia sp. Ch1-1] Length = 741 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 108/277 (38%), Positives = 154/277 (55%), Gaps = 4/277 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D G VLYVGKA +L+KR+ SY + RI M+++I + TVT Sbjct: 18 QLPHLPGVYRYYDTHGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARVETTVTR 77 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T HK P + +R + + YFGP Sbjct: 78 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHKFPRMAYYRGAVDRKNQYFGP 136 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RC+ PC IS E Y V Sbjct: 137 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVAAISEEDYARDV 196 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 A +FL G + ++ + M+ + +E A R+++++LS + + Sbjct: 197 ANASRFLLGRQGEVMSELEQKMHAFASELKFEQAAAVRNQMSSLSTVLHQQAIEVGSDSD 256 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278 D ++ C+ G++ G +F Sbjct: 257 VDILAVVALGGRVCVNLAMVRGGRHLGDKAYFPAHVE 293 Score = 254 bits (648), Expect = 4e-65, Method: Composition-based stats. Identities = 102/350 (29%), Positives = 168/350 (48%), Gaps = 27/350 (7%) Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 +++L F+ Q Y P +++S L+ +Q G+KV + QG++R + Sbjct: 396 ESEVLEAFIAQHYLGNRVPPVLVVSHAPATRELV-DVLIEQAGHKVTVLRQPQGQRRAWL 454 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHI---PKRIEIYDNSHIMGCSAVGC 398 A NA + + LS + S Q + T + RIE +D SH MG + Sbjct: 455 AMAEQNARLALARLLSEQGSQQARTRALTDTLGMECDDLAHLRIECFDISHTMGEATQAS 514 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN------------- 445 VV + ++YR++N+ + DD A MR VL RR+ +++ Sbjct: 515 CVVYHHHKMQSSEYRRYNI--TGITPGDDYAAMRQVLTRRYEKMVAQAAANAADEAAELQ 572 Query: 446 -----EENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500 + +L + + P +V++DGGKGQ+ A+ V +L ++ + ++ +AKG Sbjct: 573 SDAAVDPSLAPDAAEPVAAGGVLPTIVLIDGGKGQVEIARQVFTELGLDTGM-LVGVAKG 631 Query: 501 PKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLD 558 R G+E G L L L + ++RDEAHRFAIT R +R K S L+ Sbjct: 632 EGRKVGLETLIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRGKTRQTSRLE 691 Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 E+ G+G R++ LL FG ++ + +S E LAS+EGIS+ +A +IY H Sbjct: 692 ELEGVGAKRRQRLLARFGGLRGVVAASVEDLASVEGISQALAEQIYRQLH 741 >gi|119367639|sp|Q13VN8|UVRC_BURXL RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C Length = 734 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 108/277 (38%), Positives = 154/277 (55%), Gaps = 4/277 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D G VLYVGKA +L+KR+ SY + RI M+++I + TVT Sbjct: 18 QLPHLPGVYRYYDTHGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARVETTVTR 77 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T HK P + +R + + YFGP Sbjct: 78 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHKFPRMAYYRGAVDRKNQYFGP 136 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RC+ PC IS E Y V Sbjct: 137 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVAAISEEDYARDV 196 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 A +FL G + ++ + M+ + +E A R+++++LS + + Sbjct: 197 ANASRFLLGRQGEVMSELEQKMHAFASELKFEQAAAVRNQMSSLSTVLHQQAIEVGSDSD 256 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278 D ++ C+ G++ G +F Sbjct: 257 VDILAVVALGGRVCVNLAMVRGGRHLGDKAYFPAHVE 293 Score = 254 bits (648), Expect = 4e-65, Method: Composition-based stats. Identities = 102/350 (29%), Positives = 168/350 (48%), Gaps = 27/350 (7%) Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 +++L F+ Q Y P +++S L+ +Q G+KV + QG++R + Sbjct: 389 ESEVLEAFIAQHYLGNRVPPVLVVSHAPATRELV-DVLIEQAGHKVTVLRQPQGQRRAWL 447 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHI---PKRIEIYDNSHIMGCSAVGC 398 A NA + + LS + S Q + T + RIE +D SH MG + Sbjct: 448 VMAEQNARLALARLLSEQGSQQARTRALTDTLGMECDDLAHLRIECFDISHTMGEATQAS 507 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLI--------------- 443 VV + ++YR++N+ + DD A MR VL RR+ +++ Sbjct: 508 CVVYHHHKMQSSEYRRYNI--TGITPGDDYAAMRQVLTRRYEKMVAQAAANAADEAAELQ 565 Query: 444 ---KNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500 + +L + + P +V++DGGKGQ+ A+ V +L ++ + ++ +AKG Sbjct: 566 SDAAADPSLAPDAAEPVAAGGVLPTIVLIDGGKGQVEIARQVFTELGLDTGM-LVGVAKG 624 Query: 501 PKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLD 558 R G+E G L L L + ++RDEAHRFAIT R +R K S L+ Sbjct: 625 EGRKVGLETLIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRGKTRQTSRLE 684 Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 E+ G+G R++ LL FG ++ + +S E LAS+EGIS+ +A +IY H Sbjct: 685 ELEGVGAKRRQRLLARFGGLRGVVAASVEDLASVEGISQALAEQIYRQLH 734 >gi|91784697|ref|YP_559903.1| excinuclease ABC subunit C [Burkholderia xenovorans LB400] gi|91688651|gb|ABE31851.1| Excinuclease ABC subunit C [Burkholderia xenovorans LB400] Length = 753 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 108/277 (38%), Positives = 154/277 (55%), Gaps = 4/277 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D G VLYVGKA +L+KR+ SY + RI M+++I + TVT Sbjct: 37 QLPHLPGVYRYYDTHGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARVETTVTR 96 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T HK P + +R + + YFGP Sbjct: 97 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHKFPRMAYYRGAVDRKNQYFGP 155 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RC+ PC IS E Y V Sbjct: 156 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVAAISEEDYARDV 215 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242 A +FL G + ++ + M+ + +E A R+++++LS + + Sbjct: 216 ANASRFLLGRQGEVMSELEQKMHAFASELKFEQAAAVRNQMSSLSTVLHQQAIEVGSDSD 275 Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278 D ++ C+ G++ G +F Sbjct: 276 VDILAVVALGGRVCVNLAMVRGGRHLGDKAYFPAHVE 312 Score = 254 bits (648), Expect = 4e-65, Method: Composition-based stats. Identities = 102/350 (29%), Positives = 168/350 (48%), Gaps = 27/350 (7%) Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 +++L F+ Q Y P +++S L+ +Q G+KV + QG++R + Sbjct: 408 ESEVLEAFIAQHYLGNRVPPVLVVSHAPATRELV-DVLIEQAGHKVTVLRQPQGQRRAWL 466 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHI---PKRIEIYDNSHIMGCSAVGC 398 A NA + + LS + S Q + T + RIE +D SH MG + Sbjct: 467 VMAEQNARLALARLLSEQGSQQARTRALTDTLGMECDDLAHLRIECFDISHTMGEATQAS 526 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLI--------------- 443 VV + ++YR++N+ + DD A MR VL RR+ +++ Sbjct: 527 CVVYHHHKMQSSEYRRYNI--TGITPGDDYAAMRQVLTRRYEKMVAQAAANAADEAAELQ 584 Query: 444 ---KNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500 + +L + + P +V++DGGKGQ+ A+ V +L ++ + ++ +AKG Sbjct: 585 SDAAADPSLAPDAAEPVAAGGVLPTIVLIDGGKGQVEIARQVFTELGLDTGM-LVGVAKG 643 Query: 501 PKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLD 558 R G+E G L L L + ++RDEAHRFAIT R +R K S L+ Sbjct: 644 EGRKVGLETLIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRGKTRQTSRLE 703 Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 E+ G+G R++ LL FG ++ + +S E LAS+EGIS+ +A +IY H Sbjct: 704 ELEGVGAKRRQRLLARFGGLRGVVAASVEDLASVEGISQALAEQIYRQLH 753 >gi|167563516|ref|ZP_02356432.1| excinuclease ABC, C subunit [Burkholderia oklahomensis EO147] Length = 741 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 109/277 (39%), Positives = 155/277 (55%), Gaps = 4/277 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D G VLYVGKA +L+KR+ SY + RI M+++I I TVT Sbjct: 21 QLPHLPGVYRYYDTQGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 80 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H P + +R + + YFGP Sbjct: 81 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHTFPRMAYYRGAVDKKNQYFGP 139 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RCS PC G I E Y V Sbjct: 140 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 199 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 A +FL G + ++ R M+ + +E A + R+++++L+ + + Sbjct: 200 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAALVRNQMSSLAKVLHQQAIDVGGDSD 259 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278 +D ++ C+ G++ G +F Sbjct: 260 VDILAVVALGGRLCVNLAMVRGGRHLGDKAYFPTHVE 296 Score = 255 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 99/341 (29%), Positives = 168/341 (49%), Gaps = 18/341 (5%) Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 ++L F+ Q Y P +++S L+++ +Q G+KV + QG+KR + Sbjct: 405 ETEVLEAFIAQHYLGNRVPPILVVSHAPANRELIDLL-IEQVGHKVAVVRQPQGQKRAWL 463 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPK---RIEIYDNSHIMGCSAVGC 398 A NA + + LS + S Q + RIE +D SH MG + Sbjct: 464 TMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLGLLRIECFDISHTMGEATQAS 523 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449 VV + ++YR++N+ + DD A MR VL RR+ ++++ + Sbjct: 524 CVVYHHHKMQSSEYRRYNI--TGITPGDDYAAMRQVLTRRYEKMVEEAAAEASAEEAAGI 581 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 + + S P++V++DGG+GQ+ A+ V +L ++ + ++ +AKG R G+E Sbjct: 582 DGNAVHAAASAGGLPNIVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 640 Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567 G L L L + ++RDEAHRFAIT R +R K S L+E+ G+G R Sbjct: 641 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 700 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LL FG ++ + +S + LAS++GIS+ +A +IY H Sbjct: 701 RQRLLARFGGLRGVVAASVDELASVDGISRALAEQIYRQLH 741 >gi|254357715|ref|ZP_04973988.1| excinuclease ABC, C subunit [Burkholderia mallei 2002721280] gi|148026842|gb|EDK84863.1| excinuclease ABC, C subunit [Burkholderia mallei 2002721280] Length = 747 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 109/277 (39%), Positives = 155/277 (55%), Gaps = 4/277 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D+ VLYVGKA +L+KR+ SY + RI MI++I I TVT Sbjct: 19 QLPHLPGVYRYYDVQDAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMITRIARIETTVTR 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H+ P + +R + + YFGP Sbjct: 79 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RCS PC G I E Y V Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 197 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 A +FL G + ++ R M+ + +E A R+++++L+ + + Sbjct: 198 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 257 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278 +D ++ C+ G++ G +F Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVE 294 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 18/341 (5%) Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 ++L F+ Q Y P +++S L+++ +Q G+KV + QG+KR + Sbjct: 411 ETEVLEAFIAQHYLGNRVPPVLVVSHAPANRELIDLLV-EQAGHKVAVVRQPQGQKRAWL 469 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398 A NA + + LS + S Q + + RIE +D SH MG + Sbjct: 470 TMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 529 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449 VV + ++YR++N+ + DD A MR VL RR+ ++++ + Sbjct: 530 CVVYHHHRMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 587 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 + + S P+VV++DGG+GQ+ A+ V +L ++ + ++ +AKG R G+E Sbjct: 588 DGNAVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 646 Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567 G L L L + ++RDEAHRFAIT R +R K S L+E+ G+G R Sbjct: 647 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 706 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LL FG ++ + +S + LAS+EGIS+ +A +IY H Sbjct: 707 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 747 >gi|53726362|ref|YP_102348.1| excinuclease ABC subunit C [Burkholderia mallei ATCC 23344] gi|52429785|gb|AAU50378.1| excinuclease ABC, C subunit [Burkholderia mallei ATCC 23344] Length = 749 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 109/277 (39%), Positives = 155/277 (55%), Gaps = 4/277 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D+ VLYVGKA +L+KR+ SY + RI MI++I I TVT Sbjct: 21 QLPHLPGVYRYYDVQDAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMITRIARIETTVTR 80 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H+ P + +R + + YFGP Sbjct: 81 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGP 139 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RCS PC G I E Y V Sbjct: 140 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 199 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 A +FL G + ++ R M+ + +E A R+++++L+ + + Sbjct: 200 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 259 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278 +D ++ C+ G++ G +F Sbjct: 260 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVE 296 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 18/341 (5%) Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 ++L F+ Q Y P +++S L+++ +Q G+KV + QG+KR + Sbjct: 413 ETEVLEAFIAQHYLGNRVPPVLVVSHAPANRELIDLLV-EQAGHKVAVVRQPQGQKRAWL 471 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398 A NA + + LS + S Q + + RIE +D SH MG + Sbjct: 472 TMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 531 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449 VV + ++YR++N+ + DD A MR VL RR+ ++++ + Sbjct: 532 CVVYHHHRMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 589 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 + + S P+VV++DGG+GQ+ A+ V +L ++ + ++ +AKG R G+E Sbjct: 590 DGNAVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 648 Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567 G L L L + ++RDEAHRFAIT R +R K S L+E+ G+G R Sbjct: 649 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 708 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LL FG ++ + +S + LAS+EGIS+ +A +IY H Sbjct: 709 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 749 >gi|67641145|ref|ZP_00439930.1| excinuclease ABC, C subunit [Burkholderia mallei GB8 horse 4] gi|121599778|ref|YP_993761.1| excinuclease ABC, C subunit [Burkholderia mallei SAVP1] gi|124384524|ref|YP_001028773.1| excinuclease ABC, C subunit [Burkholderia mallei NCTC 10229] gi|126448863|ref|YP_001081319.1| excinuclease ABC, C subunit [Burkholderia mallei NCTC 10247] gi|167000789|ref|ZP_02266596.1| excinuclease ABC, C subunit [Burkholderia mallei PRL-20] gi|254178189|ref|ZP_04884844.1| excinuclease ABC, C subunit [Burkholderia mallei ATCC 10399] gi|254199241|ref|ZP_04905607.1| excinuclease ABC, C subunit [Burkholderia mallei FMH] gi|254205548|ref|ZP_04911900.1| excinuclease ABC, C subunit [Burkholderia mallei JHU] gi|119367635|sp|Q62LS1|UVRC_BURMA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|189038026|sp|A3MM33|UVRC_BURM7 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|189038027|sp|A2SA04|UVRC_BURM9 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|189038028|sp|A1V6A8|UVRC_BURMS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|121228588|gb|ABM51106.1| excinuclease ABC, C subunit [Burkholderia mallei SAVP1] gi|124292544|gb|ABN01813.1| excinuclease ABC, C subunit [Burkholderia mallei NCTC 10229] gi|126241733|gb|ABO04826.1| excinuclease ABC, C subunit [Burkholderia mallei NCTC 10247] gi|147748837|gb|EDK55911.1| excinuclease ABC, C subunit [Burkholderia mallei FMH] gi|147752991|gb|EDK60056.1| excinuclease ABC, C subunit [Burkholderia mallei JHU] gi|160699228|gb|EDP89198.1| excinuclease ABC, C subunit [Burkholderia mallei ATCC 10399] gi|238522011|gb|EEP85458.1| excinuclease ABC, C subunit [Burkholderia mallei GB8 horse 4] gi|243063337|gb|EES45523.1| excinuclease ABC, C subunit [Burkholderia mallei PRL-20] Length = 747 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 109/277 (39%), Positives = 155/277 (55%), Gaps = 4/277 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D+ VLYVGKA +L+KR+ SY + RI MI++I I TVT Sbjct: 19 QLPHLPGVYRYYDVQDAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMITRIARIETTVTR 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H+ P + +R + + YFGP Sbjct: 79 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGP 137 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RCS PC G I E Y V Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 197 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241 A +FL G + ++ R M+ + +E A R+++++L+ + + Sbjct: 198 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 257 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278 +D ++ C+ G++ G +F Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVE 294 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 18/341 (5%) Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 ++L F+ Q Y P +++S L+++ +Q G+KV + QG+KR + Sbjct: 411 ETEVLEAFIAQHYLGNRVPPVLVVSHAPANRELIDLLV-EQAGHKVAVVRQPQGQKRAWL 469 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398 A NA + + LS + S Q + + RIE +D SH MG + Sbjct: 470 TMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 529 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449 VV + ++YR++N+ + DD A MR VL RR+ ++++ + Sbjct: 530 CVVYHHHRMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 587 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 + + S P+VV++DGG+GQ+ A+ V +L ++ + ++ +AKG R G+E Sbjct: 588 DGNAVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 646 Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567 G L L L + ++RDEAHRFAIT R +R K S L+E+ G+G R Sbjct: 647 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 706 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LL FG ++ + +S + LAS+EGIS+ +A +IY H Sbjct: 707 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 747 >gi|78356061|ref|YP_387510.1| excinuclease ABC subunit C [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|90111068|sp|Q313T1|UVRC_DESDG RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|78218466|gb|ABB37815.1| Excinuclease ABC subunit C [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 700 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 101/313 (32%), Positives = 153/313 (48%), Gaps = 5/313 (1%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTC 64 +P PGVY D AG+V+YVGKA +L++R+ SY HT + M+ + T Sbjct: 9 IPTTPGVYLYKDPAGKVVYVGKAKHLRRRVASYFRDIQRHTPKTRAMLRSAATVETLSTT 68 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLEA++IK+ +PR+NILLRDDK + +T KH P L R +YFGP Sbjct: 69 TEKEALLLEASLIKKHRPRYNILLRDDKQYVLFQLTRKHHWPRLVLTRKVRKDGSAYFGP 128 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S A +T + + F LR C+D FR+R RPCL + +C GPC ++ + YM+ V Sbjct: 129 FTSGQAARQTWKVIHKVFPLRRCSDKAFRNRVRPCLYHFMNQCPGPCVLDVDRDGYMQMV 188 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NR 241 + + L+G + L + + +M A+ ++E A + RD+L A+ ++ + Sbjct: 189 RKVEMLLAGRSTELIDMLRADMQAASDALEFEEAALLRDQLQAVERTVERQAAVLPGVHD 248 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DKPCP 300 MD L + F FF + ++L FL Q+Y P Sbjct: 249 MDAVGLAEAGGGLALSVLFIRRSVLLDKRNFFWSGLTLEEGPEVLLSFLTQYYGPGSFIP 308 Query: 301 ENILLSEEAEETS 313 IL+ + Sbjct: 309 PRILVPWDIRTED 321 Score = 163 bits (413), Expect = 7e-38, Method: Composition-based stats. Identities = 73/305 (23%), Positives = 122/305 (40%), Gaps = 35/305 (11%) Query: 316 EISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFAL 375 + G V++ P+ +++ A NA + +++ K + Sbjct: 417 AEMLTELRGGPVRVLPPRNATDNQLVTMATENAREDARAEKRPDVAGV-----IAAKLGM 471 Query: 376 PHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVL 435 P RIE D SH G + +VV ++QYR + ++ Sbjct: 472 SAPPVRIEAVDVSHTGGSNTRVGVVVFENGTPARDQYRTYAFADDEAGG----------- 520 Query: 436 ERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITII 495 + L ++ +S P WPD++++DGG+GQL+A L+ + Sbjct: 521 --------DDTGVLALWAVRRVHSGPPWPDLLLVDGGRGQLAAVMTALESAGAGGLFAVA 572 Query: 496 SIAK-------GPKRSAGM---EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545 SIAK R AG F + + P L F+Q +RD H +AI H Sbjct: 573 SIAKARNEETGRADRRAGNLADRIFLPGRSNPVNFKSGSPELLFLQHVRDTVHDYAIGRH 632 Query: 546 RKRRKKAAYS-PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 R+ R AA S L + GIGP RLL + F +++ + + + LA++ GI K A I+ Sbjct: 633 RRARSGAALSGELQRMQGIGPATARLLWEHFSSLQEMVDAGEKGLAALPGIGKAKAAVIH 692 Query: 605 NHFHK 609 + Sbjct: 693 EGLKR 697 >gi|312795551|ref|YP_004028473.1| Excinuclease ABC subunit C [Burkholderia rhizoxinica HKI 454] gi|312167326|emb|CBW74329.1| Excinuclease ABC subunit C [Burkholderia rhizoxinica HKI 454] Length = 781 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 109/280 (38%), Positives = 152/280 (54%), Gaps = 7/280 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+P PGVY+ D G VLYVGKA +L+KR+ SY + RI M+ +I I TVT Sbjct: 25 QLPHLPGVYRYYDAQGAVLYVGKARDLKKRVSSYFTRTLVSPRIALMVQRIARIETTVTR 84 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T H+ P + +R + YFGP Sbjct: 85 SEAEALLLENNLIKALTPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKNNQYFGP 143 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F S AV ++I LQR F LR+C DSVF +RTRPCLL QI RC+ PC G IS E Y V Sbjct: 144 FPSSWAVRESIQILQRVFQLRTCEDSVFSNRTRPCLLHQIGRCTAPCVGAISDEDYARDV 203 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY----- 239 A +FL G + ++ M+ + +E A R+++++LS + + Sbjct: 204 TNAARFLQGRQREVMNELEDKMHGYAAELKFEQAAAVRNQMSSLSKVLHQQAIEVGAERG 263 Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278 D ++ C+ G++ G +F Sbjct: 264 SGDADILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPSHVE 303 Score = 251 bits (642), Expect = 2e-64, Method: Composition-based stats. Identities = 105/361 (29%), Positives = 170/361 (47%), Gaps = 31/361 (8%) Query: 275 KTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQ 334 K + A++L F+ Q Y P P I++S L+ +Q G+KV + Q Sbjct: 425 KAARDGIEAEVLDAFIAQHYIGHPVPPVIIVSHAPATRELV-DVLAQQCGHKVSLIRQPQ 483 Query: 335 GEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPK---RIEIYDNSHIM 391 G+KR + A NA + + LS + S Q + + ++ RIE +D SH M Sbjct: 484 GQKRAWLSMAEQNARLALARLLSEQGSQQARTRALAQVLSIDLEDLSSLRIECFDISHTM 543 Query: 392 GCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN------ 445 G + VV + +YR++N+ + DD A MR VL RR+ +++ Sbjct: 544 GEATQASCVVYHHHKMQSAEYRRYNI--TGITPGDDYAAMRQVLTRRYEKVVSQLAGASS 601 Query: 446 ----------------EENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE 489 + P +V++DGGKGQ+ A+ V +L ++ Sbjct: 602 TLPADVQPPARDAAPARDAQPAAQAGAVAGAGVLPHIVLIDGGKGQVEIARQVFTELGLD 661 Query: 490 NRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKR 548 I ++ +AKG R G+E G L L L + ++RDEAHRFAIT R + Sbjct: 662 AGI-LVGVAKGEGRKVGLETLVFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAK 720 Query: 549 RKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 R KA +S L+E+ G+G R++ LL FG ++ + +S + LAS+EG+S+ +A +IY+ Sbjct: 721 RAKARHSSRLEELEGVGAKRRQRLLARFGGLRGVMSASIDELASVEGVSRALAEQIYHQL 780 Query: 608 H 608 H Sbjct: 781 H 781 >gi|218709937|ref|YP_002417558.1| putative excinuclease ABC subunit C [Vibrio splendidus LGP32] gi|218322956|emb|CAV19133.1| putative excinuclease ABC subunit C [Vibrio splendidus LGP32] Length = 352 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 114/318 (35%), Positives = 175/318 (55%), Gaps = 9/318 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + E PGVY+M + V+YVGKA NL+KR+ SY + + ++S I+ I TV Sbjct: 11 LKTVTEQPGVYRMYNAEAVVIYVGKAKNLKKRLSSYFRKKVDSEKTRALVSNIDKIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EAL+LE N IK+ P++N+LLRDDKS+PYI I+ HK P L HR + +G YF Sbjct: 71 THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFIS-GHKHPRLSMHRGAKKKKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYM 181 GP+ AV +T++ LQ+ F R C D+V+ +RTRPCL++QI RC+ PC IS E+Y Sbjct: 130 GPYPDSGAVRETLHLLQKIFPARQCEDTVYANRTRPCLMYQIGRCAAPCVSSIISDEEYS 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240 E + + FL G + + E + M+ A+ + +E A RD++ A+ +Q + Sbjct: 190 ELIDYVRLFLQGKDKLVLETLIEKMDTASRELRFEQAAAFRDQIQAIRRVQEQQYVSDDS 249 Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY---- 294 MD +ACI G+ G+ + F K + + ++ S FL Q+Y Sbjct: 250 MEDMDVLGFAQENGVACIHILMIRQGKVLGSRSHFPKIPNNTVREEVFSSFLSQYYLAHN 309 Query: 295 TDKPCPENILLSEEAEET 312 + P ++L+ + E Sbjct: 310 EARTIPTRLILNADLMED 327 >gi|111657553|ref|ZP_01408293.1| hypothetical protein SpneT_02001254 [Streptococcus pneumoniae TIGR4] Length = 346 Score = 283 bits (725), Expect = 5e-74, Method: Composition-based stats. Identities = 86/323 (26%), Positives = 145/323 (44%), Gaps = 9/323 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G + + + + M A ++E A +RD + A+ ++ + Sbjct: 182 SMAQEVSDFLKGQDDKIIDDLKSKMAVAAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFK 321 P +L+ ++ +E ++ + K Sbjct: 302 VPNEVLIPQDIDEEAVKALVDSK 324 >gi|15828627|ref|NP_325987.1| excinuclease ABC subunit C [Mycoplasma pulmonis UAB CTIP] gi|14089569|emb|CAC13329.1| EXCINUCLEASE ABC SUBUNIT C [Mycoplasma pulmonis] Length = 563 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 136/609 (22%), Positives = 222/609 (36%), Gaps = 59/609 (9%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+ PGVY D +LY+GKA NL R+K Y + ++++ ++ +I N Sbjct: 5 KLDSVPKKPGVYFWKDQFNSILYIGKANNLNDRMKQYFKGSLNSYKTHALVEKIANFEII 64 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI--QG 119 + EAL+LE N+I++ KP +NILL DDK F YI I + R Sbjct: 65 IVQNPKEALILERNLIRKHKPYYNILLSDDKRFSYIKIFLNKDGLEISIARRVYKNSQNT 124 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 Y+GPF + + LQR +G S Sbjct: 125 LYYGPFPTGHGSSIILKLLQREALYE----------------------NGIFIENKDSVF 162 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + + + K LS N+ +I M A +E A + L ++ + Sbjct: 163 WKQRFEKIKDILSFKNNLYLNQIKEKMLIAAQNYQFEVANNLKLSHEYLMKLKESQIAEL 222 Query: 240 N---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 +D S+ L F+ +G ++ + + F+ +FY + Sbjct: 223 KKILNIDVISIIEKNGLLFSTIFFYKYGVLLNKVDHIIEIKI--SFEASVEEFINEFYKN 280 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 K P ++L + + +L K K I + E L N + L Sbjct: 281 KIAPNLLILDKSFLKFNLELNFETKVLYPKKGIYKKLID---LVNENTLTNINEKEKVHL 337 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + L + + RI + DNSH + +V + N+YRKFN Sbjct: 338 LKIEKTKNNLDKLSNLINVK-NLHRIVMMDNSHFANFHPISVVVSYIDGIKNTNEYRKFN 396 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 L N + D L+ S+ PD+ I+DG QL Sbjct: 397 LDVNHDRKADIEYFKEGFLKYINSK------------------SFIVPDLFIVDGSFAQL 438 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 + +KK N+ II++ K + E L + F+ +++E Sbjct: 439 HEVKKQMKKANLT--FPIIALVKDDFHRTKK---LIDTNEKEHLLEDKEVKNFLSMIQNE 493 Query: 537 AHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 +FA H RR K + L I G+GP ++ L+ F T I +S + LA + I Sbjct: 494 VDQFAKKHHYNRRDKSSLEGSLLNIKGLGPKMEKKLISHFETYSNIYNASEKELAKV--I 551 Query: 596 SKKIACKIY 604 IA KI Sbjct: 552 PLNIAKKIK 560 >gi|237800461|ref|ZP_04588922.1| excinuclease ABC subunit C [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023320|gb|EGI03377.1| excinuclease ABC subunit C [Pseudomonas syringae pv. oryzae str. 1_6] Length = 322 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 108/297 (36%), Positives = 170/297 (57%), Gaps = 6/297 (2%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D +LYVGKA NL+KR+ SY H + ++++I I T+T E EALLLE Sbjct: 1 MFDAEATLLYVGKAKNLKKRLASYFRKTGHAPKTGALVARIAQIETTITGNETEALLLEQ 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 +IK +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S A+ ++ Sbjct: 61 TLIKEWRPPYNILLRDDKSYPYVFLSDN-AFPRLSIHRGAKKAKGRYFGPYPSAGAIRES 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194 ++ LQ+TF +R C DS F++RTRPCL +QIKRC GPC G + E Y E V + FL G Sbjct: 120 LSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSVMFLEGR 179 Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFSLYHNKN 252 ++ L +++ +M +A + D+E A RD++A + +Q+ +D + + N Sbjct: 180 SNALSDELNASMEKAAMALDFERAAELRDQVALMRRVQDQQSMDGGTGDVDVVAAFVNPG 239 Query: 253 LACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENILLS 306 AC+ G+ G+ FF + E +++S FL Q++ D+ P ++++ Sbjct: 240 GACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAFLAQYFLGGIDRELPGEVIVN 296 >gi|148988983|ref|ZP_01820383.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP6-BS73] gi|147925480|gb|EDK76557.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP6-BS73] Length = 346 Score = 283 bits (724), Expect = 7e-74, Method: Composition-based stats. Identities = 86/323 (26%), Positives = 147/323 (45%), Gaps = 9/323 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + +EALLLE N+IK KP++NI+L+DDKS+P+I IT+ + P L R G Y Sbjct: 67 VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ V A + L R F R C + ++ C + I +C + + Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDETYFK 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 E FL G ++ + +++ M A ++E A +RD + A+ ++ + Sbjct: 182 SMAQEVSDFLKGQDNKIIDELKGKMAAAAQTMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D F Y +K C+Q F G+ ++ + Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301 Query: 299 CPENILLSEEAEETSLLEISFFK 321 P +L+ ++ +E ++ + K Sbjct: 302 VPNEVLIPQDIDEEAVKALVDTK 324 >gi|289626300|ref|ZP_06459254.1| excinuclease ABC subunit C [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 321 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 110/297 (37%), Positives = 170/297 (57%), Gaps = 6/297 (2%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D +LYVGKA NL+KR+ SY H + ++S+I I T+T E EALLLE Sbjct: 1 MFDAEATLLYVGKAKNLKKRLASYFRKTGHAPKTGALVSRIAQIETTITGNETEALLLEQ 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 +IK +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S A+ ++ Sbjct: 61 TLIKEWRPPYNILLRDDKSYPYVFLSDG-NYPRLSIHRGAKKAKGRYFGPYPSAGAIRES 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194 ++ LQ+TF +R C DS F++RTRPCL +QIKRC GPC G + E Y E V + FL G Sbjct: 120 LSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSVMFLEGR 179 Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFSLYHNKN 252 ++ L +++ +M +A + D+E A RD++A L +Q+ +D + + N Sbjct: 180 SNALSDELNASMEKAAMALDFERAAELRDQVALLRRVQDQQSMDGGTGDVDVVAAFVNPG 239 Query: 253 LACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENILLS 306 AC+ G+ G+ FF + E +++S FL Q++ D+ P ++++ Sbjct: 240 GACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAFLAQYFLGGIDRELPGEVIVN 296 >gi|308190195|ref|YP_003923126.1| UvrABC system protein C [Mycoplasma fermentans JER] gi|307624937|gb|ADN69242.1| UvrABC system protein C [Mycoplasma fermentans JER] Length = 574 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 138/614 (22%), Positives = 243/614 (39%), Gaps = 66/614 (10%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PG+Y D +V+YVGKA NL+KR+ Y ++++ + ++ +I + Sbjct: 10 LKNVSTAPGIYLWKDKNDQVIYVGKAKNLRKRMHQYFEGAINSYKTSRLVEEIRAYEVFI 69 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS-- 120 T EALLLE I + P +NILL DD+ +PY+ + + + R + Sbjct: 70 CKTNKEALLLEKLYIDKYNPEYNILLLDDRRYPYLKVQLSDRGLDISLSRKIGKKNETNK 129 Query: 121 --YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 YFGPF + + L+R F G + Sbjct: 130 LFYFGPFPIGYGSIQILKLLEREAFYE----------------------KGLKIKNNDPK 167 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 + E ++ K LS +++ +I M + E +E A + L + Sbjct: 168 FWQEKFNKIKSILSFKDNSYINEIKEKMFKEAEAEHFELARDLKLSWEYLKKLNEEQIIE 227 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + +D F+ N+ + F+ G L D + + L F ++Y Sbjct: 228 LKDIHNLDVFAYKTVDNIIYMTILFYRSGLLINKDNQALNIDIDE--IETLEKFFNKYYE 285 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH--- 352 +K P+ IL+ E+ + I PK G+K++++E A +N Sbjct: 286 NKIKPDEILVEEKINNL-------NLNLDENLNIVTPKIGDKKRVLEIAQLNLEEYFSKE 338 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + H +++ + KK K I ++DNS++ + VG +V KN Y Sbjct: 339 HLLIKNKNDHALLMLEEFKKLIKIDSLKNIILFDNSNLANSNPVGVAIVYSNGLKNKNLY 398 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472 RKFN H + + D M+ +++ FS ++ D++I+DGG Sbjct: 399 RKFN-HIDIYSREADVEYMKESIKKYFSSADNKKDF----------------DLIIVDGG 441 Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532 Q+ A+ VL L++ +I I+ + K + + +L F+ Sbjct: 442 LAQIHEAKKVLFDLDI--KIPIVGLVKDDFHRTRALIDLQENLVKI---KNKDLLNFLAS 496 Query: 533 LRDEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 ++ E RFA + R R R L I G+G + LL +F T I + E L Sbjct: 497 MQIEVDRFAKSHLRNRNRITTFEGSLQSIKGLGKCAETKLLNTFKTYVNIFNAPLEELEK 556 Query: 592 IEGISKKIACKIYN 605 + +SKKIA +I Sbjct: 557 V--VSKKIALEIKK 568 >gi|319777505|ref|YP_004137156.1| uvrabc system protein c [Mycoplasma fermentans M64] gi|318038580|gb|ADV34779.1| UvrABC system protein C [Mycoplasma fermentans M64] Length = 574 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 138/614 (22%), Positives = 243/614 (39%), Gaps = 66/614 (10%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PG+Y D +V+YVGKA NL+KR+ Y ++++ + ++ +I + Sbjct: 10 LKNVSTAPGIYLWKDKNDQVIYVGKAKNLRKRMHQYFEGAINSYKTSRLVEEIRAYEVFI 69 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS-- 120 T EALLLE I + P +NILL DD+ +PY+ + + + R + Sbjct: 70 CKTNKEALLLEKLYIDKYNPEYNILLLDDRRYPYLKVQLSDRGLDISLSRKIGKKNETNK 129 Query: 121 --YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 YFGPF + + L+R F G + Sbjct: 130 LFYFGPFPIGYGSIQILKLLEREAFYE----------------------KGLKIKNNDPK 167 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 + E ++ K LS +++ +I M + E +E A + L + Sbjct: 168 FWQEKFNKIKSILSFKDNSYINEIKEKMFKEAETEHFELARDLKLSWEYLKKLNEEQIIE 227 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + +D F+ N+ + F+ G L D + + L F ++Y Sbjct: 228 LKDIHNLDVFAYKTVDNIIYMTILFYRSGLLINKDNQALNIDIDE--IETLEKFFNKYYE 285 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH--- 352 +K P+ IL+ E+ + I PK G+K++++E A +N Sbjct: 286 NKIKPDEILVEEKINNL-------NLNLDENLNIVTPKIGDKKRVLEIAQLNLEEYFSKE 338 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + H +++ + KK K I ++DNS++ + VG +V KN Y Sbjct: 339 HLLIKNKNDHALLMLEEFKKLIKIDSLKNIILFDNSNLANSNPVGVAIVYSNGLKNKNLY 398 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472 RKFN H + + D M+ +++ FS ++ D++I+DGG Sbjct: 399 RKFN-HIDIYSREADVEYMKESIKKYFSSADNKKDF----------------DLIIVDGG 441 Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532 Q+ A+ VL L++ +I I+ + K + + +L F+ Sbjct: 442 LAQIHEAKKVLFDLDI--KIPIVGLVKDDFHRTRALIDLQENLVKI---KNKDLLNFLAS 496 Query: 533 LRDEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 ++ E RFA + R R R L I G+G + LL +F T I + E L Sbjct: 497 MQIEVDRFAKSHLRNRNRITTFEGSLQSIKGLGKCAETKLLNTFKTYVNIFNAPLEELEK 556 Query: 592 IEGISKKIACKIYN 605 + +SKKIA +I Sbjct: 557 V--VSKKIALEIKK 568 >gi|205356265|ref|ZP_03223031.1| excinuclease ABC subunit C [Campylobacter jejuni subsp. jejuni CG8421] gi|205345870|gb|EDZ32507.1| excinuclease ABC subunit C [Campylobacter jejuni subsp. jejuni CG8421] Length = 536 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 160/569 (28%), Positives = 261/569 (45%), Gaps = 48/569 (8%) Query: 51 MISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYK 110 MI + ++ F T +E +AL+LE + IK+L P++NILLRDDK++PYI + + + P Sbjct: 1 MIEETVHLEFIATNSEADALILENSFIKQLHPKYNILLRDDKTYPYIYVDFEEEFPRFEI 60 Query: 111 HRD-SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSG 169 R + YFGPF + +++L + L+ A PC+ +QI RC Sbjct: 61 TRKLVKKSKIKYFGPF--FKGARELLDALYLYYPLKQKASC-----KSPCIFYQISRCLA 113 Query: 170 PCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALS 229 PC IS EKY+E + EA L + L + + + M E+YE A RD++A + Sbjct: 114 PCDKLISREKYLEILDEAIHALLNPSVLL-KNLEKQMLVLAQNENYEEAAKVRDQIAMIK 172 Query: 230 HIQNHNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNR--GTCTFFLKTDSESTNAQ 284 ++ + + F+L ++ G+ + +K D + + Sbjct: 173 DLEVKVEIDIAKLEDFEVFALAFKNSVLSTLRFVVQNGKIISANSKITPIKNDIQWDQNE 232 Query: 285 ILSYFLRQFYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIE 342 I + + ++ I + EE E+ LLE +++ K+ I +PK GEKR+I + Sbjct: 233 IYKQLILENFSMDIPLLANVIYVYEEFEDRVLLEEILSQRFDKKISIKIPKIGEKRRICD 292 Query: 343 QALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVV 402 A NA + + I K+ F L ++P IEI+DNSH+ G + VG MV Sbjct: 293 LAFQNALLNIE--KEQKNHDFTIQKELKFYFELENLPNDIEIFDNSHLQGVANVGAMVTY 350 Query: 403 GENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPS 462 N + K++YRKF+L ++D MR VL R + ++ Sbjct: 351 RINSWNKSKYRKFHLK-----HKNDYDQMREVLTR----------------RALDFDKIP 389 Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEAL 518 PD+ ++DGGK L A+ ++ I IS AK + G + Sbjct: 390 PPDLWLIDGGKALLDLAKEIIVSSGANVDILAISKEKIDAKAHRAKGGAKDKIHSLKGEF 449 Query: 519 VLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA--AYSPLDEINGIGPLRKRLLLQSFG 576 L++ D L F+Q+LRDEAHRFAI+ H+ +KK S L + G+ + LL +G Sbjct: 450 SLSINDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLKSSKLANL-GLSSGVIQKLLAYYG 508 Query: 577 TVKMISRSSPETLASIEGISKKIACKIYN 605 + I ++ + L + G +K A KI Sbjct: 509 NFESIYKADFKDLTMLVG--RKAAQKIKE 535 >gi|323219583|gb|EGA04067.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] Length = 293 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 105/282 (37%), Positives = 163/282 (57%), Gaps = 4/282 (1%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI +I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEVLVAQIQHIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYT 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M +A+ +E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTERQFVSNAG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST 281 + +D + + +AC+ F G+ G+ ++F K + Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTE 291 >gi|195939216|ref|ZP_03084598.1| excinuclease ABC subunit C [Escherichia coli O157:H7 str. EC4024] Length = 285 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 105/276 (38%), Positives = 161/276 (58%), Gaps = 4/276 (1%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239 + V + FLSG + + ++ M A+ ++E A RD++ A+ + Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLK 275 + +D + + +AC+ F G+ G+ ++F K Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPK 285 >gi|330950408|gb|EGH50668.1| excinuclease ABC subunit C [Pseudomonas syringae Cit 7] Length = 336 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 117/352 (33%), Positives = 184/352 (52%), Gaps = 22/352 (6%) Query: 264 GQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENILLSEEAEETSLLEISFF 320 G+ G+ FF + E +++S FL Q++ D+ P ++++ ++ + Sbjct: 2 GRVLGSKNFFPQVGIEEEVGEVMSAFLAQYFLGGIDRELPGEVIVNVINDDFPAFVDAVE 61 Query: 321 KQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPK 380 + G ++ I+ +G + + + A+ NA ++ T +L+ + K L P Sbjct: 62 ELRGVEMVISHRVRGTRARWQQMAVTNAEQALTARLANRQHVASRFEALAKVLGLEDPPM 121 Query: 381 RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFS 440 R+E YD SH G + V VV G G +K+ YR+FN+ V DD A M L RR+S Sbjct: 122 RLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VTAGDDYAAMHQALTRRYS 179 Query: 441 QLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500 ++ E L PDV+++DGGKGQ+S A+ VL +L V + I ++ +AKG Sbjct: 180 RIKAGEGKL--------------PDVLLVDGGKGQMSMARDVLNELQVPDLI-LLGVAKG 224 Query: 501 PKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLD 558 R AG E ++ L P L+ IQ++RDEAHRFAIT HR RR K S L+ Sbjct: 225 TTRKAGFETLYLNDSAHEFTLPGDSPALHLIQQIRDEAHRFAITGHRARRGKTRRTSTLE 284 Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 + G+GP R+R LL+ FG ++ +SR+S + +A GISKK+A IY + H Sbjct: 285 GVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAESIYANLHSE 336 >gi|269114859|ref|YP_003302622.1| UvrABC system protein C (UvrC protein, Excinuclease ABC subunit C) [Mycoplasma hominis] gi|268322484|emb|CAX37219.1| UvrABC system protein C (UvrC protein, Excinuclease ABC subunit C) [Mycoplasma hominis ATCC 23114] Length = 568 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 118/607 (19%), Positives = 223/607 (36%), Gaps = 63/607 (10%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTV 62 + +P PGVY + G ++YVGKA +L+ R+ Y ++ + M +I + + Sbjct: 9 KNVPHKPGVYLWKNKNGNIIYVGKAKDLKNRMLQYFDIKMQNSFKTEKMRQEIADFSTII 68 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILIT-DKHKIPALYKHRDSSTIQGS- 120 +E EA + E +I KP +N+L SFPYI + + S Sbjct: 69 LSSEREAFIEERKLIDFYKPFYNVLFPTRDSFPYIRVKLLSTNKLIIDIKNHYKKEPNSI 128 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 Y+GP + I L + G + S E Sbjct: 129 YYGPIPDNKNFKPLIRY----------------------LNHLLLSKDGIIIEKQSPEFA 166 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI-- 238 + +AK + + K + + +N+A +E A + L L++ + + Sbjct: 167 KQRFEQAKSIMK-FGPDFKRNLKQKINEAIEMNLFEQARFYDQILDLLNYNKQSQNIFIK 225 Query: 239 -YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 +D F Y +N + + G + + + + ++ F+ +FY + Sbjct: 226 TIKDIDVFGFYQYQNYMMVNVMIYKNGSLVNSYDYIFEIILNE--HEFVNQFIDEFYVNN 283 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P I++ + L + + + + IE A N + LS Sbjct: 284 QLPAQIIIP--LKYYELGGFDYNDKVSAPLNKLNKNLIDIA--IENASNNIEQKIKNYLS 339 Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 + I L +RI ++DNS + + V +NG ++ +F Sbjct: 340 KQTKDNEIFNKLCS--YLNVYAERIVLFDNSFLSNTNEVIGAACYFKNGQAFKKFYRFYN 397 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 ++ D M+ L DVVI+DG GQ++ Sbjct: 398 LKLNLLRNADVEYMQQTSFNYLKDL------------------GDQVDVVIVDGSIGQIN 439 Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 + + LN+ I + + K K +K + ++ +D + + R++ E Sbjct: 440 EVKKSMAFLNL--NIPLFGLVKNSKHET--QKLIDSNNNEIKIDDQD-VFNLLSRMQTEV 494 Query: 538 HRFAI-TTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 RFA ++K+RK +PL +I GIG L+ FG+ K I ++S + ++ + + Sbjct: 495 DRFAKYRYNQKQRKSMLSNPLLKIKGIGFKTIEKLINYFGSYKKIQQASFDEISKVA--N 552 Query: 597 KKIACKI 603 KK+A I Sbjct: 553 KKVAKLI 559 >gi|330813706|ref|YP_004357945.1| dihydroneopterin aldolase [Candidatus Pelagibacter sp. IMCC9063] gi|327486801|gb|AEA81206.1| dihydroneopterin aldolase [Candidatus Pelagibacter sp. IMCC9063] Length = 341 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 130/327 (39%), Positives = 191/327 (58%), Gaps = 3/327 (0%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P PG+Y+ LD +++Y+GKA NL KR+++Y S+ R +IS I + Sbjct: 14 KIKNIPNSPGIYKFLDNKNKIIYIGKAKNLPKRLQNYTSSSGLAVRTQRLISSIKELEII 73 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T E EALLLEAN+IK+ KPR+N+LL+DDKSFPYI I P L K R Q Y Sbjct: 74 TTSNESEALLLEANLIKKFKPRYNVLLKDDKSFPYIQIRMSDSWPQLTKFRGKHNDQDLY 133 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPFASV + TI LQ+ F +R C D F++RTRPC+L+QIKRCS PCT EI Y Sbjct: 134 FGPFASVASANWTIKMLQKVFQIRVCDDHTFKNRTRPCMLYQIKRCSAPCTNEIEKINYK 193 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 V FL+G + ++++K ++ M A+ D+E A I RDR+ +L++IQ+ + Sbjct: 194 ISVQNCIDFLNGKSRSIQQKFSKEMEVASKNLDFEKAAIFRDRIKSLTYIQSSQQINKDN 253 Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 D Y + N++CI F+ QN G FF K DSE++ ++++ FL QFY +K Sbjct: 254 FIDADVVVSYRSSNISCIVVFFYRSKQNWGNQCFFPKHDSENSESEVMDAFLAQFYENKI 313 Query: 299 CPENILLSEEAEETSLLEISFFKQYGY 325 P I+L+ + + LL+ + ++ Sbjct: 314 PPRQIVLNIKPKNLDLLQKALERKNKK 340 >gi|225021368|ref|ZP_03710560.1| hypothetical protein CORMATOL_01387 [Corynebacterium matruchotii ATCC 33806] gi|224945750|gb|EEG26959.1| hypothetical protein CORMATOL_01387 [Corynebacterium matruchotii ATCC 33806] Length = 485 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 123/481 (25%), Positives = 209/481 (43%), Gaps = 57/481 (11%) Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + V + FL+G + K+ M A + D+E A RD LAA++ + + Sbjct: 9 HRRIVDDLCAFLAGRTSPITTKLETEMQAAAAELDFERAARIRDNLAAITALTEQQAIVL 68 Query: 240 ---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST--NAQILSYFLRQFY 294 D ++ ++ A IQ G+ +G + ++ + + Q++ FL +FY Sbjct: 69 PDGTDADVIAIDTDELEAAIQLFHIRAGRVKGQRGWVVERTDDHDGGSEQLMQDFLIRFY 128 Query: 295 TDKP--------------------------------CPENILLSEEAEETSLLEISFFKQ 322 +D P IL+ + E + + Sbjct: 129 SDAADQEQTVRDSEEKAIKRRGVDNYVPIDTTATSVVPHEILVEIPPADIPHTEAALSQL 188 Query: 323 YGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE----ISHQMILKDFTKKFALPHI 378 G V+I PK+G+K+ ++ NA + Q + L++ LP Sbjct: 189 RGGPVRIKTPKRGDKKTLMTTVHRNATEALKQHKLKRVGDLTARSAALQELQNSLFLPEA 248 Query: 379 PKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLER 437 P RIE D SHI G V +VV + K+ YR++ + DD A + V R Sbjct: 249 PLRIECTDISHIQGTDVVASLVVFEDGLPKKSDYRRYKITDAAGDGHSDDVASIAEVTRR 308 Query: 438 RF------SQLIKNEENLNFHPKKQEYS--FPSWPDVVILDGGKGQLSAAQGVLKKLNVE 489 RF S+ + + F +K + S F P + I+DGG Q++AAQ VL +L + Sbjct: 309 RFLRHHLDSRTVPELDGSQFEDEKPQTSNKFAYPPQLFIVDGGAPQVAAAQQVLDELGIT 368 Query: 490 NRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR 549 + + +I IAK + E + + L+L L+ IQ +RDEAHRFAIT HR++R Sbjct: 369 D-VPVIGIAKRLE-----EIWVAGEKYPLILPRHSQALFLIQHIRDEAHRFAITFHRQQR 422 Query: 550 K-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 + S LD I G+G R+ L++ FG+VK + ++S + +++G ++A +Y+ H Sbjct: 423 SARMRRSELDNIKGLGAARRTELVKHFGSVKQLRQASVADITAVKGFGPQLAQNVYDALH 482 Query: 609 K 609 Sbjct: 483 P 483 >gi|262366022|gb|ACY62579.1| excinuclease ABC subunit C [Yersinia pestis D182038] Length = 343 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 120/344 (34%), Positives = 187/344 (54%), Gaps = 8/344 (2%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D AG V+YVGKA +L+KR+ SY + + ++ I I TVT TE EALLLE Sbjct: 1 MYDTAGTVIYVGKAKDLKKRLTSYFRAQVANRKTETLVKNIAQIDVTVTHTETEALLLEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK +PR+N+LLRDDKS+P I ++ P L HR + +G YFGPF + AV +T Sbjct: 61 NYIKLYQPRYNVLLRDDKSYPLIFLSADE-HPRLAVHRGAKHEKGEYFGPFPNSYAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193 + LQ+ F +R C +SV+R+R+RPCL +QI RCSGPC +S E+Y V + FLSG Sbjct: 120 LALLQKLFPVRQCENSVYRNRSRPCLQYQIGRCSGPCVEGLVSEEEYQRQVDYVRLFLSG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--DCFSLYHNK 251 + + ++ M +A+ + +E A RD++ A+ + + D + + Sbjct: 180 KDQQVLTQLITRMEEASQQLHFEDAARIRDQIQAVRRVTEQQFVSGDSEDLDVIGVAFDA 239 Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLSE 307 LAC+ F G+ G+ ++F K + + ++++ F+ QFY + P ILL Sbjct: 240 GLACVHVLFIRLGKVLGSRSYFPKVPAGTELSEVVQTFVGQFYLQGSQGRTLPGEILLDF 299 Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 E LL S + G K++I +G++ + ++ A NA + Sbjct: 300 TLTEKDLLASSLSELAGRKIQIQSRPRGDRARYLKLARTNASTA 343 >gi|329121128|ref|ZP_08249759.1| excinuclease ABC subunit C [Dialister micraerophilus DSM 19965] gi|327471290|gb|EGF16744.1| excinuclease ABC subunit C [Dialister micraerophilus DSM 19965] Length = 457 Score = 279 bits (714), Expect = 9e-73, Method: Composition-based stats. Identities = 140/467 (29%), Positives = 230/467 (49%), Gaps = 33/467 (7%) Query: 156 TRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDY 215 TRPCL + I CS PC +S EKY E+V + G ++ + + + M +A+ + Sbjct: 4 TRPCLQYHINLCSAPCCNLVSQEKYNEYVKKLCNIFEGKSYEIIKTLKEKMKEASENLQF 63 Query: 216 ESAIIHRDRLAALSHIQNHNDSIY--NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFF 273 E A ++RD + A+ +Q + + D + +N A + + +G+ G F Sbjct: 64 EKAAMYRDEINAVKSVQQRQNIVSKEGDFDVIGMARTENYAAFEIFYIRYGRMVGKENFN 123 Query: 274 LKTDSESTNAQILSYFLRQFYT--DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITV 331 + + + I++ FL+ FY+ + P+ I++S+ E+ L++ V + V Sbjct: 124 ISGTEDERDESIIAAFLKNFYSSDNINIPKEIIISKIPEDFELIKKWLSGIRHNDVSLIV 183 Query: 332 PKQGEKRKIIEQALINA----HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDN 387 P++G KRK+ E A++NA Q ++ Q L + LP IP+RIE +D Sbjct: 184 PERGFKRKLKEMAIVNATKYLSDKKIQWEHQKMREQGALIKLKEILKLPKIPERIECFDI 243 Query: 388 SHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE 447 SH G G MVV K YRKF L DD M V+ERR++ Sbjct: 244 SHNQGSETTGSMVVFVNGRPEKKAYRKFKLKTTQG-KPDDFKSMAEVMERRYN------- 295 Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507 + PD+++LDGGKGQL+AA +++ +E T+I +AK + Sbjct: 296 ---------DKKIGRNPDLIVLDGGKGQLNAAVPLIRNSGIEA--TVIGLAKRME----- 339 Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRK-RRKKAAYSPLDEINGIGPL 566 E + + E +V++ D +L+ +Q +RDE+HRF I HR+ K+ S LD I GIGP+ Sbjct: 340 EIYLENQTEPIVIDRHDEVLHLLQFVRDESHRFVINYHRQWISKRNRESILDHIEGIGPV 399 Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 R++ L +F T+ + ++S E L ++GI+KK+A IYN F Sbjct: 400 RRKNLWAAFRTLDDMKKASVEELQKVKGINKKVAENIYNFFRMKKDE 446 >gi|120603218|ref|YP_967618.1| excinuclease ABC subunit C [Desulfovibrio vulgaris DP4] gi|120563447|gb|ABM29191.1| Excinuclease ABC subunit C [Desulfovibrio vulgaris DP4] Length = 688 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 104/316 (32%), Positives = 152/316 (48%), Gaps = 5/316 (1%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 +P PGVY D +GR++YVGKA L++R+ SY + T + M+ I Sbjct: 5 DLSTIPLTPGVYLYKDESGRIIYVGKARCLRRRVASYFRDVSALTPKTVAMLRHAVTIDT 64 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE EALLLEA++IK+ +PR+NI+LRDDK + I KH P L R + G Sbjct: 65 LSTTTEKEALLLEASLIKKHRPRYNIVLRDDKQYVLFRIGAKHPYPRLEIVRKARRDDGR 124 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGPF S A +T ++ R F LR C+D F +R R CL + +C GPC E+ SE Y Sbjct: 125 YFGPFTSASAARETWKTIHRAFPLRRCSDRAFGNRVRACLYHHMGQCLGPCVNEVPSETY 184 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + + LSG + L + + M A+ D+E A + RDR+ AL ++ Sbjct: 185 AALLEQVSLLLSGRSGELVDALRTEMEAASQGLDFERAAVLRDRIRALERTVERQAAVLP 244 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-D 296 +D + +N + F G +FF + ++L FL QFY Sbjct: 245 GGGDLDVVGVVEIENGLALGVLFVRQGVLLDGRSFFWPGLGFAEAPELLWSFLGQFYGPQ 304 Query: 297 KPCPENILLSEEAEET 312 P I++ +E Sbjct: 305 ATIPPRIVVPWLPDED 320 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 68/275 (24%), Positives = 111/275 (40%), Gaps = 36/275 (13%) Query: 332 PKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIM 391 P+ + ++++ A+ NA + + + + L P RIE D SH Sbjct: 408 PRNPAENRLVDMAMSNAREE-----ARRKADTPLQDLLARALHLAGPPHRIEAVDVSHTG 462 Query: 392 GCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNF 451 G + MVV + YR + D DD + R Sbjct: 463 GRNTRVGMVVFEDGKPFPEAYRTYAFEDGDG---DDYGTLAAWAGR-------------- 505 Query: 452 HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAK------GPKRSA 505 + S P WPD++++DGG+GQL+A ++ + + SIAK R A Sbjct: 506 ----RVESGPPWPDLLLVDGGRGQLAAVVRAFEECGMGAAFAVASIAKARTEEGRADRRA 561 Query: 506 GM---EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEIN 561 G F + L L P L F+Q +RD H ++I HR+ R A L + Sbjct: 562 GNVSDRIFLPGRANPLPLRAGAPELLFLQHVRDTVHDYSIGKHRRARAGAALTGELQRVE 621 Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 GIGP R L + F +++ ++ + E LA++ G+ Sbjct: 622 GIGPATARALWERFDSLQAMAEAGVEGLAAVPGVG 656 >gi|167465815|ref|ZP_02330904.1| excinuclease ABC subunit C [Paenibacillus larvae subsp. larvae BRL-230010] Length = 378 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 92/341 (26%), Positives = 157/341 (46%), Gaps = 11/341 (3%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M + G ++YVGKA L+ R++SY + H + ++S+I + + VT + Sbjct: 24 LPDQPGCYLMKNKDGVIIYVGKAKVLKNRVRSYFTGS-HDGKTQRLVSEIRDFEYIVTSS 82 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ +PR+N+LL+DDKSFPYI IT + P L R +G YFGP+ Sbjct: 83 NIEALILECNLIKKHRPRYNVLLKDDKSFPYIKIT-HEEHPRLEVTRKIVKDRGKYFGPY 141 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + A ++T L R + LR C R CL + + +C PC +++ E+ E + Sbjct: 142 PNAYAAQETKKLLDRLYPLRKCKHMP----DRVCLYYHMGQCLAPCVYDVTKEQNEEMIQ 197 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 +FL+GG+ +K + M+ A + ++E A RD++A + + Sbjct: 198 GITRFLNGGHEEIKRDLTAKMHAAAEELNFERAKELRDQIAYIEAVMEKQKITMADHVDR 257 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q + G+ + + ++ Q Y+D P Sbjct: 258 DVFGYSTDKGWMCVQILYMRQGKLIERHVSMFPFYGDE--YEDFITYVTQAYSDNPALPK 315 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQ 343 + + + + K Q E E Sbjct: 316 EIFLPLRNKAGEQKAGESHEISGKDSFIEALQKEDEFQKEH 356 >gi|34978695|gb|AAQ83590.1| UvrC [Vibrio fischeri ES114] Length = 298 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 100/288 (34%), Positives = 160/288 (55%), Gaps = 5/288 (1%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M + V+YVGKA +L+KR+ SY SN + + ++S I+ + TV Sbjct: 10 LKSVTHQPGVYRMYNAEADVIYVGKAKDLKKRLSSYFRSNVPSEKTKALVSHIHQVDVTV 69 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E EAL+LE N IK+ P++N+LLRDDKS+PYI I+ +HK P + HR +G YF Sbjct: 70 THSETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFIS-QHKHPRISIHRGVKRKKGEYF 128 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYM 181 GP+ AV ++++ +Q+ F +R C DSV+ +R RPCL+ QI RC PC +S E+Y Sbjct: 129 GPYPDSGAVRESLHLIQKLFPIRQCEDSVYANRHRPCLMHQIGRCLAPCVKGIVSDEEYK 188 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 E + FL G + + + + + M A+ ++E A I RD++ A+ +Q + Sbjct: 189 EQTDFIRLFLQGKDRQVIQTLVKQMESASQSLNFEKAAIIRDQIQAMRRVQEQQYVSDDS 248 Query: 242 MDC---FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQIL 286 D LAC+ G+ G+ +FF K + + ++ Sbjct: 249 GDDLDVLGFAIENGLACVHLLMIRQGKILGSRSFFPKIPANTDKEEVF 296 >gi|308070605|ref|YP_003872210.1| UvrABC system protein C (UvrC protein) [Paenibacillus polymyxa E681] gi|305859884|gb|ADM71672.1| UvrABC system protein C (UvrC protein) [Paenibacillus polymyxa E681] Length = 705 Score = 276 bits (707), Expect = 6e-72, Method: Composition-based stats. Identities = 90/356 (25%), Positives = 160/356 (44%), Gaps = 10/356 (2%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ G Y M + G ++YVGKA L+ R++SY + H + ++S I + + VT + Sbjct: 25 LPDASGCYLMKNSEGTIIYVGKAKVLKNRVRSYFTGS-HNGKTQRLVSDIRDFEYIVTGS 83 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ +PR+N+LL+DDK+FPY+ IT+ P L R + YFGP+ Sbjct: 84 NMEALILECNLIKKYQPRYNVLLKDDKTFPYLKITN-EAHPKLEVTRRVLKDKAKYFGPY 142 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + A +T L R + LR C CL + + +C GPC E+ E Y + Sbjct: 143 PNSYAAHQTKKLLDRMYPLRKCGVMPKE----VCLYYHMHQCLGPCVKEVEKETYDQIGQ 198 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E FLSGG+ +K+ + R M +A + +E A RD++ ++ + + Sbjct: 199 EIGSFLSGGHEEIKKDLQRKMQEAAEELYFERAKELRDQIISIDAMMEKQKITTSDAKDR 258 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q + G+ + +SY + + + P+ Sbjct: 259 DVFGFSVDKGWMCVQILYVRKGKMIERHMSTFPF-YGEAYSDFMSYVTQYYSDNPAVPQE 317 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 ILL + + +++ + + + + + I + Sbjct: 318 ILLPDSPKMMQAEQVNVDQPVAAETALHSAPTADATGQTDDKAIQTEIAPDASNVQ 373 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 85/287 (29%), Positives = 135/287 (47%), Gaps = 27/287 (9%) Query: 332 PKQGEKRKIIEQALINAH----RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDN 387 P++G K+++ A NA E + + L + R+E +DN Sbjct: 440 PQRGLKKQMTGMATENARVALDEKFKLIERDEERTSKAASNLGRAIGLDSL-HRVEAFDN 498 Query: 388 SHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE 447 S+I G V M+V + K +YRK+ + V+ DD MR V+ RR+ +++K Sbjct: 499 SNIQGSDPVSAMIVFIDGKPAKKEYRKYKIRS--VQGPDDYETMREVIRRRYERVLKEN- 555 Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV-LKKLNVENRITIISIAKGPKRSAG 506 PD++++DGG+GQ+ AA V +L + I + + K K Sbjct: 556 -------------LERPDLIVVDGGRGQIKAATDVLQNELGL--FIPVCGLVKDAKHRTS 600 Query: 507 MEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGP 565 + EA+ L Y +QR++DE HRFAIT HR++R K+ S LD I GIG Sbjct: 601 Q-LLVGESSEAVTLARNSEEFYLLQRIQDEVHRFAITFHREQRGKSMVTSRLDSIPGIGE 659 Query: 566 LRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 R++LLL+ FG++K I +S E + I K+A +I + S Sbjct: 660 KRRKLLLKHFGSLKKIREASVEDFRPL-SIGDKLARQIIAALREEES 705 >gi|119370542|sp|Q72DX8|UVRC_DESVH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName: Full=Excinuclease ABC subunit C gi|311233046|gb|ADP85900.1| excinuclease ABC, C subunit [Desulfovibrio vulgaris RCH1] Length = 688 Score = 276 bits (707), Expect = 6e-72, Method: Composition-based stats. Identities = 104/316 (32%), Positives = 152/316 (48%), Gaps = 5/316 (1%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 +P PGVY D +GR++YVGKA L++R+ SY + T + M+ I Sbjct: 5 DLSTIPLTPGVYLYKDESGRIIYVGKARCLRRRVASYFRDVSALTPKTVAMLRHAVTIDT 64 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE EALLLEA++IK+ +PR+NI+LRDDK + I KH P L R + G Sbjct: 65 LSTTTEKEALLLEASLIKKHRPRYNIVLRDDKQYVLFRIGAKHPYPRLEIVRKARRDDGR 124 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGPF S A +T ++ R F LR C+D F +R R CL + +C GPC E+ SE Y Sbjct: 125 YFGPFTSASAARETWKTIHRAFPLRRCSDRAFGNRVRACLYHHMGQCLGPCVNEVPSETY 184 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + + LSG + L + + M A+ D+E A + RDR+ AL ++ Sbjct: 185 AALLEQVSLLLSGRSGELVDALRTEMEAASQGLDFERAAVLRDRIRALERTVERQAAVLP 244 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-D 296 +D + +N + F G +FF + ++L FL QFY Sbjct: 245 GGGDLDVVGVVEVENGLALGVLFVRQGVLLDGRSFFWPGLGFAEAPELLWSFLGQFYGPQ 304 Query: 297 KPCPENILLSEEAEET 312 P I++ +E Sbjct: 305 ATIPPRIVVPWLPDED 320 Score = 157 bits (398), Expect = 4e-36, Method: Composition-based stats. Identities = 68/275 (24%), Positives = 111/275 (40%), Gaps = 36/275 (13%) Query: 332 PKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIM 391 P+ + ++++ A+ NA + + + + L P RIE D SH Sbjct: 408 PRNPAENRLVDMAMSNAREE-----ARRKADTPLQDLLARALHLAGPPHRIEAVDVSHTG 462 Query: 392 GCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNF 451 G + MVV + YR + D DD + R Sbjct: 463 GRNTRVGMVVFEDGKPFPEAYRTYAFEDGDG---DDYGTLAAWAGR-------------- 505 Query: 452 HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAK------GPKRSA 505 + S P WPD++++DGG+GQL+A ++ + + SIAK R A Sbjct: 506 ----RVESGPPWPDLLLVDGGRGQLAAVVRAFEECGMGAAFAVASIAKARTEEGRADRRA 561 Query: 506 GM---EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEIN 561 G F + L L P L F+Q +RD H ++I HR+ R A L + Sbjct: 562 GNVSDRIFLPGRANPLPLRAGAPELLFLQHVRDTVHDYSIGKHRRARAGAALTGELQRVE 621 Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 GIGP R L + F +++ ++ + E LA++ G+ Sbjct: 622 GIGPATARALWERFDSLQAMADAGVEGLAAVPGVG 656 >gi|46579214|ref|YP_010022.1| excinuclease ABC subunit C [Desulfovibrio vulgaris str. Hildenborough] gi|46448627|gb|AAS95281.1| excinuclease ABC, C subunit [Desulfovibrio vulgaris str. Hildenborough] Length = 702 Score = 276 bits (707), Expect = 6e-72, Method: Composition-based stats. Identities = 104/316 (32%), Positives = 152/316 (48%), Gaps = 5/316 (1%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 +P PGVY D +GR++YVGKA L++R+ SY + T + M+ I Sbjct: 19 DLSTIPLTPGVYLYKDESGRIIYVGKARCLRRRVASYFRDVSALTPKTVAMLRHAVTIDT 78 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE EALLLEA++IK+ +PR+NI+LRDDK + I KH P L R + G Sbjct: 79 LSTTTEKEALLLEASLIKKHRPRYNIVLRDDKQYVLFRIGAKHPYPRLEIVRKARRDDGR 138 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGPF S A +T ++ R F LR C+D F +R R CL + +C GPC E+ SE Y Sbjct: 139 YFGPFTSASAARETWKTIHRAFPLRRCSDRAFGNRVRACLYHHMGQCLGPCVNEVPSETY 198 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + + LSG + L + + M A+ D+E A + RDR+ AL ++ Sbjct: 199 AALLEQVSLLLSGRSGELVDALRTEMEAASQGLDFERAAVLRDRIRALERTVERQAAVLP 258 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-D 296 +D + +N + F G +FF + ++L FL QFY Sbjct: 259 GGGDLDVVGVVEVENGLALGVLFVRQGVLLDGRSFFWPGLGFAEAPELLWSFLGQFYGPQ 318 Query: 297 KPCPENILLSEEAEET 312 P I++ +E Sbjct: 319 ATIPPRIVVPWLPDED 334 Score = 157 bits (398), Expect = 4e-36, Method: Composition-based stats. Identities = 68/275 (24%), Positives = 111/275 (40%), Gaps = 36/275 (13%) Query: 332 PKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIM 391 P+ + ++++ A+ NA + + + + L P RIE D SH Sbjct: 422 PRNPAENRLVDMAMSNAREE-----ARRKADTPLQDLLARALHLAGPPHRIEAVDVSHTG 476 Query: 392 GCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNF 451 G + MVV + YR + D DD + R Sbjct: 477 GRNTRVGMVVFEDGKPFPEAYRTYAFEDGDG---DDYGTLAAWAGR-------------- 519 Query: 452 HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAK------GPKRSA 505 + S P WPD++++DGG+GQL+A ++ + + SIAK R A Sbjct: 520 ----RVESGPPWPDLLLVDGGRGQLAAVVRAFEECGMGAAFAVASIAKARTEEGRADRRA 575 Query: 506 GM---EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEIN 561 G F + L L P L F+Q +RD H ++I HR+ R A L + Sbjct: 576 GNVSDRIFLPGRANPLPLRAGAPELLFLQHVRDTVHDYSIGKHRRARAGAALTGELQRVE 635 Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 GIGP R L + F +++ ++ + E LA++ G+ Sbjct: 636 GIGPATARALWERFDSLQAMADAGVEGLAAVPGVG 670 >gi|310643790|ref|YP_003948548.1| excinuclease abc, c subunit [Paenibacillus polymyxa SC2] gi|309248740|gb|ADO58307.1| Excinuclease ABC, C subunit [Paenibacillus polymyxa SC2] Length = 696 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 90/342 (26%), Positives = 158/342 (46%), Gaps = 10/342 (2%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ G Y M + G ++YVGKA L+ R++SY + H + +++ I + + VT + Sbjct: 25 LPDASGCYLMKNSEGTIIYVGKAKVLKNRVRSYFTGS-HNGKTQRLVADIRDFEYIVTGS 83 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EAL+LE N+IK+ +PR+N+LL+DDK+FPY+ IT+ P L R + YFGP+ Sbjct: 84 NMEALILECNLIKKHQPRYNVLLKDDKTFPYLKITN-EAHPKLEVTRRVLKDKAKYFGPY 142 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + A +T L R + LR C CL + + +C GPC E+ E Y + Sbjct: 143 PNSYAAHQTKKLLDRMYPLRKCGVMPKE----VCLYYHMHQCLGPCVKEVEKETYDQISQ 198 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 E FLSGG+ +K+ + R M +A + +E A RD++ ++ + + Sbjct: 199 EIGSFLSGGHEEIKKDLQRKMQEAAEELYFERAKELRDQIISIDAMMEKQKITTSDAKDR 258 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F +K C+Q + G+ + +SY + + + P+ Sbjct: 259 DVFGFSVDKGWMCVQILYVRKGKMIERHMSTFPF-YGEAYSDFMSYVTQYYSDNPAVPQE 317 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344 ILL + + + + ++ E I ++ Sbjct: 318 ILLPDSPKLMKAKSADVDQPIATETELYSATTAETTGITDEE 359 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 87/287 (30%), Positives = 137/287 (47%), Gaps = 27/287 (9%) Query: 332 PKQGEKRKIIEQALINAH----RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDN 387 P++G K+++ A NA E + + L + R+E +DN Sbjct: 431 PQRGLKKQMTGMATENARVALDEKFKLIERDEERTSKAASNLGRAIGLDSL-HRVEAFDN 489 Query: 388 SHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE 447 S+I G V M+V + K +YRK+ + V+ DD MR V+ RR+ +++K Sbjct: 490 SNIQGSDPVSAMIVFIDGKPAKKEYRKYKIRS--VQGPDDYETMREVIRRRYERVLKEN- 546 Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK-KLNVENRITIISIAKGPKRSAG 506 PD++I+DGG+GQ+ AA VL+ +L + I + + K K Sbjct: 547 -------------LERPDLIIVDGGRGQIKAATDVLENELGL--FIPVCGLVKDAKHRTS 591 Query: 507 MEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGP 565 + EA+ L Y +QR++DE HRFAIT HR++R K+ S LD I GIG Sbjct: 592 Q-LLMGETFEAVTLARNSEEFYLLQRIQDEVHRFAITFHREQRGKSMVTSQLDSIPGIGE 650 Query: 566 LRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 R++LLL+ FG++K I +S E + I K+A +I + S Sbjct: 651 KRRKLLLKHFGSLKKIREASVEDFRPL-SIGDKLARQIIAALREEES 696 >gi|121591798|ref|ZP_01678992.1| excinuclease ABC, subunit C [Vibrio cholerae 2740-80] gi|121546340|gb|EAX56609.1| excinuclease ABC, subunit C [Vibrio cholerae 2740-80] Length = 396 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 121/413 (29%), Positives = 198/413 (47%), Gaps = 29/413 (7%) Query: 208 QATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHNKNLACIQTCFFHFG 264 QA+ + +E A RD++ A+ +Q + +D +ACI G Sbjct: 2 QASRELRFEDAAKARDQIQAIRRVQEQQFVSDDSLEDLDVLGFAQENGIACIHILMIRQG 61 Query: 265 QNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSEEA-EETSLLEISF 319 + G+ + F K S+++ ++ FL Q+Y + P I+L+ EET L+I+ Sbjct: 62 KVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHSEARSIPARIILNRGLTEETEALQIAI 121 Query: 320 FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP 379 + G KV V G + + ++ A NA + T K++ +++ K ++ + I Sbjct: 122 SELAGRKVTFHVNPTGTRGRYLKLANTNALTAITTKMNHKMTISQRFKALQEELGMDAIT 181 Query: 380 KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRF 439 R+E +D SH MG S + VV + G +K +YR++N+ + DD A M VLERR+ Sbjct: 182 -RMECFDISHTMGESTMASCVVFNQEGPLKQEYRRYNI--TGITGGDDYAAMAQVLERRY 238 Query: 440 SQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL--NVENRITIISI 497 S+ + PD++ +DGGKGQL+ A ++ + II I Sbjct: 239 SKQLD---------------SSKIPDIIFIDGGKGQLNRAYEIISSCWQDWPKYPKIIGI 283 Query: 498 AKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SP 556 AKG R G+E G+ L P L+ IQ +RDE+H AI HR +R K S Sbjct: 284 AKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQHIRDESHNHAIAGHRAQRGKTRRTST 343 Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L+ I G+GP R++ LL+ G ++ + R+S E +A + GIS +A IY + Sbjct: 344 LEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPGISHALAENIYQALKQ 396 >gi|218887930|ref|YP_002437251.1| excinuclease ABC subunit C [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758884|gb|ACL09783.1| excinuclease ABC, C subunit [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 762 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 98/321 (30%), Positives = 142/321 (44%), Gaps = 9/321 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH------SNNHTHRITHMISQINNI 58 +P+ PGVY D AGR+LYVGKA +L+KRI SY T + M+ Q + Sbjct: 8 NIPDTPGVYLYKDAAGRILYVGKAKHLRKRIASYFREAAEGAPPPQTPKTLAMLRQAERL 67 Query: 59 RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118 T TE EALLLEA++IK+ +PR+NI+LRDDK + + KH P L R Sbjct: 68 DTLSTTTEKEALLLEASLIKKHRPRYNIVLRDDKQYVLFRLQKKHPYPRLDIVRAVRRDG 127 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 Y+GPF S A T ++ R F LR C D +R RPCL I +C PC ++ E Sbjct: 128 AQYYGPFTSAGAARATWKAIHRAFPLRRCTDRALENRVRPCLYHFIGQCLAPCVFDVPRE 187 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y V + LSG + L ++ M A+ ++E A RD++ A+ ++ Sbjct: 188 EYAALVQRVEMLLSGRSGELVGQLRTEMETASEALEFERAAALRDQIRAVERTVERQAAV 247 Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 +D + + F G F ++L FL QFY Sbjct: 248 LPGGGDLDVVGIVDTGGGLGLGVLFVRQGAVLDGRAFLWPGLGFEEAPELLLSFLGQFYG 307 Query: 296 DKPCPENILLSEEAEETSLLE 316 + ++ T E Sbjct: 308 PHSAIPSRIVVPWLPVTEGTE 328 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 85/363 (23%), Positives = 138/363 (38%), Gaps = 52/363 (14%) Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354 + P P +E + G V+I P+ E+ ++++ A NA Sbjct: 405 SSAPIPPQAATDMSL---RAIEETLADLRGGPVRIVAPRSPEENRLVDMAAANAREH--- 458 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + + + + L +R+E D SH G S MVV + V++ +R Sbjct: 459 --ARRETEAPLPDLLARALHLSAPVRRVEAVDISHTGGRSTRAGMVVFEDGRPVRDAWRA 516 Query: 415 FNLH------PNDVKTQDDCAMMRMVLERRFSQLIKNE---------------------- 446 + L + T + + F+ L + E Sbjct: 517 YALDRPADGSADLPDTNAPNGLSDGPPDGVFADLPEGEMAGHAGEVSETSAEHTSQPPTF 576 Query: 447 ------ENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAK- 499 L +++ S P W D+V++DGG+GQLSA +++ E + SIAK Sbjct: 577 TAGDDYAALAGWARRRIASGPPWADLVLIDGGRGQLSAVHRAVREAGGEGLFALASIAKA 636 Query: 500 -----GPKRSAGM---EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK 551 R AG F + L L P L F+Q +RD H FAI HR+ R Sbjct: 637 RTEDGRADRRAGNVADRIFLPGRTNPLPLRDGAPELLFLQHVRDAVHDFAIGRHRRARAG 696 Query: 552 A-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 A L + G+GP RLL FGT+ + +S + LA + GI + A +I+ + Sbjct: 697 AALTGELQRVEGVGPKTARLLWDRFGTLAAMRAASEKELAEVPGIGPRRARQIHQRLKEM 756 Query: 611 TSH 613 + Sbjct: 757 DTS 759 >gi|121535496|ref|ZP_01667305.1| excinuclease ABC, C subunit domain protein [Thermosinus carboxydivorans Nor1] gi|121305915|gb|EAX46848.1| excinuclease ABC, C subunit domain protein [Thermosinus carboxydivorans Nor1] Length = 352 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 105/349 (30%), Positives = 167/349 (47%), Gaps = 29/349 (8%) Query: 271 TFFLKTDSESTNAQILSYFLRQFYTDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKI 329 TF L + +A++L+ F++Q+Y+ P ILL E LL G +V++ Sbjct: 27 TFLLTGSDDEDDAEVLAAFMKQYYSQATFIPREILLPLALAEQDLLADWLTSIKGSRVEV 86 Query: 330 TVPKQGEKRKIIEQALINA----HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIY 385 P++G K+ ++ A NA + ++ + + + + L P+RIE + Sbjct: 87 ATPQRGTKKDLVTMAADNAATVLEEQAAKIQASADATAGAVLELGEYLDLASPPERIECF 146 Query: 386 DNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN 445 D SHI G V MVV K+ YR++ L DD M+ V+ RR+ + Sbjct: 147 DISHIQGAETVASMVVFEGGRPKKDDYRRYKLRT-VEGKPDDFKSMQEVVGRRYRDAAQ- 204 Query: 446 EENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSA 505 PD++I+DGGKGQLSAA V++ L + + I ++ +AK + Sbjct: 205 ---------------GPLPDLIIIDGGKGQLSAALEVIRGLGLHD-IPVVGLAKEFEH-- 246 Query: 506 GMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIG 564 F + + ++L LY +QR+RDEAHRFAIT HRK R K S LD I GIG Sbjct: 247 ---IFREGESDPVILPRHSQALYLVQRIRDEAHRFAITYHRKLRSKRNMVSVLDHIPGIG 303 Query: 565 PLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 R++ L FG++ I + E LA++ G+++ A +Y F + Sbjct: 304 AKRRKALWDHFGSLAKIKAAEVEELAAVPGMTRPAAEAVYQFFRRKPGE 352 >gi|294786903|ref|ZP_06752157.1| excinuclease ABC subunit C [Parascardovia denticolens F0305] gi|294485736|gb|EFG33370.1| excinuclease ABC subunit C [Parascardovia denticolens F0305] Length = 790 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 98/303 (32%), Positives = 162/303 (53%), Gaps = 8/303 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 +P PGVY+ D GRV+YVGKA NL+ R+ +Y +N R +M+ ++ + Sbjct: 112 KPSDIPTQPGVYKWRDGQGRVIYVGKAKNLRNRLSNYFQPLHNLHPRTQNMVLTARSLEW 171 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TE+E+L LE IK PRFN++ RDDK++PY+ I+ + P ++ R+ + Sbjct: 172 TVVATELESLTLEYTWIKEFDPRFNVVFRDDKTYPYLAISLSEEFPRIWVTRNRNKRGTR 231 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP+ V + T++SL + +R+CA S F RPCLL I +CS PC G IS+ Sbjct: 232 YFGPYPKVWNMRHTLDSLLHAYPVRTCAPSTFHKAQVTGRPCLLAYIGKCSAPCVGWISA 291 Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 E + + L+G + + M +A+ K D+E A RD+++ALS + N Sbjct: 292 EDHRAMCEQLVGILTGRLGRTYADFLKEEMLEASRKLDFEKAARLRDQISALSSVLEQNS 351 Query: 237 SIYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 +++ D F L ++ A + F G RG ++ ++ + ++AQ+++ + Q Sbjct: 352 VVFDADVDADIFGLASDELEASVHCFFVRAGTIRGERSWSVERVEDVSDAQLIADLISQV 411 Query: 294 YTD 296 Y+D Sbjct: 412 YSD 414 Score = 263 bits (671), Expect = 9e-68, Method: Composition-based stats. Identities = 98/320 (30%), Positives = 163/320 (50%), Gaps = 14/320 (4%) Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P P +++ E + + LE G V I V +GEKR+++E+A NA +S ++ Sbjct: 474 SPVPREVIIPWEPDRKADLEEWLTGLRGSVVTIRVAARGEKRELMERASQNAQQSFSRLK 533 Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIMGC-SAVGCMVVVGENGFVKNQ 411 ++ ++ L + + L P RIE YD S+ G V MVV + K + Sbjct: 534 ASRMTDIGLRTQALNEIAQTLGLKEAPLRIEAYDISNASGGGYQVASMVVFEDGAPKKKE 593 Query: 412 YRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YR F++ D + DD + + L RRF+ E + + + F P ++++D Sbjct: 594 YRHFSIRGADGEGAVDDLSALYETLTRRFNHDKAGGEEPSPEAQSRPR-FAYRPSLIVVD 652 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GG+ Q+ AA L L +++ I + +AK + E + +++ + LY + Sbjct: 653 GGQPQVKAAARALADLGIDD-IAVCGLAKKLE-----EIWLPDDDYPVIMKRQSEGLYLM 706 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 QR+RDE+HRFAIT HRK+R K + S LD+I+G+G +R LL FG++K I +S + L Sbjct: 707 QRVRDESHRFAITYHRKKRSKGSLRSALDDIDGVGLSYQRKLLNHFGSLKAIKAASLDDL 766 Query: 590 ASIEGISKKIACKIYNHFHK 609 ++GI K A IY+ H+ Sbjct: 767 QEVKGIGKAKASAIYSSLHQ 786 >gi|315226538|ref|ZP_07868326.1| excision endonuclease subunit UvrC [Parascardovia denticolens DSM 10105] gi|315120670|gb|EFT83802.1| excision endonuclease subunit UvrC [Parascardovia denticolens DSM 10105] Length = 728 Score = 273 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 98/303 (32%), Positives = 162/303 (53%), Gaps = 8/303 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 +P PGVY+ D GRV+YVGKA NL+ R+ +Y +N R +M+ ++ + Sbjct: 50 KPSDIPTQPGVYKWRDGQGRVIYVGKAKNLRNRLSNYFQPLHNLHPRTQNMVLTARSLEW 109 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TE+E+L LE IK PRFN++ RDDK++PY+ I+ + P ++ R+ + Sbjct: 110 TVVATELESLTLEYTWIKEFDPRFNVVFRDDKTYPYLAISLSEEFPRIWVTRNRNKRGTR 169 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP+ V + T++SL + +R+CA S F RPCLL I +CS PC G IS+ Sbjct: 170 YFGPYPKVWNMRHTLDSLLHAYPVRTCAPSTFHKAQVTGRPCLLAYIGKCSAPCVGWISA 229 Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 E + + L+G + + M +A+ K D+E A RD+++ALS + N Sbjct: 230 EDHRAMCEQLVGILTGRLGRTYADFLKEEMLEASRKLDFEKAARLRDQISALSSVLEQNS 289 Query: 237 SIYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 +++ D F L ++ A + F G RG ++ ++ + ++AQ+++ + Q Sbjct: 290 VVFDADVDADIFGLASDELEASVHCFFVRAGTIRGERSWSVERVEDVSDAQLIADLISQV 349 Query: 294 YTD 296 Y+D Sbjct: 350 YSD 352 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 98/320 (30%), Positives = 163/320 (50%), Gaps = 14/320 (4%) Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P P +++ E + + LE G V I V +GEKR+++E+A NA +S ++ Sbjct: 412 SPVPREVIIPWEPDRKADLEEWLTGLRGSVVTIRVAARGEKRELMERASQNAQQSFSRLK 471 Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIMGC-SAVGCMVVVGENGFVKNQ 411 ++ ++ L + + L P RIE YD S+ G V MVV + K + Sbjct: 472 ASRMTDIGLRTQALNEIAQTLGLKEAPLRIEAYDISNASGGGYQVASMVVFEDGAPKKKE 531 Query: 412 YRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 YR F++ D + DD + + L RRF+ E + + + F P ++++D Sbjct: 532 YRHFSIRGADGEGAVDDLSALYETLTRRFNHDKAGGEEPSPEAQSRPR-FAYRPSLIVVD 590 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 GG+ Q+ AA L L +++ I + +AK + E + +++ + LY + Sbjct: 591 GGQPQVKAAARALADLGIDD-IAVCGLAKKLE-----EIWLPDDDYPVIMKRQSEGLYLM 644 Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 QR+RDE+HRFAIT HRK+R K + S LD+I+G+G +R LL FG++K I +S + L Sbjct: 645 QRVRDESHRFAITYHRKKRSKGSLRSALDDIDGVGLSYQRKLLNHFGSLKAIKAASLDDL 704 Query: 590 ASIEGISKKIACKIYNHFHK 609 ++GI K A IY+ H+ Sbjct: 705 QEVKGIGKAKASAIYSSLHQ 724 >gi|111223984|ref|YP_714778.1| excinuclease ABC subunit C [Frankia alni ACN14a] gi|111151516|emb|CAJ63235.1| DNA excision repair enzyme UvrABC; UvrC subunit [Frankia alni ACN14a] Length = 802 Score = 273 bits (697), Expect = 8e-71, Method: Composition-based stats. Identities = 103/299 (34%), Positives = 148/299 (49%), Gaps = 7/299 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVT 63 +PE PGVY+ D GRVLYVGKA NL+ R+ +Y + R HM+ + + +TV Sbjct: 13 SIPETPGVYRFRDEHGRVLYVGKAKNLRARLANYFADLHTLHPRTQHMVQAASAVDWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE IK PRFN+ RDDKS+P + +T + P L R YFG Sbjct: 73 STEVEALQLEYTWIKEFDPRFNVRYRDDKSYPSLAVTLHEEFPRLQVMRGPKRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P+A A+ +T++ L R F R+C+ VF+ RPCLL I RCS PC G + +E + Sbjct: 133 PYAHAWAIRETLDLLLRVFPARTCSAGVFKRAGQVGRPCLLGYIDRCSAPCVGRVDAETH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 E V + F+SG ++ + M QA ++YE A RD AL + Sbjct: 193 REIVDDFCDFMSGQTGRYLRRLEQEMQQAASAQEYERAARLRDDAGALRRAIEKQAVVLP 252 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 D + ++ A + + G+ RG + + E T A ++ FL Q Y + Sbjct: 253 DGTDADVVAFAEDELEAAVAIFYVRAGRVRGQRGWVVDKLDEVTTADLVEQFLTQEYLE 311 Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats. Identities = 98/374 (26%), Positives = 158/374 (42%), Gaps = 57/374 (15%) Query: 286 LSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQAL 345 + R P IL+ + + G +V+I VP++G+KR ++E Sbjct: 370 PARAPRSDPQGAGIPREILVPALPPDADAVAELLGVARGGRVEIRVPRRGDKRTLLETVE 429 Query: 346 INAHRSHTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVV 401 NA ++ + S L + + LP P RIE YD S+I G + V MVV Sbjct: 430 RNARQALALHRTKRASDLTARSRALAELQEALELPDAPLRIECYDVSNIQGTNVVASMVV 489 Query: 402 VGENGFVKNQYRKFNL----------HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNF 451 + K++YR+F++ H QDD A M + RRFS+ + Sbjct: 490 FEDGLARKSEYRRFSIRGGAGGAGREHGRADAGQDDVASMYETIHRRFSRYLAERSRTGE 549 Query: 452 ----------------------------------HPKKQEYSFPSWPDVVILDGGKGQLS 477 + F P++V++DGG Q++ Sbjct: 550 LVDIVDSAEDLAADTGVRDGRGRAVTPGAAQPIDPDTGRPRRFAYPPNLVVVDGGPPQVA 609 Query: 478 AAQGVLKKLNVE---NRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 AA L +L ++ + + +AK + E + E ++L LY +QR+R Sbjct: 610 AAARALDELGIDTGPGGVALCGLAKRLE-----EVWLPDSAEPVILPRTSEALYLLQRVR 664 Query: 535 DEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DEAHRFAIT HR++R A S LD++ G+G R++ LL+ FG+V + +S E +A + Sbjct: 665 DEAHRFAITYHRQKRSAAMVTSALDDVPGLGETRRKALLRQFGSVAKVRAASAEEIAQVP 724 Query: 594 GISKKIACKIYNHF 607 GI + A I Sbjct: 725 GIGPRTAAAILTAL 738 >gi|289677231|ref|ZP_06498121.1| excinuclease ABC subunit C [Pseudomonas syringae pv. syringae FF5] Length = 262 Score = 273 bits (697), Expect = 8e-71, Method: Composition-based stats. Identities = 103/263 (39%), Positives = 152/263 (57%), Gaps = 3/263 (1%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D +LYVGKA NL+KR+ SY H + ++S+I I T+T E EALLLE Sbjct: 1 MFDAEATLLYVGKAKNLKKRLASYFRKTGHAPKTGALVSRIAQIETTITGNETEALLLEQ 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 +IK +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S A+ ++ Sbjct: 61 TLIKEWRPPYNILLRDDKSYPYVFLSDN-AFPRLSIHRGTKKAKGRYFGPYPSAGAIRES 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194 ++ LQ+TF +R C DS F++RTRPCL +QIKRC GPC G + E Y E V + FL G Sbjct: 120 LSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSVMFLEGR 179 Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFSLYHNKN 252 ++ L +++ +M +A + D+E A RD++A L +Q+ +D + + N Sbjct: 180 SNALSDELNASMEKAAMALDFERAAELRDQVALLRRVQDQQSMDGGTGDVDVVAAFVNPG 239 Query: 253 LACIQTCFFHFGQNRGTCTFFLK 275 AC+ G+ G+ FF Sbjct: 240 GACVHLISVRGGRVLGSKNFFPP 262 >gi|269967058|ref|ZP_06181126.1| excinuclease ABC subunit C [Vibrio alginolyticus 40B] gi|269828317|gb|EEZ82583.1| excinuclease ABC subunit C [Vibrio alginolyticus 40B] Length = 397 Score = 273 bits (697), Expect = 9e-71, Method: Composition-based stats. Identities = 117/415 (28%), Positives = 195/415 (46%), Gaps = 29/415 (6%) Query: 206 MNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCF---SLYHNKNLACIQTCFFH 262 M A+ + +E A RD++ A+ +Q + MD +ACI Sbjct: 1 MEVASQQLRFEDAAKFRDQIQAIRRVQEQQYVSEDSMDDMDVLGFAQENGIACIHILMIR 60 Query: 263 FGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP----CPENILLSEEA-EETSLLEI 317 G+ G+ + F K ++ ++ FL Q+Y P I+L++E E+ + ++ Sbjct: 61 QGKVLGSRSHFPKIPQNTSQQEVFDSFLTQYYLSHNEARTIPSRIILNQELAEDIAPIQK 120 Query: 318 SFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPH 377 + + G KV G + + ++ + NA + T K++ +++ + L Sbjct: 121 ALSEVAGRKVHFHTSPTGSRARYLKLSNTNALTAITTKINHKMTINQRFHALRETLELES 180 Query: 378 IPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLER 437 I R+E +D SH MG S + VV G VK +YR++N+ + DD A M LER Sbjct: 181 IA-RMECFDISHTMGESTIASCVVFNSEGPVKQEYRRYNI--TGITGGDDYAAMGQALER 237 Query: 438 RFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL--NVENRITII 495 R+S+ + E+ PD++ +DGGKGQL+ A ++ + + R +I Sbjct: 238 RYSKQLDVEK---------------IPDIIFIDGGKGQLNRAHDIISQYWGDWPKRPIMI 282 Query: 496 SIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY- 554 IAKG R G+E G+ L P L+ IQ +RDE+H AI HR +R K Sbjct: 283 GIAKGVTRKPGLETLITVDGDEFHLPSDAPALHLIQHIRDESHNHAIAGHRAKRGKTRRT 342 Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 S L+ I GIGP R++ LL+ G ++ + R+S E +A + GIS +A I+ + Sbjct: 343 SALEGIEGIGPKRRQALLKYMGGLQELKRASVEEIAKVPGISHSLAEIIFQALKQ 397 >gi|71894293|ref|YP_278401.1| excinuclease ABC subunit C [Mycoplasma synoviae 53] gi|71851081|gb|AAZ43690.1| excinuclease ABC subunit C [Mycoplasma synoviae 53] Length = 582 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 127/618 (20%), Positives = 236/618 (38%), Gaps = 65/618 (10%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P+ PG Y D V+YVGKA NL R+ SY N ++ + M I + + + Sbjct: 11 LKNIPKKPGTYLWKDQFDNVIYVGKANNLHNRMNSYFKGNINSFKTYAMFENIYSFDYFI 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSY 121 + AL+LE I + +P++NI+L DDK +PY+ I K + +R S + Y Sbjct: 71 ADSPKAALILEKKYIDQYRPKYNIMLLDDKQYPYLNIKIKDSLEIKQTYRVSKNSEFNIY 130 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GP+ + L G + ++ Sbjct: 131 YGPYPQSHLFKFVKI-----------------------LQRIFLYNQGLLIKDKPKMYWI 167 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 E + K+ L N++ + M A ++E+AI ++ L +S + ++ Sbjct: 168 EKFNILKEILKFKNNDFNNLLKEKMIAAADNLNFEAAIEYQKALEFISQFKEKQIIEISK 227 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQI-LSYFLRQFYTDKPCP 300 + ++ + F+ F K + + +S FL++FY +K P Sbjct: 228 YKNYDVFSFEEKNESIAIFYMLYIYGVQNIFQRKIIENYDSLENIISNFLKEFYKNKALP 287 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST-- 358 +NI+L + ++ +L K I P++G +I+ A N + + L+ Sbjct: 288 DNIILDYKYKDLNLDLDFKSK-------IIFPQKGINHDLIKLANENNNSGYESYLNQKI 340 Query: 359 --EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 E + K+ + L I I+DNSH + +G + + + Y FN Sbjct: 341 ILEQHKLNLWKNLASELFLD-KLNSIFIFDNSHFNNSNPIGSCICYTKAEKNPHLYASFN 399 Query: 417 --LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 ++K + D M + + + + F + D+ ILDG Sbjct: 400 HEKEQKELKIKSDIEYMYHSVYKYLKR---------------NHLFITKDDIFILDGSSM 444 Query: 475 QLSAAQGVLKKLNVENR----ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530 Q+ AQ + N + I + + K + + + + + F+ Sbjct: 445 QIKFAQKAILDFNKDFNANLEIKLFGLVKDKNHKTN---LMINSKDEI-IKISSESFLFL 500 Query: 531 QRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 ++++E FA +K + S L +I GI + LL+ FGT I +S E L Sbjct: 501 SKIQEEVDLFAKKRMQKNQINLTFKSRLIQIKGISYKTEEKLLKHFGTFANIYNASFEEL 560 Query: 590 ASIEGISKKIACKIYNHF 607 + +K IA KI + Sbjct: 561 QKVT--NKSIAQKIKENL 576 >gi|312198682|ref|YP_004018743.1| excinuclease ABC, C subunit [Frankia sp. EuI1c] gi|311230018|gb|ADP82873.1| excinuclease ABC, C subunit [Frankia sp. EuI1c] Length = 835 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 99/300 (33%), Positives = 149/300 (49%), Gaps = 7/300 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVT 63 +PE PGVY+ D GRVLYVGKA NL+ R+ +Y R M++ +++ +TV Sbjct: 13 SIPETPGVYRFRDPHGRVLYVGKAKNLRARLNNYFTDVFALHPRTRTMVTTASSVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE IK PRFN+ RDDKS+P + +T + + P L R YFG Sbjct: 73 STEVEALALEYTWIKEYDPRFNVRYRDDKSYPSLAVTLQEEFPRLQVMRGPKRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P+A A+ +T++ L R F R+C+ VF+ RPCLL I RCS PC G ++ +++ Sbjct: 133 PYAHAWAIRETLDLLLRVFPARTCSTGVFKRAGQVGRPCLLGYIDRCSAPCVGRVTPDEH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + V + F++G ++ M A +DYE A RD AL + Sbjct: 193 RQIVDDFCDFMAGQTGRFLRRLEDEMRAAADAQDYERAARLRDDAGALRRAMEKQAVVLA 252 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D + ++ A +Q + G+ RG + + ++ T A ++ FL Q Y Sbjct: 253 DGTDADVVAFAQDELEAAVQVFYVRGGRVRGQRGWVVDKLADVTTADLVEQFLTQEYLGD 312 Score = 245 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 90/344 (26%), Positives = 154/344 (44%), Gaps = 45/344 (13%) Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P +L+ E + + + G +V++ VP++G+KR ++E NA ++ Sbjct: 371 HADIPREVLVPELPTDADAVGELLARYRGGRVEVRVPQRGDKRTLMETVERNAKQALVLH 430 Query: 356 LSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 + S + L + + L P RIE +D SH G V MVV + K++ Sbjct: 431 RTKRASDLTARSLALAELQETLGLAEAPLRIECFDVSHTQGQDVVASMVVFEDGVARKSE 490 Query: 412 YRKFNLHP---NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP--------------- 453 YR+F + D QDD A M + RRFS+ + P Sbjct: 491 YRRFTIRGAARRDGNEQDDTASMYETVSRRFSRYLAELSRTGELPGTDQDAPADGSAGAA 550 Query: 454 --------------KKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE---NRITIIS 496 + F P++V++DGG Q++AA L L ++ + + Sbjct: 551 AGAEGTDGPEPLVVDGRPRRFAYPPNLVVVDGGPPQVAAAARALADLGIDAGPGGVALCG 610 Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556 +AK + E + + ++L LY +QR+RDEAHRFAIT HR++R + S Sbjct: 611 LAKRLE-----EVWLPDDPDPVILPRTSEALYLLQRVRDEAHRFAITFHRQKRSASMTSS 665 Query: 557 -LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 LD + G+G R++ LL++FG+V + +S E ++++ GI + Sbjct: 666 LLDGVPGLGETRRKALLKTFGSVAKLRAASAEEISTVPGIGPRT 709 >gi|153820417|ref|ZP_01973084.1| excinuclease ABC, subunit C [Vibrio cholerae NCTC 8457] gi|126509040|gb|EAZ71634.1| excinuclease ABC, subunit C [Vibrio cholerae NCTC 8457] Length = 385 Score = 270 bits (690), Expect = 6e-70, Method: Composition-based stats. Identities = 115/400 (28%), Positives = 188/400 (47%), Gaps = 26/400 (6%) Query: 218 AIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTD 277 + + + Q +D +D +ACI G+ G+ + F K Sbjct: 4 KRVTKSSHRRVQEQQFVSDDSLEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIP 63 Query: 278 SESTNAQILSYFLRQFYTD----KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVP 332 S+++ ++ FL Q+Y + P I+L+ EET L+I+ + G KV V Sbjct: 64 SDTSQVEVFESFLSQYYLSHSEARSIPARIILNRGLTEETEALQIAISELAGRKVTFHVN 123 Query: 333 KQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMG 392 G + + ++ A NA + T K++ +++ K ++ + I R+E +D SH MG Sbjct: 124 PTGTRGRYLKLANTNALTAITTKMNHKMTISQRFKALQEELGMDAIT-RMECFDISHTMG 182 Query: 393 CSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFH 452 S + VV + G +K +YR++N+ + DD A M VLERR+S+ + Sbjct: 183 ESTMASCVVFNQEGPLKQEYRRYNI--TGITGGDDYAAMAQVLERRYSKQLD-------- 232 Query: 453 PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKF 510 PD++ +DGGKGQL+ A ++ + II IAKG R G+E Sbjct: 233 -------SSKIPDIIFIDGGKGQLNRAYEIISSCWQDWPKYPKIIGIAKGVTRKPGLETL 285 Query: 511 FVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKR 569 G+ L P L+ IQ +RDE+H AI HR +R K S L+ I G+GP R++ Sbjct: 286 ITIDGDEFHLPSDAPALHLIQHIRDESHNHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQ 345 Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 LL+ G ++ + R+S E +A + GIS +A IY + Sbjct: 346 ALLKYLGGMQELKRASVEEIAKVPGISHALAENIYQALKQ 385 >gi|257484572|ref|ZP_05638613.1| excinuclease ABC subunit C [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 255 Score = 270 bits (689), Expect = 8e-70, Method: Composition-based stats. Identities = 100/255 (39%), Positives = 149/255 (58%), Gaps = 3/255 (1%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D ++LYVGKA NL+KR+ SY H + ++S+I I T+T E EALLLE Sbjct: 1 MFDAEAKLLYVGKAKNLKKRLASYFRKTGHAPKTGALVSRIAQIETTITGNETEALLLEQ 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 +IK +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S A+ ++ Sbjct: 61 TLIKEWRPPYNILLRDDKSYPYVFLSDG-NYPRLSIHRGTKKAKGRYFGPYPSAGAIRES 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194 ++ LQ+TF +R C DS F++RTRPCL +QIKRC GPC G + E Y E V + FL G Sbjct: 120 LSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSVMFLEGR 179 Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFSLYHNKN 252 ++ L +++ +M +A + D+E A RD++A L +Q+ +D + + N Sbjct: 180 SNALSDELNASMEKAAMALDFERAAELRDQVALLRRVQDQQSMDGGTGDVDVVAAFVNPG 239 Query: 253 LACIQTCFFHFGQNR 267 AC+ G+ Sbjct: 240 GACVHLISVRGGRVL 254 >gi|229542083|ref|ZP_04431143.1| Excinuclease ABC C subunit domain protein [Bacillus coagulans 36D1] gi|229326503|gb|EEN92178.1| Excinuclease ABC C subunit domain protein [Bacillus coagulans 36D1] Length = 361 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 99/349 (28%), Positives = 164/349 (46%), Gaps = 15/349 (4%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG Y M G ++YVGKA L+ R++SY + H + T ++ +I ++ + VT T Sbjct: 12 LPEEPGCYLMKSREGEIIYVGKAKKLKNRVRSYFTGS-HDEKTTQLVGEIFDLEWIVTAT 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 EAL+LE N+IK+ +P++NI+L+DDKS+P+I IT + P L R++ +G YFGPF Sbjct: 71 NTEALVLEMNLIKQYRPKYNIMLKDDKSYPFIKIT-DERHPQLILTREAGRDKGKYFGPF 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + A +T L R + L TRPCL +Q+ C G C E+ E+Y E + Sbjct: 130 PNARAAAETKKVLDRLYPL----RRCPESSTRPCLYYQLGLCIGTCAREVGEEEYKEQIR 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR---M 242 + F GG + + + + M QA K D+E A ++++ + + + N Sbjct: 186 KIVHFFHGGYRAVLKDMKKEMLQAAKKLDFEKAEQLKEQIMQIEVTMEDQNIVLNDPVSR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F C+ + G+ F S+ L + + Sbjct: 246 DIFGFAVQDGFMCVHVFYMRDGRIIEREVIFRPIGSKEPKRAFLDFLQHFYGESGNTLPK 305 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 +L A EI +I PK+G+K+++++ A NA + Sbjct: 306 EMLIPAAVGKEAAEICVS------ARIVQPKRGQKKEMVQLATKNARIA 348 >gi|45259350|emb|CAF32984.1| UvrC protein [Pseudomonas putida] Length = 248 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 92/233 (39%), Positives = 139/233 (59%), Gaps = 1/233 (0%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+M D R+LYVGKA NL+KR+ SY + ++ +I + T+T E E Sbjct: 17 RPGVYRMFDAEARLLYVGKAKNLKKRLASYFRKTGLAPKTAALVGRIAQVETTITANETE 76 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE N+IK +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S Sbjct: 77 ALLLEQNLIKEWRPPYNILLRDDKSYPYVFLSDG-DFPRLGIHRGAKKAKGRYFGPYPSA 135 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 A+ ++++ LQ+ F +R C DS + +RTRPCL +QIKRC GPC G + ++Y + + + Sbjct: 136 GAIRESLSLLQKAFSVRQCEDSYYANRTRPCLQYQIKRCKGPCVGLVDKDEYADDIRHSV 195 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 FL G + L ++ M +A + ++E A RD++A L +Q+ Sbjct: 196 MFLEGRSQQLGNELNAEMEKAAMALNFEKAAELRDQIALLRRVQDQQYIEGGT 248 >gi|551931|gb|AAA25822.1| uvrC [Pseudomonas fluorescens] Length = 232 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 91/217 (41%), Positives = 133/217 (61%), Gaps = 1/217 (0%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY+M D R+LYVGKA NL+ R+ SY + ++++I I T+T E E Sbjct: 17 RPGVYRMFDSDARLLYVGKAKNLKNRLSSYFRKTGQAPKTAALVARIAQIETTITANETE 76 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 ALLLE +IK +P +NILLRDDKS+PY+ ++D P HR + +G YFGP+ S Sbjct: 77 ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDG-DFPRFSIHRGAKRQKGKYFGPYPSA 135 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 A+ ++++ LQ+TF +R C DS +++RTRPCL +QIKRC PC G + E Y E V + Sbjct: 136 GAIRESLSLLQKTFMVRQCEDSYYKNRTRPCLQYQIKRCKAPCVGLVEPEVYAEDVRHSV 195 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRL 225 FL G ++ L ++++ M A D+E A RD++ Sbjct: 196 MFLEGRSNALTDELSTAMEAAASTLDFEKAAELRDQI 232 >gi|183601616|ref|ZP_02962986.1| excinuclease ABC subunit C [Bifidobacterium animalis subsp. lactis HN019] gi|241190885|ref|YP_002968279.1| excinuclease ABC subunit C [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196291|ref|YP_002969846.1| excinuclease ABC subunit C [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219222|gb|EDT89863.1| excinuclease ABC subunit C [Bifidobacterium animalis subsp. lactis HN019] gi|240249277|gb|ACS46217.1| excinuclease ABC subunit C [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250845|gb|ACS47784.1| excinuclease ABC subunit C [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793874|gb|ADG33409.1| excinuclease ABC subunit C [Bifidobacterium animalis subsp. lactis V9] Length = 796 Score = 269 bits (688), Expect = 9e-70, Method: Composition-based stats. Identities = 94/303 (31%), Positives = 157/303 (51%), Gaps = 8/303 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +P PGVY+ D G+V+YVGKA NL+ R+ +Y R M+ ++ + Sbjct: 56 KTGDIPAQPGVYKWRDGDGQVIYVGKAKNLRNRLSNYFQPLRQLHPRTQTMVLTARSLEW 115 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TE+EAL LE IK PRFN+ RDDK++PY+ ++ + P ++ R Sbjct: 116 TVVGTELEALTLEYTWIKEFDPRFNVQFRDDKTYPYLALSIGEEYPRIWVTRSRKRRDTR 175 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 Y+GP+A V + K+++ L RTF +R+C D+ FR RPCLL I +CS PC G I+ Sbjct: 176 YYGPYAKVWDLRKSLDGLLRTFPVRTCTDANFRKAQLTNRPCLLASIGKCSAPCVGRITP 235 Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + + + L+GG + K+ M +A+ + D+E A RD + LS + N Sbjct: 236 QDHKRLCEQLVGVLTGGIGKSYVAKLTAAMKEASAELDFEKAARLRDEIQMLSTVVEQNA 295 Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 + ++ D F + ++ A + F G RG + ++ + +A+++S + Q Sbjct: 296 VVLDQDVDADVFGIASDELEASVHAFFVRSGSIRGERNWSVERIEDVDDAELISDLIMQV 355 Query: 294 YTD 296 Y++ Sbjct: 356 YSE 358 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 103/347 (29%), Positives = 156/347 (44%), Gaps = 37/347 (10%) Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P P +L+S LE + G V I P +G KR+++E+A NA ++ + Sbjct: 456 APVPRQVLVSVMPARADDLEQYLRRLRGGAVSIGTPARGNKRQLLERAEQNAQQALQRSK 515 Query: 357 STEISHQMI----LKDFTKKFALPHIPKRIEIYDNSHIMG-CSAVGCMVVVGENGFVKNQ 411 + IS + D L P RIE YD S+ +G V MVV + K++ Sbjct: 516 MSRISDISARTTAMNDVADALGLSQAPLRIECYDISNTVGGAFQVASMVVFEDGMARKSE 575 Query: 412 YRKFNLHPNDVKT-QDDCAMMRMVLERRFS----------------QLIKNEE------- 447 YR+F + D K DD + L RRF + + E Sbjct: 576 YRRFAIRGADGKGAVDDLNALYETLTRRFKHGNIAGDTGESMDNEKRASQEGELESAEQV 635 Query: 448 -NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAG 506 F P++V++DGGK Q+ AA L+ V + + + +AK + Sbjct: 636 QQEIVQQNTDRRHFAYKPNLVVVDGGKPQVMAAAKALEDCGVTD-VAVCGLAKRME---- 690 Query: 507 MEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGP 565 E + ++L +Y +QR+RDE+HRFAI HR+ R+K A S LDEI GIGP Sbjct: 691 -EVWVPDDDYPVILKRSSEGMYLLQRVRDESHRFAINYHRQTRRKGALRSALDEIPGIGP 749 Query: 566 LRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 ++ LL FG+V+ + ++S E L S++G+ A IY H N S Sbjct: 750 TFQKRLLNHFGSVRRMRQASLEELESVKGVGHAKARAIYEALHDNAS 796 >gi|297171307|gb|ADI22312.1| nuclease subunit of the excinuclease complex [uncultured actinobacterium HF0500_01C15] Length = 329 Score = 269 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 87/298 (29%), Positives = 138/298 (46%), Gaps = 5/298 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVT 63 ++ PGVY D GRVLYVGKA +L+ R++SY + + ++ +I+ + V Sbjct: 10 KLTTKPGVYIFRDTGGRVLYVGKAKSLRTRVRSYFHREADLGAKNRKLVREIDALETIVV 69 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E EAL+LEAN+IK +PRFNILLRDDK +PYI +T P +Y R + Q YFG Sbjct: 70 GSESEALILEANLIKEHRPRFNILLRDDKQYPYIKVTVGEPFPRVYVTRHVANDQSRYFG 129 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEKYME 182 P+ SV + + + ++ +RSC + + R CL + I RC PC G S Y Sbjct: 130 PYTSVGPMRQALEVVKHLHTVRSCRYDLPKDSPERACLDYHIGRCKAPCVGLQSETDYGA 189 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---Y 239 + + K L G +++ + M A+ D+E A RD LA L + Sbjct: 190 MIDDILKILEGKTEEIRDTVEERMESASALLDFERAAKLRDALAGLDSLAREQRVQRTKG 249 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D + + L G + + +++ +L + + Y + Sbjct: 250 GSFDIVGMARDGELGAGVVLKVRSGLLLSRDSLRFVRIFQESDSDLLESLISRHYLGR 307 >gi|260877708|ref|ZP_05890063.1| UvrABC system protein C [Vibrio parahaemolyticus AN-5034] gi|308090514|gb|EFO40209.1| UvrABC system protein C [Vibrio parahaemolyticus AN-5034] Length = 385 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 108/401 (26%), Positives = 184/401 (45%), Gaps = 26/401 (6%) Query: 217 SAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT 276 + + Q ++ + MD +ACI G+ G+ + F K Sbjct: 3 KFRDQIQAIRRVQEQQYVSEDSMDDMDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKI 62 Query: 277 DSESTNAQILSYFLRQFYTDKP----CPENILLSEEA-EETSLLEISFFKQYGYKVKITV 331 ++ ++ FL Q+Y P I+L++E ++ ++ + + G KV Sbjct: 63 PQNTSQQEVFDSFLTQYYLSHNEARTIPSRIILNQELADDLEPIQKALSEVAGRKVHFHT 122 Query: 332 PKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIM 391 G + + ++ + NA + T K++ +++ K + + R+E +D SH M Sbjct: 123 SPTGARGRYLKLSNTNALTAITTKINHKMTINQRFKALRETLGME-SIMRMECFDISHTM 181 Query: 392 GCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNF 451 G S + VV G VK +YR++N+ + DD A M LERR+S+ + E+ Sbjct: 182 GESTIASCVVFNNEGPVKQEYRRYNI--TGITGGDDYAAMGQALERRYSKQLDVEK---- 235 Query: 452 HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEK 509 PD++ +DGGKGQL+ A ++ + + R +I IAKG R G+E Sbjct: 236 -----------IPDIIFIDGGKGQLNRAHEIIAQYWGDWPKRPIMIGIAKGVTRKPGLET 284 Query: 510 FFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRK 568 GE L P L+ IQ +RDE+H AI HR +R K S L+ I G+GP R+ Sbjct: 285 LITVDGEEFNLPSDAPALHLIQHIRDESHNHAIAGHRAKRGKTRRTSALEGIEGVGPKRR 344 Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + LL+ G ++ + R+S E +A + GIS +A I+ + Sbjct: 345 QALLKYMGGLQELKRASVEEIAKVPGISHSLAEIIFQALKQ 385 >gi|153827725|ref|ZP_01980392.1| excinuclease ABC, subunit C [Vibrio cholerae MZO-2] gi|149737799|gb|EDM52704.1| excinuclease ABC, subunit C [Vibrio cholerae MZO-2] Length = 374 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 115/392 (29%), Positives = 186/392 (47%), Gaps = 26/392 (6%) Query: 226 AALSHIQNHNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQI 285 + Q +D +D +ACI G+ G+ + F K S+++ ++ Sbjct: 1 RRVQEQQFVSDDSLEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEV 60 Query: 286 LSYFLRQFYTD----KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKI 340 FL Q+Y + P I+L+ EET L+I+ + G KV V G + + Sbjct: 61 FESFLSQYYLSHSEARSIPARIILNRGLTEETEALQIAISELAGRKVTFHVNPTGTRGRY 120 Query: 341 IEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMV 400 ++ A NA + T K++ +++ K ++ + I R+E +D SH MG S + V Sbjct: 121 LKLANTNALTAITTKINHKMTISQRFKALQEELGMDAIT-RMECFDISHTMGESTMASCV 179 Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSF 460 V + G +K +YR++N+ + DD A M VLERR+S+ + Sbjct: 180 VFNQEGPLKQEYRRYNI--TGITGGDDYAAMAQVLERRYSKQLD---------------S 222 Query: 461 PSWPDVVILDGGKGQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEAL 518 PD++ +DGGKGQL+ A ++ + II IAKG R G+E G+ Sbjct: 223 SKIPDIIFIDGGKGQLNRAYEIISSCWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEF 282 Query: 519 VLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGT 577 L P L+ IQ +RDE+H AI HR +R K S L+ I G+GP R++ LL+ G Sbjct: 283 HLPSDAPALHLIQHIRDESHNHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGG 342 Query: 578 VKMISRSSPETLASIEGISKKIACKIYNHFHK 609 ++ + R+S E +A + GIS +A IY + Sbjct: 343 MQELKRASVEEIAKVPGISHALAENIYQALKQ 374 >gi|262190259|ref|ZP_06048531.1| excinuclease ABC subunit C [Vibrio cholerae CT 5369-93] gi|262033854|gb|EEY52322.1| excinuclease ABC subunit C [Vibrio cholerae CT 5369-93] Length = 342 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 110/338 (32%), Positives = 176/338 (52%), Gaps = 9/338 (2%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M + V+YVGKA +L+KR+ SY N + + ++S I I TVT TE EAL+LE Sbjct: 1 MYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTVTHTETEALILEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK+ P++N+LLRDDKS+PYI ++ HK P L HR + +G YFGP+ AV +T Sbjct: 61 NYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKKRRGEYFGPYPDSGAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193 ++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC IS + Y E VH + FL G Sbjct: 120 LHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQEIVHYLRLFLQG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHN 250 ++ + + M QA+ + +E A RD++ A+ +Q + +D Sbjct: 180 KDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDSLEDLDVLGFAQE 239 Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLS 306 +ACI G+ G+ + F K S+++ ++ FL Q+Y + P I+L+ Sbjct: 240 NGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHSEARSIPARIILN 299 Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344 E + + +++ + E Sbjct: 300 RGLTEETEALQTRSVNLQGAKSLSMSIHWYAWPLSETR 337 >gi|219683848|ref|YP_002470231.1| excinuclease ABC subunit C [Bifidobacterium animalis subsp. lactis AD011] gi|219621498|gb|ACL29655.1| excinuclease ABC, C subunit [Bifidobacterium animalis subsp. lactis AD011] Length = 759 Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 94/303 (31%), Positives = 157/303 (51%), Gaps = 8/303 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +P PGVY+ D G+V+YVGKA NL+ R+ +Y R M+ ++ + Sbjct: 19 KTGDIPAQPGVYKWRDGDGQVIYVGKAKNLRNRLSNYFQPLRQLHPRTQTMVLTARSLEW 78 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TE+EAL LE IK PRFN+ RDDK++PY+ ++ + P ++ R Sbjct: 79 TVVGTELEALTLEYTWIKEFDPRFNVQFRDDKTYPYLALSIGEEYPRIWVTRSRKRRDTR 138 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 Y+GP+A V + K+++ L RTF +R+C D+ FR RPCLL I +CS PC G I+ Sbjct: 139 YYGPYAKVWDLRKSLDGLLRTFPVRTCTDANFRKAQLTNRPCLLASIGKCSAPCVGRITP 198 Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + + + L+GG + K+ M +A+ + D+E A RD + LS + N Sbjct: 199 QDHKRLCEQLVGVLTGGIGKSYVAKLTAAMKEASAELDFEKAARLRDEIQMLSTVVEQNA 258 Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 + ++ D F + ++ A + F G RG + ++ + +A+++S + Q Sbjct: 259 VVLDQDVDADVFGIASDELEASVHAFFVRSGSIRGERNWSVERIEDVDDAELISDLIMQV 318 Query: 294 YTD 296 Y++ Sbjct: 319 YSE 321 Score = 245 bits (624), Expect = 3e-62, Method: Composition-based stats. Identities = 103/347 (29%), Positives = 156/347 (44%), Gaps = 37/347 (10%) Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P P +L+S LE + G V I P +G KR+++E+A NA ++ + Sbjct: 419 APVPRQVLVSVMPARADDLEQYLRRLRGGAVSIGTPARGNKRQLLERAEQNAQQALQRSK 478 Query: 357 STEISHQMI----LKDFTKKFALPHIPKRIEIYDNSHIMG-CSAVGCMVVVGENGFVKNQ 411 + IS + D L P RIE YD S+ +G V MVV + K++ Sbjct: 479 MSRISDISARTTAMNDVADALGLSQAPLRIECYDISNTVGGAFQVASMVVFEDGMARKSE 538 Query: 412 YRKFNLHPNDVKT-QDDCAMMRMVLERRFS----------------QLIKNEE------- 447 YR+F + D K DD + L RRF + + E Sbjct: 539 YRRFAIRGADGKGAVDDLNALYETLTRRFKHGNIAGDTGESMDNEKRASQEGELESAEQV 598 Query: 448 -NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAG 506 F P++V++DGGK Q+ AA L+ V + + + +AK + Sbjct: 599 QQEIVQQNTDRRHFAYKPNLVVVDGGKPQVMAAAKALEDCGVTD-VAVCGLAKRME---- 653 Query: 507 MEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGP 565 E + ++L +Y +QR+RDE+HRFAI HR+ R+K A S LDEI GIGP Sbjct: 654 -EVWVPDDDYPVILKRSSEGMYLLQRVRDESHRFAINYHRQTRRKGALRSALDEIPGIGP 712 Query: 566 LRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 ++ LL FG+V+ + ++S E L S++G+ A IY H N S Sbjct: 713 TFQKRLLNHFGSVRRMRQASLEELESVKGVGHAKARAIYEALHDNAS 759 >gi|289178624|gb|ADC85870.1| Excinuclease ABC subunit C [Bifidobacterium animalis subsp. lactis BB-12] Length = 841 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 94/303 (31%), Positives = 157/303 (51%), Gaps = 8/303 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +P PGVY+ D G+V+YVGKA NL+ R+ +Y R M+ ++ + Sbjct: 101 KTGDIPAQPGVYKWRDGDGQVIYVGKAKNLRNRLSNYFQPLRQLHPRTQTMVLTARSLEW 160 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TE+EAL LE IK PRFN+ RDDK++PY+ ++ + P ++ R Sbjct: 161 TVVGTELEALTLEYTWIKEFDPRFNVQFRDDKTYPYLALSIGEEYPRIWVTRSRKRRDTR 220 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 Y+GP+A V + K+++ L RTF +R+C D+ FR RPCLL I +CS PC G I+ Sbjct: 221 YYGPYAKVWDLRKSLDGLLRTFPVRTCTDANFRKAQLTNRPCLLASIGKCSAPCVGRITP 280 Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + + + L+GG + K+ M +A+ + D+E A RD + LS + N Sbjct: 281 QDHKRLCEQLVGVLTGGIGKSYVAKLTAAMKEASAELDFEKAARLRDEIQMLSTVVEQNA 340 Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 + ++ D F + ++ A + F G RG + ++ + +A+++S + Q Sbjct: 341 VVLDQDVDADVFGIASDELEASVHAFFVRSGSIRGERNWSVERIEDVDDAELISDLIMQV 400 Query: 294 YTD 296 Y++ Sbjct: 401 YSE 403 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 103/347 (29%), Positives = 156/347 (44%), Gaps = 37/347 (10%) Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P P +L+S LE + G V I P +G KR+++E+A NA ++ + Sbjct: 501 APVPRQVLVSVMPARADDLEQYLRRLRGGAVSIGTPARGNKRQLLERAEQNAQQALQRSK 560 Query: 357 STEISHQMI----LKDFTKKFALPHIPKRIEIYDNSHIMG-CSAVGCMVVVGENGFVKNQ 411 + IS + D L P RIE YD S+ +G V MVV + K++ Sbjct: 561 MSRISDISARTTAMNDVADALGLSQAPLRIECYDISNTVGGAFQVASMVVFEDGMARKSE 620 Query: 412 YRKFNLHPNDVKT-QDDCAMMRMVLERRFS----------------QLIKNEE------- 447 YR+F + D K DD + L RRF + + E Sbjct: 621 YRRFAIRGADGKGAVDDLNALYETLTRRFKHGNIAGDTGESMDNEKRASQEGELESAEQV 680 Query: 448 -NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAG 506 F P++V++DGGK Q+ AA L+ V + + + +AK + Sbjct: 681 QQEIVQQNTDRRHFAYKPNLVVVDGGKPQVMAAAKALEDCGVTD-VAVCGLAKRME---- 735 Query: 507 MEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGP 565 E + ++L +Y +QR+RDE+HRFAI HR+ R+K A S LDEI GIGP Sbjct: 736 -EVWVPDDDYPVILKRSSEGMYLLQRVRDESHRFAINYHRQTRRKGALRSALDEIPGIGP 794 Query: 566 LRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 ++ LL FG+V+ + ++S E L S++G+ A IY H N S Sbjct: 795 TFQKRLLNHFGSVRRMRQASLEELESVKGVGHAKARAIYEALHDNAS 841 >gi|311031409|ref|ZP_07709499.1| excinuclease ABC subunit C [Bacillus sp. m3-13] Length = 427 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 112/454 (24%), Positives = 201/454 (44%), Gaps = 35/454 (7%) Query: 164 IKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRD 223 + +C PC +S E + V +FL+GG +K ++ M +A+ ++E A RD Sbjct: 1 MGQCLAPCVEHVSEETNKQMVDGIVRFLNGGYKEVKTELTEKMMKASENLEFERAQEFRD 60 Query: 224 RLAALSHIQNHNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSES 280 ++ + N D F +K C+Q F G+ +E Sbjct: 61 QIINIEATMEKQKMEMNDFVDRDVFGFAFDKGWMCVQVFFIRQGKLIERDVSLFPIYNEP 120 Query: 281 TNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKI 340 + + P+ ++L + + E+ + P++G+K+++ Sbjct: 121 EEDFLTFLGQFYSKQNHFVPKEVMLPSQIDLPVAQELLQT-------NVLQPQRGKKKQL 173 Query: 341 IEQALINAH----RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAV 396 ++ A NA + E +++ K + P RIE +DNS+I G V Sbjct: 174 VDLANKNAKVALGEKFSLIERDESRTIKAVENLGKILGI-ITPHRIEAFDNSNIQGTDPV 232 Query: 397 GCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQ 456 MVV + K +YRK+ V+ DD MR V+ RR+++++K Sbjct: 233 SAMVVFIDGKPEKREYRKYKTKS--VQGPDDYESMREVVRRRYTRVLKE----------- 279 Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE 516 PD++++DG KG +SA + VL + ++ + I+ +AK K ++ Sbjct: 280 ---SLPLPDLIVIDGAKGHMSAVRDVL-ENELDLFVPIVGLAKDDKHRTSN-LLAGEEAM 334 Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSF 575 + L Y +QR++DE HRFAIT HR+ R K+ + S LDEI G+G RK+ L++ F Sbjct: 335 IVPLERTSQEFYLLQRIQDEVHRFAITFHRQIRSKSVFQSILDEITGVGATRKKALMKHF 394 Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 G+V + ++ E + + + I K IA +I+ + Sbjct: 395 GSVSKMKEATVEEIQAAK-IPKPIAEEIFKKLRE 427 >gi|283850732|ref|ZP_06368019.1| excinuclease ABC, C subunit [Desulfovibrio sp. FW1012B] gi|283573975|gb|EFC21948.1| excinuclease ABC, C subunit [Desulfovibrio sp. FW1012B] Length = 695 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 91/297 (30%), Positives = 143/297 (48%), Gaps = 4/297 (1%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + P PGVY M G++LYVGKA NL+ R+ SY HT + ++ +I + Sbjct: 5 EPKNFPTSPGVYLMKGGKGKILYVGKAKNLRARLGSYFRGETGHTVKTAALVGRIEAVDV 64 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E EALLLE+++IK+ +PR+N++L+DDK++ + + P L R + Sbjct: 65 LLTASEKEALLLESSLIKKHRPRYNVVLKDDKNYILFKLDKRSDFPRLAFTRRVERDGAT 124 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGPF S A T L R F LR C D +R RPCL + I +C PC + ++Y Sbjct: 125 YFGPFTSAAAARTTWKELGRVFPLRKCGDRTLHNRVRPCLYYFIGQCLAPCVLPVEPQEY 184 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 M V + FL+G + + + + M +A + +E A RD L A+ ++ Sbjct: 185 MTLVRRVEAFLTGRSAEILRAVQKEMEEAAERLAFEQAAKLRDLLKAMRRTVEGQATVLT 244 Query: 241 R---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 R MD ++ ++ + F G+ TFF + + L QFY Sbjct: 245 RLVDMDVVNMAATEHGVGLCVLFVRQGRLLDRKTFFFPGVEAAEADAVAVTALVQFY 301 Score = 157 bits (397), Expect = 5e-36, Method: Composition-based stats. Identities = 79/274 (28%), Positives = 124/274 (45%), Gaps = 30/274 (10%) Query: 331 VPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHI 390 P+ E+R+++E A +NA R+ + IL +KF LP + RIE D SH+ Sbjct: 432 PPRGREERQLLEMAAVNARRAAEEAAKAAEGD--ILPSLARKFGLPALS-RIEAVDVSHL 488 Query: 391 MGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLN 450 G MVV + K+ YR + + + D A+ +R Sbjct: 489 GGKGVRVGMVVFEDGTPQKSDYRAYAFPELEGTSDDYLALATFAAKR------------- 535 Query: 451 FHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGME-- 508 S P WPD++++DGGKGQL A L + V + SIAKG +RS Sbjct: 536 ------AASGPPWPDLLLIDGGKGQLEAVSRSLTEAGVAGAFALASIAKGERRSQNEMDD 589 Query: 509 -KFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK---AAYSPLDEINGIG 564 + + L L P L F+QR+RD H F+I R+RR + + S + E+ G+G Sbjct: 590 VIYVPGRKNPLSLRSGSPELLFLQRVRDTVHDFSIG--RQRRARNTASLQSTVLELPGVG 647 Query: 565 PLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 P RLL ++FG+V + + + + G+ + Sbjct: 648 PKTARLLWEAFGSVTAMRAAGAGEIMAKTGLGPR 681 >gi|293364958|ref|ZP_06611675.1| excision endonuclease subunit UvrC [Streptococcus oralis ATCC 35037] gi|291316408|gb|EFE56844.1| excision endonuclease subunit UvrC [Streptococcus oralis ATCC 35037] Length = 448 Score = 268 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 105/453 (23%), Positives = 195/453 (43%), Gaps = 37/453 (8%) Query: 168 SGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAA 227 + + E FL G + + + + M A ++E A +RD + A Sbjct: 1 MAHTICKKDEAYFKSMAQEVSDFLKGQDDKIIDDLKGKMAVAAQSMEFERAAEYRDLIQA 60 Query: 228 LSHIQNHNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ 284 + ++ + D F Y +K C+Q F G+ ++ Sbjct: 61 IGTLRTKQRVMAKDLQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDF 120 Query: 285 ILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344 + P +L+ ++ +E ++ + K P++GEK++++ A Sbjct: 121 LTYVGQFYQEKSHLVPNEVLIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLA 173 Query: 345 LINAH----RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMV 400 + NA + + Q +++ + +P RIE +DNS+IMG S V MV Sbjct: 174 IKNARVSLEQKFNLLEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMV 232 Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSF 460 V K YRK+ + V DD A MR V+ RR+ ++ + Sbjct: 233 VFVNGKPSKKDYRKYKIKT--VVGPDDYASMREVIRRRYGRVQREG-------------- 276 Query: 461 PSWPDVVILDGGKGQLSAAQG-VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALV 519 + PD++++DGG+GQ++ A+ + ++L ++ I I + K K E F E + Sbjct: 277 LTPPDLIVIDGGQGQVNIAKQVIQEELGLD--IPIAGLQKNDKHQT-HELLFGDPLEVVE 333 Query: 520 LNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTV 578 L+ + +QR++DE HRFAIT HR+ R K ++S LD I G+GP RK+ L++ F ++ Sbjct: 334 LSRNSQEFFLLQRIQDEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSL 393 Query: 579 KMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +S + + + G+ + +A + + Sbjct: 394 AKIKEASVDEIVEV-GVPRAVAEAVQRKLNPQE 425 >gi|330950409|gb|EGH50669.1| excinuclease ABC subunit C [Pseudomonas syringae Cit 7] Length = 250 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 99/250 (39%), Positives = 146/250 (58%), Gaps = 3/250 (1%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D +LYVGKA NL+KR+ SY H + ++S+I I T+T E EALLLE Sbjct: 1 MFDAEATLLYVGKAKNLKKRLASYFRKTGHAPKTGALVSRIAQIETTITGNETEALLLEQ 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 +IK +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S A+ ++ Sbjct: 61 TLIKEWRPPYNILLRDDKSYPYVFLSDN-AFPRLSIHRGTKKAKGRYFGPYPSAGAIRES 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194 ++ LQ+TF +R C DS F++RTRPCL +QIKRC GPC G + E Y E V + FL G Sbjct: 120 LSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSVMFLEGR 179 Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFSLYHNKN 252 ++ L +++ +M +A + D+E A RD++A L +Q+ +D + + N Sbjct: 180 SNALSDELNASMEKAAMALDFERAAELRDQVALLRRVQDQQSMDGGTGDVDVVAAFVNPG 239 Query: 253 LACIQTCFFH 262 AC+ Sbjct: 240 GACVHLISVR 249 >gi|289626299|ref|ZP_06459253.1| excinuclease ABC subunit C [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 261 Score = 267 bits (682), Expect = 5e-69, Method: Composition-based stats. Identities = 104/278 (37%), Positives = 150/278 (53%), Gaps = 19/278 (6%) Query: 335 GEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCS 394 G + + + A+ NA ++ T +L+ + K L P R+E YD SH G + Sbjct: 1 GTRARWQQMAVTNAEQALTARLANRQHVASRFEALAKVLGLEDPPMRLECYDISHSSGEA 60 Query: 395 AVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPK 454 V VV G G +K+ YR+FN+ V DD A M L RR+S++ E L Sbjct: 61 TVASCVVFGPEGPIKSDYRRFNIEG--VTAGDDYAAMHQALTRRYSRIKAGEGKL----- 113 Query: 455 KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK 514 PDV+++DGGKGQ+S A+ VL +L V + I ++ +AKG R AG E ++ Sbjct: 114 ---------PDVLLVDGGKGQMSMARDVLNELQVPDLI-LLGVAKGTTRKAGFETLYLND 163 Query: 515 G-EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLL 572 L P L+ IQ++RDEAHRFAIT HR RR K S L+ + G+GP R+R LL Sbjct: 164 AAHEFTLPGDSPALHLIQQIRDEAHRFAITGHRARRGKTRRTSTLEGVAGVGPTRRRDLL 223 Query: 573 QSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 + FG ++ +SR+S + +A GISKK+A IY + H Sbjct: 224 KHFGGLQELSRASIDEIAKAPGISKKLAESIYANLHSE 261 >gi|269963930|ref|ZP_06178241.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269831330|gb|EEZ85478.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 358 Score = 266 bits (679), Expect = 1e-68, Method: Composition-based stats. Identities = 109/376 (28%), Positives = 179/376 (47%), Gaps = 26/376 (6%) Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP--- 298 MD +ACI G+ G+ + F K ++ ++ FL Q+Y Sbjct: 1 MDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPQNTSQQEVFDSFLTQYYLSHNEAR 60 Query: 299 -CPENILLSEEAEET-SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P I+L++E ++ + + G KV+ G + + ++ + NA + T K+ Sbjct: 61 TIPSRIILNQELGGDIEPIQQALSEVAGRKVQFHSSPTGSRGRYLKLSNTNALTAITTKI 120 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + +++ K + + I R+E +D SH MG S + VV G VK +YR++N Sbjct: 121 NHKMTINQRFKALREVLGMETIA-RMECFDISHTMGESTIASCVVFNSEGPVKQEYRRYN 179 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + DD A M LERR+S+ + E+ PD++ +DGGKGQL Sbjct: 180 I--TGITGGDDYAAMGQALERRYSKQLDVEK---------------IPDIIFIDGGKGQL 222 Query: 477 SAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 + A ++ + + R T+I IAKG R G+E GE L P L+ IQ +R Sbjct: 223 NRAHEIISQYWGDWPKRPTMIGIAKGVTRKPGLETLITVDGEEFNLPSDAPALHLIQHIR 282 Query: 535 DEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE+H AI HR +R K S L+ I G+GP R++ LL+ G ++ + R+S E +A + Sbjct: 283 DESHNHAIAGHRAKRGKTRRTSALEGIEGVGPKRRQALLKYMGGLQELKRASVEEIAKVP 342 Query: 594 GISKKIACKIYNHFHK 609 GIS +A I+ + Sbjct: 343 GISHSLAEIIFQALKQ 358 >gi|239906770|ref|YP_002953511.1| UvrABC system protein C [Desulfovibrio magneticus RS-1] gi|239796636|dbj|BAH75625.1| UvrABC system protein C [Desulfovibrio magneticus RS-1] Length = 691 Score = 266 bits (679), Expect = 1e-68, Method: Composition-based stats. Identities = 89/317 (28%), Positives = 144/317 (45%), Gaps = 5/317 (1%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 + P PGVY M G++LYVGKA NL+ R+ SY ++ T + +++++ + Sbjct: 5 EPKNFPMSPGVYLMKGARGKILYVGKAKNLRSRLSSYFRNDAGLTVKTAALVAKVEGVDV 64 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T +E EALLLE+++IK+ +PR+NI+L+DDK++ + + P L R + Sbjct: 65 LLTASEKEALLLESSLIKKHRPRYNIVLKDDKNYILFKLDKRSPFPRLAFTRRVERDGAA 124 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGPF S A T L R F LR C D +R RPCL I +C PC + +Y Sbjct: 125 YFGPFTSAAAARATWKELGRAFPLRKCGDRAMANRVRPCLYHSIGQCLAPCVLAVDPGEY 184 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 V + FL+G + + + M QA +E A RD L A+ ++ Sbjct: 185 AALVRRVEAFLTGRSAEVLRAVEHEMEQAAESLAFEKAAGLRDLLRAMKKTVEGQATVLT 244 Query: 241 R---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLK-TDSESTNAQILSYFLRQFYTD 296 R +D L + F G+ TFF ++ ++ L+ + + Sbjct: 245 RLIDIDVVGLAAVPTGVGLCVLFVRQGRLLDRKTFFFPGVTADEARGAAVTAMLQFYRPE 304 Query: 297 KPCPENILLSEEAEETS 313 P I++ + Sbjct: 305 SFIPPRIVVPDVLTAAE 321 Score = 142 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 71/238 (29%), Positives = 103/238 (43%), Gaps = 24/238 (10%) Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424 +L K F L + RIE D SH+ G +VV E K+ YR + + + Sbjct: 460 LLPALAKAFGLARLS-RIEAVDVSHLGGKGVRVGLVVFEEGAPRKSDYRSYGFPEAEGSS 518 Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484 D A L K+ + P WPD++++DGGKGQL+A + L Sbjct: 519 DDYLA-------------------LAAFAAKRAEAGPPWPDLLLIDGGKGQLAAVERALG 559 Query: 485 KLNVENRITIISIAKGPKRSAGME---KFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541 + + SIAKG +RS F + L L P L F+QR+RD H ++ Sbjct: 560 QAGAGGAFALASIAKGDRRSQNEMEDVIFVPGRKNPLGLRPGSPELLFLQRVRDTVHDYS 619 Query: 542 ITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 I R RKK S L + GIGP RLL ++FG+ + +S E + G+ Sbjct: 620 IGRQRLARKKTGLRSDLLALPGIGPKTARLLWEAFGSTAAMRAASVEAVRERTGLGPA 677 >gi|294790861|ref|ZP_06756019.1| excinuclease ABC subunit C [Scardovia inopinata F0304] gi|294458758|gb|EFG27111.1| excinuclease ABC subunit C [Scardovia inopinata F0304] Length = 775 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 97/303 (32%), Positives = 162/303 (53%), Gaps = 8/303 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +P PGVY+ D GRV+YVGKA NL+ R+ +Y N R M+ ++ + Sbjct: 42 KTSDIPAQPGVYKWRDANGRVIYVGKAKNLRNRLSNYFQPLNRLHPRTQSMVLIARSLEW 101 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T+ TE+E+L LE IK PRFN++ RDDK++PY+ I+ ++P ++ R+ + Sbjct: 102 TLVGTELESLTLEYTWIKEFDPRFNVVFRDDKTYPYLAISIGDEVPRIWVTRNRNKRGTR 161 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP+A V + ++SL + +R+C SVF RPCLL I +CS PC G IS Sbjct: 162 YFGPYAKVWNMRHALDSLLNAYPVRTCTQSVFHKAQVTGRPCLLAYIGKCSAPCVGRISL 221 Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 E + + L+G + +K+ +M QA+ D+E A RD+++ALS + N Sbjct: 222 EDHRAMCEQVVGILTGRLGPSYAKKLTADMKQASADLDFERAARLRDQISALSSVLEQNS 281 Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 +++ D F L ++ A + F G RG ++ ++ + ++Q+++ + Q Sbjct: 282 VVFDTDVDADIFGLASDELEASVHCFFVRAGTIRGERSWSVERVEDIDDSQLMADLISQV 341 Query: 294 YTD 296 Y+D Sbjct: 342 YSD 344 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 116/529 (21%), Positives = 206/529 (38%), Gaps = 50/529 (9%) Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 GP A + T + Q + L + R + L +++ S ++ ++ + Sbjct: 239 LGP---SYAKKLTADMKQASADLDFERAARLRDQISA-LSSVLEQNSVVFDTDVDADIFG 294 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 E + + ED + + + D ++ + + Sbjct: 295 LASDELEASVHCFFVRAGTIRGERSWSVERVEDIDDSQLMADLISQVYSDLMEENKREEG 354 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 + LA Q ++R T ++ E T L + P Sbjct: 355 VSIAVSTSRDALAPSQQVTADDARSRAQATRRRRSRQEETGRDDLLSPIS------AVPR 408 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361 ++L + + LE G V IT +GEK+ ++++AL NA +S + ++ ++ Sbjct: 409 EVILPVKPDRPEELEEWLTSLRGSAVSITTASRGEKKTLMDRALTNAQQSLARLKASRMT 468 Query: 362 HQ----MILKDFTKKFALPHIPKRIEIYDNSHIMGC-SAVGCMVVVGENGFVKNQYRKFN 416 L D + L P RIE YD S+ G V MVV + K+QYR F Sbjct: 469 DIGMRTQALNDIAQALDLAEAPLRIECYDISNASGGGYQVASMVVFEDGMAKKSQYRHFA 528 Query: 417 LHPNDVKTQ-DDCAMMRMVLERRFSQ---------------------------LIKNEEN 448 + D + DD + + L RRF + + Sbjct: 529 IRGADGQGALDDTSALYETLTRRFKHGNVAGDSGQSMEDEKRSQTLLSSQSLDHRQEAQA 588 Query: 449 LNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGME 508 F P+++++DGG Q++AA L+ L + + + + +AK + E Sbjct: 589 SGSASAATRRHFAYKPNLIVVDGGLPQVNAAAQALEDLGITD-VHVCGLAKKLE-----E 642 Query: 509 KFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLR 567 + + L++ + +Y +QR+RDE+HRFAIT HRK+R K + S LD I GIG Sbjct: 643 IWLPHEEYPLIMKRQSEGMYLMQRVRDESHRFAITYHRKKRSKGSLRSALDSIEGIGLSY 702 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616 ++ LL FG+VK + +++ + L + G+ K A IY H + T Sbjct: 703 QKRLLNHFGSVKAMRQATVQELQEVRGVGAKKAEAIYQSLHPIQDQSDT 751 >gi|289745171|ref|ZP_06504549.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis 02_1987] gi|289685699|gb|EFD53187.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis 02_1987] Length = 493 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 98/299 (32%), Positives = 149/299 (49%), Gaps = 9/299 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA +L+ R+ SY + R +++ + +TV Sbjct: 13 SIPVEPGVYRFRDQHGRVIYVGKAKSLRSRLTSYFADVASLAPRTRQLVTTAAKVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE IK PRFN+ RDDKS+P + +T + P L +R YFG Sbjct: 73 GTEVEALQLEYTWIKEFDPRFNVRYRDDKSYPVLAVTLGEEFPRLMVYRGPRRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F R+C+ VF+ RPCLL I +CS PC G + + ++ Sbjct: 133 PYSHAWAIRETLDLLTRVFPARTCSAGVFKRHRQIDRPCLLGYIDKCSAPCIGRVDAAQH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + V + FLSG + + MN A + D+E A RD L+AL + Sbjct: 193 RQIVADFCDFLSGKTDRFARALEQQMNAAAEQLDFERAARLRDDLSALKRAMEKQAVVLG 252 Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE--STNAQILSYFLRQFY 294 D + ++ A +Q G+ RG + ++ E + Q++ FL QFY Sbjct: 253 DGTDADVVAFADDELEAAVQVFHVRGGRVRGQRGWIIEKPGEPGDSGIQLVEQFLTQFY 311 >gi|256026591|ref|ZP_05440425.1| excinuclease ABC subunit C [Fusobacterium sp. D11] gi|289764595|ref|ZP_06523973.1| excinuclease ABC subunit C [Fusobacterium sp. D11] gi|289716150|gb|EFD80162.1| excinuclease ABC subunit C [Fusobacterium sp. D11] Length = 473 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 143/498 (28%), Positives = 239/498 (47%), Gaps = 34/498 (6%) Query: 117 IQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176 G YFGP+ + N L + F +R C + + RPCL + +K C+GPC + Sbjct: 4 KSGEYFGPYP--YGAWRLKNILMKLFKIRDCNRDMKKLSPRPCLKYYMKSCTGPCVYKDI 61 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 E+Y + V K+ L G L ++ MNQA+ D+E +II+R+++ L I++ Sbjct: 62 KEEYNKNVENLKQVLRGNTSKLINELTTLMNQASQDMDFEKSIIYREQIKELKSIESSQI 121 Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 Y R D F + A I G+ G + + ++ T+ I + Sbjct: 122 IQYERELDEDIFVFKTILDKAFICVLNMRDGKILGKSSTAIDLKNKITDN-IYEAIFMSY 180 Query: 294 YTDKPCPENILLSEEAEET--SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 Y+ P++++L E E +++ ++ K + ++++++ A N R Sbjct: 181 YSKHILPKSLVLDAEYENELSVVVKALTNEESKKKEFHFPKIKSRRKELLDMAYKNLERD 240 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 S + + + +KD L P++IE +D S+I G AV M V E + + Sbjct: 241 LESYFSKKDTIEKGIKDLHDILELKRFPRKIECFDISNIQGKDAVASMSVSIEGRAARKE 300 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YRKF + D DD +MMR V+ERR+S+L + +PDV+++DG Sbjct: 301 YRKFKIRCKDTP--DDFSMMREVIERRYSKLADRD----------------FPDVILIDG 342 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 G GQ+++A VL++L + ++S+AK + E + + L+ L Q Sbjct: 343 GLGQINSAGEVLERLGKIHLSELLSLAKRDE-----EIYKYGESVPYSLSKDMEALKIFQ 397 Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 R+RDEAHRF IT HRK R K S LD+I+GIG +R++ LL FG++ I ++S + L Sbjct: 398 RVRDEAHRFGITYHRKLRSKRIISSELDKIDGIGEVRRKKLLTKFGSISGIKKASIDELK 457 Query: 591 SIEGISKKIACKIYNHFH 608 I I +K+A +I N Sbjct: 458 EI--IPEKVALEIKNKIR 473 >gi|154487299|ref|ZP_02028706.1| hypothetical protein BIFADO_01144 [Bifidobacterium adolescentis L2-32] gi|154083817|gb|EDN82862.1| hypothetical protein BIFADO_01144 [Bifidobacterium adolescentis L2-32] Length = 780 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 90/305 (29%), Positives = 161/305 (52%), Gaps = 8/305 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +P PGVY+ D GRV+YVGKA NL+ R+ +Y R M+ ++ + Sbjct: 54 KTSDIPAQPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYQLHPRTQTMVLTARSLEW 113 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TE+E+L LE IK PRFN++ RDDK++PY+ I+ +IP ++ R Sbjct: 114 TVVGTELESLTLEYTWIKEFDPRFNVVFRDDKTYPYLAISSGERIPRVWVTRSRKRRDTR 173 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP+A V + ++++L +TF +R+C+ SVF RPCLL I +CS PC I + Sbjct: 174 YFGPYAKVWDLRHSLDALLKTFPVRTCSKSVFHKAQLTGRPCLLASIGKCSAPCVNRIGA 233 Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 +++ + ++G + ++ R+M QA+ + ++E A RD++ L + N Sbjct: 234 DEHRRMCEQLVGVMTGRIGKSYIAQLTRDMKQASAELEFEKAARLRDQIQMLGTVVQQNA 293 Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 +++ D F + ++ A + F G RG + ++ + ++A++++ + Q Sbjct: 294 VVFDSDVDADVFGIASDELEASVHAFFVRSGSIRGERNWSVERVEDVSDAELIADLITQV 353 Query: 294 YTDKP 298 Y++ Sbjct: 354 YSETT 358 Score = 250 bits (638), Expect = 5e-64, Method: Composition-based stats. Identities = 97/351 (27%), Positives = 156/351 (44%), Gaps = 38/351 (10%) Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P P +++ E ++ LE G V I V +G+K++++++A NA ++ + Sbjct: 415 APVPREVIVPIEPSRSAGLEQWLSGLRGAAVTIRVASRGDKKQLMDRANDNAKQALARSK 474 Query: 357 STEISHQMI----LKDFTKKFALPHIPKRIEIYDNSHIMG-CSAVGCMVVVGENGFVKNQ 411 + IS + D K L P RIE YD S+ +G V MVV + K++ Sbjct: 475 MSRISDMGARSDAMNDVAKALGLEQAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 534 Query: 412 YRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQL-------------------------IKN 445 YR+F + D + DD + + L RRF Sbjct: 535 YRRFAIRGADGQGALDDLSALYETLTRRFRHGNIAGDSGESMDNERRMATQNDRSDGTNG 594 Query: 446 EENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSA 505 E F P++V++DGGK Q+ AA L V++ + + +AK + Sbjct: 595 PETDAVQQNTNRRHFAYKPNLVVVDGGKPQVMAAAKALADCGVDD-VAVCGLAKRLE--- 650 Query: 506 GMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIG 564 E + ++L + +Y +QR+RDE+HRFAIT HR+ R+K A S LD+I GIG Sbjct: 651 --EVWVPDDDYPIILKRQSEGMYLLQRVRDESHRFAITYHRQTRRKGALRSALDDIPGIG 708 Query: 565 PLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615 ++ LL FG+V+ + +S E ++GI A IY H + P Sbjct: 709 EAYQKRLLNHFGSVRAMREASVEDFEQVKGIGHAKAENIYQALHSSVDIAP 759 >gi|119025857|ref|YP_909702.1| excinuclease ABC subunit C [Bifidobacterium adolescentis ATCC 15703] gi|118765441|dbj|BAF39620.1| excinuclease ABC subunit C [Bifidobacterium adolescentis ATCC 15703] Length = 745 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 89/305 (29%), Positives = 161/305 (52%), Gaps = 8/305 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +P PGVY+ D GRV+YVGKA NL+ R+ +Y R M+ ++ + Sbjct: 19 KTSDIPAQPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYQLHPRTQTMVLTARSLEW 78 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TE+E+L LE IK PRFN++ RDDK++PY+ I+ +IP ++ R Sbjct: 79 TVVGTELESLTLEYTWIKEFDPRFNVVFRDDKTYPYLAISSGERIPRVWVTRSRKRRDTR 138 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP+A V + ++++L +TF +R+C+ +VF RPCLL I +CS PC I + Sbjct: 139 YFGPYAKVWDLRHSLDALLKTFPVRTCSKNVFHKAQLTGRPCLLASIGKCSAPCVNRIGA 198 Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 +++ + ++G + ++ R+M QA+ + ++E A RD++ L + N Sbjct: 199 DEHRRMCEQLVGVMTGRIGKSYIAQLTRDMKQASAELEFEKAARLRDQIQMLGTVVQQNA 258 Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 +++ D F + ++ A + F G RG + ++ + ++A++++ + Q Sbjct: 259 VVFDSDVDADVFGIASDELEASVHAFFVRSGLIRGERNWSVERVEDVSDAELIADLITQV 318 Query: 294 YTDKP 298 Y++ Sbjct: 319 YSETT 323 Score = 246 bits (629), Expect = 6e-63, Method: Composition-based stats. Identities = 97/346 (28%), Positives = 156/346 (45%), Gaps = 38/346 (10%) Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P P +++ E ++ LE G V I V +G+K++++++A NA ++ + Sbjct: 380 APVPREVIVPIEPSRSAGLEQWLSGLRGAAVTIRVASRGDKKQLMDRANDNAKQALARSK 439 Query: 357 STEISHQMI----LKDFTKKFALPHIPKRIEIYDNSHIMG-CSAVGCMVVVGENGFVKNQ 411 + IS + D TK L P RIE YD S+ +G V MVV + K++ Sbjct: 440 MSRISDMGARSDAMNDVTKALGLEQAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 499 Query: 412 YRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQL-------------------------IKN 445 YR+F + D + DD + + L RRF Sbjct: 500 YRRFAIRGADGQGALDDLSALYETLTRRFRHGNIAGDSGESMDNERRMATQNDRSDGTNG 559 Query: 446 EENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSA 505 E F P++V++DGGK Q+ AA L V++ + + +AK + Sbjct: 560 PETDAVQQNTNRRHFAYKPNLVVVDGGKPQVMAAAKALADCGVDD-VAVCGLAKRLE--- 615 Query: 506 GMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIG 564 E + ++L + +Y +QR+RDE+HRFAIT HR+ R+K A S LD+I GIG Sbjct: 616 --EVWVPDDDYPIILKRQSEGMYLLQRVRDESHRFAITYHRQTRRKGALRSALDDIPGIG 673 Query: 565 PLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 ++ LL FG+V+ + +S E ++GI A IY H + Sbjct: 674 EAYQKRLLNHFGSVRAMREASVEDFEQVKGIGHAKAENIYQALHSS 719 >gi|329946769|ref|ZP_08294181.1| excinuclease ABC, C subunit [Actinomyces sp. oral taxon 170 str. F0386] gi|328526580|gb|EGF53593.1| excinuclease ABC, C subunit [Actinomyces sp. oral taxon 170 str. F0386] Length = 717 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 101/303 (33%), Positives = 152/303 (50%), Gaps = 7/303 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 ++P PGVY+ LD GRV+YVGKA NL++R+ SY R M++ + +TV Sbjct: 13 EIPTSPGVYRFLDGQGRVVYVGKAKNLRQRLSSYFQDLTALHPRTQKMVTTACAVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVE+L LE + IK PRFN++ +DDKS+PY+ +T P + R + YFG Sbjct: 73 STEVESLALEYSWIKEFNPRFNVMYKDDKSYPYLAVTMGETYPRVQVVRGARKPGTRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180 PF V ++ +T++ L R F +RSC+ VFR RPCLL I +CS PC G IS E + Sbjct: 133 PFVQVWSIRETVDQLLRVFPVRSCSAGVFRRAQASGRPCLLGYIDKCSAPCVGRISPEDH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + F++G ++ M A D+E A RD AL + N + Sbjct: 193 RALAEDFCAFMAGRTGPYLRQVEFEMKAAAAALDFEKAARLRDDAGALRKVIEGNAVVLP 252 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D F+L ++ A +Q G+ RG + + ++ +A+++ L Q Y Sbjct: 253 DATDADVFALVRDELEAAVQVFHVRGGRVRGQRGWVIDLIDDAGDAELIERLLEQVYASL 312 Query: 298 PCP 300 P Sbjct: 313 LDP 315 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 100/338 (29%), Positives = 154/338 (45%), Gaps = 35/338 (10%) Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P IL+ E + + KV + VPK+G+K ++ NA + + Sbjct: 382 VPREILVPEMPSNAATVRAWLEGLREGKVDLRVPKRGDKAALMGTVRKNAEEALRLHKTR 441 Query: 359 EI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + L + + LP P R+E YD SH G VG MVV + K+ YR+ Sbjct: 442 RAGDLTQRALALDELAEALDLPEAPLRVECYDISHTQGTYQVGSMVVFEDGAPRKSDYRR 501 Query: 415 FNLHPNDVKT-QDDCAMMRMVLERRFSQLIKNEENLN----------------------F 451 F + D DD A M VL RRF +LI + Sbjct: 502 FTVRGPDGNGATDDTAAMHEVLTRRFKRLIAEQGQGEAAIRVAEEVEDAEGVAVASGPID 561 Query: 452 HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF 511 + F P +V++DGG Q++AA+ VL +L+++ + +I +AK + E + Sbjct: 562 PETGRARRFSYAPGLVVVDGGLPQVNAARAVLDELSID--VPLIGLAKRLE-----EVWV 614 Query: 512 VKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRL 570 + ++L P LY +Q LRDE+HRFAIT HRK+R S LD I G+GP R+ Sbjct: 615 PGEEFPVILPRTSPALYLLQHLRDESHRFAITHHRKKRSSGMTRSVLDGIPGLGPARQTA 674 Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 LL+ FG+VK I ++ + + ++GI +A I H + Sbjct: 675 LLREFGSVKRIRQADVDDITRVKGIGPALAGSILAHLN 712 >gi|320531299|ref|ZP_08032275.1| excinuclease ABC subunit C [Actinomyces sp. oral taxon 171 str. F0337] gi|320136502|gb|EFW28474.1| excinuclease ABC subunit C [Actinomyces sp. oral taxon 171 str. F0337] Length = 718 Score = 263 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 99/303 (32%), Positives = 151/303 (49%), Gaps = 7/303 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 ++P PGVY+ LD GRV+YVGKA NL++R+ SY R M++ + +TV Sbjct: 13 EIPTSPGVYRFLDGQGRVIYVGKAKNLRQRLSSYFQDLAALHPRTQKMVTTACAVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVE+L LE + IK PRFN++ +DDKS+PY+ +T P + R + YFG Sbjct: 73 STEVESLALEYSWIKEFNPRFNVMYKDDKSYPYLAVTMGETHPRVQVVRGARKPGTRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180 PF ++ +T++ L R F +RSC+ VFR RPCLL I +CS PC G I+ E + Sbjct: 133 PFVQAWSIRETVDQLLRVFPVRSCSAGVFRRAQASGRPCLLGYIDKCSAPCVGRINPEDH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + F++G ++ M A D+E A RD AL + N + Sbjct: 193 RALAEDFCAFMAGRTGPYLRQVEAEMKAAAAALDFEKAARLRDDATALRKVIEGNAVVLP 252 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D F+L ++ A +Q G+ RG + + ++ +A+++ L Q Y Sbjct: 253 DATDADVFALVRDELEAAVQVFHVRGGRVRGQRGWVVDLIDDAGDAELIERLLEQVYASL 312 Query: 298 PCP 300 P Sbjct: 313 LDP 315 Score = 256 bits (655), Expect = 6e-66, Method: Composition-based stats. Identities = 100/338 (29%), Positives = 152/338 (44%), Gaps = 35/338 (10%) Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P IL+ E + + G KV + VP++G+K +++ NA + + Sbjct: 382 VPREILVPEMPSNAATVRAWLADLRGAKVDLRVPQRGDKAALMDTVRKNAEEALRLHKTR 441 Query: 359 EI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + L + + L P RIE YD SH G VG MVV + K YR+ Sbjct: 442 RAGDLTQRTLALDELAEALDLAEAPLRIECYDISHTQGTYQVGSMVVFEDGAPRKADYRR 501 Query: 415 FNLHPNDVKT-QDDCAMMRMVLERRFSQLIKNEE----------------------NLNF 451 F + D DD A M VL RRF +LI + Sbjct: 502 FTVRGQDGNGATDDTAAMHEVLTRRFKRLIAEQGQGEAAARAAEEIEDAEGIAVASGPID 561 Query: 452 HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF 511 + F P +V++DGG Q++AA+ VL +L ++ + +I +AK + E + Sbjct: 562 PETGKARRFSYAPGLVVVDGGLLQVNAARAVLDELGID--VPLIGLAKRLE-----EVWV 614 Query: 512 VKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRL 570 + ++L P LY +Q LRDE+HRFAIT HRK+R S LD I G+GP R+ Sbjct: 615 PGEEFPVILPRTSPALYLLQHLRDESHRFAITHHRKKRSAGMTRSVLDGIPGLGPARQAA 674 Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 LL+ FG+V I ++ + + I+GI +A I H + Sbjct: 675 LLREFGSVTRIRQAEVDDITRIKGIGPALAGTILAHLN 712 >gi|322411942|gb|EFY02850.1| excinuclease ABC subunit C [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 287 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 76/285 (26%), Positives = 132/285 (46%), Gaps = 9/285 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D G ++YVGKA NL+ R++SY ++ T + ++S+I + F Sbjct: 8 KLELLPDSPGCYLHKDKEGTIIYVGKAKNLKNRVRSYFRGSHDT-KTELLVSEIADFEFI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT + EALLLE N+I+ P++NI L+DDKS+P+I IT+ P L R G Y Sbjct: 67 VTESNTEALLLEINLIQENMPKYNIKLKDDKSYPFIKITN-ETFPRLLITRQIKKNDGLY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ + L R F + C + V + C + + +C + Sbjct: 126 FGPYPDSYTANEVKKLLDRIFPFKKCKNPVH----KVCFYYHLGQCCAHTICHTDKAYWD 181 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238 V + K FL+G + + + + M A+ + +E A +RD ++ ++ ++ + Sbjct: 182 GLVEDVKHFLNGKDDKIIDGLRAKMLAASEEMAFERAAEYRDLISGIATMRTKQRVMSKD 241 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNA 283 D F + +K C+Q F G+ +++ Sbjct: 242 LQDRDIFGYFVDKGWMCVQVFFVRQGKLIQRDVNLFPYYNDAEED 286 >gi|218663694|ref|ZP_03519624.1| excinuclease ABC subunit C [Rhizobium etli IE4771] Length = 301 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 122/205 (59%), Positives = 152/205 (74%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + G VLYVGKA +L+KR+ +Y H++RI M+ Q N+ F T Sbjct: 61 KRLPNSPGVYRMFNAEGDVLYVGKARSLKKRVGNYAVGRVHSNRIAQMVRQTANMEFVTT 120 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+LLRDDKSFPYILIT H+ PA++KHR + +G YFG Sbjct: 121 RTETEALLLEANLIKRLRPRFNVLLRDDKSFPYILITGDHRAPAIFKHRGARARKGDYFG 180 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 PFAS AV +TINSLQR F +R+C DSVF RTRPCLL+QIKRCSGPCT E+S E Y E Sbjct: 181 PFASAGAVGRTINSLQRAFLIRTCTDSVFETRTRPCLLYQIKRCSGPCTHEVSDEGYAEL 240 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQ 208 V EAK FLSG + +K +A MN+ Sbjct: 241 VQEAKDFLSGKSQKVKSHMAEAMNR 265 >gi|25900609|emb|CAD13168.1| UvrC protein [Mycoplasma agalactiae] Length = 526 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 131/577 (22%), Positives = 223/577 (38%), Gaps = 59/577 (10%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 GVY D VLYVGKA NL+KR+ Y ++++ + ++S + + + T EAL Sbjct: 1 GVYLWKDAKQNVLYVGKAKNLRKRLLQYFDGAINSYKTSKLMSLVADFEVYICKTNKEAL 60 Query: 71 LLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFAS 127 LLE M+ R P FNILL DD+ +PY+ + + R ++ Y+GPF S Sbjct: 61 LLEKAMVDRFNPEFNILLLDDRKYPYLKVQLLKDSLLITLSRKANAKDTKNTFYYGPFPS 120 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 + + L + +G S ++ + Sbjct: 121 GYGAKPILKL----------------------LQHEALYENGLLIKNKDSNFWVNQFTKI 158 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM---DC 244 K+ LS N+N + M+ A +E A+ RD L L ++ ++ D Sbjct: 159 KEILSFKNNNYLNDLTNKMHTAANNMQFELALFLRDGLTYLKKLKESQIIELSQYKNIDV 218 Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304 F+ ++ L F+ +G L + + + F QFY DK P+N + Sbjct: 219 FAYKTDEKLIYATVLFYRYGILINKVN--LTIPLGISIDESIRVFFEQFYADKILPDNFI 276 Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364 + EE + L S +K K+ + H +L S Sbjct: 277 VQEEILKYDLNLSSDYKFISPKIGTNKKVLDLALLNLNDYYEKEHLIMQNQLEKADSMLS 336 Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424 L + L I I+DNS++ + VG +V K+ YRKFNL ++ Sbjct: 337 SLNKYLNLPKLK----NIVIFDNSNVNNINPVGVAIVYTNGIKNKSLYRKFNLEALSYRS 392 Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484 D +R + + FS +++ D++I DGG Q++ A+ LK Sbjct: 393 -ADVDYIRQSITKFFSSDKNSKDF----------------DLIITDGGLQQVNEAKKTLK 435 Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY-FIQRLRDEAHRFAIT 543 L + I +I + K + + D L+ ++ +++ E RFA + Sbjct: 436 FLGL--NIPVIGLVKNEHHKTRA--LIDLNLNEIYV--NDLELHNYLAQIQIEVDRFAKS 489 Query: 544 THRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVK 579 R R+K + L I G+G ++ LL F + Sbjct: 490 HFRNRQKISSLEGKLRNIKGLGHNMEQKLLNHFKSYA 526 >gi|227496076|ref|ZP_03926385.1| possible excinuclease ABC subunit C [Actinomyces urogenitalis DSM 15434] gi|226834404|gb|EEH66787.1| possible excinuclease ABC subunit C [Actinomyces urogenitalis DSM 15434] Length = 333 Score = 261 bits (667), Expect = 3e-67, Method: Composition-based stats. Identities = 100/303 (33%), Positives = 155/303 (51%), Gaps = 7/303 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 ++P PGVY+ LD GRV+YVGKA NL+ R+ +Y R M++ + +TV Sbjct: 13 EIPTSPGVYRFLDGEGRVIYVGKAKNLRARLSNYFQDLAALHPRTQKMVTTACAVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVE+L LE + IK PRFN++ +DDKS+PY+ +T + P R + YFG Sbjct: 73 ATEVESLALEYSWIKEFNPRFNVMYKDDKSYPYLAVTMRDTYPRAQVVRGARKPGNRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180 PF V ++ +T++ L R F +RSC+ VF+ RPCLL I +CS PC G IS+ + Sbjct: 133 PFVQVWSIRETLDQLLRVFPVRSCSAGVFQRAHASGRPCLLGYIDKCSAPCVGRISAHDH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + F++G ++ M A D+E A RD AAL + N + Sbjct: 193 RALAEDLCSFMAGRTGPYLRQVEAEMKAAAAALDFEKAARLRDDAAALRKVIERNAVVLP 252 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D F+L ++ A +Q G+ RG + + ++++A+++ L+Q Y D Sbjct: 253 DATDADVFALVRDELTAAVQVFHVRGGRVRGQRGWVIDVVEDASDAELVERLLQQVYADL 312 Query: 298 PCP 300 P Sbjct: 313 VEP 315 >gi|311064421|ref|YP_003971146.1| excinuclease ABC subunit C [Bifidobacterium bifidum PRL2010] gi|310866740|gb|ADP36109.1| UvrC Excinuclease ABC subunit C [Bifidobacterium bifidum PRL2010] Length = 780 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 88/303 (29%), Positives = 155/303 (51%), Gaps = 8/303 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +P PGVY+ D GRV+YVGKA +L+ R+ +Y R M+ ++ + Sbjct: 51 KTGDIPAQPGVYKWRDGEGRVIYVGKAKSLRNRLANYFQPLYLLHPRTQTMVLTARSLEW 110 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TE+EAL LE IK PRFN+ RDDK++PY+ I+ +P ++ R Sbjct: 111 TVVGTELEALTLEYTWIKEFDPRFNVQFRDDKTYPYLAISSGEAVPRVWVTRSRKRRDAR 170 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP+A V + ++++ L RTF +R+C +VF RPCLL I +CS PC G I+ Sbjct: 171 YFGPYAKVWELRQSLDKLLRTFPVRTCTTNVFHKAELTGRPCLLASIGKCSAPCIGRIAP 230 Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 +++ + ++G + ++ R+M A+ + ++E A RD + L + N Sbjct: 231 KEHRRMCEQLVGVMTGRLGKSYIAQLTRDMKDASAELEFEKAARLRDEIQMLQTVMQQNA 290 Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 ++++ D F + ++ A + G RG + ++ + ++ +++ + Q Sbjct: 291 VVFDQDVDADVFGMASDELEASVHAFIVRDGSIRGERNWSVERVEDVSDGELIDDLIMQV 350 Query: 294 YTD 296 Y+D Sbjct: 351 YSD 353 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 96/350 (27%), Positives = 156/350 (44%), Gaps = 44/350 (12%) Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P P +++ E + LE G V I V +GEK+ ++ +A NA ++ + Sbjct: 435 APVPREVIVPVEPARRAELESWLSGLRGAVVTIRVASRGEKKALMNRANENAGQALQRSK 494 Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQ 411 + IS + D K L P RIE YD S+ + G V MVV + K++ Sbjct: 495 MSRISDMGTRTAAMNDVAKALGLAQAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 554 Query: 412 YRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLNFHPKKQ-------------- 456 YR+F + +D K DD + + L RRF ++ + ++ Sbjct: 555 YRRFAIRGDDGKGALDDLSALYETLTRRFRHGNIAGDSGDSMDNERRAESSDTSASTTTA 614 Query: 457 -----------------EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAK 499 + F P++V++DGG Q+ AA L V N + + +AK Sbjct: 615 SSPDGIRDAGVVQQNTNRHHFAYIPNLVVVDGGHPQVMAAAKALADCGV-NDVAVCGLAK 673 Query: 500 GPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLD 558 + E + ++L + +Y +QR+RDE+HRFAIT HR+ R+K A S LD Sbjct: 674 RLE-----EVWVPDDEYPIILKRQSEGMYLLQRVRDESHRFAITYHRQTRRKGALRSALD 728 Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I G+G ++ LL FG+V+ + +S E L +++GI A I+ H Sbjct: 729 GIPGVGETYQKRLLSHFGSVRAMRDASVEELEAVKGIGHAKAEAIHTALH 778 >gi|310287507|ref|YP_003938765.1| Excinuclease ABC subunit C [Bifidobacterium bifidum S17] gi|309251443|gb|ADO53191.1| Excinuclease ABC subunit C [Bifidobacterium bifidum S17] Length = 780 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 88/303 (29%), Positives = 155/303 (51%), Gaps = 8/303 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +P PGVY+ D GRV+YVGKA +L+ R+ +Y R M+ ++ + Sbjct: 51 KTGDIPAQPGVYKWRDGEGRVIYVGKAKSLRNRLANYFQPLYLLHPRTQTMVLTARSLEW 110 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TE+EAL LE IK PRFN+ RDDK++PY+ I+ +P ++ R Sbjct: 111 TVVGTELEALTLEYTWIKEFDPRFNVQFRDDKTYPYLAISSGEAVPRVWVTRSRKRRDAR 170 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP+A V + ++++ L RTF +R+C +VF RPCLL I +CS PC G I+ Sbjct: 171 YFGPYAKVWELRQSLDKLLRTFPVRTCTTNVFHKAELTGRPCLLASIGKCSAPCIGRIAP 230 Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 +++ + ++G + ++ R+M A+ + ++E A RD + L + N Sbjct: 231 KEHRRMCEQLVGVMTGRLGKSYIAQLTRDMKDASAELEFEKAARLRDEIQMLQTVMQQNA 290 Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 ++++ D F + ++ A + G RG + ++ + ++ +++ + Q Sbjct: 291 VVFDQDVDADVFGMASDELEASVHAFIVRDGSIRGERNWSVERVEDVSDGELIDDLIMQV 350 Query: 294 YTD 296 Y+D Sbjct: 351 YSD 353 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 96/350 (27%), Positives = 154/350 (44%), Gaps = 44/350 (12%) Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P P +++ E + LE G V I V +GEK+ ++ +A NA ++ + Sbjct: 435 APVPREVIVPVEPARRAELESWLSGLRGAVVAIRVASRGEKKALMNRANENAGQALQRSK 494 Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQ 411 + IS + D K L P RIE YD S+ + G V MVV + K++ Sbjct: 495 MSRISDMGTRTAAMNDVAKALGLAQAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 554 Query: 412 YRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLN-------------------- 450 YR+F + +D K DD + + L RRF ++ + Sbjct: 555 YRRFAIRGDDGKGALDDLSALYETLTRRFRHGNIAGDSGDCMDNERRAESSDTSASTTTA 614 Query: 451 -----------FHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAK 499 + F P++V++DGG Q+ AA L V N + + +AK Sbjct: 615 SSPDGIRDAGVVQQNTNRHHFAYIPNLVVVDGGHPQVMAAAKALADCGV-NDVAVCGLAK 673 Query: 500 GPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLD 558 + E + ++L + +Y +QR+RDE+HRFAIT HR+ R+K A S LD Sbjct: 674 RLE-----EVWVPDDEYPIILKRQSEGMYLLQRVRDESHRFAITYHRQTRRKGALRSALD 728 Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I G+G ++ LL FG+V+ + +S E L +++GI A I+ H Sbjct: 729 GIPGVGETYQKRLLSHFGSVRAMRDASVEELEAVKGIGHAKAEAIHTALH 778 >gi|25900601|emb|CAD13164.1| UvrC protein [Mycoplasma agalactiae] Length = 525 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 131/576 (22%), Positives = 223/576 (38%), Gaps = 59/576 (10%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 GVY D VLYVGKA NL+KR+ Y ++++ + ++S + + + T EAL Sbjct: 1 GVYLWKDAKQNVLYVGKAKNLRKRLLQYFDGAINSYKTSKLMSLVADFEVYICKTNKEAL 60 Query: 71 LLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFAS 127 LLE M+ R P FNILL DD+ +PY+ + + R ++ Y+GPF S Sbjct: 61 LLEKAMVDRFNPEFNILLLDDRKYPYLKVQLLKDSLLITLSRKANAKDTKNTFYYGPFPS 120 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 + + L + +G S ++ + Sbjct: 121 GYGAKPILKL----------------------LQHEALYENGLLIKNKDSNFWVNQFTKI 158 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM---DC 244 K+ LS N+N ++ M+ A +E A+ RD L L ++ ++ D Sbjct: 159 KEILSFKNNNYLNELTNKMHTAANNMQFELALFLRDGLTYLKKLKESQIIELSQYKNIDV 218 Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304 F+ ++ L F+ +G L + + + F QFY DK P+N + Sbjct: 219 FAYKTDEKLIYATVLFYRYGILINKVN--LTIPLGISIDESIRVFFEQFYADKILPDNFI 276 Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364 + EE + L + +K K+ + H +L S Sbjct: 277 VQEEILKYDLNLSNDYKFISPKIGTNKKVLDLALLNLNDYYEKEHLIMQNQLEKADSMLN 336 Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424 L + L I I+DNS+I + VG +V K+ YRKFNL ++ Sbjct: 337 SLNKYLSLPKLK----NIVIFDNSNINNINPVGVAIVYTNGIKNKSLYRKFNLEALSYRS 392 Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484 D +R + + FS ++ D++I DGG Q++ A+ LK Sbjct: 393 -ADVDYIRQSITKFFSSDKNTKDF----------------DLIITDGGLQQVNEAKKTLK 435 Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY-FIQRLRDEAHRFAIT 543 L + I +I + K + + D L+ ++ +++ E RFA + Sbjct: 436 FLGL--NIPVIGLVKNEYHKTRA--LIDLNLNEIYI--NDLELHNYLAQIQIEVDRFAKS 489 Query: 544 THRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTV 578 R R+K + L I G+G ++ LL F + Sbjct: 490 HFRNRQKISSLEGKLRNIKGLGHNMEQKLLNHFKSY 525 >gi|25900605|emb|CAD13166.1| UvrC protein [Mycoplasma agalactiae] Length = 525 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 131/576 (22%), Positives = 223/576 (38%), Gaps = 59/576 (10%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 GVY D VLYVGKA NL+KR+ Y ++++ + ++S + + + T EAL Sbjct: 1 GVYLWKDAKQNVLYVGKAKNLRKRLLQYFDGAINSYKTSKLMSLVADFEVYICKTNKEAL 60 Query: 71 LLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFAS 127 LLE M+ R P FNILL DD+ +PY+ + + R ++ Y+GPF S Sbjct: 61 LLEKAMVDRFNPEFNILLLDDRKYPYLKVQLLKDSLLITLSRKANAKDTKNTFYYGPFPS 120 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 + + L + +G S ++ + Sbjct: 121 GYGAKPILKL----------------------LQHEALYENGLLIKNKDSNFWVNQFTKI 158 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM---DC 244 K+ LS N+N ++ M+ A +E A+ RD L L ++ ++ D Sbjct: 159 KEILSFKNNNYLNELTNKMHTAANNMQFELALFLRDGLTYLKKLKESQIIELSQYKNIDV 218 Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304 F+ ++ L F+ +G L + + + F QFY DK P+N + Sbjct: 219 FAYKTDEKLIYATVLFYRYGDLINKVN--LTIPLGISIGESIRVFFEQFYADKILPDNFI 276 Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364 + EE + L + +K K+ + H +L S Sbjct: 277 VQEEILKYDLNLSNDYKFISPKIGTNKKVLDLALLNLNDYYEKEHLIMQNQLEKADSMLN 336 Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424 L + L I I+DNS+I + VG +V K+ YRKFNL ++ Sbjct: 337 SLNKYLSLPKLK----NIVIFDNSNINNINPVGVAIVYTNGIKNKSLYRKFNLEALSYRS 392 Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484 D +R + + FS ++ D++I DGG Q++ A+ LK Sbjct: 393 -ADVDYIRQSITKFFSSDKNTKDF----------------DLIITDGGLQQVNEAKKTLK 435 Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY-FIQRLRDEAHRFAIT 543 L + I +I + K + + D L+ ++ +++ E RFA + Sbjct: 436 FLGL--NIPVIGLVKNEYHKTRA--LIDLNLNEIYI--NDLELHNYLAQIQIEVDRFAKS 489 Query: 544 THRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTV 578 R R+K + L I G+G ++ LL F + Sbjct: 490 HFRNRQKISSLEGKLRNIKGLGHNMEQKLLNHFKSY 525 >gi|229817559|ref|ZP_04447841.1| hypothetical protein BIFANG_02822 [Bifidobacterium angulatum DSM 20098] gi|229785348|gb|EEP21462.1| hypothetical protein BIFANG_02822 [Bifidobacterium angulatum DSM 20098] Length = 768 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 86/304 (28%), Positives = 150/304 (49%), Gaps = 8/304 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +P PGVY+ D GRV+YVGKA NL+ R+ +Y R M+ ++ + Sbjct: 55 KTSDIPAEPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYQLHPRTQTMVLTARSLEW 114 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV +E+E+L LE IK PRFN+ +DDK++PY+ ++ P ++ R + Sbjct: 115 TVVGSELESLTLEYTWIKEFDPRFNVQFKDDKTYPYLAVSIGQDYPRVWVTRSRNRRDSR 174 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP+A V + ++++L RTF +R+C ++ F RPCLL I +CS PC G I Sbjct: 175 YFGPYAKVWPMRHSLDALLRTFPVRTCNNNAFHKAELTNRPCLLASIGKCSAPCVGRIGK 234 Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 ++ V + ++G + ++ R+M A+ ++E A RD + LS + N Sbjct: 235 AEHRRMVEQLVGVMTGRIGKSYIAQLTRDMKSASADLEFEKAARLRDEIQLLSTVVQSNA 294 Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 + + D F ++ A F G RG + ++ + +A +++ + + Sbjct: 295 VVMDDQVDADVFGFATDELEASAHVFFVRAGSIRGERNWSVERVEDIDDADLMADLMVRV 354 Query: 294 YTDK 297 Y + Sbjct: 355 YAES 358 Score = 241 bits (614), Expect = 4e-61, Method: Composition-based stats. Identities = 95/351 (27%), Positives = 155/351 (44%), Gaps = 41/351 (11%) Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P P +++ E +E G V I V +G+K++++++A NA ++ + Sbjct: 420 APVPREVIVPIEPNRREEIEQWLTDLRGGTVSIRVAVRGDKKQLMDRANENASQALQRAK 479 Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQ 411 + +S + + + L P RIE YD S+ + G V MVV + K++ Sbjct: 480 MSRVSDMGARTRAMNEVAEALGLEEAPLRIECYDISNTVGGAFQVASMVVFEDAVAKKSE 539 Query: 412 YRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIK-------------------------- 444 YR+F + +D K DD + + L RRF Sbjct: 540 YRRFAIRGDDGKGALDDLSALYETLTRRFRHGNIAGDSGESMEAERAVAGATGGTKAGQD 599 Query: 445 --NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPK 502 ++E F P++V++DGGK Q AA LK V + + + +AK + Sbjct: 600 GLDDEAEVVRQNPDRRHFAYKPNLVVVDGGKPQAMAAAKALKDCGVTD-VAVCGLAKRLE 658 Query: 503 RSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRK-RRKKAAYSPLDEIN 561 E + ++L + +Y +QR+RDE+HRFAIT HR+ RRK + S LD I Sbjct: 659 -----EVWVPDDDYPIILKRQSEGMYLLQRVRDESHRFAITYHRQMRRKGSLRSALDGIP 713 Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 GIG ++ LL FG+VK + +S E ++ GI A +Y+ H S Sbjct: 714 GIGEQYQKRLLAQFGSVKAMRSASVEDFEAVRGIGHAKAQALYDALHAGES 764 >gi|25900613|emb|CAD13170.1| UvrC protein [Mycoplasma agalactiae] Length = 527 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 135/578 (23%), Positives = 223/578 (38%), Gaps = 59/578 (10%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 GVY D VLYVGKA NL+KR+ Y ++++ + ++S + + + T EAL Sbjct: 1 GVYLWKDAKQNVLYVGKAKNLRKRLLQYFDGAINSYKTSKLMSLVADFEVYICKTNKEAL 60 Query: 71 LLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFAS 127 LLE M+ R P FNILL DD+ +PY+ + + R +T Y+GPF S Sbjct: 61 LLEKAMVDRFNPEFNILLLDDRKYPYLKVQLLKDSLLITLSRKVNTKYTKNTLYYGPFPS 120 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 + + LQ S G S ++ + Sbjct: 121 GYGAKPILKLLQHEALYES----------------------GLLIKNNDSSFWVNQFAKI 158 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM---DC 244 K+ LS N+N ++ M+ A +E A+ RD L L ++ ++ D Sbjct: 159 KEILSFKNNNYLNELTNKMHTAANNMQFELALFLRDGLTYLKKLKESQIIELSQYKNIDV 218 Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304 F+ ++ L F+ +G L + + + F QFY DK P+N + Sbjct: 219 FAYKTDEKLIYATVLFYRYGVLISKVN--LTIPLGISIDESIRVFFEQFYADKILPDNFI 276 Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364 + EE + L S +K K+ + H +L S Sbjct: 277 VQEEILKYDLNLSSDYKFISPKIGTNKKVLDLALLNLNDYYEKEHLIMQNQLEKADSMLS 336 Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424 L + L I I+DNS+I + VG +V K+ YRKFNL ++ Sbjct: 337 SLNKYLNLPKLK----NIVIFDNSNINNINPVGVAIVYTNGIKSKSLYRKFNLEALSYRS 392 Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484 D +R + + FS ++ D++I DGG Q++ A+ LK Sbjct: 393 -ADVDYIRQSITKFFSSDKNTKDF----------------DLIITDGGLQQVNEAKKTLK 435 Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY-FIQRLRDEAHRFAIT 543 L + I +I + K + + D L+ ++ +++ E RFA + Sbjct: 436 VLGI--NIPVIGLVKNEYHKTRA--LIDLNLNEIYV--NDLELHNYLAQIQIEVDRFAKS 489 Query: 544 THRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580 R R+K + L I G+G ++ LL F + Sbjct: 490 HFRNRQKISSLEGKLRNIKGLGHNMEQKLLNHFKSYAK 527 >gi|260910772|ref|ZP_05917425.1| excision endonuclease subunit UvrC [Prevotella sp. oral taxon 472 str. F0295] gi|260635116|gb|EEX53153.1| excision endonuclease subunit UvrC [Prevotella sp. oral taxon 472 str. F0295] Length = 456 Score = 260 bits (665), Expect = 5e-67, Method: Composition-based stats. Identities = 121/486 (24%), Positives = 218/486 (44%), Gaps = 42/486 (8%) Query: 143 FLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKI 202 + + + + CL + I C PC G+ + E Y E + +A++ L G +++ + Sbjct: 1 RFPITREGMEMGKYKTCLEYHIHNCDAPCVGKQTWENYQENIRQAREILKGNTREVRKML 60 Query: 203 ARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNL-----ACIQ 257 M + + +E A + R L + ++ + + ++ + A I Sbjct: 61 YEEMLKKAEELKFEEAEALKKRYILLDNYCAKSEVVSFSIADVDVFSITDDEFNRTAFIN 120 Query: 258 TCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEI 317 G + TF K + TN IL+ + + ++ E ++ E Sbjct: 121 YLHVKNGTVNQSFTFEYKRKLDETNQDILASAIPEIRERFDSKAKEIIVPFEMEWTMREA 180 Query: 318 SFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST------EISHQMILKDFTK 371 F VP++G+KR+++E + +N + +L E ++K+ Sbjct: 181 VFI----------VPQRGDKRRLLELSEMNGKQYKFDRLKQSEKLNPEQKAVRLMKELQT 230 Query: 372 KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMM 431 K +P +P +IE +DNS+I G AV VV K YRK+N+ V+ DD A M Sbjct: 231 KLQMPRMPYQIECFDNSNISGTDAVAGCVVFKAMKPSKKDYRKYNIKT--VEGPDDYASM 288 Query: 432 RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENR 491 + V+ RR++++I+ L PD++I DGGKGQ+S + V+ + Sbjct: 289 KEVVRRRYTRIIEEGTAL--------------PDLIITDGGKGQMSVVRDVVVG-ELHLD 333 Query: 492 ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK 551 I I +AK + E + + + L+++ + + + R++DE HR+AI+ HR +R K Sbjct: 334 IPIAGLAKDDRHRT-NELLYGWPPQVVGLDVKSELFHVLTRIQDEVHRYAISFHRDKRSK 392 Query: 552 -AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 A +S LD+I GIG K LL+ +VK I +S + LA+ I A ++NH+H+ Sbjct: 393 QALHSELDDIKGIGLKTKATLLKELKSVKQIKEASFDVLAA--HIGNAKAQIVFNHWHEQ 450 Query: 611 TSHTPT 616 T Sbjct: 451 KPSAAT 456 >gi|325068725|ref|ZP_08127398.1| excinuclease ABC, C subunit [Actinomyces oris K20] Length = 718 Score = 260 bits (664), Expect = 6e-67, Method: Composition-based stats. Identities = 99/303 (32%), Positives = 151/303 (49%), Gaps = 7/303 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 ++P PGVY+ LD GRV+YVGKA NL++R+ +Y R M++ + +TV Sbjct: 13 EIPTSPGVYRFLDGQGRVIYVGKAKNLRQRLSNYFQDLAALHPRTQKMVTTACAVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVE+L LE + IK PRFN++ +DDKS+PY+ +T P + R + YFG Sbjct: 73 STEVESLALEYSWIKEFNPRFNVMYKDDKSYPYLAVTMGETYPRVQVVRGARKPGTRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180 PF ++ +T+ L R F +RSC+ VFR RPCLL I +CS PC G IS + + Sbjct: 133 PFVQAWSIRETVEQLLRVFPVRSCSAGVFRRAQASGRPCLLGYIDKCSAPCVGRISPQDH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + F++G ++ M A D+E A RD AAL + N + Sbjct: 193 RALAEDFCAFMAGRTGPYLRQVEAEMKAAAAALDFEKAARLRDDAAALRKVIEGNAVVLP 252 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D F+L ++ A +Q G+ RG + + ++ +A+++ L Q Y Sbjct: 253 DATDADVFALVRDELEAAVQVFHVRGGRVRGQRGWVVDLIDDAGDAELIERLLEQVYASL 312 Query: 298 PCP 300 P Sbjct: 313 VDP 315 Score = 260 bits (664), Expect = 6e-67, Method: Composition-based stats. Identities = 99/338 (29%), Positives = 155/338 (45%), Gaps = 35/338 (10%) Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P+ IL+ E + + G KV + VP++G+K +++ NAH + + Sbjct: 382 VPKEILVPELPSNAATVRTWLAGLRGAKVDLRVPQRGDKAALMDTVRKNAHEALRLHKTR 441 Query: 359 EI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + L + + LP P R+E YD SH G VG MVV + K+ YR+ Sbjct: 442 RAGDLTQRALALDELAEALDLPEAPLRVECYDISHTQGTYQVGSMVVFEDGAPRKSDYRR 501 Query: 415 FNLHPNDVKTQDDC-AMMRMVLERRFSQLIKNEENLN----------------------F 451 F + D D A M VL RRF +LI + Sbjct: 502 FTVRGQDGSGAADDTAAMHEVLTRRFKRLIAEQGRGEAAARAAQEIEDVEGIAVVSGPID 561 Query: 452 HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF 511 + F P +V++DGG Q++AA+ VL +L ++ + +I +AK + E + Sbjct: 562 PETGKTRRFSYAPGLVVVDGGLPQVNAARTVLDELGID--VPLIGLAKRLE-----EVWV 614 Query: 512 VKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRL 570 + ++L P LY +Q LRDE+HRFAIT HRK+R S LD I G+GP R+ Sbjct: 615 PGEEFPVILPRTSPALYLLQHLRDESHRFAITHHRKKRSAGMTRSVLDGIPGLGPARQAA 674 Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 LL+ FG+V I ++ + + ++GI +A I H + Sbjct: 675 LLREFGSVTRIRQADVDDITRVKGIGPALAGTILAHLN 712 >gi|227496077|ref|ZP_03926386.1| possible excinuclease ABC subunit C [Actinomyces urogenitalis DSM 15434] gi|226834375|gb|EEH66758.1| possible excinuclease ABC subunit C [Actinomyces urogenitalis DSM 15434] Length = 332 Score = 260 bits (664), Expect = 6e-67, Method: Composition-based stats. Identities = 98/334 (29%), Positives = 156/334 (46%), Gaps = 35/334 (10%) Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI- 360 IL+ + + G KV++ VP++G+K +++ NA + + Sbjct: 1 EILVPVLPPDAEAVAAWLTGLRGAKVELRVPQRGDKAALMDTVRKNAEEALRLHKTRRAG 60 Query: 361 ---SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 L++ + F LP P R+E YD SH G VG MVV + K+ YR+F + Sbjct: 61 DLTQRSQALEELAQAFDLPEAPLRVECYDISHTQGTYQVGSMVVFEDGAPRKSDYRRFLI 120 Query: 418 HPNDVKT-QDDCAMMRMVLERRFSQLIKNEE----------------------NLNFHPK 454 D DD A M VL RRF +L+ + Sbjct: 121 RGQDGHGATDDTAAMHEVLTRRFKRLLAEQGQELSQEDAELVGEEGDGVALASGPIDPET 180 Query: 455 KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK 514 + F P +V++DGG Q++AA+ VL +L V+ + ++ +AK + E + + Sbjct: 181 GRARRFSYAPSLVVVDGGLPQVNAARAVLDELGVD--VPLVGLAKRLE-----EVWVPGE 233 Query: 515 GEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQ 573 ++L P LY +Q LRDE+HRFAIT HR +R K S LD+I G+GP R+ LL+ Sbjct: 234 EFPVILPRTSPALYLLQYLRDESHRFAITHHRSKRSKGMTRSVLDDIAGLGPARQAALLK 293 Query: 574 SFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 FG+VK + +S E ++ ++GI +A + H Sbjct: 294 EFGSVKRLREASVEQISQVKGIGPALAAAVAEHL 327 >gi|25900615|emb|CAD13171.1| UvrC protein [Mycoplasma agalactiae] Length = 526 Score = 260 bits (664), Expect = 6e-67, Method: Composition-based stats. Identities = 131/577 (22%), Positives = 222/577 (38%), Gaps = 59/577 (10%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 GVY D VLYVGKA NL+KR+ Y ++++ + ++S + + + T EAL Sbjct: 1 GVYLWKDAKQNVLYVGKAKNLRKRLLQYFDGAINSYKTSKLMSLVADFEVYICKTNKEAL 60 Query: 71 LLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFAS 127 LLE M+ R P FNILL DD+ +PY+ + + R ++ Y+GPF S Sbjct: 61 LLEKAMVDRFNPEFNILLLDDRKYPYLKVQLLKDSLLITLSRKANAKDTKNTFYYGPFPS 120 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 + + L + +G S ++ + Sbjct: 121 GYGAKPILKL----------------------LQHEALYENGLLIKNKDSSFWVNQFTKI 158 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM---DC 244 K+ LS N+N ++ M+ A +E A+ RD L L ++ ++ D Sbjct: 159 KEILSFKNNNYLNELTNKMHNAANNMQFELALFLRDGLTYLKKLKESQIIELSQYKNIDV 218 Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304 F+ ++ L F+ +G L + + + F QFY DK P+N + Sbjct: 219 FAYKTDEKLIYATVLFYRYGILINKVN--LTIPLGISIDESIRVFFEQFYADKIFPDNFI 276 Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364 + EE + L + +K K+ + H L S Sbjct: 277 VQEEVLKYDLNLSNDYKFISPKIGTNKKVLDLALLNLNDYYEKEHLIMQNHLEKADSMLS 336 Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424 L + L I I+DNS+I + VG +V K+ YRKFNL ++ Sbjct: 337 SLNKYLSLPKLK----NIVIFDNSNINNINPVGVAIVYTNGIKNKSLYRKFNLEALSYRS 392 Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484 D +R + + FS ++ D++I DGG Q++ A+ LK Sbjct: 393 -ADVDYIRQSITKFFSSDKNTKDF----------------DLIITDGGLQQVNEAKKTLK 435 Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY-FIQRLRDEAHRFAIT 543 L + I +I + K + + D L+ ++ +++ E RFA + Sbjct: 436 VLGI--NIPVIGLVKNEHHKTRA--LIDLNLNEIYV--NDLELHNYLAQIQIEVDRFAKS 489 Query: 544 THRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVK 579 R R+K + L I G+G ++ LL F + Sbjct: 490 HFRNRQKISSLEGKLRNIKGLGHNMEQKLLNHFKSYA 526 >gi|313140289|ref|ZP_07802482.1| nuclease subunit of the excinuclease complex [Bifidobacterium bifidum NCIMB 41171] gi|313132799|gb|EFR50416.1| nuclease subunit of the excinuclease complex [Bifidobacterium bifidum NCIMB 41171] Length = 794 Score = 260 bits (664), Expect = 6e-67, Method: Composition-based stats. Identities = 89/303 (29%), Positives = 155/303 (51%), Gaps = 8/303 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +P PGVY+ D GRV+YVGKA +L+ R+ +Y R M+ ++ + Sbjct: 65 KTGDIPAQPGVYKWRDGEGRVIYVGKAKSLRNRLTNYFQPLYLLHPRTQTMVLTARSLEW 124 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TE+EAL LE IK PRFN+ RDDK++PY+ I+ +P ++ R Sbjct: 125 TVVGTELEALTLEYTWIKEFDPRFNVQFRDDKTYPYLAISSGEAVPRVWVTRSRKRRDAR 184 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP+A V + ++++ L RTF +R+C SVF RPCLL I +CS PC G I+ Sbjct: 185 YFGPYAKVWELRQSLDKLLRTFPVRTCTTSVFHKAELTGRPCLLASIGKCSAPCIGRIAL 244 Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 +++ + ++G + ++ R+M A+ + ++E A RD + L + N Sbjct: 245 KEHRRMCEQLVGVMTGRLGKSYIAQLTRDMKDASAELEFEKAARLRDEIQMLQTVMQQNA 304 Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 ++++ D F + ++ A + G RG + ++ + ++ +++ + Q Sbjct: 305 VVFDQDVDADVFGMASDELEASVHAFIVRDGSIRGERNWSVERVEDVSDGELIDDLIMQV 364 Query: 294 YTD 296 Y+D Sbjct: 365 YSD 367 Score = 239 bits (610), Expect = 9e-61, Method: Composition-based stats. Identities = 96/352 (27%), Positives = 157/352 (44%), Gaps = 44/352 (12%) Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P P +++ E + LE G V I V +GEK+ ++++A NA ++ + Sbjct: 449 APVPREVIVPVEPARRAELESWLSGLRGAVVTIRVASRGEKKALMDRANENAGQALQRSK 508 Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQ 411 + IS + D K L P RIE YD S+ + G V MVV + K++ Sbjct: 509 MSRISDMGTRTAAMNDVAKALGLAQAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 568 Query: 412 YRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLNFHPKKQ-------------- 456 YR+F + +D K DD + + L RRF ++ + ++ Sbjct: 569 YRRFAIRGDDGKGALDDLSALYETLTRRFRHGNIAGDSGDSMDNERRAESSDTSASTTTA 628 Query: 457 -----------------EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAK 499 + F P++V++DGG Q+ AA L V N + + +AK Sbjct: 629 SSPDGIRDAGVVQQNTNRHHFAYIPNLVVVDGGHPQVMAAAKALADCGV-NDVAVCGLAK 687 Query: 500 GPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLD 558 + E + ++L + +Y +QR+RDE+HRFAIT HR+ R+K A S LD Sbjct: 688 RLE-----EVWVPDDEYPIILKRQSEGMYLLQRVRDESHRFAITYHRQTRRKGALRSALD 742 Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I G+G ++ LL FG+V+ + +S E L +++GI A I+ H Sbjct: 743 GIPGVGETYQKRLLSHFGSVRAMRDASVEELEAVKGIGHAKAEAIHTALHAE 794 >gi|224283140|ref|ZP_03646462.1| excinuclease ABC subunit C [Bifidobacterium bifidum NCIMB 41171] Length = 780 Score = 260 bits (664), Expect = 6e-67, Method: Composition-based stats. Identities = 89/303 (29%), Positives = 155/303 (51%), Gaps = 8/303 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +P PGVY+ D GRV+YVGKA +L+ R+ +Y R M+ ++ + Sbjct: 51 KTGDIPAQPGVYKWRDGEGRVIYVGKAKSLRNRLTNYFQPLYLLHPRTQTMVLTARSLEW 110 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TE+EAL LE IK PRFN+ RDDK++PY+ I+ +P ++ R Sbjct: 111 TVVGTELEALTLEYTWIKEFDPRFNVQFRDDKTYPYLAISSGEAVPRVWVTRSRKRRDAR 170 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP+A V + ++++ L RTF +R+C SVF RPCLL I +CS PC G I+ Sbjct: 171 YFGPYAKVWELRQSLDKLLRTFPVRTCTTSVFHKAELTGRPCLLASIGKCSAPCIGRIAL 230 Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 +++ + ++G + ++ R+M A+ + ++E A RD + L + N Sbjct: 231 KEHRRMCEQLVGVMTGRLGKSYIAQLTRDMKDASAELEFEKAARLRDEIQMLQTVMQQNA 290 Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 ++++ D F + ++ A + G RG + ++ + ++ +++ + Q Sbjct: 291 VVFDQDVDADVFGMASDELEASVHAFIVRDGSIRGERNWSVERVEDVSDGELIDDLIMQV 350 Query: 294 YTD 296 Y+D Sbjct: 351 YSD 353 Score = 239 bits (610), Expect = 9e-61, Method: Composition-based stats. Identities = 96/352 (27%), Positives = 157/352 (44%), Gaps = 44/352 (12%) Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P P +++ E + LE G V I V +GEK+ ++++A NA ++ + Sbjct: 435 APVPREVIVPVEPARRAELESWLSGLRGAVVTIRVASRGEKKALMDRANENAGQALQRSK 494 Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQ 411 + IS + D K L P RIE YD S+ + G V MVV + K++ Sbjct: 495 MSRISDMGTRTAAMNDVAKALGLAQAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 554 Query: 412 YRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLNFHPKKQ-------------- 456 YR+F + +D K DD + + L RRF ++ + ++ Sbjct: 555 YRRFAIRGDDGKGALDDLSALYETLTRRFRHGNIAGDSGDSMDNERRAESSDTSASTTTA 614 Query: 457 -----------------EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAK 499 + F P++V++DGG Q+ AA L V N + + +AK Sbjct: 615 SSPDGIRDAGVVQQNTNRHHFAYIPNLVVVDGGHPQVMAAAKALADCGV-NDVAVCGLAK 673 Query: 500 GPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLD 558 + E + ++L + +Y +QR+RDE+HRFAIT HR+ R+K A S LD Sbjct: 674 RLE-----EVWVPDDEYPIILKRQSEGMYLLQRVRDESHRFAITYHRQTRRKGALRSALD 728 Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I G+G ++ LL FG+V+ + +S E L +++GI A I+ H Sbjct: 729 GIPGVGETYQKRLLSHFGSVRAMRDASVEELEAVKGIGHAKAEAIHTALHAE 780 >gi|25900599|emb|CAD13163.1| UvrC protein [Mycoplasma agalactiae] gi|25900607|emb|CAD13167.1| UvrC protein [Mycoplasma agalactiae] Length = 526 Score = 260 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 135/577 (23%), Positives = 223/577 (38%), Gaps = 59/577 (10%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 GVY D VLYVGKA NL+KR+ Y ++++ + ++S + + + T EAL Sbjct: 1 GVYLWKDAKQNVLYVGKAKNLRKRLLQYFDGAINSYKTSKLMSLVADFEVYICKTNKEAL 60 Query: 71 LLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFAS 127 LLE M+ R P FNILL DD+ +PY+ + + R +T Y+GPF S Sbjct: 61 LLEKAMVDRFNPEFNILLLDDRKYPYLKVQLLKDSLLITLSRKVNTKYTKNTLYYGPFPS 120 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 + + LQ S G S ++ + Sbjct: 121 GYGAKPILKLLQHEALYES----------------------GLLIKNNDSSFWVNQFAKI 158 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM---DC 244 K+ LS N+N ++ M+ A +E A+ RD L L ++ ++ D Sbjct: 159 KEILSFKNNNYLNELTNKMHTAANNMQFELALFLRDGLTYLKKLKESQIIELSQYKNIDV 218 Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304 F+ ++ L F+ +G L + + + F QFY DK P+N + Sbjct: 219 FAYKTDEKLIYATVLFYRYGVLISKVN--LTIPLGISIDESIRVFFEQFYADKILPDNFI 276 Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364 + EE + L S +K K+ + H +L S Sbjct: 277 VQEEILKYDLNLSSDYKFISPKIGTNKKVLDLALLNLNDYYEKEHLIMQNQLEKADSMLS 336 Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424 L + L I I+DNS+I + VG +V K+ YRKFNL ++ Sbjct: 337 SLNKYLNLPKLK----NIVIFDNSNINNINPVGVAIVYTNGIKSKSLYRKFNLEALSYRS 392 Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484 D +R + + FS ++ D++I DGG Q++ A+ LK Sbjct: 393 -ADVDYIRQSITKFFSSDKNTKDF----------------DLIITDGGLQQVNEAKKTLK 435 Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY-FIQRLRDEAHRFAIT 543 L + I +I + K + + D L+ ++ +++ E RFA + Sbjct: 436 VLGI--NIPVIGLVKNEYHKTRA--LIDLNLNEIYV--NDLELHNYLAQIQIEVDRFAKS 489 Query: 544 THRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVK 579 R R+K + L I G+G ++ LL F + Sbjct: 490 HFRNRQKISSLEGKLRNIKGLGHNMEQKLLNHFKSYA 526 >gi|326773403|ref|ZP_08232686.1| excinuclease ABC subunit C [Actinomyces viscosus C505] gi|326636633|gb|EGE37536.1| excinuclease ABC subunit C [Actinomyces viscosus C505] Length = 718 Score = 260 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 99/303 (32%), Positives = 152/303 (50%), Gaps = 7/303 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 ++P PGVY+ LD GRV+YVGKA NL++R+ +Y R M++ + +TV Sbjct: 13 EIPTSPGVYRFLDGQGRVIYVGKAKNLRQRLSNYFQDLAALHPRTQKMVTTACAVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVE+L LE + IK PRFN++ +DDKS+PY+ +T P + R + YFG Sbjct: 73 STEVESLALEYSWIKEFNPRFNVMYKDDKSYPYLAVTMGETYPRVQVVRGARKPGTRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180 PF ++ +T+ L R F +RSC+ VFR RPCLL I +CS PC G IS++ + Sbjct: 133 PFVQAWSIRETVEQLLRVFPVRSCSAGVFRRAQASGRPCLLGYIDKCSAPCVGRISAQDH 192 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239 + F++G ++ M A D+E A RD AAL + N + Sbjct: 193 RALAEDFCAFMAGRTGPYLRQVEAEMKAAAAALDFEKAARLRDDAAALRKVIEGNAVVLP 252 Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D F+L ++ A +Q G+ RG + + ++ +A+++ L Q Y Sbjct: 253 DATDADVFALVRDELEAAVQVFHVRGGRVRGQRGWVVDLIDDAGDAELIERLLEQVYASL 312 Query: 298 PCP 300 P Sbjct: 313 VDP 315 Score = 256 bits (654), Expect = 8e-66, Method: Composition-based stats. Identities = 97/344 (28%), Positives = 154/344 (44%), Gaps = 35/344 (10%) Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P+ IL+ E + + G KV + VP++G+K +++ NA + + Sbjct: 382 VPKEILVPELPSNAATVRTWLAGLRGAKVDLRVPQRGDKAALMDTVRKNAQEALRLHKTR 441 Query: 359 EI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + L + + LP P R+E YD SH G VG MVV + K+ YR+ Sbjct: 442 RAGDLTQRALALDELAEALDLPEAPLRVECYDISHTQGTYQVGSMVVFEDGAPRKSDYRR 501 Query: 415 FNLHPNDVKTQDDC-AMMRMVLERRFSQLIKNEENLN----------------------F 451 F + D D A M VL RRF +LI + Sbjct: 502 FTVRGQDGSGAADDTAAMHEVLTRRFKRLIAEQGRGEAAARAAQEIEDVEGIAVASGPID 561 Query: 452 HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF 511 + F P +V++DGG Q++AA+ VL +L ++ + +I +AK + E + Sbjct: 562 PETGKARRFSYAPGLVVVDGGLPQVNAARTVLDELGID--VPLIGLAKRLE-----EVWV 614 Query: 512 VKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRL 570 + ++L P LY +Q LRDE+HRFAIT HRK+R S LD G+GP R+ Sbjct: 615 PGEEFPVILPRTSPALYLLQHLRDESHRFAITHHRKKRSAGMTRSVLDGTPGLGPARQAA 674 Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 LL+ FG+V I ++ + + ++GI +A I H + + Sbjct: 675 LLREFGSVARIRQADVDDITRVKGIGPALAGSILAHLNSPATEQ 718 >gi|88861288|ref|ZP_01135919.1| excinuclease ABC subunit C [Pseudoalteromonas tunicata D2] gi|88816667|gb|EAR26491.1| excinuclease ABC subunit C [Pseudoalteromonas tunicata D2] Length = 396 Score = 260 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 121/414 (29%), Positives = 194/414 (46%), Gaps = 26/414 (6%) Query: 206 MNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCFSLYHNKNLACIQTCFFHF 263 M +A+L ++E A RD++ L +Q N MD L + Sbjct: 1 MEKASLALNFELAAKIRDQILLLRKMQEQQSVSGNFAEMDVIGYQTKNGLTAVHLLMIRD 60 Query: 264 GQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSEEAEETSLLEISF 319 + G+ TFF K +S + +ILS F+ Q+Y + I+L +T +L + Sbjct: 61 HKILGSNTFFPKIPKDSIDDEILSSFIAQYYLSVGRSSRIAKEIILPFAIADTEVLNAAI 120 Query: 320 FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP 379 + KV + ++GE+ + +E A NA S K S + S AL Sbjct: 121 SQVADKKVHLKAVQRGERAEYLELANKNALNSILTKQSAQDSINKRYAALKSALALD-EI 179 Query: 380 KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRF 439 R+E +D SH MG + V VV G K +YR++N+ + DD A M L++R+ Sbjct: 180 NRMECFDISHTMGENTVASCVVFDGQGPNKKEYRRYNVKG--ITGGDDYAAMAFALKKRY 237 Query: 440 SQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAK 499 ++ PDVV +DGGKGQLS A+ +E + ++ +AK Sbjct: 238 GKMTD---------------VTKVPDVVFIDGGKGQLSQAEHFFSTWTLEKQPLLVGVAK 282 Query: 500 GPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPL 557 G R AG+E + G + L+ L+ IQ +RDE+HRFAI HR +R+K S L Sbjct: 283 GVSRKAGLETLLIDAGRKTINLSADSIALHLIQHIRDESHRFAIAGHRNKRQKQRNQSVL 342 Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 +EI +G R++ +L+ G ++ + +S L + GIS+++A KI+NH H + Sbjct: 343 EEIPNVGQKRRQAILKFLGGMQGVLGASISQLEKVPGISQELAEKIFNHLHDKS 396 >gi|25900593|emb|CAD13160.1| UvrC protein [Mycoplasma agalactiae PG2] Length = 526 Score = 260 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 135/577 (23%), Positives = 223/577 (38%), Gaps = 59/577 (10%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 GVY D VLYVGKA NL+KR+ Y ++++ + ++S + + + T EAL Sbjct: 1 GVYLWKDAKQNVLYVGKAKNLRKRLLQYFDGAINSYKTSKLMSLVADFEVYICKTNKEAL 60 Query: 71 LLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFAS 127 LLE M+ R P FNILL DD+ +PY+ + + R +T Y+GPF S Sbjct: 61 LLEKAMVDRFNPEFNILLLDDRKYPYLKVQLLKDSLLITLSRKVNTKYTKNTLYYGPFPS 120 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 + + LQ S G S ++ + Sbjct: 121 GYGAKPILKLLQHEALYES----------------------GLLIKNNDSSFWVNQFAKI 158 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM---DC 244 K+ LS N+N ++ M+ A +E A+ RD L L ++ ++ D Sbjct: 159 KEILSFKNNNYLNELTNKMHTAANNMQFELALFLRDGLTYLKKLKESQIIELSQYKNIDV 218 Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304 F+ ++ L F+ +G L + + + F QFY DK P+N + Sbjct: 219 FAYKTDEKLIYATVLFYRYGVLINKVN--LTIPLGISIDESIRVFFEQFYADKILPDNFI 276 Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364 + EE + L S +K K+ + H +L S Sbjct: 277 VQEEILKYDLNLSSDYKFISPKIGTNKKVLDLALLNLNDYYEKEHLIMQNQLEKADSMLS 336 Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424 L + L I I+DNS+I + VG +V K+ YRKFNL ++ Sbjct: 337 SLNKYLNLPKLK----NIVIFDNSNINNINPVGVAIVYTNGIKNKSLYRKFNLEALSYRS 392 Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484 D +R + + FS ++ D++I DGG Q++ A+ LK Sbjct: 393 -ADVDYIRQSITKFFSSDKNTKDF----------------DLIITDGGLQQVNEAKKTLK 435 Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY-FIQRLRDEAHRFAIT 543 L + I +I + K + + D L+ ++ +++ E RFA + Sbjct: 436 VLGI--NIPVIGLVKNEYHKTRA--LIDLNLNEIYV--NDLELHNYLAQIQIEVDRFAKS 489 Query: 544 THRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVK 579 R R+K + L I G+G ++ LL F + Sbjct: 490 HFRNRQKISSLEGKLRNIKGLGHNMEQKLLNHFKSYA 526 >gi|291456764|ref|ZP_06596154.1| excinuclease ABC subunit C [Bifidobacterium breve DSM 20213] gi|291382041|gb|EFE89559.1| excinuclease ABC subunit C [Bifidobacterium breve DSM 20213] Length = 805 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 87/304 (28%), Positives = 156/304 (51%), Gaps = 8/304 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +P PGVY+ D GRV+YVGKA NL+ R+ +Y R M+ ++ + Sbjct: 56 KTSDIPAKPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYLLHPRTQTMVLTARSLEW 115 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TE+E+L LE IK PRFN+ RDDK++PY+ ++ ++P ++ R Sbjct: 116 TVVATELESLTLEYTWIKEFDPRFNVQFRDDKTYPYLAVSTGEQVPRVWVTRSRKRRDTR 175 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP+A V + +++ L RTF +R+C +VF RPCLL I +CS PC +I + Sbjct: 176 YFGPYAKVWELRHSLDRLLRTFPVRTCTTNVFHKAQLTGRPCLLASIGKCSAPCVNQIEA 235 Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 +++ + ++G ++ R+M +A+ + ++E A RD++ L + N Sbjct: 236 DEHRRLCEQLVGVMTGRLGRPYIAQLTRDMKEASAELEFEKAARLRDQIQMLETVVQQNA 295 Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 ++++ D F ++ A + + G RG + ++ + + +++ L Q Sbjct: 296 VVFDQDVDADVFGFASDELEASVHAFYVRAGSIRGERNWSVERVEDIADTDLMADLLVQV 355 Query: 294 YTDK 297 Y+D+ Sbjct: 356 YSDE 359 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 100/366 (27%), Positives = 162/366 (44%), Gaps = 58/366 (15%) Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P P I++ E + LE Q G V I V +G+K++++++A NA+++ + Sbjct: 446 APVPREIIVPIEPSRRAELESWLTDQRGGAVTIRVASRGDKKQLMDRANENANQALQRSK 505 Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQ 411 + IS + D K L P RIE YD S+ + G V MVV + K++ Sbjct: 506 MSRISDMGARTQAMNDVAKALGLNQAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 565 Query: 412 YRKFNLHPNDVKT-QDDCAMMRMVLERRFS----------------QLIKNEENLNF--- 451 YR+F++ D + DD + + L RRF + K E+ Sbjct: 566 YRRFSIRGKDGQGAVDDLSALYETLTRRFKHGNIAGDSGESIDAEQRAAKAEQQQEQSVS 625 Query: 452 --------------------------HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 + F P++V++DGGK Q+ AA LK Sbjct: 626 DANGTSSTTPAAITDASSFADSSEVVQQNTNRHHFAYKPNLVVVDGGKPQVMAAAKALKD 685 Query: 486 LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545 V++ + + +AK + E + ++L + +Y +QR+RDE+HRFAIT H Sbjct: 686 CGVDD-VAVCGLAKRLE-----EVWVPDDDYPIILKRQSEGMYLLQRVRDESHRFAITYH 739 Query: 546 RKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 R++R+K A S LDEI GIG ++ LL FG+VK + +S E ++G+ A +Y Sbjct: 740 RQQRRKGALRSALDEIPGIGESYQKRLLNHFGSVKAMRMASVEDFEQVKGVGHAKAEALY 799 Query: 605 NHFHKN 610 H Sbjct: 800 AALHDE 805 >gi|25900595|emb|CAD13161.1| UvrC protein [Mycoplasma agalactiae] Length = 526 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 133/577 (23%), Positives = 223/577 (38%), Gaps = 59/577 (10%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 GVY D VLYVGKA NL+KR+ Y ++++ + ++S + + + T EAL Sbjct: 1 GVYLWKDAKQNVLYVGKAKNLRKRLLQYFDGAINSYKTSKLMSLVADFEVYICKTNKEAL 60 Query: 71 LLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFAS 127 LLE M+ R P FNILL DD+ +PY+ + + R +T Y+GPF S Sbjct: 61 LLEKAMVDRFNPEFNILLLDDRKYPYLKVQLLKDSLLITLSRKVNTKYTKNTFYYGPFPS 120 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 + + L + +G S ++ + Sbjct: 121 GYGAKPILKL----------------------LQHEALYENGLLIKNQDSSFWVNQFAKI 158 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM---DC 244 K+ LS N+N ++ M+ A +E A+ RD L L ++ ++ D Sbjct: 159 KEILSFKNNNYLNELTNKMHTAANNMQFELAMFLRDGLTYLKKLKESQIIELSQYKNIDV 218 Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304 F+ ++ L F+ +G L + + + F QFY DK P+N + Sbjct: 219 FAYKTDEKLIYATVLFYRYGILINKVN--LTIPLGISIDESIRVFFEQFYADKILPDNFI 276 Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364 + EE + L S +K K+ + H +L S Sbjct: 277 VQEEILKYDLNLSSNYKFISPKIGTNKKVLDLALLNLNDYYEKEHLIMQNQLEKADSMLS 336 Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424 L + L I I+DNS+I + VG +V K+ YRKFNL ++ Sbjct: 337 SLNKYLNLSKLK----NIVIFDNSNINNINPVGVAIVYTNGIKNKSLYRKFNLEALSYRS 392 Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484 D +R + + FS ++ D++I DGG Q++ A+ LK Sbjct: 393 -ADVDYIRQSITKFFSSDKNTKDF----------------DLIITDGGLQQVNEAKKTLK 435 Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY-FIQRLRDEAHRFAIT 543 L + I +I + K + + D L+ ++ +++ E RFA + Sbjct: 436 FLGL--NIPVIGLVKNEHHKTRA--LIDLNLNEIYV--NDLELHNYLAQIQIEVDRFAKS 489 Query: 544 THRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVK 579 R R+K + L I G+G ++ LL F + Sbjct: 490 HFRNRQKISSLEGKLRNIKGLGHNMEQKLLNYFKSYA 526 >gi|25900597|emb|CAD13162.1| UvrC protein [Mycoplasma agalactiae] gi|25900603|emb|CAD13165.1| UvrC protein [Mycoplasma agalactiae] Length = 526 Score = 258 bits (660), Expect = 2e-66, Method: Composition-based stats. Identities = 133/577 (23%), Positives = 223/577 (38%), Gaps = 59/577 (10%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 GVY D VLYVGKA NL+KR+ Y ++++ + ++S + + + T EAL Sbjct: 1 GVYLWKDAKQNVLYVGKAKNLRKRLLQYFDGAINSYKTSKLMSLVADFEVYICKTNKEAL 60 Query: 71 LLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFAS 127 LLE M+ R P FNILL DD+ +PY+ + + R +T Y+GPF S Sbjct: 61 LLEKAMVDRFNPEFNILLLDDRKYPYLKVQLLKDSLLITLSRKVNTKYTKNTFYYGPFPS 120 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 + + L + +G S ++ + Sbjct: 121 GYGAKPILKL----------------------LQHEALYENGLLIKNQDSSFWVNQFAKI 158 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM---DC 244 K+ LS N+N ++ M+ A +E A+ RD L L ++ ++ D Sbjct: 159 KEILSFKNNNYLNELTNKMHTAANNMQFELALFLRDGLTYLKKLKESQIIELSQYKNIDV 218 Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304 F+ ++ L F+ +G L + + + F QFY DK P+N + Sbjct: 219 FAYKTDEKLIYATVLFYRYGILINKVN--LTIPLGISIDESIRVFFEQFYADKILPDNFI 276 Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364 + EE + L S +K K+ + H +L S Sbjct: 277 VQEEILKYDLNLSSNYKFISPKIGTNKKVLDLALLNLNDYYEKEHLIMQNQLEKADSMLS 336 Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424 L + L I I+DNS+I + VG +V K+ YRKFNL ++ Sbjct: 337 SLNKYLNLSKLK----NIVIFDNSNINNINPVGVAIVYTNGIKNKSLYRKFNLEALSYRS 392 Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484 D +R + + FS ++ D++I DGG Q++ A+ LK Sbjct: 393 -ADVDYIRQSITKFFSSDKNTKDF----------------DLIITDGGLQQVNEAKKTLK 435 Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY-FIQRLRDEAHRFAIT 543 L + I +I + K + + D L+ ++ +++ E RFA + Sbjct: 436 FLGL--NIPVIGLVKNEHHKTRA--LIDLNLNEIYV--NDLELHNYLAQIQIEVDRFAKS 489 Query: 544 THRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVK 579 R R+K + L I G+G ++ LL F + Sbjct: 490 HFRNRQKISSLEGKLRNIKGLGHNMEQKLLNYFKSYA 526 >gi|25900611|emb|CAD13169.1| UvrC protein [Mycoplasma agalactiae] Length = 526 Score = 258 bits (660), Expect = 2e-66, Method: Composition-based stats. Identities = 133/577 (23%), Positives = 223/577 (38%), Gaps = 59/577 (10%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 GVY D VLYVGKA NL+KR+ Y ++++ + ++S + + + T EAL Sbjct: 1 GVYLWKDAKQNVLYVGKAKNLRKRLLQYFDGAINSYKTSKLMSLVADFEVYICKTNKEAL 60 Query: 71 LLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFAS 127 LLE M+ R P FNILL DD+ +PY+ + + R +T Y+GPF S Sbjct: 61 LLEKAMVDRFNPEFNILLLDDRKYPYLKVQLLKDSLLITLSRKVNTKYTKNTLYYGPFPS 120 Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 + + LQ S G S ++ + Sbjct: 121 GYGAKPILKLLQHEALYES----------------------GLLIKNNDSSFWVNQFAKI 158 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM---DC 244 K+ LS N+N ++ M+ A +E A+ RD L L ++ ++ D Sbjct: 159 KEILSFKNNNYLNELTNKMHTAANNMQFELALFLRDGLTYLKKLKESQIIELSQYKNIDV 218 Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304 F+ ++ L F+ +G L + + + F QFY DK P+N + Sbjct: 219 FAYKTDEKLIYATVLFYRYGVLISKVN--LTIPLGISIDESIRVFFEQFYADKILPDNFI 276 Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364 + E+ + L S +K K+ + H +L S Sbjct: 277 VQEKILKYDLNLSSDYKFISPKIGTNKKVLDLALLNLNDYYEKEHLIMQNQLEKADSMLS 336 Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424 L + L I I+DNS+I + VG +V K+ YRKFNL ++ Sbjct: 337 SLNKYLNLPKLK----NIVIFDNSNINNINPVGVAIVYTNGIKSKSLYRKFNLEALSYRS 392 Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484 D +R + + F+ ++ D++I DGG Q++ A+ LK Sbjct: 393 -ADVDYIRQSITKFFNSDKNTKDF----------------DLIITDGGLQQVNEAKKTLK 435 Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY-FIQRLRDEAHRFAIT 543 L + I +I + K + + D L+ ++ +++ E RFA + Sbjct: 436 VLGI--NIPVIGLVKNEYHKTRA--LIDLNLNEIYV--NDLELHNYLAQIQIEVDRFAKS 489 Query: 544 THRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVK 579 R R+K + L I G+G ++ LL F + Sbjct: 490 HFRNRQKISSLEGKLRNIKGLGHNMEQKLLNHFKSYA 526 >gi|315302791|ref|ZP_07873557.1| excinuclease ABC subunit C [Listeria ivanovii FSL F6-596] gi|313628837|gb|EFR97204.1| excinuclease ABC subunit C [Listeria ivanovii FSL F6-596] Length = 388 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 108/413 (26%), Positives = 185/413 (44%), Gaps = 39/413 (9%) Query: 215 YESAIIHRDRLAALSHIQNHNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCT 271 +E A RD++ A+ N D F +K C+Q F G+ Sbjct: 1 FEKAGEFRDQINAIETTMEKQKMTMNDFLDRDVFGYAIDKGWMCVQVFFIRQGKLIERDV 60 Query: 272 FFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITV 331 +++ + T+ P+ I L ++ + ++ + KI V Sbjct: 61 SQFPFYNDADEDFLTFIGQFYQKTNHIPPKEIYLPDDVDSEAVQAVVP------DTKIIV 114 Query: 332 PKQGEKRKIIEQALINAHRSHTQKLS----TEISHQMILKDFTKKFALPHIPKRIEIYDN 387 P++G K+ +++ A NA + +K E ++ + +P R+E +DN Sbjct: 115 PQRGNKKDLVKLAYKNAKIALNEKFMLLERNEERTVGAVERLGEAMGIPTPS-RVEAFDN 173 Query: 388 SHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE 447 S+I G V MV + KN YRK+ + V+ DD A MR V+ RR+ +++K Sbjct: 174 SNIHGTDPVSAMVTFLDGKPSKNDYRKYKIKT--VEGPDDYATMREVIRRRYWRVLKEG- 230 Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL-KKLNVENRITIISIAKGPKRSAG 506 PD++++DGGKGQ+ +A+ VL +L ++ I + +AK K Sbjct: 231 -------------LPMPDLILIDGGKGQIDSAKDVLTNELGLD--IPVAGLAKDDKHRTS 275 Query: 507 MEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGP 565 F E + L Y +QR++DE HRFAIT HR+ R K S LD I G+GP Sbjct: 276 Q-LLFGDPLEIIPLERNSQEFYLLQRMQDEVHRFAITFHRQLRSKTGFQSILDGIPGVGP 334 Query: 566 LRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH---FHKNTSHTP 615 RK+ LL+ FG++K + +S + G+ +A +++ H F++ ++T Sbjct: 335 GRKKKLLKHFGSMKKLKEASISEIKEA-GVPLNVAEEVHKHITAFNEKANNTE 386 >gi|213854703|ref|ZP_03382943.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 331 Score = 257 bits (657), Expect = 3e-66, Method: Composition-based stats. Identities = 109/343 (31%), Positives = 178/343 (51%), Gaps = 27/343 (7%) Query: 271 TFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSEEAEETSLLEISFFKQYGYK 326 ++F K + +++ F+ QFY + P ILL + +LL S + G + Sbjct: 2 SYFPKVPGGTELGEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRR 61 Query: 327 VKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYD 386 + + +G++ + ++ A NA + KLS + + L LP I R+E +D Sbjct: 62 IHVQTKPRGDRARYLKLARTNAATALVTKLSQQSTITQRLTALATVLKLPAIK-RMECFD 120 Query: 387 NSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNE 446 SH MG V VV NG ++ +YR++N+ + DD A M VL RR+ + I+ Sbjct: 121 ISHTMGEQTVASCVVFDANGPLRAEYRRYNI--AGITPGDDYAAMNQVLRRRYGKAIEES 178 Query: 447 ENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNV---ENRITIISIAKGPKR 503 + PDV+++DGGKGQL+ A+ V +L+V ++R ++ +AKG R Sbjct: 179 K---------------IPDVILIDGGKGQLAQAKAVFAELDVPWDKHRPLLLGVAKGADR 223 Query: 504 SAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEIN 561 AG+E F +GE L P L+ IQ +RDE+H AI HRK+R K S L+ I Sbjct: 224 KAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSTLETIE 283 Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 G+GP R+++LL+ G ++ + +S E +A + GIS+ +A KI+ Sbjct: 284 GVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIF 326 >gi|261337408|ref|ZP_05965292.1| excinuclease ABC subunit C [Bifidobacterium gallicum DSM 20093] gi|270277793|gb|EFA23647.1| excinuclease ABC subunit C [Bifidobacterium gallicum DSM 20093] Length = 841 Score = 257 bits (656), Expect = 4e-66, Method: Composition-based stats. Identities = 96/303 (31%), Positives = 161/303 (53%), Gaps = 8/303 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRF 60 + Q+P PGVY+ D GRV+YVGKA NL+ R+ +Y + R M+ ++ + Sbjct: 50 KTSQIPAEPGVYKWRDGQGRVIYVGKAKNLRNRLSNYFQPLHQLHPRTQTMVLTARSLEW 109 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TE+EAL LE IK PRFN++ RDDK++PY+ ++ +I + R Sbjct: 110 TVVGTELEALTLEYTWIKEFDPRFNVVFRDDKTYPYLAVSVGERIARTWVTRSRKRRDTR 169 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP+A V + K++++L RTF +R+C +VF+ RPCLL I +CS PC G IS+ Sbjct: 170 YFGPYAKVWDLRKSLDTLLRTFPVRTCTPAVFKKAQLTNRPCLLASIGKCSAPCVGRISA 229 Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + + + V + L+G + + R M QA+ ++E A RD++ L ++ N Sbjct: 230 QDHRQLVSQLVGVLTGRIGQSYIADLTRQMKQASQDLEFEKAARLRDQIGMLRNVAQQNA 289 Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 + ++ D F + ++ A + F G RG + ++ + ++A +L+ + Q Sbjct: 290 VVLDQDVDADVFGIASDELEASVHAFFVRGGSIRGERNWSVERIEDVSDADLLADLIVQA 349 Query: 294 YTD 296 Y+ Sbjct: 350 YSQ 352 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 97/359 (27%), Positives = 161/359 (44%), Gaps = 48/359 (13%) Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P P +L+ LE G V I VP++G K+ ++++A NA ++ + Sbjct: 476 APIPREVLVPLLPTRADELERWLSSMRGSAVSIRVPQRGSKKDLMQRAQDNASQALQRSK 535 Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQ 411 + IS + D + L P RIE YD S+ + G V MVV + K++ Sbjct: 536 MSRISDMAARTEAMNDVAQALGLAEAPLRIECYDISNTVGGAYQVASMVVFEDAMAKKSE 595 Query: 412 YRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQ----------------------------- 441 YR+F + +D K DD + + L RRF Sbjct: 596 YRRFAIRGDDGKGALDDLSALYETLTRRFRHGNIAGDTGESIDNERRVRDQQASQDQNRQ 655 Query: 442 ------LIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITII 495 + ++ F P+++++DGG Q+ AA L V++ + + Sbjct: 656 SDGDDGMQSSDGPSTVQQNTDRRHFAYKPNLIVVDGGYPQVLAAAKALHDCGVDD-VAVC 714 Query: 496 SIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRK-RRKKAAY 554 +AK + E + ++L + +Y +QR+RDE+HRFAIT HR+ RRK A Sbjct: 715 GLAKRLE-----EVWVPDDDYPIILKRQSEGMYLLQRVRDESHRFAITYHRQARRKGALR 769 Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 S LD+I GIGP ++ LL FG+V+ + ++S E L +++G+ K A I++ H + S Sbjct: 770 SVLDDIPGIGPSYQKKLLAHFGSVRAMRQASLEDLEAVKGVGKAKAKSIFDALHAHDSD 828 >gi|238809581|dbj|BAH69371.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 550 Score = 256 bits (655), Expect = 6e-66, Method: Composition-based stats. Identities = 127/585 (21%), Positives = 228/585 (38%), Gaps = 64/585 (10%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PG+Y D +V+YVGKA NL+KR+ Y ++++ + ++ +I + Sbjct: 10 LKNVSTAPGIYLWKDKNDQVIYVGKAKNLRKRMHQYFEGAINSYKTSRLVEEIRAYEVFI 69 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS-- 120 T EALLLE I + P +NILL DD+ +PY+ + + + R + Sbjct: 70 CKTNKEALLLEKLYIDKYNPEYNILLLDDRRYPYLKVQLSDRGLDISLSRKIGKKNETNK 129 Query: 121 --YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 YFGPF + + L+R F G + Sbjct: 130 LFYFGPFPIGYGSIQILKLLEREAFYE----------------------KGLKIKNNDPK 167 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237 + E ++ K LS +++ +I M + E +E A + L + Sbjct: 168 FWQEKFNKIKSILSFKDNSYINEIKEKMFKEAETEHFELARDLKLSWEYLKKLNEEQIIE 227 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 + +D F+ N+ + F+ G L D + + L F ++Y Sbjct: 228 LKDIHNLDVFAYKTVDNIIYMTILFYRSGLLINKDNQALNIDIDE--IETLEKFFNKYYE 285 Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH--- 352 +K P+ IL+ E+ + I PK G+K++++E A +N Sbjct: 286 NKIKPDEILVEEKINNL-------NLNLDENLNIVTPKIGDKKRVLEIAQLNLEEYFSKE 338 Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412 + + H +++ + KK K I ++DNS++ + VG +V KN Y Sbjct: 339 HLLIKNKNDHALLMLEEFKKLIKIDSLKNIILFDNSNLANSNPVGVAIVYSNGLKNKNLY 398 Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472 RKFN H + + D M+ +++ FS ++ D++I+DGG Sbjct: 399 RKFN-HIDIYSREADVEYMKESIKKYFSSADNKKDF----------------DLIIVDGG 441 Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532 Q+ A+ VL L++ +I I+ + K + + +L F+ Sbjct: 442 LAQIHEAKKVLFDLDI--KIPIVGLVKDDFHRTRALIDLQENLVKI---KNKDLLNFLAS 496 Query: 533 LRDEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFG 576 ++ E RFA + R R R L I G+G + LL + Sbjct: 497 MQIEVDRFAKSHLRNRNRITTFEGSLQSIKGLGKCAETKLLNTLK 541 >gi|325523988|gb|EGD02183.1| excinuclease ABC subunit C [Burkholderia sp. TJI49] Length = 457 Score = 256 bits (654), Expect = 7e-66, Method: Composition-based stats. Identities = 103/341 (30%), Positives = 169/341 (49%), Gaps = 18/341 (5%) Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 A++L F+ Q Y P +++S LLE+ +Q G+KV + QG++R + Sbjct: 121 EAEVLDAFIAQHYLGNRVPPVLVVSHAPASRDLLELL-SEQAGHKVSLVRQPQGQRRAWL 179 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTKK---FALPHIPKRIEIYDNSHIMGCSAVGC 398 A NA + + LS + S Q + + RIE +D SH MG + Sbjct: 180 SMAEQNAQIALARLLSEQGSQQARTRALAETLGFECDDLATLRIECFDISHTMGEATQAS 239 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449 VV + +YR++N+ + DD A MR VL RR+ ++++ + Sbjct: 240 CVVYHHHKMQSGEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEQAAQAAAADDAAGI 297 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 + +Q + P++V++DGGKGQ+ A+ V +L ++ + ++ +AKG R G+E Sbjct: 298 DGESTRQAEASRLLPNIVLIDGGKGQVEIARQVFTELGLDTSM-LVGVAKGEGRKVGLET 356 Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567 L L L + ++RDEAHRFAIT R +R KA S L+E+ G+G R Sbjct: 357 LVFADSRTPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKARQTSRLEELEGVGAKR 416 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LL FG ++ + +S E LAS++GIS +A +IY H Sbjct: 417 RQRLLARFGGLRGVVAASVEELASVDGISHALAEQIYRQLH 457 >gi|330944503|gb|EGH46489.1| excinuclease ABC subunit C [Pseudomonas syringae pv. pisi str. 1704B] Length = 213 Score = 256 bits (654), Expect = 9e-66, Method: Composition-based stats. Identities = 92/211 (43%), Positives = 133/211 (63%), Gaps = 1/211 (0%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D +LYVGKA NL+KR+ SY H + ++S+I I T+T E EALLLE Sbjct: 1 MFDAEATLLYVGKAKNLKKRLASYFRKTGHAPKTGALVSRIAQIETTITGNETEALLLEQ 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 +IK +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S A+ ++ Sbjct: 61 TLIKEWRPPYNILLRDDKSYPYVFLSDN-AFPRLSIHRGTKKAKGRYFGPYPSAGAIRES 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194 ++ LQ+TF +R C DS F++RTRPCL +QIKRC GPC G + E Y E V + FL G Sbjct: 120 LSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSVMFLEGR 179 Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRL 225 ++ L +++ +M +A + D+E A RD++ Sbjct: 180 SNALSDELNASMEKAAMALDFERAAELRDQV 210 >gi|167816741|ref|ZP_02448421.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 91] Length = 388 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 18/341 (5%) Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 ++L F+ Q Y P +++S L+++ +Q G+KV + QG+KR + Sbjct: 52 ETEVLEAFIAQHYLGNRVPPVLVVSHAPANRELIDLLV-EQAGHKVAVVRQPQGQKRAWL 110 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398 A NA + + LS + S Q + + RIE +D SH MG + Sbjct: 111 TMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 170 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449 VV + ++YR++N+ + DD A MR VL RR+ ++++ + Sbjct: 171 CVVYHHHRMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 228 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 + + S P+VV++DGG+GQ+ A+ V +L ++ + ++ +AKG R G+E Sbjct: 229 DGNAVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 287 Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567 G L L L + ++RDEAHRFAIT R +R K S L+E+ G+G R Sbjct: 288 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 347 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LL FG ++ + +S + LAS+EGIS+ +A +IY H Sbjct: 348 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 388 >gi|167895232|ref|ZP_02482634.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 7894] Length = 396 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 18/341 (5%) Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 ++L F+ Q Y P +++S L+++ +Q G+KV + QG+KR + Sbjct: 60 ETEVLEAFIAQHYLGNRVPPVLVVSHAPANRELIDLLV-EQAGHKVAVVRQPQGQKRAWL 118 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398 A NA + + LS + S Q + + RIE +D SH MG + Sbjct: 119 TMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 178 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449 VV + ++YR++N+ + DD A MR VL RR+ ++++ + Sbjct: 179 CVVYHHHRMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 236 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 + + S P+VV++DGG+GQ+ A+ V +L ++ + ++ +AKG R G+E Sbjct: 237 DGNAVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 295 Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567 G L L L + ++RDEAHRFAIT R +R K S L+E+ G+G R Sbjct: 296 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 355 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LL FG ++ + +S + LAS+EGIS+ +A +IY H Sbjct: 356 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 396 >gi|167846645|ref|ZP_02472153.1| excinuclease ABC, C subunit [Burkholderia pseudomallei B7210] Length = 394 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 18/341 (5%) Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 ++L F+ Q Y P +++S L+++ +Q G+KV + QG+KR + Sbjct: 58 ETEVLEAFIAQHYLGNRVPPVLVVSHAPANRELIDLLV-EQAGHKVAVVRQPQGQKRAWL 116 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398 A NA + + LS + S Q + + RIE +D SH MG + Sbjct: 117 TMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 176 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449 VV + ++YR++N+ + DD A MR VL RR+ ++++ + Sbjct: 177 CVVYHHHRMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 234 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 + + S P+VV++DGG+GQ+ A+ V +L ++ + ++ +AKG R G+E Sbjct: 235 DGNAVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 293 Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567 G L L L + ++RDEAHRFAIT R +R K S L+E+ G+G R Sbjct: 294 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 353 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LL FG ++ + +S + LAS+EGIS+ +A +IY H Sbjct: 354 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 394 >gi|167739539|ref|ZP_02412313.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 14] Length = 383 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 18/341 (5%) Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 ++L F+ Q Y P +++S L+++ +Q G+KV + QG+KR + Sbjct: 47 ETEVLEAFIAQHYLGNRVPPVLVVSHAPANRELIDLLV-EQAGHKVAVVRQPQGQKRAWL 105 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398 A NA + + LS + S Q + + RIE +D SH MG + Sbjct: 106 TMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 165 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449 VV + ++YR++N+ + DD A MR VL RR+ ++++ + Sbjct: 166 CVVYHHHRMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 223 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 + + S P+VV++DGG+GQ+ A+ V +L ++ + ++ +AKG R G+E Sbjct: 224 DGNAVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 282 Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567 G L L L + ++RDEAHRFAIT R +R K S L+E+ G+G R Sbjct: 283 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 342 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LL FG ++ + +S + LAS+EGIS+ +A +IY H Sbjct: 343 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 383 >gi|167903617|ref|ZP_02490822.1| excinuclease ABC, C subunit [Burkholderia pseudomallei NCTC 13177] Length = 394 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 18/341 (5%) Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 ++L F+ Q Y P +++S L+++ +Q G+KV + QG+KR + Sbjct: 58 ETEVLEAFIAQHYLGNRVPPVLVVSHAPANRELIDLLV-EQAGHKVAVVRQPQGQKRAWL 116 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398 A NA + + LS + S Q + + RIE +D SH MG + Sbjct: 117 TMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 176 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449 VV + ++YR++N+ + DD A MR VL RR+ ++++ + Sbjct: 177 CVVYHHHRMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 234 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 + + S P+VV++DGG+GQ+ A+ V +L ++ + ++ +AKG R G+E Sbjct: 235 DGNAVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 293 Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567 G L L L + ++RDEAHRFAIT R +R K S L+E+ G+G R Sbjct: 294 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 353 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LL FG ++ + +S + LAS+EGIS+ +A +IY H Sbjct: 354 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 394 >gi|167720547|ref|ZP_02403783.1| excinuclease ABC, C subunit [Burkholderia pseudomallei DM98] Length = 366 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 18/341 (5%) Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 ++L F+ Q Y P +++S L+++ +Q G+KV + QG+KR + Sbjct: 30 ETEVLEAFIAQHYLGNRVPPVLVVSHAPANRELIDLLV-EQAGHKVAVVRQPQGQKRAWL 88 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398 A NA + + LS + S Q + + RIE +D SH MG + Sbjct: 89 TMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 148 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449 VV + ++YR++N+ + DD A MR VL RR+ ++++ + Sbjct: 149 CVVYHHHRMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 206 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 + + S P+VV++DGG+GQ+ A+ V +L ++ + ++ +AKG R G+E Sbjct: 207 DGNAVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 265 Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567 G L L L + ++RDEAHRFAIT R +R K S L+E+ G+G R Sbjct: 266 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 325 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LL FG ++ + +S + LAS+EGIS+ +A +IY H Sbjct: 326 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 366 >gi|167619247|ref|ZP_02387878.1| excinuclease ABC, C subunit [Burkholderia thailandensis Bt4] Length = 397 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 100/341 (29%), Positives = 169/341 (49%), Gaps = 18/341 (5%) Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341 ++L F+ Q Y P +++S L+++ +Q G+KV + QG+KR + Sbjct: 61 ETEVLEAFIAQHYLGNRVPPILVVSHAIANRELIDLLV-EQAGHKVALVRQPQGQKRAWL 119 Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398 A NA + + LS + S Q + + RIE +D SH MG + Sbjct: 120 AMAEQNARLALARLLSEQGSQQARARSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 179 Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449 VV + ++YR++N+ + DD A MR VL RR+ ++++ + Sbjct: 180 CVVYHHHKMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 237 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 + + S P++V++DGG+GQ+ A+ V +L ++ + ++ +AKG R G+E Sbjct: 238 DGNAVHAAASAGRLPNIVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 296 Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567 G L L L + ++RDEAHRFAIT R +R K S L+E+ G+G R Sbjct: 297 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 356 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ LL FG ++ + +S + LAS+EGIS+ +A +IY H Sbjct: 357 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 397 >gi|212715858|ref|ZP_03323986.1| hypothetical protein BIFCAT_00764 [Bifidobacterium catenulatum DSM 16992] gi|212661225|gb|EEB21800.1| hypothetical protein BIFCAT_00764 [Bifidobacterium catenulatum DSM 16992] Length = 716 Score = 255 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 89/303 (29%), Positives = 160/303 (52%), Gaps = 8/303 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +P PGVY+ D GRV+YVGKA NL+ R+ +Y R M+ ++ + Sbjct: 19 KTSDIPAQPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYQLHPRTQTMVLTARSLEW 78 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TE+E+L LE IK PRFN++ RDDK++PY+ I+ +P ++ R Sbjct: 79 TVVGTELESLTLEYTWIKEFDPRFNVVFRDDKTYPYLAISSAEHVPRVWVTRSRKRRDTR 138 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP+A V + +++ L +TF +R+C+ +V+ RPCLL I +CS PC G IS+ Sbjct: 139 YFGPYAKVWDLRHSLDRLLKTFPVRTCSQNVYHKAEVTRRPCLLASIGKCSAPCVGRISA 198 Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 ++ + + L+G + ++ R M +A+ + ++E A RD++ LS + N Sbjct: 199 AEHRKMCEQLVGVLTGRIGKSYIAQLTREMKEASAELEFEKAARLRDQIQMLSTVVEQNA 258 Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 +++ D F + ++ A + + G RG + ++ + T+ ++++ + Q Sbjct: 259 VVFDSDVDADFFGVESDELEASVHAFYVRAGSIRGERNWSVERVEDVTDEELIADLIVQV 318 Query: 294 YTD 296 Y++ Sbjct: 319 YSE 321 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 93/343 (27%), Positives = 154/343 (44%), Gaps = 32/343 (9%) Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P P +++ E LE G V I +G K++++++A NA ++ + Sbjct: 380 SPVPREVIVPIEPARREELESWLSGLRGGAVNIRTASRGGKKQLLDRANDNARQAMQRSK 439 Query: 357 STEISHQMI----LKDFTKKFALPHIPKRIEIYDNSHIMG-CSAVGCMVVVGENGFVKNQ 411 IS + D K L P RIE YD S+ +G V MVV + K++ Sbjct: 440 MNRISDMGARTTAMNDVAKALGLEQAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 499 Query: 412 YRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLI-------------------KNEENLNF 451 YR+F + D + DD + + L RRF + E + Sbjct: 500 YRRFAIRGADGQGALDDLSALYETLTRRFRHGNIAGDSGESMDNERRASEQGEQVEKPSV 559 Query: 452 HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF 511 + F P++V++DGGK Q+ AA L+ V++ + + +AK + E + Sbjct: 560 QQNVDRHHFAYKPNLVVVDGGKPQVMAAAKALEDCGVDD-VAVCGLAKRLE-----EVWV 613 Query: 512 VKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRL 570 ++L + +Y +QR+RDE+HRFAIT HR+ R+K A S LD+I G+G ++ Sbjct: 614 PDDDYPIILKRQSEGMYLLQRVRDESHRFAITYHRQTRRKGALRSALDDIPGVGETYQKR 673 Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 LL FG+V+ + ++ E ++G+ K A IY H Sbjct: 674 LLNHFGSVRAMREANAEDFEQVKGVGKAKAEAIYQALHARDGQ 716 >gi|225352081|ref|ZP_03743104.1| hypothetical protein BIFPSEUDO_03691 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157328|gb|EEG70667.1| hypothetical protein BIFPSEUDO_03691 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 767 Score = 255 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 91/303 (30%), Positives = 161/303 (53%), Gaps = 8/303 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +P PGVY+ D GRV+YVGKA NL+ R+ +Y R M+ N+ + Sbjct: 53 KTSDIPAQPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYQLHPRTQTMVLTARNLEW 112 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TE+E+L LE IK PRFN++ RDDK++PY+ I+ ++P ++ R Sbjct: 113 TVVGTELESLTLEYTWIKEFDPRFNVVFRDDKTYPYLAISSGERVPRVWVTRSRKRRDTR 172 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT---RPCLLFQIKRCSGPCTGEISS 177 YFGP+A V + +++ L +TF +R+C+ +V+ RPCLL I +CS PC G IS Sbjct: 173 YFGPYAKVWDLRHSLDRLLKTFPVRTCSQNVYHKAEITHRPCLLASIGKCSAPCIGRISV 232 Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 E++ + + L+G + ++ R M +A+ + ++E A RD++ LS + N Sbjct: 233 EEHRKMCEQLIGVLTGRIGKSYIAQLTREMKEASDELEFEKAARLRDQIQMLSTVGEQNA 292 Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 +++ D F + ++ A + + G RG + ++ + T+ ++++ + Q Sbjct: 293 VVFDSDVDADFFGVDSDELEASVHAFYVRAGSIRGERNWSVERVEDVTDEELIADLIVQV 352 Query: 294 YTD 296 Y++ Sbjct: 353 YSE 355 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 95/346 (27%), Positives = 159/346 (45%), Gaps = 32/346 (9%) Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P P +++ E LE G V I V +G+KR+++++A NA ++ + Sbjct: 414 SPVPREVIVPIEPARREELESWLSGLRGGAVSIRVASRGDKRRLLDRANDNAKQAMQRSK 473 Query: 357 STEISHQMI----LKDFTKKFALPHIPKRIEIYDNSHIMG-CSAVGCMVVVGENGFVKNQ 411 + IS + D K L P RIE YD S+ +G V MVV + K++ Sbjct: 474 MSRISDMGARSTAMNDVAKALGLEQAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 533 Query: 412 YRKFNLHPNDVKTQ-DDCAMMRMVLERRF----------------SQLIKNEE---NLNF 451 YR+F + D + DD + + L RRF + ++ + Sbjct: 534 YRRFAIRGADGQGALDDLSALYETLTRRFQHGNIAGDSGESMDNERRASEHGDQTHEPTV 593 Query: 452 HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF 511 + F P++V++DGGK Q+ AA L+ V++ + + +AK + E + Sbjct: 594 QQNTNRHHFAYKPNLVVVDGGKPQVMAAAKALEDCGVDD-VAVCGLAKRLE-----EVWV 647 Query: 512 VKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRL 570 ++L + +Y +QR+RDE+HRFAIT HR+ R+K A S LD+I G+G ++ Sbjct: 648 PDDDYPIILKRQSEGMYLLQRVRDESHRFAITYHRQTRRKGALRSALDDIPGVGEAYQKR 707 Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616 LL FG+V+ + + E ++G+ K A IY H + T Sbjct: 708 LLSHFGSVRAMREADVEDFEQVKGVGKAKAAAIYQALHAHDGQPST 753 >gi|213857576|ref|ZP_03384547.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 219 Score = 255 bits (650), Expect = 3e-65, Method: Composition-based stats. Identities = 92/210 (43%), Positives = 134/210 (63%), Gaps = 2/210 (0%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI +I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N IK +PR+N+LLRDDKS+P+I ++ P L HR + +G YF Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GPF + AV +T+ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC +S E+Y Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYT 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATL 211 + V + FLSG + + ++ M +A+ Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQ 219 >gi|195941240|ref|ZP_03086622.1| UvrC excinuclease ABC subunit C [Escherichia coli O157:H7 str. EC4024] Length = 318 Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats. Identities = 108/330 (32%), Positives = 173/330 (52%), Gaps = 27/330 (8%) Query: 284 QILSYFLRQFYTD----KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRK 339 +++ F+ QFY + P ILL + +LL S + G K+ + +G++ + Sbjct: 2 EVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRAR 61 Query: 340 IIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCM 399 ++ A NA + T KLS + + L LP + R+E +D SH MG V Sbjct: 62 YLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASC 120 Query: 400 VVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS 459 VV NG ++ +YR++N+ + DD A M VL RR+ + I + + Sbjct: 121 VVFDANGPLRAEYRRYNI--TGITPGDDYAAMNQVLRRRYGKAIDDSK------------ 166 Query: 460 FPSWPDVVILDGGKGQLSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKG 515 PDV+++DGGKGQL+ A+ V +L+V +N ++ +AKG R AG+E F +G Sbjct: 167 ---IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEG 223 Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQS 574 E L P L+ IQ +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ Sbjct: 224 EGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKY 283 Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIY 604 G ++ + +S E +A + GIS+ +A KI+ Sbjct: 284 MGGLQGLRNASVEEIAKVPGISQGLAEKIF 313 >gi|308235009|ref|ZP_07665746.1| excinuclease ABC subunit C [Gardnerella vaginalis ATCC 14018] Length = 743 Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats. Identities = 91/320 (28%), Positives = 161/320 (50%), Gaps = 8/320 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +P PGVY+ D G+V+YVGKA +L+ R+ +Y N R M+ ++ + Sbjct: 60 KTSDIPNQPGVYKWRDEKGKVIYVGKAKSLRNRLSNYFQPLNQLHPRTQSMVLTARSLEW 119 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TE+EAL LE IK PRFN++ +DDK++PY+ ++ P ++ R+ ++ Sbjct: 120 TVVNTELEALTLEYTWIKEFNPRFNVVFKDDKTYPYLAVSVNDDFPRVWITRNRNSKSTR 179 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISS 177 YFGP+A V + +++SL +TF +R+C SVF RPCLL I +CS PC ++ Sbjct: 180 YFGPYAKVWQLRHSLDSLLKTFPVRTCRQSVFVKAHKTGRPCLLAAIGKCSAPCIAKVDR 239 Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + + V + L+G + + R M +++ D+E+A RD++ + N Sbjct: 240 KTHRHNVEQLVGVLTGSIGDSYINDLTREMKESSDNLDFENAAKIRDKINIFKIVMQQNS 299 Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 +++ D F + AC+ F G RG + ++ + +NA I++ L + Sbjct: 300 VVFDENVEADVFGFSGDSLEACVHAFFVREGLLRGEKNWQVERSEDISNADIIANLLMRV 359 Query: 294 YTDKPCPENILLSEEAEETS 313 Y++ N+ + + Sbjct: 360 YSEYESNNNLQYEDSLKIEQ 379 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 99/324 (30%), Positives = 157/324 (48%), Gaps = 18/324 (5%) Query: 298 PCPENILLSEEA--EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P P I++ E + LE K G KV I VP++G+KR ++ QA NA +S + Sbjct: 426 PIPREIIIPFEISQNQCENLENWLSKLRGSKVSIKVPERGDKRNLMNQANDNAKQSLMRL 485 Query: 356 LSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHI-MGCSAVGCMVVVGENGFVKN 410 S+ IS + + + + P RIE YD S+ G V MVV + + Sbjct: 486 KSSRISSLDARSSAMNEVAEALGMSESPLRIECYDISNTVNGEYQVASMVVFEDGIAKPS 545 Query: 411 QYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIK---NEENLNFHPKKQEYSFPSWPDV 466 +YR+F++ +D + DD + + + RRF +++ K + F P++ Sbjct: 546 EYRRFSIKGSDGNGKLDDLSALYETISRRFKHTSSGDVDDDYGENLEKSKYKKFAYTPNL 605 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526 +++DGG+ Q AAQ + + I + +AK + E + ++L Sbjct: 606 IVVDGGREQARAAQKAMIDCGI-KNIVVCGLAKKLE-----EVWLPNNEYPIILKRSSQG 659 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 LY +QR RDE+HRFAIT HR++R++ S LD I GIG K+ LL FG+VK + +S Sbjct: 660 LYLLQRARDESHRFAITYHRQKRRRAMLNSSLDSIPGIGEFYKKRLLSVFGSVKKLKDAS 719 Query: 586 PETLASIEGISKKIACKIYNHFHK 609 + L + GI + A IY HK Sbjct: 720 VDDLQKVSGIGQAKAKSIYESLHK 743 >gi|311114686|ref|YP_003985907.1| excision endonuclease subunit UvrC [Gardnerella vaginalis ATCC 14019] gi|310946180|gb|ADP38884.1| excision endonuclease subunit UvrC [Gardnerella vaginalis ATCC 14019] Length = 749 Score = 254 bits (648), Expect = 4e-65, Method: Composition-based stats. Identities = 91/320 (28%), Positives = 161/320 (50%), Gaps = 8/320 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +P PGVY+ D G+V+YVGKA +L+ R+ +Y N R M+ ++ + Sbjct: 66 KTSDIPNQPGVYKWRDEKGKVIYVGKAKSLRNRLSNYFQPLNQLHPRTQSMVLTARSLEW 125 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TE+EAL LE IK PRFN++ +DDK++PY+ ++ P ++ R+ ++ Sbjct: 126 TVVNTELEALTLEYTWIKEFNPRFNVVFKDDKTYPYLAVSVNDDFPRVWITRNRNSKSTR 185 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISS 177 YFGP+A V + +++SL +TF +R+C SVF RPCLL I +CS PC ++ Sbjct: 186 YFGPYAKVWQLRHSLDSLLKTFPVRTCRQSVFVKAHKTGRPCLLAAIGKCSAPCIAKVDR 245 Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + + V + L+G + + R M +++ D+E+A RD++ + N Sbjct: 246 KTHRHNVEQLVGVLTGSIGDSYINDLTREMKESSDNLDFENAAKIRDKINIFKIVMQQNS 305 Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 +++ D F + AC+ F G RG + ++ + +NA I++ L + Sbjct: 306 VVFDENVEADVFGFSGDSLEACVHAFFVREGLLRGEKNWQVERSEDISNADIIANLLMRV 365 Query: 294 YTDKPCPENILLSEEAEETS 313 Y++ N+ + + Sbjct: 366 YSEYESNNNLQYEDSLKIEQ 385 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 99/324 (30%), Positives = 157/324 (48%), Gaps = 18/324 (5%) Query: 298 PCPENILLSEEA--EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 P P I++ E + LE K G KV I VP++G+KR ++ QA NA +S + Sbjct: 432 PIPREIIIPFEISQNQCENLENWLSKLRGSKVSIKVPERGDKRNLMNQANDNAKQSLMRL 491 Query: 356 LSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHI-MGCSAVGCMVVVGENGFVKN 410 S+ IS + + + + P RIE YD S+ G V MVV + + Sbjct: 492 KSSRISSLDARSSAMNEVAEALGMSESPLRIECYDISNTVNGEYQVASMVVFEDGIAKPS 551 Query: 411 QYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIK---NEENLNFHPKKQEYSFPSWPDV 466 +YR+F++ +D + DD + + + RRF +++ K + F P++ Sbjct: 552 EYRRFSIKGSDGNGKLDDLSALYETISRRFKHTSSGDVDDDYGENLEKSKYKKFAYTPNL 611 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526 +++DGG+ Q AAQ + + I + +AK + E + ++L Sbjct: 612 IVVDGGREQARAAQKAMIDCGI-KNIVVCGLAKKLE-----EVWLPNNEYPIILKRSSQG 665 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 LY +QR RDE+HRFAIT HR++R++ S LD I GIG K+ LL FG+VK + +S Sbjct: 666 LYLLQRARDESHRFAITYHRQKRRRAMLNSSLDSIPGIGEFYKKRLLSVFGSVKKLKDAS 725 Query: 586 PETLASIEGISKKIACKIYNHFHK 609 + L + GI + A IY HK Sbjct: 726 VDDLQKVSGIGQAKAKSIYESLHK 749 >gi|254992859|ref|ZP_05275049.1| excinuclease ABC subunit C [Listeria monocytogenes FSL J2-064] Length = 223 Score = 253 bits (647), Expect = 4e-65, Method: Composition-based stats. Identities = 76/217 (35%), Positives = 120/217 (55%), Gaps = 6/217 (2%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY + + + ++ +I + + VT + Sbjct: 13 LPDQPGCYLMKDRQGTIIYVGKAKILKNRVRSYFSGTHDS-KTQRLVQEIVDFEYIVTSS 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 VEALLLE N+IK+ PRFNI L+DDK++P+I IT+ + P L R +G YFGP+ Sbjct: 72 NVEALLLEINLIKKHDPRFNIRLKDDKTYPFIKITN-ERHPRLIITRQVKKDKGKYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A + L R + LR C+ + CL + + +C PC ++ + KY E Sbjct: 131 PNVYAANEVKRILDRLYPLRKCSTLP----NKVCLYYHLGQCLAPCVFDVEASKYKEMQD 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHR 222 E FL+GG +K + + M +A ++E A R Sbjct: 187 EIVAFLNGGYKTVKNDLMKKMQEAAENMEFEKAGEFR 223 >gi|254994507|ref|ZP_05276697.1| excinuclease ABC subunit C [Listeria monocytogenes FSL J2-064] Length = 355 Score = 253 bits (646), Expect = 6e-65, Method: Composition-based stats. Identities = 101/373 (27%), Positives = 170/373 (45%), Gaps = 33/373 (8%) Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F +K C+Q F G+ +++ + + P Sbjct: 6 DRDVFGYAIDKGWMCVQVFFIRQGKLIERDVSQFPFYNDADEDFLTFIGQFYQKANHIPP 65 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS--- 357 + I L ++ + ++ + KI VP++G K+ +++ A NA + +K Sbjct: 66 KEIYLPDDVDSEAVQAVVP------DTKIIVPQRGNKKDLVKLAYKNAKIALNEKFMLLE 119 Query: 358 -TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 E ++ + +P R+E +DNS+I G V MV + KN YRK+ Sbjct: 120 RNEERTVGAVERLGEAMGIPTPS-RVEAFDNSNIHGTDPVSAMVTFLDGKPSKNDYRKYK 178 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + V+ DD A MR V+ RR+ +++K E PD++++DGGKGQ+ Sbjct: 179 IKT--VEGPDDYATMREVIRRRYWRVLKEE--------------LPMPDLILIDGGKGQI 222 Query: 477 SAAQGVL-KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 +A+ VL +L ++ I + +AK K F E + L Y +QR++D Sbjct: 223 DSAKDVLTNELGLD--IPVAGLAKDDKHRTSQ-LLFGDPLEIVPLERNSQEFYLLQRMQD 279 Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E HRFAIT HR+ R K S LD I G+GP RK+ LL+ FG++K + +S E + G Sbjct: 280 EVHRFAITFHRQLRSKTGFQSILDGIPGVGPGRKKKLLKHFGSMKKLKEASVEEIKEA-G 338 Query: 595 ISKKIACKIYNHF 607 + +A +++ H Sbjct: 339 VPLNVAEEVHKHI 351 >gi|171742955|ref|ZP_02918762.1| hypothetical protein BIFDEN_02077 [Bifidobacterium dentium ATCC 27678] gi|283456023|ref|YP_003360587.1| excinuclease ABC subunit C [Bifidobacterium dentium Bd1] gi|171278569|gb|EDT46230.1| hypothetical protein BIFDEN_02077 [Bifidobacterium dentium ATCC 27678] gi|283102657|gb|ADB09763.1| Excinuclease ABC subunit C [Bifidobacterium dentium Bd1] Length = 772 Score = 253 bits (646), Expect = 6e-65, Method: Composition-based stats. Identities = 89/315 (28%), Positives = 158/315 (50%), Gaps = 8/315 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 +P PGVY+ D GRV+YVGKA NL+ R+ +Y R M+ ++ + Sbjct: 51 KPSDIPARPGVYKWRDGEGRVIYVGKAKNLRNRLANYFQPLYQLHPRTQTMVLTARSLEW 110 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TE+E+L LE IK PRFN++ RDDK++PY+ I+ ++P ++ R Sbjct: 111 TVVGTELESLTLEYTWIKEFDPRFNVVFRDDKTYPYLAISSGERVPRVWITRSRKRRDTR 170 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP+A V + +++ L +TF +R+C+ SV+ RPCLL I +CS PC G I Sbjct: 171 YFGPYAKVWDLRHSLDRLLKTFPVRTCSQSVYHKAEVTNRPCLLASIGKCSAPCVGRIGV 230 Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 +++ + L+G + ++ R M A+ + ++E A RD++ L + N Sbjct: 231 DEHRAMSEQLVGVLTGRIGKSYIAQLTREMKAASAELEFEQAARLRDQIQMLQTVIEQNA 290 Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 +++ D F + ++ A + F G RG + ++ + + ++++ + Q Sbjct: 291 VVFDSDVDADIFGIDSDELEASVHAFFVRAGSIRGERNWSVERVEDIGDEELIADLIMQV 350 Query: 294 YTDKPCPENILLSEE 308 Y++ + + E Sbjct: 351 YSEATGEAGLNIEHE 365 Score = 245 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 97/348 (27%), Positives = 159/348 (45%), Gaps = 37/348 (10%) Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P P +++ E LE G V I V +G+K++++++A NA ++ + Sbjct: 418 APVPREVVVPIEPARREDLERWLSGLRGSAVTIRVASRGDKKQLMDRASDNARQAMQRSK 477 Query: 357 STEISHQMI----LKDFTKKFALPHIPKRIEIYDNSHIMG-CSAVGCMVVVGENGFVKNQ 411 + IS + D K L P RIE YD S+ +G V MVV + K++ Sbjct: 478 MSRISDMGARTTAMNDVAKALGLEQAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 537 Query: 412 YRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQ---------LIKNEE-------------- 447 YR+F + D + DD + L RRF + NE+ Sbjct: 538 YRRFAIRGADGQGALDDLNALYETLTRRFRHGNIAGDTGESMDNEQREARTSRTCENTDP 597 Query: 448 -NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAG 506 N+ F P++V++DGG+ Q+ AA L+ V++ + + +AK + Sbjct: 598 GNVPVRQNTDRRHFAYKPNLVVVDGGRPQVMAAARALEDCGVDD-VAVCGLAKRLE---- 652 Query: 507 MEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGP 565 E + ++L + +Y +QR+RDE+HRFAIT HR+ R+K A S LD+I GIG Sbjct: 653 -EVWVPDDDYPIILKRQSEGMYLLQRVRDESHRFAITYHRRTRRKGALRSVLDDIPGIGE 711 Query: 566 LRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 ++ LL FG+V+ + +S E ++GI + A IY+ H Sbjct: 712 SYQKRLLNHFGSVRAMREASVEDFEQVKGIGRAKAESIYHALHAQDQD 759 >gi|167825147|ref|ZP_02456618.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 9] gi|167911866|ref|ZP_02498957.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 112] Length = 334 Score = 253 bits (646), Expect = 7e-65, Method: Composition-based stats. Identities = 101/338 (29%), Positives = 168/338 (49%), Gaps = 18/338 (5%) Query: 285 ILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344 +L F+ Q Y P +++S L+++ +Q G+KV + QG+KR + A Sbjct: 1 MLEAFIAQHYLGNRVPPVLVVSHAPANRELIDLLV-EQAGHKVAVVRQPQGQKRAWLTMA 59 Query: 345 LINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGCMVV 401 NA + + LS + S Q + + RIE +D SH MG + VV Sbjct: 60 EQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQASCVV 119 Query: 402 VGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NLNFH 452 + ++YR++N+ + DD A MR VL RR+ ++++ ++ + Sbjct: 120 YHHHRMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGIDGN 177 Query: 453 PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV 512 S P+VV++DGG+GQ+ A+ V +L ++ + ++ +AKG R G+E Sbjct: 178 AVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLETLIF 236 Query: 513 KKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRL 570 G L L L + ++RDEAHRFAIT R +R K S L+E+ G+G R++ Sbjct: 237 ADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKRRQR 296 Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 LL FG ++ + +S + LAS+EGIS+ +A +IY H Sbjct: 297 LLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 334 >gi|309800821|ref|ZP_07694953.1| putative excinuclease ABC subunit C [Bifidobacterium dentium JCVIHMP022] gi|308222357|gb|EFO78637.1| putative excinuclease ABC subunit C [Bifidobacterium dentium JCVIHMP022] Length = 399 Score = 251 bits (641), Expect = 3e-64, Method: Composition-based stats. Identities = 88/315 (27%), Positives = 157/315 (49%), Gaps = 8/315 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 +P PGVY+ D GRV+YVGKA NL+ R+ +Y R M+ ++ + Sbjct: 51 KPSDIPARPGVYKWRDGEGRVIYVGKAKNLRNRLANYFQPLYQLHPRTQTMVLTARSLEW 110 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TE+E+L LE IK PRFN++ RDDK++PY+ I+ ++P ++ R Sbjct: 111 TVVGTELESLTLEYTWIKEFDPRFNVVFRDDKTYPYLAISSGERVPRVWITRSRKRRDTR 170 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP+A V + +++ L +TF +R+C+ SV+ RPCLL I +CS PC G I Sbjct: 171 YFGPYAKVWDLRHSLDRLLKTFPVRTCSQSVYHKAEVTNRPCLLASIGKCSAPCVGRIGV 230 Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 +++ + L+G + ++ R M + + ++E A RD++ L + N Sbjct: 231 DEHRAMSEQLVGVLTGRIGKSYIAQLTREMKATSAELEFEQAARLRDQIQMLQTVIEQNA 290 Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 +++ D F + ++ A + F G RG + ++ + + ++++ + Q Sbjct: 291 VVFDSDVDADIFGIDSDELEASVHAFFVRAGSIRGERNWSVERVEDIGDEELIADLIMQV 350 Query: 294 YTDKPCPENILLSEE 308 Y++ + + E Sbjct: 351 YSEATGEAGLNIEHE 365 >gi|306822764|ref|ZP_07456142.1| excision endonuclease subunit UvrC [Bifidobacterium dentium ATCC 27679] gi|304554309|gb|EFM42218.1| excision endonuclease subunit UvrC [Bifidobacterium dentium ATCC 27679] Length = 772 Score = 251 bits (640), Expect = 3e-64, Method: Composition-based stats. Identities = 88/315 (27%), Positives = 157/315 (49%), Gaps = 8/315 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 +P PGVY+ D GRV+YVGKA NL+ R+ +Y R M+ ++ + Sbjct: 51 KPSDIPARPGVYKWRDGEGRVIYVGKAKNLRNRLANYFQPLYQLHPRTQTMVLTARSLEW 110 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TV TE+E+L LE IK PRFN++ RDDK++PY+ I+ ++P ++ R Sbjct: 111 TVVGTELESLTLEYTWIKEFDPRFNVVFRDDKTYPYLAISSGERVPRVWITRSRKRRDTR 170 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177 YFGP+A V + +++ L +TF +R+C+ SV+ RPCLL I +CS PC G I Sbjct: 171 YFGPYAKVWDLRHSLDRLLKTFPVRTCSQSVYHKAEVTNRPCLLASIGKCSAPCVGRIGV 230 Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 +++ + L+G + ++ R M + + ++E A RD++ L + N Sbjct: 231 DEHRAMSEQLVGVLTGRIGKSYIAQLTREMKATSAELEFEQAARLRDQIQMLQTVIEQNA 290 Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 +++ D F + ++ A + F G RG + ++ + + ++++ + Q Sbjct: 291 VVFDSDVDADIFGIDSDELEASVHAFFVRAGSIRGERNWSVERVEDIGDEELIADLIMQV 350 Query: 294 YTDKPCPENILLSEE 308 Y++ + + E Sbjct: 351 YSEATGEAGLNIEHE 365 Score = 245 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 97/348 (27%), Positives = 160/348 (45%), Gaps = 37/348 (10%) Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P P +++ E LE G V I V +G+K++++++A NA ++ + Sbjct: 418 APVPREVVVPIEPARREDLERWLSGLRGSAVTIRVASRGDKKQLMDRASDNARQAMQRSK 477 Query: 357 STEISHQMI----LKDFTKKFALPHIPKRIEIYDNSHIMG-CSAVGCMVVVGENGFVKNQ 411 + IS + D K L P RIE YD S+ +G V MVV + K++ Sbjct: 478 MSRISDMGARTTAMNDVAKALGLEQAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 537 Query: 412 YRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQ---------LIKNEE-------------- 447 YR+F + D + DD + + L RRF + NE+ Sbjct: 538 YRRFAIRGADGQGALDDLSALYETLTRRFRHGNIAGDTGESMDNEQREARISRTCENTDP 597 Query: 448 -NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAG 506 N+ F P++V++DGG+ Q+ AA L+ V++ + + +AK + Sbjct: 598 GNVPIRQNTDRRHFAYKPNLVVVDGGRPQVMAAARALEDCGVDD-VAVCGLAKRLE---- 652 Query: 507 MEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGP 565 E + ++L + +Y +QR+RDE+HRFAIT HR+ R+K A S LD+I GIG Sbjct: 653 -EVWVPDDDYPIILKRQSEGMYLLQRVRDESHRFAITYHRRTRRKGALRSVLDDIPGIGE 711 Query: 566 LRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 ++ LL FG+V+ + +S E ++GI + A IY+ H Sbjct: 712 SYQKRLLNHFGSVRAMREASVEDFEQVKGIGRAKAESIYHALHAQDQD 759 >gi|323223339|gb|EGA07675.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] Length = 297 Score = 251 bits (640), Expect = 4e-64, Method: Composition-based stats. Identities = 103/310 (33%), Positives = 164/310 (52%), Gaps = 23/310 (7%) Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P ILL + +LL S + G ++ + +G++ + ++ A NA + KLS + Sbjct: 1 PGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALITKLSQQ 60 Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + L LP I R+E +D SH MG V VV NG ++ +YR++N+ Sbjct: 61 STITQRLTALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNI-- 117 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A M VL RR+ + I+ + PDV+++DGGKGQL+ A Sbjct: 118 AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQLAQA 162 Query: 480 QGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535 + V +L+V ++R ++ +AKG R AG+E F +GE L P L+ IQ +RD Sbjct: 163 KAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRD 222 Query: 536 EAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 E+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S E +A + G Sbjct: 223 ESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 282 Query: 595 ISKKIACKIY 604 IS+ +A KI+ Sbjct: 283 ISQGLAEKIF 292 >gi|153216996|ref|ZP_01950760.1| UvrABC system protein C [Vibrio cholerae 1587] gi|124113978|gb|EAY32798.1| UvrABC system protein C [Vibrio cholerae 1587] Length = 254 Score = 250 bits (637), Expect = 7e-64, Method: Composition-based stats. Identities = 97/255 (38%), Positives = 146/255 (57%), Gaps = 5/255 (1%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M + V+YVGKA +L+KR+ SY N + + ++S I I TVT TE EAL+LE Sbjct: 1 MYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTVTHTETEALILEH 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 N IK+ P++N+LLRDDKS+PYI ++ HK P L HR + +G YFGP+ AV +T Sbjct: 61 NYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKKRRGEYFGPYPDSGAVRET 119 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193 ++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC IS + Y E VH + FL G Sbjct: 120 LHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQEIVHYLRLFLQG 179 Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHN 250 ++ + + M QA+ + +E A RD++ A+ +Q + +D Sbjct: 180 KDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDSLEDLDVLGFAQE 239 Query: 251 KNLACIQTCFFHFGQ 265 +ACI G+ Sbjct: 240 NGIACIHILMIRQGK 254 >gi|330813705|ref|YP_004357944.1| excinuclease ABC subunit C [Candidatus Pelagibacter sp. IMCC9063] gi|327486800|gb|AEA81205.1| excinuclease ABC subunit C [Candidatus Pelagibacter sp. IMCC9063] Length = 259 Score = 249 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 121/271 (44%), Positives = 164/271 (60%), Gaps = 15/271 (5%) Query: 343 QALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVV 402 A+ NA S +K+ + L +KF L +P IEIYDNSH G +A+G V Sbjct: 1 MAVKNAKESLQRKIFDSDQNNNSLTLLREKFNLGFVPTLIEIYDNSHTQGTNAIGSFVSF 60 Query: 403 GENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPS 462 G+ GF+KN+YRKF++ ++ DD MM V+ERRFS+L+K E N Sbjct: 61 GKEGFLKNRYRKFDIKNKNINPGDDYGMMNEVIERRFSKLVKQSEGDN------------ 108 Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522 PD++++DGGKGQ S + L +L ++ II+IAKG R+ G E F + L Sbjct: 109 VPDLLLIDGGKGQYSVVRSKLDQLGFH-QLPIIAIAKGKNRNDGNETFIYNNK-IIKLEK 166 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMI 581 +P+L+F+QRLRDEAHRFAI THRK+RKK+ SPLDEI GIG RK+ LL FG+ K I Sbjct: 167 NNPLLFFMQRLRDEAHRFAIFTHRKKRKKSFLVSPLDEIPGIGRNRKKTLLNHFGSAKTI 226 Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +S E L ++GIS+ IA KIYN+FH N + Sbjct: 227 EGASLEDLKKVDGISELIAKKIYNYFHLNKN 257 >gi|88861508|ref|ZP_01136125.1| excinuclease ABC subunit C [Pseudoalteromonas tunicata D2] gi|88816492|gb|EAR26330.1| excinuclease ABC subunit C [Pseudoalteromonas tunicata D2] Length = 194 Score = 249 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 87/185 (47%), Positives = 123/185 (66%), Gaps = 1/185 (0%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+MLD V+YVGKA NL+KR+ SY +N + ++ I+ I T+ Sbjct: 8 LKTLSSEPGVYRMLDKDDHVIYVGKAKNLKKRVSSYFRANIPESKTRALVKNIHQIEVTL 67 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EALLLE N+IK+ PR+NILLRDDKS+PYIL+T +H+ P + HR S +G YF Sbjct: 68 TNTETEALLLENNLIKQYMPRYNILLRDDKSYPYILVT-EHRHPRIAFHRGSRKQKGDYF 126 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF S AV +++ +Q+ F +R C D+ +R R+RPCL +Q+KRCS PC ++S E+Y + Sbjct: 127 GPFPSSGAVSESLRLMQKIFPVRQCEDAYYRARSRPCLQYQLKRCSAPCVDKVSDEEYQQ 186 Query: 183 FVHEA 187 V Sbjct: 187 EVQFV 191 >gi|218512762|ref|ZP_03509602.1| excinuclease ABC subunit C [Rhizobium etli 8C-3] Length = 231 Score = 248 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 101/165 (61%), Positives = 126/165 (76%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P PGVY+M + G VLYVGKA +L+KR+ +Y H++RI M+ Q N+ F T Sbjct: 61 KRLPNSPGVYRMFNAEGDVLYVGKARSLKKRVGNYAVGRVHSNRIAQMVRQTANMEFVTT 120 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EALLLEAN+IKRL+PRFN+LLRDDKSFPYILIT H+ PA++KHR + +G YFG Sbjct: 121 RTETEALLLEANLIKRLRPRFNVLLRDDKSFPYILITGDHRAPAIFKHRGARARKGDYFG 180 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCS 168 PFAS AV +TINSLQR F +R+C DSVF RTRPCLL+QIKRCS Sbjct: 181 PFASAGAVGRTINSLQRAFLIRTCTDSVFETRTRPCLLYQIKRCS 225 >gi|299821361|ref|ZP_07053249.1| excision endonuclease subunit UvrC [Listeria grayi DSM 20601] gi|299817026|gb|EFI84262.1| excision endonuclease subunit UvrC [Listeria grayi DSM 20601] Length = 402 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 96/368 (26%), Positives = 166/368 (45%), Gaps = 18/368 (4%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG Y D G +LY+GK+ L+KR++SY + + ++ IN++ + VT + Sbjct: 50 LPEAPGCYIYKDENGEILYIGKSKCLKKRVRSYFNKT-QIGKTARLVRLINDLEYIVTDS 108 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLE ++I KP FNI L+D S+PYI IT+ K P + + + YFGP+ Sbjct: 109 EKEALLLEMSLIHTYKPPFNIQLKDGTSYPYIKITN-EKNPIIEIVMEIKQDKAKYFGPY 167 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + +T+ LQR + L C + RPCL +Q+ C GPC E++ E Y + + Sbjct: 168 PNRYSARQTMELLQRLYPLCRCEGKL----GRPCLYYQMGLCIGPCDHEVTPEMYQKQIT 223 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242 + +FL G +K+++ M + +E A RD + A+ I+ Sbjct: 224 KITQFLEGKASKVKQQLKVEMKRQIEALHFERAAELRDIILAIEETVEKQHIIFGDFSSR 283 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F G G L D + + + + F +Q + P+ Sbjct: 284 DIVGYSERNGYRSFHVFFVRNGAINGRKWGILSPDQQQSMEEAIIAFYQQ--PNNMLPKE 341 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362 +L+ + +++ L + + I VPK+G+K + + A N+ + Sbjct: 342 LLIPADLDQSYL-------KTALGIPIIVPKRGKKLEQVHLANENSSSALHAHAHLLEKF 394 Query: 363 QMILKDFT 370 L++ Sbjct: 395 PNGLREAK 402 >gi|112945797|gb|ABI26404.1| UvrC [Lactobacillus reuteri] Length = 314 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 87/308 (28%), Positives = 145/308 (47%), Gaps = 9/308 (2%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M +I +++YVGKA NL+ R++SY ++HT ++ M+S++ + VT T Sbjct: 13 LPDKPGCYLMKNINDQIIYVGKAKNLKNRVRSYF-KSSHTGKVAKMVSEVADFETIVTST 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E+ LLE +I++ +P FNI L+ +PYI IT+ + P + G YFGP+ Sbjct: 72 NKESFLLEITLIQKHQPYFNIKLKKGTGYPYIKITN-ERDPQIKIVSKIKKDGGYYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A E+T++ +Q+ + LR C RPCL + + +C G C ++ +Y E + Sbjct: 131 PNVYAAEETMHFIQKVYPLRRCNGYQ----GRPCLYYHMGQCLGACFKDVPKSEYEEQIK 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242 + K FLSG +K ++ + M A ++E A RD+L + I N Sbjct: 187 KIKSFLSGNTATVKRQLTKKMQLAAENMEFERAAEIRDQLHYIEVTVEKQKIISNDKTPR 246 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D F+ Y +K IQ F + + + P Sbjct: 247 DLFNFYMDKGWLSIQIFFIRQARLMKREKRLFPIVDTAVEEMTSFILQFYNRRNNILPRE 306 Query: 303 ILLSEEAE 310 ILL++ Sbjct: 307 ILLAKGLP 314 >gi|297171377|gb|ADI22381.1| nuclease subunit of the excinuclease complex [uncultured nuHF2 cluster bacterium HF0500_02A10] Length = 418 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 127/439 (28%), Positives = 203/439 (46%), Gaps = 36/439 (8%) Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--- 239 ++E K L G +++++ + M+ A+ ++E A RD + L + + Sbjct: 1 MINEILKVLGGETEYVRDRVQKQMSDASRDLEFERAAHFRDIITVLDGMAHQQLVEDLRG 60 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 N D + + ++ G G T SE + +L ++Y Sbjct: 61 NDYDLIGIARDGDIGVGVVMKIRRGVLLGRDTIRFSEISECNDGSLLDMLTSRYYLGGSK 120 Query: 297 ---KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353 P+ IL+ + E +L+ F + GYKV I +PK+G KR++ E A NA + Sbjct: 121 QPHSDFPKEILVPVDFENKDILKEVLFYKDGYKVDIRIPKRGIKRRLCELATDNARHALE 180 Query: 354 QKLSTEISHQMI----LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 +L+T L D + K P+ I +D SHI G VG VV K Sbjct: 181 DRLTTTRQFHDRADEVLYDLSDKLXXXXXPRFIACFDVSHIQGSETVGSAVVFENAEPKK 240 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469 ++YR+ + + DD M V+ R FS ++N PD+V++ Sbjct: 241 SEYRRMRIRGDW--GNDDYRSMAEVVSRYFSYRLENG--------------LPLPDLVLI 284 Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 DGGKGQL +A L +L V + + +IS+AK + F + E L RD L+ Sbjct: 285 DGGKGQLRSAHDSLNELGVTD-MPMISLAKREEL-----VFRLGTREPLRFKRRDNALHV 338 Query: 530 IQRLRDEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 +QR+RDEAHRFA+T +RK RR + S L EI GIGP +++LLL FG+V+ I ++ E Sbjct: 339 LQRIRDEAHRFAVTYNRKLRRNRTVSSDLSEIPGIGPEKQKLLLLRFGSVRAIKSANVEE 398 Query: 589 LASIEGISKKIACKIYNHF 607 +A I G+ +A +I + Sbjct: 399 IAEISGLGLVLADRIITYL 417 >gi|330752515|emb|CBL87463.1| excinuclease ABC, C subunit [uncultured Sphingobacteria bacterium] Length = 348 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 87/313 (27%), Positives = 152/313 (48%), Gaps = 9/313 (2%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PGVY+ D ++LYVGKA L+KR++SY + R+ ++ +I +I FT + Sbjct: 16 IPNKPGVYEFYDANQKILYVGKAKKLKKRVQSYFQKEQTSARLKLLVKKITSIEFTTVES 75 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 + EA LLE N+IK +P++NI L+DDKS+PYI+I + IP LY R YFGP+ Sbjct: 76 DQEAFLLENNLIKEHQPKYNIQLKDDKSYPYIVIRN-EPIPRLYFTRRKVQDGSEYFGPY 134 Query: 126 ASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 V V +N + LR+C D + + + + CL + I C PCTGE S+ +Y Sbjct: 135 TGVKHVRAIVNLAKELHPLRTCKLDLSPDKISQGKYKVCLEYHIGNCLAPCTGEQSASEY 194 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI-- 238 E + +K L G N+ + + NQAT + ++E A ++ ++ + + + Sbjct: 195 NEGIDTIRKILEGKTSNIIDALIERRNQATQELNFEQAHYYQKKIEKIQEFRMPSLVENL 254 Query: 239 -YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 + D + + H ++ + I + + + ++L +R+F + Sbjct: 255 GIEQADVYQILHKEHGSAIHHIKIREYSIIFSTINQVIPKLHEDDEELLLQAIRKFTMAQ 314 Query: 298 PCPENILLSEEAE 310 P + + Sbjct: 315 PLEAIPPIIAPID 327 >gi|283770207|ref|ZP_06343099.1| UvrABC system protein C [Staphylococcus aureus subsp. aureus H19] gi|283460354|gb|EFC07444.1| UvrABC system protein C [Staphylococcus aureus subsp. aureus H19] Length = 400 Score = 247 bits (631), Expect = 3e-63, Method: Composition-based stats. Identities = 109/428 (25%), Positives = 184/428 (42%), Gaps = 37/428 (8%) Query: 191 LSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR---MDCFSL 247 ++G + + + + M A+ D+E A +RD + + ++ N + + D F Sbjct: 1 MNGEDKTILKSLEERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIRDVFGY 60 Query: 248 YHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSE 307 +K CIQ F G T + P+ + + Sbjct: 61 SVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEFYTFIGQFYSLNQHILPKEVHVPR 120 Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----STEISHQ 363 ++ + + K I P +G K+++++ A NA S K E Sbjct: 121 NLDKEMIQSVVDTK-------IVHPARGPKKEMVDLAAHNAKVSLNNKFELISRDESRTI 173 Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 +++ + + P RIE +DNS+I G V MV + K YRK+ + VK Sbjct: 174 KAIEELGTQMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFIDGKPDKKNYRKYKIKT--VK 230 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV- 482 DD MR V+ RR+S+++ PD++I+DGGKG ++ V Sbjct: 231 GPDDYKSMREVVRRRYSRVLNEG--------------LPLPDLIIVDGGKGHMNGVIDVL 276 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 +L ++ I + + K K E + E + L Y + R++DE HRFAI Sbjct: 277 QNELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEVHRFAI 333 Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR+ R+K S LD+I+GIG RK LLL+SFG++K + ++ E +I GI + +A Sbjct: 334 TFHRQTRQKTGLKSILDDIDGIGSKRKTLLLRSFGSIKKMKEATLEDFKNI-GIPENVAK 392 Query: 602 KIYNHFHK 609 ++ HK Sbjct: 393 NLHEQLHK 400 >gi|237800462|ref|ZP_04588923.1| excinuclease ABC subunit C [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023321|gb|EGI03378.1| excinuclease ABC subunit C [Pseudomonas syringae pv. oryzae str. 1_6] Length = 218 Score = 247 bits (630), Expect = 5e-63, Method: Composition-based stats. Identities = 96/235 (40%), Positives = 133/235 (56%), Gaps = 19/235 (8%) Query: 378 IPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLER 437 P R+E YD SH G + V VV G G +K+ YR+FN+ V DD A M L R Sbjct: 1 PPMRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VTAGDDYAAMHQALTR 58 Query: 438 RFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISI 497 R+S++ E L PDV+++DGGKGQ+S A+ VL +L V + I ++ + Sbjct: 59 RYSRIKAGEGKL--------------PDVLLVDGGKGQMSMARDVLNELQVPDLI-LLGV 103 Query: 498 AKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-S 555 AKG R AG E ++ L P L+ IQ++RDEAHRFAIT HR RR K S Sbjct: 104 AKGTTRKAGFETLYLNDAAHEFTLPGDSPALHLIQQIRDEAHRFAITGHRARRGKTRRTS 163 Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 L+ + G+GP R+R LL+ FG ++ +SR+S + +A GISKK+A IY + H Sbjct: 164 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAESIYANLHSE 218 >gi|269967057|ref|ZP_06181125.1| UvrABC system protein C [Vibrio alginolyticus 40B] gi|269828316|gb|EEZ82582.1| UvrABC system protein C [Vibrio alginolyticus 40B] Length = 211 Score = 246 bits (629), Expect = 6e-63, Method: Composition-based stats. Identities = 79/171 (46%), Positives = 112/171 (65%), Gaps = 1/171 (0%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M + V+YVGKA +L+KR+ SY + + ++S I I TV Sbjct: 11 LKTVTHQPGVYRMYNAEAVVIYVGKAKDLKKRLSSYFRKKVDSEKTRALVSNIAKIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EAL+LE N IK+ P++N+LLRDDKS+PYI I+ HK P L HR + +G YF Sbjct: 71 THTETEALILEHNYIKQYFPKYNVLLRDDKSYPYIFIS-GHKHPRLSIHRGAKKRKGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 GP+ AV +T++ LQ+ F +R C D+V+ +RTRPCL++QI RC+GPC Sbjct: 130 GPYPDSGAVRETLHLLQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVN 180 >gi|153217668|ref|ZP_01951349.1| excinuclease ABC, subunit C [Vibrio cholerae 1587] gi|124113385|gb|EAY32205.1| excinuclease ABC, subunit C [Vibrio cholerae 1587] Length = 298 Score = 246 bits (629), Expect = 6e-63, Method: Composition-based stats. Identities = 99/316 (31%), Positives = 156/316 (49%), Gaps = 22/316 (6%) Query: 298 PCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P I+L+ EET L+ + + G KV V G + + ++ A NA + T K+ Sbjct: 1 SIPARIILNRGLTEETEALQTAISELAGRKVTFHVNPTGTRGRYLKLANTNALTAITTKI 60 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + +++ K ++ + I R+E +D SH MG S + VV + G +K +YR++N Sbjct: 61 NHKMTINQRFKALQEELGMDAIT-RMECFDISHTMGESTMASCVVFNQEGPLKQEYRRYN 119 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + DD A M VLERR+S+ + PD++ +DGGKGQL Sbjct: 120 I--TGITGGDDYAAMAQVLERRYSKQLD---------------SSKIPDIIFIDGGKGQL 162 Query: 477 SAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 + A ++ + II IAKG R G+E G+ L P L+ IQ +R Sbjct: 163 NRAYEIISSCWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQHIR 222 Query: 535 DEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 DE+H AI HR +R K S L+ I G+GP R++ LL+ G ++ + R+S E +A + Sbjct: 223 DESHNHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVP 282 Query: 594 GISKKIACKIYNHFHK 609 GIS +A IY + Sbjct: 283 GISHALAENIYQALKQ 298 >gi|121591833|ref|ZP_01679013.1| UvrABC system protein C [Vibrio cholerae 2740-80] gi|121546301|gb|EAX56586.1| UvrABC system protein C [Vibrio cholerae 2740-80] Length = 213 Score = 246 bits (629), Expect = 7e-63, Method: Composition-based stats. Identities = 88/204 (43%), Positives = 129/204 (63%), Gaps = 2/204 (0%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M + V+YVGKA +L+KR+ SY N + + ++S I I TV Sbjct: 11 LKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EAL+LE N IK+ P++N+LLRDDKS+PYI ++ HK P L HR + +G YF Sbjct: 71 THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKKRRGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181 GP+ AV +T++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC IS + Y Sbjct: 130 GPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQ 189 Query: 182 EFVHEAKKFLSGGNHNLKEKIARN 205 E VH + FL G ++ + + R Sbjct: 190 EIVHYLRLFLQGKDNQVLSILVRK 213 >gi|16802887|ref|NP_464372.1| hypothetical protein lmo0846 [Listeria monocytogenes EGD-e] gi|47094852|ref|ZP_00232466.1| excinuclease ABC subunit C domain protein [Listeria monocytogenes str. 1/2a F6854] gi|224503185|ref|ZP_03671492.1| hypothetical protein LmonFR_11803 [Listeria monocytogenes FSL R2-561] gi|254832189|ref|ZP_05236844.1| hypothetical protein Lmon1_12614 [Listeria monocytogenes 10403S] gi|254898982|ref|ZP_05258906.1| hypothetical protein LmonJ_04175 [Listeria monocytogenes J0161] gi|254911530|ref|ZP_05261542.1| excinuclease ABC subunit C domain-containing protein [Listeria monocytogenes J2818] gi|254935856|ref|ZP_05267553.1| excinuclease ABC subunit C domain-containing protein [Listeria monocytogenes F6900] gi|284801175|ref|YP_003413040.1| hypothetical protein LM5578_0925 [Listeria monocytogenes 08-5578] gi|284994317|ref|YP_003416085.1| hypothetical protein LM5923_0879 [Listeria monocytogenes 08-5923] gi|16410234|emb|CAC98924.1| lmo0846 [Listeria monocytogenes EGD-e] gi|47016734|gb|EAL07653.1| excinuclease ABC subunit C domain protein [Listeria monocytogenes str. 1/2a F6854] gi|258608444|gb|EEW21052.1| excinuclease ABC subunit C domain-containing protein [Listeria monocytogenes F6900] gi|284056737|gb|ADB67678.1| hypothetical protein LM5578_0925 [Listeria monocytogenes 08-5578] gi|284059784|gb|ADB70723.1| hypothetical protein LM5923_0879 [Listeria monocytogenes 08-5923] gi|293589476|gb|EFF97810.1| excinuclease ABC subunit C domain-containing protein [Listeria monocytogenes J2818] Length = 366 Score = 245 bits (626), Expect = 2e-62, Method: Composition-based stats. Identities = 103/360 (28%), Positives = 174/360 (48%), Gaps = 20/360 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG Y D +LY+GK+ L+ R+KSY HS + ++ QI ++ +T + Sbjct: 12 LPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLE +I++ +P FNI L++ S+PYI IT+ K P + + YFGP+ Sbjct: 71 EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEVKRDGAHYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + +T++ +++ F L C RPCL + + C GPC EI Y + +H Sbjct: 130 PGRFSARQTVDLIEKLFPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIEPAVYKKQIH 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 + +FL G N+K+K+ +M AT ++E A RD++ A++ I+ Sbjct: 186 KISRFLEGDVKNVKDKLLGDMLTATENLEFERAAELRDKIHAINETIEKQHIIFPGLKNR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300 D Y N + F G G+ + E T + L+ FL QFY D P Sbjct: 246 DIIGCYEQDNYLSVFVFFVRNGAINGSKWHVFQV--EKTLQEELATFLNQFYEDPNNIQP 303 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +L++E+ +++ L E + P++G K+K ++ A+ NA ++ + Sbjct: 304 KELLIAEKIDKSLLNE-------PLRKACLFPQKGSKKKQVDLAIENAKSAYIAYAKMKE 356 >gi|315302789|ref|ZP_07873556.1| excinuclease ABC subunit C [Listeria ivanovii FSL F6-596] gi|313628846|gb|EFR97212.1| excinuclease ABC subunit C [Listeria ivanovii FSL F6-596] Length = 210 Score = 245 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 73/204 (35%), Positives = 114/204 (55%), Gaps = 6/204 (2%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY + + + ++ +I + + VT + Sbjct: 13 LPDQPGCYLMKDRQGTIIYVGKAKILKNRVRSYFSGTHDS-KTQRLVQEIVDFEYIVTSS 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 VEALLLE N+IK+ PRFNI L+DDK++P+I IT+ + P L R +G YFGP+ Sbjct: 72 NVEALLLEINLIKKHDPRFNIRLKDDKTYPFIKITN-ERHPRLIITRQVKKDKGKYFGPY 130 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 +V A + L R + LR C+ + CL + + +C PC ++ + KY E Sbjct: 131 PNVYAANEVKRILDRLYPLRKCSTLPNQ----VCLYYHLGQCLAPCVFDVEASKYKEMQD 186 Query: 186 EAKKFLSGGNHNLKEKIARNMNQA 209 E FL+GG +K + + M A Sbjct: 187 EIVAFLNGGYKTVKNDLMKKMQLA 210 >gi|254827789|ref|ZP_05232476.1| excinuclease ABC subunit C domain-containing protein [Listeria monocytogenes FSL N3-165] gi|258600170|gb|EEW13495.1| excinuclease ABC subunit C domain-containing protein [Listeria monocytogenes FSL N3-165] Length = 366 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 103/360 (28%), Positives = 175/360 (48%), Gaps = 20/360 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG Y D +LY+GK+ L+ R+KSY HS + ++ QI ++ +T + Sbjct: 12 LPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLE +I++ +P FNI L++ S+PYI IT+ K P + + YFGP+ Sbjct: 71 EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEVKRDGAHYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + +T++ +++ F L C + RPCL + + C GPC EI Y + +H Sbjct: 130 PGRFSARQTVDLIEKLFPLCRCDGKL----GRPCLYYHLGLCLGPCQAEIEPAVYKKQIH 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 + +FL G N+K+K+ +M AT ++E A RD++ A++ I+ Sbjct: 186 KISRFLEGDVKNVKDKLLGDMLTATENLEFERAAELRDKIHAINETIEKQHIIFPGLKNR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300 D Y N + F G G+ + E T + L+ FL QFY D P Sbjct: 246 DIIGCYEQDNYLSVFVFFVRNGAINGSKWHVFQV--EKTLQEELATFLNQFYEDPNNIQP 303 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +L++E+ +++ L E + P++G K+K ++ A+ NA ++ + Sbjct: 304 KELLIAEKIDKSLLNE-------PLRKACLFPQKGSKKKQVDLAIENAKSAYIAYAKMKE 356 >gi|313609880|gb|EFR85295.1| UvrABC system protein C [Listeria monocytogenes FSL F2-208] Length = 366 Score = 244 bits (622), Expect = 4e-62, Method: Composition-based stats. Identities = 105/360 (29%), Positives = 172/360 (47%), Gaps = 20/360 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG Y D +LY+GK+ L+ R+KSY HS + ++ QI ++ +T + Sbjct: 12 LPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLE +I++ +P FNI L++ S+PYI IT+ K P + + YFGP+ Sbjct: 71 EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEVKRDGAHYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + +T++ +++ F L C RPCL + + C GPC EI Y + +H Sbjct: 130 PGRFSARQTVDLIEKLFPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIDPAVYKKQIH 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 + +FL G N+K K+ +M AT ++E A RD++ A++ I+ Sbjct: 186 KISRFLEGDVKNVKAKLQEDMLTATENLEFERAAELRDKIHAINETIEKQHIIFPGLKNR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300 D Y N + F G G+ + E + + L+ FL QFY D P Sbjct: 246 DIIGCYEQDNHLSVFVFFVRNGAINGSKWHVFQI--EKSLQEDLAKFLNQFYEDPNNIQP 303 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +L+SE+ ++ L E + P++G K+K IE A+ NA ++ + Sbjct: 304 KELLISEKLDKKLLNE-------PLRKACLFPQKGGKKKQIELAIENAKSAYIAYAKMKE 356 >gi|257892935|ref|ZP_05672588.1| excinuclease ABC subunit C [Enterococcus faecium 1,231,408] gi|257829314|gb|EEV55921.1| excinuclease ABC subunit C [Enterococcus faecium 1,231,408] Length = 336 Score = 243 bits (621), Expect = 5e-62, Method: Composition-based stats. Identities = 101/356 (28%), Positives = 169/356 (47%), Gaps = 32/356 (8%) Query: 260 FFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISF 319 F G+ +E+ + + P+ +L+ + ++ S+ + Sbjct: 8 FVRQGKLIERDVSMFPFYNEAEEDFLTYIGQFYQENEHFIPKEVLIPDTIDKPSVEALLD 67 Query: 320 FKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLSTEISHQMILKDFTKKFAL 375 K + PK+GEK+K++E A NA + + ++ + Sbjct: 68 TK-------VLQPKRGEKKKLVELANKNASVALNERFDLIARKQERTIGAVERLGNAMNI 120 Query: 376 PHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVL 435 P RIE +DNS+IMG + V MVV + + +YRK+ + V DD A MR V+ Sbjct: 121 PTP-IRIESFDNSNIMGTNPVAAMVVFIDGKPARKEYRKYKIKT--VNGPDDYASMREVI 177 Query: 436 ERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITII 495 RR+S++I+ PD++++DGGKGQ+ A+ VL + + I I Sbjct: 178 YRRYSRVIREG--------------LPLPDLILIDGGKGQVDVAKDVL-ENQLGIDIPIA 222 Query: 496 SIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY- 554 +AK K E F + L P + +QR++DE HRFAIT HR+ R K ++ Sbjct: 223 GMAKNDKHKT-NELLFGTDLAVVPLERNSPEFFLLQRVQDEVHRFAITFHRQLRSKNSFA 281 Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 S LDEI G+GP RK++LL+ F ++K I+ ++ E L I G+ K +A +++ H+ Sbjct: 282 SRLDEIEGLGPKRKKMLLKEFKSLKNITAATIEELQEI-GLPKNVAQNVFDKLHQE 336 >gi|46907077|ref|YP_013466.1| excinuclease ABC subunit C [Listeria monocytogenes serotype 4b str. F2365] gi|46880344|gb|AAT03643.1| excinuclease ABC subunit C domain protein [Listeria monocytogenes serotype 4b str. F2365] Length = 366 Score = 243 bits (621), Expect = 5e-62, Method: Composition-based stats. Identities = 102/360 (28%), Positives = 174/360 (48%), Gaps = 20/360 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG Y D +LY+GK+ L+ R+KSY HS + ++ QI ++ +T + Sbjct: 12 LPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLE +I++ +P FNI L++ S+PYI IT+ K P + + YFGP+ Sbjct: 71 EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEVKRDGAHYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + +T++ +++ F L C RPCL + + C GPC EI Y + +H Sbjct: 130 PGRFSARQTVDLIEKLFPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIDPAVYKKQIH 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 + +FL G N+K+K+ +M AT ++E A RD++ A++ I+ Sbjct: 186 KISRFLEGDVKNVKDKLLGDMLTATENLEFERAAELRDKIHAINETIEKQHIIFPGLKNR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300 D Y N + F G G+ + E + + L+ FL QFY D P Sbjct: 246 DIIGCYEQDNHLSVFVFFVRNGAINGSKWHVFQI--EKSLQEDLAKFLNQFYEDPNNIRP 303 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +L++E+ +++ L E + P++G K+K ++ A+ NA ++ + Sbjct: 304 KELLIAEKIDKSLLNEQL-------RKACLFPQKGGKKKQVDLAIENAKSAYIAYAKMKE 356 >gi|254852337|ref|ZP_05241685.1| excinuclease ABC subunit C domain-containing protein [Listeria monocytogenes FSL R2-503] gi|254993069|ref|ZP_05275259.1| excinuclease ABC, chain C (UvrC) [Listeria monocytogenes FSL J2-064] gi|300765790|ref|ZP_07075765.1| excinuclease ABC subunit C domain protein [Listeria monocytogenes FSL N1-017] gi|258605644|gb|EEW18252.1| excinuclease ABC subunit C domain-containing protein [Listeria monocytogenes FSL R2-503] gi|300513484|gb|EFK40556.1| excinuclease ABC subunit C domain protein [Listeria monocytogenes FSL N1-017] Length = 366 Score = 243 bits (621), Expect = 5e-62, Method: Composition-based stats. Identities = 102/360 (28%), Positives = 174/360 (48%), Gaps = 20/360 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG Y D +LY+GK+ L+ R+KSY HS + ++ QI ++ +T + Sbjct: 12 LPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLE +I++ +P FNI L++ S+PYI IT+ K P + + YFGP+ Sbjct: 71 EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEVKRDGAHYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + +T++ +++ F L C RPCL + + C GPC EI Y + +H Sbjct: 130 PGRFSARQTVDLIEKLFPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIDPVVYKKQIH 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 + +FL G N+K+K+ +M AT ++E A RD++ A++ I+ Sbjct: 186 KISRFLEGDVKNVKDKLLGDMLTATENLEFERAAELRDKIHAINETIEKQHIIFPGLKNR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300 D Y N + F G G+ + E + + L+ FL QFY D P Sbjct: 246 DIIGCYEQDNHLSVFVFFVRNGAINGSKWHVFQI--EKSLQEDLAKFLNQFYEDPNNIRP 303 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +L++E+ +++ L E + P++G K+K ++ A+ NA ++ + Sbjct: 304 KELLIAEKIDKSLLNEQL-------RKACLFPQKGGKKKQVDLAIENAKSAYIAYAKMKE 356 >gi|217965061|ref|YP_002350739.1| UvrABC system protein C (Protein UvrC) (Excinuclease ABC subunit C) [Listeria monocytogenes HCC23] gi|217334331|gb|ACK40125.1| UvrABC system protein C (Protein UvrC) (Excinuclease ABC subunit C) [Listeria monocytogenes HCC23] gi|307570379|emb|CAR83558.1| excinuclease ABC subunit C domain protein [Listeria monocytogenes L99] Length = 366 Score = 243 bits (621), Expect = 6e-62, Method: Composition-based stats. Identities = 104/360 (28%), Positives = 172/360 (47%), Gaps = 20/360 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG Y D +LY+GK+ L+ R+KSY HS + ++ QI ++ +T + Sbjct: 12 LPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLE +I++ +P FNI L++ S+PYI IT+ K P + + YFGP+ Sbjct: 71 EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEVKRDGAHYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + +T++ +++ F L C RPCL + + C GPC EI Y + +H Sbjct: 130 PGRFSARQTVDLIEKLFPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIDPAVYKKQIH 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 + +FL G N+K K+ +M AT ++E A RD++ A++ I+ Sbjct: 186 KISRFLEGDVKNVKAKLQEDMLTATENLEFERAAELRDKIHAINETIEKQHIIFPGLKNR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300 D Y N + F G G+ + E + + L+ FL QFY D P Sbjct: 246 DIIGCYEQDNHLSVFVFFVRNGAINGSKWHVFQI--EKSLQEDLAKFLNQFYEDPNNIQP 303 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +L++E+ ++ L E + P++G K+K IE A+ NA ++ + Sbjct: 304 KELLIAEKLDKKLLNE-------PLRKACLFPQKGGKKKQIELAIENAKSAYIAYAKMKE 356 >gi|224500427|ref|ZP_03668776.1| hypothetical protein LmonF1_12474 [Listeria monocytogenes Finland 1988] Length = 366 Score = 243 bits (621), Expect = 6e-62, Method: Composition-based stats. Identities = 103/360 (28%), Positives = 173/360 (48%), Gaps = 20/360 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG Y D +LY+GK+ L+ R+KSY HS + ++ QI + +T + Sbjct: 12 LPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRELELIITTS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLE +I++ +P FNI L++ S+PYI IT+ K P + + YFGP+ Sbjct: 71 EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEVKRDGAHYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + +T++ +++ F L C RPCL + + C GPC EI Y + +H Sbjct: 130 PGRFSARQTVDLIEKLFPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIEPAVYKKQIH 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 + +FL G N+K+K+ +M AT ++E A RD++ A++ I+ Sbjct: 186 KISRFLEGDVKNVKDKLLGDMLTATENLEFERAAELRDKIHAINETIEKQHIIFPGLKNR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300 D Y N + F G G+ + E T + L+ FL QFY D P Sbjct: 246 DIIGCYEQDNYLSVFVFFVRNGAINGSKWHVFQV--EKTLQEELATFLNQFYEDPNNIQP 303 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +L++E+ +++ L E + P++G K+K ++ A+ NA ++ + Sbjct: 304 KELLIAEKIDKSLLNE-------PLRKACLFPQKGSKKKQVDLAIENAKSAYIAYAKMKE 356 >gi|290892962|ref|ZP_06555952.1| excinuclease ABC subunit C domain-containing protein [Listeria monocytogenes FSL J2-071] gi|290557538|gb|EFD91062.1| excinuclease ABC subunit C domain-containing protein [Listeria monocytogenes FSL J2-071] Length = 366 Score = 243 bits (621), Expect = 6e-62, Method: Composition-based stats. Identities = 104/360 (28%), Positives = 172/360 (47%), Gaps = 20/360 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG Y D +LY+GK+ L+ R+KSY HS + ++ QI ++ +T + Sbjct: 12 LPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLE +I++ +P FNI L++ S+PYI IT+ K P + + YFGP+ Sbjct: 71 EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEIVFEVKRDGAHYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + +T++ +++ F L C RPCL + + C GPC EI Y + +H Sbjct: 130 PGRFSARQTVDLIEKLFPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIDPAVYKKQIH 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 + +FL G N+K K+ +M AT ++E A RD++ A++ I+ Sbjct: 186 KISRFLEGDVKNVKAKLQEDMLTATENLEFERAAELRDKIHAINETIEKQHIIFPGLKNR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300 D Y N + F G G+ + E + + L+ FL QFY D P Sbjct: 246 DIIGCYEQDNHLSVFVFFVRNGAINGSKWHVFQI--EKSLQEDLAKFLNQFYEDPNNIQP 303 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +L++E+ ++ L E + P++G K+K IE A+ NA ++ + Sbjct: 304 KELLIAEKLDKKLLNE-------PLRKACLFPQKGGKKKQIELAIENAKSAYIAYAKMKE 356 >gi|153820511|ref|ZP_01973178.1| UvrABC system protein C [Vibrio cholerae NCTC 8457] gi|126508944|gb|EAZ71538.1| UvrABC system protein C [Vibrio cholerae NCTC 8457] Length = 181 Score = 243 bits (620), Expect = 7e-62, Method: Composition-based stats. Identities = 78/170 (45%), Positives = 113/170 (66%), Gaps = 1/170 (0%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M + V+YVGKA +L+KR+ SY N + + ++S I I TV Sbjct: 11 LKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EAL+LE N IK+ P++N+LLRDDKS+PYI ++ HK P L HR + +G YF Sbjct: 71 THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKKRRGEYF 129 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT 172 GP+ AV +T++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC Sbjct: 130 GPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCV 179 >gi|255017864|ref|ZP_05289990.1| hypothetical protein LmonF_09265 [Listeria monocytogenes FSL F2-515] Length = 326 Score = 243 bits (619), Expect = 1e-61, Method: Composition-based stats. Identities = 96/316 (30%), Positives = 157/316 (49%), Gaps = 13/316 (4%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG Y D +LY+GK+ L+ R+KSY HS + ++ QI ++ +T + Sbjct: 12 LPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLE +I++ +P FNI L++ S+PYI IT+ K P + + YFGP+ Sbjct: 71 EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEVKRDGAHYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + +T++ +++ F L C RPCL + + C GPC EI Y + +H Sbjct: 130 PGRFSARQTVDLIEKLFPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIEPAVYKKQIH 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 + +FL G N+K+K+ +M AT ++E A RD++ A++ I+ Sbjct: 186 KISRFLEGDVKNVKDKLLGDMLTATENLEFERAAELRDKIHAINETIEKQHIIFPGLKNR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300 D Y N + F G G+ + E T + L+ FL QFY D P Sbjct: 246 DIIGCYEQDNYLSVFVFFVRNGAINGSKWHVFQV--EKTLQEELATFLNQFYEDPNNIQP 303 Query: 301 ENILLSEEAEETSLLE 316 + +L++E+ +++ L E Sbjct: 304 KELLIAEKIDKSLLNE 319 >gi|254823886|ref|ZP_05228887.1| excinuclease ABC subunit C domain-containing protein [Listeria monocytogenes FSL J1-194] gi|293593111|gb|EFG00872.1| excinuclease ABC subunit C domain-containing protein [Listeria monocytogenes FSL J1-194] Length = 366 Score = 243 bits (619), Expect = 1e-61, Method: Composition-based stats. Identities = 101/360 (28%), Positives = 174/360 (48%), Gaps = 20/360 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG Y + +LY+GK+ L+ R+KSY HS + ++ QI ++ +T + Sbjct: 12 LPESPGCYIYRNENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLE +I++ +P FNI L++ S+PYI IT+ K P + + YFGP+ Sbjct: 71 EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEVKRDGAHYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + +T++ +++ F L C RPCL + + C GPC EI Y + +H Sbjct: 130 PGRFSARQTVDLIEKLFPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIDPAVYKKQIH 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 + +FL G N+K+K+ +M AT ++E A RD++ A++ I+ Sbjct: 186 KISRFLEGDVKNVKDKLLGDMLTATENLEFERAAELRDKIHAINETIEKQHIIFPGLKNR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300 D Y N + F G G+ + E + + L+ FL QFY D P Sbjct: 246 DIIGCYEQDNHLSVFVFFVRNGAINGSKWHVFQI--EKSLQEDLAKFLNQFYEDPNNIRP 303 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +L++E+ +++ L E + P++G K+K ++ A+ NA ++ + Sbjct: 304 KELLIAEKIDKSLLNEQL-------RKACLFPQKGGKKKQVDLAIENAKSAYIAYAKMKE 356 >gi|116872259|ref|YP_849040.1| excinuclease ABC, subunit C [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741137|emb|CAK20257.1| excinuclease ABC, subunit C [Listeria welshimeri serovar 6b str. SLCC5334] Length = 366 Score = 243 bits (619), Expect = 1e-61, Method: Composition-based stats. Identities = 106/360 (29%), Positives = 172/360 (47%), Gaps = 20/360 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG Y D +LY+GK+ L+ R+KSY HS + ++ QI ++ +T + Sbjct: 12 LPESPGCYIYKDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLE +I++ +P FNI L++ S+PYI IT+ K P + ++ YFGP+ Sbjct: 71 EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEAKQDGAHYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + +T++ +Q+ F L C RPCL + + C GPC EI Y +H Sbjct: 130 PGRYSARQTVDLIQKLFPLCRCDG----KPGRPCLYYHLGLCLGPCLREIDPAVYKAQIH 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 + +FL G +K+KI M +AT K ++E A RD+L A++ I+ Sbjct: 186 KISRFLEGDVKPVKKKIQAIMQEATDKLEFERAAEQRDKLHAINETIEKQHIIFPGLKNR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300 D Y N + F G G + E + + L++F+ QFY D P Sbjct: 246 DIIGCYEQDNYLSVFVFFVRNGAINGRKWHVFQV--EKSLQEDLAHFINQFYEDPNNIQP 303 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +L++E+ ++ SL E + P++G K+K I A NA ++ + Sbjct: 304 KELLIAEKLDKLSLAE-------PLRKACVFPQKGGKKKQINLANENAKSTYIAYAKMKE 356 >gi|46204773|ref|ZP_00049515.2| COG0322: Nuclease subunit of the excinuclease complex [Magnetospirillum magnetotacticum MS-1] Length = 234 Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats. Identities = 104/235 (44%), Positives = 133/235 (56%), Gaps = 23/235 (9%) Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPK---- 454 M+V G GF+K YR FN+ ++ DD MMR VL RRF +L K + Sbjct: 1 MIVAGPTGFMKTHYRTFNIKSEELTPGDDFGMMREVLTRRFKRLAKEAPRTPKEAEVGEP 60 Query: 455 -----------------KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISI 497 +FP+WPD+V++DGG GQL AA+ L ++ V + + ++ I Sbjct: 61 QAAAEGQAVPPATEALPDDPDAFPAWPDLVLIDGGAGQLEAARASLAEIGVID-VPLVGI 119 Query: 498 AKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSP 556 AKG R AG E FFV L RDP+LYF+QRLRDEAHRFAI THR RRK+ +P Sbjct: 120 AKGRDRDAGRETFFVPGRTPFKLPPRDPVLYFVQRLRDEAHRFAIGTHRARRKREMTRNP 179 Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 LDEI GIGP RKR LL FGTVK I R++ E LA G++ A +Y+ FH N Sbjct: 180 LDEIAGIGPTRKRALLHHFGTVKAIQRAALEDLAKAPGVNAATARAVYDFFHANA 234 >gi|332311252|gb|EGJ24347.1| Excinuclease ABC, subunit C [Listeria monocytogenes str. Scott A] Length = 366 Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats. Identities = 102/360 (28%), Positives = 174/360 (48%), Gaps = 20/360 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG Y D +LY+GK+ L+ R+KSY HS + ++ QI ++ +T + Sbjct: 12 LPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLE +I++ +P FNI L++ S+PYI IT+ K P + + YFGP+ Sbjct: 71 EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEVKRDGAHYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + +T++ +++ F L C RPCL + + C GPC EI Y + +H Sbjct: 130 PGRFSARQTVDLIEKLFPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIDPAVYKKQIH 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 + +FL G N+K+K+ +M AT ++E A RD++ A++ I+ Sbjct: 186 KISRFLEGDVKNVKDKLLGDMLTATENLEFERAAELRDKIHAINETIEKQHIIFPGLKNR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300 D Y N + F G G+ + E + + L+ FL QFY D P Sbjct: 246 DIIGCYEQDNHLSVFVFFVRNGAINGSKWHVFQI--EKSLQEDLAKFLNQFYKDPNNIRP 303 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +L++E+ +++ L E + P++G K+K ++ A+ NA ++ + Sbjct: 304 KELLIAEKIDKSLLNEQI-------RKACLFPQKGGKKKQVDLAIENAKSAYIAYAKMKE 356 >gi|47092053|ref|ZP_00229846.1| excinuclease ABC subunit C domain protein [Listeria monocytogenes str. 4b H7858] gi|47019493|gb|EAL10233.1| excinuclease ABC subunit C domain protein [Listeria monocytogenes str. 4b H7858] Length = 366 Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats. Identities = 102/360 (28%), Positives = 174/360 (48%), Gaps = 20/360 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG Y D +LY+GK+ L+ R+KSY HS + ++ QI ++ +T + Sbjct: 12 LPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLE +I++ +P FNI L++ S+PYI IT+ K P + + YFGP+ Sbjct: 71 EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEVKRDGAHYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + +T++ +++ F L C RPCL + + C GPC EI Y + +H Sbjct: 130 PGRFSARQTVDLIEKLFPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIDPVVYKKQIH 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 + +FL G N+K+K+ +M AT ++E A RD++ A++ I+ Sbjct: 186 KISRFLEGDVKNVKDKLLGDMLTATENLEFERAAELRDKIHAINETIEKQHIIFPGLKNR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300 D Y N + F G G+ + E + + L+ FL QFY D P Sbjct: 246 DIIGCYEQDNHLSVFVFFVRNGAINGSKWHVFQI--EKSLQEDLAKFLNQFYKDPNNIRP 303 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +L++E+ +++ L E + P++G K+K ++ A+ NA ++ + Sbjct: 304 KELLIAEKIDKSLLNEQL-------RKACLFPQKGGKKKQVDLAIENAKSAYIAYAKMKE 356 >gi|226223464|ref|YP_002757571.1| excinuclease ABC, chain C (UvrC) [Listeria monocytogenes Clip81459] gi|254931227|ref|ZP_05264586.1| excinuclease ABC subunit C domain-containing protein [Listeria monocytogenes HPB2262] gi|225875926|emb|CAS04630.1| Putative excinuclease ABC, chain C (UvrC) [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293582775|gb|EFF94807.1| excinuclease ABC subunit C domain-containing protein [Listeria monocytogenes HPB2262] Length = 366 Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats. Identities = 102/360 (28%), Positives = 174/360 (48%), Gaps = 20/360 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG Y D +LY+GK+ L+ R+KSY HS + ++ QI ++ +T + Sbjct: 12 LPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLE +I++ +P FNI L++ S+PYI IT+ K P + + YFGP+ Sbjct: 71 EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEVKRDGAHYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + +T++ +++ F L C RPCL + + C GPC EI Y + +H Sbjct: 130 PGRFSARQTVDLIEKLFPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIDPAVYKKQIH 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 + +FL G N+K+K+ +M AT ++E A RD++ A++ I+ Sbjct: 186 KISRFLEGDVKNVKDKLLGDMLTATENLEFERAAELRDKIHAINETIEKQHIIFPGLKNR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300 D Y N + F G G+ + E + + L+ FL QFY D P Sbjct: 246 DIIGCYEQDNHLSVFVFFVRNGAINGSKWHVFQI--EKSLQEDLAKFLNQFYKDPNNIRP 303 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +L++E+ +++ L E + P++G K+K ++ A+ NA ++ + Sbjct: 304 KELLIAEKIDKSLLNEQL-------RKACLFPQKGGKKKQVDLAIENAKSAYIAYAKMKE 356 >gi|226324327|ref|ZP_03799845.1| hypothetical protein COPCOM_02108 [Coprococcus comes ATCC 27758] gi|225206775|gb|EEG89129.1| hypothetical protein COPCOM_02108 [Coprococcus comes ATCC 27758] Length = 223 Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats. Identities = 76/207 (36%), Positives = 117/207 (56%), Gaps = 3/207 (1%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRF 60 +++P PGVY M ++YVGKA +L+ R++ Y + + +I M++ I + Sbjct: 11 ELKKLPGKPGVYLMHGEKDEIIYVGKAISLKNRVRQYFQPSRNRGAKIDQMVTHITRFEY 70 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+EAL+LE N+IK +P++N +L DDKS+P+I +T P + R + Sbjct: 71 IVTDSELEALVLECNLIKEHRPKYNTMLMDDKSYPFIKVTTGEAYPRIMMARQMKKDKSK 130 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 YFGP+ SV AV+ TI +++ + LRSC + R + R CL IK+C PC G IS E Sbjct: 131 YFGPYTSVTAVKDTIELIRKLYRLRSCNRILPRDIGKERCCLYHHIKQCDAPCQGYISQE 190 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARN 205 KY E V E KFL G + + + + Sbjct: 191 KYRESVDEVLKFLGGNYDKILKDLEKK 217 >gi|332978175|gb|EGK14909.1| excinuclease ABC subunit C [Desmospora sp. 8437] Length = 240 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 126/232 (54%), Gaps = 6/232 (2%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG Y M ++ ++Y+GKA +L+ R++SY + H + ++S+I + + VT + Sbjct: 12 LPEKPGCYLMKNLRDEIIYIGKAKSLKNRVRSYFTGS-HDGKTQLLVSEIEDFEYIVTES 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 EAL+LEA +IKR +P +N+L++DDKS+PYI +T + P L R YFGP+ Sbjct: 71 ATEALILEAVLIKRHRPHYNVLMKDDKSYPYIRLT-RETHPRLEVTRKVKKDGSRYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + A ++T L + + LR C R CL + + +C PC ++ +Y E V Sbjct: 130 PNAQAAQQTKKLLDKLYPLRKCRTLP----KRVCLYYHLGQCLAPCEFDVDPSQYEEMVR 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E +FL+GG ++ + R M+ A + ++E A RD + + + + Sbjct: 186 EISRFLNGGFQEVQRDLERKMHLAAEELNFERARELRDLIQHIEAVMVKQNI 237 >gi|313624520|gb|EFR94517.1| UvrABC system protein C [Listeria innocua FSL J1-023] Length = 366 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 98/360 (27%), Positives = 172/360 (47%), Gaps = 20/360 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG Y D +LY+GK+ L+ R+KSY HS + ++ QI ++ +T + Sbjct: 12 LPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLE +I++ +P FNI L++ S+PYI IT+ K P + + YFGP+ Sbjct: 71 EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEVKQDGAHYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + +T+ +++ + L C RPCL + + C GPC EI Y + + Sbjct: 130 PGRFSARQTVELIEKLYPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIEPAVYKKQIQ 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 + +FL G +K ++ ++M AT K ++E A RD++ A++ I+ Sbjct: 186 KISRFLEGDVKGVKGRLTKDMEAATEKLEFERAAELRDKIHAINETIEKQHIIFPGLKNR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300 D Y N + F G G+ E++ + L+ F+ QFY D P Sbjct: 246 DIIGCYEQDNHLSVFVFFVRNGAINGSKWHVF--PIENSLQEDLADFINQFYEDPNNIQP 303 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +L++E+ ++ +L E + + P++G K+K + A+ NA ++ + Sbjct: 304 KELLIAEKIDKIALKE-------PLRKASSFPQKGGKKKQLNLAIENAKSTYAAYAKMKE 356 >gi|313634163|gb|EFS00820.1| UvrABC system protein C [Listeria seeligeri FSL N1-067] gi|313638786|gb|EFS03870.1| UvrABC system protein C [Listeria seeligeri FSL S4-171] Length = 366 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 99/360 (27%), Positives = 166/360 (46%), Gaps = 20/360 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y D +LY+GK+ L+ R+KSY + ++ QI ++ +T + Sbjct: 12 LPDAPGCYIYKDENNEILYIGKSKCLKNRVKSYFTGK-QIGKTARLVRQIRDLELIITSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLE +I++ +P FNI L++ +S+PYI IT+ K P + ++ YFGP+ Sbjct: 71 EKEALLLEMILIQKYQPPFNIQLKEGQSYPYIKITN-EKNPHIEVVFEAKQDGAHYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + +T+ +++ F L C RPCL + + C GPC EI Y + Sbjct: 130 PGRYSARQTVELIEKLFPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIEPAVYQAQIQ 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 + +FL G ++K K+ +M AT K +E A RD + A++ I+ Sbjct: 186 KITRFLEGNVKDVKTKLTLDMQAATEKLQFERAAELRDTIQAINETIEKQHIIFPGLKNR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300 D Y N + F G GT + + + L+ F+ QFY D P Sbjct: 246 DIIGCYEQDNYLSVFVFFVRNGAINGTKWHVFEIQK--SLQEDLADFINQFYQDPNNIQP 303 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +L+SE+ + SL + I+ P++G K+ I A+ NA ++ + Sbjct: 304 KELLISEKLAKMSL-------SVPLQKAISFPQKGGKKHQINLAVENAKSTYIAYAKMKE 356 >gi|329770493|ref|ZP_08261871.1| hypothetical protein HMPREF0433_01635 [Gemella sanguinis M325] gi|328836242|gb|EGF85911.1| hypothetical protein HMPREF0433_01635 [Gemella sanguinis M325] Length = 331 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 101/331 (30%), Positives = 158/331 (47%), Gaps = 13/331 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PG Y D G ++YVGKA NL+ R+KSY H + ++S+I ++ + Sbjct: 8 KLEFLPDSPGCYIYRDNIGEIIYVGKAKNLKNRVKSYFTGT-HNKKTQVLVSKIEDLEYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGS 120 + +E EAL+LE N+IK+ +P FNI L+DDKS+PY++IT + P L R + Sbjct: 67 IVNSEKEALILENNLIKKYRPYFNIRLKDDKSYPYLMITKEEN-PRLLMTRKYKKSNKNI 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGP+ + + + L + + LR C RPC+ +QI C GPC ++ E+Y Sbjct: 126 YFGPYVDIKSANEVKKILDKVYPLRRCNPIE----KRPCMYYQIGECIGPCARKVPQEEY 181 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DS 237 E +++ K FLSG + E + + M + ++E+A + ++ DS Sbjct: 182 RERINKIKSFLSGDTSEILEDLNKKMKEHIQNLEFEAAQQIHSFIKSIEISIQKQVITDS 241 Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 D +NK CIQ G + + T QIL +L Q+YT Sbjct: 242 KNIDRDYIGFSYNKEYICIQIFLSRMGNIIERKVEYF--NLYDTPEQILYSYLIQYYTLN 299 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVK 328 P+ I + + L EI FFK K Sbjct: 300 KLPKEIYVDG-LDIDLLNEIFFFKSNFSKAW 329 >gi|16799913|ref|NP_470181.1| hypothetical protein lin0839 [Listeria innocua Clip11262] gi|16413290|emb|CAC96071.1| lin0839 [Listeria innocua Clip11262] Length = 366 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 97/358 (27%), Positives = 165/358 (46%), Gaps = 16/358 (4%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG Y D +LY+GK+ L+ R+KSY HS + ++ QI ++ +T + Sbjct: 12 LPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLE +I++ +P FNI L++ S+PYI IT+ K P + + YFGP+ Sbjct: 71 EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEVKQDGAHYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + +T+ +++ + L C RPCL + + C GPC EI Y + + Sbjct: 130 PGRFSARQTVELIEKLYPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIEPAVYKKQIQ 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 + +FL G +K K+ ++M AT K ++E A RD++ A++ I+ Sbjct: 186 KISRFLEGDVKGVKGKLTKDMEAATEKLEFERAAELRDKIHAINETIEKQHIIFPGLKNR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D Y N + F G G+ E++ + L+ F+ QFY D N Sbjct: 246 DIIGCYEQDNHLSVFVFFVRNGAINGSKWHVF--PIENSLQEDLANFINQFYED----PN 299 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +E ++ K+ K K G+K+++ A+ NA ++ + Sbjct: 300 NIQPKELLIAEKIDKITLKEPLRKASSFPQKGGKKKQL-NLAIENAKSTYAAYAKMKE 356 >gi|289434114|ref|YP_003463986.1| excinuclease ABC subunit C domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170358|emb|CBH26898.1| excinuclease ABC subunit C domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 366 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 100/360 (27%), Positives = 167/360 (46%), Gaps = 20/360 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y D +LY+GK+ L+ R+KSY + ++ QI ++ +T + Sbjct: 12 LPDAPGCYIYKDENNEILYIGKSKCLKNRVKSYFTGK-QIGKTARLVRQIRDLELIITSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLE +I++ +P FNI L++ +S+PYI IT+ K P + ++ YFGP+ Sbjct: 71 EKEALLLEMILIQKYQPPFNIQLKEGQSYPYIKITN-EKNPHIEVVFEAKQDGAHYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + +T+ +++ F L C RPCL + + C GPC EI Y +H Sbjct: 130 PGRYSARQTVELIEKLFPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIEPAVYQAQIH 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 + +FL G ++K K+ +M AT K +E A RD + A++ I+ Sbjct: 186 KITRFLEGNVKDVKTKLTLDMQAATEKLQFERAAELRDTIHAINETIEKQHIIFPGLKNR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300 D Y N + F G GT + + + L+ F+ QFY D P Sbjct: 246 DIIGCYEQDNYLGVFVFFVRNGAINGTKWHVFEIQK--SLQEDLADFINQFYQDPNNIQP 303 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +L+SE+ + SL + I+ P++G K+ I A+ NA ++ + Sbjct: 304 KELLISEKLAKMSL-------SVPLQKAISFPQKGGKKHQINLAVENAKSTYIAYAKMKE 356 >gi|313619848|gb|EFR91430.1| UvrABC system protein C [Listeria innocua FSL S4-378] Length = 366 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 97/358 (27%), Positives = 166/358 (46%), Gaps = 16/358 (4%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG Y D +LY+GK+ L+ R+KSY HS + ++ QI ++ +T + Sbjct: 12 LPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLE +I++ +P FNI L++ S+PYI IT+ K P + + YFGP+ Sbjct: 71 EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEVKQDGAHYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + +T+ +++ + L C RPCL + + C GPC EI Y + + Sbjct: 130 PGRFSARQTVELIEKLYPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIEPAVYKKQIQ 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 + +FL G +K K+ ++M AT K ++E A RD++ A++ I+ Sbjct: 186 KISRFLEGDVKGVKGKLIKDMEAATEKLEFERAAELRDKIHAINETIEKQHIIFPGLKNR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 D Y N + F G G+ E++ + L++F+ QFY D N Sbjct: 246 DIIGCYEQDNHLSVFVFFVRNGAINGSKWHVF--PIENSLQEDLAHFINQFYED----PN 299 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +E ++ K+ K K G+K+++ A+ NA ++ + Sbjct: 300 NIQPKELLIAEKIDKITLKEPLRKASSFPQKGGKKKQL-NLAIENAKSTYAAYAKMKE 356 >gi|312880085|ref|ZP_07739885.1| excinuclease ABC, C subunit [Aminomonas paucivorans DSM 12260] gi|310783376|gb|EFQ23774.1| excinuclease ABC, C subunit [Aminomonas paucivorans DSM 12260] Length = 488 Score = 240 bits (613), Expect = 4e-61, Method: Composition-based stats. Identities = 78/236 (33%), Positives = 120/236 (50%), Gaps = 3/236 (1%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 Q+P+ PGVY M D GRV+YVGKA +L+KR+ SY + R+ ++ I ++ Sbjct: 9 QVRQLPDRPGVYLMHDREGRVIYVGKAKSLRKRVSSYFRHGGFASPRLRKLVESIEDLST 68 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T +E EAL+LEA +IK+ +P FN+ L+ + +PY+ IT P L R Sbjct: 69 IRTGSEAEALILEARLIKQYQPFFNVELKLGERYPYLKIT-DEPFPRLVVTRYRGQDGAL 127 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT-RPCLLFQIKRCSGPCTGEISSEK 179 Y GP+ V + + ++R F LR+C + + RPC+ + RC PC G + ++ Sbjct: 128 YLGPYVRVSELRTLLRFIERFFPLRTCKAPCDPNPSRRPCMNHALGRCLAPCAGLCTEQE 187 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 Y E V + L G +L E++ MNQA +E A RD + A+ I Sbjct: 188 YRERVADVALLLQGKGTDLVERLRCRMNQAARNLAFEEAARLRDTIRAIWRIGRQQ 243 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 88/303 (29%), Positives = 129/303 (42%), Gaps = 18/303 (5%) Query: 310 EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDF 369 + T L+E + + + R I + E L Sbjct: 202 KGTDLVERLRCRMNQAARNLAFEEAARLRDTIRAIWRIGRQQPRVAAPGEDEPWQALLRV 261 Query: 370 TKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCA 429 + LP +P RIE YD SH G VG VV + + YR+F+L ++ DD Sbjct: 262 QEALGLPTLPWRIEGYDISHTAGGQEVGVRVVFEQGRPNPSLYRRFHL--DESLGGDDFR 319 Query: 430 MMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE 489 +R L RRF + N K P +V++DGG QL A+ L+ V Sbjct: 320 ALRETLSRRFRK--------NPGGKPALGEDDPRPQLVLIDGGPIQLEFARETLEGQGVF 371 Query: 490 NRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR 549 ++++AK + E F + L L D L +Q++RDEAHRFA+T+HR RR Sbjct: 372 T--PLVALAKREE-----ELFLPGRANPLRLPREDLALRLLQQVRDEAHRFAVTSHRSRR 424 Query: 550 KKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 + S L+ I GIG + LL FG+ K I+R +PE LA GI +A +I Sbjct: 425 DRLLRASRLESIPGIGKGKAAQLLSRFGSTKAIARMAPEDLARTPGIGTVLAQRILTALK 484 Query: 609 KNT 611 + Sbjct: 485 EEQ 487 >gi|315302220|ref|ZP_07873137.1| UvrABC system protein C [Listeria ivanovii FSL F6-596] gi|313629410|gb|EFR97626.1| UvrABC system protein C [Listeria ivanovii FSL F6-596] Length = 366 Score = 240 bits (612), Expect = 5e-61, Method: Composition-based stats. Identities = 97/360 (26%), Positives = 165/360 (45%), Gaps = 20/360 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG Y D +LY+GK+ L+ R+KSY + ++ QI ++ +T + Sbjct: 12 LPESPGCYIYKDENQEILYIGKSKCLKNRVKSYFTGK-QVGKTARLVRQIRDLELIITSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLE +I++ +P FN L++ S+PYI IT+ K P + ++ YFGP+ Sbjct: 71 EKEALLLEMILIQKYQPPFNRQLKEGPSYPYIKITN-EKNPHIEVVVETKADGAHYFGPY 129 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + +T +++ + L C RPCL + + C GPC EI+ Y + Sbjct: 130 PGRYSARQTAMLIEKLYPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIAPAVYQAQIQ 185 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242 + +FL G +K K+ ++M AT K +E A RD + A++ I+ Sbjct: 186 KITRFLEGDVKAVKTKLTQDMQVATEKLQFERAAELRDTIQAINETIEKQHIIFPGLKNR 245 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300 D Y N + F G GT + + + L+ F+ QFY D P Sbjct: 246 DLIGCYEQDNHLSVFVFFVRNGAINGTKWHVFEIQK--SLQEDLADFINQFYQDPNNIQP 303 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + +L++E+ ++ SL + + P++G K+K I A+ NA ++ + Sbjct: 304 KELLIAEKIDKMSLSASL-------QKVTSFPQKGGKKKQINLAVENAKSTYIAYAKMKE 356 >gi|260186359|ref|ZP_05763833.1| excinuclease ABC subunit C [Mycobacterium tuberculosis CPHL_A] gi|289447016|ref|ZP_06436760.1| excinuclease ABC uvrC [Mycobacterium tuberculosis CPHL_A] gi|289419974|gb|EFD17175.1| excinuclease ABC uvrC [Mycobacterium tuberculosis CPHL_A] Length = 208 Score = 240 bits (611), Expect = 7e-61, Method: Composition-based stats. Identities = 74/196 (37%), Positives = 108/196 (55%), Gaps = 4/196 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA +L+ R+ SY + R +++ + +TV Sbjct: 13 SIPVEPGVYRFRDQHGRVIYVGKAKSLRSRLTSYFADVASLAPRTRQLVTTAAKVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TEVEAL LE IK PRFN+ RDDKS+P + +T + P L +R YFG Sbjct: 73 GTEVEALQLEYTWIKEFDPRFNVRYRDDKSYPVLAVTLGEEFPRLMVYRGPRRKGVRYFG 132 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180 P++ A+ +T++ L R F R+C+ VF+ RPCLL I +CS PC G + + ++ Sbjct: 133 PYSHAWAIRETLDLLTRVFPARTCSAGVFKRHRQIDRPCLLGYIDKCSAPCIGRVDAAQH 192 Query: 181 MEFVHEAKKFLSGGNH 196 + V + FLSG Sbjct: 193 RQIVADFCDFLSGKTD 208 >gi|294101992|ref|YP_003553850.1| excinuclease ABC, C subunit [Aminobacterium colombiense DSM 12261] gi|293616972|gb|ADE57126.1| excinuclease ABC, C subunit [Aminobacterium colombiense DSM 12261] Length = 491 Score = 240 bits (611), Expect = 7e-61, Method: Composition-based stats. Identities = 87/244 (35%), Positives = 126/244 (51%), Gaps = 3/244 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTVT 63 +P PGVY M D G+V+YVGKA +L+KR+ SY + R+ ++ I +I T Sbjct: 12 NLPLRPGVYIMRDEEGKVIYVGKAKSLRKRVSSYFRHEGFASPRLRKLVESIADISVIRT 71 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EAL++E+ +IK+ KP FNI L+ ++ +PYI IT P L R +Y G Sbjct: 72 ETEAEALIVESRLIKKYKPFFNIDLKMNERYPYIKIT-DDAFPRLVITRHKDDDGATYLG 130 Query: 124 PFASVDAVEKTINSLQRTFFLRSCA-DSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 PF S V + +R F LRSC + + RPCL + + RC PC S +Y E Sbjct: 131 PFISAKDVRALLRVAERYFPLRSCKAEVKPDKKKRPCLNYSLGRCLAPCAALCSETEYRE 190 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242 V + L+G + L E+I + M +A D+E A HRD ++A+ + S R Sbjct: 191 RVDDVILLLTGQSSELVERIRKRMEEAAHSLDFEKAARHRDAISAIWRLSRQRISSSLRE 250 Query: 243 DCFS 246 D S Sbjct: 251 DIDS 254 Score = 204 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 88/309 (28%), Positives = 144/309 (46%), Gaps = 27/309 (8%) Query: 312 TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS--HQMILKDF 369 + L+E + + K R I + + + L +I L Sbjct: 204 SELVERIRKRMEEAAHSLDFEKAARHRDAISAIWRLSRQRISSSLREDIDSETWEALNKL 263 Query: 370 TKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCA 429 + +P RI+ +D SH+ G G +VV + + YR+F + V+ DD Sbjct: 264 QCLLHMDTLPWRIDGFDISHMAGHETYGVVVVFEQGVSNPSLYRRFKVRT--VEGIDDFR 321 Query: 430 MMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE 489 + V++RR+S++++N E L P ++++DGG QL A+ L +L +E Sbjct: 322 SIEEVVKRRYSKMLENNEPL--------------PQLILIDGGPIQLEFAKKALSELKME 367 Query: 490 NRITIISIAKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKR 548 +I IS+AK E + + E + L+ DP+L +QR+RDE+HRFAI +HR+ Sbjct: 368 -KIPAISLAKRE------ELIYHNEKEPPIRLDWTDPVLRLLQRVRDESHRFAIKSHRRG 420 Query: 549 RKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 R S L+EI G+G LL SFG+VK I+ +PE L ++GI +A I F Sbjct: 421 RGMVLTRSVLEEIPGVGKHMAASLLSSFGSVKKIAVLTPEELMQVKGIGPVLAKNIAAFF 480 Query: 608 HKNTSHTPT 616 + + T Sbjct: 481 RGEDNESET 489 >gi|23010825|ref|ZP_00051384.1| COG0322: Nuclease subunit of the excinuclease complex [Magnetospirillum magnetotacticum MS-1] Length = 209 Score = 239 bits (610), Expect = 9e-61, Method: Composition-based stats. Identities = 86/154 (55%), Positives = 112/154 (72%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY+M D G VLYVGKA NL+ R+ SY H++RI MI+Q + F T Sbjct: 55 TLPTSPGVYRMFDAKGDVLYVGKAKNLKARVGSYARGQAHSNRIARMIAQTAAMEFVTTA 114 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLEAN+IK+LKPRFN+L+RDDKSFPYIL+T P + KHR + +G+Y+GP Sbjct: 115 TETEALLLEANLIKQLKPRFNVLMRDDKSFPYILLTADGPAPQIVKHRGARRRKGNYYGP 174 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP 158 FASV AV +T+N+LQR F +R+C+DS + +RTRP Sbjct: 175 FASVWAVNRTVNALQRAFLMRTCSDSYYENRTRP 208 >gi|309800898|ref|ZP_07695030.1| putative excinuclease ABC subunit C [Bifidobacterium dentium JCVIHMP022] gi|308222434|gb|EFO78714.1| putative excinuclease ABC subunit C [Bifidobacterium dentium JCVIHMP022] Length = 353 Score = 239 bits (610), Expect = 9e-61, Method: Composition-based stats. Identities = 96/345 (27%), Positives = 159/345 (46%), Gaps = 37/345 (10%) Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359 P +++ E LE G V I V +G+K++++++A NA ++ + + Sbjct: 2 PREVVVPIEPARREDLERWLSGLRGSAVTIRVASRGDKKQLMDRASDNARQAMQRSKMSR 61 Query: 360 ISHQMI----LKDFTKKFALPHIPKRIEIYDNSHIMG-CSAVGCMVVVGENGFVKNQYRK 414 IS + D K L P RIE YD S+ +G V MVV + K++YR+ Sbjct: 62 ISDMGARTTAMNDVAKALGLEQAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSEYRR 121 Query: 415 FNLHPNDVKTQ-DDCAMMRMVLERRFSQ---------LIKNEE---------------NL 449 F + D + DD + + L RRF + NE+ N+ Sbjct: 122 FAIRGADGQGALDDLSALYETLTRRFRHGNIAGDTGESMDNEQREARISRTCENTDPGNV 181 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 F P++V++DGG+ Q+ AA L+ V++ + + +AK + E Sbjct: 182 PIRQNTDRRHFAYKPNLVVVDGGRPQVMAAARALEDCGVDD-VAVCGLAKRLE-----EV 235 Query: 510 FFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRK 568 + ++L + +Y +QR+RDE+HRFAIT HR+ R+K A S LD+I GIG + Sbjct: 236 WVPDDDYPIILKRQSEGMYLLQRVRDESHRFAITYHRRTRRKGALRSVLDDIPGIGESYQ 295 Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 + LL FG+V+ + +S E ++GI + A IY+ H Sbjct: 296 KRLLNHFGSVRAMREASVEDFEQVKGIGRAKAESIYHALHAQDQD 340 >gi|332978117|gb|EGK14853.1| excinuclease ABC subunit C [Desmospora sp. 8437] Length = 364 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 103/379 (27%), Positives = 173/379 (45%), Gaps = 32/379 (8%) Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D F +K + C+Q F G+ E + ++ QFY +KP Sbjct: 8 DRDVFGYAADKGMMCVQIFFVRQGKLIERDVSIFPHYGEE--REDFLSYVTQFYHEKPV- 64 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 L +E ++ + V + +P++G K++++E A NA + ++ Sbjct: 65 ----LPKEINLPEAVDAGLLGDWLTGVHVHIPQRGMKKRLVEMANENARIALEERFKLLE 120 Query: 361 SHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417 Q + + P+RIE +DNS+I G V MVV + K +YRKF + Sbjct: 121 RDQGRTVEAIHRLGEAMGIGSPRRIEAFDNSNIQGTDPVSAMVVFTDGVPDKKEYRKFKI 180 Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477 V+ DD MR V+ RR+++++K PD+V++DGG+GQ+S Sbjct: 181 RS--VQGPDDYETMREVIRRRYTRVLKEN--------------LPLPDLVLVDGGRGQMS 224 Query: 478 AAQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 AA VL+ +L + I + + K + F + L Y +QR+++E Sbjct: 225 AAIDVLENELGL--FIPVAGLVKNERHKTAG-LLFGDPPSEVELRRGSREFYLLQRIQEE 281 Query: 537 AHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 HRFAIT HR+ R K S LDEI G+G RK++L + FG+++ + + S E GI Sbjct: 282 VHRFAITFHRQTRGKTMTRSLLDEIPGVGKKRKQILYKHFGSLERMRQGSVEEYREA-GI 340 Query: 596 SKKIACKIYNHFHKNTSHT 614 ++A KI +H + + + Sbjct: 341 GDQLARKILDHLRRKDADS 359 >gi|257469477|ref|ZP_05633569.1| excinuclease ABC subunit C [Fusobacterium ulcerans ATCC 49185] gi|317063721|ref|ZP_07928206.1| excision endonuclease subunit UvrC [Fusobacterium ulcerans ATCC 49185] gi|313689397|gb|EFS26232.1| excision endonuclease subunit UvrC [Fusobacterium ulcerans ATCC 49185] Length = 336 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 92/318 (28%), Positives = 160/318 (50%), Gaps = 11/318 (3%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + +PE PGVY M G+++YVGKA NL+ R+ SY + + + + ++ I +I F Sbjct: 8 IKKIDIPENPGVYLMK-KNGKIIYVGKAKNLKNRVSSYFNREHESEKTKELVKNIEDIEF 66 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYK---HRDSSTI 117 + +E++A +LE N+IK+ P++NI L+D+K++PYI I+ + P + R Sbjct: 67 IICNSEIDAFVLENNLIKKYSPKYNIALKDEKTYPYIKIS-RETFPNIKMIRTTRALDNK 125 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 G YFGP+ ++ + F +R C + + RPCL + +K C GPCT + Sbjct: 126 TGMYFGPYPQGG--WNLKKNIVKIFKIRDCNRDMNKVYARPCLKYFMKMCPGPCTYKNIK 183 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 E+Y E V AK+ L G ++ E++ + M +A+ +E AI++R+++ + + N+ + Sbjct: 184 EEYNELVEGAKQLLKGQGRSVIEELKKKMEKASEDMKFEEAIMYREQIKEIENTVNNQIT 243 Query: 238 IYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 Y D F++ N I G+ G + + + IL + FY Sbjct: 244 EYGKELDEDIFNIKEENNRVFICVLNVRDGKILGKISTNIDLK-DKIYENILEVVVMAFY 302 Query: 295 TDKPCPENILLSEEAEET 312 P P+NI+ S E E Sbjct: 303 NKHPIPQNIVFSSEYENE 320 >gi|325106964|ref|YP_004268032.1| excinuclease ABC C subunit domain protein [Planctomyces brasiliensis DSM 5305] gi|324967232|gb|ADY58010.1| excinuclease ABC C subunit domain protein [Planctomyces brasiliensis DSM 5305] Length = 496 Score = 236 bits (603), Expect = 6e-60, Method: Composition-based stats. Identities = 89/254 (35%), Positives = 129/254 (50%), Gaps = 6/254 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 P PGVY M D RV+YVGKA NL+ R SY + R ++ +I +I Sbjct: 68 KVRTFPTTPGVYLMKDAEDRVIYVGKAVNLRSRAGSYFLSAAAEERRTADLVREIADIDH 127 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TEV+ALLLEA +IK ++PRFN L+DDK+FPY+ IT + P + R T Sbjct: 128 ITTETEVDALLLEARLIKDIQPRFNTELKDDKTFPYLEITTREDFPRVEFTRTPQTRGTK 187 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEI 175 +GPF S + +TI LQ+ F R+C AD RPCLL IK+C+ PC I Sbjct: 188 LYGPFTSASQLRETITVLQKIFRFRTCGLDIEADDEKWKWYRPCLLASIKQCTAPCNLRI 247 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 S E Y + + + + FL G L ++ + M A + +E A RD++A+L ++ Sbjct: 248 SKEDYKKDIQKLRMFLDGNRTRLFREMEKEMKTAAKELQFEKAANLRDQIASLKSLELRG 307 Query: 236 DSIYNRMDCFSLYH 249 + ++ Sbjct: 308 EIDTHQQPEVFFID 321 Score = 127 bits (319), Expect = 6e-27, Method: Composition-based stats. Identities = 59/191 (30%), Positives = 93/191 (48%), Gaps = 22/191 (11%) Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 + K LP +P+RIE D +H+ G V +V + K+ YR+F + V Sbjct: 324 KGMTGLKKILNLPDLPRRIEGMDIAHLQGGETVASLVQFIDGLPFKHGYRRFKIRT--VD 381 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD A MR V+ RR L + E S+PD++++DGGKGQL+AA + Sbjct: 382 GVDDFASMREVVSRRMRGLQQRGE--------------SFPDLLLIDGGKGQLNAALQAM 427 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 + + V+ +T I +AK + E + + E ++ L +Q +RDEAHRFA Sbjct: 428 RAIGVDPPMT-IGLAKREE-----EIYLPGESEPKRVSRDSFGLRLLQYVRDEAHRFAQH 481 Query: 544 THRKRRKKAAY 554 H R+K+ + Sbjct: 482 YHHLLRRKSTF 492 >gi|153877572|ref|ZP_02004286.1| UvrABC system protein C [Beggiatoa sp. PS] gi|152065964|gb|EDN65714.1| UvrABC system protein C [Beggiatoa sp. PS] Length = 217 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 92/203 (45%), Positives = 124/203 (61%), Gaps = 16/203 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P+ PGVY MLD AG VLYVGKA +L+KRI Y +N + + +++QI NI TVT Sbjct: 15 TVPKKPGVYCMLDSAGTVLYVGKARHLKKRIAGYFTKSNQSPKNRALVAQIANIEVTVTH 74 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--------- 115 TE EALLLE +IK +PR+NILLRDDKS+PYI ++ H P L +R + Sbjct: 75 TESEALLLENTLIKTHQPRYNILLRDDKSYPYIYLS-DHPFPRLSLYRGKNPPQSSARSK 133 Query: 116 ------TIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSG 169 + + YFGP+ V AV +T+N LQ+ F +R C +S FR+R+RPCL +QIKRC+ Sbjct: 134 KNPTGESKRARYFGPYPYVQAVHETLNLLQKLFPIRQCRESFFRNRSRPCLQYQIKRCTA 193 Query: 170 PCTGEISSEKYMEFVHEAKKFLS 192 PC G I + Y E V + Sbjct: 194 PCVGLIDEDSYHEEVQKCGIVFR 216 >gi|153872318|ref|ZP_02001248.1| UvrABC system protein C [Beggiatoa sp. PS] gi|152071220|gb|EDN68756.1| UvrABC system protein C [Beggiatoa sp. PS] Length = 277 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 93/253 (36%), Positives = 138/253 (54%), Gaps = 24/253 (9%) Query: 379 PKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERR 438 P+R+E +D SH G + V VV G ++YR+FN+ ++ DD A M+ L RR Sbjct: 25 PQRLECFDISHTQGEATVASCVVFDTEGPRNSEYRRFNI--ENITPGDDYAAMQQALNRR 82 Query: 439 F---SQLIKNEENLNFHPKKQEYSFPS-----WPDVVILDGGKGQLSAAQGVLKKLNVEN 490 + E + ++ S P PD++++DGG GQ++ A+ VL KL + Sbjct: 83 YQGNRWKGTGEREIREIGEQALDSMPQQAQNLLPDILLVDGGIGQVNVAKTVLNKLQLT- 141 Query: 491 RITIISIAKGPKRSAGMEKFFVKKGE------------ALVLNMRDPILYFIQRLRDEAH 538 I II +AKGP R G+E + + E + L P L+ IQ++RDEAH Sbjct: 142 HIRIIGVAKGPGRKPGLETLILSEDETCFPASGSSSPVSFTLPKDSPALHLIQQIRDEAH 201 Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RFAI HRKRR KA + S L+EI+GIG R++ LL FG ++ +SR+ E LA++ GI + Sbjct: 202 RFAIVGHRKRRAKARHTSILEEIDGIGLKRRQRLLSYFGGLQGVSRAGVEDLATVPGIER 261 Query: 598 KIACKIYNHFHKN 610 +A KIY+ F Sbjct: 262 PLAQKIYDFFQAE 274 >gi|262366021|gb|ACY62578.1| excinuclease ABC subunit C [Yersinia pestis D182038] Length = 245 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 91/262 (34%), Positives = 143/262 (54%), Gaps = 23/262 (8%) Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 +LS + + +K+ K L R+E +D SH MG V VV NG V+++ Sbjct: 1 MITRLSQQSTIHQRMKELAKVLKLD-EINRMECFDISHTMGEQTVASCVVFDANGPVRSE 59 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YR++N+ + + DD A M VL+RR+ + + +++ PDV+ +DG Sbjct: 60 YRRYNI--SGITPGDDYAAMAQVLKRRYGKALDDQK---------------IPDVIFIDG 102 Query: 472 GKGQLSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPIL 527 GKGQLS A V LNV + + ++ +AKG R AG+E F+ +GE L P L Sbjct: 103 GKGQLSQAFDVFASLNVPWDKQKPLLVGVAKGSDRKAGLETLFLASEGEGFSLPPDSPAL 162 Query: 528 YFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586 + IQ +RD++H AIT HR+RR K S L+ I G+GP R+++LL+ G ++ + +S Sbjct: 163 HLIQHIRDDSHNHAITGHRQRRSKVKNTSALEMIEGVGPKRRQVLLKYMGGLQPLFNASV 222 Query: 587 ETLASIEGISKKIACKIYNHFH 608 E +A + GIS+ +A KI+N Sbjct: 223 EEIAKVPGISQALAEKIHNALK 244 >gi|222837839|gb|EEE76204.1| predicted protein [Populus trichocarpa] Length = 267 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 89/272 (32%), Positives = 134/272 (49%), Gaps = 11/272 (4%) Query: 343 QALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKR---IEIYDNSHIMGCSAVGCM 399 A NA + L+ E S Q + + L IE +D SH G + Sbjct: 1 MAQKNADIQMARLLAEEGSQQARTRALVEALDLACENLDELTIECFDISHTAGEATQASC 60 Query: 400 VVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS 459 VV + ++YR+FN+ + DD A MR VL RR+S++ + + Sbjct: 61 VVFHHHKMQSSEYRRFNIEG--ITGGDDYAAMRQVLTRRYSRVAEAQREAGGAELT--GK 116 Query: 460 FPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA-L 518 P PD+V++DGGKGQ+S A+ V ++L ++ I+ + KG R G+E+ G + Sbjct: 117 QPQLPDLVLVDGGKGQVSMAREVFEQLGLDVS-RIVGVEKGEGRKVGLEELVFADGREKI 175 Query: 519 VLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYS--PLDEINGIGPLRKRLLLQSFG 576 L L + ++RDEAHRFAIT R R K L+EI G+GP ++ LLQ FG Sbjct: 176 YLGYDSAALMLVAQIRDEAHRFAITGMRAARAKVRVGGGKLEEIPGVGPKKRARLLQRFG 235 Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNHFH 608 V+ +S ++ E L S++GIS +A IY H Sbjct: 236 GVRGVSEATVEDLCSVDGISAALAEDIYRALH 267 >gi|296124345|ref|YP_003632123.1| excinuclease ABC subunit C [Planctomyces limnophilus DSM 3776] gi|296016685|gb|ADG69924.1| excinuclease ABC C subunit domain protein [Planctomyces limnophilus DSM 3776] Length = 465 Score = 231 bits (588), Expect = 3e-58, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 126/247 (51%), Gaps = 6/247 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRF 60 + P PGVY M D GRV+YVGKA NL+ R SY R +I +I++I F Sbjct: 38 KVKTFPTTPGVYLMKDARGRVIYVGKAVNLRSRAGSYFTKQAAIDRRTADLIPEIHDIDF 97 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +EV+ALLLE+ +IK ++PRFN L+DDK+FPY+ IT + P + R + Sbjct: 98 LHADSEVDALLLESRLIKDIQPRFNSDLKDDKTFPYLQITTREPFPRIEFTRRPKSRGVK 157 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH-----RTRPCLLFQIKRCSGPCTGEI 175 FGPF S + I LQ+ F R+C+ + + RPCLL + +C+ PC I Sbjct: 158 LFGPFTSARKLRGAIAVLQKIFRFRNCSLDIDPNEEKWRWFRPCLLASLGQCTAPCNLRI 217 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 S E Y V FL G L + + R M +A+ + +E A RD++ AL +Q Sbjct: 218 SKEDYRRDVRRLIMFLEGKKERLLKVMNREMLEASKELKFEKAARLRDQIKALMTLQERG 277 Query: 236 DSIYNRM 242 D + Sbjct: 278 DLASHAQ 284 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 64/191 (33%), Positives = 93/191 (48%), Gaps = 22/191 (11%) Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 L K F L +P+RIE D +H+ G V +V + K Y++F + V Sbjct: 294 KGLLGLKKVFGLSTLPRRIEGVDIAHLQGGETVASLVQFIDGVPFKQGYKRFKIRT--VD 351 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD A MR V+ RRF +L + EN +PD++++DGGKGQL AA L Sbjct: 352 GVDDFASMREVVSRRFRRLDQEGEN--------------FPDILLIDGGKGQLGAAMEAL 397 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 K + V +IS+AK + E F + E VL+ L +Q +RDE+HRFA Sbjct: 398 KSIEV-KLPLVISLAKREE-----EIFLPGESEPKVLSRHSYALRLLQSVRDESHRFAQQ 451 Query: 544 THRKRRKKAAY 554 H R+K+ + Sbjct: 452 YHHLLRRKSTF 462 >gi|289523036|ref|ZP_06439890.1| excinuclease ABC subunit C [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503579|gb|EFD24743.1| excinuclease ABC subunit C [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 504 Score = 230 bits (587), Expect = 4e-58, Method: Composition-based stats. Identities = 78/240 (32%), Positives = 126/240 (52%), Gaps = 4/240 (1%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRF 60 +P PGVY ++LYVGKA +L+KR+ SY N + R+ ++ I +I F Sbjct: 18 KVRNLPNRPGVYIFHGEEDKILYVGKAKSLKKRVSSYFRHNGFASPRLRKLVELIRDISF 77 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE EAL++EA +IK +P FNI L+ + +PYI IT + P + R + + Sbjct: 78 IRTETEAEALIVEARLIKHYQPFFNIELKMGERYPYIKIT-RDPYPKVEITRHKADDGST 136 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178 Y GP+ V + + + ++R F LR+C+ ++ ++RPCL + + +C GPC G + Sbjct: 137 YIGPYTRVKELRQVLRLMERYFPLRNCSLNLKEAPVQSRPCLRYNMGKCLGPCAGLCTQR 196 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y E V + FL G L E + + MN+A +E A +RD + A+ + S Sbjct: 197 EYQELVDDVILFLRGQTSALVESLRKKMNEAVESLAFEKAAFYRDAIRAIWRLSRQQISF 256 Score = 176 bits (445), Expect = 1e-41, Method: Composition-based stats. Identities = 70/266 (26%), Positives = 124/266 (46%), Gaps = 23/266 (8%) Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 S + + L+ + + RIE D SH+ G G VV + Sbjct: 253 QISFALRDPLDKEIWKALERLQEVLGIAFPFWRIEGCDISHLSGRETYGVFVVFEQGMPN 312 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 + YR++ + V+ DD + ++ RR+S L++ P +++ Sbjct: 313 PSLYRRYVIKT--VEGIDDFRSIEEIVRRRYSSLLE--------------KNMPLPQLLL 356 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 +DGG QLS A L +L +EN I +++AK + E + L L + DP L Sbjct: 357 VDGGALQLSFALKALNELGIEN-IYAVALAKEEE-----ELYLPDSRRPLKLPLDDPGLN 410 Query: 529 FIQRLRDEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 ++++RDEAHRFA+++H + K+ + S L++I G+G R LL +FG+V I+ +PE Sbjct: 411 LLRKIRDEAHRFALSSHNNKFNKRYSRSALEDIPGVGKRRAAALLAAFGSVSHIASKTPE 470 Query: 588 TLASIEGISKKIACKIYNHFHKNTSH 613 L ++ I ++A I + + + Sbjct: 471 ELEKVDNIGPRLAKHILMYLKGDNDN 496 >gi|297171123|gb|ADI22134.1| nuclease subunit of the excinuclease complex [uncultured myxobacterium HF0200_19H16] Length = 379 Score = 230 bits (587), Expect = 5e-58, Method: Composition-based stats. Identities = 105/397 (26%), Positives = 170/397 (42%), Gaps = 30/397 (7%) Query: 229 SHIQNHNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSY 288 Q + D +Y I G+ G + T I + Sbjct: 1 MERQAVASPDFVDRDVIGIYREGPAVEIHVMRTRQGRLIGAKRYSYSDLETPTTDIISDF 60 Query: 289 FLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA 348 + + + P IL+ L + + K+K+ P++G K++++ A NA Sbjct: 61 VSQYYSHENEAPTEILVPTPVVFGGSLGVLLGETQNKKIKLFTPQRGTKKRLLTLANKNA 120 Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 ++ T K E + L+ KK L + P+ +E YD SH G V V + Sbjct: 121 KQAFTDKKRQEGEAKTTLERLQKKLRLRNEPRHLECYDISHFQGTHIVASAVAFVDGIPD 180 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 K+ YR F + QDD M V+ RR + ++ + PD+++ Sbjct: 181 KSLYRHFKIRSTQ--EQDDFQSMYEVISRRTRRGLEE---------------SNLPDLMV 223 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAK--------GPKRSAGMEKFFVKKGEALVL 520 +DGGKGQLS+A+ L V+ + +IS+AK + + F + +VL Sbjct: 224 IDGGKGQLSSARAALDDHGVDW-VDLISLAKSRIKTRNQQDVQRSSERVFVHGIKDPIVL 282 Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVK 579 L+ + R RDEAHRFAI RK+R+K + S L++I GIGP +++ LL G+ K Sbjct: 283 QANSSELFLLMRARDEAHRFAIEFQRKKRRKASTQSALEKIPGIGPKKRKQLLAKLGSAK 342 Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616 + ++S E L S+ G K+A I +F N PT Sbjct: 343 RVEQASLEELQSVVG--PKLAESIRKYF-SNFPQAPT 376 >gi|295110873|emb|CBL27623.1| excinuclease ABC, C subunit [Synergistetes bacterium SGP1] Length = 523 Score = 230 bits (586), Expect = 6e-58, Method: Composition-based stats. Identities = 89/299 (29%), Positives = 127/299 (42%), Gaps = 8/299 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTVT 63 +PE PGVY M D G V+YVGKA L++R+ SY SN + R+ ++S + +I T Sbjct: 43 SLPERPGVYIMRDAEGTVIYVGKAIKLRRRVSSYFRHSNFASPRLRKLVSLVEDISVIRT 102 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EAL++EA +I+R P FN+ L+ + +PYI +T P L R Y G Sbjct: 103 ETEAEALIVEARLIRRYSPFFNVDLKMNDRYPYIRVT-DEAFPRLEITRVKRDDGAVYLG 161 Query: 124 PFASVDAVEKTINSLQRTFFLRSCA-DSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 PF S + + +R F LR C D RPC+ + + G C G + +Y E Sbjct: 162 PFVSAGNIRSLMRLAERYFPLRVCRADLKPDPGKRPCIEYSLGHSMGACAGLCTQAEYRE 221 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242 V + L G L E++ R M+ A + D+E A RD + AL I S + Sbjct: 222 RVGDVILLLEGNTRELIERLHRRMDAAARRMDFEEAAHCRDTMRALWRISRQRVSSALQE 281 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 D S + R D T F +P P Sbjct: 282 DLDS-----ETWHVLNQTQRAFGLRTIPWRMDAFDISHTAGHDTYGCCVVFEQGRPNPS 335 Score = 210 bits (535), Expect = 5e-52, Method: Composition-based stats. Identities = 80/315 (25%), Positives = 136/315 (43%), Gaps = 27/315 (8%) Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE--IS 361 +L E L+E + ++ + R + + + + L + Sbjct: 227 ILLLEGNTRELIERLHRRMDAAARRMDFEEAAHCRDTMRALWRISRQRVSSALQEDLDSE 286 Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421 +L + F L IP R++ +D SH G GC VV + + YR+F + Sbjct: 287 TWHVLNQTQRAFGLRTIPWRMDAFDISHTAGHDTYGCCVVFEQGRPNPSLYRRFRIRGLA 346 Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481 DD A + + RR+ ++ E P + ++DGG QL A Sbjct: 347 EGEVDDFASIEETVRRRYRHVLDQSE--------------PMPQMALIDGGPVQLEFAMR 392 Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKK--GEALVLNMRDPILYFIQRLRDEAHR 539 L +L +E + ++++A+ E F+ + + L+ P+L +QR+RDE HR Sbjct: 393 ALAELEME--LPLVALAERE------ELLFLPNRPDDPIRLDRSSPVLQLMQRMRDEVHR 444 Query: 540 FAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FAITTHR+ R + S L++I GIG R LL FG+ + I+ S + LA G+ Sbjct: 445 FAITTHRRARNARMKRSSLEDIPGIGRARASQLLVRFGSTERIAALSTDELAGAPGVGPV 504 Query: 599 IACKIYNHFHKNTSH 613 +A KI H + + + Sbjct: 505 LARKILEHLNGSDAQ 519 >gi|218709936|ref|YP_002417557.1| putative excinuclease ABC subunit C [Vibrio splendidus LGP32] gi|218322955|emb|CAV19132.1| putative excinuclease ABC subunit C [Vibrio splendidus LGP32] Length = 246 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 83/262 (31%), Positives = 137/262 (52%), Gaps = 21/262 (8%) Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410 + T K++ +++ K+ + ++ I R+E +D SH MG S + VV + G VK Sbjct: 3 AITTKINHKMTINQRFKELQEVLSMDVIK-RMECFDISHTMGESTIASCVVYNQEGPVKP 61 Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470 +YR++N+ + DD A M LERR+S+ + ++ PD++ +D Sbjct: 62 EYRRYNI--TGITGGDDYAAMAQALERRYSKQLDVDK---------------IPDIIFID 104 Query: 471 GGKGQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 GGKGQL+ A ++ + + R ++ IAKG R G+E +GE L P L+ Sbjct: 105 GGKGQLNRAHEIISQYWGDWPFRPRMMGIAKGVTRKPGLETLVTLEGEEFNLPSDAPALH 164 Query: 529 FIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 IQ +RDE+H AI HR +R K S L+ I G+GP R++ LL+ G ++ + R++ E Sbjct: 165 LIQHIRDESHNHAIAGHRAKRGKTRRTSALEGIEGVGPKRRQSLLKYMGGLQELKRATVE 224 Query: 588 TLASIEGISKKIACKIYNHFHK 609 +A + GIS +A IY + Sbjct: 225 EIAKVPGISHSLAENIYQALKQ 246 >gi|330723482|gb|AEC45852.1| excinuclease ABC subunit C [Mycoplasma hyorhinis MCLD] Length = 561 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 125/595 (21%), Positives = 219/595 (36%), Gaps = 61/595 (10%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + P+ GVY+ LD VLYVGKA N+ R+K Y + ++++ +I+Q ++I F Sbjct: 8 IEKKDFPKTFGVYKFLDEYKNVLYVGKAENIYNRMKQYAAGHINSYKTHSLINQTDDIEF 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T ++ AL+LE IK KP FNILL+DD ++PYI I + + + Sbjct: 68 FITNSKANALILEDKWIKLYKPNFNILLKDDHTYPYIEINKNLD---IKLAYKIANKRNF 124 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGPF L ++K +G +S E+ Sbjct: 125 YFGPFVKKSDAWNLTRF----------------------LESKVKYENGLPINSLSPEEK 162 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--- 237 + + KK L N + ++I +E+Y A + ALS +Q +S Sbjct: 163 NQKLEICKKILKLKNASFLKQILEEEALFVQQENYVRANELKQIRQALSDLQQQKESITL 222 Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 +D + + I F+ G L + FL+ +Y + Sbjct: 223 ANNKDVDFIFVAQYQEFVFISLLFYRNGSLFSYKNLNLSLIFNLE--ETFIMFLKNYYKN 280 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P+ I+L E + + + K + Sbjct: 281 NLIPDQIVLDNLWETLDFKSELSSLNITFSNNKKLDLIMQMAK--DNNQFFVQERLKILQ 338 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + ++L+ ++ + +I I DNSH + V ++ R FN Sbjct: 339 KEQQKENIVLEKLSQDLKVAKAD-KIMIIDNSHSNLQNIVTGVIFFINGVHQSKFNRFFN 397 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + N + D + +++ FS PD++ +DG + Q+ Sbjct: 398 VSKNL---KSDIDFIYESIKKYFS-----------------IKSFLKPDLIFVDGAQQQI 437 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 AQ LK+ N+ + + I K + + + V N+ F+ ++ + Sbjct: 438 KKAQQALKESNIY--VPLFGIVKNKNHKTH---YVLDQNLQKVENISQESFNFLSNMQIQ 492 Query: 537 AHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 FA HR + K S LD++N I + LL F T K I ++ E L Sbjct: 493 VDEFAKIKHRNKNIKILTSSFLDQLN-IDKKTQDKLLTYFKTYKKIKEATEEELK 546 >gi|304372929|ref|YP_003856138.1| Excinuclease ABC subunit C [Mycoplasma hyorhinis HUB-1] gi|304309120|gb|ADM21600.1| Excinuclease ABC subunit C [Mycoplasma hyorhinis HUB-1] Length = 561 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 126/595 (21%), Positives = 219/595 (36%), Gaps = 61/595 (10%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + P+ GVY+ LD VLYVGKA N+ R+K Y + ++++ +I+Q ++I F Sbjct: 8 IEKKDFPKTFGVYKFLDEYKNVLYVGKAENIYNRMKQYAAGHINSYKTHSLINQTDDIEF 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +T ++ AL+LE IK KP FNILL+DD ++PYI I + + + Sbjct: 68 FITNSKANALILEDKWIKLYKPNFNILLKDDHTYPYIEINKNLD---IKLAYKIANKRNF 124 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGPF L ++K +G +S E+ Sbjct: 125 YFGPFVKKSDAWNLTRF----------------------LESKVKYENGLPINSLSPEEK 162 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--- 237 + + KK L N + ++I +E+Y A + ALS +Q +S Sbjct: 163 NQKLEICKKILKLKNASFLKQILEEEALFVQQENYVRANELKQIRQALSDLQQQKESITL 222 Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 +D + + I F+ G L + FL+ +Y + Sbjct: 223 ANNKDVDFIFVAQYQEFVFISLLFYRNGSLFSYKNLNLSLIFNLE--ETFIMFLKNYYKN 280 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P+ I+L E + + + K + Sbjct: 281 NLIPDQIVLDNLWETLDFKSELSSLNITFSNNKKLDLIMQMAK--DNNQFFVQERLKILQ 338 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + ++L+ ++ + +I I DNSH + V ++ R FN Sbjct: 339 KEQQKENIVLEKLSQDLKVAKAD-KIMIIDNSHSNLQNIVTGVIFFINGVHQSKFNRFFN 397 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + N + D M +++ FS PD++ +DG + Q+ Sbjct: 398 VSKNL---KSDIDFMYESIKKYFS-----------------IKSFLKPDLIFVDGAQQQI 437 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 AQ LK+ N+ + + I K + + + V N+ F+ ++ + Sbjct: 438 KKAQQALKESNIY--VPLFGIVKNKNHKTH---YVLDQNLQKVENISQESFNFLFNMQIQ 492 Query: 537 AHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 FA HR + K S LD++N I + LL F T K I ++ E L Sbjct: 493 VDEFAKIKHRNKNIKILTSSFLDQLN-IDKKTQDKLLTYFKTYKKIKEATEEELK 546 >gi|301629963|ref|XP_002944101.1| PREDICTED: uvrABC system protein C-like [Xenopus (Silurana) tropicalis] Length = 267 Score = 227 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 85/272 (31%), Positives = 129/272 (47%), Gaps = 11/272 (4%) Query: 343 QALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKR---IEIYDNSHIMGCSAVGCM 399 A NA + L+ E S Q + + L IE +D SH G + Sbjct: 1 MAQQNADIQLARLLAEEGSQQARTRALAEVLDLSVENLDGLVIECFDISHTAGEATQASC 60 Query: 400 VVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS 459 VV + ++Y +F + DD A MR VL+RR+ + + + + + Sbjct: 61 VVFHHHKMQSSEYPRF--KIEGITGGDDYAAMRQVLQRRYRPVAEAQREAGGAEPQANKA 118 Query: 460 FPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA-L 518 PD+V++DGGKGQ++ A+ V +L ++ I + KG R G+E+ G + Sbjct: 119 --RLPDLVLIDGGKGQVAMARAVFSELGLDLS-RIAGVEKGEGRKLGLEELVFADGREKV 175 Query: 519 VLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--SPLDEINGIGPLRKRLLLQSFG 576 L L + ++RDEAHRFAIT R R K S L++I GIGP ++ LLQ FG Sbjct: 176 YLGRDSAALMLVAQVRDEAHRFAITGMRAARAKVRVGGSRLEDIPGIGPRKRARLLQRFG 235 Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNHFH 608 V+ + +S E LA++EGIS +A IY Sbjct: 236 GVRGVQDASVEDLATVEGISLALADTIYRALR 267 >gi|32474585|ref|NP_867579.1| excinuclease ABC subunit C [Rhodopirellula baltica SH 1] gi|32445124|emb|CAD75126.1| excinuclease ABC subunit C [Rhodopirellula baltica SH 1] Length = 474 Score = 227 bits (578), Expect = 5e-57, Method: Composition-based stats. Identities = 85/254 (33%), Positives = 128/254 (50%), Gaps = 6/254 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + P+ PGVY M D AG V+YVGKA NL+ R SY + + R I I +I F Sbjct: 48 KVKTFPQSPGVYLMKDSAGVVIYVGKAKNLRSRASSYFLKAASEDARTADWIGDIADIDF 107 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T +EV+ALL+E+ +IK ++PR N L+DDKSFPY++IT + + P + R+ + Sbjct: 108 VETESEVDALLMESRLIKDIQPRNNKELKDDKSFPYLMITTREEFPRVEVTREPPSKGVK 167 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-----TRPCLLFQIKRCSGPCTGEI 175 +GPF S A+ I +QR F R+C+ + RPCLL I +C+ PC I Sbjct: 168 LYGPFTSAGALRGAIQVMQRIFKFRTCSLDISESDERWQWFRPCLLASINQCTAPCNFRI 227 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 S E Y + + FL GG L ++ M A+ D+E A + RD + + ++ Sbjct: 228 SKEDYRRDIKRLQTFLDGGKTKLLREMRGEMKAASKALDFERAAVLRDEINMIERLEERG 287 Query: 236 DSIYNRMDCFSLYH 249 + + Sbjct: 288 ELDTHAQPEVFYID 301 Score = 124 bits (311), Expect = 5e-26, Method: Composition-based stats. Identities = 63/198 (31%), Positives = 91/198 (45%), Gaps = 25/198 (12%) Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 Q L K L P+ IE D +H+ G V +V + K YR+F + Sbjct: 301 DPQKGLAGLKKVLGLSETPRVIEGVDIAHLGGNETVASLVQFIDGLPFKPGYRRFRI--Q 358 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 +VK DD + V+ RRF L +E S+PDV+++DGGKGQL+AA Sbjct: 359 EVKGIDDFRSIYEVVSRRFRGLSDRQE--------------SFPDVLLIDGGKGQLNAAM 404 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 + +++ T+IS+AK + E F E L L+ L +Q +RDE+HRF Sbjct: 405 AAFRDQDIQ-PPTVISLAKRDE-----EIFRPGISEPLKLSKNAFALRLLQYVRDESHRF 458 Query: 541 AITTHRKRRKKAAYSPLD 558 A H R K S L+ Sbjct: 459 AQHYHHILRSK---SSLE 473 >gi|157827480|ref|YP_001496544.1| excinuclease ABC subunit C [Rickettsia bellii OSU 85-389] gi|157802784|gb|ABV79507.1| Excinuclease ABC subunit C [Rickettsia bellii OSU 85-389] Length = 356 Score = 227 bits (578), Expect = 5e-57, Method: Composition-based stats. Identities = 114/337 (33%), Positives = 173/337 (51%), Gaps = 3/337 (0%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PG+Y M + ++Y+GKA NL+KR+ +Y NN RI M+ Q+ + + VT + Sbjct: 13 VPTLPGIYLMYNSDKEIIYIGKAKNLKKRL-NYYSKNNLRGRIARMVHQVYLVEYKVTIS 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EA LLE +IK+ +PRFNILLR DKS YI + H P L K ++ FGPF Sbjct: 72 ESEAFLLETQLIKQHQPRFNILLRRDKSASYIKLRSDHDFPTLVKCYLDNSTGNKLFGPF 131 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 S ++ I LQ+ F LR+C+DS F R RPCL ++I +C PCTG IS E Y E + Sbjct: 132 TSGHQIDLIITELQKIFKLRTCSDSDFAFRKRPCLEYEIGKCFAPCTGNISKEDYAELIE 191 Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCF 245 + FLS L K+A M + +E A + RDR+ + + Y + Sbjct: 192 QINDFLSSNIEKLLGKLALKMQALSDHSHFEKAALIRDRINLIKLSKLRIGKQYEGIIDA 251 Query: 246 SLYHNKNLACIQTCF--FHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303 + ++ + Q + GQ G + + +T A++L F+ QFY + + I Sbjct: 252 DVIVIRDDSRFQIKVLLYRGGQKWGEQNYSPIYNQTNTKAEVLESFIGQFYQTRKPAKEI 311 Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKI 340 +++ + + + S K Y K K VPK+G K +I Sbjct: 312 IINVPIQNSEPIISSLKKLYNIKTKFIVPKRGSKAQI 348 >gi|154505836|ref|ZP_02042574.1| hypothetical protein RUMGNA_03377 [Ruminococcus gnavus ATCC 29149] gi|153793854|gb|EDN76274.1| hypothetical protein RUMGNA_03377 [Ruminococcus gnavus ATCC 29149] Length = 261 Score = 226 bits (576), Expect = 8e-57, Method: Composition-based stats. Identities = 83/255 (32%), Positives = 130/255 (50%), Gaps = 14/255 (5%) Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 E +++ K + I R+E YD S+ G +VG MVV +N YRKF Sbjct: 20 KREEGRTIGAVREIEKLIGISDIR-RMEAYDISNTNGFESVGSMVVYERGKPKRNDYRKF 78 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 + ++ DD MR VL RRF+ +K ++ K+ F S+PD++++DGGKGQ Sbjct: 79 KIKG--IEGADDYGSMREVLTRRFTHGLKEQKE-----SKEIGGFSSFPDLILMDGGKGQ 131 Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 ++ A VL L + I + + K + + + ++ I R++D Sbjct: 132 VNVALQVLGDLRL--NIPVCGMVKDDYHRTRG---LYYENQEIAIDKNSEAFRLITRIQD 186 Query: 536 EAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFAI HR R K +S LD+I GIGP R++ L+++F ++ I +S E LA I Sbjct: 187 EAHRFAIEYHRSLRSKGQVHSILDDIEGIGPARRKALMRNFMSLDAIKAASVEELAQIPS 246 Query: 595 ISKKIACKIYNHFHK 609 +++K A +Y FHK Sbjct: 247 MNEKAAESVYKFFHK 261 >gi|327541275|gb|EGF27818.1| excinuclease ABC subunit C [Rhodopirellula baltica WH47] Length = 474 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 85/254 (33%), Positives = 128/254 (50%), Gaps = 6/254 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + P+ PGVY M D AG V+YVGKA NL+ R SY + + R I I +I F Sbjct: 48 KVKTFPQSPGVYLMKDSAGVVIYVGKAKNLRSRASSYFLKAASEDARTADWIGDIADIDF 107 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T +EV+ALL+E+ +IK ++PR N L+DDKSFPY++IT + + P + R+ + Sbjct: 108 VETESEVDALLMESRLIKDIQPRNNKELKDDKSFPYLMITTREEFPRVEVTREPPSKGVK 167 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-----TRPCLLFQIKRCSGPCTGEI 175 +GPF S A+ I +QR F R+C+ + RPCLL I +C+ PC I Sbjct: 168 LYGPFTSAGALRGAIQVMQRIFKFRTCSLDISESDERWQWFRPCLLASINQCTAPCNFRI 227 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 S E Y + + FL GG L ++ M A+ D+E A + RD + + ++ Sbjct: 228 SKEDYRRDIKRLQTFLDGGKTKLLREMRGEMKAASKALDFERAAVLRDEINMIERLEERG 287 Query: 236 DSIYNRMDCFSLYH 249 + + Sbjct: 288 ELDTHAQPEVFYID 301 Score = 123 bits (309), Expect = 8e-26, Method: Composition-based stats. Identities = 63/198 (31%), Positives = 91/198 (45%), Gaps = 25/198 (12%) Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 Q L K L P+ IE D +H+ G V +V + K YR+F + Sbjct: 301 DPQKGLAGLKKVLGLSETPRVIEGVDIAHLGGNETVASLVQFIDGLPFKPGYRRFRI--Q 358 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 +VK DD + V+ RRF L +E S+PDV+++DGGKGQL+AA Sbjct: 359 EVKGIDDFRSIYEVVSRRFRGLSDRQE--------------SFPDVLLIDGGKGQLNAAM 404 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 + +++ T+IS+AK + E F E L L+ L +Q +RDE+HRF Sbjct: 405 AAFRDQDIQ-PPTVISLAKRDE-----EIFRPGISEPLKLSKNAFALRLLQYVRDESHRF 458 Query: 541 AITTHRKRRKKAAYSPLD 558 A H R K S L+ Sbjct: 459 AQHYHHILRSK---SSLE 473 >gi|149173854|ref|ZP_01852483.1| excinuclease ABC subunit C [Planctomyces maris DSM 8797] gi|148847384|gb|EDL61718.1| excinuclease ABC subunit C [Planctomyces maris DSM 8797] Length = 458 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 87/254 (34%), Positives = 128/254 (50%), Gaps = 6/254 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 Q P PGVY M D RV+YVGKA NL+ R SY + R ++++I +I + Sbjct: 32 KVRQFPTTPGVYLMKDAQARVIYVGKAVNLKSRASSYFNQAAAVERRTAELVTEIADIDY 91 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TEV+ALLLEA +IK ++PRFN L+DDK+FPY+ IT + P + R + Sbjct: 92 LETETEVDALLLEARLIKDIRPRFNSELKDDKTFPYLEITTREDFPRVEFTRTPKSKGTK 151 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-----TRPCLLFQIKRCSGPCTGEI 175 +GPF + + TI LQ+ F R+C+ + RPCLL I +C+ PC I Sbjct: 152 LYGPFTNAKQLRGTITVLQKIFRFRNCSLDIEEGDEKWRWFRPCLLHSINQCTAPCNLRI 211 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 S E Y + +++ K FL G L ++ + M A+ + YE A RD + L I+ Sbjct: 212 SKEDYRKDINKLKLFLDGKKDRLLNEMRKEMLAASEAKLYEKAARLRDEIQLLESIKLRG 271 Query: 236 DSIYNRMDCFSLYH 249 + + Sbjct: 272 NLEDHAQPEVFYID 285 Score = 127 bits (318), Expect = 7e-27, Method: Composition-based stats. Identities = 67/241 (27%), Positives = 109/241 (45%), Gaps = 22/241 (9%) Query: 312 TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTK 371 + + + + E + + L H Q I + ++ K Sbjct: 236 NEMRKEMLAASEAKLYEKAARLRDEIQLLESIKLRGNLEDHAQPEVFYIDPKKGMQGLKK 295 Query: 372 KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMM 431 F LP +P+RIE D +H+ G V +V + K+ Y++F + VK DD A + Sbjct: 296 VFGLPELPRRIEGVDIAHLQGGETVASLVQFIDGLPFKHGYKRFKIRT--VKGIDDFASI 353 Query: 432 RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENR 491 R V+ RR +L + E ++PD++++DGGKGQL+AA +++L VE Sbjct: 354 REVVSRRIRRLHQEGE--------------TFPDILLIDGGKGQLNAAMTAMRELGVEPP 399 Query: 492 ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK 551 T IS+AK + E + + E L+ L +Q +RDE+HRFA H RKK Sbjct: 400 FT-ISLAKREE-----EVYVPGETEPRRLSRHSYGLRLLQYVRDESHRFAQHYHHLLRKK 453 Query: 552 A 552 + Sbjct: 454 S 454 >gi|195927400|pdb|3C65|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvrc 5' Endonuclease Domain Length = 226 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 78/235 (33%), Positives = 124/235 (52%), Gaps = 22/235 (9%) Query: 377 HIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLE 436 P+RIE +DNS+I G V +VV + K +YRK+ + V +D R V+ Sbjct: 12 PAPRRIEAFDNSNIYGADPVSALVVFLDGKPAKKEYRKYKVKT--VAGPNDYETXREVVR 69 Query: 437 RRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK-KLNVENRITII 495 RR+++++K PD++I+DGGKG LSA + VL+ +L ++ + + Sbjct: 70 RRYTRVLKEG--------------LPLPDLIIIDGGKGHLSAVRDVLENELGLD--VPLA 113 Query: 496 SIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-Y 554 +AK K E + + L+ + Y +QR++DE HRFA+ HRK R+K + Sbjct: 114 GLAKDEKHRTS-ELLAGDPPDVVPLDRQSQEFYLLQRIQDEVHRFAVXFHRKTRQKTMFH 172 Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 S LD+I G+G RK+ LL FG+VK + ++ E L I + +A KIY H+ Sbjct: 173 SVLDDIPGVGEKRKKALLNYFGSVKKMKEATVEELQRA-NIPRAVAEKIYEKLHE 226 >gi|283770206|ref|ZP_06343098.1| GIY-YIG catalytic domain-containing protein [Staphylococcus aureus subsp. aureus H19] gi|283460353|gb|EFC07443.1| GIY-YIG catalytic domain-containing protein [Staphylococcus aureus subsp. aureus H19] Length = 197 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 70/184 (38%), Positives = 102/184 (55%), Gaps = 6/184 (3%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PG Y M D +V+YVGKA L+ R++SY H + T ++ +I + F VT +E E Sbjct: 2 EPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVGEIRHFEFIVTSSETE 60 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128 +LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L R G YFGP+ + Sbjct: 61 SLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLLVTRTVKQGTGKYFGPYPNA 119 Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188 + ++T L R + R + + CL + I +C GPC ++ KY + E Sbjct: 120 YSAQETKKLLDRIYPYRK----CDKMPDKLCLYYHIGQCLGPCVYDVDLSKYAQMTKEIT 175 Query: 189 KFLS 192 FL Sbjct: 176 DFLE 179 >gi|260655865|ref|ZP_05861334.1| excinuclease ABC, C subunit [Jonquetella anthropi E3_33 E1] gi|260629481|gb|EEX47675.1| excinuclease ABC, C subunit [Jonquetella anthropi E3_33 E1] Length = 496 Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats. Identities = 74/254 (29%), Positives = 134/254 (52%), Gaps = 4/254 (1%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFT 61 +++P PGVY M D G+++YVGKA NL++R+ SY + + R+ +++ + +I Sbjct: 8 LKKLPNRPGVYLMHDERGKIIYVGKAKNLKRRVSSYFNHKDFAIPRLRKLVATVCDITTI 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T ++ EA ++E+ +IK +P FN+ L+ +P+ ++T P L R I+G Y Sbjct: 68 RTASDAEAYIVESRLIKAYQPFFNVELKMGTRYPWAVVT-DEPFPRLVVTRR-RDIKGRY 125 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEKY 180 FGPF S A++ ++ +++ F LRSC + R + +RPCL + I +C PC G ++ +Y Sbjct: 126 FGPFISAGALKDVLHIIEKAFPLRSCKYDLTRTKLSRPCLDYGIGKCDAPCVGLCTAREY 185 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E V + LSG +L ++ M + + ++E+A + RD + +L + + Sbjct: 186 GERVDDVILLLSGQTADLIARLRARMEECASRLEFEAAGVARDAIRSLWRMTRSQVTGTL 245 Query: 241 RMDCFSLYHNKNLA 254 D A Sbjct: 246 SDDLDEDSWTAMKA 259 Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats. Identities = 70/251 (27%), Positives = 116/251 (46%), Gaps = 26/251 (10%) Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + +K + LP +P RI+ +D SH G G VV + + YR+F + Sbjct: 250 DEDSWTAMKALQELVGLPTVPWRIDGFDISHHAGYETYGVSVVFEQGYPNPSLYRRFKIR 309 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V DD + + R++ ++ E P + ++DGG QL+ Sbjct: 310 T--VDWIDDFRSIEETVTRKYRMALRAE--------------APLPQLAMIDGGPQQLAF 353 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEA 537 A+ L +L + + +++A E + + L DP L +QR+RDEA Sbjct: 354 ARKALAELEL--NLPTVALA------EEEELIYTAPDAAPIRLPRNDPALRLLQRVRDEA 405 Query: 538 HRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HRFAIT+HR+ + + S L++I GIG LLL +FG+V+ ++ S E L+S++GI Sbjct: 406 HRFAITSHRRASTARFSRSALEDIPGIGKHTSALLLSAFGSVRRVAGLSEEELSSVKGIG 465 Query: 597 KKIACKIYNHF 607 A +I Sbjct: 466 PVTARRIKEAL 476 >gi|309805714|ref|ZP_07699754.1| putative excinuclease ABC subunit C [Lactobacillus iners LactinV 09V1-c] gi|308164967|gb|EFO67210.1| putative excinuclease ABC subunit C [Lactobacillus iners LactinV 09V1-c] Length = 237 Score = 224 bits (570), Expect = 4e-56, Method: Composition-based stats. Identities = 74/235 (31%), Positives = 129/235 (54%), Gaps = 6/235 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+CPG Y M D+ G+V+YVGK+ NL+ R++SY S R ++ IN+ Sbjct: 9 KLKLLPDCPGCYLMKDLNGKVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVRDINDFEII 67 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V ++ EA LLE +IK+ +P +N+ L++ +P+I IT+ + P + +G Y Sbjct: 68 VVSSDKEAFLLEITLIKKYQPYYNVQLKNGGGYPFIEITN-ERDPEVKLTSIIKKDKGYY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ +V A + T+ +Q+ + LR C+ + RPCL + + +C G C E+SS+KY Sbjct: 127 FGPYPNVYAAQATLKFIQKMWPLRRCSGKL----GRPCLYYNMGQCLGSCFKEVSSDKYD 182 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + + K FL+G K ++ + M A+ ++E A +RD+L+ + Sbjct: 183 HQIKQIKCFLNGDITKAKTELIKKMQIASDNLEFERAGEYRDQLSYIEQTVEKQK 237 >gi|269836971|ref|YP_003319199.1| DNA polymerase III, epsilon subunit [Sphaerobacter thermophilus DSM 20745] gi|269786234|gb|ACZ38377.1| DNA polymerase III, epsilon subunit [Sphaerobacter thermophilus DSM 20745] Length = 658 Score = 224 bits (570), Expect = 4e-56, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 119/225 (52%), Gaps = 3/225 (1%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY M RV+YVGKA +L+ R+ SY +T ++ ++ I I T Sbjct: 294 IPHAPGVYLMYGARERVIYVGKAKDLRNRVSSYYSQPLGYTRKMDGLLESIERIEVVETG 353 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +E+EALLLEA I+R +P++N +R+++++PYI I + P + R + YFGP Sbjct: 354 SELEALLLEAQFIRRYRPQYNTQMRNNEAYPYIKIDIGNPWPRVTLTRQRADDGAVYFGP 413 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVF--RHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 F + +T++ + F LR+CA S R PCL + +C GPCTG + + Y + Sbjct: 414 FRVARSARETVDLINEVFPLRTCARSFRTARSYGSPCLRLSLGQCLGPCTGMVDRDAYRQ 473 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAA 227 V + FL GG + ++ + + + D+E A RDR+ Sbjct: 474 AVQDVIGFLRGGRDEVMARLHQELVACAERLDFERASRLRDRIRR 518 >gi|281356792|ref|ZP_06243283.1| excinuclease ABC, C subunit [Victivallis vadensis ATCC BAA-548] gi|281316919|gb|EFB00942.1| excinuclease ABC, C subunit [Victivallis vadensis ATCC BAA-548] Length = 505 Score = 223 bits (569), Expect = 5e-56, Method: Composition-based stats. Identities = 88/297 (29%), Positives = 143/297 (48%), Gaps = 24/297 (8%) Query: 313 SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKK 372 ++ E + + + + +L ++ + Sbjct: 230 AIREKMTAAAMEQRFEKAAHLRDVLTNLEAVFGKRNRIFERPELPGTAPGMAAVRALGEA 289 Query: 373 FALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMR 432 L +P RI +D S+I+G AV +V E ++ YR+F + V DD AMM Sbjct: 290 LGLEKLPSRIIGFDISNILGKLAVASLVAFKEGRPDRDNYRRFKIRT--VHQSDDFAMMH 347 Query: 433 MVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRI 492 VL R F +L++ + L PD+V++DGGKGQLS+A L ++ + Sbjct: 348 EVLVRHFGRLLEEKRPL--------------PDLVMVDGGKGQLSSAIDALVEIGCP-PL 392 Query: 493 TIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA 552 +I +AK + E + + E +VL+ +P L +Q LRDEAHRFAIT HR+ R K Sbjct: 393 PVIGLAKRNE-----EIYLPGRSEPVVLDRHNPALRMLQALRDEAHRFAITYHRELRNKR 447 Query: 553 A-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA-SIEGISKKIACKIYNHF 607 S LDEI GIG RK+ LL++FG+++ + +++P+ +A + GI + +A KI Sbjct: 448 IEQSRLDEIQGIGDTRKKQLLRAFGSLRALKKATPDEIAEKVPGIGEALAEKILAAL 504 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 83/238 (34%), Positives = 122/238 (51%), Gaps = 4/238 (1%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN---HTHRITHMISQINNIR 59 ++P PGVY D G+V+YVGKA NL++R+ SY + ++ +I+ I++ Sbjct: 28 PSEIPAKPGVYVYRDRFGKVIYVGKAANLRRRMSSYFQPSRVVRADAKLRSLINSISDWS 87 Query: 60 FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG 119 + V TE EAL+LE+ +IK P +N+L+RDDK + + I K P L R Sbjct: 88 YEVVRTEDEALILESRLIKDFAPHYNVLMRDDKRYLLLKIDWHEKFPTLKLARLKKNDGA 147 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP-CLLFQIKRCSGPCTGEISSE 178 YFGPF A++ T+ L F LR+C DS TR CL +K C PCTG ++ E Sbjct: 148 QYFGPFPKGGALKMTLEFLLAHFGLRACRDSEPDEETRKRCLKRIVKDCCAPCTGAVTPE 207 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 +Y E V +A L+G L I M A +++ +E A RD L L + + Sbjct: 208 EYRERVEQAVAVLNGDIAELTAAIREKMTAAAMEQRFEKAAHLRDVLTNLEAVFGKRN 265 >gi|87310709|ref|ZP_01092836.1| excinuclease ABC subunit C [Blastopirellula marina DSM 3645] gi|87286466|gb|EAQ78373.1| excinuclease ABC subunit C [Blastopirellula marina DSM 3645] Length = 458 Score = 223 bits (568), Expect = 8e-56, Method: Composition-based stats. Identities = 83/254 (32%), Positives = 131/254 (51%), Gaps = 6/254 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRF 60 + P PGVY M DI GRV+YVGKA NL+ R SY ++ R + + +I + F Sbjct: 32 KVRKFPTTPGVYLMKDIQGRVIYVGKAKNLRSRASSYFNAEAAVDVRTGYWVKEIADADF 91 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T +EV+ALL+EA ++K ++P+FN L+DDKSFPY++I+ + P + R+ Sbjct: 92 VETDSEVDALLMEARLVKDIQPKFNKDLKDDKSFPYLMISQREDFPRVEFTREPQEKNAK 151 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-----TRPCLLFQIKRCSGPCTGEI 175 +GPFA+ A+ I LQR F R+C+ + + RPCLL I +C+ PC I Sbjct: 152 LYGPFANAGALRGAIQVLQRIFKFRTCSLDIDENDERWRWFRPCLLASIDQCTAPCNLRI 211 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 S E+Y + + + FL G L +++ M +A+ + +E A RD + L + Sbjct: 212 SKEEYRKDIRRLQMFLEGNRDRLLKQLREEMLEASKELQFEKAAKLRDEIDMLERLDERG 271 Query: 236 DSIYNRMDCFSLYH 249 + + Sbjct: 272 ELETHAQPEVFYID 285 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 102/243 (41%), Gaps = 22/243 (9%) Query: 312 TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTK 371 L E + + + E + +H Q I + L K Sbjct: 236 KQLREEMLEASKELQFEKAAKLRDEIDMLERLDERGELETHAQPEVFYIDPKKGLAGLRK 295 Query: 372 KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMM 431 LP P+ IE D +H+ G V +V + K YR++ + VK DD + Sbjct: 296 VLQLPTTPRSIEGVDIAHLQGGETVASLVQFLDGLPFKPGYRRYKIQG--VKGIDDFRSI 353 Query: 432 RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENR 491 V+ RRF +L + E +PDV+++DGGKGQL+AA + L +E Sbjct: 354 HEVVARRFKKLHADGE--------------VFPDVLLIDGGKGQLNAALAAFRDLQIE-P 398 Query: 492 ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK 551 T+IS+AK + E F + E L L+ L +Q +RDEAHRFA H RKK Sbjct: 399 PTLISLAKREE-----EIFRPGQSEPLRLSRHAYALRLLQYVRDEAHRFAQHYHHILRKK 453 Query: 552 AAY 554 + Sbjct: 454 NTF 456 >gi|283777905|ref|YP_003368660.1| excinuclease ABC C subunit domain-containing protein [Pirellula staleyi DSM 6068] gi|283436358|gb|ADB14800.1| excinuclease ABC C subunit domain protein [Pirellula staleyi DSM 6068] Length = 493 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 80/254 (31%), Positives = 124/254 (48%), Gaps = 6/254 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + P PG+Y M D AGRV+YVGKA NL+ R SY +R + +I +I + Sbjct: 67 KVREFPRTPGIYLMKDDAGRVIYVGKAKNLRSRAGSYFLRGAKEEYRTAIWVDEICDIDY 126 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +EV+ALL+EA +IK ++P+ N L+DDK+FPY++I+ + P + R + Sbjct: 127 VECESEVDALLMEARLIKDIQPKHNKELKDDKTFPYLMISTREDFPRVEVTRQPADRGVK 186 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT-----RPCLLFQIKRCSGPCTGEI 175 FGPFAS ++ + LQR F R+C+ + RPCLL I++C+ PC I Sbjct: 187 LFGPFASAGSLRGAVQVLQRIFKFRTCSLDIEDGDDRWRWFRPCLLASIQQCTAPCNLRI 246 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 S ++Y + FL GG L +++ M A+ +E A RD + L + Sbjct: 247 SKDEYRRDIDRLITFLEGGKTRLLKQLTLEMQAASKALQFEVAARLRDEIKMLETLDRRG 306 Query: 236 DSIYNRMDCFSLYH 249 + Sbjct: 307 SIDVHAQPEVFYID 320 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 62/226 (27%), Positives = 97/226 (42%), Gaps = 25/226 (11%) Query: 334 QGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGC 393 + E + + + H Q I L K L P+ IE D +H+ G Sbjct: 293 RDEIKMLETLDRRGSIDVHAQPEVFYIDPTKGLAGLKKVLGLAEQPRTIEGMDIAHLGGG 352 Query: 394 SAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP 453 V +V + K YR++ + V DD M V+ RR+ + + E Sbjct: 353 ETVASVVQFLDGLPFKAGYRRYRIVG--VDGIDDFRSMHEVVSRRYRKRVDEGE------ 404 Query: 454 KKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK 513 +PD++++DGGKGQL+AA + ++ T+IS+AK + E F Sbjct: 405 --------PFPDILLIDGGKGQLNAAMAAFRDQDI-KPPTVISLAKQEE-----EIFLPG 450 Query: 514 KGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDE 559 + E++ L+ L +Q +RDEAHRFA H R+K S LD Sbjct: 451 ERESIKLSRHAFALRLLQYVRDEAHRFAQHYHHILRRK---SQLDG 493 >gi|223936896|ref|ZP_03628805.1| excinuclease ABC C subunit domain protein [bacterium Ellin514] gi|223894465|gb|EEF60917.1| excinuclease ABC C subunit domain protein [bacterium Ellin514] Length = 559 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 80/237 (33%), Positives = 119/237 (50%), Gaps = 4/237 (1%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH---THRITHMISQINNI 58 ++P PG+Y M D G V+YVGKA +L+KR+ Y H + + + I ++ Sbjct: 10 KLNELPHKPGIYLMKDRFGTVIYVGKARDLRKRVSQYFHPSRKMGWDLKFKALTEAIYDL 69 Query: 59 RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118 V +E EALLLE +IK PR+NI +DDK F + + IP R Sbjct: 70 DVHVVRSEPEALLLEGKLIKEFHPRYNISFKDDKRFLMLKVNLNDPIPRFTLTRFKQDDG 129 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISS 177 YFGPFA A++ T+ ++R F LR C R + CL +K C+ PC G ++ Sbjct: 130 ARYFGPFAHSSALKNTLTMIRRQFHLRGCRPLTPNERDYKHCLYGNLKHCTAPCIGNVTR 189 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234 E+Y+ V A FLSG ++E++A M +A +DYE A + RD ++ L Sbjct: 190 EQYLAQVQAACDFLSGQGEEMQEQLAEEMKKAAAAQDYERAAMLRDAISDLRQTTKK 246 Score = 200 bits (509), Expect = 4e-49, Method: Composition-based stats. Identities = 86/288 (29%), Positives = 133/288 (46%), Gaps = 31/288 (10%) Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 L I Q L + + L P RIE +D S+I G AV +V + Sbjct: 251 ERLPYNLPLAIEPQRDLAELGQVLDLAGPPMRIEGFDISNISGTFAVSSLVSFKNGRPDR 310 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPS------- 462 + YRKF + V Q+D A M + RR+S+L++ + + + Sbjct: 311 SNYRKFKMKS--VVGQNDFACMAETIRRRYSRLLREGKEARKAMEAASANAVPQPSENAS 368 Query: 463 --------------WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGME 508 PD++++DGGKGQL+AA L+KL + +I II +AK + E Sbjct: 369 EVQPALPGSPLPSNLPDLILIDGGKGQLNAACEELEKLGLS-QIPIIGLAKEFE-----E 422 Query: 509 KFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLR 567 + + E L L+ L +QR+RDE+HR A T + + R KK + S LDE IG R Sbjct: 423 IYRPGQSEPLRLSHASGALKLLQRVRDESHRLANTYNAELRLKKISESILDEFPNIGQRR 482 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615 K LL+ FG+V+ + ++ E +A + G K+A + + S TP Sbjct: 483 KADLLKKFGSVQRLRIATVEQIAEVPGFGGKMAADLKAFL-EARSSTP 529 >gi|111657554|ref|ZP_01408294.1| hypothetical protein SpneT_02001255 [Streptococcus pneumoniae TIGR4] gi|148988984|ref|ZP_01820384.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP6-BS73] gi|147925481|gb|EDK76558.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP6-BS73] Length = 243 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 75/241 (31%), Positives = 124/241 (51%), Gaps = 22/241 (9%) Query: 377 HIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLE 436 P RIE +DNS+IMG S V MVV K YRK+ + V DD A MR V+ Sbjct: 5 PTPVRIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRKYKIKT--VVGPDDYASMREVIR 62 Query: 437 RRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG-VLKKLNVENRITII 495 RR+ ++ + + PD++++DGG+GQ++ A+ + ++L ++ I I Sbjct: 63 RRYGRVQREA--------------LTPPDLIVIDGGQGQVNIAKQVIQEELGLD--IPIA 106 Query: 496 SIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYS 555 + K K E F E + L+ + +QR++DE HRFAIT HR+ R K ++S Sbjct: 107 GLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQDEVHRFAITFHRQLRSKNSFS 165 Query: 556 P-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 LD I+G+GP RK+ L++ F ++ I +S + + + G+ + +A + + Sbjct: 166 SQLDGIDGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV-GVPRVVAEAVQRKLNPQGEAL 224 Query: 615 P 615 P Sbjct: 225 P 225 >gi|189218734|ref|YP_001939375.1| excinuclease ABC subunit C [Methylacidiphilum infernorum V4] gi|189185592|gb|ACD82777.1| Excinuclease ABC subunit C [Methylacidiphilum infernorum V4] Length = 486 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 116/226 (51%), Gaps = 4/226 (1%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH---THRITHMISQINNI 58 +P PGVY D RV+YVGKA +L KR+ Y H + ++ ++ ++ Sbjct: 8 KIRDLPHKPGVYLFKDRFNRVIYVGKAVDLHKRVSQYFHPSRRLRADRKLNALVEAAVDL 67 Query: 59 RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118 + V +E EA+LLE +IK +PR+N+ RDDK F + + P R Sbjct: 68 EYYVVHSEAEAVLLEGRLIKEFRPRYNVSFRDDKRFLLVKVDLSEPFPRFQVTRLKKQDN 127 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISS 177 YFGPFAS A+ T+N +++ F LRSC+ + + + CL IK CS PC +IS Sbjct: 128 ARYFGPFASSSALRTTLNLMKKKFGLRSCSALIPSEKDYKHCLDHIIKNCSAPCIAKISQ 187 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRD 223 +Y+E V A FL G + + ++I M +A +D+E A R+ Sbjct: 188 AEYLERVKMACAFLEGKSKEMIDEIRLKMEEAAQAQDFEKAAELRN 233 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 89/301 (29%), Positives = 148/301 (49%), Gaps = 25/301 (8%) Query: 310 EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH--RSHTQKLSTEISHQMILK 367 + +++ K K E R ++E R ++L S L+ Sbjct: 204 KSKEMIDEIRLKMEEAAQAQDFEKAAELRNLLEALEETTRPARRFVKQLPKVSSPLEDLE 263 Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427 + ALP +P IE +D S+I V MV E ++ YR++ + V QDD Sbjct: 264 ELQAVLALPQVPHLIECFDISNISSTHKVASMVTFREGKADRSSYRRYRIKT--VAGQDD 321 Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487 A M+ V+ RR+ +++ PD++++DGGKGQLS+A L L Sbjct: 322 FACMQEVIRRRYKRVLDEG--------------GRLPDLIVVDGGKGQLSSALKALHSLQ 367 Query: 488 VENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRK 547 + N + +I +AK + E + + LVL+ R L +QR+RDEAHR A + H+ Sbjct: 368 L-NDLCVIGLAKENE-----EIYREALPDPLVLDKRSKALRLLQRIRDEAHRVANSYHQL 421 Query: 548 R-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 +K+ S LD+ GI RK+LL+++FG+++ I +SS E +A+++GI KK+A +I + Sbjct: 422 LLKKRMRESILDDCPGISENRKKLLIRAFGSIEKIKKSSVEEIAAVKGIGKKLAEQILSF 481 Query: 607 F 607 Sbjct: 482 L 482 >gi|298244280|ref|ZP_06968086.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM 44963] gi|297551761|gb|EFH85626.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM 44963] Length = 684 Score = 220 bits (560), Expect = 7e-55, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 3/222 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVT 63 PE PGVY M D G+V+YVGKA L+ R+ SY +T ++ ++ + I V Sbjct: 325 NFPEKPGVYLMRDEHGQVIYVGKAKCLKDRLGSYYSQPLGYTRKMDGLLQNVREIETRVL 384 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E+EALL+E+ +IK L+P +N+ LR+ + +P+I I +H P +Y R+ + YFG Sbjct: 385 GSELEALLVESRLIKELQPMYNVQLRNYELYPFIKIDVQHAFPRVYATREIAADGARYFG 444 Query: 124 PFASVDAVEKTINSLQRTFFLRSCAD--SVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 PF S V+ TI +Q+ F +R+C + PCL + RC PC G + ++Y Sbjct: 445 PFRSRRVVDATIELMQKIFPVRTCTRSLPPAAKASDPCLRHHLGRCPAPCRGGVDEDEYR 504 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRD 223 + + + FL G +L +++ R M +A + ++E A RD Sbjct: 505 KIIEQVCAFLGGEREDLFDRLRRQMFEAAQQLNFERAAWLRD 546 >gi|149198118|ref|ZP_01875165.1| excinuclease ABC subunit C [Lentisphaera araneosa HTCC2155] gi|149138720|gb|EDM27126.1| excinuclease ABC subunit C [Lentisphaera araneosa HTCC2155] Length = 486 Score = 219 bits (559), Expect = 8e-55, Method: Composition-based stats. Identities = 84/245 (34%), Positives = 125/245 (51%), Gaps = 24/245 (9%) Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427 D K+ L P IE +DNS+ G AV MV + YR F + V+ DD Sbjct: 264 DLKKRLELDITPSVIECFDNSNFQGTHAVASMVRFVDGKPDNKSYRHFKIKT--VEGPDD 321 Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487 A M+ ++ RR+S+L++ + L PD++++DGGKGQLS+A + +L Sbjct: 322 FASMKEIVYRRYSRLLREKRPL--------------PDLILIDGGKGQLSSALQSIDELG 367 Query: 488 VENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRK 547 ++ I +AK + F E +L L +Q LRDE+HRFAI HR+ Sbjct: 368 ID-HIPTYGLAKKHEL-----LFTRNDSEGKILPRTSAGLKMLQHLRDESHRFAINFHRQ 421 Query: 548 RRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS-IEGISKKIACKIYN 605 R+K S LD+I GIG RK LL FG+V+ I ++SP+ +A + G+ +K A I Sbjct: 422 LRRKQVANSLLDDIPGIGKKRKMTLLNHFGSVREIRKASPQDIAEAVPGLGEKSAHMILE 481 Query: 606 HFHKN 610 + KN Sbjct: 482 YLKKN 486 Score = 203 bits (517), Expect = 6e-50, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 113/242 (46%), Gaps = 4/242 (1%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH---THRITHMISQINNIR 59 ++ PGVY D +V+YVGKA +L+KR+ +Y ++ ++ +I+ I Sbjct: 9 PRKISSDPGVYVFRDRFAKVIYVGKAKSLRKRLATYFQASRLATADPKLRSLINSIAFYE 68 Query: 60 FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG 119 +E EALLLE+ IK P +NIL+RDDK+F + +T P + R Sbjct: 69 TYEVKSESEALLLESRFIKEYSPHYNILMRDDKNFYLVKVTINEPYPRILLTRVRKDDGA 128 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP-CLLFQIKRCSGPCTGEISSE 178 +YFGPF A+ T+ L R F LR+C + R C ++ CS PC ++ E Sbjct: 129 AYFGPFPCSSAIRSTVEFLTRYFKLRTCTSRIPDLSDRKHCKEQILRNCSAPCDQSVTQE 188 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y E V + K L G ++ +++ M K +E A +RD + L Sbjct: 189 QYRESVGDMIKVLEGQIADIVDELNEAMQNYVEKLQFEKAATYRDIITNLKSALKQRRKF 248 Query: 239 YN 240 N Sbjct: 249 VN 250 >gi|320103466|ref|YP_004179057.1| excinuclease ABC subunit C domain-containing protein [Isosphaera pallida ATCC 43644] gi|319750748|gb|ADV62508.1| excinuclease ABC C subunit domain protein [Isosphaera pallida ATCC 43644] Length = 550 Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats. Identities = 80/251 (31%), Positives = 116/251 (46%), Gaps = 6/251 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFTVT 63 P PGVY M D GRV+Y+GKA NL+ R+ SY RI I ++ + + Sbjct: 127 DFPTGPGVYLMKDARGRVVYIGKAKNLRSRVGSYFQKAAEGDPRIRDWIGEVAQVDYLEA 186 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 EV+A+L+EA +IK ++PR N L+DDKSFPY+ IT P + R + +G Sbjct: 187 KGEVDAMLMEARLIKDIQPRHNKELKDDKSFPYLQITTHEDFPRVNFTRSPAAKGVKLYG 246 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR-----TRPCLLFQIKRCSGPCTGEISSE 178 PF + I LQ+ F R+C+ + + RPCLL I++CS PC I Sbjct: 247 PFPRAGQLRGAIRLLQQVFQFRTCSLDIRENDPRWRWFRPCLLHAIRQCSAPCNLRIDKA 306 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y E + K L G + ++ M +A +E A RD L AL ++ D Sbjct: 307 SYREDIRRLKLVLDGKLDEVVAELQAEMKEAGRNLLFEKAARIRDTLKALQNLNLRGDLN 366 Query: 239 YNRMDCFSLYH 249 + Sbjct: 367 THAQPEVFHID 377 Score = 131 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 100/243 (41%), Gaps = 24/243 (9%) Query: 313 SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKK 372 L + + + + L +H Q I + L K Sbjct: 329 ELQAEMKEAGRNLLFEKAARIRDTLKALQNLNLRGDLNTHAQPEVFHIDPKRGLIGLRKV 388 Query: 373 FALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMR 432 L P+RI+ D +H+ G VG +V + K YR++ + VK DD A +R Sbjct: 389 LELDRTPRRIDGVDIAHLGGDQTVGSLVTFVDGLPFKPGYRRYRI--QSVKGIDDYASIR 446 Query: 433 MVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRI 492 V+ RR L + EE +PD+ ++DGGKGQL+AA + L+ E Sbjct: 447 EVVSRRILGLREREE--------------PFPDIFLIDGGKGQLNAALAAFRALD-EPPP 491 Query: 493 TIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK 551 T+IS+AK E + E L+L+ R L +Q +RDEAHRFA H R K Sbjct: 492 TLISLAKRE------EIIHRPGEAEPLILSRRSFALRLLQSVRDEAHRFAQHYHHLLRGK 545 Query: 552 AAY 554 Sbjct: 546 KLR 548 >gi|322411941|gb|EFY02849.1| excinuclease ABC subunit C [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 304 Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats. Identities = 96/317 (30%), Positives = 151/317 (47%), Gaps = 32/317 (10%) Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351 P+ + + E +E + I K PK+GEK++++ A NA + Sbjct: 9 QHFIPKEVFIPEAIDEELVAAIVPTKIIK-------PKRGEKKQLVALATKNARVSLQQK 61 Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 + + + RIE +DNS+I G S V MVV + K Sbjct: 62 FDLLEKDIKKTSGAIDNLGHLLGIDKPV-RIEAFDNSNIQGTSPVAAMVVFLDGKPNKKD 120 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471 YRKF + V QDD A MR V+ RR+S++ PD++I+DG Sbjct: 121 YRKFKIKT--VVGQDDYASMREVIFRRYSRVKHEG--------------LVAPDLIIIDG 164 Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531 G GQ++AA+ V++ + I I + K K E F K E + L + + Sbjct: 165 GLGQVNAAREVIED-RLGLTIPIAGLQKNDKHQT-HELLFGKPLEVVPLPRNSEEFFLLH 222 Query: 532 RLRDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 R++DE HRFAIT HR+ R K ++S LD+I G+GP RK++LL+ F T+ I+ +SP+ + Sbjct: 223 RIQDEVHRFAITFHRQVRSKNSFSSKLDKIPGLGPKRKQILLKHFKTMTAIAAASPDEIH 282 Query: 591 SIEGISKKIACKIYNHF 607 S+ GI + +A ++ H Sbjct: 283 SL-GIPRAVASAVHQHL 298 >gi|330752514|emb|CBL87462.1| UvrABC system protein C [uncultured Sphingobacteria bacterium] Length = 242 Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats. Identities = 92/267 (34%), Positives = 135/267 (50%), Gaps = 26/267 (9%) Query: 343 QALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVV 402 N + + L+ K L +PK IE +DNS+I G + V VV Sbjct: 1 MMKKNLMEHKFKSKTKVNQDH--LEQIQKDLRLTSLPKHIECFDNSNIQGSNPVASCVVF 58 Query: 403 GENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPS 462 K+ YR FN+ V DD A MR +++RR++ IK E L Sbjct: 59 INGRPAKSAYRHFNVKT--VDGPDDYASMREIVKRRYTGQIKKGEAL------------- 103 Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522 PD++++DGGKGQL+AA LK++ + + +I IAK + E F+ L+LN Sbjct: 104 -PDLIVIDGGKGQLNAAVEALKEVGIYQEVAVIGIAKQLE-----ELFYPNDPLPLMLNK 157 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMI 581 R P L IQ++R+EAHRFAIT HRK+R + + L+ I+GIG LL+SFG+V+ I Sbjct: 158 RSPALKLIQQIRNEAHRFAITFHRKKRSQHFTRTSLEVIDGIGEKTAIQLLRSFGSVEAI 217 Query: 582 SRSSPETLASIEGISKKIACKIYNHFH 608 ++ E +A + I +K A I H Sbjct: 218 RNATMEDIALV--IGQKKAQLIKAGLH 242 >gi|189485476|ref|YP_001956417.1| excinuclease ABC subunit C [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287435|dbj|BAG13956.1| excinuclease ABC subunit C [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 432 Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 73/252 (28%), Positives = 127/252 (50%), Gaps = 7/252 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PGVY M D G ++Y+GKA +L+ R+ SY +++ ++ + +I+ + I + Sbjct: 8 KLENIPKLPGVYIMRDGVGSIIYIGKAKSLKNRVSSYFNADINS-KAASIITAMRKIDYI 66 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 + +E EAL++E +I +++P FN + +DDKS+PYI + P L R Y Sbjct: 67 LCTSEREALIIERQLINKVQPYFNSMWKDDKSYPYIKFSIDEDFPRLALTRKKLKDGALY 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADS------VFRHRTRPCLLFQIKRCSGPCTGEI 175 FGP+ V ++K + L + F +R C + + CL + + C+GPC G+I Sbjct: 127 FGPYPQVFYIKKFVRWLVKLFKIRPCKMDLSEESLPEEKKVKSCLYYHTEMCTGPCLGKI 186 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 S+ Y + + + + FL+G L++ M + YE A RDRL AL ++ Sbjct: 187 MSKDYKKKIKDIELFLNGKFKKLEDDWKTQMFDLSENMRYEEAKEIRDRLYALQNMSERV 246 Query: 236 DSIYNRMDCFSL 247 D + Sbjct: 247 IISEITQDEINN 258 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 74/247 (29%), Positives = 115/247 (46%), Gaps = 28/247 (11%) Query: 310 EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI-----SHQM 364 + L + + + + + E R + + R +++ + Sbjct: 205 KFKKLEDDWKTQMFDLSENMRYEEAKEIRDRLYALQNMSERVIISEITQDEINNSVKRAN 264 Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424 + + L H P IE +DNS+I G +AV MV K YR+F + V Sbjct: 265 SINELKNVLRLKHQPAVIEGFDNSNIQGTNAVASMVRFQNGIADKKNYRRFKIKT--VAG 322 Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484 DD A M+ V+ RR+S LI+ E L PD++++DGGKGQL AA L+ Sbjct: 323 ADDFASMKEVVFRRYSSLIRKNEKL--------------PDLILIDGGKGQLGAAVSALE 368 Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544 +L +++I IIS+AK + E F K A++L+ L +Q +RDEAHRFA++ Sbjct: 369 EL--QSQIPIISLAKKNE-----EIFLPSKDSAMLLSRHSAALRLLQSVRDEAHRFAVSY 421 Query: 545 HRKRRKK 551 HRK R K Sbjct: 422 HRKLRAK 428 >gi|221632241|ref|YP_002521462.1| DNA polymerase III subunit epsilon [Thermomicrobium roseum DSM 5159] gi|221156344|gb|ACM05471.1| DNA polymerase III, epsilon subunit [Thermomicrobium roseum DSM 5159] Length = 693 Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats. Identities = 80/220 (36%), Positives = 118/220 (53%), Gaps = 3/220 (1%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVTCT 65 PE PGVY M D GRVLYVGKA NL++R++SY +T ++ ++ + I VT + Sbjct: 290 PELPGVYLMRDALGRVLYVGKARNLRQRVRSYFSQPLGYTRKMDGLLESVAEIETVVTGS 349 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E+EALLLE+ ++R KP +N LR+ +++PY+ + P L R Y GPF Sbjct: 350 ELEALLLESQFVQRYKPPYNTQLRNHEAYPYVKVELGRPWPRLMLARQRDDDDAVYVGPF 409 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVF--RHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 S A + L + LR+C S R RPCL + RC GPCTG ++ ++Y Sbjct: 410 RSTAAARSVVELLHQLLPLRTCHRSFRDARSYGRPCLQLTLGRCIGPCTGCVTPDEYRAL 469 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRD 223 V A ++LSG + E+ + + A + D+E A RD Sbjct: 470 VDCALRYLSGETSVVVERAQQLLADAVERLDFERAARLRD 509 >gi|171910789|ref|ZP_02926259.1| excinuclease ABC subunit C [Verrucomicrobium spinosum DSM 4136] Length = 530 Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats. Identities = 75/230 (32%), Positives = 110/230 (47%), Gaps = 4/230 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH---RITHMISQINNIRFT 61 +P PG+Y M D RV+YVGKA +L+KR+ SY + + +I I + Sbjct: 16 DVPHLPGIYVMRDRLNRVIYVGKARDLRKRLSSYFMPSRARKADLKTRALIDSIWDFETQ 75 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 + E EALLLE +IK +P++NI RDDK F + + P R Y Sbjct: 76 LVRNEPEALLLEGRLIKDFRPKYNISFRDDKRFLLVKVQMAEPFPRFTLTRLKKDDGARY 135 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCAD-SVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 FGPFA A+ T+N + R F LR C + + C IK+CS PC G ++ E+Y Sbjct: 136 FGPFAHSGALRTTLNWMNREFGLRVCRPLNPDEDDYKHCNNDIIKKCSAPCIGRVTQEEY 195 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH 230 + A +FL G + +L + M +A + D+E A RD + Sbjct: 196 RARIDRACEFLEGKSRDLVTALEEEMKKAAARLDFEKAAELRDMIEDFKK 245 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 73/283 (25%), Positives = 127/283 (44%), Gaps = 30/283 (10%) Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 R ++S+ I + + + L P +E +D ++I V MV Sbjct: 254 ERGARTRISSTIDPMRDVAELQEYLGLEEPPLVMECFDIANIGTAHCVASMVRFKNGAPD 313 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL------------------- 449 YR++ + V Q+D A M V+ RR+S+++ Sbjct: 314 NANYRRYRIRI--VSGQNDFAAMSEVVRRRYSRILLEGRAALGEDAADVSQENPLEAMRR 371 Query: 450 --NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507 PK F + P+++I+DGGKGQLS+A L++L + + II +AK + Sbjct: 372 LEEEKPKGVGPKFVTLPNLIIVDGGKGQLSSATKELQRLGLH-EVPIIGLAKENE----- 425 Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPL 566 E + + L++ L +QR+RDEAHR+A H+ + S LD+ G+ Sbjct: 426 EVYRPDVEQPLLIPHDRGALKLLQRIRDEAHRWANGYHQLLLGRRVEESILDDCPGVSQT 485 Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 RK LL+ FG+V + +++ E +A ++GI K +A +I + Sbjct: 486 RKANLLRHFGSVTRLRKATVEEIAKVQGIGKGLAEEIERFLRE 528 >gi|254707070|ref|ZP_05168898.1| excinuclease ABC subunit C [Brucella pinnipedialis M163/99/10] Length = 156 Score = 217 bits (552), Expect = 5e-54, Method: Composition-based stats. Identities = 82/154 (53%), Positives = 110/154 (71%), Gaps = 1/154 (0%) Query: 456 QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG 515 +FP+WPDV+++DGG+GQ+ A + +L ++ + + +T I IAKG R AG E+FF++ Sbjct: 1 NPDAFPAWPDVILIDGGQGQVGAVRQILGEMGISDLVTAIGIAKGVDREAGRERFFMEGK 60 Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQS 574 + L RDP+LYFIQRLRDEAHRFAI THR RRKK +PLDEI GIGP RKR LL Sbjct: 61 QPFTLPPRDPVLYFIQRLRDEAHRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHH 120 Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 FGT K +SR++ E L I+GIS+ +A I++HF Sbjct: 121 FGTAKAVSRAAVEDLMQIDGISEAMARAIHDHFR 154 >gi|94270461|ref|ZP_01291750.1| Helix-hairpin-helix motif [delta proteobacterium MLMS-1] gi|93450790|gb|EAT01838.1| Helix-hairpin-helix motif [delta proteobacterium MLMS-1] Length = 303 Score = 216 bits (550), Expect = 1e-53, Method: Composition-based stats. Identities = 83/279 (29%), Positives = 132/279 (47%), Gaps = 20/279 (7%) Query: 332 PKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIM 391 P++G+K+ ++ A NA + + E + + + L P R+E D S++ Sbjct: 41 PRRGDKKALVGMAHDNAAQVLAEHGRQEQQWEQLATAIQQAMQLVQPPTRLECLDISNLG 100 Query: 392 GCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNF 451 G AVG ++ +YR+F + D DD AMMR VL R S+ + + + Sbjct: 101 GQQAVGSLISFNSGVKEPGRYRRFKIRTRDTP--DDYAMMREVLWRHLSRGWQQQSLPDL 158 Query: 452 HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE-NRITIISIAKGPKRSAGMEKF 510 GQL AQ V+ +L + ++ + +IAK + G F Sbjct: 159 LLLDGGK---------------GQLGVAQAVVAELGLAADKPALAAIAKERE-GEGERIF 202 Query: 511 FVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKR 569 + L L P+L F+ RLRDEAHRF IT HRK R + S LD I G+GP RK Sbjct: 203 LPGRKNPLKLAPNSPVLLFMMRLRDEAHRFGITHHRKLRSQQQLASGLDRIPGVGPARKA 262 Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 LL++ G+++ + +S LA++ GI ++A I++H Sbjct: 263 ALLKTLGSLEAVRGASRAELAAVSGIGPELAAVIHDHLR 301 >gi|148927598|ref|ZP_01811067.1| excinuclease ABC, C subunit domain protein [candidate division TM7 genomosp. GTL1] gi|147887056|gb|EDK72555.1| excinuclease ABC, C subunit domain protein [candidate division TM7 genomosp. GTL1] Length = 440 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 117/234 (50%), Gaps = 5/234 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRF 60 + +P PGVY D G+++YVGKA L+ R++ Y N H + ++++I + + Sbjct: 11 KLKTLPRSPGVYFHKDARGKIIYVGKAAILKNRVRQYFQKNRPHDIKTEALVAEIADTDW 70 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE++AL LE+ MIKR KPR+N+LL DDKS ++ I + P + R Sbjct: 71 TTVETEIDALFLESEMIKRYKPRYNVLLCDDKSQLFVRINMQDVYPYVSFTRWPQDDSAE 130 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 Y+GP+ + AV+K + L+R F + R CL + + C G +ISS Y Sbjct: 131 YYGPYYNGWAVKKALRYLRRAFPYSTHETMP----KRVCLQYHLGLCPGVEEQKISSADY 186 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234 + + ++L G L I + M A ++DYE A R++L L + Sbjct: 187 KVTLRKLIRYLKGERKALVRDIEQEMKTAAARKDYELAAKKRNQLRDLKELGRQ 240 Score = 70.5 bits (171), Expect = 9e-10, Method: Composition-based stats. Identities = 57/214 (26%), Positives = 87/214 (40%), Gaps = 29/214 (13%) Query: 313 SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKK 372 + + ++ K+ + R + E + + +IS L + Sbjct: 207 DIEQEMKTAAARKDYELAAKKRNQLRDLKELGR---QVIFSDREFLDISKDEALVGLQQL 263 Query: 373 FALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMR 432 L IP RIE YD SH+ G + V MVV K QYRKF + + +D A M Sbjct: 264 LGLKKIPYRIEGYDISHMSGTNNVASMVVATNGLADKAQYRKFKM---QLPGNNDFAHMH 320 Query: 433 MVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRI 492 V+ RRFS ++ PD++++DGGKGQL AA L++ V I Sbjct: 321 EVISRRFS---------------GRHTSWPTPDLLLIDGGKGQLQAALKALEEKGVS--I 363 Query: 493 TIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDP 525 + +AK + E VK+ L+ R P Sbjct: 364 PAVGLAKRLE-----EIIVVKEPLTEASLSSRSP 392 >gi|193213751|ref|YP_001994950.1| hypothetical protein Ctha_0031 [Chloroherpeton thalassium ATCC 35110] gi|193087228|gb|ACF12503.1| DNA polymerase III, epsilon subunit [Chloroherpeton thalassium ATCC 35110] Length = 578 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 85/345 (24%), Positives = 152/345 (44%), Gaps = 5/345 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVT 63 + P GVY M VLY+GK+ NL+ R+ SY + N + + ++ + + I +T+T Sbjct: 227 KFPTKSGVYLMKSAKDEVLYIGKSKNLKSRVSSYFNQNIDRSEKVVELTHHVRKIDYTLT 286 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E+EALLLE+ +IK+ KPRFN LL+ +S+P++ + +H+ P L D YFG Sbjct: 287 GSELEALLLESKLIKQYKPRFNTLLKRYRSYPFLTFS-EHEFPKLEIALDVEDGDKEYFG 345 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPC-TGEISSEKYME 182 PF S++ ++ + L+R F +R C+D F R R C+ F + RC PC + E Y++ Sbjct: 346 PFPSLELLQHVVEILERYFKVRKCSDHDF-SRARFCIYFDLDRCFAPCKHPKHYKEAYIK 404 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH-IQNHNDSIYNR 241 + + + FLSG N + + R M + +E A + ++ +L +D + + Sbjct: 405 ELDQIRAFLSGKNPEIINVMIREMKALASENLFEEAADLKQKIHSLQKVFFRQSDIVNSV 464 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 + + + C + + + L + Y + Sbjct: 465 NENNVIAILPSENFSDCCKEYVLLFVRFGRLIDQKKVFEDETESLVPVIASVYHNGHSSP 524 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 EE +E +L ++ V +I E Sbjct: 525 TPCRKEEIDEMQILSNWIYQNKDSLHCFYVKDALTTEQIHETLQK 569 >gi|255605151|ref|XP_002538349.1| conserved hypothetical protein [Ricinus communis] gi|223512620|gb|EEF24033.1| conserved hypothetical protein [Ricinus communis] Length = 171 Score = 214 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 82/180 (45%), Positives = 120/180 (66%), Gaps = 11/180 (6%) Query: 431 MRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVEN 490 M+ VL+RRFS+L+K E+ + + PD+V++DGGKGQL AA ++ L V++ Sbjct: 1 MKEVLKRRFSRLVKEEKEGDDANR---------PDLVLVDGGKGQLDAALEIMADLGVDD 51 Query: 491 RITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK 550 IT+I +AKGP R AG+E+FF+ +L + P+LY++QRLRDEAHRFAI HR RR Sbjct: 52 -ITVIGVAKGPDRDAGLERFFIPGQTPFMLEPKSPVLYYLQRLRDEAHRFAIGAHRTRRS 110 Query: 551 -KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +PLDEI G+GP RK+ LL +FG+ K + R+S E L ++G+S+ +A +I+ F K Sbjct: 111 MDLKKNPLDEIEGVGPGRKKALLHAFGSAKGVGRASVEDLVKVDGVSQALAERIHAFFRK 170 >gi|288574957|ref|ZP_06393314.1| excinuclease ABC, C subunit [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570698|gb|EFC92255.1| excinuclease ABC, C subunit [Dethiosulfovibrio peptidovorans DSM 11002] Length = 489 Score = 214 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 121/242 (50%), Gaps = 6/242 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--SNNHTHRITHMISQINNIRFTV 62 P PGVY M D G ++YVGKA +L+KR+ SY S + R+ +++ I +I Sbjct: 14 TFPNRPGVYLMHDSDGEIIYVGKAKSLKKRVSSYFRHASGYASSRLRKLVASIEDISTIR 73 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EAL++E+ +IK++ P FN+ L+ ++ +PY+ +T P L +G + Sbjct: 74 TETEAEALIVESRLIKKIMPFFNVDLKMNERYPYVYVT-DDDFPRLEVT--LRKGEGLHI 130 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEKYM 181 GP+ S + + + ++R F LR+C + TRPCL + +C PC G S +Y Sbjct: 131 GPYVSAGELRRVLRLIERYFPLRTCRHDFSKVHLTRPCLRHSLGKCLAPCVGLCSKGEYG 190 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + + + L G + +++ + M++ + +E A RD L AL S Sbjct: 191 DVLDDVVLLLRGQTLEVTDRLRKRMDRRAREMRFEEAARLRDTLRALWRFSRQKVSATLS 250 Query: 242 MD 243 D Sbjct: 251 AD 252 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 78/250 (31%), Positives = 121/250 (48%), Gaps = 24/250 (9%) Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 + +L D + LP +P RI+ +D SH G G +VV + + YR+F + Sbjct: 254 DEDTWQVLCDLQEIVGLPTVPWRIDGFDISHSSGHETYGVVVVFEQGLPNPSLYRRFGIR 313 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 V+ DD M+ + RR+ + ++ E P ++++DGG QL Sbjct: 314 E--VQGIDDFRSMKETVTRRYRKCLEGE--------------APLPQLILIDGGPEQLRF 357 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 A L +L + I ++S+AK + F + E + L DP L +QR+RDE+H Sbjct: 358 ASEALSELGLS--IPVMSLAKREEL-----VFTLDSEEPIELERNDPALRLLQRVRDESH 410 Query: 539 RFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 R+AITTHR +R+ + S L+EI GIG R LL FG+V+ I+R L + GI + Sbjct: 411 RYAITTHRGKRQERLRRSALEEIPGIGKRRAAALLARFGSVQQIARLGESALMEVPGIGE 470 Query: 598 KIACKIYNHF 607 A I H Sbjct: 471 SHARNILRHL 480 >gi|196228132|ref|ZP_03126999.1| excinuclease ABC C subunit domain protein [Chthoniobacter flavus Ellin428] gi|196227535|gb|EDY22038.1| excinuclease ABC C subunit domain protein [Chthoniobacter flavus Ellin428] Length = 627 Score = 214 bits (544), Expect = 4e-53, Method: Composition-based stats. Identities = 71/241 (29%), Positives = 110/241 (45%), Gaps = 7/241 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH---THRITHMISQINNIRFT 61 +P PGVY M D RV+YVGKA NL+KR+ Y + + ++ I + + Sbjct: 16 DVPHKPGVYLMRDRFHRVIYVGKARNLRKRVGQYFTPSRAMRADLKTRALLDAIWDFEWH 75 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 + +E EALLLE +IK +PR+NI RDDK F + + + + P R + Y Sbjct: 76 LVGSEPEALLLEGRLIKEFRPRYNISFRDDKRFLLVKVDMREEWPRFRLTRMKNDESAKY 135 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPFA A+ +T+ +++ F + + R +Q+ T E+Y Sbjct: 136 FGPFAHAGALRQTLAFMRKKFGVLTFGRGNPSERELKSSTYQVPMKLADTT----MEQYR 191 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 E V A +FL+G + L E + + M +A D+E A R+ L L Sbjct: 192 ERVDRACEFLAGQSKELLEALEQEMKKAAAALDFEKAAELRNMLDDLRKTTKPMARYTRD 251 Query: 242 M 242 M Sbjct: 252 M 252 Score = 144 bits (364), Expect = 4e-32, Method: Composition-based stats. Identities = 71/267 (26%), Positives = 112/267 (41%), Gaps = 60/267 (22%) Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425 L L P+R+E +D S+I V MV + YR+F + V+ Q Sbjct: 268 LAALGDALGLGGPPRRMECFDISNISTTHIVASMVCFVDGRPANYLYRRFRIKT--VEGQ 325 Query: 426 DDCAMMRMVLERRFSQLIKN-------------------------------EENLNFHPK 454 DD A M V+ RR+++++ + + Sbjct: 326 DDFASMGEVVRRRYTRVLHEAAVGASRAPSSKAESEEHIDYAPQFSQEKLRDAVARVGDE 385 Query: 455 KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK 514 + P P ++I+DGGKGQLSAA L++L +E + II +AK + E + + Sbjct: 386 PETPGVPRLPSLIIVDGGKGQLSAACRELQRLRLE-EVPIIGLAKEFE-----EIYRPGR 439 Query: 515 GEALVLNMRDPILYFIQRLRDEAHRFAITTHRK-----------RRKKAAYSPLDEINGI 563 + L L L +QR+RDEA +R + A S LD+ G+ Sbjct: 440 PQPLQLPHDSGALQLLQRIRDEA---------APLCQWLSPVLMKR-RIAESILDDCPGV 489 Query: 564 GPLRKRLLLQSFGTVKMISRSSPETLA 590 RK+LLLQ FG+V + R++ E +A Sbjct: 490 SQHRKQLLLQKFGSVARLRRATAEQIA 516 >gi|255523097|ref|ZP_05390069.1| Excinuclease ABC C subunit domain protein [Clostridium carboxidivorans P7] gi|255513212|gb|EET89480.1| Excinuclease ABC C subunit domain protein [Clostridium carboxidivorans P7] Length = 366 Score = 214 bits (544), Expect = 4e-53, Method: Composition-based stats. Identities = 71/321 (22%), Positives = 145/321 (45%), Gaps = 7/321 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 +++P PGVY M D ++YVGK+ NL+ R+ SY +S +H+ ++ ++ + + + Sbjct: 6 KVKKLPFSPGVYLMKDSLDTIIYVGKSKNLRNRVGSYFINSKSHSPKVIKLVKNLKDFDY 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQG 119 +T TE EALLLE +I+ +KP +N +++ K + YI I K P + +++ Sbjct: 66 ILTDTEFEALLLECKLIREIKPIYNRQMKNTKGYCYIKINMNEKYPDIEIVSETNNSDGN 125 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 YFGP+ + + +EK + ++ + + + C+ + C G CT + Sbjct: 126 LYFGPYTNKNTIEKGLYGIKEHSKIL---CTNSSRKASGCIKYSRNLCIGMCTANPPKKH 182 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y V + K L+G + + E++ + MN A D+E A +RD + A+ H+ + I Sbjct: 183 YFALVEKVIKLLNGTDFTILEEMDQEMNNAAENFDFERAAKYRDYIRAIKHLISTAKIIA 242 Query: 240 NRMDCFSLYHNKNLACIQTCFF--HFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 ++ + L + FF + + + + + L + ++ + Sbjct: 243 FTEANKNIALVEFLNDKEIKFFLIRYNKVIFSEKYKISDFGVDEIKNKLKSNIISYFGNA 302 Query: 298 PCPENILLSEEAEETSLLEIS 318 + E +E ++ Sbjct: 303 LKTSVNIGKNEIDEAHIIYNY 323 >gi|298710910|emb|CBJ49263.1| excinuclease ABC subunit C [Ectocarpus siliculosus] Length = 890 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 74/243 (30%), Positives = 115/243 (47%), Gaps = 22/243 (9%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH---------------SNNHTHRITHM 51 P+ PG Y GR LY+GK+ NL R++SY + + RI M Sbjct: 26 PDEPGCYIFESGDGRKLYIGKSVNLSSRVQSYFSSSSSAGNGAEHAVRPGRSLSRRIAVM 85 Query: 52 ISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKS-FPYILITDKHKIPALYK 110 + I + VT + EALLLEA++I++ +P FN+LL+DDK +PY+ +T P + Sbjct: 86 TDLVERIDYIVTASGAEALLLEASLIRQHQPPFNVLLKDDKQNYPYVCVTWSEPYPRVLI 145 Query: 111 HRDSSTIQG----SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKR 166 RD G Y+GPF V+ T+ ++R LR A ++ + +PCL + + Sbjct: 146 TRDKPRRGGGSEDRYYGPFVDAGQVKSTVALVRRVLPLRERARPLY--KDKPCLNYDMGI 203 Query: 167 CSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA 226 C GPC G +S E Y E V A+ G L + M + E +E A + ++ Sbjct: 204 CPGPCQGLVSEEDYAETVRLAEMVFRGEGSQLLSTLQGRMESESRAERFERAGEIKAQMT 263 Query: 227 ALS 229 + Sbjct: 264 LVR 266 Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 30/144 (20%) Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGEALV--LN--MRDPILYFIQRLRDEAHRFAI 542 R+T +S+AK + E + E L L P + ++++RDEAHRFA+ Sbjct: 752 GGGRRVTFVSLAKKEE-----EVYVPGSSEPLAAALEAGPSSPGVMVLRQVRDEAHRFAV 806 Query: 543 TTHRKRRKKAAY-------------SP--------LDEINGIGPLRKRLLLQSFGTVKMI 581 HRK R + S I G+ + L +FG+++ Sbjct: 807 AYHRKLRGNDMFLPGRGTVATEETDSVNGGGGQQDFAAIAGLSSKARHELTITFGSLEGA 866 Query: 582 SRSSPETLASIEGISKKIACKIYN 605 + L I GI +A +I Sbjct: 867 RIAGEAELRRIPGIGPVLAKRILA 890 Score = 70.5 bits (171), Expect = 7e-10, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 61/144 (42%), Gaps = 7/144 (4%) Query: 335 GEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCS 394 GE+ + AL NA + L S L + L P RIE YD SH G + Sbjct: 497 GERHHLCVMALKNAELEAKRLLRGGESIARGLSQLARMLGLGSNPARIEGYDVSHTGGGN 556 Query: 395 AVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENLNFH 452 AV +V + +R++ + ++ D A +R V+ RRFS + Sbjct: 557 AVASLVCFLDGKASPKDHRRYRIRSPGIRKGHSDDYASLREVIARRFS-----PPTPSLR 611 Query: 453 PKKQEYSFPSWPDVVILDGGKGQL 476 + P++V++DGGKGQL Sbjct: 612 SPRPPSQANPVPELVLIDGGKGQL 635 >gi|150019333|ref|YP_001311587.1| excinuclease ABC subunit C [Clostridium beijerinckii NCIMB 8052] gi|149905798|gb|ABR36631.1| Excinuclease ABC, C subunit domain protein [Clostridium beijerinckii NCIMB 8052] Length = 366 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 79/349 (22%), Positives = 161/349 (46%), Gaps = 6/349 (1%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 +++P PGVY M D V+YVGK+ NL+ R+ SY +S +H+ +I ++ + + + Sbjct: 8 KVKKLPSSPGVYLMKDSLNNVIYVGKSKNLKSRVGSYFINSKSHSPKILKLVQNLKDFEY 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYK-HRDSSTIQG 119 +T TE EA LLE +IK++KP +N L+++ KS+ YI I K P + H + T Sbjct: 68 KITDTEFEAFLLECELIKKIKPAYNRLMKNPKSYSYIKIVLNEKYPNIEISHESNETDGN 127 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 YFGP++ + EK + ++ ++ S+ + +T C + + C G C E+ Sbjct: 128 IYFGPYSRKNIAEKGLYGIKEYCKIQ---CSINQRKTSSCFNYSLGLCIGMCLDTTPREE 184 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y+ +++ L+G + + +++ MN A+ K D+E+A +RD +++++++ I Sbjct: 185 YLNILNKIINLLNGNDKIILQEMEHIMNSASEKFDFETAAKYRDYISSVNYLLEKIKIIK 244 Query: 240 NRMDCFSLYHNKN-LACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 ++ + F G ++ + + + + FY + Sbjct: 245 FTKKNRNIALLEYLDNDRVKFFLIRGNKILFSEKYILKNFDLEAFKGILKDNILFYFNNG 304 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347 + EE +E+ ++ + I +P++ + N Sbjct: 305 DVPIEIGKEEIDESQIIYTYLKNKSNSCKHIIIPEEWLSVPNNYINIHN 353 >gi|240047734|ref|YP_002961122.1| Excinuclease ABC subunit C [Mycoplasma conjunctivae HRC/581] gi|239985306|emb|CAT05319.1| Excinuclease ABC subunit C [Mycoplasma conjunctivae] Length = 514 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 104/561 (18%), Positives = 201/561 (35%), Gaps = 64/561 (11%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P+ GVY+ D R+LYVGK+ N+ +RI Y + ++++ ++ + +I++T+ Sbjct: 12 NLPKQAGVYRFYDDQKRLLYVGKSKNIYERIHQYATGSINSYKTGKLLQETVDIQYTIVA 71 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF-- 122 E EAL+LE +I +P++NI L+DDK +PYI I +K+ ++ YF Sbjct: 72 NETEALVLEKRLISLYQPKYNIELKDDKGYPYIQIRKDNKLISIDIVYKIKR-GHKYFSY 130 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF A + L+ A F ++ + F + + I+ + Sbjct: 131 GPFLKRSAAFEIKKLLESELLYEKGAKITFENQEQVDDAFNLSKDILQKRKWINYYEQKM 190 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242 + L ++H + D + Sbjct: 191 NFAIENMQYE---------------------IAQKYFESITVLKQMAHQYQNVDLNSDEN 229 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302 F + + + F + D + ++ F+ +Y + P+ Sbjct: 230 LDFMYFDSVGKNNLVITFLFYRNGYMLSHRTFFVDILFSLENTITSFVNNYYKNNFLPQY 289 Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN----AHRSHTQKLST 358 + ++ F + + I + + +I+E A IN + KL Sbjct: 290 VFVT------EESSRFFENHLDFHIPIKIARSKSHLQILENAKINNNDFIKKDLRIKLEQ 343 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418 E + ILK + L I + DNSHI ++ K R FN Sbjct: 344 ENNLNNILKQMRYELNLEKND-IILLIDNSHIANQLPTTGVIYFLNGLHSKKYNRFFNYT 402 Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478 + + D + L++ FS PDV+ +DGG Q++ Sbjct: 403 GS---KKGDVNYLEQGLKKHFS-----------------VKNALIPDVIFVDGGIAQINT 442 Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538 + +L ++ +I + + K + + K G L ++ + I +++E Sbjct: 443 VETILLAKSL--KIPLFGLVKNSRHKT--DHILDKFGNKLEISQN--VFNLIANMQEEVD 496 Query: 539 RFAITTHRKRRKKAAYSPLDE 559 F+ + K R K L + Sbjct: 497 IFSKS---KLRNKIIKKILTQ 514 >gi|254672091|emb|CBA04766.1| hypothetical protein NMW_0307 [Neisseria meningitidis alpha275] Length = 141 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 67/143 (46%), Positives = 91/143 (63%), Gaps = 4/143 (2%) Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPI 526 ++DGGKGQ+ A V ++L + I ++ IAKGP+R AGME+ + GE L P Sbjct: 1 MIDGGKGQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEIFRLPPNSPA 58 Query: 527 LYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 L+ +Q +RDE+HRFAIT HRK+R KA S L EI GIG R++ LL FG ++ + +S Sbjct: 59 LHLLQTVRDESHRFAITGHRKKRDKARVTSSLSEIPGIGSKRRQALLTRFGGLRGVIAAS 118 Query: 586 PETLASIEGISKKIACKIYNHFH 608 E L +EGISK +A IYNH H Sbjct: 119 REDLEKVEGISKALAETIYNHLH 141 >gi|269792621|ref|YP_003317525.1| excinuclease ABC, C subunit [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100256|gb|ACZ19243.1| excinuclease ABC, C subunit [Thermanaerovibrio acidaminovorans DSM 6589] Length = 479 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 78/236 (33%), Positives = 120/236 (50%), Gaps = 5/236 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTVT 63 +PE PGVY M D G V+YVGKA L++R+ SY N + R+ ++ +++I T Sbjct: 12 SLPERPGVYIMRDRDGNVIYVGKAKALRRRVMSYFRHGNFASPRLRKLVETVHDISVMRT 71 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EAL+LEA +I++LKP FN+ L+ + +PYI +T + + P + R +G + G Sbjct: 72 ATEAEALILEARLIRQLKPFFNVELKMSERYPYIRVT-QERFPRVMVTR-VRKGEGLFIG 129 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSV-FRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 P+ V + + + L R F LR C+ + + RPC+ I +C PC G Y Sbjct: 130 PYVKVRELRELLRLLDRFFPLRKCSFPIEPPYDRRPCIYHAIGKCLAPCAGLCDEGTYRR 189 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKE-DYESAIIHRDRLAALSHIQNHNDS 237 V EA L G +L E++ R M A +E A RD + A+ + Sbjct: 190 MVAEAVMLLQGRGADLVERLKRRMEDAAYNRLAFEEAAHIRDMIRAIWRVGRQAPM 245 Score = 188 bits (476), Expect = 4e-45, Method: Composition-based stats. Identities = 79/277 (28%), Positives = 133/277 (48%), Gaps = 27/277 (9%) Query: 336 EKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSA 395 R +I ++ ++ E +L ++ LP +P RIE YD SH +G Sbjct: 228 HIRDMIRAIWRVGRQAPMAQVGDED-PLPMLWALQERLKLPQLPWRIEGYDISHHLGSDT 286 Query: 396 VGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK 455 VG VV + K YR++N+ DD + V+ RRF Sbjct: 287 VGSRVVFEQGRPNKALYRRYNIEGTLG---DDFRALEQVMRRRF---------------T 328 Query: 456 QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG 515 S P+++++DGG+ QL A L + V + + S+AKG + E + + Sbjct: 329 GSGSGDLMPNLILIDGGRVQLEFALRALDDMGV--NVPMASLAKGEE-----EIYLPGRV 381 Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQS 574 + L L+ D L +Q +RDEAHRFA+++HR RR + L++I G+G + LL Sbjct: 382 DPLRLDRSDGALRMLQMVRDEAHRFAVSSHRDRRGRRMRRTRLEDIPGVGKAKASQLLSR 441 Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 FG+V+ ++ +S + LAS+ GI +++A +I +H + Sbjct: 442 FGSVRNVASASLDELASMRGIGERLAKRISDHLKEED 478 >gi|282857765|ref|ZP_06266974.1| excinuclease ABC, C subunit [Pyramidobacter piscolens W5455] gi|282584435|gb|EFB89794.1| excinuclease ABC, C subunit [Pyramidobacter piscolens W5455] Length = 575 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 72/241 (29%), Positives = 126/241 (52%), Gaps = 4/241 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTVT 63 +P PGVY M D G+V+YVGKA L++R+ SY + + R+ ++ + +I F T Sbjct: 16 TLPLKPGVYLMHDETGKVIYVGKAKKLKRRVSSYFNHRDFAIPRLRKLVQTVQDISFIRT 75 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE EA ++E+ +IK ++P FN+ L+ +P+I++T K P + G FG Sbjct: 76 ETESEAFIVESRLIKAIQPFFNVELKMGSRYPFIVVT-AEKFPRVLVTHTRPK-TGRVFG 133 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEKYME 182 P+ S A+ +N ++ F R+C+ ++ + + RPC+++ I +C GPC G+ + ++Y E Sbjct: 134 PYTSAGAMRSMLNMIKNFFPARNCSMNLEKEKLARPCIMYDIGKCLGPCAGKCTEKEYGE 193 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242 V + LSG +L ++ M + + +E A RD + L S+ Sbjct: 194 TVDDILMLLSGQTADLVARLRPRMERLAKEMRFEEAAKARDTIRDLWKFSRQKLSVTLAD 253 Query: 243 D 243 D Sbjct: 254 D 254 Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats. Identities = 81/280 (28%), Positives = 127/280 (45%), Gaps = 27/280 (9%) Query: 338 RKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVG 397 R + + + S T + + LP +P RI+ +D SH G G Sbjct: 237 RDLWKFSRQ--KLSVTLADDLDEDTWFAMTRLRDLCGLPVVPWRIDGFDISHSAGRETYG 294 Query: 398 CMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE 457 VV + ++ YR++ + V+ DD MR + RR+ +I+ Sbjct: 295 VAVVFEQGYPNQSLYRRYAIKT--VEGIDDFRSMRETVLRRYRGMIE------------- 339 Query: 458 YSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA 517 S P ++++DGG QL+ A+ L + V I I++AK + F Sbjct: 340 -SQLPLPQLILIDGGPEQLAFARQALAE--VPVAIRTIALAKRDEL-----IFTEPDKPP 391 Query: 518 LVLNMRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFG 576 L L+ DP L +QR+RDE+HRFAITTHR++R + + S L+++ GIG + LLL +FG Sbjct: 392 LRLDWNDPALRLLQRVRDESHRFAITTHRRKRVSRLSRSALEDVPGIGKHKAALLLSTFG 451 Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNHFHKN-TSHTP 615 +V+ I+ S E L GI A KI + P Sbjct: 452 SVQRIAALSAEELQKAPGIGPVQAAKILGFLTETPEPEAP 491 >gi|187250616|ref|YP_001875098.1| excinuclease ABC C subunit domain-containing protein [Elusimicrobium minutum Pei191] gi|186970776|gb|ACC97761.1| Excinuclease ABC C subunit domain protein [Elusimicrobium minutum Pei191] Length = 437 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 75/243 (30%), Positives = 118/243 (48%), Gaps = 13/243 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHR---ITHMISQINNIRFTV 62 +P+ PGVY M G VLY+GKA NL R++ Y +N R + ++ + I + V Sbjct: 8 LPKSPGVYIMRSGLGEVLYIGKAKNLAARVRQYFLESNLHSRGWLLPSLLPLVAKIDYIV 67 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +E +AL+LE+ +IK+ KP FN +DDKS+PYI I+ P R+ G Y+ Sbjct: 68 AASERDALVLESRLIKKYKPFFNTDGKDDKSYPYIKIS-DEDFPRGLLTRN-KKGPGEYY 125 Query: 123 GPFASVDAVEKTINS--------LQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE 174 GP + A++ + L+ + S + + + R C+ F +C PC G+ Sbjct: 126 GPHPNAFAIKSLLRFLWTSGFAPLRPCKWNFSLSKPLDERKIRTCVYFHTGQCPAPCAGK 185 Query: 175 ISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234 IS + Y + V + F G +K +A+ M A+ DYESA +RD L L + Sbjct: 186 ISYKDYQKIVQRFRDFAEGNFGKMKHGLAKAMKMASKNMDYESAARYRDFLNTLERMSER 245 Query: 235 NDS 237 Sbjct: 246 ILV 248 Score = 124 bits (312), Expect = 4e-26, Method: Composition-based stats. Identities = 58/194 (29%), Positives = 90/194 (46%), Gaps = 25/194 (12%) Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN-DVKTQ 425 K + +P+ IE +D S + G AVG MV + YR+F + Sbjct: 267 KRLGEVLGFAKVPRHIETFDTSGLYGRYAVGSMVCYIDGKKHHAHYRRFKIKSVLPGTGN 326 Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485 DD MM ++ RR + L K + + PD++++DGGKGQL A+ ++ Sbjct: 327 DDFLMMTEIVGRRLAALKK--------------AGGALPDLMVIDGGKGQLGMAEAAAQR 372 Query: 486 LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545 V ++ IS+AK + E F + E++ L + DP L + +RDE HRF IT H Sbjct: 373 AGV--KMKFISLAKREE-----EIFVTGRSESIKLPIGDPALNLLMEMRDEVHRFGITYH 425 Query: 546 RKRRKKAAYSPLDE 559 R R K L++ Sbjct: 426 RHLRDKNL---LED 436 >gi|294055836|ref|YP_003549494.1| excinuclease ABC C subunit domain protein [Coraliomargarita akajimensis DSM 45221] gi|293615169|gb|ADE55324.1| excinuclease ABC C subunit domain protein [Coraliomargarita akajimensis DSM 45221] Length = 490 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 72/254 (28%), Positives = 115/254 (45%), Gaps = 5/254 (1%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH----THRITHMISQINN 57 ++P PGVY M D G+++YVGKA +L+KR+ +Y ++ ++ MI I++ Sbjct: 12 QLRRLPHKPGVYLMKDRLGQIIYVGKAKDLKKRVSTYFQASRKLMIAQPKVRAMIDLIHD 71 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117 + +E EALLLE+ +IK+ KPR+N +L DDK + + + + +P R+ Sbjct: 72 FDTILVKSEAEALLLESQLIKKHKPRYNTVLTDDKRYLLVRVDLREALPRFRLTRNRVDS 131 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFF-LRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176 Q +FGPFA + T+ L+R F L S A + R L + E++ Sbjct: 132 QSRHFGPFAHSGHLRTTLAELRRKFGILLSDAKPIDLGNGRWRLYDDARAEIYEHPNEVT 191 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 E Y E + A +FL G ++ M A DYE A RD + AL Sbjct: 192 VEDYRERMEAACEFLEGKARAWLAELKEQMLAAAEARDYEKAASVRDMIEALERTAERTR 251 Query: 237 SIYNRMDCFSLYHN 250 + + Sbjct: 252 KFERNLTGTHNHRQ 265 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 82/341 (24%), Positives = 144/341 (42%), Gaps = 27/341 (7%) Query: 271 TFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKIT 330 + L D+ + + + + Y ++ L E + + L + Sbjct: 172 RWRLYDDARAEIYEHPNEVTVEDYRERMEAACEFL--EGKARAWLAELKEQMLAAAEARD 229 Query: 331 VPKQGEKRKIIEQALINAHR--SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNS 388 K R +IE A R + L+ +H+ ++K ++ LP +P +E +D S Sbjct: 230 YEKAASVRDMIEALERTAERTRKFERNLTGTHNHRQVVKRLKEQLQLPSLPDHMECFDIS 289 Query: 389 HIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEEN 448 HI G V MV + YR++ + DD M V+ RR+ +L + Sbjct: 290 HISGSFCVASMVRFQHGRPDRRNYRRYKIKS--FVGNDDFRAMEEVVGRRYRRLHDEGKA 347 Query: 449 LNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGME 508 +PD+V++DGG GQ++AA +E ++I +AK + Sbjct: 348 --------------FPDLVVIDGGAGQVTAALKAFLAQGLE-PPSLIGLAKKEET----- 387 Query: 509 KFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLR 567 F E L L+ DP L +Q +RDEAH FA + + + R + S LD+ G+GP + Sbjct: 388 IIFSDGREPLNLSHHDPALRLLQHIRDEAHHFANSFNAELRSQRLRESILDDFKGLGPTK 447 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 + LL+ FG++ + ++ E + +EGI K A + Sbjct: 448 RMALLKHFGSLDKLRKADAEAITQVEGIGPKTAKGLVEFLQ 488 >gi|89893975|ref|YP_517462.1| hypothetical protein DSY1229 [Desulfitobacterium hafniense Y51] gi|219668351|ref|YP_002458786.1| excinuclease ABC C subunit domain protein [Desulfitobacterium hafniense DCB-2] gi|89333423|dbj|BAE83018.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219538611|gb|ACL20350.1| Excinuclease ABC C subunit domain protein [Desulfitobacterium hafniense DCB-2] Length = 376 Score = 208 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 86/346 (24%), Positives = 150/346 (43%), Gaps = 2/346 (0%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 + +PE PGVY M D G ++YVGKA NL+ R+ Y + + ++ MI +I + + Sbjct: 10 KLKDLPEQPGVYLMQDSLGNIIYVGKAKNLKNRVSQYFYKQKDRDPKVEEMILRIADWEY 69 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 + TE++ALL E +IK +KP +N +++ + + YI I P L ++ G Sbjct: 70 RIVDTELDALLEECRLIKEIKPHYNRQMKNHQKYVYIKI-PDESFPRLDIVQEREAGGGI 128 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 Y+GPF+S VE + L F +R C+ CL Q+ C G CTG++SSE+Y Sbjct: 129 YYGPFSSRHRVETAVEGLSDIFLIRKCSAPGRSKGGNGCLYRQLGTCVGVCTGKVSSEEY 188 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 E + + + G+ ++++ M +A ++E A +R+ L L +IQ + Sbjct: 189 RERLDGVCQAIEAGDKGAMKELSSRMARAVEGLNFEMAARYREYLLGLRYIQGRQKFLKG 248 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 SL + L + F + + + Q D+P Sbjct: 249 TYRNKSLLALEQLDTEKKTVKVFLIKGNRVVTSRVLTWLDEDLKQFLREITQALADQPGC 308 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 L +E +E +L+ K + IT + + + Sbjct: 309 SRQLTQQEVDEAQILDSYLRKDRVISIPITQKALKQGAFVEDMLKR 354 >gi|168701441|ref|ZP_02733718.1| excinuclease ABC subunit C [Gemmata obscuriglobus UQM 2246] Length = 448 Score = 208 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 74/247 (29%), Positives = 117/247 (47%), Gaps = 6/247 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRF 60 + P GVY M D A V+YVGKA NL+ R SY + RI + + ++ + Sbjct: 22 KVREFPTSSGVYLMKDAAANVIYVGKAKNLRNRASSYFSKEAVNDPRIKDWMPLVRDVDY 81 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T ++A+ EA MIK L+P+FN L+DDK+FPY+ I + + P + R Sbjct: 82 IETTDAIQAVFTEARMIKDLRPKFNKDLKDDKTFPYLQIRTREEFPRVEITRKPRRKGVR 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEI 175 +GPF S + ++ LQR R+C + RPCLL I+RC+GPC + Sbjct: 142 LYGPFTSTKPLRIAVDVLQRLLQFRTCTLDIKSGEDRWKWFRPCLLHSIRRCTGPCNFRV 201 Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 S + Y + + L G L ++ + M A + ++E A RD + A+ + Sbjct: 202 SRDDYRAQIKKLIFILEGKTAKLVRRMEKQMRAAADELNFEKARRIRDEITAVQKLDMRG 261 Query: 236 DSIYNRM 242 D+ + Sbjct: 262 DAAKDVQ 268 Score = 128 bits (322), Expect = 3e-27, Method: Composition-based stats. Identities = 59/189 (31%), Positives = 87/189 (46%), Gaps = 22/189 (11%) Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 L K L P+ IE D +H+ G V +V + K YR+F + V Sbjct: 278 KGLVGLRKVLGLETTPRTIEGMDIAHLSGQDTVASLVSFLDGIPFKPGYRRFKIKS--VA 335 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD A MR V+ RRF +L +E +PD++++DGGKGQL+AA Sbjct: 336 GVDDFASMREVVTRRFRRLRDEDE--------------VFPDILLIDGGKGQLNAAVEAF 381 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 + L + +IS+AK + E F E++ L+ L +Q +RDE+HRFA Sbjct: 382 QALGIT-PPCLISLAKQEE-----EIFRPGVEESIKLSRHSAALRLLQYVRDESHRFAQH 435 Query: 544 THRKRRKKA 552 H R+K Sbjct: 436 YHHMLRRKR 444 >gi|257484568|ref|ZP_05638609.1| excinuclease ABC subunit C [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 166 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 73/181 (40%), Positives = 104/181 (57%), Gaps = 17/181 (9%) Query: 432 RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENR 491 L RR+S++ E L PDV+++DGGKGQ+S A+ VL +L V + Sbjct: 1 HQALTRRYSRIKAGEGKL--------------PDVLLVDGGKGQMSMARDVLNELQVPDL 46 Query: 492 ITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK 550 I ++ +AKG R AG E ++ L P L+ IQ++RDEAHRFAIT HR RR Sbjct: 47 I-LLGVAKGTTRKAGFETLYLNDAAHEFTLPGDSPALHLIQQIRDEAHRFAITGHRARRG 105 Query: 551 KAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 K S L+ + G+GP R+R LL+ FG ++ +SR+S + +A GISKK+A IY + H Sbjct: 106 KTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAESIYANLHS 165 Query: 610 N 610 Sbjct: 166 E 166 >gi|182412978|ref|YP_001818044.1| excinuclease ABC subunit C [Opitutus terrae PB90-1] gi|177840192|gb|ACB74444.1| excinuclease ABC C subunit domain protein [Opitutus terrae PB90-1] Length = 510 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 109/238 (45%), Gaps = 5/238 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT----HRITHMISQINN 57 Q+P+ PGVY M D GR+LYVGKA +L+KR+ SY +I +I I++ Sbjct: 12 KVRQLPDKPGVYLMKDRLGRILYVGKARSLKKRVSSYFQQGRARTVMQPKIRALIPLIHD 71 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117 +E EALLLE +IK+ +PR+N DDK F + + + ++P R Sbjct: 72 FDTIEVKSEPEALLLEGKLIKQWRPRYNTDFTDDKRFLLVRVDLREELPRFRLTRLKKDD 131 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTR-PCLLFQIKRCSGPCTGEIS 176 YFGPFA + KT+ ++R F + + + L +++ ++ Sbjct: 132 GSRYFGPFAHSGLLRKTLAQMRRQFGILLGDGTPHKLADGTWQLYDDVRQEIYGGMLHVT 191 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234 E Y V +A FL G + E + M +A K+ +E A RD + AL Sbjct: 192 PEAYRRRVDDACAFLEGKSREWLETLRAEMAEAATKQLFEKAAELRDVIFALEETLAK 249 Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats. Identities = 79/254 (31%), Positives = 119/254 (46%), Gaps = 25/254 (9%) Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 L+ + A P IE +D SHI G V MV K+ YR+F + Sbjct: 266 EALRALGEALARPPPR-TIECFDISHISGTFVVASMVHFANGRPDKDNYRRFQIKS--FI 322 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD M V+ RR+ +L + S+PD+V++DGG+GQ+ AA Sbjct: 323 GNDDFRAMEEVVGRRYRRLAEEGR--------------SFPDLVVIDGGRGQIGAAIKAF 368 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 ++ + II +AK + FFV + L L + P L +QR+RDEAHRFA T Sbjct: 369 VAADLTPPV-IIGLAKKHET-----IFFVDERPPLNLPLNHPGLNLLQRVRDEAHRFANT 422 Query: 544 THRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 + R KK S LD+ G+GP+R+ LL FG++ + +S E + +EG K+A + Sbjct: 423 YNAVLRSKKIRESVLDDFAGLGPVRRAALLAHFGSIDRLRAASIEEIGEVEGFGPKLAAE 482 Query: 603 IYNHF-HKNTSHTP 615 ++ K P Sbjct: 483 LHAFLARKPEPVAP 496 >gi|163784243|ref|ZP_02179165.1| repair excision nuclease subunit C [Hydrogenivirga sp. 128-5-R1-1] gi|159880485|gb|EDP74067.1| repair excision nuclease subunit C [Hydrogenivirga sp. 128-5-R1-1] Length = 347 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 78/346 (22%), Positives = 153/346 (44%), Gaps = 7/346 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 ++ PE GVY + + +Y+GKA NL+ R+K ++ + + ++ + + + + Sbjct: 5 KIKEAPEKSGVYIFKNKN-KYIYIGKAKNLKNRLKGHLQALKYDYKEQKIFEESTQLEWI 63 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 +T ++ EA +LE +IK+ KP++N++L+ +P ++IT+ P + R I G Y Sbjct: 64 ITSSDYEAFILENALIKQYKPKYNVMLKSGSGYPMLVITNDE-YPTVKISRKYGEIDGEY 122 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPF + + F LR+C R C + + CS PC +IS + YM Sbjct: 123 FGPFIPAKTARAMKQLIHKVFKLRTC--DPMPKRNIACFDYHLGLCSAPCVNKISKKDYM 180 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 V AK FLSG + ++ + + K +E A + RD+++AL ++ + Sbjct: 181 LDVKSAKAFLSGDAGKVIYQLYDRIEEYMKKMLFEKAAVVRDQISALENLIKKQKVVGIP 240 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 +++ NR LK + I+S + + P Sbjct: 241 EKEADIFYIN---YPDIYITVIRTNRIIGMDKLKVSNIEDEENIVSLIISYYKQGNFIPG 297 Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347 ++++++ E+ L+ G ++K+ E I+Q + + Sbjct: 298 KVVINKQLEDIENLQKWLSNVAGKEIKVETQIIPEVEAFIKQNIKH 343 >gi|149192493|ref|ZP_01870679.1| excinuclease ABC subunit C [Vibrio shilonii AK1] gi|148833674|gb|EDL50725.1| excinuclease ABC subunit C [Vibrio shilonii AK1] Length = 142 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 58/131 (44%), Positives = 81/131 (61%), Gaps = 1/131 (0%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D V+YVGKA +L+KR+ SY + + ++S I I TV Sbjct: 12 LKTVTNQPGVYRMYDAESVVIYVGKAKDLKKRLTSYFRKRVDSEKTRALVSNIAKIDVTV 71 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T TE EAL+LE N IK+ P++N+LLRDDKS+PYI ++ HK P L HR + +G YF Sbjct: 72 THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLS-GHKHPRLSMHRGARRKKGEYF 130 Query: 123 GPFASVDAVEK 133 GP+ AV + Sbjct: 131 GPYPDSGAVRQ 141 >gi|218506228|ref|ZP_03504106.1| excinuclease ABC subunit C [Rhizobium etli Brasil 5] Length = 195 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 116/192 (60%), Positives = 140/192 (72%) Query: 33 KRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDK 92 KR+ +Y H++RI M+ Q N+ F T TE EALLLEAN+IKRL+PRFN+LLRDDK Sbjct: 1 KRVGNYAVGRVHSNRIAQMVRQTANMEFVTTRTETEALLLEANLIKRLRPRFNVLLRDDK 60 Query: 93 SFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVF 152 SFPYILIT H+ PA++KHR + +G YFGPFAS AV +TINSLQR F +R+C DSVF Sbjct: 61 SFPYILITGDHRAPAIFKHRGARARKGDYFGPFASAGAVGRTINSLQRAFLIRTCTDSVF 120 Query: 153 RHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLK 212 RTRPCLL+QIKRCSGPCT E+S E Y E V EAK FLSG + +K +A MNQA Sbjct: 121 ETRTRPCLLYQIKRCSGPCTHEVSDEGYAELVQEAKDFLSGKSQKVKSHMAEAMNQAAED 180 Query: 213 EDYESAIIHRDR 224 D+E A I+RDR Sbjct: 181 LDFERAAIYRDR 192 >gi|15896707|ref|NP_350056.1| excinuclease ABC subunit C [Clostridium acetobutylicum ATCC 824] gi|15026559|gb|AAK81396.1|AE007844_6 Excinuclease ABC, subunit C (uvrC) [Clostridium acetobutylicum ATCC 824] gi|325510873|gb|ADZ22509.1| Excinuclease ABC, subunit C [Clostridium acetobutylicum EA 2018] Length = 373 Score = 206 bits (525), Expect = 8e-51, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 123/238 (51%), Gaps = 5/238 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 ++P PGVY M D ++YVGK+ NL+ R++SY +S +H+ ++ ++ + + + Sbjct: 6 KIRKLPSAPGVYLMKDSLNTIIYVGKSKNLRSRVQSYFVNSKSHSSKVLKLVKNLKDFDY 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-G 119 VT TE EALLLE +IKR+KP +N ++ K + YI I K P++ + + Sbjct: 66 IVTDTEFEALLLECKLIKRIKPIYNRQMKSPKGYCYIKIKLDEKYPSVEIKSNDERVGES 125 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 YFGP+ S VEK + ++ + + + CL + C G CT S E Sbjct: 126 LYFGPYTSKSTVEKALYGIKEHMKIL---CTNSSKKASGCLKYSTGLCLGMCTANPSFEY 182 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 Y + + + LSG + + ++ + MN A+ D+E+A +RD + +++++ + Sbjct: 183 YSSLIEKIIELLSGKDITIVGEMEKKMNIASNNFDFENAAKYRDFIKSINYLTSTAKI 240 >gi|319652381|ref|ZP_08006497.1| hypothetical protein HMPREF1013_03110 [Bacillus sp. 2_A_57_CT2] gi|317395843|gb|EFV76565.1| hypothetical protein HMPREF1013_03110 [Bacillus sp. 2_A_57_CT2] Length = 359 Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats. Identities = 71/281 (25%), Positives = 129/281 (45%), Gaps = 5/281 (1%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFTV 62 + +P PGVY + D G+ LYVGKA NL+ R++SY ++ H + +I ++ + + + + Sbjct: 2 KNLPLTPGVYLLKDSQGQTLYVGKAKNLKNRVQSYFRNSKHLSPKIKKLVKHLRDFDYIL 61 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD-SSTIQGSY 121 T TE EA +LE +IK +KP +N +++ +SF YI ++ + + Y Sbjct: 62 TDTEFEAFMLECQLIKSIKPLYNRMMKSPQSFIYISVSLTGNHRKIDIAYNLIENDGKVY 121 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGPF S VE+ + L+ F L S + CL + + C G C G + ++Y Sbjct: 122 FGPFTSRSNVERALQGLKECFKL---NCSNLTGKNSACLNYSLGSCIGRCLGGPAEQQYN 178 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 + + FL G + ++ E + + M A+ D+E+A +RD A+S + I Sbjct: 179 DILDRFIGFLKGTDMSILEDMNQMMLNASEAFDFEAASAYRDHTQAVSSMLKKEKVIEFT 238 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN 282 + ++ + L F + + + Sbjct: 239 EENHNIVAIERLTDSTIKLFLIKRTDILFSHSYAAAGNIED 279 >gi|309805704|ref|ZP_07699744.1| excinuclease ABC, C subunit [Lactobacillus iners LactinV 09V1-c] gi|308164957|gb|EFO67200.1| excinuclease ABC, C subunit [Lactobacillus iners LactinV 09V1-c] Length = 367 Score = 204 bits (518), Expect = 4e-50, Method: Composition-based stats. Identities = 95/385 (24%), Positives = 161/385 (41%), Gaps = 37/385 (9%) Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--DKP 298 + D F+ Y ++ IQ F + T F+ QFY ++ Sbjct: 7 QRDIFNFYVSQGWISIQILFIRQSKLMRRETKIFNLTDIDKAKDEFESFIVQFYNAKNRL 66 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354 P IL+ + +SL + + P +G+K+ +++ A N+ Sbjct: 67 FPNEILVPKGVNASSLAAVLKVRVKT-------PSRGQKKALLDMAYENSKIKLDEKIRL 119 Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + + ++ LP+ RIE +D+SHI G V +VV + K++YRK Sbjct: 120 LELNNLKTKGAQEEIFNALGLPYGS-RIESFDHSHIQGTDPVSALVVFIDGMPAKHEYRK 178 Query: 415 FNLHPN--DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472 F L D+ R V+ RR+S+++K P+++++DGG Sbjct: 179 FKLKGEIEHQNGADEVKNTREVVRRRYSRMLKEH--------------LVLPNLILMDGG 224 Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF----FVKKGEALVLNMRDPILY 528 K Q+ A VL+ + I + + K F ++ + L+ + Y Sbjct: 225 KIQVDACLDVLRN-ELNVNIPVAGMVKDNCHRTNHLIFGDPTVGEELRTIPLDSKSQAFY 283 Query: 529 FIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 I R++DE HRFAIT HR K + S LDEI GIGP + LL++FG++K I +S E Sbjct: 284 LITRIQDEVHRFAITFHRNLHNKNSLASKLDEIKGIGPRSRNKLLKNFGSLKKIREASIE 343 Query: 588 TLASIEGISKKIACKIYNHFHKNTS 612 L I G++ A + + + Sbjct: 344 DLKGI-GLTLTQAQSVKLVLENSQN 367 >gi|23428534|gb|AAL11448.1| uvrC-like protein [Serratia plymuthica] Length = 137 Score = 203 bits (517), Expect = 5e-50, Method: Composition-based stats. Identities = 57/126 (45%), Positives = 76/126 (60%), Gaps = 1/126 (0%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY+M D G V+YVGKA +L+KR+ SY + + ++ I I TVT Sbjct: 13 TVTSQPGVYRMYDATGTVIYVGKAKDLKKRLASYFRLQVGSRKTETLVKNIAQIDVTVTH 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE EALLLE N IK +PR+N+LLRDDKS+P I ++ P L HR + +G YFGP Sbjct: 73 TETEALLLEHNYIKLYQPRYNVLLRDDKSYPLIFLS-ADSHPRLAVHRGAKHAKGEYFGP 131 Query: 125 FASVDA 130 F + A Sbjct: 132 FPNSYA 137 >gi|161221615|gb|ABX60171.1| exonuclease [Halomonas anticariensis] Length = 178 Score = 203 bits (516), Expect = 7e-50, Method: Composition-based stats. Identities = 72/159 (45%), Positives = 106/159 (66%), Gaps = 2/159 (1%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 PGVY+MLD G Y+GKA L+ R+ SY +T + ++++I +I T+T +E Sbjct: 13 AAPGVYRMLDDRGDTPYIGKAKRLKSRLASYFRGALNT-KTQALVARIADIEVTLTRSET 71 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHR-DSSTIQGSYFGPFA 126 EALL+E +IK L+P +NILLRDDKS+P++ ++D+H PAL R + G Y GP+ Sbjct: 72 EALLMEQALIKELRPPYNILLRDDKSYPFVFVSDRHPYPALEHKRARNRRSDGRYLGPYP 131 Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIK 165 S AV +T++ +Q+ F +R+C DSVF +RTRPCL FQI+ Sbjct: 132 SSGAVRETLSLMQKIFRIRNCEDSVFGNRTRPCLXFQIE 170 >gi|315453015|ref|YP_004073285.1| excinuclease ABC subunit C [Helicobacter felis ATCC 49179] gi|315132067|emb|CBY82695.1| excinuclease ABC subunit C [Helicobacter felis ATCC 49179] Length = 419 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 75/249 (30%), Positives = 117/249 (46%), Gaps = 14/249 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMIS 53 E +PE GVY D ++LY+GKA NL+KRI SY + + R+ M+S Sbjct: 5 QLEHLPESCGVYLYWDATEKLLYIGKAKNLKKRILSYFTLQAGRAVPNPRNNARVRDMVS 64 Query: 54 QINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD 113 +I + + +T +E EALLLE +IK+ +PR+NILL+D K++PY+ P L+ R Sbjct: 65 KIARVEWRLTPSEHEALLLEDRLIKQYQPRYNILLKDSKTYPYVCFDPTLPYPVLHLQRH 124 Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 FGPF+ ++ + S+ L V C+ ++IKRC PC G Sbjct: 125 PRKH-LRCFGPFS--LGAKEILESVLDFIPLVQSPSCV--RGKHACVFYEIKRCLAPCEG 179 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 +IS + Y + E L L ++ M +E +E A I RDR + + ++ Sbjct: 180 KISPQDYALLLQEGVALLENL-PALSVRLQARMRALASQERFEEAAIWRDRWSKIQNLLE 238 Query: 234 HNDSIYNRM 242 Sbjct: 239 RLAYPLEEC 247 Score = 115 bits (287), Expect = 3e-23, Method: Composition-based stats. Identities = 57/188 (30%), Positives = 87/188 (46%), Gaps = 31/188 (16%) Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426 + L R+E++D SH VG MVV E + K YR++ ++ +D Sbjct: 249 RALQILLGLKTPVTRVEVFDVSHHAKSHCVGGMVVFSEGKWEKRAYRRY-----VLQGKD 303 Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486 + + MR +LERR +L PD+ ++DGG+ Q+ A VL+ Sbjct: 304 EYSQMRELLERRVQRLQ------------------HPPDLWLIDGGRAQVRIALQVLQSA 345 Query: 487 NVENRITIISIAK----GPKRSAGMEK--FFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 + + ++ IAK G R + + + L L DP L F+QRLRDEAHR+ Sbjct: 346 G--HSVEVLGIAKAKFKGRTRRSLGDVPDVIYTRDRVLHLKANDPCLQFLQRLRDEAHRY 403 Query: 541 AITTHRKR 548 AIT HR + Sbjct: 404 AITFHRTK 411 >gi|261404343|ref|YP_003240584.1| Excinuclease ABC subunit C domain-containing protein [Paenibacillus sp. Y412MC10] gi|261280806|gb|ACX62777.1| Excinuclease ABC C subunit domain protein [Paenibacillus sp. Y412MC10] Length = 368 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 71/305 (23%), Positives = 138/305 (45%), Gaps = 7/305 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRF 60 +++P PGVY M D G V+YVGK+ +L+KR++SY ++N H+ ++ ++ + ++ Sbjct: 4 KIQELPLSPGVYLMRDSRGTVIYVGKSKSLKKRVQSYFYNNKSHSPKVKRLVQHVKDLEH 63 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS---STI 117 VT TE EA +LE +I+ +KP +N +++ + YI++ K L + Sbjct: 64 IVTDTEFEAFMLECRLIQDIKPMYNRKMKNPLGYSYIVLRQKRDWRWLEITDTLDEGTHE 123 Query: 118 QGSYFGPFA-SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176 +FGP+ S ++E + ++ + PCL + I C G C G S Sbjct: 124 PSRFFGPYTASRHSLEHAVQKVKECCKIACNHAPAASSANTPCLNYSIGLCLGKCLGGES 183 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + ++ E + L G + L +++ R M A + D+E A +RD + A++ + + D Sbjct: 184 ARQFDEVMDRFIALLQGDDRRLYDEMERTMLGAAERFDFEQAAKYRDGMEAVNLLLSKRD 243 Query: 237 SIYNRMDCFSLYHNK--NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294 I + S+ + N I+ + + T ++ + + L Y Sbjct: 244 VIEFAEENHSIVVYEYLNEDTIKLFLIKGNVVLHSERCSVATTADIESLRQRVKALILSY 303 Query: 295 TDKPC 299 + Sbjct: 304 FTRDP 308 >gi|153831516|ref|ZP_01984183.1| UvrABC system protein C [Vibrio cholerae 623-39] gi|148873002|gb|EDL71137.1| UvrABC system protein C [Vibrio cholerae 623-39] Length = 178 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 65/193 (33%), Positives = 95/193 (49%), Gaps = 18/193 (9%) Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 + DD A M VLERR+S+ + PD++ +DGGKGQL+ A Sbjct: 1 TGITGGDDYAAMAQVLERRYSKQLD---------------SSKIPDIIFIDGGKGQLNRA 45 Query: 480 QGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537 ++ + II IAKG R G+E G+ L P L+ IQ +RDE+ Sbjct: 46 YEIISSCWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQHIRDES 105 Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 H AI HR +R K S L+ I G+GP R++ LL+ G ++ + R+S E +A + GIS Sbjct: 106 HNHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPGIS 165 Query: 597 KKIACKIYNHFHK 609 +A IY + Sbjct: 166 HALAENIYQALKQ 178 >gi|329930147|ref|ZP_08283765.1| GIY-YIG catalytic domain protein [Paenibacillus sp. HGF5] gi|328935304|gb|EGG31783.1| GIY-YIG catalytic domain protein [Paenibacillus sp. HGF5] Length = 368 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 64/255 (25%), Positives = 124/255 (48%), Gaps = 5/255 (1%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRF 60 +++P PGVY M D G V+YVGK+ +L+KR++SY ++N H+ ++ ++ + ++ Sbjct: 4 KIQELPLSPGVYLMRDSRGTVIYVGKSKSLKKRVQSYFYNNKSHSPKVKRLVQHVKDLEH 63 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST---I 117 VT TE EA +LE +I+ +KP +N +++ + YI++ K L Sbjct: 64 IVTDTEFEAFMLECRLIQDIKPMYNRKMKNPLGYSYIVLRQKRDWRWLEFTDTLDEGGPD 123 Query: 118 QGSYFGPFA-SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176 + FGP+ S ++E + ++ + PCL + I C G C G + Sbjct: 124 RSRCFGPYTASRHSLEHAVQKVKECCKIACNHTPAASSANTPCLNYSIGLCLGKCLGGET 183 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + ++ E + L G + +L +++ R M A + D+E A +RD + A++ + + Sbjct: 184 ARQFDEIMDRFIALLQGDDRSLYDEMERTMLGAAERFDFEQAAKYRDGMEAVNLLLSKRH 243 Query: 237 SIYNRMDCFSLYHNK 251 I + S+ + Sbjct: 244 VIEFAEENHSIVVYE 258 >gi|294507448|ref|YP_003571506.1| DNA polymerase III epsilon subunit [Salinibacter ruber M8] gi|294343776|emb|CBH24554.1| DNA polymerase III epsilon subunit [Salinibacter ruber M8] Length = 563 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 80/345 (23%), Positives = 138/345 (40%), Gaps = 9/345 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVT 63 +P+ PGVY M + +G LY+GKA L R++S+ + + R M+ ++ ++ +T T Sbjct: 211 DVPDEPGVYVMKNRSGTPLYIGKAKRLPDRLRSHFTAVESSGARKRKMLQKVRSVDWTTT 270 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE+EA+LLE+ IK KPR+N R + P+I + H+ P + R Y+G Sbjct: 271 ATELEAILLESRRIKAEKPRYNRAQRRYYNRPFIRLDTAHEYPTVSWTRRLEADGAEYYG 330 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P + + E ++ + R F LR C D R CL + RC+ PC + + E Y Sbjct: 331 PVRNTEQAEMVVDVVGRFFQLRECDDERLHLGQR-CLYADMDRCTVPCETKDA-EAYATV 388 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD 243 V + FL+G + ++ + M +A+ ++E A RD L L I + Sbjct: 389 VERVRAFLTGQDQSVLGTMWDRMQRASDNLNFEKAAELRDTLEQLERILEKQRVAAAPVR 448 Query: 244 CFSLYHNKNLAC----IQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 + + FG+ + E L R + + Sbjct: 449 QHNAALVHQAPDRAGRVDVMLVRFGRFEESIACAAPPSPEE--RDSLLERCRSVFDVEAD 506 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344 P +A E LL + + + + + Sbjct: 507 PPETFSKRDATEIRLLSHWVYAHRDELTAVRWTPRTSPADLADAI 551 >gi|219854880|ref|YP_002472002.1| hypothetical protein CKR_1537 [Clostridium kluyveri NBRC 12016] gi|219568604|dbj|BAH06588.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 363 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 75/351 (21%), Positives = 165/351 (47%), Gaps = 9/351 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 +++P PGVY M D ++YVGK+ NL+ RI SY S +HT ++ ++ + + + Sbjct: 8 KIKELPSSPGVYLMKDSLNSIIYVGKSKNLKNRIASYFQNSKSHTPKVLKLVKNLRDFDY 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD-SSTIQG 119 +T TE EA +LE +IK++KP +N +++ +++ YI I K P + + Sbjct: 68 ILTDTEFEAFMLECKLIKQIKPIYNKQMKNTQAYCYIKI--NQKYPDIKISNEYVKNDGN 125 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 YFGP+ S + VE+ I ++ + + F+ + CL + + C G C ++ Sbjct: 126 LYFGPYPSRNTVERGIQGIKECCKIF--CSNNFKKASY-CLNYSLDLCLGMCLDSTVEKQ 182 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + + L+G + ++ +++ MN+A+ K ++E+A +RD +++++++ N + Sbjct: 183 YSTILDKIINLLNGTDKSILKEMEYTMNKASDKFNFENAAKYRDYISSVNYLLNRANICK 242 Query: 240 NRMDCFSLYHNKNLACIQTCFF--HFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 ++ ++L FF + + ++L+ + + ++ +K Sbjct: 243 FVKKNKNIAFLEHLEHNNIKFFLIKGNKVIFSKKYYLENIDFQKLKSSVKSNILFYFNNK 302 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA 348 ++I L +E + S + S+ + V + + ++ A Sbjct: 303 AIKKSIELHKEKMDESQIIYSYLRSKSINRTYVVISSKWLNNLNDTSIDKA 353 >gi|153954277|ref|YP_001395042.1| UvrABC-related protein, protein C [Clostridium kluyveri DSM 555] gi|146347158|gb|EDK33694.1| UvrABC-related protein, protein C [Clostridium kluyveri DSM 555] Length = 361 Score = 200 bits (509), Expect = 5e-49, Method: Composition-based stats. Identities = 75/351 (21%), Positives = 165/351 (47%), Gaps = 9/351 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 +++P PGVY M D ++YVGK+ NL+ RI SY S +HT ++ ++ + + + Sbjct: 6 KIKELPSSPGVYLMKDSLNSIIYVGKSKNLKNRIASYFQNSKSHTPKVLKLVKNLRDFDY 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD-SSTIQG 119 +T TE EA +LE +IK++KP +N +++ +++ YI I K P + + Sbjct: 66 ILTDTEFEAFMLECKLIKQIKPIYNKQMKNTQAYCYIKI--NQKYPDIKISNEYVKNDGN 123 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 YFGP+ S + VE+ I ++ + + F+ + CL + + C G C ++ Sbjct: 124 LYFGPYPSRNTVERGIQGIKECCKIF--CSNNFKKASY-CLNYSLDLCLGMCLDSTVEKQ 180 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 Y + + L+G + ++ +++ MN+A+ K ++E+A +RD +++++++ N + Sbjct: 181 YSTILDKIINLLNGTDKSILKEMEYTMNKASDKFNFENAAKYRDYISSVNYLLNRANICK 240 Query: 240 NRMDCFSLYHNKNLACIQTCFF--HFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 ++ ++L FF + + ++L+ + + ++ +K Sbjct: 241 FVKKNKNIAFLEHLEHNNIKFFLIKGNKVIFSKKYYLENIDFQKLKSSVKSNILFYFNNK 300 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA 348 ++I L +E + S + S+ + V + + ++ A Sbjct: 301 AIKKSIELHKEKMDESQIIYSYLRSKSINRTYVVISSKWLNNLNDTSIDKA 351 >gi|167957060|ref|ZP_02544134.1| excinuclease ABC subunit C [candidate division TM7 single-cell isolate TM7c] Length = 534 Score = 199 bits (507), Expect = 8e-49, Method: Composition-based stats. Identities = 63/236 (26%), Positives = 115/236 (48%), Gaps = 8/236 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRF 60 + +P PGVY +G ++Y+GKA L+ R++ Y S+ + ++++I + + Sbjct: 8 KLKTLPRSPGVYFHKSASGEIIYIGKAAVLKNRVRQYFQSSKDFDAKTRALVAEIYDTDW 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T +E++AL LE+ MIKR PR+NILLRDDKS ++ I K + P + R+ + Sbjct: 68 IETESEIDALFLESEMIKRYMPRYNILLRDDKSQTFVRIDMKSEWPTVSFTRNPADDGAE 127 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 Y GPF + A++K++ L+R F + + + L + G Y Sbjct: 128 YIGPFYNGFALKKSLRYLRRVFPYLTRQRRPGQSKLDEDLGLSPRLSDGSV-------AY 180 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + + ++ G + ++ R+M A D+E A R++L+A+ +Q Sbjct: 181 KASLRKLISYIKGNRKAIAAELERDMKTAAGLHDFERAADLRNKLSAMRELQRRVC 236 Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats. Identities = 93/454 (20%), Positives = 152/454 (33%), Gaps = 84/454 (18%) Query: 217 SAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT 276 + D + + + + + ++N + T Sbjct: 101 QTFVRIDMKSEWPTVSFTRNPADDGAEYIGPFYNGFALKKSLRYLRRVFPYLTRQRRPGQ 160 Query: 277 DSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGE 336 + + K ++ + ++ + + Sbjct: 161 SKLDEDLGLSPRLSDGSVAYKASLRKLISYIKGNRKAIAAELERDMKTAAGLHDFERAAD 220 Query: 337 KRK-IIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSA 395 R + + K +IS L D K L +IP RIE YD SH+ G Sbjct: 221 LRNKLSAMRELQRRVCFGDKEFLDISKDKALADLAKLLGLKNIPVRIEGYDISHMSGRQV 280 Query: 396 VGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK 455 V MVV + +YRKF + + DD + + RR S + Sbjct: 281 VSSMVVFTNGASDRAEYRKFKVSEKN----DDTGNIYQTIFRRLS--------------E 322 Query: 456 QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPK----RSAG----- 506 + PD++++DGGKGQL+AA + V + I+SIAK + G Sbjct: 323 RHLKGWGRPDLLLIDGGKGQLAAAIRARDERGVA--VPIVSIAKREEELLVHKTGSQIDI 380 Query: 507 -----------MEKFFVKKGEALVLN---------MRDPIL------------------- 527 + + GE V+N L Sbjct: 381 AFIEQFRSQLRTDVMVYEDGEVYVVNLHPGQRNAGSHSKNLRAADDSLVMSVQDQVSNSD 440 Query: 528 ------------YFIQRLRDEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQS 574 QR+RDE+HRFA++ H +RK A S LD+I+GIGP KR LL+ Sbjct: 441 NINTLFASTDIIKLFQRIRDESHRFAVSYHSTLKRKNATKSILDDIHGIGPKTKRKLLRH 500 Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 FG++ I ++S E ++ I + +A KI N Sbjct: 501 FGSLGNIKKASIEDISKIT--NDSLAKKIKNSLR 532 >gi|161986630|ref|YP_445565.2| hypothetical protein SRU_1441 [Salinibacter ruber DSM 13855] Length = 563 Score = 199 bits (507), Expect = 9e-49, Method: Composition-based stats. Identities = 80/345 (23%), Positives = 138/345 (40%), Gaps = 9/345 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVT 63 +P+ PGVY M + +G LY+GKA L R++S+ + + R M+ ++ ++ +T T Sbjct: 211 DVPDEPGVYVMKNRSGTPLYIGKAKRLPDRLRSHFTAVESSGARKRKMLQKVRSVDWTTT 270 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE+EA+LLE+ IK KPR+N R + P+I + H+ P + R Y+G Sbjct: 271 ATELEAILLESRRIKAEKPRYNRAQRRYYNRPFIRLDTAHEYPTVSWTRRLEADGAEYYG 330 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P + + E ++ + R F LR C D R CL + RC+ PC + + E Y Sbjct: 331 PVRNTEQAEMVVDVVGRFFQLRECDDERLHLGQR-CLYADMDRCTVPCETKDA-EAYATV 388 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD 243 V + FL+G + ++ + M +A+ ++E A RD L L I + Sbjct: 389 VERVRAFLTGQDQSVLGTMRDRMQRASDNLNFEKAAELRDTLEQLERILEKQRVAAAPVR 448 Query: 244 CFSLYHNKNLAC----IQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 + + FG+ + E L R + + Sbjct: 449 QHNAALVHQAPDRAGRVDVMLVRFGRFEESIACAAPPSPEE--RDSLLERCRSVFDVEAD 506 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344 P +A E LL + + + + + Sbjct: 507 PPETFSKRDATEIRLLSHWVYAHRDELTAVRWTPRTSPADLADAI 551 >gi|84496154|ref|ZP_00995008.1| hypothetical protein JNB_01505 [Janibacter sp. HTCC2649] gi|84382922|gb|EAP98803.1| hypothetical protein JNB_01505 [Janibacter sp. HTCC2649] Length = 572 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 112/229 (48%), Gaps = 2/229 (0%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ +PE PGVY D GRVLYVG + +++ R++SY ++ R++ M+ ++ V Sbjct: 214 ADGLPEAPGVYLFKDGQGRVLYVGTSVSIRTRVRSYFTASEKRRRMSEMVRIAESVTPIV 273 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +EA + E +IK KPR+N R + ++ +T P L RD + Y Sbjct: 274 CATPLEAEVRELRLIKEHKPRYNRKSRHPERSWWVKLTV-EPFPRLSIVRDVADDDTRYI 332 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTR-PCLLFQIKRCSGPCTGEISSEKYM 181 GPFAS + + + ++ LR C + + + R C L + RC PCTG S E Y Sbjct: 333 GPFASRGSADDAVAAVHEVLPLRQCLERLSATKPRSACALADMGRCGAPCTGAQSVEDYA 392 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH 230 V EA L+G + M+ +E +E A I RDR+ +L Sbjct: 393 AVVAEAVALLAGDASSAVSTWRERMDHLAEQERFEDAGIVRDRMLSLVR 441 >gi|83757883|gb|ABC45996.1| exonuclease family [Salinibacter ruber DSM 13855] Length = 538 Score = 199 bits (505), Expect = 1e-48, Method: Composition-based stats. Identities = 80/345 (23%), Positives = 138/345 (40%), Gaps = 9/345 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVT 63 +P+ PGVY M + +G LY+GKA L R++S+ + + R M+ ++ ++ +T T Sbjct: 186 DVPDEPGVYVMKNRSGTPLYIGKAKRLPDRLRSHFTAVESSGARKRKMLQKVRSVDWTTT 245 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE+EA+LLE+ IK KPR+N R + P+I + H+ P + R Y+G Sbjct: 246 ATELEAILLESRRIKAEKPRYNRAQRRYYNRPFIRLDTAHEYPTVSWTRRLEADGAEYYG 305 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P + + E ++ + R F LR C D R CL + RC+ PC + + E Y Sbjct: 306 PVRNTEQAEMVVDVVGRFFQLRECDDERLHLGQR-CLYADMDRCTVPCETKDA-EAYATV 363 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD 243 V + FL+G + ++ + M +A+ ++E A RD L L I + Sbjct: 364 VERVRAFLTGQDQSVLGTMRDRMQRASDNLNFEKAAELRDTLEQLERILEKQRVAAAPVR 423 Query: 244 CFSLYHNKNLAC----IQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 + + FG+ + E L R + + Sbjct: 424 QHNAALVHQAPDRAGRVDVMLVRFGRFEESIACAAPPSPEE--RDSLLERCRSVFDVEAD 481 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344 P +A E LL + + + + + Sbjct: 482 PPETFSKRDATEIRLLSHWVYAHRDELTAVRWTPRTSPADLADAI 526 >gi|37521011|ref|NP_924388.1| excinuclease ABC subunit C [Gloeobacter violaceus PCC 7421] gi|35212007|dbj|BAC89383.1| excinuclease ABC subunit C [Gloeobacter violaceus PCC 7421] Length = 370 Score = 199 bits (505), Expect = 1e-48, Method: Composition-based stats. Identities = 79/336 (23%), Positives = 145/336 (43%), Gaps = 10/336 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFT 61 E +P+ PGVY+ +D GR+LY+GK+ +L+ R++SY+ H+ + + + + Sbjct: 12 LEDLPDAPGVYRFVDCDGRLLYIGKSVHLRTRVRSYLRRDGGHSRQTERLKFEAQAVEVL 71 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 T +E+ ALLLE +I+ P FN + + +P++ ++ + P L+ R + Y Sbjct: 72 CTGSELAALLLEGRLIREYLPPFNQAQKRYRQYPFLRLSVQEDYPRLHLTRVLAGDGAEY 131 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 +GP++ V + L + LR+C D F CLL Q+ +C GPC +Y Sbjct: 132 YGPYSQARFVSWMADLLSASLGLRTCRD--FSAIYHGCLLDQLGKCLGPCRTGALVAQYR 189 Query: 182 EFVHEAKKFLSGGNH--NLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 E V + L G + + R M A +ED+E A RDR AL++ H + Sbjct: 190 ERVERLRALLRGEDTGSGIIVDFERQMLNAAQREDFEQAARWRDRRQALANFVTHQGHLR 249 Query: 240 NRMDCFSLYHNKNL----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295 R+ ++ +Q + G+ +F E A++ + Sbjct: 250 ERVSLDAVAVYPGAPRSPTSVQLFWIRQGKLTLQQSFAGDLPQERLRAELAHTLAGHYSE 309 Query: 296 DKPC-PENILLSEEAEETSLLEISFFKQYGYKVKIT 330 P P L ++ +E ++ ++ + Sbjct: 310 GLPPAPLFALPQQDLDEVQMVSGWLYRHRTDDTLLW 345 >gi|39938919|ref|NP_950685.1| nuclease subunit of the excinuclease complex [Onion yellows phytoplasma OY-M] gi|39722028|dbj|BAD04518.1| nuclease subunit of the excinuclease complex [Onion yellows phytoplasma OY-M] Length = 461 Score = 199 bits (505), Expect = 1e-48, Method: Composition-based stats. Identities = 116/489 (23%), Positives = 200/489 (40%), Gaps = 40/489 (8%) Query: 51 MISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYK 110 +I + + + +T E EAL+LEAN+IK+ P++N L DDK++PYI IT K K P L Sbjct: 2 LIEETQDFFYIITNNEQEALILEANLIKKHTPKYNFKLLDDKTYPYIEIT-KEKHPQLKI 60 Query: 111 HRDSSTIQGS-YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSG 169 R G FGP+ ++ ++ + L +PCL F I +C G Sbjct: 61 SRFKQIPPGKIIFGPYPNLKNTKE----TLKLLHLLYPLRRCPLASKKPCLHFHINQCLG 116 Query: 170 PCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALS 229 C + Y + KFL G ++ +K+ M A+ K YE A +RD + A+ Sbjct: 117 AC--AGKTINYKPNIEAITKFLKGNIKDILKKLHHLMQTASEKMFYEKAQEYRDIIYAIK 174 Query: 230 HIQNHN---DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQIL 286 + D F+ N++ IQ G + + + Sbjct: 175 QTTKKQLIINQKLKNCDIFAYSFNQDQISIQILKMRQGNIVDSYHSVFSYVGFV--WENI 232 Query: 287 SYFLRQFYTDKPCPENILLSEEAEETSLLEISFFK---QYGYKVKITVPKQGEKRKIIEQ 343 +L +Y P+ I+ + +ET L ++ + + + K+ + +G+K+K+ Sbjct: 233 LTYLNCYYQKNLKPDIIITGKSQDETILQQMITNQTLLEQILQTKVNIAHKGDKKKLYLL 292 Query: 344 ALINAHRSHTQKLSTEISHQMILKDF--TKKFALPHIPKRIEIYDNSHIMGCSAVGCMVV 401 AL NA S +++ KRI+++DNS + G + V +V Sbjct: 293 ALKNAQNDLANNNLIYQSKDQKIQESLDKLAIIFNKDIKRIDVFDNSQLFGQAFVAARIV 352 Query: 402 VGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFP 461 F K YR F++ ++ L R +++ + + + Sbjct: 353 FNHFEFDKKLYRTFHIKGKF---PNEYQAFEETLTRCYNKDKEVKNDS------------ 397 Query: 462 SWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLN 521 PD++++DG GQL +Q LKKL E I + ++ K K V E L+L Sbjct: 398 --PDLILVDGSLGQLRQSQKTLKKLGYE--IPLGALQKNNKHQL---THLVTLQEKLMLE 450 Query: 522 MRDPILYFI 530 + YF+ Sbjct: 451 QSPNLFYFL 459 >gi|126031198|pdb|2NRT|A Chain A, Crystal Structure Of The C-Terminal Half Of Uvrc gi|126031199|pdb|2NRV|A Chain A, Crystal Structure Of The C-Terminal Half Of Uvrc gi|126031200|pdb|2NRV|B Chain B, Crystal Structure Of The C-Terminal Half Of Uvrc gi|126031201|pdb|2NRW|A Chain A, Crystal Structure Of The C Terminal Half Of Uvrc gi|126031202|pdb|2NRX|A Chain A, Crystal Structure Of The C-Terminal Half Of Uvrc, In The Presence Of Sulfate Molecules gi|126031203|pdb|2NRX|B Chain B, Crystal Structure Of The C-Terminal Half Of Uvrc, In The Presence Of Sulfate Molecules gi|126031204|pdb|2NRZ|A Chain A, Crystal Structure Of The C-Terminal Half Of Uvrc Bound To Its Catalytic Divalent Cation gi|126031205|pdb|2NRZ|B Chain B, Crystal Structure Of The C-Terminal Half Of Uvrc Bound To Its Catalytic Divalent Cation Length = 220 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 72/245 (29%), Positives = 125/245 (51%), Gaps = 33/245 (13%) Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423 L++ K + P RIE D SH+ G V +VV + K YR++ + + Sbjct: 7 EALEELMKLLNMKDFPYRIEGIDISHLQGKYTVASLVVFEDGFPKKGDYRRYKIEQDH-- 64 Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD +R V++RR+S+ P+++ +DGG GQ++AA L Sbjct: 65 -PDDYESIRTVVKRRYSK-------------------HPLPNLLFVDGGIGQVNAAIEAL 104 Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543 K++ + ++ +AK + V + + L P+L + ++RDE HRFA++ Sbjct: 105 KEIGKDC--PVVGLAKKEET-------VVFENREIHLPHDHPVLRLLVQIRDETHRFAVS 155 Query: 544 THRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 HRKRR+K + S LD + GIGP+RK+ L++ FG+++ I +S E +A + G S +IA + Sbjct: 156 YHRKRREKESLRSVLDNVPGIGPIRKKKLIEHFGSLENIRSASLEEIARVIG-STEIARR 214 Query: 603 IYNHF 607 + + Sbjct: 215 VLDIL 219 >gi|495213|gb|AAA65232.1| DNA repair enzyme [Pseudomonas syringae] Length = 150 Score = 198 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 56/126 (44%), Positives = 81/126 (64%), Gaps = 1/126 (0%) Query: 21 RVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRL 80 +LYVGKA NL+KR+ SY H + ++S+I I T+T E EALLLE +IK Sbjct: 26 TLLYVGKAKNLKKRLASYFRKTGHAPKTGALVSRIAQIETTITGNETEALLLEQTLIKEW 85 Query: 81 KPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQR 140 +P +NILLRDDKS+PY+ ++D P L HR + +G YFGP+ S A+ ++++ LQ+ Sbjct: 86 RPPYNILLRDDKSYPYVFLSDN-AFPRLSIHRGTKKAKGRYFGPYPSAGAIRESLSLLQK 144 Query: 141 TFFLRS 146 TF +R Sbjct: 145 TFQVRQ 150 >gi|225155774|ref|ZP_03724262.1| excinuclease ABC C subunit domain protein [Opitutaceae bacterium TAV2] gi|224803568|gb|EEG21803.1| excinuclease ABC C subunit domain protein [Opitutaceae bacterium TAV2] Length = 540 Score = 198 bits (502), Expect = 4e-48, Method: Composition-based stats. Identities = 69/250 (27%), Positives = 116/250 (46%), Gaps = 23/250 (9%) Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419 + ++ + LP P+ +E +D SHI G V MV + KN YR+F + Sbjct: 296 ATDTAAMRALGEALGLPAPPRTLECFDISHISGTFVVASMVHFADGRPDKNNYRRFQIKS 355 Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479 DD M V+ RR+ +L + + +PD++++DGG+GQ++AA Sbjct: 356 --FIGNDDFRAMEEVVGRRYRRLREEGK--------------PFPDLIVIDGGRGQIAAA 399 Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539 ++ +I +AK + F + L L + P L +QRLRDEAHR Sbjct: 400 LKAFAIIDAP-PPPLIGLAKKHET-----IIFPDERAPLNLPLTHPALSLLQRLRDEAHR 453 Query: 540 FAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 FA T + R K S LD+ +G+G +R+ LL FG + + ++ + + G K Sbjct: 454 FANTYNADLRSRKIRESVLDDFDGLGEVRRAALLAHFGDIDRLRAATEAQIREVSGFGPK 513 Query: 599 IACKIYNHFH 608 +A +++ H Sbjct: 514 LAAELHAWLH 523 Score = 187 bits (475), Expect = 5e-45, Method: Composition-based stats. Identities = 52/170 (30%), Positives = 81/170 (47%), Gaps = 5/170 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN----HTHRITHMISQINN 57 +P+ PGVY M D GR++YVGKA +L+KR+ SY + +I +I I + Sbjct: 12 KVRHLPDKPGVYLMRDRLGRIIYVGKAKSLKKRVSSYFMPSRAARELHPKIRALIQLIAD 71 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117 +E EALLLE +IK +P++N DDK F + + +P R Sbjct: 72 FDTIEVKSEPEALLLEGRLIKEWRPKYNTDFTDDKRFLLVRVDPMEPLPKFRLTRIRKDT 131 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKR 166 + YFGPFA + KT+ ++R F + + R R L +++ Sbjct: 132 RSRYFGPFAHSGLLRKTLAQMRRQFGILLGDATPRRLDDGRWQLYDDVRQ 181 >gi|156308349|ref|XP_001617653.1| hypothetical protein NEMVEDRAFT_v1g225912 [Nematostella vectensis] gi|156195035|gb|EDO25553.1| predicted protein [Nematostella vectensis] Length = 201 Score = 197 bits (500), Expect = 5e-48, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 107/223 (47%), Gaps = 24/223 (10%) Query: 390 IMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL 449 + G V VV K +YR +N+ V DD A M V+ RR+ +L+ E L Sbjct: 1 MQGTHPVAACVVFKNGKPSKKEYRHYNIKT--VVGPDDFASMEEVVFRRYKRLLSENEPL 58 Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509 P ++++DGGKGQLS+A L L + +I II IAK + E Sbjct: 59 --------------PQLIVIDGGKGQLSSALKSLDVLGLRGKIAIIGIAKRLE-----EI 99 Query: 510 FFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRK 568 ++ L L+ + L IQ+LR+EAHRF IT HR +R K+ S L++I IG Sbjct: 100 YYPGDAVPLYLDKKSETLKIIQQLRNEAHRFGITFHRNKRSKSAIQSELEQIPTIGKQTI 159 Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 LL+ F + K + ++S E L + I A I+ +F+ Sbjct: 160 TTLLRKFKSAKRVKKASFEELEA--EIGHARANIIFKYFNPKE 200 >gi|260910774|ref|ZP_05917426.1| excision endonuclease subunit UvrC [Prevotella sp. oral taxon 472 str. F0295] gi|260635096|gb|EEX53134.1| excision endonuclease subunit UvrC [Prevotella sp. oral taxon 472 str. F0295] Length = 149 Score = 196 bits (499), Expect = 7e-48, Method: Composition-based stats. Identities = 49/124 (39%), Positives = 79/124 (63%), Gaps = 1/124 (0%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PG YQ D ++YVGKA +L+ R+ SY H + ++S+I +I +TV Sbjct: 19 SLPEKPGSYQFYDEQHTIIYVGKAKSLKSRVSSYFHKEVDRFKTKVLVSKIFDISYTVVN 78 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE +ALLLE ++IK+ PR+N+LL+D K++P I +T+ P ++K R + G+Y+GP Sbjct: 79 TEEDALLLENSLIKKYNPRYNVLLKDGKTYPSICVTN-ELYPRIFKTRTINKRLGTYYGP 137 Query: 125 FASV 128 ++ V Sbjct: 138 YSHV 141 >gi|322807518|emb|CBZ05093.1| nuclease subunit of the excinuclease complex [Clostridium botulinum H04402 065] Length = 365 Score = 196 bits (499), Expect = 7e-48, Method: Composition-based stats. Identities = 81/348 (23%), Positives = 153/348 (43%), Gaps = 7/348 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRF 60 ++ +P+ PG+Y M D ++YVGK+ NL+KR+ SY +N+ T ++ ++ I + ++ Sbjct: 6 KAKLLPQSPGIYIMRDSLSNIIYVGKSKNLRKRVYSYFIKSNNITSKVEKLVKNIKDFQY 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE+EALLLE N IK +KP++N L+++ + + YI I + K P + + Sbjct: 66 ICTDTELEALLLECNFIKHIKPQYNRLMKNHERYVYIQINIEDKYPIIKVVSEIIDDDSL 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 Y+GPF S + + K I L L C + + C+ + I +C GPC ISS++Y Sbjct: 126 YYGPFISYNRILKFIEGLNEILPLIKCNN--YLKHKSTCINYAIGKCEGPCIESISSKQY 183 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN--HNDSI 238 ++V + F G + + + M + + ++E A I ++ + S + + Sbjct: 184 KKYVDKVISFFHGEKDLIIS-LEKAMIEYSQTLEFEKAKIFKEYIDVFSSVFQEYKHIIP 242 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 N + F + + F + T + S+ + +FY Sbjct: 243 LNNYNKFIIIDATRKNIFKVIFINNHNIEYIDTITIDNISKENLEEYFKNIYLRFYLINH 302 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 ++ + + E + I F K I G+ + + Sbjct: 303 NNKSKNIVNK-EFIDYVHIIFSYINMKKEDIVYSNIGQDDNVCDLGEK 349 >gi|269127278|ref|YP_003300648.1| DNA polymerase III subunit epsilon [Thermomonospora curvata DSM 43183] gi|268312236|gb|ACY98610.1| DNA polymerase III, epsilon subunit [Thermomonospora curvata DSM 43183] Length = 605 Score = 196 bits (499), Expect = 7e-48, Method: Composition-based stats. Identities = 73/237 (30%), Positives = 108/237 (45%), Gaps = 5/237 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ MP PGVY D G VLYVGK+ +L+ R++SY ++ RI M+ +R V Sbjct: 238 ADGMPSAPGVYLFEDARGEVLYVGKSNDLRARVRSYFTASETRRRIREMVGLAERVRPIV 297 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +EA + E +I KPR+N + + ++ +T P L RD Q Y Sbjct: 298 CATALEAEVRELRLIAEHKPRYNRRSKFPERTLWLKLTVGETFPRLSIVRDCRDEQAVYL 357 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRH-----RTRPCLLFQIKRCSGPCTGEISS 177 GPF S+ E+ +L LR C + R R C L QI RC PC G S+ Sbjct: 358 GPFGSLRQAEEARAALHEAVPLRQCTQRLTPRLIAHGRARTCALGQIGRCGAPCEGRQSA 417 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234 + Y+ V A+ + G + +++ ++ YE A RDRLAA Sbjct: 418 DVYLRHVETARSIMEGDVRPVVAAARVRIDRLAVQLRYEEAAAQRDRLAAFVRAAAR 474 >gi|311032789|ref|ZP_07710879.1| Excinuclease ABC C subunit domain protein [Bacillus sp. m3-13] Length = 354 Score = 196 bits (499), Expect = 8e-48, Method: Composition-based stats. Identities = 64/239 (26%), Positives = 117/239 (48%), Gaps = 5/239 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 +++P PGVY M D G+V+YVGK+ L++R++SY S+ H++++ ++ I ++ Sbjct: 6 KIKEIPATPGVYLMKDSLGQVIYVGKSKRLRQRVQSYFRESSAHSNKVRKLVKHIRDLEI 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE EALLLE +I+ ++P++N ++ ++F Y+ I K+ L Sbjct: 66 IETDTEFEALLLEWQLIQEIRPQYNRQMKTPEAFLYLTIRKVGKLYRLRPTTQPLRGGDG 125 Query: 121 Y-FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 + FGP+ S + ++Q + S PCL + + C G C G + + Sbjct: 126 WSFGPYTS---RKTVSFAIQGLKDVYRLNCSNPAINGSPCLNYSLGLCRGICLGGKAVGE 182 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y V + L+G + L E + + M Q D+E A +R+ + +L + D + Sbjct: 183 YNAIVEQLIALLNGESAELLEDMQQEMGQLAADLDFERAARYRNCIQSLQALLQKEDVM 241 >gi|71902387|ref|ZP_00684351.1| Excinuclease ABC, C subunit, N-terminal [Xylella fastidiosa Ann-1] gi|71727875|gb|EAO30112.1| Excinuclease ABC, C subunit, N-terminal [Xylella fastidiosa Ann-1] Length = 147 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 56/126 (44%), Positives = 78/126 (61%), Gaps = 1/126 (0%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY+M +LYVGKA L+KR+ SY + R+T M++Q+ + T+T Sbjct: 23 HLSTAPGVYRMYAADDTLLYVGKAGALRKRVASYFNGTPKNTRLTAMLAQVVRMDVTITR 82 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 E EALLLE +IK L PR+N+LLRDDKS+PY+L+T + P + HR + G YFGP Sbjct: 83 NEAEALLLENQLIKSLAPRYNVLLRDDKSYPYVLLT-REVWPRIALHRGPQIVPGRYFGP 141 Query: 125 FASVDA 130 + V A Sbjct: 142 YPGVTA 147 >gi|296269280|ref|YP_003651912.1| DNA polymerase III subunit epsilon [Thermobispora bispora DSM 43833] gi|296092067|gb|ADG88019.1| DNA polymerase III, epsilon subunit [Thermobispora bispora DSM 43833] Length = 574 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 72/235 (30%), Positives = 108/235 (45%), Gaps = 2/235 (0%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 +E +P PGVY D G LYVGK+ NL+ R++SY ++ RI MI +R V Sbjct: 214 AEGVPAAPGVYVFEDAKGEALYVGKSTNLRNRVRSYFTASEARPRIREMIGIAERVRTIV 273 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +EA + E +I KPR+N R + ++ +T P L R+ G+Y Sbjct: 274 CATALEAEIRELRLIAATKPRYNRRSRFPERAVWLKLT-DEPFPRLSIVREVKDDGGAYL 332 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP-CLLFQIKRCSGPCTGEISSEKYM 181 GPF S A + +L T LR C + + RP C L +I +C PC G S E+Y Sbjct: 333 GPFGSARAADDARTALHETLPLRRCTERLGPRARRPACALAEIGKCGAPCEGRESREEYA 392 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 A++ + + + M + ++ +E A + RDRLAA Sbjct: 393 RHAALARRAMEQDAGMVFSAMEARMRRLADQQRFEEAAVERDRLAAFIRAAARMQ 447 >gi|187735731|ref|YP_001877843.1| excinuclease ABC C subunit domain protein [Akkermansia muciniphila ATCC BAA-835] gi|187425783|gb|ACD05062.1| excinuclease ABC C subunit domain protein [Akkermansia muciniphila ATCC BAA-835] Length = 498 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 103/224 (45%), Gaps = 5/224 (2%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNN---HTHRITHMISQINNIRFTVTCTEVEALL 71 M D G +YVGKA +L +R+ +Y H+ +I+ I + + T + EA L Sbjct: 1 MKDARGNTIYVGKAKDLHRRLGNYFSPTGATLSNHKTRALINAIASFDYFETRNDQEAFL 60 Query: 72 LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAV 131 LE+ +IK+ +P +NI ++DDK +P + I K+P R YFGPF A+ Sbjct: 61 LESKLIKQYRPHYNIQMKDDKRYPLLKIPKGEKLPRFQLARVRKDDGARYFGPFVHSQAL 120 Query: 132 EKTINSLQRTFFLRSCA-DSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKF 190 T L R F LR+C + H R C I+ CS PC G IS Y +A + Sbjct: 121 YATQEWLNRHFRLRTCKTKNPGIHDFRHCHADVIRNCSAPCIGRISINDYNRNFDQAVRL 180 Query: 191 LSGGNHNLK-EKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 L G +++ M +A K D+E A RD L + Sbjct: 181 LEGTGRKSTLDELTGEMMEAADKLDFERAAYLRDIRDNLVKVLE 224 Score = 191 bits (485), Expect = 3e-46, Method: Composition-based stats. Identities = 77/277 (27%), Positives = 132/277 (47%), Gaps = 21/277 (7%) Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409 R T L + + +K+ L P +E +D S++ V MV Sbjct: 230 RKRTPDLPGTVHPEEDMKELGVALGLESPPTIMECFDISNVSSNHIVASMVRFTNGRPDN 289 Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP------------KKQE 457 YR++ + V Q+D A M V+ RR+S+++ + + + Sbjct: 290 KAYRRYRIRT--VDGQNDFASMSEVIRRRYSRILAESDAVASRQADMTLYQWLKKLSAEG 347 Query: 458 YSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA 517 + PD+V++DGGKGQLS+A L+ + + + I+ +AK + E FF + + Sbjct: 348 KAPIKVPDLVVVDGGKGQLSSALADLEAIGL-GDMPIVGLAKQRE-----EIFFPHQSQP 401 Query: 518 LVLNMRDPILYFIQRLRDEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFG 576 L L L +QR+RDEAHRFA + RK+ S LD+ G+ +KRLLL+ F Sbjct: 402 LCLPHSTGALKLMQRIRDEAHRFANGYNELLYRKRMRESALDDAPGMSASKKRLLLEKFK 461 Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 +V I ++ P ++A+I GIS+ A + N+ + +++ Sbjct: 462 SVTAIKKADPASIAAIRGISETWARTLLNYLNSSSNS 498 >gi|315282011|ref|ZP_07870517.1| excinuclease ABC subunit C [Listeria marthii FSL S4-120] gi|313614338|gb|EFR87976.1| excinuclease ABC subunit C [Listeria marthii FSL S4-120] Length = 181 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 64/197 (32%), Positives = 102/197 (51%), Gaps = 23/197 (11%) Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483 DD A MR V+ RR+ +++K PD++++DGGKGQ+ +A+ VL Sbjct: 1 GPDDYATMREVIRRRYWRVLKEG--------------LPMPDLILIDGGKGQIDSAKDVL 46 Query: 484 -KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 +L ++ I + +AK K F E + L Y +QR++DE HRFAI Sbjct: 47 TNELGLD--IPVAGLAKDDKHRTSQ-LLFGDPLEIIPLERNSQEFYLLQRMQDEVHRFAI 103 Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 T HR+ R K S LD I G+GP RK+ LL+ FG++K + +S E + G+ +A Sbjct: 104 TFHRQLRSKTGFQSILDGIPGVGPGRKKKLLKHFGSMKKLKEASIEEIKEA-GVPLNVAE 162 Query: 602 KIYNH---FHKNTSHTP 615 +++ H F++ +T Sbjct: 163 EVHKHITAFNEKAKNTE 179 >gi|302874100|ref|YP_003842733.1| Excinuclease ABC C subunit domain-containing protein [Clostridium cellulovorans 743B] gi|307689642|ref|ZP_07632088.1| Excinuclease ABC C subunit domain-containing protein [Clostridium cellulovorans 743B] gi|302576957|gb|ADL50969.1| Excinuclease ABC C subunit domain protein [Clostridium cellulovorans 743B] Length = 364 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 71/328 (21%), Positives = 150/328 (45%), Gaps = 11/328 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60 + +P PGVY M D ++Y+GK+ NL+ R+ SY S NH+ ++ ++ + + + Sbjct: 6 KIKGLPSVPGVYLMKDSLENIIYIGKSKNLKNRVSSYFQNSKNHSSKVIRLVQNLKDFDY 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG- 119 +T TE EA +LE +IK +KP +N L++ S+ YI + + ++ Sbjct: 66 IITDTEFEAFILECKLIKEIKPPYNRLMKSPMSYSYIQVALGDNCLDISLKSEAVKDDNC 125 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 YFGP+ S + VE+ I ++ + A + + C+ + +K C G C ++S + Sbjct: 126 IYFGPYTSRNIVERGILGIKNHLKI---ACTNNSRKGSACINYSLKLCMGMCMNKVSQNQ 182 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237 Y+E ++ + L+G + ++ E++ MN A D+E+A +RD ++++++I + ++ Sbjct: 183 YIEIYNKILQLLNGSDKSIIEEMNLVMNNAAESFDFETAAKYRDYISSINYILDKKNTVE 242 Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 N+ + + + + + + F L + + ++ ++ Sbjct: 243 FMNKNRNIAFIEYLDDSFAKIFLIKGNRIVFSEKFNLNHCHSYELKATIKNNILFYFKEE 302 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGY 325 E E + +L E Y Sbjct: 303 LLQE----PWEINKENLDEAQIIHSYIK 326 >gi|117928176|ref|YP_872727.1| hypothetical protein Acel_0968 [Acidothermus cellulolyticus 11B] gi|117648639|gb|ABK52741.1| DNA polymerase III, epsilon subunit [Acidothermus cellulolyticus 11B] Length = 566 Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 108/233 (46%), Gaps = 2/233 (0%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 +E++P PGVY D GRVLYVGKA +L++R++SY + RI M+ ++ V Sbjct: 220 AERLPHAPGVYLFRDRQGRVLYVGKAKDLRQRVRSYFTAAETRGRIVDMLRVAEDVTPIV 279 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 TE+EA + E +I KP +N + + ++ +T + P L +Y Sbjct: 280 CATELEAEIREVRLIAEHKPAYNRRSKFPERTWWVKLT-DERFPRLAVVHTVRNDAATYL 338 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 GPF ++ + +LQ F +R C D R R PC F++ RC PCTG S + Y Sbjct: 339 GPFNVRESALLAVEALQDAFPIRRCPDRLGPRTRRPPCAWFELGRCGAPCTGAQSPDAYR 398 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234 V + ++ + R + + YE A+ RDRL A H Sbjct: 399 SVVAAVHRAMTSDPSEVVAAALRRITPLAAAQRYEEAVPIRDRLVAYLHAVGR 451 >gi|268316801|ref|YP_003290520.1| DNA polymerase III, epsilon subunit [Rhodothermus marinus DSM 4252] gi|262334335|gb|ACY48132.1| DNA polymerase III, epsilon subunit [Rhodothermus marinus DSM 4252] Length = 565 Score = 194 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 66/221 (29%), Positives = 107/221 (48%), Gaps = 8/221 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 ++PE PGVY D GR+LYVGKA NLQ R++ ++ + H R+ M+S+I I + VT Sbjct: 209 RLPEAPGVYLFRDEHGRLLYVGKARNLQARVRQHLTAVEAHPPRLRQMVSEIRQIEWHVT 268 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE+EALL E+ +IK+ +PR+N L R ++ P++ + P L Y+G Sbjct: 269 ATELEALLEESRLIKQHQPRYNRLQRRYRTRPFLRLALHETPPVLSLTPVLLDDGAEYYG 328 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P + + +LQ F L + C L + C+ C + E Sbjct: 329 PLPGRRQGRRALEALQEIFRLPRQNAHLVLMGR--CPLAGGELCTNACADGEA-----EA 381 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR 224 V ++ L GG + + M A + ++E+A +RD+ Sbjct: 382 VACVRRLLRGGCTHPLSWLETQMRAAAARLEFEAAARYRDQ 422 >gi|330885591|gb|EGH19740.1| excinuclease ABC subunit C [Pseudomonas syringae pv. glycinea str. race 4] Length = 138 Score = 194 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 60/139 (43%), Positives = 85/139 (61%), Gaps = 3/139 (2%) Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQR 532 GQ+S A+ VL +L V + I ++ +AKG R AG E ++ L P L+ IQ+ Sbjct: 1 GQMSMARDVLNELQVPDLI-LLGVAKGTTRKAGFETLYLNDAAHEFTLPGDSPALHLIQQ 59 Query: 533 LRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 +RDEAHRFAIT HR RR K S L+ + G+GP R+R LL+ FG ++ +SR+S + +A Sbjct: 60 IRDEAHRFAITGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAK 119 Query: 592 IEGISKKIACKIYNHFHKN 610 GISKK+A IY + H Sbjct: 120 APGISKKLAESIYANLHSE 138 >gi|284030730|ref|YP_003380661.1| DNA polymerase III subunit epsilon [Kribbella flavida DSM 17836] gi|283810023|gb|ADB31862.1| DNA polymerase III, epsilon subunit [Kribbella flavida DSM 17836] Length = 602 Score = 194 bits (492), Expect = 4e-47, Method: Composition-based stats. Identities = 74/264 (28%), Positives = 118/264 (44%), Gaps = 5/264 (1%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 +E +P PGVY D G VLYVGK+ +L+ R++SY ++ RI MI + +R Sbjct: 233 AESLPHAPGVYLFTDDRGEVLYVGKSKDLRTRVRSYFTASETRTRIGEMIGIASGVRGIE 292 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +EA + E +I KPR+N + + ++ +T P L + Y Sbjct: 293 CGTSLEAEVRELRLIAEHKPRYNRRSKFPERQHWLKVTV-EPFPRLSLVKQVRDDDAGYL 351 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRH-RTRPCLLFQIKRCSGPCTGEISSEKYM 181 GPF+S E+ + +L F +R C D + R R PC+L ++ RC PC G I + Y Sbjct: 352 GPFSSRKTAERAMAALHEAFPIRQCTDRMSRTPRMSPCVLAEMGRCVAPCDGRIDIDGYA 411 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH---IQNHNDSI 238 EFV + L + E + R ++ + E +E A +HRDRL A S+ Sbjct: 412 EFVAGLRTALVADPGPVVEALTRRIDLLSADERFEDAAVHRDRLGAFVRSSARMQRMASV 471 Query: 239 YNRMDCFSLYHNKNLACIQTCFFH 262 + + ++ Sbjct: 472 TGCAEICAARRTEDGGWELHVIRR 495 >gi|213615666|ref|ZP_03371492.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 155 Score = 193 bits (490), Expect = 8e-47, Method: Composition-based stats. Identities = 60/150 (40%), Positives = 93/150 (62%), Gaps = 5/150 (3%) Query: 460 FPSWPDVVILDGGKGQLSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKG 515 PDV+++DGGKGQL+ A+ V +L+V ++R ++ +AKG R AG+E F +G Sbjct: 1 ESKIPDVILIDGGKGQLAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEG 60 Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQS 574 E L P L+ IQ +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ Sbjct: 61 EGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKY 120 Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIY 604 G ++ + +S E +A + GIS+ +A KI+ Sbjct: 121 MGGLQGLRNASVEEIAKVPGISQGLAEKIF 150 >gi|317125104|ref|YP_004099216.1| DNA polymerase III subunit epsilon [Intrasporangium calvum DSM 43043] gi|315589192|gb|ADU48489.1| DNA polymerase III, epsilon subunit [Intrasporangium calvum DSM 43043] Length = 590 Score = 193 bits (490), Expect = 8e-47, Method: Composition-based stats. Identities = 62/265 (23%), Positives = 110/265 (41%), Gaps = 4/265 (1%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ +P PGVY D GRVLYVG + +++ R++SY + R+ M+ + + V Sbjct: 214 ADALPHAPGVYLFKDGDGRVLYVGTSRDIRSRVRSYFTAAEQRSRMADMVRLAHAVTPVV 273 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +EA + E +I +PRFN ++ + ++ +T + P L R G + Sbjct: 274 CQTPLEAQVRELRLIDEHQPRFNRRSKNARRQLWVKLT-SERFPRLSIVRQVRDEGGHHI 332 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF S + ++++ LR C + C L ++ RC PCTG S + Y Sbjct: 333 GPFRSRVTAQAAVDAVHEIVPLRQCTQRIT-GTESACALAELGRCGSPCTGAQSRDDYAR 391 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH--IQNHNDSIYN 240 V + SG +K+ + + +E +E A RDR L ++ + Sbjct: 392 VVADCAALFSGDARGGGDKLRSRLAELAAQERFEDAARVRDRFLHLVRGAARSQRLTPLM 451 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQ 265 + + G+ Sbjct: 452 QARELVAARRGESDGWEIVCIRQGR 476 >gi|187776876|ref|ZP_02993349.1| hypothetical protein CLOSPO_00415 [Clostridium sporogenes ATCC 15579] gi|187775535|gb|EDU39337.1| hypothetical protein CLOSPO_00415 [Clostridium sporogenes ATCC 15579] Length = 365 Score = 193 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 81/371 (21%), Positives = 154/371 (41%), Gaps = 15/371 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRF 60 ++ +P+ PG+Y M D ++YVGK+ NL+KR+ SY +N+ T ++ ++ I + ++ Sbjct: 6 KAKLLPQSPGIYIMRDSLSNIIYVGKSKNLRKRVYSYFIKSNNITSKVEKLVKNIKDFQY 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE+EALLLE IK +KP++N L+++ + + YI I + K P + + Sbjct: 66 ICTDTELEALLLECTFIKHIKPQYNRLMKNHERYVYIQINIEDKYPIIKVVSEIIDDDLL 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 Y+GPF S + + K I L L C + + C+ + I +C GPC ISS++Y Sbjct: 126 YYGPFISYNRILKFIEGLNEILPLIKCNN--YLKHKSTCINYAIGKCEGPCIESISSKQY 183 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN--HNDSI 238 ++V + F G + + + M + + ++E A I ++ + S + + Sbjct: 184 KKYVDKVISFFQGEKDLII-LLEKAMIEHSQTLEFEKAKIFKEYIDVFSSVFQEYKHIIP 242 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 N + F + + F + T + S+ + FY Sbjct: 243 LNNYNKFIIIDATRKNIFKVIFINNHNIEYIDTITIDNISKENLEEYFKNIYLGFY---- 298 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 L++ + +++ F K+ + + N + L Sbjct: 299 -----LINYNNKSKNIVNKEFIDYVHIIFSYINMKKEDIVYSNIEQDDNVCDLGEKSLKW 353 Query: 359 EISHQMILKDF 369 L F Sbjct: 354 SNYMIDKLNKF 364 >gi|261314539|ref|ZP_05953736.1| excinuclease ABC subunit C [Brucella pinnipedialis M163/99/10] gi|261303565|gb|EEY07062.1| excinuclease ABC subunit C [Brucella pinnipedialis M163/99/10] Length = 136 Score = 193 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 71/134 (52%), Positives = 93/134 (69%), Gaps = 1/134 (0%) Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 + A + +L ++ + + +T I IAKG R AG E+FF++ + L RDP+LYFIQRLRD Sbjct: 1 MGAVRQILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRD 60 Query: 536 EAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 EAHRFAI THR RRKK +PLDEI GIGP RKR LL FGT K +SR++ E L I+G Sbjct: 61 EAHRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDG 120 Query: 595 ISKKIACKIYNHFH 608 IS+ +A I++HF Sbjct: 121 ISEAMARAIHDHFR 134 >gi|256825435|ref|YP_003149395.1| hypothetical protein Ksed_16150 [Kytococcus sedentarius DSM 20547] gi|256688828|gb|ACV06630.1| exonuclease, DNA polymerase III, epsilon subunit family [Kytococcus sedentarius DSM 20547] Length = 584 Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 105/223 (47%), Gaps = 5/223 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PGVY+ LD AG VLYVG A N+++R+ Y ++ R+ M+ + V Sbjct: 223 DLPEAPGVYRFLDAAGEVLYVGTAVNIRRRVSQYFTASETRRRMGDMVRLAERVVPIVCP 282 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 T +EA + E +I +PR+N S PY+ +T P L R S ++ GP Sbjct: 283 TALEASVRELRLIAEHRPRYNRAGLKGASLPYVRLT-DEPFPRLSVVRAVSDDAATHIGP 341 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFR----HRTRPCLLFQIKRCSGPCTGEISSEKY 180 F S A ++ + +L LR C + T C L + RC PCTG +S +Y Sbjct: 342 FPSASAAKEAVQALHSALPLRQCTSRITEASAARATTACALADLGRCGAPCTGAMSRSEY 401 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRD 223 E A+ L+ + + +A M++ E YE A + RD Sbjct: 402 AEVTTRARAALATDHREAWQALAARMDELAGAERYEEARVLRD 444 >gi|88861541|ref|ZP_01136144.1| excinuclease ABC, C subunit [Pseudoalteromonas tunicata D2] gi|88816458|gb|EAR26310.1| excinuclease ABC, C subunit [Pseudoalteromonas tunicata D2] Length = 256 Score = 190 bits (482), Expect = 6e-46, Method: Composition-based stats. Identities = 85/260 (32%), Positives = 134/260 (51%), Gaps = 24/260 (9%) Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 + +K + +L D K L IP IE +D S+I G + V MV+ + Sbjct: 14 KNLYNEKKERKTKKLSVLIDLKNKLNLKKIPFHIECFDISNIQGKNTVASMVLFKDGYPN 73 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 K +YRK+ + V DD MR V+ RR++++I+ L PD++I Sbjct: 74 KKEYRKYKIRS--VDKPDDFESMREVVSRRYTRIIREGNPL--------------PDLII 117 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 +DGGKGQLS+A +LK+L V N+I II IAK + E +F ++L + L Sbjct: 118 IDGGKGQLSSACDILKELKVYNKINIIGIAKKLE-----EIYFPNDSIPVLLGKKSEQLK 172 Query: 529 FIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 IQ +R+EAHRFAI H++ R S L+EI GIG + L+++FG+++ I ++ + Sbjct: 173 LIQNIRNEAHRFAINYHKQLRSNTFIQSELEEIYGIGDKTRGKLIRAFGSIENIKKADRK 232 Query: 588 TLASIEGISKKIACKIYNHF 607 L + G K+ KI ++ Sbjct: 233 DLIKLVG--KEKTEKIIRYY 250 >gi|326333554|ref|ZP_08199794.1| putative DNA polymerase III, epsilon subunit [Nocardioidaceae bacterium Broad-1] gi|325948663|gb|EGD40763.1| putative DNA polymerase III, epsilon subunit [Nocardioidaceae bacterium Broad-1] Length = 580 Score = 190 bits (482), Expect = 8e-46, Method: Composition-based stats. Identities = 71/339 (20%), Positives = 126/339 (37%), Gaps = 4/339 (1%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 +E +P PGVY D RVLY+G + +L+ R+++Y ++ R+ M+ ++ Sbjct: 239 AEDLPHAPGVYLFKDSQDRVLYIGTSKDLRTRVRTYFTASETRSRMGEMVGLAATVQGIE 298 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +EA + E +I KP +N R + ++ +T + P L + Y Sbjct: 299 CATALEAGVRELRLIGEHKPPYNRRSRRPEKMHFVKLT-QEPWPRLSLVKRVLDDDADYL 357 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 GPF S E + +L TF +R C+D R PC+L ++ RC PC + +E Y Sbjct: 358 GPFGSKKVAENALQALHDTFPIRQCSDRLPLLPRKTPCVLAELHRCLSPCDQSVPAETYA 417 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND--SIY 239 V ++ + + E I + +E +E A +HRDRL + S Sbjct: 418 TLVSRVRESILHRPDEVVETITERLTGLAEQERFEEAAVHRDRLTSYLRAAARTQRLSAL 477 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299 R+ + ++ G+ + ++ + A + P Sbjct: 478 TRLPDLTAIRREDDGRWAVHVVRHGRLAAAGVIPREANAHAYVADLQLSAETVLDAPGPV 537 Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKR 338 P E L + +R Sbjct: 538 PAASAEETELVLRWLESPGVRLAHIEGEWTCPIDGAGRR 576 >gi|257469478|ref|ZP_05633570.1| excinuclease ABC subunit C [Fusobacterium ulcerans ATCC 49185] Length = 260 Score = 189 bits (480), Expect = 1e-45, Method: Composition-based stats. Identities = 89/283 (31%), Positives = 136/283 (48%), Gaps = 26/283 (9%) Query: 328 KITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDN 387 + +++++E +N R + + L +L P++IE +D Sbjct: 2 FFFPKIKSRRKELLEMGELNLIRDIENHYRKKSVIEEGLYKIYTTLSLKRYPRKIECFDI 61 Query: 388 SHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE 447 S+I G AV M V E K YRKF + D DD AMMR V+ RR+ +L +NE Sbjct: 62 SNIQGKDAVASMSVSVEGKASKQDYRKFKITCKDTP--DDFAMMREVITRRYGKLPENE- 118 Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507 +PDV+++DGG GQ++AA V ++L + ++S+AK + Sbjct: 119 ---------------FPDVILIDGGLGQINAAGEVFRELGKDGISDLLSLAKRDE----- 158 Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPL 566 E + + V + L QR+RDEAHRF IT HRK R K S LDE+ GIG Sbjct: 159 EVYKYGENIPYVFSKDQEALKIFQRVRDEAHRFGITYHRKLRSKRVLSSELDEVEGIGEK 218 Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 RK +LL+ FG+V I++ E+L+ + + +A I K Sbjct: 219 RKAVLLKEFGSVSKIAKEDIESLSRF--VPRNVAENILEKLRK 259 >gi|119717352|ref|YP_924317.1| hypothetical protein Noca_3128 [Nocardioides sp. JS614] gi|119538013|gb|ABL82630.1| DNA polymerase III, epsilon subunit [Nocardioides sp. JS614] Length = 601 Score = 189 bits (480), Expect = 1e-45, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 106/238 (44%), Gaps = 5/238 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 +E +P PGVY D +VLYVG + +L+ R++SY ++ R+ M+ + Sbjct: 225 AEGLPHAPGVYLFRDEQAQVLYVGTSRDLRTRVRSYFTASETRSRMGEMVGIATVVDAIE 284 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +EA + E +I KP++N R+ +I +T + P L R Y Sbjct: 285 CATALEAEVRELRLIAEHKPKYNRRSRNPSKVHFIKLT-REPWPRLSLVRRVLDDDADYL 343 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRH----RTRPCLLFQIKRCSGPCTGEISSE 178 GPF+S EK + +L TF +R C D + PC+L ++ RC PC G + Sbjct: 344 GPFSSKKTAEKCLAALHETFPVRQCTDRLPGDPAAAGRAPCVLAEMGRCLAPCDGSVDHA 403 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 Y VH+ + L + E I M E +E A +HRDRLAA Sbjct: 404 TYAAVVHQLRDTLLRRPDEVVETINAKMGALAADERFEEAGVHRDRLAAFVRAAARTQ 461 >gi|973304|gb|AAC44002.1| exinuclease ABC subunit C [Rhodobacter sphaeroides] Length = 128 Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 60/129 (46%), Positives = 85/129 (65%), Gaps = 2/129 (1%) Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 L++L V++ + I +AKG R AG E+F L M DP+LYF+QRLRDEAHR+AI Sbjct: 1 LQELGVDD-VPFIGVAKGIDRDAGKEEFHRPGEPPFALRMNDPVLYFVQRLRDEAHRWAI 59 Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 HR +R KA +PLDEI G+G RKR LL FG+ K ++R+ L ++EGIS+ +A Sbjct: 60 GAHRAKRAKAVSATPLDEIPGVGAARKRALLAHFGSAKAVARAGVPDLCAVEGISETMAQ 119 Query: 602 KIYNHFHKN 610 I+++FH + Sbjct: 120 SIHDYFHGS 128 >gi|218459312|ref|ZP_03499403.1| excinuclease ABC subunit C [Rhizobium etli Kim 5] Length = 124 Score = 188 bits (478), Expect = 2e-45, Method: Composition-based stats. Identities = 69/122 (56%), Positives = 87/122 (71%), Gaps = 1/122 (0%) Query: 492 ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK 551 + I IAKG R AG E+FF E+ L RDP+LYFIQR+RDEAHRFAI +HR RRKK Sbjct: 2 VMAIGIAKGVDRDAGRERFFPPGRESFTLPPRDPVLYFIQRMRDEAHRFAIGSHRARRKK 61 Query: 552 -AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +PLDEI GIGP RKR LLQ FGT K +SR++ L ++EGIS+ +A ++YNHFH + Sbjct: 62 EMVKNPLDEIGGIGPSRKRALLQHFGTAKAVSRAALSDLMAVEGISEAVAKQVYNHFHDD 121 Query: 611 TS 612 + Sbjct: 122 AA 123 >gi|271964195|ref|YP_003338391.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] gi|270507370|gb|ACZ85648.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] Length = 574 Score = 188 bits (478), Expect = 2e-45, Method: Composition-based stats. Identities = 73/266 (27%), Positives = 110/266 (41%), Gaps = 4/266 (1%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ +P PGVY D G LYVGK+ NL+ R++SY + RI MI + +R Sbjct: 214 ADGVPTGPGVYVFEDERGDPLYVGKSTNLRNRVRSYFTAGETRPRIREMIGIVERVRPIA 273 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +EA + E +I KPR+N R + ++ +T P L R+ Y Sbjct: 274 CATALEAEVRELRLIGSAKPRYNRRSRFPEKMVWLKLT-DEPFPRLSIVREVKDDDAGYL 332 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVF-RHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 GPF S A E +L LR C + + R R C L + RC PC G S+E+Y Sbjct: 333 GPFTSTRAAEDARTALHEAVPLRQCTEKITSRTRRSACALAGLGRCGAPCEGRQSAEEYG 392 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND--SIY 239 A++ + + + M + L++ YE A RDRLA+ S Sbjct: 393 LHTAAARRAMELDVTPVFSAVQARMERLALEQRYEEAAADRDRLASYVRASARMQRLSAL 452 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQ 265 + Q +G+ Sbjct: 453 TSIPQMVAASPAAGGGWQIHVIRYGR 478 >gi|213422192|ref|ZP_03355258.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 311 Score = 188 bits (478), Expect = 2e-45, Method: Composition-based stats. Identities = 95/319 (29%), Positives = 158/319 (49%), Gaps = 26/319 (8%) Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296 + +D + + +AC+ F G+ G+ ++F K + +++ F+ QFY Sbjct: 9 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 68 Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355 + P ILL + +LL S + G ++ + +G++ + ++ A NA + K Sbjct: 69 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALVTK 128 Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 LS + + L LP I R+E +D SH MG V VV NG ++ +YR++ Sbjct: 129 LSQQSTITQRLTALATVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 187 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 N+ + DD A M VL RR+ + I+ + PDV+++DGGKGQ Sbjct: 188 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 230 Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531 L+ A+ V +L+V ++R ++ +AKG R AG+E F +GE L P L+ IQ Sbjct: 231 LAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 290 Query: 532 RLRDEAHRFAITTHRKRRK 550 +RDE+H AI HRK+R+ Sbjct: 291 HIRDESHDHAIGGHRKKRR 309 >gi|170759080|ref|YP_001788524.1| GIY-YIG domain-containing protein [Clostridium botulinum A3 str. Loch Maree] gi|169406069|gb|ACA54480.1| GIY-YIG domain protein [Clostridium botulinum A3 str. Loch Maree] Length = 365 Score = 188 bits (476), Expect = 3e-45, Method: Composition-based stats. Identities = 82/371 (22%), Positives = 152/371 (40%), Gaps = 15/371 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 ++ +P+ PG+Y M D ++YVGK+ NL+KR+ SY NN T +I +I I + ++ Sbjct: 6 KAKLLPQSPGIYIMRDSLSNIIYVGKSKNLRKRVYSYFIKQNNATSKIEKLIKNIKDFQY 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE+EALLLE IK +KP++N L+++ + + YI I K + P + + Sbjct: 66 ICTDTELEALLLECTFIKCIKPQYNRLMKNHERYTYIQINIKDQYPIIKVAPEIKDDNSL 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 Y+GPF + + + K + L L C + + C+ + I +C GPC ISS++Y Sbjct: 126 YYGPFINYNRILKFVEGLNEILPLIKCNN--YLKHKSTCINYAIGKCKGPCIENISSKQY 183 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN--HNDSI 238 +++ + F G + + + M + ++E A I +D + + + + Sbjct: 184 KKYIDKVISFFQGEKDLII-LLEKYMREYCETLEFEKAKIFKDYIDVFNSVFQEYKHIVR 242 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 N + F + + F T + + S+ + + Y Sbjct: 243 LNNYNKFIIVDITRKNISKVIFIDNHNIEYIDTINIDSMSKKSLEE---------YFKNI 293 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 L+S E +++ F K+ + + N + L Sbjct: 294 YLRFCLISHNKETKNIVSKEFIDYVHIIFSYINMKKEDIVYSNIEQDDNVCDLEEESLKW 353 Query: 359 EISHQMILKDF 369 L F Sbjct: 354 SNYIIDKLNKF 364 >gi|317063722|ref|ZP_07928207.1| excinuclease ABC subunit C [Fusobacterium ulcerans ATCC 49185] gi|313689398|gb|EFS26233.1| excinuclease ABC subunit C [Fusobacterium ulcerans ATCC 49185] Length = 244 Score = 188 bits (476), Expect = 3e-45, Method: Composition-based stats. Identities = 88/268 (32%), Positives = 129/268 (48%), Gaps = 26/268 (9%) Query: 343 QALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVV 402 +N R + + L +L P++IE +D S+I G AV M V Sbjct: 1 MGELNLIRDIENHYRKKSVIEEGLYKIYTTLSLKRYPRKIECFDISNIQGKDAVASMSVS 60 Query: 403 GENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPS 462 E K YRKF + D DD AMMR V+ RR+ +L +NE Sbjct: 61 VEGKASKQDYRKFKITCKDTP--DDFAMMREVITRRYGKLPENE---------------- 102 Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522 +PDV+++DGG GQ++AA V ++L + ++S+AK + E + + V + Sbjct: 103 FPDVILIDGGLGQINAAGEVFRELGKDGISDLLSLAKRDE-----EVYKYGENIPYVFSK 157 Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMI 581 L QR+RDEAHRF IT HRK R K S LDE+ GIG RK +LL+ FG+V I Sbjct: 158 DQEALKIFQRVRDEAHRFGITYHRKLRSKRVLSSELDEVEGIGEKRKAVLLKEFGSVSKI 217 Query: 582 SRSSPETLASIEGISKKIACKIYNHFHK 609 ++ E+L+ + + +A I K Sbjct: 218 AKEDIESLSRF--VPRNVAENILEKLRK 243 >gi|88861289|ref|ZP_01135920.1| excinuclease ABC subunit C [Pseudoalteromonas tunicata D2] gi|88816668|gb|EAR26492.1| excinuclease ABC subunit C [Pseudoalteromonas tunicata D2] Length = 115 Score = 188 bits (476), Expect = 4e-45, Method: Composition-based stats. Identities = 53/109 (48%), Positives = 74/109 (67%), Gaps = 1/109 (0%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+MLD V+YVGKA NL+KR+ SY +N + ++ I+ I T+ Sbjct: 8 LKTLSSEPGVYRMLDKDDHVIYVGKAKNLKKRVSSYFRANIPESKTRALVKNIHQIEVTL 67 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKH 111 T TE EALLLE N+IK+ PR+NILLRDDKS+PYIL+T +H+ P + + Sbjct: 68 TNTETEALLLENNLIKQYMPRYNILLRDDKSYPYILVT-EHRHPRIAFY 115 >gi|289809921|ref|ZP_06540550.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 147 Score = 187 bits (475), Expect = 5e-45, Method: Composition-based stats. Identities = 57/142 (40%), Positives = 89/142 (62%), Gaps = 5/142 (3%) Query: 468 ILDGGKGQLSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMR 523 ++DGGKGQL+ A+ V +L+V ++R ++ +AKG R AG+E F +GE L Sbjct: 1 MIDGGKGQLAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPD 60 Query: 524 DPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMIS 582 P L+ IQ +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + Sbjct: 61 SPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLR 120 Query: 583 RSSPETLASIEGISKKIACKIY 604 +S E +A + GIS+ +A KI+ Sbjct: 121 NASVEEIAKVPGISQGLAEKIF 142 >gi|226950632|ref|YP_002805723.1| GIY-YIG domain protein [Clostridium botulinum A2 str. Kyoto] gi|226841645|gb|ACO84311.1| GIY-YIG domain protein [Clostridium botulinum A2 str. Kyoto] Length = 365 Score = 187 bits (474), Expect = 6e-45, Method: Composition-based stats. Identities = 79/350 (22%), Positives = 154/350 (44%), Gaps = 8/350 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 ++ +P+ PG+Y M D ++YVGK+ NL+KR+ SY NN T +I +I I + ++ Sbjct: 6 KAKLLPQSPGIYIMRDSLSNIIYVGKSKNLRKRVCSYFIKQNNATSKIEKLIKNIKDFQY 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE+EALLLE IK +KP++N L+++ + + YI I K + P + + Sbjct: 66 ICTDTELEALLLECTFIKCIKPQYNRLMKNHERYIYIQINIKDQYPIIKVASEIKDDNYL 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 Y+GPF + + + K + L L C + + C+ + I +C GPC ISS+ Y Sbjct: 126 YYGPFINYNRILKFVEGLNEILPLIKCNN--YLKHKSTCINYAIGKCKGPCIENISSKHY 183 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN--HNDSI 238 +++ + F +G + + + M + ++E A + +D + + + + Sbjct: 184 KKYIDKVISFFNGEKDLII-LLEKYMREYCETLEFEKAKLFKDYIDVFNSVFQEYKHIVR 242 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--TD 296 N + F + + F + T + S+ + +FY + Sbjct: 243 LNNYNKFIIVDITRKNISKVIFINNHNIEYIDTINIDIMSKKNLEEYFKDIYLRFYLISH 302 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 +NI+ E + ++ + V + + + E++L Sbjct: 303 NKESKNIVSKEFIDYVHIIFSYINMKKEDIVYSNIEQDDNVCDLEEKSLK 352 >gi|168179147|ref|ZP_02613811.1| GIY-YIG domain protein [Clostridium botulinum NCTC 2916] gi|182670128|gb|EDT82104.1| GIY-YIG domain protein [Clostridium botulinum NCTC 2916] Length = 365 Score = 187 bits (474), Expect = 6e-45, Method: Composition-based stats. Identities = 80/350 (22%), Positives = 154/350 (44%), Gaps = 8/350 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 ++ +P+ PG+Y M D ++YVGK+ NL+KR+ SY NN T +I +I I + ++ Sbjct: 6 KAKLLPQSPGIYIMRDSLSNIIYVGKSKNLRKRVCSYFIKQNNATSKIEKLIKNIKDFQY 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE+EALLLE IK +KP++N L+++ + + YI I K + P + + Sbjct: 66 ICTDTELEALLLECTFIKCIKPQYNRLMKNHERYIYIQINIKDQYPIIKVASEIKDDNYL 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 Y+GPF + + + K + L L C + + C+ + I +C GPC ISS++Y Sbjct: 126 YYGPFINYNRILKFVEGLNEILPLIKCNN--YLKHKSTCINYAIGKCKGPCIENISSKQY 183 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN--HNDSI 238 +++ + F G + + + M + ++E A I +D + + + + Sbjct: 184 KKYIDKVISFFQGEKDLII-LLEKYMREYCETLEFEKAKIFKDYIDVFNSVFQEYKHIVR 242 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--TD 296 N + F + + F + T + S+ + +FY + Sbjct: 243 LNNYNKFIIVDITRKNISKVIFINNHNIEYIDTINIDIMSKKNLEEYFKDIYLRFYLISH 302 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 +NI+ E + ++ + V + + + E++L Sbjct: 303 NKESKNIVSKEFIDYVHIIFSYINMKKEDIVYSNIKQDDNVCDLEEKSLK 352 >gi|311742833|ref|ZP_07716641.1| DNA polymerase III epsilon subunit [Aeromicrobium marinum DSM 15272] gi|311313513|gb|EFQ83422.1| DNA polymerase III epsilon subunit [Aeromicrobium marinum DSM 15272] Length = 569 Score = 187 bits (474), Expect = 6e-45, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 104/229 (45%), Gaps = 2/229 (0%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++++P GVY D A VLYVG + +L++R+++Y + R+ M+ I V Sbjct: 227 ADKVPNAAGVYLFRDRADDVLYVGTSADLRRRVRTYFTRSETRSRMGEMVMLAERIETVV 286 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +EA + E +I +P +N +D ++ +T + P + Y Sbjct: 287 CATALEARVRELRLIAHHRPPYNRRSKDPARTTWVKLT-QEPWPRISLVPQVRDDGADYI 345 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTR-PCLLFQIKRCSGPCTGEISSEKYM 181 GPF S + +++ TF +R C D + R R PC+L ++ RC PC G E Y Sbjct: 346 GPFRSRAEAVEATHAVHDTFAIRQCTDRMGRTSRRSPCVLAEMDRCLSPCDGSADPEVYA 405 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH 230 V + L+ + ++I M E +E A + RDRL AL Sbjct: 406 IEVGRVRSALTADPVEVVDRIGDRMRDLAADERFEDAALWRDRLQALVR 454 >gi|148381152|ref|YP_001255693.1| GIY-YIG domain protein [Clostridium botulinum A str. ATCC 3502] gi|153932775|ref|YP_001385527.1| GIY-YIG domain-containing protein [Clostridium botulinum A str. ATCC 19397] gi|153936066|ref|YP_001388933.1| GIY-YIG domain-containing protein [Clostridium botulinum A str. Hall] gi|148290636|emb|CAL84765.1| putative nuclease [Clostridium botulinum A str. ATCC 3502] gi|152928819|gb|ABS34319.1| GIY-YIG domain protein [Clostridium botulinum A str. ATCC 19397] gi|152931980|gb|ABS37479.1| GIY-YIG domain protein [Clostridium botulinum A str. Hall] Length = 365 Score = 186 bits (473), Expect = 8e-45, Method: Composition-based stats. Identities = 80/350 (22%), Positives = 154/350 (44%), Gaps = 8/350 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 ++ +P+ PG+Y M D ++YVGK+ NL+KR+ SY NN T +I +I I + ++ Sbjct: 6 KAKLLPQSPGIYIMRDSLSNIIYVGKSKNLRKRVYSYFIKQNNATSKIEKLIKNIKDFQY 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE+EALLLE IK +KP++N L+++ + + YI I K + P + + Sbjct: 66 ICTDTELEALLLECTFIKCIKPQYNRLMKNHERYIYIQINIKDQYPIIKVASEIKDDNYL 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 Y+GPF + + + K + L L C + + C+ + I +C GPC ISS++Y Sbjct: 126 YYGPFINYNRILKFVEGLNEILPLIKCNN--YLKHKSTCINYAIGKCKGPCIENISSKQY 183 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN--HNDSI 238 +++ + F G + + + M + ++E A I +D + + + + Sbjct: 184 KKYIDKVISFFQGEKDLII-LLEKYMREYCETLEFEKAKIFKDYIDVFNSVFQEYKHIVR 242 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--TD 296 N + F + + F + T + S+ + +FY + Sbjct: 243 LNNYNKFIIVDITRKNISKVIFINNHNIEYIDTINIDIMSKKNLEEYFKDIYLRFYLISH 302 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 +NI+ E + ++ + V + + + E++L Sbjct: 303 NKESKNIVSKEFIDYVHIIFSYINMKKEDIVYSNIEQDDNVCDLEEKSLK 352 >gi|254445701|ref|ZP_05059177.1| UvrC Helix-hairpin-helix N-terminal domain family [Verrucomicrobiae bacterium DG1235] gi|198260009|gb|EDY84317.1| UvrC Helix-hairpin-helix N-terminal domain family [Verrucomicrobiae bacterium DG1235] Length = 472 Score = 186 bits (472), Expect = 9e-45, Method: Composition-based stats. Identities = 76/300 (25%), Positives = 129/300 (43%), Gaps = 25/300 (8%) Query: 312 TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTK 371 L E + + + + + L S + LK K Sbjct: 193 DELKEEMAREATERNYEKAAALRDIVFALEASLKKTRK--FERDLPVRESAEETLKLLQK 250 Query: 372 KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMM 431 + ++ +PK IE +D SHI G V M+ + K YR+F + K DD M Sbjct: 251 ELSMELVPKTIECFDISHISGTFVVASMIQFVDGRPNKAGYRRFKIKS--FKGNDDFRSM 308 Query: 432 RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENR 491 V+ RR+ +L K + +P+++++DGG+GQ+ AA ++E Sbjct: 309 EEVVGRRYRRLHKEGKA--------------FPELIVIDGGRGQVGAAVKSFLMQDLE-P 353 Query: 492 ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK 551 +I +AK + F + L L ++ L +QR RDEAHRFA T + R K Sbjct: 354 PELIGLAKKHET-----IIFPDERPPLRLPLKHAGLQLLQRCRDEAHRFANTFNADLRSK 408 Query: 552 AAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 S LD+ G+GP ++ LL FG+++ + +S L S++GI + A ++ ++ Sbjct: 409 RIRESILDDFTGLGPKKRNSLLDEFGSIERLKSASITELRSVDGIGLETATRLKIFLDEH 468 Score = 181 bits (458), Expect = 4e-43, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 106/226 (46%), Gaps = 4/226 (1%) Query: 13 YQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN---HTHRITHMISQINNIRFTVTCTEVEA 69 Y M D G V+YVGKA +L+KR+ SY ++ H +I ++ I + + +E EA Sbjct: 2 YLMKDRLGSVIYVGKAKDLKKRVSSYFQASKKFTHQPKIRALVQMIRDFEYIEVKSEPEA 61 Query: 70 LLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVD 129 LLLE +IK+ KP++N DDK F + + ++P R YFGPFA + Sbjct: 62 LLLEGKLIKKWKPKYNTDFVDDKRFLLVRVDVTRELPRFALARFKKEDGARYFGPFAHAN 121 Query: 130 AVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPC-TGEISSEKYMEFVHEAK 188 + KT+ ++R F + + R L+ R ++ E+Y E V EA Sbjct: 122 HIRKTLTEMRRRFGILLGDATPKREEDGQFRLYDDVRSEIYGHENVVTVEEYQERVEEAC 181 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234 +FL G + +++ M + + +YE A RD + AL Sbjct: 182 EFLQGKSREWLDELKEEMAREATERNYEKAAALRDIVFALEASLKK 227 >gi|153938533|ref|YP_001392555.1| GIY-YIG domain-containing protein [Clostridium botulinum F str. Langeland] gi|152934429|gb|ABS39927.1| GIY-YIG domain protein [Clostridium botulinum F str. Langeland] gi|295320541|gb|ADG00919.1| GIY-YIG domain protein [Clostridium botulinum F str. 230613] Length = 365 Score = 186 bits (472), Expect = 1e-44, Method: Composition-based stats. Identities = 81/350 (23%), Positives = 154/350 (44%), Gaps = 8/350 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 ++ +P+ PG+Y M D ++YVGK+ NL+KR+ SY NN T +I +I I + ++ Sbjct: 6 KAKLLPQSPGIYIMRDSLSNIIYVGKSKNLRKRVYSYFIKQNNATSKIEKLIKNIKDFQY 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE+EALLLE IK +KP++N L+++ + + YI I K + P + + Sbjct: 66 ICTDTELEALLLECTFIKCIKPQYNRLMKNHERYIYIQINIKDQYPIIKVASEIKDDNYL 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 Y+GPF + + + K + L L C + + C+ + I +C GPC ISS++Y Sbjct: 126 YYGPFINYNRILKFVEGLNEILPLIKCNN--YLKHKSTCINYAIGKCKGPCIENISSKQY 183 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN--HNDSI 238 +++ + F G + + + M + ++E A I +D + + I + Sbjct: 184 KKYIDKVISFFQGEKDLII-LLEKYMREYCETLEFEKAKIFKDYIDVFNSIFQEYRHIVR 242 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--TD 296 N + F + + F + T + S+ + +FY + Sbjct: 243 LNNYNKFIIVDITRKNISKVIFINNHNIEYIDTINIDIMSKKNLEEYFKDIYLRFYLISH 302 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 +NI+ E + ++ + V + + + E++L Sbjct: 303 NKESKNIVSKEFIDYVHIIFSYINMKKEDIVYSNIEQDDNVCDLEEKSLK 352 >gi|168183520|ref|ZP_02618184.1| GIY-YIG domain protein [Clostridium botulinum Bf] gi|237796659|ref|YP_002864211.1| GIY-YIG domain-containing protein [Clostridium botulinum Ba4 str. 657] gi|182673340|gb|EDT85301.1| GIY-YIG domain protein [Clostridium botulinum Bf] gi|229262167|gb|ACQ53200.1| GIY-YIG domain protein [Clostridium botulinum Ba4 str. 657] Length = 365 Score = 186 bits (471), Expect = 1e-44, Method: Composition-based stats. Identities = 81/350 (23%), Positives = 156/350 (44%), Gaps = 8/350 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 ++ +P+ PG+Y M D ++YVGK+ NL+KR+ SY NN T +I +I I + ++ Sbjct: 6 KAKLLPQSPGIYIMRDSLSNIIYVGKSKNLRKRVYSYFIKQNNATSKIEKLIKNIKDFQY 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE+EALLLE IK +KP++N L+++ + + YI I K + P + + Sbjct: 66 ICTDTELEALLLECTFIKCIKPQYNRLMKNHERYIYIQINIKDQYPIIKVAPEIKDDNFL 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 Y+GPF + + + K + L L C + + T C+ + I +C GPC ISS++Y Sbjct: 126 YYGPFINYNRILKFVEGLNEILPLIKCNNHLKHKST--CINYAIGKCKGPCIENISSKQY 183 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN--HNDSI 238 +++ + F G + + + M + ++E A I +D + + + + Sbjct: 184 KKYIDKVISFFQGEKDLII-LLEKYMREYCETLEFEKAKIFKDYIDVFNSVFQEYKHIVR 242 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--TD 296 N + F + + F + T + + S+ + +FY + Sbjct: 243 LNNYNKFIIVDITRKNISKVIFINNHNIEYIDTINIDSMSKKNLEEYFKDIYLRFYLISH 302 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 +NI+ E + ++ + V + + + E++L Sbjct: 303 NKESKNIVSKEFIDYVHIIFSYINMKKEDIVYSNIEQDDNVCDLEEKSLK 352 >gi|170756897|ref|YP_001782843.1| GIY-YIG domain-containing protein [Clostridium botulinum B1 str. Okra] gi|169122109|gb|ACA45945.1| GIY-YIG domain protein [Clostridium botulinum B1 str. Okra] Length = 365 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 80/350 (22%), Positives = 154/350 (44%), Gaps = 8/350 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60 ++ +P+ PG+Y M D ++YVGK+ NL+KR+ SY NN T +I +I I + ++ Sbjct: 6 KAKLLPQSPGIYIMRDSLSNIIYVGKSKNLRKRVYSYFIKQNNATSKIEKLIKNIKDFQY 65 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE+EALLLE IK +KP++N L+++ + + YI I K + P + + Sbjct: 66 ICTDTELEALLLECTFIKCIKPQYNRLMKNHERYIYIQINIKDQYPIIKVAWEIKDDNYL 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 Y+GPF + + + K + L L C + + C+ + I +C GPC ISS++Y Sbjct: 126 YYGPFINYNRILKFVEGLNEILPLIKCNN--YLKHKSTCINYAIGKCKGPCIENISSKQY 183 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN--HNDSI 238 +++ + F G + + + M + ++E A I +D + + + + Sbjct: 184 KKYIDKVISFFQGEKDLII-LLEKYMREYCETLEFEKAKIFKDYIDVFNSVFQEYRHIVR 242 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--TD 296 N + F + + F + T + S+ + +FY + Sbjct: 243 LNNYNKFIIVDITRKNISKVIFINNHNIEYIDTINIDIMSKKNLEEYFKDIYLRFYLISH 302 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346 +NI+ E + ++ + V + + + E++L Sbjct: 303 NKESKNIVSKEFIDYVHIIFSYINMKKEDIVYSNIEQDDNVCDLEEKSLK 352 >gi|309812650|ref|ZP_07706394.1| GIY-YIG catalytic domain protein [Dermacoccus sp. Ellin185] gi|308433345|gb|EFP57233.1| GIY-YIG catalytic domain protein [Dermacoccus sp. Ellin185] Length = 608 Score = 183 bits (465), Expect = 7e-44, Method: Composition-based stats. Identities = 56/262 (21%), Positives = 105/262 (40%), Gaps = 5/262 (1%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ +P PGVY + G+ LYVG + NL+ R++SY ++ + M+ + Sbjct: 223 ADGLPAEPGVYVFENEDGKPLYVGTSGNLRTRVRSYFTASEKRREMGLMVDLAARVTPIP 282 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +EA + E +I +PRFN + ++ IT K P L R+ + +Y Sbjct: 283 CATSLEAHVREIRLIAEHRPRFNRRSSRPEKIAWLKIT-DEKFPRLSVVREQRADEATYL 341 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF ++ A +++ +R C + C+L ++ RC PC G I+ Y++ Sbjct: 342 GPFRTMVAARLARDAVHDVRRIRQCTTPIRAKGGTACVLAEMDRCDAPCIGGITQRDYLD 401 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAI----IHRDRLAALSHIQNHNDSI 238 V ++ L ++ + + + +E +E A + L L Q + Sbjct: 402 LVSRLRQELLNEPGSIVNDVEARLARLAGQERFEEARAGRDALIELLRGLDRHQRRAPIV 461 Query: 239 YNRMDCFSLYHNKNLACIQTCF 260 N + Sbjct: 462 NNPHLMAARPRRGGGWEFAVIR 483 >gi|326791317|ref|YP_004309138.1| excinuclease ABC C subunit domain protein [Clostridium lentocellum DSM 5427] gi|326542081|gb|ADZ83940.1| Excinuclease ABC C subunit domain protein [Clostridium lentocellum DSM 5427] Length = 355 Score = 183 bits (464), Expect = 8e-44, Method: Composition-based stats. Identities = 71/237 (29%), Positives = 114/237 (48%), Gaps = 6/237 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRF 60 ++ + PGVY M D G V+YVGK+ +L+ R+ SY S H RI M++ I+ Sbjct: 9 QAKNLSLTPGVYLMKDREGYVIYVGKSKHLKNRVSSYFGSLKHVKPRIKRMVAAIDTFEC 68 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE++AL+LE +IK+ KP +N LL+++K + YI + + + ++ + G Sbjct: 69 KYTDTELDALILECVLIKQYKPLYNRLLKNEKKYRYIHVGIEESLGSVTAVYEKGN-TGL 127 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGP+ + + +L+ F L SC CL +++KRC GPC E Sbjct: 128 YFGPYDQSADLLTAVEALRNYFRLPSCKQG---EGVEGCLTYKLKRCVGPCQDSNREEHQ 184 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 FL G N M +A+ + D+ AII+R AL + ++ Sbjct: 185 KALKS-LVLFLEGENQLPLVFYETAMKEASEQLDFNKAIIYRQNWYALKRLGYRQEA 240 >gi|71893421|ref|YP_278867.1| excinuclease ABC subunit C [Mycoplasma hyopneumoniae J] gi|72080408|ref|YP_287466.1| excinuclease ABC subunit C [Mycoplasma hyopneumoniae 7448] gi|71851548|gb|AAZ44156.1| excinuclease ABC subunit C [Mycoplasma hyopneumoniae J] gi|71913532|gb|AAZ53443.1| excinuclease ABC subunit C [Mycoplasma hyopneumoniae 7448] Length = 505 Score = 183 bits (464), Expect = 8e-44, Method: Composition-based stats. Identities = 96/541 (17%), Positives = 194/541 (35%), Gaps = 70/541 (12%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P GVY+ D +LYVGKA NL+ R+ Y ++++ +I + I++ + Sbjct: 2 LPNQVGVYRFYDEKNTLLYVGKAKNLKSRMNQYAKGATNSYKTEVLIRKTKEIKYDILQN 61 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPA---LYKHRDSSTIQGSYF 122 E EAL+LE +I + +P +NI L+DD+++PYI + + K+ R + ++ Sbjct: 62 ETEALILEKKIISKFQPIYNIKLKDDQNYPYIKLELEKKLNIELVYKISRSKKSKNIFFY 121 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF + + L+ + V L + C Sbjct: 122 GPFLNKSSALVLKKILENIVLYKKGQQIVQSEPE--ILNQKFFLCKKILQE--------- 170 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRD-----RLAALSHIQNHNDS 237 L + + +A +E A + + + ++ Sbjct: 171 -------------QKLISFCEQKLEKAKKNNQFELANEYHKALIALKKTKIEQQNIELNN 217 Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 + N + +N I F+ G F + T ++L FL +Y Sbjct: 218 LKNIDFLYYSEIGENNLVISFAFYRNGVFLSNKNFIIDIILNYT--EVLINFLNNYYKIN 275 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P+ +++ + + + K+ I + K + + I+ N + Sbjct: 276 IYPDELVVKNFWPKNA-------EFLDPKINIKIGKSLKYKHILNTLAKNHQDFISHNFD 328 Query: 358 TEISHQMILK---DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 EI ++ + + K ++I D S++ ++ + +N R Sbjct: 329 QEIKKKIKNQKILELVKTSLKIENVEKIMAIDCSNLESNYPTTGIIFYINGIYERNYNRF 388 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 FN + + + F + IKN + L PD++++DGG Sbjct: 389 FNYRGTKKGDTN-------YMRQGFEKYIKNPKFLK-------------PDLILVDGGIQ 428 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ +L+K + E I I + K + EK G+ + L +L F ++ Sbjct: 429 QINLIIEILRKNHFE--IPIFGMVKNKRHKT--EKIIDLNGKKINLAQ--EVLNFFALIQ 482 Query: 535 D 535 + Sbjct: 483 E 483 >gi|322378909|ref|ZP_08053325.1| excinuclease ABC subunit C [Helicobacter suis HS1] gi|321148651|gb|EFX43135.1| excinuclease ABC subunit C [Helicobacter suis HS1] Length = 422 Score = 182 bits (463), Expect = 1e-43, Method: Composition-based stats. Identities = 75/240 (31%), Positives = 117/240 (48%), Gaps = 14/240 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQIN 56 +P G+Y D R+LYVGKA NLQKRI SY + ++ R+ M++QI Sbjct: 13 NLPTHSGIYLYFDTKHRLLYVGKAKNLQKRILSYFKIKDGQVLPNPKNSLRVQRMVAQIA 72 Query: 57 NIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST 116 +I+ E EALLLE IK +P++NILL+DDK++PYI + P R Sbjct: 73 SIQTQFAANEEEALLLENQTIKAYQPKYNILLKDDKTYPYICVDLTKPYPFFALARKV-K 131 Query: 117 IQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176 + FGPF+S + SL L + C+ ++++RC PC G+I+ Sbjct: 132 PGYTGFGPFSSG--ARDILESLLEFVPLVQSK--SCLQGKKACIFYEMRRCKAPCEGKIT 187 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + Y V +A L+ + + I + M L+E +E A I+RD L + + ++ Sbjct: 188 QQDYALLVEQALALLTDKSKLV-ALIEQRMRTLALQERFEEAAIYRDHLQKIQALLKRSE 246 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 68/204 (33%), Positives = 102/204 (50%), Gaps = 31/204 (15%) Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415 +E S + ++ F L +P+RIEI+D SH VG MVV ++KN YR++ Sbjct: 243 KRSEQSEERLIHALQTLFKLQKLPQRIEIFDASHHAQTHCVGGMVVFSHGKWLKNAYRRY 302 Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475 ++ +D+ A MR +LERR L + PD+ +LDGG+ Q Sbjct: 303 -----LLQGKDEYAQMREMLERRLKNLKE------------------MPDLWLLDGGRAQ 339 Query: 476 LSAAQGVLKKLNVENRITIISIAK-----GPKRSAGM-EKFFVKKGEALVLNMRDPILYF 529 + A+ +LK + I ++ IAK KR+ G E + + L +D L F Sbjct: 340 VCLAEDILKAAGFD--IKVLGIAKAKVRGKAKRARGDVEDVIYESNQTWHLKAQDSCLQF 397 Query: 530 IQRLRDEAHRFAITTHRKRRKKAA 553 +Q+LRDEAHRFAI+ HR R+ KA Sbjct: 398 LQKLRDEAHRFAISYHRLRKLKAL 421 >gi|72161431|ref|YP_289088.1| hypothetical protein Tfu_1027 [Thermobifida fusca YX] gi|71915163|gb|AAZ55065.1| DNA polymerase III, epsilon subunit [Thermobifida fusca YX] Length = 590 Score = 182 bits (463), Expect = 1e-43, Method: Composition-based stats. Identities = 73/277 (26%), Positives = 119/277 (42%), Gaps = 3/277 (1%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ +PE PGVY D +G LYVGK+ NL+ R++SY + RI M+ + ++ V Sbjct: 244 ADGIPEAPGVYVFEDASGDPLYVGKSVNLRARVRSYFTAAEQRGRIKEMVGRAVRVQPIV 303 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T VEA + E +I KP +N R + P+++IT + P L R Sbjct: 304 CATAVEAEVRELRLIAARKPPYNRRSRHPERAPWLVIT-AEEFPRLAVVRQVGDNYLGAL 362 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEKYM 181 GPF+S ++L + F +R C + R C L ++ RC PCTG S+ +Y Sbjct: 363 GPFSSSRTALLARDALHQAFPVRQCTHRITPPRPDAACALAEMGRCGAPCTGAQSAAEYA 422 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND-SIYN 240 V + ++G + + ++ + YE A +HRDRL+A Sbjct: 423 AHVQAVAQAMTGDVSAVVAALTARIDTLARELRYEEAALHRDRLSAFLAAAVRTQRVRAL 482 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTD 277 + A + C +G+ G+ D Sbjct: 483 SAVPHLVAARPAGADWEVCVVRYGRLAGSARLRPGAD 519 >gi|312601035|gb|ADQ90290.1| Excinuclease ABC subunit C [Mycoplasma hyopneumoniae 168] Length = 516 Score = 182 bits (463), Expect = 1e-43, Method: Composition-based stats. Identities = 96/541 (17%), Positives = 194/541 (35%), Gaps = 70/541 (12%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P GVY+ D +LYVGKA NL+ R+ Y ++++ +I + I++ + Sbjct: 13 LPNQVGVYRFYDEKNTLLYVGKAKNLKSRMNQYAKGATNSYKTEVLIRKTKEIKYDILQN 72 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPA---LYKHRDSSTIQGSYF 122 E EAL+LE +I + +P +NI L+DD+++PYI + + K+ R + ++ Sbjct: 73 ETEALILEKKIISKFQPIYNIKLKDDQNYPYIKLELEKKLNIELVYKISRSKKSKNIFFY 132 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF + + L+ + V L + C Sbjct: 133 GPFLNKSSALVLKKILENIVLYKKGQQIVQSEPE--ILNQKFFLCKKILQE--------- 181 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRD-----RLAALSHIQNHNDS 237 L + + +A +E A + + + ++ Sbjct: 182 -------------QKLISFCEQKLEKAKKNNQFELANEYHKALIALKKTKIEQQNIELNN 228 Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 + N + +N I F+ G F + T ++L FL +Y Sbjct: 229 LKNIDFLYYSEIGENNLVISFAFYRNGVFLSNKNFIIDIILNYT--EVLINFLNNYYKIN 286 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357 P+ +++ + + + K+ I + K + + I+ N + Sbjct: 287 IYPDELVVKNFWPKNA-------EFLDPKINIKIGKSLKYKHILNTLAKNHQDFISHNFD 339 Query: 358 TEISHQMILK---DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 EI ++ + + K ++I D S++ ++ + +N R Sbjct: 340 QEIKKKIKNQKILELVKTSLKIENVEKIMAIDCSNLESNYPTTGIIFYINGIYERNYNRF 399 Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474 FN + + + F + IKN + L PD++++DGG Sbjct: 400 FNYRGTKKGDTN-------YMRQGFEKYIKNPKFLK-------------PDLILVDGGIQ 439 Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 Q++ +L+K + E I I + K + EK G+ + L +L F ++ Sbjct: 440 QINLIIEILRKNHFE--IPIFGMVKNKRHKT--EKIIDLNGKKINLAQ--EVLNFFALIQ 493 Query: 535 D 535 + Sbjct: 494 E 494 >gi|167949185|ref|ZP_02536259.1| Excinuclease ABC subunit C [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 221 Score = 182 bits (463), Expect = 1e-43, Method: Composition-based stats. Identities = 83/219 (37%), Positives = 110/219 (50%), Gaps = 26/219 (11%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMIS-------------QINNIRFT 61 M+ +VLYVGK ++ QI I T Sbjct: 1 MIGTDDKVLYVGK-------------GEESEAAGEQLLHPRSQSAHPAAWFVQIERIEVT 47 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT TE EAL+LE N+IK LKPR+N+LLRDDKS+PYI ++ PAL R S G Y Sbjct: 48 VTHTEAEALILENNLIKSLKPRYNVLLRDDKSYPYIHLSTDQSFPALSFRRGSRKGGGRY 107 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 FGP+ S + +T+ LQ+ F +R C + FR+R+R CL +QIKRCS PC G IS Y Sbjct: 108 FGPYPSAGSTRETLQLLQKLFPVRQCEEGFFRNRSRACLQYQIKRCSAPCVGLISETDYR 167 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAII 220 E V A+ FL G + + + M A+ +E A Sbjct: 168 EDVRHAELFLDGKTSTVVDALVARMEAASAALAFEQAAP 206 >gi|332670685|ref|YP_004453693.1| DNA polymerase III subunit epsilon [Cellulomonas fimi ATCC 484] gi|332339723|gb|AEE46306.1| DNA polymerase III, epsilon subunit [Cellulomonas fimi ATCC 484] Length = 620 Score = 182 bits (463), Expect = 1e-43, Method: Composition-based stats. Identities = 64/233 (27%), Positives = 106/233 (45%), Gaps = 6/233 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAY-NLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 ++ +P+ PGVY VLYVG + +L++R++SY S R+T M+ + + Sbjct: 237 ADGLPDAPGVYLFRGPNDEVLYVGTSTTSLRQRVRSYFTSAEKRRRMTEMVRIAHRVDPV 296 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGS 120 V T +EA + E +I PR+N R + P++ +T P L R+ + Sbjct: 297 VCATPLEARVRELRLIAEHSPRYNRRSRFPERMPWVRLT-SEPYPRLSVVREVREEDGAA 355 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISS 177 Y GPF S A + +++L +F +R C + C+L ++ RC PC G Sbjct: 356 YIGPFGSTAAAQLALDALHESFPVRQCTRRLPLVAPAGATACVLAELGRCGAPCLGRQGP 415 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH 230 + Y E V + ++G + A + +E +E A RDRLAA Sbjct: 416 DAYREVVDRVRTAMTGDPAGVVAAHAERIAWLVGQERFEEAATVRDRLAAFLR 468 >gi|315932394|gb|EFV11337.1| GIY-YIG catalytic domain protein [Campylobacter jejuni subsp. jejuni 327] Length = 147 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 46/123 (37%), Positives = 71/123 (57%), Gaps = 7/123 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54 + +P GVYQ + G++LYVGKA NL+ R+KSY + ++ RI MI + Sbjct: 9 ELKTLPNSAGVYQYFNQEGKLLYVGKAKNLKNRVKSYFAFTPNLHANPRNSLRIQKMIEE 68 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114 ++ F T +E +AL+LE + IK+L P++NILLRDDK++PYI + + + P R Sbjct: 69 TVHLEFITTNSEADALILENSFIKQLHPKYNILLRDDKTYPYIYVDFEEEFPRFEITRKL 128 Query: 115 STI 117 Sbjct: 129 VKK 131 >gi|134098272|ref|YP_001103933.1| hypothetical protein SACE_1689 [Saccharopolyspora erythraea NRRL 2338] gi|133910895|emb|CAM01008.1| DNA polymerase III, epsilon subunit [Saccharopolyspora erythraea NRRL 2338] Length = 572 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 111/234 (47%), Gaps = 6/234 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ +P GVY VLYVG A +L++R++ Y + RI M+ I V Sbjct: 219 ADALPNASGVYLFRGPNEEVLYVGTATDLRRRVRQYFTAGEKRSRIKEMVGLAERIDHVV 278 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +EA + E ++ +PR+N + + ++++T P L R + Sbjct: 279 CAHPLEAEVRELRLLAAHQPRYNRRSKFPQRAWWVVLT-DEPFPRLSVVRTPRP---TAL 334 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSEKY 180 GPFAS A + +++LQ +R C + + R RPC L++++RC+ PC G S+E Y Sbjct: 335 GPFASRRAAAEAVDALQEATKVRRCTERIPARDPRGRPCALYELQRCAAPCAGLQSAEDY 394 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234 V ++G + ++ + + + + +E A +HRDRLAAL + Sbjct: 395 APEVIAISDVVAGLGTGVLHRLRAELERLSRAQRFEDAAVHRDRLAALVRSLDR 448 >gi|255023886|ref|ZP_05295872.1| excinuclease ABC, chain C (UvrC) [Listeria monocytogenes FSL J1-208] Length = 144 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 46/135 (34%), Positives = 77/135 (57%), Gaps = 2/135 (1%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG Y D +LY+GK+ L+ R+KSY HS + ++ QI ++ +T + Sbjct: 12 LPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLE +I++ +P FNI L++ S+PYI IT+ K P + + YFGP+ Sbjct: 71 EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEVKRDGAHYFGPY 129 Query: 126 ASVDAVEKTINSLQR 140 + +T++ +++ Sbjct: 130 PGRFSARQTVDLIEK 144 >gi|169838012|ref|ZP_02871200.1| Excinuclease ABC subunit C [candidate division TM7 single-cell isolate TM7a] Length = 133 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 50/117 (42%), Positives = 77/117 (65%), Gaps = 2/117 (1%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIR 59 + + +P PGVY M + G+++YVGKA NLQ R+KSY + N+H + ++ I +I Sbjct: 18 VKYKDIPTNPGVYLMKNERGKIIYVGKAKNLQNRVKSYFTNINSHNQKTLELVKNIRDIE 77 Query: 60 FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST 116 F + +EVEAL+LE N+IK+ KP++NILL+D+K++PYI T K K P + R + Sbjct: 78 FFICKSEVEALILENNLIKKNKPKYNILLKDEKTYPYIKFT-KEKFPKVEIVRSTKN 133 >gi|253577599|ref|ZP_04854910.1| UvrABC system protein C [Paenibacillus sp. oral taxon 786 str. D14] gi|251843017|gb|EES71054.1| UvrABC system protein C [Paenibacillus sp. oral taxon 786 str. D14] Length = 363 Score = 181 bits (460), Expect = 3e-43, Method: Composition-based stats. Identities = 67/282 (23%), Positives = 123/282 (43%), Gaps = 2/282 (0%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRF 60 +P PGVY M D AG V+YVGK+ NLQ+R++SY H++ H + ++ + + ++ Sbjct: 9 QLRTLPAAPGVYLMKDAAGGVIYVGKSKNLQQRVRSYFHASRHRSKKVERLAHNVKDLEI 68 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-G 119 T TE EAL+LE +I+ LKP +N ++ + Y++I D I L Sbjct: 69 LRTDTEFEALMLECRLIRELKPMYNKKMKSPHGYVYLVIRDTDGIWDLEVVDVPEAPGIR 128 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 +GP+++ + R +C+ PCL + C G C G + E Sbjct: 129 QVYGPYSASRHSVEAAVRSVREALRIACSRPRSAPTGVPCLNHSLGLCLGACLGGEAVEL 188 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 ++ L G + +L+E++ M + + D+E+A RD L A+ + Sbjct: 189 NNCVMNRFAALLDGSDSSLREELEGRMRDFSERVDFEAAAKLRDALHAIDLFARQEEIAG 248 Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST 281 + + + + +F +N + ++ S+ Sbjct: 249 FVEQNGNFVVLERWSERKAKWFILRRNTILYSRKVEISEGSS 290 >gi|295395939|ref|ZP_06806124.1| nuclease subunit of the excinuclease complex [Brevibacterium mcbrellneri ATCC 49030] gi|294971212|gb|EFG47102.1| nuclease subunit of the excinuclease complex [Brevibacterium mcbrellneri ATCC 49030] Length = 560 Score = 181 bits (458), Expect = 4e-43, Method: Composition-based stats. Identities = 68/277 (24%), Positives = 115/277 (41%), Gaps = 2/277 (0%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY +D A RVLYVG + +++ R+ SY ++ R+ M++ +IR V Sbjct: 212 DVPHAPGVYMFVDGADRVLYVGSSRDMRSRVTSYFNAAESRGRMAEMVTAAQSIRVIVCP 271 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 TE+EA + E +I L+P +N L + ++ +T+ K P L R + Q GP Sbjct: 272 TELEARVREVRLIDELQPPYNRLSKGASRETWLKLTN-EKYPRLSIVRTPPSQQDLALGP 330 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184 F + + L+R + L+ C R RPC ++ +C GPC+G SE Y+ + Sbjct: 331 FRKNASARAAKDLLERIYPLKRCTAKPERADFRPCPAGEMGKCGGPCSGITRSEDYVRGI 390 Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-RMD 243 L G ++ Q ++E YE A RD ++ + + + + Sbjct: 391 APVVALLEGTPQAFVGHTMTHLKQLAVQERYEEAATARDVAISVLRAGSRGEQNGSVEKN 450 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSES 280 G T T+ + Sbjct: 451 EHLAAAMVTDHGFDVAIIRRGLLGATEHVPWGTNLQD 487 >gi|229820392|ref|YP_002881918.1| DNA polymerase III, epsilon subunit [Beutenbergia cavernae DSM 12333] gi|229566305|gb|ACQ80156.1| DNA polymerase III, epsilon subunit [Beutenbergia cavernae DSM 12333] Length = 590 Score = 180 bits (457), Expect = 5e-43, Method: Composition-based stats. Identities = 74/269 (27%), Positives = 114/269 (42%), Gaps = 7/269 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ +P PGVYQ L GRVLYVG A NL+ R++SY ++ RI M+ + V Sbjct: 226 ADGLPAAPGVYQFLGPQGRVLYVGTATNLRTRVRSYFTASEKRARIGEMLRIAERVHPIV 285 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD-SSTIQGSY 121 T +EA + E +I P +N R + P+I +T P L R+ + G+ Sbjct: 286 CATPLEAAVRELRLIAEHSPPYNRRSRAPEREPWIRLT-DEAYPRLSVVREVPRSHAGAA 344 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCA---DSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 GPF + + + +L F LR C+ V R PC+L ++ RC PC G I Sbjct: 345 IGPFRTRRLAQLALEALHGAFPLRQCSPRLPRVPRADASPCVLAELGRCGAPCVGRIDEP 404 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y V + + L+G + + + E YE A RDRL AL + Sbjct: 405 GYDTVVADVRAVLAGDVEPVVATVRSRIAALAGSERYEDAARERDRLTALLRGSARAARL 464 Query: 239 YNRMDCFSL--YHNKNLACIQTCFFHFGQ 265 D + + + +G+ Sbjct: 465 GGLADASHVLAARRTDDGGWELVCARYGR 493 >gi|325921648|ref|ZP_08183485.1| UvrC Helix-hairpin-helix [Xanthomonas gardneri ATCC 19865] gi|325547882|gb|EGD18899.1| UvrC Helix-hairpin-helix [Xanthomonas gardneri ATCC 19865] Length = 143 Score = 180 bits (457), Expect = 6e-43, Method: Composition-based stats. Identities = 51/125 (40%), Positives = 76/125 (60%), Gaps = 2/125 (1%) Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544 L +EN + ++ +AKG +R AG E + G L P L FIQ++RDEAHRFAIT Sbjct: 7 DLGIEN-VLLVGVAKGEERRAGHEALVMADGRELRPGAASPALQFIQQVRDEAHRFAITG 65 Query: 545 HRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 HR RR+KA S L++I GIGP R+ LL+ FG + + + +A ++G++ +A +I Sbjct: 66 HRGRRQKARMTSKLEDIPGIGPRRRASLLKHFGGLVGLKAAGEAEIARVDGVNAALAARI 125 Query: 604 YNHFH 608 Y + H Sbjct: 126 YANLH 130 >gi|168823338|ref|ZP_02835338.1| anaerobic glycerol-3-phosphate dehydrogenase subunit A [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205340448|gb|EDZ27212.1| anaerobic glycerol-3-phosphate dehydrogenase subunit A [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 364 Score = 180 bits (456), Expect = 7e-43, Method: Composition-based stats. Identities = 46/118 (38%), Positives = 72/118 (61%), Gaps = 2/118 (1%) Query: 489 ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRK 547 ++R ++ +AKG R AG+E F +GE L P L+ IQ +RDE+H AI HRK Sbjct: 242 KHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRK 301 Query: 548 RRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 +R K S L+ I G+GP R+++LL+ G ++ + +S E +A + GIS+ +A KI+ Sbjct: 302 KRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIF 359 >gi|54020325|ref|YP_115584.1| excinuclease ABC subunit C [Mycoplasma hyopneumoniae 232] gi|53987498|gb|AAV27699.1| excinuclease ABC subunit C [Mycoplasma hyopneumoniae 232] Length = 516 Score = 180 bits (456), Expect = 7e-43, Method: Composition-based stats. Identities = 93/539 (17%), Positives = 192/539 (35%), Gaps = 66/539 (12%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P GVY+ D +LYVGKA NL+ R+ Y ++++ +I + I++ + Sbjct: 13 LPNQVGVYRFYDEKNTLLYVGKAKNLKSRMNQYAKGATNSYKTEVLIRKTKEIKYDILQN 72 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPA---LYKHRDSSTIQGSYF 122 E EAL+LE +I + +P +NI L+DD+++PYI + + K+ R + ++ Sbjct: 73 ETEALILEKKIISKFQPIYNIKLKDDQNYPYIKLELEKKLNIELVYKISRSKKSKNIFFY 132 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF + + L+ + V L + C Sbjct: 133 GPFLNKSSALVLKKILENIVLYKKGQQIVQSEPE--ILNQKFFLCKKILQE--------- 181 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRD-----RLAALSHIQNHNDS 237 L + + +A +E A + + + ++ Sbjct: 182 -------------QKLISFCEQKLEKAKKNNQFELANEYHKALIALKKTKIEQQNIELNN 228 Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297 + N + +N I F+ G F + T ++L FL +Y Sbjct: 229 LKNIDFLYYSEIGENNLVISFAFYRNGVFLSNKNFIIDIILNYT--EVLINFLNNYYKIN 286 Query: 298 PCPENILL-SEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P+ +++ + + L+ + G +K + + N + +K+ Sbjct: 287 IYPDELVVKNFWPKNAEFLDPKINIKIGKSLKYKHILNTLAKNHQDFISHNFDQEIQKKI 346 Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416 + + K ++I D S++ ++ + +N R FN Sbjct: 347 KNQK-----ILGLVKASLKIENVEKIMAIDCSNLESNYPTTGIIFYINGIYERNYNRFFN 401 Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 + + + F + IKN + L PD++++DGG Q+ Sbjct: 402 YRGTKKGDTN-------YMRQGFEKYIKNPKFLK-------------PDLILVDGGIQQI 441 Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535 + +L+K + E I I + K + EK G+ + ++ +L F +++ Sbjct: 442 NLIIEILRKNHFE--IPIFGMVKNKRHKT--EKIIDLNGKKINVSQD--VLNFFALIQE 494 >gi|308811182|ref|XP_003082899.1| excinuclease ABC subunit B (ISS) [Ostreococcus tauri] gi|116054777|emb|CAL56854.1| excinuclease ABC subunit B (ISS) [Ostreococcus tauri] Length = 1294 Score = 179 bits (454), Expect = 1e-42, Method: Composition-based stats. Identities = 133/599 (22%), Positives = 222/599 (37%), Gaps = 101/599 (16%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN--NHTHRITHMISQINNIRFTV 62 MP GVY+ LD G+VLY+GKA NL+ R Y+ + R +++ + + Sbjct: 724 DMPAKTGVYRWLDADGKVLYIGKAKNLRSRTGHYLSPALIQASPRHRKLLASARTLDAVL 783 Query: 63 T-CTEVEALLLEANMIKRLKPRFNILLRDDKSFP-----YILITDKHKIPALYKHR---- 112 T E +AL LEA +I+R +P NILL+D P I++T K+ L+ R Sbjct: 784 TPGGEADALALEARLIQRERPALNILLKDA---PKPESARIVLTSKNSDGRLFIARFQNE 840 Query: 113 -DSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPC 171 D S ++ + P + +A +T+ L+R LR + FR R + + Sbjct: 841 FDPSKVERVWTLP--TREAAIRTMAFLERALDLRGVS---FRSRFGETAAIAQWKFAVDI 895 Query: 172 TGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHI 231 + KY + + + + E A + + +E+ E R LAAL Sbjct: 896 ASMVLDAKYDDAIAKLELHG--------ELAAALEIRVSAQEEAERGQGSRGSLAALLQA 947 Query: 232 QNHNDSIYNRMDCFSLYHNKNLACIQ-TCFFHFGQNRGTCTFFLKTDS--------ESTN 282 + + + MD + + C G + + E+T Sbjct: 948 DS--SAKHWNMDIIAAASSGGGTCAVKIVKVRDGVIVDVLGSSVDVPNATADDDIAEATL 1005 Query: 283 AQILSYFLRQFYTDKPC--PENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRK 339 A+ Q Y + P+ + + E L G + V G ++ Sbjct: 1006 AEAAQLVAEQMYASETSDRPDVVYIPHVVAEPVQLRAALKSLGIGGSSRSKVLHHGSAKE 1065 Query: 340 ------IIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGC 393 + + AL NA S S I+ AL PK IE D SH+ G Sbjct: 1066 GSLLQALADVALENADESARATASKSIAALR----LKDAIALSASPKSIEGVDVSHLAGQ 1121 Query: 394 SAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP 453 +AV V +++++ L V DD + + R S Sbjct: 1122 NAVTSFVRFEGGSPAPLKHKRYEL-SEAVTPSDDYGGIAESITARLS------------- 1167 Query: 454 KKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNV--------------------ENRIT 493 S + PDV+++DGG GQL+AA + + V + Sbjct: 1168 -----SKGALPDVLMIDGGAGQLTAAANAILEAGVVISNMVGEDDRPLDLANSKPRRTVA 1222 Query: 494 IISIAKGPKRSAGMEKFFV----KKGEALVLNMRDP---ILYFIQRLRDEAHRFAITTH 545 + ++AKG RS+G E ++ G + + + D L ++ +RD AH A+ H Sbjct: 1223 LCALAKG--RSSGEEALWIPALSPAGRCVGVRVDDAHVDALRLLRAVRDSAHAVALGAH 1279 >gi|289640817|ref|ZP_06472988.1| DNA polymerase III, epsilon subunit [Frankia symbiont of Datisca glomerata] gi|289509393|gb|EFD30321.1| DNA polymerase III, epsilon subunit [Frankia symbiont of Datisca glomerata] Length = 629 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 64/233 (27%), Positives = 105/233 (45%), Gaps = 3/233 (1%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ +P PGVY D R LYVG + +++ R++SY + R+T M++ + Sbjct: 287 ADDLPTGPGVYIFRDSTDRPLYVGTSRSVRARVRSYFTAGEPRQRMTAMVASAERVDAIA 346 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +EA + E +I KP +N R+ + Y+ IT P L + R ++ G+Y Sbjct: 347 CAHALEAQVREVRLIAEHKPPYNRRSRNPERAVYLKIT-DEPYPRLSRVR-AARDDGTYL 404 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 GPF S+ A + ++ LR CA R T C L ++ RC PC G S ++Y Sbjct: 405 GPFPSMAAADLAAAAIHEAIPLRQCATRLSPRRPTAACALVELGRCGAPCDGRESPQEYA 464 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234 V A ++ + + + ++ YE A + RDRL A H Sbjct: 465 RHVAAAVTAITADPQVVVDAARARIAALAAEQRYEDAAVVRDRLLAFLHASQR 517 >gi|258653407|ref|YP_003202563.1| hypothetical protein Namu_3243 [Nakamurella multipartita DSM 44233] gi|258556632|gb|ACV79574.1| DNA polymerase III, epsilon subunit [Nakamurella multipartita DSM 44233] Length = 613 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 58/236 (24%), Positives = 102/236 (43%), Gaps = 3/236 (1%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++++P PGVY VLYVG + NL +R++SY + + RI M++ + Sbjct: 243 ADRLPAAPGVYLFRGPREEVLYVGTSRNLAQRVRSYFTAAENRPRINQMVALAERVDHVE 302 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +EA + E +I +P +N R ++ +T P L R + Sbjct: 303 CAHALEAHIREQRLIAVHQPPYNRRSRRPGGVCWVTLT-DEAFPRLSIVRQPPRGSPACL 361 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSEKY 180 GPF + A + + +LQ +R C + RH PC+L ++ RC PC G Y Sbjct: 362 GPFPNRVAAQVAVEALQDVVPIRQCTTRIRRHSPDGTPCVLAELGRCGSPCDGRQDELSY 421 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 V + + G + L + + + + ++ A + RDRL+AL+ + Sbjct: 422 AREVARIVELVDGRSDQLLQLLRTRLLGLSADGRFDQAAVARDRLSALAAALDRRQ 477 >gi|269956792|ref|YP_003326581.1| DNA polymerase III subunit epsilon [Xylanimonas cellulosilytica DSM 15894] gi|269305473|gb|ACZ31023.1| DNA polymerase III, epsilon subunit [Xylanimonas cellulosilytica DSM 15894] Length = 584 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 6/232 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ +PE PGVY VLYVG + N++KR++SY + RIT M+ + + V Sbjct: 227 ADGLPEAPGVYLFKGPGDEVLYVGTSTNIRKRVRSYFTAAEKRRRITEMVRIAHEVTPVV 286 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +EA + E +I +PR+N + + ++ +T P L RD + Sbjct: 287 CATPLEAAVRELRLITEHEPRYNRRSKHPERHTWVRLT-DEPYPRLSVVRDV-RPGAPHI 344 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADS---VFRHRTRPCLLFQIKRCSGPCTGEI-SSE 178 GPF S + +++L LR C V R PC L + RCS PC + + Sbjct: 345 GPFGSRRVAQDAVDALHDALPLRQCTLRLAAVSRTPGSPCALAGMGRCSAPCVAVVAPDD 404 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH 230 Y A + L+G ++ + +A + + ++ +E A + RL A Sbjct: 405 AYAAVAKTAAEVLTGDPSSVVQALAARIGRLAAEQRFEEAGVVTGRLRAYVQ 456 >gi|312195665|ref|YP_004015726.1| DNA polymerase III epsilon subunit [Frankia sp. EuI1c] gi|311227001|gb|ADP79856.1| DNA polymerase III, epsilon subunit [Frankia sp. EuI1c] Length = 615 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 62/235 (26%), Positives = 102/235 (43%), Gaps = 2/235 (0%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ +P PGVY D GRVLYVGK+ +++ R+++Y ++ R+ M++ + Sbjct: 246 ADDLPTGPGVYIFRDATGRVLYVGKSASVRARVRTYFTASETRSRMAEMVAAAERVDAIA 305 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +EA + E +I KP +N R + ++ +T P L K R G+Y Sbjct: 306 CAHALEAEVRELRLIAEHKPPYNRRSRFPERVVFLRLT-DEPFPRLSKVRQVRADAGTYL 364 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP-CLLFQIKRCSGPCTGEISSEKYM 181 GPF V E + L LR C + T P C L + +C PC G S E Y Sbjct: 365 GPFGGVGGAELAGDGLLDAVALRRCGGRLSPRVTSPACALADLGKCGAPCDGRQSVESYG 424 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + V A++ ++G + + + +E A + RDR+ A Sbjct: 425 DVVAAAREAMTGDPALVVAAARARIAGLAEQTRFEEAALVRDRMVAFVRAAARQQ 479 >gi|255028308|ref|ZP_05300259.1| excinuclease ABC subunit C [Listeria monocytogenes LO28] Length = 135 Score = 177 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 45/121 (37%), Positives = 69/121 (57%), Gaps = 2/121 (1%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG Y D +LY+GK+ L+ R+KSY HS + ++ QI ++ +T + Sbjct: 12 LPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 E EALLLE +I++ +P FNI L++ S+PYI IT+ K P + + YFGP+ Sbjct: 71 EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEVKRDGAHYFGPY 129 Query: 126 A 126 Sbjct: 130 P 130 >gi|296129915|ref|YP_003637165.1| DNA polymerase III, epsilon subunit [Cellulomonas flavigena DSM 20109] gi|296021730|gb|ADG74966.1| DNA polymerase III, epsilon subunit [Cellulomonas flavigena DSM 20109] Length = 631 Score = 176 bits (447), Expect = 8e-42, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 103/232 (44%), Gaps = 6/232 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAY-NLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 ++ +P+ PGVY VLYVG + +L++R++SY S R+ M+ + Sbjct: 258 ADGLPDAPGVYLFRGPRDEVLYVGVSTTSLRRRVRSYFTSAEKRGRMQEMVRLAVRVDPV 317 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 V T +EA + E +I PR+N R + P++ +T P L R+ + Sbjct: 318 VCATPLEARVRELRLIAEHAPRYNRRSRAPERMPWVRLT-DEPFPRLSVVREVREGRAH- 375 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADS---VFRHRTRPCLLFQIKRCSGPCTGEISSE 178 GPFAS ++ +++L TF +R C V C+L ++ RC PCTG Sbjct: 376 IGPFASRALAQQAVDALHATFPVRQCTGRLPVVPSADAHACVLAEVGRCGAPCTGGQDVA 435 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH 230 Y + ++G ++ + A + +E +E A RDRL + Sbjct: 436 AYAPVAAAVRDAMTGDPRDVAQAHAVRIRTLAAQERFEEAATVRDRLTSYVR 487 >gi|111224492|ref|YP_715286.1| hypothetical protein FRAAL5108 [Frankia alni ACN14a] gi|111152024|emb|CAJ63748.1| putative DNA-directed DNA polymerase [Frankia alni ACN14a] Length = 580 Score = 176 bits (447), Expect = 8e-42, Method: Composition-based stats. Identities = 60/233 (25%), Positives = 104/233 (44%), Gaps = 3/233 (1%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ +P PGVY D GR LYVG + +++ R+++Y ++ R+ M++ + Sbjct: 215 ADGLPTGPGVYIFRDADGRALYVGTSRSVRSRVRTYFTASEPRTRMAEMVALAERVDAIG 274 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +EA + E +I KP +N R + Y+ +T P L + R ++ + +Y Sbjct: 275 CAHALEAEVRELRLIAEHKPPYNRRSRFPERTVYLKLT-DEPFPRLSRVR-AARDEATYL 332 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP-CLLFQIKRCSGPCTGEISSEKYM 181 GPFAS + ++L LR C + RP C L + RC PC G Y Sbjct: 333 GPFASTRGADDAADALLAAVPLRQCTGRLSPRARRPACALADLGRCGAPCDGREDVAAYA 392 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234 V A+ ++G + R +++ + YE A +HRDR+ + Sbjct: 393 RHVAAARAAITGDPGPVIAASTRRIDRLAGERRYEEAAVHRDRMVSFVRAAAR 445 >gi|329121129|ref|ZP_08249760.1| excinuclease ABC subunit C [Dialister micraerophilus DSM 19965] gi|327471291|gb|EGF16745.1| excinuclease ABC subunit C [Dialister micraerophilus DSM 19965] Length = 188 Score = 176 bits (447), Expect = 9e-42, Method: Composition-based stats. Identities = 47/104 (45%), Positives = 72/104 (69%), Gaps = 1/104 (0%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 E +P PGVY+ D G+V+YVGKA NL+ R+KSY+ ++ N + ++ MI ++ Sbjct: 11 KLENLPSSPGVYRWKDKNGKVIYVGKAVNLKNRVKSYVRNDKNKSPKVISMIKHAEDLDI 70 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHK 104 T+T E+EAL+LE N+IK L+P++NI LRDDK++PY+ +T K Sbjct: 71 TITKNELEALILECNLIKELQPKYNISLRDDKTYPYLKVTVNEK 114 >gi|213616217|ref|ZP_03372043.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 356 Score = 176 bits (446), Expect = 9e-42, Method: Composition-based stats. Identities = 104/356 (29%), Positives = 176/356 (49%), Gaps = 11/356 (3%) Query: 96 YILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR 155 Y ++ P L HR + +G YFGPF + AV +T+ LQ+ F +R C +SV+R+R Sbjct: 5 YFFLS-GDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR 63 Query: 156 TRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKED 214 +RPCL +QI RC GPC +S E+Y + V + FLSG + + ++ M +A+ Sbjct: 64 SRPCLQYQIGRCLGPCVAGLVSEEEYTQQVEYVRLFLSGKDDQVLTQLIARMEKASQDLA 123 Query: 215 YESAIIHRDRLAALSHIQNHNDSIY--NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTF 272 +E A RD++ A+ + + +D + + +AC+ F G+ G+ ++ Sbjct: 124 FEEAARIRDQIQAVRRVTEKQFVSNAGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSY 183 Query: 273 FLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSEEAEETSLLEISFFKQYGYKVK 328 F K + +++ F+ QFY + P ILL + +LL S + G ++ Sbjct: 184 FPKVPGGTELGEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRRIH 243 Query: 329 ITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNS 388 + +G++ + ++ A NA + KLS + + L LP I R+E +D S Sbjct: 244 VQTKPRGDRARYLKLARTNAATALVTKLSQQSTITQRLTALATVLKLPAIK-RMECFDIS 302 Query: 389 HIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIK 444 H MG V VV NG ++ +YR++N+ + DD A M VL RR+ + I+ Sbjct: 303 HTMGEQTVASCVVFDANGPLRAEYRRYNI--AGITPGDDYAAMNQVLRRRYGKAIE 356 >gi|297184003|gb|ADI20123.1| nuclease subunit of the excinuclease complex [uncultured alpha proteobacterium EB080_L06A09] Length = 139 Score = 176 bits (445), Expect = 2e-41, Method: Composition-based stats. Identities = 57/116 (49%), Positives = 79/116 (68%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+ML+ G VLYVGKA NL++R+ +Y H+ RI MIS +++ F Sbjct: 23 LKTLDGSPGVYRMLNQDGEVLYVGKARNLKRRVSNYAKLTGHSARIGRMISNTSSMMFLT 82 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118 T TE EALLLE N+IK+LKPR+N+LLRDDKSFP I+I+ + P + KHR + + Sbjct: 83 TQTETEALLLEQNLIKQLKPRYNVLLRDDKSFPNIMISRALEFPKIAKHRGRRSKR 138 >gi|257055123|ref|YP_003132955.1| hypothetical protein Svir_10720 [Saccharomonospora viridis DSM 43017] gi|256584995|gb|ACU96128.1| exonuclease, DNA polymerase III, epsilon subunit family [Saccharomonospora viridis DSM 43017] Length = 570 Score = 174 bits (442), Expect = 3e-41, Method: Composition-based stats. Identities = 54/234 (23%), Positives = 99/234 (42%), Gaps = 6/234 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PGVY + VLYVG A NL++R++ Y ++++ RI M++ + Sbjct: 213 HLPERPGVYLFRGPSDEVLYVGTARNLRRRVRQYFTASDNRGRIREMVALAERVDAVECS 272 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +EA + E ++ +P +N R+ ++++T P L R GP Sbjct: 273 HALEAAVRELRLLAAYRPPYNRRSRNPSKVWWVVLT-DEPFPRLSVVRQP-RDGA--LGP 328 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSEKYME 182 F S ++ ++L LR+C + C+L ++ C PC G ++E Y Sbjct: 329 FTSRNSARAVADTLADLARLRTCTRRIPATGAAGPSCVLAELGSCGAPCIGAQTAEDYRL 388 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 V + G + L + ++ + + +E A RD L A+ + Sbjct: 389 SVRLVSDLIDGVDTALLRRGHEQLDALSAIQHFERAARRRDELVAVLRAVDKRH 442 >gi|288922213|ref|ZP_06416412.1| DNA polymerase III, epsilon subunit [Frankia sp. EUN1f] gi|288346447|gb|EFC80777.1| DNA polymerase III, epsilon subunit [Frankia sp. EUN1f] Length = 565 Score = 174 bits (442), Expect = 3e-41, Method: Composition-based stats. Identities = 64/235 (27%), Positives = 107/235 (45%), Gaps = 3/235 (1%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ +P PGVY D A R LYVG + +++ R+++Y ++ R+ M++ + Sbjct: 223 ADDLPTGPGVYVFRDGADRPLYVGTSRSVRSRVRTYFTASEPRSRMAQMVALAERVDAIG 282 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +EA + E +I KP FN R + Y+ +T P L + R +Y Sbjct: 283 CAHALEAEVRELRLIAEHKPPFNRRSRHPERAVYLRLT-DELFPRLSRVRSVG-DGVTYL 340 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEKYM 181 GPF S A ++ +L LR C+ + R T C L ++ RC PC G +Y Sbjct: 341 GPFGSTQAAQEAEIALLAAVPLRQCSARLSPSRPTAACALAELGRCGAPCDGRQGVAEYA 400 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 E V A++ +SG ++E + ++ + ++ YE A RDRLA Sbjct: 401 EVVGAAREAMSGDPGAVQESLEAHIARLAAEQRYEQAAEVRDRLAGYLRTAARRQ 455 >gi|284991755|ref|YP_003410309.1| DNA polymerase III subunit epsilon [Geodermatophilus obscurus DSM 43160] gi|284065000|gb|ADB75938.1| DNA polymerase III, epsilon subunit [Geodermatophilus obscurus DSM 43160] Length = 609 Score = 174 bits (442), Expect = 3e-41, Method: Composition-based stats. Identities = 60/235 (25%), Positives = 99/235 (42%), Gaps = 2/235 (0%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ +P PGVY LYVG + +L+ R++SY + R+T M++ + Sbjct: 233 ADAVPHGPGVYLFRGPRDEPLYVGTSTDLRSRVRSYFTAGEQRSRMTEMVALSQRVDAIP 292 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 ++EA + E +I KPR+N R + ++ +T + P L R G + Sbjct: 293 CAHDLEAAVRELRLIAEHKPRYNRRSRFPERALWVRLT-EEPFPRLSVVRRVRPGAGVFL 351 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 GPF A + + ++ + LR C R C L + RC PCTG S E+Y Sbjct: 352 GPFPDRRAADAAVAAVHESLPLRQCTGRLSVRVLGTACALAGMGRCGAPCTGAQSVEEYG 411 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + ++ H L + + + +E YE A + RDR A L Sbjct: 412 GIAAVLRTAVAADPHALLAPLLARVERLAAEERYEDAAVLRDRAATLVRAVRRRQ 466 >gi|323948206|gb|EGB44194.1| GIY-YIG catalytic domain-containing protein [Escherichia coli H120] Length = 109 Score = 174 bits (440), Expect = 5e-41, Method: Composition-based stats. Identities = 48/94 (51%), Positives = 65/94 (69%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPY 96 T TE EALLLE N IK +PR+N+LLRDDKS+P+ Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPF 104 >gi|145595801|ref|YP_001160098.1| hypothetical protein Strop_3286 [Salinispora tropica CNB-440] gi|145305138|gb|ABP55720.1| DNA polymerase III, epsilon subunit [Salinispora tropica CNB-440] Length = 607 Score = 174 bits (440), Expect = 5e-41, Method: Composition-based stats. Identities = 53/236 (22%), Positives = 95/236 (40%), Gaps = 3/236 (1%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 +E +P PGVY R LYVG + ++ R++SY + RI+ M++ + Sbjct: 249 AEGLPHSPGVYLFRGADNRPLYVGTSIDIATRVRSYFTAAEKRARISEMLAAAERVEAVE 308 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +EA + E +I P +N + + ++ +T P L R+ + +Y Sbjct: 309 CAHSLEAEVRELRLIGTHAPPYNRRSKFPERVVWLKLT-DEAYPRLSVVRNLAPGDEAYL 367 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP-CLLFQIKRCSGPCTGEISSEKYM 181 GPF S A E LR C + + P C + ++ RC PC I+ +Y Sbjct: 368 GPFTSRRAAELAAAGFHDAMPLRQCTHRLSVRKVTPACAVAELGRCPAPCEHRITPTEYA 427 Query: 182 EFVHEAKKFLSGGNHN-LKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + + G + + + + + + + YE A + R RL A+ Sbjct: 428 DRATTPFRRACGDDPQGVVDALLGRIETLSAGQRYEEAAVVRSRLTAVLRAITRMQ 483 >gi|159039058|ref|YP_001538311.1| hypothetical protein Sare_3518 [Salinispora arenicola CNS-205] gi|157917893|gb|ABV99320.1| DNA polymerase III, epsilon subunit [Salinispora arenicola CNS-205] Length = 585 Score = 173 bits (438), Expect = 9e-41, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 93/236 (39%), Gaps = 3/236 (1%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 +E +P PGVY R LYVG + ++ R++SY + RI+ M++ + Sbjct: 227 AEGLPRTPGVYLFRGADDRPLYVGTSVDIATRVRSYFTAAEKRARISEMLAAAVRVEAVE 286 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +EA + E +I P +N + + ++ +T P L R + +Y Sbjct: 287 CAHSLEAEVRELRLIGAHAPPYNRRSKFPERVVWLKLT-DEAYPRLSVVRKLTPGDEAYL 345 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP-CLLFQIKRCSGPCTGEISSEKY- 180 GPF S A E LR C + P C L ++ RC PC I+ ++Y Sbjct: 346 GPFTSRRAAELAAAGFHDAMPLRQCTHRLSVRTVTPACALAELGRCPAPCEHRITPDEYA 405 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 V + G + + + + + + YE A + R RL A+ Sbjct: 406 NRAVTPFRTACRGDPQGVVDALLGRIETLSTGQRYEEAAVVRSRLTAVLRATTRMQ 461 >gi|300784117|ref|YP_003764408.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei U32] gi|299793631|gb|ADJ44006.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei U32] Length = 567 Score = 172 bits (435), Expect = 2e-40, Method: Composition-based stats. Identities = 59/232 (25%), Positives = 95/232 (40%), Gaps = 6/232 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY VLYVG A +L++R+++Y + + RI M++ + V Sbjct: 218 DLPSAPGVYLFKGPKDEVLYVGTAKDLRRRVRTYFTGSENRSRIREMVALAERVDHVVCA 277 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +EA + E +I +P +N ++ +I +T P L R GP Sbjct: 278 HALEAEVRELRLIAAHRPAYNRRSKNRHQGWWIGLT-DEAFPRLSVVRLPRPG---VLGP 333 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSEKYME 182 F + T ++L LR+C + PC+L ++ RC PC G S +Y Sbjct: 334 FRNQADARTTADTLAGASGLRTCTQRISPRSANGTPCVLAELGRCGAPCAGRQSVAEYGP 393 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234 V ++G + A ++ + YE A HRD LA L Sbjct: 394 AVESVSGLIAGLDGGPLHTAAAHVERLAEGRHYEQAARHRDELAGLIRALGR 445 >gi|86741790|ref|YP_482190.1| hypothetical protein Francci3_3104 [Frankia sp. CcI3] gi|86568652|gb|ABD12461.1| DNA polymerase III, epsilon subunit [Frankia sp. CcI3] Length = 584 Score = 171 bits (434), Expect = 3e-40, Method: Composition-based stats. Identities = 60/233 (25%), Positives = 101/233 (43%), Gaps = 3/233 (1%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ +P PGVY D R LYVG + +++ R+++Y ++ R+ M++ + Sbjct: 224 ADGLPTGPGVYIFRDADERALYVGTSRSVRSRVRTYFTASEPRTRMAAMVALAERVDAIG 283 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +EA + E +I KP +N R + Y+ +T P L + R ++ +Y Sbjct: 284 CAHALEAEVRELRLIAEYKPPYNRRSRFPERSVYLKLT-DEPFPRLSRVR-AARDDATYL 341 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 GPF SV A + +L LR C+ R R C L + RC PC G Y Sbjct: 342 GPFGSVRAADAAAEALLAAVPLRQCSGRLSPRVRRSACTLADLGRCGAPCDGREDVASYG 401 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234 V A+ ++G + R +++ + YE A + RDR+ A Sbjct: 402 RHVAAARAAITGDPGRVIAASTRRIDRLAAERRYEEAAVQRDRMIAFVRAAAR 454 >gi|297562082|ref|YP_003681056.1| DNA polymerase III subunit epsilon [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846530|gb|ADH68550.1| DNA polymerase III, epsilon subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 595 Score = 171 bits (433), Expect = 3e-40, Method: Composition-based stats. Identities = 68/251 (27%), Positives = 107/251 (42%), Gaps = 24/251 (9%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 +E +PE PGVY D G LYVGK+ NL++R+++Y + RI M + + V Sbjct: 223 AEDLPEEPGVYVFTDARGESLYVGKSKNLRRRVRTYFTAAESRQRIREMAGLVAGVTPIV 282 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +E+EA + E +I KP +N R+ + ++ +T P L R S ++ Sbjct: 283 CSSELEASVRELRIIAERKPPYNRRSRNPERASWVRLT-ADAFPRLSVVRAVSGDGAAHI 341 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-----------------------TRPC 159 GP+AS E+ +L F LR CA + + T PC Sbjct: 342 GPYASPREAERAREALLHVFPLRQCAHTFRPPKAVAGGSGGGTRVAPQVVTSGARWTGPC 401 Query: 160 LLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAI 219 ++ Q+ RC PC G S +Y A+ ++G + + + + YE A Sbjct: 402 VVAQLGRCGAPCDGSESEAEYAVHAEAARVAMTGDPAAVVDAYTARIGELAADLRYEEAA 461 Query: 220 IHRDRLAALSH 230 RDRL A Sbjct: 462 HLRDRLTAFLR 472 >gi|330469366|ref|YP_004407109.1| hypothetical protein VAB18032_27181 [Verrucosispora maris AB-18-032] gi|328812337|gb|AEB46509.1| hypothetical protein VAB18032_27181 [Verrucosispora maris AB-18-032] Length = 584 Score = 171 bits (432), Expect = 4e-40, Method: Composition-based stats. Identities = 71/363 (19%), Positives = 124/363 (34%), Gaps = 8/363 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ +P PGVY R LYVG + ++ R++SY + RI+ M++ + Sbjct: 226 ADGLPRSPGVYIFRAADDRPLYVGTSRDIATRVRSYFTAAEKRARISEMLAAAERVEALE 285 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +EA + E +I P +N + + ++ +TD P L R+ S +Y Sbjct: 286 CAHSLEAEVRELRLIGAHAPPYNRRSKYPERVVWLKLTDG-PYPRLSVVREISPDDRAYL 344 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 GPF+S A E LR C R T C L ++ RC PC I+ ++Y Sbjct: 345 GPFSSRRAAELAAAGFHDAVPLRQCTHRLSLRTVTPACALAELGRCLAPCEHRITPQEYD 404 Query: 182 EFVHEAKKFL-SGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND--SI 238 +G + + + + + YE A + R RLAA+ + Sbjct: 405 AVAVTPFAEATTGDVKPVVDALLARIEALAAGQRYEEAAVLRSRLAAVLRATVRMQRLAA 464 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 + + + G+ G T A + + P Sbjct: 465 LTGIAEVAAARPAEHGGWELALVRHGRLAGAGVSPPGVHPRPTLATMRATAETVSAGHGP 524 Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 P E E L + + ++ L A + + +L + Sbjct: 525 VPAAT---PEESERILSWLERPETRLVEMSAGWASPVSGAGRFRDLLTKAENAASHQLWS 581 Query: 359 EIS 361 E S Sbjct: 582 ERS 584 >gi|218507012|ref|ZP_03504890.1| excinuclease ABC subunit C [Rhizobium etli Brasil 5] Length = 204 Score = 171 bits (432), Expect = 4e-40, Method: Composition-based stats. Identities = 96/201 (47%), Positives = 128/201 (63%), Gaps = 8/201 (3%) Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411 +KL+ S +L+ F + F L + P+RIEIYDNSHIMG +AVG MVV G GFVKNQ Sbjct: 1 MGRKLAETASQSRLLEGFKETFGLAYAPQRIEIYDNSHIMGTNAVGGMVVAGPEGFVKNQ 60 Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS-----FPSWPDV 466 YRKFN+ D+ DD MM+ V+ RRFS+LIK E + + FP+WPDV Sbjct: 61 YRKFNIKSTDITPGDDFGMMKEVMTRRFSRLIKEEGIPDRTAQATATDAADMPFPAWPDV 120 Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526 +++DGG+GQ++A + +L +L + + + I IAKG R AG E+FF E+ L RDP+ Sbjct: 121 ILIDGGQGQMTAVRAILAELGITDSVMAIGIAKGVDRDAGRERFFPPGRESFTLPPRDPV 180 Query: 527 LYFIQRLRDEAH---RFAITT 544 LYFIQR+RDEAH R A T Sbjct: 181 LYFIQRMRDEAHSLSRLARTG 201 >gi|302525360|ref|ZP_07277702.1| DNA-directed DNA polymerase [Streptomyces sp. AA4] gi|302434255|gb|EFL06071.1| DNA-directed DNA polymerase [Streptomyces sp. AA4] Length = 572 Score = 171 bits (432), Expect = 4e-40, Method: Composition-based stats. Identities = 58/232 (25%), Positives = 94/232 (40%), Gaps = 6/232 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY VLYVG A +L++R+++Y + RI M++ + Sbjct: 222 DLPSRPGVYLFKGPRDEVLYVGTARDLRRRVRTYFTGSESRGRIREMVALAERVDAIECA 281 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +EA + E +I +P +N ++ +I +T P L R GP Sbjct: 282 HSLEAEIRELRLIAAHRPAYNRRSKNPHHGWWISLT-DEAFPRLSVVRLPR---AGTLGP 337 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSEKYME 182 F S +L LR+C + PC+L ++ RC PC G + +Y Sbjct: 338 FRSQADARTAAETLADASGLRTCTQRISATSASGTPCVLAELGRCGAPCAGRQTVAEYSP 397 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234 V A+ ++G + A + + + + YE A HRD LA L Sbjct: 398 AVDAARGLIAGHDGRPLHLAAARLEEMSARRHYEQAARHRDELAGLVRAVGR 449 >gi|226324329|ref|ZP_03799847.1| hypothetical protein COPCOM_02110 [Coprococcus comes ATCC 27758] gi|225206777|gb|EEG89131.1| hypothetical protein COPCOM_02110 [Coprococcus comes ATCC 27758] Length = 152 Score = 171 bits (432), Expect = 4e-40, Method: Composition-based stats. Identities = 46/147 (31%), Positives = 76/147 (51%), Gaps = 6/147 (4%) Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPIL 527 ++DGGKGQ++ A VL +L++ I + + K + + ++ Sbjct: 1 MMDGGKGQVNIALEVLDELHIS--IPVCGMVKDDHHRTRG---LYYQNIEIPIDHNSEGF 55 Query: 528 YFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586 I R++DEAHRFAI HRK R + +S LD+I GIGP R++ L+++F ++ I + Sbjct: 56 RLITRVQDEAHRFAIEFHRKLRSQGQVHSILDDIPGIGPARRKALMRTFASLDEIKNAEV 115 Query: 587 ETLASIEGISKKIACKIYNHFHKNTSH 613 E L I + +K A +YN F + Sbjct: 116 EDLKKIPSMDEKSAKNVYNFFRGSEKE 142 >gi|226360268|ref|YP_002778046.1| hypothetical protein ROP_08540 [Rhodococcus opacus B4] gi|226238753|dbj|BAH49101.1| putative DNA polymerase III epsilon subunit [Rhodococcus opacus B4] Length = 588 Score = 170 bits (431), Expect = 5e-40, Method: Composition-based stats. Identities = 52/236 (22%), Positives = 91/236 (38%), Gaps = 6/236 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PGVY + VLYVG A +L++R+++Y + R+ M++ I Sbjct: 218 ASHLPHAPGVYLFRGPSDEVLYVGTATDLRRRVRNYFTGSETRGRMKEMVALTTRIDHVE 277 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +EA + E ++ P +N + K +I +T P L R + Sbjct: 278 CAHALEAGVRELRLLAAHTPPYNRRSKYPKRGWWITLT-AEAFPRLSVVRTPAADS---L 333 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP--CLLFQIKRCSGPCTGEISSEKY 180 GPF S + L LR+C + + R C ++ RC G + + Y Sbjct: 334 GPFRSRSTAVDVADVLAEYCILRTCTSRIPKGREHGAQCPPRELGRCPASVHGRNTEDAY 393 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + FL G + ++ + + E +E+A RDR A + Sbjct: 394 RPGPELFRLFLRGADDAPLHRMRARVEELAAGELFENAARLRDRTAEVVLALRRMQ 449 >gi|314929290|gb|EFS93121.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL044PA1] Length = 597 Score = 170 bits (431), Expect = 5e-40, Method: Composition-based stats. Identities = 77/381 (20%), Positives = 139/381 (36%), Gaps = 15/381 (3%) Query: 3 SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57 ++ +PE PGVY LD VLYVGK+ N+++R+ Y ++ R+ M+ Sbjct: 225 AKDLPEGPGVYWFCLDKPAPAQPEVLYVGKSVNIRRRVSQYFTTSETRRRMDEMVRIATG 284 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117 ++ T +EA + E +I +PR+N R ++ +T P R + Sbjct: 285 VKARECSTRLEAGVRELRLIDAHQPRYNRRSRRQGLVWWVTLT-SEAHPRPSVVRRADRG 343 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 +GPF S A + + F LR C+ ++ RH C L ++ RCS PC Sbjct: 344 SQPLWGPFTSRRAATRAAIVVAEAFGLRQCSGALLRHPDG-CPLAEMGRCSAPC--LDPD 400 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 Y V + ++G +L + +A+ + Q + E +E A + + Sbjct: 401 VDYSTIVDRVRLAMTGDVRDLTDLLAKRIAQLSTAERFEEAAEFTNDAKEVLRATRRRSR 460 Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + + C + ++ A + G+ G L TD + + Sbjct: 461 LVSLASCPQIVAARRDGAFWEIHVIRHGRLAGAGRCRLGTDPMPVIGAVCATA-----ES 515 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P + L + EE L+ F + V I + + A + Sbjct: 516 VCPPPSGLPACTIEEAELVASWFEEPGVRLVDIIGEWSWPAHCWMGTYDLAARVAALHHP 575 Query: 357 STEISHQMILKDFTKKFALPH 377 S + +D + L Sbjct: 576 GHNESDKTDGQDRQTRSQLAP 596 >gi|313837498|gb|EFS75212.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA2] gi|314971705|gb|EFT15803.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA3] gi|328906955|gb|EGG26721.1| GIY-YIG catalytic domain protein [Propionibacterium sp. P08] Length = 598 Score = 170 bits (431), Expect = 5e-40, Method: Composition-based stats. Identities = 77/381 (20%), Positives = 139/381 (36%), Gaps = 15/381 (3%) Query: 3 SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57 ++ +PE PGVY LD VLYVGK+ N+++R+ Y ++ R+ M+ Sbjct: 226 AKDLPEGPGVYWFCLDKPAPAQPEVLYVGKSVNIRRRVSQYFTTSETRRRMDEMVRIATG 285 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117 ++ T +EA + E +I +PR+N R ++ +T P R + Sbjct: 286 VKARECSTRLEAGVRELRLIDAHQPRYNRRSRRQGLVWWVTLT-SEAHPRPSVVRRADRG 344 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 +GPF S A + + F LR C+ ++ RH C L ++ RCS PC Sbjct: 345 SQPLWGPFTSRRAATRAAIVVAEAFGLRQCSGALLRHPDG-CPLAEMGRCSAPC--LDPD 401 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 Y V + ++G +L + +A+ + Q + E +E A + + Sbjct: 402 VDYSTIVDRVRLAMTGDVRDLTDLLAKRIAQLSTAERFEEAAEFTNDAKEVLRATRRRSR 461 Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + + C + ++ A + G+ G L TD + + Sbjct: 462 LVSLASCPQIVAARRDGAFWEIHVIRHGRLAGAGRCRLGTDPMPVIGAVCATA-----ES 516 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P + L + EE L+ F + V I + + A + Sbjct: 517 VCPPPSGLPACTIEEAELVASWFEEPGVRLVDIIGEWSWPAHCWMGTYDLAARVAALHHP 576 Query: 357 STEISHQMILKDFTKKFALPH 377 S + +D + L Sbjct: 577 GHNESDKTDGQDRQTRSQLAP 597 >gi|296140382|ref|YP_003647625.1| DNA polymerase III subunit epsilon [Tsukamurella paurometabola DSM 20162] gi|296028516|gb|ADG79286.1| DNA polymerase III, epsilon subunit [Tsukamurella paurometabola DSM 20162] Length = 610 Score = 169 bits (429), Expect = 9e-40, Method: Composition-based stats. Identities = 61/270 (22%), Positives = 100/270 (37%), Gaps = 9/270 (3%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ +PE PGVY VLYVG + NL++R++SY S RI M+ + Sbjct: 217 ADPLPERPGVYLFRGPGDEVLYVGTSRNLRRRVRSYFTSGETRGRIKEMVGLAERVDHVE 276 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +EA E +I P +N + K +I +T P L R + Sbjct: 277 CAHALEAAARELRLIAAHTPPYNRRSKYPKRGWWICLTV-EPFPRLAVKRSAPA-GSVCL 334 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLL-----FQIKRCSGPCTGEISS 177 GP S + + T LR+C + C L + C G + + Sbjct: 335 GPIRSRTEAADLADLIAETCGLRTCTTRLRPGGAHACALGPDGTRPVGGCHGSVSAPEPA 394 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 Y A L+G + + + + ++ +E +ESA RDR A L I + S Sbjct: 395 SLYRPRADRAAAMLTGRSSAVFDALQARLDSLVEREFFESAARLRDRTAQLVDITLRSHS 454 Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQ 265 + + S+ H + G+ Sbjct: 455 LAAFAEVPELSIAHPDGAGGWELSIVRHGR 484 >gi|164688403|ref|ZP_02212431.1| hypothetical protein CLOBAR_02048 [Clostridium bartlettii DSM 16795] gi|164602816|gb|EDQ96281.1| hypothetical protein CLOBAR_02048 [Clostridium bartlettii DSM 16795] Length = 351 Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats. Identities = 75/315 (23%), Positives = 134/315 (42%), Gaps = 12/315 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVT 63 +PE PG+Y M D R+LYVGK+ L+KR+KSY +S N + +I MI I++I T Sbjct: 32 NLPEEPGIYFMKDKEDRLLYVGKSKCLKKRVKSYFLNSTNRSRKIERMIKNISHIDIIKT 91 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 TE +AL LE I RLKP +N LL+ + + YI + K + K + G YFG Sbjct: 92 DTEFDALFLECQNIHRLKPMYNTLLKSYEKYKYICL--DEKDHNIIKISNEIEEDGIYFG 149 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 P++ ++ + + + L C R C+ + + +C GPC +I + Sbjct: 150 PYSFKRKLDIIKEIIIKVYRLPIC------KRQNKCIRYDLDKCIGPCRKQIDDNIKHDI 203 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD 243 V K L+G ++ + E + + MN +E A + + S I + N Sbjct: 204 VKNIKDNLNGKSNFVIESLNKEMNAKAKDLKFEEAAKIKGEIDLFSSIVRKQKYLQNLNR 263 Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303 + N + + + + + + + L ++ ++ Sbjct: 264 DIVFWINMKNYKYKVYYIRCAKIKYEKVIDARYP---SQIENLKTSIQDLIVQNKEEKDA 320 Query: 304 LLSEEAEETSLLEIS 318 L +E + +++ Sbjct: 321 LRKDEIDYINIINEY 335 >gi|111018139|ref|YP_701111.1| hypothetical protein RHA1_ro01126 [Rhodococcus jostii RHA1] gi|110817669|gb|ABG92953.1| DNA-directed DNA polymerase [Rhodococcus jostii RHA1] Length = 588 Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats. Identities = 50/234 (21%), Positives = 89/234 (38%), Gaps = 6/234 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY + VLYVG A +L++R+++Y + R+ M++ I Sbjct: 220 HLPHAPGVYLFRGPSDEVLYVGTATDLRRRVRNYFTGSETRGRMKEMVALTTRIDHVECA 279 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +EA + E ++ P +N + K +I +T P L R + GP Sbjct: 280 HALEAGVRELRLLAAHTPPYNRRSKYPKRGWWITLTV-EAFPRLSVVRTPTADS---LGP 335 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP--CLLFQIKRCSGPCTGEISSEKYME 182 F S + L LR+C + + R C ++ C + + Y Sbjct: 336 FRSRSTAVDLADVLAEYCILRTCTSRIPKGREHGPQCPPRELAGCPASVHDRATEDAYRP 395 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 ++FL G + ++ + + E +E+A RDR A + Sbjct: 396 GPELFRQFLRGLDDAPLHRMRAQVEELAAGELFENAARLRDRTAEVVLALRRMQ 449 >gi|213618593|ref|ZP_03372419.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 102 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 47/92 (51%), Positives = 64/92 (69%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI +I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSF 94 T TE EALLLE N IK +PR+N+LLRDDKS+ Sbjct: 71 THTETEALLLEHNYIKLYQPRYNVLLRDDKSY 102 >gi|158313649|ref|YP_001506157.1| hypothetical protein Franean1_1813 [Frankia sp. EAN1pec] gi|158109054|gb|ABW11251.1| DNA polymerase III, epsilon subunit [Frankia sp. EAN1pec] Length = 603 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 61/235 (25%), Positives = 102/235 (43%), Gaps = 3/235 (1%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ +P PGVY D GR LYVG + +++ R+++Y ++ R+ M++ + Sbjct: 223 ADDLPTGPGVYVFRDGTGRPLYVGTSRSVRSRVRTYFTASEPRTRMAEMVAIAERVDAIE 282 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +EA + E +I KP +N R + Y+ +T P L + R + Sbjct: 283 CAHALEAEVRELRLIAEYKPPYNRRSRFPERAVYLRLT-DEPFPRLSRVRSVG-DGVTSL 340 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 GPF S A E +L LR C+ R T C L ++ RC PC G +Y Sbjct: 341 GPFGSAAAAESAATALLEAIPLRQCSTRLSPRRPTAACALAELGRCGAPCDGREGVAEYG 400 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + V A+ ++ + + + R + + + + YE A RDRLAA Sbjct: 401 QHVATARGAMTADPRPVVDVLERRIARLSADQRYEEAAGVRDRLAAYVRAVARMQ 455 >gi|256375516|ref|YP_003099176.1| hypothetical protein Amir_1378 [Actinosynnema mirum DSM 43827] gi|255919819|gb|ACU35330.1| DNA polymerase III, epsilon subunit [Actinosynnema mirum DSM 43827] Length = 578 Score = 168 bits (425), Expect = 3e-39, Method: Composition-based stats. Identities = 63/265 (23%), Positives = 110/265 (41%), Gaps = 7/265 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY + VLYVG A +L++R++ Y ++ HR+ M++ + + Sbjct: 227 DLPSAPGVYLFRGPSEEVLYVGTASDLRRRVRQYFTASETRHRLREMVALAVRVDWVECA 286 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +EA + E +I +P +N ++ S+ ++ +T P L R + GP Sbjct: 287 HPLEAQVRELRLIAAHRPAYNRRSKNTASW-WLALT-DEAFPRLSVVRTAREGA---LGP 341 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSEKYME 182 F + A + +L LR+CA + PC L ++ RC PC G + Y + Sbjct: 342 FPTRRAADAAAEALLEAVPLRACAQRIPARGASGTPCALLEMGRCKAPCAGLQEVDDYAD 401 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242 V A+ ++G + A + + L+E +E A + RDRLA L + + Sbjct: 402 AVARARALIAGESTEALGGAAARLGELALEERFEEAALRRDRLAGLVRALDRGQRLAALA 461 Query: 243 DCFSLYHNKNLACIQTCFFHFGQNR 267 L + F R Sbjct: 462 AVEELVAARPDGAGGWWFAVVRHGR 486 >gi|255027104|ref|ZP_05299090.1| hypothetical protein LmonocytFSL_13633 [Listeria monocytogenes FSL J2-003] Length = 305 Score = 168 bits (425), Expect = 3e-39, Method: Composition-based stats. Identities = 84/309 (27%), Positives = 146/309 (47%), Gaps = 19/309 (6%) Query: 57 NIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST 116 ++ +T +E EALLLE +I++ +P FNI L++ S+PYI IT+ K P + + Sbjct: 1 DLELIITTSEKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEVKR 59 Query: 117 IQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176 YFGP+ + +T++ +++ F L C RPCL + + C GPC EI Sbjct: 60 DGAHYFGPYPGRFSARQTVDLIEKLFPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIE 115 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 Y + +H+ +FL G N+K+K+ +M AT ++E A RD++ A++ Sbjct: 116 PAVYKKQIHKISRFLEGDVKNVKDKLLGDMLTATENLEFERAAELRDKIHAINETIEKQH 175 Query: 237 SIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293 I+ D Y N + F G G+ + E T + L+ FL QF Sbjct: 176 IIFPGLKNRDIIGCYEQDNYLSVFVFFVRNGAINGSKWHVFQV--EKTLQEELATFLNQF 233 Query: 294 YTD--KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351 Y D P+ +L++E+ +++ L E + P++G K+K ++ A+ NA + Sbjct: 234 YEDPNNIQPKELLIAEKIDKSLLNE-------PLRKACLFPQKGSKKKQVDLAIENAKSA 286 Query: 352 HTQKLSTEI 360 + + Sbjct: 287 YIAYAKMKE 295 >gi|118471901|ref|YP_888535.1| hypothetical protein MSMEG_4259 [Mycobacterium smegmatis str. MC2 155] gi|118173188|gb|ABK74084.1| DNA polymerase III, epsilon subunit [Mycobacterium smegmatis str. MC2 155] Length = 672 Score = 167 bits (424), Expect = 3e-39, Method: Composition-based stats. Identities = 50/265 (18%), Positives = 95/265 (35%), Gaps = 7/265 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ +P PGVY + VLYVG A +L++R++ Y + R+ M S + Sbjct: 277 ADGLPNRPGVYLFRGPSDEVLYVGTAVDLRRRVRQYFTGADPRARMKEMASLATRVDHVE 336 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 ++EA + E ++ P +N + K + ++ +T P L RD + Sbjct: 337 CAHDLEAGVRELRLLAAHAPPYNRRSKAPKRWWWVALT-DEPFPRLSAVRDPRHRKA--I 393 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF++ +T + L R +R+C C ++ C T +++Y Sbjct: 394 GPFSARSDAVETADLLARFTGVRTCTSRFGATGIHRCPERELSPCPA--TQSAGADEYAA 451 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH--IQNHNDSIYN 240 A + G + + + ++ + YE A RD A + Sbjct: 452 AARRAADLIDGADSAVLADVLMHIEKLAADSRYEKAARVRDHAAVAIDTLWRGQRLQTLT 511 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQ 265 + +GQ Sbjct: 512 SLPELVAARRDGNGGWHFAVVRYGQ 536 >gi|167816742|ref|ZP_02448422.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 91] Length = 256 Score = 167 bits (424), Expect = 4e-39, Method: Composition-based stats. Identities = 75/209 (35%), Positives = 111/209 (53%), Gaps = 4/209 (1%) Query: 73 EANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVE 132 E N+IK L PR+NIL RDDKS+PY+ +T H+ P + +R + + YFGPF S AV Sbjct: 1 ENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGPFPSAWAVR 59 Query: 133 KTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLS 192 ++I LQR F LR+C DSVF +RTRPCLL QI RCS PC G I E Y V A +FL Sbjct: 60 ESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDVDNASRFLL 119 Query: 193 GGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYH 249 G + ++ R M+ + +E A R+++++L+ + + +D ++ Sbjct: 120 GRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSDVDILAVVA 179 Query: 250 NKNLACIQTCFFHFGQNRGTCTFFLKTDS 278 C+ G++ G +F Sbjct: 180 QGGRVCVNLAMVRGGRHLGDKAYFPAHVE 208 >gi|226307078|ref|YP_002767038.1| DNA polymerase III epsilon subunit [Rhodococcus erythropolis PR4] gi|226186195|dbj|BAH34299.1| putative DNA polymerase III epsilon subunit [Rhodococcus erythropolis PR4] Length = 586 Score = 167 bits (423), Expect = 4e-39, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 93/234 (39%), Gaps = 6/234 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY + LY+G A +L++R+++Y + R+ M++ + Sbjct: 237 NLPRSPGVYLFRGPSDEALYIGTATDLRRRVRNYFTGSETRGRMKEMVALATRVDHVECA 296 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +EA + E ++ P +N + K +I +T P L R + GP Sbjct: 297 HALEAGVRELRLLSAHAPPYNRRSKFPKRGWWITLT-DEAFPRLSVVRTPTADS---IGP 352 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP--CLLFQIKRCSGPCTGEISSEKYME 182 F S + +++ LR+C + R C ++ C E++++ Y Sbjct: 353 FTSRGDAVEVADTVAEFSRLRTCTKRLGRGAVHGPDCPARELGACPASWAPELTAQDYAA 412 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + F G N +++ +++ + +E+A RDR A+S Sbjct: 413 APETVRGFFRGTNDAPLQQMQARIDELSEHALFENAARLRDRTVAVSTAVRRTQ 466 >gi|270684462|ref|ZP_06222837.1| UvrABC system, protein C [Haemophilus influenzae HK1212] gi|270316201|gb|EFA28168.1| UvrABC system, protein C [Haemophilus influenzae HK1212] Length = 118 Score = 167 bits (423), Expect = 5e-39, Method: Composition-based stats. Identities = 43/118 (36%), Positives = 70/118 (59%), Gaps = 2/118 (1%) Query: 495 ISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA- 552 I +AKG R AG E + K E + L L+ IQ +RDE+H AI+ HRK+R+KA Sbjct: 1 IGVAKGVDRRAGQEVLIISKQEREIHLPDDSLALHLIQHIRDESHNHAISGHRKKRQKAF 60 Query: 553 AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 S L+ I G+G R++ LL+ G ++ + +++ + +AS+ GIS K+A +I+ + Sbjct: 61 TQSGLETIEGVGAKRRQALLKYLGGLQGVKKATLDEIASVPGISLKLAERIFETLKND 118 >gi|4584815|emb|CAB40816.1| excinuclease ABC, subunit C [Listeria monocytogenes] Length = 104 Score = 167 bits (423), Expect = 5e-39, Method: Composition-based stats. Identities = 40/93 (43%), Positives = 61/93 (65%), Gaps = 1/93 (1%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R +SY + + + ++ +I + + VT + Sbjct: 13 LPDQPGCYLMKDRQGTIIYVGKAKILKNRERSYFSGTHDS-KTQRLVQEIVDFEYIVTSS 71 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYIL 98 VEALLLE N+IK+ PRFNI L+DDK++P+I Sbjct: 72 NVEALLLEINLIKKHDPRFNIRLKDDKTYPFIK 104 >gi|302869008|ref|YP_003837645.1| DNA polymerase III subunit epsilon [Micromonospora aurantiaca ATCC 27029] gi|302571867|gb|ADL48069.1| DNA polymerase III, epsilon subunit [Micromonospora aurantiaca ATCC 27029] Length = 584 Score = 167 bits (422), Expect = 6e-39, Method: Composition-based stats. Identities = 57/236 (24%), Positives = 98/236 (41%), Gaps = 3/236 (1%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ +P+ PGVY R LYVG + ++ R++SY + RI+ M++ + Sbjct: 226 ADGLPKVPGVYIFRAADDRPLYVGTSGDIATRVRSYFTAAEKRARISEMLAAAERVEAVE 285 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +EA + E +I P +N + + ++ +T P L RD + +Y Sbjct: 286 CAHSLEAEVRELRLIAAHAPPYNRRSKYPERQVWLKLT-DEAYPRLSIVRDIAPTDTAYL 344 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP-CLLFQIKRCSGPCTGEISSEKYM 181 GPF S A E LR C + R T P C L ++ RC PC I+ E+Y Sbjct: 345 GPFRSRQAAELAAAGFHDAVPLRQCTHRLSRRTTMPACALAELGRCPAPCEHRITPEEYD 404 Query: 182 EFVHEAKKFLSGGNH-NLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + + + + + + + + + E YE A + R RL A+ Sbjct: 405 DAAATPFRTATSDDPGVVVDALLARIEVLSAAERYEEAAVVRGRLVAVLRAAVRMQ 460 >gi|153831517|ref|ZP_01984184.1| UvrABC system protein C [Vibrio cholerae 623-39] gi|148873001|gb|EDL71136.1| UvrABC system protein C [Vibrio cholerae 623-39] Length = 264 Score = 167 bits (422), Expect = 6e-39, Method: Composition-based stats. Identities = 79/229 (34%), Positives = 126/229 (55%), Gaps = 5/229 (2%) Query: 74 ANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEK 133 N IK+ P++N+LLRDDKS+PYI ++ HK P L HR + +G YFGP+ AV + Sbjct: 1 HNYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKKRRGEYFGPYPDSGAVRE 59 Query: 134 TINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLS 192 T++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC IS + Y E VH + FL Sbjct: 60 TLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQEIVHYLRLFLQ 119 Query: 193 GGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYH 249 G ++ + + M QA+ + +E A RD++ A+ +Q + +D Sbjct: 120 GKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDSLEDLDVLGFAQ 179 Query: 250 NKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298 +ACI G+ G+ + F K S+++ ++ FL Q+Y Sbjct: 180 ENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHS 228 >gi|91205184|ref|YP_537539.1| excinuclease ABC subunit C [Rickettsia bellii RML369-C] gi|91068728|gb|ABE04450.1| Excinuclease ABC subunit C [Rickettsia bellii RML369-C] Length = 307 Score = 166 bits (421), Expect = 8e-39, Method: Composition-based stats. Identities = 98/298 (32%), Positives = 148/298 (49%), Gaps = 2/298 (0%) Query: 45 THRITHMISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHK 104 RI M+ Q+ + + VT +E EA LLE +IK+ +PRFNILLR DKS YI + H Sbjct: 2 RGRIARMVHQVYLVEYKVTISESEAFLLETQLIKQHQPRFNILLRRDKSASYIKLRSDHD 61 Query: 105 IPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQI 164 P L K ++ FGPF S ++ I LQ+ F LR+C+DS F R RPCL ++I Sbjct: 62 FPTLVKCYLDNSTGNKLFGPFTSGHQIDLIITELQKIFKLRTCSDSDFAFRKRPCLEYEI 121 Query: 165 KRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR 224 +C PCTG IS E Y E + + FLS L K+A M + +E A + RDR Sbjct: 122 GKCFAPCTGNISKEDYAELIEQINDFLSSNIEKLLGKLALKMQALSDHSHFEKAALIRDR 181 Query: 225 LAALSHIQNHNDSIYNRMDCFSLYHNKNLACIQTCF--FHFGQNRGTCTFFLKTDSESTN 282 + + + Y + + ++ + Q + GQ G + + +T Sbjct: 182 INLIKLSKLRIGKQYEGIIDADVIVIRDDSRFQIKVLLYRGGQKWGEQNYSPIYNQTNTK 241 Query: 283 AQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKI 340 A++L F+ QFY + + I+++ + + + S K Y K K VPK+G K +I Sbjct: 242 AEVLESFIGQFYQTRKPAKEIIINVPIQNSEPIISSLKKLYNIKTKFIVPKRGSKAQI 299 >gi|61680598|pdb|1YD6|A Chain A, Crystal Structure Of The Giy-Yig N-Terminal Endonuclease Domain Of Uvrc From Bacillus Caldotenax gi|61680599|pdb|1YD6|B Chain B, Crystal Structure Of The Giy-Yig N-Terminal Endonuclease Domain Of Uvrc From Bacillus Caldotenax gi|61680600|pdb|1YD6|C Chain C, Crystal Structure Of The Giy-Yig N-Terminal Endonuclease Domain Of Uvrc From Bacillus Caldotenax gi|61680601|pdb|1YD6|D Chain D, Crystal Structure Of The Giy-Yig N-Terminal Endonuclease Domain Of Uvrc From Bacillus Caldotenax Length = 99 Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats. Identities = 37/89 (41%), Positives = 60/89 (67%), Gaps = 1/89 (1%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG Y M D G V+YVGKA +L++R++SY H + ++ +I + + VT + Sbjct: 12 LPEQPGCYLMKDKHGTVIYVGKAKSLKERVRSYFTGT-HDGKTQRLVEEIADFEYIVTSS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSF 94 EAL+LE N+IK+ P++N++L+DDKS+ Sbjct: 71 NAEALILEMNLIKKHDPKYNVMLKDDKSY 99 >gi|315504521|ref|YP_004083408.1| DNA polymerase iii, epsilon subunit [Micromonospora sp. L5] gi|315411140|gb|ADU09257.1| DNA polymerase III, epsilon subunit [Micromonospora sp. L5] Length = 584 Score = 165 bits (418), Expect = 2e-38, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 97/236 (41%), Gaps = 3/236 (1%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ +P+ PGVY R LYVG + ++ R++SY + RI+ M++ + Sbjct: 226 ADGLPKVPGVYIFRAADDRPLYVGTSGDIATRVRSYFTAAEKRARISEMLAAAERVEAVE 285 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +EA + E +I P +N + + ++ +T P L R + +Y Sbjct: 286 CAHSLEAEVRELRLIAAHAPPYNRRSKYPERQVWLKLT-DEAYPRLSIVRALAPTDTAYL 344 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP-CLLFQIKRCSGPCTGEISSEKYM 181 GPF S A E LR C + R T P C L ++ RC PC +I+ E+Y Sbjct: 345 GPFRSRQAAELAAAGFHDAVPLRQCTHRLSRRTTMPACALAELGRCPAPCEHKITPEEYD 404 Query: 182 EFVHEAKKFLSGGNH-NLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + + + + + + + + + YE A + R RL A+ Sbjct: 405 DAAATPFRTATSDDPGVVVDALLARIEVLSAARRYEEAAVVRGRLVAVLRAAVRMQ 460 >gi|229490475|ref|ZP_04384316.1| DNA polymerase III, epsilon subunit [Rhodococcus erythropolis SK121] gi|229322765|gb|EEN88545.1| DNA polymerase III, epsilon subunit [Rhodococcus erythropolis SK121] Length = 608 Score = 165 bits (418), Expect = 2e-38, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 92/234 (39%), Gaps = 6/234 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY + LY+G A +L++R+++Y + R+ M++ + Sbjct: 259 NLPRSPGVYLFRGPSDEALYIGTATDLRRRVRNYFTGSETRGRMKEMVALATRVDHVECA 318 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 +EA + E ++ P +N + K +I +T P L R + GP Sbjct: 319 HALEAGVRELRLLSAHAPPYNRRSKFPKRGWWITLT-DEAFPRLSVVRTPTADS---IGP 374 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP--CLLFQIKRCSGPCTGEISSEKYME 182 F S +++ LR+C + R C ++ C T EI++ Y Sbjct: 375 FTSRADAVDVADTVAEFSRLRTCTKRLGRGAVHGPDCPARELGACPASWTPEINAADYAA 434 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + F G N +++ +++ + +E+A RDR A++ Sbjct: 435 APEAVRGFFRGTNDAPLQQMQARIDELSAHALFENAARLRDRTVAVATAVRRTQ 488 >gi|108805769|ref|YP_645706.1| hypothetical protein Rxyl_2984 [Rubrobacter xylanophilus DSM 9941] gi|108767012|gb|ABG05894.1| DNA polymerase III, epsilon subunit [Rubrobacter xylanophilus DSM 9941] Length = 560 Score = 165 bits (418), Expect = 2e-38, Method: Composition-based stats. Identities = 65/195 (33%), Positives = 92/195 (47%), Gaps = 8/195 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 +E +P GVY LD G VLYVGKA NL+ R+++Y + + ++ ++ ++ +RF Sbjct: 223 AEGLPASCGVYYFLDGGGGVLYVGKAKNLRARVRTYFNGGDGRRKVRRLVEEVAAVRFRT 282 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG--S 120 T TE+EALLLEA I+RL PR+N R++ YI P + G Sbjct: 283 TGTELEALLLEAREIRRLSPRYNTAGREEGGRWYIGFPRGEPYPVPERVSGEEAGDGFLL 342 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 GP+ S V+ + +L R F L PCL Q+ RC PC G S E Sbjct: 343 LLGPYRSAGMVDACVEALGRIFPL-----RRCSGEGGPCLYGQMGRC-APCMGMESGEYA 396 Query: 181 MEFVHEAKKFLSGGN 195 E V L G + Sbjct: 397 REVVGGVAALLRGED 411 >gi|282854298|ref|ZP_06263635.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J139] gi|282583751|gb|EFB89131.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J139] Length = 633 Score = 164 bits (414), Expect = 6e-38, Method: Composition-based stats. Identities = 75/381 (19%), Positives = 141/381 (37%), Gaps = 15/381 (3%) Query: 3 SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57 ++ +PE GVY LD VLYVGK+ N+++R+ Y ++ R+ M+ Sbjct: 261 AKDLPEKSGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 320 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117 ++ T++EA + E +I +PR+N R S ++ +T P L + + Sbjct: 321 VKARECSTQLEAGVRELRLIDAHQPRYNRRSRRQGSVWWVTLT-HEAHPRLAVVQRAHHD 379 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 +GPF S A + L F LR C+ ++ RH C L ++ RCS PC Sbjct: 380 SQPPWGPFTSRQAATRAAIILAEAFGLRQCSGAMSRHPDG-CPLAEMGRCSAPC--LDPH 436 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 Y V A+ ++ +L +++A+ + + + E +E A + + Sbjct: 437 IDYSTIVGFARLAMTDDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 496 Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + + C + ++ A + G+ G L TD + + Sbjct: 497 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGTDPMPVIDAVCATA-----ET 551 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 L + EE L+ F + V + ++ + A + Sbjct: 552 VSASPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTNDLAARVAALHHP 611 Query: 357 STEISHQMILKDFTKKFALPH 377 S + +D + L Sbjct: 612 GHNESDEADSQDRQARPQLAQ 632 >gi|314966430|gb|EFT10529.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL082PA2] gi|315091670|gb|EFT63646.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA4] gi|327327874|gb|EGE69650.1| putative DNA polymerase III, epsilon subunit [Propionibacterium acnes HL103PA1] Length = 590 Score = 163 bits (413), Expect = 6e-38, Method: Composition-based stats. Identities = 75/381 (19%), Positives = 141/381 (37%), Gaps = 15/381 (3%) Query: 3 SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57 ++ +PE GVY LD VLYVGK+ N+++R+ Y ++ R+ M+ Sbjct: 218 AKDLPERSGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 277 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117 ++ T++EA + E +I +PR+N R S ++ +T P L + + Sbjct: 278 VKARECSTQLEAGVRELRLIDAHQPRYNRRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 336 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 +GPF S A + L F LR C+ ++ RH C L ++ RCS PC Sbjct: 337 SQPPWGPFTSRQAATRAAIILAEAFGLRQCSGAMSRHPDG-CPLAEMGRCSAPC--LDPH 393 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 Y V A+ ++ +L +++A+ + + + E +E A + + Sbjct: 394 IDYSTIVGFARLAMTDDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 453 Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + + C + ++ A + G+ G L TD + + Sbjct: 454 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGTDPMPVIDAVCATA-----ET 508 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 L + EE L+ F + V + ++ + A + Sbjct: 509 VSASPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTNDLAARVAALHHP 568 Query: 357 STEISHQMILKDFTKKFALPH 377 S + +D + L Sbjct: 569 GHNESDEADSQDRQARPQLAQ 589 >gi|314981011|gb|EFT25105.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA3] gi|315093023|gb|EFT64999.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL060PA1] Length = 597 Score = 163 bits (413), Expect = 6e-38, Method: Composition-based stats. Identities = 75/381 (19%), Positives = 141/381 (37%), Gaps = 15/381 (3%) Query: 3 SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57 ++ +PE GVY LD VLYVGK+ N+++R+ Y ++ R+ M+ Sbjct: 225 AKDLPERSGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 284 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117 ++ T++EA + E +I +PR+N R S ++ +T P L + + Sbjct: 285 VKARECSTQLEAGVRELRLIDAHQPRYNRRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 343 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 +GPF S A + L F LR C+ ++ RH C L ++ RCS PC Sbjct: 344 SQPPWGPFTSRQAATRAAIILAEAFGLRQCSGAMSRHPDG-CPLAEMGRCSAPC--LDPH 400 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 Y V A+ ++ +L +++A+ + + + E +E A + + Sbjct: 401 IDYSTIVGFARLAMTDDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 460 Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + + C + ++ A + G+ G L TD + + Sbjct: 461 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGTDPMPVIDAVCATA-----ET 515 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 L + EE L+ F + V + ++ + A + Sbjct: 516 VSASPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTNDLAARVAALHHP 575 Query: 357 STEISHQMILKDFTKKFALPH 377 S + +D + L Sbjct: 576 GHNESDEADSQDRQARPQLAQ 596 >gi|50842208|ref|YP_055435.1| hypothetical protein PPA0720 [Propionibacterium acnes KPA171202] gi|50839810|gb|AAT82477.1| DNA polymerase III epsilon subunit (3'-5' exonuclease) [Propionibacterium acnes KPA171202] gi|314923288|gb|EFS87119.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL001PA1] gi|315107037|gb|EFT79013.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL030PA1] Length = 633 Score = 163 bits (413), Expect = 6e-38, Method: Composition-based stats. Identities = 75/381 (19%), Positives = 141/381 (37%), Gaps = 15/381 (3%) Query: 3 SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57 ++ +PE GVY LD VLYVGK+ N+++R+ Y ++ R+ M+ Sbjct: 261 AKDLPERSGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 320 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117 ++ T++EA + E +I +PR+N R S ++ +T P L + + Sbjct: 321 VKARECSTQLEAGVRELRLIDAHQPRYNRRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 379 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 +GPF S A + L F LR C+ ++ RH C L ++ RCS PC Sbjct: 380 SQPPWGPFTSRQAATRAAIILAEAFGLRQCSGAMSRHPDG-CPLAEMGRCSAPC--LDPH 436 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 Y V A+ ++ +L +++A+ + + + E +E A + + Sbjct: 437 IDYSTIVGFARLAMTDDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 496 Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + + C + ++ A + G+ G L TD + + Sbjct: 497 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGTDPMPVIDAVCATA-----ET 551 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 L + EE L+ F + V + ++ + A + Sbjct: 552 VSASPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTNDLAARVAALHHP 611 Query: 357 STEISHQMILKDFTKKFALPH 377 S + +D + L Sbjct: 612 GHNESDEADSQDRQARPQLAQ 632 >gi|315103201|gb|EFT75177.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA2] Length = 658 Score = 163 bits (413), Expect = 7e-38, Method: Composition-based stats. Identities = 75/381 (19%), Positives = 141/381 (37%), Gaps = 15/381 (3%) Query: 3 SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57 ++ +PE GVY LD VLYVGK+ N+++R+ Y ++ R+ M+ Sbjct: 286 AKDLPERSGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 345 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117 ++ T++EA + E +I +PR+N R S ++ +T P L + + Sbjct: 346 VKARECSTQLEAGVRELRLIDAHQPRYNRRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 404 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 +GPF S A + L F LR C+ ++ RH C L ++ RCS PC Sbjct: 405 SQPPWGPFTSRQAATRAAIILAEAFGLRQCSGAMSRHPDG-CPLAEMGRCSAPC--LDPH 461 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 Y V A+ ++ +L +++A+ + + + E +E A + + Sbjct: 462 IDYSTIVGFARLAMTDDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 521 Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + + C + ++ A + G+ G L TD + + Sbjct: 522 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGTDPMPVIDAVCATA-----ET 576 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 L + EE L+ F + V + ++ + A + Sbjct: 577 VSASPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTNDLAARVAALHHP 636 Query: 357 STEISHQMILKDFTKKFALPH 377 S + +D + L Sbjct: 637 GHNESDEADSQDRQARPQLAQ 657 >gi|145642358|ref|ZP_01797920.1| excinuclease ABC subunit C [Haemophilus influenzae R3021] gi|145272959|gb|EDK12843.1| excinuclease ABC subunit C [Haemophilus influenzae 22.4-21] Length = 116 Score = 163 bits (413), Expect = 7e-38, Method: Composition-based stats. Identities = 41/116 (35%), Positives = 69/116 (59%), Gaps = 2/116 (1%) Query: 497 IAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AY 554 +AKG R AG E + K+ + L L+ IQ +RDE+H +AI+ HRK+R+KA Sbjct: 1 MAKGVDRRAGQEVLIISKQDREIHLPDDSLALHLIQHIRDESHNYAISGHRKKRQKAFTQ 60 Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 S L+ I G+G R++ LL+ G ++ + +++ + +AS+ GIS K+A I+ + Sbjct: 61 SGLETIEGVGAKRRQALLKYLGGLQGVKKATLDEIASVPGISLKLAETIFETLKND 116 >gi|291301852|ref|YP_003513130.1| DNA polymerase III subunit epsilon [Stackebrandtia nassauensis DSM 44728] gi|290571072|gb|ADD44037.1| DNA polymerase III, epsilon subunit [Stackebrandtia nassauensis DSM 44728] Length = 578 Score = 162 bits (411), Expect = 1e-37, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 93/229 (40%), Gaps = 3/229 (1%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 +E +P PGVY D R LYVG + +L R++ Y + ++ M+ + Sbjct: 221 AEGLPHAPGVYVFRDAEDRPLYVGTSVDLAARVRGYFSAGETRGKMRDMLRLAERVEAIE 280 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +EA + E +I KP FN + + ++ +T P L R ++ Sbjct: 281 CAHRLEAGVREVRLIGATKPPFNRRSKYPERVLWLRLT-AEAYPRLSVARTPPEAGSAWL 339 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEKYM 181 GPF S + E +++ LR C + + + C L ++ C PC I ++Y Sbjct: 340 GPFTSQRSAEYARDAVHDALPLRQCRTRLSPRKVSSACALAEMG-CPAPCQLSIGVDEYG 398 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH 230 + + ++ + + + + Q + +E A R RLAA Sbjct: 399 KIAAGFAEAVAADPAAIVDPLLARIAQLSDAHRFEEAAEARSRLAAFLR 447 >gi|226229247|ref|YP_002763353.1| putative exonuclease [Gemmatimonas aurantiaca T-27] gi|226092438|dbj|BAH40883.1| putative exonuclease [Gemmatimonas aurantiaca T-27] Length = 363 Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats. Identities = 77/350 (22%), Positives = 131/350 (37%), Gaps = 38/350 (10%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 PGVY+M+ G V+YVG++ L+ R+ SY + ++ ++ I + T TE Sbjct: 7 NRPGVYRMIGPTGGVIYVGQSRVLRTRLLSYFRAKGRRNKAARILRHAFQIEWEYTNTEF 66 Query: 68 EALLLEANMIKRLKPRFNILL-RDDKSFPYILITDKHKIPALYKH-RDSSTIQGSYFGPF 125 ALL E +IK+ +P FN ++ DD Y+ +T +P L R + FGPF Sbjct: 67 GALLRELRLIKQYRPHFNSMMVLDDWPRAYVALTGG-NVPGLRVVARSDDPAAVALFGPF 125 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSV-------------------------------FRH 154 V + + + +L T LR C R Sbjct: 126 RRVQQLREAVRALAETMSLRDCTLEEGSLRTPRRTSRAATLWFAGDPDAPTGKVVASGRS 185 Query: 155 RTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKED 214 R CL + C+GPC G + Y + + F G ++ M A + Sbjct: 186 RAPGCLRHDLGTCAGPCIGAGDAVDYRAAAADVRAFFEGRGDVPVRRLEAAMQHAADELA 245 Query: 215 YESAIIHRDRLAALSHIQNHNDSIYNRMDCFSL-YHNKNLACIQTCFFHFGQNRGTCTFF 273 +E A + RDRL + + + +D + YH A + + RGT Sbjct: 246 FERARVLRDRLILVRWLFERLQHFHANVDRLTFRYHAVGHAD---HEWVYLIRRGTVRAE 302 Query: 274 LKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQY 323 L+ T + + + Y + + + +E L+ F ++ Sbjct: 303 LRAPQTETEHEAFRALVARIYDGPDLSGADIPTHDLDEFFLVASWFRRRP 352 >gi|313764773|gb|EFS36137.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL013PA1] gi|313807207|gb|EFS45694.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA2] gi|313813245|gb|EFS50959.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL025PA1] gi|313820015|gb|EFS57729.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA1] gi|313825546|gb|EFS63260.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL063PA1] gi|313830622|gb|EFS68336.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL007PA1] gi|315096369|gb|EFT68345.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL038PA1] gi|315101083|gb|EFT73059.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL046PA1] gi|327325880|gb|EGE67670.1| putative DNA polymerase III, epsilon subunit [Propionibacterium acnes HL096PA2] gi|328753125|gb|EGF66741.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA1] gi|328759130|gb|EGF72746.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL025PA2] gi|332675138|gb|AEE71954.1| hypothetical protein PAZ_c07700 [Propionibacterium acnes 266] Length = 587 Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats. Identities = 76/381 (19%), Positives = 142/381 (37%), Gaps = 15/381 (3%) Query: 3 SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57 ++ + E PGVY LD VLYVGK+ N+++R+ Y ++ R+ M+ Sbjct: 215 AKDLTEGPGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 274 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117 ++ T++EA + E +I +PR+N R S ++ +T P L + + Sbjct: 275 VKARECSTQLEAGVRELRLIDAHQPRYNHRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 333 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 +GPF S A + L F LR C+ ++ RH C L ++ RCS PC Sbjct: 334 SQPPWGPFISRQAATRAAIILAEAFGLRQCSGAMSRHPDG-CPLAEMGRCSAPC--LNPY 390 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 Y V A+ ++G +L +++A+ + + + E +E A + + Sbjct: 391 VDYSTIVGFARLAMTGDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 450 Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + + C + ++ A + G+ G L D + + Sbjct: 451 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGIDPMPIIDAVCATA-----ET 505 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P L + EE L+ F + V + ++ + A + Sbjct: 506 VSAPPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTDDLAARVAALHHP 565 Query: 357 STEISHQMILKDFTKKFALPH 377 S + +D + L Sbjct: 566 GHNESDETDSQDRQARPQLTP 586 >gi|289426896|ref|ZP_06428622.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J165] gi|295130296|ref|YP_003580959.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Propionibacterium acnes SK137] gi|289159985|gb|EFD08163.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J165] gi|291376452|gb|ADE00307.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Propionibacterium acnes SK137] gi|313772552|gb|EFS38518.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL074PA1] gi|313802090|gb|EFS43322.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA2] gi|313838422|gb|EFS76136.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL086PA1] gi|314918505|gb|EFS82336.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA1] gi|314925502|gb|EFS89333.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA3] gi|314963121|gb|EFT07221.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL082PA1] gi|314973624|gb|EFT17720.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL053PA1] gi|315077585|gb|EFT49643.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL053PA2] gi|315084628|gb|EFT56604.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL027PA2] gi|327447777|gb|EGE94431.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL043PA1] gi|327453554|gb|EGF00209.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL083PA2] Length = 584 Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats. Identities = 76/381 (19%), Positives = 142/381 (37%), Gaps = 15/381 (3%) Query: 3 SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57 ++ + E PGVY LD VLYVGK+ N+++R+ Y ++ R+ M+ Sbjct: 212 AKDLTEGPGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 271 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117 ++ T++EA + E +I +PR+N R S ++ +T P L + + Sbjct: 272 VKARECSTQLEAGVRELRLIDAHQPRYNHRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 330 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 +GPF S A + L F LR C+ ++ RH C L ++ RCS PC Sbjct: 331 SQPPWGPFISRQAATRAAIILAEAFGLRQCSGAMSRHPDG-CPLAEMGRCSAPC--LNPY 387 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 Y V A+ ++G +L +++A+ + + + E +E A + + Sbjct: 388 VDYSTIVGFARLAMTGDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 447 Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + + C + ++ A + G+ G L D + + Sbjct: 448 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGIDPMPIIDAVCATA-----ET 502 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P L + EE L+ F + V + ++ + A + Sbjct: 503 VSAPPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTDDLAARVAALHHP 562 Query: 357 STEISHQMILKDFTKKFALPH 377 S + +D + L Sbjct: 563 GHNESDETDSQDRQARPQLTP 583 >gi|289426266|ref|ZP_06428012.1| GIY-YIG catalytic domain protein [Propionibacterium acnes SK187] gi|289153431|gb|EFD02146.1| GIY-YIG catalytic domain protein [Propionibacterium acnes SK187] Length = 584 Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats. Identities = 76/381 (19%), Positives = 142/381 (37%), Gaps = 15/381 (3%) Query: 3 SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57 ++ + E PGVY LD VLYVGK+ N+++R+ Y ++ R+ M+ Sbjct: 212 AKDLTEGPGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 271 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117 ++ T++EA + E +I +PR+N R S ++ +T P L + + Sbjct: 272 VKARECSTQLEAGVRELRLIDAHQPRYNHRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 330 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 +GPF S A + L F LR C+ ++ RH C L ++ RCS PC Sbjct: 331 SQPPWGPFISRQAATRAAIILAEAFGLRQCSGAMSRHPDG-CPLAEMGRCSAPC--LNPY 387 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 Y V A+ ++G +L +++A+ + + + E +E A + + Sbjct: 388 VDYSTIVGFARLAMTGDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 447 Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + + C + ++ A + G+ G L D + + Sbjct: 448 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGIDPMPIIDAVCATA-----ET 502 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P L + EE L+ F + V + ++ + A + Sbjct: 503 VSAPPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTDDLAARVAALHHP 562 Query: 357 STEISHQMILKDFTKKFALPH 377 S + +D + L Sbjct: 563 GHNESDETDSQDRQARPQLTP 583 >gi|327332247|gb|EGE73984.1| putative DNA polymerase III, epsilon subunit [Propionibacterium acnes HL096PA3] Length = 584 Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats. Identities = 76/381 (19%), Positives = 142/381 (37%), Gaps = 15/381 (3%) Query: 3 SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57 ++ + E PGVY LD VLYVGK+ N+++R+ Y ++ R+ M+ Sbjct: 212 AKDLTEGPGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 271 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117 ++ T++EA + E +I +PR+N R S ++ +T P L + + Sbjct: 272 VKARECSTQLEAGVRELRLIDAHQPRYNHRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 330 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 +GPF S A + L F LR C+ ++ RH C L ++ RCS PC Sbjct: 331 SQPPWGPFISRQAATRAAIILAEAFGLRQCSGAMSRHPDG-CPLAEMGRCSAPC--LNPY 387 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 Y V A+ ++G +L +++A+ + + + E +E A + + Sbjct: 388 VDYSTIVGFARLAMTGDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 447 Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + + C + ++ A + G+ G L D + + Sbjct: 448 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGIDPMPIIDAVCATA-----ET 502 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P L + EE L+ F + V + ++ + A + Sbjct: 503 VSAPPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTDDLAARVAALHHP 562 Query: 357 STEISHQMILKDFTKKFALPH 377 S + +D + L Sbjct: 563 GHNESDETDSQDRQARPQLTP 583 >gi|314968043|gb|EFT12142.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA1] Length = 584 Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats. Identities = 76/381 (19%), Positives = 142/381 (37%), Gaps = 15/381 (3%) Query: 3 SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57 ++ + E PGVY LD VLYVGK+ N+++R+ Y ++ R+ M+ Sbjct: 212 AKDLTEGPGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 271 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117 ++ T++EA + E +I +PR+N R S ++ +T P L + + Sbjct: 272 VKARECSTQLEAGVRELRLIDAHQPRYNHRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 330 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 +GPF S A + L F LR C+ ++ RH C L ++ RCS PC Sbjct: 331 SQPPWGPFISRQAATRAAIILAEAFGLRQCSGAMSRHPDG-CPLAEMGRCSAPC--LNPY 387 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 Y V A+ ++G +L +++A+ + + + E +E A + + Sbjct: 388 VDYSTIVGFARLAMTGDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 447 Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + + C + ++ A + G+ G L D + + Sbjct: 448 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGIDPMPIIDAVCATA-----ET 502 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P L + EE L+ F + V + ++ + A + Sbjct: 503 VSAPPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTDDLAARVAALHHP 562 Query: 357 STEISHQMILKDFTKKFALPH 377 S + +D + L Sbjct: 563 GHNESDETDSQDRQARPQLTP 583 >gi|313815838|gb|EFS53552.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL059PA1] gi|314931784|gb|EFS95615.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL067PA1] gi|314956043|gb|EFT00441.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL027PA1] gi|314958449|gb|EFT02552.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA1] gi|314976217|gb|EFT20312.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL045PA1] gi|315088618|gb|EFT60594.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL072PA1] gi|327451091|gb|EGE97745.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA3] gi|328753779|gb|EGF67395.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL020PA1] gi|328760388|gb|EGF73957.1| putative DNA polymerase III, epsilon subunit [Propionibacterium acnes HL099PA1] Length = 590 Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats. Identities = 76/381 (19%), Positives = 142/381 (37%), Gaps = 15/381 (3%) Query: 3 SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57 ++ + E PGVY LD VLYVGK+ N+++R+ Y ++ R+ M+ Sbjct: 218 AKDLTEGPGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 277 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117 ++ T++EA + E +I +PR+N R S ++ +T P L + + Sbjct: 278 VKARECSTQLEAGVRELRLIDAHQPRYNHRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 336 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 +GPF S A + L F LR C+ ++ RH C L ++ RCS PC Sbjct: 337 SQPPWGPFISRQAATRAAIILAEAFGLRQCSGAMSRHPDG-CPLAEMGRCSAPC--LNPY 393 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 Y V A+ ++G +L +++A+ + + + E +E A + + Sbjct: 394 VDYSTIVGFARLAMTGDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 453 Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + + C + ++ A + G+ G L D + + Sbjct: 454 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGIDPMPIIDAVCATA-----ET 508 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P L + EE L+ F + V + ++ + A + Sbjct: 509 VSAPPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTDDLAARVAALHHP 568 Query: 357 STEISHQMILKDFTKKFALPH 377 S + +D + L Sbjct: 569 GHNESDETDSQDRQARPQLTP 589 >gi|314987763|gb|EFT31854.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA2] Length = 587 Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats. Identities = 76/381 (19%), Positives = 142/381 (37%), Gaps = 15/381 (3%) Query: 3 SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57 ++ + E PGVY LD VLYVGK+ N+++R+ Y ++ R+ M+ Sbjct: 215 AKDLTEGPGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 274 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117 ++ T++EA + E +I +PR+N R S ++ +T P L + + Sbjct: 275 VKARECSTQLEAGVRELRLIDAHQPRYNHRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 333 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 +GPF S A + L F LR C+ ++ RH C L ++ RCS PC Sbjct: 334 SQPPWGPFISRQAATRAAIILAEAFGLRQCSGAMSRHPDG-CPLAEMGRCSAPC--LNPY 390 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 Y V A+ ++G +L +++A+ + + + E +E A + + Sbjct: 391 VDYSTIVGFARLAMTGDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 450 Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + + C + ++ A + G+ G L D + + Sbjct: 451 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGIDPMPIIEAVCATA-----ET 505 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P L + EE L+ F + V + ++ + A + Sbjct: 506 VSAPPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTDDLAARVAALHHP 565 Query: 357 STEISHQMILKDFTKKFALPH 377 S + +D + L Sbjct: 566 GHNESDETDSQDRQARPQLTP 586 >gi|313809712|gb|EFS47433.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL083PA1] gi|314915265|gb|EFS79096.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA4] gi|314978176|gb|EFT22270.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL072PA2] gi|314983574|gb|EFT27666.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA1] gi|315098227|gb|EFT70203.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL059PA2] gi|327330574|gb|EGE72320.1| putative DNA polymerase III, epsilon subunit [Propionibacterium acnes HL097PA1] gi|327442625|gb|EGE89279.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL013PA2] gi|327445348|gb|EGE92002.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL043PA2] Length = 597 Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats. Identities = 76/381 (19%), Positives = 142/381 (37%), Gaps = 15/381 (3%) Query: 3 SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57 ++ + E PGVY LD VLYVGK+ N+++R+ Y ++ R+ M+ Sbjct: 225 AKDLTEGPGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 284 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117 ++ T++EA + E +I +PR+N R S ++ +T P L + + Sbjct: 285 VKARECSTQLEAGVRELRLIDAHQPRYNHRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 343 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 +GPF S A + L F LR C+ ++ RH C L ++ RCS PC Sbjct: 344 SQPPWGPFISRQAATRAAIILAEAFGLRQCSGAMSRHPDG-CPLAEMGRCSAPC--LNPY 400 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 Y V A+ ++G +L +++A+ + + + E +E A + + Sbjct: 401 VDYSTIVGFARLAMTGDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 460 Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + + C + ++ A + G+ G L D + + Sbjct: 461 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGIDPMPIIDAVCATA-----ET 515 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P L + EE L+ F + V + ++ + A + Sbjct: 516 VSAPPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTDDLAARVAALHHP 575 Query: 357 STEISHQMILKDFTKKFALPH 377 S + +D + L Sbjct: 576 GHNESDETDSQDRQARPQLTP 596 >gi|314990240|gb|EFT34331.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA3] Length = 604 Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats. Identities = 76/381 (19%), Positives = 142/381 (37%), Gaps = 15/381 (3%) Query: 3 SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57 ++ + E PGVY LD VLYVGK+ N+++R+ Y ++ R+ M+ Sbjct: 232 AKDLTEGPGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 291 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117 ++ T++EA + E +I +PR+N R S ++ +T P L + + Sbjct: 292 VKARECSTQLEAGVRELRLIDAHQPRYNHRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 350 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 +GPF S A + L F LR C+ ++ RH C L ++ RCS PC Sbjct: 351 SQPPWGPFISRQAATRAAIILAEAFGLRQCSGAMSRHPDG-CPLAEMGRCSAPC--LNPY 407 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 Y V A+ ++G +L +++A+ + + + E +E A + + Sbjct: 408 VDYSTIVGFARLAMTGDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 467 Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + + C + ++ A + G+ G L D + + Sbjct: 468 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGIDPMPIIEAVCATA-----ET 522 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P L + EE L+ F + V + ++ + A + Sbjct: 523 VSAPPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTDDLAARVAALHHP 582 Query: 357 STEISHQMILKDFTKKFALPH 377 S + +D + L Sbjct: 583 GHNESDETDSQDRQARPQLTP 603 >gi|313823175|gb|EFS60889.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA2] gi|313833843|gb|EFS71557.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL056PA1] gi|314919771|gb|EFS83602.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA3] Length = 604 Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats. Identities = 76/381 (19%), Positives = 142/381 (37%), Gaps = 15/381 (3%) Query: 3 SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57 ++ + E PGVY LD VLYVGK+ N+++R+ Y ++ R+ M+ Sbjct: 232 AKDLTEGPGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 291 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117 ++ T++EA + E +I +PR+N R S ++ +T P L + + Sbjct: 292 VKARECSTQLEAGVRELRLIDAHQPRYNHRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 350 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 +GPF S A + L F LR C+ ++ RH C L ++ RCS PC Sbjct: 351 SQPPWGPFISRQAATRAAIILAEAFGLRQCSGAMSRHPDG-CPLAEMGRCSAPC--LNPY 407 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 Y V A+ ++G +L +++A+ + + + E +E A + + Sbjct: 408 VDYSTIVGFARLAMTGDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 467 Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + + C + ++ A + G+ G L D + + Sbjct: 468 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGIDPMPIIDAVCATA-----ET 522 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P L + EE L+ F + V + ++ + A + Sbjct: 523 VSAPPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTDDLAARVAALHHP 582 Query: 357 STEISHQMILKDFTKKFALPH 377 S + +D + L Sbjct: 583 GHNESDETDSQDRQARPQLTP 603 >gi|329770494|ref|ZP_08261872.1| hypothetical protein HMPREF0433_01636 [Gemella sanguinis M325] gi|328836243|gb|EGF85912.1| hypothetical protein HMPREF0433_01636 [Gemella sanguinis M325] Length = 267 Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats. Identities = 82/280 (29%), Positives = 123/280 (43%), Gaps = 27/280 (9%) Query: 332 PKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK---DFTKKFALPHIPKRIEIYDNS 388 PK+G +KI++ + NA+ L E L+ + + I+ +DNS Sbjct: 11 PKRGNHKKILDTVVENANYFLNNNLELEELKSRKLQVTLNNIAEKLGVKSINSIDAFDNS 70 Query: 389 HIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEEN 448 +IMG AV V YRKF + +D M+ VL R + N E Sbjct: 71 NIMGVDAVSVKVNFTNGKKNTYNYRKFKIKETV--GINDIETMKEVLYRNYKNKKTNTE- 127 Query: 449 LNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGME 508 ++I+DGGK L+AA ++ K N I II +AK K E Sbjct: 128 -----------------LIIVDGGKNHLNAAIEIVHKKLGLNYIKIIGLAKNDKHIT--E 168 Query: 509 KFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLR 567 E + F+++++DE HRFAIT HR + K + S LD I GIG +R Sbjct: 169 YIITDDYEIIEFPKTSAEYLFLKQIQDEVHRFAITYHRATKTKNMFNSSLDNIEGIGKVR 228 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 K +LL+SF +++ I + E L ++ GI K K+ N Sbjct: 229 KNILLKSFASIEEIKNAPEEKLIAL-GIPKNAIIKLKNEL 267 >gi|315932393|gb|EFV11336.1| uvrB/uvrC motif family protein [Campylobacter jejuni subsp. jejuni 327] Length = 405 Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats. Identities = 110/425 (25%), Positives = 183/425 (43%), Gaps = 39/425 (9%) Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRMDCFSLYHN 250 L + + + M E+YE A RD++ + ++ + + F+L Sbjct: 6 NPSILIKNLEKQMLVLAQNENYEEAAKVRDQIVTIKDLEVKVEIDIAKLEDFEVFALAFE 65 Query: 251 KNLACIQTCFFHFGQNR--GTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP--ENILLS 306 ++ G+ + +K D + +I + + ++ I + Sbjct: 66 NSMLSTLRFVVQNGKIISVNSKITPIKNDIQWDKNEIYKQLILENFSMDIPLLANVIYVY 125 Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366 EE E+ LLE +++ K+ I +PK GEKR+I + A NA + + I Sbjct: 126 EEFEDRMLLEEILSQRFDKKISIKIPKIGEKRRICDLAFQNALLNIE--KEQKNHDFTIQ 183 Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426 K+ F L ++P IEI+DNSH+ G + VG MV N + K++YRKF+L ++ Sbjct: 184 KELKSYFELENLPNDIEIFDNSHLQGVANVGAMVTYSANSWDKSKYRKFHLK-----HKN 238 Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486 D MR VL R + ++ PD+ ++DGGK L A+ ++ Sbjct: 239 DYDQMREVLMR----------------RALDFDKIPPPDLWLIDGGKALLDLAKEIIVSS 282 Query: 487 NVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 I IS AK + G L++ D L F+Q+LRDEAHRFAI Sbjct: 283 GANVDILAISKEKIDAKAHRAKGGARDKIHSLKGEFSLSINDKKLQFLQKLRDEAHRFAI 342 Query: 543 TTHRKRRKKAAY--SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 + H+ +KK S L + G+ + LL +G + I ++ + LA + G KK+A Sbjct: 343 SFHQNTKKKQDLNSSKLVNL-GLSSGVIQKLLAYYGNFESIYKADFKDLAMLVG--KKVA 399 Query: 601 CKIYN 605 KI Sbjct: 400 QKIKE 404 >gi|54023690|ref|YP_117932.1| hypothetical protein nfa17220 [Nocardia farcinica IFM 10152] gi|54015198|dbj|BAD56568.1| putative DNA polymerase III subunit [Nocardia farcinica IFM 10152] Length = 598 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 76/201 (37%), Gaps = 4/201 (1%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PGVY + VLY+G A NL++R+++Y + R+ M++ + V Sbjct: 224 LPTAPGVYLFRGPSDEVLYIGTAVNLRRRVRTYFTGSETRGRMKEMVALATRVDHVVCAH 283 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EA + E ++ P +N + K +I +T P L R + GPF Sbjct: 284 GLEAGVRELRLLVAHAPPYNRRSKFPKRVWWITLT-DEAFPRLAVVRTPTPDA---LGPF 339 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 S +L LR+C + R C + C ++ +Y Sbjct: 340 TSRQDAVDVAATLAEHAGLRTCTTRLARSAVHDCPPSVVGGCPAARETPCTAAEYAPAPA 399 Query: 186 EAKKFLSGGNHNLKEKIARNM 206 + ++G + + + Sbjct: 400 AVRDLVAGRCDTVLHTMRARI 420 >gi|152967191|ref|YP_001362975.1| hypothetical protein Krad_3247 [Kineococcus radiotolerans SRS30216] gi|151361708|gb|ABS04711.1| DNA polymerase III, epsilon subunit [Kineococcus radiotolerans SRS30216] Length = 601 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 66/240 (27%), Positives = 100/240 (41%), Gaps = 12/240 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PGVYQ D AGRVLYVG + ++ +R+ SY ++ R+T M+ + + V T Sbjct: 229 LPSAPGVYQFRDAAGRVLYVGTSVDVHRRVSSYFTASETRPRMTEMVRLASTVVPVVCQT 288 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI---QGSYF 122 +EA + E +I P +N + + ++ +T P L + Y Sbjct: 289 PLEARVRELRLIAEHAPPYNRRSKAPEKVTWVKLTT-DAWPRLSLVKQVRDDVAAGAEYL 347 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT----RPCLLFQIKRCSGPC----TGE 174 GPF S E + +L T LR C + R T C+L +I RC PC G Sbjct: 348 GPFRSTRTAELAVEALHETHPLRQCTRRIPRTPTGEGPGACVLAEIGRCGAPCLGTGRGG 407 Query: 175 ISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234 +E Y V E + L + + + ++ YE A RDRL A Sbjct: 408 QDAESYAAVVAEVRAALRSDATTALTRGRERLRELAGQQRYEEAATTRDRLEAFLTAAER 467 >gi|315085964|gb|EFT57940.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA3] Length = 584 Score = 161 bits (407), Expect = 3e-37, Method: Composition-based stats. Identities = 75/381 (19%), Positives = 141/381 (37%), Gaps = 15/381 (3%) Query: 3 SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57 ++ + E PGVY LD VLYVGK+ N+++R+ Y ++ R+ M+ Sbjct: 212 AKDLTEGPGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 271 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117 ++ T++EA + E +I +PR+N R S ++ +T P L + + Sbjct: 272 VKARECSTQLEAGVRELRLIDAHQPRYNHRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 330 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 +GPF S A + L F LR C+ ++ R C L ++ RCS PC Sbjct: 331 SQPPWGPFISRQAATRAAIILAEAFGLRQCSGAMSRQPDG-CPLAEMGRCSAPC--LNPY 387 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 Y V A+ ++G +L +++A+ + + + E +E A + + Sbjct: 388 VDYSTIVGFARLAMTGDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 447 Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + + C + ++ A + G+ G L D + + Sbjct: 448 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGIDPMPIIDAVCATA-----ET 502 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P L + EE L+ F + V + ++ + A + Sbjct: 503 VSAPPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTDDLAARVAALHHP 562 Query: 357 STEISHQMILKDFTKKFALPH 377 S + +D + L Sbjct: 563 GHNESDETDSQDRQARPQLTP 583 >gi|314960311|gb|EFT04413.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA2] Length = 604 Score = 161 bits (407), Expect = 3e-37, Method: Composition-based stats. Identities = 75/381 (19%), Positives = 141/381 (37%), Gaps = 15/381 (3%) Query: 3 SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57 ++ + E PGVY LD VLYVGK+ N+++R+ Y ++ R+ M+ Sbjct: 232 AKDLTEGPGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 291 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117 ++ T++EA + E +I +PR+N R S ++ +T P L + + Sbjct: 292 VKARECSTQLEAGVRELRLIDAHQPRYNHRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 350 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 +GPF S A + L F LR C+ ++ R C L ++ RCS PC Sbjct: 351 SQPPWGPFISRQAATRAAIILAEAFGLRQCSGAMSRQPDG-CPLAEMGRCSAPC--LNPY 407 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 Y V A+ ++G +L +++A+ + + + E +E A + + Sbjct: 408 VDYSTIVGFARLAMTGDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 467 Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + + C + ++ A + G+ G L D + + Sbjct: 468 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGIDPMPIIDAVCATA-----ET 522 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P L + EE L+ F + V + ++ + A + Sbjct: 523 VSAPPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTDDLAARVAALHHP 582 Query: 357 STEISHQMILKDFTKKFALPH 377 S + +D + L Sbjct: 583 GHNESDETDSQDRQARPQLTP 603 >gi|313818253|gb|EFS55967.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL046PA2] Length = 597 Score = 161 bits (407), Expect = 3e-37, Method: Composition-based stats. Identities = 75/381 (19%), Positives = 141/381 (37%), Gaps = 15/381 (3%) Query: 3 SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57 ++ + E PGVY LD VLYVGK+ N+++R+ Y ++ R+ M+ Sbjct: 225 AKDLTEGPGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 284 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117 ++ T++EA + E +I +PR+N R S ++ +T P L + + Sbjct: 285 VKARECSTQLEAGVRELRLIDAHQPRYNHRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 343 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 +GPF S A + L F LR C+ ++ R C L ++ RCS PC Sbjct: 344 SQPPWGPFISRQAATRAAIILAEAFGLRQCSGAMSRQPDG-CPLAEMGRCSAPC--LNPY 400 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 Y V A+ ++G +L +++A+ + + + E +E A + + Sbjct: 401 VDYSTIVGFARLAMTGDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 460 Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + + C + ++ A + G+ G L D + + Sbjct: 461 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGIDPMPIIDAVCATA-----ET 515 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P L + EE L+ F + V + ++ + A + Sbjct: 516 VSAPPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTDDLAARVAALHHP 575 Query: 357 STEISHQMILKDFTKKFALPH 377 S + +D + L Sbjct: 576 GHNESDETDSQDRQARPQLTP 596 >gi|108761215|ref|YP_634259.1| GIY-YIG catalytic domain-containing protein [Myxococcus xanthus DK 1622] gi|108465095|gb|ABF90280.1| GIY-YIG catalytic domain protein [Myxococcus xanthus DK 1622] Length = 404 Score = 161 bits (407), Expect = 4e-37, Method: Composition-based stats. Identities = 67/233 (28%), Positives = 109/233 (46%), Gaps = 13/233 (5%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 PGVY+ML + VLYVGK+ ++ R+ SY + H + +I+ + I + T +E Sbjct: 61 NRPGVYRMLGPSDEVLYVGKSVRVRTRLLSYFRAEAH-EKAAEIIAHAHRIVWEYTPSEF 119 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127 ALL E +IK +P +N+ + D+ +I +T + +P L +S+ +G Y+GPF Sbjct: 120 AALLHEFRLIKSQRPLYNVEHKRDRGHCFIHLT-REPVPRLRVVSRASSERGDYYGPFHG 178 Query: 128 VDAVEKTINSLQRTFFLRSCADSV----------FRHRTRP-CLLFQIKRCSGPCTGEIS 176 A+ + ++ LR CA F + P C+ Q+ RC PC G + Sbjct: 179 RSAMSDVVRAVSDLLELRDCAADTPMRLADQGQLFPLKQEPLCMRGQLSRCLAPCAGGCT 238 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALS 229 +Y V +A+ FL G + + M A + +E A RDR L Sbjct: 239 RAEYDARVAQARAFLEGTSDTPLTLLRERMALAARRLLFEYAAELRDRAERLE 291 >gi|315108203|gb|EFT80179.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL030PA2] Length = 584 Score = 161 bits (406), Expect = 4e-37, Method: Composition-based stats. Identities = 75/381 (19%), Positives = 142/381 (37%), Gaps = 15/381 (3%) Query: 3 SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57 ++ + E PGVY LD VLYVGK+ N+++R+ Y ++ R+ M+ Sbjct: 212 AKDLTEGPGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 271 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117 ++ T++EA + E +I +PR+N R S ++ +T P L + + Sbjct: 272 VKARECSTQLEAGVRELRLIDAHQPRYNHRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 330 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 +GPF S A + L F LR C+ ++ R+ C L ++ RCS PC Sbjct: 331 SQPPWGPFISRQAATRAAIILAEAFGLRQCSGAMSRYPDG-CPLAEMGRCSAPC--LNPY 387 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 Y V A+ ++G +L +++A+ + + + E +E A + + Sbjct: 388 VDYSTIVGFARLAMTGDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 447 Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + + C + ++ A + G+ G L D + + Sbjct: 448 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGIDPMPIIDAVCATA-----ET 502 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P L + EE L+ F + V + ++ + A + Sbjct: 503 VSAPPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTDDLAARVAALHHP 562 Query: 357 STEISHQMILKDFTKKFALPH 377 S + +D + L Sbjct: 563 GHNESDETDSQDRQARPQLTP 583 >gi|313827785|gb|EFS65499.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL063PA2] Length = 590 Score = 161 bits (406), Expect = 4e-37, Method: Composition-based stats. Identities = 75/381 (19%), Positives = 142/381 (37%), Gaps = 15/381 (3%) Query: 3 SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57 ++ + E PGVY LD VLYVGK+ N+++R+ Y ++ R+ M+ Sbjct: 218 AKDLTEGPGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 277 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117 ++ T++EA + E +I +PR+N R S ++ +T P L + + Sbjct: 278 VKARECSTQLEAGVRELRLIDAHQPRYNHRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 336 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 +GPF S A + L F LR C+ ++ R+ C L ++ RCS PC Sbjct: 337 SQPPWGPFISRQAATRAAIILAEAFGLRQCSGAMSRYPDG-CPLAEMGRCSAPC--LNPY 393 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 Y V A+ ++G +L +++A+ + + + E +E A + + Sbjct: 394 VDYSTIVGFARLAMTGDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 453 Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + + C + ++ A + G+ G L D + + Sbjct: 454 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGIDPMPIIDAVCATA-----ET 508 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P L + EE L+ F + V + ++ + A + Sbjct: 509 VSAPPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTDDLAARVAALHHP 568 Query: 357 STEISHQMILKDFTKKFALPH 377 S + +D + L Sbjct: 569 GHNESDETDSQDRQARPQLTP 589 >gi|315080369|gb|EFT52345.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL078PA1] Length = 597 Score = 161 bits (406), Expect = 4e-37, Method: Composition-based stats. Identities = 76/381 (19%), Positives = 142/381 (37%), Gaps = 15/381 (3%) Query: 3 SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57 ++ + E PGVY LD VLYVGK+ N+++R+ Y ++ R+ M+ Sbjct: 225 AKDLTEGPGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 284 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117 ++ T++EA + E +I +PR+N R S ++ +T P L + + Sbjct: 285 VKARECSTQLEAGVRELRLIDAHQPRYNHRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 343 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 +GPF S A + L F LR C+ ++ RH C L ++ RCS PC Sbjct: 344 SQPPWGPFISRQAATRAAIILAEAFGLRQCSGAMSRHPDG-CPLAEMGRCSAPC--LNPY 400 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 Y V A+ ++G +L +++A+ + + + E +E A + + Sbjct: 401 VDYSTIVGFARLAMTGDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 460 Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + + C + ++ A + G+ G L D + + Sbjct: 461 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCCLGIDPMPIIDAVCATA-----ET 515 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P L + EE L+ F + V + ++ + A + Sbjct: 516 VSAPPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTDDLAARVAALHHP 575 Query: 357 STEISHQMILKDFTKKFALPH 377 S + +D + L Sbjct: 576 GHNESDETDSQDRQARPQLTP 596 >gi|254000498|ref|YP_003052561.1| DNA polymerase III subunit epsilon [Methylovorus sp. SIP3-4] gi|253987177|gb|ACT52034.1| DNA polymerase III, epsilon subunit [Methylovorus sp. SIP3-4] Length = 470 Score = 161 bits (406), Expect = 4e-37, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 74/173 (42%), Gaps = 5/173 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +PE PGVY LY+GK+ N++ R+ S+ ++ + + + ++ +I + Sbjct: 194 LDDIPEGPGVYLFYGDNQLPLYIGKSINIRSRVLSHFSGDHASTKEMRISQEVKHIEWIE 253 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKI-PALYKHRDSSTIQ--- 118 T E AL+LE+ ++K +P +N LR ++ + H P L R+ Sbjct: 254 TAGEFSALMLESRLVKERQPIYNRRLRRERQLCSWRLAASHDARPLLTLVREEEIDPPEL 313 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPC 171 G FG F S + + + L PC Q+++C G C Sbjct: 314 GQLFGTFRSKRQAVEVLRQIAENHALCP-KVLGLESGKGPCFSHQLRKCKGVC 365 >gi|119866029|gb|ABM05485.1| excinuclease ABC subunit C [Rhodiola fastigiata] Length = 133 Score = 161 bits (406), Expect = 5e-37, Method: Composition-based stats. Identities = 55/138 (39%), Positives = 82/138 (59%), Gaps = 7/138 (5%) Query: 455 KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK 514 Q PD+V++DGGKGQL+AA L L ++ + I S+AK + E F + + Sbjct: 2 SQVDKQKPLPDLVLIDGGKGQLNAAAETLNALGLQ-SLPIASLAKREE-----EIFLLGQ 55 Query: 515 GEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQ 573 ++L L R P L +Q+ RDEAHRFAIT RKRR + S L I G+G ++R LL Sbjct: 56 SDSLRLPRRSPALRMLQQARDEAHRFAITFRRKRRAVRTITSELLRIPGVGESKRRALLI 115 Query: 574 SFGTVKMISRSSPETLAS 591 +FG+++ + ++P+ LAS Sbjct: 116 AFGSIQAVREATPDQLAS 133 >gi|158319409|ref|YP_001511916.1| excinuclease ABC subunit C [Alkaliphilus oremlandii OhILAs] gi|158139608|gb|ABW17920.1| Excinuclease ABC C subunit domain protein [Alkaliphilus oremlandii OhILAs] Length = 338 Score = 160 bits (404), Expect = 7e-37, Method: Composition-based stats. Identities = 54/233 (23%), Positives = 103/233 (44%), Gaps = 15/233 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + MP PG+YQM DI G ++YVGK+ +L+ R++SY + + + +I M+ I +I + Sbjct: 11 KIDHMPLKPGIYQMKDIEGNIIYVGKSKSLRSRVRSYFYGEHESEKINRMVFHIEDIHYI 70 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT T +EA +LE +IK+L+P +N ++D+ + Y+ I +G Y Sbjct: 71 VTDTHLEAQILECALIKKLQPIYNQQFKNDQRYMYLKI---EAYNRFKPLSAVYEKEGHY 127 Query: 122 -FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 GPF + + + T+ Q + L ++ P + E + Sbjct: 128 CLGPFRNKNVLFDTVQFFQNIYPLCKNDHG-----------YEFIYKIFPESIEKEGFEI 176 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 ++ MN L+ +E A ++RD + ++++ + Sbjct: 177 NRNSLIEIFSNKDCMEGFITELQTQMNGFALELRFEMATMYRDMIHHMNYLYH 229 >gi|313202457|ref|YP_004041115.1| DNA polymerase III subunit epsilon [Methylovorus sp. MP688] gi|312441773|gb|ADQ85879.1| DNA polymerase III, epsilon subunit [Methylovorus sp. MP688] Length = 473 Score = 159 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 5/173 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +PE PGVY LY+GK+ N++ R+ S+ ++ + + + ++ +I + Sbjct: 194 LDDIPEGPGVYLFYGDNQLPLYIGKSINIRSRVLSHFSGDHASTKEMRISQEVKHIEWIE 253 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKI-PALYKHRDSSTIQ--- 118 T E AL+LE+ ++K +P +N LR ++ + + P L R+ Sbjct: 254 TAGEFGALMLESRLVKERQPIYNRRLRRERQLCSWRLAASYDARPLLTLVREEEIDPPEL 313 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPC 171 G FG F S + + + L PC Q+++C G C Sbjct: 314 GQLFGTFRSKRQAVEVLRQIAENHALCPKVLG-LESGKGPCFSHQLRKCKGVC 365 >gi|257416271|ref|ZP_05593265.1| excinuclease subunit ABC [Enterococcus faecalis AR01/DG] gi|257158099|gb|EEU88059.1| excinuclease subunit ABC [Enterococcus faecalis ARO1/DG] Length = 320 Score = 159 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 54/236 (22%), Positives = 100/236 (42%), Gaps = 21/236 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + Q+P PGVY M D ++YVGKA L+ R+ SY +S+ H+ + ++ QI + Sbjct: 8 KARQLPLTPGVYLMKDATDTIIYVGKAKKLKNRVSSYFINSHQHSRKTMRLVKQIIDFDV 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE++ALLLE +I++ +PR+N + + + Y+ + + L + + + Sbjct: 68 LHTDTELDALLLECQLIQQYRPRYNRQMNAYEQYSYVSVAVNER--QLEIKLLNIPTKEN 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 FGP++ + + L + L ++ S T E + Sbjct: 126 CFGPYSIRRKLNRLKIILDSIYDLVPTNYWH----------QTFQKESAIPTELFQQELF 175 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 F ++IA+ M +A K+ +E A ++ L+ N N Sbjct: 176 --------DFFHNQGQEPIKRIAQQMQEAAEKQAFEKAAKLKEDWLFLTRFANQNQ 223 >gi|257079194|ref|ZP_05573555.1| predicted protein [Enterococcus faecalis JH1] gi|294779407|ref|ZP_06744808.1| GIY-YIG catalytic domain protein [Enterococcus faecalis PC1.1] gi|256987224|gb|EEU74526.1| predicted protein [Enterococcus faecalis JH1] gi|294453536|gb|EFG21937.1| GIY-YIG catalytic domain protein [Enterococcus faecalis PC1.1] Length = 320 Score = 159 bits (402), Expect = 1e-36, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 100/236 (42%), Gaps = 21/236 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + Q+P PGVY M D ++YVGKA L+ R+ SY +SN H+ + ++ QI + Sbjct: 8 KAHQLPLTPGVYLMKDATDTIIYVGKAKKLKNRVSSYFINSNQHSRKTMRLVKQIIDFDV 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE++ALLLE +I++ +PR+N + + + Y+ + + L + + + Sbjct: 68 LHTDTELDALLLECQLIQQYRPRYNRQMNAYEQYSYVSVAVNER--QLEIKLLNIPTKEN 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 FGP++ + + L + L ++ S T E + Sbjct: 126 CFGPYSIRRKLNRLKIILDSIYDLVPTNYWH----------QTFQKESAIPTELFQQELF 175 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 F ++IA+ M +A K+ +E A ++ L+ N N Sbjct: 176 --------DFFHNQGREPIKQIAQQMQEAAEKQAFEKAAKLKEDWLFLTRFANQNQ 223 >gi|257422383|ref|ZP_05599373.1| endo/excinuclease amino terminal domain-containing protein [Enterococcus faecalis X98] gi|257164207|gb|EEU94167.1| endo/excinuclease amino terminal domain-containing protein [Enterococcus faecalis X98] gi|315156100|gb|EFU00117.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0043] Length = 320 Score = 159 bits (402), Expect = 1e-36, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 100/236 (42%), Gaps = 21/236 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + Q+P PGVY M D ++YVGKA L+ R+ SY +SN H+ + ++ QI + Sbjct: 8 KAHQLPLTPGVYLMKDATDTIIYVGKAKKLKNRVSSYFINSNQHSRKTMRLVKQIIDFDV 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE++ALLLE +I++ +PR+N + + + Y+ + + L + + + Sbjct: 68 LHTDTELDALLLECQLIQQYRPRYNRQMNAYEQYSYVSVAVNER--QLEIKLLNIPTKEN 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 FGP++ + + L + L ++ S T E + Sbjct: 126 CFGPYSIRRKLNRLKIILDNIYDLVPTNYWH----------QTFQKESAIPTELFQQELF 175 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 F ++IA+ M +A K+ +E A ++ L+ N N Sbjct: 176 --------DFFHNQGREPIKRIAQQMQEAAEKQAFEKAAKLKEDWLFLTRFANQNQ 223 >gi|29376299|ref|NP_815453.1| endo/excinuclease amino terminal domain-containing protein [Enterococcus faecalis V583] gi|227518938|ref|ZP_03948987.1| excision endonuclease subunit UvrC [Enterococcus faecalis TX0104] gi|227553557|ref|ZP_03983606.1| excision endonuclease subunit UvrC [Enterococcus faecalis HH22] gi|256959157|ref|ZP_05563328.1| predicted protein [Enterococcus faecalis DS5] gi|256961748|ref|ZP_05565919.1| predicted protein [Enterococcus faecalis Merz96] gi|256964944|ref|ZP_05569115.1| predicted protein [Enterococcus faecalis HIP11704] gi|257085006|ref|ZP_05579367.1| endo/excinuclease [Enterococcus faecalis Fly1] gi|293383455|ref|ZP_06629368.1| endo/excinuclease amino domain protein [Enterococcus faecalis R712] gi|293388891|ref|ZP_06633376.1| endo/excinuclease amino domain protein [Enterococcus faecalis S613] gi|307273040|ref|ZP_07554286.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0855] gi|312907716|ref|ZP_07766707.1| GIY-YIG catalytic domain protein [Enterococcus faecalis DAPTO 512] gi|312910334|ref|ZP_07769181.1| GIY-YIG catalytic domain protein [Enterococcus faecalis DAPTO 516] gi|29343762|gb|AAO81523.1| endo/excinuclease amino terminal domain protein [Enterococcus faecalis V583] gi|227073627|gb|EEI11590.1| excision endonuclease subunit UvrC [Enterococcus faecalis TX0104] gi|227177314|gb|EEI58286.1| excision endonuclease subunit UvrC [Enterococcus faecalis HH22] gi|256949653|gb|EEU66285.1| predicted protein [Enterococcus faecalis DS5] gi|256952244|gb|EEU68876.1| predicted protein [Enterococcus faecalis Merz96] gi|256955440|gb|EEU72072.1| predicted protein [Enterococcus faecalis HIP11704] gi|256993036|gb|EEU80338.1| endo/excinuclease [Enterococcus faecalis Fly1] gi|291079246|gb|EFE16610.1| endo/excinuclease amino domain protein [Enterococcus faecalis R712] gi|291081672|gb|EFE18635.1| endo/excinuclease amino domain protein [Enterococcus faecalis S613] gi|306510025|gb|EFM79049.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0855] gi|310626744|gb|EFQ10027.1| GIY-YIG catalytic domain protein [Enterococcus faecalis DAPTO 512] gi|311289607|gb|EFQ68163.1| GIY-YIG catalytic domain protein [Enterococcus faecalis DAPTO 516] gi|315037160|gb|EFT49092.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0027] gi|315576041|gb|EFU88232.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0309B] gi|315580616|gb|EFU92807.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0309A] gi|327535314|gb|AEA94148.1| endo/excinuclease amino domain protein [Enterococcus faecalis OG1RF] Length = 320 Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 100/236 (42%), Gaps = 21/236 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + Q+P PGVY M D ++YVGKA L+ R+ SY +SN H+ + ++ QI + Sbjct: 8 KAHQLPLTPGVYLMKDATDTIIYVGKAKKLKNRVSSYFINSNQHSRKTMRLVKQIIDFDV 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE++ALLLE +I++ +PR+N + + + Y+ + + L + + + Sbjct: 68 LHTDTELDALLLECQLIQQYRPRYNRQMNAYEQYSYVSVAVNER--QLEIKLLNIPTKEN 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 FGP++ + + L + L ++ S T E + Sbjct: 126 CFGPYSIRRKLNRLKIILDSIYDLVPTNYWH----------QTFQKESAIPTELFQQELF 175 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 F ++IA+ M +A K+ +E A ++ L+ N N Sbjct: 176 --------DFFHNQGREPIKRIAQQMQEAAEKQAFEKAAKLKEDWLFLTRFANQNQ 223 >gi|256762736|ref|ZP_05503316.1| predicted protein [Enterococcus faecalis T3] gi|257090065|ref|ZP_05584426.1| predicted protein [Enterococcus faecalis CH188] gi|307269562|ref|ZP_07550901.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX4248] gi|307289289|ref|ZP_07569245.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0109] gi|312903499|ref|ZP_07762679.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0635] gi|256683987|gb|EEU23682.1| predicted protein [Enterococcus faecalis T3] gi|256998877|gb|EEU85397.1| predicted protein [Enterococcus faecalis CH188] gi|306499998|gb|EFM69359.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0109] gi|306514182|gb|EFM82758.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX4248] gi|310633375|gb|EFQ16658.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0635] gi|315147446|gb|EFT91462.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX4244] gi|315162434|gb|EFU06451.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0645] gi|315163903|gb|EFU07920.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX1302] gi|315167289|gb|EFU11306.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX1341] gi|315577805|gb|EFU89996.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0630] Length = 320 Score = 159 bits (401), Expect = 2e-36, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 100/236 (42%), Gaps = 21/236 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + Q+P PGVY M D ++YVGKA L+ R+ SY +SN H+ + ++ QI + Sbjct: 8 KAHQLPLTPGVYLMKDATDTIIYVGKAKKLKNRVSSYFINSNQHSRKTMRLVKQIIDFDV 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE++ALLLE +I++ +PR+N + + + Y+ + + L + + + Sbjct: 68 LHTDTELDALLLECQLIQQYRPRYNRQMNAYEQYSYVSVAVNER--QLEIKLLNIPTKEN 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 FGP++ + + L + L ++ S T E + Sbjct: 126 CFGPYSIRRKLNRLKIILDSIYDLVPTNYWH----------QTFQKESAIPTELFQQELF 175 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 F ++IA+ M +A K+ +E A ++ L+ N N Sbjct: 176 --------DFFHNQGREPIKRIAQQMQEAAEKQAFEKAAKLKEDWLFLTRFANQNQ 223 >gi|255975669|ref|ZP_05426255.1| predicted protein [Enterococcus faecalis T2] gi|307277886|ref|ZP_07558970.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0860] gi|255968541|gb|EET99163.1| predicted protein [Enterococcus faecalis T2] gi|306505283|gb|EFM74469.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0860] Length = 320 Score = 159 bits (401), Expect = 2e-36, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 100/236 (42%), Gaps = 21/236 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + Q+P PGVY M D ++YVGKA L+ R+ SY +SN H+ + ++ QI + Sbjct: 8 KAHQLPLTPGVYLMKDATDTIIYVGKAKKLKNRVSSYFINSNQHSRKTMRLVKQIIDFDV 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE++ALLLE +I++ +PR+N + + + Y+ + + L + + + Sbjct: 68 LHTDTELDALLLECQLIQQYRPRYNRQMNAYEQYSYVSVAVNER--QLEIKLLNIPTKKN 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 FGP++ + + L + L ++ S T E + Sbjct: 126 CFGPYSIRRKLNRLKIILDSIYDLVPTNYWH----------QTFQKESAIPTELFQQELF 175 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 F ++IA+ M +A K+ +E A ++ L+ N N Sbjct: 176 --------DFFHNQGREPIKRIAQQMQEAAEKQAFEKAAKLKEDWLFLTRFANQNQ 223 >gi|297171376|gb|ADI22380.1| nuclease subunit of the excinuclease complex [uncultured nuHF2 cluster bacterium HF0500_02A10] Length = 134 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 48/124 (38%), Positives = 66/124 (53%), Gaps = 1/124 (0%) Query: 51 MISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYK 110 MI QI + V +E E+L+LEAN+IK KPRFNI LRDDK +PYI +T + P ++ Sbjct: 1 MIRQIVEVDTIVVGSETESLILEANLIKEHKPRFNIQLRDDKRYPYIKVTIQEAFPRVFV 60 Query: 111 HRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCA-DSVFRHRTRPCLLFQIKRCSG 169 R YFGP+ SV + + ++R + +RSC D RPCL + I G Sbjct: 61 TRRLEDDGSQYFGPYTSVGLMRDALEVVKRLYTVRSCRYDLPKESPERPCLDYHIGPLLG 120 Query: 170 PCTG 173 Sbjct: 121 SLCR 124 >gi|313791823|gb|EFS39934.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA1] Length = 597 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 75/381 (19%), Positives = 141/381 (37%), Gaps = 15/381 (3%) Query: 3 SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57 ++ + E PGVY LD LYVGK+ N+++R+ Y ++ R+ M+ Sbjct: 225 AKDLTEGPGVYWFCLDKPAPAHPEALYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 284 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117 ++ T++EA + E +I +PR+N R S ++ +T P L + + Sbjct: 285 VKARECSTQLEAGVRELRLIDAHQPRYNHRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 343 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 +GPF S A + L F LR C+ ++ RH C L ++ RCS PC Sbjct: 344 SQPPWGPFISRQAATRAAIILAEAFGLRQCSGAMSRHPDG-CPLAEMGRCSAPC--LNPY 400 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 Y V A+ ++G +L +++A+ + + + E +E A + + Sbjct: 401 VDYSTIVGFARLAMTGDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 460 Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + + C + ++ A + G+ G L D + + Sbjct: 461 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGIDPMPIIDAVCATA-----ET 515 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P L + EE L+ F + V + ++ + A + Sbjct: 516 VSAPPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTDDLAARVAALHHP 575 Query: 357 STEISHQMILKDFTKKFALPH 377 S + +D + L Sbjct: 576 GHNESDETDSQDRQARPQLTP 596 >gi|257883027|ref|ZP_05662680.1| excinuclease ABC subunit C [Enterococcus faecium 1,231,502] gi|257818685|gb|EEV46013.1| excinuclease ABC subunit C [Enterococcus faecium 1,231,502] Length = 301 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 95/236 (40%), Gaps = 21/236 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + +P PGVY M D G+V+YVGKA L+ R+ SY + H+ ++ MI I + F Sbjct: 5 KMKTLPMLPGVYLMKDRDGKVIYVGKAKRLKNRVSSYFHQNKQHSKKVLRMIHHITDFDF 64 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE++ALLLE +I+ +P +N + ++ Y+ IT+K + Sbjct: 65 VVVDTELDALLLECQLIQHYRPFYNRQMNYFSNYNYVHITNKG----FVLTDTPT---AR 117 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 +GPF + + ++ T+ + L ++ + Sbjct: 118 TYGPFRLYKKMPSILRIMEETYQMPW-------------LSEISLLALRVQLPDLQEMTF 164 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + E + G N L + + + ++E A + + + +++ Sbjct: 165 EQKKKELQGLFQGRNKKLLTYLKKRQQHFIYQLNFEKAGMLQKDIELVTYFIRRIQ 220 >gi|262202943|ref|YP_003274151.1| DNA polymerase III subunit epsilon [Gordonia bronchialis DSM 43247] gi|262086290|gb|ACY22258.1| DNA polymerase III, epsilon subunit [Gordonia bronchialis DSM 43247] Length = 595 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 52/239 (21%), Positives = 93/239 (38%), Gaps = 9/239 (3%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++++P PGVY + VLYVG A +L++R++SY ++ RI M+ + + Sbjct: 232 ADKIPARPGVYLFRGPSDEVLYVGTAVDLRRRVRSYFTGSDPRRRIGEMVRLAHRVDHVE 291 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +EA + E ++ P +N + ++++T + P L R S Sbjct: 292 CSHGLEAAVRELRLLGAHAPAYNRKSKQPHRGWWVVLT-AERFPRLKVSRSPSADT---I 347 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLL-----FQIKRCSGPCTGEISS 177 GP + + + LR+C C L + C + Sbjct: 348 GPVGNRTTAATIADVISAAAGLRTCTGRAGADGYHWCRLPEPGAATVGLCHASSRRPQTL 407 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 Y+ V A +SG + L +A + A+ + +E+A HRDRLA Sbjct: 408 TDYLPRVTAAAALMSGADDALLTALADRVVAASAAQMFETAARHRDRLALTIDALARCQ 466 >gi|257419472|ref|ZP_05596466.1| predicted protein [Enterococcus faecalis T11] gi|257161300|gb|EEU91260.1| predicted protein [Enterococcus faecalis T11] Length = 320 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 99/236 (41%), Gaps = 21/236 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + Q+P PGVY M D ++YVGKA L+ R+ SY +SN H+ + ++ QI + Sbjct: 8 KAHQLPLTPGVYLMKDATDTIIYVGKAKKLKNRVSSYFINSNQHSRKTMRLVKQIIDFDV 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE++ALLLE +I++ +PR+N + + + Y+ + + L + + + Sbjct: 68 LHTDTELDALLLECQLIQQYRPRYNRQMNAYEQYSYVSVAVNER--QLEIKLLNIPTKEN 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 FGP++ + + L + L ++ S T E + Sbjct: 126 CFGPYSIRRKLNRLKIILDSIYDLVPTNYWH----------QTFQKESAIPTELFQQELF 175 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 F ++IA+ M A K+ +E A ++ L+ N N Sbjct: 176 --------DFFHNQGREPIKRIAQQMQDAAEKQAFEKAAKLKEDWLFLTRFANQNQ 223 >gi|312901845|ref|ZP_07761110.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0470] gi|311291038|gb|EFQ69594.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0470] Length = 320 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 99/236 (41%), Gaps = 21/236 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + Q+P PGVY M D ++YVGKA L+ R+ SY +SN H+ + ++ QI + Sbjct: 8 KAHQLPLTPGVYLMKDATDTIIYVGKAKKLKNRVSSYFINSNQHSRKTMRLVKQIIDFDV 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE++ALLLE +I++ +PR+N + + + Y+ + + L + + + Sbjct: 68 LHTDTELDALLLECQLIQQYRPRYNRQMNAYEQYSYVSVAVNER--QLEIKLLNIPTKEN 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 FGP++ + L + L ++ S T E + Sbjct: 126 CFGPYSIRRKLNHLKIILDSIYDLVPTNYWH----------QTFQKESAIPTELFQQELF 175 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 F ++IA+ M +A K+ +E A ++ L+ N N Sbjct: 176 --------DFFHNQGREPIKRIAQQMQEAAEKQAFEKAAKLKEDWLFLTRFANQNQ 223 >gi|327452827|gb|EGE99481.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL092PA1] Length = 587 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 75/381 (19%), Positives = 141/381 (37%), Gaps = 15/381 (3%) Query: 3 SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57 ++ + E PGVY LD LYVGK+ N+++R+ Y ++ R+ M+ Sbjct: 215 AKDLTEGPGVYWFCLDKPAPAHPEALYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 274 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117 ++ T++EA + E +I +PR+N R S ++ +T P L + + Sbjct: 275 VKARECSTQLEAGVRELRLIDAHQPRYNHRSRRQGSVWWVTLT-HEAHPRLAVVQRAPRD 333 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 +GPF S A + L F LR C+ ++ RH C L ++ RCS PC Sbjct: 334 SQPPWGPFISRQAATRAAIILAEAFGLRQCSGAMSRHPDG-CPLAEMGRCSAPC--LNPY 390 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237 Y V A+ ++G +L +++A+ + + + E +E A + + Sbjct: 391 VDYSTIVGFARLAMTGDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 450 Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296 + + C + ++ A + G+ G L D + + Sbjct: 451 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGIDPMPIIDAVCATA-----ET 505 Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356 P L + EE L+ F + V + ++ + A + Sbjct: 506 VSAPPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTDDLAARVAALHHP 565 Query: 357 STEISHQMILKDFTKKFALPH 377 S + +D + L Sbjct: 566 GHNESDETDSQDRQARPQLTP 586 >gi|261208993|ref|ZP_05923398.1| excinuclease ABC [Enterococcus faecium TC 6] gi|294614993|ref|ZP_06694882.1| excinuclease ABC, C subunit [Enterococcus faecium E1636] gi|294619083|ref|ZP_06698578.1| excinuclease ABC, C subunit [Enterococcus faecium E1679] gi|260077032|gb|EEW64754.1| excinuclease ABC [Enterococcus faecium TC 6] gi|291592124|gb|EFF23744.1| excinuclease ABC, C subunit [Enterococcus faecium E1636] gi|291594744|gb|EFF26126.1| excinuclease ABC, C subunit [Enterococcus faecium E1679] Length = 321 Score = 158 bits (399), Expect = 3e-36, Method: Composition-based stats. Identities = 55/304 (18%), Positives = 114/304 (37%), Gaps = 21/304 (6%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + +P PGVY M D G+V+YVGKA L+ R+ SY + H+ ++ MI I + F Sbjct: 5 KMKTLPMLPGVYLMKDRDGKVIYVGKAKRLKNRVSSYFHQNKQHSKKVLRMIHHITDFDF 64 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE++ALLLE +I+ +P +N + ++ Y+ IT+K + Sbjct: 65 VVVDTELDALLLECQLIQHYRPFYNRQMNYFSNYNYVHITNKG----FVLTDTPT---AR 117 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 +GPF + + ++ T+ + L ++ + Sbjct: 118 TYGPFRLYKKMPSILRIMEETYQMPW-------------LSEISLLALRAQLPDLQEMTF 164 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 + E + G N L + + + ++E A + + + +++ + Sbjct: 165 EQKKKELQGLFQGQNKKLLTYLKKRQQHFIYQLNFEKAGMLQKDIELVTYFIRRIQEQKH 224 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 + SL + LA ++ H+ G + ++ + + Sbjct: 225 FLRTPSLTFSMPLAADESQKKHYLVCYGQLAETMIASADVSPDFYYEKKEAHLSLKRQLS 284 Query: 301 ENIL 304 + + Sbjct: 285 KEEI 288 >gi|329571851|gb|EGG53529.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX1467] Length = 245 Score = 158 bits (399), Expect = 3e-36, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 100/236 (42%), Gaps = 21/236 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + Q+P PGVY M D ++YVGKA L+ R+ SY +SN H+ + ++ QI + Sbjct: 8 KAHQLPLTPGVYLMKDATDTIIYVGKAKKLKNRVSSYFINSNQHSRKTMRLVKQIIDFDV 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE++ALLLE +I++ +PR+N + + + Y+ + + L + + + Sbjct: 68 LHTDTELDALLLECQLIQQYRPRYNRQMNAYEQYSYVSVAVNER--QLEIKLLNIPTKEN 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 FGP++ + + L + L ++ S T E + Sbjct: 126 CFGPYSIRRKLNRLKIILDSIYDLVPTNYWH----------QTFQKESAIPTELFQQELF 175 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 F ++IA+ M +A K+ +E A ++ L+ N N Sbjct: 176 --------DFFHNQGREPIKRIAQQMQEAAEKQAFEKAAKLKEDWLFLTRFANQNQ 223 >gi|258614415|ref|ZP_05712185.1| endo/excinuclease amino terminal domain-containing protein [Enterococcus faecium DO] Length = 336 Score = 158 bits (399), Expect = 3e-36, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 95/236 (40%), Gaps = 21/236 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + +P PGVY M D G+V+YVGKA L+ R+ SY + H+ ++ MI I + F Sbjct: 20 KMKTLPMLPGVYLMKDRDGKVIYVGKAKRLKNRVSSYFHQNKQHSKKVLRMIHHITDFDF 79 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE++ALLLE +I+ +P +N + ++ Y+ IT+K + Sbjct: 80 VVVDTELDALLLECQLIQHYRPFYNRQMNYFSNYNYVHITNKG----FVLTDTPT---AR 132 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 +GPF + + ++ T+ + L ++ + Sbjct: 133 TYGPFRLYKKMPSILRIMEETYQMPW-------------LSEISLLALRVQLPDLQEMTF 179 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + E + G N L + + + ++E A + + + +++ Sbjct: 180 EQKKKELQGLFQGRNKKLLTYLKKRQQHFIYQLNFEKAGMLQKDIELVTYFIRRIQ 235 >gi|229549829|ref|ZP_04438554.1| excision endonuclease subunit UvrC [Enterococcus faecalis ATCC 29200] gi|255972556|ref|ZP_05423142.1| predicted protein [Enterococcus faecalis T1] gi|312951680|ref|ZP_07770575.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0102] gi|229305098|gb|EEN71094.1| excision endonuclease subunit UvrC [Enterococcus faecalis ATCC 29200] gi|255963574|gb|EET96050.1| predicted protein [Enterococcus faecalis T1] gi|310630397|gb|EFQ13680.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0102] gi|315152299|gb|EFT96315.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0031] gi|315158259|gb|EFU02276.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0312] gi|323480908|gb|ADX80347.1| excision endonuclease subunit UvrC [Enterococcus faecalis 62] Length = 320 Score = 158 bits (399), Expect = 3e-36, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 100/236 (42%), Gaps = 21/236 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + Q+P PGVY M D ++YVGKA L+ R+ SY +SN H+ + ++ QI + Sbjct: 8 KAHQLPLTPGVYLMKDATDTIIYVGKAKKLKNRVSSYFINSNQHSRKTMRLVKQIIDFDV 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE++ALLLE +I++ +PR+N + + + Y+ + + L + + + Sbjct: 68 LHTDTELDALLLECQLIQQYRPRYNRQMNAYEQYSYVSVAVNER--QLEIKLLNIPTKKN 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 FGP++ + + L + L ++ S T E + Sbjct: 126 CFGPYSIRRKLNRLKIILDSIYDLVPTNYWH----------QTFQKESAIPTELFQQELF 175 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 F ++IA+ M +A K+ +E A ++ L+ N N Sbjct: 176 --------DFFHNQGREPIKRIAQQMQEAAEKQAFEKAAKLKEDWLFLTRFANQNQ 223 >gi|229545638|ref|ZP_04434363.1| excision endonuclease subunit UvrC [Enterococcus faecalis TX1322] gi|256619244|ref|ZP_05476090.1| predicted protein [Enterococcus faecalis ATCC 4200] gi|256853304|ref|ZP_05558674.1| endo/excinuclease amino terminal domain-containing protein [Enterococcus faecalis T8] gi|300860859|ref|ZP_07106946.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TUSoD Ef11] gi|307275789|ref|ZP_07556928.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX2134] gi|307291812|ref|ZP_07571683.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0411] gi|229309206|gb|EEN75193.1| excision endonuclease subunit UvrC [Enterococcus faecalis TX1322] gi|256598771|gb|EEU17947.1| predicted protein [Enterococcus faecalis ATCC 4200] gi|256711763|gb|EEU26801.1| endo/excinuclease amino terminal domain-containing protein [Enterococcus faecalis T8] gi|300849898|gb|EFK77648.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TUSoD Ef11] gi|306497078|gb|EFM66624.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0411] gi|306507481|gb|EFM76612.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX2134] gi|315031990|gb|EFT43922.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0017] gi|315144989|gb|EFT89005.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX2141] gi|315174808|gb|EFU18825.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX1346] Length = 320 Score = 158 bits (399), Expect = 3e-36, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 100/236 (42%), Gaps = 21/236 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + Q+P PGVY M D ++YVGKA L+ R+ SY +SN H+ + ++ QI + Sbjct: 8 KAHQLPLTPGVYLMKDATDTIIYVGKAKKLKNRVSSYFINSNQHSRKTMRLVKQIIDFDV 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE++ALLLE +I++ +PR+N + + + Y+ + + L + + + Sbjct: 68 LHTDTELDALLLECQLIQQYRPRYNRQMNAYEQYSYVSVAVNER--QLEIKLLNIPTKEN 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 FGP++ + + L + L ++ S T E + Sbjct: 126 CFGPYSIRRKLNRLKIILDSIYDLVPTNYWH----------QTFQKESAIPTELFQQELF 175 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 F ++IA+ M +A K+ +E A ++ L+ N N Sbjct: 176 --------DFFHNQGREPIKRIAQQMQEAAEKQAFEKAAKLKEDWLFLTRFANQNQ 223 >gi|269219439|ref|ZP_06163293.1| putative DNA polymerase III, epsilon subunit [Actinomyces sp. oral taxon 848 str. F0332] gi|269211135|gb|EEZ77475.1| putative DNA polymerase III, epsilon subunit [Actinomyces sp. oral taxon 848 str. F0332] Length = 589 Score = 157 bits (398), Expect = 3e-36, Method: Composition-based stats. Identities = 68/314 (21%), Positives = 109/314 (34%), Gaps = 9/314 (2%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 PG+Y+ + AG VLYVG + NL+ R++ Y + R+ M T T + Sbjct: 246 RSPGIYRFIGPAGDVLYVGSSSNLRARVRQYFTAAETRKRMAEMTDLAERAEVDETPTVL 305 Query: 68 EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGSYFGPFA 126 EA +LE I P +N R + P++ +T P L + + GPF Sbjct: 306 EARILELRQIAEFDPPYNRRSRRPDNRPWLTLT-DEAHPRLKVTASLAMEDAAAALGPFG 364 Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 S A + + LR+C + R PC L + RCS PC + Sbjct: 365 SRKAARQAAELVADDARLRTCTTRLPAKPSGRKAPCHLHAMGRCSAPCALPGDPDG--PS 422 Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--R 241 + A L G L E+ + + E +E A + RDRL + + I Sbjct: 423 LAAASSILGGDLDGLWERSMQRLASLAAAERFEQAAVERDRLRCVIDAARRRERILPLLA 482 Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301 + H+G+ T D A++++ + P Sbjct: 483 ARQIVGARRDDDGSWDVAVIHWGRLAATGRCPGNADPRELAAELVASASQTDRPAAPGDV 542 Query: 302 NILLSEEAEETSLL 315 + E L Sbjct: 543 ASIEETELLAAWLW 556 >gi|257082375|ref|ZP_05576736.1| predicted protein [Enterococcus faecalis E1Sol] gi|256990405|gb|EEU77707.1| predicted protein [Enterococcus faecalis E1Sol] Length = 320 Score = 157 bits (398), Expect = 4e-36, Method: Composition-based stats. Identities = 54/236 (22%), Positives = 100/236 (42%), Gaps = 21/236 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + Q+P PGVY M D ++YVGKA L+ R+ SY +S+ H+ + ++ QI + Sbjct: 8 KAHQLPLTPGVYLMKDATDTIIYVGKAKKLKNRVSSYFINSHQHSRKTMRLVKQIIDFDV 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE++ALLLE +I++ +PR+N + + + Y+ + + L + + + Sbjct: 68 LHTDTELDALLLECQLIQQYRPRYNRQMNAYEQYSYVSVAVNER--QLEIKLLNIPTKEN 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 FGP++ + + L + L ++ S T E + Sbjct: 126 CFGPYSIRRKLNRLKIILDSIYDLVPTNYWH----------QTFQKESAIPTELFQQELF 175 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 F ++IA+ M +A K+ +E A ++ L+ N N Sbjct: 176 --------DFFHNQGREPIKRIAQQMQEAAEKQAFEKAAKLKEDWLFLTRFANQNQ 223 >gi|315169641|gb|EFU13658.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX1342] Length = 320 Score = 157 bits (397), Expect = 4e-36, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 99/236 (41%), Gaps = 21/236 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + Q+P PGVY M D ++YVGKA L+ R+ SY +SN H+ + ++ QI + Sbjct: 8 KAHQLPLTPGVYLMKDATDTIIYVGKAKKLKNRVSSYFINSNQHSRKTMRLVKQIIDFDV 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE++ALLLE +I + +PR+N + + + Y+ + + L + + + Sbjct: 68 LHTDTELDALLLECQLIHQYRPRYNRQMNAYEQYSYVSVAVNER--QLEIKLLNIPTKEN 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 FGP++ + + L + L ++ S T E + Sbjct: 126 CFGPYSIRRKLNRLKIILDSIYDLVPTNYWH----------QTFQKESAIPTELFQQELF 175 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 F ++IA+ M +A K+ +E A ++ L+ N N Sbjct: 176 --------DFFHNQGREPIKRIAQQMQEAAEKQAFEKAAKLKEDWLFLTRFANQNQ 223 >gi|69245723|ref|ZP_00603589.1| Excinuclease ABC, C subunit, N-terminal [Enterococcus faecium DO] gi|257880226|ref|ZP_05659879.1| excinuclease ABC [Enterococcus faecium 1,230,933] gi|257891390|ref|ZP_05671043.1| excinuclease ABC [Enterococcus faecium 1,231,410] gi|260560476|ref|ZP_05832650.1| excinuclease ABC [Enterococcus faecium C68] gi|293563295|ref|ZP_06677745.1| endo/excinuclease amino domain protein [Enterococcus faecium E1162] gi|294621378|ref|ZP_06700550.1| endo/excinuclease amino domain protein [Enterococcus faecium U0317] gi|314939232|ref|ZP_07846486.1| GIY-YIG catalytic domain protein [Enterococcus faecium TX0133a04] gi|314942050|ref|ZP_07848908.1| GIY-YIG catalytic domain protein [Enterococcus faecium TX0133C] gi|314951231|ref|ZP_07854286.1| GIY-YIG catalytic domain protein [Enterococcus faecium TX0133A] gi|314991654|ref|ZP_07857124.1| GIY-YIG catalytic domain protein [Enterococcus faecium TX0133B] gi|314996780|ref|ZP_07861793.1| GIY-YIG catalytic domain protein [Enterococcus faecium TX0133a01] gi|68195616|gb|EAN10056.1| Excinuclease ABC, C subunit, N-terminal [Enterococcus faecium DO] gi|257814454|gb|EEV43212.1| excinuclease ABC [Enterococcus faecium 1,230,933] gi|257827750|gb|EEV54376.1| excinuclease ABC [Enterococcus faecium 1,231,410] gi|260073478|gb|EEW61806.1| excinuclease ABC [Enterococcus faecium C68] gi|291599025|gb|EFF30070.1| endo/excinuclease amino domain protein [Enterococcus faecium U0317] gi|291604747|gb|EFF34231.1| endo/excinuclease amino domain protein [Enterococcus faecium E1162] gi|313589075|gb|EFR67920.1| GIY-YIG catalytic domain protein [Enterococcus faecium TX0133a01] gi|313593745|gb|EFR72590.1| GIY-YIG catalytic domain protein [Enterococcus faecium TX0133B] gi|313596583|gb|EFR75428.1| GIY-YIG catalytic domain protein [Enterococcus faecium TX0133A] gi|313599176|gb|EFR78021.1| GIY-YIG catalytic domain protein [Enterococcus faecium TX0133C] gi|313641483|gb|EFS06063.1| GIY-YIG catalytic domain protein [Enterococcus faecium TX0133a04] Length = 321 Score = 157 bits (397), Expect = 5e-36, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 95/236 (40%), Gaps = 21/236 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + +P PGVY M D G+V+YVGKA L+ R+ SY + H+ ++ MI I + F Sbjct: 5 KMKTLPMLPGVYLMKDRDGKVIYVGKAKRLKNRVSSYFHQNKQHSKKVLRMIHHITDFDF 64 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE++ALLLE +I+ +P +N + ++ Y+ IT+K + Sbjct: 65 VVVDTELDALLLECQLIQHYRPFYNRQMNYFSNYNYVHITNKG----FVLTDTPT---AR 117 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 +GPF + + ++ T+ + L ++ + Sbjct: 118 TYGPFRLYKKMPSILRIMEETYQMPW-------------LSEISLLALRVQLPDLQEMTF 164 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + E + G N L + + + ++E A + + + +++ Sbjct: 165 EQKKKELQGLFQGRNKKLLTYLKKRQQHFIYQLNFEKAGMLQKDIELVTYFIRRIQ 220 >gi|91775906|ref|YP_545662.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus KT] gi|91709893|gb|ABE49821.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus KT] Length = 462 Score = 157 bits (397), Expect = 5e-36, Method: Composition-based stats. Identities = 47/182 (25%), Positives = 78/182 (42%), Gaps = 5/182 (2%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +PE PGVY LY+GK+ NL+ R+ S+ +S++ R + +I +I + T Sbjct: 195 DDIPEAPGVYIFYGENDLPLYIGKSVNLRNRVLSHFNSDHARARGMRITQEIKHIEWIET 254 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDK-HKIPALYKHRD---SSTIQG 119 E ALLLEA +IK +P N LR ++ + + P L + + G Sbjct: 255 AGEFGALLLEARLIKERQPIHNRQLRREQQLCSWHLAPSATQHPLLTLVAQDEMTQDLLG 314 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 +G + + + + L L PC +Q+KRC G C + E Sbjct: 315 ELYGTYRTKRQAIEALRQLALVHGLCPQYLG-LESGNGPCFSYQLKRCKGVCCHQEPPEM 373 Query: 180 YM 181 + Sbjct: 374 HY 375 >gi|331696575|ref|YP_004332814.1| DNA polymerase III subunit epsilon [Pseudonocardia dioxanivorans CB1190] gi|326951264|gb|AEA24961.1| DNA polymerase III, epsilon subunit [Pseudonocardia dioxanivorans CB1190] Length = 586 Score = 157 bits (397), Expect = 5e-36, Method: Composition-based stats. Identities = 50/209 (23%), Positives = 86/209 (41%), Gaps = 6/209 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P GVY VLYVG + +L++R++SY + R+ M+S + V Sbjct: 230 ARDVPSAAGVYLFRGARDEVLYVGTSGDLRRRVRSYFTAAERRRRMRDMVSLAERVDTIV 289 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +EA + E +I +PR+N R+ ++ + P L Sbjct: 290 CAHALEAGVRELRLIAAHRPRYNRRSRNPGRAWWV-VPTDEAFPRLSVVTTPRAPA---L 345 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSEKY 180 GPF S + + +L LRSC + PC+L ++ RC PC G S +Y Sbjct: 346 GPFGSRRGATEAVETLLDALPLRSCTQRIPARSPAASPCVLHELGRCRAPCAGLQSVAEY 405 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQA 209 VH + ++G + ++A + Sbjct: 406 APGVHALQGLVAGADDAPLRRLADRVEAL 434 >gi|314948377|ref|ZP_07851766.1| GIY-YIG catalytic domain protein [Enterococcus faecium TX0082] gi|313645169|gb|EFS09749.1| GIY-YIG catalytic domain protein [Enterococcus faecium TX0082] Length = 321 Score = 157 bits (396), Expect = 6e-36, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 95/236 (40%), Gaps = 21/236 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + +P PGVY M D G+V+YVGKA L+ R+ SY + H+ ++ MI I + F Sbjct: 5 KMKTLPMLPGVYLMKDRDGKVIYVGKAKRLKNRVSSYFHQNKQHSKKVLRMILHITDFDF 64 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE++ALLLE +I+ +P +N + ++ Y+ IT+K + Sbjct: 65 VVVDTELDALLLECQLIQHYRPFYNRQMNYFSNYNYVHITNKG----FVLTDTPT---AR 117 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 +GPF + + ++ T+ + L ++ + Sbjct: 118 TYGPFRLYKKMPSILRIMEETYQMPW-------------LSEISLLALRVQLPDLQEMTF 164 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + E + G N L + + + ++E A + + + +++ Sbjct: 165 EQKKKELQGLFQGRNKKLLTYLKKRQQHFIYQLNFEKAGMLQKDIELVTYFIRRIQ 220 >gi|257087035|ref|ZP_05581396.1| excinuclease ABC [Enterococcus faecalis D6] gi|256995065|gb|EEU82367.1| excinuclease ABC [Enterococcus faecalis D6] gi|315027906|gb|EFT39838.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX2137] Length = 320 Score = 157 bits (396), Expect = 6e-36, Method: Composition-based stats. Identities = 54/236 (22%), Positives = 99/236 (41%), Gaps = 21/236 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + Q+P PGVY M D ++YVGKA L+ R+ SY +SN H+ + ++ QI + Sbjct: 8 KAHQLPLTPGVYLMKDATDTIIYVGKAKKLKNRVSSYFINSNQHSRKTMRLVKQIIDFDV 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE++ALLLE +I++ +PR+N + + + Y+ + + L + + + Sbjct: 68 LHTDTELDALLLECQLIQQYRPRYNRQMNAYEQYSYVSVAVNER--QLEIKLLNIPTKEN 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 FGP++ + + L + L ++ S T E + Sbjct: 126 CFGPYSIRRKLNRLKIILDSIYDLVPTNYWH----------QTFQKESAIPTELFQQELF 175 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 F ++IA+ M + K+ +E A ++ L+ N N Sbjct: 176 --------DFFHNQGREPIKRIAQQMQEVAEKQAFEKAAKLKEDWLFLTRFANQNQ 223 >gi|293556680|ref|ZP_06675244.1| endo/excinuclease amino domain protein [Enterococcus faecium E1039] gi|291601142|gb|EFF31430.1| endo/excinuclease amino domain protein [Enterococcus faecium E1039] Length = 321 Score = 157 bits (396), Expect = 6e-36, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 95/236 (40%), Gaps = 21/236 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + +P PGVY M D G+V+YVGKA L+ R+ SY + H+ ++ MI I + F Sbjct: 5 KMKTLPMLPGVYLMKDRDGKVIYVGKAKRLKNRVSSYFHQNKQHSKKVLRMIHHITDFDF 64 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE++ALLLE +I+ +P +N + ++ Y+ IT+K + Sbjct: 65 VVVDTELDALLLECQLIQHYRPFYNRQMNYFSNYNYVHITNKG----FVLTDTPT---AR 117 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 +GPF + + ++ T+ + L ++ + Sbjct: 118 TYGPFRLYKKMPSILRIMEETYQMPW-------------LSEISLLALRAQLPDLQEMTF 164 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + E + G N L + + + ++E A + + + +++ Sbjct: 165 EQKKKELQGLFQGRNKKLLTYLKKRQQHFIYQLNFEKAGMLQKDIELVTYFIRRIQ 220 >gi|293569290|ref|ZP_06680588.1| endo/excinuclease amino domain protein [Enterococcus faecium E1071] gi|291587996|gb|EFF19846.1| endo/excinuclease amino domain protein [Enterococcus faecium E1071] Length = 321 Score = 157 bits (396), Expect = 6e-36, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 94/236 (39%), Gaps = 21/236 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + +P PGVY M D G+V+YVGKA L+ R+ SY + H+ ++ MI I + F Sbjct: 5 KMKTLPMLPGVYLMKDRDGKVIYVGKAKRLKNRVSSYFHQNKQHSKKVLRMIHHITDFDF 64 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE++ALLLE +I+ +P +N + ++ Y+ IT+K + Sbjct: 65 VVVDTELDALLLECQLIQHYRPFYNRQMNYFSNYNYVHITNKG----FVLTDTPT---AR 117 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 +GPF + + ++ T+ + L ++ + Sbjct: 118 TYGPFRLYKKMPSILRIMEETYQMPW-------------LSEISLLALRAQLPDLQEMTF 164 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + E + G N L + + + ++E A + + +++ Sbjct: 165 EQKKKELQGLFQGRNKKLLTYLKKRQQHFIYQLNFEKAGMLHKDIELVTYFIRRIQ 220 >gi|261856008|ref|YP_003263291.1| DNA polymerase III subunit epsilon [Halothiobacillus neapolitanus c2] gi|261836477|gb|ACX96244.1| DNA polymerase III, epsilon subunit [Halothiobacillus neapolitanus c2] Length = 481 Score = 156 bits (395), Expect = 8e-36, Method: Composition-based stats. Identities = 50/180 (27%), Positives = 87/180 (48%), Gaps = 8/180 (4%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P+ PGVY M LY+GK+ +L++R+ + +++ + + + +I + T Sbjct: 210 DEIPDTPGVYLMYGDGALPLYIGKSIHLRRRVLDHFRNDHREQKEMRLAQAVQHIDWIET 269 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDK---SFPYILITDKHKIPALYKHRDSSTIQGS 120 E+ ALLLE+ +IK L P FN LR + ++ ++ + P L R I GS Sbjct: 270 PGELSALLLESRLIKTLSPLFNRKLRRTRDLCTWHWVF--GNVQPPRLL--RGDDVIPGS 325 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 +GPF ++ + L L + + PC QIKRC G C G+ S ++ Sbjct: 326 CYGPFRHATQAKQVLRELAAKHGLCDIRLG-LQSGSGPCFAHQIKRCRGVCVGQESPMQH 384 >gi|257869161|ref|ZP_05648814.1| excinuclease ABC [Enterococcus gallinarum EG2] gi|257803325|gb|EEV32147.1| excinuclease ABC [Enterococcus gallinarum EG2] Length = 318 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 94/234 (40%), Gaps = 21/234 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 + +P+ PG+Y M D G +LYVGKA L++R+ SY N HT++I ++ + + Sbjct: 13 KANALPQKPGIYLMKDSHGGILYVGKAKQLKQRVSSYFRKNTQHTNKILRLVHNVVDFET 72 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TE++ALLLE +I++ +P +N + + ++ YI + R + + + Sbjct: 73 IFVDTELDALLLECQLIQQHRPIYNRQMTNFLNYQYIRFDAGN------IVRTNEAAEDA 126 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 GPF + + I L T+ L S + + Sbjct: 127 -IGPFRRSKQLPEIIEILTETYQLPSVNPYKLLS-------------LSKQLPLMQTIPL 172 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234 E ++E K F + + + + ++ + +E A + L Sbjct: 173 EEKLNELKLFFRAESKTIFRYLDQRLHYFAEQLLFEQAGQLLYQKKLLQSFYRE 226 >gi|302561257|ref|ZP_07313599.1| excinuclease ABC, C subunit [Streptomyces griseoflavus Tu4000] gi|302478875|gb|EFL41968.1| excinuclease ABC, C subunit [Streptomyces griseoflavus Tu4000] Length = 139 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 37/87 (42%), Positives = 55/87 (63%), Gaps = 1/87 (1%) Query: 518 LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYS-PLDEINGIGPLRKRLLLQSFG 576 +VL LY +QR+RDEAHRFAIT R +R K S PLD++ G+G RK+ L++ FG Sbjct: 1 MVLPRTSEGLYLLQRVRDEAHRFAITYQRAKRAKRFRSGPLDDVPGLGETRKQALIKHFG 60 Query: 577 TVKMISRSSPETLASIEGISKKIACKI 603 +VK + ++ + + + GI +K A I Sbjct: 61 SVKKLRSATIDQICDVPGIGRKTAETI 87 >gi|260219588|emb|CBA26433.1| hypothetical protein Csp_E35210 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 377 Score = 156 bits (393), Expect = 1e-35, Method: Composition-based stats. Identities = 52/187 (27%), Positives = 78/187 (41%), Gaps = 5/187 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P+ PGVY LYVGK+ L+ R+ S+ ++ R ++ +I I + T Sbjct: 100 DIPDTPGVYLFYGEGSIPLYVGKSVTLRTRVMSHFQASTKVAREMRILQEIRRIEWRETA 159 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKI-PALYKHR---DSSTIQGS 120 E+ ALLLE+ +IK L+P N LLR +K + D P L R ++ G Sbjct: 160 GELGALLLESRLIKELQPIHNRLLRREKQLTSWKLHDDPAARPLLQLVRLDQVNAADMGQ 219 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 +G + S + +L T L A C QI RC G C G + Sbjct: 220 LYGAYRSKRQAMDALRTLCETHQLCPNALG-LESGKGACFASQIGRCKGVCAGREVPALH 278 Query: 181 MEFVHEA 187 + A Sbjct: 279 RVRLQMA 285 >gi|238060312|ref|ZP_04605021.1| hypothetical protein MCAG_01278 [Micromonospora sp. ATCC 39149] gi|237882123|gb|EEP70951.1| hypothetical protein MCAG_01278 [Micromonospora sp. ATCC 39149] Length = 604 Score = 156 bits (393), Expect = 1e-35, Method: Composition-based stats. Identities = 47/217 (21%), Positives = 86/217 (39%), Gaps = 3/217 (1%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ +P+ PG+Y R LYVG + ++ R++SY + R++ M++ + Sbjct: 246 ADGLPKVPGIYIFRAADDRPLYVGTSGDIATRVRSYFTAAEKRARMSEMLAAAERVEAIE 305 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +EA + E +I P +N + + ++ +TD P L R + Y Sbjct: 306 CAHSLEAEVRELRLIGAHAPPYNRRSKFPERMVWLKLTDG-PYPRLSVVRSLADGDEVYL 364 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 GPF S A E LR C R T C L ++ RC PC I+ +Y Sbjct: 365 GPFGSQRAAELAAAGFHDALPLRQCTHRLSLRTVTPACALAELGRCPAPCEHRITPGEYA 424 Query: 182 EFVHEAKKFLSGGNH-NLKEKIARNMNQATLKEDYES 217 + + + + + + + + + YE Sbjct: 425 DRAVAPFRAATATDPGAVVDALLARIGALAADQRYEE 461 >gi|257897035|ref|ZP_05676688.1| excinuclease ABC [Enterococcus faecium Com12] gi|257833600|gb|EEV60021.1| excinuclease ABC [Enterococcus faecium Com12] Length = 351 Score = 156 bits (393), Expect = 1e-35, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 93/236 (39%), Gaps = 21/236 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + +P PGVY M + G V+YVGKA L+ R+ SY + H+ ++ MI I + F Sbjct: 35 KIKNLPMLPGVYLMKNQEGMVIYVGKAKRLKNRVSSYFHQNKQHSKKVLRMIHHITDFDF 94 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE++ALLLE +I+ +P +N + ++ Y+ I++K + Sbjct: 95 VVVDTELDALLLECQLIQHYRPFYNRQMNYFSNYNYVHISNKG----FVLTDTPT---AR 147 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 +GPF + + ++ T+ + L + + Sbjct: 148 TYGPFRLYKKMPSILRIMEETYQMPW-------------LSEISLLALRVQLPYLQEMTF 194 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + E + G N L + + + ++E A + + + +++ Sbjct: 195 EQKKKEIQGLFQGRNKKLLTYLKKRQQHFIYQLNFEKAGMLQKDIELVTYFIRRIQ 250 >gi|227550562|ref|ZP_03980611.1| excision endonuclease subunit UvrC [Enterococcus faecium TX1330] gi|227180270|gb|EEI61242.1| excision endonuclease subunit UvrC [Enterococcus faecium TX1330] Length = 326 Score = 156 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 93/236 (39%), Gaps = 21/236 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + +P PGVY M + G V+YVGKA L+ R+ SY + H+ ++ MI I + F Sbjct: 10 KIKNLPMLPGVYLMKNQEGMVIYVGKAKRLKNRVSSYFHQNKQHSKKVLRMIHHITDFDF 69 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE++ALLLE +I+ +P +N + ++ Y+ I++K + Sbjct: 70 VVVDTELDALLLECQLIQHYRPFYNRQMNYFSNYNYVHISNKG----FVLTDTPT---AR 122 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 +GPF + + ++ T+ + L + + Sbjct: 123 TYGPFRLYKKMPSILRIMEETYQMPW-------------LSEISLLALRVQLPYLQEMTF 169 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + E + G N L + + + ++E A + + + +++ Sbjct: 170 EQKKKEIQGLFQGRNKKLLTYLKKRQQHFIYQLNFEKAGMLQKDIELVTYFIRRIQ 225 >gi|297571327|ref|YP_003697101.1| DNA polymerase III subunit epsilon [Arcanobacterium haemolyticum DSM 20595] gi|296931674|gb|ADH92482.1| DNA polymerase III, epsilon subunit [Arcanobacterium haemolyticum DSM 20595] Length = 597 Score = 155 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 57/227 (25%), Positives = 98/227 (43%), Gaps = 8/227 (3%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ +P PGVYQ + VLY+G + N+ KR++SY + RI M+ + Sbjct: 244 ADDLPAGPGVYQFIGPNDEVLYIGTSSNVYKRVRSYFTAAEKRKRIGEMVDLATRVDAIP 303 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSY 121 T T +EA +LE +I+ ++P +N + + ++ +TD+H P L ++ + G+ Sbjct: 304 THTVLEAQILEIRLIRDIQPPYNRRSKPRSRY-WVTLTDEH-HPRLSITNVATFGELGNI 361 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCAD--SVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 GPF + +R+C R C L + CS PC + Sbjct: 362 LGPFNRKRHALGAGELIAGYSGIRTCTQILPAVPARISGCHLAEFGACSAPCV---TGRV 418 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA 226 + + + + L G +L E M E +ESA R+RL Sbjct: 419 QEDSLTKVRTVLHGDLDDLYEATLEKMQHLASAERFESATDQRERLY 465 >gi|325001618|ref|ZP_08122730.1| hypothetical protein PseP1_22781 [Pseudonocardia sp. P1] Length = 403 Score = 155 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 6/171 (3%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++++P PGVY VLYVG + +L +R++SY + R+ M++Q + V Sbjct: 224 AKRVPSEPGVYLFRGAGDEVLYVGTSGDLHRRVRSYFTAGERRRRVRDMVAQAERVDTVV 283 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +EA + E +I +PR+N R+ ++ T P L Sbjct: 284 CAHALEASVRELRLIAAHRPRYNRRSRNPGRAWWVAPT-AETFPRLSVVASPREGA---L 339 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPC 171 GPF+S A +++ LR C + PC L ++ RC+ PC Sbjct: 340 GPFSSQRAATAVLDAALDAVPLRRCTIRIPARNPSGTPCALHELGRCAAPC 390 >gi|293378728|ref|ZP_06624886.1| GIY-YIG catalytic domain protein [Enterococcus faecium PC4.1] gi|292642656|gb|EFF60808.1| GIY-YIG catalytic domain protein [Enterococcus faecium PC4.1] Length = 321 Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 94/236 (39%), Gaps = 21/236 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + +P PGVY M + G V+YVGKA L+ R+ SY + H+ ++ MI I + F Sbjct: 5 KIKNLPMLPGVYLMKNQEGMVIYVGKAKRLKNRVSSYFHQNKQHSKKVLRMIHHITDFDF 64 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE++ALLLE +I+ +P +N + ++ Y+ I++K + Sbjct: 65 VVVDTELDALLLECQLIQHYRPFYNRQMNYFSNYNYVHISNKG----FVLTDTPT---AR 117 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 +GPF + + ++ T+ + L ++ + Sbjct: 118 TYGPFRLYKKMPSILRIMEETYQMPW-------------LSEISLLALRVQLPDLQEMTF 164 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + E + G N L + + + ++E A + + + +++ Sbjct: 165 EQKKKEIQGLFQGRNKKLLTYLKKRQQHFIYQLNFEKAGMLQKDIELVTYFIRRIQ 220 >gi|257875502|ref|ZP_05655155.1| excinuclease ABC [Enterococcus casseliflavus EC20] gi|257809668|gb|EEV38488.1| excinuclease ABC [Enterococcus casseliflavus EC20] Length = 321 Score = 155 bits (391), Expect = 3e-35, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 90/234 (38%), Gaps = 21/234 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 + +PE PGVY M D VLYVGKA +L++R+ SY N H +++ ++ + + Sbjct: 19 KANALPEKPGVYLMKDQHNEVLYVGKAKSLKQRVVSYFRKNQQHANKVLRLVYNVVDFET 78 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE++ALLLE +I+ P +N + ++ ++ +T+ + Sbjct: 79 IETDTELDALLLECRLIQAFHPIYNRQMNHSANYCFVDLTNH----TFTITQTPQIGS-- 132 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 +GPF + L TF L + + L Q+ + E E Sbjct: 133 -YGPFRQTKKLPALFQLLSETFQLPTVNELTLLT-----LRKQLPQMDAYPLEEKWRE-- 184 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234 F +G + + + + +E A + + ++ Sbjct: 185 ------IGCFFAGKKTDCFSLLKKRLAYLIDHLLFEQASVLQRQIHLAQSFYQE 232 >gi|257898976|ref|ZP_05678629.1| excinuclease ABC [Enterococcus faecium Com15] gi|257836888|gb|EEV61962.1| excinuclease ABC [Enterococcus faecium Com15] Length = 326 Score = 154 bits (390), Expect = 3e-35, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 94/236 (39%), Gaps = 21/236 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + +P PGVY M + G V+YVGKA L+ R+ SY + H+ ++ MI I + F Sbjct: 10 KIKNLPMLPGVYLMKNQEGMVIYVGKAKRLKNRVSSYFHQNKQHSKKVLRMIHHITDFDF 69 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE++ALLLE +I+ +P +N + ++ Y+ I++K + Sbjct: 70 VVVDTELDALLLECQLIQHYRPFYNRQMNYFSNYNYVHISNKG----FVLTDTPT---AR 122 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 +GPF + + ++ T+ + L ++ + Sbjct: 123 TYGPFRLYKKMPSILRIMEETYQMPW-------------LSEISLLALRVQLPDLQEMTF 169 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + E + G N L + + + ++E A + + + +++ Sbjct: 170 EQKKKEIQGLFQGRNKKLLTYLKKRQQHFIYQLNFEKAGMLQKDIELVTYFIRRIQ 225 >gi|296166059|ref|ZP_06848506.1| DNA polymerase III epsilon subunit [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898580|gb|EFG78139.1| DNA polymerase III epsilon subunit [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 648 Score = 154 bits (389), Expect = 4e-35, Method: Composition-based stats. Identities = 53/267 (19%), Positives = 91/267 (34%), Gaps = 9/267 (3%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 +E +P PGVY +G VLYVG A +L++R+ Y + R+ M++ + Sbjct: 243 AEGLPRRPGVYLFRGPSGEVLYVGTAVDLRRRVGQYFTGADPRGRMKEMVNLATAVDHVE 302 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +EA + E ++ P +N R + ++ +T P L R + Sbjct: 303 CAHALEAGVRELRLLAAHAPPYNRRSRFPHRWWWVALT-DEAFPRLAVVRAPRHDRAV-- 359 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSEKY 180 GPF S T L R LR+C + R C ++ C I++ +Y Sbjct: 360 GPFRSRADAADTAALLARFTGLRTCTARLGRTVLHGPACAEAEVSPCPAA--RNITATQY 417 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH--IQNHNDSI 238 V + G ++ + + +E+A RDR A + Sbjct: 418 AAAVARVAALIDGMDNAALSAAVDQVTALAERRRFENAARLRDRTATAVEILWRGQRLRT 477 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQ 265 + GQ Sbjct: 478 LATLPELIAAAPDGEGGYHLAVVRHGQ 504 >gi|315281518|ref|ZP_07870130.1| UvrABC system protein C [Listeria marthii FSL S4-120] gi|313614847|gb|EFR88379.1| UvrABC system protein C [Listeria marthii FSL S4-120] Length = 108 Score = 154 bits (389), Expect = 4e-35, Method: Composition-based stats. Identities = 39/97 (40%), Positives = 61/97 (62%), Gaps = 1/97 (1%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +PE PG Y D +LY+GK+ L+ R+KSY HS + ++ QI ++ +T + Sbjct: 12 LPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDK 102 E EALLLE +I++ +P FNI L++ S+PYI IT++ Sbjct: 71 EKEALLLEMILIQKYQPPFNIQLKEGPSYPYIKITNE 107 >gi|293570995|ref|ZP_06682038.1| endo/excinuclease amino domain protein [Enterococcus faecium E980] gi|291608921|gb|EFF38200.1| endo/excinuclease amino domain protein [Enterococcus faecium E980] Length = 321 Score = 154 bits (389), Expect = 4e-35, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 94/236 (39%), Gaps = 21/236 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + +P PGVY M + G V+YVGKA L+ R+ SY + H+ ++ MI I + F Sbjct: 5 KIKNLPMLPGVYLMKNQEGMVIYVGKAKRLKNRVSSYFHQNKQHSKKVLRMIHHITDFDF 64 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE++ALLLE +I+ +P +N + ++ Y+ I++K + Sbjct: 65 VVVDTELDALLLECQLIQHYRPFYNRQMNYFSNYNYVHISNKG----FVLTDTPT---AR 117 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 +GPF + + ++ T+ + L ++ + Sbjct: 118 TYGPFRLYKKMPSILRIMEETYQMPW-------------LSEISLLALRVQLPDLQEMTF 164 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + E + G N L + + + ++E A + + + +++ Sbjct: 165 EQKKKEIQGLFQGRNKKLLTYLKKRQQHFIYQLNFEKAGMLQKDIELVTYFIRRIQ 220 >gi|257865875|ref|ZP_05645528.1| excinuclease ABC [Enterococcus casseliflavus EC30] gi|257872209|ref|ZP_05651862.1| excinuclease ABC [Enterococcus casseliflavus EC10] gi|257799809|gb|EEV28861.1| excinuclease ABC [Enterococcus casseliflavus EC30] gi|257806373|gb|EEV35195.1| excinuclease ABC [Enterococcus casseliflavus EC10] Length = 321 Score = 154 bits (388), Expect = 5e-35, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 89/234 (38%), Gaps = 21/234 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 + +PE PGVY M D VLYVGKA +L++R+ SY N H +++ ++ + + Sbjct: 19 KANALPEKPGVYLMKDQHNEVLYVGKAKSLKQRVVSYFRKNQQHANKVLRLVYNVVDFET 78 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE++ALLLE +I+ P +N + ++ ++ +T+ + Sbjct: 79 IETDTELDALLLECRLIQAFHPIYNRQMNHSANYCFVDLTNH----TFTITQTPQIGS-- 132 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 +GPF + L TF L + + L Q+ + + E Sbjct: 133 -YGPFRQTKKLPALFQLLSETFQLPTVNELTLLT-----LRKQLPQMDAYPLEQKWRE-- 184 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234 F +G + + + + +E A + + + Sbjct: 185 ------IGCFFAGKKTDCFSLLKKRLAYLIDHLLFEQASVLQREIHLAQSFYQE 232 >gi|31793370|ref|NP_855863.1| hypothetical protein Mb2214 [Mycobacterium bovis AF2122/97] gi|121638072|ref|YP_978296.1| hypothetical protein BCG_2207 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224990566|ref|YP_002645253.1| hypothetical protein JTY_2201 [Mycobacterium bovis BCG str. Tokyo 172] gi|31618962|emb|CAD97067.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97] gi|121493720|emb|CAL72195.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224773679|dbj|BAH26485.1| hypothetical protein JTY_2201 [Mycobacterium bovis BCG str. Tokyo 172] Length = 645 Score = 154 bits (388), Expect = 6e-35, Method: Composition-based stats. Identities = 57/228 (25%), Positives = 95/228 (41%), Gaps = 15/228 (6%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 +E +P PGVY +G VLYVG A +L++R+ Y + + R+T M+ ++I Sbjct: 243 AETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDHVE 302 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPY----ILITDKHKIPALYKHRDSSTIQ 118 +EA + E M+ P +N + FPY + +T P L R + Sbjct: 303 CAHPLEAGVRELRMLSTHAPPYNRRSK----FPYRWWWVALT-DEAFPRLSVIRAPRHDR 357 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTR--PCLLFQIKRCSGPCTGEIS 176 GPF S +T L R LR+C + R C ++ C +++ Sbjct: 358 VV--GPFRSRSKAAETTALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAA--RDVT 413 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR 224 + +Y E V A + G ++ + + + + YESA RD Sbjct: 414 AAQYAEAVLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDH 461 >gi|257893613|ref|ZP_05673266.1| excinuclease ABC [Enterococcus faecium 1,231,408] gi|257829992|gb|EEV56599.1| excinuclease ABC [Enterococcus faecium 1,231,408] Length = 182 Score = 154 bits (388), Expect = 6e-35, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 8/149 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + +P PGVY M D G+V+YVGKA L+ R+ SY + H+ ++ MI I + F Sbjct: 5 KMKTLPMLPGVYLMKDRDGKVIYVGKAKRLKNRVSSYFHQNKQHSKKVLRMIHHITDFDF 64 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE++ALLLE +I+ +P +N + ++ Y+ IT+K + Sbjct: 65 VVVDTELDALLLECQLIQHYRPFYNRQMNYFSNYNYVHITNKG----FVLTDTPT---AR 117 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCAD 149 +GPF + + ++ T+ + ++ Sbjct: 118 TYGPFRLYKKMPSILRIMEETYQMPWLSE 146 >gi|218753913|ref|ZP_03532709.1| hypothetical protein MtubG1_10964 [Mycobacterium tuberculosis GM 1503] Length = 493 Score = 153 bits (387), Expect = 6e-35, Method: Composition-based stats. Identities = 57/228 (25%), Positives = 95/228 (41%), Gaps = 15/228 (6%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 +E +P PGVY +G VLYVG A +L++R+ Y + + R+T M+ ++I Sbjct: 235 AETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDHVE 294 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPY----ILITDKHKIPALYKHRDSSTIQ 118 +EA + E M+ P +N + FPY + +T P L R + Sbjct: 295 CAHPLEAGVRELRMLSTHAPPYNRRSK----FPYRWWWVALT-DEAFPRLSVIRAPRHDR 349 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTR--PCLLFQIKRCSGPCTGEIS 176 GPF S +T L R LR+C + R C ++ C +++ Sbjct: 350 VV--GPFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAA--RDVT 405 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR 224 + +Y E V A + G ++ + + + + YESA RD Sbjct: 406 AAQYAEAVLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDH 453 >gi|15841682|ref|NP_336719.1| hypothetical protein MT2247 [Mycobacterium tuberculosis CDC1551] gi|289754299|ref|ZP_06513677.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|308232063|ref|ZP_07414780.2| hypothetical protein TMAG_00380 [Mycobacterium tuberculosis SUMu001] gi|308369651|ref|ZP_07418557.2| hypothetical protein TMBG_00738 [Mycobacterium tuberculosis SUMu002] gi|308370940|ref|ZP_07423289.2| hypothetical protein TMCG_00287 [Mycobacterium tuberculosis SUMu003] gi|308372166|ref|ZP_07427656.2| hypothetical protein TMDG_00669 [Mycobacterium tuberculosis SUMu004] gi|308373349|ref|ZP_07431961.2| hypothetical protein TMEG_02559 [Mycobacterium tuberculosis SUMu005] gi|308374520|ref|ZP_07436352.2| hypothetical protein TMFG_01153 [Mycobacterium tuberculosis SUMu006] gi|308375805|ref|ZP_07668121.1| hypothetical protein TMGG_00749 [Mycobacterium tuberculosis SUMu007] gi|308376938|ref|ZP_07668388.1| hypothetical protein TMHG_01381 [Mycobacterium tuberculosis SUMu008] gi|308377937|ref|ZP_07480989.2| hypothetical protein TMIG_00859 [Mycobacterium tuberculosis SUMu009] gi|308379142|ref|ZP_07485216.2| hypothetical protein TMJG_00453 [Mycobacterium tuberculosis SUMu010] gi|308380293|ref|ZP_07489432.2| hypothetical protein TMKG_00453 [Mycobacterium tuberculosis SUMu011] gi|308404461|ref|ZP_07493965.2| hypothetical protein TMLG_02678 [Mycobacterium tuberculosis SUMu012] gi|13881937|gb|AAK46533.1| DNA polymerase III, epsilon subunit, putative [Mycobacterium tuberculosis CDC1551] gi|289694886|gb|EFD62315.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|308215084|gb|EFO74483.1| hypothetical protein TMAG_00380 [Mycobacterium tuberculosis SUMu001] gi|308326837|gb|EFP15688.1| hypothetical protein TMBG_00738 [Mycobacterium tuberculosis SUMu002] gi|308330190|gb|EFP19041.1| hypothetical protein TMCG_00287 [Mycobacterium tuberculosis SUMu003] gi|308334026|gb|EFP22877.1| hypothetical protein TMDG_00669 [Mycobacterium tuberculosis SUMu004] gi|308337834|gb|EFP26685.1| hypothetical protein TMEG_02559 [Mycobacterium tuberculosis SUMu005] gi|308341594|gb|EFP30445.1| hypothetical protein TMFG_01153 [Mycobacterium tuberculosis SUMu006] gi|308345002|gb|EFP33853.1| hypothetical protein TMGG_00749 [Mycobacterium tuberculosis SUMu007] gi|308349313|gb|EFP38164.1| hypothetical protein TMHG_01381 [Mycobacterium tuberculosis SUMu008] gi|308354021|gb|EFP42872.1| hypothetical protein TMIG_00859 [Mycobacterium tuberculosis SUMu009] gi|308357963|gb|EFP46814.1| hypothetical protein TMJG_00453 [Mycobacterium tuberculosis SUMu010] gi|308361897|gb|EFP50748.1| hypothetical protein TMKG_00453 [Mycobacterium tuberculosis SUMu011] gi|308365560|gb|EFP54411.1| hypothetical protein TMLG_02678 [Mycobacterium tuberculosis SUMu012] Length = 637 Score = 153 bits (387), Expect = 6e-35, Method: Composition-based stats. Identities = 57/228 (25%), Positives = 95/228 (41%), Gaps = 15/228 (6%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 +E +P PGVY +G VLYVG A +L++R+ Y + + R+T M+ ++I Sbjct: 235 AETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDHVE 294 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPY----ILITDKHKIPALYKHRDSSTIQ 118 +EA + E M+ P +N + FPY + +T P L R + Sbjct: 295 CAHPLEAGVRELRMLSTHAPPYNRRSK----FPYRWWWVALT-DEAFPRLSVIRAPRHDR 349 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTR--PCLLFQIKRCSGPCTGEIS 176 GPF S +T L R LR+C + R C ++ C +++ Sbjct: 350 VV--GPFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAA--RDVT 405 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR 224 + +Y E V A + G ++ + + + + YESA RD Sbjct: 406 AAQYAEAVLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDH 453 >gi|260205487|ref|ZP_05772978.1| hypothetical protein MtubK8_14429 [Mycobacterium tuberculosis K85] gi|289574877|ref|ZP_06455104.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|289539308|gb|EFD43886.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] Length = 645 Score = 153 bits (387), Expect = 6e-35, Method: Composition-based stats. Identities = 57/228 (25%), Positives = 95/228 (41%), Gaps = 15/228 (6%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 +E +P PGVY +G VLYVG A +L++R+ Y + + R+T M+ ++I Sbjct: 243 AETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDHVE 302 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPY----ILITDKHKIPALYKHRDSSTIQ 118 +EA + E M+ P +N + FPY + +T P L R + Sbjct: 303 CAHPLEAGVRELRMLSTHAPPYNRRSK----FPYRWWWVALT-DEAFPRLSVIRAPRHDR 357 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTR--PCLLFQIKRCSGPCTGEIS 176 GPF S +T L R LR+C + R C ++ C +++ Sbjct: 358 VV--GPFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAA--RDVT 413 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR 224 + +Y E V A + G ++ + + + + YESA RD Sbjct: 414 AAQYAEAVLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDH 461 >gi|254232344|ref|ZP_04925671.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|289750785|ref|ZP_06510163.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|124601403|gb|EAY60413.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|289691372|gb|EFD58801.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|323719091|gb|EGB28236.1| hypothetical protein TMMG_01471 [Mycobacterium tuberculosis CDC1551A] Length = 647 Score = 153 bits (387), Expect = 6e-35, Method: Composition-based stats. Identities = 57/228 (25%), Positives = 95/228 (41%), Gaps = 15/228 (6%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 +E +P PGVY +G VLYVG A +L++R+ Y + + R+T M+ ++I Sbjct: 245 AETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDHVE 304 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPY----ILITDKHKIPALYKHRDSSTIQ 118 +EA + E M+ P +N + FPY + +T P L R + Sbjct: 305 CAHPLEAGVRELRMLSTHAPPYNRRSK----FPYRWWWVALT-DEAFPRLSVIRAPRHDR 359 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTR--PCLLFQIKRCSGPCTGEIS 176 GPF S +T L R LR+C + R C ++ C +++ Sbjct: 360 VV--GPFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAA--RDVT 415 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR 224 + +Y E V A + G ++ + + + + YESA RD Sbjct: 416 AAQYAEAVLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDH 463 >gi|15609328|ref|NP_216707.1| hypothetical protein Rv2191 [Mycobacterium tuberculosis H37Rv] gi|148662008|ref|YP_001283531.1| hypothetical protein MRA_2207 [Mycobacterium tuberculosis H37Ra] gi|148823398|ref|YP_001288152.1| hypothetical protein TBFG_12219 [Mycobacterium tuberculosis F11] gi|167969416|ref|ZP_02551693.1| hypothetical protein MtubH3_15860 [Mycobacterium tuberculosis H37Ra] gi|215403581|ref|ZP_03415762.1| hypothetical protein Mtub0_07840 [Mycobacterium tuberculosis 02_1987] gi|215411916|ref|ZP_03420690.1| hypothetical protein Mtub9_11341 [Mycobacterium tuberculosis 94_M4241A] gi|215427566|ref|ZP_03425485.1| hypothetical protein MtubT9_14751 [Mycobacterium tuberculosis T92] gi|215431125|ref|ZP_03429044.1| hypothetical protein MtubE_10707 [Mycobacterium tuberculosis EAS054] gi|215446420|ref|ZP_03433172.1| hypothetical protein MtubT_10948 [Mycobacterium tuberculosis T85] gi|219558170|ref|ZP_03537246.1| hypothetical protein MtubT1_13062 [Mycobacterium tuberculosis T17] gi|253798744|ref|YP_003031745.1| hypothetical protein TBMG_04035 [Mycobacterium tuberculosis KZN 1435] gi|254551229|ref|ZP_05141676.1| hypothetical protein Mtube_12318 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187187|ref|ZP_05764661.1| hypothetical protein MtubCP_14313 [Mycobacterium tuberculosis CPHL_A] gi|260201308|ref|ZP_05768799.1| hypothetical protein MtubT4_14636 [Mycobacterium tuberculosis T46] gi|289443698|ref|ZP_06433442.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289447819|ref|ZP_06437563.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289554022|ref|ZP_06443232.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289570307|ref|ZP_06450534.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289745464|ref|ZP_06504842.1| DNA polymerase III, epsilon subunit [Mycobacterium tuberculosis 02_1987] gi|294993576|ref|ZP_06799267.1| hypothetical protein Mtub2_03474 [Mycobacterium tuberculosis 210] gi|297634780|ref|ZP_06952560.1| hypothetical protein MtubK4_11686 [Mycobacterium tuberculosis KZN 4207] gi|297731771|ref|ZP_06960889.1| hypothetical protein MtubKR_11808 [Mycobacterium tuberculosis KZN R506] gi|298525683|ref|ZP_07013092.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|313659105|ref|ZP_07815985.1| hypothetical protein MtubKV_11818 [Mycobacterium tuberculosis KZN V2475] gi|1722908|sp|Q10384|Y2191_MYCTU RecName: Full=Uncharacterized protein Rv2191/MT2247 gi|1237044|emb|CAA94260.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv] gi|148506160|gb|ABQ73969.1| hypothetical protein MRA_2207 [Mycobacterium tuberculosis H37Ra] gi|148721925|gb|ABR06550.1| conserved hypothetical protein [Mycobacterium tuberculosis F11] gi|253320247|gb|ACT24850.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 1435] gi|289416617|gb|EFD13857.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289420777|gb|EFD17978.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289438654|gb|EFD21147.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289544061|gb|EFD47709.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289685992|gb|EFD53480.1| DNA polymerase III, epsilon subunit [Mycobacterium tuberculosis 02_1987] gi|298495477|gb|EFI30771.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|326903805|gb|EGE50738.1| DNA polymerase III [Mycobacterium tuberculosis W-148] gi|328458507|gb|AEB03930.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 4207] Length = 645 Score = 153 bits (387), Expect = 6e-35, Method: Composition-based stats. Identities = 57/228 (25%), Positives = 95/228 (41%), Gaps = 15/228 (6%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 +E +P PGVY +G VLYVG A +L++R+ Y + + R+T M+ ++I Sbjct: 243 AETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDHVE 302 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPY----ILITDKHKIPALYKHRDSSTIQ 118 +EA + E M+ P +N + FPY + +T P L R + Sbjct: 303 CAHPLEAGVRELRMLSTHAPPYNRRSK----FPYRWWWVALT-DEAFPRLSVIRAPRHDR 357 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTR--PCLLFQIKRCSGPCTGEIS 176 GPF S +T L R LR+C + R C ++ C +++ Sbjct: 358 VV--GPFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAA--RDVT 413 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR 224 + +Y E V A + G ++ + + + + YESA RD Sbjct: 414 AAQYAEAVLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDH 461 >gi|289565195|ref|ZP_06445647.1| excinuclease ABC [Enterococcus faecium D344SRF] gi|289163016|gb|EFD10864.1| excinuclease ABC [Enterococcus faecium D344SRF] Length = 182 Score = 153 bits (386), Expect = 9e-35, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 8/149 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + +P PGVY M D G+V+YVGKA L+ R+ SY + H+ ++ MI I + F Sbjct: 5 KMKTLPMLPGVYLMKDRDGKVIYVGKAKRLKNRVSSYFHQNKQHSKKVLRMIHHITDFDF 64 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE++ALLLE +I+ +P +N + ++ Y+ IT+K + Sbjct: 65 VVVDTELDALLLECQLIQHYRPFYNRQMNYFSNYNYVHITNKG----FVLTDTPT---AR 117 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCAD 149 +GPF + + ++ T+ + ++ Sbjct: 118 TYGPFRLYKKMPSILRIMEETYQMPWLSE 146 >gi|257885272|ref|ZP_05664925.1| excinuclease ABC subunit C [Enterococcus faecium 1,231,501] gi|257821124|gb|EEV48258.1| excinuclease ABC subunit C [Enterococcus faecium 1,231,501] Length = 182 Score = 152 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 8/149 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + +P PGVY M D G+V+YVGKA L+ R+ SY + H+ ++ MI I + F Sbjct: 5 KMKTLPMLPGVYLMKDRDGKVIYVGKAKRLKNRVSSYFHQNKQHSKKVLRMIYHITDFDF 64 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE++ALLLE +I+ +P +N + ++ Y+ IT+K + Sbjct: 65 VVVDTELDALLLECQLIQHYRPFYNRQMNYFSNYNYVHITNKG----FVLTDTPT---AR 117 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCAD 149 +GPF + + ++ T+ + ++ Sbjct: 118 TYGPFRLYKKMPSILRIMEETYQMPWLSE 146 >gi|315029517|gb|EFT41449.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX4000] Length = 320 Score = 152 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 54/236 (22%), Positives = 99/236 (41%), Gaps = 21/236 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + Q+P P VY M D ++YVGKA L+ R+ SY +SN H+ + ++ QI + Sbjct: 8 KAHQLPLTPSVYLMKDATDTIIYVGKAKKLKNRVSSYFINSNQHSRKTMRLVKQIIDFDV 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE++ALLLE +I++ +PR+N + + + Y+ + + L + + + Sbjct: 68 LHTDTELDALLLECQLIQQYRPRYNRQMNAYEQYSYVSVAVNER--QLEIKLLNIPTKEN 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 FGP++ + + L + L ++ S T E + Sbjct: 126 CFGPYSIRRKLNRLKIILDSIYDLVPTNYWH----------QTFQKESAIPTELFQQELF 175 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 F ++IA+ M +A K+ +E A ++ L+ N N Sbjct: 176 --------DFFHNQGREPIKRIAQQMQEAAEKQAFEKAAKLKEDWLFLTRFANQNQ 223 >gi|260906794|ref|ZP_05915116.1| hypothetical protein BlinB_15797 [Brevibacterium linens BL2] Length = 581 Score = 152 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 58/287 (20%), Positives = 122/287 (42%), Gaps = 9/287 (3%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ +P PGVY LD RVLY+GK+ N+ +R++ Y +++ + R+ MI+ + Sbjct: 226 AKGVPAEPGVYMFLDGTRRVLYIGKSGNMARRVRGYFNASENRGRMAEMITAAQEVSCLP 285 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS---TIQG 119 +EA + E +I L P +N ++ + +I+++ + P L R ++ Sbjct: 286 CAHALEAEVREIRLIGELAPPYNRRSKNPERNSWIVLS-DEEYPRLSVVRANTALEKSPA 344 Query: 120 SYFGPFAS---VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176 + GPF S AV++ +++L + + RPC+ Q+ +C GPC G + Sbjct: 345 TPLGPFRSRKTAQAVKELLDTLYPVKRCTAKITASNLASHRPCVSSQVGQCGGPCAGVLD 404 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + Y++ + + ++G +L+ + M++ + YE+A RD + + + Sbjct: 405 RQAYLDDIAALFEVMAGDFTSLRSLCTQRMSRLADEARYETAAEVRDAMRSALSCAARAE 464 Query: 237 S--IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST 281 S + + I G+ + + Sbjct: 465 SVQALRAVPEILAHAPGPEGGIDLAVIRHGKLAAASHVRGSQAIDES 511 >gi|325676936|ref|ZP_08156608.1| DNA polymerase III epsilon subunit [Rhodococcus equi ATCC 33707] gi|325552236|gb|EGD21926.1| DNA polymerase III epsilon subunit [Rhodococcus equi ATCC 33707] Length = 577 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 86/229 (37%), Gaps = 17/229 (7%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PGVY + VLYVG A +L++R+++Y + R+ M++ + Sbjct: 223 ASHLPRSPGVYLFRGPSDEVLYVGTASDLRRRVRNYFTGSETRGRMKEMVALATRVDHVE 282 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFP----YILITDKHKIPALYKHRDSSTIQ 118 +EA + E ++ P +N + FP ++ +T P L R + Sbjct: 283 CAHPLEAGVRELRLLSAHVPPYNRRSK----FPMRGWWVTLT-DEAFPRLSVVRTPTADA 337 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTR--PCLLFQIKRCSGPCTGEIS 176 GPF S ++ LR+C + + + C I C Sbjct: 338 ---LGPFRSRTDATDAAATVAEFCGLRTCTTRIGKGQRHGPKCPPRDIGGCPAIA---DD 391 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRL 225 E Y A+ + G + + + + E +ESA RDR+ Sbjct: 392 EEGYRVAPETARALIRGEDDAPLRRARARIEELAAAELFESAARLRDRV 440 >gi|315149843|gb|EFT93859.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0012] Length = 320 Score = 152 bits (383), Expect = 2e-34, Method: Composition-based stats. Identities = 54/236 (22%), Positives = 98/236 (41%), Gaps = 21/236 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 S Q+ PGVY M D ++YVGKA L+ R+ SY +S+ H+ + ++ QI + Sbjct: 8 KSHQLSLTPGVYLMKDATDTIIYVGKAKKLKNRVSSYFINSHQHSRKTMRLVKQIIDFDV 67 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE++ALLLE +I++ +PR+N + + + Y+ + + L + + + Sbjct: 68 LHTDTELDALLLECQLIQQYRPRYNRQMNAYEQYSYVSVAVNER--QLEIKLLNIPTKEN 125 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 FGP++ + L + L ++ S T E + Sbjct: 126 CFGPYSIRRKLNHLKIILDSIYDLVPTNYWH----------QTFQKESAIPTELFQQELF 175 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 F ++IA+ M +A K+ +E A ++ L+ N N Sbjct: 176 --------DFFHNQGREPIKRIAQQMQEAAEKQAFEKAAKLKEDWLFLTRFANQNQ 223 >gi|289569437|ref|ZP_06449664.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis T17] gi|289543191|gb|EFD46839.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis T17] Length = 116 Score = 151 bits (382), Expect = 3e-34, Method: Composition-based stats. Identities = 38/88 (43%), Positives = 51/88 (57%), Gaps = 1/88 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 +P PGVY+ D GRV+YVGKA +L+ R+ SY + R +++ + +TV Sbjct: 13 SIPVEPGVYRFRDQHGRVIYVGKAKSLRSRLTSYFADVASLAPRTRQLVTTAAKVEWTVV 72 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDD 91 TEVEAL LE IK PRFN+ RDD Sbjct: 73 GTEVEALQLEYTWIKEFDPRFNVRYRDD 100 >gi|118466522|ref|YP_881505.1| hypothetical protein MAV_2300 [Mycobacterium avium 104] gi|118167809|gb|ABK68706.1| DNA polymerase III, epsilon subunit [Mycobacterium avium 104] Length = 643 Score = 151 bits (382), Expect = 3e-34, Method: Composition-based stats. Identities = 51/265 (19%), Positives = 97/265 (36%), Gaps = 5/265 (1%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 +E +P PGVY +G VLY+G A +L++R+ Y + R+ M++ + Sbjct: 243 AEGLPRRPGVYLFRGPSGEVLYIGTAVDLRRRVAQYFTGADPRGRMKEMVALAGAVDHVE 302 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +EA + E ++ P +N R + + ++ +T P L R + Sbjct: 303 CAHALEAGVRELRLLAAHAPPYNRRSRFPQRWWWVALT-DEAFPRLAVVRAPRHDRAV-- 359 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF + T L R LR+C + + R L + + P +++ +Y Sbjct: 360 GPFRARADAADTAELLARFAGLRTCTNRLGRAALHGPLCPEAEVAPCPAARGVTATQYAA 419 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH--IQNHNDSIYN 240 V + G +++ + + +ESA RDR A + + Sbjct: 420 AVARVAALIDGADNSALAAAVDQVAALAERRHFESAARLRDRTATAVEVLWRGQRLRVLA 479 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQ 265 + Q +G+ Sbjct: 480 SLPELVAAAPDGQGGYQLAVVRYGR 504 >gi|254774974|ref|ZP_05216490.1| hypothetical protein MaviaA2_09919 [Mycobacterium avium subsp. avium ATCC 25291] Length = 648 Score = 151 bits (382), Expect = 3e-34, Method: Composition-based stats. Identities = 51/265 (19%), Positives = 97/265 (36%), Gaps = 5/265 (1%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 +E +P PGVY +G VLY+G A +L++R+ Y + R+ M++ + Sbjct: 248 AEGLPRRPGVYLFRGPSGEVLYIGTAVDLRRRVAQYFTGADPRGRMKEMVALAGAVDHVE 307 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +EA + E ++ P +N R + + ++ +T P L R + Sbjct: 308 CAHALEAGVRELRLLAAHAPPYNRRSRFPQRWWWVALT-DEAFPRLAVVRAPRHDRAV-- 364 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF + T L R LR+C + + R L + + P +++ +Y Sbjct: 365 GPFRARADAADTAELLARFAGLRTCTNRLGRAALHGPLCPEAEVAPCPAARGVTATQYAA 424 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH--IQNHNDSIYN 240 V + G +++ + + +ESA RDR A + + Sbjct: 425 AVARVAALIDGADNSALAAAVDQVAALAERRHFESAARLRDRTATAVEVLWRGQRLRVLA 484 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQ 265 + Q +G+ Sbjct: 485 SLPELVAAAPDGQGGYQLAVVRYGR 509 >gi|312140182|ref|YP_004007518.1| DNA polymerase III epsilon subunit [Rhodococcus equi 103S] gi|311889521|emb|CBH48838.1| DNA polymerase III epsilon subunit [Rhodococcus equi 103S] Length = 577 Score = 151 bits (381), Expect = 3e-34, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 86/229 (37%), Gaps = 17/229 (7%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PGVY + VLYVG A +L++R+++Y + R+ M++ + Sbjct: 223 ASHLPRSPGVYLFRGPSDEVLYVGTASDLRRRVRNYFTGSETRGRMKEMVALATRVDHVE 282 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFP----YILITDKHKIPALYKHRDSSTIQ 118 +EA + E ++ P +N + FP ++ +T P L R + Sbjct: 283 CAHPLEAGVRELRLLSAHVPPYNRRSK----FPMRGWWVTLT-DEVFPRLSVVRTPTADA 337 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTR--PCLLFQIKRCSGPCTGEIS 176 GPF S ++ LR+C + + + C I C Sbjct: 338 ---LGPFRSRTDATDAAAAVAEFCGLRTCTTRIGKGQRHGPKCPPRDIGGCPAIA---DD 391 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRL 225 E Y A+ + G + + + + E +ESA RDR+ Sbjct: 392 EEGYRVAPETARALIRGEDDAPLRRARARIEELAAAELFESAARLRDRV 440 >gi|120435022|ref|YP_860708.1| exonuclease family protein [Gramella forsetii KT0803] gi|117577172|emb|CAL65641.1| exonuclease family protein [Gramella forsetii KT0803] Length = 457 Score = 151 bits (381), Expect = 3e-34, Method: Composition-based stats. Identities = 57/266 (21%), Positives = 100/266 (37%), Gaps = 11/266 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 E++P GVY D ++YVGK+ N++KR+ + N + M ++ ++ + + Sbjct: 190 LEELPSETGVYYFHDENSEIIYVGKSRNIRKRVNQHFT--NDNPKSREMQKKVASVSYEL 247 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDK-SFPYILITDKHKIPALYKHRDSSTIQGSY 121 T E+ ALL E IK LKPR+N L+ D S TD L R + T + Sbjct: 248 TGNELIALLKENQEIKELKPRYNRALKRDIFSHALYQFTDDDGYINLKIGRANKTKKN-- 305 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 F+S+ + + ++ F L T C + IK C G C GE Y Sbjct: 306 ITTFSSLRSAKNSLEKWVTEFELCERLAG-LHGGTGNCFAYTIKSCHGACIGEEPPISYN 364 Query: 182 EFVHEAKKFLSGGNHNL-----KEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 E V++ S N N+ ++ D++ + + Sbjct: 365 ERVNKLIDRHSYNNQNMLLIGRGREVDEKSALLIEDGDFKGTGYFNLNHQINNLDIIRSI 424 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFH 262 + + + ++ + F Sbjct: 425 ITPMDNNRDAQHIIQSFLRKKHHFKI 450 >gi|41408028|ref|NP_960864.1| hypothetical protein MAP1930 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396383|gb|AAS04247.1| hypothetical protein MAP_1930 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 643 Score = 151 bits (381), Expect = 3e-34, Method: Composition-based stats. Identities = 51/265 (19%), Positives = 96/265 (36%), Gaps = 5/265 (1%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 +E +P PGVY +G VLY+G A +L++R+ Y + R+ M++ + Sbjct: 243 AEGLPRRPGVYLFRGPSGEVLYIGTAVDLRRRVAQYFTGADPRGRMKEMVALAGAVDHVE 302 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +EA + E ++ P +N R + + ++ +T P L R + Sbjct: 303 CAHALEAGVRELRLLAAHAPPYNRRSRFPQRWWWVALT-DEAYPRLAVVRAPRHDRAV-- 359 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 GPF + T L R LR+C + + R L + + P +++ +Y Sbjct: 360 GPFRARADAADTAELLARFAGLRTCTNRLGRAALHGPLCPEAEVAPCPAARGVTATQYAA 419 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH--IQNHNDSIYN 240 V + G +++ + + +ESA RDR A + Sbjct: 420 AVARVAALIDGADNSALAAAVDQVAALAERRHFESAARLRDRTATAVETLWRGQRLRALA 479 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQ 265 + Q +G+ Sbjct: 480 SLPELVAAAPDGQGGYQLAVVRYGR 504 >gi|257888587|ref|ZP_05668240.1| excinuclease ABC [Enterococcus faecium 1,141,733] gi|257824641|gb|EEV51573.1| excinuclease ABC [Enterococcus faecium 1,141,733] Length = 351 Score = 151 bits (381), Expect = 3e-34, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 93/236 (39%), Gaps = 21/236 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60 + +P PGVY M + G V+YVGKA L+ RI SY + H+ ++ MI I + F Sbjct: 35 KIKNLPMLPGVYLMKNQEGMVIYVGKAKRLKNRISSYFHQNKQHSKKVLRMIHHITDFDF 94 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE++ALLLE +I+ P +N + ++ Y+ I++K + Sbjct: 95 VVVDTELDALLLECQLIQHYHPFYNRQMNYFSNYNYVHISNKG----FVLTDTPT---AR 147 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 +GPF + + ++ T+ + L ++ + Sbjct: 148 TYGPFRLYKKMPSILRIMEETYQMPW-------------LSEISLLALRVQLPDLQEMTF 194 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 + E + G N L + + + ++E A + + + +++ Sbjct: 195 EQKKKEIQGLFQGRNKKLLTYLKKRQQHFIYQLNFEKAGMLQKDIELVTYFIRRIQ 250 >gi|160879816|ref|YP_001558784.1| excinuclease ABC subunit C [Clostridium phytofermentans ISDg] gi|160428482|gb|ABX42045.1| Excinuclease ABC C subunit domain protein [Clostridium phytofermentans ISDg] Length = 323 Score = 151 bits (381), Expect = 4e-34, Method: Composition-based stats. Identities = 47/150 (31%), Positives = 85/150 (56%), Gaps = 3/150 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 +Q+P+ PG+Y+MLD G ++Y+GK+ LQKR++SY ++T M+ + +I + Sbjct: 10 KLKQIPKLPGIYKMLDSRGVIIYIGKSKCLQKRVQSYFVKTPKWDKVTRMVPMVKDIEYV 69 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 VT T +EA LLE ++IK KPRFN +++D ++ +I + D +K +L + + Sbjct: 70 VTDTHLEARLLECSLIKEYKPRFNAQMKNDLNYFFIKVEDYNKYNSLSVMEERTD---HC 126 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSV 151 +GPF S + + + L+ + + D Sbjct: 127 YGPFRSKFTISEFLVKLKNIYPITRNGDQY 156 >gi|325569884|ref|ZP_08145878.1| excision endonuclease subunit UvrC [Enterococcus casseliflavus ATCC 12755] gi|325157007|gb|EGC69175.1| excision endonuclease subunit UvrC [Enterococcus casseliflavus ATCC 12755] Length = 310 Score = 151 bits (381), Expect = 4e-34, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 89/234 (38%), Gaps = 21/234 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60 + +PE PGVY M D VLYVGKA +L++R+ SY N H +++ ++ + + Sbjct: 11 KANALPERPGVYLMKDQHNEVLYVGKAKSLKQRVVSYFRKNQQHANKVLRLVYNVVDFET 70 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 T TE++ALLLE +I+ P +N + ++ ++ +T+ + + Sbjct: 71 IETDTELDALLLECRLIQAFHPIYNRQMNHSANYCFVDLTNH----SFTITQTPQIGS-- 124 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 +GPF + L TF L + + ++ + Sbjct: 125 -YGPFRQTKKLPVLFQLLSETFQLPTVNELTLLT-------------LRKQLPQMEAYSL 170 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234 E E F +G + + + + +E A + + + Sbjct: 171 EEKWREIGCFFAGKKTDCFSLLKKRLAYLIDHLLFEQASVLQREIHLAESFYQE 224 >gi|296135545|ref|YP_003642787.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12] gi|295795667|gb|ADG30457.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12] Length = 469 Score = 151 bits (381), Expect = 4e-34, Method: Composition-based stats. Identities = 46/182 (25%), Positives = 79/182 (43%), Gaps = 5/182 (2%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +PE PGVY LY+GK+ L+ R+ S+ +++ R + ++ + + T Sbjct: 195 DDIPEAPGVYLFYGEGEVPLYIGKSVRLRSRVLSHFQADHRDARELRLAQEVRRVEWRET 254 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKH-KIPALYKHRDSSTIQG--- 119 E ALLLE +IK L+P N LR ++ + + P L R Sbjct: 255 AGEFGALLLEMRLIKELQPLLNRQLRRERQLCAWRLAEDPVARPLLTLMRGDELDPRFFP 314 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 +G + S + + +L + L A + + R C QI +C G C G S+E+ Sbjct: 315 QLYGCYRSKRQAVEALRALVQRHALCPQAVGLESGKGR-CFAQQIGQCKGVCCGLESAER 373 Query: 180 YM 181 + Sbjct: 374 HH 375 >gi|240168250|ref|ZP_04746909.1| hypothetical protein MkanA1_02987 [Mycobacterium kansasii ATCC 12478] Length = 680 Score = 151 bits (380), Expect = 5e-34, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 7/225 (3%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ +P PG+Y +G VLYVG A +L++R+ Y + + RI M++ + Sbjct: 257 ADGLPHRPGIYVFRGPSGEVLYVGTAVDLRRRVSQYFNGADPRGRIKEMVNLATGVDHVE 316 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +EA + E M+ P +N R + +++++ + P L R G Sbjct: 317 CAHPLEAGVRELRMLAAHAPPYNRRSRFPHRWWWVVLS-EEAFPRLAVVRAPRH--GRVI 373 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTR--PCLLFQIKRCSGPCTGEISSEKY 180 GP+ S +T L R +R+C + R C ++ C +++++Y Sbjct: 374 GPYRSRADAAETATLLARFTGIRTCTKRLARSAVHGPACPELEVSPCPAA--RNLTAQRY 431 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRL 225 E V A + G ++ + + YESA RD + Sbjct: 432 AEAVQRATDLIDGRDNTALAAAIHQVTVLAERHRYESAARLRDHI 476 >gi|183983226|ref|YP_001851517.1| hypothetical protein MMAR_3235 [Mycobacterium marinum M] gi|183176552|gb|ACC41662.1| conserved hypothetical protein [Mycobacterium marinum M] Length = 674 Score = 150 bits (379), Expect = 6e-34, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 91/225 (40%), Gaps = 7/225 (3%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ +P PG+Y +G VLYVG A +L++R+ Y + + R+ M++ + Sbjct: 257 ADGLPHRPGIYLFRGPSGEVLYVGTAVDLRRRVSQYFNGADSRGRMKEMVALAGAVDHVE 316 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +EA + E M+ P +N R + ++ +T P L R + Sbjct: 317 CAHALEAGVRELRMLAAHAPPYNRRSRFPHRWWWVTLT-DEAFPRLSVVRAPRHDRVV-- 373 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSEKY 180 GPF S +T L R +R+C + R C ++ C T +++E Y Sbjct: 374 GPFRSRTDATETAALLARFTGVRTCTKRLARSALHGPACPELEVSACPA--TRNVTAEGY 431 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRL 225 + A + G ++ ++ + YESA RD + Sbjct: 432 ADAAKRAADLIEGVDNTALTAAVHQVSDLAERHRYESAARLRDHI 476 >gi|126435878|ref|YP_001071569.1| hypothetical protein Mjls_3300 [Mycobacterium sp. JLS] gi|126235678|gb|ABN99078.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. JLS] Length = 630 Score = 150 bits (378), Expect = 7e-34, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 83/224 (37%), Gaps = 7/224 (3%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ +P PGVY VLY+G A +L++R+ Y + R+ M S + Sbjct: 227 ADGLPHRPGVYLFRGPGDEVLYIGTAVDLRRRVGQYFTGADPRARMKEMASLATRVDHVE 286 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 E+EA + E ++ P +N + + + ++++T P R Sbjct: 287 CAHELEAGVRELRLLAAHAPPYNRRSKFPQRWWWVVLT-DEPFPRFSVVRAPRHGSAV-- 343 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSEKY 180 GPF + +T L R +R+C + R C ++ C P +I + Y Sbjct: 344 GPFRARTDAVQTAELLARFTGVRTCTARLARAARHGAACAERELSPCPAP--RDIDAAAY 401 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR 224 A + G + + + YESA RD Sbjct: 402 APAHRRAADLIEGRDDAALAAVVDGIAALAAVNRYESAARLRDH 445 >gi|108800255|ref|YP_640452.1| hypothetical protein Mmcs_3289 [Mycobacterium sp. MCS] gi|119869383|ref|YP_939335.1| hypothetical protein Mkms_3351 [Mycobacterium sp. KMS] gi|108770674|gb|ABG09396.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS] gi|119695472|gb|ABL92545.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS] Length = 630 Score = 150 bits (378), Expect = 7e-34, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 83/224 (37%), Gaps = 7/224 (3%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ +P PGVY VLY+G A +L++R+ Y + R+ M S + Sbjct: 227 ADGLPHRPGVYLFRGPGDEVLYIGTAVDLRRRVGQYFTGADPRARMKEMASLATRVDHVE 286 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 E+EA + E ++ P +N + + + ++++T P R Sbjct: 287 CAHELEAGVRELRLLAAHAPPYNRRSKFPQRWWWVVLT-DEPFPRFSVVRAPRHGSAV-- 343 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSEKY 180 GPF + +T L R +R+C + R C ++ C P +I + Y Sbjct: 344 GPFRARTDAVQTAELLARFTGVRTCTARLARAARHGAACAERELSPCPAP--RDIDAAAY 401 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR 224 A + G + + + YESA RD Sbjct: 402 APAHRRAADLIEGRDDAALAAVVDGIAALAAVNRYESAARLRDH 445 >gi|71907536|ref|YP_285123.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB] gi|71847157|gb|AAZ46653.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB] Length = 453 Score = 150 bits (378), Expect = 8e-34, Method: Composition-based stats. Identities = 49/195 (25%), Positives = 87/195 (44%), Gaps = 5/195 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 E +PE PGVY +Y+GKA ++++R+ S+ ++ + + + Q+ I + Sbjct: 193 LEDLPESPGVYLFYGDNDLPIYIGKAKDIRQRVLSHFSGDHSSAKEMALSQQLRRIDWIE 252 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLR-DDKSFPYILITDKHKI--PALYKHRDSSTI-Q 118 T E+ ALL E+ ++K L P N LR +D + L+ + P L D Sbjct: 253 TAGEIGALLKESRLVKTLMPTANRQLRKNDDVCTWTLVDEGEGWLRPQLALAADLDFDIH 312 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISS 177 + +G F S + +L + L + + + +PC +QIKRC G C G+ Sbjct: 313 TACYGLFKSTREANDVLRALVESHHLCDVLTGLDKAKPGKPCFGYQIKRCKGACIGKEPL 372 Query: 178 EKYMEFVHEAKKFLS 192 K+ + A + Sbjct: 373 AKHTMRLMTALTSMK 387 >gi|294339674|emb|CAZ88034.1| putative protein fusion of DNA polymerase III, epsilon subunit and Excinuclease ABC, C subunit [Thiomonas sp. 3As] Length = 469 Score = 149 bits (376), Expect = 1e-33, Method: Composition-based stats. Identities = 45/182 (24%), Positives = 77/182 (42%), Gaps = 5/182 (2%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +PE GVY LY+GK+ L+ R+ S+ +++ R + ++ + + T Sbjct: 195 DDIPEASGVYLFYGEGEVPLYIGKSVRLRARVLSHFQADHRDARELRLAQEVRRVEWRET 254 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKH-KIPALYKHRDSSTIQG--- 119 E ALLLE +IK L+P N LR ++ + P L R Sbjct: 255 AGEFGALLLEMRLIKELQPLLNRQLRRERQLCAWRLAKDPVARPLLTLVRGDELDPRFFP 314 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 +G + S + + +L + L A + + R C QI +C G C G S+E+ Sbjct: 315 QLYGCYRSKRQAVEALRALAQRHALCPQALGLESGKGR-CFAQQIGQCKGVCCGLESAER 373 Query: 180 YM 181 + Sbjct: 374 HH 375 >gi|82703123|ref|YP_412689.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC 25196] gi|82411188|gb|ABB75297.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC 25196] Length = 463 Score = 149 bits (376), Expect = 1e-33, Method: Composition-based stats. Identities = 43/183 (23%), Positives = 80/183 (43%), Gaps = 5/183 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 +Q+P+ PGVY G LY+GK+ L+ R+ S+ ++ + + ++ + + Sbjct: 195 LDQIPDRPGVYFFYGKNGLPLYIGKSVTLRSRVMSHFSGDHASFSDMRIAQEVERVEWME 254 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILI-TDKHKIPALYKHRD---SSTIQ 118 T E+ ALLLE+ +IK P N LR ++ + + D ++ P + + + Sbjct: 255 TAGELGALLLESRLIKEHHPIHNKRLRRSRTLFSLKLGDDSYEAPLVNIVTEEDIHPEVF 314 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 G +G F S + + R L + C Q+KRC+G C G+ + Sbjct: 315 GDLYGLFRSKTKAVDALREVVRENRLCPRVVG-LENGKGACFAHQLKRCNGVCAGKEVPQ 373 Query: 179 KYM 181 + Sbjct: 374 LHY 376 >gi|269794889|ref|YP_003314344.1| exonuclease, DNA polymerase III subunit epsilon family [Sanguibacter keddieii DSM 10542] gi|269097074|gb|ACZ21510.1| exonuclease, DNA polymerase III, epsilon subunit family [Sanguibacter keddieii DSM 10542] Length = 616 Score = 147 bits (372), Expect = 4e-33, Method: Composition-based stats. Identities = 56/236 (23%), Positives = 101/236 (42%), Gaps = 11/236 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ MP PGVY + VLYVG + +++ R++SY + R+T MI +R Sbjct: 256 ADGMPSGPGVYMFVGPQDEVLYVGTSTDVRTRVRSYFTAAEKRGRMTEMIRLAVTVRAVP 315 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHR-DSSTIQGSY 121 T +EA + E +I PR+N + + ++ ++ P L R ++ + Sbjct: 316 CATALEARVRELRLITEHAPRYNRRSKHPERMHWVRVS-SEAYPRLTVVRDGTAALGEPV 374 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT---RPCLLFQIKRCSGPCTGEI--- 175 GPF S + + +LQ +R C + + C+L ++ RCS PC Sbjct: 375 VGPFVSRARATEAVEALQSAHQVRQCTKKLPALPSATASACVLAEMGRCSAPCVRPSSRP 434 Query: 176 ---SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAAL 228 + Y + V + + + +AR + + ++ +E A RDRL A Sbjct: 435 TTAPDDDYADVVAGLVRSMEHDPSPVVAALARRIAEHVEQQRFEDAGTDRDRLEAF 490 >gi|145223545|ref|YP_001134223.1| hypothetical protein Mflv_2958 [Mycobacterium gilvum PYR-GCK] gi|145216031|gb|ABP45435.1| DNA polymerase III, epsilon subunit [Mycobacterium gilvum PYR-GCK] Length = 617 Score = 147 bits (371), Expect = 4e-33, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 84/222 (37%), Gaps = 7/222 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY + VLYVG A +L++R+ Y + + R+ M S + Sbjct: 221 SLPRSPGVYLFRGPSAEVLYVGTAVDLRRRVGQYFNGADPRTRMKEMASLATAVDHVECA 280 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 ++EA + E ++ P +N + + ++ +T P R T GP Sbjct: 281 HDLEAGVRELRLLAAHAPPYNRRSKFPHRWWWVTLT-DEPFPRFSTVRTPRTDSAV--GP 337 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP--CLLFQIKRCSGPCTGEISSEKYME 182 F S + R +R+C + + R C ++ C + ++ Y Sbjct: 338 FRSRAEAFDAAALMARFTGVRTCTNRLGRKAFHGPTCPEREVSPCPA--VRDADAQTYAA 395 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR 224 V +A+ + G + ++ + YE+A RD Sbjct: 396 AVADARALIDGRDGRPLAAALSHIADLAERNRYETAARLRDH 437 >gi|325497101|gb|EGC94960.1| nucleotide excision repair endonuclease [Escherichia fergusonii ECD227] Length = 295 Score = 147 bits (371), Expect = 5e-33, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 98/254 (38%), Gaps = 19/254 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 ++P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 ELPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + + ++ + Sbjct: 86 AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCSLKLDNQ----RVEVVYAKEVDFSRAPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A + + ++ L R R C +KRC+G C G+ S E Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESQET 201 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + + ++ + L + I A ++ E H N D Sbjct: 202 HELRLQQSLERLRVVCWPWQGAI------ALKEQHPEMTQFHIIHNWLWLGAVNSLDEAT 255 Query: 240 NRMDCFSLYHNKNL 253 + + + + Sbjct: 256 TLVRTPAGFDHDGY 269 >gi|315443891|ref|YP_004076770.1| exonuclease, DNA polymerase III subunit epsilon family [Mycobacterium sp. Spyr1] gi|315262194|gb|ADT98935.1| exonuclease, DNA polymerase III, epsilon subunit family [Mycobacterium sp. Spyr1] Length = 617 Score = 147 bits (371), Expect = 5e-33, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 84/222 (37%), Gaps = 7/222 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY + VLYVG A +L++R+ Y + + R+ M S + Sbjct: 221 SLPRSPGVYLFRGPSAEVLYVGTAVDLRRRVGQYFNGADPRTRMKEMASLATAVDHVECA 280 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 ++EA + E ++ P +N + + ++ +T P R T GP Sbjct: 281 HDLEAGVRELRLLAAHAPPYNRRSKFPHRWWWVTLT-DEPFPRFSTVRTPRTDSAV--GP 337 Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP--CLLFQIKRCSGPCTGEISSEKYME 182 F S + R +R+C + + R C ++ C + ++ Y Sbjct: 338 FRSRADAFDAAALMARFTGVRTCTNRLGRKAFHGPTCPEREVSPCPA--VRDADAQTYAA 395 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR 224 V +A+ + G + ++ + YE+A RD Sbjct: 396 AVADARALIDGRDGRPLAAALSHIADLAERNRYETAARLRDH 437 >gi|296102788|ref|YP_003612934.1| nucleotide excision repair endonuclease [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057247|gb|ADF61985.1| nucleotide excision repair endonuclease [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 292 Score = 146 bits (369), Expect = 9e-33, Method: Composition-based stats. Identities = 53/182 (29%), Positives = 86/182 (47%), Gaps = 9/182 (4%) Query: 3 SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E++P+ PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + Sbjct: 28 LEELPKQPGVYIFHGESDTLPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWY 83 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG-S 120 T E+ ALLLEA +IK +P FN LR ++ + IT P + RD + Sbjct: 84 PTAGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQITAGK--PQVVYARDVDFSHAPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179 +G FA+ A + + +L L + R R C +KRC+G C G+ S E Sbjct: 142 LYGLFANKRAALQALQTLADEQQLCYSLLGLEATTRGRACFRSALKRCAGACCGKESVED 201 Query: 180 YM 181 + Sbjct: 202 HH 203 >gi|169629058|ref|YP_001702707.1| hypothetical protein MAB_1971c [Mycobacterium abscessus ATCC 19977] gi|169241025|emb|CAM62053.1| Probable DNA polymerase III epsilon subunit [Mycobacterium abscessus] Length = 600 Score = 146 bits (368), Expect = 1e-32, Method: Composition-based stats. Identities = 51/270 (18%), Positives = 96/270 (35%), Gaps = 10/270 (3%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ MP PGVY +G VLYVG A NL++R++ Y + R+ M++ + + Sbjct: 222 ADAMPYAPGVYLFRGPSGEVLYVGTAVNLRRRVQQYFTGADPRGRMREMVTIATAVDHVI 281 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +EA + E ++ P +N R + ++++T + P R ++ Sbjct: 282 CAHPLEAAVRELRLLGAHAPPYNRKSRFPHRWWWVVLT-EEPFPRFSVVRTTN--GRPTL 338 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTR--PC---LLFQIKRCSGPCTGEISS 177 GPF + L R +R+C + + C P + + Sbjct: 339 GPFRARGDATTAALVLARFTGVRTCTNRIGAGGRHGSACDGQSYPHDTASPCPAAAGVDA 398 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND- 236 Y + + L G + + + + + + YE+A RD AL + Sbjct: 399 TVYRDGLAPMLAVLDGTHGQPLQAMCDRVAELGAQRRYETAARQRDATTALIEVLARQHR 458 Query: 237 -SIYNRMDCFSLYHNKNLACIQTCFFHFGQ 265 R++ Q GQ Sbjct: 459 LHALARIEELIAARPDGEGGWQIAVVRHGQ 488 >gi|190147125|gb|ACE62928.1| UvrC [Serratia marcescens] Length = 98 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 40/86 (46%), Positives = 52/86 (60%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 + PGVY+M D G V+YVGKA +L+KR+ SY + + ++ I I TVT Sbjct: 13 TVTSQPGVYRMYDATGTVIYVGKAKDLKKRLASYFRQQVSSRKTETLVKNIAQIDVTVTH 72 Query: 65 TEVEALLLEANMIKRLKPRFNILLRD 90 TE EALLLE N K PR+N+LLRD Sbjct: 73 TETEALLLEHNYFKLYNPRYNVLLRD 98 >gi|257094710|ref|YP_003168351.1| Exonuclease RNase T and DNA polymerase III [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047234|gb|ACV36422.1| Exonuclease RNase T and DNA polymerase III [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 469 Score = 144 bits (364), Expect = 3e-32, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 10/198 (5%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +PE PGVY +LYVGK+ NL++R++++ S+ ++ + ++ +R+ Sbjct: 194 LDDLPESPGVYLFYGDNDALLYVGKSVNLRQRVRAHFASDLREYKEMRLSQEVRRLRWQE 253 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDK---SFPYILITDKHKIPALYKHRDSSTI-- 117 T E+ ALLLE+ +IK +P N LR ++ + + L + Sbjct: 254 TVGELGALLLESRLIKECQPIHNHRLRRSSDLCTWQLVQVAPGDC--RLRLVSGQTADFV 311 Query: 118 -QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGE 174 FG FA+ ++ + L + + RPC Q+K C G C G+ Sbjct: 312 RSNDLFGLFANRREATDSLRKVAAANGLCPIILGLEKPAGPGRPCFSHQVKHCRGACVGK 371 Query: 175 ISSEKYMEFVHEAKKFLS 192 + + + + A L Sbjct: 372 EAIGVHSDRMLSALMKLK 389 >gi|74316845|ref|YP_314585.1| DNA polymerase III subunit epsilon [Thiobacillus denitrificans ATCC 25259] gi|74056340|gb|AAZ96780.1| DNA polymerase III, epsilon subunit [Thiobacillus denitrificans ATCC 25259] Length = 470 Score = 144 bits (363), Expect = 4e-32, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 6/175 (3%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 E +PE PGVY +LYVGK+ NL++R+ S+ ++ ++ + Q+ + + Sbjct: 199 LEDLPESPGVYLFYGENDVLLYVGKSVNLRQRVFSHFAADTREYKAMQLTQQVRRVEWRE 258 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITD--KHKIPALYKHRDSSTIQ-- 118 T E+ ALLLE+ +IK P N LR + + + D Sbjct: 259 TVGELGALLLESRLIKEGAPAHNRRLRRASELCAWRLDEVAPGDFRPVLVTADDPDFGRD 318 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPC 171 G FGPF+S + + L + + PC FQ+++C G C Sbjct: 319 GDLFGPFSSRRQATLALRKIADAHQLCPVVLGLEKPARPDSPCFAFQVQKCRGAC 373 >gi|238894282|ref|YP_002919016.1| nucleotide excision repair endonuclease [Klebsiella pneumoniae NTUH-K2044] gi|238546598|dbj|BAH62949.1| endonuclease in nucleotide excision repair [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 287 Score = 144 bits (363), Expect = 4e-32, Method: Composition-based stats. Identities = 55/182 (30%), Positives = 83/182 (45%), Gaps = 11/182 (6%) Query: 3 SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PGVYQ + LY+GK+ NL+ R+ S++ T M+ Q I + Sbjct: 28 LEALPKLPGVYQFYGDSDTMPLYIGKSVNLRSRVLSHLR----TPEEAAMLRQSRRITWQ 83 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFP-YILITDKHKIPALYKHRDSS-TIQG 119 T E+ ALLLEA +IK +P FN LR +K ++ P + R+ + Q Sbjct: 84 RTAGELGALLLEARLIKEQQPLFNKRLRRNKQLCAWL---LADDRPQIVYAREVDFSHQQ 140 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSE 178 +G FA+ A + + SL L R R C + RC+G C G+ S E Sbjct: 141 HLYGLFANRRAALQMLQSLADEQRLCYGLLGLEPLSRGRACFRSALGRCAGACCGKESVE 200 Query: 179 KY 180 + Sbjct: 201 AH 202 >gi|298208469|ref|YP_003716648.1| probable DNA-directed DNA polymerase III (epsilon subunit) [Croceibacter atlanticus HTCC2559] gi|83848392|gb|EAP86261.1| probable DNA-directed DNA polymerase III (epsilon subunit) [Croceibacter atlanticus HTCC2559] Length = 457 Score = 144 bits (363), Expect = 4e-32, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 102/265 (38%), Gaps = 18/265 (6%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 E++P GVY M D G ++YVGK+ N++KR+ + S + + M +++ + T Sbjct: 191 EELPSSTGVYYMHDDDGEIIYVGKSKNIRKRLNQHFTS--ESVKSREMQNEVYAVTHEAT 248 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDD-------KSFPYILITDKHKIPALYKHRDSST 116 E+ ALL E IK+LKP++N L+ +++ D + LY ++ + Sbjct: 249 GNELVALLKENQEIKKLKPKYNRALKRSVFNYGLYQTY------DDNGYLKLYYSKNQTK 302 Query: 117 IQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176 + F + + ++ + F L + + C + IK+C G C E S Sbjct: 303 K--TPITTFTNKNQARSFMDRIIEEFGLC-LNLTSISNSDSACFNYSIKKCFGACVSEES 359 Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 E Y + + S N N+ E+ + L+H +H D Sbjct: 360 VEVYNKRIQAIIDKYSFSNQNMIVVDRGRETSEKSALLIENGVFMGVGYFDLNHQISHPD 419 Query: 237 SIYNRMDCFSLYHNKNLACIQTCFF 261 I + + + Sbjct: 420 IIRSIITPMENDRDAQHIIQSYMRR 444 >gi|295096129|emb|CBK85219.1| Excinuclease Cho [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 301 Score = 144 bits (363), Expect = 4e-32, Method: Composition-based stats. Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 9/186 (4%) Query: 3 SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + Sbjct: 37 LEALPKQPGVYFFHGDSDTMPLYIGKSVNIRSRVMSHLRTPDE----ASMLRQSRRITWI 92 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGS 120 T E+ ALLLEA +IK +P FN LR ++ + I P + R+ + + + Sbjct: 93 ETAGELGALLLEARLIKEQQPLFNKRLRRNRQLCSLQINAGK--PQIVYAREVDFSHEPN 150 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179 +G FA+ A +T+ SL L + R R C +KRC+G C G+ S E+ Sbjct: 151 LYGLFANKRAALQTLQSLADELQLCYGLLGLEATTRGRACFRSALKRCAGACCGKESVEE 210 Query: 180 YMEFVH 185 + Sbjct: 211 HHARFM 216 >gi|89901349|ref|YP_523820.1| DNA polymerase III subunit epsilon [Rhodoferax ferrireducens T118] gi|89346086|gb|ABD70289.1| DNA polymerase III, epsilon subunit [Rhodoferax ferrireducens T118] Length = 476 Score = 144 bits (363), Expect = 4e-32, Method: Composition-based stats. Identities = 50/181 (27%), Positives = 79/181 (43%), Gaps = 5/181 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE GVY LY+GK+ L+ R+ ++ + + R M +I I + T Sbjct: 196 DIPESVGVYIFYGEGPLPLYIGKSIKLRSRVLAHFQAASRAPREMRMAQEIRRIEWLETA 255 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKH-KIPALYKHRD---SSTIQGS 120 E+ ALLLEA ++K +P +N LR + + + D P L R G Sbjct: 256 GEIGALLLEARLVKERQPAYNRRLRRESTLCAWRLADDPLARPLLSLVRGEALQPQEFGQ 315 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 +G + S + ++ L + L A + + R C QI RC G C GE S E++ Sbjct: 316 MYGVYRSKNQALSSLRELADSQGLCLQALGLESGKGR-CFAHQIGRCQGVCCGEESPERH 374 Query: 181 M 181 Sbjct: 375 H 375 >gi|152969781|ref|YP_001334890.1| nucleotide excision repair endonuclease [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|330012506|ref|ZP_08307404.1| endonuclease cho [Klebsiella sp. MS 92-3] gi|150954630|gb|ABR76660.1| endonuclease in nucleotide excision repair [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328533799|gb|EGF60482.1| endonuclease cho [Klebsiella sp. MS 92-3] Length = 287 Score = 144 bits (363), Expect = 5e-32, Method: Composition-based stats. Identities = 55/182 (30%), Positives = 83/182 (45%), Gaps = 11/182 (6%) Query: 3 SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PGVYQ + LY+GK+ NL+ R+ S++ T M+ Q I + Sbjct: 28 LEALPKLPGVYQFHGDSDTMPLYIGKSVNLRSRVLSHLR----TPEEAAMLRQSRRITWQ 83 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFP-YILITDKHKIPALYKHRDSS-TIQG 119 T E+ ALLLEA +IK +P FN LR +K ++ P + R+ + Q Sbjct: 84 RTAGELGALLLEARLIKEQQPLFNKRLRRNKQLCAWL---LADDRPQIVYAREVDFSHQQ 140 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSE 178 +G FA+ A + + SL L R R C + RC+G C G+ S E Sbjct: 141 HLYGLFANRRAALQMLQSLADEQRLCYGLLGLEPLSRGRACFRSALGRCAGACCGKESVE 200 Query: 179 KY 180 + Sbjct: 201 AH 202 >gi|218548690|ref|YP_002382481.1| nucleotide excision repair endonuclease [Escherichia fergusonii ATCC 35469] gi|218356231|emb|CAQ88848.1| endonuclease of nucleotide excision repair [Escherichia fergusonii ATCC 35469] Length = 295 Score = 144 bits (362), Expect = 6e-32, Method: Composition-based stats. Identities = 53/254 (20%), Positives = 97/254 (38%), Gaps = 19/254 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 ++P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 ELPTRPGVYLFHGKSDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + + ++ Sbjct: 86 AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCSLKLDNQ----RTEVVYAKEVDFSRAPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ + + + ++ L R R C +KRC+G C G+ S E Sbjct: 142 LFGLFANRRSALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESQET 201 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + + ++ + L + I A ++ E H N D Sbjct: 202 HELRLQQSLERLRVVCWPWQGAI------ALKEQHPEMTQFHIIHNWLWLGAVNSLDEAT 255 Query: 240 NRMDCFSLYHNKNL 253 + + + + Sbjct: 256 TLVRTPAGFDHDGY 269 >gi|288549537|ref|ZP_06390716.1| excinuclease cho [Enterobacter cancerogenus ATCC 35316] gi|288318306|gb|EFC57244.1| excinuclease cho [Enterobacter cancerogenus ATCC 35316] Length = 301 Score = 144 bits (362), Expect = 6e-32, Method: Composition-based stats. Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 9/182 (4%) Query: 3 SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + Sbjct: 37 LEALPKQPGVYFFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRITWI 92 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGS 120 T E+ ALLLEA +IK +P FN LR ++ I + P + R+ + + + Sbjct: 93 QTAGELGALLLEARLIKEQQPLFNKRLRRNRQLCSIQVQAGK--PQVVYAREVDFSQEPN 150 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179 +G FA+ A +T+ +L L + R R C +KRC+G C G+ S E Sbjct: 151 LYGLFANKRAALQTVQTLADELQLCYGLLGLEATTRGRACFRSALKRCAGACCGKESVEA 210 Query: 180 YM 181 + Sbjct: 211 HH 212 >gi|262043052|ref|ZP_06016194.1| excinuclease cho [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039604|gb|EEW40733.1| excinuclease cho [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 270 Score = 143 bits (361), Expect = 7e-32, Method: Composition-based stats. Identities = 55/182 (30%), Positives = 83/182 (45%), Gaps = 11/182 (6%) Query: 3 SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PGVYQ + LY+GK+ NL+ R+ S++ T M+ Q I + Sbjct: 28 LEALPKLPGVYQFHGDSDTMPLYIGKSVNLRSRVLSHLR----TPEEAAMLRQSRRITWQ 83 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFP-YILITDKHKIPALYKHRDSS-TIQG 119 T E+ ALLLEA +IK +P FN LR +K ++ P + R+ + Q Sbjct: 84 RTAGELGALLLEARLIKEQQPLFNKRLRRNKQLCAWL---LADDRPQIVYAREVDFSHQQ 140 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSE 178 +G FA+ A + + SL L R R C + RC+G C G+ S E Sbjct: 141 HLYGLFANRRAALQMLQSLADEQRLCYGLLGLEPLSRGRACFRSALGRCAGACCGKESVE 200 Query: 179 KY 180 + Sbjct: 201 AH 202 >gi|226227841|ref|YP_002761947.1| putative exonuclease [Gemmatimonas aurantiaca T-27] gi|226091032|dbj|BAH39477.1| putative exonuclease [Gemmatimonas aurantiaca T-27] Length = 366 Score = 143 bits (361), Expect = 7e-32, Method: Composition-based stats. Identities = 71/245 (28%), Positives = 105/245 (42%), Gaps = 26/245 (10%) Query: 13 YQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLL 72 Y M G VLYVGK+ ++ R+ SY HR M+ + +I + +E ALL Sbjct: 2 YLMRGGRGDVLYVGKSTQVRTRLLSYFRLPWPEHRHARMLRETAHIEWEPHPSEFAALLR 61 Query: 73 EANMIKRLKPRFNILLRD--DKSFPYILITDKHKI-PALYKHR----DSSTIQGSYFGPF 125 E +I+ PR+N+ DK + +IT + P L R S GPF Sbjct: 62 EVRLIRAHLPRYNVRSARPLDK---WWVITIAKGLTPRLRVQRASAAARSRDVAQIIGPF 118 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRH----------------RTRPCLLFQIKRCSG 169 AS + + L LR C+D + H RT C ++ +RC G Sbjct: 119 ASRRPLVDALRVLNDALGLRDCSDRIRMHVRDVAELFEEHHPAMQRTPACHRYETRRCLG 178 Query: 170 PCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALS 229 PC G S +Y + AK L G + + ++ + R M A+ YE A RDRL AL Sbjct: 179 PCVGATSEYEYRTQLTRAKAVLEGRDDSPQQHLVREMAVASAALSYERAGWLRDRLTALQ 238 Query: 230 HIQNH 234 +++ Sbjct: 239 DLESQ 243 >gi|332530365|ref|ZP_08406310.1| excinuclease [Hylemonella gracilis ATCC 19624] gi|332040176|gb|EGI76557.1| excinuclease [Hylemonella gracilis ATCC 19624] Length = 261 Score = 143 bits (360), Expect = 9e-32, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 97/240 (40%), Gaps = 12/240 (5%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P GVY LY+GK+ +++ R+ S++ + + M++Q I F T Sbjct: 5 LPRRSGVYFFWGSGTLPLYIGKSVDIRSRVLSHIRAEDE----AEMMAQTQRIDFIETAG 60 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHK--IPALYKHRDSSTIQGS-YF 122 E+ ALLLEA++IK+L P +NI LR K+ I + + IP + D+ + Sbjct: 61 EMGALLLEAHLIKKLCPLYNIRLRRQKTLCSIRLDESGSVLIPEIVSGHDTEIAGADNLY 120 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 G F SV A ++ + L + L + + R C Q+K C G C G+ + + Sbjct: 121 GLFGSVHAAKEKLRELAQQHRLCMGLLGLEKISRRGCFGLQLKTCLGACVGKEDRSAHDQ 180 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242 + A +H ++ + D + L + ++ Sbjct: 181 RLRSAL-----QDHKVQAWPYAGAVDLVEQTDGWTQRHRIQGWRFLGTWCSKTNTFTAHE 235 >gi|324113489|gb|EGC07464.1| GIY-G catalytic domain-containing protein [Escherichia fergusonii B253] Length = 295 Score = 143 bits (360), Expect = 9e-32, Method: Composition-based stats. Identities = 53/254 (20%), Positives = 97/254 (38%), Gaps = 19/254 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 ++P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 ELPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + + ++ Sbjct: 86 AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCSLKLDNQ----RTEVVYAKEVDFSRAPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ + + + ++ L R R C +KRC+G C G+ S E Sbjct: 142 LFGLFANRRSALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESQET 201 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + + ++ + L + I A ++ E H N D Sbjct: 202 HELRLRQSLERLRVVCWPWQGAI------ALKEQHPEMTQFHIIHNWLWLGAVNSLDEAT 255 Query: 240 NRMDCFSLYHNKNL 253 + + + + Sbjct: 256 TLIRTPAGFDHDGY 269 >gi|327393688|dbj|BAK11110.1| exconuclease Cho [Pantoea ananatis AJ13355] Length = 287 Score = 143 bits (360), Expect = 9e-32, Method: Composition-based stats. Identities = 54/220 (24%), Positives = 89/220 (40%), Gaps = 15/220 (6%) Query: 6 MPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY + LY+GK+ NL+ R+ S+ + + M+ Q + + T Sbjct: 31 LPNQPGVYTFHGDSETLPLYIGKSVNLRSRVMSHFRTPDE----AKMLRQSRRVSWIPTA 86 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG-SYFG 123 ++ ALLLEA MIK +P FN LR ++ + IT + K P + RD Q + FG Sbjct: 87 GDLGALLLEAQMIKTQQPLFNKRLRKNRQLCSLRITPEGK-PDVVYARDVDFSQSPNLFG 145 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEKYME 182 + S A + + L + L + +R C ++RC+G C G+ + + Sbjct: 146 LYRSRFAALERLKQLADEYQLCHGLLGLEAVSASRGCFRSALRRCAGACCGKEPVSDHQD 205 Query: 183 F-------VHEAKKFLSGGNHNLKEKIARNMNQATLKEDY 215 V G ++E Y Sbjct: 206 RLLSALESVRVFCWPWQGAVALVEEGKHMTQIHVIDHWFY 245 >gi|145589827|ref|YP_001156424.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048233|gb|ABP34860.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 466 Score = 143 bits (360), Expect = 9e-32, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 78/194 (40%), Gaps = 5/194 (2%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +P+ PG Y LY+GK+ +L+ R+ + + + QI +I + T Sbjct: 200 DSIPDTPGCYIFYGDNKTPLYIGKSISLRNRVMGHFQGALTQRKEMKLSLQIRDIDWIET 259 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHK---IPALYKHRD-SSTIQG 119 E+ AL+LE+ +IK P NI LR K + + +P L H + +Q Sbjct: 260 SGELGALILESRLIKERMPSMNIKLRRSKDLCGWSLVEDESGVLLPQLVTHHQLAPGLQE 319 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH-RTRPCLLFQIKRCSGPCTGEISSE 178 + +G F S + ++ + L + + + C +Q+K+C G C Sbjct: 320 NLYGLFYSKREAHSYLKAIAKKHHLCEALLGLEKRVEGKSCFGYQVKQCGGACLNLTPIT 379 Query: 179 KYMEFVHEAKKFLS 192 + + + Sbjct: 380 LHNLQLKTVLELFK 393 >gi|291617233|ref|YP_003519975.1| Cho [Pantoea ananatis LMG 20103] gi|291152263|gb|ADD76847.1| Cho [Pantoea ananatis LMG 20103] Length = 287 Score = 142 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 54/220 (24%), Positives = 89/220 (40%), Gaps = 15/220 (6%) Query: 6 MPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY + LY+GK+ NL+ R+ S+ + + M+ Q + + T Sbjct: 31 LPNQPGVYTFHGDSETLPLYIGKSVNLRSRVMSHFRTPDE----AKMLRQSRRVSWIPTA 86 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG-SYFG 123 ++ ALLLEA MIK +P FN LR ++ + IT + K P + RD Q + FG Sbjct: 87 GDLGALLLEAQMIKTQQPLFNKRLRKNRQLCSLRITPEGK-PDVVYARDVDFSQSPNLFG 145 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEKYME 182 + S A + + L + L + +R C ++RC+G C G+ + + Sbjct: 146 LYRSRFAALERLKQLADEYQLCHGLLGLEAVSASRGCFRSALRRCAGACCGKEPVSDHQD 205 Query: 183 F-------VHEAKKFLSGGNHNLKEKIARNMNQATLKEDY 215 V G ++E Y Sbjct: 206 RLLSALESVRVFCWPWQGAVALVEEGKHMTQIHVIDHWFY 245 >gi|206579748|ref|YP_002239041.1| excinuclease cho [Klebsiella pneumoniae 342] gi|290512907|ref|ZP_06552271.1| nucleotide excision repair endonuclease [Klebsiella sp. 1_1_55] gi|206568806|gb|ACI10582.1| excinuclease cho [Klebsiella pneumoniae 342] gi|289774520|gb|EFD82524.1| nucleotide excision repair endonuclease [Klebsiella sp. 1_1_55] Length = 287 Score = 142 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 56/181 (30%), Positives = 83/181 (45%), Gaps = 9/181 (4%) Query: 3 SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PGVYQ + LY+GK+ NL+ R+ S++ T M+ Q I + Sbjct: 28 LEALPKLPGVYQFHGDSDTMPLYIGKSVNLRSRVLSHLR----TPEEAAMLRQSRRITWQ 83 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGS 120 T E+ ALLLEA +IK +P FN LR +K + D P + R+ + Q Sbjct: 84 RTAGELGALLLEARLIKEQQPLFNKRLRRNKQLCAWRLADHR--PQIVYAREVDFSHQQH 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 +G FA+ A + + SL L R R C + RC+G C G+ S E Sbjct: 142 LYGLFANRRAALQMLQSLADEQRLCYGLLGLEPLSRGRACFRSALGRCAGACCGKESVEA 201 Query: 180 Y 180 + Sbjct: 202 H 202 >gi|288935945|ref|YP_003440004.1| excinuclease ABC C subunit domain protein [Klebsiella variicola At-22] gi|288890654|gb|ADC58972.1| Excinuclease ABC C subunit domain protein [Klebsiella variicola At-22] Length = 287 Score = 142 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 56/181 (30%), Positives = 83/181 (45%), Gaps = 9/181 (4%) Query: 3 SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PGVYQ + LY+GK+ NL+ R+ S++ T M+ Q I + Sbjct: 28 LEALPKLPGVYQFHGDSDTMPLYIGKSVNLRSRVLSHLR----TPEEAAMLRQSRRITWQ 83 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGS 120 T E+ ALLLEA +IK +P FN LR +K + D P + R+ + Q Sbjct: 84 RTAGELGALLLEARLIKEQQPLFNKRLRRNKQLCAWRLADHR--PQIVYAREVDFSHQQH 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 +G FA+ A + + SL L R R C + RC+G C G+ S E Sbjct: 142 LYGLFANRRAALQMLQSLADEQRLCYGLLGLEPLSRGRACFRSALGRCAGACCGKESVEA 201 Query: 180 Y 180 + Sbjct: 202 H 202 >gi|313619291|gb|EFR91030.1| excinuclease ABC subunit C [Listeria innocua FSL S4-378] Length = 88 Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats. Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 1/77 (1%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY + + + ++ +I + + VT + Sbjct: 13 LPDQPGCYLMKDRQGTIIYVGKAKVLKNRVRSYFSGTHDS-KTQRLVQEIVDFEYIVTSS 71 Query: 66 EVEALLLEANMIKRLKP 82 VEALLLE N+IK+ P Sbjct: 72 NVEALLLEINLIKKHDP 88 >gi|171060928|ref|YP_001793277.1| excinuclease ABC subunit C [Leptothrix cholodnii SP-6] gi|170778373|gb|ACB36512.1| Excinuclease ABC C subunit domain protein [Leptothrix cholodnii SP-6] Length = 275 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 50/193 (25%), Positives = 77/193 (39%), Gaps = 7/193 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 +P PGVY + LY+GK+ N++ R+ S++ M+ Q + + Sbjct: 7 DLRALPSAPGVYLFHGESALPLYIGKSVNIRSRVLSHLREPGE----ARMLLQTRRVTWI 62 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHK--IPALYKHRDSS-TIQ 118 T E+ ALLLE+ +IK +P +N LR + PAL RD + Sbjct: 63 RTAGEIGALLLESRLIKAQQPLYNKQLRRSRELCSWRFCGSQPAVAPALVYSRDVDFAVT 122 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 FG F S A + + + L A + R C Q+ RC G C G S+ Sbjct: 123 DGLFGLFRSAHAAKDFLIDTAQAHRLCLVALGLEPATRRGCFGLQLGRCDGVCVGRESAA 182 Query: 179 KYMEFVHEAKKFL 191 + V +A Sbjct: 183 SHALRVAQALAQC 195 >gi|193068957|ref|ZP_03049916.1| excinuclease cho [Escherichia coli E110019] gi|192957752|gb|EDV88196.1| excinuclease cho [Escherichia coli E110019] Length = 295 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 96/254 (37%), Gaps = 19/254 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 DLPTRPGVYLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + + +K + Sbjct: 86 AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A + + S L R R C +KRC+G C G+ S E+ Sbjct: 142 LFGLFANRRAALQALQSCADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + + ++ + L A ++ E H + N + Sbjct: 202 HALRLRQSLERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEAT 255 Query: 240 NRMDCFSLYHNKNL 253 + + + + Sbjct: 256 TLIRTPAGFDHDGY 269 >gi|317047851|ref|YP_004115499.1| excinuclease ABC subunit C domain-containing protein [Pantoea sp. At-9b] gi|316949468|gb|ADU68943.1| Excinuclease ABC C subunit domain protein [Pantoea sp. At-9b] Length = 286 Score = 141 bits (356), Expect = 3e-31, Method: Composition-based stats. Identities = 51/190 (26%), Positives = 84/190 (44%), Gaps = 9/190 (4%) Query: 6 MPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY + LY+GK+ NL+ R+ S+ + + M+ Q I + T Sbjct: 31 LPNQPGVYVFHGESDNLPLYIGKSVNLRSRVMSHFRTPDE----ASMLRQARRISWIPTA 86 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGSYFG 123 ++ A LLEA MIK +P FN LR ++ + + +P + RD + + +G Sbjct: 87 GDLGAQLLEAQMIKTQQPLFNKRLRKNRQLCSLQL--NDTVPQVVYARDLDFSRTANLYG 144 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEKYME 182 F S A + + S+ L + R R C +KRC+G C G E + + Sbjct: 145 LFRSRHAALEKLKSIADEQRLCHGLLGLENLRSGRGCFRAALKRCAGACCGNEPPEAHQQ 204 Query: 183 FVHEAKKFLS 192 + +A L Sbjct: 205 RLQQALDALR 214 >gi|94312850|ref|YP_586059.1| DNA polymerase III subunit epsilon [Cupriavidus metallidurans CH34] gi|93356702|gb|ABF10790.1| DNA polymerase III, epsilon subunit [Cupriavidus metallidurans CH34] Length = 530 Score = 141 bits (356), Expect = 3e-31, Method: Composition-based stats. Identities = 53/193 (27%), Positives = 88/193 (45%), Gaps = 3/193 (1%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + + +P+ PGVY LYVGK+ +L++RI+++ ++ R + + + + Sbjct: 222 ALDDVPDRPGVYLFYGDDDVPLYVGKSIHLRQRIRAHFAGDHSNAREMRLSRSVRRVEWR 281 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGS 120 T E+ ALL EA+++K L+P N LLR + + D P L R + + Sbjct: 282 ETGGEIGALLSEAHLVKTLRPLHNHLLRQNTELFSWEMLDGLPAPRLRSDRHVDFSRHAA 341 Query: 121 YFGPFASVDAVEKTINSLQRTFFLR--SCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 +G F S + + + SL L + R PC Q+ RC+G CTGE S Sbjct: 342 LYGAFPSRASAQARLRSLADEHRLCLATLMLEGTTRRGSPCFARQLHRCAGACTGEESQT 401 Query: 179 KYMEFVHEAKKFL 191 + E EA + Sbjct: 402 AHRERTVEAMASM 414 >gi|218512457|ref|ZP_03509297.1| excinuclease ABC subunit C [Rhizobium etli 8C-3] Length = 89 Score = 141 bits (356), Expect = 3e-31, Method: Composition-based stats. Identities = 53/87 (60%), Positives = 67/87 (77%), Gaps = 1/87 (1%) Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 LYFIQR+RDEAHRFAI +HR RRKK +PLDEI GIGP RKR LLQ FGT K +SR++ Sbjct: 2 LYFIQRMRDEAHRFAIGSHRARRKKEMVKNPLDEIGGIGPSRKRALLQHFGTAKAVSRAA 61 Query: 586 PETLASIEGISKKIACKIYNHFHKNTS 612 L ++EGIS+ +A ++YNHFH + + Sbjct: 62 LSDLMAVEGISEAVARQVYNHFHDDAA 88 >gi|82776817|ref|YP_403166.1| nucleotide excision repair endonuclease [Shigella dysenteriae Sd197] gi|81240965|gb|ABB61675.1| putative excinuclease subunit [Shigella dysenteriae Sd197] Length = 288 Score = 141 bits (356), Expect = 3e-31, Method: Composition-based stats. Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 13/181 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +P PGVY + LY+GK+ N++ R++S++ + M+ Q I + T Sbjct: 30 DLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVRSHLRPPDE----AAMLRQSRRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + + +K + Sbjct: 86 AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A + + S+ L R R C +KRC+G C G+ S E+ Sbjct: 142 LFGLFANRRAALQALQSIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201 Query: 180 Y 180 + Sbjct: 202 H 202 >gi|255021102|ref|ZP_05293155.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC 51756] gi|254969516|gb|EET27025.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC 51756] Length = 475 Score = 141 bits (356), Expect = 3e-31, Method: Composition-based stats. Identities = 54/215 (25%), Positives = 89/215 (41%), Gaps = 31/215 (14%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P+ PGVY D A +LYVGK+ L++R+ + ++ R ++ QI + + Sbjct: 197 LDALPDRPGVYLCYDEADSLLYVGKSIRLRERVWDHFYAATSQQREMRLVQQIRRLEWIE 256 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYI----------LIT-----DKHKIPA 107 T TE+ ALLLEA +IK +P I L T + P Sbjct: 257 TPTELSALLLEARLIKERQP--------------ILNRRLRRRENLFTIAWEGIERGSPR 302 Query: 108 LYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRC 167 + RD G +G FA+ +++ L R L A + + + PC Q+K+C Sbjct: 303 IVPLRDC--DGGELYGSFANAYRARQSLRRLARRHGLCLKALGLEKPTSGPCFAHQLKQC 360 Query: 168 SGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKI 202 G C G S + + A + L + + Sbjct: 361 RGACCGAESRLLHDLRLSAALRHLRIEHWPWDGPM 395 >gi|301026471|ref|ZP_07189903.1| GIY-YIG catalytic domain protein [Escherichia coli MS 69-1] gi|300395537|gb|EFJ79075.1| GIY-YIG catalytic domain protein [Escherichia coli MS 69-1] Length = 295 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 98/254 (38%), Gaps = 19/254 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 DLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + + +K + Sbjct: 86 AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A + + ++ L R R C +KRC+G C G+ S E+ Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + + ++ + L N A ++ E H + N + Sbjct: 202 HALRLRQSLERLRVVCWPW------NGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEAT 255 Query: 240 NRMDCFSLYHNKNL 253 + + + + Sbjct: 256 TLIRTPAGFDHDGY 269 >gi|293410057|ref|ZP_06653633.1| nucleotide excision repair endonuclease [Escherichia coli B354] gi|291470525|gb|EFF13009.1| nucleotide excision repair endonuclease [Escherichia coli B354] Length = 295 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 98/254 (38%), Gaps = 19/254 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 DLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + + +K + Sbjct: 86 AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A + + ++ L R R C +KRC+G C G+ S E+ Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + + ++ + L N A ++ E H + N + Sbjct: 202 HALRLRQSLERLRVVCWPW------NGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEAT 255 Query: 240 NRMDCFSLYHNKNL 253 + + + + Sbjct: 256 TLIRAPAGFDHDGY 269 >gi|168749441|ref|ZP_02774463.1| excinuclease cho [Escherichia coli O157:H7 str. EC4113] gi|168756745|ref|ZP_02781752.1| excinuclease cho [Escherichia coli O157:H7 str. EC4401] gi|168770505|ref|ZP_02795512.1| excinuclease cho [Escherichia coli O157:H7 str. EC4486] gi|168774956|ref|ZP_02799963.1| excinuclease cho [Escherichia coli O157:H7 str. EC4196] gi|168782159|ref|ZP_02807166.1| excinuclease cho [Escherichia coli O157:H7 str. EC4076] gi|195937425|ref|ZP_03082807.1| nucleotide excision repair endonuclease [Escherichia coli O157:H7 str. EC4024] gi|208810455|ref|ZP_03252331.1| excinuclease cho [Escherichia coli O157:H7 str. EC4206] gi|208817044|ref|ZP_03258164.1| excinuclease cho [Escherichia coli O157:H7 str. EC4045] gi|208821282|ref|ZP_03261602.1| excinuclease cho [Escherichia coli O157:H7 str. EC4042] gi|209400159|ref|YP_002270810.1| excinuclease cho [Escherichia coli O157:H7 str. EC4115] gi|254793359|ref|YP_003078196.1| nucleotide excision repair endonuclease [Escherichia coli O157:H7 str. TW14359] gi|187769464|gb|EDU33308.1| excinuclease cho [Escherichia coli O157:H7 str. EC4196] gi|188016228|gb|EDU54350.1| excinuclease cho [Escherichia coli O157:H7 str. EC4113] gi|189000303|gb|EDU69289.1| excinuclease cho [Escherichia coli O157:H7 str. EC4076] gi|189356142|gb|EDU74561.1| excinuclease cho [Escherichia coli O157:H7 str. EC4401] gi|189360647|gb|EDU79066.1| excinuclease cho [Escherichia coli O157:H7 str. EC4486] gi|208724971|gb|EDZ74678.1| excinuclease cho [Escherichia coli O157:H7 str. EC4206] gi|208731387|gb|EDZ80076.1| excinuclease cho [Escherichia coli O157:H7 str. EC4045] gi|208741405|gb|EDZ89087.1| excinuclease cho [Escherichia coli O157:H7 str. EC4042] gi|209161559|gb|ACI38992.1| excinuclease cho [Escherichia coli O157:H7 str. EC4115] gi|209768636|gb|ACI82630.1| putative excinuclease subunit [Escherichia coli] gi|254592759|gb|ACT72120.1| endonuclease of nucleotide excision repair [Escherichia coli O157:H7 str. TW14359] Length = 295 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 97/254 (38%), Gaps = 19/254 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 DLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + + +K + Sbjct: 86 AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A + + S+ L R R C +KRC+G C G+ S E+ Sbjct: 142 LFGLFANRRAALQALQSIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + + ++ + L A ++ E H + N + Sbjct: 202 HALRLRQSLERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSQEEAT 255 Query: 240 NRMDCFSLYHNKNL 253 + + + + Sbjct: 256 TLIRTPAGFDHDGY 269 >gi|82543856|ref|YP_407803.1| nucleotide excision repair endonuclease [Shigella boydii Sb227] gi|187732908|ref|YP_001880533.1| nucleotide excision repair endonuclease [Shigella boydii CDC 3083-94] gi|81245267|gb|ABB65975.1| putative excinuclease subunit [Shigella boydii Sb227] gi|187429900|gb|ACD09174.1| excinuclease cho [Shigella boydii CDC 3083-94] gi|320173592|gb|EFW48785.1| nucleotide excision repair endonuclease [Shigella dysenteriae CDC 74-1112] Length = 295 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 53/254 (20%), Positives = 97/254 (38%), Gaps = 19/254 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 DLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + + +K + Sbjct: 86 AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A + + ++ L R R C +KRC+G C G+ S E+ Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + + ++ + L A ++ E H + N + Sbjct: 202 HALRLRQSLERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEDAT 255 Query: 240 NRMDCFSLYHNKNL 253 + + + + Sbjct: 256 TLIRTPAGFDHDGY 269 >gi|218705239|ref|YP_002412758.1| nucleotide excision repair endonuclease [Escherichia coli UMN026] gi|293405239|ref|ZP_06649231.1| nucleotide excision repair endonuclease [Escherichia coli FVEC1412] gi|298380882|ref|ZP_06990481.1| excinuclease cho [Escherichia coli FVEC1302] gi|218432336|emb|CAR13226.1| endonuclease of nucleotide excision repair [Escherichia coli UMN026] gi|291427447|gb|EFF00474.1| nucleotide excision repair endonuclease [Escherichia coli FVEC1412] gi|298278324|gb|EFI19838.1| excinuclease cho [Escherichia coli FVEC1302] Length = 295 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 53/254 (20%), Positives = 97/254 (38%), Gaps = 19/254 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 DLPTRPGVYLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + + +K + Sbjct: 86 AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A + + ++ L R R C +KRC+G C G+ S E+ Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + + ++ + L A ++ E H + N + Sbjct: 202 HALRLRQSLERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEAT 255 Query: 240 NRMDCFSLYHNKNL 253 + + + + Sbjct: 256 TLIRTPAGFDHDGY 269 >gi|157156765|ref|YP_001463037.1| nucleotide excision repair endonuclease [Escherichia coli E24377A] gi|191169568|ref|ZP_03031292.1| excinuclease cho [Escherichia coli B7A] gi|260855606|ref|YP_003229497.1| endonuclease [Escherichia coli O26:H11 str. 11368] gi|260868266|ref|YP_003234668.1| endonuclease [Escherichia coli O111:H- str. 11128] gi|300924787|ref|ZP_07140728.1| GIY-YIG catalytic domain protein [Escherichia coli MS 182-1] gi|301327475|ref|ZP_07220709.1| GIY-YIG catalytic domain protein [Escherichia coli MS 78-1] gi|309793514|ref|ZP_07687941.1| GIY-YIG catalytic domain protein [Escherichia coli MS 145-7] gi|157078795|gb|ABV18503.1| excinuclease cho [Escherichia coli E24377A] gi|190900390|gb|EDV60215.1| excinuclease cho [Escherichia coli B7A] gi|257754255|dbj|BAI25757.1| endonuclease [Escherichia coli O26:H11 str. 11368] gi|257764622|dbj|BAI36117.1| endonuclease [Escherichia coli O111:H- str. 11128] gi|300419040|gb|EFK02351.1| GIY-YIG catalytic domain protein [Escherichia coli MS 182-1] gi|300845952|gb|EFK73712.1| GIY-YIG catalytic domain protein [Escherichia coli MS 78-1] gi|308123101|gb|EFO60363.1| GIY-YIG catalytic domain protein [Escherichia coli MS 145-7] Length = 295 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 97/254 (38%), Gaps = 19/254 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 DLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + + +K + Sbjct: 86 AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A + + S+ L R R C +KRC+G C G+ S E+ Sbjct: 142 LFGLFANRRAALQALQSIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + + ++ + L A ++ E H + N + Sbjct: 202 HALRLRQSLERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEDAT 255 Query: 240 NRMDCFSLYHNKNL 253 + + + + Sbjct: 256 TLIRTPAGFDHDGY 269 >gi|326382523|ref|ZP_08204214.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL B-59395] gi|326198642|gb|EGD55825.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL B-59395] Length = 623 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 82/224 (36%), Gaps = 17/224 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PGVY A VLY+G A +L +R+ Y + ++ R+ M+S + Sbjct: 256 LPRRPGVYLFRGPADEVLYIGTAVDLHRRVSGYFNGSDGRARMAEMVSLAVRVDHVECAH 315 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125 +EA + E N++ KP +N R+ + +I +T + P L R GP Sbjct: 316 ALEAGVAELNLLGVHKPSYNRRSRNPQRGWWIALT-AERFPRLRVTRSP---GPESLGPV 371 Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKR-------------CSGPCT 172 AS + + LR+C + + C C Sbjct: 372 ASRAVAADVADVIAGAAGLRTCTAELRKASHHWCEGSAQADRLPDPLVAAVPGVCRAASD 431 Query: 173 GEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYE 216 + Y+ V ++ +SG + L + + + + +E Sbjct: 432 RPQTVTDYLCRVEAVRELISGRSDALVVALHERVASLSQQHRFE 475 >gi|331673288|ref|ZP_08374056.1| excinuclease cho [Escherichia coli TA280] gi|331069486|gb|EGI40873.1| excinuclease cho [Escherichia coli TA280] Length = 295 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 97/254 (38%), Gaps = 19/254 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 DLPTRPGVYLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + + +K + Sbjct: 86 AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A + + ++ L R R C +KRC+G C G+ S E+ Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + + +A + L A ++ E H + N + Sbjct: 202 HALRLRQALERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEAT 255 Query: 240 NRMDCFSLYHNKNL 253 + + + + Sbjct: 256 TLIRTPAGFDHDGY 269 >gi|284921660|emb|CBG34732.1| excinuclease Cho [Escherichia coli 042] Length = 295 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 98/254 (38%), Gaps = 19/254 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 DLPTRPGVYLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + + +K + Sbjct: 86 AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A + + ++ L R R C +KRC+G C G+ S E+ Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + + ++ + L N A ++ E H + N + Sbjct: 202 HALRLRQSLERLRVVCWPW------NGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEAT 255 Query: 240 NRMDCFSLYHNKNL 253 + + + + Sbjct: 256 TLIRTPAGFDHDGY 269 >gi|329901259|ref|ZP_08272784.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium IMCC9480] gi|327549191|gb|EGF33783.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium IMCC9480] Length = 462 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 46/212 (21%), Positives = 83/212 (39%), Gaps = 1/212 (0%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +P GVY LY+GKA NL++R+ S+ ++ + + + QI I + T Sbjct: 199 DDLPSTHGVYLFFGEGALPLYIGKANNLRRRVLSHFSGDHLSAKELELSQQIRRIEWIDT 258 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 E+ ALL EA ++K++ P N LR + + + +I + + + FG Sbjct: 259 AGELGALLKEAMLVKQMSPSHNRQLRRSSAACLWRLDAQSQITLVKTDDLLAADEAELFG 318 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEKYME 182 PFA+ + ++ L + + +PC Q+ +C G C S + Sbjct: 319 PFATHRKATTALTAIATARQLCLVLLGLEKVAAGKPCFASQVGQCKGACCARESLASHTA 378 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKED 214 + A + I A D Sbjct: 379 RLRMALETSRLHPWPYAGPIGIREEAALHVID 410 >gi|16129695|ref|NP_416255.1| endonuclease of nucleotide excision repair [Escherichia coli str. K-12 substr. MG1655] gi|74311940|ref|YP_310359.1| nucleotide excision repair endonuclease [Shigella sonnei Ss046] gi|89108580|ref|AP_002360.1| endonuclease of nucleotide excision repair [Escherichia coli str. K-12 substr. W3110] gi|157161201|ref|YP_001458519.1| nucleotide excision repair endonuclease [Escherichia coli HS] gi|170019912|ref|YP_001724866.1| nucleotide excision repair endonuclease [Escherichia coli ATCC 8739] gi|170081398|ref|YP_001730718.1| endonuclease of nucleotide excision repair [Escherichia coli str. K-12 substr. DH10B] gi|188495567|ref|ZP_03002837.1| excinuclease cho [Escherichia coli 53638] gi|194438478|ref|ZP_03070567.1| excinuclease cho [Escherichia coli 101-1] gi|238900955|ref|YP_002926751.1| endonuclease of nucleotide excision repair [Escherichia coli BW2952] gi|253773305|ref|YP_003036136.1| nucleotide excision repair endonuclease [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161800|ref|YP_003044908.1| nucleotide excision repair endonuclease [Escherichia coli B str. REL606] gi|256022596|ref|ZP_05436461.1| nucleotide excision repair endonuclease [Escherichia sp. 4_1_40B] gi|300951344|ref|ZP_07165187.1| GIY-YIG catalytic domain protein [Escherichia coli MS 116-1] gi|300958634|ref|ZP_07170758.1| GIY-YIG catalytic domain protein [Escherichia coli MS 175-1] gi|301025328|ref|ZP_07188891.1| GIY-YIG catalytic domain protein [Escherichia coli MS 196-1] gi|301647935|ref|ZP_07247711.1| GIY-YIG catalytic domain protein [Escherichia coli MS 146-1] gi|307138399|ref|ZP_07497755.1| nucleotide excision repair endonuclease [Escherichia coli H736] gi|331642341|ref|ZP_08343476.1| excinuclease cho [Escherichia coli H736] gi|20178186|sp|P76213|CHO_ECOLI RecName: Full=Excinuclease cho; AltName: Full=Endonuclease cho; AltName: Full=UvrC homolog protein gi|1788037|gb|AAC74811.1| endonuclease of nucleotide excision repair [Escherichia coli str. K-12 substr. MG1655] gi|73855417|gb|AAZ88124.1| putative excinuclease subunit [Shigella sonnei Ss046] gi|85675098|dbj|BAE76514.1| endonuclease of nucleotide excision repair [Escherichia coli str. K12 substr. W3110] gi|157066881|gb|ABV06136.1| excinuclease cho [Escherichia coli HS] gi|169754840|gb|ACA77539.1| Excinuclease ABC C subunit domain protein [Escherichia coli ATCC 8739] gi|169889233|gb|ACB02940.1| endonuclease of nucleotide excision repair [Escherichia coli str. K-12 substr. DH10B] gi|188490766|gb|EDU65869.1| excinuclease cho [Escherichia coli 53638] gi|194422488|gb|EDX38486.1| excinuclease cho [Escherichia coli 101-1] gi|238861029|gb|ACR63027.1| endonuclease of nucleotide excision repair [Escherichia coli BW2952] gi|242377462|emb|CAQ32215.1| endonuclease of nucleotide excision repair [Escherichia coli BL21(DE3)] gi|253324349|gb|ACT28951.1| Excinuclease ABC C subunit domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973701|gb|ACT39372.1| endonuclease of nucleotide excision repair [Escherichia coli B str. REL606] gi|253977895|gb|ACT43565.1| endonuclease of nucleotide excision repair [Escherichia coli BL21(DE3)] gi|260449137|gb|ACX39559.1| Excinuclease ABC C subunit domain protein [Escherichia coli DH1] gi|299880126|gb|EFI88337.1| GIY-YIG catalytic domain protein [Escherichia coli MS 196-1] gi|300314685|gb|EFJ64469.1| GIY-YIG catalytic domain protein [Escherichia coli MS 175-1] gi|300449407|gb|EFK13027.1| GIY-YIG catalytic domain protein [Escherichia coli MS 116-1] gi|301073958|gb|EFK88764.1| GIY-YIG catalytic domain protein [Escherichia coli MS 146-1] gi|309701963|emb|CBJ01277.1| excinuclease Cho [Escherichia coli ETEC H10407] gi|315136382|dbj|BAJ43541.1| nucleotide excision repair endonuclease [Escherichia coli DH1] gi|323936998|gb|EGB33278.1| GIY-YIG catalytic domain-containing protein [Escherichia coli E1520] gi|323940594|gb|EGB36785.1| GIY-G catalytic domain-containing protein [Escherichia coli E482] gi|323962051|gb|EGB57648.1| GIY-G catalytic domain-containing protein [Escherichia coli H489] gi|323974016|gb|EGB69187.1| GIY-G catalytic domain-containing protein [Escherichia coli TA007] gi|331039139|gb|EGI11359.1| excinuclease cho [Escherichia coli H736] Length = 295 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 53/254 (20%), Positives = 97/254 (38%), Gaps = 19/254 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 DLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + + +K + Sbjct: 86 AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A + + ++ L R R C +KRC+G C G+ S E+ Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + + ++ + L A ++ E H + N + Sbjct: 202 HALRLRQSLERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEAT 255 Query: 240 NRMDCFSLYHNKNL 253 + + + + Sbjct: 256 TLIRTPAGFDHDGY 269 >gi|293415058|ref|ZP_06657701.1| excinuclease cho [Escherichia coli B185] gi|291432706|gb|EFF05685.1| excinuclease cho [Escherichia coli B185] Length = 295 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 53/254 (20%), Positives = 98/254 (38%), Gaps = 19/254 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 DLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + + +K + Sbjct: 86 AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSQAPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A + + ++ L R R C +KRC+G C G+ S E+ Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + + ++ + L A ++ E H + + N + Sbjct: 202 HALRLRQSLERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGVVNSLEEAT 255 Query: 240 NRMDCFSLYHNKNL 253 + + + + Sbjct: 256 TLIRTPAGFDHDGY 269 >gi|209919102|ref|YP_002293186.1| nucleotide excision repair endonuclease [Escherichia coli SE11] gi|307310687|ref|ZP_07590333.1| Excinuclease ABC C subunit domain protein [Escherichia coli W] gi|209912361|dbj|BAG77435.1| excinuclease [Escherichia coli SE11] gi|306908865|gb|EFN39361.1| Excinuclease ABC C subunit domain protein [Escherichia coli W] gi|315061044|gb|ADT75371.1| endonuclease of nucleotide excision repair [Escherichia coli W] gi|323378383|gb|ADX50651.1| Excinuclease ABC C subunit domain protein [Escherichia coli KO11] gi|324016496|gb|EGB85715.1| GIY-YIG catalytic domain protein [Escherichia coli MS 117-3] Length = 295 Score = 141 bits (354), Expect = 4e-31, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 97/254 (38%), Gaps = 19/254 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 DLPTRPGVYLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + + +K + Sbjct: 86 AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A + + S+ L R R C +KRC+G C G+ S E+ Sbjct: 142 LFGLFANRRAALQALQSIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + + ++ + L A ++ E H + N + Sbjct: 202 HALRLRQSLERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEDAT 255 Query: 240 NRMDCFSLYHNKNL 253 + + + + Sbjct: 256 TLIRTPAGFDHDGY 269 >gi|15802152|ref|NP_288174.1| nucleotide excision repair endonuclease [Escherichia coli O157:H7 EDL933] gi|15831701|ref|NP_310474.1| nucleotide excision repair endonuclease [Escherichia coli O157:H7 str. Sakai] gi|168762193|ref|ZP_02787200.1| excinuclease cho [Escherichia coli O157:H7 str. EC4501] gi|168788140|ref|ZP_02813147.1| excinuclease cho [Escherichia coli O157:H7 str. EC869] gi|168800076|ref|ZP_02825083.1| excinuclease cho [Escherichia coli O157:H7 str. EC508] gi|193065778|ref|ZP_03046841.1| excinuclease cho [Escherichia coli E22] gi|194428498|ref|ZP_03061037.1| excinuclease cho [Escherichia coli B171] gi|217328708|ref|ZP_03444789.1| excinuclease cho [Escherichia coli O157:H7 str. TW14588] gi|218695299|ref|YP_002402966.1| nucleotide excision repair endonuclease [Escherichia coli 55989] gi|256018066|ref|ZP_05431931.1| nucleotide excision repair endonuclease [Shigella sp. D9] gi|260844091|ref|YP_003221869.1| endonuclease [Escherichia coli O103:H2 str. 12009] gi|261227767|ref|ZP_05942048.1| nucleotide excision repair endonuclease [Escherichia coli O157:H7 str. FRIK2000] gi|261258068|ref|ZP_05950601.1| nucleotide excision repair endonuclease [Escherichia coli O157:H7 str. FRIK966] gi|291282920|ref|YP_003499738.1| Excinuclease cho [Escherichia coli O55:H7 str. CB9615] gi|293446113|ref|ZP_06662535.1| hypothetical protein ECCG_00261 [Escherichia coli B088] gi|332279106|ref|ZP_08391519.1| nucleotide excision repair endonuclease [Shigella sp. D9] gi|20178210|sp|Q8XDZ7|CHO_ECO57 RecName: Full=Excinuclease cho; AltName: Full=Endonuclease cho; AltName: Full=UvrC homolog protein gi|12515760|gb|AAG56727.1|AE005397_4 putative excinuclease subunit [Escherichia coli O157:H7 str. EDL933] gi|13361914|dbj|BAB35870.1| putative excinuclease subunit [Escherichia coli O157:H7 str. Sakai] gi|189367474|gb|EDU85890.1| excinuclease cho [Escherichia coli O157:H7 str. EC4501] gi|189372076|gb|EDU90492.1| excinuclease cho [Escherichia coli O157:H7 str. EC869] gi|189377548|gb|EDU95964.1| excinuclease cho [Escherichia coli O157:H7 str. EC508] gi|192926550|gb|EDV81181.1| excinuclease cho [Escherichia coli E22] gi|194413376|gb|EDX29659.1| excinuclease cho [Escherichia coli B171] gi|209768628|gb|ACI82626.1| putative excinuclease subunit [Escherichia coli] gi|209768630|gb|ACI82627.1| putative excinuclease subunit [Escherichia coli] gi|209768632|gb|ACI82628.1| putative excinuclease subunit [Escherichia coli] gi|209768634|gb|ACI82629.1| putative excinuclease subunit [Escherichia coli] gi|217318055|gb|EEC26482.1| excinuclease cho [Escherichia coli O157:H7 str. TW14588] gi|218352031|emb|CAU97768.1| endonuclease of nucleotide excision repair [Escherichia coli 55989] gi|257759238|dbj|BAI30735.1| endonuclease [Escherichia coli O103:H2 str. 12009] gi|290762793|gb|ADD56754.1| Excinuclease cho [Escherichia coli O55:H7 str. CB9615] gi|291322943|gb|EFE62371.1| hypothetical protein ECCG_00261 [Escherichia coli B088] gi|320641589|gb|EFX10977.1| nucleotide excision repair endonuclease [Escherichia coli O157:H7 str. G5101] gi|320646948|gb|EFX15781.1| nucleotide excision repair endonuclease [Escherichia coli O157:H- str. 493-89] gi|320652230|gb|EFX20528.1| nucleotide excision repair endonuclease [Escherichia coli O157:H- str. H 2687] gi|320657831|gb|EFX25593.1| nucleotide excision repair endonuclease [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658406|gb|EFX26100.1| nucleotide excision repair endonuclease [Escherichia coli O55:H7 str. USDA 5905] gi|320668303|gb|EFX35130.1| nucleotide excision repair endonuclease [Escherichia coli O157:H7 str. LSU-61] gi|323948132|gb|EGB44122.1| GIY-YIG catalytic domain-containing protein [Escherichia coli H120] gi|324119226|gb|EGC13114.1| GIY-G catalytic domain-containing protein [Escherichia coli E1167] gi|332101458|gb|EGJ04804.1| nucleotide excision repair endonuclease [Shigella sp. D9] Length = 295 Score = 141 bits (354), Expect = 4e-31, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 97/254 (38%), Gaps = 19/254 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 DLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + + +K + Sbjct: 86 AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A + + S+ L R R C +KRC+G C G+ S E+ Sbjct: 142 LFGLFANRRAALQALQSIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + + ++ + L A ++ E H + N + Sbjct: 202 HALRLRQSLERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEAT 255 Query: 240 NRMDCFSLYHNKNL 253 + + + + Sbjct: 256 TLIRTPAGFDHDGY 269 >gi|331653142|ref|ZP_08354147.1| excinuclease cho [Escherichia coli M718] gi|331049240|gb|EGI21312.1| excinuclease cho [Escherichia coli M718] Length = 295 Score = 141 bits (354), Expect = 4e-31, Method: Composition-based stats. Identities = 53/254 (20%), Positives = 97/254 (38%), Gaps = 19/254 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 DLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + + +K + Sbjct: 86 AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSQAPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A + + ++ L R R C +KRC+G C G+ S E+ Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + + ++ + L A ++ E H + N + Sbjct: 202 HALRLRQSLERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEAT 255 Query: 240 NRMDCFSLYHNKNL 253 + + + + Sbjct: 256 TLIRTPAGFDHDGY 269 >gi|323968509|gb|EGB63915.1| GIY-G catalytic domain-containing protein [Escherichia coli M863] gi|327252858|gb|EGE64512.1| hypothetical protein ECSTEC7V_2103 [Escherichia coli STEC_7v] Length = 295 Score = 141 bits (354), Expect = 4e-31, Method: Composition-based stats. Identities = 53/254 (20%), Positives = 95/254 (37%), Gaps = 19/254 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 DLPTRPGVYLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + + +K + Sbjct: 86 AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A + + ++ L R R C +KRC+G C G+ S + Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHDD 201 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + + +A L A ++ E H + N + Sbjct: 202 HALRLRQALARLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEAT 255 Query: 240 NRMDCFSLYHNKNL 253 + + + + Sbjct: 256 MLIRTPAGFDHDGY 269 >gi|325103921|ref|YP_004273575.1| DNA polymerase III, epsilon subunit [Pedobacter saltans DSM 12145] gi|324972769|gb|ADY51753.1| DNA polymerase III, epsilon subunit [Pedobacter saltans DSM 12145] Length = 459 Score = 141 bits (354), Expect = 4e-31, Method: Composition-based stats. Identities = 51/154 (33%), Positives = 74/154 (48%), Gaps = 3/154 (1%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 EQ+PE PGVY D G+++YVGKA N++KR+ S+ NN + R I I++I F T Sbjct: 197 EQLPERPGVYFFRDKHGKLIYVGKAINIRKRVHSHFTGNNTSQRRQLFIKNISHIDFEET 256 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRD-DKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 TE+ ALL E + IK+ P +N L+ + F I D L R + + Sbjct: 257 GTELMALLKECHYIKQHWPEYNRALKQYEPKFGLIDYVDNSGFIRLCICRLPVGSRALCY 316 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT 156 F +V + + L F L S +R R Sbjct: 317 --FDNVVEATQCLLGLIDRFGLDSRLCVFYRDRK 348 >gi|30062992|ref|NP_837163.1| nucleotide excision repair endonuclease [Shigella flexneri 2a str. 2457T] gi|56479913|ref|NP_707370.2| nucleotide excision repair endonuclease [Shigella flexneri 2a str. 301] gi|29429141|sp|P59361|CHO_SHIFL RecName: Full=Excinuclease cho; AltName: Full=Endonuclease cho; AltName: Full=UvrC homolog protein gi|30041241|gb|AAP16970.1| putative excinuclease subunit [Shigella flexneri 2a str. 2457T] gi|56383464|gb|AAN43077.2| putative excinuclease subunit [Shigella flexneri 2a str. 301] gi|281600896|gb|ADA73880.1| Excinuclease cho [Shigella flexneri 2002017] gi|313649234|gb|EFS13668.1| excinuclease cho [Shigella flexneri 2a str. 2457T] gi|332762516|gb|EGJ92781.1| hypothetical protein SF434370_0102 [Shigella flexneri 4343-70] Length = 295 Score = 141 bits (354), Expect = 4e-31, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 97/254 (38%), Gaps = 19/254 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 DLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + + +K + Sbjct: 86 AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A + + S+ L R R C +KRC+G C G+ S E+ Sbjct: 142 LFGLFANRRAALQALQSIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + + ++ + L A ++ E H + N + Sbjct: 202 HALRLRQSLERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEAT 255 Query: 240 NRMDCFSLYHNKNL 253 + + + + Sbjct: 256 TLIRTPAGFDHDGY 269 >gi|170683911|ref|YP_001743508.1| nucleotide excision repair endonuclease [Escherichia coli SMS-3-5] gi|170521629|gb|ACB19807.1| excinuclease cho [Escherichia coli SMS-3-5] Length = 295 Score = 141 bits (354), Expect = 4e-31, Method: Composition-based stats. Identities = 52/254 (20%), Positives = 96/254 (37%), Gaps = 19/254 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 DLPTRPGVYLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + + +K + Sbjct: 86 AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A + + ++ L R R C +KRC+G C G+ S + Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHDD 201 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + + ++ + L A ++ E H + N + Sbjct: 202 HALRLRQSLERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEAT 255 Query: 240 NRMDCFSLYHNKNL 253 + + + + Sbjct: 256 MLIRTPAGFDHDGY 269 >gi|218554307|ref|YP_002387220.1| nucleotide excision repair endonuclease [Escherichia coli IAI1] gi|331677618|ref|ZP_08378293.1| excinuclease cho [Escherichia coli H591] gi|218361075|emb|CAQ98658.1| endonuclease of nucleotide excision repair [Escherichia coli IAI1] gi|331074078|gb|EGI45398.1| excinuclease cho [Escherichia coli H591] Length = 295 Score = 141 bits (354), Expect = 5e-31, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 97/254 (38%), Gaps = 19/254 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 DLPTRPGVYLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + + +K + Sbjct: 86 AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A + + S+ L R R C +KRC+G C G+ S E+ Sbjct: 142 LFGLFANRRAALQALQSIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + + ++ + L A ++ E H + N + Sbjct: 202 HALRLRQSLERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEAT 255 Query: 240 NRMDCFSLYHNKNL 253 + + + + Sbjct: 256 TLIRTPAGFDHDGY 269 >gi|256424475|ref|YP_003125128.1| DNA polymerase III subunit epsilon [Chitinophaga pinensis DSM 2588] gi|256039383|gb|ACU62927.1| DNA polymerase III, epsilon subunit [Chitinophaga pinensis DSM 2588] Length = 456 Score = 141 bits (354), Expect = 5e-31, Method: Composition-based stats. Identities = 50/192 (26%), Positives = 78/192 (40%), Gaps = 12/192 (6%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PGVY D G+V+YVGKA N++KR+ S+ N+ + + I +I VT T Sbjct: 194 LPGTPGVYYFHDQKGKVVYVGKAKNIRKRVNSHFTGNSAGRKRQEFLRNIYSISHEVTGT 253 Query: 66 EVEALLLEANMIKRLKPRFN-----ILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 E+ A +LE+ IKRL P +N I + + + D+ L + + Sbjct: 254 ELMAHILESVEIKRLWPVYNYSQKYIEFK----YGFYCFEDQEGYLRLVI--EKRRKYSA 307 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 F + + + L R F L + C C G C + +SE Y Sbjct: 308 PLHSFPLLVQGHQMLRGLIREFDLCPRL-CFLQKGQGACSPIPDHTCRGACEKKETSETY 366 Query: 181 MEFVHEAKKFLS 192 V A + Sbjct: 367 NLRVKAAIIHMQ 378 >gi|332090670|gb|EGI95765.1| hypothetical protein SB521682_1925 [Shigella boydii 5216-82] Length = 295 Score = 141 bits (354), Expect = 5e-31, Method: Composition-based stats. Identities = 53/254 (20%), Positives = 97/254 (38%), Gaps = 19/254 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 DLPSRPGVYLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + + +K + Sbjct: 86 AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A + + ++ L R R C +KRC+G C G+ S E+ Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + + ++ + L A ++ E H + N + Sbjct: 202 HALRLRQSLERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEDAT 255 Query: 240 NRMDCFSLYHNKNL 253 + + + + Sbjct: 256 TLIRTPAGFDHDGY 269 >gi|281178812|dbj|BAI55142.1| excinuclease [Escherichia coli SE15] Length = 295 Score = 141 bits (354), Expect = 5e-31, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 96/254 (37%), Gaps = 19/254 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 DLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + + +K + Sbjct: 86 AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRASN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A + + ++ L R R C +KRC+G C G+ S E+ Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + + +A + L A ++ E H + N Sbjct: 202 HALRLRQALERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLKEAT 255 Query: 240 NRMDCFSLYHNKNL 253 + + + + Sbjct: 256 TLIRAPAGFDHDGY 269 >gi|237731248|ref|ZP_04561729.1| nucleotide excision repair endonuclease [Citrobacter sp. 30_2] gi|226906787|gb|EEH92705.1| nucleotide excision repair endonuclease [Citrobacter sp. 30_2] Length = 295 Score = 141 bits (354), Expect = 5e-31, Method: Composition-based stats. Identities = 58/251 (23%), Positives = 97/251 (38%), Gaps = 15/251 (5%) Query: 6 MPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY + LY+GK+ N++ R+ +++ + + M+ Q I + T Sbjct: 31 LPTAPGVYLFHSESDTMPLYIGKSVNIRSRVLAHLRTADE----AAMLRQAKRISWICTA 86 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG-SYFG 123 E+ ALLLEA +IK +P FN LR ++ + +TD+ + RD + FG Sbjct: 87 GEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLTDRTV--QVVYARDIDFSHAPNLFG 144 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 FA+ A + + SL L R R C +KRC+G C G+ S E + Sbjct: 145 LFANRRAALQALQSLADEQQLCYGLLGLEPLSRGRVCFRSALKRCAGACCGKESHEAHHL 204 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242 + A + + I A + E H + D Sbjct: 205 RLLAALERVRVICWPWSNAI------ALQETGAEMTQYHIINNWLWLGAVSTLDEAATLA 258 Query: 243 DCFSLYHNKNL 253 + + + Sbjct: 259 RMPAGFDHDGY 269 >gi|323978077|gb|EGB73163.1| GIY-G catalytic domain-containing protein [Escherichia coli TW10509] Length = 295 Score = 141 bits (354), Expect = 5e-31, Method: Composition-based stats. Identities = 53/254 (20%), Positives = 96/254 (37%), Gaps = 19/254 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 DLPTRPGVYLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + + +K + Sbjct: 86 AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A + + ++ L R R C +KRC+G C G+ S + Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESPDD 201 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + + +A + L A ++ E H + N + Sbjct: 202 HALRLRQALERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEAT 255 Query: 240 NRMDCFSLYHNKNL 253 + + + + Sbjct: 256 MLIRTPAGFDHDGY 269 >gi|306815008|ref|ZP_07449164.1| nucleotide excision repair endonuclease [Escherichia coli NC101] gi|305851656|gb|EFM52109.1| nucleotide excision repair endonuclease [Escherichia coli NC101] Length = 295 Score = 140 bits (353), Expect = 6e-31, Method: Composition-based stats. Identities = 52/254 (20%), Positives = 95/254 (37%), Gaps = 19/254 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 DLPTRPGVYLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + + +K + Sbjct: 86 AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A + + ++ L R R C +KRC+G C G+ S + Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHDA 201 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + ++ + L A ++ E H + N + Sbjct: 202 HALRFRQSLERLRVVCWPW------KGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEAT 255 Query: 240 NRMDCFSLYHNKNL 253 + + + + Sbjct: 256 MLIRTPAGFDHDGY 269 >gi|218699692|ref|YP_002407321.1| nucleotide excision repair endonuclease [Escherichia coli IAI39] gi|218369678|emb|CAR17447.1| endonuclease of nucleotide excision repair [Escherichia coli IAI39] Length = 295 Score = 140 bits (353), Expect = 6e-31, Method: Composition-based stats. Identities = 53/254 (20%), Positives = 96/254 (37%), Gaps = 19/254 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 DLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + + +K + Sbjct: 86 AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A + + S+ L R R C +KRC+G C G+ S + Sbjct: 142 LFGLFANRRAALQALQSIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHDD 201 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + + ++ + L A ++ E H + N + Sbjct: 202 HALRLRQSLERLRVVCWPW------KGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEAT 255 Query: 240 NRMDCFSLYHNKNL 253 + + + + Sbjct: 256 MLIRTPAGFDHDGY 269 >gi|26247994|ref|NP_754034.1| nucleotide excision repair endonuclease [Escherichia coli CFT073] gi|91210956|ref|YP_540942.1| nucleotide excision repair endonuclease [Escherichia coli UTI89] gi|117623913|ref|YP_852826.1| nucleotide excision repair endonuclease [Escherichia coli APEC O1] gi|218558609|ref|YP_002391522.1| nucleotide excision repair endonuclease [Escherichia coli S88] gi|218689682|ref|YP_002397894.1| nucleotide excision repair endonuclease [Escherichia coli ED1a] gi|237705691|ref|ZP_04536172.1| nucleotide excision repair endonuclease [Escherichia sp. 3_2_53FAA] gi|331647233|ref|ZP_08348327.1| excinuclease cho [Escherichia coli M605] gi|29427411|sp|P59439|CHO_ECOL6 RecName: Full=Excinuclease cho; AltName: Full=Endonuclease cho; AltName: Full=UvrC homolog protein gi|26108397|gb|AAN80599.1|AE016761_174 Hypothetical protein ydjQ [Escherichia coli CFT073] gi|91072530|gb|ABE07411.1| hypothetical protein YdjQ [Escherichia coli UTI89] gi|115513037|gb|ABJ01112.1| endonuclease of nucleotide excision repair [Escherichia coli APEC O1] gi|218365378|emb|CAR03101.1| endonuclease of nucleotide excision repair [Escherichia coli S88] gi|218427246|emb|CAR08136.2| endonuclease of nucleotide excision repair [Escherichia coli ED1a] gi|222033494|emb|CAP76235.1| excinuclease cho [Escherichia coli LF82] gi|226900448|gb|EEH86707.1| nucleotide excision repair endonuclease [Escherichia sp. 3_2_53FAA] gi|294489710|gb|ADE88466.1| excinuclease cho [Escherichia coli IHE3034] gi|307553760|gb|ADN46535.1| excinuclease Cho [Escherichia coli ABU 83972] gi|307626774|gb|ADN71078.1| nucleotide excision repair endonuclease [Escherichia coli UM146] gi|312946341|gb|ADR27168.1| nucleotide excision repair endonuclease [Escherichia coli O83:H1 str. NRG 857C] gi|323952247|gb|EGB48120.1| GIY-G catalytic domain-containing protein [Escherichia coli H252] gi|323956567|gb|EGB52306.1| GIY-G catalytic domain-containing protein [Escherichia coli H263] gi|331044016|gb|EGI16152.1| excinuclease cho [Escherichia coli M605] Length = 295 Score = 140 bits (353), Expect = 6e-31, Method: Composition-based stats. Identities = 52/254 (20%), Positives = 95/254 (37%), Gaps = 19/254 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 DLPTRPGVYLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + + +K + Sbjct: 86 AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A + + ++ L R R C +KRC+G C G+ S + Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHDD 201 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + + ++ + L A ++ E H + N Sbjct: 202 HALRLRQSLERLRVVCWPW------KGAVALKEQHPEMTQYHIIQNWLWLGAVNSLKEAT 255 Query: 240 NRMDCFSLYHNKNL 253 + + + + Sbjct: 256 TLIRAPAGFDHDGY 269 >gi|194291379|ref|YP_002007286.1| DNA polymerase iii, epsilon subunit + giy-yig endonuclease (modular protein) [Cupriavidus taiwanensis LMG 19424] gi|193225283|emb|CAQ71225.1| DNA polymerase III, epsilon subunit + GIY-YIG endonuclease (modular protein) [Cupriavidus taiwanensis LMG 19424] Length = 532 Score = 140 bits (353), Expect = 6e-31, Method: Composition-based stats. Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 5/183 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + E +P PGVY LYVGK+ +L++RI ++ + + + + + + Sbjct: 220 ALEDVPASPGVYIFYGDQDVPLYVGKSVHLRQRIGAHFSGDYRYGKDMRLARLVRRVEWR 279 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKS-FPYILITDKHKIPALYKHRDSSTIQGS 120 T E ALLLEA ++K ++P N +LR + + + + + +P L RD+ + Sbjct: 280 ETGGETGALLLEAQLVKAMQPVHNQMLRRNTRLYAW-ELPQQLPVPRLRSDRDTDFCRHR 338 Query: 121 -YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISS 177 FG F S A E + +L L S+ + R PC Q+ RC+G C G S Sbjct: 339 DLFGVFGSRGAAEARLRALAEEHGLCMATLSLEKTTRRGSPCFARQVHRCAGACVGAESP 398 Query: 178 EKY 180 ++ Sbjct: 399 REH 401 >gi|146311359|ref|YP_001176433.1| nucleotide excision repair endonuclease [Enterobacter sp. 638] gi|145318235|gb|ABP60382.1| Excinuclease Cho [Enterobacter sp. 638] Length = 292 Score = 140 bits (352), Expect = 7e-31, Method: Composition-based stats. Identities = 54/181 (29%), Positives = 85/181 (46%), Gaps = 9/181 (4%) Query: 3 SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + Sbjct: 28 LEALPKQPGVYFFHGESDAMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRITWM 83 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG-S 120 T E+ ALLLEA +IK +P FN LR ++ + IT P + RD Sbjct: 84 QTAGELGALLLEARLIKEQQPLFNKRLRRNRQLCSLQITGGK--PQVVYARDVDFSHAPG 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179 G FA+ A + + +L L + R R C F +KRC+G C G+ S E+ Sbjct: 142 LHGLFANRRAALQALQTLADAQQLCYGVLGLESLTRGRACFRFALKRCAGACCGKESIEE 201 Query: 180 Y 180 + Sbjct: 202 H 202 >gi|289677234|ref|ZP_06498124.1| excinuclease ABC subunit C [Pseudomonas syringae pv. syringae FF5] Length = 111 Score = 140 bits (352), Expect = 8e-31, Method: Composition-based stats. Identities = 49/112 (43%), Positives = 67/112 (59%), Gaps = 3/112 (2%) Query: 458 YSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG-E 516 PDV+++DGGKGQ+S A+ VL +L V + I ++ +AKG R AG E ++ Sbjct: 1 AGEGKLPDVLLVDGGKGQMSMARDVLNELQVPDLI-LLGVAKGTTRKAGFETLYLNDSAH 59 Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLR 567 L P L+ IQ++RDEAHRFAIT HR RR K S L+ + G+GP R Sbjct: 60 EFTLPGDSPALHLIQQIRDEAHRFAITGHRARRGKTRRTSTLEGVAGVGPPR 111 >gi|194433473|ref|ZP_03065751.1| excinuclease cho [Shigella dysenteriae 1012] gi|194418236|gb|EDX34327.1| excinuclease cho [Shigella dysenteriae 1012] Length = 295 Score = 140 bits (352), Expect = 8e-31, Method: Composition-based stats. Identities = 53/254 (20%), Positives = 97/254 (38%), Gaps = 19/254 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 DLPTRPGVYLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----ADMLRQSRRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + + +K + Sbjct: 86 AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A + + ++ L R R C +KRC+G C G+ S E+ Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + + ++ + L A ++ E H + N + Sbjct: 202 HALRLRQSLERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEDAT 255 Query: 240 NRMDCFSLYHNKNL 253 + + + + Sbjct: 256 TLIRTPAGFDHDGY 269 >gi|215486958|ref|YP_002329389.1| nucleotide excision repair endonuclease [Escherichia coli O127:H6 str. E2348/69] gi|215265030|emb|CAS09417.1| endonuclease of nucleotide excision repair [Escherichia coli O127:H6 str. E2348/69] Length = 295 Score = 139 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 97/254 (38%), Gaps = 19/254 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 DLPTRPGVYLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + + +K + Sbjct: 86 AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A + + ++ L R R C +KRC+G C G+ S E+ Sbjct: 142 LFGLFATRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + + +A + L A ++ E H + N + Sbjct: 202 HARRLRQALERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEAT 255 Query: 240 NRMDCFSLYHNKNL 253 + + + + Sbjct: 256 TLIRTPAGFDHDGY 269 >gi|161503590|ref|YP_001570702.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864937|gb|ABX21560.1| hypothetical protein SARI_01669 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 302 Score = 139 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 13/182 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 ++P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 39 ELPALPGVYVFHSESDTLPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICT 94 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + ++++ + S Sbjct: 95 AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 150 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A +++ SL L +R R C F +KRC+G C G+ S + Sbjct: 151 LFGLFANRRAALQSLQSLADEQKLCYGLLGLEPLNRGRACFRFALKRCAGACCGQESPQA 210 Query: 180 YM 181 + Sbjct: 211 HF 212 >gi|197250160|ref|YP_002146727.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197213863|gb|ACH51260.1| GIY-YIG catalytic domain protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 293 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 13/182 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 ++P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 ELPALPGVYVFHSESDTLPLYIGKSVNIRSRVLSHLRTPDE----ATMLRQARRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + ++++ + S Sbjct: 86 AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A +++ +L L + R R C F +KRC+G C G+ + + Sbjct: 142 LFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRACFRFALKRCAGACCGQETPQA 201 Query: 180 YM 181 + Sbjct: 202 HF 203 >gi|90415683|ref|ZP_01223617.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium HTCC2207] gi|90333006|gb|EAS48176.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium HTCC2207] Length = 528 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 56/202 (27%), Positives = 89/202 (44%), Gaps = 11/202 (5%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 +++P GVY D G +LYVGK+ +++ R+ S+ ++ + + +++ +I F Sbjct: 212 DIKKLPASAGVYYFYDANGALLYVGKSIHIRNRVMSHFSQDHSNPKDLQINNKLAHIDFE 271 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKS-FPYILITDKHKIPALYK--HRDSSTIQ 118 T +++ A + E+N IK L P +N LR K + Y D++ + S Sbjct: 272 KTPSDLGAQIRESNQIKALYPLYNRRLRKTKKLYQYRCDEDRNGYQRIAIEAVELDSDSA 331 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLR--------SCADSVFRHRTRPCLLFQIKRCSGP 170 FG F S K I L +FL S A + +PC Q+K+C G Sbjct: 332 DERFGLFRSPRQASKQIEKLADHYFLCHKLLGLESSTATTSVATNQKPCFRAQLKKCFGA 391 Query: 171 CTGEISSEKYMEFVHEAKKFLS 192 C G S E Y E V A K Sbjct: 392 CHGAESPENYNERVSAALKTYQ 413 >gi|110641861|ref|YP_669591.1| nucleotide excision repair endonuclease [Escherichia coli 536] gi|191171622|ref|ZP_03033169.1| excinuclease cho [Escherichia coli F11] gi|110343453|gb|ABG69690.1| hypothetical protein YdjQ [Escherichia coli 536] gi|190907952|gb|EDV67544.1| excinuclease cho [Escherichia coli F11] Length = 295 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 51/254 (20%), Positives = 94/254 (37%), Gaps = 19/254 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 DLPTRPGVYLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + + +K + Sbjct: 86 AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A + + ++ L R C +KRC+G C G+ S + Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSHGRACFRSALKRCAGACCGKESHDD 201 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + + ++ + L A ++ E H + N Sbjct: 202 HALRLRQSLERLRVVCWPW------KGAVALKEQHPEMTQYHIIQNWLWLGAVNSLKEAT 255 Query: 240 NRMDCFSLYHNKNL 253 + + + + Sbjct: 256 TLIRAPAGFDHDGY 269 >gi|213622036|ref|ZP_03374819.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 280 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 13/182 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 EAPALPGVYIFHSESDTLPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQARRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + ++++ + S Sbjct: 86 AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A +++ +L L + R R C F +KRC+G C G+ + + Sbjct: 142 LFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRACFRFALKRCAGACCGQETPQA 201 Query: 180 YM 181 + Sbjct: 202 HF 203 >gi|16760586|ref|NP_456203.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141653|ref|NP_804995.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213162967|ref|ZP_03348677.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|238910873|ref|ZP_04654710.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|16502882|emb|CAD02045.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137281|gb|AAO68844.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|322655747|gb|EFY52049.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|323257183|gb|EGA40886.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] Length = 302 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 13/182 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 39 EAPALPGVYIFHSESDTLPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQARRISWICT 94 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + ++++ + S Sbjct: 95 AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 150 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A +++ +L L + R R C F +KRC+G C G+ + + Sbjct: 151 LFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRACFRFALKRCAGACCGQETPQA 210 Query: 180 YM 181 + Sbjct: 211 HF 212 >gi|213024849|ref|ZP_03339296.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 89 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 1/84 (1%) Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKM 580 P L+ IQ +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ Sbjct: 1 PDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQG 60 Query: 581 ISRSSPETLASIEGISKKIACKIY 604 + +S E +A + GIS+ +A KI+ Sbjct: 61 LRNASVEEIAKVPGISQGLAEKIF 84 >gi|194469267|ref|ZP_03075251.1| excinuclease cho [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736134|ref|YP_002114328.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195873223|ref|ZP_02697225.2| GIY-YIG catalytic domain protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197301132|ref|ZP_02664035.2| GIY-YIG catalytic domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204927461|ref|ZP_03218662.1| GIY-YIG catalytic domain protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205358673|ref|ZP_02658284.2| GIY-YIG catalytic domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205360706|ref|ZP_02685847.2| GIY-YIG catalytic domain protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|213028192|ref|ZP_03342639.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213427492|ref|ZP_03360242.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213852611|ref|ZP_03382143.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|20178217|sp|Q8Z6G5|CHO_SALTI RecName: Full=Excinuclease cho; AltName: Full=Endonuclease cho; AltName: Full=UvrC homolog protein gi|194455631|gb|EDX44470.1| excinuclease cho [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711636|gb|ACF90857.1| excinuclease cho [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195634227|gb|EDX52579.1| GIY-YIG catalytic domain protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197288257|gb|EDY27642.1| GIY-YIG catalytic domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204322803|gb|EDZ07999.1| GIY-YIG catalytic domain protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205332752|gb|EDZ19516.1| GIY-YIG catalytic domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205347602|gb|EDZ34233.1| GIY-YIG catalytic domain protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|322616697|gb|EFY13606.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620045|gb|EFY16918.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622355|gb|EFY19200.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627879|gb|EFY24669.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633023|gb|EFY29766.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636731|gb|EFY33434.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641243|gb|EFY37884.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645232|gb|EFY41761.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650174|gb|EFY46588.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322660073|gb|EFY56312.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665360|gb|EFY61548.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669653|gb|EFY65800.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673544|gb|EFY69646.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677470|gb|EFY73534.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679865|gb|EFY75904.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687337|gb|EFY83309.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192455|gb|EFZ77685.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198690|gb|EFZ83791.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204118|gb|EFZ89132.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208737|gb|EFZ93675.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210250|gb|EFZ95149.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217712|gb|EGA02427.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220267|gb|EGA04722.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223633|gb|EGA07945.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229515|gb|EGA13638.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232738|gb|EGA16834.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240223|gb|EGA24267.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242789|gb|EGA26810.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249105|gb|EGA33024.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323263414|gb|EGA46945.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267091|gb|EGA50576.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271585|gb|EGA55006.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 293 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 13/182 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 EAPALPGVYIFHSESDTLPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQARRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + ++++ + S Sbjct: 86 AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A +++ +L L + R R C F +KRC+G C G+ + + Sbjct: 142 LFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRACFRFALKRCAGACCGQETPQA 201 Query: 180 YM 181 + Sbjct: 202 HF 203 >gi|194448654|ref|YP_002045316.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205359344|ref|ZP_02669350.2| GIY-YIG catalytic domain protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194406958|gb|ACF67177.1| excinuclease cho [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205336710|gb|EDZ23474.1| GIY-YIG catalytic domain protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 293 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 13/182 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 EAPALPGVYIFHSESDTLPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQARRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + ++++ + S Sbjct: 86 AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A +++ +L L + R R C F +KRC+G C G+ + + Sbjct: 142 LFGLFANRRAALQSLQNLADEQKLCYSLLGLEPVSRGRACFRFALKRCAGACCGQETPQA 201 Query: 180 YM 181 + Sbjct: 202 HF 203 >gi|326623563|gb|EGE29908.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 302 Score = 138 bits (348), Expect = 3e-30, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 13/182 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 ++P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 39 ELPALPGVYVFHSESDTLPLYIGKSVNIRSRVLSHLRTPDE----ATMLRQARRISWICT 94 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + ++++ + S Sbjct: 95 AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 150 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A +++ +L L + R R C F +KRC+G C G+ + + Sbjct: 151 LFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRSCFRFALKRCAGACCGQETPQA 210 Query: 180 YM 181 + Sbjct: 211 HF 212 >gi|194443792|ref|YP_002040568.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194402455|gb|ACF62677.1| excinuclease cho [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 293 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 13/182 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 ++P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 ELPAFPGVYVFYSESDTLPLYIGKSVNIRSRVLSHLRTPDE----ATMLRQARRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + ++++ + S Sbjct: 86 AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A +++ +L L + R R C F +KRC+G C G+ + + Sbjct: 142 LFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRACFRFALKRCAGACCGQETPQA 201 Query: 180 YM 181 + Sbjct: 202 HF 203 >gi|198245824|ref|YP_002215816.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197940340|gb|ACH77673.1| GIY-YIG catalytic domain protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 293 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 13/182 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 ++P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 ELPALPGVYVFHSESDTLPLYIGKSVNIRSRVLSHLRTPDE----ATMLRQARRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + ++++ + S Sbjct: 86 AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A +++ +L L + R R C F +KRC+G C G+ + + Sbjct: 142 LFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRSCFRFALKRCAGACCGQETPQA 201 Query: 180 YM 181 + Sbjct: 202 HF 203 >gi|16764660|ref|NP_460275.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62179900|ref|YP_216317.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|197262254|ref|ZP_03162328.1| excinuclease cho [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|16419827|gb|AAL20234.1| putative nuclease subunit of the excinuclease complex [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62127533|gb|AAX65236.1| putative nuclease subunit of the excinuclease complex [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|197240509|gb|EDY23129.1| excinuclease cho [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|261246518|emb|CBG24328.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993183|gb|ACY88068.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157846|emb|CBW17340.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|322714367|gb|EFZ05938.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323129580|gb|ADX17010.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988197|gb|AEF07180.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 302 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 13/182 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 39 EAPALPGVYIFHSESDTLPLYIGKSVNIRSRVLSHLRTPDE----ATMLRQARRISWICT 94 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + ++++ + S Sbjct: 95 AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 150 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A +++ +L L + R R C F +KRC+G C G+ + + Sbjct: 151 LFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRACFRFALKRCAGACCGQETPQA 210 Query: 180 YM 181 + Sbjct: 211 HF 212 >gi|188533988|ref|YP_001907785.1| nucleotide excision repair endonuclease [Erwinia tasmaniensis Et1/99] gi|188029030|emb|CAO96898.1| Excinuclease cho [Erwinia tasmaniensis Et1/99] Length = 289 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 9/183 (4%) Query: 3 SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PGVY + LY+GK+ N++ R+ S++ + + M+ Q I F Sbjct: 28 LESLPKLPGVYVFHGESETMPLYIGKSVNIRSRVLSHLRTADE----ARMLRQATRISFI 83 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGS 120 T E+ ALLLEA MIK +P FN LR ++ + IT P + +D + Sbjct: 84 PTAGELGALLLEAQMIKLQQPLFNKRLRKNRQLCSLQITAGT--PQVVYAKDVDFSSTAG 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEK 179 +G +A A +T+ + L + + R C F +KRC+G C G S + Sbjct: 142 LYGLYAHRRAALETLQKIADEQRLCYPLLGLEKLRSGGACFRFALKRCAGACCGNESEHE 201 Query: 180 YME 182 + + Sbjct: 202 HQQ 204 >gi|116694719|ref|YP_728930.1| exconuclease [Ralstonia eutropha H16] gi|113529218|emb|CAJ95565.1| Exconuclease [Ralstonia eutropha H16] Length = 528 Score = 137 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 5/175 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + E +P PGVY LY+GK+ +L++RI ++ + + + + + + Sbjct: 217 ALEDVPAAPGVYIFYGDQDVPLYIGKSVHLRQRIGAHFSGDYRYGKDMRLARLVRRVEWR 276 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKS-FPYILITDKHKIPALYKHRDSSTIQGS 120 T E ALLLEA ++K ++P N LLR + + + + + +P L RD+ + Sbjct: 277 ETGGETGALLLEARLVKAMQPVHNQLLRRNARLYAW-ELPQQLPVPRLRSDRDTDFCRHR 335 Query: 121 -YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCT 172 FG F S A E + +L + L S+ + R PC Q+ RC+G C Sbjct: 336 DLFGVFGSRGAAEARLRALAQEHGLCLATLSLEKTTRRGSPCFARQVHRCAGACV 390 >gi|283785035|ref|YP_003364900.1| excinuclease Cho [Citrobacter rodentium ICC168] gi|282948489|emb|CBG88078.1| excinuclease Cho [Citrobacter rodentium ICC168] Length = 295 Score = 137 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 49/181 (27%), Positives = 81/181 (44%), Gaps = 9/181 (4%) Query: 3 SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + Sbjct: 28 LEALPSVPGVYLFHGESEAMPLYIGKSVNIRSRVLSHLRTADE----AAMLRQSRRISWI 83 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG-S 120 T E+ ALLLEA +IK +P FN LR ++ + + + + R+ + Sbjct: 84 CTAGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALRLANGQV--EVVYAREVDFSHAPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A + + +L L R R C +KRC+G C G S + Sbjct: 142 LFGLFANRRAALQALQTLADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGRESPDD 201 Query: 180 Y 180 + Sbjct: 202 H 202 >gi|161614288|ref|YP_001588253.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|205357735|ref|ZP_02572972.2| GIY-YIG catalytic domain protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|20178223|sp|Q8ZPU6|CHO_SALTY RecName: Full=Excinuclease cho; AltName: Full=Endonuclease cho; AltName: Full=UvrC homolog protein gi|161363652|gb|ABX67420.1| hypothetical protein SPAB_02033 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|205329729|gb|EDZ16493.1| GIY-YIG catalytic domain protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|312912295|dbj|BAJ36269.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223937|gb|EFX49000.1| Excinuclease cho excinuclease ABC alternative C subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 293 Score = 137 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 13/182 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 EAPALPGVYIFHSESDTLPLYIGKSVNIRSRVLSHLRTPDE----ATMLRQARRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + ++++ + S Sbjct: 86 AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A +++ +L L + R R C F +KRC+G C G+ + + Sbjct: 142 LFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRACFRFALKRCAGACCGQETPQA 201 Query: 180 YM 181 + Sbjct: 202 HF 203 >gi|291085463|ref|ZP_06571074.1| excinuclease cho [Citrobacter youngae ATCC 29220] gi|291071063|gb|EFE09172.1| excinuclease cho [Citrobacter youngae ATCC 29220] Length = 262 Score = 137 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 58/247 (23%), Positives = 96/247 (38%), Gaps = 15/247 (6%) Query: 10 PGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68 PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T E+ Sbjct: 2 PGVYLFHSESDTLPLYIGKSVNIRSRVLSHLRTTDE----AAMLRQSKRISWICTAGEIG 57 Query: 69 ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG-SYFGPFAS 127 ALLLEA +IK +P FN LR ++ + +T + + RD + FG FA+ Sbjct: 58 ALLLEARLIKEQQPLFNKRLRRNRQLCALQLT--EQTVQVVYSRDIDFSHAPNLFGLFAN 115 Query: 128 VDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186 A +T+ SL L R R C +KRC+G C G+ S + + + E Sbjct: 116 RRAALQTLQSLADEQQLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESPQAHHARLLE 175 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFS 246 A + + I A + E H + D + Sbjct: 176 ALERVRVICWPWNSAI------ALQETRAEMTQYHIINNWLWLGAVSTLDEAATLARMPA 229 Query: 247 LYHNKNL 253 + + Sbjct: 230 GFDHDGY 236 >gi|168702411|ref|ZP_02734688.1| exinuclease ABC subunit C [Gemmata obscuriglobus UQM 2246] Length = 404 Score = 137 bits (346), Expect = 5e-30, Method: Composition-based stats. Identities = 80/316 (25%), Positives = 131/316 (41%), Gaps = 26/316 (8%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + + P+ PGVY MLD GR++YVGKA NL+ R+ Y N+ + +I Q + + Sbjct: 51 AKKNAPKVPGVYGMLDSRGRLIYVGKAKNLRARLLCYFRENSRDPKAGKIIEQTKRLVWE 110 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFP------YILITDKHKIPALYKHRDSS 115 E+ ALL E +I+RL+PR+N+L P YI + +Y + Sbjct: 111 QCGDELAALLRELELIQRLRPRYNVL-----GVPGFQRHHYICVGKS-PGAHVYVTAAPT 164 Query: 116 TIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADS-----------VFRHRTRPCLLFQI 164 + +GPF E L F LR C + R+ CL F++ Sbjct: 165 GKEQGVYGPFVKRHRSEDAARRLNDWFKLRDCPQTVPLTFAEQGALFDPARSAKCLRFEL 224 Query: 165 KRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR 224 C+GPC G + + Y AK FL G N ++ + + M A + +E A RD+ Sbjct: 225 GTCAGPCVGACTRQDYAAGARAAKAFLDGRNRSILQTLQEQMGVAAEELQFEKAASLRDK 284 Query: 225 LAALSHIQNHNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ 284 L AL + + + + D S + Q + + ++ +A Sbjct: 285 LHALQWLDDRLNLLRTARDRNSFVYPLEGTDGQ---TRWYLIHRGEVQAVSFPPDAESAT 341 Query: 285 ILSYFLRQFYTDKPCP 300 ++ L + D+P P Sbjct: 342 RVASLLGATFADRPAP 357 >gi|207857182|ref|YP_002243833.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206708985|emb|CAR33315.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 302 Score = 137 bits (345), Expect = 5e-30, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 13/182 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 39 EAPALPGVYVFHSESDTLPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQARRISWICT 94 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + ++++ + S Sbjct: 95 AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 150 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A +++ +L L + R R C F +KRC+G C G+ + + Sbjct: 151 LFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRACFRFALKRCAGACCGQETPQA 210 Query: 180 YM 181 + Sbjct: 211 HF 212 >gi|200389394|ref|ZP_03216005.1| GIY-YIG catalytic domain protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199601839|gb|EDZ00385.1| GIY-YIG catalytic domain protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 293 Score = 137 bits (345), Expect = 5e-30, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 13/182 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 EAPALPGVYIFHSESDTLPLYIGKSVNIRSRVLSHLRTPDE----ATMLRQARRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + ++++ + S Sbjct: 86 AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A +++ +L L + R R C F +KRC+G C G+ + + Sbjct: 142 LFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRACFRFALKRCAGACCGQETPQA 201 Query: 180 YM 181 + Sbjct: 202 HF 203 >gi|168821953|ref|ZP_02833953.1| GIY-YIG catalytic domain protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205341606|gb|EDZ28370.1| GIY-YIG catalytic domain protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 302 Score = 137 bits (345), Expect = 5e-30, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 13/182 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 39 EAPALPGVYIFHSESETLPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQARRISWICT 94 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + ++++ + S Sbjct: 95 AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 150 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A +++ +L L + R R C F +KRC+G C G+ + + Sbjct: 151 LFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRACFRFALKRCAGACCGQETPQA 210 Query: 180 YM 181 + Sbjct: 211 HF 212 >gi|304397600|ref|ZP_07379477.1| Excinuclease ABC C subunit domain protein [Pantoea sp. aB] gi|304354772|gb|EFM19142.1| Excinuclease ABC C subunit domain protein [Pantoea sp. aB] Length = 313 Score = 137 bits (345), Expect = 5e-30, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 87/220 (39%), Gaps = 16/220 (7%) Query: 6 MPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY + LY+GK+ NL+ R+ S+ + + M+ Q + + T Sbjct: 35 LPNHPGVYTFHGESESLPLYIGKSVNLRSRVMSHFRTPDE----AKMLRQSRRVSWIPTA 90 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG-SYFG 123 ++ ALLLEA MIK +P FN LR ++ + ITD P + +D Q + FG Sbjct: 91 GDLGALLLEAQMIKTQQPLFNKRLRKNRQLCSLQITDGK--PNVVYAKDLDFSQSPNLFG 148 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEKYME 182 + S A + + L + L + R C ++RC+G C G+ + + Sbjct: 149 LYRSRFAALERLKQLADEYQLCHGLLGLEALSAGRGCFRSALRRCAGACCGKEPVSDHQD 208 Query: 183 -------FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDY 215 V G ++E Y Sbjct: 209 RLLEALENVRVFCWPWQGAVGLVEEGKEMTQIHVIDHWFY 248 >gi|300716442|ref|YP_003741245.1| Excinuclease cho [Erwinia billingiae Eb661] gi|299062278|emb|CAX59395.1| Excinuclease cho [Erwinia billingiae Eb661] Length = 287 Score = 137 bits (345), Expect = 5e-30, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 99/243 (40%), Gaps = 16/243 (6%) Query: 6 MPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY + LY+GK+ NL+ R+ S+ + + M+ Q + F T Sbjct: 31 LPSLPGVYVFHGESETMPLYIGKSVNLRSRVMSHFRTADE----AKMLRQAKRVTFIPTA 86 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGSYFG 123 E+ ALLLEA MIK +P FN LR ++ + + + P + +D + FG Sbjct: 87 GELGALLLEAQMIKVQQPLFNKRLRKNRQLCSLHMAGEK--PTVVYAKDLDFSHTPDLFG 144 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEKYME 182 +AS A + + + L + + + R C + RC+G C G+ S +++ + Sbjct: 145 LYASRHAALEKLQKIADEQRLCLGVLGLEKLSKGRACFRASLGRCAGACCGKESLDEHQQ 204 Query: 183 FVHEA-------KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235 + A G +++ I Y ++ + + L+ Sbjct: 205 RLIAALERVRVQCWPWQGAVGVVEQGINHQQIHIINNWFYLGSVEDLAQASELTTTPQGF 264 Query: 236 DSI 238 DS Sbjct: 265 DSD 267 >gi|320086209|emb|CBY95983.1| UvrABC system protein C Protein uvrC; Excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 293 Score = 137 bits (344), Expect = 6e-30, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 13/182 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 EAPALPGVYIFHSESETLPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQARRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + ++++ + S Sbjct: 86 AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A +++ +L L + R R C F +KRC+G C G+ + + Sbjct: 142 LFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRACFRFALKRCAGACCGQETPQA 201 Query: 180 YM 181 + Sbjct: 202 HF 203 >gi|227536604|ref|ZP_03966653.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum ATCC 33300] gi|227243681|gb|EEI93696.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum ATCC 33300] Length = 469 Score = 137 bits (344), Expect = 8e-30, Method: Composition-based stats. Identities = 32/86 (37%), Positives = 55/86 (63%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 E++P PG+Y + G+++YVGKA N++KR+ S+ NN ++R + +I +I F + Sbjct: 203 ERLPAKPGIYIFKNNKGKIIYVGKAINIRKRVLSHFTGNNTSNRRQLFLKEIFDIDFEES 262 Query: 64 CTEVEALLLEANMIKRLKPRFNILLR 89 TE+ ALL+E +IK+ P +N L+ Sbjct: 263 GTELMALLMECQLIKKHWPAYNRALK 288 >gi|325983091|ref|YP_004295493.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212] gi|325532610|gb|ADZ27331.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212] Length = 463 Score = 136 bits (343), Expect = 8e-30, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 83/196 (42%), Gaps = 6/196 (3%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + +P GVY + VLYVGK+ +L+ R+ ++ ++ + + + +I + Sbjct: 195 LDIDTLPATCGVYLFHGDS-AVLYVGKSVSLRSRVFNHFQGDHRSTKEMRIAQEIKQVEH 253 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKI-PALYKHRDSSTI-- 117 +T E+ ALLLE+ +IK +P N LR ++ ++ P + DS Sbjct: 254 RITGGELGALLLESRLIKDHQPIHNRQLRRERQLCAWQVSSDPNSKPLVTLINDSDIDWR 313 Query: 118 -QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176 + +G F + + ++ L + L A T C Q+K C G C G S Sbjct: 314 TANNIYGTFKTKRQAVEVLSKLADEYGLCDKALG-LEKGTGVCFAHQLKHCKGLCAGLES 372 Query: 177 SEKYMEFVHEAKKFLS 192 +E + + A Sbjct: 373 TESHWLRLLTALSQYR 388 >gi|270261302|ref|ZP_06189575.1| excinuclease cho [Serratia odorifera 4Rx13] gi|270044786|gb|EFA17877.1| excinuclease cho [Serratia odorifera 4Rx13] Length = 283 Score = 136 bits (343), Expect = 8e-30, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 20/245 (8%) Query: 6 MPECPGVYQMLD-IAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P+ PGVY LY+GK+ N++ R+ ++ + + ++ Q I F T Sbjct: 26 LPKSPGVYLFHGLSDSMPLYIGKSVNIRSRVMAHFRTQDE----ARLLRQTQRISFHETA 81 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG---SY 121 E+ ALLLEA +IK+ +P FN LR K + + + + Sbjct: 82 GELGALLLEAQLIKQQQPLFNKRLRRSKQLCSLHLDGG----QVSIAHAKDIDFAATPNL 137 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEKY 180 G FA+ A + + + L + + R C + +++C+G C G S ++ Sbjct: 138 HGLFANRTAALEKLRIIADEQRLCYGKLGIDKLPAGRGCFRYSLRKCAGVCCGVESDLQH 197 Query: 181 M-------EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 + +G ++ Y ++ + +L + Sbjct: 198 DQRLAAALQQTRINTWPYAGRVAMEEQGAFLRQYHVIHNWFYLGSVGALQQADSLQRTAS 257 Query: 234 HNDSI 238 H DS Sbjct: 258 HFDSD 262 >gi|56413705|ref|YP_150780.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362628|ref|YP_002142265.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127962|gb|AAV77468.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094105|emb|CAR59605.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 293 Score = 136 bits (343), Expect = 9e-30, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 13/182 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 EAPALPGVYVFHSESDTLPLYIGKSVNIRSRVLSHLRTPDE----ATMLRQARRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + ++++ + S Sbjct: 86 AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A +++ +L L + R R C F +KRC+G C G+ + + Sbjct: 142 LFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRACFRFALKRCAGACCGQETPQA 201 Query: 180 YM 181 + Sbjct: 202 HF 203 >gi|73537451|ref|YP_297818.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134] gi|72120788|gb|AAZ62974.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134] Length = 530 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 46/195 (23%), Positives = 89/195 (45%), Gaps = 5/195 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + + +P+ GVY LY+GK+ +L++RI ++ + + + + + + Sbjct: 219 ALDDVPDTAGVYLFYGDNDAPLYIGKSVHLRQRIGAHFSGDYRLGKDMRLARLVRRVEWR 278 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKS-FPYILITDKHKIPALYKHRDSS-TIQG 119 T E+ ALLLEA+++K ++P N +LR + + + + +P L D+ + +G Sbjct: 279 ETGGEIGALLLEASLVKTMQPLHNQMLRGSARLYTW-ELPPELPVPRLRSDADTDFSRRG 337 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISS 177 + +G FAS A + + L L ++ + PC Q+ RC G C GE +S Sbjct: 338 NLYGAFASRGAAQAWLRRLADEHRLCQATLTLEKTARAGNPCFARQLHRCEGACVGEEAS 397 Query: 178 EKYMEFVHEAKKFLS 192 + + A Sbjct: 398 PSHRARIATAMAEAR 412 >gi|308186631|ref|YP_003930762.1| UvrABC system protein C [Pantoea vagans C9-1] gi|308057141|gb|ADO09313.1| UvrABC system protein C [Pantoea vagans C9-1] Length = 286 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 87/220 (39%), Gaps = 16/220 (7%) Query: 6 MPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY + LY+GK+ NL+ R+ S+ + + M+ Q + + T Sbjct: 31 LPNHPGVYTFHGESESLPLYIGKSVNLRSRVMSHFRTPDE----AKMLRQSRRVSWIPTA 86 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG-SYFG 123 ++ ALLLEA MIK +P FN LR ++ + ITD P + +D Q + FG Sbjct: 87 GDLGALLLEAQMIKTQQPLFNKRLRKNRQLCSLQITDGK--PNVVYAKDLDFSQSPNLFG 144 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEKYME 182 + S A + + L + L + R C ++RC+G C G+ + + Sbjct: 145 LYRSRFAALERLKQLANEYQLCHGLLGLEALSAGRGCFRSALRRCAGACCGKEPVSDHQD 204 Query: 183 -------FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDY 215 V G ++E Y Sbjct: 205 RLLEALENVRVFCWPWQGAVGLVEEGKEMTQIHVIDHWFY 244 >gi|205357233|ref|ZP_02346090.2| GIY-YIG catalytic domain protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322967|gb|EDZ10806.1| GIY-YIG catalytic domain protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 293 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 13/182 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 EAPALPGVYIFHSESDTLPLYIGKSVNIRSRVLSHLRTPDE----ATMLRQARRIGWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + ++++ + S Sbjct: 86 AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A +++ +L L + R R C F +KRC+G C G+ + + Sbjct: 142 LFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRACFRFALKRCAGACCGQETPQA 201 Query: 180 YM 181 + Sbjct: 202 HF 203 >gi|110805451|ref|YP_688971.1| nucleotide excision repair endonuclease [Shigella flexneri 5 str. 8401] gi|110614999|gb|ABF03666.1| putative excinuclease subunit [Shigella flexneri 5 str. 8401] Length = 295 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 53/254 (20%), Positives = 96/254 (37%), Gaps = 19/254 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 DLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ LLLEA +IK +P FN LR ++ + + +K + Sbjct: 86 AGEIGVLLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A + + S+ L R R C +KRC+G C G+ S E+ Sbjct: 142 LFGLFANRRAALQALQSIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + + ++ + L A ++ E H + N + Sbjct: 202 HALRLRQSLERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEAT 255 Query: 240 NRMDCFSLYHNKNL 253 + + + + Sbjct: 256 TLIRTPAGFDHDGY 269 >gi|326800820|ref|YP_004318639.1| DNA polymerase III subunit epsilon [Sphingobacterium sp. 21] gi|326551584|gb|ADZ79969.1| DNA polymerase III, epsilon subunit [Sphingobacterium sp. 21] Length = 463 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 54/203 (26%), Positives = 83/203 (40%), Gaps = 26/203 (12%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 E++P+ PGVY D G+V+YVGKA N++KR+ ++ N + + + I +I F Sbjct: 192 ERLPQTPGVYYFKDQKGKVVYVGKAKNIKKRVSAHFSGQNPNPQRQNFMRSIYDIDFVSC 251 Query: 64 CTEVEALLLEANMIKRLKPRFNILLR------------DDKSFPYILITDKHKIPALYKH 111 TE+ A LLEA IKRL P N L+ D K + + I + Sbjct: 252 GTELIAFLLEAVEIKRLWPENNRALKRFEPKYGLYSYEDQKGYIRLAIDKHQRFQQA--- 308 Query: 112 RDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPC 171 F +V +N L + L + + CL C G C Sbjct: 309 ----------ICSFGNVIEAYNLVNRLIQEHRLC-AKLNGIQKVQGACLNHINGGCLGAC 357 Query: 172 TGEISSEKYMEFVHEAKKFLSGG 194 GE + + Y E ++ A L+ Sbjct: 358 IGEENKDNYNERMYTALDNLAKM 380 >gi|332291057|ref|YP_004429666.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus 4H-3-7-5] gi|332169143|gb|AEE18398.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus 4H-3-7-5] Length = 458 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 16/184 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P GVY M ++ G ++Y+GK+ N++KR+ + N + + Q+ + + T Sbjct: 192 SVPSETGVYFMHNVNGTIIYIGKSKNMKKRLTQHFT--NDNRKSKQIQDQVETVTYQTTG 249 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDK------SFPYILITDKHKIPALYKHRDSSTIQ 118 TE+ ALL E IKR KP+FN LR K + TD L R + Sbjct: 250 TELIALLKENAEIKRHKPKFNRALRRTKFKVQLTHY-----TDSEGYIHLKTERADGRKE 304 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 +++ + + + + ++ L +++ ++ C + IK+C+G C G S E Sbjct: 305 S--ITTYSNSMSAKANLERIIDSYDLCQ-NKTLYNEKSGNCFNYTIKKCNGACIGGESPE 361 Query: 179 KYME 182 Y + Sbjct: 362 SYNQ 365 >gi|310658034|ref|YP_003935755.1| excinuclease ABC subunit C domain-containing protein [Clostridium sticklandii DSM 519] gi|308824812|emb|CBH20850.1| Excinuclease ABC C subunit domain protein [Clostridium sticklandii] Length = 302 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 72/138 (52%), Gaps = 4/138 (2%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M D V+Y+GK+ NL+ R+KSY + +I M+ + ++ + +T T +EA +LE Sbjct: 1 MKDKNDGVVYIGKSKNLKARVKSYFTKGEKSEKIIRMVHNLKDVDWIITDTHMEAQILEC 60 Query: 75 NMIKRLKPRFNILLRDDKSFPYILI-TDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEK 133 +IK+LKP +N+ ++ +++ Y+ + TD K P L +GP+ V + Sbjct: 61 ALIKKLKPIYNVQFKNHQNYFYLNVGTDSRKKPLLIYSEKQPFDS---YGPYRGRSFVNQ 117 Query: 134 TINSLQRTFFLRSCADSV 151 + L+ + + +DS Sbjct: 118 LLKQLENIYPITKASDSY 135 >gi|312172246|emb|CBX80503.1| putative excinuclease cho [Erwinia amylovora ATCC BAA-2158] Length = 289 Score = 134 bits (338), Expect = 4e-29, Method: Composition-based stats. Identities = 52/214 (24%), Positives = 94/214 (43%), Gaps = 9/214 (4%) Query: 3 SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PGVY + LY+GK+ N++ R+ S++ + + M+ Q I F Sbjct: 28 LEALPKLPGVYVFHGDSETMPLYIGKSVNIRSRVLSHLRTADE----ARMLRQATRISFI 83 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGS 120 T E+ ALLLEA MIK +P FN LR ++ + I P + ++ + Sbjct: 84 TTAGELGALLLEARMIKLQQPLFNKRLRKNRQLCALQIAAGS--PQVVYAKEVDFSTTSG 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTR-PCLLFQIKRCSGPCTGEISSEK 179 +G +A+ A +T+ + L + + R+ C F + RC+G C G + Sbjct: 142 LYGLYANRRAALETLQKIADEQRLCYYLLGLEKMRSGNACFRFALNRCAGACCGTETRAA 201 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKE 213 + + + A + + E +A +A + Sbjct: 202 HQQRLLSALEAVRVRCWPWPEAVAVLEQRAGQTQ 235 >gi|292488115|ref|YP_003530992.1| putative excinuclease cho [Erwinia amylovora CFBP1430] gi|292899326|ref|YP_003538695.1| excinuclease Cho [Erwinia amylovora ATCC 49946] gi|291199174|emb|CBJ46288.1| excinuclease Cho [Erwinia amylovora ATCC 49946] gi|291553539|emb|CBA20584.1| putative excinuclease cho [Erwinia amylovora CFBP1430] Length = 289 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 52/214 (24%), Positives = 94/214 (43%), Gaps = 9/214 (4%) Query: 3 SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PGVY + LY+GK+ N++ R+ S++ + + M+ Q I F Sbjct: 28 LEALPKLPGVYVFHGDSETMPLYIGKSVNIRSRVLSHLRTADE----ARMLRQATRISFI 83 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGS 120 T E+ ALLLEA MIK +P FN LR ++ + I P + +D + Sbjct: 84 TTAGELGALLLEARMIKLQQPLFNKRLRKNRQLCALQIAAGS--PQVVYAKDVDFSTTSG 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTR-PCLLFQIKRCSGPCTGEISSEK 179 +G +A+ A +T+ + L + + R+ C F + RC+G C G + Sbjct: 142 LYGLYANRRAALETLQKIADEQRLCYYLLGLEKMRSGNACFRFALNRCAGACCGTETRAA 201 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKE 213 + + + A + + + +A +A + Sbjct: 202 HQQRLLSALEAVRVRCWPWPDAVAVLEQRAGQTQ 235 >gi|255532547|ref|YP_003092919.1| DNA polymerase III subunit epsilon [Pedobacter heparinus DSM 2366] gi|255345531|gb|ACU04857.1| DNA polymerase III, epsilon subunit [Pedobacter heparinus DSM 2366] Length = 456 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 55/192 (28%), Positives = 87/192 (45%), Gaps = 4/192 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 +++P+ PGVY D G V+YVGKA N+ KR+ S+ NN + + I++I F Sbjct: 191 QIDKLPQVPGVYYFRDQKGIVVYVGKAKNILKRVCSHFTGNNSGKQRQEFLKNIHSIDFE 250 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRD-DKSFPYILITDKHKIPALYKHRDSSTIQGS 120 + TE+ A +LEA IKRL P N L+ ++ + + D+ L + Sbjct: 251 ICGTELMAFILEAAEIKRLWPENNRALKRYEQKYGLYVFEDQKGYMRLGIDTYKKRVPVL 310 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 Y F S+ + L + L + ++R C +CSG C G S+ Y Sbjct: 311 Y--SFNSLVEGHNLLRRLIKEHKLCEKLCFIQKNRD-ACTGHNEGKCSGACLGIESAASY 367 Query: 181 MEFVHEAKKFLS 192 V A ++LS Sbjct: 368 NVRVKYAIEYLS 379 >gi|1354226|gb|AAB01922.1| 24 kDa protein [Mycoplasma hyopneumoniae] Length = 217 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 37/128 (28%), Positives = 68/128 (53%), Gaps = 3/128 (2%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P GVY+ +LYVGKA NL+ R+ Y ++++ +I + I++ + Sbjct: 2 LPNQVGVYRFYHEKNTLLYVGKAKNLKSRMNQYAKGATNSYKTEVLIRKTKEIKYDILQN 61 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPA---LYKHRDSSTIQGSYF 122 E EAL+LE +I + +P +NI L+DD+++PYI + + K+ R + ++ Sbjct: 62 ETEALILEKKIISKFQPIYNIKLKDDQNYPYIKLELEKKLNIELVYKISRSKRSKNIFFY 121 Query: 123 GPFASVDA 130 GPF + + Sbjct: 122 GPFLNKSS 129 >gi|86131767|ref|ZP_01050364.1| exonuclease family protein [Dokdonia donghaensis MED134] gi|85817589|gb|EAQ38763.1| exonuclease family protein [Dokdonia donghaensis MED134] Length = 400 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 44/262 (16%), Positives = 101/262 (38%), Gaps = 6/262 (2%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +P GVY M ++ ++Y+GK+ N++KR+ + N + + ++ ++ + T Sbjct: 132 KSVPSETGVYFMHNVNETIIYIGKSKNMKKRLTQHFT--NDNRKSKKIQDEVESVTYIQT 189 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYI-LITDKHKIPALYKHRDSSTIQGSYF 122 +E+ ALL E + IK KP++N LR K + TD+ L R + Sbjct: 190 GSELLALLKENDAIKHYKPKYNRALRRTKFKVQLTHFTDQQGYIHLKTERADGRKES--I 247 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 +++ + + ++ + + L + F ++ C + I++C+G C + Y + Sbjct: 248 TTYSNTMSAKSSLERIIAAYNLCM-NKTQFNSKSGSCFNYGIEKCNGACVEKEDPASYNK 306 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242 V + S N ++ + E+ ++ + D + + Sbjct: 307 RVQQFIDKHSYKNKSMIITDRGRKSNERSFVLIENGKFKGIGFYDHNNDISDLDYLNTII 366 Query: 243 DCFSLYHNKNLACIQTCFFHFG 264 + S + Sbjct: 367 EPMSDNRDAKHIIQTYTRSRKR 388 >gi|149277808|ref|ZP_01883948.1| DNA polymerase III, epsilon subunit [Pedobacter sp. BAL39] gi|149231496|gb|EDM36875.1| DNA polymerase III, epsilon subunit [Pedobacter sp. BAL39] Length = 456 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 51/194 (26%), Positives = 83/194 (42%), Gaps = 4/194 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 +++P GVY D G+V+YVGKA N++KR+ S+ NN + + I + F Sbjct: 191 QVDRLPSGSGVYYFKDQKGKVIYVGKAKNIKKRVCSHFSGNNSGRQRQEFLKNIYMVDFE 250 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRD-DKSFPYILITDKHKIPALYKHRDSSTIQGS 120 V TE+ A +LEA IK P N ++ ++ + D+ L + + Sbjct: 251 VCGTELMAFILEAAEIKHYWPDNNRAMKRYEQKYAIFTFEDQRGYMRLGIDKYRHNVPAL 310 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 Y F ++ T+ +L + L + ++R C CSG C G+ S+ Y Sbjct: 311 Y--SFNTILEGHNTLKTLIKEHLLCEKLCYIQKNRI-ACTAQAEGNCSGACIGKESAASY 367 Query: 181 MEFVHEAKKFLSGG 194 V A K L Sbjct: 368 NVRVKFAIKQLKSM 381 >gi|300773503|ref|ZP_07083372.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum ATCC 33861] gi|300759674|gb|EFK56501.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum ATCC 33861] Length = 469 Score = 134 bits (336), Expect = 5e-29, Method: Composition-based stats. Identities = 32/86 (37%), Positives = 54/86 (62%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 E++P PG+Y + G+++YVGKA N++KR+ S+ NN ++R + +I +I F + Sbjct: 203 ERLPAKPGIYIFKNNKGKIIYVGKAINIRKRVLSHFTGNNTSNRRQLFLKEIFDIDFEES 262 Query: 64 CTEVEALLLEANMIKRLKPRFNILLR 89 TE+ ALL+E +IK+ P N L+ Sbjct: 263 GTELMALLMECQLIKKHWPAHNRALK 288 >gi|149372305|ref|ZP_01891493.1| DNA polymerase III, epsilon subunit [unidentified eubacterium SCB49] gi|149354695|gb|EDM43258.1| DNA polymerase III, epsilon subunit [unidentified eubacterium SCB49] Length = 460 Score = 133 bits (335), Expect = 8e-29, Method: Composition-based stats. Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 6/179 (3%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +Q P GVY M D G +LY+GK+ N++KR+ + N + M ++ +I T Sbjct: 192 KQAPSETGVYYMHDTHGNILYIGKSKNIKKRLTQHFT--NDNRKSKEMQLKVTSISIEKT 249 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDK-SFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +E+ ALL E + IKR KPRFN L+ ++ D+ L + + + Sbjct: 250 GSELLALLEENDQIKRHKPRFNRALKRSIFNYQLGSFVDEDGYINLKIEKADARKKA--I 307 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 F++ + + + S F L F T C + IK C G CT EI+ E+Y Sbjct: 308 TTFSNYQSAKNNVASYIEKFNLCQRLSG-FEKSTGACFNYNIKECDGACTQEIAPEEYN 365 >gi|89890222|ref|ZP_01201732.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BBFL7] gi|89517137|gb|EAS19794.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BBFL7] Length = 466 Score = 133 bits (334), Expect = 9e-29, Method: Composition-based stats. Identities = 49/199 (24%), Positives = 86/199 (43%), Gaps = 8/199 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 +Q+PE PGVY D +++Y+GKA N++KR+ S+ +S T + M +I++I Sbjct: 197 QFDQLPETPGVYLFKDQGHKIIYIGKAINIRKRVLSHFYS--KTSKSYLMCQEIHHIDHI 254 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDK-SFPYILITDKHKIPALYKHRDSSTIQGS 120 VT E+ ALL E+++IK+ P+FN++ + K ++ + ++ I S Sbjct: 255 VTGNELVALLQESDLIKKHYPKFNVVQKKPKPAYQILHYKNQLGIIQFAVGLVKSYD--- 311 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSV-FRHRTRPCLLFQIKRCSGPCTGEISSEK 179 + + Q C F+ + +++K C G C E Sbjct: 312 -YSVVTHYNRAHAVEQLEQLCADYNLCPRYCSFKTKDDCTSHYKLKNCKGVCKKEELVSL 370 Query: 180 YMEFVHEAKKFLSGGNHNL 198 Y +A L N N Sbjct: 371 YNLRAQQALDSLHHQNPNY 389 >gi|152061172|dbj|BAF73630.1| excinuclease ABC subunit C [Pseudomonas syringae pv. tabaci] Length = 274 Score = 132 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 65/176 (36%), Positives = 98/176 (55%), Gaps = 4/176 (2%) Query: 89 RDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCA 148 RDDKS+PY+ ++D P L HR + +G YFGP+ S A+ ++++ LQ+TF +R C Sbjct: 96 RDDKSYPYVFLSDG-NYPRLSIHRGTKKAKGRYFGPYPSAGAIRESLSLLQKTFQVRQCE 154 Query: 149 DSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQ 208 DS F++RTRPCL +QIKRC GPC G + E Y E V + FL G ++ L +++ +M + Sbjct: 155 DSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSVMFLEGRSNALSDELNASMEK 214 Query: 209 ATLKEDYESAIIHRDR---LAALSHIQNHNDSIYNRMDCFSLYHNKNLACIQTCFF 261 A + D+E A RD +A Q D +D + + N AC+ Sbjct: 215 AAMALDFERAAELRDTGRLVATAYQDQQSMDGGTGDVDVVAAFVNPGGACVHLIQR 270 >gi|295135069|ref|YP_003585745.1| exonuclease family protein [Zunongwangia profunda SM-A87] gi|294983084|gb|ADF53549.1| exonuclease family protein [Zunongwangia profunda SM-A87] Length = 457 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 51/262 (19%), Positives = 99/262 (37%), Gaps = 21/262 (8%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P G+Y + D G ++Y+GK+ N++KRI + +++ R M ++ ++ + Sbjct: 190 LDDLPAITGIYYLHDEDGEIIYIGKSKNIKKRINQHFTNDH--ARAREMQKEVASVSYES 247 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKS------FPYILITDKHKIPALYKHRDSST 116 T E+ ALL E IK KP++N L+ K + Y TDK L + +T Sbjct: 248 TGNELIALLRENQEIKNNKPKYNRALK--KHIFTHGLYHY---TDKDGYINLKISKARAT 302 Query: 117 IQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176 F+S+ + + ++ + L + C + IK C G C G S Sbjct: 303 KNC--ITTFSSLRSAKSSLARWIEEYELCARISGEHIGSGS-CFNYTIKSCHGACIGHES 359 Query: 177 SEKYMEFVHEAKKFLSGGNHNL-----KEKIARNMNQATLKEDYESAIIHRDRLAALSHI 231 +E Y V + + S N N+ + ++ + Sbjct: 360 TEDYNARVMQLIEKYSYINQNMLVIDRGRDVDEKSALLIEAGKFKGVGYYNLNHQINKLD 419 Query: 232 QNHNDSIYNRMDCFSLYHNKNL 253 + D + + ++ Sbjct: 420 IIRSIITPMTNDRDAQHIIQSY 441 >gi|259908591|ref|YP_002648947.1| nucleotide excision repair endonuclease [Erwinia pyrifoliae Ep1/96] gi|224964213|emb|CAX55720.1| Excinuclease cho [Erwinia pyrifoliae Ep1/96] gi|283478561|emb|CAY74477.1| putative excinuclease cho [Erwinia pyrifoliae DSM 12163] gi|310767508|gb|ADP12458.1| nucleotide excision repair endonuclease [Erwinia sp. Ejp617] Length = 289 Score = 131 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 53/254 (20%), Positives = 101/254 (39%), Gaps = 15/254 (5%) Query: 3 SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PGVY + LY+GK+ N++ R+ S++ + + M+ Q I F Sbjct: 28 LEALPKLPGVYVFHGDSETMPLYIGKSVNIRSRVLSHLRTADE----ARMLRQATRISFM 83 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGS 120 T E+ ALLLEA MIK +P FN LR ++ + I P + +D + Sbjct: 84 TTAGELGALLLEARMIKLQQPLFNKRLRKNRQLCALQI--AEGSPLVVYAKDVDFSSTSG 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTR-PCLLFQIKRCSGPCTGEISSEK 179 +G +A+ A +T+ + L + + R+ C F + RC+G C G+ + + Sbjct: 142 LYGLYANRRAALETLQKIADEQRLCYYLLGLEKMRSGNACFRFALNRCAGACCGKETRAE 201 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239 + + + A + + + + A L++ H + + Sbjct: 202 HQQRLLSALEAVRLRCWPWPDAV------AVLEQRTGQTQYHIINNWLYLGSVSKLEEAA 255 Query: 240 NRMDCFSLYHNKNL 253 + + Sbjct: 256 GLCSTTPGFDSDGY 269 >gi|325288090|ref|YP_004263880.1| DNA polymerase III subunit epsilon [Cellulophaga lytica DSM 7489] gi|324323544|gb|ADY31009.1| DNA polymerase III, epsilon subunit [Cellulophaga lytica DSM 7489] Length = 447 Score = 131 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 47/190 (24%), Positives = 90/190 (47%), Gaps = 6/190 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P PG+Y + G+++Y+GKA +L+KR+ S+ +S T + M + +I F ++ Sbjct: 192 KIPNTPGIYYFKNKKGKIIYIGKAVDLKKRVLSHFYS--KTQKSLDMCRETADIDFELSG 249 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDD-KSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E+ ALL+E IK+ P +N L + K++ TD+ I ++ +S + Sbjct: 250 SELVALLMEDAAIKQHYPEYNQLAKRTLKNYAVFSYTDRKGI--IHLAYNSVKNSPNPLK 307 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 F++V + L F L + + C +I C+G C + E+Y Sbjct: 308 IFSNVRQCRAYVEELCFLFNLCP-KYCHLQEGVQACNHHKISACNGICRQNETPEEYNLR 366 Query: 184 VHEAKKFLSG 193 V +A + + Sbjct: 367 VDKAIQHIKD 376 >gi|254489685|ref|ZP_05102881.1| exonuclease family [Methylophaga thiooxidans DMS010] gi|224465094|gb|EEF81347.1| exonuclease family [Methylophaga thiooxydans DMS010] Length = 488 Score = 131 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 55/217 (25%), Positives = 90/217 (41%), Gaps = 4/217 (1%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +PE G+Y+ D G +LY+GK+ N+++R+ S+ ++ + + Q+++I F Sbjct: 199 DIDLLPEAAGIYRFYDANGGLLYIGKSVNIRERVLSHFGQDHQHGKELDISQQLHHITFQ 258 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILL-RDDKSFPYILITDKHKIPALYK---HRDSSTI 117 T ++ A LLE IK PRFN + K + L TDK L Sbjct: 259 QTPSDFGAQLLENTEIKHYSPRFNRRQTKTKKLYQLTLTTDKQGYHHLKTEVADMTEINT 318 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 +G F S EK + L T L + + + C +Q+K+C G C G+ S+ Sbjct: 319 ITQRYGLFRSRKQAEKKMLELIDTHRLCQKLCGIEKSQRGACFGYQLKKCRGACCGDESA 378 Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKED 214 E Y + A L I + D Sbjct: 379 ETYNLRLQLALAQLKNQQWPWSGPIVVEEHPVHDDWD 415 >gi|205352966|ref|YP_002226767.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272747|emb|CAR37663.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628040|gb|EGE34383.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 302 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 46/182 (25%), Positives = 82/182 (45%), Gaps = 13/182 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + P PG Y + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 39 EAPALPGAYVFHSESDTLPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQARRISWICT 94 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + ++++ + S Sbjct: 95 AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 150 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179 FG FA+ A +++ +L L + R C F +KRC+G C G+ + + Sbjct: 151 LFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSHGRACFRFALKRCAGACCGQETPQA 210 Query: 180 YM 181 + Sbjct: 211 HF 212 >gi|329946892|ref|ZP_08294304.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328526703|gb|EGF53716.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 552 Score = 130 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 55/232 (23%), Positives = 91/232 (39%), Gaps = 24/232 (10%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ +P PG+YQ A +VLYVG A +L++R++SY + ++ M+ ++R Sbjct: 220 ADDLPSSPGIYQFRSAADQVLYVGSAVDLRRRVRSYFTAAEKRSKVAQMLDTTVSVRHIA 279 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKI---PALYKHRD-SSTIQ 118 T T +EA + E MI L P N R + P++ +T P L + Sbjct: 280 TPTLIEARVRELRMIAELDPPVNRRSRAPRRQPWLHLTGGTGPGVEPRLALTTVLPTEEA 339 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 G GPFAS ++ + + + L +R G + ++ Sbjct: 340 GHAIGPFASRSRGQEALRAAESVLRL--------------------RRWDGHELRRVRTD 379 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH 230 EA LSG + + + + E YE A DRL L Sbjct: 380 DAPAEPEEALACLSGTVDLVAAPLLERIATLSRAERYEEAGTWTDRLRCLLR 431 >gi|297171306|gb|ADI22311.1| nuclease subunit of the excinuclease complex [uncultured actinobacterium HF0500_01C15] Length = 149 Score = 130 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 77/153 (50%), Gaps = 7/153 (4%) Query: 446 EENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSA 505 +E + +Q+ D+ ++DGG QL A + + +++ ++AK + Sbjct: 2 KEAVERXFXRQQXEGNPLADLTVVDGGXAQLXXAVAAXDDXGISD-VSVAALAKKRE--- 57 Query: 506 GMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIG 564 E + E++ + + L+ +QRJ EAHRFA+ +RK R + L EI GIG Sbjct: 58 --EVXXPGQRESVHXDRXNRALHLLQRJXXEAHRFALRYNRKLRSRRTIRXELGEIPGIG 115 Query: 565 PLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 P R+ +JL+ FG+ + + +S E + + G S+ Sbjct: 116 PHRQTVJLRRFGSXQGVREASKEDIXRVPGFSE 148 >gi|293396618|ref|ZP_06640894.1| excinuclease cho [Serratia odorifera DSM 4582] gi|291420882|gb|EFE94135.1| excinuclease cho [Serratia odorifera DSM 4582] Length = 283 Score = 130 bits (327), Expect = 7e-28, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 90/227 (39%), Gaps = 17/227 (7%) Query: 5 QMPECPGVYQMLDI-AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +P+ PGVY G LY+GK+ N++ R+ ++ + ++ Q I FT T Sbjct: 25 TLPKVPGVYVFHGQRDGMPLYIGKSVNIRSRVMAHFRCKDEG----KLLRQTQRISFTET 80 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALL+EA MIK L+P FN LR + + + L Sbjct: 81 AGELGALLIEAQMIKALQPLFNKRLRRSRQLCSLHLQAS----RLEIVYAKEIDFALTPA 136 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179 +G FA+ A + + ++ L + R C + +C+G C G+ S E+ Sbjct: 137 LYGLFANRTAALEKLRTIADQQQLCYGRLGLEALPPGRACFRHSLHKCAGVCCGKQSEEQ 196 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA 226 + + + +A + L A + + D+ I + Sbjct: 197 HQQRLAQALEQLR----IHCWPYAGRVALHEQRGDFNQYHIIHNWFY 239 >gi|312887472|ref|ZP_07747071.1| DNA polymerase III, epsilon subunit [Mucilaginibacter paludis DSM 18603] gi|311300112|gb|EFQ77182.1| DNA polymerase III, epsilon subunit [Mucilaginibacter paludis DSM 18603] Length = 456 Score = 130 bits (327), Expect = 7e-28, Method: Composition-based stats. Identities = 47/200 (23%), Positives = 76/200 (38%), Gaps = 8/200 (4%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 E +P+ PGVY D G+V+YVGKA +L+KR+KS+ +N + + I+ I Sbjct: 192 ETLPDAPGVYYFHDAKGKVVYVGKAKSLKKRVKSHFTNNRADLQKQEFLKNIHQITHQTC 251 Query: 64 CTEVEALLLEANMIKRLKPRFNI-LLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 TE+ A +LE IKRL P++N R + ++ D+ L Y Sbjct: 252 GTELLAFILETVEIKRLWPKYNRAQKRHEHTYGLYQYEDQRGYLRLVI-----NKWTKYS 306 Query: 123 GP-FASVDAVEKTINSLQRTFFLRSCADSVF-RHRTRPCLLFQIKRCSGPCTGEISSEKY 180 P + +E Q C F + +PC K C+ T Sbjct: 307 APLYTCNSLLEGYGLLNQLIADFDLCPKLCFIQKNDQPCPRNLTKPCACQVTETPKRYNS 366 Query: 181 MEFVHEAKKFLSGGNHNLKE 200 + +++ Sbjct: 367 RVNKATTHLKAALSTFAIRD 386 >gi|168070128|ref|XP_001786703.1| predicted protein [Physcomitrella patens subsp. patens] gi|162660676|gb|EDQ48483.1| predicted protein [Physcomitrella patens subsp. patens] Length = 473 Score = 129 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 51/148 (34%), Positives = 75/148 (50%), Gaps = 20/148 (13%) Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEY 458 M+V + K +YRKF + V+ DD MR V+ RR+S+L+K + Sbjct: 1 MIVFTDGRPDKKEYRKFKIKT--VEGPDDYGSMREVIRRRYSRLLKED------------ 46 Query: 459 SFPSWPDVVILDGGKGQLSAAQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEA 517 PD++++DGGKGQ+SAA VL+ +L + I + +AK K F E Sbjct: 47 --GRMPDLIVIDGGKGQISAAMDVLENELGLY--IPVCGLAKDEKHKTAQ-LMFGDPPEP 101 Query: 518 LVLNMRDPILYFIQRLRDEAHRFAITTH 545 + L Y +QR++DE HRFAIT H Sbjct: 102 VELKRDSYEFYLLQRVQDEVHRFAITFH 129 >gi|260597615|ref|YP_003210186.1| nucleotide excision repair endonuclease [Cronobacter turicensis z3032] gi|260216792|emb|CBA30253.1| Excinuclease cho [Cronobacter turicensis z3032] Length = 293 Score = 129 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 9/193 (4%) Query: 3 SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P+ PGVY + LY+GK+ N++ R+ S++ + + M+ Q I F Sbjct: 28 LEDLPKHPGVYVFHGESETMPLYIGKSVNIRSRVLSHLRTPDE----ASMLRQSRRITFI 83 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGS 120 T E+ ALLLEA MIK +P FN LR ++ + + P + RD + Q Sbjct: 84 RTAGEIGALLLEAQMIKEQQPLFNKRLRRNRQLCSLQFKGEK--PDVVYARDVDFSHQPG 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEK 179 +G F+S A T+ S+ L + R R C +KRC+G C G+ E Sbjct: 142 LYGLFSSRRAALGTLQSIADEQQLCYGLLGLESVRPGRACFRSALKRCAGACCGKEPLEA 201 Query: 180 YMEFVHEAKKFLS 192 + + +A + + Sbjct: 202 HNARLMDALERMR 214 >gi|156934319|ref|YP_001438235.1| nucleotide excision repair endonuclease [Cronobacter sakazakii ATCC BAA-894] gi|156532573|gb|ABU77399.1| hypothetical protein ESA_02150 [Cronobacter sakazakii ATCC BAA-894] Length = 293 Score = 129 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 9/193 (4%) Query: 3 SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +P+ PGVY + LY+GK+ N++ R+ S++ + + M+ Q I F Sbjct: 28 LDDLPKHPGVYVFHGESETMPLYIGKSVNIRSRVLSHLRTPDE----ASMLRQSRRITFI 83 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGS 120 T E+ ALLLEA MIK +P FN LR ++ + + P + RD + Q Sbjct: 84 RTAGEIGALLLEAQMIKEQQPLFNKRLRRNRQLCSLQFKGEK--PDVVYARDVDFSHQPG 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEK 179 +G F+S A T+ S+ L + R R C +KRC+G C G+ E Sbjct: 142 LYGLFSSRRAALGTLQSIADEQQLCYGLLGLESVRPGRACFRSALKRCAGACCGKEPLEA 201 Query: 180 YMEFVHEAKKFLS 192 + + EA + + Sbjct: 202 HNARLMEALERMR 214 >gi|327405996|ref|YP_004346834.1| DNA polymerase III subunit epsilon [Fluviicola taffensis DSM 16823] gi|327321504|gb|AEA45996.1| DNA polymerase III, epsilon subunit [Fluviicola taffensis DSM 16823] Length = 458 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 53/199 (26%), Positives = 93/199 (46%), Gaps = 6/199 (3%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 E++P PG+Y+ + +++Y+GK+ +++KRI+ ++ N T + + M +I I F + Sbjct: 191 LEEIPNKPGIYKFYNDTNQLIYIGKSKHIKKRIEQHL-KNVKTLKGSIMREEIARIEFEL 249 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHK--IPALYKHRDSSTIQGS 120 T +E+ ALL E+ +IK KP +N LR + ++ Y L + + + LY + Sbjct: 250 TGSELIALLYESELIKIHKPIYNRALRRN-NYSYGLFSFEDQAGFIQLYVD-KINKTSNL 307 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 F + I L F L + C +QIK+C G C G +SE Y Sbjct: 308 PITTFTTKKEANDYIFQLVDEFQLCQ-KLVGLEKSSGSCFGYQIKKCHGACVGAETSESY 366 Query: 181 MEFVHEAKKFLSGGNHNLK 199 + L+ + NL Sbjct: 367 NLRIQALINQLTFDDDNLF 385 >gi|86144205|ref|ZP_01062541.1| probable DNA-directed DNA polymerase III (epsilon subunit) [Leeuwenhoekiella blandensis MED217] gi|85829335|gb|EAQ47801.1| probable DNA-directed DNA polymerase III (epsilon subunit) [Leeuwenhoekiella blandensis MED217] Length = 458 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 47/250 (18%), Positives = 94/250 (37%), Gaps = 11/250 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P GVY M + G V+Y+GK+ N++KR+ + S++ + + + + + T Sbjct: 192 DLPSTTGVYYMHNANGTVIYIGKSKNIKKRVNQHFTSDH--RKAKKIQEDVETVSYDETG 249 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDK-SFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E+ ALL E IK +KPR N LR K + D L + + Sbjct: 250 SELVALLKENEEIKGIKPRHNRALRRTKFKTQMVQFIDDAGYINLKL--EKANPNTESIT 307 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME- 182 FA+ + ++ + + + L + + C + IK C G C GE + E+Y E Sbjct: 308 TFATSHSAKQYLEKMLAEYNLCQSKMGLHQT-NGNCFNYTIKECEGACVGEEAPEQYNER 366 Query: 183 -FVHEAKKFLSGGNHNLKEK---IARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +K N + ++ + + ++ + + Sbjct: 367 VQQFISKHSFENKNFLIIDRGRSVDERSVILIEEGQFKGYGFYNLNFQINNLEILERIIT 426 Query: 239 YNRMDCFSLY 248 + + + Sbjct: 427 PMHDNRDARH 436 >gi|146299725|ref|YP_001194316.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae UW101] gi|146154143|gb|ABQ04997.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae UW101] Length = 459 Score = 129 bits (324), Expect = 2e-27, Method: Composition-based stats. Identities = 36/86 (41%), Positives = 51/86 (59%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE PG+Y + A +V+YVGKA NL+KR+ S+ NN + H + I I F + Sbjct: 197 NLPEKPGIYYFYNQAKKVIYVGKAVNLKKRVTSHFTGNNINPQRQHFLRDIYGISFEICA 256 Query: 65 TEVEALLLEANMIKRLKPRFNILLRD 90 TE+ ALLLE IK+L P +N L+ Sbjct: 257 TELMALLLECTEIKKLWPTYNRALKR 282 >gi|56478059|ref|YP_159648.1| excinuclease Cho [Aromatoleum aromaticum EbN1] gi|56314102|emb|CAI08747.1| Excinuclease Cho, similar to DNA polymerase III epsilon subunit family [Aromatoleum aromaticum EbN1] Length = 478 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 47/217 (21%), Positives = 80/217 (36%), Gaps = 5/217 (2%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +P+ PGVY LY+GK+ +L+ R+ ++ +++ R + Q+ I + VT Sbjct: 207 DAIPDAPGVYLFYGENDLPLYIGKSKHLRTRVLAHFGADHRNSREMTLSQQVRRIDWIVT 266 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDK-HKIPALYKHRDSSTIQGS-- 120 E+ ALL EA +IK L P N LR + + + S G Sbjct: 267 AGEIGALLKEAELIKSLLPTMNRKLRRSRELCSWELQPQADGGWRPELVHASDLDFGRQE 326 Query: 121 -YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH-RTRPCLLFQIKRCSGPCTGEISSE 178 +G F + A + + + L + + C Q+ RC G C G S Sbjct: 327 HLYGLFRTRRAAIEALRKIAAEQQLCPPLLGLEKPAGDGRCFTHQLHRCKGACAGGESRR 386 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDY 215 + + A L + + A D Sbjct: 387 LHGARLMLALHDLRVEHWPYPGPVGIREGDAMHVVDS 423 >gi|227111914|ref|ZP_03825570.1| nucleotide excision repair endonuclease [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 281 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 76/186 (40%), Gaps = 13/186 (6%) Query: 2 SSEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + +P PGVY + LY+GK+ N++ R+ S+M T + ++ QI I F Sbjct: 20 ELDGLPTAPGVYIFYGDSETLPLYIGKSINIRARVLSHMR----TRKEAKLLRQIRRITF 75 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI--- 117 T E+ ALLLEA MIK+ P FN LR + + + + Sbjct: 76 IETAGEIGALLLEAQMIKQQVPLFNKRLRRSRQLCSLHFDGT----QIEVVYAKNVDFST 131 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSV-FRHRTRPCLLFQIKRCSGPCTGEIS 176 +G F+ A + ++ L + R C +K+C+G C G+ S Sbjct: 132 TAGLYGLFSHRLAAVNALKTIADEEKLCLGVLGIEHLPAGRACFRHALKKCAGACCGKES 191 Query: 177 SEKYME 182 ++ Sbjct: 192 ISEHQN 197 >gi|311031408|ref|ZP_07709498.1| excinuclease ABC subunit C [Bacillus sp. m3-13] Length = 85 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 47/74 (63%), Gaps = 1/74 (1%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ PG Y M D G ++YVGKA L+ R++SY + H + ++++I + + VT + Sbjct: 12 LPDQPGCYLMKDRQGTIIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVNEIVDFEYIVTSS 70 Query: 66 EVEALLLEANMIKR 79 +EAL+LE N+ K+ Sbjct: 71 NIEALILELNLNKK 84 >gi|313674131|ref|YP_004052127.1| DNA polymerase iii, epsilon subunit [Marivirga tractuosa DSM 4126] gi|312940829|gb|ADR20019.1| DNA polymerase III, epsilon subunit [Marivirga tractuosa DSM 4126] Length = 465 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 4/190 (2%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 E +PE PGVY L+ +++YVGKA N++KR+ ++ + SQI+++ + +T Sbjct: 192 EDLPESPGVYYFLNQKSQIIYVGKAKNIKKRVSNHFGGSKLEVAKQAFQSQIHHVDYYLT 251 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDK-SFPYILITDKHKIPALYKHRDSSTIQGSYF 122 E+ ALL E++ I++ PR+N +++ + L D+ L R + Sbjct: 252 GNELIALLHESHEIRKNWPRYNRAQKNNSPGYSIYLYEDRQGYKRLQLGRKQT--GMQSL 309 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 F + + +N + + + + + C + + C G C GE S ++ E Sbjct: 310 MRFPNHASGFSFLNEVSKKLKICPKFAGI-QSSPGTCFDYSVNLCEGACAGEESVSQHNE 368 Query: 183 FVHEAKKFLS 192 + Sbjct: 369 KIQAFIDHCK 378 >gi|225012865|ref|ZP_03703298.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium MS024-2A] gi|225002987|gb|EEG40964.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium MS024-2A] Length = 458 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 102/257 (39%), Gaps = 10/257 (3%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++P GVY + + ++Y+GK+ N++KR+ S++ + + +++++I F++T Sbjct: 191 DKLPSEMGVYYLHNSENEIIYIGKSNNIKKRVLSHLTGTQ--RKSIAIQAELSHITFSLT 248 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPY-ILITDKHKIPALYKHRDSSTIQGSYF 122 E+ LL E N IK + P+FN +R + FP I I + P L + ++ Y Sbjct: 249 GGELVTLLKEQNEIKNIAPKFNRAMR-FRIFPMGIRIDNTETYPKLIL--EQVKLEEQYI 305 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 F + + + F + + S+ + T C I++C G C G + E Y Sbjct: 306 SVFKNQKVAKTVLFRWADDFGICTHKTSLSKSDT-ACFNHGIQKCDGACIGAETPESY-- 362 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242 + + L ++ + + + + + R + + S Sbjct: 363 -QEKIQLLLEDLSYPHEHFLIIERGKKEGESSFVYIENSIFRGYGYHELNHQIKSQNQIE 421 Query: 243 DCFSLYHNKNLACIQTC 259 N A Sbjct: 422 ARLIPMENNPDAQKLIR 438 >gi|149372989|ref|ZP_01891945.1| DNA polymerase III, epsilon subunit [unidentified eubacterium SCB49] gi|149354349|gb|EDM42916.1| DNA polymerase III, epsilon subunit [unidentified eubacterium SCB49] Length = 472 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 50/192 (26%), Positives = 95/192 (49%), Gaps = 10/192 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++P G+Y D G++LYVGKA N++KR+ S+++S T + +M ++ +++ F T Sbjct: 201 RLPSTAGIYLFKDKKGKILYVGKAKNIKKRVLSHLYS--KTQKSINMCAETHHLDFVETG 258 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDD-KSFPYILITDKHKIPALYK--HRDSSTIQGSY 121 E+ ALLLE++ I++ P+FN + K+F I T++ + + R ++ + Sbjct: 259 NELSALLLESDYIQQFYPKFNKAQKRPVKTFQIISYTNRIGVEQIALGECRSATNSVYTL 318 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 + + A + L T+ L + PC ++I C G C+G + Y Sbjct: 319 Y----NKIAGLALLTRLCETYNLCP-KYCALQTTNEPCSHYKITDCYGVCSGNEPAVAYN 373 Query: 182 EFVHEAKKFLSG 193 + V +A + L Sbjct: 374 KRVSKALEALEN 385 >gi|254821932|ref|ZP_05226933.1| hypothetical protein MintA_18512 [Mycobacterium intracellulare ATCC 13950] Length = 323 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 47/105 (44%), Gaps = 1/105 (0%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ +P PGVY + VLY+G A +L++R+ Y + R+ M++ + Sbjct: 220 ADGLPHRPGVYLFRGPSDEVLYIGTAVDLRRRVLQYFTGADPRGRMKEMVTLACAVDHVE 279 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPA 107 +EA + E ++ P +N R + + ++ +T P Sbjct: 280 CAHALEAGVRELRLLAAHAPPYNRRSRFPQRWWWVALT-DEAFPR 323 >gi|329296173|ref|ZP_08253509.1| nucleotide excision repair endonuclease [Plautia stali symbiont] Length = 286 Score = 127 bits (320), Expect = 4e-27, Method: Composition-based stats. Identities = 49/218 (22%), Positives = 79/218 (36%), Gaps = 16/218 (7%) Query: 6 MPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PG Y LY+GK+ NL+ R+ ++ + + M+ Q + + T Sbjct: 31 LPNQPGAYTFHGDNDNLPLYIGKSINLRSRVMAHFRTADE----ASMLRQARRVSWIPTA 86 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGSYFG 123 +V A LLEA MIK +P FN LR ++ + + P + RD + +G Sbjct: 87 GDVGAQLLEAQMIKTQQPLFNKRLRKNRQLCSLQL--GDGAPQVVYARDLDFSSSTDLYG 144 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEKYME 182 F S A + + SL L + R R C +KRC+G C G Y + Sbjct: 145 LFRSHFAALEKLKSLADELRLCHGLLGLERLQPGRGCFRAALKRCAGACCGAEPLAAYQQ 204 Query: 183 -------FVHEAKKFLSGGNHNLKEKIARNMNQATLKE 213 + G ++ Sbjct: 205 RLLARLEQLRVVCWPWQGPVGMVERGTEMTQIHVIAHW 242 >gi|311695934|gb|ADP98807.1| DNA polymerase III, epsilon subunit [marine bacterium HP15] Length = 486 Score = 127 bits (320), Expect = 4e-27, Method: Composition-based stats. Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 2/192 (1%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PGVY+ +LYVGK+ N+ +R+ S+ ++++ R M + + +T Sbjct: 202 LQDLPRGPGVYRFYGENDVLLYVGKSTNIAQRVASHFSGDHNSARGVRMSESLRRVEWTE 261 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHK-IPALYKHRDSSTIQ-GS 120 T E+ ALLLE IK LKP FN R K+ I ++ R+ + G Sbjct: 262 TAGELGALLLELKQIKTLKPLFNRRSRAAKNLVSIELSRNEAGYLQARLVREIEPHRLGD 321 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFG F S E+ ++ + L + + PC + RC G C + E+Y Sbjct: 322 YFGLFRSKRDAERALSGIAAKNELCNRLLGLEPEHEGPCFQRALGRCKGACEELENVERY 381 Query: 181 MEFVHEAKKFLS 192 V A L Sbjct: 382 NLRVQIAFHGLR 393 >gi|332293348|ref|YP_004431957.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus 4H-3-7-5] gi|332171434|gb|AEE20689.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus 4H-3-7-5] Length = 466 Score = 127 bits (319), Expect = 5e-27, Method: Composition-based stats. Identities = 47/189 (24%), Positives = 82/189 (43%), Gaps = 6/189 (3%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++PE G+Y D AG+V+YVGKA N++KR+ S+ + + + + + I + VT Sbjct: 200 QELPETAGIYLFKDRAGKVIYVGKAINIKKRVLSHFYDKKN--KEYLLGQETYQIDYEVT 257 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKS-FPYILITDKHKIPALYKHRDSSTIQGSYF 122 E+ ALLLE+ I++ P+FN + S + I ++ I L + + Sbjct: 258 GNELCALLLESEYIQQYFPKFNRAQKIPTSNYSIISYENRKGIIQLAVAKTKYRHTATQ- 316 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 F A E+ + + + C + +K C G C+ S Y Sbjct: 317 KVFTRAKATERLMELCEMYELCPRF--CGLQATFNECSHYSLKNCKGICSNNESVTDYNL 374 Query: 183 FVHEAKKFL 191 V EA + Sbjct: 375 RVREALQSF 383 >gi|237785314|ref|YP_002906019.1| hypothetical protein ckrop_0715 [Corynebacterium kroppenstedtii DSM 44385] gi|237758226|gb|ACR17476.1| hypothetical protein ckrop_0715 [Corynebacterium kroppenstedtii DSM 44385] Length = 616 Score = 127 bits (319), Expect = 6e-27, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 4/124 (3%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 E +P PGVY +G LY+G A NL++R++ Y++ N+ I H++ Q NI Sbjct: 246 ENVPSSPGVYIFRSHSGEPLYIGTAVNLRRRLRQYINGNDKRRLIPHLLPQTRNIDTIEC 305 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYI--LITDKHKIPALYKHRDSSTIQGSY 121 EA + EA +I + +P FN ++ + + +I H + RD + Sbjct: 306 AHGFEAEVREATLIAKFRPPFNRRSKEPRQYWWISGARPRAHDVSRATISRDPRSPNA-- 363 Query: 122 FGPF 125 GPF Sbjct: 364 LGPF 367 >gi|327540726|gb|EGF27295.1| excinuclease ABC subunit C [Rhodopirellula baltica WH47] Length = 494 Score = 127 bits (319), Expect = 6e-27, Method: Composition-based stats. Identities = 80/359 (22%), Positives = 140/359 (38%), Gaps = 23/359 (6%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 P PG+Y M D G ++YVGK+ +L+ R+ SY + +I I++ ++ Sbjct: 141 PPVPGIYGMFDRHGELIYVGKSRSLRHRLLSYFGEAARKEKGGRIIENSRAIQWETQPSD 200 Query: 67 VEALLLEANMIKRLKPRFNILLRDDKSFP-YILITDK--HKIPALYKHRDSSTIQGSYFG 123 A L E +I+R PRFN+ + P Y+ + K +T + G Sbjct: 201 FAAQLRELQLIRRWTPRFNVQGVPHRHRPVYLCLGRKPAETF--FLASSPPATDCVAIEG 258 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSV----------FRHRTRP-CLLFQIKRCSGPCT 172 PF + + +++L +TF LR C+ F RP CL +I C GPC Sbjct: 259 PFYGAERMRSVVDALNKTFQLRDCSQQTVFQYQDQLSLFELSPRPGCLRLEIGTCLGPCA 318 Query: 173 GEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQ 232 S ++Y++ V+ A+ FL G N + M A+ + YE A RD L +L + Sbjct: 319 AACSRDEYVQRVNAAQSFLDGFNDEPLVAVRELMESASANQQYELASRARDTLKSLQYAS 378 Query: 233 NHNDSIYNRMDCFS--LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290 + + FS AC G+ + D L Sbjct: 379 RKLGHLADARRDFSFVYAATGYDACSIWYLVRSGEIIDVASAPKDRDQY-----QLLRPT 433 Query: 291 RQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH 349 + + + + + + + S+F+++ ++K T +G R+ + A Sbjct: 434 LKKWQSLLGSRHQRVRVDQPHSVAVVASWFRKHRGELKQTFQPEGAGRRYHRLSHHRAD 492 >gi|163756168|ref|ZP_02163283.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1] gi|161323780|gb|EDP95114.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1] Length = 454 Score = 127 bits (318), Expect = 7e-27, Method: Composition-based stats. Identities = 53/278 (19%), Positives = 99/278 (35%), Gaps = 26/278 (9%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFT 61 E +P GVY M + G ++Y+GK+ N++KR+ + NN + +I Q+ + F Sbjct: 190 LENLPSATGVYYMHNAKGEIIYIGKSKNIKKRVNQHFTGKNNKSKKIQK---QVAAVTFE 246 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDD------KSFP----YILITDKHKIPALYKH 111 T +E+ ALL E+ IKR +P +N R + S+ YI + + K Sbjct: 247 RTGSELVALLKESEEIKRKRPIYNRAQRKNIFQFAMGSYVDENGYIGL-------RIEKA 299 Query: 112 RDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPC 171 + F ++ + + L F L + + +++ C + IK C G C Sbjct: 300 DGRKK----HITTFTNMSQAKHVMFKLTEDFKLCQKINELHSSKSQ-CFQYTIKECDGAC 354 Query: 172 TGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHI 231 + Y + V EA S N N+ + E+ +L++ Sbjct: 355 INQEDVTSYNKRVQEAIDRYSYANKNMLIIDKGRHHDERSAILIENGQYKGFGFYSLNYQ 414 Query: 232 QNHNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGT 269 + + + + Sbjct: 415 ITKREVLEKIITPMQNNRDVQHIIQSHLRRKNRFKIIH 452 >gi|32474695|ref|NP_867689.1| exinuclease ABC subunit C [Rhodopirellula baltica SH 1] gi|32445234|emb|CAD75236.1| exinuclease ABC subunit C [Rhodopirellula baltica SH 1] Length = 494 Score = 127 bits (318), Expect = 7e-27, Method: Composition-based stats. Identities = 81/359 (22%), Positives = 140/359 (38%), Gaps = 23/359 (6%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 P PG+Y M D G ++YVGK+ +L+ R+ SY + +I I++ ++ Sbjct: 141 PPVPGIYGMFDRHGELIYVGKSRSLRHRLLSYFGEAARKEKGGRIIENSRAIQWETQPSD 200 Query: 67 VEALLLEANMIKRLKPRFNILLRDDKSFP-YILITDK--HKIPALYKHRDSSTIQGSYFG 123 A L E +I+R PRFN+ + P Y+ + K +T + G Sbjct: 201 FAAQLRELQLIRRWTPRFNVQGVPHRHRPVYLCLGRKPAETF--FLASSPPATDCVAIEG 258 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSV----------FRHRTRP-CLLFQIKRCSGPCT 172 PF D + +++L +TF LR C+ F RP CL +I C GPC Sbjct: 259 PFYGADRMRSVVDALNKTFQLRDCSQQTVFQYQDQLSLFELSPRPGCLRLEIGTCLGPCA 318 Query: 173 GEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQ 232 S ++Y++ V+ A+ FL G N + M A+ + YE A RD L +L + Sbjct: 319 AACSRDEYVQRVNAAQSFLDGFNDEPLVAVRELMESASANQQYELASRARDTLKSLQYAS 378 Query: 233 NHNDSIYNRMDCFS--LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290 + + FS AC G+ + D L Sbjct: 379 RKLGHLADARRDFSFVYAATGYDACSIWYLVRSGEIIDVASAPKDRDQY-----QLLRPT 433 Query: 291 RQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH 349 + + + + + + + S+F+++ ++K T +G R+ + A Sbjct: 434 LKKWQSLLGSRHQRVRVDQPHSVAVVASWFRKHRGELKQTFQPEGAGRRYHRLSHHRAD 492 >gi|187478089|ref|YP_786113.1| excinuclease [Bordetella avium 197N] gi|115422675|emb|CAJ49202.1| excinuclease [Bordetella avium 197N] Length = 301 Score = 127 bits (318), Expect = 8e-27, Method: Composition-based stats. Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 8/194 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P GVY A LY+GK+ +++ R S++ T M+ Q+ + Sbjct: 17 ARTLPRSTGVYLYFGEATLPLYIGKSVDMRGRFLSHLR----TPAEAAMMRQVRRVDCIE 72 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITD---KHKIPALY-KHRDSSTIQ 118 T E+ ALLLEA++IK+ P FN LR + + + P + + Sbjct: 73 TAGELGALLLEASLIKQRMPLFNQRLRRTRRLHVLRLASLACGGLQPRIEGLTGTPLECE 132 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 + FG F S A + + SL + L + R +R C Q+ RC G C G + Sbjct: 133 AARFGLFKSRSAAVEHLRSLAQAHELCLGLLGIERMGSRGCFGLQLGRCRGVCVGREPRQ 192 Query: 179 KYMEFVHEAKKFLS 192 + + + EA L Sbjct: 193 THDQRLQEALDALR 206 >gi|317492195|ref|ZP_07950625.1| GIY-YIG catalytic domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919900|gb|EFV41229.1| GIY-YIG catalytic domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 291 Score = 126 bits (317), Expect = 1e-26, Method: Composition-based stats. Identities = 48/193 (24%), Positives = 87/193 (45%), Gaps = 15/193 (7%) Query: 6 MPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY + LY+GK+ N++ R+ S+ + N ++ +I+ Sbjct: 35 LPAKPGVYIFHGTSKTMPLYIGKSVNIRSRVMSHFRNKNE----AKLLHLTTHIKHIEMA 90 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPA----LYKHRDSSTIQGS 120 E+ ALL EA +IK KP FN LR K + + P +Y + + Sbjct: 91 GELGALLTEARLIKEQKPLFNKRLRHAKQLCSLSLQ-----PRGVEIVYAGDTHFSHKAQ 145 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179 FG F++ + +T+ ++ L + R + R C + +KRC+G C G+ S E+ Sbjct: 146 LFGLFSNKSSALETLRAVADQQRLCYGVLGLERLAQGRSCFRYSLKRCAGACCGKESLEE 205 Query: 180 YMEFVHEAKKFLS 192 + + +A + + Sbjct: 206 HQLRLEQAMESIR 218 >gi|323253652|gb|EGA37480.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] Length = 83 Score = 126 bits (317), Expect = 1e-26, Method: Composition-based stats. Identities = 32/78 (41%), Positives = 51/78 (65%), Gaps = 1/78 (1%) Query: 528 YFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586 + IQ +RDE+H AI HRK+R K S L+ I G+GP R+++LL+ G ++ + +S Sbjct: 1 HVIQHIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASV 60 Query: 587 ETLASIEGISKKIACKIY 604 E +A + GIS+ +A KI+ Sbjct: 61 EEIAKVPGISQGLAEKIF 78 >gi|21231864|ref|NP_637781.1| nucleotide excision repair endonuclease [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768008|ref|YP_242770.1| nucleotide excision repair endonuclease [Xanthomonas campestris pv. campestris str. 8004] gi|21113585|gb|AAM41705.1| excinuclease ABC subunit C homolog [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573340|gb|AAY48750.1| excinuclease ABC subunit C homolog [Xanthomonas campestris pv. campestris str. 8004] Length = 285 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 85/206 (41%), Gaps = 33/206 (16%) Query: 2 SSEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + +P PGVY + LY+GK+ +L+ R+ + + ++ Q +I+ Sbjct: 26 ELDTLPATPGVYLFHGQSSTLPLYIGKSIHLRNRVMDHFRNAAE----ASLLRQTRSIQV 81 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPA---LYKHRDSSTI 117 ++ A LLE+ +IK L+P +N LR +IP + +R +I Sbjct: 82 IEMAGDIGAQLLESQLIKTLRPLYNQKLR--------------RIPRQFSIRLYRGEVSI 127 Query: 118 QGS----------YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKR 166 + S +G ++S A ++T+ L L + R RPC +KR Sbjct: 128 EHSGEIDPAAAPWLYGLYSSPRAAKETLRRLADQHHLCYGLLGLERLQAGRPCFRAMLKR 187 Query: 167 CSGPCTGEISSEKYMEFVHEAKKFLS 192 CSG C G + + E + + L Sbjct: 188 CSGACHGAEPLDAHEERLRSVLQHLE 213 >gi|226945002|ref|YP_002800075.1| nucleotide excision repair endonuclease [Azotobacter vinelandii DJ] gi|226719929|gb|ACO79100.1| Excinuclease ABC protein, subunit C [Azotobacter vinelandii DJ] Length = 282 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 49/191 (25%), Positives = 77/191 (40%), Gaps = 11/191 (5%) Query: 5 QMPECPGVYQML-DIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 MP+ PGVY D LY+GK+ +++ R+ +++ T ++ Q I T Sbjct: 26 SMPKAPGVYLFYGDSDSLPLYIGKSVDIRARLLAHLR----TPEEARLLRQTRRIEHIRT 81 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS-YF 122 E+ ALLLE+ +IK L+P +N LR + I + D + + Sbjct: 82 AGEIGALLLESRLIKELQPLYNKRLRCQRRLYSIRLADG----RPEVVEAVPPDREQALY 137 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRH-RTRPCLLFQIKRCSGPCTGEISSEKYM 181 G F S + + + L + RH R C QI RC+G C G S E + Sbjct: 138 GLFRSRRVAGERLLEMADRHRLCLGLLGLERHEPGRACFRTQIGRCAGACAGRESHEAHA 197 Query: 182 EFVHEAKKFLS 192 + A Sbjct: 198 ARLLAALTEWQ 208 >gi|126661817|ref|ZP_01732816.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38] gi|126625196|gb|EAZ95885.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38] Length = 453 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 53/248 (21%), Positives = 107/248 (43%), Gaps = 6/248 (2%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 E +P G+Y + + G ++Y+GK+ N++KR+ + +++ M + + F T Sbjct: 191 ESLPSKTGIYYIHNEKGDLIYIGKSKNIKKRVNQHFTGT--SNKSKKMQRDVYAVTFEET 248 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKS-FPYILITDKHKIPALYKHRDSSTIQGSYF 122 +E+ ALL E+ IK KP +N+ R KS F Y L + K++ + + + + Sbjct: 249 GSELIALLKESEEIKINKPIYNVAQR--KSIFQYALYSHKNEQGYIAFTIEKADGRKKEI 306 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 F+++ + + + L + ++ + C ++IK C+G C E E+Y E Sbjct: 307 TSFSTLQEGRNFLFKITEKYNLCQKINGLYSTKN-ACFQYKIKECNGACIEEEKPEQYNE 365 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242 V E + S N+N+ E+ I L++ ++ D + N + Sbjct: 366 RVKEFIEESSFENNNMIILDRGRTFDERSAVLIENGIYKGYCFYELNYQISNIDILKNIL 425 Query: 243 DCFSLYHN 250 + Sbjct: 426 IPMQNNRD 433 >gi|126031195|pdb|2NRR|A Chain A, Crystal Structure Of The C-Terminal Rnaseh Endonuclase Domain Of Uvrc Length = 159 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 31/189 (16%) Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422 L++ K + P RIE D SH+ G V +VV + K YR++ + + Sbjct: 1 MEALEELMKLLNMKDFPYRIEGIDISHLQGKYTVASLVVFEDGFPKKGDYRRYKIEQDH- 59 Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482 DD +R V++RR+S+ P+++ +DGG GQ++AA Sbjct: 60 --PDDYESIRTVVKRRYSK-------------------HPLPNLLFVDGGIGQVNAAIEA 98 Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542 LK++ + ++ +AK + V + + L P+L + ++RDE HRFA+ Sbjct: 99 LKEIGKDC--PVVGLAKKEET-------VVFENREIHLPHDHPVLRLLVQIRDETHRFAV 149 Query: 543 TTHRKRRKK 551 + HRKRR+K Sbjct: 150 SYHRKRREK 158 >gi|254480459|ref|ZP_05093706.1| GIY-YIG catalytic domain protein [marine gamma proteobacterium HTCC2148] gi|214039042|gb|EEB79702.1| GIY-YIG catalytic domain protein [marine gamma proteobacterium HTCC2148] Length = 282 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 54/180 (30%), Positives = 82/180 (45%), Gaps = 4/180 (2%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 MP+CPG+Y+ LD G LY+GK+ N++ R+K+++ R M+S+ I T Sbjct: 1 MPDCPGIYRFLDRNGCALYIGKSINIRSRVKTHLAEARGLSRKHRMLSETKCIDVRPTAG 60 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKS-FPYILITDKHKI--PALYKHRDSSTIQGSYF 122 E+ ALLLE + IK+ P FN R K + Y L + + + P L + + + Sbjct: 61 EIGALLLENDAIKKQAPAFNRRQRSIKKMWSYALTSGRGEFCVPTLQSYSMHKPEILASY 120 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 G + S +K + R L PC FQI RC G C S+E + Sbjct: 121 GAYTSPSRAKKALEQATRDHGLCPRILG-LEAGKGPCFNFQIGRCRGACADFESAESHNR 179 >gi|323186921|gb|EFZ72239.1| hypothetical protein ECRN5871_4803 [Escherichia coli RN587/1] Length = 259 Score = 125 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 91/246 (36%), Gaps = 19/246 (7%) Query: 13 YQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALL 71 Y + LY+GK+ N++ R+ S++ + + M+ Q I + T E+ ALL Sbjct: 2 YLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALL 57 Query: 72 LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASV 128 LEA +IK +P FN LR ++ + +++K + FG FA+ Sbjct: 58 LEARLIKEQQPLFNKRLRRNRQLCALQLSEK----RVDVVYAKEVDFSRAPNLFGLFANR 113 Query: 129 DAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 A + + ++ L R R C +KRC+G C G+ S + + + ++ Sbjct: 114 RAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHDDHALRLRQS 173 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSL 247 + L A ++ E H + N + + Sbjct: 174 LERLRVVCWPW------KGAVALKEQHPEMTQYHIIQNWLWLGAVNSLKEATTLIRAPAG 227 Query: 248 YHNKNL 253 + + Sbjct: 228 FDHDGY 233 >gi|21243291|ref|NP_642873.1| nucleotide excision repair endonuclease [Xanthomonas axonopodis pv. citri str. 306] gi|21108830|gb|AAM37409.1| excinuclease ABC subunit C homolog [Xanthomonas axonopodis pv. citri str. 306] Length = 284 Score = 125 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 44/193 (22%), Positives = 75/193 (38%), Gaps = 13/193 (6%) Query: 5 QMPECPGVYQMLDIA-GRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +P GVY G LY+GK+ NL+ R+ + T R ++ Q I Sbjct: 28 TLPTTAGVYLFHGKDSGLPLYIGKSINLRMRVMDHFR----TPREASLLRQTRRISVFEM 83 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 ++ A LLE+ +IK ++P +N LR I + + + Sbjct: 84 AGDLGAQLLESQLIKSMRPLYNQKLRRVPRQFSIRLYCGE----VSIVHSAERDPAVTPW 139 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179 +G ++S A ++ + L L + R RPC ++RC+G C G S Sbjct: 140 LYGLYSSPRAAKEALRRLADRDRLCYGLLGLERATDGRPCFRAMLERCAGACHGAESLGD 199 Query: 180 YMEFVHEAKKFLS 192 + + A + L Sbjct: 200 HETRLRAALQHLE 212 >gi|309788808|ref|ZP_07683403.1| excinuclease cho [Shigella dysenteriae 1617] gi|308923079|gb|EFP68591.1| excinuclease cho [Shigella dysenteriae 1617] Length = 252 Score = 125 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 13/173 (7%) Query: 13 YQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALL 71 Y + LY+GK+ N++ R++S++ + M+ Q I + T E+ ALL Sbjct: 2 YLFHGESDTMPLYIGKSVNIRSRVRSHLRPPDE----AAMLRQSRRISWICTAGEIGALL 57 Query: 72 LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASV 128 LEA +IK +P FN LR ++ + + +K + FG FA+ Sbjct: 58 LEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANR 113 Query: 129 DAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 A + + S+ L R R C +KRC+G C G+ S E++ Sbjct: 114 RAALQALQSIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEH 166 >gi|320184221|gb|EFW59036.1| nucleotide excision repair endonuclease [Shigella flexneri CDC 796-83] gi|332096304|gb|EGJ01305.1| hypothetical protein SB359474_1503 [Shigella boydii 3594-74] Length = 259 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 92/246 (37%), Gaps = 19/246 (7%) Query: 13 YQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALL 71 Y + LY+GK+ N++ R+ S++ + + M+ Q I + T E+ ALL Sbjct: 2 YLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALL 57 Query: 72 LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASV 128 LEA +IK +P FN LR ++ + + +K + FG FA+ Sbjct: 58 LEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANR 113 Query: 129 DAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 A + + ++ L R R C +KRC+G C G+ S E++ + ++ Sbjct: 114 RAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQS 173 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSL 247 + L A ++ E H + N + + + Sbjct: 174 LERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEDATTLIRTPAG 227 Query: 248 YHNKNL 253 + + Sbjct: 228 FDHDGY 233 >gi|323153015|gb|EFZ39284.1| excinuclease cho [Escherichia coli EPECa14] gi|323180520|gb|EFZ66065.1| hypothetical protein ECOK1180_0509 [Escherichia coli 1180] Length = 259 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 50/246 (20%), Positives = 92/246 (37%), Gaps = 19/246 (7%) Query: 13 YQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALL 71 Y + LY+GK+ N++ R+ S++ + + M+ Q I + T E+ ALL Sbjct: 2 YLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALL 57 Query: 72 LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASV 128 LEA +IK +P FN LR ++ + + +K + FG FA+ Sbjct: 58 LEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANR 113 Query: 129 DAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 A + + S+ L R R C +KRC+G C G+ S E++ + ++ Sbjct: 114 RAALQALQSIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQS 173 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSL 247 + L A ++ E H + N + + + Sbjct: 174 LERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEDATTLIRTPAG 227 Query: 248 YHNKNL 253 + + Sbjct: 228 FDHDGY 233 >gi|312969769|ref|ZP_07783952.1| excinuclease cho [Escherichia coli 1827-70] gi|310338054|gb|EFQ03143.1| excinuclease cho [Escherichia coli 1827-70] gi|323169376|gb|EFZ55052.1| excinuclease cho [Shigella sonnei 53G] Length = 259 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 92/246 (37%), Gaps = 19/246 (7%) Query: 13 YQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALL 71 Y + LY+GK+ N++ R+ S++ + + M+ Q I + T E+ ALL Sbjct: 2 YLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALL 57 Query: 72 LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASV 128 LEA +IK +P FN LR ++ + + +K + FG FA+ Sbjct: 58 LEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANR 113 Query: 129 DAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 A + + ++ L R R C +KRC+G C G+ S E++ + ++ Sbjct: 114 RAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQS 173 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSL 247 + L A ++ E H + N + + + Sbjct: 174 LERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEATTLIRTPAG 227 Query: 248 YHNKNL 253 + + Sbjct: 228 FDHDGY 233 >gi|331683248|ref|ZP_08383849.1| excinuclease cho [Escherichia coli H299] gi|331079463|gb|EGI50660.1| excinuclease cho [Escherichia coli H299] Length = 259 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 93/246 (37%), Gaps = 19/246 (7%) Query: 13 YQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALL 71 Y + LY+GK+ N++ R+ S++ + + M+ Q I + T E+ ALL Sbjct: 2 YLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALL 57 Query: 72 LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASV 128 LEA +IK +P FN LR ++ + + +K + FG FA+ Sbjct: 58 LEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANR 113 Query: 129 DAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 A + + S+ L R R C +KRC+G C G+ S E++ + ++ Sbjct: 114 RAALQALQSIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQS 173 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSL 247 + L N A ++ E H + N + + + Sbjct: 174 LERLRVVCWPW------NGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEATTLIRAPAG 227 Query: 248 YHNKNL 253 + + Sbjct: 228 FDHDGY 233 >gi|323158460|gb|EFZ44476.1| hypothetical protein ECE128010_5226 [Escherichia coli E128010] gi|332758631|gb|EGJ88950.1| hypothetical protein SF274771_1818 [Shigella flexneri 2747-71] gi|332759197|gb|EGJ89506.1| hypothetical protein SFK671_1868 [Shigella flexneri K-671] gi|332767188|gb|EGJ97383.1| endonuclease of nucleotide excision repair [Shigella flexneri 2930-71] gi|333004249|gb|EGK23780.1| hypothetical protein SFK218_2330 [Shigella flexneri K-218] Length = 259 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 50/246 (20%), Positives = 92/246 (37%), Gaps = 19/246 (7%) Query: 13 YQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALL 71 Y + LY+GK+ N++ R+ S++ + + M+ Q I + T E+ ALL Sbjct: 2 YLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALL 57 Query: 72 LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASV 128 LEA +IK +P FN LR ++ + + +K + FG FA+ Sbjct: 58 LEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANR 113 Query: 129 DAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 A + + S+ L R R C +KRC+G C G+ S E++ + ++ Sbjct: 114 RAALQALQSIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQS 173 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSL 247 + L A ++ E H + N + + + Sbjct: 174 LERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEATTLIRTPAG 227 Query: 248 YHNKNL 253 + + Sbjct: 228 FDHDGY 233 >gi|289524518|ref|ZP_06441372.1| excinuclease ABC, C subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502242|gb|EFD23406.1| excinuclease ABC, C subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 258 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 52/195 (26%), Positives = 87/195 (44%), Gaps = 22/195 (11%) Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408 S + + L+ + + + RIE D SH+ G G VV + Sbjct: 86 QISFALRDPLDKEIWKALERLQEILGIAYPLWRIEGCDISHLSGRETYGVFVVFEQGMPN 145 Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468 + YR++ + V+ DD + ++ RR+S LI+ P +++ Sbjct: 146 PSLYRRYVIKT--VEGIDDFRSIEEIVRRRYSSLIE--------------KNMPLPQLLL 189 Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 +DGG QLS A L +L +EN I +++AK + E + L L + DP L Sbjct: 190 VDGGALQLSFALKALNQLGIEN-IYAVALAKEEE-----ELYLPDSRIPLKLPLDDPGLN 243 Query: 529 FIQRLRDEAHRFAIT 543 ++R+RDEAHRFA++ Sbjct: 244 LLRRIRDEAHRFALS 258 Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 42/84 (50%) Query: 155 RTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKED 214 ++RPCL + + +C GPC G + +Y E V + FL G L E + + MN+A Sbjct: 6 QSRPCLRYNMGKCLGPCAGLCTQREYQELVDDVILFLRGQTSALVESLRKKMNEAVESLA 65 Query: 215 YESAIIHRDRLAALSHIQNHNDSI 238 +E A +RD + AL + S Sbjct: 66 FEKAAFYRDAIRALWRLSRQQISF 89 >gi|149376092|ref|ZP_01893858.1| hypothetical protein MDG893_03900 [Marinobacter algicola DG893] gi|149359729|gb|EDM48187.1| hypothetical protein MDG893_03900 [Marinobacter algicola DG893] Length = 483 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 55/211 (26%), Positives = 87/211 (41%), Gaps = 2/211 (0%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P PGVY+ +LYVGK+ N+ +R+ S+ ++++ R M + + +T Sbjct: 202 LQNLPRGPGVYRFYGENDVLLYVGKSTNIAQRVASHFSGDHNSSRGIRMSESLRRVDWTE 261 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILIT-DKHKIPALYKHRDSSTIQ-GS 120 T E+ ALLLE IK+LKP FN R K+ I +T + + + G Sbjct: 262 TAGELGALLLELKQIKQLKPLFNRRSRAAKNLVSIELTENSSGYLQARLVWEIEPHRLGD 321 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFG F S EK ++ + L + + PC + RC G C G +Y Sbjct: 322 YFGLFRSKKDAEKALSGIAAKNDLCNKLLGLEPDGDGPCFQRSLGRCKGACDGGEDVVRY 381 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATL 211 A L K + + A Sbjct: 382 NLRTQIAFHGLRLKTWPWKGPVGVVEHNART 412 >gi|148927599|ref|ZP_01811068.1| Nuclease subunit of the excinuclease complex-like protein [candidate division TM7 genomosp. GTL1] gi|147887057|gb|EDK72556.1| Nuclease subunit of the excinuclease complex-like protein [candidate division TM7 genomosp. GTL1] Length = 108 Score = 124 bits (312), Expect = 4e-26, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 63/109 (57%), Gaps = 5/109 (4%) Query: 505 AGMEKFFVKKGE--ALVLNMRDPILYFIQRLRDEAHRFAITTHRK-RRKKAAYSPLDEIN 561 A ++ ++ + L L I+ +QR+RDE+HRFA++ H +R A S LDEI Sbjct: 2 ASIDILIIESEDFYTLRLPHDSHIIKLLQRIRDESHRFAVSYHSNLKRTGATKSILDEIP 61 Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 GIGP ++ L+ +FG+V+ + ++PE LA++ G +K A + H + Sbjct: 62 GIGPATRKKLVTAFGSVRGVKTAAPEQLAAVLG--EKKAKLVTAWLHNS 108 >gi|300938924|ref|ZP_07153625.1| GIY-YIG catalytic domain protein [Escherichia coli MS 21-1] gi|300456123|gb|EFK19616.1| GIY-YIG catalytic domain protein [Escherichia coli MS 21-1] Length = 259 Score = 124 bits (312), Expect = 4e-26, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 90/246 (36%), Gaps = 19/246 (7%) Query: 13 YQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALL 71 Y + LY+GK+ N++ R+ S++ + + M+ Q I + T E+ ALL Sbjct: 2 YLFHGESDTTPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALL 57 Query: 72 LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASV 128 LEA +IK +P FN LR ++ + + +K + FG FA+ Sbjct: 58 LEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANR 113 Query: 129 DAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 A + + ++ L R R C +KRC+G C G+ + + + ++ Sbjct: 114 RAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKEGHDDHALRLRQS 173 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSL 247 + L A ++ E H + N + + + Sbjct: 174 LERLRVVCWPW------KGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEATMLIRTPAG 227 Query: 248 YHNKNL 253 + + Sbjct: 228 FDHDGY 233 >gi|289165197|ref|YP_003455335.1| excinuclease abc, subunit c [Legionella longbeachae NSW150] gi|288858370|emb|CBJ12238.1| putative excinuclease abc, subunit c [Legionella longbeachae NSW150] Length = 518 Score = 124 bits (312), Expect = 4e-26, Method: Composition-based stats. Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 1/88 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63 ++ PG+Y+ML G +LY+GKA +L+ R+ SY N R M++Q+ +I Sbjct: 219 KLSNKPGIYRMLAEDGTILYIGKATSLKARVNSYFRGTKNRDRRKLEMLTQVWDIETIEC 278 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDD 91 T +EA LLE++ IK+ P +N+LL+ D Sbjct: 279 DTPLEAALLESDEIKKWTPPYNVLLKSD 306 >gi|333006846|gb|EGK26343.1| hypothetical protein SFK272_2156 [Shigella flexneri K-272] gi|333018763|gb|EGK38056.1| hypothetical protein SFK227_1834 [Shigella flexneri K-227] Length = 259 Score = 124 bits (312), Expect = 4e-26, Method: Composition-based stats. Identities = 50/250 (20%), Positives = 93/250 (37%), Gaps = 19/250 (7%) Query: 13 YQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALL 71 Y + LY+GK+ N++ R+ S++ + + M+ Q I + T E+ ALL Sbjct: 2 YLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALL 57 Query: 72 LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASV 128 LEA +IK +P FN LR ++ + + +K + FG FA+ Sbjct: 58 LEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANR 113 Query: 129 DAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 A + + S+ L R R C +KRC+G C G+ S E++ + ++ Sbjct: 114 RAALQALQSIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQS 173 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSL 247 + L A ++ E H + N + + + Sbjct: 174 LERLRVVCWPW------QGAVALKEQPPEMTQYHIIQNWLWLGAVNSLEEATTLIRTPAG 227 Query: 248 YHNKNLACIQ 257 + + + Sbjct: 228 FEHDGYKMLC 237 >gi|227885834|ref|ZP_04003639.1| nucleotide excision repair endonuclease [Escherichia coli 83972] gi|227837407|gb|EEJ47873.1| nucleotide excision repair endonuclease [Escherichia coli 83972] gi|315290504|gb|EFU49878.1| GIY-YIG catalytic domain protein [Escherichia coli MS 153-1] gi|330911545|gb|EGH40055.1| excinuclease cho (excinuclease ABC alternative C subunit) [Escherichia coli AA86] Length = 259 Score = 124 bits (311), Expect = 4e-26, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 90/246 (36%), Gaps = 19/246 (7%) Query: 13 YQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALL 71 Y + LY+GK+ N++ R+ S++ + + M+ Q I + T E+ ALL Sbjct: 2 YLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALL 57 Query: 72 LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASV 128 LEA +IK +P FN LR ++ + + +K + FG FA+ Sbjct: 58 LEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANR 113 Query: 129 DAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 A + + ++ L R R C +KRC+G C G+ S + + + ++ Sbjct: 114 RAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHDDHALRLRQS 173 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSL 247 + L A ++ E H + N + + Sbjct: 174 LERLRVVCWPW------KGAVALKEQHPEMTQYHIIQNWLWLGAVNSLKEATTLIRAPAG 227 Query: 248 YHNKNL 253 + + Sbjct: 228 FDHDGY 233 >gi|320194551|gb|EFW69182.1| nucleotide excision repair endonuclease [Escherichia coli WV_060327] Length = 259 Score = 124 bits (311), Expect = 4e-26, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 91/246 (36%), Gaps = 19/246 (7%) Query: 13 YQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALL 71 Y + LY+GK+ N++ R+ S++ + + M+ Q I + T E+ ALL Sbjct: 2 YLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALL 57 Query: 72 LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASV 128 LEA +IK +P FN LR ++ + +++K + FG FA+ Sbjct: 58 LEARLIKEQQPLFNKRLRRNRQLCALQLSEK----RVDVVYAKEVDFSRAPNLFGLFATR 113 Query: 129 DAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 A + + ++ L R R C +KRC+G C G+ S + + + ++ Sbjct: 114 RAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHDDHALRLRQS 173 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSL 247 + L A ++ E H + N + + Sbjct: 174 LERLRVVCWPW------KGAVALKEQHPEMTQYHIIQNWLWLGAVNSLKEATTLIRAPAG 227 Query: 248 YHNKNL 253 + + Sbjct: 228 FDHDGY 233 >gi|331663221|ref|ZP_08364131.1| excinuclease cho [Escherichia coli TA143] gi|331059020|gb|EGI30997.1| excinuclease cho [Escherichia coli TA143] Length = 259 Score = 124 bits (310), Expect = 5e-26, Method: Composition-based stats. Identities = 50/246 (20%), Positives = 92/246 (37%), Gaps = 19/246 (7%) Query: 13 YQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALL 71 Y + LY+GK+ N++ R+ S++ + + M+ Q I + T E+ ALL Sbjct: 2 YLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALL 57 Query: 72 LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASV 128 LEA +IK +P FN LR ++ + + +K + FG FA+ Sbjct: 58 LEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRASNLFGLFANR 113 Query: 129 DAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187 A + + ++ L R R C +KRC+G C G+ S E++ + +A Sbjct: 114 RAALQALQTIADEQKLCYGLLGLEPLSRGRSCFRSALKRCAGACCGKESHEEHALRLRQA 173 Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSL 247 + L A ++ E H + N + + + Sbjct: 174 LERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEATTLIRTPAG 227 Query: 248 YHNKNL 253 + + Sbjct: 228 FDHDGY 233 >gi|163754237|ref|ZP_02161360.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1] gi|161326451|gb|EDP97777.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1] Length = 457 Score = 124 bits (310), Expect = 6e-26, Method: Composition-based stats. Identities = 46/207 (22%), Positives = 82/207 (39%), Gaps = 28/207 (13%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +P PG+Y D G+++YVGKA N+QKR+ + + N + + + + +I + ++ Sbjct: 195 DDLPAKPGIYYFKDKKGKIIYVGKAKNIQKRVLGHFY--NKSKKELDLCRETADIDYELS 252 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +E+ ALL+E IK PR+N+ + T K + + Sbjct: 253 GSELIALLMEDAAIKHHYPRYNVASKR---------TPK----RFAIFEYADRRGVRHLA 299 Query: 124 ------------PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPC 171 F ++ + L F L + + C F I+ C G C Sbjct: 300 INDAKIIQDPLIVFYNIRDCRTYLERLCMQFDLCP-KYCHLQENVKECSHFMIQSCQGIC 358 Query: 172 TGEISSEKYMEFVHEAKKFLSGGNHNL 198 E + E Y E V +A + N+ Sbjct: 359 KSEEAIETYNERVQQAIAHSKESSQNV 385 >gi|319952129|ref|YP_004163396.1| DNA polymerase iii, epsilon subunit [Cellulophaga algicola DSM 14237] gi|319420789|gb|ADV47898.1| DNA polymerase III, epsilon subunit [Cellulophaga algicola DSM 14237] Length = 457 Score = 123 bits (309), Expect = 8e-26, Method: Composition-based stats. Identities = 43/179 (24%), Positives = 85/179 (47%), Gaps = 6/179 (3%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +P PG+Y + G+++YVGKA +++KR+ S+ + + T + M + + I F ++ Sbjct: 193 DNLPNTPGIYFFKNAKGKIIYVGKAIDIKKRVLSHFY--DKTTKEIAMCQETSAIDFELS 250 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSYF 122 +E+ ALL+E++ IK P +N + K P+ + T + + ++ ++ S++ Sbjct: 251 GSEIMALLMESDAIKHHYPDYNRAQKK-KVQPFGIFTYEDRNGIMHLAWNTQKMAPNSFY 309 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 + S A + L +T+ L + C + I C G C G E Y Sbjct: 310 TLY-SKTASRTFLQELCKTYKLCP-KFCHLQENVPQCSHYDILECEGICRGTEEIEAYN 366 >gi|322830900|ref|YP_004210927.1| Excinuclease ABC C subunit domain protein [Rahnella sp. Y9602] gi|321166101|gb|ADW71800.1| Excinuclease ABC C subunit domain protein [Rahnella sp. Y9602] Length = 283 Score = 123 bits (309), Expect = 8e-26, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 87/232 (37%), Gaps = 26/232 (11%) Query: 3 SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P GVY LY+GK+ N++ R+ S+ + ++ +I F Sbjct: 23 LENLPNGSGVYIFYGDDNAFPLYIGKSVNIRSRVMSHFRNPAE----AKLLHMTRDIEFI 78 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILI---------TDKHKIPALYKHR 112 T EV ALLLE+++IK +P FN LR + I + +D Sbjct: 79 ETIGEVGALLLESDLIKTRRPLFNKRLRTARKLCSIRLQGLTASIVFSDDVDF------- 131 Query: 113 DSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPC 171 + FG F + + + I + L A + + + R C F + +C+G C Sbjct: 132 ---SHSEDLFGLFKTKMSAVEKIRDIADQEKLCYGALGLEKLAKNRACFRFSLGKCAGVC 188 Query: 172 TGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRD 223 G+ + + + + A L + +I +A DY Sbjct: 189 CGKETPDVHQARLRNALSTLRIRSWPYPGRI-AIAEEANGLTDYHVINHWFY 239 >gi|325925088|ref|ZP_08186508.1| Excinuclease Cho [Xanthomonas perforans 91-118] gi|325544504|gb|EGD15867.1| Excinuclease Cho [Xanthomonas perforans 91-118] Length = 263 Score = 123 bits (308), Expect = 9e-26, Method: Composition-based stats. Identities = 45/195 (23%), Positives = 75/195 (38%), Gaps = 13/195 (6%) Query: 3 SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P GVY LY+GK+ NL+ R+ + T R ++ Q I Sbjct: 5 LETLPTTAGVYLFHGQDSELPLYIGKSVNLRVRVMDHFR----TPREASLLRQTRRISVF 60 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121 ++ A LLE+ +IK ++P +N LR I + + + Sbjct: 61 EMAGDLGAQLLESQLIKSMRPLYNQKLRRVPRQFSIRLYCGD----VSIVHSAERDPAVI 116 Query: 122 ---FGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISS 177 +G ++S A ++ + L L + R RPC +KRC+G C G S Sbjct: 117 PWLYGLYSSPRAAQEALRRLADRDRLCYGLLGLERATDGRPCFRAMLKRCAGACHGAESL 176 Query: 178 EKYMEFVHEAKKFLS 192 + + A + L Sbjct: 177 GDHEMRLRAALEHLE 191 >gi|188991134|ref|YP_001903144.1| nucleotide excision repair endonuclease [Xanthomonas campestris pv. campestris str. B100] gi|167732894|emb|CAP51088.1| putative excinuclease [Xanthomonas campestris pv. campestris] Length = 256 Score = 123 bits (308), Expect = 9e-26, Method: Composition-based stats. Identities = 49/202 (24%), Positives = 84/202 (41%), Gaps = 33/202 (16%) Query: 6 MPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 MP PGVY + LY+GK+ +L+ R+ + + ++ Q +I+ Sbjct: 1 MPATPGVYLFHGQSSTLPLYIGKSIHLRNRVMDHFRNAAE----ASLLRQTRSIQVIEMA 56 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPA---LYKHRDSSTIQGS- 120 ++ A LLE+ +IK L+P +N LR +IP + +R +I+ S Sbjct: 57 GDIGAQLLESQLIKTLRPLYNQKLR--------------RIPRQFSIRLYRGEVSIEHSG 102 Query: 121 ---------YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGP 170 +G ++S A ++T+ L L + R RPC +KRCSG Sbjct: 103 EIDPAAAPWLYGLYSSPRAAKETLRRLADQHHLCYGLLGLERLQAGRPCFRAMLKRCSGA 162 Query: 171 CTGEISSEKYMEFVHEAKKFLS 192 C G + + E + + L Sbjct: 163 CHGAEPLDAHEERLRSVLQHLE 184 >gi|213646019|ref|ZP_03376072.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 168 Score = 123 bits (308), Expect = 1e-25, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 12/146 (8%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 EAPALPGVYIFHSESDTLPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQARRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120 E+ ALLLEA +IK +P FN LR ++ + ++++ + S Sbjct: 86 AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 141 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRS 146 FG FA+ A +++ +L L Sbjct: 142 LFGLFANRRAALQSLQNLADEQKLCY 167 >gi|86130357|ref|ZP_01048957.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134] gi|85819032|gb|EAQ40191.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134] Length = 466 Score = 122 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 45/213 (21%), Positives = 89/213 (41%), Gaps = 9/213 (4%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +++PE G+Y D AG+++YVGKA N++KR+ S+ + + + + + I + VT Sbjct: 200 QELPETAGIYLFKDRAGKIIYVGKAINIKKRVLSHFYDKKN--KEYLLGQETYQIDYEVT 257 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDD-KSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 E+ ALLLE+ I++ P+FN + ++ + ++ I L + + Sbjct: 258 GNELCALLLESEYIEQYFPKFNRAQKMPVSTYAIVSYENRKGILQLAVAKSKYRASAT-D 316 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 + A E+ + + C +++K C G C E + Y E Sbjct: 317 KVYTKAKATERLMELCDTYHLCARY--CGLQATFGQCSHYRLKGCKGVCNDEEAVADYNE 374 Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDY 215 VH+A N + + + + + Sbjct: 375 RVHQALAAYYSENET---YLIKERGRTEDETAF 404 >gi|284098032|ref|ZP_06385862.1| excinuclease ABC subunit C domain protein [Candidatus Poribacteria sp. WGA-A3] gi|283830580|gb|EFC34737.1| excinuclease ABC subunit C domain protein [Candidatus Poribacteria sp. WGA-A3] Length = 100 Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats. Identities = 30/86 (34%), Positives = 52/86 (60%), Gaps = 1/86 (1%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVT 63 +P PGVY +G++LY+GKA L+KR++SY+H +I +I ++R+ V Sbjct: 11 DVPSDPGVYFFRGTSGQILYIGKAKCLRKRVRSYLHKVKKRPSKIKRLIRWTTDVRYQVC 70 Query: 64 CTEVEALLLEANMIKRLKPRFNILLR 89 +E EAL LE+ +I+ +P +N ++ Sbjct: 71 RSEQEALFLESRLIQEYQPSYNTAMK 96 >gi|124002035|ref|ZP_01686889.1| DNA polymerase III, epsilon subunit [Microscilla marina ATCC 23134] gi|123992501|gb|EAY31846.1| DNA polymerase III, epsilon subunit [Microscilla marina ATCC 23134] Length = 463 Score = 121 bits (304), Expect = 3e-25, Method: Composition-based stats. Identities = 66/283 (23%), Positives = 119/283 (42%), Gaps = 16/283 (5%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +PE GVY + G ++Y+GK+ N++KR+ S+ N + + SQ+ I + +T Sbjct: 192 QALPEATGVYYFHNEEGDIIYIGKSINIKKRVGSHFTQNLNNRKSIDFKSQVAGISYELT 251 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHK--IPALYKHR---DSSTIQ 118 +E+ ALLLE++ IKR P+FN R + F I T H+ LY R + + Sbjct: 252 GSELLALLLESDEIKRHHPKFNRAQRRTRYFWGIY-TRHHRNGYLGLYAARLETEPNKTP 310 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 + G S + + S R + L +++ +T C +QIK+C G C GE + E Sbjct: 311 LTMCG---SGHTAREILYSKVREYQLCMKLCGLYQTKTS-CFDYQIKQCKGACIGEETPE 366 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 Y E V EA + + + + N+ E +I+ ++ + L D Sbjct: 367 DYNERVEEAIATFNRYSLRTFLVLGKGRNKN------EQSIVVIEKGSYLGFGYVDKDLT 420 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST 281 + Y + +G + + + + Sbjct: 421 IASFEEAKQYIKPYKDNLDVQKIIYGYLKQHKWSGVMEEKQEE 463 >gi|126665661|ref|ZP_01736642.1| hypothetical protein MELB17_03812 [Marinobacter sp. ELB17] gi|126629595|gb|EBA00212.1| hypothetical protein MELB17_03812 [Marinobacter sp. ELB17] Length = 483 Score = 121 bits (304), Expect = 3e-25, Method: Composition-based stats. Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 2/192 (1%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 +++P PGVY+ +LYVGK+ N+ +R+ S+ ++++ R + + + +T Sbjct: 202 LQELPRGPGVYRFYGENDALLYVGKSTNIAQRVASHFSGDHNSTRGVRISESLRRVDWTE 261 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILI-TDKHKIPALYKHRDSSTIQ-GS 120 T E+ ALLLE IK L+P FN R K+ I + T+ R+ + G Sbjct: 262 TAGELGALLLELKQIKGLRPLFNRRSRAAKNLVSIELTTNAQGYLQARLIREIDPGRLGD 321 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 Y+G F S E+ + S+ L + + + PC + RC G C G +Y Sbjct: 322 YYGLFRSKRDAERALASIAAKNELCNRLLGLEPEHSGPCFQRALGRCQGACEGREDPLRY 381 Query: 181 MEFVHEAKKFLS 192 + A L Sbjct: 382 NLRMQIAFHSLR 393 >gi|120436992|ref|YP_862678.1| exonuclease domain-containing protein [Gramella forsetii KT0803] gi|117579142|emb|CAL67611.1| protein containing exonuclease domain [Gramella forsetii KT0803] Length = 507 Score = 121 bits (304), Expect = 3e-25, Method: Composition-based stats. Identities = 60/291 (20%), Positives = 121/291 (41%), Gaps = 19/291 (6%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 E++P GVY D GR LY+GKA N++ RIKS+ ++R ++ + +I + +T Sbjct: 197 EKLPITTGVYFFKDKDGRPLYIGKAKNIKSRIKSHFQ--EKSNRKYKLMQETYSIDYELT 254 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDK--SFPYILITDKHK---IPALYKHRDSSTIQ 118 E+ ALL E+ +I + P++N + K S PY +T H I H++ Sbjct: 255 GNELLALLRESELILKFFPKYN---KAQKKVSRPY-TLTSYHNQKGIEQFALHKNKIA-P 309 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 S+ + +A++ + + + C ++I C G C GE+S E Sbjct: 310 VSWMKFYTREEAIKFMEFLCEEFQLCP--KYCGLQTGVKICDHYKITNCGGVCKGEVSKE 367 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 +Y V +A +++ + + + + + Y +++ + A +I +D Sbjct: 368 EYNARVEKAIEYIERYDDSCL-LLEKGRTREEKSFIY----LNKGKYAGYGYIGPSDDFN 422 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYF 289 + L KN + + + + T ++ E ++ + Sbjct: 423 HPEEFKNFLTPAKNSSYADRIVSRYLKIKRNFTKISLSNDEEEPEDLVEHT 473 >gi|305665063|ref|YP_003861350.1| DNA polymerase III subunit epsilon [Maribacter sp. HTCC2170] gi|88709815|gb|EAR02047.1| DNA polymerase III, epsilon subunit [Maribacter sp. HTCC2170] Length = 461 Score = 121 bits (304), Expect = 3e-25, Method: Composition-based stats. Identities = 42/195 (21%), Positives = 90/195 (46%), Gaps = 4/195 (2%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +P PG+Y + G+++YVGKA N++KR+ S+ + + + M + +I + ++ Sbjct: 193 DNLPTVPGIYYFKNEKGKIIYVGKAINIKKRVLSHFY--DKATKEIQMCEETTDIDYELS 250 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 +++ ALL+E+ IK P +N + + Y + T + + ++ + + + Sbjct: 251 GSDLVALLMESAAIKHHYPEYNRAQKRNVQR-YGIFTYEDRNGIMHLAFNKIKMAPNPVA 309 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183 + + + ++F L + C ++IK+C G C G +SE Y Sbjct: 310 ILYNTTDCRLYLEEICKSFSLC-AKFCHLQENVTTCSHYRIKQCDGICRGIETSEVYNNK 368 Query: 184 VHEAKKFLSGGNHNL 198 V+ A ++ N N Sbjct: 369 VNMALSYIKDSNENF 383 >gi|91216470|ref|ZP_01253436.1| DNA polymerase III, epsilon subunit [Psychroflexus torquis ATCC 700755] gi|91185264|gb|EAS71641.1| DNA polymerase III, epsilon subunit [Psychroflexus torquis ATCC 700755] Length = 454 Score = 121 bits (303), Expect = 4e-25, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 85/196 (43%), Gaps = 6/196 (3%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +P GVY + G ++YVGK+ +++KR + S+ + + +++ + T Sbjct: 191 DDLPNAVGVYYFSNKEGDIIYVGKSNDIKKRANQHFISDAQ--KSKQIQEYTSSVDYEKT 248 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDK-SFPYILITDKHKIPALYKHRDSSTIQGSYF 122 E+ ALL E IK+LKP++N L+ D + + D + L + S Y Sbjct: 249 GNELMALLKENQSIKKLKPKYNSALKKDLFTHGLYMFEDHNGYFNLTVSKLDSKKD--YV 306 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 F + + + T+ L + + + C + IK+C G C E + Y Sbjct: 307 TSFTNYQQGKAFLERALETYHLCQKLTGLHKTKE-ACFNYTIKKCDGACIKEEDAVSYNS 365 Query: 183 FVHEAKKFLSGGNHNL 198 V + +F + + N+ Sbjct: 366 RVVKLIEFYNYKDKNM 381 >gi|295133359|ref|YP_003584035.1| exonuclease domain-containing protein [Zunongwangia profunda SM-A87] gi|294981374|gb|ADF51839.1| exonuclease domain-containing protein [Zunongwangia profunda SM-A87] Length = 475 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 52/194 (26%), Positives = 89/194 (45%), Gaps = 14/194 (7%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 E++P GVY D G LY+GKA N++ RIKS+ ++R ++ +I + +T Sbjct: 197 EKLPSTTGVYFFKDKDGIPLYIGKAKNIKSRIKSHFQ--EKSNRKYSLMQATYSIDYELT 254 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDK--SFPYILITDKHK---IPALYKHRDSSTIQ 118 +E+ ALL E+++I + P+FN + K S PY +T H I H++ + Sbjct: 255 GSELLALLRESSLILKYFPKFN---KAQKKVSRPY-TLTSYHNQKGIEQFVIHKNKVS-P 309 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 S+ + +A++ Q + C ++I CSG C GEI Sbjct: 310 VSWMKFYTREEAIKFLEFLCQEFRLCP--KYCGLQAGVAECSHYKINDCSGMCRGEIEVT 367 Query: 179 KYMEFVHEAKKFLS 192 +Y + V A ++ Sbjct: 368 EYNQRVSRAIDYIH 381 >gi|163788571|ref|ZP_02183016.1| DNA polymerase III, epsilon subunit [Flavobacteriales bacterium ALC-1] gi|159875808|gb|EDP69867.1| DNA polymerase III, epsilon subunit [Flavobacteriales bacterium ALC-1] Length = 398 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 48/285 (16%), Positives = 97/285 (34%), Gaps = 32/285 (11%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTV 62 +++P GVY + + G ++Y+GK+ N++KRI + + ++ + +I ++S + + Sbjct: 132 DELPSETGVYYIHNENGEIIYIGKSKNIKKRITQHFTNTSSKSKKIQKLVSAVT---YEK 188 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLR------------DDKSFPYILITDKHKIPALYK 110 T +E+ ALL E+ IK KP FN LR D + + I Sbjct: 189 TGSELAALLKESAEIKANKPIFNRALRRTIFTHALYSFIDANGYINLKID---------- 238 Query: 111 HRDSSTIQGSY-FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSG 169 F++ + + + + L ++ ++ C + +K C G Sbjct: 239 ----KADGNESPITTFSTRASGKHFMFKNVDDYKLCQKLTGLYDTKSS-CFKYDVKECDG 293 Query: 170 PCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALS 229 C E E Y + + S N N+ E I L+ Sbjct: 294 ACIEEELPENYNKRISLFISKYSYENKNMLLIDKGRDVHEKSVFLIEKGIFRGFGFFDLN 353 Query: 230 HIQNHNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFL 274 H N+ + + + + + + Sbjct: 354 HQINNKEILESLITPMENNRDTQHIIQSYMRKNRRLKIVELKNNP 398 >gi|88706144|ref|ZP_01103851.1| excinuclease ABC subunit C [Congregibacter litoralis KT71] gi|88699538|gb|EAQ96650.1| excinuclease ABC subunit C [Congregibacter litoralis KT71] Length = 416 Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 70/168 (41%), Gaps = 4/168 (2%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 P CPGVY+ +LY+GK+ ++ R+ S+ R M+S ++ I +T E Sbjct: 99 PRCPGVYRFYSEEDTLLYIGKSIDIGTRLNSHFADAREPGRQQRMMSAVHRIDCQLTAGE 158 Query: 67 VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDK-HKIPALYKHRDSSTIQG--SYFG 123 V ALL+E IK P +N R + + + + + S FG Sbjct: 159 VGALLIENAAIKAETPLYNRRQRRSRKLWTQRLQEDVEGFLQVIPSDFCPAGERIESVFG 218 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPC 171 F S ++ ++ SL R L R R PC Q+ RC G C Sbjct: 219 LFRSRKHIDNSLRSLARDNGLCLRMLGAERGRG-PCFGHQVGRCHGAC 265 >gi|332668025|ref|YP_004450813.1| DNA polymerase III subunit epsilon [Haliscomenobacter hydrossis DSM 1100] gi|332336839|gb|AEE53940.1| DNA polymerase III, epsilon subunit [Haliscomenobacter hydrossis DSM 1100] Length = 463 Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 94/208 (45%), Gaps = 8/208 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE GVY + V+YVGK+ N+QKRI + + T + + Q+++I F VT Sbjct: 197 SLPEACGVYYFHNDQNEVIYVGKSINIQKRIAEHF--ADKTEKARKLQEQVHDISFEVTG 254 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYI--LITDKHKIPALYKHRDSSTIQGS-- 120 +E+ AL+ E+ IKRL P N R +SFPY+ ++ + + Sbjct: 255 SELLALIHESFEIKRLLPGINRAQR-TRSFPYMLHAYRNEQGYLCFGIVETVAKTRRKLD 313 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 F + + + ++S + F L T PC + +K+C+G C G S E Y Sbjct: 314 IIAEFPKISSAKGRLSSAREKFGLC-EKLLNLSPHTGPCFHYHLKQCTGACVGIESPEMY 372 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQ 208 E +AK++L + I + + Sbjct: 373 NERAQQAKEYLCRIFEHNFFIIDQGREE 400 >gi|254515581|ref|ZP_05127641.1| putative Nuclease subunit Cho of the excinuclease complex [gamma proteobacterium NOR5-3] gi|219675303|gb|EED31669.1| putative Nuclease subunit Cho of the excinuclease complex [gamma proteobacterium NOR5-3] Length = 355 Score = 119 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 94/265 (35%), Gaps = 7/265 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + + P CPGVY+ +LY+GK+ ++ R+KS+ R M++ ++ + Sbjct: 42 ALDAAPRCPGVYRFYSEDDALLYIGKSIDIATRLKSHFADAREPGRQQRMMTAVDRVDCQ 101 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDK-HKIPALYKHRDSSTIQG- 119 +T EV ALL+E IK P +N R + + + + + Sbjct: 102 LTAGEVGALLIENAAIKAEAPLYNRRQRRSRKLWTQRLQEDLEGFLQVLPSDFCPAGERI 161 Query: 120 -SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 S FG F S ++ ++ SL R L R R PC QI RC G C G+ S + Sbjct: 162 ESVFGLFRSRRHIDDSLRSLAREHGLCLRMLGAERGRG-PCFQHQIGRCGGACAGKESPQ 220 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 + + A + + + + + E A + R H+ S Sbjct: 221 DHNARLLAALEQQRIAAWPFAGPVLLEEERVAVGKSSEQAQALQPRRQF---HLLHHWSY 277 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHF 263 + F Sbjct: 278 LGTYERRDRARQAAKRDCDLIFDRD 302 >gi|331657777|ref|ZP_08358739.1| excinuclease cho [Escherichia coli TA206] gi|331056025|gb|EGI28034.1| excinuclease cho [Escherichia coli TA206] Length = 141 Score = 119 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 5/90 (5%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 DLPTRPGVYLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKS 93 E+ ALLLEA +IK +P FN LR ++ Sbjct: 86 AGEIGALLLEARLIKEQQPLFNKRLRRNRQ 115 >gi|61680591|pdb|1YCZ|A Chain A, Crystal Structure Of The Giy-Yig N-Terminal Endonuclease Domain Of Uvrc From Thermotoga Maritima gi|61680592|pdb|1YD0|A Chain A, Crystal Structure Of The Giy-Yig N-Terminal Endonuclease Domain Of Uvrc From Thermotoga Maritima Bound To Its Catalytic Divalent Cation: Manganese gi|61680593|pdb|1YD1|A Chain A, Crystal Structure Of The Giy-Yig N-Terminal Endonuclease Domain Of Uvrc From Thermotoga Maritima Bound To Its Catalytic Divalent Cation: Magnesium Length = 96 Score = 119 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 3/84 (3%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 PE PGVY + G +Y+GKA L R++SY+ N T ++ + + + + V E Sbjct: 13 PEEPGVYIFKNK-GVPIYIGKAKRLSNRLRSYL--NPQTEKVFRIGEEADELETIVVMNE 69 Query: 67 VEALLLEANMIKRLKPRFNILLRD 90 EA +LEAN+IK+ +P++N+ L+D Sbjct: 70 REAFILEANLIKKYRPKYNVRLKD 93 >gi|332520671|ref|ZP_08397133.1| DNA polymerase III, epsilon subunit [Lacinutrix algicola 5H-3-7-4] gi|332044024|gb|EGI80219.1| DNA polymerase III, epsilon subunit [Lacinutrix algicola 5H-3-7-4] Length = 444 Score = 117 bits (294), Expect = 4e-24, Method: Composition-based stats. Identities = 41/179 (22%), Positives = 71/179 (39%), Gaps = 28/179 (15%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P G+Y + G+V+YVGKA +++KR+ S+ +S + M+ + +I F ++ Sbjct: 192 NLPNSTGIYFFKNKKGKVVYVGKAKDIKKRVLSHFYSKAQ--KSLDMVRETAHIDFELSG 249 Query: 65 TEVEALLLEANMIKRLKPRFN-ILLRDDKSFPY-----------ILITDKHKIPALYKHR 112 +E ALL+E IK P++N + + K F I I + P Sbjct: 250 SEFIALLMEDAAIKHHYPQYNKVAKKSPKGFSLFSYQDRNDIMHIAINNSKATPKPIIT- 308 Query: 113 DSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPC 171 F S+ + + F L + C + IK C+G C Sbjct: 309 ------------FYSLREARLYLEQICDEFNLCP-KFCHLQENVSTCSHYLIKNCNGIC 354 >gi|260061966|ref|YP_003195046.1| DNA polymerase III subunit epsilon [Robiginitalea biformata HTCC2501] gi|88783528|gb|EAR14699.1| DNA polymerase III, epsilon subunit [Robiginitalea biformata HTCC2501] Length = 456 Score = 117 bits (294), Expect = 4e-24, Method: Composition-based stats. Identities = 47/200 (23%), Positives = 91/200 (45%), Gaps = 16/200 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 Q+PE PG+Y D G V+YVGKA ++++R + + + R + + + I F ++ Sbjct: 194 QLPEAPGIYFFKDSKGNVIYVGKAIDIRQRALGHFYDTSDRER--RLCRETSQIDFELSG 251 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDK------SFPYILITDKHKIPALYKHRDSSTIQ 118 +++ ALL+EA IK+ P++N ++ + S+P + ++ + Sbjct: 252 SDLVALLMEAAAIKKYFPKYNRAQKNIRPAFGLFSYP-------DRNGVIHLAFNRLARG 304 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 F S + L F L + C F++ +C+G C+G+ + E Sbjct: 305 QQALRVFFSQTDARLFLEQLCTEFGLC-AKFCHLQEGVATCSHFRVPQCAGICSGKQTVE 363 Query: 179 KYMEFVHEAKKFLSGGNHNL 198 Y + V +A + L G ++L Sbjct: 364 AYNKKVRDALQSLEPGGNHL 383 >gi|213421439|ref|ZP_03354505.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 77 Score = 117 bits (294), Expect = 4e-24, Method: Composition-based stats. Identities = 30/67 (44%), Positives = 43/67 (64%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + + PGVY+M D G V+YVGKA +L+KR+ SY SN + + +++QI +I TV Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70 Query: 63 TCTEVEA 69 T TE EA Sbjct: 71 THTETEA 77 >gi|119503731|ref|ZP_01625813.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium HTCC2080] gi|119460239|gb|EAW41332.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium HTCC2080] Length = 305 Score = 117 bits (293), Expect = 6e-24, Method: Composition-based stats. Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 14/174 (8%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P GVY+ +LY+GK+ +++ RI ++ R ++ Q+ +I + T Sbjct: 20 LPSYSGVYRFFGADEALLYIGKSIDIKSRINAHYQEGRKVGRHQRIMGQVTHIDCSPTAG 79 Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITD-KHKIPA-------LYKHRDSSTI 117 EV ALL E IK P +N R K + + +H L R + Sbjct: 80 EVGALLTENAAIKAETPLYNRRQRRVKKLWTLHLKLSEHGFLQPSAADFLLESDRAVDS- 138 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPC 171 +G + + +E T+ R L + R R PC +Q+ RC G C Sbjct: 139 ----YGLYQNKRHIESTLQRHARDHGLCLRCMGMDRGRG-PCFQYQLGRCDGAC 187 >gi|300898469|ref|ZP_07116807.1| GIY-YIG catalytic domain protein [Escherichia coli MS 198-1] gi|300357854|gb|EFJ73724.1| GIY-YIG catalytic domain protein [Escherichia coli MS 198-1] Length = 249 Score = 117 bits (292), Expect = 7e-24, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 90/236 (38%), Gaps = 18/236 (7%) Query: 22 VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLK 81 LY+GK+ N++ R+ S++ + + M+ Q I + T E+ ALLLEA +IK + Sbjct: 2 PLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALLLEARLIKEQQ 57 Query: 82 PRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASVDAVEKTINSL 138 P FN LR ++ + + +K + FG FA+ A + + ++ Sbjct: 58 PLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANRRAALQALQTI 113 Query: 139 QRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHN 197 L R R C +KRC+G C G+ S E++ + ++ + L Sbjct: 114 ADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCWP 173 Query: 198 LKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNL 253 A ++ E H + N + + + + + Sbjct: 174 W------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEATTLIRTPAGFDHDGY 223 >gi|289829378|ref|ZP_06546990.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 140 Score = 117 bits (292), Expect = 7e-24, Method: Composition-based stats. Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 5/99 (5%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 EAPALPGVYIFHSESDTLPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQARRISWICT 85 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDK 102 E+ ALLLEA +IK +P FN LR ++ + ++++ Sbjct: 86 AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ 124 >gi|320181228|gb|EFW56147.1| nucleotide excision repair endonuclease [Shigella boydii ATCC 9905] Length = 249 Score = 117 bits (292), Expect = 7e-24, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 90/236 (38%), Gaps = 18/236 (7%) Query: 22 VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLK 81 LY+GK+ N++ R+ S++ + + M+ Q I + T E+ ALLLEA +IK + Sbjct: 2 PLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALLLEARLIKEQQ 57 Query: 82 PRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASVDAVEKTINSL 138 P FN LR ++ + + +K + FG FA+ A + + ++ Sbjct: 58 PLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANRRAALQALQTI 113 Query: 139 QRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHN 197 L R R C +KRC+G C G+ S E++ + ++ + L Sbjct: 114 ADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCWP 173 Query: 198 LKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNL 253 A ++ E H + N + + + + + Sbjct: 174 W------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEDATTLIRTPAGFDHDGY 223 >gi|300930781|ref|ZP_07146153.1| GIY-YIG catalytic domain protein [Escherichia coli MS 187-1] gi|300461339|gb|EFK24832.1| GIY-YIG catalytic domain protein [Escherichia coli MS 187-1] Length = 249 Score = 117 bits (292), Expect = 7e-24, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 90/236 (38%), Gaps = 18/236 (7%) Query: 22 VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLK 81 LY+GK+ N++ R+ S++ + + M+ Q I + T E+ ALLLEA +IK + Sbjct: 2 PLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALLLEARLIKEQQ 57 Query: 82 PRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASVDAVEKTINSL 138 P FN LR ++ + + +K + FG FA+ A + + ++ Sbjct: 58 PLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANRRAALQALQTI 113 Query: 139 QRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHN 197 L R R C +KRC+G C G+ S E++ + ++ + L Sbjct: 114 ADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCWP 173 Query: 198 LKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNL 253 A ++ E H + N + + + + + Sbjct: 174 W------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEATTLIRTPAGFDHDGY 223 >gi|213418218|ref|ZP_03351284.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 114 Score = 117 bits (292), Expect = 7e-24, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 5/97 (5%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 22 EAPALPGVYIFHSESDTLPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQARRISWICT 77 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILIT 100 E+ ALLLEA +IK +P FN LR ++ + ++ Sbjct: 78 AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLS 114 >gi|323186242|gb|EFZ71594.1| hypothetical protein ECOK1357_0395 [Escherichia coli 1357] Length = 249 Score = 117 bits (292), Expect = 7e-24, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 90/236 (38%), Gaps = 18/236 (7%) Query: 22 VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLK 81 LY+GK+ N++ R+ S++ + + M+ Q I + T E+ ALLLEA +IK + Sbjct: 2 PLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALLLEARLIKEQQ 57 Query: 82 PRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASVDAVEKTINSL 138 P FN LR ++ + + +K + FG FA+ A + + S+ Sbjct: 58 PLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANRRAALQALQSI 113 Query: 139 QRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHN 197 L R R C +KRC+G C G+ S E++ + ++ + L Sbjct: 114 ADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCWP 173 Query: 198 LKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNL 253 A ++ E H + N + + + + + Sbjct: 174 W------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEDATTLIRTPAGFDHDGY 223 >gi|300818382|ref|ZP_07098592.1| GIY-YIG catalytic domain protein [Escherichia coli MS 107-1] gi|300529022|gb|EFK50084.1| GIY-YIG catalytic domain protein [Escherichia coli MS 107-1] gi|320188428|gb|EFW63090.1| nucleotide excision repair endonuclease [Escherichia coli O157:H7 str. EC1212] gi|320197925|gb|EFW72533.1| nucleotide excision repair endonuclease [Escherichia coli EC4100B] gi|323175185|gb|EFZ60799.1| hypothetical protein ECLT68_0282 [Escherichia coli LT-68] gi|326342108|gb|EGD65889.1| nucleotide excision repair endonuclease [Escherichia coli O157:H7 str. 1044] gi|326343660|gb|EGD67422.1| nucleotide excision repair endonuclease [Escherichia coli O157:H7 str. 1125] gi|333003741|gb|EGK23277.1| hypothetical protein SFVA6_2386 [Shigella flexneri VA-6] gi|333018290|gb|EGK37589.1| hypothetical protein SFK304_2085 [Shigella flexneri K-304] Length = 249 Score = 117 bits (292), Expect = 8e-24, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 90/236 (38%), Gaps = 18/236 (7%) Query: 22 VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLK 81 LY+GK+ N++ R+ S++ + + M+ Q I + T E+ ALLLEA +IK + Sbjct: 2 PLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALLLEARLIKEQQ 57 Query: 82 PRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASVDAVEKTINSL 138 P FN LR ++ + + +K + FG FA+ A + + S+ Sbjct: 58 PLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANRRAALQALQSI 113 Query: 139 QRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHN 197 L R R C +KRC+G C G+ S E++ + ++ + L Sbjct: 114 ADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCWP 173 Query: 198 LKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNL 253 A ++ E H + N + + + + + Sbjct: 174 W------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEATTLIRTPAGFDHDGY 223 >gi|300823202|ref|ZP_07103335.1| GIY-YIG catalytic domain protein [Escherichia coli MS 119-7] gi|300904598|ref|ZP_07122435.1| GIY-YIG catalytic domain protein [Escherichia coli MS 84-1] gi|301303968|ref|ZP_07210086.1| GIY-YIG catalytic domain protein [Escherichia coli MS 124-1] gi|331668429|ref|ZP_08369277.1| excinuclease cho [Escherichia coli TA271] gi|300403511|gb|EFJ87049.1| GIY-YIG catalytic domain protein [Escherichia coli MS 84-1] gi|300524356|gb|EFK45425.1| GIY-YIG catalytic domain protein [Escherichia coli MS 119-7] gi|300840765|gb|EFK68525.1| GIY-YIG catalytic domain protein [Escherichia coli MS 124-1] gi|315257453|gb|EFU37421.1| GIY-YIG catalytic domain protein [Escherichia coli MS 85-1] gi|331063623|gb|EGI35534.1| excinuclease cho [Escherichia coli TA271] Length = 249 Score = 116 bits (291), Expect = 9e-24, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 90/236 (38%), Gaps = 18/236 (7%) Query: 22 VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLK 81 LY+GK+ N++ R+ S++ + + M+ Q I + T E+ ALLLEA +IK + Sbjct: 2 PLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALLLEARLIKEQQ 57 Query: 82 PRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASVDAVEKTINSL 138 P FN LR ++ + + +K + FG FA+ A + + S+ Sbjct: 58 PLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANRRAALQALQSI 113 Query: 139 QRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHN 197 L R R C +KRC+G C G+ S E++ + ++ + L Sbjct: 114 ADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCWP 173 Query: 198 LKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNL 253 A ++ E H + N + + + + + Sbjct: 174 W------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEATTLIRTPAGFDHDGY 223 >gi|227495992|ref|ZP_03926303.1| DNA polymerase III epsilon subunit [Actinomyces urogenitalis DSM 15434] gi|226834480|gb|EEH66863.1| DNA polymerase III epsilon subunit [Actinomyces urogenitalis DSM 15434] Length = 547 Score = 116 bits (291), Expect = 1e-23, Method: Composition-based stats. Identities = 34/83 (40%), Positives = 49/83 (59%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ +P PGVYQ L AG+VLYVG A +L++R++SY + R+T M+ +R Sbjct: 229 AQDLPTSPGVYQFLSAAGQVLYVGSAVDLRRRVRSYFTAAEKRTRVTQMLDTTVQVRAIP 288 Query: 63 TCTEVEALLLEANMIKRLKPRFN 85 T TEVEA + E +I L P N Sbjct: 289 TPTEVEARVRELRLIAELDPPVN 311 >gi|300994395|ref|ZP_07180900.1| GIY-YIG catalytic domain protein [Escherichia coli MS 45-1] gi|301050920|ref|ZP_07197770.1| GIY-YIG catalytic domain protein [Escherichia coli MS 185-1] gi|300297407|gb|EFJ53792.1| GIY-YIG catalytic domain protein [Escherichia coli MS 185-1] gi|300406241|gb|EFJ89779.1| GIY-YIG catalytic domain protein [Escherichia coli MS 45-1] gi|315286408|gb|EFU45843.1| GIY-YIG catalytic domain protein [Escherichia coli MS 110-3] gi|324007101|gb|EGB76320.1| GIY-YIG catalytic domain protein [Escherichia coli MS 57-2] Length = 249 Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 88/236 (37%), Gaps = 18/236 (7%) Query: 22 VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLK 81 LY+GK+ N++ R+ S++ + + M+ Q I + T E+ ALLLEA +IK + Sbjct: 2 PLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALLLEARLIKEQQ 57 Query: 82 PRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASVDAVEKTINSL 138 P FN LR ++ + + +K + FG FA+ A + + ++ Sbjct: 58 PLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANRRAALQALQTI 113 Query: 139 QRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHN 197 L R R C +KRC+G C G+ S + + + ++ + L Sbjct: 114 ADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHDDHALRLRQSLERLRVVCWP 173 Query: 198 LKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNL 253 A ++ E H + N + + + + Sbjct: 174 W------KGAVALKEQHPEMTQYHIIQNWLWLGAVNSLKEATTLIRAPAGFDHDGY 223 >gi|332086016|gb|EGI91180.1| hypothetical protein SD15574_4005 [Shigella dysenteriae 155-74] Length = 249 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 90/236 (38%), Gaps = 18/236 (7%) Query: 22 VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLK 81 LY+GK+ N++ R+ S++ + + M+ Q I + T E+ ALLLEA +IK + Sbjct: 2 PLYIGKSINIRSRVLSHLRTPDE----ADMLRQSRRISWICTAGEIGALLLEARLIKEQQ 57 Query: 82 PRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASVDAVEKTINSL 138 P FN LR ++ + + +K + FG FA+ A + + ++ Sbjct: 58 PLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANRRAALQALQTI 113 Query: 139 QRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHN 197 L R R C +KRC+G C G+ S E++ + ++ + L Sbjct: 114 ADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCWP 173 Query: 198 LKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNL 253 A ++ E H + N + + + + + Sbjct: 174 W------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEDATTLIRTPAGFDHDGY 223 >gi|319954735|ref|YP_004166002.1| excinuclease abc c subunit domain protein [Cellulophaga algicola DSM 14237] gi|319423395|gb|ADV50504.1| Excinuclease ABC C subunit domain protein [Cellulophaga algicola DSM 14237] Length = 466 Score = 115 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 50/198 (25%), Positives = 88/198 (44%), Gaps = 6/198 (3%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 +++P+ PG+Y+ + +V+YVGKA +++KR+ S+ + T + + + I F Sbjct: 196 QLDRLPKVPGIYKFQNEDKKVIYVGKAKDIKKRVLSHFTAT--TEKELLLCTATYFIDFE 253 Query: 62 VTCTEVEALLLEANMIKRLKPRFN-ILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 +E+ ALL EA++I +L P +N I + ++ + I +K I L R + Sbjct: 254 PMGSELVALLREADLITKLDPYYNYIQKKKHITYLIVPIRNKKGILQLKVERRPFQHTPT 313 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 F + + L F L V +T+ C C G C E + E Y Sbjct: 314 EI--FLKRSLAIERLAQLTEKFELCPSFTGVHNLKTK-CSTISSSSCKGICREEEAIEAY 370 Query: 181 MEFVHEAKKFLSGGNHNL 198 + V +A L+ N N Sbjct: 371 NDRVTQALDHLNNENENF 388 >gi|312966941|ref|ZP_07781159.1| excinuclease cho [Escherichia coli 2362-75] gi|312288405|gb|EFR16307.1| excinuclease cho [Escherichia coli 2362-75] Length = 249 Score = 115 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 90/236 (38%), Gaps = 18/236 (7%) Query: 22 VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLK 81 LY+GK+ N++ R+ S++ + + M+ Q I + T E+ ALLLEA +IK + Sbjct: 2 PLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALLLEARLIKEQQ 57 Query: 82 PRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASVDAVEKTINSL 138 P FN LR ++ + + +K + FG FA+ A + + ++ Sbjct: 58 PLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFATRRAALQALQTI 113 Query: 139 QRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHN 197 L R R C +KRC+G C G+ S E++ + +A + L Sbjct: 114 ADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHARRLRQALERLRVVCWP 173 Query: 198 LKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNL 253 A ++ E H + N + + + + + Sbjct: 174 W------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEATTLIRTPAGFDHDGY 223 >gi|305667231|ref|YP_003863518.1| DNA polymerase III subunit epsilon [Maribacter sp. HTCC2170] gi|88708165|gb|EAR00403.1| DNA polymerase III, epsilon subunit [Maribacter sp. HTCC2170] Length = 454 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 41/196 (20%), Positives = 77/196 (39%), Gaps = 7/196 (3%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 EQMP G+Y M D G +L++GK+ N++KR+ + + + + + I F T Sbjct: 191 EQMPSETGLYYMHDKKGEILFIGKSTNIKKRVNQHFTKDG--AKARQLQKETKKITFEKT 248 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSF-PYILITDKHKIPALYKHRDSSTIQGSYF 122 +E+ ALL E +++ P++N+ R + + Y+ + Sbjct: 249 GSELVALLKENEELRKNHPKYNVNKRPKRLYGLYLC-ANDQGYKYFNIA--VKKKDKECI 305 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 F S + + + F L + + + PC C G C G+ + E Y Sbjct: 306 TSFKSYVGAQNFLQKITDEFQLCTKIGDIPSSKI-PCSDQTEGNCHGACIGQENVESYNS 364 Query: 183 FVHEAKKFLSGGNHNL 198 ++ S N+ Sbjct: 365 RINTILDKFSLAKKNI 380 >gi|300987591|ref|ZP_07178263.1| GIY-YIG catalytic domain protein [Escherichia coli MS 200-1] gi|300306071|gb|EFJ60591.1| GIY-YIG catalytic domain protein [Escherichia coli MS 200-1] gi|324011478|gb|EGB80697.1| GIY-YIG catalytic domain protein [Escherichia coli MS 60-1] Length = 249 Score = 115 bits (287), Expect = 3e-23, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 87/236 (36%), Gaps = 18/236 (7%) Query: 22 VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLK 81 LY+GK+ N++ R+ S++ + + M+ Q I + T E+ ALLLEA +IK + Sbjct: 2 PLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALLLEARLIKEQQ 57 Query: 82 PRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASVDAVEKTINSL 138 P FN LR ++ + + +K + FG FA+ A + + ++ Sbjct: 58 PLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANRRAALQALQTI 113 Query: 139 QRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHN 197 L R C +KRC+G C G+ S + + + ++ + L Sbjct: 114 ADEQKLCYGLLGLEPLSHGRACFRSALKRCAGACCGKESHDDHALRLRQSLERLRVVCWP 173 Query: 198 LKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNL 253 A ++ E H + N + + + + Sbjct: 174 W------KGAVALKEQHPEMTQYHIIQNWLWLGAVNSLKEATTLIRAPAGFDHDGY 223 >gi|61680594|pdb|1YD2|A Chain A, Crystal Structure Of The Giy-Yig N-Terminal Endonuclease Domain Of Uvrc From Thermotoga Maritima: Point Mutant Y19f Bound To The Catalytic Divalent Cation Length = 96 Score = 115 bits (287), Expect = 3e-23, Method: Composition-based stats. Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 3/84 (3%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 PE PGV+ + G +Y+GKA L R++SY+ N T ++ + + + + V E Sbjct: 13 PEEPGVFIFKNK-GVPIYIGKAKRLSNRLRSYL--NPQTEKVFRIGEEADELETIVVMNE 69 Query: 67 VEALLLEANMIKRLKPRFNILLRD 90 EA +LEAN+IK+ +P++N+ L+D Sbjct: 70 REAFILEANLIKKYRPKYNVRLKD 93 >gi|237654602|ref|YP_002890916.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T] gi|237625849|gb|ACR02539.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T] Length = 502 Score = 115 bits (287), Expect = 3e-23, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 87/258 (33%), Gaps = 48/258 (18%) Query: 5 QMPECPGVYQMLDIAG-----------------------------------------RVL 23 +P+ PGVY G L Sbjct: 202 DLPDTPGVYLFYGERGGESSQLGGNDEADAEAEADPLGPGRARTGARDRKRHAPLQDLPL 261 Query: 24 YVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLKPR 83 Y+GK+ L+ R+ S+ +++ + R + Q+ I + T E+ ALL EA ++KRL+P Sbjct: 262 YIGKSTRLRSRVLSHFAADHSSDRELSLSQQVRRIEWIATAGEIGALLKEAELVKRLQPT 321 Query: 84 FNILLRDDKSFPYILITDK--HKIPALYKHRDSSTIQGS---YFGPFASVDAVEKTINSL 138 N LR ++ + L + G +G F + + +L Sbjct: 322 HNRQLRRNRELCTWRLATDIVGDW-RLELVHAADLDFGRRDDLYGFFRTRREATNRLRAL 380 Query: 139 QRTFFLRSCADSVFRHRTRP-CLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHN 197 R L + + C FQ+KRC G C G S + + + EA L + Sbjct: 381 ARDHALCPPLLGLEKPPQGARCFDFQLKRCRGACHGGESPQAHALRLIEALHALKVEHWT 440 Query: 198 LKEKIARNMNQATLKEDY 215 + +A D Sbjct: 441 WPGPVGLREGEAIHVVDG 458 >gi|213965283|ref|ZP_03393480.1| DNA polymerase III, epsilon subunit [Corynebacterium amycolatum SK46] gi|213952135|gb|EEB63520.1| DNA polymerase III, epsilon subunit [Corynebacterium amycolatum SK46] Length = 529 Score = 114 bits (286), Expect = 4e-23, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 40/85 (47%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ P PGVY LY+G A +L++R+ Y + + +IT M+SQ + Sbjct: 217 ADGAPHTPGVYVFRSRNDDPLYIGTALDLRRRLLQYFNGTDSRRKITEMVSQAERVEIIE 276 Query: 63 TCTEVEALLLEANMIKRLKPRFNIL 87 A + EA +I L+P +N Sbjct: 277 CPHGFAAEIREARLISALRPPYNRQ 301 >gi|61680596|pdb|1YD4|A Chain A, Crystal Structure Of The Giy-Yig N-Terminal Endonuclease Domain Of Uvrc From Thermotoga Maritima: Point Mutant Y29f Bound To Its Catalytic Divalent Cation Length = 96 Score = 114 bits (286), Expect = 4e-23, Method: Composition-based stats. Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 3/84 (3%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 PE PGVY + G +++GKA L R++SY+ N T ++ + + + + V E Sbjct: 13 PEEPGVYIFKNK-GVPIFIGKAKRLSNRLRSYL--NPQTEKVFRIGEEADELETIVVMNE 69 Query: 67 VEALLLEANMIKRLKPRFNILLRD 90 EA +LEAN+IK+ +P++N+ L+D Sbjct: 70 REAFILEANLIKKYRPKYNVRLKD 93 >gi|61680595|pdb|1YD3|A Chain A, Crystal Structure Of The Giy-Yig N-Terminal Endonuclease Domain Of Uvrc From Thermotoga Maritima: Point Mutant Y43f Bound To Its Catalytic Divalent Cation Length = 96 Score = 114 bits (285), Expect = 4e-23, Method: Composition-based stats. Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 3/84 (3%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 PE PGVY + G +Y+GKA L R++S++ N T ++ + + + + V E Sbjct: 13 PEEPGVYIFKNK-GVPIYIGKAKRLSNRLRSFL--NPQTEKVFRIGEEADELETIVVMNE 69 Query: 67 VEALLLEANMIKRLKPRFNILLRD 90 EA +LEAN+IK+ +P++N+ L+D Sbjct: 70 REAFILEANLIKKYRPKYNVRLKD 93 >gi|332292966|ref|YP_004431575.1| Excinuclease ABC C subunit domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332171052|gb|AEE20307.1| Excinuclease ABC C subunit domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 453 Score = 114 bits (285), Expect = 4e-23, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 2/84 (2%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +P+ GVY + V+YVGKA +L+KR+ S+ S + + + + + T Sbjct: 194 DHLPKTSGVYYFRNATDEVIYVGKAVDLKKRVISHFKSRLVFEKT--LCKETVAVEYVET 251 Query: 64 CTEVEALLLEANMIKRLKPRFNIL 87 E+ ALL E+ IK+L P +N Sbjct: 252 GNELIALLKESAEIKQLAPTYNSQ 275 >gi|325955495|ref|YP_004239155.1| DNA polymerase III subunit epsilon [Weeksella virosa DSM 16922] gi|323438113|gb|ADX68577.1| DNA polymerase III, epsilon subunit [Weeksella virosa DSM 16922] Length = 466 Score = 114 bits (285), Expect = 5e-23, Method: Composition-based stats. Identities = 30/88 (34%), Positives = 45/88 (51%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + E +P GVY + LY+GKA N++KR+ + NN R ++ I I F Sbjct: 199 NLEHLPTTSGVYFFKSKDNKFLYIGKAINIRKRVNDHFAGNNAGQRRQDFLNDIYTIDFL 258 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLR 89 T E+ ALL E I+R P++N L+ Sbjct: 259 ETGNELMALLTEQEYIRRYWPKYNRALK 286 >gi|303288766|ref|XP_003063671.1| exinuclease ABC subunits B and C-containing protein [Micromonas pusilla CCMP1545] gi|226454739|gb|EEH52044.1| exinuclease ABC subunits B and C-containing protein [Micromonas pusilla CCMP1545] Length = 1800 Score = 114 bits (284), Expect = 6e-23, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 11/115 (9%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN--NHTHRITHMISQINNIRFTV 62 MP G+Y+ L G VLYVGKA NL+ R + Y+ + R + ++ ++ + Sbjct: 1026 DMPAKTGIYRWLAEDGEVLYVGKAKNLRDRTRGYLSPALLERSPRHRTLAAKARSVDNVL 1085 Query: 63 T-CTEVEALLLEANMIKRLKPRFNILLRDDKSFP-----YILITDKHKIPALYKH 111 T E +AL LEA +I+R KP N+LL K P I+ T ++P + Sbjct: 1086 TPGGESDALALEARLIERFKPPLNVLL---KHAPRPDAALIVATISDEVPRFFVV 1137 Score = 45.1 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 52/294 (17%), Positives = 94/294 (31%), Gaps = 77/294 (26%) Query: 311 ETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFT 370 L + + Y G + A NA S + + + + + + Sbjct: 1489 PPPLNSKTNKQPRRYVKHGIDLPPGLPTSLASLARANAVESARRTANVVAASRGLARVLR 1548 Query: 371 ---------KKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN- 420 + + IE D SH+ G S +V + +R++ L Sbjct: 1549 LPIASDAASSSSSSDVAIRTIEGVDVSHLAGSSTAASVVSFVDGRADNAGHRRYELKNTG 1608 Query: 421 ----DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476 D+ DD A + + + ++ PD++++DGGK QL Sbjct: 1609 TGGGDIAPGDDPAAIYAAV---YKRV-------------GSVRSKPLPDLLLIDGGKAQL 1652 Query: 477 SAAQGVLKKLNVE-------------------------NRITIISIAKGPKRSAGMEKFF 511 +AA L+ NVE R+ + S++KG R +G E + Sbjct: 1653 AAAAEALRARNVEIVNLQGVGVGVGGGQDARASGDSTRPRVALASLSKG--RLSGEESVY 1710 Query: 512 VK-----KGEALVLNMR---------------DPILYFIQRLRDEAHRFAITTH 545 V G+ DP + ++ +RDE+H A+ H Sbjct: 1711 VPAAAGENGDGFAAVRVRAGAAEDVAGAKQNLDPGMVLLRLVRDESHAVALGAH 1764 >gi|61680597|pdb|1YD5|A Chain A, Crystal Structure Of The Giy-Yig N-Terminal Endonuclease Domain Of Uvrc From Thermotoga Maritima: Point Mutant N88a Bound To Its Catalytic Divalent Cation Length = 96 Score = 114 bits (284), Expect = 6e-23, Method: Composition-based stats. Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 3/84 (3%) Query: 7 PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66 PE PGVY + G +Y+GKA L R++SY+ N T ++ + + + + V E Sbjct: 13 PEEPGVYIFKNK-GVPIYIGKAKRLSNRLRSYL--NPQTEKVFRIGEEADELETIVVMNE 69 Query: 67 VEALLLEANMIKRLKPRFNILLRD 90 EA +LEAN+IK+ +P++ + L+D Sbjct: 70 REAFILEANLIKKYRPKYAVRLKD 93 >gi|300917695|ref|ZP_07134344.1| GIY-YIG catalytic domain protein [Escherichia coli MS 115-1] gi|300415096|gb|EFJ98406.1| GIY-YIG catalytic domain protein [Escherichia coli MS 115-1] Length = 147 Score = 114 bits (284), Expect = 6e-23, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 12/154 (7%) Query: 22 VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLK 81 LY+GK+ N++ R+ S++ + + M+ Q I + T E+ ALLLEA +IK + Sbjct: 2 PLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALLLEARLIKEQQ 57 Query: 82 PRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASVDAVEKTINSL 138 P FN LR ++ + + +K + FG FA+ A + + S+ Sbjct: 58 PLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANRRAALQALQSI 113 Query: 139 QRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPC 171 L R R C +KRC+G C Sbjct: 114 ADEQKLCYGLLGLEPLSRGRACFRSALKRCAGAC 147 >gi|146301193|ref|YP_001195784.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae UW101] gi|146155611|gb|ABQ06465.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae UW101] Length = 453 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 101/258 (39%), Gaps = 28/258 (10%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 QMP GVY + G ++Y+GK+ N++KR+ + T + + +++ I + T Sbjct: 192 QMPAKTGVYYIYKEDGTLIYIGKSQNIKKRVNQHFTG--ITTKSKRIQAEVFTITYDETG 249 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKS-FP-----------YILITDKHKIPALYKHR 112 +E+ ALL E+ +K +PR+N + KS FP YI + L K Sbjct: 250 SELIALLKESQEVKVNRPRYNRSQK--KSVFPVALYAEKDSNGYINL-------RLEKAD 300 Query: 113 DSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT 172 FAS+ + + + L +++ + + C ++IK C G C Sbjct: 301 GRKKE----ITSFASLQEGKNALFRFTSKYHLCQKLTGLYQTK-KECFQYKIKECDGACI 355 Query: 173 GEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQ 232 GE++ E Y V + S N ++ E+ I L++ Sbjct: 356 GEVTPEVYNLRVQQFISENSFENKSIVLIDRGRNVNERSAILIENGIYKGYAYYDLNYQI 415 Query: 233 NHNDSIYNRMDCFSLYHN 250 + D + N + + Sbjct: 416 TNIDILKNILVPMQHNRD 433 >gi|315299804|gb|EFU59044.1| GIY-YIG catalytic domain protein [Escherichia coli MS 16-3] Length = 249 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 87/236 (36%), Gaps = 18/236 (7%) Query: 22 VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLK 81 LY+GK+ N++ R+ S++ + + M+ Q I + T E+ ALLLEA +IK + Sbjct: 2 PLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALLLEARLIKEQQ 57 Query: 82 PRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASVDAVEKTINSL 138 P FN LR ++ + + +K + F FA+ A + + ++ Sbjct: 58 PLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFSLFANRRAALQALQTI 113 Query: 139 QRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHN 197 L R R C +KRC+G C G+ S + + + ++ + L Sbjct: 114 ADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHDDHALRLRQSLERLRVVCWP 173 Query: 198 LKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNL 253 A ++ E H + N + + + + Sbjct: 174 W------KGAVALKEQHPEMTQYHIIQNWLWLGAVNSLKEATTLIRAPAGFDHDGY 223 >gi|42521879|ref|NP_967259.1| excinuclease ABC subunit C [Bdellovibrio bacteriovorus HD100] gi|39574409|emb|CAE77913.1| excinuclease ABC subunit C [Bdellovibrio bacteriovorus HD100] Length = 511 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 10/126 (7%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM--HSNNHTHRITHMISQINNIRFTV 62 +P+ PGVY+ + G +LYVGKA +L R+ SY + ++ M++Q ++ T Sbjct: 195 NLPKVPGVYRYVSQWGEILYVGKATSLHDRVNSYFRGQKGRDSFKL-EMLTQAYDLIVTE 253 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T +E+ LLE + IK+ PR+NI L+ + L+ H ++ Sbjct: 254 CRTPLESALLETDEIKKYNPRYNISLKAGERG---LVFFSHDFTSMS----PEQDDQHSI 306 Query: 123 GPFASV 128 GPF + Sbjct: 307 GPFTNA 312 >gi|119900237|ref|YP_935450.1| putative DNA-directed polymerase III [Azoarcus sp. BH72] gi|119672650|emb|CAL96564.1| putative DNA-directed polymerase III [Azoarcus sp. BH72] Length = 474 Score = 112 bits (279), Expect = 3e-22, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 73/190 (38%), Gaps = 28/190 (14%) Query: 2 SSEQMPECPGVYQML--------DIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMIS 53 + E +PE PGVY + R LY+G+A +L+ R+ + + I Sbjct: 195 AIEGLPEAPGVYLYFASPEAMPGEGRERPLYIGRAGSLRGRVMEQFAAAARGGKEADFIR 254 Query: 54 QINNIRFTVTCTEVEALLLEANMIKRLKPRFNIL---------LRDDKSFPYILITDKHK 104 ++ + + T E+ A LLEA +++ +P N LR I ++ + Sbjct: 255 RVQRVEWVETAGELGAQLLEAELLRSHRPPHNRQPERGVDAFALR--------HIPNRKR 306 Query: 105 IPALYKHRDSSTIQGSY---FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLL 161 P L + + T ++ +G F S + + + L + PC Sbjct: 307 APILERVTVADTDPATWDALYGCFRSPREADNLLREFALLYQLCPRRLGLEHGGAGPCSA 366 Query: 162 FQIKRCSGPC 171 +RC+G C Sbjct: 367 HLARRCAGVC 376 >gi|332343461|gb|AEE56795.1| endonuclease [Escherichia coli UMNK88] Length = 249 Score = 111 bits (278), Expect = 3e-22, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 18/236 (7%) Query: 22 VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLK 81 LY+GK+ N++ R+ S++ + + M+ Q I + T E+ A LLEA +IK + Sbjct: 2 PLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGAPLLEARLIKEQQ 57 Query: 82 PRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASVDAVEKTINSL 138 P FN LR ++ + + +K + FG FA+ A + + ++ Sbjct: 58 PLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANRRAALQALQTI 113 Query: 139 QRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHN 197 L R R C +KRC+G C G+ S E++ + ++ + L Sbjct: 114 ADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCWP 173 Query: 198 LKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNL 253 A ++ E H + N + + + + + Sbjct: 174 W------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEATTLIRTPAGFDHDGY 223 >gi|207110770|ref|ZP_03244932.1| excinuclease ABC subunit C [Helicobacter pylori HPKX_438_CA4C1] Length = 84 Score = 111 bits (278), Expect = 3e-22, Method: Composition-based stats. Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 8/84 (9%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQI 55 + +P GVYQ D ++LY+GKA NL+KRIKSY ++ + R+ M+ QI Sbjct: 1 KNLPNSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIRNDEITPNHRASLRVQMMVKQI 60 Query: 56 NNIRFTVTCTEVEALLLEANMIKR 79 + + E +AL+LE ++IK+ Sbjct: 61 AFLETILVENEQDALILENSLIKQ 84 >gi|332519635|ref|ZP_08396099.1| Exonuclease RNase T and DNA polymerase III [Lacinutrix algicola 5H-3-7-4] gi|332044194|gb|EGI80388.1| Exonuclease RNase T and DNA polymerase III [Lacinutrix algicola 5H-3-7-4] Length = 398 Score = 110 bits (276), Expect = 5e-22, Method: Composition-based stats. Identities = 47/200 (23%), Positives = 82/200 (41%), Gaps = 16/200 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 QMP GVY + + G ++Y+GK+ N+++RI + + + + ++ + + T Sbjct: 133 QMPSITGVYYIHNKDGDIIYIGKSKNIKRRINQHFTGTDSKSKKIQL--KVTTVTYEATG 190 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKS------FPYILITDKHKIPALYKHRDSSTIQ 118 E+ ALL E IKR KP N L+ KS + I T+ + + Sbjct: 191 NELIALLKENEEIKRNKPILNRALK--KSLFSHGLYKSID-TNGYINLNIEPVDGRKKAI 247 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 + F + + + +N L + C ++IK C G C E ++E Sbjct: 248 TT----FTNKQSGKAFLNHAAEKHKLC-LKLTGLEKTLSSCFKYEIKECEGACINEENTE 302 Query: 179 KYMEFVHEAKKFLSGGNHNL 198 Y V + K S N N+ Sbjct: 303 AYNSKVQKIIKKYSYSNQNM 322 >gi|223939068|ref|ZP_03630952.1| Excinuclease ABC C subunit domain protein [bacterium Ellin514] gi|223892228|gb|EEF58705.1| Excinuclease ABC C subunit domain protein [bacterium Ellin514] Length = 319 Score = 110 bits (276), Expect = 5e-22, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 5/105 (4%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT--HRITHMISQINNIRFTVT 63 +P+ PGVY M RVLYVG++ NL++R+ SY ++ +I ++ + I + Sbjct: 27 VPKKPGVYIMSGEKDRVLYVGQSKNLRQRLSSYKNAKPDRVPRKIIRLVHSVRAITWQEC 86 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYI---LITDKHKI 105 + ALL E +++ L+P+FN L K++ +I I ++ Sbjct: 87 DSPEAALLKENELLRTLRPKFNKLNTYPKAYGFIGLKRIGNQMDF 131 >gi|229822620|ref|YP_002884146.1| Excinuclease ABC C subunit domain protein [Beutenbergia cavernae DSM 12333] gi|229568533|gb|ACQ82384.1| Excinuclease ABC C subunit domain protein [Beutenbergia cavernae DSM 12333] Length = 306 Score = 110 bits (275), Expect = 6e-22, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 11/147 (7%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P PGVY+ D GRVLYVG+A L++R+ SY + M+ QI + V + Sbjct: 11 LPPAPGVYRFRDARGRVLYVGRASELRRRVTSYWGDLRGRGHLRRMVPQIARVEAVVCDS 70 Query: 66 EVEALLLEANMIKRLKPRFNILLRDD--KSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 E EA LE N+++ +PR+N R + +S YI + R FG Sbjct: 71 EHEAAFLERNLLEASRPRWN---RTEGVESIVYIRLE------RRAVLRHDPGGAAPVFG 121 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADS 150 P+ + V ++L R L + Sbjct: 122 PYLGGEKVRLAASALNRALSLAYAGER 148 >gi|154509184|ref|ZP_02044826.1| hypothetical protein ACTODO_01705 [Actinomyces odontolyticus ATCC 17982] gi|153798818|gb|EDN81238.1| hypothetical protein ACTODO_01705 [Actinomyces odontolyticus ATCC 17982] Length = 550 Score = 110 bits (275), Expect = 7e-22, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 4/136 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY +D AG LYVG A +L+ R+ SY ++ M+S +R T Sbjct: 229 DLPTSPGVYHFIDTAGGTLYVGSASSLKSRVGSYYTKAEKRPKVQRMVSLAAGVRPYPTA 288 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 + +EA + E IK L P +N R S ++ I + + P + + + GP Sbjct: 289 SILEARIRELRDIKALAPPYNSASRRQGSQHWV-IAEADR-PRVVSSVTLDDLPNA-LGP 345 Query: 125 F-ASVDAVEKTINSLQ 139 F A + Sbjct: 346 FGTRAHAQRAAGAIER 361 >gi|291166052|gb|EFE28098.1| excinuclease ABC subunit C [Filifactor alocis ATCC 35896] Length = 123 Score = 110 bits (274), Expect = 9e-22, Method: Composition-based stats. Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 1/86 (1%) Query: 528 YFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586 I +R+E HRFAI HR R+K S LD+I G+G +K +LL+ F +VK I + Sbjct: 37 LLIYAIREEVHRFAIEYHRSLREKRLSRSKLDDIPGVGTKKKMILLKEFKSVKNIKEKTE 96 Query: 587 ETLASIEGISKKIACKIYNHFHKNTS 612 E L++I+GI K+ A I +F K Sbjct: 97 EELSAIKGIDKRTAKNIVEYFDKKNP 122 >gi|326773509|ref|ZP_08232792.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505] gi|326636739|gb|EGE37642.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505] Length = 465 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 53/238 (22%), Positives = 89/238 (37%), Gaps = 24/238 (10%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ +P PGVYQ A +VLYVG A +L++R++SY + ++ M+ ++R Sbjct: 220 ADALPSGPGVYQFRSAADQVLYVGSAVDLKRRVRSYFTAAEKRRQVAQMLDTTVSVRHIA 279 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILI---TDKHKIPALYKHRDSSTIQ- 118 T T +EA + E MI L P N R + P++ + + P L T + Sbjct: 280 TPTLIEARVRELRMIAELDPPVNRRSRAPRRRPWLHLAQGSGPGAEPRLALTTVLPTEEV 339 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178 G GPFAS ++ + + + L R + + Sbjct: 340 GHAVGPFASRGRGQEALRAAESVLRLGRWDGRELRR--------------------VRHD 379 Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 E LSG + + + + E YE A RL L + + Sbjct: 380 DVPAEPAEVLACLSGEVDLVASPLLERIAALSRAERYEEAGTWTGRLRCLLRAVDRAE 437 >gi|150025957|ref|YP_001296783.1| DNA polymerase III subunit [Flavobacterium psychrophilum JIP02/86] gi|149772498|emb|CAL43981.1| Probable DNA polymerase III subunit [Flavobacterium psychrophilum JIP02/86] Length = 453 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 40/197 (20%), Positives = 80/197 (40%), Gaps = 30/197 (15%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTV 62 E +P GVY + G ++++GK+ N++KR+ + + +I ++ + + Sbjct: 191 ESLPNKTGVYYIHKENGTIIFIGKSRNIKKRVNQHFTGITKSALKIQ---QEVFTVTYQE 247 Query: 63 TCTEVEALLLEANMIKRLKPRFNILL------------RDDKSFPYILITDKHKIPALYK 110 T +E+ ALL E IKR +P +N + +D + + L K Sbjct: 248 TGSELIALLKETEEIKRNRPIYNRISPKTHFPVAIYCEKDANGYLNLK---------LQK 298 Query: 111 HRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGP 170 +Y S+ + + + + L ++ +T C +I C G Sbjct: 299 FDGRKKEITAY----TSLQEGKNNLFRITSQYNLCQKLTGLYETKTH-CFQQKINECDGA 353 Query: 171 CTGEISSEKYMEFVHEA 187 C G+I+ ++Y + V E Sbjct: 354 CIGKITPQEYNKRVQEF 370 >gi|293189820|ref|ZP_06608534.1| putative DNA polymerase III, epsilon subunit [Actinomyces odontolyticus F0309] gi|292821235|gb|EFF80180.1| putative DNA polymerase III, epsilon subunit [Actinomyces odontolyticus F0309] Length = 540 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 4/136 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY +D AG LYVG A +L+ R+ SY ++ M+S +R T Sbjct: 219 DLPTSPGVYHFIDTAGGTLYVGSASSLKSRVGSYYTKAEKRPKVQRMVSLAAGVRPYPTA 278 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 + +EA + E IK L P +N R S ++ I + + P + + + GP Sbjct: 279 SILEARIRELRDIKALVPPYNSASRRQGSLHWV-IAEADR-PRVVSSVTLDDLPNA-LGP 335 Query: 125 F-ASVDAVEKTINSLQ 139 F A + Sbjct: 336 FGTRAHAQRAAGAIAR 351 >gi|269926472|ref|YP_003323095.1| Excinuclease ABC C subunit domain protein [Thermobaculum terrenum ATCC BAA-798] gi|269790132|gb|ACZ42273.1| Excinuclease ABC C subunit domain protein [Thermobaculum terrenum ATCC BAA-798] Length = 553 Score = 109 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 2/141 (1%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITH-MISQINNIRFTVTC 64 +PE PGVY D G +YVG + NL+ R+++Y+ R + +++ + + Sbjct: 241 VPEWPGVYIFYDSYGTPMYVGSSSNLRSRLRTYLAGQVDITRNMKGFLENVSDFEYVLLA 300 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 T +EA + E +I RL P++NI + ++ I K I L D+ + GP Sbjct: 301 THLEAQIEEMALISRLNPKYNIQKMRTRKLWWLRIEKKDNI-KLAVVSDNRKEGAFHLGP 359 Query: 125 FASVDAVEKTINSLQRTFFLR 145 + + +Q L Sbjct: 360 LPNRKLLYDLKIVVQSALTLC 380 >gi|255087270|ref|XP_002505558.1| exinuclease ABC subunits B and C-containing protein [Micromonas sp. RCC299] gi|226520828|gb|ACO66816.1| exinuclease ABC subunits B and C-containing protein [Micromonas sp. RCC299] Length = 1672 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 3/88 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN--NHTHRITHMISQINNIRFTV 62 +P GVY+ L G VLY+GKA +L+ R + Y+ + R + ++ + Sbjct: 918 DLPAKTGVYRWLAGDGTVLYIGKAKSLRDRTRGYLAPGLLRRSPRHRRLAGLARSVDTVL 977 Query: 63 T-CTEVEALLLEANMIKRLKPRFNILLR 89 T E +AL LEA +I KP N+LL+ Sbjct: 978 TPGGEADALALEARLIAGTKPPLNVLLK 1005 Score = 38.9 bits (89), Expect = 2.2, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 65/226 (28%), Gaps = 67/226 (29%) Query: 377 HIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND----------VKTQD 426 H + IE D SH+ G + +V + + +++L + D Sbjct: 1407 HPIRSIEGVDVSHLAGSATAASVVKFTDGAADPAGHTRYDLDVVNARAPDGTLVGTPGDD 1466 Query: 427 DCAMMRMVLERRF-SQLIKNEENLNFHPKKQEYSF---------------PSWPDVVILD 470 A+ V R + + + +L PD ++D Sbjct: 1467 PGAIYAAVARRCAGKRGVVDLPDLLLIDGGVAQLAAAARALADAGVVVVNARAPDGTLVD 1526 Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK---------KGEALVLN 521 + S L R+ + S+AKG R +G E +V E Sbjct: 1527 RSSEEAS--------LGPARRVALASLAKG--RLSGEEAVYVPMFFSTAATLDDETDTFG 1576 Query: 522 ----------------------MRDPILYFIQRLRDEAHRFAITTH 545 P L ++ +RDE+H A+ H Sbjct: 1577 VAPFARGAHKAWCSSAAKGKDARGGPGLELLRAVRDESHAAALGAH 1622 >gi|257068588|ref|YP_003154843.1| hypothetical protein Bfae_14220 [Brachybacterium faecium DSM 4810] gi|256559406|gb|ACU85253.1| exonuclease, DNA polymerase III, epsilon subunit family [Brachybacterium faecium DSM 4810] Length = 551 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 29/84 (34%), Positives = 46/84 (54%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 +E +P PGVYQ LD G VLYVG + N++ R+++Y + ++ M+ + ++R Sbjct: 215 AEDVPPVPGVYQFLDAQGAVLYVGTSRNVRSRVRTYFTAAETRRKVLDMLPRAESVRVIE 274 Query: 63 TCTEVEALLLEANMIKRLKPRFNI 86 T EA + E +I R KP N Sbjct: 275 CATATEASIRELRIIGREKPPSNR 298 >gi|89890830|ref|ZP_01202339.1| DNA polymerase III [Flavobacteria bacterium BBFL7] gi|89516975|gb|EAS19633.1| DNA polymerase III [Flavobacteria bacterium BBFL7] Length = 453 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 72/178 (40%), Gaps = 12/178 (6%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVTCTE 66 GV+ + ++++GK+ N++KR+ S+ +I ++ ++ F T E Sbjct: 195 STTGVFYFYNQNSELIHLGKSKNIKKRVTQIFTSSQAKQKKIQKLV---TDLSFEKTGNE 251 Query: 67 VEALLLEANMIKRLKPRFNILLRDDKSFP---YILITDKHKIPALYKHRDSSTIQGSYFG 123 + ALL E IK+ KP+FN LR K+F Y I + L + Y Sbjct: 252 LIALLKENIEIKKNKPKFNKSLRK-KNFSHGLYSFIDN-DGYLNLKV--KAIGKDMGYIT 307 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 F+S+ + + + + L C + I +C G C ++E Y Sbjct: 308 SFSSLKSGKNFLEKMVSQHQLC-RKLVGLEEIDTNCENYAIDQCHGACIQVENAESYN 364 >gi|315604561|ref|ZP_07879624.1| DNA polymerase III [Actinomyces sp. oral taxon 180 str. F0310] gi|315313573|gb|EFU61627.1| DNA polymerase III [Actinomyces sp. oral taxon 180 str. F0310] Length = 525 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 4/130 (3%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P PGVY ++ G LYVG A +L+ R+ SY + ++ M+S +R T Sbjct: 210 DLPPSPGVYHFINTDGDTLYVGSASSLRSRVASYYSRSEKRSKVQRMVSLAAGVRSFPTA 269 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124 + +EA + E I L P +N S Y +++D IP + R GP Sbjct: 270 SVIEARIRELRDISALSPPYNSASMRQGS-QYWVVSDGE-IPRVE-ARIGLGQVARSLGP 326 Query: 125 FAS-VDAVEK 133 F S A Sbjct: 327 FGSRAHATRA 336 >gi|320531410|ref|ZP_08032377.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320136382|gb|EFW28363.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 299 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 45/80 (56%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 ++ +P PGVYQ A +VLYVG A +L++R++SY + ++ M+ ++R Sbjct: 220 ADALPSGPGVYQFRSAADQVLYVGSAVDLKRRVRSYFTAAEKRRQVAQMLDTTVSVRHIA 279 Query: 63 TCTEVEALLLEANMIKRLKP 82 T T +EA + E MI L P Sbjct: 280 TPTLIEARVRELRMIAELDP 299 >gi|300311587|ref|YP_003775679.1| nuclease subunit of the excinuclease complex protein [Herbaspirillum seropedicae SmR1] gi|300074372|gb|ADJ63771.1| nuclease subunit of the excinuclease complex protein [Herbaspirillum seropedicae SmR1] Length = 317 Score = 101 bits (252), Expect = 3e-19, Method: Composition-based stats. Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 6/180 (3%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 E +P GVY + + LYVG++ NL+ R+ +++H +I + I T Sbjct: 49 EALPSACGVYILRGEGDQALYVGRSVNLRSRVLAHLHHAED----QFLIGRTRRIECLRT 104 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123 E+ A LLE ++++ L+P N R + + + ++ + G FG Sbjct: 105 AGELGAALLENSLLRDLRPAHNKKQRAKRGLFTLRLDEQGQPLVAQVADHEFNRAGKLFG 164 Query: 124 PFASVDAVEKTINSLQRTFFLRSCADS--VFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 + S A ++ ++ L L S A C QI+RC G CTGE S E++ Sbjct: 165 LYTSERAAQEALHKLVEHHGLCSIATGLEQGEGPGMACFGRQIRRCRGACTGEESHEQHQ 224 >gi|226324328|ref|ZP_03799846.1| hypothetical protein COPCOM_02109 [Coprococcus comes ATCC 27758] gi|225206776|gb|EEG89130.1| hypothetical protein COPCOM_02109 [Coprococcus comes ATCC 27758] Length = 261 Score = 100 bits (249), Expect = 8e-19, Method: Composition-based stats. Identities = 77/254 (30%), Positives = 122/254 (48%), Gaps = 11/254 (4%) Query: 206 MNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHNKNLACIQTCFFH 262 M +A+ ++E AI +R+ L ++ I D +L A +Q F Sbjct: 1 MQEASDDLEFEKAIEYRELLHSVKQIAQKQKITDTGGEDRDIVALAREHEDAVVQVFFIR 60 Query: 263 FGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-CPENILLSEEAEETSLLEISFFK 321 G+ G F+L+ NA+ILS F++QFY P P ++L E EE +LE + Sbjct: 61 NGRLIGRDHFYLRIAQGDENAEILSSFIKQFYAGTPYIPGELMLPVEPEEREILEAWLGE 120 Query: 322 QYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLSTEISHQMILKDFTKKFALPH 377 + G+KV +PK+GEK K++E A NA + E +K+ K L + Sbjct: 121 KRGHKVHFRIPKKGEKEKLVELAAKNAKMVLEKDKERIKREEGRTIGAVKEIEKLLGLNN 180 Query: 378 IPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLER 437 + R+E YD S+ G ++VG M+V +N YRKF++ V+ DD A MR VL R Sbjct: 181 LV-RMEAYDISNTNGFASVGSMIVYERGKPKRNDYRKFHIKG--VQGADDYASMREVLTR 237 Query: 438 RFSQLIKNEENLNF 451 RF ++ +++ Sbjct: 238 RFRHGLEEQKSGKE 251 >gi|224826335|ref|ZP_03699437.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002] gi|224601436|gb|EEG07617.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002] Length = 476 Score = 99.8 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 75/186 (40%), Gaps = 7/186 (3%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P+ PGVY +L G LYVG+ NL++++ ++ +++ + H+ I + + Sbjct: 195 LDSLPDVPGVYLLLGDDGLPLYVGRGANLRRQVLAHFYADKAHGKTLHIAEPIRRVEWRE 254 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDK-HKI--PALYKHRDSS-TIQ 118 T E A+LLE I+ +PR N I + + P + + + Sbjct: 255 TLGEFGAMLLELQWIRAHRPRHNRRGGPGDELCSIQLGEGADGFVRPRIVLAHELDFSRT 314 Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSC---ADSVFRHRTRPCLLFQIKRCSGPCTGEI 175 +G F K + + R L + + + PC FQ C G C G Sbjct: 315 ADLYGLFRHPREARKMLQDMARAQGLCQAVLGVEQMTSRKGAPCGGFQAGLCRGACIGRE 374 Query: 176 SSEKYM 181 + ++ Sbjct: 375 PAMQHN 380 >gi|295677334|ref|YP_003605858.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002] gi|295437177|gb|ADG16347.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002] Length = 382 Score = 99.4 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 13/130 (10%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + P GVY LYVG++ +++R++S++ + + + + + + Sbjct: 203 LDTAPAGCGVYAFYGEGDAPLYVGRSVRVRQRLRSHLTGERRSSKDMRLAQLVRRVEWRA 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKS------FPY---ILITDKHKIPALYKHRD 113 T E+ A+L EA I L+P N L R KS +P+ I+ ++ ++ Sbjct: 263 TGGELGAMLAEAQWIATLRPGHNRLPRVTKSDPANAPWPFEGPIVFEEREDAQRIFHV-- 320 Query: 114 SSTIQGSYFG 123 + Y G Sbjct: 321 --VDRWRYLG 328 >gi|186475443|ref|YP_001856913.1| DNA polymerase III subunit epsilon [Burkholderia phymatum STM815] gi|184191902|gb|ACC69867.1| DNA polymerase III, epsilon subunit [Burkholderia phymatum STM815] Length = 392 Score = 98.3 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 42/83 (50%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + P GVY + LYVG++ +++R++S++ + + + Q+ + + T Sbjct: 204 DTAPAGCGVYAFYGESDAPLYVGRSVRVRQRLRSHLTGERRSSKEMKLAQQVRRVEWRAT 263 Query: 64 CTEVEALLLEANMIKRLKPRFNI 86 E+ ALL EA +I L+P N Sbjct: 264 GGEIGALLAEAQLIAALRPPNNR 286 >gi|209519136|ref|ZP_03267941.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160] gi|209500436|gb|EEA00487.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160] Length = 382 Score = 98.3 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 56/130 (43%), Gaps = 13/130 (10%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + P GVY LYVG++ +++R++S++ + + + + + + Sbjct: 203 LDTAPAGCGVYAFYGEGDAPLYVGRSVRVRQRLRSHLTGERRSSKDMRLAQLVRRVEWRA 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKS------FPY---ILITDKHKIPALYKHRD 113 T E+ A+L EA I L+P N L R KS +P+ I+ ++ + ++ Sbjct: 263 TGGELGAMLAEAQWIATLRPGHNRLPRVTKSDPADAPWPFQGAIVFEEREEAQRVFHV-- 320 Query: 114 SSTIQGSYFG 123 + Y G Sbjct: 321 --VDRWRYLG 328 >gi|311746711|ref|ZP_07720496.1| DNA polymerase III, epsilon subunit [Algoriphagus sp. PR1] gi|126578388|gb|EAZ82552.1| DNA polymerase III, epsilon subunit [Algoriphagus sp. PR1] Length = 456 Score = 97.9 bits (242), Expect = 5e-18, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 86/226 (38%), Gaps = 12/226 (5%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 ++PE GVY M++ G V+YVGKA N+++R K++ + ++ ++++ +T Sbjct: 193 KIPEACGVYYMMNEKGNVVYVGKAINIKERFKNHFSGQLLPSLKQKLKEEVVDLKWEITG 252 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKS----FPYILITDKHKIPALYKHRDSSTIQGS 120 TE ALLLEA IKR+ P++N L+ K+ F Y D + + Sbjct: 253 TEFLALLLEALEIKRIWPKYNNALKLPKTMWGLFHY---EDNSGFSRFQIAKVTKH---- 305 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 P S + ++ L+ + R C C G C + Y Sbjct: 306 -LRPLESFFSSDEAHAFLKEAIDNFDLCPRLCGIRKAACKPGDYNSCQGECFSQSKPNDY 364 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA 226 V E + + I + ++ I+ + Sbjct: 365 NLRVAELVARIKESQKEILLTIPGKSEEEYAACVFDRGILSKYGFY 410 >gi|256159431|ref|ZP_05457203.1| excinuclease ABC subunit C [Brucella ceti M490/95/1] gi|265997863|ref|ZP_06110420.1| UvrABC system protein C [Brucella ceti M490/95/1] gi|262552331|gb|EEZ08321.1| UvrABC system protein C [Brucella ceti M490/95/1] Length = 134 Score = 97.9 bits (242), Expect = 5e-18, Method: Composition-based stats. Identities = 25/52 (48%), Positives = 36/52 (69%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQI 55 +++P PGVY+M + G VLYVGKA NL+KR+ +Y H++RIT MI + Sbjct: 81 KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRET 132 >gi|319950676|ref|ZP_08024577.1| hypothetical protein ES5_13838 [Dietzia cinnamea P4] gi|319435659|gb|EFV90878.1| hypothetical protein ES5_13838 [Dietzia cinnamea P4] Length = 547 Score = 97.5 bits (241), Expect = 6e-18, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 58/149 (38%), Gaps = 3/149 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 +E + + PGVY D AG LYVG + ++++R +SY ++ R+ M+ ++ Sbjct: 232 TEALTDGPGVYVFRDEAGGPLYVGSSGSVRRRARSYYSGGDNRGRMRTMVGLAASVESVP 291 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 +EA +E +I L+P FN R + ++ + R Sbjct: 292 CAHLLEAWTVEEQLIDSLQPPFNRRSRSPRRGWWLS-PPTGRANRPTIVRIPDDPTA--I 348 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSV 151 GPF + L F R + Sbjct: 349 GPFRRTEDARAAWEDLLEAFGGRPTPERW 377 >gi|294626592|ref|ZP_06705190.1| excinuclease subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599159|gb|EFF43298.1| excinuclease subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 287 Score = 97.1 bits (240), Expect = 7e-18, Method: Composition-based stats. Identities = 44/183 (24%), Positives = 74/183 (40%), Gaps = 33/183 (18%) Query: 4 EQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 E +P+ GVY G LY+GK+ N++ R+ + T ++ Q + Sbjct: 28 EALPKTAGVYIFHGKEGLLPLYIGKSVNVRTRVMDH----CRTPEEASLLRQTTLVSCIS 83 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPA---LYKHRDSST--I 117 +V A LLEA M+KR P +N LLR K+P + +R + Sbjct: 84 MAGDVGARLLEAQMVKRQMPLYNKLLR--------------KVPRQFSIRLYRGEVSIVH 129 Query: 118 QGSY--------FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCS 168 Y +G ++S + +K++ + L + R RPC ++RC+ Sbjct: 130 SAEYDVTSSPMLYGLYSSPQSAQKSLRRIADDHRLCYSLVGLERLPLGRPCFRAMLRRCA 189 Query: 169 GPC 171 G C Sbjct: 190 GAC 192 >gi|78046677|ref|YP_362852.1| nucleotide excision repair endonuclease [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035107|emb|CAJ22752.1| Excinuclease subunit [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 287 Score = 97.1 bits (240), Expect = 8e-18, Method: Composition-based stats. Identities = 44/183 (24%), Positives = 74/183 (40%), Gaps = 33/183 (18%) Query: 4 EQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 E +P+ GVY G LY+GK+ N++ R+ + T ++ Q ++ Sbjct: 28 EALPKTAGVYTFHGKEGLLPLYIGKSVNVRTRVMDH----CRTLEEASLLRQTTSVSCIP 83 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPA---LYKHRDSST--I 117 + A LLEA M+KR P +N LLR K+P + +R + Sbjct: 84 MAGDTGARLLEAQMVKRQMPLYNKLLR--------------KVPRQFSIRLYRGEVSIVH 129 Query: 118 QGSY--------FGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCS 168 Y +G ++S + +K++ + L + R RPC +KRC+ Sbjct: 130 SAEYDVASSPMLYGLYSSPQSAQKSLRRIADDHRLCYALVGLERLPSGRPCFRAMLKRCA 189 Query: 169 GPC 171 G C Sbjct: 190 GAC 192 >gi|91784877|ref|YP_560083.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400] gi|91688831|gb|ABE32031.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400] Length = 395 Score = 97.1 bits (240), Expect = 8e-18, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 45/93 (48%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + P GVY LYVG++ +++R++S++ + + + Q+ + + Sbjct: 215 LDTAPAGCGVYAFYGEQDLPLYVGRSVRVRQRLRSHLTGERRSAKDIRLAQQVRRVEWRA 274 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFP 95 T E+ A+L EA I L+P N + R KS P Sbjct: 275 TGGELGAMLAEAQWIAALRPGHNRVPRVAKSDP 307 >gi|296160037|ref|ZP_06842857.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1] gi|295889783|gb|EFG69581.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1] Length = 383 Score = 97.1 bits (240), Expect = 9e-18, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 45/93 (48%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + P GVY LYVG++ +++R++S++ + + + Q+ + + Sbjct: 203 LDTAPAGCGVYAFYGEQDLPLYVGRSVRVRQRLRSHLTGERRSSKDIRLAQQVRRVEWRA 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFP 95 T E+ A+L EA I L+P N + R KS P Sbjct: 263 TGGELGAMLAEAQWIATLRPGHNRVPRVAKSDP 295 >gi|187925051|ref|YP_001896693.1| DNA polymerase III subunit epsilon [Burkholderia phytofirmans PsJN] gi|187716245|gb|ACD17469.1| DNA polymerase III, epsilon subunit [Burkholderia phytofirmans PsJN] Length = 383 Score = 97.1 bits (240), Expect = 9e-18, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 45/93 (48%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + P GVY LYVG++ +++R++S++ + + + Q+ + + Sbjct: 203 LDTAPAGCGVYAFYGEEDLPLYVGRSVRVRQRLRSHLTGERRSSKDIRLAQQVRRVEWRA 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFP 95 T E+ A+L EA I L+P N + R KS P Sbjct: 263 TGGELGAMLAEAQWIATLRPGHNRVPRVAKSDP 295 >gi|86143556|ref|ZP_01061941.1| nuclease subunit Cho of the excinuclease complex (UvrC-like protein) [Leeuwenhoekiella blandensis MED217] gi|85830003|gb|EAQ48464.1| nuclease subunit Cho of the excinuclease complex (UvrC-like protein) [Leeuwenhoekiella blandensis MED217] Length = 519 Score = 96.7 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 58/288 (20%), Positives = 122/288 (42%), Gaps = 15/288 (5%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 E++P GVY D G+ LY+GKA ++QKR+ S+ ++R ++ ++I + +T Sbjct: 241 EELPHKAGVYFFKDKNGKPLYIGKAIDIQKRVLSHFR--EKSNRKYELLQNTHSIDYELT 298 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILIT---DKHKIPALYKHRDSSTIQGS 120 +E+ ALL EA +I + P++N ++ S PY +T +K+ I H++ S Sbjct: 299 GSELLALLREAELILKYYPKYNKAQKNP-SKPY-KLTSYHNKYGIEQFALHKNKIA-PVS 355 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 + + +A++ ++ + C ++I CSG C+GEI+ +Y Sbjct: 356 WMQFYTREEAIQFMEEVCEKFELCP--KYCALQQGVDTCNHYKIHTCSGACSGEIAVTEY 413 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 V +A ++ + + + ++ + + + R + + ++D +N Sbjct: 414 NARVSKALDYIHTYEQSC---LLVEQGRNPGEKSF--IYLKQGRFSGYGFVDENSDFNHN 468 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSY 288 L K+ A + T +E++ I + Sbjct: 469 EDFEHYLIPQKSSAYADRIIRRYLATEKNIVRLPLTTTENSTQDIFAS 516 >gi|312877166|ref|ZP_07737136.1| Excinuclease ABC C subunit domain protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796066|gb|EFR12425.1| Excinuclease ABC C subunit domain protein [Caldicellulosiruptor lactoaceticus 6A] Length = 59 Score = 95.9 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQ 54 +P PGVY M D G V+YVGKA NL+ R++ Y ++ + M+ + Sbjct: 6 KLSNLPTSPGVYIMKDENGNVIYVGKAVNLRNRVRQYFQNSQDMPPKTKLMVKK 59 >gi|78048313|ref|YP_364488.1| putative excinuclease subunit (fragment) [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036743|emb|CAJ24436.1| putative excinuclease subunit (fragment) [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 104 Score = 95.2 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 5/81 (6%) Query: 3 SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E +P GVY LY+GK+ NL+ R+ + T R ++ Q I Sbjct: 26 LETLPTTAGVYLFHGQDSELPLYIGKSVNLRVRVMDHFR----TPREASLLRQTRRISVF 81 Query: 62 VTCTEVEALLLEANMIKRLKP 82 ++ A LLE+ +IK ++P Sbjct: 82 EMAGDLGAQLLESQLIKSMRP 102 >gi|323527026|ref|YP_004229179.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1001] gi|323384028|gb|ADX56119.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1001] Length = 386 Score = 94.0 bits (232), Expect = 6e-17, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 45/93 (48%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 E P GVY LYVG++ +++R+++++ + + + Q+ + + Sbjct: 203 LETAPAGCGVYAFYGDDDLPLYVGRSVRVRQRLRAHLTGERRSSKDIRLAQQVRRVEWRA 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFP 95 T E+ A+L EA I L+P N + R KS P Sbjct: 263 TGGELGAMLAEAQWIAALRPGHNRVPRATKSDP 295 >gi|254495198|ref|ZP_05108122.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152] gi|85819550|gb|EAQ40707.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152] Length = 461 Score = 94.0 bits (232), Expect = 7e-17, Method: Composition-based stats. Identities = 42/182 (23%), Positives = 81/182 (44%), Gaps = 12/182 (6%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +PE GVY + A ++YVGKA N+++R+ S+ + + M + ++ +T T Sbjct: 192 DNLPETFGVYYFKNSAKEIIYVGKANNIKQRVISHFYDKKK--KEREMCLETAHLSYTET 249 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKS----FPYILITDKHKIPALYKHRDSSTIQG 119 +E+ ALLLE++ IK P++N ++ S F Y + + L+ + + Sbjct: 250 GSELLALLLESSEIKTKFPKYNRSQKNSNSAIGLFSY-----EDQKGILHLAFNKLKLTP 304 Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179 + F SV + SL + L + + C + ++ C+G C + Sbjct: 305 NPIMTFYSVSECRAFLESLCTEYQLCP-KYCHLQTNVKSCFSYHLQNCNGVCIDKEDVAT 363 Query: 180 YM 181 Y Sbjct: 364 YN 365 >gi|170693649|ref|ZP_02884807.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M] gi|170141431|gb|EDT09601.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M] Length = 423 Score = 93.2 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 44/93 (47%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + P GVY LYVG++ +++R+++++ + + + Q+ + + Sbjct: 242 LDTAPAGCGVYAFYGDDDLPLYVGRSVRVRQRLRAHLTGERRSSKDIRLAQQVRRVEWRA 301 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFP 95 T E+ A+L EA I L+P N R KS P Sbjct: 302 TGGELGAMLTEAQWIAALRPGHNRAPRVAKSDP 334 >gi|307730690|ref|YP_003907914.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1003] gi|307585225|gb|ADN58623.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1003] Length = 383 Score = 92.9 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 45/93 (48%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 E P GVY LYVG++ +++R+++++ + + + Q+ + + Sbjct: 203 LETAPAGCGVYAFYGEGDLPLYVGRSVRVRQRLRAHLTGERRSSKDMRLAQQVRRVEWRA 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFP 95 T E+ A+L EA I L+P N + R KS P Sbjct: 263 TGGELGAMLAEAQWIAALRPGHNRVPRVTKSDP 295 >gi|213021721|ref|ZP_03336168.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 122 Score = 92.9 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 46/139 (33%), Positives = 73/139 (52%), Gaps = 21/139 (15%) Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEY 458 VV NG ++ +YR++N+ + DD A M VL RR+ + I+ + Sbjct: 1 CVVFDANGPLRAEYRRYNI--AGITPGDDYAAMNQVLRRRYGKAIEESK----------- 47 Query: 459 SFPSWPDVVILDGGKGQLSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KK 514 PDV+++DGGKGQL+ A+ V +L+V ++R ++ +AKG R AG+E F + Sbjct: 48 ----IPDVILIDGGKGQLAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPE 103 Query: 515 GEALVLNMRDPILYFIQRL 533 GE L P L+ IQ + Sbjct: 104 GEGFSLPPDSPALHVIQHI 122 >gi|171911567|ref|ZP_02927037.1| hypothetical protein VspiD_10345 [Verrucomicrobium spinosum DSM 4136] Length = 335 Score = 92.5 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 2/85 (2%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSY--MHSNNHTHRITHMISQINNIRFT 61 + +P PGVY D +G++LYVG+++ L+KR+ SY +H + H R+ ++ Q+ I + Sbjct: 29 QTVPREPGVYYFRDASGKLLYVGQSHELRKRVGSYRHVHPDRHPRRLVRLVHQVRQIEWE 88 Query: 62 VTCTEVEALLLEANMIKRLKPRFNI 86 + + A+ E ++ L+P FN Sbjct: 89 ICESPEAAIERERVLLLELRPGFNR 113 >gi|319955723|ref|YP_004166990.1| DNA polymerase iii, epsilon subunit [Cellulophaga algicola DSM 14237] gi|319424383|gb|ADV51492.1| DNA polymerase III, epsilon subunit [Cellulophaga algicola DSM 14237] Length = 456 Score = 92.1 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 86/197 (43%), Gaps = 7/197 (3%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +P G++ M + G ++ + K+ N++KR+ Y ++ + R + + + F T Sbjct: 191 DDLPSEVGLFYMHNKDGEIILLNKSNNIKKRVNQYFTNSGNRAR--RIQKETRKVTFEKT 248 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPY-ILITDKHK-IPALYKHRDSSTIQGSY 121 E+ ALL E + R KP++N + K F + + + + L K + Sbjct: 249 GNELIALLKENEELGRNKPKYNPFHKR-KLFTFGVYASLNDQGYLQL-KAEKLTHTIHQR 306 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 F S+ A E +++++ F L + + + + +T C + C G C + +E Y Sbjct: 307 ITTFNSLIAAENFLHAVRDEFQLCNKINGLSQAKTN-CSKYDEGTCLGACITKEDTETYN 365 Query: 182 EFVHEAKKFLSGGNHNL 198 V E + S N+ Sbjct: 366 HRVKELIQKYSLTEKNI 382 >gi|110638081|ref|YP_678290.1| DNA polymerase III subunit epsilon [Cytophaga hutchinsonii ATCC 33406] gi|110280762|gb|ABG58948.1| DNA polymerase III, epsilon subunit [Cytophaga hutchinsonii ATCC 33406] Length = 449 Score = 91.7 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 81/224 (36%), Gaps = 9/224 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +PE GVY D G+V+YVGKA N++KR+ S+ + + I + + Sbjct: 191 QFDALPETFGVYYFHDHKGKVIYVGKANNIKKRVISHFSGKQQNQKSQQFMQAIYGLSYE 250 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDD-KSFPYILITDKHKIPALYKHRDSSTIQGS 120 V +E+ +LLLE++ IK+ P +N + + K++ D L Sbjct: 251 VCGSELLSLLLESHEIKKYFPVYNSIQKFGEKNYGIYQYEDNAGFIRLSI-----AKVNK 305 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQI-KRCSGPCTGEISSEK 179 P S + + L +T PC ++ C G + K Sbjct: 306 LQHPLISFRYISEARTFLLEKVRTFQLCHRRSGLQTAPCSDVELCTACKGTTRSTAYNVK 365 Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRD 223 + + ++ +K+ A + + + + Sbjct: 366 MKRALATFEH--PDHSYIIKQPGRTRDEYAVIVVEAGRYLGYAY 407 >gi|27065203|pdb|1KFT|A Chain A, Solution Structure Of The C-Terminal Domain Of Uvrc From E- Coli Length = 78 Score = 91.3 bits (225), Expect = 4e-16, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 34/53 (64%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 S L+ I G+GP R+++LL+ G ++ + +S E +A + GIS+ +A KI+ Sbjct: 21 MNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIF 73 >gi|88801444|ref|ZP_01116972.1| DNA polymerase III, epsilon subunit [Polaribacter irgensii 23-P] gi|88782102|gb|EAR13279.1| DNA polymerase III, epsilon subunit [Polaribacter irgensii 23-P] Length = 462 Score = 91.3 bits (225), Expect = 4e-16, Method: Composition-based stats. Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 20/189 (10%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 + + +PE GVY ++A ++YVGKA N+++R+ S+ + + M + ++ F Sbjct: 190 IVIDNLPETFGVYYFKNLAKEIIYVGKANNIKQRVISHFYDKKK--KEQTMCLETADVSF 247 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKS------FPYILITDKHKIPALYKHRDS 114 T T +E+ ALLLE++ IK + P+FN R KS F Y D+ I L +R Sbjct: 248 TKTGSELLALLLESSEIKHIYPKFNRAQR--KSAEAVGLFSY---EDQKGILHLAYNRLK 302 Query: 115 STIQG--SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT 172 Y+ S+ + +L TF L + C +Q+K C G C Sbjct: 303 LAPNALLKYY----SISECRNHLETLCETFELCP-KYCHLQTNVSSCFHYQLKECKGVCC 357 Query: 173 GEISSEKYM 181 + + E Y Sbjct: 358 DKETVESYN 366 >gi|213422191|ref|ZP_03355257.1| UvrC excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 76 Score = 90.5 bits (223), Expect = 7e-16, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 34/51 (66%) Query: 554 YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 S L+ I G+GP R+++LL+ G ++ + +S E +A + GIS+ +A KI+ Sbjct: 21 TSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIF 71 >gi|315281520|ref|ZP_07870131.1| UvrABC system protein C [Listeria marthii FSL S4-120] gi|313614832|gb|EFR88365.1| UvrABC system protein C [Listeria marthii FSL S4-120] Length = 252 Score = 90.5 bits (223), Expect = 8e-16, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 105/252 (41%), Gaps = 18/252 (7%) Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173 YFGP+ + +T+ +++ F L C RPCL + + C GPC Sbjct: 4 VKQDGAHYFGPYPGRYSARQTVELIEKLFPLCRCDG----KPGRPCLYYHLGLCLGPCHE 59 Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 EI Y + + +FL G ++K+K+ M +A K ++E A RD++ A++ Sbjct: 60 EIEPAIYENQIRKISRFLEGDIKDVKDKLTAEMQEAIEKLEFERAAELRDKMQAINETIE 119 Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290 I+ D Y N + F G G+ + E++ L+ F+ Sbjct: 120 KQHIIFPGLKNRDIIGCYQQDNYLSVFVFFVRNGAINGSKWHVFEI--ETSLQDDLANFI 177 Query: 291 RQFYTD--KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA 348 FY D P+ +L++E+ ++ L E + P++G K+K I+ A+ NA Sbjct: 178 NHFYEDPNNIQPKELLIAEKIDKKLLQESL-------RKACLFPQKGGKKKQIDLAIENA 230 Query: 349 HRSHTQKLSTEI 360 ++ + Sbjct: 231 KSAYIAYAKMKE 242 >gi|254252965|ref|ZP_04946283.1| DNA polymerase III [Burkholderia dolosa AUO158] gi|124895574|gb|EAY69454.1| DNA polymerase III [Burkholderia dolosa AUO158] Length = 375 Score = 90.2 bits (222), Expect = 9e-16, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 41/85 (48%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + P G Y + LYVG++ +++R+++ + + + + Q+ + + Sbjct: 203 LDTAPAGCGAYALFGENDEPLYVGRSVRVRQRLRALLTGERRSSKEMRLAQQVRRVEWRE 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNIL 87 T E+ A+L EA I RL+P +N Sbjct: 263 TGNELGAMLAEAQWIARLRPSYNRR 287 >gi|256372239|ref|YP_003110063.1| Exonuclease RNase T and DNA polymerase III [Acidimicrobium ferrooxidans DSM 10331] gi|256008823|gb|ACU54390.1| Exonuclease RNase T and DNA polymerase III [Acidimicrobium ferrooxidans DSM 10331] Length = 475 Score = 89.4 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 2/84 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + ++P PGVY D GRVLYVG A +L R++SY ++ T + ++ + ++I Sbjct: 208 QARRLPHRPGVYYFHDA-GRVLYVGVATDLHDRVRSYFSADTRTS-VRRLLRRASSISAR 265 Query: 62 VTCTEVEALLLEANMIKRLKPRFN 85 ++ L E I+ L+P FN Sbjct: 266 PVPCDIARPLTELAEIQTLRPPFN 289 >gi|332882730|ref|ZP_08450341.1| GIY-YIG catalytic domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679232|gb|EGJ52218.1| GIY-YIG catalytic domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 442 Score = 88.6 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 +++PE G++ M + G+++Y+GK N++KR+ S + R ++ + + Sbjct: 190 LDELPEKLGIFYMHNEEGKIIYIGKHKNIKKRVNQLFTS--LSKRDRYLQRHTYKVTYEE 247 Query: 63 TCTEVEALLLEANMIKRLKPRFNIL 87 T E+ A L E +I+ KP+ N Sbjct: 248 TGNELIATLKEIEVIQLNKPKCNSR 272 >gi|172059933|ref|YP_001807585.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria MC40-6] gi|171992450|gb|ACB63369.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6] Length = 375 Score = 88.6 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 43/90 (47%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + P GVY + LYVG++ +++R+++ + + + + Q+ + + Sbjct: 203 LDTAPAGCGVYALFGEGDEALYVGRSVRVRQRLRALLTGERRSSKEMRLAQQVRRVEWRE 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDK 92 T E+ A+L EA I RL+P N DK Sbjct: 263 TGNELGAMLAEAQWIARLRPSHNRRPAADK 292 >gi|115350920|ref|YP_772759.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria AMMD] gi|115280908|gb|ABI86425.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD] Length = 375 Score = 88.6 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 43/90 (47%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + P GVY + LYVG++ +++R+++ + + + + Q+ + + Sbjct: 203 LDTAPAGCGVYALFGEGDEALYVGRSVRVRQRLRALLTGERRSSKEMRLAQQVRRVEWRE 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDK 92 T E+ A+L EA I RL+P N DK Sbjct: 263 TGNELGAMLAEAQWIARLRPSHNRRPAADK 292 >gi|167581005|ref|ZP_02373879.1| possible DNA polymerase/helicase [Burkholderia thailandensis TXDOH] Length = 379 Score = 88.2 bits (217), Expect = 4e-15, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 2/91 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 E P GVY + LYVG++ +++R+++ + + + + + + + Sbjct: 203 LESAPAGCGVYALFGDDDAPLYVGRSVRVRQRLRALLTGERRSAKEMRLAQLVRRVEWRE 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKS 93 T E+ ALL EA+ I L P FN R D+S Sbjct: 263 TGGELGALLAEADWIASLAPSFNR--RSDRS 291 >gi|325288177|ref|YP_004263967.1| DNA polymerase III subunit epsilon [Cellulophaga lytica DSM 7489] gi|324323631|gb|ADY31096.1| DNA polymerase III, epsilon subunit [Cellulophaga lytica DSM 7489] Length = 454 Score = 88.2 bits (217), Expect = 4e-15, Method: Composition-based stats. Identities = 46/252 (18%), Positives = 108/252 (42%), Gaps = 13/252 (5%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 EQ+P GVY M D G ++++G++ +++K++ + ++ + + Q + F T Sbjct: 191 EQLPNDTGVYYMYDKDGDLIFLGRSTDIKKKVNKHFTGVSNVAK--KLQKQTRKVTFEKT 248 Query: 64 CTEVEALLLEANMIKRLKPRFNILLRDDKSFPY-ILIT-DKHKIPALYKHRDSSTIQGSY 121 ++ A L E ++R+KP++N +R K F Y + I +K +L+ + ++T Q Sbjct: 249 GNDLIATLKENEELRRVKPKYNSSIRK-KLFNYGVFIKENKDGYLSLFIDKTTTTDQTIG 307 Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181 F+S A + ++ + F L + + + +T C ++ C+G C + ++E Y Sbjct: 308 T--FSSYIAAKNFVHKTSKEFTLCNKVNYISEAKTN-CGNYEDGTCNGACIKKEATEVYN 364 Query: 182 EFVHEAKKFLSGGNHNL-----KEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 V + + S N+ +I +++ + + + Sbjct: 365 ARVKQVIETYSLAGKNILIKDKGREIGEYSAILIKNGEFKGYGYYNLNHQINNIHILESI 424 Query: 237 SIYNRMDCFSLY 248 + +++ Sbjct: 425 ITNMKSTQNTIH 436 >gi|189349710|ref|YP_001945338.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC 17616] gi|189333732|dbj|BAG42802.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC 17616] Length = 375 Score = 87.9 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 43/85 (50%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + P G Y + + LYVG++ +++R+++ + + + + Q+ + + Sbjct: 203 LDTAPAGCGAYALFGEEDQPLYVGRSVRVRQRLRALLTGERRSSKEMRIAQQVRRVEWRE 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNIL 87 T E+ A+L+EA I RL+P +N Sbjct: 263 TGNELGAMLVEAQWIARLRPSYNRR 287 >gi|161525562|ref|YP_001580574.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC 17616] gi|160342991|gb|ABX16077.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans ATCC 17616] Length = 398 Score = 87.9 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 43/85 (50%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + P G Y + + LYVG++ +++R+++ + + + + Q+ + + Sbjct: 226 LDTAPAGCGAYALFGEEDQPLYVGRSVRVRQRLRALLTGERRSSKEMRIAQQVRRVEWRE 285 Query: 63 TCTEVEALLLEANMIKRLKPRFNIL 87 T E+ A+L+EA I RL+P +N Sbjct: 286 TGNELGAMLVEAQWIARLRPSYNRR 310 >gi|167570838|ref|ZP_02363712.1| possible DNA polymerase/helicase [Burkholderia oklahomensis C6786] Length = 408 Score = 87.9 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 41/85 (48%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 E+ P GVY + LYVG++ +++R+++ + + + + + + + Sbjct: 203 LERAPAGCGVYALFGDNDVPLYVGRSVRVRQRLRALLTGERRSSKEMRLAQLVRRVEWRE 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNIL 87 T E+ ALL EA+ I L P FN Sbjct: 263 TGGELGALLAEADWIASLAPSFNRR 287 >gi|167563688|ref|ZP_02356604.1| possible DNA polymerase/helicase [Burkholderia oklahomensis EO147] Length = 405 Score = 87.9 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 41/85 (48%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 E+ P GVY + LYVG++ +++R+++ + + + + + + + Sbjct: 203 LERAPAGCGVYALFGDNDVPLYVGRSVRVRQRLRALLTGERRSSKEMRLAQLVRRVEWRE 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNIL 87 T E+ ALL EA+ I L P FN Sbjct: 263 TGGELGALLAEADWIASLAPSFNRR 287 >gi|329296606|ref|ZP_08253942.1| excinuclease ABC subunit C [Plautia stali symbiont] Length = 59 Score = 87.9 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 32/55 (58%) Query: 554 YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 S L+ I G+GP R++ LL+ G ++ + +S + +A + GIS +A KIY Sbjct: 4 TSALESIEGVGPKRRQQLLKYMGGLQPLMNASVDDIAKVPGISFALAEKIYYWLK 58 >gi|323254394|gb|EGA38211.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] Length = 221 Score = 87.9 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 8/135 (5%) Query: 51 MISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYK 110 M+ Q I + T E+ ALLLEA +IK +P FN LR ++ + ++++ + Sbjct: 1 MLRQARRISWICTAGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEV 56 Query: 111 HRDSSTIQGS---YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKR 166 S FG FA+ A +++ +L L + R R C F +KR Sbjct: 57 VSARSVDFSHEPNLFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRACFRFALKR 116 Query: 167 CSGPCTGEISSEKYM 181 C+G C G+ + + + Sbjct: 117 CAGACCGQETPQAHF 131 >gi|167837493|ref|ZP_02464376.1| possible DNA polymerase/helicase [Burkholderia thailandensis MSMB43] Length = 379 Score = 87.5 bits (215), Expect = 6e-15, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 40/85 (47%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 E P GVY + LYVG++ +++R+++ + + + + + + + Sbjct: 203 LESAPAGCGVYALFGDDDAPLYVGRSVRVRQRLRALLTGERRSAKEMRLAQLVRRVEWRE 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNIL 87 T E+ ALL EA+ I L P FN Sbjct: 263 TGGELGALLAEADWIASLAPSFNRR 287 >gi|83720800|ref|YP_442134.1| DNA polymerase/helicase [Burkholderia thailandensis E264] gi|167619083|ref|ZP_02387714.1| possible DNA polymerase/helicase [Burkholderia thailandensis Bt4] gi|257138320|ref|ZP_05586582.1| DNA polymerase/helicase [Burkholderia thailandensis E264] gi|83654625|gb|ABC38688.1| possible DNA polymerase/helicase [Burkholderia thailandensis E264] Length = 379 Score = 87.5 bits (215), Expect = 6e-15, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 40/85 (47%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 E P GVY + LYVG++ +++R+++ + + + + + + + Sbjct: 203 LESAPAGCGVYALFGDDDAPLYVGRSVRVRQRLRALLTGERRSAKEMRLAQLVRRVEWRE 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNIL 87 T E+ ALL EA+ I L P FN Sbjct: 263 TGGELGALLAEADWIASLAPSFNRR 287 >gi|78065586|ref|YP_368355.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383] gi|77966331|gb|ABB07711.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383] Length = 378 Score = 87.5 bits (215), Expect = 6e-15, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 41/85 (48%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + P G Y + LYVG++ +++R+++ + + + + Q+ + + Sbjct: 204 LDTAPAGCGAYALFGEEDAPLYVGRSVRVRQRLRALLTGERRSSKEMRLAQQVRRVEWRE 263 Query: 63 TCTEVEALLLEANMIKRLKPRFNIL 87 T E+ A+L EA I RL+P +N Sbjct: 264 TGNELGAMLAEAQWIARLRPSYNRR 288 >gi|94967088|ref|YP_589136.1| UvrB/UvrC protein [Candidatus Koribacter versatilis Ellin345] gi|94549138|gb|ABF39062.1| UvrB/UvrC protein [Candidatus Koribacter versatilis Ellin345] Length = 413 Score = 87.1 bits (214), Expect = 9e-15, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 97/243 (39%), Gaps = 21/243 (8%) Query: 14 QMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEA-LLL 72 + G YV K NL++R+ + + + ++ ++ + +++ ++ EA L Sbjct: 28 LLRGAEGTEPYVSKTSNLRRRMVRLLGAPEERTKRLNLRDRVQGLEYSLVASDFEAQFCL 87 Query: 73 EANM--I------KRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQGSYF 122 + I RLK RF P + + +++ P + + +Y+ Sbjct: 88 YRTLREIFPSTYTDRLKLRF---------APLVRLILENEYPRVAVTTRIQSLKSKSAYY 138 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP-CLLFQIKRCSGPCTGEISSEKYM 181 GPFAS A EK N F LR C D + P C+ ++K C PC + E+Y Sbjct: 139 GPFASRVAAEKFSNDALDFFLLRRCTDDLNPDPAFPGCIYSEMKMCLAPCFKGCTDERYA 198 Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241 ++F G +L +I + N A+ ++E A ++ L + + Sbjct: 199 AETASVREFFESGGRSLLRQIEIDRNIASENLEFEKAAELHTKIEKLKAVTQQASELVRN 258 Query: 242 MDC 244 ++ Sbjct: 259 IER 261 >gi|206561350|ref|YP_002232115.1| possible DNA polymerase/helicase [Burkholderia cenocepacia J2315] gi|198037392|emb|CAR53327.1| possible DNA polymerase/helicase [Burkholderia cenocepacia J2315] Length = 375 Score = 87.1 bits (214), Expect = 9e-15, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 41/85 (48%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + P G Y + LYVG++ +++R+++ + + + + Q+ + + Sbjct: 203 LDTAPAGCGAYALFGERDEALYVGRSVRVRQRLRALLTGERRSSKEMRLAQQVRRVEWRE 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNIL 87 T E+ A+L EA I RL+P +N Sbjct: 263 TGNELGAMLAEAQWIARLRPSYNRR 287 >gi|107022085|ref|YP_620412.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU 1054] gi|116689029|ref|YP_834652.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia HI2424] gi|170732318|ref|YP_001764265.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3] gi|254246035|ref|ZP_04939356.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia PC184] gi|105892274|gb|ABF75439.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU 1054] gi|116647118|gb|ABK07759.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia HI2424] gi|124870811|gb|EAY62527.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia PC184] gi|169815560|gb|ACA90143.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia MC0-3] Length = 375 Score = 87.1 bits (214), Expect = 9e-15, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 41/85 (48%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + P G Y + LYVG++ +++R+++ + + + + Q+ + + Sbjct: 203 LDTAPAGCGAYALFGERDEALYVGRSVRVRQRLRALLTGERRSSKEMRLAQQVRRVEWRE 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNIL 87 T E+ A+L EA I RL+P +N Sbjct: 263 TGNELGAMLAEAQWIARLRPSYNRR 287 >gi|320539164|ref|ZP_08038835.1| putative endonuclease of nucleotide excision repair [Serratia symbiotica str. Tucson] gi|320030802|gb|EFW12810.1| putative endonuclease of nucleotide excision repair [Serratia symbiotica str. Tucson] Length = 227 Score = 86.7 bits (213), Expect = 9e-15, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 71/235 (30%), Gaps = 17/235 (7%) Query: 38 YMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYI 97 + + ++ Q I F T + ALLLEA +IK+ +P FN LR K + Sbjct: 3 HFRAQGE----AKLLRQTQRISFITTAGALGALLLEAQLIKQQQPLFNKRLRRSKQLCSL 58 Query: 98 LITDKHKIPALYKHRDSSTIQG---SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH 154 I D + + +G FA+ + + L + + Sbjct: 59 RIGDG----RVMIVHAKEIDFAVTPNLYGLFANRSTALAKLRVIADEQRLCYGKLGIDKL 114 Query: 155 RTR-PCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKE 213 C F + +C+G C G S +++ + + A + + + + Sbjct: 115 PVGAACFRFSLGKCAGACCGAESEQQHGQRLVTALEQIR-----INCWPYTGRVALEEQG 169 Query: 214 DYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRG 268 D D L + + + + + + + Sbjct: 170 DSLRQYHVIDNWFYLGSVSSLEQADALQHRASHFDSDGYKILCKPLMAGHYRIIE 224 >gi|213583235|ref|ZP_03365061.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 126 Score = 86.7 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 8/127 (6%) Query: 49 THMISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPAL 108 M+ Q I + T E+ ALLLEA +IK +P FN LR ++ + ++++ + Sbjct: 4 AAMLRQARRISWICTAGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KI 59 Query: 109 YKHRDSSTIQGS---YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQI 164 S FG FA+ A +++ +L L + R R C F + Sbjct: 60 EVVSARSVDFSHEPNLFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRACFRFAL 119 Query: 165 KRCSGPC 171 KRC+G C Sbjct: 120 KRCAGAC 126 >gi|237654661|ref|YP_002890975.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T] gi|237625908|gb|ACR02598.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T] Length = 482 Score = 86.7 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 30/204 (14%), Positives = 65/204 (31%), Gaps = 41/204 (20%) Query: 3 SEQMPECPGVYQML--------DIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQ 54 E +P+ PG+Y L+VG+A +L+ R++ + + R + ++ Sbjct: 196 LEALPDAPGLYLFHAQPEPPPAGARDPALFVGRAQSLRARVREHFGAGARKGRDAELAAR 255 Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHK---------- 104 + + + T E++ L E +++ L P +N + Sbjct: 256 VKRVEWIETAGELDTSLRENALLRALAPPYNR--------------PQEPAEAAFALRLL 301 Query: 105 --------IPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT 156 + G F + + + L + L + Sbjct: 302 PRRRRAPIYETVAIAGTDPADWHDLHGVFRNRREADNLLRELALLYRLCPRRLG-LEGGS 360 Query: 157 RPCLLFQIKRCSGPCTGEISSEKY 180 PC +RC+G C + E++ Sbjct: 361 GPCTAHAARRCAGVCARRETPEEH 384 >gi|330903803|gb|EGH34375.1| excinuclease ABC subunit C [Pseudomonas syringae pv. japonica str. M301072PT] Length = 53 Score = 86.7 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 35/53 (66%) Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 + + G+GP R+R LL+ FG ++ +SR+S + +A GISKK+A IY + H Sbjct: 1 EGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAESIYANLHSE 53 >gi|56477410|ref|YP_158999.1| nuclease subunit Cho of the excinuclease complex (UvrC homolog protein) [Aromatoleum aromaticum EbN1] gi|56313453|emb|CAI08098.1| Nuclease subunit Cho of the excinuclease complex (UvrC homolog protein) [Aromatoleum aromaticum EbN1] Length = 469 Score = 86.3 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 75/191 (39%), Gaps = 22/191 (11%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + E +P+ PGVY R+LY+G++ +L+ R+ + + Q+ + + Sbjct: 195 ALEGVPDAPGVYSFFGENDRLLYIGRSASLRARVMEHFSPGRADS-EAGLARQVRRVEWE 253 Query: 62 VTCTEVEALLLEANMIKRLKPRFNI---------LLRDDKSFPYILITDKHKIPALYKHR 112 T E A L EA++++ +P LR L+ + + P + Sbjct: 254 ETAGEFAASLREADLLRARRPLHARPAVGGEDVFGLR--------LVPQRKRAPIFERVP 305 Query: 113 DSSTIQGSY---FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSG 169 +T ++ G F + + + L + + L + C + +RC+G Sbjct: 306 LHATDPAAWEAVHGTFRTRKEADSLLRELAQLYQLCPRRLG-LEGGSGACGAHEARRCAG 364 Query: 170 PCTGEISSEKY 180 CTG+ S + Sbjct: 365 VCTGKESIAAH 375 >gi|221201212|ref|ZP_03574252.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2M] gi|221179062|gb|EEE11469.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2M] Length = 398 Score = 86.3 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 43/85 (50%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + P G Y + + LYVG++ +++R+++ + + + + Q+ + + Sbjct: 226 LDTAPVGCGAYALFGEEDQPLYVGRSVRVRQRLRALLTGERRSSKEMRIAQQVRRVEWRE 285 Query: 63 TCTEVEALLLEANMIKRLKPRFNIL 87 T E+ A+L+EA I RL+P +N Sbjct: 286 TGNELGAMLVEAQWIARLRPSYNRR 310 >gi|221206334|ref|ZP_03579347.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2] gi|221173643|gb|EEE06077.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2] Length = 375 Score = 86.3 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 43/85 (50%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + P G Y + + LYVG++ +++R+++ + + + + Q+ + + Sbjct: 203 LDTAPVGCGAYALFGEEDQPLYVGRSVRVRQRLRALLTGERRSSKEMRIAQQVRRVEWRE 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNIL 87 T E+ A+L+EA I RL+P +N Sbjct: 263 TGNELGAMLVEAQWIARLRPSYNRR 287 >gi|221213616|ref|ZP_03586590.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1] gi|221166405|gb|EED98877.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1] Length = 375 Score = 86.3 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 43/85 (50%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + P G Y + + LYVG++ +++R+++ + + + + Q+ + + Sbjct: 203 LDTAPVGCGAYALFGEEDQPLYVGRSVRVRQRLRALLTGERRSSKEMRIAQQVRRVEWRE 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNIL 87 T E+ A+L+EA I RL+P +N Sbjct: 263 TGNELGAMLVEAQWIARLRPSYNRR 287 >gi|254295577|ref|ZP_04963035.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 406e] gi|157805524|gb|EDO82694.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 406e] Length = 381 Score = 85.9 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 41/85 (48%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 E P GVY + LYVG++ +++R+++ + + + T + + + + Sbjct: 203 LESAPAGCGVYTLFGDGDAPLYVGRSVRVRQRLRALLTGERRSSKETRLAQLVRRVEWRE 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNIL 87 T E+ ALL EA+ I L P FN Sbjct: 263 TGGELGALLAEADWIASLAPSFNRR 287 >gi|126438667|ref|YP_001059957.1| exonuclease DNA polymerase III subunit epsilon [Burkholderia pseudomallei 668] gi|126218160|gb|ABN81666.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 668] Length = 381 Score = 85.9 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 2/91 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 E P GVY + LYVG++ +++R+++ + + + T + + + + Sbjct: 203 LESAPAGCGVYALFGDGDAPLYVGRSVRVRQRLRALLTGERRSSKETRLAQLVRRVEWRE 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKS 93 T E+ ALL EA+ I L P FN R D+S Sbjct: 263 TGGELGALLAEADWIASLAPSFNR--RSDRS 291 >gi|167920040|ref|ZP_02507131.1| possible DNA polymerase/helicase [Burkholderia pseudomallei BCC215] Length = 346 Score = 85.2 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 41/85 (48%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 E P GVY + LYVG++ +++R+++ + + + T + + + + Sbjct: 203 LESAPAGCGVYALFGDGDAPLYVGRSVRVRQRLRALLTGERRSSKETRLAQLVRRVEWRE 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNIL 87 T E+ ALL EA+ I L P FN Sbjct: 263 TGGELGALLAEADWIASLAPSFNRR 287 >gi|167912066|ref|ZP_02499157.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 112] Length = 343 Score = 85.2 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 41/85 (48%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 E P GVY + LYVG++ +++R+++ + + + T + + + + Sbjct: 203 LESAPAGCGVYALFGDGDAPLYVGRSVRVRQRLRALLTGERRSSKETRLAQLVRRVEWRE 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNIL 87 T E+ ALL EA+ I L P FN Sbjct: 263 TGGELGALLAEADWIASLAPSFNRR 287 >gi|167903799|ref|ZP_02491004.1| possible DNA polymerase/helicase [Burkholderia pseudomallei NCTC 13177] Length = 349 Score = 85.2 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 41/85 (48%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 E P GVY + LYVG++ +++R+++ + + + T + + + + Sbjct: 203 LESAPAGCGVYALFGDGDAPLYVGRSVRVRQRLRALLTGERRSSKETRLAQLVRRVEWRE 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNIL 87 T E+ ALL EA+ I L P FN Sbjct: 263 TGGELGALLAEADWIASLAPSFNRR 287 >gi|167895415|ref|ZP_02482817.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 7894] Length = 350 Score = 85.2 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 41/85 (48%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 E P GVY + LYVG++ +++R+++ + + + T + + + + Sbjct: 203 LESAPAGCGVYALFGDGDAPLYVGRSVRVRQRLRALLTGERRSSKETRLAQLVRRVEWRE 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNIL 87 T E+ ALL EA+ I L P FN Sbjct: 263 TGGELGALLAEADWIASLAPSFNRR 287 >gi|167846824|ref|ZP_02472332.1| possible DNA polymerase/helicase [Burkholderia pseudomallei B7210] Length = 348 Score = 85.2 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 41/85 (48%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 E P GVY + LYVG++ +++R+++ + + + T + + + + Sbjct: 203 LESAPAGCGVYALFGDGDAPLYVGRSVRVRQRLRALLTGERRSSKETRLAQLVRRVEWRE 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNIL 87 T E+ ALL EA+ I L P FN Sbjct: 263 TGGELGALLAEADWIASLAPSFNRR 287 >gi|167825322|ref|ZP_02456793.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 9] Length = 352 Score = 85.2 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 41/85 (48%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 E P GVY + LYVG++ +++R+++ + + + T + + + + Sbjct: 203 LESAPAGCGVYALFGDGDAPLYVGRSVRVRQRLRALLTGERRSSKETRLAQLVRRVEWRE 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNIL 87 T E+ ALL EA+ I L P FN Sbjct: 263 TGGELGALLAEADWIASLAPSFNRR 287 >gi|167816919|ref|ZP_02448599.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 91] Length = 346 Score = 85.2 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 41/85 (48%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 E P GVY + LYVG++ +++R+++ + + + T + + + + Sbjct: 203 LESAPAGCGVYALFGDGDAPLYVGRSVRVRQRLRALLTGERRSSKETRLAQLVRRVEWRE 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNIL 87 T E+ ALL EA+ I L P FN Sbjct: 263 TGGELGALLAEADWIASLAPSFNRR 287 >gi|167739715|ref|ZP_02412489.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 14] Length = 323 Score = 85.2 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 41/85 (48%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 E P GVY + LYVG++ +++R+++ + + + T + + + + Sbjct: 203 LESAPAGCGVYALFGDGDAPLYVGRSVRVRQRLRALLTGERRSSKETRLAQLVRRVEWRE 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNIL 87 T E+ ALL EA+ I L P FN Sbjct: 263 TGGELGALLAEADWIASLAPSFNRR 287 >gi|167720732|ref|ZP_02403968.1| possible DNA polymerase/helicase [Burkholderia pseudomallei DM98] Length = 334 Score = 85.2 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 41/85 (48%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 E P GVY + LYVG++ +++R+++ + + + T + + + + Sbjct: 203 LESAPAGCGVYALFGDGDAPLYVGRSVRVRQRLRALLTGERRSSKETRLAQLVRRVEWRE 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNIL 87 T E+ ALL EA+ I L P FN Sbjct: 263 TGGELGALLAEADWIASLAPSFNRR 287 >gi|254192262|ref|ZP_04898751.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei Pasteur 52237] gi|157987457|gb|EDO95233.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei Pasteur 52237] Length = 310 Score = 85.2 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 41/85 (48%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 E P GVY + LYVG++ +++R+++ + + + T + + + + Sbjct: 132 LESAPAGCGVYALFGDGDAPLYVGRSVRVRQRLRALLTGERRSSKETRLAQLVRRVEWRE 191 Query: 63 TCTEVEALLLEANMIKRLKPRFNIL 87 T E+ ALL EA+ I L P FN Sbjct: 192 TGGELGALLAEADWIASLAPSFNRR 216 >gi|53720167|ref|YP_109153.1| DNA polymerase/helicase [Burkholderia pseudomallei K96243] gi|52210581|emb|CAH36564.1| possible DNA polymerase/helicase [Burkholderia pseudomallei K96243] Length = 381 Score = 85.2 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 41/85 (48%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 E P GVY + LYVG++ +++R+++ + + + T + + + + Sbjct: 203 LESAPAGCGVYALFGDGDAPLYVGRSVRVRQRLRALLTGERRSSKETRLAQLVRRVEWRE 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNIL 87 T E+ ALL EA+ I L P FN Sbjct: 263 TGGELGALLAEADWIASLAPSFNRR 287 >gi|76808562|ref|YP_334417.1| DNA polymerase/helicase [Burkholderia pseudomallei 1710b] gi|126455164|ref|YP_001067249.1| exonuclease DNA polymerase III subunit epsilon [Burkholderia pseudomallei 1106a] gi|134278018|ref|ZP_01764733.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 305] gi|217420886|ref|ZP_03452391.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 576] gi|242315973|ref|ZP_04814989.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 1106b] gi|254195634|ref|ZP_04902061.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei S13] gi|254261397|ref|ZP_04952451.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 1710a] gi|76578015|gb|ABA47490.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 1710b] gi|126228806|gb|ABN92346.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 1106a] gi|134251668|gb|EBA51747.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 305] gi|169652380|gb|EDS85073.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei S13] gi|217396298|gb|EEC36315.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 576] gi|242139212|gb|EES25614.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 1106b] gi|254220086|gb|EET09470.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 1710a] Length = 381 Score = 85.2 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 41/85 (48%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 E P GVY + LYVG++ +++R+++ + + + T + + + + Sbjct: 203 LESAPAGCGVYALFGDGDAPLYVGRSVRVRQRLRALLTGERRSSKETRLAQLVRRVEWRE 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNIL 87 T E+ ALL EA+ I L P FN Sbjct: 263 TGGELGALLAEADWIASLAPSFNRR 287 >gi|226197921|ref|ZP_03793495.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei Pakistan 9] gi|237813373|ref|YP_002897824.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei MSHR346] gi|254181036|ref|ZP_04887634.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 1655] gi|184211575|gb|EDU08618.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 1655] gi|225930109|gb|EEH26122.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei Pakistan 9] gi|237506315|gb|ACQ98633.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei MSHR346] Length = 381 Score = 85.2 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 41/85 (48%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 E P GVY + LYVG++ +++R+++ + + + T + + + + Sbjct: 203 LESAPAGCGVYALFGDGDAPLYVGRSVRVRQRLRALLTGERRSSKETRLAQLVRRVEWRE 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNIL 87 T E+ ALL EA+ I L P FN Sbjct: 263 TGGELGALLAEADWIASLAPSFNRR 287 >gi|134295037|ref|YP_001118772.1| DNA polymerase III subunit epsilon [Burkholderia vietnamiensis G4] gi|134138194|gb|ABO53937.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4] Length = 375 Score = 85.2 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 41/85 (48%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + P G Y + LYVG++ +++R+++ + + + + Q+ + + Sbjct: 203 LDTAPAGCGAYALFGEGDEALYVGRSVRVRQRLRALLTGERRSSKEMRIAQQVRRVEWRE 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNIL 87 T E+ A+L EA I RL+P +N Sbjct: 263 TGNELGAMLAEAQWIARLRPAYNRR 287 >gi|325524698|gb|EGD02688.1| putative DNA polymerase/helicase [Burkholderia sp. TJI49] Length = 374 Score = 84.8 bits (208), Expect = 4e-14, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 41/85 (48%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + P G Y + A LYVG++ +++R+++ + + + + Q+ I + Sbjct: 203 LDTAPAGCGAYALFGEADAPLYVGRSVRVRQRLRALLTGERRSAKEMRLAQQVRRIEWRE 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNIL 87 T E+ A+L EA I RL P FN Sbjct: 263 TGNELGAMLAEAQWIARLSPSFNRR 287 >gi|11499994|ref|NP_071240.1| DNA repair protein, putative [Archaeoglobus fulgidus DSM 4304] gi|2650671|gb|AAB91244.1| DNA repair protein, putative [Archaeoglobus fulgidus DSM 4304] Length = 208 Score = 84.4 bits (207), Expect = 6e-14, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 29/52 (55%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 L I GIG + LL FG+++ I+ +S L ++GI +K A +IY F Sbjct: 157 LTAIPGIGEKKAEKLLDYFGSIQRIANASIAELKRVDGIGEKKAREIYRFFR 208 >gi|297518898|ref|ZP_06937284.1| nucleotide excision repair endonuclease [Escherichia coli OP50] Length = 91 Score = 84.0 bits (206), Expect = 7e-14, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 5/66 (7%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +P PGVY + LY+GK+ N++ R+ S++ + + M+ Q I + T Sbjct: 30 DLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85 Query: 64 CTEVEA 69 E+ A Sbjct: 86 AGEIGA 91 >gi|238026493|ref|YP_002910724.1| exonuclease, DNA polymerase III subunit epsilon family/GIY-YIG catalytic domain-containing protein [Burkholderia glumae BGR1] gi|237875687|gb|ACR28020.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia glumae BGR1] Length = 381 Score = 83.6 bits (205), Expect = 8e-14, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 5/105 (4%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E+ P G Y + LYVG++ ++ R+++ + + R + Q+ + + Sbjct: 206 DLERAPSGCGAYALFGEGDAPLYVGRSVRVRNRLRALLTGERRSARERRLAEQVRRVEWR 265 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIP 106 T E+ A+L EA+ I L P FN D + T P Sbjct: 266 ETGGELGAMLAEAHWIAALSPAFNRKAGDAR-----RGTAGEPWP 305 >gi|167586484|ref|ZP_02378872.1| DNA polymerase III, epsilon subunit [Burkholderia ubonensis Bu] Length = 375 Score = 83.6 bits (205), Expect = 9e-14, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 42/85 (49%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + P G Y + A LYVG++ +++R+++ + + + + Q+ + + Sbjct: 203 LDTAPAGCGAYALFGEADEPLYVGRSVRVRQRLRALLTGERRSSKELRLAQQVRRVEWRG 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNIL 87 T E+ A+L EA I RL+P FN Sbjct: 263 TGNELGAMLAEAQWIARLRPTFNRR 287 >gi|171315543|ref|ZP_02904779.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5] gi|171099380|gb|EDT44118.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5] Length = 375 Score = 83.6 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 42/90 (46%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + P G Y + LYVG++ +++R+++ + + + + Q+ + + Sbjct: 203 LDTAPAGCGAYALFGEGDEALYVGRSVRVRQRLRALLTGERRSSKEMRLAQQVRRVEWRE 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDK 92 T E+ A+L EA I RL+P N DK Sbjct: 263 TGNELGAMLAEAQWIARLRPSHNRRPAADK 292 >gi|170698522|ref|ZP_02889593.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria IOP40-10] gi|170136606|gb|EDT04863.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria IOP40-10] Length = 375 Score = 82.8 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 41/90 (45%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + P G Y + LYVG++ +++R+++ + + + + + I + Sbjct: 203 LDTAPAGCGAYALFGEGDEALYVGRSVRVRQRLRALLTGERRSSKEMRLAQLVRRIEWRE 262 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDK 92 T E+ A+L EA I RL+P N DK Sbjct: 263 TGNELGAMLAEAQWIARLRPSHNRRPAADK 292 >gi|326335468|ref|ZP_08201655.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692234|gb|EGD34186.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 453 Score = 82.5 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 43/191 (22%), Positives = 86/191 (45%), Gaps = 9/191 (4%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P G+Y + D G+++++ K+ N+ KR+ + S N R ++ + I + + Sbjct: 190 LDTLPNQLGIYYIYDKKGKLIFLSKSKNIYKRVNEHFTSENK--RDLYIQKHVGEIMYEL 247 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILI--TDKHKIPALYKHRDSSTIQGS 120 T T + A L EA +++ KP N + KSFP++L+ T++ L + Sbjct: 248 TGTTLIATLKEAQELQK-KPFLNRK-KKKKSFPFVLVAHTNEKGYIQLSI--EFVNTSQE 303 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 F S + + L + L + + + T C I +C G C G+ ++Y Sbjct: 304 NLAIFESKEEGLNLLFELTERYQLCTKLNGFSKAHTY-CYNHSIGQCKGACMGDEPFDEY 362 Query: 181 MEFVHEAKKFL 191 + V++A + Sbjct: 363 NQRVYKALEHY 373 >gi|299135636|ref|ZP_07028820.1| excinuclease ABC [Acidobacterium sp. MP5ACTX8] gi|298601760|gb|EFI57914.1| excinuclease ABC [Acidobacterium sp. MP5ACTX8] Length = 482 Score = 82.5 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 43/199 (21%), Positives = 82/199 (41%), Gaps = 29/199 (14%) Query: 47 RITHMISQINNIRFTVTCTEVE-ALLLEA-------------NMIKRLKPRFNILLRDDK 92 + ++ ++ I +T T +E E AL+L + RL P + Sbjct: 75 KRLNLREKVRWIEWTATGSEFESALVLYCASRAVYGAEEARRRL--RLHPPY-------- 124 Query: 93 SFPYILITDKHKIPALYKH-RDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSV 151 ++ +T H+ P +Y R S FGPF S A E+ +++ F LR C + + Sbjct: 125 ---FLRVTMTHEHPRVYSTNRLSKRALAETFGPFPSRAAAERYCDAVLDLFKLRRCYEDL 181 Query: 152 FRHRTRP-CLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQAT 210 + P C+ ++K+C PC S+E+Y +F + ++ ++A +A+ Sbjct: 182 QPYPEHPGCVYGEMKKCMEPCKLACSAEEYAAEAQRVFRFFATSGESMLAEVAALREKAS 241 Query: 211 LKEDYESAIIHRDRLAALS 229 D+E A + + Sbjct: 242 AAMDFEEAAALHKQWERVK 260 >gi|256026592|ref|ZP_05440426.1| excinuclease ABC subunit C [Fusobacterium sp. D11] Length = 53 Score = 80.9 bits (198), Expect = 5e-13, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMI 52 ++PE GVY M +V+YVGKA NL+KR+ SY + + + + ++ Sbjct: 7 EIPESSGVYLMK-KNNKVIYVGKAKNLKKRVSSYFNRVHESEKTNELV 53 >gi|325955054|ref|YP_004238714.1| DNA polymerase III subunit epsilon [Weeksella virosa DSM 16922] gi|323437672|gb|ADX68136.1| DNA polymerase III, epsilon subunit [Weeksella virosa DSM 16922] Length = 453 Score = 80.9 bits (198), Expect = 7e-13, Method: Composition-based stats. Identities = 43/250 (17%), Positives = 87/250 (34%), Gaps = 18/250 (7%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFT 61 E +P G++ + ++++G++ N+ R+ Y S N + +I I + Sbjct: 189 LENLPTKTGLFYFYNRLDDIIFIGRSSNIAYRVNRYFSSKNFESSKIKR---YTKYITYE 245 Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKS-FPYILITDKHKIPALYKHRDSSTIQGS 120 VT +E+ A + E + I +P NI + K+ + I K L + Sbjct: 246 VTGSELLAEIKEVHEINLNQPFLNIKIIKSKTPYGLYFIPSKRSYHRLEIGKGRKAEPIL 305 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSC---ADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177 F A ++T + L ++ + + C +++ +C G C + + Sbjct: 306 TF-------ARKETALEFLQKVTLEYNLCPKINLLQPSSASCFSYEMGQCKGACIRKENP 358 Query: 178 EKYMEFVHEA--KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIH-RDRLAALSHIQNH 234 + Y E V + L +K + A D + + L + Sbjct: 359 KTYNERVEALVNRTNYPTETFILSDKGRKTGEHAFFFIDQGKFVGYGYYELHHQIKNRER 418 Query: 235 NDSIYNRMDC 244 I N D Sbjct: 419 IMKIVNPFDT 428 >gi|322436945|ref|YP_004219157.1| excinuclease ABC, C subunit [Acidobacterium sp. MP5ACTX9] gi|321164672|gb|ADW70377.1| excinuclease ABC, C subunit [Acidobacterium sp. MP5ACTX9] Length = 484 Score = 80.5 bits (197), Expect = 7e-13, Method: Composition-based stats. Identities = 48/242 (19%), Positives = 97/242 (40%), Gaps = 30/242 (12%) Query: 5 QMPECPGVYQMLDIAG--RVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 Q+P PGV+ + Y+ +A +L++R+ + R ++ ++ I + V Sbjct: 35 QIPTLPGVFALRGERDTDEP-YLTRAADLRRRMTRLLAPPESQSRRLNLSQKVTTIAWCV 93 Query: 63 TCTEVEA-LLLEANM------------IKRLKPRFNILLRDDKSFPYILITDKHKIPALY 109 T +E E+ L+L + +K P F + T +H P +Y Sbjct: 94 TGSEFESTLVLYDALAAQFGHPEARRRMKLHTPTF------------LRFTAEHAHPRVY 141 Query: 110 KHRDSSTIQ-GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP-CLLFQIKRC 167 S + +GPF S A E+ +++ F LR C + + + P C ++K+C Sbjct: 142 STNKLSRRSLDNTYGPFQSRTAAERYCDAVLDLFKLRRCHEDLEVSPSHPGCAYGEMKKC 201 Query: 168 SGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAA 227 PC ++++Y K F ++ I+ + +A+ ++E A + Sbjct: 202 MAPCNQTCTADEYAAESAAVKAFFDTHGDSMLAAISADRERASSDMEFEQAAALHTQYTK 261 Query: 228 LS 229 + Sbjct: 262 VK 263 >gi|213418951|ref|ZP_03352017.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 97 Score = 80.1 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 34/77 (44%), Positives = 49/77 (63%), Gaps = 1/77 (1%) Query: 96 YILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR 155 +I ++ P L HR + +G YFGPF + AV +T+ LQ+ F +R C +SV+R+R Sbjct: 6 FIFLS-GDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR 64 Query: 156 TRPCLLFQIKRCSGPCT 172 +RPCL +QI RC GPC Sbjct: 65 SRPCLQYQIGRCLGPCV 81 >gi|226941443|ref|YP_002796517.1| DNA-directed DNA polymerase III [Laribacter hongkongensis HLHK9] gi|226716370|gb|ACO75508.1| Probable DNA-directed DNA polymerase III [Laribacter hongkongensis HLHK9] Length = 493 Score = 79.0 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 74/175 (42%), Gaps = 8/175 (4%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +P+ PGV++++ G VL+VGKA NL+ + Y + + +++ ++ + T Sbjct: 197 DHLPDVPGVFRLMAADGTVLHVGKAANLRASVLRYFQPRVRNQKEARLAARVASVVWDET 256 Query: 64 CTEVEALLLEANMIKRL-KPRFNILLRDDKSFPYILITDKH-----KIPALYKHRDSSTI 117 E A L E ++ +L P R D++ + +P + + Sbjct: 257 LGEFGAALREVRILGQLPAPLAGGKGRADETALSWRLVADEQGYLGPVP-VPLAEALAGH 315 Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPC 171 G FG F + ++ + + ++ L + + R RPC + RC G C Sbjct: 316 AGRCFGVFRNPREAQRLLATFADSYKLCCKRLGLEQSRSGRPCSAHSLGRCRGAC 370 >gi|326791316|ref|YP_004309137.1| excinuclease ABC C subunit domain protein [Clostridium lentocellum DSM 5427] gi|326542080|gb|ADZ83939.1| Excinuclease ABC C subunit domain protein [Clostridium lentocellum DSM 5427] Length = 67 Score = 78.6 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 26/45 (57%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH 46 ++ + PGVY M D G V+YVGK+ +L+ R+ SY S H Sbjct: 9 QAKNLSLTPGVYLMKDREGYVIYVGKSKHLKNRVSSYFGSLKHVP 53 >gi|292492317|ref|YP_003527756.1| ERCC4 domain protein [Nitrosococcus halophilus Nc4] gi|291580912|gb|ADE15369.1| ERCC4 domain protein [Nitrosococcus halophilus Nc4] Length = 236 Score = 77.8 bits (190), Expect = 5e-12, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%) Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 KRR + L + GIGP R R LL FG+V+ + + E L ++ GI K++A I Sbjct: 163 KRRTQLTL--LQGLPGIGPERARQLLAHFGSVEAVLNAHLEELMTVPGIGKEVARGIRWA 220 Query: 607 FHKNTSH 613 ++ + Sbjct: 221 VNERETE 227 >gi|34496475|ref|NP_900690.1| DNA-directed DNA polymerase III subunit epsilon [Chromobacterium violaceum ATCC 12472] gi|34102328|gb|AAQ58694.1| probable DNA-directed DNA polymerase III (epsilon subunit) [Chromobacterium violaceum ATCC 12472] Length = 481 Score = 77.5 bits (189), Expect = 6e-12, Method: Composition-based stats. Identities = 44/199 (22%), Positives = 71/199 (35%), Gaps = 29/199 (14%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRIT--HMISQINNIR 59 E MP+ GVY + GR LYVG+A NL ++ + H+ + + + Sbjct: 196 QIEDMPDSAGVYALFGADGRALYVGRAPNLYRKALGHFAERKPGHKSHEVRIDEPVARVE 255 Query: 60 FTVTCTEVEALLLEANMIKRLKPRFNILLR-------------DDKSFPYILITDKHKIP 106 + E A L E + RL+P N R DD Y+ P Sbjct: 256 WRECLGEFGARLQELQWLGRLQPLHNPRARMMGEICTLQVQAGDDG---YVR-------P 305 Query: 107 ALYKHRDSS-TIQGSYFGPFASVDAVEKTINSLQRTFFLRSC---ADSVFRHRTRPCLLF 162 RD + +G F K + + L + V + PC + Sbjct: 306 LPVSARDIDFSRTADLYGLFRHAREARKALAQIALAQGLCQSVLGVEQVTSRKGAPCAAY 365 Query: 163 QIKRCSGPCTGEISSEKYM 181 +I+RC G C G+ ++ + Sbjct: 366 RIRRCRGACVGDEGADSHN 384 >gi|213962688|ref|ZP_03390949.1| DNA polymerase III, epsilon subunit [Capnocytophaga sputigena Capno] gi|213954683|gb|EEB66004.1| DNA polymerase III, epsilon subunit [Capnocytophaga sputigena Capno] Length = 442 Score = 76.7 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 2/83 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +PE GV+ + + G+++YVGK N++ R+ + S + R ++ + + Sbjct: 190 LDALPETLGVFYIHNKEGKIIYVGKHKNIKGRVNQLLTSP--SKRDRYLQRHTYKVTYEE 247 Query: 63 TCTEVEALLLEANMIKRLKPRFN 85 E+ A L E +I+ P+ N Sbjct: 248 MGNELIATLKELELIQLNNPKCN 270 >gi|320105770|ref|YP_004181360.1| Nuclease subunit of the excinuclease complex [Terriglobus saanensis SP1PR4] gi|319924291|gb|ADV81366.1| Nuclease subunit of the excinuclease complex [Terriglobus saanensis SP1PR4] Length = 414 Score = 75.9 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 56/285 (19%), Positives = 115/285 (40%), Gaps = 36/285 (12%) Query: 5 QMPECPGVYQMLD--IAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + P GV+ + R Y+ K+ N+++R++ + + + ++ +I + ++ Sbjct: 14 EAPAGCGVFALYGAGEGDRP-YLAKSGNIRRRLQRLLEPSEGQTKRLNLRDRIARVAWSR 72 Query: 63 TCTEVEALLL------------EANMIKRLK--PRFNILLRDDKSFPYILITDKHKIPAL 108 T ++ E++LL E KRLK P + + T +++ P + Sbjct: 73 TGSDFESVLLLYRASSEAFGRDETR--KRLKLYPPY-----------VVRFTVENRFPRM 119 Query: 109 YKH-RDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP-CLLFQIKR 166 Y R + +GPFAS + E+ ++ + F LR C + + P C ++K+ Sbjct: 120 YVTSRLGRRTLHTSYGPFASRASAERYVDGVNELFHLRRCHEELVPFPEHPGCAYGEMKK 179 Query: 167 CSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA 226 CS PC ++ ++Y FL+ +L EKIA +A+ ++E+A +R Sbjct: 180 CSAPCQARVTDDEYRAEADAVLDFLATRGESLLEKIAAEREKASEDMEFEAAAAAHERYV 239 Query: 227 ALSHIQNHNDSIYNRMDCFSLYHN----KNLACIQTCFFHFGQNR 267 + + +D ++ A +Q G Sbjct: 240 EVKATAALAGELVRPLDKLRGVVFLPAAEDAAVVQVWLMQGGCLH 284 >gi|2661731|emb|CAA64810.1| uvrC-like protein [Pectobacterium carotovorum] Length = 51 Score = 75.9 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 18/40 (45%), Positives = 27/40 (67%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN 42 + + PGVY+M D+ V+YVGKA +L+KR+ SY S+ Sbjct: 11 LKTVTSQPGVYRMYDVGNTVIYVGKAKDLKKRLASYFRSH 50 >gi|288930501|ref|YP_003434561.1| ERCC4 domain protein [Ferroglobus placidus DSM 10642] gi|288892749|gb|ADC64286.1| ERCC4 domain protein [Ferroglobus placidus DSM 10642] Length = 213 Score = 75.1 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 31/52 (59%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 L I GIG R + LL+ FG ++ I+ +S L +EGI +K A +IY+ F Sbjct: 157 LTAIPGIGEERAKRLLEKFGNLQRIANASLYELMRVEGIGEKYARRIYDAFR 208 >gi|207110420|ref|ZP_03244582.1| excinuclease ABC subunit C [Helicobacter pylori HPKX_438_CA4C1] Length = 105 Score = 75.1 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 8/104 (7%) Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKF 510 +++ P++ ++DGG+ QL+ A +LK + + +I+I+K + G + Sbjct: 2 DFAKEPPPNLWVIDGGRAQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRAKGGAKDI 59 Query: 511 FVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY 554 + L D L ++Q+LRDE+HR+AI HR + K Sbjct: 60 IHTPSDTFKLLPSDKRLQWVQKLRDESHRYAINFHRSTKLKNMK 103 >gi|330815857|ref|YP_004359562.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia gladioli BSR3] gi|327368250|gb|AEA59606.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia gladioli BSR3] Length = 388 Score = 74.0 bits (180), Expect = 7e-11, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 38/86 (44%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 E+ P G Y + L+VG++ ++ R+++ + + + + Q+ + + Sbjct: 202 DLERAPAGFGAYALFGEGDAPLFVGRSVRVRNRLRALLGGERRSAKERRLAEQVRRVEWR 261 Query: 62 VTCTEVEALLLEANMIKRLKPRFNIL 87 T E+ A+L E I L P FN Sbjct: 262 ETGGELGAMLAETAWIAELSPAFNRK 287 >gi|116626337|ref|YP_828493.1| UvrB/UvrC protein [Candidatus Solibacter usitatus Ellin6076] gi|116229499|gb|ABJ88208.1| UvrB/UvrC protein [Candidatus Solibacter usitatus Ellin6076] Length = 370 Score = 73.2 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 57/311 (18%), Positives = 113/311 (36%), Gaps = 11/311 (3%) Query: 47 RITHMISQINNIRFTVTCTEVEALLL--EANMIKRLKP-RFNILLRDDKSFPYILITDKH 103 R+ ++ + I + +T + E+ ++ EA +R P R+ + L + PY+ + + Sbjct: 60 RLLNLRHTVARIEYQLTGSAFESSVVFYEAA--RRHFPERY-LQLMKLRMPPYLKVVLGN 116 Query: 104 KIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP-CLLF 162 + P + G YFGPF S + E+ F +R C + + P C+ Sbjct: 117 EFPRSQITTQLTRSAGLYFGPFRSRASAERFEGQFLDLFQMRRCQEDLIPTPEHPGCIYG 176 Query: 163 QIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHR 222 ++ C PC + E+Y V +FL +L E I + ++ + + +E A Sbjct: 177 EMAMCLRPCQQVVGREEYGHEVDRVVEFLRTDGRSLLESIGHSRDRLSEEMMFEEAARQH 236 Query: 223 DRLAALSHIQNHNDSIYNRMDCF-SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST 281 R + + D + +D + +LA + + + + Sbjct: 237 KRFEKVQEVLRLRDELVREVDGLNGVAITPSLAHDAVEMWFVREGTWCRPERFGFEVQEG 296 Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGE--KRK 339 L LR P + + E E +LL ++ + + E RK Sbjct: 297 KPVSLDRKLRDLLAGVQ-PRKLSVRERQEYLALLARWYYSTWREGEWLNFESYDEIPYRK 355 Query: 340 IIEQALINAHR 350 ++ A R Sbjct: 356 LVNAVSRVARR 366 >gi|74151355|dbj|BAE38800.1| unnamed protein product [Mus musculus] Length = 221 Score = 72.1 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 8/74 (10%) Query: 548 RRKKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 R+K++ S L +I G+G ++ RLLLQ F +++ +S +S + L + G A Sbjct: 148 RKKRSMLSELSLVQTVQQIPGVGKVKARLLLQKFPSIQQLSNASVQELEEVVG--PAAAQ 205 Query: 602 KIYNHFHKNTSHTP 615 +I+ F + P Sbjct: 206 QIHTFFTQPKRQQP 219 >gi|256818923|ref|YP_003140202.1| DNA polymerase III, epsilon subunit [Capnocytophaga ochracea DSM 7271] gi|256580506|gb|ACU91641.1| DNA polymerase III, epsilon subunit [Capnocytophaga ochracea DSM 7271] Length = 442 Score = 71.3 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 2/85 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +PE G++ M + G+V+Y+GK N+++++ S + R ++ + + Sbjct: 190 LDTLPETLGIFYMHNEEGKVIYIGKHKNIKQQVNRLFTSP--SKRDRYLQRHTYRVTYQE 247 Query: 63 TCTEVEALLLEANMIKRLKPRFNIL 87 T E+ A L I P+ N Sbjct: 248 TGNELIATLKRLEEIHLNLPKCNRR 272 >gi|315224304|ref|ZP_07866138.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga ochracea F0287] gi|314945694|gb|EFS97709.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga ochracea F0287] Length = 442 Score = 70.9 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 2/85 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +PE G++ M + G+V+Y+GK N+++++ S + + ++ + + Sbjct: 190 LDTLPETLGIFYMHNEEGKVIYIGKHKNIKQQVNRLFTSPSKRDK--YLQRHTYRVTYQE 247 Query: 63 TCTEVEALLLEANMIKRLKPRFNIL 87 T E+ A L I P+ N Sbjct: 248 TGNELIATLKRLEEIHLNLPKCNRR 272 >gi|255513551|gb|EET89817.1| ERCC4 domain protein [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 222 Score = 70.9 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 25/47 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 I IGP LL FG++K IS ++ E L ++ I K A KI+ Sbjct: 163 NIPDIGPKIATALLLHFGSIKAISEATIEELCRVDKIGPKKAEKIFK 209 >gi|110597593|ref|ZP_01385878.1| DNA processing protein DprA, putative [Chlorobium ferrooxidans DSM 13031] gi|110340713|gb|EAT59190.1| DNA processing protein DprA, putative [Chlorobium ferrooxidans DSM 13031] Length = 375 Score = 70.9 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF-H 608 K L I GIGP R + L+ + + ++ E L +I GI + +A +I+++ H Sbjct: 3 KSMLLLALTLIPGIGPSRIKALINHLPDINDVLQADVEALKTIPGIGEPLARQIHDYLAH 62 Query: 609 KNTSHT 614 T Sbjct: 63 SETRAA 68 >gi|254166800|ref|ZP_04873654.1| ERCC4 domain protein [Aciduliprofundum boonei T469] gi|289596077|ref|YP_003482773.1| ERCC4 domain protein [Aciduliprofundum boonei T469] gi|197624410|gb|EDY36971.1| ERCC4 domain protein [Aciduliprofundum boonei T469] gi|289533864|gb|ADD08211.1| ERCC4 domain protein [Aciduliprofundum boonei T469] Length = 221 Score = 70.9 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 30/53 (56%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 L + IG + LL+ FG+++ I+R++ L +EGI K A +IY FH Sbjct: 169 ALSSLPYIGEKIAKALLEHFGSIEKIARANIVELKKVEGIGDKKARQIYRIFH 221 >gi|239618216|ref|YP_002941538.1| DNA ligase, NAD-dependent [Kosmotoga olearia TBF 19.5.1] gi|239507047|gb|ACR80534.1| DNA ligase, NAD-dependent [Kosmotoga olearia TBF 19.5.1] Length = 672 Score = 70.5 bits (171), Expect = 8e-10, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Query: 547 KRRKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K RK+ + L I G+G R L + F T+ + ++ + L + GI ++A I Sbjct: 501 KSRKRPLHKLLAGLGIPGVGVKLARDLAEHFKTLDALQNATIDQLLEVPGIGLELAKNIV 560 Query: 605 NHFH 608 F+ Sbjct: 561 EFFN 564 >gi|49240338|gb|AAT58040.1| UvrC [Mycoplasma synoviae] Length = 304 Score = 70.5 bits (171), Expect = 9e-10, Method: Composition-based stats. Identities = 61/324 (18%), Positives = 118/324 (36%), Gaps = 37/324 (11%) Query: 87 LLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFGPFASVDAVEKTINSLQRTFFLR 145 +L DDK +PY+ I K + +R S + Y+GP+ + + LQR F Sbjct: 2 MLLDDKQYPYLNIKIKDSLEIKQTYRVSKNSEFNIYYGPYPQSHLFK-FVKILQRIFLYN 60 Query: 146 SCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARN 205 G + ++E + K+ L N++ + Sbjct: 61 Q----------------------GLLIKDKPKMYWIEKFNTLKEILKFKNNDFNNLLKEK 98 Query: 206 MNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQ 265 M A ++E+AI ++ L +S + ++ + ++ + F+ Sbjct: 99 MLAAADNLNFEAAIEYQKALEFISQFKEKQIIEISKYKNYDVFSFEEKNESIAIFYMLYI 158 Query: 266 NRGTCTFFLKTDSESTNAQI-LSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYG 324 F K + + +S FL++FY +K P+NI+L + ++ +L K Sbjct: 159 YGVQNIFQRKIIENYDSLENIISNFLKEFYKNKALPDNIILDYKYKDLNLDLDFKSK--- 215 Query: 325 YKVKITVPKQGEKRKIIEQALINAHRSHTQKLST----EISHQMILKDFTKKFALPHIPK 380 I P++G +I+ A N + + L+ E + K+ + L Sbjct: 216 ----IIFPQKGINHDLIKLANENNNSGYESYLNQKIILEQHKLNLWKNLASELFLD-KLN 270 Query: 381 RIEIYDNSHIMGCSAVGCMVVVGE 404 I I+DNSH S + + Sbjct: 271 SIFIFDNSHFNNSSPIASCICYTN 294 >gi|254168497|ref|ZP_04875341.1| ERCC4 domain protein [Aciduliprofundum boonei T469] gi|197622552|gb|EDY35123.1| ERCC4 domain protein [Aciduliprofundum boonei T469] Length = 221 Score = 70.5 bits (171), Expect = 9e-10, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 30/53 (56%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 L + IG + LL+ FG+++ I+R++ L +EGI K A +IY FH Sbjct: 169 ALSSLPYIGEKIAKALLEHFGSIEKIARANIVELKKVEGIGNKKARQIYRIFH 221 >gi|225874186|ref|YP_002755645.1| excinuclease ABC, C subunit homolog [Acidobacterium capsulatum ATCC 51196] gi|225791503|gb|ACO31593.1| excinuclease ABC, C subunit homolog [Acidobacterium capsulatum ATCC 51196] Length = 405 Score = 70.1 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 43/208 (20%), Positives = 79/208 (37%), Gaps = 31/208 (14%) Query: 41 SNNHTHRITHMISQINNIRFTVTCTEVEALL--------------LEANMIKRLKPRFNI 86 + R+ + +QI I +T T +E EALL E + Sbjct: 55 KPEQSKRLQ-LAAQIRRIEYTRTGSEFEALLCLYQASVEAMGERARER-----------M 102 Query: 87 LLRDDKSFPYILITDKHKIPALY-KHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLR 145 LR ++ ++ +++ P +Y R + FGPF S E+ + + F LR Sbjct: 103 HLRAP---VFLRMSMQNEFPRVYPATRLTLKAAEDLFGPFPSRWMAERWLEQMLNLFLLR 159 Query: 146 SCA-DSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIAR 204 C D C+ ++++C PC + +Y E FL+ +L+ ++A Sbjct: 160 RCQEDLEPDPAFAGCIYSEMRKCLAPCFEGCTRARYDEEAAAVHDFLATRGESLRARLAA 219 Query: 205 NMNQATLKEDYESAIIHRDRLAALSHIQ 232 A+ D+E A R+ + + Sbjct: 220 EREAASEALDFEKAAEVHARVERVDEVM 247 >gi|530455|emb|CAA83786.1| excinuclease ABC (C) [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 169 Score = 69.7 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 67/175 (38%), Gaps = 21/175 (12%) Query: 393 CSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFH 452 G +V V N++RK+N+ M +R ++ + E+ Sbjct: 15 SFITGAGIVYXNAKPVXNKFRKYNIDSQYTSDYARMKFMLE--KRFLKRIKEKEQ----- 67 Query: 453 PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV 512 PD++I+DGG Q+ AA+ VL KLN+ +I +I ++K Sbjct: 68 ----------LPDLIIVDGGIIQIHAAKEVLNKLNL--KINVIGLSKDNNHKTRYLIDIF 115 Query: 513 KKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLR 567 + + + + + F+ L+ +A + RK+ + I G+G Sbjct: 116 E--QTIDIKNFKKLYNFLTSLQIRVDEYAKSGFRKKYHNQLNDQILLIKGVGKKT 168 >gi|91790880|ref|YP_551831.1| ERCC4 [Polaromonas sp. JS666] gi|91700760|gb|ABE46933.1| ERCC4 [Polaromonas sp. JS666] Length = 217 Score = 69.7 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 27/50 (54%) Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + + G GP + LL FG+ + + +S + L +++GI +K A +I Sbjct: 161 EGLPGCGPGTAKKLLGHFGSAERVFAASVDELCAVKGIGRKTADQIRELL 210 >gi|255029283|ref|ZP_05301234.1| hypothetical protein LmonL_09458 [Listeria monocytogenes LO28] Length = 213 Score = 69.4 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 54/212 (25%), Positives = 94/212 (44%), Gaps = 14/212 (6%) Query: 154 HRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKE 213 RPCL + + C GPC EI Y + +H+ +FL G N+K+K+ +M AT Sbjct: 1 KPGRPCLYYHLGLCLGPCQAEIEPAVYKKQIHKIXRFLEGDVKNVKDKLLGDMLTATENL 60 Query: 214 DYESAIIHRDRLAALSHIQNHNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTC 270 ++E A RD++ A++ I+ D Y N + F G G+ Sbjct: 61 EFERAAELRDKIHAINETIEKQHIIFPGLKNRDIIGCYEQDNYLSVFVFFVRNGAINGSK 120 Query: 271 TFFLKTDSESTNAQILSYFLRQFYTD--KPCPENILLSEEAEETSLLEISFFKQYGYKVK 328 + E T + L+ FL QFY D P+ +L++E+ +++ L E + Sbjct: 121 WHVFQV--EKTLQEELATFLNQFYEDPNNIQPKELLIAEKIDKSLLNE-------PLRKA 171 Query: 329 ITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 P++G K+K ++ A+ NA ++ + Sbjct: 172 CLFPQKGSKKKQVDLAIENAKSAYIAYAKMKE 203 >gi|307352953|ref|YP_003894004.1| helicase domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307156186|gb|ADN35566.1| helicase domain protein [Methanoplanus petrolearius DSM 11571] Length = 766 Score = 69.4 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 16/129 (12%) Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536 +A +G L +++ ITII K + +A M + E+ + P + Sbjct: 647 NAIRGALAAMSIGMGITIIQ-TKDAEDTAEMLYVLAGREESEYGPSKSPHFH-------- 697 Query: 537 AHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 T R R ++ + IGP R LL FG+++ I ++ E L + GI Sbjct: 698 -----KTY-RSER-ESLEYVISSFPSIGPKNARDLLDHFGSIQDIMNANIEELKVVPGIG 750 Query: 597 KKIACKIYN 605 KIA ++ Sbjct: 751 DKIAKSVFE 759 >gi|332977611|gb|EGK14379.1| NAD-dependent DNA ligase LigA [Psychrobacter sp. 1501(2011)] Length = 695 Score = 69.0 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%) Query: 550 KKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 KK S I G+G + L + FG + + +S E+L ++ I A +IY+ Sbjct: 528 KKTTLSRFIYAIGIKGVGETTAQNLAKHFGDLPALMDASIESLEAVPDIGTITAEQIYDF 587 Query: 607 FH 608 F Sbjct: 588 FR 589 >gi|157818947|ref|NP_001102805.1| hypothetical protein LOC502320 [Rattus norvegicus] gi|149056194|gb|EDM07625.1| similar to RIKEN cDNA C230052I12 (predicted) [Rattus norvegicus] Length = 221 Score = 69.0 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 6/68 (8%) Query: 544 THRKRRKKAAYSPL----DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 RK+R + S L +I G+G ++ LLLQ F +++ +S +S + L + G + + Sbjct: 146 FLRKKRSMLSESSLVQTVQQIPGVGKVKAPLLLQKFPSIQQLSNASTQELEEVVG--RTV 203 Query: 600 ACKIYNHF 607 A +I+ F Sbjct: 204 AQQIHTFF 211 >gi|30519993|ref|NP_848758.1| Fanconi anemia-associated protein of 24 kDa [Mus musculus] gi|81913153|sp|Q8BHL6|FAP24_MOUSE RecName: Full=Fanconi anemia-associated protein of 24 kDa gi|26327417|dbj|BAC27452.1| unnamed protein product [Mus musculus] gi|26333665|dbj|BAC30550.1| unnamed protein product [Mus musculus] gi|26349711|dbj|BAC38495.1| unnamed protein product [Mus musculus] gi|66794596|gb|AAH96687.1| RIKEN cDNA C230052I12 gene [Mus musculus] gi|148671072|gb|EDL03019.1| RIKEN cDNA C230052I12 [Mus musculus] Length = 221 Score = 69.0 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 8/74 (10%) Query: 548 RRKKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 R+K++ S L +I G+G ++ LLLQ F +++ +S +S + L + G A Sbjct: 148 RKKRSMLSELSLVQTVQQIPGVGKVKAPLLLQKFPSIQQLSNASVQELEEVVG--PAAAQ 205 Query: 602 KIYNHFHKNTSHTP 615 +I+ F + P Sbjct: 206 QIHTFFTQPKRQQP 219 >gi|297184143|gb|ADI20262.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11] Length = 442 Score = 68.2 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 65/167 (38%), Gaps = 17/167 (10%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRIT-HMISQINNIR 59 + + M G+Y + + G +YVG + +LQ I + ++N +I + S+ + Sbjct: 188 LQVKNMQNKVGIYYIYNEEGEAIYVGSSKDLQNSINRHFVADN---KIALALQSEATTLE 244 Query: 60 FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPY--ILITDKH----KIPALYKHRD 113 E A +L + + + +P +N+ + K F I I K ++ R Sbjct: 245 VEELGNEAVAEVLVRSTLDKHRPVYNVTKK--KHFLNFGIFIDAKKGAEIDHVRIFPVRY 302 Query: 114 SSTIQGSYF-GPFASVDAVEKTI--NSLQRTFFLRSCADSVFRHRTR 157 + YF GP + ++K + L FL + TR Sbjct: 303 KAPD--FYFEGPKSIYPWLQKMMMSEGLDPHTFLLDRDREHYNKHTR 347 >gi|124262836|ref|YP_001023306.1| helicase-associated endonuclease for fork-structured DNA [Methylibium petroleiphilum PM1] gi|124262082|gb|ABM97071.1| helicase-associated endonuclease for fork-structured DNA [Methylibium petroleiphilum PM1] Length = 216 Score = 68.2 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 28/51 (54%) Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 + + G+GP R + ++ FG+V ++ + LA + G+ K A K++ H Sbjct: 163 EGLPGVGPGRAQAIIAHFGSVHAALVATEQELAGVPGLGAKTAKKVHEVLH 213 >gi|157373515|ref|YP_001472115.1| ERCC4 domain-containing protein [Shewanella sediminis HAW-EB3] gi|157315889|gb|ABV34987.1| ERCC4 domain protein [Shewanella sediminis HAW-EB3] Length = 212 Score = 68.2 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 31/61 (50%) Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 KRRK L + +GP R LL+ F +V+ + +S + L +EGI ++ A KI Sbjct: 150 KRRKNRQLFILQSLPEVGPRLARRLLKHFDSVEAVITASTDELIKVEGIGQERARKIREM 209 Query: 607 F 607 Sbjct: 210 L 210 >gi|193084204|gb|ACF09868.1| ATP-dependent RNA helicase EIF-4A family [uncultured marine group II euryarchaeote KM3-136-D10] Length = 928 Score = 68.2 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 L+ + IGP + LL F ++++++++ L + GI A I Sbjct: 876 LESLPNIGPTTAKRLLDHFKSIEVLTQADEAELCQVTGIGPTSARAILEVLR 927 >gi|327401381|ref|YP_004342220.1| cyclic nucleotide-binding protein [Archaeoglobus veneficus SNP6] gi|327316889|gb|AEA47505.1| cyclic nucleotide-binding protein [Archaeoglobus veneficus SNP6] Length = 210 Score = 68.2 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 28/50 (56%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 L I GIG + + LL+ FG+V + ++ L +EGI +K A +IY Sbjct: 154 LTAIPGIGVEKAKRLLEKFGSVYRVVNATIPELMRVEGIGEKQAKRIYYF 203 >gi|329896419|ref|ZP_08271518.1| excinuclease ABC subunit C [gamma proteobacterium IMCC3088] gi|328921839|gb|EGG29210.1| excinuclease ABC subunit C [gamma proteobacterium IMCC3088] Length = 240 Score = 68.2 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 74/220 (33%), Gaps = 12/220 (5%) Query: 55 INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYIL--ITDKHKIPALYKHR 112 + I T E+ ALL+E+ +K +P FN LR K + + D + K R Sbjct: 4 VTRIECQTTADELSALLVESQAVKSEQPLFNRRLRK-KRALWTAELLADNEGY-CVVKPR 61 Query: 113 DSSTIQ--GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGP 170 ++ G +G FA+ ++ + + L + R + R C QIKRC G Sbjct: 62 KVEQVEQLGYCYGLFANQTQLKNWLRNHAAEHGLCLHRVGLDRGKGR-CFGRQIKRCDGA 120 Query: 171 CTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH 230 C GE S+E Y + + + + + + ++ + Sbjct: 121 CCGEQSAEAYNAALLDLFAQFQLVVWPYHQPLWVREWGDSSHSESKAPQGTAQGWHVFHY 180 Query: 231 I-----QNHNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQ 265 + + +++ I F + Sbjct: 181 WTYLGSFERPKAGLEADFDWDEVVDRDAYRILLSFLRNDR 220 >gi|78189408|ref|YP_379746.1| SMF protein [Chlorobium chlorochromatii CaD3] gi|78171607|gb|ABB28703.1| SMF protein [Chlorobium chlorochromatii CaD3] Length = 385 Score = 67.8 bits (164), Expect = 5e-09, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 30/57 (52%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 L ++ GIG R + LL +G + + ++ L I GI + +A ++YN FH + Sbjct: 9 LSQVPGIGAARIKALLTHWGNLSFLQHATIADLTHINGIGETLATELYNTFHNAAKN 65 >gi|284161344|ref|YP_003399967.1| DEAD/DEAH box helicase [Archaeoglobus profundus DSM 5631] gi|284011341|gb|ADB57294.1| DEAD/DEAH box helicase domain protein [Archaeoglobus profundus DSM 5631] Length = 736 Score = 67.4 bits (163), Expect = 6e-09, Method: Composition-based stats. Identities = 62/396 (15%), Positives = 123/396 (31%), Gaps = 32/396 (8%) Query: 217 SAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT 276 + ++ N D + + + GQ L+ Sbjct: 348 EKLKEIVSSQLKEKPESRIIVFTNFRDTAEVISRELQSMGVPAVRFVGQANRENDRGLRQ 407 Query: 277 DSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGE 336 + + + E L E + E + + K ++ E Sbjct: 408 REQVEIVERFRAGDIKVLVATSVGEEGLDIPEVDLVVFYEAIPSEIRSIQRKGRTGRKKE 467 Query: 337 KRKIIEQALINAHRSHTQK-LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSA 395 R ++ ++ L E + L+D F L K +E + ++ Sbjct: 468 GRIVVLVTKGTRDEAYFYISLRKERAMFERLRDLK--FMLKRTQKSLEEFKVGNLK-DVT 524 Query: 396 VGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK 455 V + VK Y K N+ + + + + + + + + Sbjct: 525 VYVDSREMRSEVVKKLYEKANVRVGNFNADYVVSDRVAIERKTADDFVDSIIDRRLFDQL 584 Query: 456 QEYSFPSWPDVVILDGGKGQL----SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF 511 E V+I++G +A +G L + V+ I +I K P+ +A +F Sbjct: 585 IELKKHYLKPVLIVEGDGIYRRLNPNAIRGALATVIVDFGIPVI-FTKSPEETA---EFI 640 Query: 512 VKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLD----EINGIGPLR 567 V L + + H + K ++ I+ IGP+ Sbjct: 641 VSLARREQLAKDREV----------------SPHYGKTKMTLKEQMEYVVSSISDIGPVI 684 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 R LL+ F T++ I+++S E L + + KK A KI Sbjct: 685 ARNLLEHFQTIENIAKASVEDLMKVPKVGKKTAEKI 720 >gi|228473001|ref|ZP_04057758.1| DNA polymerase III, epsilon subunit [Capnocytophaga gingivalis ATCC 33624] gi|228275583|gb|EEK14360.1| DNA polymerase III, epsilon subunit [Capnocytophaga gingivalis ATCC 33624] Length = 453 Score = 67.4 bits (163), Expect = 6e-09, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 85/189 (44%), Gaps = 4/189 (2%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 + +P G+Y + D G++LY+ K+ N++KR+ + R + Q+ + + + Sbjct: 189 LDGLPNQLGIYYLYDKKGKLLYMSKSKNIRKRVNEHFTGEGK--RDIFLQQQVGKVMYEL 246 Query: 63 TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122 T T++ A L + K + F + K+FP+ L++ K K L + T + Sbjct: 247 TGTDLIATLKQEEEHKHITVHF-KTKKKKKTFPFALVSHKDKRGYLCLSVELRTPKQEAL 305 Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182 F S + + + + L + + + RT C I +C+G C G+ + E Y + Sbjct: 306 AIFESQEEGLNLLFEMTERYELCTKLNGFSQARTY-CYNHSIGKCAGACMGDEAVEDYNQ 364 Query: 183 FVHEAKKFL 191 VH+A + Sbjct: 365 RVHQALEHY 373 >gi|167750769|ref|ZP_02422896.1| hypothetical protein EUBSIR_01747 [Eubacterium siraeum DSM 15702] gi|167656204|gb|EDS00334.1| hypothetical protein EUBSIR_01747 [Eubacterium siraeum DSM 15702] Length = 660 Score = 67.4 bits (163), Expect = 6e-09, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 31/51 (60%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I GIG +LL++ FG+++ +S +SPE ++++E +A I+ H+ Sbjct: 509 GIKGIGQKNAQLLMKHFGSIEKLSETSPEEISAVENFGDILANNIFTALHE 559 >gi|218289368|ref|ZP_03493602.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius LAA1] gi|218240474|gb|EED07655.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius LAA1] Length = 684 Score = 67.4 bits (163), Expect = 7e-09, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 55/149 (36%), Gaps = 19/149 (12%) Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMR 523 PD L ++ + + + + + +G R + + ++K + + L+ Sbjct: 434 PDCPALLREGLIHFCSRDAMNIEGLGEQWITVLLDRGLVR-THADLYRLRKSDLIQLDRM 492 Query: 524 DPIL--YFIQRLRDEAHRFAITTHRKRRKKAAYSPLD---EINGIGPLRKRLLLQSFGTV 578 L + +++ K+ + L I +G + L + FGT+ Sbjct: 493 GDKLADKLLHNIQE-------------SKRNSLERLLFGLGIRHVGEKAAKTLAEHFGTI 539 Query: 579 KMISRSSPETLASIEGISKKIACKIYNHF 607 + +S E L ++ I K+A I +F Sbjct: 540 DALMSASEEELMAVPDIGPKVAQSIRQYF 568 >gi|269792727|ref|YP_003317631.1| DNA ligase, NAD-dependent [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100362|gb|ACZ19349.1| DNA ligase, NAD-dependent [Thermanaerovibrio acidaminovorans DSM 6589] Length = 673 Score = 67.4 bits (163), Expect = 7e-09, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 29/54 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I G+G + L FG ++ + +S E LAS+EG+ +A + + F +++ Sbjct: 511 GIPGVGERTAQDLADRFGRLEALMDASEEELASVEGVGPVVARSVRDFFRNDST 564 >gi|222099565|ref|YP_002534133.1| DNA ligase [Thermotoga neapolitana DSM 4359] gi|254781438|sp|B9K734|DNLJ_THENN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|221571955|gb|ACM22767.1| DNA ligase [Thermotoga neapolitana DSM 4359] Length = 693 Score = 67.1 bits (162), Expect = 8e-09, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 27/51 (52%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G ++L + F +++ I+ +S ETL I GI +IA I +F Sbjct: 523 GIPMVGQKTAKILAEHFKSLEAIAEASYETLKDIPGIGPEIARSIVEYFRN 573 >gi|148269959|ref|YP_001244419.1| DNA ligase, NAD-dependent [Thermotoga petrophila RKU-1] gi|170288644|ref|YP_001738882.1| DNA ligase, NAD-dependent [Thermotoga sp. RQ2] gi|190359298|sp|A5IKX0|DNLJ_THEP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781442|sp|B1LA51|DNLJ_THESQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|147735503|gb|ABQ46843.1| DNA ligase, NAD-dependent [Thermotoga petrophila RKU-1] gi|170176147|gb|ACB09199.1| DNA ligase, NAD-dependent [Thermotoga sp. RQ2] Length = 688 Score = 67.1 bits (162), Expect = 9e-09, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 27/51 (52%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G ++L + F +++ I+ +S ETL I GI +IA I +F Sbjct: 518 GIPMVGQKTAKILAEHFKSLEAIADASYETLKDIPGIGPEIAKSIVEYFRN 568 >gi|289677235|ref|ZP_06498125.1| excinuclease ABC subunit C [Pseudomonas syringae pv. syringae FF5] Length = 41 Score = 67.1 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 26/40 (65%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 LL+ FG ++ +SR+S + +A GISKK+A IY + H Sbjct: 2 LLKHFGGLQELSRASIDEIAKAPGISKKLAESIYANLHSE 41 >gi|281412160|ref|YP_003346239.1| DNA ligase, NAD-dependent [Thermotoga naphthophila RKU-10] gi|281373263|gb|ADA66825.1| DNA ligase, NAD-dependent [Thermotoga naphthophila RKU-10] Length = 688 Score = 67.1 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 27/51 (52%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G ++L + F +++ I+ +S ETL I GI +IA I +F Sbjct: 518 GIPMVGQKTAKILAEHFKSLEAIADASYETLKDIPGIGPEIAKSIVEYFRN 568 >gi|312137159|ref|YP_004004496.1| dead/deah box helicase domain protein [Methanothermus fervidus DSM 2088] gi|311224878|gb|ADP77734.1| DEAD/DEAH box helicase domain protein [Methanothermus fervidus DSM 2088] Length = 730 Score = 66.7 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Query: 548 RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 R+K Y ++ + IG + + LL+ FG+VK + +S + L +EGI +KIA I Sbjct: 666 LREKQLY-VIESLPHIGAVNAKKLLRKFGSVKNVINASEKELMKVEGIGEKIAKDIKE 722 >gi|15642875|ref|NP_227916.1| DNA ligase [Thermotoga maritima MSB8] gi|7674016|sp|Q9WXV5|DNLJ_THEMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|4980590|gb|AAD35194.1|AE001696_8 DNA ligase [Thermotoga maritima MSB8] Length = 688 Score = 66.7 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 27/51 (52%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G ++L + F +++ I+ +S ETL I GI +IA I +F Sbjct: 518 GIPMVGQKTAKILAEHFKSLEAIADASYETLKDIPGIGPEIAKSIVEYFRN 568 >gi|317051097|ref|YP_004112213.1| DNA ligase, NAD-dependent [Desulfurispirillum indicum S5] gi|316946181|gb|ADU65657.1| DNA ligase, NAD-dependent [Desulfurispirillum indicum S5] Length = 660 Score = 66.7 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 30/54 (55%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G +LL + FG+++ + ++S E L ++E + + +A IY+ + S Sbjct: 507 GIRHVGKKTAQLLARHFGSMERLMQASIEELTAVEEVGEIVARSIYSFLREPAS 560 >gi|117927902|ref|YP_872453.1| DNA ligase, NAD-dependent [Acidothermus cellulolyticus 11B] gi|166215382|sp|A0LSQ7|DNLJ_ACIC1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|117648365|gb|ABK52467.1| DNA ligase, NAD-dependent [Acidothermus cellulolyticus 11B] Length = 695 Score = 66.7 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 28/49 (57%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L + FG++ I +S + LA++EG+ + IA I + F Sbjct: 532 SIRHVGPTAARALAREFGSIDAIRNASVDELAAVEGVGRVIAESIRDWF 580 >gi|217077826|ref|YP_002335544.1| DNA ligase, NAD-dependent [Thermosipho africanus TCF52B] gi|254781437|sp|B7IDX6|DNLJ_THEAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|217037681|gb|ACJ76203.1| DNA ligase, NAD-dependent [Thermosipho africanus TCF52B] Length = 665 Score = 66.3 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 6/68 (8%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA +PL I +G ++L F ++K +S++S + L SIEGI ++A I Sbjct: 499 KAKNTPLYRVIIGLGIPLVGEKTAKILADKFKSIKALSQASYDELTSIEGIGPEVAKNII 558 Query: 605 NHFHKNTS 612 +F + Sbjct: 559 EYFKNEKT 566 >gi|307297347|ref|ZP_07577153.1| DNA ligase, NAD-dependent [Thermotogales bacterium mesG1.Ag.4.2] gi|306916607|gb|EFN46989.1| DNA ligase, NAD-dependent [Thermotogales bacterium mesG1.Ag.4.2] Length = 665 Score = 66.3 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 6/64 (9%) Query: 550 KKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 +K+ +PL I G+G + L FG+++ + + + L ++ GI +++A I Sbjct: 500 QKSRSNPLFKLITGLGIPGVGSKTSKDLANYFGSLRGLVSADEKELRNVSGIGEQLAKDI 559 Query: 604 YNHF 607 +F Sbjct: 560 KRYF 563 >gi|84488838|ref|YP_447070.1| Hef nuclease [Methanosphaera stadtmanae DSM 3091] gi|84372157|gb|ABC56427.1| predicted ERCC4-like helicase [Methanosphaera stadtmanae DSM 3091] Length = 752 Score = 65.9 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 27/48 (56%) Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 + + GIGP+ + LL+ F VK I +S L +EGI +K A I + Sbjct: 697 ESLPGIGPVSAKNLLRHFKNVKNIVNASKNELKDVEGIGEKTATNIID 744 >gi|288561345|ref|YP_003424831.1| Hef nuclease [Methanobrevibacter ruminantium M1] gi|288544055|gb|ADC47939.1| Hef nuclease [Methanobrevibacter ruminantium M1] Length = 842 Score = 65.9 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 29/50 (58%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 ++ + IGP+ + LL+ FG+VK + ++ + L ++GI KK A I Sbjct: 774 IIESLPNIGPVHAKNLLEHFGSVKAVLQADEKQLQEVDGIGKKTAKSIKE 823 >gi|330984243|gb|EGH82346.1| hypothetical protein PLA107_04349 [Pseudomonas syringae pv. lachrymans str. M301315] Length = 613 Score = 65.9 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 + GIG L FG++ + +S + + ++GI K A +I+ H Sbjct: 553 SLPGIGAGNATKLFSHFGSIHAVMTASAKEIMGVKGIGPKTAQRIHELIH 602 >gi|21227489|ref|NP_633411.1| Hef nuclease [Methanosarcina mazei Go1] gi|20905864|gb|AAM31083.1| ATP-dependent RNA helicase, EIF-4A family [Methanosarcina mazei Go1] Length = 864 Score = 65.9 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 25/49 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I+ IGP R LL FG+V+ + R+ E L ++ I K A +I Sbjct: 810 SISNIGPKAARNLLSYFGSVEAVMRADIEELKKVKQIGPKTAARIREVL 858 >gi|126179364|ref|YP_001047329.1| Hef nuclease [Methanoculleus marisnigri JR1] gi|125862158|gb|ABN57347.1| helicase domain protein [Methanoculleus marisnigri JR1] Length = 751 Score = 65.5 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 8/68 (11%) Query: 546 RKRR-KKAAYSP-------LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 RK KK+ S L +G RLLL+ FG++K I + PE LA++ GI + Sbjct: 677 RKVHPKKSYRSVREEQEYALAAFPNVGLKSARLLLEHFGSLKAIVDAEPEELAAVHGIGE 736 Query: 598 KIACKIYN 605 K A I++ Sbjct: 737 KTARAIWD 744 >gi|330508988|ref|YP_004385416.1| DEAD/DEAH box helicase domain-containing protein [Methanosaeta concilii GP-6] gi|328929796|gb|AEB69598.1| DEAD/DEAH box helicase domain protein [Methanosaeta concilii GP-6] Length = 762 Score = 65.5 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 26/46 (56%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 I +GP R LL+ FG+++ + +S E L ++ + KIA +I Sbjct: 709 IPSVGPSVARKLLRHFGSIEKVIAASKEELQEVDMVGPKIAERIRE 754 >gi|330959841|gb|EGH60101.1| putative DNA-binding protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 233 Score = 65.5 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 6/61 (9%) Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN------TSHTP 615 G GP+ R LL F +V ++ +S + L +++GI K A I+ H P Sbjct: 161 GCGPVAARKLLNHFRSVFRVNNASIDELCAVKGIGPKKAQAIFEGIHYELPEGMSADDQP 220 Query: 616 T 616 T Sbjct: 221 T 221 >gi|146344019|ref|YP_001201875.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25] gi|146187831|emb|CAM96160.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25] Length = 233 Score = 65.5 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 6/61 (9%) Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN------TSHTP 615 G GP+ R LL F +V ++ +S + L +++GI K A I+ H P Sbjct: 161 GCGPVAARKLLNHFRSVFRVNNASIDELCAVKGIGPKKAQAIFEGIHYELPEGVSADDQP 220 Query: 616 T 616 T Sbjct: 221 T 221 >gi|147905540|ref|NP_001088772.1| hypothetical protein LOC496036 [Xenopus laevis] gi|56269183|gb|AAH87430.1| LOC496036 protein [Xenopus laevis] Length = 217 Score = 65.5 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 9/67 (13%) Query: 549 RKKAAY----SPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 RKK+ S L +I G+G ++ LLQ F +++ +S +S L S+ G + IA Sbjct: 150 RKKSFQLPDASVLQTVQKIPGVGRVKALQLLQHFPSIQKLSNASVAQLESVLG--RAIAL 207 Query: 602 KIYNHFH 608 I++ FH Sbjct: 208 NIHSFFH 214 >gi|154248881|ref|YP_001409706.1| DNA ligase, NAD-dependent [Fervidobacterium nodosum Rt17-B1] gi|190359256|sp|A7HJG6|DNLJ_FERNB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|154152817|gb|ABS60049.1| DNA ligase, NAD-dependent [Fervidobacterium nodosum Rt17-B1] Length = 681 Score = 65.5 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 30/50 (60%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I G+G ++L + + +++ +S++ + L+ IEGI + IA I +F+ Sbjct: 511 GIPGVGEKIAKVLAKKYKSMEELSKADIKELSEIEGIGEDIAKNIVEYFN 560 >gi|221215451|ref|ZP_03588415.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD1] gi|221164635|gb|EED97117.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD1] Length = 691 Score = 65.5 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 6/71 (8%) Query: 550 KKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 KKA ++ L I +G + L + FG++ I ++ + L + + +A I Sbjct: 518 KKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMNATIDELLEVNDVGPIVAESI 577 Query: 604 YNHFHKNTSHT 614 + F + + T Sbjct: 578 HQFFAEEHNRT 588 >gi|325957866|ref|YP_004289332.1| helicase domain-containing protein [Methanobacterium sp. AL-21] gi|325329298|gb|ADZ08360.1| helicase domain protein [Methanobacterium sp. AL-21] Length = 769 Score = 65.5 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 27/46 (58%) Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 + + IGP+ R LL+ F TV+ + +S E L ++GI KIA I Sbjct: 700 ESLPNIGPVTARKLLEEFKTVRGVINASEEELKKVDGIGDKIAKNI 745 >gi|20095114|ref|NP_614961.1| Hef nuclease [Methanopyrus kandleri AV19] gi|19888409|gb|AAM02891.1| ERCC4-like helicase-nuclease [Methanopyrus kandleri AV19] Length = 741 Score = 65.1 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 26/48 (54%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I G+GP R LL FG++ + +SP L ++GI ++ A +I Sbjct: 692 IPGVGPELARRLLDEFGSIGDVVNASPSELKRVKGIGERKAREIRRFL 739 >gi|124027340|ref|YP_001012660.1| ERCC4-type nuclease [Hyperthermus butylicus DSM 5456] gi|123978034|gb|ABM80315.1| ERCC4-type nuclease [Hyperthermus butylicus DSM 5456] Length = 243 Score = 65.1 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 30/46 (65%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 +GP R LL+ FGT++ I+ +S + L S+ GI +K A +IY F+ Sbjct: 185 VGPTLARRLLERFGTLRRIANASVQELMSVRGIGEKRAREIYLIFN 230 >gi|209522379|ref|ZP_03270993.1| DNA ligase, NAD-dependent [Burkholderia sp. H160] gi|209497185|gb|EDZ97426.1| DNA ligase, NAD-dependent [Burkholderia sp. H160] Length = 688 Score = 65.1 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 6/70 (8%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA ++ L I +G + L + FG++ I +S E L + + +A I+ Sbjct: 517 KAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDASLEELLEVNDVGPVVAESIH 576 Query: 605 NHFHKNTSHT 614 F ++ + T Sbjct: 577 QFFAEDHNRT 586 >gi|269127766|ref|YP_003301136.1| DNA ligase, NAD-dependent [Thermomonospora curvata DSM 43183] gi|268312724|gb|ACY99098.1| DNA ligase, NAD-dependent [Thermomonospora curvata DSM 43183] Length = 722 Score = 65.1 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 29/52 (55%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +GP R L + FG++ I ++S E LA+++G+ IA I F ++ Sbjct: 557 SIRHVGPTAARALAREFGSIDAIMKASEEELAAVDGVGPAIAASIKRWFAED 608 >gi|163750735|ref|ZP_02157971.1| atp-dependent rna helicase, eif-4a family protein [Shewanella benthica KT99] gi|161329579|gb|EDQ00571.1| atp-dependent rna helicase, eif-4a family protein [Shewanella benthica KT99] Length = 212 Score = 65.1 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%) Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 KR+K L + +GP + LL F ++ I + L +EGI ++ A KI + Sbjct: 150 KRKKNRQLFILQSLPQVGPKLAKRLLSHFDNIEAIFTAPAAELRKVEGIGQEKAQKIRDV 209 Query: 607 F 607 Sbjct: 210 L 210 >gi|20088995|ref|NP_615070.1| Hef nuclease [Methanosarcina acetivorans C2A] gi|19913848|gb|AAM03550.1| helicase [Methanosarcina acetivorans C2A] Length = 821 Score = 64.7 bits (156), Expect = 4e-08, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 8/67 (11%) Query: 549 RKKAAYSPLDE--------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 K + S L E I+ IGP R LL FG+VK + ++ E L ++ I K A Sbjct: 749 HGKKSASTLSEQQEYLISSISNIGPKAARNLLLHFGSVKAVLQADTEELKKVKLIGPKTA 808 Query: 601 CKIYNHF 607 +I Sbjct: 809 ARIKEVL 815 >gi|116753548|ref|YP_842666.1| Hef nuclease [Methanosaeta thermophila PT] gi|116664999|gb|ABK14026.1| DEAD/DEAH box helicase domain protein [Methanosaeta thermophila PT] Length = 749 Score = 64.7 bits (156), Expect = 4e-08, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%) Query: 553 AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 S L G+GP R LL+ FG+V+ I +S L S++ + K A +I Sbjct: 692 LISAL---PGVGPSVARNLLRHFGSVERIMTASEGELMSVDKVGPKTAARIRE 741 >gi|148643247|ref|YP_001273760.1| Hef nuclease [Methanobrevibacter smithii ATCC 35061] gi|222445478|ref|ZP_03607993.1| hypothetical protein METSMIALI_01117 [Methanobrevibacter smithii DSM 2375] gi|261349960|ref|ZP_05975377.1| putative ATP-dependent RNA helicase [Methanobrevibacter smithii DSM 2374] gi|148552264|gb|ABQ87392.1| ERCC4-like helicase [Methanobrevibacter smithii ATCC 35061] gi|222435043|gb|EEE42208.1| hypothetical protein METSMIALI_01117 [Methanobrevibacter smithii DSM 2375] gi|288860743|gb|EFC93041.1| putative ATP-dependent RNA helicase [Methanobrevibacter smithii DSM 2374] Length = 772 Score = 64.7 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 7/65 (10%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI-------YNHFH 608 ++ + IGP+ + LL+ FGTV I +S L +EGI KK A I Y +F Sbjct: 704 IIESLPNIGPVNAKNLLEHFGTVANIINASESQLQEVEGIGKKTAANIRKVVDSKYLYFQ 763 Query: 609 KNTSH 613 Sbjct: 764 NEIKE 768 >gi|115931315|ref|XP_001181183.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 226 Score = 64.7 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 7/71 (9%) Query: 547 KRRKKAAYSPLDE----INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 KRR + + L I +G +R + LLQ FG++K IS++S E L+++ G S A Sbjct: 156 KRRPPSLDTSLLATVQLIPKLGSVRVKALLQKFGSIKNISQASQEELSAVVGASH--AKH 213 Query: 603 IYNHF-HKNTS 612 I + HK Sbjct: 214 IKSFLTHKTAP 224 >gi|115647907|ref|XP_798494.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratus] Length = 182 Score = 64.7 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 7/71 (9%) Query: 547 KRRKKAAYSPLDE----INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 KRR + + L I +G +R + LLQ FG++K IS++S E L+++ G S A Sbjct: 112 KRRPPSLDTSLLATVQLIPKLGSVRVKALLQKFGSIKNISQASQEELSAVVGASH--AKH 169 Query: 603 IYNHF-HKNTS 612 I + HK Sbjct: 170 IKSFLTHKTAP 180 >gi|315095035|gb|EFT67011.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL060PA1] Length = 740 Score = 64.4 bits (155), Expect = 5e-08, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG+V+ I +S E LA ++G+ + IA + F Sbjct: 579 SIRHVGPTAARALATHFGSVEAIREASVEELAGVDGVGEIIAESVKRWF 627 >gi|315083671|gb|EFT55647.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL027PA2] Length = 740 Score = 64.4 bits (155), Expect = 5e-08, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG+V+ I +S E LA ++G+ + IA + F Sbjct: 579 SIRHVGPTAARALATHFGSVEAIREASVEELAGVDGVGEIIAESVKRWF 627 >gi|314966144|gb|EFT10243.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL082PA2] Length = 740 Score = 64.4 bits (155), Expect = 5e-08, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG+V+ I +S E LA ++G+ + IA + F Sbjct: 579 SIRHVGPTAARALATHFGSVEAIREASVEELAGVDGVGEIIAESVKRWF 627 >gi|314957538|gb|EFT01641.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL002PA1] Length = 724 Score = 64.4 bits (155), Expect = 5e-08, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG+V+ I +S E LA ++G+ + IA + F Sbjct: 563 SIRHVGPTAARALATHFGSVEAIREASVEELAGVDGVGEIIAESVKRWF 611 >gi|314923733|gb|EFS87564.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL001PA1] gi|315104373|gb|EFT76349.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL050PA2] gi|327328187|gb|EGE69956.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL103PA1] Length = 740 Score = 64.4 bits (155), Expect = 5e-08, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG+V+ I +S E LA ++G+ + IA + F Sbjct: 579 SIRHVGPTAARALATHFGSVEAIREASVEELAGVDGVGEIIAESVKRWF 627 >gi|314919398|gb|EFS83229.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL050PA1] Length = 740 Score = 64.4 bits (155), Expect = 5e-08, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG+V+ I +S E LA ++G+ + IA + F Sbjct: 579 SIRHVGPTAARALATHFGSVEAIREASVEELAGVDGVGEIIAESVKRWF 627 >gi|313836700|gb|EFS74414.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL037PA2] gi|314929893|gb|EFS93724.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL044PA1] gi|314972321|gb|EFT16418.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL037PA3] gi|328907750|gb|EGG27514.1| NAD-dependent DNA ligase LigA [Propionibacterium sp. P08] Length = 740 Score = 64.4 bits (155), Expect = 5e-08, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG+V+ I +S E LA ++G+ + IA + F Sbjct: 579 SIRHVGPTAARALATHFGSVEAIREASVEELAGVDGVGEIIAESVKRWF 627 >gi|313834239|gb|EFS71953.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL056PA1] gi|314924752|gb|EFS88583.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL036PA3] Length = 740 Score = 64.4 bits (155), Expect = 5e-08, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG+V+ I +S E LA ++G+ + IA + F Sbjct: 579 SIRHVGPTAARALATHFGSVEAIREASVEELAGVDGVGEIIAESVKRWF 627 >gi|313822055|gb|EFS59769.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL036PA1] gi|313823710|gb|EFS61424.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL036PA2] Length = 740 Score = 64.4 bits (155), Expect = 5e-08, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG+V+ I +S E LA ++G+ + IA + F Sbjct: 579 SIRHVGPTAARALATHFGSVEAIREASVEELAGVDGVGEIIAESVKRWF 627 >gi|313793877|gb|EFS41901.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA1] Length = 740 Score = 64.4 bits (155), Expect = 5e-08, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG+V+ I +S E LA ++G+ + IA + F Sbjct: 579 SIRHVGPTAARALATHFGSVEAIREASVEELAGVDGVGEIIAESVKRWF 627 >gi|313763487|gb|EFS34851.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL013PA1] gi|313773641|gb|EFS39607.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL074PA1] gi|313801268|gb|EFS42519.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA2] gi|313808052|gb|EFS46533.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL087PA2] gi|313811476|gb|EFS49190.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL083PA1] gi|313813500|gb|EFS51214.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL025PA1] gi|313816668|gb|EFS54382.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL059PA1] gi|313819621|gb|EFS57335.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL046PA2] gi|313826033|gb|EFS63747.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL063PA1] gi|313829503|gb|EFS67217.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL063PA2] gi|313831217|gb|EFS68931.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL007PA1] gi|313840009|gb|EFS77723.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL086PA1] gi|314914784|gb|EFS78615.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA4] gi|314920694|gb|EFS84525.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL050PA3] gi|314930573|gb|EFS94404.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL067PA1] gi|314954471|gb|EFS98877.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL027PA1] gi|314961961|gb|EFT06062.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL002PA2] gi|314963768|gb|EFT07868.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL082PA1] gi|314968405|gb|EFT12503.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL037PA1] gi|314974093|gb|EFT18189.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL053PA1] gi|314976617|gb|EFT20712.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL045PA1] gi|314978931|gb|EFT23025.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL072PA2] gi|314984280|gb|EFT28372.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA1] gi|314986627|gb|EFT30719.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA2] gi|314990983|gb|EFT35074.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA3] gi|315079616|gb|EFT51609.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL053PA2] gi|315081153|gb|EFT53129.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL078PA1] gi|315087038|gb|EFT59014.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL002PA3] gi|315089213|gb|EFT61189.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL072PA1] gi|315095437|gb|EFT67413.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL038PA1] gi|315099114|gb|EFT71090.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL059PA2] gi|315100402|gb|EFT72378.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL046PA1] gi|315109094|gb|EFT81070.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL030PA2] gi|327328505|gb|EGE70267.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL096PA2] gi|327329632|gb|EGE71388.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL096PA3] gi|327334143|gb|EGE75857.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL097PA1] gi|327444292|gb|EGE90946.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL043PA2] gi|327444828|gb|EGE91482.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL043PA1] gi|327446317|gb|EGE92971.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL013PA2] gi|327452096|gb|EGE98750.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL092PA1] gi|327454866|gb|EGF01521.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL087PA3] gi|327457850|gb|EGF04505.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL083PA2] gi|328752459|gb|EGF66075.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL020PA1] gi|328755302|gb|EGF68918.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL087PA1] gi|328758217|gb|EGF71833.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL025PA2] gi|328759940|gb|EGF73524.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL099PA1] Length = 740 Score = 64.4 bits (155), Expect = 5e-08, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG+V+ I +S E LA ++G+ + IA + F Sbjct: 579 SIRHVGPTAARALATHFGSVEAIREASVEELAGVDGVGEIIAESVKRWF 627 >gi|289428790|ref|ZP_06430473.1| DNA ligase (NAD(+)) [Propionibacterium acnes J165] gi|289158188|gb|EFD06408.1| DNA ligase (NAD(+)) [Propionibacterium acnes J165] Length = 753 Score = 64.4 bits (155), Expect = 5e-08, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG+V+ I +S E LA ++G+ + IA + F Sbjct: 592 SIRHVGPTAARALATHFGSVEAIREASVEELAGVDGVGEIIAESVKRWF 640 >gi|282854737|ref|ZP_06264072.1| DNA ligase (NAD(+)) [Propionibacterium acnes J139] gi|282582319|gb|EFB87701.1| DNA ligase (NAD(+)) [Propionibacterium acnes J139] gi|314982008|gb|EFT26101.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA3] gi|315090823|gb|EFT62799.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA4] Length = 740 Score = 64.4 bits (155), Expect = 5e-08, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG+V+ I +S E LA ++G+ + IA + F Sbjct: 579 SIRHVGPTAARALATHFGSVEAIREASVEELAGVDGVGEIIAESVKRWF 627 >gi|289426325|ref|ZP_06428068.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK187] gi|295131143|ref|YP_003581806.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK137] gi|289153053|gb|EFD01771.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK187] gi|291375741|gb|ADD99595.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK137] gi|332676019|gb|AEE72835.1| DNA ligase [Propionibacterium acnes 266] Length = 753 Score = 64.4 bits (155), Expect = 5e-08, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG+V+ I +S E LA ++G+ + IA + F Sbjct: 592 SIRHVGPTAARALATHFGSVEAIREASVEELAGVDGVGEIIAESVKRWF 640 >gi|161621794|ref|YP_056321.2| NAD-dependent DNA ligase LigA [Propionibacterium acnes KPA171202] gi|315106904|gb|EFT78880.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL030PA1] Length = 740 Score = 64.4 bits (155), Expect = 5e-08, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG+V+ I +S E LA ++G+ + IA + F Sbjct: 579 SIRHVGPTAARALATHFGSVEAIREASVEELAGVDGVGEIIAESVKRWF 627 >gi|81611354|sp|Q6A7A2|DNLJ_PROAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|50840696|gb|AAT83363.1| DNA ligase [Propionibacterium acnes KPA171202] Length = 772 Score = 64.4 bits (155), Expect = 5e-08, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG+V+ I +S E LA ++G+ + IA + F Sbjct: 611 SIRHVGPTAARALATHFGSVEAIREASVEELAGVDGVGEIIAESVKRWF 659 >gi|156937851|ref|YP_001435647.1| ERCC4 domain-containing protein [Ignicoccus hospitalis KIN4/I] gi|156566835|gb|ABU82240.1| ERCC4 domain protein [Ignicoccus hospitalis KIN4/I] Length = 246 Score = 64.4 bits (155), Expect = 5e-08, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 24/47 (51%) Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 G+GP LL+ FG+V+ + +S L+ +EG+ A +I Sbjct: 178 PGVGPKLAEKLLERFGSVRAVFNASVAELSKVEGLGTNKAQEIVKVL 224 >gi|147920338|ref|YP_685889.1| Hef nuclease [uncultured methanogenic archaeon RC-I] gi|110621285|emb|CAJ36563.1| putative type III restriction-modification system, restriction subunit [uncultured methanogenic archaeon RC-I] Length = 792 Score = 64.4 bits (155), Expect = 5e-08, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 27/43 (62%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 +GP+ + LL+ FG+VK I+ +S E L ++E + K A +I Sbjct: 740 VGPVIAKNLLRHFGSVKKIAEASAEELTAVERVGPKTAARIRE 782 >gi|134296034|ref|YP_001119769.1| DNA ligase [Burkholderia vietnamiensis G4] gi|166215568|sp|A4JF81|DNLJ_BURVG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|134139191|gb|ABO54934.1| DNA ligase, NAD-dependent [Burkholderia vietnamiensis G4] Length = 691 Score = 64.4 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA ++ L I +G + L + FG++ I +S E L + + +A I+ Sbjct: 519 KAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLDPIMDASIEELLEVNDVGPIVAESIH 578 Query: 605 NHFHKNTSHT 614 F + + T Sbjct: 579 QFFAEEHNRT 588 >gi|255658313|ref|ZP_05403722.1| DNA ligase, NAD-dependent [Mitsuokella multacida DSM 20544] gi|260849632|gb|EEX69639.1| DNA ligase, NAD-dependent [Mitsuokella multacida DSM 20544] Length = 675 Score = 64.4 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 26/50 (52%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I GIG R L+ FG++ ++++S E + + + + A I +F+ Sbjct: 523 GIPGIGRTAARELMLHFGSIDALAKASEEEILEVRDMGEISAKAIVQYFN 572 >gi|298252820|ref|ZP_06976614.1| NAD-dependent DNA ligase, BRCT type II [Gardnerella vaginalis 5-1] gi|297533184|gb|EFH72068.1| NAD-dependent DNA ligase, BRCT type II [Gardnerella vaginalis 5-1] Length = 962 Score = 64.4 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 18/83 (21%) Query: 550 KKAAYSPLDEI--NG----------------IGPLRKRLLLQSFGTVKMISRSSPETLAS 591 + S L+EI G +GP RL+ +FG++ IS++S E L Sbjct: 757 SETTRSMLEEIAQKGKNAALWRVLVALSIRRLGPPTARLIAANFGSLDNISKASIEELTQ 816 Query: 592 IEGISKKIACKIYNHFHKNTSHT 614 I+G+ +IA +YN F + Sbjct: 817 IDGVGPEIAQAVYNWFQQAKDPA 839 >gi|297243530|ref|ZP_06927462.1| NAD-dependent DNA ligase, BRCT type II [Gardnerella vaginalis AMD] gi|296888575|gb|EFH27315.1| NAD-dependent DNA ligase, BRCT type II [Gardnerella vaginalis AMD] Length = 922 Score = 64.4 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 18/83 (21%) Query: 550 KKAAYSPLDEI--NG----------------IGPLRKRLLLQSFGTVKMISRSSPETLAS 591 + S L+EI G +GP RL+ +FG++ IS++S E L Sbjct: 717 SETTRSMLEEIAQKGKNAALWRVLVALSIRRLGPPTARLIAANFGSLDNISKASIEELTQ 776 Query: 592 IEGISKKIACKIYNHFHKNTSHT 614 I+G+ +IA +YN F + Sbjct: 777 IDGVGPEIAQAVYNWFQQAKDPA 799 >gi|283783245|ref|YP_003373999.1| DNA ligase (NAD(+)) [Gardnerella vaginalis 409-05] gi|283441754|gb|ADB14220.1| DNA ligase (NAD(+)) [Gardnerella vaginalis 409-05] Length = 962 Score = 64.4 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 18/83 (21%) Query: 550 KKAAYSPLDEI--NG----------------IGPLRKRLLLQSFGTVKMISRSSPETLAS 591 + S L+EI G +GP RL+ +FG++ IS++S E L Sbjct: 757 SETTRSMLEEIAQKGKNAALWRVLVALSIRRLGPPTARLIAANFGSLDNISKASIEELTQ 816 Query: 592 IEGISKKIACKIYNHFHKNTSHT 614 I+G+ +IA +YN F + Sbjct: 817 IDGVGPEIAQAVYNWFQQAKDPA 839 >gi|291519153|emb|CBK74374.1| DNA ligase, NAD-dependent [Butyrivibrio fibrisolvens 16/4] Length = 651 Score = 64.4 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 22/50 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I +G + LL F ++ I S E L + I + A IY++ H Sbjct: 499 GIPNVGKAAAKALLGQFKDIEKIMELSEEELMQVNDIGEISAKSIYDYLH 548 >gi|325529285|gb|EGD06234.1| NAD-dependent DNA ligase [Burkholderia sp. TJI49] Length = 691 Score = 64.4 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 19/93 (20%) Query: 536 EAHRFAITTHRKRRKKAAYSPLDE--------------INGIGPLRKRLLLQSFGTVKMI 581 E RFA ++ + L++ I +G + L + FG++ I Sbjct: 501 ELDRFA-----EKSAQNLLDSLEKAKHTTRARFIYGLGIRHVGESTAKDLAKHFGSLDPI 555 Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +S + L + + +A I+ F + + T Sbjct: 556 MNASIDELLEVNDVGPIVAESIHQFFAEEHNRT 588 >gi|149279365|ref|ZP_01885496.1| putative DNA processing Smf-like protein [Pedobacter sp. BAL39] gi|149229891|gb|EDM35279.1| putative DNA processing Smf-like protein [Pedobacter sp. BAL39] Length = 365 Score = 64.4 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 23/49 (46%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 L I +G + + LL FG+ + I +S E L + G+ A +I Sbjct: 8 ALTLIKNVGHVTAKALLSHFGSPERIFEASREELMEVPGVGMLTAREIL 56 >gi|332158155|ref|YP_004423434.1| Hef nuclease [Pyrococcus sp. NA2] gi|331033618|gb|AEC51430.1| Hef nuclease [Pyrococcus sp. NA2] Length = 749 Score = 64.4 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 29/109 (26%) Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556 +AK + E +AL L+ R QR+ Sbjct: 660 MAKREQEERKKEVRIRGDKKALTLSER-------QRM----------------------I 690 Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 ++ + + + LL+ FG+V+ + +S L +EGI +KIA +I Sbjct: 691 VESLPHVSATLAKRLLKHFGSVEKVFTASVPELMKVEGIGEKIAREIRR 739 >gi|289810714|ref|ZP_06541343.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 41 Score = 64.0 bits (154), Expect = 7e-08, Method: Composition-based stats. Identities = 18/40 (45%), Positives = 23/40 (57%) Query: 51 MISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRD 90 M+ Q I + T E+ ALLLEA +IK +P FN LR Sbjct: 1 MLRQARRISWICTAGEMGALLLEARLIKEQQPLFNKRLRR 40 >gi|88602972|ref|YP_503150.1| Hef nuclease [Methanospirillum hungatei JF-1] gi|88188434|gb|ABD41431.1| helicase-like protein [Methanospirillum hungatei JF-1] Length = 750 Score = 64.0 bits (154), Expect = 7e-08, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 23/45 (51%) Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 +GP R LL +FG++K I + E L + GI K A IY Sbjct: 699 PDLGPKYARALLTAFGSLKAIIDAEKEELLQVPGIGAKKAEMIYE 743 >gi|116490507|ref|YP_810051.1| NAD-dependent DNA ligase [Oenococcus oeni PSU-1] gi|122277306|sp|Q04GN6|DNLJ_OENOB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116091232|gb|ABJ56386.1| NAD-dependent DNA ligase [Oenococcus oeni PSU-1] Length = 684 Score = 64.0 bits (154), Expect = 8e-08, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 AI R+ + + L I G+G ++L F ++ + + E +A I+G+ + +A Sbjct: 511 AIDRSRQNSVERLITAL-GIRGVGAKAAKVLAAHFKNLRNLQNAGAEEIAEIDGVGQVMA 569 Query: 601 CKIYNHFHKNT 611 I +F+ + Sbjct: 570 DAIRQYFNSES 580 >gi|118587526|ref|ZP_01544950.1| DNA ligase, NAD-dependent [Oenococcus oeni ATCC BAA-1163] gi|118431977|gb|EAV38719.1| DNA ligase, NAD-dependent [Oenococcus oeni ATCC BAA-1163] Length = 684 Score = 64.0 bits (154), Expect = 8e-08, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 AI R+ + + L I G+G ++L F ++ + + E +A I+G+ + +A Sbjct: 511 AIDRSRQNSVERLITAL-GIRGVGAKAAKVLAAHFKNLRNLQNAGAEEIAEIDGVGQVMA 569 Query: 601 CKIYNHFHKNT 611 I +F+ + Sbjct: 570 DAIRQYFNSES 580 >gi|290889907|ref|ZP_06552994.1| hypothetical protein AWRIB429_0384 [Oenococcus oeni AWRIB429] gi|290480517|gb|EFD89154.1| hypothetical protein AWRIB429_0384 [Oenococcus oeni AWRIB429] Length = 684 Score = 64.0 bits (154), Expect = 8e-08, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 AI R+ + + L I G+G ++L F ++ + + E +A I+G+ + +A Sbjct: 511 AIDRSRQNSVERLITAL-GIRGVGAKAAKVLAAHFKNLRNLQNAGAEEIAEIDGVGQVMA 569 Query: 601 CKIYNHFHKNT 611 I +F+ + Sbjct: 570 DAIRQYFNSES 580 >gi|186476101|ref|YP_001857571.1| DNA ligase, NAD-dependent [Burkholderia phymatum STM815] gi|254781277|sp|B2JID1|DNLJ_BURP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|184192560|gb|ACC70525.1| DNA ligase, NAD-dependent [Burkholderia phymatum STM815] Length = 683 Score = 63.6 bits (153), Expect = 9e-08, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA ++ L I +G + L + FG++ I ++ E L + + +A I+ Sbjct: 511 KAKHTTLARFIYALGIRHVGESTAKDLARHFGSLDPIMSATVEELLEVNDVGPIVAEAIH 570 Query: 605 NHFHKNTSHT 614 F + + T Sbjct: 571 QFFAEEHNRT 580 >gi|187776813|ref|ZP_02993286.1| hypothetical protein CLOSPO_00329 [Clostridium sporogenes ATCC 15579] gi|187775472|gb|EDU39274.1| hypothetical protein CLOSPO_00329 [Clostridium sporogenes ATCC 15579] Length = 664 Score = 63.6 bits (153), Expect = 9e-08, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 23/52 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +G L+ F T++ I ++ E L + + + +A +Y+ F Sbjct: 513 GIPNVGKKTANDLVMKFKTLENIESATIEELVEVPDVGEIVAKSVYDFFKDE 564 >gi|327401630|ref|YP_004342469.1| helicase domain-containing protein [Archaeoglobus veneficus SNP6] gi|327317138|gb|AEA47754.1| helicase domain protein [Archaeoglobus veneficus SNP6] Length = 746 Score = 63.6 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 27/46 (58%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 I+ IGP+ R LL+ F T++ I+ +S E L + I KK A KI Sbjct: 687 ISDIGPVIARNLLEHFQTIERIATASEEELMKVPKIGKKTAEKIRK 732 >gi|282162816|ref|YP_003355201.1| putative ATP-dependent helicase [Methanocella paludicola SANAE] gi|282155130|dbj|BAI60218.1| putative ATP-dependent helicase [Methanocella paludicola SANAE] Length = 765 Score = 63.6 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 26/43 (60%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 +GP+ + LL+ FG+VK I +S E L ++ + +K A KI Sbjct: 713 VGPVISKNLLRHFGSVKNIVSASKEELMEVDKVGEKTAAKIRE 755 >gi|221198328|ref|ZP_03571374.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2M] gi|221208267|ref|ZP_03581271.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2] gi|221171915|gb|EEE04358.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2] gi|221182260|gb|EEE14661.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2M] Length = 691 Score = 63.6 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA ++ L I +G + L + FG++ I ++ + L + + +A I+ Sbjct: 519 KAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMNATIDELLEVNDVGPIVAESIH 578 Query: 605 NHFHKNTSHT 614 F + + T Sbjct: 579 QFFAEEHNRT 588 >gi|161524425|ref|YP_001579437.1| DNA ligase, NAD-dependent [Burkholderia multivorans ATCC 17616] gi|189350820|ref|YP_001946448.1| NAD-dependent DNA ligase [Burkholderia multivorans ATCC 17616] gi|254781276|sp|A9AIK9|DNLJ_BURM1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|160341854|gb|ABX14940.1| DNA ligase, NAD-dependent [Burkholderia multivorans ATCC 17616] gi|189334842|dbj|BAG43912.1| NAD-dependent DNA ligase [Burkholderia multivorans ATCC 17616] Length = 691 Score = 63.6 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA ++ L I +G + L + FG++ I ++ + L + + +A I+ Sbjct: 519 KAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMNATIDELLEVNDVGPIVAESIH 578 Query: 605 NHFHKNTSHT 614 F + + T Sbjct: 579 QFFAEEHNRT 588 >gi|150388066|ref|YP_001318115.1| DNA protecting protein DprA [Alkaliphilus metalliredigens QYMF] gi|149947928|gb|ABR46456.1| DNA protecting protein DprA [Alkaliphilus metalliredigens QYMF] Length = 378 Score = 63.6 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 27/47 (57%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 L E+ GIGP+ ++ LL + K I +S E L ++ GI +A +I Sbjct: 7 LSEVKGIGPVMQKRLLAYLQSPKAIYTASSEELMNVPGIGCHLAEEI 53 >gi|312131728|ref|YP_003999068.1| DNA ligase, nad-dependent [Leadbetterella byssophila DSM 17132] gi|311908274|gb|ADQ18715.1| DNA ligase, NAD-dependent [Leadbetterella byssophila DSM 17132] Length = 680 Score = 63.2 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 21/87 (24%) Query: 542 ITTHRKRRKKAAYSPLDEIN--------------GI---GPLRKRLLLQSFGTVKMISRS 584 I+ ++K + L+ I GI G + L F +++ + + Sbjct: 496 ISF----KEKTVKNILEGIAKSKEEPLAKLLFGIGIRFVGETTAQKLAAHFKSMQGLMNA 551 Query: 585 SPETLASIEGISKKIACKIYNHFHKNT 611 + E L ++ + +K+A I ++F + Sbjct: 552 NYEELLAVPDVGEKVAQSIRDYFQSES 578 >gi|302348186|ref|YP_003815824.1| Repair endonuclease XPF [Acidilobus saccharovorans 345-15] gi|302328598|gb|ADL18793.1| Repair endonuclease XPF [Acidilobus saccharovorans 345-15] Length = 252 Score = 63.2 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 25/51 (49%) Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 + GIG +L+ FG+++ +S LAS+EG+ + A +I Sbjct: 172 ESFPGIGAKTAERILEKFGSLESFFNASLAELASVEGVGESKAARIKELLK 222 >gi|255281707|ref|ZP_05346262.1| DNA ligase, NAD-dependent [Bryantella formatexigens DSM 14469] gi|255267774|gb|EET60979.1| DNA ligase, NAD-dependent [Bryantella formatexigens DSM 14469] Length = 674 Score = 63.2 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 28/54 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I G+G R L+ FGT++ ++ +S E L S+ I A I ++F + + Sbjct: 518 GIQGVGKATARSLMSHFGTIEKLAGASQEELESVSDIGSISAEAIRSYFAEPDN 571 >gi|255310946|ref|ZP_05353516.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 6276] gi|255317247|ref|ZP_05358493.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 6276s] gi|296435662|gb|ADH17836.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis G/9768] gi|296436585|gb|ADH18755.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis G/11222] gi|296437522|gb|ADH19683.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis G/11074] gi|297140021|gb|ADH96779.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis G/9301] Length = 663 Score = 63.2 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 550 KKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 KK L I +G L FGT+ + +S + L SIEGI K+A I Sbjct: 496 KKVTLDRLLTALSIPFVGSSGAIALADHFGTLDKVIEASLDELMSIEGIGPKVAASIVAF 555 Query: 607 F--HKNTSH 613 F H+N Sbjct: 556 FSKHENREE 564 >gi|237802575|ref|YP_002887769.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis B/Jali20/OT] gi|231273809|emb|CAX10593.1| NAD-dependent DNA ligase [Chlamydia trachomatis B/Jali20/OT] Length = 663 Score = 63.2 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 550 KKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 KK L I +G L FGT+ + +S + L SIEGI K+A I Sbjct: 496 KKVTLDRLLTALSIPFVGSSGAIALADHFGTLDKVIEASLDELMSIEGIGPKVAASIVAF 555 Query: 607 F--HKNTSH 613 F H+N Sbjct: 556 FSKHENREE 564 >gi|269123713|ref|YP_003306290.1| DNA ligase, NAD-dependent [Streptobacillus moniliformis DSM 12112] gi|268315039|gb|ACZ01413.1| DNA ligase, NAD-dependent [Streptobacillus moniliformis DSM 12112] Length = 675 Score = 63.2 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 32/54 (59%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G +L++ FG+++ I +S E L IEGI +K++ IYN+F N + Sbjct: 519 GIEYVGKTTSKLVVSHFGSIENIINASLEELVLIEGIGEKVSLSIYNYFKDNEN 572 >gi|291530728|emb|CBK96313.1| DNA ligase, NAD-dependent [Eubacterium siraeum 70/3] Length = 660 Score = 63.2 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 31/51 (60%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I GIG +LL+++FG+++ +S +S E ++++E +A I+ H+ Sbjct: 509 GIKGIGQKNAQLLMKNFGSIEKLSETSSEEISAVENFGDILANNIFTALHE 559 >gi|308235729|ref|ZP_07666466.1| DNA ligase (NAD(+)) [Gardnerella vaginalis ATCC 14018] gi|311114720|ref|YP_003985941.1| NAD-dependent DNA ligase LigA [Gardnerella vaginalis ATCC 14019] gi|310946214|gb|ADP38918.1| NAD-dependent DNA ligase LigA [Gardnerella vaginalis ATCC 14019] Length = 960 Score = 62.8 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 32/52 (61%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +GP RL+ FG+++ IS++S E L I+G+ +IA +Y+ F K+ + Sbjct: 786 LGPPTARLIAARFGSIENISKASVEDLTQIDGVGPEIAQAVYDWFEKSKNPQ 837 >gi|300856841|ref|YP_003781825.1| DNA ligase [Clostridium ljungdahlii DSM 13528] gi|300436956|gb|ADK16723.1| DNA ligase [Clostridium ljungdahlii DSM 13528] Length = 664 Score = 62.8 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 AI +K + + L I+ +G + L++ F ++ + + + + + I A Sbjct: 496 AIENSKKNEPQRLLASL-GISNVGKSTAKELMKYFKSIDNLINADIDEIKKVSDIGDISA 554 Query: 601 CKIYNHFHKNTS 612 I+ +F + Sbjct: 555 SAIFEYFKNEDN 566 >gi|294673321|ref|YP_003573937.1| DNA ligase (NAD(+)) [Prevotella ruminicola 23] gi|294473291|gb|ADE82680.1| DNA ligase (NAD(+)) [Prevotella ruminicola 23] Length = 674 Score = 62.8 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G +LL + F + + + E L IEGI + +A I +FH + Sbjct: 524 VGETSAKLLARHFKNIDALMNAGIEELQEIEGIGEVMAKSIITYFHTEEN 573 >gi|196047608|ref|ZP_03114816.1| putative excinuclease ABC subunit [Bacillus cereus 03BB108] gi|196021579|gb|EDX60278.1| putative excinuclease ABC subunit [Bacillus cereus 03BB108] Length = 225 Score = 62.8 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 23/88 (26%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 + GVY + D R++YVGKA +L+ RI+ + + + +T Q+ ++ F Sbjct: 19 KQSGVYLIRDKGNRIVYVGKAVDLKSRIRDHFNGHTNT--------QVYSVFFYEV---- 66 Query: 68 EALLLEANMIK----------RLKPRFN 85 A+++E + IK KP FN Sbjct: 67 -AVIIENSSIKRSMIETNLMFEYKPVFN 93 >gi|206560458|ref|YP_002231222.1| DNA ligase [Burkholderia cenocepacia J2315] gi|254781275|sp|B4ECN6|DNLJ_BURCJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|198036499|emb|CAR52396.1| DNA ligase [Burkholderia cenocepacia J2315] Length = 691 Score = 62.8 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA ++ L I +G + L + FG++ I +S E L + + +A I+ Sbjct: 519 KAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDASIEELLEVNDVGPIVAESIH 578 Query: 605 NHFHKNTSHT 614 F + + T Sbjct: 579 QFFAEEHNRT 588 >gi|171322051|ref|ZP_02910925.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MEX-5] gi|171092642|gb|EDT37943.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MEX-5] Length = 691 Score = 62.8 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA ++ L I +G + L + FG++ I +S E L + + +A I+ Sbjct: 519 KAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDASIEELLEVNDVGPIVAESIH 578 Query: 605 NHFHKNTSHT 614 F + + T Sbjct: 579 QFFAEEHNRT 588 >gi|170703080|ref|ZP_02893902.1| DNA ligase, NAD-dependent [Burkholderia ambifaria IOP40-10] gi|170132009|gb|EDT00515.1| DNA ligase, NAD-dependent [Burkholderia ambifaria IOP40-10] Length = 691 Score = 62.8 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA ++ L I +G + L + FG++ I +S E L + + +A I+ Sbjct: 519 KAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDASIEELLEVNDVGPIVAESIH 578 Query: 605 NHFHKNTSHT 614 F + + T Sbjct: 579 QFFAEEHNRT 588 >gi|172060972|ref|YP_001808624.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MC40-6] gi|254781273|sp|B1YSH2|DNLJ_BURA4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|171993489|gb|ACB64408.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MC40-6] Length = 691 Score = 62.8 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA ++ L I +G + L + FG++ I +S E L + + +A I+ Sbjct: 519 KAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDASIEELLEVNDVGPIVAESIH 578 Query: 605 NHFHKNTSHT 614 F + + T Sbjct: 579 QFFAEEHNRT 588 >gi|254247879|ref|ZP_04941200.1| NAD-dependent DNA ligase [Burkholderia cenocepacia PC184] gi|124872655|gb|EAY64371.1| NAD-dependent DNA ligase [Burkholderia cenocepacia PC184] Length = 691 Score = 62.8 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA ++ L I +G + L + FG++ I +S E L + + +A I+ Sbjct: 519 KAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDASIEELLEVNDVGPIVAESIH 578 Query: 605 NHFHKNTSHT 614 F + + T Sbjct: 579 QFFAEEHNRT 588 >gi|115352108|ref|YP_773947.1| DNA ligase [Burkholderia ambifaria AMMD] gi|122322835|sp|Q0BE10|DNLJ_BURCM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|115282096|gb|ABI87613.1| DNA ligase, NAD-dependent [Burkholderia ambifaria AMMD] Length = 691 Score = 62.8 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA ++ L I +G + L + FG++ I +S E L + + +A I+ Sbjct: 519 KAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDASIEELLEVNDVGPIVAESIH 578 Query: 605 NHFHKNTSHT 614 F + + T Sbjct: 579 QFFAEEHNRT 588 >gi|325681379|ref|ZP_08160905.1| DNA ligase (NAD+) [Ruminococcus albus 8] gi|324106869|gb|EGC01159.1| DNA ligase (NAD+) [Ruminococcus albus 8] Length = 665 Score = 62.8 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 6/66 (9%) Query: 551 KAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + LD I GIG +LL FG + I R++ +A IEG +A +Y Sbjct: 501 KSKSNSLDRLIFGLGIRGIGQASAKLLCAKFGGIDSIMRATAAEIAEIEGFGDIMADSVY 560 Query: 605 NHFHKN 610 + FH+ Sbjct: 561 SAFHEE 566 >gi|291557760|emb|CBL34877.1| DNA ligase, NAD-dependent [Eubacterium siraeum V10Sc8a] Length = 660 Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 30/51 (58%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I GIG +LL++ FG+++ +S + PE ++++E +A I+ H+ Sbjct: 509 GIKGIGQKNAQLLMKHFGSIEKLSETLPEEISAVENFGDILANNIFTALHE 559 >gi|170692136|ref|ZP_02883299.1| DNA ligase, NAD-dependent [Burkholderia graminis C4D1M] gi|170142566|gb|EDT10731.1| DNA ligase, NAD-dependent [Burkholderia graminis C4D1M] Length = 693 Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA ++ L I +G + L + FG++ I +S E L + + +A I+ Sbjct: 522 KARHTTLSRFIYALGIRHVGESTAKDLAKHFGSLDPIMEASVEALLEVNDVGPVVAESIH 581 Query: 605 NHFHKNTSHT 614 F + + T Sbjct: 582 QFFAEEHNRT 591 >gi|167586849|ref|ZP_02379237.1| DNA ligase, NAD-dependent [Burkholderia ubonensis Bu] Length = 691 Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA ++ L I +G + L + FG++ I ++ E L + + +A I+ Sbjct: 519 KAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLNPIMDATVEELLEVNDVGPIVAESIH 578 Query: 605 NHFHKNTSHT 614 F + + T Sbjct: 579 QFFAEEHNRT 588 >gi|296158912|ref|ZP_06841740.1| DNA ligase, NAD-dependent [Burkholderia sp. Ch1-1] gi|295890787|gb|EFG70577.1| DNA ligase, NAD-dependent [Burkholderia sp. Ch1-1] Length = 688 Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA ++ L I +G + L + FG++ I +S E L + + +A I+ Sbjct: 517 KAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMEASVEALLEVNDVGPVVAESIH 576 Query: 605 NHFHKNTSHT 614 F + + T Sbjct: 577 QFFAEEHNRT 586 >gi|323526494|ref|YP_004228647.1| NAD-dependent DNA ligase [Burkholderia sp. CCGE1001] gi|323383496|gb|ADX55587.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1001] Length = 688 Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA ++ L I +G + L + FG++ I +S E L + + +A I+ Sbjct: 517 KAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMEASVEALLEVNDVGPVVAESIH 576 Query: 605 NHFHKNTSHT 614 F + + T Sbjct: 577 QFFAEEHNRT 586 >gi|89898194|ref|YP_515304.1| NAD-dependent DNA ligase LigA [Chlamydophila felis Fe/C-56] gi|123735917|sp|Q254X9|DNLJ_CHLFF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|89331566|dbj|BAE81159.1| DNA ligase [Chlamydophila felis Fe/C-56] Length = 662 Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 10/70 (14%) Query: 551 KAAYSPLD------EIN--GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 KA +PL+ I GIG L Q F ++ + +S E L I+GI K+A Sbjct: 497 KAKSAPLERFIAALGIPYVGIGGA--NALAQHFLSLDAVMSASLEELKVIDGIGSKVAES 554 Query: 603 IYNHFHKNTS 612 I ++FH++ + Sbjct: 555 IVDYFHQSDN 564 >gi|161723110|ref|YP_288664.2| NAD-dependent DNA ligase LigA [Thermobifida fusca YX] Length = 731 Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP L + F ++ I+++S E L ++EGI IA I + F Sbjct: 561 SIRHVGPRAAEDLARHFRSLDAIAQASEEELEAVEGIGPTIARSIVDWF 609 >gi|123774771|sp|Q47SC6|DNLJ_THEFY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|71914739|gb|AAZ54641.1| NAD-dependent DNA ligase [Thermobifida fusca YX] Length = 745 Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP L + F ++ I+++S E L ++EGI IA I + F Sbjct: 575 SIRHVGPRAAEDLARHFRSLDAIAQASEEELEAVEGIGPTIARSIVDWF 623 >gi|167837047|ref|ZP_02463930.1| DNA ligase, NAD-dependent [Burkholderia thailandensis MSMB43] Length = 691 Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA ++ L I +G + L + FG++ + +S + L + + +A I+ Sbjct: 519 KAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPVMDASIDELLEVNDVGPIVAESIH 578 Query: 605 NHFHKNTSHT 614 F + + T Sbjct: 579 QFFAEEHNRT 588 >gi|76800822|ref|YP_325830.1| Hef nuclease [Natronomonas pharaonis DSM 2160] gi|76556687|emb|CAI48259.1| probable nuclease domain protein/ probable ATP-dependent helicase [Natronomonas pharaonis DSM 2160] Length = 845 Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 26/43 (60%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 +GP+ R LL+ FG+V+ + + E L +++G+ A +I + Sbjct: 793 VGPVTARALLEHFGSVEAVMSADEEALQAVDGVGDVTAERIRD 835 >gi|28211984|ref|NP_782928.1| NAD-dependent DNA ligase LigA [Clostridium tetani E88] gi|75541732|sp|Q891I0|DNLJ_CLOTE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|28204427|gb|AAO36865.1| NAD-dependent DNA ligase [Clostridium tetani E88] Length = 668 Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 3/64 (4%) Query: 550 KKAAYSPL---DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 KK S I +G R L++SF T+ I ++ E L S++ I + +A + Sbjct: 504 KKPKLSSFIYALSIPNVGVKTARDLVKSFKTLDNIKNATIEELTSVKDIGEIVANSVIEF 563 Query: 607 FHKN 610 F + Sbjct: 564 FKQE 567 >gi|84498237|ref|ZP_00997034.1| DNA ligase [Janibacter sp. HTCC2649] gi|84381737|gb|EAP97620.1| DNA ligase [Janibacter sp. HTCC2649] Length = 731 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +GP R L Q FG++ I ++ E L+ +EG+ IA + + F + + Sbjct: 565 SIRHVGPTAARALAQHFGSMDGIRAATVEELSGVEGVGGIIAESVRDWFDREGNE 619 >gi|297526642|ref|YP_003668666.1| ERCC4 domain protein [Staphylothermus hellenicus DSM 12710] gi|297255558|gb|ADI31767.1| ERCC4 domain protein [Staphylothermus hellenicus DSM 12710] Length = 234 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 29/46 (63%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 +GP R LL+ F T++ I+ +S + L +EGI +K A +IY F+ Sbjct: 182 VGPTLARKLLREFKTLRNIANASVKELMVVEGIGEKRANEIYLIFN 227 >gi|228904740|ref|ZP_04068794.1| DNA ligase [Bacillus thuringiensis IBL 4222] gi|228854754|gb|EEM99358.1| DNA ligase [Bacillus thuringiensis IBL 4222] Length = 656 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 24/49 (48%) Query: 564 GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 G LL+ + + I+ +S E L IE I +A I+++FH + Sbjct: 509 GKGTAERLLRYYNNIDDIANASVEDLMRIEDIGSAVAQSIFDYFHNERN 557 >gi|114051485|ref|NP_001039527.1| Fanconi anemia-associated protein of 24 kDa [Bos taurus] gi|122063385|sp|Q2KHY5|FAP24_BOVIN RecName: Full=Fanconi anemia-associated protein of 24 kDa gi|86438532|gb|AAI12838.1| Fanconi anemia-associated protein, 24 kDa [Bos taurus] gi|296477806|gb|DAA19921.1| fanconi anemia-associated protein of 24 kDa [Bos taurus] Length = 215 Score = 62.0 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 6/68 (8%) Query: 544 THRKRRKKAAYSPLD----EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 RK+R + L +I G+G ++ LLLQ F +++ +S +S L ++ G Sbjct: 146 FLRKKRALVSEPALLRSVQQIPGVGKVKAPLLLQRFPSIQQLSNASLRELEAVVG--PAA 203 Query: 600 ACKIYNHF 607 A +I+ F Sbjct: 204 AQRIHAFF 211 >gi|126668716|ref|ZP_01739666.1| ERCC4-like helicase-nuclease [Marinobacter sp. ELB17] gi|126626816|gb|EAZ97463.1| ERCC4-like helicase-nuclease [Marinobacter sp. ELB17] Length = 380 Score = 62.0 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 28/57 (49%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L+ I G+ LL+ FG++K I+ +S LA ++G+ K A +I + Sbjct: 322 NQKIHVLESIPGVSTHIAETLLERFGSIKAIAAASQGELARVKGVGLKRAREISDVL 378 >gi|269836970|ref|YP_003319198.1| DNA ligase, NAD-dependent [Sphaerobacter thermophilus DSM 20745] gi|269786233|gb|ACZ38376.1| DNA ligase, NAD-dependent [Sphaerobacter thermophilus DSM 20745] Length = 680 Score = 62.0 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%) Query: 554 YSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 S L I +G RLL Q F ++ I+ +S E L I G + +A +Y+ F + Sbjct: 511 LSRLLHALGIRHVGERNARLLAQHFNSMDRIAAASIEELQGIPGFGRVVAEAVYDFFRE 569 >gi|51893963|ref|YP_076654.1| NAD-dependent DNA ligase [Symbiobacterium thermophilum IAM 14863] gi|81388077|sp|Q67KI8|DNLJ_SYMTH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|51857652|dbj|BAD41810.1| NAD-dependent DNA ligase [Symbiobacterium thermophilum IAM 14863] Length = 673 Score = 62.0 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 27/49 (55%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G RLL FG+++ I ++ + L +I G+ KIA + N+F Sbjct: 519 GIRHVGERAARLLADHFGSMEAIEQAGLDELTAIPGLGPKIAESVKNYF 567 >gi|222480951|ref|YP_002567188.1| ERCC4 domain protein [Halorubrum lacusprofundi ATCC 49239] gi|222453853|gb|ACM58118.1| ERCC4 domain protein [Halorubrum lacusprofundi ATCC 49239] Length = 836 Score = 62.0 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%) Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 K R + + I IGP+ R LL+ FGTV+ + + + L ++G+ A +I Sbjct: 771 KTRAEQQEYVVSSIADIGPVTARTLLEHFGTVEAVMTAPEDDLLEVDGVGPVTAERIRE 829 >gi|167619582|ref|ZP_02388213.1| DNA ligase, NAD-dependent [Burkholderia thailandensis Bt4] Length = 691 Score = 62.0 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA ++ L I +G + L + FG++ I +S + L + + +A I+ Sbjct: 519 KAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDASIDELLEVNDVGPIVAESIH 578 Query: 605 NHFHKNTSHT 614 F + + T Sbjct: 579 QFFAEAHNRT 588 >gi|167581473|ref|ZP_02374347.1| DNA ligase, NAD-dependent [Burkholderia thailandensis TXDOH] Length = 691 Score = 62.0 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA ++ L I +G + L + FG++ I +S + L + + +A I+ Sbjct: 519 KAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDASIDELLEVNDVGPIVAESIH 578 Query: 605 NHFHKNTSHT 614 F + + T Sbjct: 579 QFFAEAHNRT 588 >gi|83720010|ref|YP_442546.1| DNA ligase, NAD-dependent [Burkholderia thailandensis E264] gi|257138755|ref|ZP_05587017.1| DNA ligase, NAD-dependent [Burkholderia thailandensis E264] gi|123753789|sp|Q2SX03|DNLJ_BURTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|83653835|gb|ABC37898.1| DNA ligase, NAD-dependent [Burkholderia thailandensis E264] Length = 691 Score = 62.0 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA ++ L I +G + L + FG++ I +S + L + + +A I+ Sbjct: 519 KAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDASIDELLEVNDVGPIVAESIH 578 Query: 605 NHFHKNTSHT 614 F + + T Sbjct: 579 QFFAEAHNRT 588 >gi|261337889|ref|ZP_05965773.1| DNA ligase, NAD-dependent [Bifidobacterium gallicum DSM 20093] gi|270277364|gb|EFA23218.1| DNA ligase, NAD-dependent [Bifidobacterium gallicum DSM 20093] Length = 906 Score = 62.0 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 19/84 (22%) Query: 550 KKAAYSPLDEING-----------------IGPLRKRLLLQSFGTVKMISRSSPETLASI 592 + S L+EI +GP RL+ Q FGT+ + +S + L S+ Sbjct: 708 SETTRSLLEEIEHAKHAELDRVLVALSIRHVGPPTARLIAQRFGTLDALMHASKDELESV 767 Query: 593 EGISKKIACKIYNHFHKNTSHTPT 616 GI ++A I + F + PT Sbjct: 768 PGIGSEVAQAILDWF--ADADDPT 789 >gi|78100875|pdb|1X2I|A Chain A, Crystal Structure Of Archaeal XpfMUS81 HOMOLOG, HEF FROM Pyrococcus Furiosus, Helix-Hairpin-Helix Domain gi|78100876|pdb|1X2I|B Chain B, Crystal Structure Of Archaeal XpfMUS81 HOMOLOG, HEF FROM Pyrococcus Furiosus, Helix-Hairpin-Helix Domain Length = 75 Score = 62.0 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 26/48 (54%) Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 + + + R LL+ FG+V+ + +S L +EGI +KIA +I Sbjct: 17 EGLPHVSATLARRLLKHFGSVERVFTASVAELMKVEGIGEKIAKEIRR 64 >gi|189499391|ref|YP_001958861.1| DNA protecting protein DprA [Chlorobium phaeobacteroides BS1] gi|189494832|gb|ACE03380.1| DNA protecting protein DprA [Chlorobium phaeobacteroides BS1] Length = 382 Score = 62.0 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 27/53 (50%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 L + G+GP R R L + FGT I + LA I GI +K+A I + F Sbjct: 18 VLSRVPGLGPARIRALKRQFGTSNAIFHADERALAVIPGIGRKLARTITDFFR 70 >gi|120611505|ref|YP_971183.1| DNA ligase [Acidovorax citrulli AAC00-1] gi|166215380|sp|A1TR21|DNLJ_ACIAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|120589969|gb|ABM33409.1| DNA ligase, NAD-dependent [Acidovorax citrulli AAC00-1] Length = 732 Score = 62.0 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 6/63 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ ++ L I +G + L + FG + I +S E L + + +A I+ Sbjct: 564 KSKHTTLPRFLFGLGIRHVGEATAKDLARHFGGLDAIMDASVEQLLEVNDVGPVVAEAIH 623 Query: 605 NHF 607 F Sbjct: 624 TFF 626 >gi|254252054|ref|ZP_04945372.1| NAD-dependent DNA ligase [Burkholderia dolosa AUO158] gi|124894663|gb|EAY68543.1| NAD-dependent DNA ligase [Burkholderia dolosa AUO158] Length = 691 Score = 62.0 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA ++ L I +G + L + FG++ I +S + L + + +A I+ Sbjct: 519 KAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDASIDELLEVNDVGPIVAESIH 578 Query: 605 NHFHKNTSHT 614 F + + T Sbjct: 579 QFFAEEHNRT 588 >gi|167622342|ref|YP_001672636.1| ERCC4 domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167352364|gb|ABZ74977.1| ERCC4 domain protein [Shewanella halifaxensis HAW-EB4] Length = 222 Score = 61.7 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 27/57 (47%) Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 KR K L + +GP + LL F +++ + + E L +EGI ++ A I Sbjct: 150 KRHKNRQLFILQSLPQVGPKLAKRLLIHFESIEAVFTAPEEELLKVEGIGQEKARGI 206 >gi|296233486|ref|XP_002762034.1| PREDICTED: fanconi anemia-associated protein of 24 kDa-like [Callithrix jacchus] Length = 215 Score = 61.7 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +I G+G ++ LLLQ F +++ +S +S L + G + +A +I+ F Sbjct: 165 QIPGVGKVKAPLLLQKFPSIQKLSNASIRELEQVVG--QAVAQQIHAFF 211 >gi|255348508|ref|ZP_05380515.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 70] gi|255503049|ref|ZP_05381439.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 70s] gi|255506721|ref|ZP_05382360.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis D(s)2923] gi|296434735|gb|ADH16913.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis E/150] gi|296438453|gb|ADH20606.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis E/11023] Length = 663 Score = 61.7 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 5/69 (7%) Query: 550 KKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 KK A L I +G L FGT+ + +S + L SIEGI K+A I Sbjct: 496 KKVALDRLLTALSIPFVGSSGAIALADHFGTLDKVIEASLDELMSIEGIGPKVAASIVAF 555 Query: 607 F--HKNTSH 613 F H+N Sbjct: 556 FSKHENREE 564 >gi|189219712|ref|YP_001940353.1| NAD-dependent DNA ligase [Methylacidiphilum infernorum V4] gi|254781365|sp|B3DWU2|DNLJ_METI4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|189186570|gb|ACD83755.1| NAD-dependent DNA ligase [Methylacidiphilum infernorum V4] Length = 689 Score = 61.7 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%) Query: 550 KKAAYSPL---DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 KK S L I IG L + FGT+ +S ++ E L ++ I + +A I N+ Sbjct: 525 KKKDLSRLIFGLGIPHIGQKASEDLARYFGTMDKLSHATEEELLNLPFIGEIMARSIVNY 584 Query: 607 FHKNTS 612 F K + Sbjct: 585 FRKEAN 590 >gi|15604865|ref|NP_219649.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis D/UW-3/CX] gi|7673995|sp|O84148|DNLJ_CHLTR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|3328547|gb|AAC67737.1| DNA Ligase [Chlamydia trachomatis D/UW-3/CX] gi|289525187|emb|CBJ14662.1| NAD-dependent DNA ligase [Chlamydia trachomatis Sweden2] gi|297748276|gb|ADI50822.1| NAD-dependent DNA ligase [Chlamydia trachomatis D-EC] gi|297749156|gb|ADI51834.1| NAD-dependent DNA ligase [Chlamydia trachomatis D-LC] Length = 663 Score = 61.7 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 5/69 (7%) Query: 550 KKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 KK A L I +G L FGT+ + +S + L SIEGI K+A I Sbjct: 496 KKVALDRLLTALSIPFVGSSGAIALADHFGTLDKVIEASLDELMSIEGIGPKVAASIVAF 555 Query: 607 F--HKNTSH 613 F H+N Sbjct: 556 FSKHENREE 564 >gi|18978387|ref|NP_579744.1| Hef nuclease [Pyrococcus furiosus DSM 3638] gi|18894225|gb|AAL82139.1| ATP-dependent RNA helicase, putative [Pyrococcus furiosus DSM 3638] Length = 764 Score = 61.7 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 26/48 (54%) Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 + + + R LL+ FG+V+ + +S L +EGI +KIA +I Sbjct: 706 EGLPHVSATLARRLLKHFGSVERVFTASVAELMKVEGIGEKIAKEIRR 753 >gi|260911472|ref|ZP_05918061.1| DNA ligase [Prevotella sp. oral taxon 472 str. F0295] gi|260634401|gb|EEX52502.1| DNA ligase [Prevotella sp. oral taxon 472 str. F0295] Length = 666 Score = 61.7 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 25/50 (50%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G +LL + F ++ + ++PE L +EG+ IA + FH + Sbjct: 515 VGETTAKLLAKHFKSIDALMTATPEQLVEVEGVGTVIAESVVRFFHDEVN 564 >gi|237804493|ref|YP_002888647.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis B/TZ1A828/OT] gi|231272793|emb|CAX09699.1| NAD-dependent DNA ligase [Chlamydia trachomatis B/TZ1A828/OT] Length = 663 Score = 61.7 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 5/69 (7%) Query: 550 KKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 KK A L I +G L FGT+ + +S + L SIEGI K+A I Sbjct: 496 KKVALDRLLTALSIPFVGSSGAIALADHFGTLDKVIEASLDELMSIEGIGPKVAASIVAF 555 Query: 607 F--HKNTSH 613 F H+N Sbjct: 556 FSKHENREE 564 >gi|330466191|ref|YP_004403934.1| DNA ligase [Verrucosispora maris AB-18-032] gi|328809162|gb|AEB43334.1| DNA ligase, NAD-dependent [Verrucosispora maris AB-18-032] Length = 717 Score = 61.7 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP + L + F +++ I +S E L+S++G+ IA I F Sbjct: 552 SIRHVGPTAAQALARHFRSIEAIDNASEEELSSVDGVGPTIAASIREWF 600 >gi|307729327|ref|YP_003906551.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1003] gi|307583862|gb|ADN57260.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1003] Length = 688 Score = 61.7 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA ++ L I +G + L + FG++ I +S E L + + +A I+ Sbjct: 517 KAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDASVEALLEVNDVGPVVAESIH 576 Query: 605 NHFHKNTSHT 614 F + + T Sbjct: 577 QFFAEEHNRT 586 >gi|187924439|ref|YP_001896081.1| DNA ligase, NAD-dependent [Burkholderia phytofirmans PsJN] gi|254781278|sp|B2T5K0|DNLJ_BURPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|187715633|gb|ACD16857.1| DNA ligase, NAD-dependent [Burkholderia phytofirmans PsJN] Length = 688 Score = 61.7 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA ++ L I +G + L + FG++ I +S E L + + +A I+ Sbjct: 517 KAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDASVEALLEVNDVGPVVAESIH 576 Query: 605 NHFHKNTSHT 614 F + + T Sbjct: 577 QFFAEEHNRT 586 >gi|91784125|ref|YP_559331.1| NAD-dependent DNA ligase [Burkholderia xenovorans LB400] gi|123358676|sp|Q13XB0|DNLJ_BURXL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|91688079|gb|ABE31279.1| NAD-dependent DNA ligase [Burkholderia xenovorans LB400] Length = 688 Score = 61.7 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA ++ L I +G + L + FG++ I +S E L + + +A I+ Sbjct: 517 KAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDASVEALLEVNDVGPVVAESIH 576 Query: 605 NHFHKNTSHT 614 F + + T Sbjct: 577 QFFAEEHNRT 586 >gi|161760708|ref|YP_062356.2| NAD-dependent DNA ligase LigA [Leifsonia xyli subsp. xyli str. CTCB07] Length = 755 Score = 61.7 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 15/96 (15%) Query: 514 KGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPL--DEINGIGPLRKRLL 571 G+ + + + + + L R R K + L I +GP+ R L Sbjct: 553 DGDEIAVPSKS-AIELLANL------------RAARTKPLWRILVSLNIRHVGPVAARAL 599 Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 FG++ I +S + LA+++G+ +A + + F Sbjct: 600 ADHFGSLDAIRAASRDELAAVDGVGGIVADAVLSWF 635 >gi|81390835|sp|Q6AEE5|DNLJ_LEIXX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|50951550|gb|AAT89251.1| DNA ligase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 747 Score = 61.7 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 15/96 (15%) Query: 514 KGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPL--DEINGIGPLRKRLL 571 G+ + + + + + L R R K + L I +GP+ R L Sbjct: 545 DGDEIAVPSKS-AIELLANL------------RAARTKPLWRILVSLNIRHVGPVAARAL 591 Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 FG++ I +S + LA+++G+ +A + + F Sbjct: 592 ADHFGSLDAIRAASRDELAAVDGVGGIVADAVLSWF 627 >gi|304411681|ref|ZP_07393293.1| ERCC4 domain protein [Shewanella baltica OS183] gi|307306267|ref|ZP_07586012.1| ERCC4 domain protein [Shewanella baltica BA175] gi|304349869|gb|EFM14275.1| ERCC4 domain protein [Shewanella baltica OS183] gi|306911140|gb|EFN41567.1| ERCC4 domain protein [Shewanella baltica BA175] Length = 212 Score = 61.7 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 27/61 (44%) Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 KR+K L + +GP LL F +V+ + +S E L + GI K A KI Sbjct: 150 KRKKNQQLFILQSLPEVGPKLANKLLCHFASVEAVVTASEEALMQVGGIGKNKASKIREV 209 Query: 607 F 607 Sbjct: 210 L 210 >gi|166154367|ref|YP_001654485.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 434/Bu] gi|166155242|ref|YP_001653497.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335620|ref|ZP_07223864.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis L2tet1] gi|254781287|sp|B0B9Q4|DNLJ_CHLT2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781289|sp|B0BBD3|DNLJ_CHLTB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|165930355|emb|CAP03841.1| NAD-dependent DNA ligase [Chlamydia trachomatis 434/Bu] gi|165931230|emb|CAP06795.1| NAD-dependent DNA ligase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 663 Score = 61.7 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 5/69 (7%) Query: 550 KKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 KK A L I +G L FGT+ + +S + L SIEGI K+A I Sbjct: 496 KKVALDRLLTALSIPFVGSSGAIALADHFGTLDKVIEASLDELMSIEGIGPKVAASIVAF 555 Query: 607 F--HKNTSH 613 F H+N Sbjct: 556 FSKHENREE 564 >gi|320160951|ref|YP_004174175.1| DNA ligase [Anaerolinea thermophila UNI-1] gi|319994804|dbj|BAJ63575.1| DNA ligase [Anaerolinea thermophila UNI-1] Length = 674 Score = 61.7 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 AI R R + L I G+G + L + F + +S+++ + L IEG+ IA Sbjct: 503 AIQNSRSRPLSRLITAL-GIRGVGEVMAGELAKHFKNLDALSKATVQQLMEIEGVGPNIA 561 Query: 601 CKIYNHF 607 I F Sbjct: 562 QSIVEWF 568 >gi|152998915|ref|YP_001364596.1| ERCC4 domain-containing protein [Shewanella baltica OS185] gi|160873501|ref|YP_001552817.1| ERCC4 domain-containing protein [Shewanella baltica OS195] gi|151363533|gb|ABS06533.1| ERCC4 domain protein [Shewanella baltica OS185] gi|160859023|gb|ABX47557.1| ERCC4 domain protein [Shewanella baltica OS195] gi|315265730|gb|ADT92583.1| ERCC4 domain protein [Shewanella baltica OS678] Length = 212 Score = 61.7 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 27/61 (44%) Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 KR+K L + +GP LL F +V+ + +S E L + GI K A KI Sbjct: 150 KRKKNQQLFILQSLPEVGPKLANKLLCHFASVEAVVTASEEALMQVGGIGKNKASKIREV 209 Query: 607 F 607 Sbjct: 210 L 210 >gi|295676829|ref|YP_003605353.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1002] gi|295436672|gb|ADG15842.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1002] Length = 687 Score = 61.7 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 6/70 (8%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA ++ L I +G + L + FG++ I +S E L + + +A I+ Sbjct: 517 KAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDASLEALLEVNDVGPVVAESIH 576 Query: 605 NHFHKNTSHT 614 F ++ + T Sbjct: 577 QFFAEDHNRT 586 >gi|154150356|ref|YP_001403974.1| Hef nuclease [Candidatus Methanoregula boonei 6A8] gi|153998908|gb|ABS55331.1| helicase domain protein [Methanoregula boonei 6A8] Length = 745 Score = 61.7 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 26/45 (57%) Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 IG RLLL FG+V+ I ++ E L +++GI +K KI+ Sbjct: 694 PDIGLKNARLLLAHFGSVQGIVNATLEELVAVKGIGEKTGGKIFE 738 >gi|296330120|ref|ZP_06872602.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673365|ref|YP_003865037.1| NAD-dependent DNA ligase [Bacillus subtilis subsp. spizizenii str. W23] gi|296152709|gb|EFG93576.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411609|gb|ADM36728.1| NAD-dependent DNA ligase [Bacillus subtilis subsp. spizizenii str. W23] Length = 668 Score = 61.7 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 6/68 (8%) Query: 550 KKAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 +K+ + L+ I IG + L F +++ + ++S E L +I+ I +K+A + Sbjct: 496 QKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKKASKEELLAIDEIGEKMADAV 555 Query: 604 YNHFHKNT 611 +FHK Sbjct: 556 ITYFHKEE 563 >gi|256832938|ref|YP_003161665.1| DNA ligase, NAD-dependent [Jonesia denitrificans DSM 20603] gi|256686469|gb|ACV09362.1| DNA ligase, NAD-dependent [Jonesia denitrificans DSM 20603] Length = 798 Score = 61.7 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 26/56 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +GP R L FG++ I +S LA+++G+ IA + F + + Sbjct: 623 SIRHVGPTAARALATEFGSMDRIRAASVSELAAVDGVGSTIAESVVEWFREVDGNQ 678 >gi|268317536|ref|YP_003291255.1| DNA protecting protein DprA [Rhodothermus marinus DSM 4252] gi|262335070|gb|ACY48867.1| DNA protecting protein DprA [Rhodothermus marinus DSM 4252] Length = 385 Score = 61.7 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 23/51 (45%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 L + G+GP R R LL FG+ + + L + GI + A +I Sbjct: 32 ALTLVPGVGPGRIRALLARFGSAQAALHAPVAALVQVPGIGLQTARRIAAF 82 >gi|14591755|ref|NP_143722.1| Hef nuclease [Pyrococcus horikoshii OT3] Length = 748 Score = 61.7 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 29/109 (26%) Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556 +AK + E + +AL L R QR+ Sbjct: 659 MAKREQEERKREVRIRGEKKALTLAER-------QRM----------------------I 689 Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 ++ + + R LL+ FG+V+ + +S L +EGI +KIA +I Sbjct: 690 VESLPNVSTTLARRLLRHFGSVEKVFTASVPELMKVEGIGEKIAREIRR 738 >gi|32474581|ref|NP_867575.1| excinuclease ABC subunit C [Rhodopirellula baltica SH 1] gi|32445120|emb|CAD75122.1| probable excinuclease ABC chain C [Rhodopirellula baltica SH 1] Length = 347 Score = 61.7 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 10/94 (10%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN--- 57 + + +P PGVY D G LY+G+A L+ RI ++ +++ + + N Sbjct: 252 LDLDSLPNTPGVYLFRDSTG-YLYIGEAIRLRDRIGDHLRGSHNAGLASILGDDATNPVT 310 Query: 58 IRFTVTCTEVEALLL------EANMIKRLKPRFN 85 + + A L E+ +I+ PRFN Sbjct: 311 LELHAFPNDSPAKKLTVRRAYESELIRSRHPRFN 344 >gi|228476991|ref|ZP_04061629.1| DNA ligase, NAD-dependent [Streptococcus salivarius SK126] gi|228251010|gb|EEK10181.1| DNA ligase, NAD-dependent [Streptococcus salivarius SK126] Length = 652 Score = 61.3 bits (147), Expect = 4e-07, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 32/55 (58%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G + LL++FG++K ++ + E +A+++G+ + IA I +F K + Sbjct: 502 GIRHVGAKVSKQLLEAFGSIKELASADVEAIAAVDGLGEVIAKSIQRYFAKEEAQ 556 >gi|238063192|ref|ZP_04607901.1| DNA ligase, NAD-dependent [Micromonospora sp. ATCC 39149] gi|237885003|gb|EEP73831.1| DNA ligase, NAD-dependent [Micromonospora sp. ATCC 39149] Length = 702 Score = 61.3 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP + L + F ++ I +S E L+S++G+ IA I + F Sbjct: 537 SIRHVGPTAAQALARHFRSMAAIQEASEEELSSVDGVGPTIAASIVDWF 585 >gi|124485977|ref|YP_001030593.1| Hef nuclease [Methanocorpusculum labreanum Z] gi|124363518|gb|ABN07326.1| DEAD/DEAH box helicase domain protein [Methanocorpusculum labreanum Z] Length = 763 Score = 61.3 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 4/65 (6%) Query: 545 HRKRRKKAAYSPLDEI----NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 H+ + ++ + ++ I IGP R LL+ FG+++ I +S E L ++G+ +K A Sbjct: 690 HKSKTGRSGKAAVEYILTAFPEIGPKAARDLLREFGSLRSILSASKEDLLRVKGVGEKTA 749 Query: 601 CKIYN 605 + Sbjct: 750 NAVLQ 754 >gi|289596778|ref|YP_003483474.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei T469] gi|289534565|gb|ADD08912.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei T469] Length = 756 Score = 61.3 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 29/54 (53%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 ++ + + + LL+ FG+VK + + L ++GI +K A +IY+ +K Sbjct: 694 IIESLPNVSAKLSQRLLEHFGSVKDVINAEVGELIQVKGIGRKTAEEIYDIVNK 747 >gi|304313782|ref|YP_003848929.1| helicase [Methanothermobacter marburgensis str. Marburg] gi|302587241|gb|ADL57616.1| predicted helicase [Methanothermobacter marburgensis str. Marburg] Length = 736 Score = 61.3 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 29/48 (60%) Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 + + IG R LL+SFG+V+ + +S + L +EGI K+IA +I Sbjct: 675 ESLPYIGSKYARRLLESFGSVEAVMNASEKELMEVEGIGKRIASEIRK 722 >gi|28572508|ref|NP_789288.1| DNA ligase [Tropheryma whipplei TW08/27] gi|81629879|sp|Q83HX4|DNLJ_TROW8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|28410640|emb|CAD67026.1| DNA ligase [Tropheryma whipplei TW08/27] Length = 628 Score = 61.3 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 6/64 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 +A SPL I IGP + L FG+++ I + + L + + + IA ++ Sbjct: 545 RAKRSPLWKFLLALNIRHIGPASAKALADHFGSIESIINAKIDELLKVRSLGETIAISVH 604 Query: 605 NHFH 608 + F Sbjct: 605 DWFR 608 >gi|167570377|ref|ZP_02363251.1| DNA ligase, NAD-dependent [Burkholderia oklahomensis C6786] Length = 691 Score = 61.3 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 19/93 (20%) Query: 536 EAHRFAITTHRKRRKKAAYSPLDE--------------INGIGPLRKRLLLQSFGTVKMI 581 E RFA ++ + LD+ I +G + L + FG++ I Sbjct: 501 ELDRFA-----EKSAQNLIDSLDKAKHTTLSRFIYALGIRHVGESTAKDLAKHFGSLDPI 555 Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +S E L + + +A I+ F + + T Sbjct: 556 MDASIEALLEVNDVGPIVAESIHQFFAEEHNRT 588 >gi|167563194|ref|ZP_02356110.1| DNA ligase, NAD-dependent [Burkholderia oklahomensis EO147] Length = 691 Score = 61.3 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 19/93 (20%) Query: 536 EAHRFAITTHRKRRKKAAYSPLDE--------------INGIGPLRKRLLLQSFGTVKMI 581 E RFA ++ + LD+ I +G + L + FG++ I Sbjct: 501 ELDRFA-----EKSAQNLIDSLDKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPI 555 Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +S E L + + +A I+ F + + T Sbjct: 556 MDASIEALLEVNDVGPIVAESIHQFFAEEHNRT 588 >gi|168186072|ref|ZP_02620707.1| DNA ligase, NAD-dependent [Clostridium botulinum C str. Eklund] gi|169295952|gb|EDS78085.1| DNA ligase, NAD-dependent [Clostridium botulinum C str. Eklund] Length = 664 Score = 61.3 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G L + F T+ + + E L S+E I +A + + F+ +T Sbjct: 513 GIPNVGKKTSTDLCKKFKTLDNLKEAKIEELVSVEDIGDIVAQSVLDFFNDDT 565 >gi|166216282|sp|Q83G99|DNLJ_TROWT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 628 Score = 61.3 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 6/64 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 +A SPL I IGP + L FG+++ I + + L + + + IA ++ Sbjct: 545 RAKRSPLWKFLLALNIRHIGPASAKALADHFGSIESIINAKIDELLKVRSLGETIAISVH 604 Query: 605 NHFH 608 + F Sbjct: 605 DWFR 608 >gi|327541270|gb|EGF27813.1| excinuclease ABC subunit C [Rhodopirellula baltica WH47] Length = 347 Score = 61.3 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 10/94 (10%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN--- 57 ++ + +P PGVY D G LY+G+A L+ RI ++ +++ + + N Sbjct: 252 LNLDSLPNTPGVYLFRDSTG-YLYIGEAIRLRDRIGDHLRGSHNAGLASILGDDATNPVT 310 Query: 58 IRFTVTCTEVEALLL------EANMIKRLKPRFN 85 + + A L E+ +I+ PRFN Sbjct: 311 LELHAFPNDSPAKKLTVRRAYESELIRSRHPRFN 344 >gi|28493381|ref|NP_787542.1| DNA ligase [Tropheryma whipplei str. Twist] gi|28476422|gb|AAO44511.1| DNA ligase [Tropheryma whipplei str. Twist] Length = 634 Score = 60.9 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 6/64 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 +A SPL I IGP + L FG+++ I + + L + + + IA ++ Sbjct: 551 RAKRSPLWKFLLALNIRHIGPASAKALADHFGSIESIINAKIDELLKVRSLGETIAISVH 610 Query: 605 NHFH 608 + F Sbjct: 611 DWFR 614 >gi|14520497|ref|NP_125972.1| Hef nuclease [Pyrococcus abyssi GE5] gi|5457712|emb|CAB49203.1| Putative ATP-dependent ERCC4-like helicase [Pyrococcus abyssi GE5] Length = 752 Score = 60.9 bits (146), Expect = 6e-07, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 26/48 (54%) Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 + + + + LL+ FG+V+ + +S L +EGI +KIA +I Sbjct: 696 ESLPHVSATLAKRLLKHFGSVERVFTASVPELMKVEGIGEKIAREIRR 743 >gi|16077730|ref|NP_388544.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis str. 168] gi|221308499|ref|ZP_03590346.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis str. 168] gi|221312822|ref|ZP_03594627.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317746|ref|ZP_03599040.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis str. JH642] gi|221322025|ref|ZP_03603319.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis str. SMY] gi|7673987|sp|O31498|DNLJ_BACSU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|2632976|emb|CAB12482.1| DNA ligase [Bacillus subtilis subsp. subtilis str. 168] Length = 668 Score = 60.9 bits (146), Expect = 6e-07, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 6/66 (9%) Query: 550 KKAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 +K+ + L+ I IG + L F +++ + ++S E L +++ I +K+A + Sbjct: 496 QKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKKASKEELLAVDEIGEKMADAV 555 Query: 604 YNHFHK 609 +FHK Sbjct: 556 ITYFHK 561 >gi|321314391|ref|YP_004206678.1| NAD-dependent DNA ligase LigA [Bacillus subtilis BSn5] gi|320020665|gb|ADV95651.1| NAD-dependent DNA ligase LigA [Bacillus subtilis BSn5] Length = 668 Score = 60.9 bits (146), Expect = 6e-07, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 6/66 (9%) Query: 550 KKAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 +K+ + L+ I IG + L F +++ + ++S E L +++ I +K+A + Sbjct: 496 QKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKKASKEELLAVDEIGEKMADAV 555 Query: 604 YNHFHK 609 +FHK Sbjct: 556 ITYFHK 561 >gi|288931017|ref|YP_003435077.1| helicase [Ferroglobus placidus DSM 10642] gi|288893265|gb|ADC64802.1| helicase domain protein [Ferroglobus placidus DSM 10642] Length = 761 Score = 60.9 bits (146), Expect = 6e-07, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 4/65 (6%) Query: 545 HRKRRKKAAYSPLD----EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 H + K+ ++ I+ +GP+ + LL+ F T++ I+ +S E L ++ + +K A Sbjct: 668 HSGKSKRTLKDEMEYIVSAISNVGPVIAKNLLKEFQTIERIATASVEELMKVKNVGRKTA 727 Query: 601 CKIYN 605 +I Sbjct: 728 ERIRK 732 >gi|291483102|dbj|BAI84177.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. natto BEST195] Length = 668 Score = 60.9 bits (146), Expect = 6e-07, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 6/66 (9%) Query: 550 KKAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 +K+ + L+ I IG + L F +++ + ++S E L +++ I +K+A + Sbjct: 496 QKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKKASKEELLAVDEIGEKMADAV 555 Query: 604 YNHFHK 609 +FHK Sbjct: 556 ITYFHK 561 >gi|297559142|ref|YP_003678116.1| DNA ligase, NAD-dependent [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843590|gb|ADH65610.1| DNA ligase, NAD-dependent [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 775 Score = 60.9 bits (146), Expect = 6e-07, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 24/49 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP L + F ++ I +S E LA+++G+ IA I F Sbjct: 567 SIRHVGPRAAEDLARHFRSMDAIRAASEEELAAVDGVGPTIAASIREWF 615 >gi|225620892|ref|YP_002722150.1| NAD-dependent DNA ligase LigA [Brachyspira hyodysenteriae WA1] gi|254781267|sp|C0QVE5|DNLJ_BRAHW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|225215712|gb|ACN84446.1| NAD-dependent DNA ligase LigA [Brachyspira hyodysenteriae WA1] Length = 663 Score = 60.9 bits (146), Expect = 6e-07, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 26/50 (52%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G LL + F +++ +++ + L +IEGI + A IY+ H + Sbjct: 515 VGETTADLLAKYFTSIENFKKATIDDLQNIEGIGEISAKSIYDFLHNEKT 564 >gi|288927843|ref|ZP_06421690.1| DNA ligase, NAD-dependent [Prevotella sp. oral taxon 317 str. F0108] gi|288330677|gb|EFC69261.1| DNA ligase, NAD-dependent [Prevotella sp. oral taxon 317 str. F0108] Length = 665 Score = 60.9 bits (146), Expect = 6e-07, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 25/50 (50%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G +LL + F ++ + ++PE L +EG+ IA + FH + Sbjct: 515 VGETTAKLLAKHFKSIDALMVATPEQLVEVEGVGTVIAESVVRFFHDEVN 564 >gi|220935604|ref|YP_002514503.1| ERCC4 domain-containing protein [Thioalkalivibrio sp. HL-EbGR7] gi|219996914|gb|ACL73516.1| ERCC4 domain-containing protein [Thioalkalivibrio sp. HL-EbGR7] Length = 234 Score = 60.9 bits (146), Expect = 6e-07, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Query: 546 RKRRKKAAYS-PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 R + K+A S L + +G R LL FG+V+ + R+ L ++GI ++ A I Sbjct: 155 RPKGKRALQSHILQSLPRVGAERAARLLDRFGSVEAVIRAGDAELKEVDGIGQRTARCI 213 >gi|323165292|gb|EFZ51080.1| uvrABC system C domain protein [Shigella sonnei 53G] gi|323186312|gb|EFZ71662.1| uvrABC system protein C domain protein [Escherichia coli 1357] gi|323186792|gb|EFZ72112.1| uvrABC system protein C domain protein [Escherichia coli RN587/1] gi|332096733|gb|EGJ01724.1| uvrABC system protein C domain protein [Shigella boydii 3594-74] Length = 40 Score = 60.9 bits (146), Expect = 7e-07, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 22/34 (64%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 LL+ G ++ + +S E +A + GIS+ +A KI+ Sbjct: 2 LLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIF 35 >gi|297278235|ref|XP_002801517.1| PREDICTED: Fanconi anemia-associated protein of 24 kDa-like, partial [Macaca mulatta] Length = 105 Score = 60.9 bits (146), Expect = 7e-07, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +I G+G ++ LLLQ F +++ +S +S L + G + +A +I+ F Sbjct: 55 QIPGVGKVKAPLLLQKFPSIQQLSNASIRELEQVVG--QAVAKQIHAFF 101 >gi|327285448|ref|XP_003227445.1| PREDICTED: Fanconi anemia-associated protein of 24 kDa-like [Anolis carolinensis] Length = 211 Score = 60.9 bits (146), Expect = 7e-07, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 6/65 (9%) Query: 547 KRRKKAAYSPL----DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 K+ K S + +I G+G + LLL+ F ++ + +S L + G + +A + Sbjct: 147 KKSPKLLESSIIQTVQQIPGVGKAKALLLLERFRSLHQLCNASVPDLEEVVG--RSLAQQ 204 Query: 603 IYNHF 607 I+ F Sbjct: 205 IHAFF 209 >gi|257386865|ref|YP_003176638.1| Hef nuclease [Halomicrobium mukohataei DSM 12286] gi|257169172|gb|ACV46931.1| helicase domain protein [Halomicrobium mukohataei DSM 12286] Length = 851 Score = 60.9 bits (146), Expect = 7e-07, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 24/40 (60%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 +GP+ R LL+ FG+V+ + + + L ++G+ + A + Sbjct: 801 VGPVTARALLEHFGSVEAVMTADEDELMDVDGVGEVTAER 840 >gi|15679414|ref|NP_276531.1| Hef nuclease [Methanothermobacter thermautotrophicus str. Delta H] gi|2622527|gb|AAB85892.1| ATP-dependent RNA helicase, eIF-4A family [Methanothermobacter thermautotrophicus str. Delta H] Length = 738 Score = 60.5 bits (145), Expect = 8e-07, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Query: 548 RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 R+K + ++ + IG LL++FG+V+ + +S + L S+EGI K A +I Sbjct: 664 LREKQLF-IVESLPNIGSKYAERLLEAFGSVEGVMNASEKELRSVEGIGAKRASEIRR 720 >gi|206895761|ref|YP_002246502.1| DNA ligase, NAD-dependent [Coprothermobacter proteolyticus DSM 5265] gi|254781298|sp|B5Y6V5|DNLJ_COPPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|206738378|gb|ACI17456.1| DNA ligase, NAD-dependent [Coprothermobacter proteolyticus DSM 5265] Length = 666 Score = 60.5 bits (145), Expect = 8e-07, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 23/50 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I +G ++L + FG++ + ++ + L SIEGI A I Sbjct: 513 GIPRVGLKTAQMLAEHFGSINALLNATMDELTSIEGIGTDTAETILKALQ 562 >gi|254173751|ref|ZP_04880423.1| Type III restriction enzyme, res subunit family [Thermococcus sp. AM4] gi|214032443|gb|EEB73273.1| Type III restriction enzyme, res subunit family [Thermococcus sp. AM4] Length = 807 Score = 60.5 bits (145), Expect = 8e-07, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 29/109 (26%) Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556 +AK + E + +AL L R QRL Sbjct: 717 LAKREQEERKKEVRLRGEKKALTLAER-------QRL----------------------I 747 Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 ++ + + + LL+ FG V+ + ++ E L +EGI K A +I Sbjct: 748 VEGLPNVSSTLAKRLLKHFGNVERVFTATEEELKEVEGIGPKKAREIRK 796 >gi|188587790|ref|YP_001919828.1| NAD-dependent DNA ligase LigA [Clostridium botulinum E3 str. Alaska E43] gi|254781291|sp|B2UZ23|DNLJ_CLOBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|188498071|gb|ACD51207.1| DNA ligase, NAD-dependent [Clostridium botulinum E3 str. Alaska E43] Length = 667 Score = 60.5 bits (145), Expect = 8e-07, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 23/52 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +G + ++ F ++ + ++ E L S++ + +A I F + Sbjct: 513 GIPNVGVKTAKDIVNKFKSIDGLKNATFEELVSVQDVGDIVAQDIIEFFKEE 564 >gi|118431455|ref|NP_147940.2| repair endonuclease XPF [Aeropyrum pernix K1] gi|116062779|dbj|BAA80433.2| repair endonuclease XPF [Aeropyrum pernix K1] Length = 248 Score = 60.5 bits (145), Expect = 8e-07, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L GIG +L+ FG+++ +S ++ +EGI +K A +I Sbjct: 167 ILQSFPGIGRRTAERILERFGSLERFFTASKAEISKVEGIGEKRAEEIKKIL 218 >gi|300709530|ref|YP_003735344.1| Hef nuclease [Halalkalicoccus jeotgali B3] gi|299123213|gb|ADJ13552.1| Hef nuclease [Halalkalicoccus jeotgali B3] Length = 799 Score = 60.5 bits (145), Expect = 8e-07, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%) Query: 545 HRKRRKKAAYSPLDEING----IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 H K+ K + + G IGP+ R LL++FG+V+ + +S E L EG+ + A Sbjct: 724 HGKKSSKTLAEQQEYVVGSIADIGPVTARSLLEAFGSVEAVLTASEEELMDAEGVGEVTA 783 Query: 601 CKIYN 605 +I Sbjct: 784 GRIRE 788 >gi|221632243|ref|YP_002521464.1| DNA ligase, NAD-dependent [Thermomicrobium roseum DSM 5159] gi|254781441|sp|B9KXM2|DNLJ_THERP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|221155911|gb|ACM05038.1| DNA ligase, NAD-dependent [Thermomicrobium roseum DSM 5159] Length = 695 Score = 60.5 bits (145), Expect = 8e-07, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 22/51 (43%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G +LL F ++ + ++ + L I G +A ++ F + Sbjct: 529 GIRHVGERNAQLLADHFRSIDRLMEATIDELLQIPGFGPAVAQSVFEFFRE 579 >gi|160899029|ref|YP_001564611.1| NAD-dependent DNA ligase [Delftia acidovorans SPH-1] gi|254781308|sp|A9BZW4|DNLJ_DELAS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|160364613|gb|ABX36226.1| DNA ligase, NAD-dependent [Delftia acidovorans SPH-1] Length = 703 Score = 60.5 bits (145), Expect = 8e-07, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 3/63 (4%) Query: 548 RRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 + KK S I +G + L + FG + I +S E L + + +A I+ Sbjct: 533 KSKKTTLSRFLFGLGIRQVGESTAKDLARHFGQLDAIMDASVEQLLQVRDVGPIVAESIH 592 Query: 605 NHF 607 F Sbjct: 593 TFF 595 >gi|15835041|ref|NP_296800.1| NAD-dependent DNA ligase LigA [Chlamydia muridarum Nigg] gi|270285206|ref|ZP_06194600.1| NAD-dependent DNA ligase LigA [Chlamydia muridarum Nigg] gi|270289225|ref|ZP_06195527.1| NAD-dependent DNA ligase LigA [Chlamydia muridarum Weiss] gi|301336602|ref|ZP_07224804.1| NAD-dependent DNA ligase LigA [Chlamydia muridarum MopnTet14] gi|13626415|sp|Q9PKP2|DNLJ_CHLMU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|7190466|gb|AAF39279.1| DNA ligase [Chlamydia muridarum Nigg] Length = 660 Score = 60.5 bits (145), Expect = 8e-07, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 28/54 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G L FGT+ + ++S + L SIEGI +K+A I + F K + Sbjct: 508 SIPFVGSSGAIALADHFGTLDKVMKASLDELLSIEGIGQKVAASIIDFFSKTEN 561 >gi|323702801|ref|ZP_08114460.1| DNA ligase, NAD-dependent [Desulfotomaculum nigrificans DSM 574] gi|323532189|gb|EGB22069.1| DNA ligase, NAD-dependent [Desulfotomaculum nigrificans DSM 574] Length = 669 Score = 60.5 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 28/56 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G ++L + FG++ + ++ E L I I KIA I ++F + + T Sbjct: 515 GIRHVGERAAKILARHFGSMSALMAATVEDLTVIPEIGPKIAESIVDYFARPENKT 570 >gi|182419331|ref|ZP_02950583.1| DNA ligase, NAD-dependent [Clostridium butyricum 5521] gi|237666454|ref|ZP_04526439.1| DNA ligase, NAD-dependent [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376662|gb|EDT74234.1| DNA ligase, NAD-dependent [Clostridium butyricum 5521] gi|237657653|gb|EEP55208.1| DNA ligase, NAD-dependent [Clostridium butyricum E4 str. BoNT E BL5262] Length = 663 Score = 60.5 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 24/52 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +G + L+ F +++ + ++ E L S+ + +A + + F + Sbjct: 511 GIPNVGVKTAKDLVSRFKSIEGLKNATFEELVSVPDVGDIVAQDVMSFFKEE 562 >gi|157363572|ref|YP_001470339.1| DNA ligase, NAD-dependent [Thermotoga lettingae TMO] gi|190359296|sp|A8F541|DNLJ_THELT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157314176|gb|ABV33275.1| DNA ligase, NAD-dependent [Thermotoga lettingae TMO] Length = 678 Score = 60.5 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 27/54 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G R+L Q F ++K + SS + L IEGI +IA I +F + Sbjct: 515 GIPLVGEKTARILTQKFRSIKRLLSSSVDELTQIEGIGIEIAKNIREYFDNEKT 568 >gi|61680877|pdb|2BGW|A Chain A, Xpf From Aeropyrum Pernix, Complex With Dna gi|61680878|pdb|2BGW|B Chain B, Xpf From Aeropyrum Pernix, Complex With Dna Length = 219 Score = 60.5 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L GIG +L+ FG+++ +S ++ +EGI +K A +I Sbjct: 163 ILQSFPGIGRRTAERILERFGSLERFFTASKAEISKVEGIGEKRAEEIKKIL 214 >gi|332879161|ref|ZP_08446862.1| DNA protecting protein DprA [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682961|gb|EGJ55857.1| DNA protecting protein DprA [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 365 Score = 60.5 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN---HFHKNTS 612 L +I +G + R LL FG+ + I S E L + GI KIA + + + H+ + Sbjct: 10 ALKKIPLVGDITARKLLTHFGSAQRIFAQSREKLEKLIGIGSKIADNVLHSATYLHEAEA 69 Query: 613 H 613 Sbjct: 70 E 70 >gi|332854677|ref|XP_512569.3| PREDICTED: Fanconi anemia-associated protein of 24 kDa-like isoform 2 [Pan troglodytes] Length = 215 Score = 60.1 bits (144), Expect = 9e-07, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +I G+G ++ LLLQ F +++ +S +S L + G + +A +I+ F Sbjct: 165 QIPGVGKVKAPLLLQKFPSIQQLSNASIGELEQVVG--QAVAQQIHAFF 211 >gi|297704351|ref|XP_002829069.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia-associated protein of 24 kDa-like [Pongo abelii] Length = 215 Score = 60.1 bits (144), Expect = 9e-07, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +I G+G ++ LLLQ F +++ +S +S L + G + +A +I+ F Sbjct: 165 QIPGVGKVKAPLLLQKFPSIQQLSNASIGELEQVVG--QAVAQQIHAFF 211 >gi|114676520|ref|XP_001152811.1| PREDICTED: similar to Chromosome 19 open reading frame 40 isoform 1 [Pan troglodytes] Length = 172 Score = 60.1 bits (144), Expect = 9e-07, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +I G+G ++ LLLQ F +++ +S +S L + G + +A +I+ F Sbjct: 122 QIPGVGKVKAPLLLQKFPSIQQLSNASIGELEQVVG--QAVAQQIHAFF 168 >gi|22748623|ref|NP_689479.1| Fanconi anemia-associated protein of 24 kDa [Homo sapiens] gi|74733136|sp|Q9BTP7|FAP24_HUMAN RecName: Full=Fanconi anemia-associated protein of 24 kDa gi|18044260|gb|AAH20247.1| Chromosome 19 open reading frame 40 [Homo sapiens] gi|33874873|gb|AAH10170.2| Chromosome 19 open reading frame 40 [Homo sapiens] gi|37514846|gb|AAH03535.2| Chromosome 19 open reading frame 40 [Homo sapiens] gi|193785921|dbj|BAG54708.1| unnamed protein product [Homo sapiens] gi|312151278|gb|ADQ32151.1| chromosome 19 open reading frame 40 [synthetic construct] Length = 215 Score = 60.1 bits (144), Expect = 9e-07, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +I G+G ++ LLLQ F +++ +S +S L + G + +A +I+ F Sbjct: 165 QIPGVGKVKAPLLLQKFPSIQQLSNASIGELEQVVG--QAVAQQIHAFF 211 >gi|251777669|ref|ZP_04820589.1| DNA ligase, NAD-dependent [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243081984|gb|EES47874.1| DNA ligase, NAD-dependent [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 667 Score = 60.1 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 23/52 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +G + ++ F ++ + ++ E L S++ + +A I F + Sbjct: 513 GIPNVGVKTAKDIVNKFKSIDGLKNATFEELVSVQDVGDIVAKDIIEFFKEE 564 >gi|126172618|ref|YP_001048767.1| ERCC4 domain-containing protein [Shewanella baltica OS155] gi|125995823|gb|ABN59898.1| ERCC4 domain protein [Shewanella baltica OS155] Length = 212 Score = 60.1 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 26/61 (42%) Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 KR K L + +GP LL F +V+ + +S E L + GI K A KI Sbjct: 150 KRTKNQQLFILQSLPEVGPKLANKLLCHFASVEAVVTASEEALMQVGGIGKNKASKIREV 209 Query: 607 F 607 Sbjct: 210 L 210 >gi|222054654|ref|YP_002537016.1| DNA protecting protein DprA [Geobacter sp. FRC-32] gi|221563943|gb|ACM19915.1| DNA protecting protein DprA [Geobacter sp. FRC-32] Length = 359 Score = 60.1 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 29/51 (56%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 L + G+G + R LL++F T + + ++S LA ++GIS +A I H Sbjct: 8 ALKSVPGVGNVTFRKLLEAFETPERVLKASVNELARVKGISPNLAASIVTH 58 >gi|15895931|ref|NP_349280.1| NAD-dependent DNA ligase LigA [Clostridium acetobutylicum ATCC 824] gi|81529669|sp|Q97FQ5|DNLJ2_CLOAB RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 2 gi|15025704|gb|AAK80620.1|AE007765_2 NAD-dependent DNA ligase [Clostridium acetobutylicum ATCC 824] Length = 669 Score = 60.1 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 22/52 (42%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +G L + F + + I ++S + L ++ I +A I F + Sbjct: 516 GIPNVGKKTATDLCKQFKSFENIKKASYDELILVQDIGSIVAESIVEFFKQE 567 >gi|325510083|gb|ADZ21719.1| NAD-dependent DNA ligase LigA [Clostridium acetobutylicum EA 2018] Length = 669 Score = 60.1 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 22/52 (42%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +G L + F + + I ++S + L ++ I +A I F + Sbjct: 516 GIPNVGKKTATDLCKQFKSFENIKKASYDELILVQDIGSIVAESIVEFFKQE 567 >gi|313673736|ref|YP_004051847.1| DNA ligase, nad-dependent [Calditerrivibrio nitroreducens DSM 19672] gi|312940492|gb|ADR19684.1| DNA ligase, NAD-dependent [Calditerrivibrio nitroreducens DSM 19672] Length = 655 Score = 60.1 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 24/51 (47%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I+G+G + L F ++ I +S + L I GI ++ I+ F + Sbjct: 503 GIDGVGIKMAQTLALHFKSIDSIMAASIDDLMDIYGIGDEVGRSIFEFFRE 553 >gi|218883987|ref|YP_002428369.1| ERCC4 domain protein [Desulfurococcus kamchatkensis 1221n] gi|218765603|gb|ACL11002.1| ERCC4 domain protein [Desulfurococcus kamchatkensis 1221n] Length = 238 Score = 60.1 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 29/46 (63%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 IGP+ R LL F T+K ++ +S L S+EGI +K A +IY F+ Sbjct: 182 IGPVLARKLLARFKTLKNLANASKHELLSVEGIGEKRAEEIYLLFN 227 >gi|296135970|ref|YP_003643212.1| DNA ligase, NAD-dependent [Thiomonas intermedia K12] gi|295796092|gb|ADG30882.1| DNA ligase, NAD-dependent [Thiomonas intermedia K12] Length = 688 Score = 60.1 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 20/49 (40%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G + L + FG + I +S E L + + +A I F Sbjct: 532 GIRHVGEATAKDLARHFGGLDAILDASLEQLLEVPDVGPVVAQSIRTFF 580 >gi|50753790|ref|XP_414132.1| PREDICTED: hypothetical protein [Gallus gallus] Length = 215 Score = 60.1 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +I G+G + LLLQ FG++ I +S + L + G + +A +I+ Sbjct: 167 QIPGVGKTKALLLLQQFGSIHQICNASVKELELVVG--QTVAQQIHTFL 213 >gi|170733380|ref|YP_001765327.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia MC0-3] gi|254781274|sp|B1JUF5|DNLJ_BURCC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|169816622|gb|ACA91205.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia MC0-3] Length = 691 Score = 60.1 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA ++ L I +G + L + FG++ I +S E L + + +A ++ Sbjct: 519 KAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDASIEELLEVNDVGPIVAESLH 578 Query: 605 NHFHKNTSHT 614 F + + T Sbjct: 579 QFFAEEHNRT 588 >gi|116690045|ref|YP_835668.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia HI2424] gi|166215562|sp|A0K8E8|DNLJ_BURCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166215593|sp|Q1BHI7|DNLJ_BURCA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116648134|gb|ABK08775.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia HI2424] Length = 691 Score = 60.1 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA ++ L I +G + L + FG++ I +S E L + + +A ++ Sbjct: 519 KAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDASIEELLEVNDVGPIVAESLH 578 Query: 605 NHFHKNTSHT 614 F + + T Sbjct: 579 QFFAEEHNRT 588 >gi|78066803|ref|YP_369572.1| DNA ligase (NAD+) [Burkholderia sp. 383] gi|123742568|sp|Q39F38|DNLJ_BURS3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|77967548|gb|ABB08928.1| DNA ligase (NAD+) [Burkholderia sp. 383] Length = 691 Score = 60.1 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA ++ L I +G + L + FG++ I +S E L + + +A ++ Sbjct: 519 KAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDASIEELLEVNDVGPIVAESLH 578 Query: 605 NHFHKNTSHT 614 F + + T Sbjct: 579 QFFAEEHNRT 588 >gi|107028796|ref|YP_625891.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia AU 1054] gi|105897960|gb|ABF80918.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia AU 1054] Length = 746 Score = 60.1 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA ++ L I +G + L + FG++ I +S E L + + +A ++ Sbjct: 574 KAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDASIEELLEVNDVGPIVAESLH 633 Query: 605 NHFHKNTSHT 614 F + + T Sbjct: 634 QFFAEEHNRT 643 >gi|61680885|pdb|2BHN|A Chain A, Xpf From Aeropyrum Pernix gi|61680886|pdb|2BHN|B Chain B, Xpf From Aeropyrum Pernix gi|61680887|pdb|2BHN|C Chain C, Xpf From Aeropyrum Pernix gi|61680888|pdb|2BHN|D Chain D, Xpf From Aeropyrum Pernix Length = 214 Score = 60.1 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L GIG +L+ FG+++ +S ++ +EGI +K A +I Sbjct: 156 ILQSFPGIGRRTAERILERFGSLERFFTASKAEISKVEGIGEKRAEEIKKIL 207 >gi|325335472|gb|ADZ11746.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Riemerella anatipestifer RA-GD] Length = 669 Score = 60.1 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 28/54 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G + L+++F T+ + +++ E L +E + KIA + N+F + Sbjct: 514 GIKHVGETVAKKLVKNFHTIDGLKKATLEELTEVEDVGIKIAESLVNYFQNEEN 567 >gi|126465094|ref|YP_001040203.1| ERCC4 domain-containing protein [Staphylothermus marinus F1] gi|126013917|gb|ABN69295.1| ERCC4 domain protein [Staphylothermus marinus F1] Length = 235 Score = 60.1 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 28/46 (60%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 +GP R LL+ F T++ I+ +S + L +EGI K A +IY F+ Sbjct: 182 VGPTLARKLLREFKTLRNIANASIKELMVVEGIGVKRANEIYLIFN 227 >gi|77024937|gb|ABA61364.1| ATP-dependent RNA helicase [uncultured marine group II euryarchaeote HF70_59C08] Length = 878 Score = 60.1 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 35/63 (55%) Query: 546 RKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 RK+ S L+++ G+GP +L+ + T+ +S++ + + I+G+S ++A +I Sbjct: 813 RKQSHGITRSMLEQVPGVGPALASRILERWPTIAELSKARDDEIVEIKGLSVQLAQQIVR 872 Query: 606 HFH 608 H Sbjct: 873 ILH 875 >gi|147898967|ref|NP_001082992.1| Fanconi anemia-associated protein of 24 kDa [Danio rerio] gi|126631525|gb|AAI33927.1| Zgc:162267 protein [Danio rerio] Length = 215 Score = 60.1 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 11/69 (15%) Query: 550 KKAAYSPLDE---------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 ++ S L + I G+G ++ +LLLQ+F ++ +SR+S + L + G A Sbjct: 146 RRRTVSRLLDPLVLSLVQQIPGVGKVKAQLLLQTFPSILQLSRASVQELEPVVG--PATA 203 Query: 601 CKIYNHFHK 609 I FH Sbjct: 204 QHIRGFFHN 212 >gi|313207091|ref|YP_004046268.1| DNA ligase, naD-dependent [Riemerella anatipestifer DSM 15868] gi|312446407|gb|ADQ82762.1| DNA ligase, NAD-dependent [Riemerella anatipestifer DSM 15868] gi|315022511|gb|EFT35538.1| DNA ligase [Riemerella anatipestifer RA-YM] Length = 669 Score = 60.1 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 28/54 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G + L+++F T+ + +++ E L +E + KIA + N+F + Sbjct: 514 GIKHVGETVAKKLVKNFHTIDGLKKATLEELTEVEDVGIKIAESLVNYFQNEEN 567 >gi|292657118|ref|YP_003537015.1| ATP-dependent RNA helicase/nuclease Hef [Haloferax volcanii DS2] gi|291371263|gb|ADE03490.1| ATP-dependent RNA helicase/nuclease Hef [Haloferax volcanii DS2] Length = 858 Score = 60.1 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 27/46 (58%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 I IGP+ R LL++FG+V+ + ++ E L + G+ + A +I Sbjct: 806 IADIGPVTARTLLEAFGSVEAVMTANEEDLKEVRGVGQVTAERIRE 851 >gi|73668740|ref|YP_304755.1| Hef nuclease [Methanosarcina barkeri str. Fusaro] gi|72395902|gb|AAZ70175.1| ATP-dependent RNA helicase, EIF-4A family [Methanosarcina barkeri str. Fusaro] Length = 938 Score = 60.1 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 23/46 (50%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 I IGP R LL FG+V+ I ++ + L + I K A KI Sbjct: 885 IADIGPKAARNLLLHFGSVEAIMKADAKELKKVNLIGPKRATKIRE 930 >gi|320100599|ref|YP_004176191.1| ERCC4 domain-containing protein [Desulfurococcus mucosus DSM 2162] gi|319752951|gb|ADV64709.1| ERCC4 domain protein [Desulfurococcus mucosus DSM 2162] Length = 241 Score = 60.1 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 30/46 (65%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 IGP+ R LL+ F T++ ++ +S L S+EGI +K A +IY F+ Sbjct: 182 IGPVLARKLLERFKTLRNLANASKHDLLSVEGIGEKRAEEIYLLFN 227 >gi|118444950|ref|YP_878905.1| NAD-dependent DNA ligase LigA [Clostridium novyi NT] gi|166215579|sp|A0Q2Q3|DNLJ_CLONN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|118135406|gb|ABK62450.1| DNA ligase, NAD-dependent [Clostridium novyi NT] Length = 664 Score = 60.1 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G L + F T+ + ++ E L S+E I +A + + F+ T Sbjct: 513 GIPNVGKKTSTDLCKKFKTLDNLKKAKFEELVSVEDIGDIVAQSVLDFFNDET 565 >gi|213580982|ref|ZP_03362808.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 80 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%) Query: 5 QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNN 43 + P PGVY + LY+GK+ N++ R+ S++ + + Sbjct: 39 EAPALPGVYIFHSESDTLPLYIGKSVNIRSRVLSHLRTPD 78 >gi|57640956|ref|YP_183434.1| Hef nuclease [Thermococcus kodakarensis KOD1] gi|57159280|dbj|BAD85210.1| helicase-associated endonuclease for fork-structured DNA [Thermococcus kodakarensis KOD1] Length = 804 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 29/109 (26%) Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556 +AK + E + +AL L R QRL Sbjct: 718 MAKREQEERKKEVRLRSEKKALTLAER-------QRL----------------------I 748 Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 ++ + + + LL+ FG V+ + ++ E L +EGI K A +I Sbjct: 749 VEGLPNVSATLAKRLLKHFGNVERVFTATEEELKEVEGIGPKKAREIRR 797 >gi|168183572|ref|ZP_02618236.1| DNA ligase (NAD(+)) [Clostridium botulinum Bf] gi|237796711|ref|YP_002864263.1| NAD-dependent DNA ligase LigA [Clostridium botulinum Ba4 str. 657] gi|254781290|sp|C3KUA1|DNLJ_CLOB6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|182673387|gb|EDT85348.1| DNA ligase (NAD(+)) [Clostridium botulinum Bf] gi|229263356|gb|ACQ54389.1| DNA ligase, NAD-dependent [Clostridium botulinum Ba4 str. 657] Length = 664 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 23/49 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G L+ F T++ I ++ E L + + + +A IY+ F Sbjct: 513 GIPNVGKKTANDLVMKFKTLESIKNTTIEQLVEVPDVGEIVAKSIYDFF 561 >gi|300870442|ref|YP_003785313.1| NAD-dependent DNA ligase [Brachyspira pilosicoli 95/1000] gi|300688141|gb|ADK30812.1| NAD-dependent DNA ligase [Brachyspira pilosicoli 95/1000] Length = 663 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 26/50 (52%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G LL + F +V+ +++ + L +IEGI + A IY+ H + Sbjct: 515 VGETTADLLAKYFTSVENFKKATIDDLQNIEGIGEISAKSIYDFLHNKKT 564 >gi|294054681|ref|YP_003548339.1| DNA ligase, NAD-dependent [Coraliomargarita akajimensis DSM 45221] gi|293614014|gb|ADE54169.1| DNA ligase, NAD-dependent [Coraliomargarita akajimensis DSM 45221] Length = 711 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 27/54 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G + L F ++ ++R+S E L +I+GI +A I+ F + + Sbjct: 560 GIPHVGKQSAKDLEAHFESLDALARASEEQLEAIDGIGSIMAQSIHAWFEDSEN 613 >gi|226950696|ref|YP_002805787.1| DNA ligase, NAD-dependent [Clostridium botulinum A2 str. Kyoto] gi|254781293|sp|C1FLS8|DNLJ_CLOBJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|226842063|gb|ACO84729.1| DNA ligase, NAD-dependent [Clostridium botulinum A2 str. Kyoto] Length = 664 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 23/49 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G L+ F T++ I ++ E L + + + +A IY+ F Sbjct: 513 GIPNVGKKTANDLVMKFKTLESIKNTTIEQLVEVPDVGEIVAKSIYDFF 561 >gi|153940260|ref|YP_001392616.1| NAD-dependent DNA ligase LigA [Clostridium botulinum F str. Langeland] gi|166215578|sp|A7GIK6|DNLJ_CLOBL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|152936156|gb|ABS41654.1| DNA ligase, NAD-dependent [Clostridium botulinum F str. Langeland] gi|295320603|gb|ADG00981.1| DNA ligase, NAD-dependent [Clostridium botulinum F str. 230613] Length = 664 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 23/49 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G L+ F T++ I ++ E L + + + +A IY+ F Sbjct: 513 GIPNVGKKTANDLVMKFKTLESIKNTTIEQLVEVPDVGEIVAKSIYDFF 561 >gi|258510685|ref|YP_003184119.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477411|gb|ACV57730.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 684 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 6/62 (9%) Query: 552 AAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 + + L+ I +G + L + F T+ + +S E L ++ I K+A I Sbjct: 507 SKRNSLERLLFGLGIRHVGEKAAKTLAEHFVTIDALMSASEEDLMAVPDIGPKVAQSIRQ 566 Query: 606 HF 607 +F Sbjct: 567 YF 568 >gi|322807581|emb|CBZ05156.1| DNA ligase [Clostridium botulinum H04402 065] Length = 664 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 23/49 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G L+ F T++ I ++ E L + + + +A IY+ F Sbjct: 513 GIPNVGKKTANDLVMKFKTLESIKNTTIEQLVEVPDVGEIVAKSIYDFF 561 >gi|170756080|ref|YP_001782894.1| NAD-dependent DNA ligase LigA [Clostridium botulinum B1 str. Okra] gi|254781294|sp|B1ING1|DNLJ_CLOBK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|169121292|gb|ACA45128.1| DNA ligase, NAD-dependent [Clostridium botulinum B1 str. Okra] Length = 664 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 23/49 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G L+ F T++ I ++ E L + + + +A IY+ F Sbjct: 513 GIPNVGKKTANDLVMKFKTLESIKNTTIEQLVEVPDVGEIVAKSIYDFF 561 >gi|168179082|ref|ZP_02613746.1| DNA ligase, NAD-dependent [Clostridium botulinum NCTC 2916] gi|182670115|gb|EDT82091.1| DNA ligase, NAD-dependent [Clostridium botulinum NCTC 2916] Length = 664 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 23/49 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G L+ F T++ I ++ E L + + + +A IY+ F Sbjct: 513 GIPNVGKKTANDLVMKFKTLESIKNTTIEQLVEVPDVGEIVAKSIYDFF 561 >gi|121611375|ref|YP_999182.1| DNA ligase [Verminephrobacter eiseniae EF01-2] gi|166216275|sp|A1WRA7|DNLJ_VEREI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|121556015|gb|ABM60164.1| DNA ligase, NAD-dependent [Verminephrobacter eiseniae EF01-2] Length = 693 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 22/47 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G + L + FGT+ I +S E L + I +A ++ F + Sbjct: 543 VGEATAKDLARHFGTLDAIMNASVEQLLQVSDIGPVVAQSLHCFFQQ 589 >gi|328953957|ref|YP_004371291.1| NusA antitermination factor [Desulfobacca acetoxidans DSM 11109] gi|328454281|gb|AEB10110.1| NusA antitermination factor [Desulfobacca acetoxidans DSM 11109] Length = 442 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIY 604 L +I G+G + L ++ F + K ++ ++ L + GI++K A +I Sbjct: 354 SLLKIPGVGEMTASALYEAGFTSAKEVAEANLAELMQVPGINEKKATQIL 403 >gi|317056400|ref|YP_004104867.1| DNA ligase, NAD-dependent [Ruminococcus albus 7] gi|315448669|gb|ADU22233.1| DNA ligase, NAD-dependent [Ruminococcus albus 7] Length = 659 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 6/66 (9%) Query: 551 KAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ LD I IG +LL FG + I ++ E ++ I+G +A +Y Sbjct: 495 KSRSVSLDRLIFGLGIRNIGQASAKLLCAKFGGLDSIMSATAEEISGIDGFGVVMAQSVY 554 Query: 605 NHFHKN 610 N FH+ Sbjct: 555 NAFHEE 560 >gi|148381215|ref|YP_001255756.1| DNA ligase, NAD-dependent [Clostridium botulinum A str. ATCC 3502] gi|153931904|ref|YP_001385590.1| NAD-dependent DNA ligase LigA [Clostridium botulinum A str. ATCC 19397] gi|153935840|ref|YP_001388996.1| NAD-dependent DNA ligase LigA [Clostridium botulinum A str. Hall] gi|166215576|sp|A7FYL7|DNLJ_CLOB1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166215577|sp|A5I6Z7|DNLJ_CLOBH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|148290699|emb|CAL84829.1| DNA ligase [Clostridium botulinum A str. ATCC 3502] gi|152927948|gb|ABS33448.1| DNA ligase, NAD-dependent [Clostridium botulinum A str. ATCC 19397] gi|152931754|gb|ABS37253.1| DNA ligase, NAD-dependent [Clostridium botulinum A str. Hall] Length = 664 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 23/49 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G L+ F T++ I ++ E L + + + +A IY+ F Sbjct: 513 GIPNVGKKTANDLVMKFKTLESIKNTTIEQLVEVPDVGEIVAKSIYDFF 561 >gi|320166062|gb|EFW42961.1| excision repair enzyme ERCC-1 [Capsaspora owczarzaki ATCC 30864] Length = 509 Score = 59.7 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 28/54 (51%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L I + LL +FG++K I+ ++PE L+ GI + +IY FH+ Sbjct: 319 ILTSIKSVNKTDVITLLSTFGSLKNIANATPEQLSRCPGIGEHKVRRIYEAFHQ 372 >gi|253996456|ref|YP_003048520.1| DNA ligase, NAD-dependent [Methylotenera mobilis JLW8] gi|253983135|gb|ACT47993.1| DNA ligase, NAD-dependent [Methylotenera mobilis JLW8] Length = 677 Score = 59.7 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 23/52 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G + L + FG + + +S E L + + +A I N F + + + Sbjct: 524 VGEATAKDLAKHFGNLNALMAASIEDLLEVNDVGPIVAESIKNFFSEEHNKS 575 Score = 39.3 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 13/78 (16%) Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLL----LQSFGTVKMISRSSPETLASIEGIS 596 AIT + RR +I G+G L L T+ + TL+++E ++ Sbjct: 443 AITHYASRRA-------MDIEGLGEKLVDQLVEANLVH--TLADVYSLDIHTLSNLERMA 493 Query: 597 KKIACKIYNHFHKNTSHT 614 +K A I + + + T Sbjct: 494 EKSAQNILDALNASKDTT 511 >gi|302348720|ref|YP_003816358.1| Putative ski2-type helicase [Acidilobus saccharovorans 345-15] gi|302329132|gb|ADL19327.1| Putative ski2-type helicase [Acidilobus saccharovorans 345-15] Length = 724 Score = 59.7 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHF-HKNTSH 613 L EI G+G +R R L + F T++ ++ +SP+ L I GI I F K + Sbjct: 648 QLVEIPGVGRVRARRLYNAGFKTLESLATASPQELLRIPGIGPATVASILEFFGRKEEAA 707 Query: 614 T 614 + Sbjct: 708 S 708 >gi|312863154|ref|ZP_07723392.1| DNA ligase (NAD+) [Streptococcus vestibularis F0396] gi|322516268|ref|ZP_08069198.1| NAD-dependent DNA ligase LigA [Streptococcus vestibularis ATCC 49124] gi|311100690|gb|EFQ58895.1| DNA ligase (NAD+) [Streptococcus vestibularis F0396] gi|322125241|gb|EFX96614.1| NAD-dependent DNA ligase LigA [Streptococcus vestibularis ATCC 49124] Length = 652 Score = 59.7 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 31/55 (56%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G + LL++FG+++ ++ + E +A+++G+ IA I +F K + Sbjct: 502 GIRHVGAKVSKQLLEAFGSIQELASADVEAIAAVDGLGDVIAKSIQRYFAKEEAQ 556 >gi|326927343|ref|XP_003209852.1| PREDICTED: Fanconi anemia-associated protein of 24 kDa-like [Meleagris gallopavo] Length = 215 Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +I G+G + LLLQ FG++ I +S + L I G +A +I+ Sbjct: 167 QIPGVGKTKALLLLQQFGSIHQICNASVKELELIVG--PTVAQQIHTFL 213 >gi|255526475|ref|ZP_05393386.1| DNA ligase, NAD-dependent [Clostridium carboxidivorans P7] gi|296184848|ref|ZP_06853259.1| DNA ligase, NAD-dependent [Clostridium carboxidivorans P7] gi|255509857|gb|EET86186.1| DNA ligase, NAD-dependent [Clostridium carboxidivorans P7] gi|296050630|gb|EFG90053.1| DNA ligase, NAD-dependent [Clostridium carboxidivorans P7] Length = 669 Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 28/52 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I IG L+++F ++ I +SS E L SI+ + + +A I F+++ Sbjct: 516 GIPNIGKKTATDLVKNFKSLDNIIQSSEEELVSIQDVGEIVAKSIIEFFNED 567 >gi|170761523|ref|YP_001788587.1| NAD-dependent DNA ligase LigA [Clostridium botulinum A3 str. Loch Maree] gi|254781295|sp|B1L1H3|DNLJ_CLOBM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|169408512|gb|ACA56923.1| DNA ligase, NAD-dependent [Clostridium botulinum A3 str. Loch Maree] Length = 664 Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 23/49 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G L+ F T++ I ++ E L + + + +A IY+ F Sbjct: 513 GIPNVGKKTANDLVMKFKTLESIKNTTIEQLVEVPDVGEIVAKSIYDFF 561 >gi|62185205|ref|YP_219990.1| NAD-dependent DNA ligase LigA [Chlamydophila abortus S26/3] gi|81312632|sp|Q5L5Q2|DNLJ_CHLAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|62148272|emb|CAH64037.1| putative DNA ligase [Chlamydophila abortus S26/3] Length = 660 Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 10/67 (14%) Query: 551 KAAYSPLD------EIN--GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 KA PLD I GIG L Q F +++ + +S + L +IEGI K+A Sbjct: 497 KAKSVPLDRFITALGIPYVGIGGA--NALAQHFLSLESVMAASLDDLKAIEGIGDKVAES 554 Query: 603 IYNHFHK 609 I +FH+ Sbjct: 555 IVAYFHQ 561 >gi|296126514|ref|YP_003633766.1| DNA ligase, NAD-dependent [Brachyspira murdochii DSM 12563] gi|296018330|gb|ADG71567.1| DNA ligase, NAD-dependent [Brachyspira murdochii DSM 12563] Length = 663 Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 25/48 (52%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +G LL + F +++ +++ E L +IEGI + A IY+ H Sbjct: 515 VGETTADLLAKYFTSIENFKKAAIEDLQNIEGIGEISAKSIYDFLHNE 562 >gi|254994841|ref|ZP_05277031.1| excinuclease ABC subunit C (uvrC) [Anaplasma marginale str. Mississippi] Length = 44 Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 24/43 (55%) Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 + FG++ + R+ + ++ + GIS K+A +IY + + + Sbjct: 2 ITYFGSIDGVKRARTDEISKVPGISIKLAQRIYAYLKQGMAQP 44 >gi|70606419|ref|YP_255289.1| XPF/RAD1 repair endonuclease [Sulfolobus acidocaldarius DSM 639] gi|68567067|gb|AAY79996.1| XPF/RAD1 repair endonuclease [Sulfolobus acidocaldarius DSM 639] Length = 236 Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 + + +G + LL+ F T++ I ++S L G S+K A +IY H Sbjct: 160 ESLPNVGEKLAKKLLEKFNTIENICKASISDLEKALG-SRKRAEEIYKVLH 209 >gi|83590843|ref|YP_430852.1| DNA ligase, NAD-dependent [Moorella thermoacetica ATCC 39073] gi|123739230|sp|Q2RGY0|DNLJ_MOOTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|83573757|gb|ABC20309.1| DNA ligase, NAD-dependent [Moorella thermoacetica ATCC 39073] Length = 666 Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 24/49 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G R+L FG++ ++ ++ E L ++ I +IA I F Sbjct: 514 GIRNVGQRAARVLADHFGSLDKLAAATVEELTALPDIGPRIAENIREFF 562 >gi|3258335|dbj|BAA31018.1| 90aa long hypothetical DNA excision repair protein [Pyrococcus horikoshii OT3] Length = 90 Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 29/109 (26%) Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556 +AK + E + +AL L R QR+ Sbjct: 1 MAKREQEERKREVRIRGEKKALTLAER-------QRM----------------------I 31 Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 ++ + + R LL+ FG+V+ + +S L +EGI +KIA +I Sbjct: 32 VESLPNVSTTLARRLLRHFGSVEKVFTASVPELMKVEGIGEKIAREIRR 80 >gi|331270357|ref|YP_004396849.1| DNA ligase [Clostridium botulinum BKT015925] gi|329126907|gb|AEB76852.1| DNA ligase, NAD-dependent [Clostridium botulinum BKT015925] Length = 663 Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G L + F T+K + ++ + L S+E I +A I F +T Sbjct: 513 GIPNVGKKTSTDLCKKFKTLKNLKSATFDDLISVEDIGDIVAESIMEFFKDDT 565 >gi|148652285|ref|YP_001279378.1| DNA ligase [Psychrobacter sp. PRwf-1] gi|190359276|sp|A5WCN7|DNLJ_PSYWF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|148571369|gb|ABQ93428.1| DNA ligase, NAD-dependent [Psychrobacter sp. PRwf-1] Length = 686 Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I G+G + L Q FG + + +S + L ++ + A IYN F Sbjct: 530 GIRGVGETTAQNLAQYFGDLPELMGASIDALEAVPDVGHITAELIYNFFRAE 581 >gi|212224218|ref|YP_002307454.1| Hef nuclease [Thermococcus onnurineus NA1] gi|212009175|gb|ACJ16557.1| helicase-associated endonuclease for fork-structured DNA [Thermococcus onnurineus NA1] Length = 789 Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 29/109 (26%) Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556 +AK + E + +AL L R QRL Sbjct: 700 MAKREQEERKKEVRLRSEKKALTLAER-------QRL----------------------I 730 Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 ++ + + + LL+ FG V+ + ++ E L +EGI K A +I Sbjct: 731 VEGLPNVSATLAKRLLKHFGNVERVFTATEEELQEVEGIGPKKAREIRK 779 >gi|220931596|ref|YP_002508504.1| DNA protecting protein DprA [Halothermothrix orenii H 168] gi|219992906|gb|ACL69509.1| DNA protecting protein DprA [Halothermothrix orenii H 168] Length = 409 Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 L ING+G LR + LL FG+ I ++S + L + GI+ K+A KI Sbjct: 39 ALTMINGLGILRIQNLLNYFGSASSIWQASEKELKQVNGIN-KLAEKI 85 >gi|299139723|ref|ZP_07032896.1| DNA ligase, NAD-dependent [Acidobacterium sp. MP5ACTX8] gi|298598347|gb|EFI54512.1| DNA ligase, NAD-dependent [Acidobacterium sp. MP5ACTX8] Length = 723 Score = 59.0 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 25/50 (50%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G LL + FG++ + ++S E L ++ + ++A I F + + Sbjct: 576 VGERTASLLAEHFGSLDDLMKASAEDLEAVNEVGPRVAQAIVEFFAEEKN 625 >gi|326317205|ref|YP_004234877.1| DNA ligase, NAD-dependent [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374041|gb|ADX46310.1| DNA ligase, NAD-dependent [Acidovorax avenae subsp. avenae ATCC 19860] Length = 732 Score = 59.0 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 6/63 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ ++ L I +G + L + FG + I +S E L + + +A I+ Sbjct: 564 KSKHTTLPRFLFGLGIRHVGEATAKDLARHFGGLDAIIGASVEQLLEVNDVGPIVAEAIH 623 Query: 605 NHF 607 F Sbjct: 624 TFF 626 >gi|229493359|ref|ZP_04387148.1| DNA ligase, NAD-dependent [Rhodococcus erythropolis SK121] gi|229319675|gb|EEN85507.1| DNA ligase, NAD-dependent [Rhodococcus erythropolis SK121] Length = 700 Score = 59.0 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG+++ I +S + LA+++G+ IA + F Sbjct: 534 SIRHVGPTAARALAGEFGSLQRIREASVDELAAVDGVGSTIAAAVVEWF 582 >gi|226305867|ref|YP_002765827.1| NAD(+)-dependent DNA ligase [Rhodococcus erythropolis PR4] gi|254781402|sp|C0ZXK3|DNLJ_RHOE4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|226184984|dbj|BAH33088.1| NAD(+)-dependent DNA ligase [Rhodococcus erythropolis PR4] Length = 700 Score = 59.0 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG+++ I +S + LA+++G+ IA + F Sbjct: 534 SIRHVGPTAARALAGEFGSLQRIREASVDELAAVDGVGSTIAAAVVEWF 582 >gi|294495366|ref|YP_003541859.1| ERCC4 domain protein [Methanohalophilus mahii DSM 5219] gi|292666365|gb|ADE36214.1| ERCC4 domain protein [Methanohalophilus mahii DSM 5219] Length = 754 Score = 59.0 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 25/46 (54%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 I +GP R LL+ FG+V+ + ++ E L ++ I K A +I Sbjct: 701 IPQLGPQAARNLLEHFGSVEAVMKACEEELREVKLIGPKTAARIRE 746 >gi|257066474|ref|YP_003152730.1| NAD-dependent DNA ligase LigA [Anaerococcus prevotii DSM 20548] gi|256798354|gb|ACV29009.1| DNA ligase, NAD-dependent [Anaerococcus prevotii DSM 20548] Length = 666 Score = 59.0 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 21/50 (42%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I +G R L F + + +S E L+ I+ I + A I +F Sbjct: 510 GIPNVGERTSRDLANKFKSFDALRHASLEELSDIDDIGEITAQNIIEYFR 559 >gi|227485017|ref|ZP_03915333.1| DNA ligase (NAD(+)) [Anaerococcus lactolyticus ATCC 51172] gi|227237014|gb|EEI87029.1| DNA ligase (NAD(+)) [Anaerococcus lactolyticus ATCC 51172] Length = 667 Score = 59.0 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 28/83 (33%), Gaps = 17/83 (20%) Query: 539 RFAITTHRKRRKKAAYSP-------LD------EINGIGPLRKRLLLQSFGTVKMISRSS 585 RF H K+ K S LD I +G R L F + + ++ Sbjct: 481 RF---GH-KKAKNLLASIDNSKNRDLDAFIYAIGIPNVGERTARDLANKFKSFDKLRNAT 536 Query: 586 PETLASIEGISKKIACKIYNHFH 608 + L I+ I + I FH Sbjct: 537 VDELIEIDDIGEITGENIVEFFH 559 >gi|240103224|ref|YP_002959533.1| Hef nuclease [Thermococcus gammatolerans EJ3] gi|239910778|gb|ACS33669.1| Hef, Helicase-associated endonuclease for fork-structured DNA (Hef) [Thermococcus gammatolerans EJ3] Length = 801 Score = 59.0 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 29/109 (26%) Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556 +AK + E + +AL L R QRL Sbjct: 711 LAKREQEERKKEVRLRSEKKALTLAER-------QRL----------------------I 741 Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 ++ + + + LL+ FG V+ + ++ E L +EGI +K A +I Sbjct: 742 VEGLPNVSSTLAKRLLRHFGNVEKVFTATEEELKEVEGIGEKKAREIRK 790 >gi|291390089|ref|XP_002711556.1| PREDICTED: hypothetical protein [Oryctolagus cuniculus] Length = 215 Score = 59.0 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 6/68 (8%) Query: 544 THRKRRKKAAYSPLD----EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 RK+R + + L +I G+G ++ LLLQ F T++ +S +S L + G + + Sbjct: 146 FLRKKRTQLSEPHLLRTVQQIPGVGKVKAPLLLQKFPTLQQLSNASIPELEPVVG--QAV 203 Query: 600 ACKIYNHF 607 A +I+ F Sbjct: 204 AQQIHAFF 211 >gi|330752433|emb|CBL87383.1| DNA ligase [uncultured Flavobacteria bacterium] Length = 663 Score = 59.0 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 27/50 (54%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G ++L + + TV +S +S E L +++ I KIA +Y F + S Sbjct: 514 VGETVAKILAKHYKTVHALSEASVEDLEAVDEIGIKIAKSVYAFFRNDVS 563 >gi|313201136|ref|YP_004039794.1| DNA ligase, nad-dependent [Methylovorus sp. MP688] gi|312440452|gb|ADQ84558.1| DNA ligase, NAD-dependent [Methylovorus sp. MP688] Length = 689 Score = 59.0 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 21/51 (41%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G + L + FG+++ + + E L + + +A I + Sbjct: 529 GIRNVGEATAKDLARYFGSLQALLAADIEQLQQVPDVGPIVAESIRQFLSE 579 Score = 40.1 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Query: 559 EINGIGPLRKRLLLQ--SFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +I G+G L+ T+ I R TL+S++ +++K A I + + + T Sbjct: 463 DIEGLGEKLVDQLVDGAHIHTLADIYRLDLATLSSLDRMAEKSAQNILDALQASKATT 520 >gi|253999028|ref|YP_003051091.1| DNA ligase, NAD-dependent [Methylovorus sp. SIP3-4] gi|253985707|gb|ACT50564.1| DNA ligase, NAD-dependent [Methylovorus sp. SIP3-4] Length = 699 Score = 59.0 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 21/51 (41%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G + L + FG+++ + + E L + + +A I + Sbjct: 539 GIRNVGEATAKDLARYFGSLQALLAADIEQLQQVPDVGPIVAESIRQFLSE 589 >gi|260655066|ref|ZP_05860554.1| DNA ligase, NAD-dependent [Jonquetella anthropi E3_33 E1] gi|260630177|gb|EEX48371.1| DNA ligase, NAD-dependent [Jonquetella anthropi E3_33 E1] Length = 670 Score = 59.0 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 29/56 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +GP R L+ FG+++ I +++ + L+ +EGI IA + + + + Sbjct: 510 GIPLVGPSAARALVGRFGSLEAIGQATEDELSKVEGIGPAIAGSVASWLADSANRA 565 >gi|145629080|ref|ZP_01784879.1| excinuclease ABC subunit C [Haemophilus influenzae 22.1-21] gi|144978583|gb|EDJ88306.1| excinuclease ABC subunit C [Haemophilus influenzae 22.1-21] Length = 79 Score = 59.0 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 14/26 (53%), Positives = 19/26 (73%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQK 33 PGVY+M D +V+YVGKA +L+K Sbjct: 47 HEPGVYRMYDDKDQVIYVGKAKDLKK 72 >gi|62859337|ref|NP_001016122.1| hypothetical protein LOC548876 [Xenopus (Silurana) tropicalis] Length = 215 Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +I G+G ++ LLQ F ++ +S +S L ++ G + IA I++ F Sbjct: 167 KIPGVGKVKALQLLQHFPSIHKLSNASVAQLETVVG--RTIALSIHSFF 213 >gi|86607132|ref|YP_475895.1| DNA protecting protein DprA [Synechococcus sp. JA-3-3Ab] gi|86555674|gb|ABD00632.1| DNA protecting protein DprA [Synechococcus sp. JA-3-3Ab] Length = 381 Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 25/45 (55%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 +I GIGP R + L + FG++K ++ L +EGI +A I Sbjct: 31 QIKGIGPHRLKRLAEFFGSLKQAWQADALDLQQVEGIGPTLAQAI 75 >gi|291277587|ref|YP_003517359.1| DNA polymerase I [Helicobacter mustelae 12198] gi|290964781|emb|CBG40637.1| DNA polymerase I [Helicobacter mustelae 12198] Length = 904 Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 8/58 (13%) Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 D + GI GP + L+ FG+++ I + E L + +SKKIA KI HK + Sbjct: 183 DNVPGIPSIGPKTAQKLIHHFGSLEEIY-ARTEELEGV--VSKKIASKILE--HKEEA 235 >gi|300779557|ref|ZP_07089415.1| NAD-dependent DNA ligase LigA [Chryseobacterium gleum ATCC 35910] gi|300505067|gb|EFK36207.1| NAD-dependent DNA ligase LigA [Chryseobacterium gleum ATCC 35910] Length = 667 Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 27/54 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G + L+++F T++ + ++ E L +E I KIA I + F + Sbjct: 512 GIKHVGETVAKKLVKNFPTIEELKNATIEELCQVEDIGTKIAVSIVDFFQNPEN 565 >gi|187932891|ref|YP_001884644.1| NAD-dependent DNA ligase LigA [Clostridium botulinum B str. Eklund 17B] gi|254781292|sp|B2TIZ7|DNLJ_CLOBB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|187721044|gb|ACD22265.1| DNA ligase, NAD-dependent [Clostridium botulinum B str. Eklund 17B] Length = 667 Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 8/52 (15%), Positives = 23/52 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +G + ++ F ++ + ++ E L S++ + +A + F + Sbjct: 513 GIPNVGVKTAKDIVNKFKSIDGLKNATFEELVSVQDVGDIVAQDVIEFFKEE 564 >gi|298675601|ref|YP_003727351.1| ERCC4 domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298288589|gb|ADI74555.1| ERCC4 domain protein [Methanohalobium evestigatum Z-7303] Length = 759 Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 26/46 (56%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 I+ IGP R LL+ FG+V+ I +++ E L E I K A KI Sbjct: 706 ISDIGPRAARSLLKYFGSVENIMKANYEELQEAELIGPKTASKIRE 751 >gi|237732406|ref|ZP_04562887.1| NAD-dependent DNA ligase LigA [Citrobacter sp. 30_2] gi|226907945|gb|EEH93863.1| NAD-dependent DNA ligase LigA [Citrobacter sp. 30_2] Length = 671 Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAHFGTLEALEAASIEELQKVPDVGIVVATHVFNFFAEESN 569 >gi|330903957|gb|EGH34529.1| excinuclease ABC subunit C [Pseudomonas syringae pv. japonica str. M301072PT] Length = 36 Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 15/36 (41%), Positives = 23/36 (63%) Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 FG ++ +SR+S + +A GISKK+A IY + H Sbjct: 1 FGGLQELSRASIDEIAKAPGISKKLAESIYANLHSE 36 >gi|168216777|ref|ZP_02642402.1| DNA ligase, NAD-dependent [Clostridium perfringens NCTC 8239] gi|182381157|gb|EDT78636.1| DNA ligase, NAD-dependent [Clostridium perfringens NCTC 8239] Length = 662 Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 25/52 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +G + L++ F +++ + ++ E L S++ + +A I F + Sbjct: 512 GIPNVGVKTAKDLVKRFESLENLENATFEELVSVQDVGDIVARSIIEFFKEE 563 >gi|166215590|sp|Q8XI62|DNLJ_CLOPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 662 Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 26/52 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +G + L++ F +++ + +++ E L S++ + +A I F + Sbjct: 512 GIPNVGVKTAKDLVKRFESLENLEKATFEELVSVQDVGDIVARSIIEFFKEE 563 >gi|110801053|ref|YP_696931.1| NAD-dependent DNA ligase LigA [Clostridium perfringens ATCC 13124] gi|123049624|sp|Q0TN59|DNLJ_CLOP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|110675700|gb|ABG84687.1| DNA ligase, NAD-dependent [Clostridium perfringens ATCC 13124] Length = 662 Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 26/52 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +G + L++ F +++ + +++ E L S++ + +A I F + Sbjct: 512 GIPNVGVKTAKDLVKRFESLENLEKATFEELVSVQDVGDIVARSIIEFFKEE 563 >gi|92112835|ref|YP_572763.1| DNA ligase, NAD-dependent [Chromohalobacter salexigens DSM 3043] gi|122990589|sp|Q1QZP4|DNLJ_CHRSD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|91795925|gb|ABE58064.1| DNA ligase, NAD-dependent [Chromohalobacter salexigens DSM 3043] Length = 691 Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 25/47 (53%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L + FG+++ +S +S E L ++E + +A I+ F + Sbjct: 525 VGEATAASLARHFGSLQALSEASLEALEAVEDVGPVVARHIHTFFRQ 571 >gi|323488236|ref|ZP_08093486.1| GIY-YIG catalytic domain protein [Planococcus donghaensis MPA1U2] gi|323398094|gb|EGA90890.1| GIY-YIG catalytic domain protein [Planococcus donghaensis MPA1U2] Length = 127 Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 3/87 (3%) Query: 1 MSSEQMP-ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIR 59 + +P + G+ Q + +G +L+VGKA L++R+K + + + ++ I Sbjct: 34 IDLHDIPRDKGGIIQFFNHSGELLFVGKARKLRQRVKKHFEDSVSPLKNHR--EEVYRIT 91 Query: 60 FTVTCTEVEALLLEANMIKRLKPRFNI 86 + +E + E +I K R+N+ Sbjct: 92 VSFVEDPMEREIYETYLINAHKARYNV 118 >gi|182625562|ref|ZP_02953333.1| DNA ligase, NAD-dependent [Clostridium perfringens D str. JGS1721] gi|177909250|gb|EDT71715.1| DNA ligase, NAD-dependent [Clostridium perfringens D str. JGS1721] Length = 662 Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 26/52 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +G + L++ F +++ + +++ E L S++ + +A I F + Sbjct: 512 GIPNVGVKTAKDLVKRFESLENLEKATFEELVSVQDVGDIVARSIIEFFKEE 563 >gi|168211265|ref|ZP_02636890.1| DNA ligase, NAD-dependent [Clostridium perfringens B str. ATCC 3626] gi|170710700|gb|EDT22882.1| DNA ligase, NAD-dependent [Clostridium perfringens B str. ATCC 3626] Length = 662 Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 26/52 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +G + L++ F +++ + +++ E L S++ + +A I F + Sbjct: 512 GIPNVGVKTAKDLVKRFESLENLEKATFEELVSVQDVGDIVARSIIEFFKEE 563 >gi|169347054|ref|ZP_02865996.1| DNA ligase, NAD-dependent [Clostridium perfringens C str. JGS1495] gi|169296737|gb|EDS78866.1| DNA ligase, NAD-dependent [Clostridium perfringens C str. JGS1495] Length = 662 Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 26/52 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +G + L++ F +++ + +++ E L S++ + +A I F + Sbjct: 512 GIPNVGVKTAKDLVKRFESLENLEKATFEELVSVQDVGDIVARSIIEFFKEE 563 >gi|18311241|ref|NP_563175.1| NAD-dependent DNA ligase LigA [Clostridium perfringens str. 13] gi|18145924|dbj|BAB81965.1| DNA ligase [Clostridium perfringens str. 13] Length = 665 Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 26/52 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +G + L++ F +++ + +++ E L S++ + +A I F + Sbjct: 515 GIPNVGVKTAKDLVKRFESLENLEKATFEELVSVQDVGDIVARSIIEFFKEE 566 >gi|206890890|ref|YP_002248891.1| DNA processing protein DprA [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742828|gb|ACI21885.1| DNA processing protein DprA [Thermodesulfovibrio yellowstonii DSM 11347] Length = 368 Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 28/51 (54%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 L+EI IGP+ + L FG K I ++ + LA +EGI + A +I N Sbjct: 11 ALNEIKDIGPVLLKRLFSRFGLAKQIFNATIDELAYVEGIGIEKAKRIKNF 61 >gi|168205087|ref|ZP_02631092.1| DNA ligase, NAD-dependent [Clostridium perfringens E str. JGS1987] gi|170663244|gb|EDT15927.1| DNA ligase, NAD-dependent [Clostridium perfringens E str. JGS1987] Length = 662 Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 26/52 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +G + L++ F +++ + +++ E L S++ + +A I F + Sbjct: 512 GIPNVGVKTAKDLVKRFESLENLEKATFEELVSVQDVGDIVARSIIEFFKEE 563 >gi|168213168|ref|ZP_02638793.1| DNA ligase, NAD-dependent [Clostridium perfringens CPE str. F4969] gi|170715278|gb|EDT27460.1| DNA ligase, NAD-dependent [Clostridium perfringens CPE str. F4969] Length = 662 Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 26/52 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +G + L++ F +++ + +++ E L S++ + +A I F + Sbjct: 512 GIPNVGVKTAKDLVKRFESLENLEKATFEELVSVQDVGDIVARSIIEFFKEE 563 >gi|313674932|ref|YP_004052928.1| DNA ligase, nad-dependent [Marivirga tractuosa DSM 4126] gi|312941630|gb|ADR20820.1| DNA ligase, NAD-dependent [Marivirga tractuosa DSM 4126] Length = 671 Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 23/50 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L F + ++++S + L + I ++IA + +FH + Sbjct: 519 VGKTVAEKLGAHFKNIDNLAKASFDELIEVPEIGERIAQSVVEYFHDEDN 568 >gi|332519658|ref|ZP_08396122.1| DNA ligase, NAD-dependent [Lacinutrix algicola 5H-3-7-4] gi|332044217|gb|EGI80411.1| DNA ligase, NAD-dependent [Lacinutrix algicola 5H-3-7-4] Length = 665 Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 25/50 (50%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + L + + +++ + ++S E L ++ I KIA + + F + Sbjct: 514 VGETVAKKLAKHYKSIEALEQASIEDLEKVDEIGIKIAESVVSFFASEEN 563 >gi|78485583|ref|YP_391508.1| DNA ligase, NAD-dependent [Thiomicrospira crunogena XCL-2] gi|123741582|sp|Q31G89|DNLJ_THICR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|78363869|gb|ABB41834.1| DNA ligase, NAD-dependent [Thiomicrospira crunogena XCL-2] Length = 672 Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 K YS I +G + + L F + I ++ E L ++ + + +A I N F + Sbjct: 509 AKFIYS--LGIPEVGEVTAKNLANHFKDLNAIKQAEFEELITLNDVGEVVAEHIVNFFKE 566 Query: 610 NTSHT 614 + + Sbjct: 567 PHNES 571 >gi|110803876|ref|YP_699521.1| NAD-dependent DNA ligase LigA [Clostridium perfringens SM101] gi|122956526|sp|Q0SQT6|DNLJ_CLOPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|110684377|gb|ABG87747.1| DNA ligase, NAD-dependent [Clostridium perfringens SM101] Length = 662 Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 26/52 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +G + L++ F +++ + +++ E L S++ + +A I F + Sbjct: 512 GIPNVGVKTAKDLVKRFESLENLEKATFEELVSVQDVGDIVARSIIEFFKEE 563 >gi|257052562|ref|YP_003130395.1| Hef nuclease [Halorhabdus utahensis DSM 12940] gi|256691325|gb|ACV11662.1| helicase domain protein [Halorhabdus utahensis DSM 12940] Length = 833 Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 27/47 (57%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 I +GP+ R LL+ FG+V+ + ++ + L ++G+ + A +I Sbjct: 779 SIADVGPVIARTLLEHFGSVQAVMTANEDDLLDVDGVGEVTAERIRE 825 >gi|303258051|ref|ZP_07344059.1| DNA ligase, NAD-dependent [Burkholderiales bacterium 1_1_47] gi|331000674|ref|ZP_08324326.1| DNA ligase [Parasutterella excrementihominis YIT 11859] gi|302859070|gb|EFL82153.1| DNA ligase, NAD-dependent [Burkholderiales bacterium 1_1_47] gi|329570827|gb|EGG52542.1| DNA ligase [Parasutterella excrementihominis YIT 11859] Length = 684 Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 6/67 (8%) Query: 552 AAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 + + L+ I +G R L FG +K + +S E L +E I A I + Sbjct: 512 SKKTTLERFLYAISIPEVGEATARNLASHFGALKPLEEASLEQLQEVEDIGPSGAENILH 571 Query: 606 HFHKNTS 612 F + + Sbjct: 572 FFAEPAN 578 >gi|86133336|ref|ZP_01051918.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152] gi|85820199|gb|EAQ41346.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152] Length = 359 Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 E++P GVY + D G+V+Y+GK N++ I + + R + + ++ F T Sbjct: 191 EEIPAVLGVYYIHDANGKVIYIGKGKNIKAEINNLFIKT--SRRSVRVQERATSVSFDKT 248 Query: 64 CTEV 67 E+ Sbjct: 249 GNEL 252 >gi|300866999|ref|ZP_07111669.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] gi|300334982|emb|CBN56835.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] Length = 291 Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 15/93 (16%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHR--ITHMISQINNIRFT 61 +++P+ PG+Y ++ ++ Y+G+A NL+KR + ++H ++ + +I I++ Sbjct: 19 DRLPDLPGIYFVVGEREQLFYIGQAKNLRKR---WAGKSHHRYKQFARKGLDKII-IKYI 74 Query: 62 VTC-TEV-EALLLEANMIKRLKPRFNILLRDDK 92 + +E+ E LE IK+ P LL D K Sbjct: 75 LASVSELNE---LECKYIKQFNP----LLNDGK 100 >gi|258517114|ref|YP_003193336.1| Mg chelatase, subunit ChlI [Desulfotomaculum acetoxidans DSM 771] gi|257780819|gb|ACV64713.1| Mg chelatase, subunit ChlI [Desulfotomaculum acetoxidans DSM 771] Length = 748 Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 29/47 (61%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 L ++ GIGP+ ++ LL+ FG+ + I +S L +I GI+ K KI Sbjct: 390 LSQVKGIGPILQKKLLEKFGSPESIYLASGMELMTIAGINNKTVEKI 436 >gi|119717662|ref|YP_924627.1| DNA ligase, NAD-dependent [Nocardioides sp. JS614] gi|166216220|sp|A1SMA5|DNLJ_NOCSJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|119538323|gb|ABL82940.1| DNA ligase, NAD-dependent [Nocardioides sp. JS614] Length = 752 Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 25/51 (49%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +GP R L FG++ I ++ E LA+ EG+ IA + F + Sbjct: 595 SIRHVGPKAGRALATEFGSMAAIRAATEEQLAAAEGVGPTIAEAVIEWFKE 645 >gi|53719773|ref|YP_108759.1| DNA ligase [Burkholderia pseudomallei K96243] gi|167816389|ref|ZP_02448069.1| DNA ligase [Burkholderia pseudomallei 91] gi|81379503|sp|Q63T07|DNLJ_BURPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|52210187|emb|CAH36166.1| DNA ligase [Burkholderia pseudomallei K96243] Length = 691 Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 9/85 (10%) Query: 539 RFAITTHRKR---RKKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 RFA + R +KA ++ L I +G + L + FG++ I + + L Sbjct: 504 RFAEKSARNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDAPIDAL 563 Query: 590 ASIEGISKKIACKIYNHFHKNTSHT 614 + + +A I+ F + + T Sbjct: 564 LEVNDVGPIVAESIHQFFAEEHNRT 588 >gi|126441747|ref|YP_001059474.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 668] gi|166215567|sp|A3NAV3|DNLJ_BURP6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|126221240|gb|ABN84746.1| DNA ligase (NAD(+)) [Burkholderia pseudomallei 668] Length = 691 Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 9/85 (10%) Query: 539 RFAITTHRKR---RKKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 RFA + R +KA ++ L I +G + L + FG++ I + + L Sbjct: 504 RFAEKSARNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDAPIDAL 563 Query: 590 ASIEGISKKIACKIYNHFHKNTSHT 614 + + +A I+ F + + T Sbjct: 564 LEVNDVGPIVAESIHQFFAEEHNRT 588 >gi|126453906|ref|YP_001066758.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106a] gi|134277579|ref|ZP_01764294.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 305] gi|167739178|ref|ZP_02411952.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 14] gi|167824768|ref|ZP_02456239.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 9] gi|167846299|ref|ZP_02471807.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei B7210] gi|167894881|ref|ZP_02482283.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 7894] gi|167903270|ref|ZP_02490475.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei NCTC 13177] gi|167919520|ref|ZP_02506611.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei BCC215] gi|217421846|ref|ZP_03453350.1| DNA ligase (NAD(+)) [Burkholderia pseudomallei 576] gi|226198948|ref|ZP_03794511.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pakistan 9] gi|237812814|ref|YP_002897265.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei MSHR346] gi|242317106|ref|ZP_04816122.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106b] gi|254179316|ref|ZP_04885915.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1655] gi|254198094|ref|ZP_04904516.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei S13] gi|166215566|sp|A3NWN7|DNLJ_BURP0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|126227548|gb|ABN91088.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106a] gi|134251229|gb|EBA51308.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 305] gi|169654835|gb|EDS87528.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei S13] gi|184209856|gb|EDU06899.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1655] gi|217395588|gb|EEC35606.1| DNA ligase (NAD(+)) [Burkholderia pseudomallei 576] gi|225929048|gb|EEH25072.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pakistan 9] gi|237506455|gb|ACQ98773.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei MSHR346] gi|242140345|gb|EES26747.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106b] Length = 691 Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 9/85 (10%) Query: 539 RFAITTHRKR---RKKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 RFA + R +KA ++ L I +G + L + FG++ I + + L Sbjct: 504 RFAEKSARNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDAPIDAL 563 Query: 590 ASIEGISKKIACKIYNHFHKNTSHT 614 + + +A I+ F + + T Sbjct: 564 LEVNDVGPIVAESIHQFFAEEHNRT 588 >gi|53723744|ref|YP_103200.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 23344] gi|67639492|ref|ZP_00438344.1| DNA ligase, NAD-dependent [Burkholderia mallei GB8 horse 4] gi|121600643|ref|YP_993378.1| DNA ligase, NAD-dependent [Burkholderia mallei SAVP1] gi|124385135|ref|YP_001029185.1| DNA ligase, NAD-dependent [Burkholderia mallei NCTC 10229] gi|126450807|ref|YP_001080885.1| DNA ligase, NAD-dependent [Burkholderia mallei NCTC 10247] gi|167004074|ref|ZP_02269848.1| DNA ligase, NAD-dependent [Burkholderia mallei PRL-20] gi|254178005|ref|ZP_04884660.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 10399] gi|254206491|ref|ZP_04912843.1| DNA ligase, NAD-dependent [Burkholderia mallei JHU] gi|254358100|ref|ZP_04974373.1| DNA ligase, NAD-dependent [Burkholderia mallei 2002721280] gi|81604820|sp|Q62JB9|DNLJ_BURMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166215563|sp|A3MKU9|DNLJ_BURM7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166215564|sp|A2SB66|DNLJ_BURM9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166215565|sp|A1V575|DNLJ_BURMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|52427167|gb|AAU47760.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 23344] gi|121229453|gb|ABM51971.1| DNA ligase, NAD-dependent [Burkholderia mallei SAVP1] gi|124293155|gb|ABN02424.1| DNA ligase (NAD(+)) [Burkholderia mallei NCTC 10229] gi|126243677|gb|ABO06770.1| DNA ligase (NAD(+)) [Burkholderia mallei NCTC 10247] gi|147753934|gb|EDK60999.1| DNA ligase, NAD-dependent [Burkholderia mallei JHU] gi|148027227|gb|EDK85248.1| DNA ligase, NAD-dependent [Burkholderia mallei 2002721280] gi|160699044|gb|EDP89014.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 10399] gi|238520039|gb|EEP83503.1| DNA ligase, NAD-dependent [Burkholderia mallei GB8 horse 4] gi|243060513|gb|EES42699.1| DNA ligase, NAD-dependent [Burkholderia mallei PRL-20] Length = 691 Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 9/85 (10%) Query: 539 RFAITTHRKR---RKKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 RFA + R +KA ++ L I +G + L + FG++ I + + L Sbjct: 504 RFAEKSARNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDAPIDAL 563 Query: 590 ASIEGISKKIACKIYNHFHKNTSHT 614 + + +A I+ F + + T Sbjct: 564 LEVNDVGPIVAESIHQFFAEEHNRT 588 >gi|150021387|ref|YP_001306741.1| DNA ligase, NAD-dependent [Thermosipho melanesiensis BI429] gi|190359297|sp|A6LN55|DNLJ_THEM4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|149793908|gb|ABR31356.1| DNA ligase, NAD-dependent [Thermosipho melanesiensis BI429] Length = 662 Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 6/68 (8%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ +PL I +G ++L + F ++ +S ++ + L IE I +IA I Sbjct: 497 KSKKTPLNRVIVGLGIPMVGEKTSKILAEKFKNIEKLSSATYDELIKIENIGPEIAKSIV 556 Query: 605 NHFHKNTS 612 +F + Sbjct: 557 TYFQNEKT 564 >gi|160902460|ref|YP_001568041.1| DNA ligase, NAD-dependent [Petrotoga mobilis SJ95] gi|190359269|sp|A9BJX5|DNLJ_PETMO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|160360104|gb|ABX31718.1| DNA ligase, NAD-dependent [Petrotoga mobilis SJ95] Length = 668 Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G + L F + + + + L IEGI + IA I F + Sbjct: 515 GIPNVGSKTAKDLANHFKNLDSLIDAKFDELVEIEGIGEDIANAIIKFFSQEE 567 >gi|329942957|ref|ZP_08291736.1| DNA ligase, NAD-dependent [Chlamydophila psittaci Cal10] gi|332287548|ref|YP_004422449.1| NAD-dependent DNA ligase [Chlamydophila psittaci 6BC] gi|313848123|emb|CBY17124.1| putative DNA ligase [Chlamydophila psittaci RD1] gi|325506604|gb|ADZ18242.1| NAD-dependent DNA ligase [Chlamydophila psittaci 6BC] gi|328815217|gb|EGF85206.1| DNA ligase, NAD-dependent [Chlamydophila psittaci Cal10] gi|328914798|gb|AEB55631.1| DNA ligase, NAD-dependent [Chlamydophila psittaci 6BC] Length = 660 Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 10/67 (14%) Query: 551 KAAYSPLD------EIN--GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 KA PLD I GIG L Q F +++ + +S + L S+EGI K+A Sbjct: 497 KAKSVPLDRFLTALGIPYVGIGGA--NALAQHFLSLESVMSASLDDLKSVEGIGDKVAES 554 Query: 603 IYNHFHK 609 I +F++ Sbjct: 555 IVAYFNQ 561 >gi|283779823|ref|YP_003370578.1| DNA ligase, NAD-dependent [Pirellula staleyi DSM 6068] gi|283438276|gb|ADB16718.1| DNA ligase, NAD-dependent [Pirellula staleyi DSM 6068] Length = 676 Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 4/69 (5%) Query: 550 KKAA-YSPLDE---INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 K+ S L I IG ++L + FGT+ I +++ E L+ + + + A +Y Sbjct: 504 SKSRPLSRLLNGLSIRHIGSNGSQVLARHFGTLDAIRQATLEDLSRVSEVGEITAASVYE 563 Query: 606 HFHKNTSHT 614 H + T Sbjct: 564 FLHSDYGKT 572 >gi|76801093|ref|YP_326101.1| NAD-dependent DNA ligase LigA [Natronomonas pharaonis DSM 2160] gi|121729348|sp|Q3ITK1|DNLJ_NATPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|76556958|emb|CAI48532.1| DNA ligase (NAD) [Natronomonas pharaonis DSM 2160] Length = 691 Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 A S L I G+G + + FGT+ + ++ E L +++GI + +I F + Sbjct: 529 AFLSAL-GIPGVGTTTAADIAREFGTLDAVMDATAEELRAVDGIGPTLGGEIAEFFDSDR 587 Query: 612 SHT 614 + Sbjct: 588 NQQ 590 >gi|325962711|ref|YP_004240617.1| DNA ligase, NAD-dependent [Arthrobacter phenanthrenivorans Sphe3] gi|323468798|gb|ADX72483.1| DNA ligase, NAD-dependent [Arthrobacter phenanthrenivorans Sphe3] Length = 767 Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 28/52 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +GP R L +FG++ I ++S E LA ++G+ IA + F ++ Sbjct: 583 SIRHVGPRASRALATAFGSMDAIRQASEEELAHVDGVGPTIAAALKEWFAED 634 >gi|254517673|ref|ZP_05129729.1| NAD-dependent DNA ligase LigA [Clostridium sp. 7_2_43FAA] gi|226911422|gb|EEH96623.1| NAD-dependent DNA ligase LigA [Clostridium sp. 7_2_43FAA] Length = 663 Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 25/54 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G + L+ F +++ + +S + L S++ + +A + F + + Sbjct: 511 GIPNVGVKTAKDLVNKFKSLEGLKSASFDDLVSVQDVGGIVAKCVLEFFKEEKA 564 >gi|319779225|ref|YP_004130138.1| DNA ligase [Taylorella equigenitalis MCE9] gi|317109249|gb|ADU91995.1| DNA ligase [Taylorella equigenitalis MCE9] Length = 681 Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 3/66 (4%) Query: 547 KRRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 + K S I +G R L + FG + I ++S E L S+ + + +A I Sbjct: 511 QASKSTTLSRFLFALGIRHVGETTARDLAKYFGDLYSIMQASTEELVSVPNVGEVMATSI 570 Query: 604 YNHFHK 609 + F++ Sbjct: 571 HTFFNE 576 >gi|291296053|ref|YP_003507451.1| DNA ligase NAD-dependent [Meiothermus ruber DSM 1279] gi|290471012|gb|ADD28431.1| DNA ligase, NAD-dependent [Meiothermus ruber DSM 1279] Length = 666 Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 23/49 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G R L + FG + I +++ E L ++ I++ A I+ Sbjct: 509 GIPQVGESTARALAKRFGHLDSILKATVEELDAVPDIAETTAQAIHQAL 557 >gi|149721939|ref|XP_001490071.1| PREDICTED: similar to Fanconi anemia-associated protein, 24 kDa [Equus caballus] Length = 215 Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 548 RRKKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 R+K+ S L +I G+G + LLLQ F +++ +S +S L + G +A Sbjct: 148 RKKRPLISELSLLRTVQQIPGVGKTKAVLLLQKFPSIQQLSNASVPDLEPVVG--PAVAQ 205 Query: 602 KIYNHFHKNT 611 ++ F +++ Sbjct: 206 HVHGFFTQSS 215 >gi|76810783|ref|YP_333980.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710b] gi|167720173|ref|ZP_02403409.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei DM98] gi|167911510|ref|ZP_02498601.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 112] gi|254189298|ref|ZP_04895809.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pasteur 52237] gi|254259109|ref|ZP_04950163.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710a] gi|254297202|ref|ZP_04964655.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 406e] gi|123771899|sp|Q3JR23|DNLJ_BURP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|76580236|gb|ABA49711.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710b] gi|157807762|gb|EDO84932.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 406e] gi|157936977|gb|EDO92647.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pasteur 52237] gi|254217798|gb|EET07182.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710a] Length = 691 Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 9/85 (10%) Query: 539 RFAITTHRKR---RKKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 RFA + R +KA ++ L I +G + L + FG++ I + + L Sbjct: 504 RFAEKSARNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMHAPIDAL 563 Query: 590 ASIEGISKKIACKIYNHFHKNTSHT 614 + + +A I+ F + + T Sbjct: 564 LEVNDVGPIVAESIHQFFAEEHNRT 588 >gi|331653837|ref|ZP_08354838.1| DNA ligase, NAD-dependent [Escherichia coli M718] gi|331048686|gb|EGI20762.1| DNA ligase, NAD-dependent [Escherichia coli M718] Length = 671 Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A +YN F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVYNFFAEESN 569 >gi|91772921|ref|YP_565613.1| Hef nuclease [Methanococcoides burtonii DSM 6242] gi|91711936|gb|ABE51863.1| Hef helicase [Methanococcoides burtonii DSM 6242] Length = 769 Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 25/49 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I+ IGP + LL FGTV+ + ++ + L ++ I K A K+ Sbjct: 715 SISNIGPNAAKNLLDHFGTVENVMKAELDELKEVKNIGPKTAGKMREIL 763 >gi|149433218|ref|XP_001520644.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus] Length = 211 Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 6/71 (8%) Query: 544 THRKRRKKAAYS-PLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 +K+R + + S L +I G+G ++ LL++ F T++ + +S + L + G + I Sbjct: 142 FLKKKRHQLSESAVLLTVQQIPGVGKVKALLLMKKFATLQRLCDASIQELEQVVG--QTI 199 Query: 600 ACKIYNHFHKN 610 A +++ ++ Sbjct: 200 AQQVHTFLTES 210 >gi|118594798|ref|ZP_01552145.1| DNA ligase, NAD-dependent [Methylophilales bacterium HTCC2181] gi|118440576|gb|EAV47203.1| DNA ligase, NAD-dependent [Methylophilales bacterium HTCC2181] Length = 671 Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 19/88 (21%) Query: 539 RFAITTHRKRRK--------KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRS 584 RFA K+ K+ + L I +G L + FG++ I + Sbjct: 487 RFA-----KKSAENLIESIEKSKKTTLGKFIYALGIRNVGEATAYDLAKQFGSIDKIMSA 541 Query: 585 SPETLASIEGISKKIACKIYNHFHKNTS 612 S E+L SI I +A I N+F+++T+ Sbjct: 542 SKESLLSIHDIGPTVATSIQNYFNEDTN 569 >gi|330817444|ref|YP_004361149.1| DNA ligase [Burkholderia gladioli BSR3] gi|327369837|gb|AEA61193.1| DNA ligase [Burkholderia gladioli BSR3] Length = 691 Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 6/70 (8%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA ++ L I +G + L + FG+++ I ++ E L + + +A ++ Sbjct: 520 KARHTTLGRFIYALGIRHVGESTAKDLAKHFGSLQPIMDATTEQLLEVNDVGPVVAESLH 579 Query: 605 NHFHKNTSHT 614 F + + T Sbjct: 580 QFFAEEHNRT 589 >gi|257054924|ref|YP_003132756.1| NAD-dependent DNA ligase LigA [Saccharomonospora viridis DSM 43017] gi|256584796|gb|ACU95929.1| DNA ligase, NAD-dependent [Saccharomonospora viridis DSM 43017] Length = 731 Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 25/49 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP + L + FG++ I +S E LA ++G+ IA + F Sbjct: 565 SIRHVGPTAAQALAREFGSIDAIDAASEERLAEVDGVGPTIAKAVREWF 613 >gi|291223953|ref|XP_002731972.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii] Length = 225 Score = 58.2 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G ++ R LL+ FG++K I+ +S E +A+I I + A + Sbjct: 174 IPKVGEVKARALLEKFGSIKGIATASTEEIANI--IGRANAEHVKMFL 219 >gi|21223850|ref|NP_629629.1| NAD-dependent DNA ligase LigA [Streptomyces coelicolor A3(2)] gi|7674017|sp|Q9Z585|DNLJ1_STRCO RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 1 gi|4467245|emb|CAB37570.1| putative DNA ligase [Streptomyces coelicolor A3(2)] Length = 735 Score = 57.8 bits (138), Expect = 5e-06, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 26/119 (21%) Query: 496 SIAKGPKRSAGMEKF--FVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA 553 + K G EK E + L +Q + +EA K R A Sbjct: 516 GLPKRD-PKTGEEKIATVFANKEG---EPKKNTLALLQHI-EEA---------KTRPLAR 561 Query: 554 YSPLDEING-----IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + ING +GP+ + L + F ++ I +++ E LAS +G+ IA + F Sbjct: 562 F-----INGLSIRYVGPVAAQALAREFRSIDRIEQATEEELASTDGVGGAIATAVKEWF 615 >gi|110666996|ref|YP_656807.1| Hef nuclease [Haloquadratum walsbyi DSM 16790] gi|109624743|emb|CAJ51150.1| probable nuclease domain protein/ probable ATP-dependent RNA helicase [Haloquadratum walsbyi DSM 16790] Length = 851 Score = 57.8 bits (138), Expect = 5e-06, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 4/68 (5%) Query: 542 ITTHRKRRKKAAYSPLD----EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 I+ H ++ K + I IGP+ + LL +FGTV+ + + + L +++G+ Sbjct: 777 ISVHGEKSAKTLQEQQEYVVSSIADIGPVTAQSLLDAFGTVEAVMTAGEDDLTAVDGVGA 836 Query: 598 KIACKIYN 605 A +I + Sbjct: 837 VTAARIRD 844 >gi|299529801|ref|ZP_07043234.1| DNA ligase, NAD-dependent [Comamonas testosteroni S44] gi|298722215|gb|EFI63139.1| DNA ligase, NAD-dependent [Comamonas testosteroni S44] Length = 708 Score = 57.8 bits (138), Expect = 5e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 6/63 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I +G R L + FG + I +S E L ++ + +A I+ Sbjct: 537 KSKSTTLQRFLFGLGIRNVGESTARDLAKHFGKLDAIMDASVEELLQVKDVGPVVADSIH 596 Query: 605 NHF 607 F Sbjct: 597 TFF 599 >gi|296132371|ref|YP_003639618.1| DNA ligase, NAD-dependent [Thermincola sp. JR] gi|296030949|gb|ADG81717.1| DNA ligase, NAD-dependent [Thermincola potens JR] Length = 665 Score = 57.8 bits (138), Expect = 5e-06, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 5/70 (7%) Query: 541 AITTHRKRRKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 AI R + +K S + I +G ++L FG++ + + E L +I I K Sbjct: 497 AIE--RSK-QKDLASLIFALGIRHVGARAGKILAAHFGSMDRLKEARQEELTAIPEIGPK 553 Query: 599 IACKIYNHFH 608 +A I +F Sbjct: 554 MAESIVAYFR 563 >gi|264678823|ref|YP_003278730.1| DNA ligase, NAD-dependent [Comamonas testosteroni CNB-2] gi|262209336|gb|ACY33434.1| DNA ligase, NAD-dependent [Comamonas testosteroni CNB-2] Length = 708 Score = 57.8 bits (138), Expect = 5e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 6/63 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I +G R L + FG + I +S E L ++ + +A I+ Sbjct: 537 KSKSTTLQRFLFGLGIRNVGESTARDLAKHFGKLDAIMDASVEELLQVKDVGPVVADSIH 596 Query: 605 NHF 607 F Sbjct: 597 TFF 599 >gi|221066629|ref|ZP_03542734.1| DNA ligase, NAD-dependent [Comamonas testosteroni KF-1] gi|220711652|gb|EED67020.1| DNA ligase, NAD-dependent [Comamonas testosteroni KF-1] Length = 708 Score = 57.8 bits (138), Expect = 5e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 6/63 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I +G R L + FG + I +S E L ++ + +A I+ Sbjct: 537 KSKSTTLQRFLFGLGIRNVGESTARDLAKHFGKLDAIMDASVEELLQVKDVGPVVADSIH 596 Query: 605 NHF 607 F Sbjct: 597 TFF 599 >gi|328552313|gb|AEB22805.1| NAD-dependent DNA ligase LigA [Bacillus amyloliquefaciens TA208] Length = 668 Score = 57.8 bits (138), Expect = 5e-06, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 6/66 (9%) Query: 550 KKAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 +K+ + L+ I IG + L F +++ + +++ E L +++ I +K+A + Sbjct: 496 QKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKQATEEELLAVDEIGEKMADAV 555 Query: 604 YNHFHK 609 +F K Sbjct: 556 ITYFRK 561 >gi|308172548|ref|YP_003919253.1| DNA ligase [Bacillus amyloliquefaciens DSM 7] gi|307605412|emb|CBI41783.1| DNA ligase [Bacillus amyloliquefaciens DSM 7] gi|328910657|gb|AEB62253.1| DNA ligase [Bacillus amyloliquefaciens LL3] Length = 669 Score = 57.8 bits (138), Expect = 5e-06, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 6/66 (9%) Query: 550 KKAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 +K+ + L+ I IG + L F +++ + +++ E L +++ I +K+A + Sbjct: 497 QKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKQATEEELLAVDEIGEKMADAV 556 Query: 604 YNHFHK 609 +F K Sbjct: 557 ITYFRK 562 >gi|196003470|ref|XP_002111602.1| hypothetical protein TRIADDRAFT_55800 [Trichoplax adhaerens] gi|190585501|gb|EDV25569.1| hypothetical protein TRIADDRAFT_55800 [Trichoplax adhaerens] Length = 211 Score = 57.8 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 10/72 (13%) Query: 544 THRK---RRK-----KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595 H K +RK +A S L + +G + RLLL F ++ IS +S E LA + G Sbjct: 142 YHNKFLVKRKPEPINQAVVSTLKLLPSVGETKARLLLNRFHSIAGISHASVEELAEVIGS 201 Query: 596 SKKIACKIYNHF 607 S +A + F Sbjct: 202 SSAVA--VKKAF 211 >gi|119490381|ref|ZP_01622859.1| hypothetical protein L8106_13805 [Lyngbya sp. PCC 8106] gi|119454040|gb|EAW35194.1| hypothetical protein L8106_13805 [Lyngbya sp. PCC 8106] Length = 290 Score = 57.8 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 7/82 (8%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRI--KSYMHSNNHTHRITHMISQINNIRFTVT 63 +P+ PG+Y ++D ++LY+G A NL+ R +S+ + + +I + + Sbjct: 19 LPDKPGIYFVIDEHNQILYIGLAKNLRSRWGGRSHHRYKQLARKG---LDKIY-LCYVEV 74 Query: 64 CTEVEALLLEANMIKRLKPRFN 85 E E LE I++LKP N Sbjct: 75 P-EPELKTLEKAYIEQLKPPLN 95 >gi|284166080|ref|YP_003404359.1| ERCC4 domain protein [Haloterrigena turkmenica DSM 5511] gi|284015735|gb|ADB61686.1| ERCC4 domain protein [Haloterrigena turkmenica DSM 5511] Length = 220 Score = 57.8 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 27/51 (52%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I GIGP L + + TV+ + +S E L IEGI ++ A I F ++ Sbjct: 166 IEGIGPELAATLYERYPTVESLLEASLEELTEIEGIGERRARTIDAAFRED 216 >gi|296104078|ref|YP_003614224.1| NAD-dependent DNA ligase LigA [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058537|gb|ADF63275.1| NAD-dependent DNA ligase LigA [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 671 Score = 57.8 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT+ + ++S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLDALEKASIEELQKVPDVGIVVATHVFNFFAEESN 569 >gi|258517150|ref|YP_003193372.1| DNA protecting protein DprA [Desulfotomaculum acetoxidans DSM 771] gi|257780855|gb|ACV64749.1| DNA protecting protein DprA [Desulfotomaculum acetoxidans DSM 771] Length = 368 Score = 57.8 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 28/47 (59%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 L ++ GIGP+ ++ LL FG+ + I +S L +I GI+ K KI Sbjct: 10 LTQLKGIGPILQKKLLDKFGSPESIYLASGTELMTIAGINNKTVEKI 56 >gi|149197252|ref|ZP_01874304.1| SMF family protein involved in DNA uptake [Lentisphaera araneosa HTCC2155] gi|149139798|gb|EDM28199.1| SMF family protein involved in DNA uptake [Lentisphaera araneosa HTCC2155] Length = 380 Score = 57.8 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 27/50 (54%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 L+ + G+GP L++ F + I ++S + L GI ++A +I NH Sbjct: 11 LNMLPGVGPRTYNKLVKKFKKSENIFKASRKELLKCPGIGPRVAEEILNH 60 >gi|328950509|ref|YP_004367844.1| DNA ligase [Marinithermus hydrothermalis DSM 14884] gi|328450833|gb|AEB11734.1| DNA ligase [Marinithermus hydrothermalis DSM 14884] Length = 676 Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 25/50 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I +G R L + FGT+ + ++PE L +E + + A +I+ H Sbjct: 514 GIPQVGEALARTLARRFGTLDRLLEATPEELLEVEDVGELTARRIHETLH 563 >gi|89900985|ref|YP_523456.1| DNA ligase [Rhodoferax ferrireducens T118] gi|123397178|sp|Q21WC8|DNLJ_RHOFD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|89345722|gb|ABD69925.1| DNA ligase, NAD-dependent [Rhodoferax ferrireducens T118] Length = 690 Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 6/63 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I +G + L + FG++ + +S E L + I +A + Sbjct: 521 KSKQTTLPRFLFGLGIRHVGEATAKELARHFGSLDAVMDASLEQLLQVNDIGPIVAQSLR 580 Query: 605 NHF 607 F Sbjct: 581 TFF 583 >gi|312278868|gb|ADQ63525.1| DNA ligase [Streptococcus thermophilus ND03] Length = 648 Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 32/55 (58%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G + LL+SFGT+K ++ + + +A+++G+ + IA I +F K + Sbjct: 498 GIRHVGAKVSKQLLESFGTIKELASADVQAIAAVDGLGEVIAKSIQRYFAKEEAQ 552 >gi|116628243|ref|YP_820862.1| NAD-dependent DNA ligase LigA [Streptococcus thermophilus LMD-9] gi|116101520|gb|ABJ66666.1| NAD-dependent DNA ligase [Streptococcus thermophilus LMD-9] Length = 648 Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 32/55 (58%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G + LL+SFGT+K ++ + + +A+++G+ + IA I +F K + Sbjct: 498 GIRHVGAKVSKQLLESFGTIKELASADVQAIAAVDGLGEVIAKSIQRYFAKEEAQ 552 >gi|166216285|sp|Q03JF6|DNLJ_STRTD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 652 Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 32/55 (58%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G + LL+SFGT+K ++ + + +A+++G+ + IA I +F K + Sbjct: 502 GIRHVGAKVSKQLLESFGTIKELASADVQAIAAVDGLGEVIAKSIQRYFAKEEAQ 556 >gi|55821530|ref|YP_139972.1| NAD-dependent DNA ligase LigA [Streptococcus thermophilus LMG 18311] gi|55823458|ref|YP_141899.1| NAD-dependent DNA ligase LigA [Streptococcus thermophilus CNRZ1066] gi|81559086|sp|Q5LYL9|DNLJ_STRT1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|81560280|sp|Q5M382|DNLJ_STRT2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|55737515|gb|AAV61157.1| DNA ligase [Streptococcus thermophilus LMG 18311] gi|55739443|gb|AAV63084.1| DNA ligase [Streptococcus thermophilus CNRZ1066] Length = 652 Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 32/55 (58%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G + LL+SFGT+K ++ + + +A+++G+ + IA I +F K + Sbjct: 502 GIRHVGAKVSKQLLESFGTIKELASADVQAIAAVDGLGEVIAKSIQRYFAKEEAQ 556 >gi|255535523|ref|YP_003095894.1| DNA ligase [Flavobacteriaceae bacterium 3519-10] gi|255341719|gb|ACU07832.1| DNA ligase [Flavobacteriaceae bacterium 3519-10] Length = 667 Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G + L+++F ++ + ++ L +E I KIA I F + Sbjct: 512 GIKHVGETVAKKLVKNFNSIDDLKNATAAELVQVEDIGLKIAESITEFFKNPEN 565 >gi|311747945|ref|ZP_07721730.1| DNA ligase, NAD-dependent [Algoriphagus sp. PR1] gi|126574918|gb|EAZ79276.1| DNA ligase, NAD-dependent [Algoriphagus sp. PR1] Length = 791 Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 25/50 (50%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 IG LL Q FG++ ++ +S E L I G+ + + I+ F + + Sbjct: 640 IGENTAALLAQHFGSIDKLNEASTEELLEINGVGETLVQSIHEFFSRQEN 689 >gi|308450080|ref|XP_003088175.1| hypothetical protein CRE_02776 [Caenorhabditis remanei] gi|308249279|gb|EFO93231.1| hypothetical protein CRE_02776 [Caenorhabditis remanei] Length = 1202 Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP+ R L FG++ I +S E L++++G+ IA + F Sbjct: 780 NIRHVGPVAARALADWFGSLDAIRAASVEELSAVDGVGGIIAESLLEWF 828 >gi|29840375|ref|NP_829481.1| NAD-dependent DNA ligase LigA [Chlamydophila caviae GPIC] gi|75539575|sp|Q822R2|DNLJ_CHLCV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|29834724|gb|AAP05359.1| DNA ligase [Chlamydophila caviae GPIC] Length = 662 Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 6/68 (8%) Query: 551 KAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA +PLD I +G L Q F ++ + +S E L SIEGI K+A I Sbjct: 497 KAKQAPLDRFIAALGIPYVGVRVASALAQHFLNLEAVMGASLEELKSIEGIGDKVAESIE 556 Query: 605 NHFHKNTS 612 +F++ + Sbjct: 557 AYFNQQDT 564 >gi|159036755|ref|YP_001536008.1| DNA ligase, NAD-dependent [Salinispora arenicola CNS-205] gi|190359280|sp|A8M5E3|DNLJ_SALAI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157915590|gb|ABV97017.1| DNA ligase, NAD-dependent [Salinispora arenicola CNS-205] Length = 710 Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP + L + F +++ I ++ E L++++G+ IA + F Sbjct: 545 SIRHVGPTAAQALARHFRSIEAIDQAGEEELSAVDGVGPTIAASVREWF 593 >gi|291613759|ref|YP_003523916.1| DNA ligase, NAD-dependent [Sideroxydans lithotrophicus ES-1] gi|291583871|gb|ADE11529.1| DNA ligase, NAD-dependent [Sideroxydans lithotrophicus ES-1] Length = 701 Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 6/63 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I +G + L + FG ++ I +++ E L ++ + +A I Sbjct: 530 KSKSTALNRFLFALGIRHVGESTAKDLARHFGKLEAIMQANVEQLLAVPDVGPVVAQSIV 589 Query: 605 NHF 607 + F Sbjct: 590 DFF 592 >gi|304440548|ref|ZP_07400435.1| NAD-dependent DNA ligase LigA [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371026|gb|EFM24645.1| NAD-dependent DNA ligase LigA [Peptoniphilus duerdenii ATCC BAA-1640] Length = 650 Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I+ +G R L F +++ + ++ E L SI+ + A +IY FH Sbjct: 500 GIHNVGIKAARDLADHFKSLEGLMNATEEELVSIDDVGPITAHEIYEFFHDE 551 >gi|149372321|ref|ZP_01891509.1| putative DNA ligase [unidentified eubacterium SCB49] gi|149354711|gb|EDM43274.1| putative DNA ligase [unidentified eubacterium SCB49] Length = 677 Score = 57.4 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 +G + L + F ++ + +S E L +++ I +IA + F T Sbjct: 514 VGETVAKKLAKHFKSIDALMEASFEQLIAVDEIGDRIAESVLAFFKIETQD 564 >gi|116669859|ref|YP_830792.1| DNA ligase, NAD-dependent [Arthrobacter sp. FB24] gi|166215392|sp|A0JUH2|DNLJ_ARTS2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116609968|gb|ABK02692.1| DNA ligase, NAD-dependent [Arthrobacter sp. FB24] Length = 790 Score = 57.4 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 27/52 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +GP R L +FG++ I +S E LA ++G+ IA + F ++ Sbjct: 605 SIRHVGPRASRALATAFGSMDAIREASEEELAHVDGVGPVIAAALKEWFAED 656 >gi|294340191|emb|CAZ88563.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Thiomonas sp. 3As] Length = 686 Score = 57.4 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 19/49 (38%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G + L + FG + I + E L + + +A I F Sbjct: 532 GIRHVGEATAKDLARHFGGLDAILDAPLEQLLEVPDVGPVVAQSIRTFF 580 >gi|256824829|ref|YP_003148789.1| DNA ligase, NAD-dependent [Kytococcus sedentarius DSM 20547] gi|256688222|gb|ACV06024.1| DNA ligase, NAD-dependent [Kytococcus sedentarius DSM 20547] Length = 770 Score = 57.4 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 25/49 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L F T++ I +S E LA++EG+ IA + F Sbjct: 592 SIRHVGPTAARALAGHFATMEAIRAASTEELAAVEGVGPTIAEAVTEWF 640 >gi|120600544|ref|YP_965118.1| helix-hairpin-helix DNA-binding motif-containing protein [Shewanella sp. W3-18-1] gi|120560637|gb|ABM26564.1| helix-hairpin-helix motif [Shewanella sp. W3-18-1] Length = 175 Score = 57.4 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 26/61 (42%) Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 KR+K L + + P LL F ++ I + E L +EGI K+ A KI Sbjct: 113 KRKKNQQLFILQSLPEVDPKLASRLLYHFKNIEAIFTAPEEALIRVEGIGKEKARKIREA 172 Query: 607 F 607 Sbjct: 173 L 173 >gi|292656668|ref|YP_003536565.1| 50S ribosomal protein L32.eR [Haloferax volcanii DS2] gi|291371315|gb|ADE03542.1| ribosomal protein L32.eR [Haloferax volcanii DS2] Length = 235 Score = 57.4 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 555 SPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605 + L++I+G+GP + L ++ F +V + +S LA ++GI +A +I Sbjct: 6 TELEDISGVGPSKADALREAGFESVDDVQAASQSELAEVDGIGNALAARIKA 57 >gi|195941083|ref|ZP_03086465.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. EC4024] Length = 504 Score = 57.4 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT+ + +++ + L + + +A +YN F + ++ Sbjct: 353 VGEATAAGLAAYFGTLDALEKATIDELQKVPDVGIVVATHVYNFFAEESN 402 >gi|256785054|ref|ZP_05523485.1| NAD-dependent DNA ligase LigA [Streptomyces lividans TK24] gi|289768947|ref|ZP_06528325.1| DNA ligase, NAD-dependent [Streptomyces lividans TK24] gi|289699146|gb|EFD66575.1| DNA ligase, NAD-dependent [Streptomyces lividans TK24] Length = 735 Score = 57.4 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 26/119 (21%) Query: 496 SIAKGPKRSAGMEKF--FVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA 553 + K G EK E + L +Q + +EA K R A Sbjct: 516 GLPKRD-PKTGEEKIATVFANKEG---EPKKNTLALLQHI-EEA---------KTRPLAR 561 Query: 554 YSPLDEING-----IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + ING +GP+ + L + F ++ I +++ E LAS +G+ IA + F Sbjct: 562 F-----INGLSIRYVGPVAAQALAREFRSIDRIEQATEEELASTDGVGGTIATAVKEWF 615 >gi|308273580|emb|CBX30182.1| Protein smf [uncultured Desulfobacterium sp.] Length = 373 Score = 57.4 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 28/51 (54%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 L + GIG + L++ F + + + +S L+SI+GIS+++A I Sbjct: 9 ALKSVPGIGNYLFKKLIKRFKSPEAVFEASCSELSSIDGISERLAGVIKKF 59 >gi|16332266|ref|NP_442994.1| hypothetical protein sll0441 [Synechocystis sp. PCC 6803] gi|1653896|dbj|BAA18806.1| sll0441 [Synechocystis sp. PCC 6803] Length = 460 Score = 57.4 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 28/97 (28%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN----HTHRITHM-------I 52 +++PE PG+Y +L+ + Y+G + NLQKR S+ ++ +I + + Sbjct: 378 DELPEQPGIYFVLNKDDAIQYIGMSVNLQKRWYSHHRQSDFDLIEDGKIAFITSLPKHYL 437 Query: 53 SQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLR 89 +I ++ +IK P+ NI L+ Sbjct: 438 QEIESV-----------------LIKSFVPKLNIKLK 457 >gi|148263373|ref|YP_001230079.1| DNA ligase, NAD-dependent [Geobacter uraniireducens Rf4] gi|190359259|sp|A5GA98|DNLJ_GEOUR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|146396873|gb|ABQ25506.1| DNA ligase, NAD-dependent [Geobacter uraniireducens Rf4] Length = 672 Score = 57.4 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 26/51 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G +LL +FG+++ + +S E L SI + ++A I FH Sbjct: 518 GIRHVGEHTAKLLANAFGSMENLEHASEEELLSIREVGPQVAQSIRTFFHN 568 >gi|260904918|ref|ZP_05913240.1| DNA ligase, NAD-dependent [Brevibacterium linens BL2] Length = 729 Score = 57.4 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 25/49 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L F T++ I + E L++++GI IA I + F Sbjct: 573 SIRHVGPTAARTLAAHFRTLEAIRAAELEELSAVDGIGSTIAASIRDWF 621 >gi|302392792|ref|YP_003828612.1| DNA ligase, NAD-dependent [Acetohalobium arabaticum DSM 5501] gi|302204869|gb|ADL13547.1| DNA ligase, NAD-dependent [Acetohalobium arabaticum DSM 5501] Length = 671 Score = 57.4 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 23/49 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + +G LL F +++ + + E L I GI + +A +I + F Sbjct: 518 GVPNVGTRTAELLADKFKSLERLMEADKEELVEINGIGEVVAEEIVDFF 566 >gi|11499053|ref|NP_070287.1| Hef nuclease [Archaeoglobus fulgidus DSM 4304] gi|2649107|gb|AAB89786.1| ATP-dependent RNA helicase, putative [Archaeoglobus fulgidus DSM 4304] Length = 741 Score = 57.4 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%) Query: 545 HRKRRKKAAYSPLD----EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 H + K+ + I+ +G + R LL F T++ I+ + E LA + + KKIA Sbjct: 660 HTAKTKRTLKDEQEYIVSAISNVGNVIARNLLDYFQTIENIATADEEELAKVPKVGKKIA 719 Query: 601 CKIYN 605 +I Sbjct: 720 KRIRR 724 >gi|145593768|ref|YP_001158065.1| DNA ligase, NAD-dependent [Salinispora tropica CNB-440] gi|190359283|sp|A4X487|DNLJ_SALTO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|145303105|gb|ABP53687.1| DNA ligase, NAD-dependent [Salinispora tropica CNB-440] Length = 711 Score = 57.4 bits (137), Expect = 8e-06, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP + L + F +V+ I ++ E L++++G+ IA + F Sbjct: 546 SIRHVGPTAAQALARHFRSVEAIDQAGEEELSAVDGVGPTIAASVREWF 594 >gi|260887264|ref|ZP_05898527.1| DNA ligase, NAD-dependent [Selenomonas sputigena ATCC 35185] gi|330838979|ref|YP_004413559.1| DNA ligase, NAD-dependent [Selenomonas sputigena ATCC 35185] gi|260863326|gb|EEX77826.1| DNA ligase, NAD-dependent [Selenomonas sputigena ATCC 35185] gi|329746743|gb|AEC00100.1| DNA ligase, NAD-dependent [Selenomonas sputigena ATCC 35185] Length = 669 Score = 57.4 bits (137), Expect = 8e-06, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 25/54 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I GIG L+Q F T++ + +S E + ++ + + I ++F + Sbjct: 516 GIPGIGKAAAAALMQHFKTLEALENASDEAILAVRDMGETSVAAIRSYFQNEGN 569 >gi|320173862|gb|EFW49042.1| DNA ligase [Shigella dysenteriae CDC 74-1112] Length = 671 Score = 57.4 bits (137), Expect = 8e-06, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT+K + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLKALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|319789848|ref|YP_004151481.1| DNA ligase, NAD-dependent [Thermovibrio ammonificans HB-1] gi|317114350|gb|ADU96840.1| DNA ligase, NAD-dependent [Thermovibrio ammonificans HB-1] Length = 723 Score = 57.4 bits (137), Expect = 8e-06, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 23/54 (42%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G +LL + F ++ + + LASI GI A I N F + Sbjct: 549 GIRHVGEKTAQLLAKRFKNIEELMNADFTELASIPGIGPITATSIQNFFKAEQN 602 >gi|303234054|ref|ZP_07320703.1| DNA ligase (NAD+) [Finegoldia magna BVS033A4] gi|302494979|gb|EFL54736.1| DNA ligase (NAD+) [Finegoldia magna BVS033A4] Length = 662 Score = 57.4 bits (137), Expect = 8e-06, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 21/53 (39%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I IG L Q + + + + E L IE I IA +I FH T Sbjct: 511 GIPEIGEKTSFELAQKYKSFDNLREAKFEELIQIEDIGNVIAEEIVEFFHDET 563 >gi|169824266|ref|YP_001691877.1| NAD-dependent DNA ligase LigA [Finegoldia magna ATCC 29328] gi|254781333|sp|B0RZW0|DNLJ_FINM2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|167831071|dbj|BAG07987.1| NAD-dependent DNA ligase [Finegoldia magna ATCC 29328] Length = 662 Score = 57.4 bits (137), Expect = 8e-06, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 21/53 (39%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I IG L Q + + + + E L IE I IA +I FH T Sbjct: 511 GIPEIGEKTSFELAQKYKSFDNLREAKFEELIQIEDIGNVIAEEIVEFFHDET 563 >gi|15791152|ref|NP_280976.1| Hef nuclease [Halobacterium sp. NRC-1] gi|169236908|ref|YP_001690108.1| Hef nuclease [Halobacterium salinarum R1] gi|10581766|gb|AAG20456.1| ATP-dependent RNA helicase homolog eIF-4A [Halobacterium sp. NRC-1] gi|167727974|emb|CAP14762.1| nuclease domain protein / probable ATP-dependent helicase [Halobacterium salinarum R1] Length = 784 Score = 57.0 bits (136), Expect = 8e-06, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 26/45 (57%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 I +GP+ R LL +FG+V+ + +S + L + +G+ A +I Sbjct: 729 SITDVGPVTARSLLDTFGSVEAVMTASEDELTAADGVGAVTAERI 773 >gi|261414540|ref|YP_003248223.1| DNA ligase, NAD-dependent [Fibrobacter succinogenes subsp. succinogenes S85] gi|261370996|gb|ACX73741.1| DNA ligase, NAD-dependent [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326001|gb|ADL25202.1| DNA ligase (NAD+) [Fibrobacter succinogenes subsp. succinogenes S85] Length = 715 Score = 57.0 bits (136), Expect = 8e-06, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 AI ++R + L I +G R + + F T++ I ++ E L ++ + ++I Sbjct: 509 AIQASKQRSLENLLHGL-GIRFVGRTSARNIAKHFRTLEKIRTATVEELQNVTDVGERIG 567 Query: 601 CKIYNHFH 608 +Y FH Sbjct: 568 KSVYEFFH 575 >gi|261366975|ref|ZP_05979858.1| DNA ligase, NAD-dependent [Subdoligranulum variabile DSM 15176] gi|282571093|gb|EFB76628.1| DNA ligase, NAD-dependent [Subdoligranulum variabile DSM 15176] Length = 661 Score = 57.0 bits (136), Expect = 8e-06, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 24/55 (43%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I IG LL + FG+++ I + E + ++G +A + F K + Sbjct: 509 GIRNIGDKAAALLAEHFGSMEAIRSAGVEQMCEVDGFGAVMAQSVREFFDKEGTS 563 >gi|313125011|ref|YP_004035275.1| ercc4-like helicase [Halogeometricum borinquense DSM 11551] gi|312291376|gb|ADQ65836.1| ERCC4-like helicase [Halogeometricum borinquense DSM 11551] Length = 843 Score = 57.0 bits (136), Expect = 8e-06, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 25/46 (54%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 I IGP+ R LL+ FGTV+ + + E L + GI A +I + Sbjct: 791 IADIGPVTARSLLEEFGTVEAVMTAREEDLLEVSGIGSVTAERIRD 836 >gi|295394422|ref|ZP_06804646.1| NAD-dependent DNA ligase LigA [Brevibacterium mcbrellneri ATCC 49030] gi|294972774|gb|EFG48625.1| NAD-dependent DNA ligase LigA [Brevibacterium mcbrellneri ATCC 49030] Length = 740 Score = 57.0 bits (136), Expect = 8e-06, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +GP R + F ++ + ++ E L +EG+ + IA + + F + Sbjct: 581 SIRHVGPTAARDIAAHFRSMDAVRNATVEDLLEVEGVGETIAQSVVDWFAEE 632 >gi|227542668|ref|ZP_03972717.1| NAD-dependent DNA ligase LigA [Corynebacterium glucuronolyticum ATCC 51866] gi|227181551|gb|EEI62523.1| NAD-dependent DNA ligase LigA [Corynebacterium glucuronolyticum ATCC 51866] Length = 679 Score = 57.0 bits (136), Expect = 8e-06, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 27/49 (55%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L + FG++ I +++ E LA+ EG+ IA I + F Sbjct: 520 SIRHVGPTAARALAREFGSMDAIRKATEEELAATEGVGGVIAASIVDWF 568 >gi|227488027|ref|ZP_03918343.1| NAD-dependent DNA ligase LigA [Corynebacterium glucuronolyticum ATCC 51867] gi|227091889|gb|EEI27201.1| NAD-dependent DNA ligase LigA [Corynebacterium glucuronolyticum ATCC 51867] Length = 679 Score = 57.0 bits (136), Expect = 8e-06, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 27/49 (55%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L + FG++ I +++ E LA+ EG+ IA I + F Sbjct: 520 SIRHVGPTAARALAREFGSMDAIRKATEEELAATEGVGGVIAASIVDWF 568 >gi|78223924|ref|YP_385671.1| NAD-dependent DNA ligase C4-type [Geobacter metallireducens GS-15] gi|123756373|sp|Q39S28|DNLJ_GEOMG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|78195179|gb|ABB32946.1| NAD-dependent DNA ligase C4-type [Geobacter metallireducens GS-15] Length = 671 Score = 57.0 bits (136), Expect = 8e-06, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 33/66 (50%) Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 K+R+ + + I +G +LL +FG++ ++R++ L SI I ++A I Sbjct: 506 KKRELSRFIFALGIRHVGEHTAKLLATAFGSIDNLARATEAELLSIREIGPQVAQSITTF 565 Query: 607 FHKNTS 612 FH + Sbjct: 566 FHNEGN 571 >gi|319941620|ref|ZP_08015944.1| DNA ligase [Sutterella wadsworthensis 3_1_45B] gi|319804850|gb|EFW01704.1| DNA ligase [Sutterella wadsworthensis 3_1_45B] Length = 745 Score = 57.0 bits (136), Expect = 8e-06, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 21/47 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L FGT+ I +S E L + + + +A IY F + Sbjct: 588 VGEATALGLANHFGTLSAIENASMEALTGVPDVGEVVAESIYAFFRE 634 >gi|108798849|ref|YP_639046.1| NAD-dependent DNA ligase LigA [Mycobacterium sp. MCS] gi|119867964|ref|YP_937916.1| NAD-dependent DNA ligase LigA [Mycobacterium sp. KMS] gi|126434449|ref|YP_001070140.1| NAD-dependent DNA ligase LigA [Mycobacterium sp. JLS] gi|123369452|sp|Q1BAU4|DNLJ_MYCSS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166216212|sp|A3PXM2|DNLJ_MYCSJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166216213|sp|A1UE68|DNLJ_MYCSK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|108769268|gb|ABG07990.1| DNA ligase, NAD-dependent [Mycobacterium sp. MCS] gi|119694053|gb|ABL91126.1| DNA ligase, NAD-dependent [Mycobacterium sp. KMS] gi|126234249|gb|ABN97649.1| DNA ligase, NAD-dependent [Mycobacterium sp. JLS] Length = 701 Score = 57.0 bits (136), Expect = 8e-06, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 25/49 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG++ I +S + LA++EG+ IA + F Sbjct: 542 SIRHVGPTAARALATEFGSLDAIIEASEDQLAAVEGVGPTIAAAVKEWF 590 >gi|302380539|ref|ZP_07269004.1| DNA ligase (NAD+) [Finegoldia magna ACS-171-V-Col3] gi|302311482|gb|EFK93498.1| DNA ligase (NAD+) [Finegoldia magna ACS-171-V-Col3] Length = 662 Score = 57.0 bits (136), Expect = 9e-06, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 21/53 (39%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I IG L Q + + + + E L IE I IA +I FH T Sbjct: 511 GIPEIGEKTSFELAQKYKSFDNLREAKFEELIQIEDIGNVIAEEIVEFFHDET 563 >gi|311744048|ref|ZP_07717854.1| NAD-dependent DNA ligase LigA [Aeromicrobium marinum DSM 15272] gi|311313178|gb|EFQ83089.1| NAD-dependent DNA ligase LigA [Aeromicrobium marinum DSM 15272] Length = 782 Score = 57.0 bits (136), Expect = 9e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 6/63 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA L I +GP+ R L Q FG+V+ I + + LA ++G+ IA + Sbjct: 606 KARTKELWRFLVALSIRHVGPVAARALAQHFGSVRAIEAAGEDELAVVDGVGPTIAGSVK 665 Query: 605 NHF 607 + Sbjct: 666 DWL 668 >gi|315230780|ref|YP_004071216.1| ATP-dependent RNA helicase [Thermococcus barophilus MP] gi|315183808|gb|ADT83993.1| ATP-dependent RNA helicase [Thermococcus barophilus MP] Length = 770 Score = 57.0 bits (136), Expect = 9e-06, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 29/109 (26%) Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556 IAK + E + +AL L R QRL Sbjct: 681 IAKREQEERKKEVAVRSEKKALTLADR-------QRL----------------------I 711 Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 ++ + + + LL+ FG+V+ + + L +EGI +KIA +I Sbjct: 712 VEGLPYVSATLAKRLLRHFGSVERVFTAKENELMEVEGIGEKIAREIRR 760 >gi|260598800|ref|YP_003211371.1| NAD-dependent DNA ligase LigA [Cronobacter turicensis z3032] gi|260217977|emb|CBA32625.1| DNA ligase [Cronobacter turicensis z3032] Length = 672 Score = 57.0 bits (136), Expect = 9e-06, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 24/52 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L FGT++ + +S + L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAHFGTLEALINASIDDLQKVPDVGIVVATHVFNFFEEESNRA 571 >gi|156933031|ref|YP_001436947.1| NAD-dependent DNA ligase LigA [Cronobacter sakazakii ATCC BAA-894] gi|166215403|sp|A7MKW4|DNLJ_ENTS8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|156531285|gb|ABU76111.1| hypothetical protein ESA_00834 [Cronobacter sakazakii ATCC BAA-894] Length = 672 Score = 57.0 bits (136), Expect = 9e-06, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 24/52 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L FGT++ + +S + L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAHFGTLEALINASIDDLQKVPDVGIVVATHVFNFFEEESNRA 571 >gi|229542656|ref|ZP_04431716.1| DNA ligase, NAD-dependent [Bacillus coagulans 36D1] gi|229327076|gb|EEN92751.1| DNA ligase, NAD-dependent [Bacillus coagulans 36D1] Length = 668 Score = 57.0 bits (136), Expect = 9e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 2/66 (3%) Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 +K + L I +G ++L F T++ +S+++ E L +I I +K+A I + Sbjct: 499 KKNSLEKLLFGLGIRHVGAKAAKILAAHFETMERLSKATREELEAIPDIGEKMADSIAAY 558 Query: 607 FHKNTS 612 F + Sbjct: 559 FENEEA 564 >gi|260892973|ref|YP_003239070.1| DNA ligase, NAD-dependent [Ammonifex degensii KC4] gi|260865114|gb|ACX52220.1| DNA ligase, NAD-dependent [Ammonifex degensii KC4] Length = 672 Score = 57.0 bits (136), Expect = 9e-06, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 26/51 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G +LL + FG++ +++++ E L I I KIA + F + Sbjct: 518 GIRHVGERAAKLLAEHFGSIDRLAQATEEELTEIPEIGPKIAASVRAFFAE 568 >gi|261340751|ref|ZP_05968609.1| DNA ligase, NAD-dependent [Enterobacter cancerogenus ATCC 35316] gi|288317173|gb|EFC56111.1| DNA ligase, NAD-dependent [Enterobacter cancerogenus ATCC 35316] Length = 671 Score = 57.0 bits (136), Expect = 9e-06, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 25/50 (50%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + ++S + L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEKASIDELQKVPDVGIVVATHVFNFFAEESN 569 >gi|254435383|ref|ZP_05048890.1| hypothetical protein NOC27_2446 [Nitrosococcus oceani AFC27] gi|207088494|gb|EDZ65766.1| hypothetical protein NOC27_2446 [Nitrosococcus oceani AFC27] Length = 105 Score = 57.0 bits (136), Expect = 9e-06, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 21/86 (24%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQK----RIKSY----------MHSNNHTHRITHMISQIN 56 G+Y L+ V+YVGKA +L+ RI SY + + ++ + Sbjct: 18 GIYAFLNEDSEVIYVGKA-SLRNSLGARISSYCGYGADRECRFYGEWRSPPRYVLVVAVP 76 Query: 57 NIRFTVTCTEVEALLLEANMIKRLKP 82 + T EA LE +I+ L+P Sbjct: 77 D------ETRFEAPALEEYLIRELQP 96 >gi|322418721|ref|YP_004197944.1| NAD-dependent DNA ligase [Geobacter sp. M18] gi|320125108|gb|ADW12668.1| DNA ligase, NAD-dependent [Geobacter sp. M18] Length = 668 Score = 57.0 bits (136), Expect = 9e-06, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 28/50 (56%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G +LL +FG+++ ++++S E L SI + ++A I + F + Sbjct: 522 VGEHTAKLLAGAFGSIENLAKASEEELTSIREVGPQVAASIVDFFKNEEN 571 >gi|220912112|ref|YP_002487421.1| DNA ligase, NAD-dependent [Arthrobacter chlorophenolicus A6] gi|254778146|sp|B8HFJ3|DNLJ1_ARTCA RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 1 gi|219858990|gb|ACL39332.1| DNA ligase, NAD-dependent [Arthrobacter chlorophenolicus A6] Length = 770 Score = 57.0 bits (136), Expect = 9e-06, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 28/52 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +GP R L Q+FGT+ I +S E LA ++G+ IA + F ++ Sbjct: 583 SIRHVGPRASRALAQAFGTMDGIRAASEEELAHVDGVGPTIAAALKEWFAED 634 >gi|284166979|ref|YP_003405258.1| ERCC4 domain protein [Haloterrigena turkmenica DSM 5511] gi|284016634|gb|ADB62585.1| ERCC4 domain protein [Haloterrigena turkmenica DSM 5511] Length = 820 Score = 57.0 bits (136), Expect = 9e-06, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 25/47 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 I IGP+ R LL+ FGTV+ + +S E L +G+ A +I Sbjct: 766 SIAEIGPVTARSLLEEFGTVEAVMIASEEELQDADGVGAVTAERIRE 812 >gi|294786747|ref|ZP_06752001.1| DNA ligase, NAD-dependent [Parascardovia denticolens F0305] gi|315226368|ref|ZP_07868156.1| DNA ligase [Parascardovia denticolens DSM 10105] gi|294485580|gb|EFG33214.1| DNA ligase, NAD-dependent [Parascardovia denticolens F0305] gi|315120500|gb|EFT83632.1| DNA ligase [Parascardovia denticolens DSM 10105] Length = 868 Score = 57.0 bits (136), Expect = 9e-06, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 29/56 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G RL+ + F T+ IS++S E L SI+ I +IA +Y F + + Sbjct: 680 SIRHVGAPTARLIAKHFKTLTAISQASEEELTSIDAIGDEIAKSVYQWFREAQDPS 735 >gi|297191909|ref|ZP_06909307.1| DNA ligase [Streptomyces pristinaespiralis ATCC 25486] gi|197721112|gb|EDY65020.1| DNA ligase [Streptomyces pristinaespiralis ATCC 25486] Length = 736 Score = 57.0 bits (136), Expect = 9e-06, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 28/52 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +GP+ L + F ++ I +++ E LA+++G+ IA + F ++ Sbjct: 568 SIRHVGPVAAEALAREFRSIDRIEQATEEELAAVDGVGPTIAAALKQWFEED 619 >gi|302874256|ref|YP_003842889.1| DNA ligase, NAD-dependent [Clostridium cellulovorans 743B] gi|307689480|ref|ZP_07631926.1| NAD-dependent DNA ligase LigA [Clostridium cellulovorans 743B] gi|302577113|gb|ADL51125.1| DNA ligase, NAD-dependent [Clostridium cellulovorans 743B] Length = 665 Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 25/49 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G + L ++ +++ I +++ E L +IE I + +A I F Sbjct: 514 GIPNVGKKTAKDLCKNLKSLEGIKKATYEDLLAIEDIGEIVAKCIIEFF 562 >gi|323705454|ref|ZP_08117029.1| DNA protecting protein DprA [Thermoanaerobacterium xylanolyticum LX-11] gi|323535356|gb|EGB25132.1| DNA protecting protein DprA [Thermoanaerobacterium xylanolyticum LX-11] Length = 362 Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 10/73 (13%) Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI-----ACKI 603 R K Y L ING+G + L+ FG + + +SS E + + + + A KI Sbjct: 3 RNKVFYVWLSSINGVGAKTFKKLVDYFGNAENVYKSSLEDIKQVVNNGRVLNSIIEAKKI 62 Query: 604 --YNH---FHKNT 611 Y + HK Sbjct: 63 EPYKYAERLHKEE 75 >gi|325479535|gb|EGC82631.1| DNA ligase (NAD+) [Anaerococcus prevotii ACS-065-V-Col13] Length = 669 Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 21/50 (42%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I +G R L F + + ++ E L +E I + A I +F+ Sbjct: 510 GIPNVGERTSRDLANKFKSFDRLRQAKEEELVDVEDIGEITAQNIIEYFN 559 >gi|283832193|ref|ZP_06351934.1| DNA ligase, NAD-dependent [Citrobacter youngae ATCC 29220] gi|291071830|gb|EFE09939.1| DNA ligase, NAD-dependent [Citrobacter youngae ATCC 29220] Length = 671 Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 23/50 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT+ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLDALEAASIEELQKVPDVGIVVATHVFNFFAEESN 569 >gi|303244918|ref|ZP_07331244.1| helicase domain protein [Methanothermococcus okinawensis IH1] gi|302484735|gb|EFL47673.1| helicase domain protein [Methanothermococcus okinawensis IH1] Length = 797 Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 R++ + ++ +GPL LL FGT++ I + E L +EGI + +A KI + Sbjct: 732 SLRERQRF-IVESFPDVGPLTAENLLMKFGTIENIVNAPEEELREVEGIGEIMAKKIKSV 790 Query: 607 F 607 Sbjct: 791 L 791 >gi|262203140|ref|YP_003274348.1| DNA ligase, NAD-dependent [Gordonia bronchialis DSM 43247] gi|262086487|gb|ACY22455.1| DNA ligase, NAD-dependent [Gordonia bronchialis DSM 43247] Length = 691 Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 25/49 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG++ I + E LA +EG+ +A I++ F Sbjct: 533 SIRHVGPTAARALATEFGSLNAIEDADVEQLAGVEGLGMTLAQSIHDWF 581 >gi|223937256|ref|ZP_03629162.1| DNA protecting protein DprA [bacterium Ellin514] gi|223894041|gb|EEF60496.1| DNA protecting protein DprA [bacterium Ellin514] Length = 105 Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 28/51 (54%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 L+ I+ +GP+R R LL+ FG I +S + L + GI ++ A I N Sbjct: 9 ALNMIDHVGPVRVRQLLEQFGNAPAILSASKQQLMRVRGIGEETAECIANW 59 >gi|120403104|ref|YP_952933.1| NAD-dependent DNA ligase LigA [Mycobacterium vanbaalenii PYR-1] gi|166216216|sp|A1T6X7|DNLJ_MYCVP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|119955922|gb|ABM12927.1| DNA ligase, NAD-dependent [Mycobacterium vanbaalenii PYR-1] Length = 707 Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG++ I +S E LA++EG+ IA + + F Sbjct: 548 SIRHVGPTAARALATEFGSLDAIVAASEEELAAVEGVGPTIAAAVTDWF 596 >gi|239833258|ref|ZP_04681586.1| Hypothetical protein OINT_2000012 [Ochrobactrum intermedium LMG 3301] gi|239821321|gb|EEQ92890.1| Hypothetical protein OINT_2000012 [Ochrobactrum intermedium LMG 3301] Length = 194 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGK-AYNLQKRIKSY 38 E +P+ GVY DI R +YVGK + N++ R+K + Sbjct: 105 DLETVPQASGVYVFYDITDRPVYVGKSSKNVRNRVKDH 142 >gi|212218835|ref|YP_002305622.1| NAD-dependent DNA ligase [Coxiella burnetii CbuK_Q154] gi|254781301|sp|B6J878|DNLJ_COXB1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|212013097|gb|ACJ20477.1| NAD-dependent DNA ligase [Coxiella burnetii CbuK_Q154] Length = 673 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 6/65 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I G+G R L + F + ++ ++S ETL I I +A I+ Sbjct: 508 KSKKTTLPRFLYALGIRGVGDTTARTLARHFHELDLLMKASIETLQEIRDIGPVVAENIH 567 Query: 605 NHFHK 609 FH+ Sbjct: 568 AFFHQ 572 >gi|229085845|ref|ZP_04218071.1| hypothetical protein bcere0022_24490 [Bacillus cereus Rock3-44] gi|228697441|gb|EEL50200.1| hypothetical protein bcere0022_24490 [Bacillus cereus Rock3-44] Length = 239 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 53/103 (51%), Gaps = 22/103 (21%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G+Y + D ++YVGKA++++ R+ ++ +S ++ I + N + + + + Sbjct: 48 GIYLIKDYNDNIIYVGKAFSIKSRVLAHFNSYSN---IKEYVHLFNKVAYLIEDS----- 99 Query: 71 LLEANMIK-----RLKPRFNILLRD-DKSFP-----YILITDK 102 LL+ ++++ + KP FN +D K FP YI T+K Sbjct: 100 LLKRSLLQITYMIKYKPVFN---KDVQKEFPELYTQYIKQTNK 139 >gi|165923886|ref|ZP_02219718.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 334] gi|165916671|gb|EDR35275.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 334] Length = 670 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 6/65 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I G+G R L + F + ++ ++S ETL I I +A I+ Sbjct: 505 KSKKTTLPRFLYALGIRGVGDTTARTLARHFHELDLLMKASIETLQEIRDIGPVVAENIH 564 Query: 605 NHFHK 609 FH+ Sbjct: 565 AFFHQ 569 >gi|153207803|ref|ZP_01946403.1| DNA ligase, NAD-dependent [Coxiella burnetii 'MSU Goat Q177'] gi|120576355|gb|EAX32979.1| DNA ligase, NAD-dependent [Coxiella burnetii 'MSU Goat Q177'] Length = 670 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 6/65 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I G+G R L + F + ++ ++S ETL I I +A I+ Sbjct: 505 KSKKTTLPRFLYALGIRGVGDTTARTLARHFHELDLLMKASIETLQEIRDIGPVVAENIH 564 Query: 605 NHFHK 609 FH+ Sbjct: 565 AFFHQ 569 >gi|333016518|gb|EGK35849.1| DNA ligase, NAD-dependent [Shigella flexneri K-304] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|333001543|gb|EGK21111.1| DNA ligase, NAD-dependent [Shigella flexneri VA-6] gi|333002206|gb|EGK21770.1| DNA ligase, NAD-dependent [Shigella flexneri K-272] gi|333016032|gb|EGK35364.1| DNA ligase, NAD-dependent [Shigella flexneri K-227] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|332766219|gb|EGJ96429.1| DNA ligase, NAD-dependent [Shigella flexneri 2930-71] Length = 647 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 496 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 545 >gi|332755049|gb|EGJ85414.1| DNA ligase, NAD-dependent [Shigella flexneri 4343-70] Length = 421 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 270 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 319 >gi|332092973|gb|EGI98039.1| DNA ligase, NAD-dependent [Shigella boydii 3594-74] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|332089820|gb|EGI94921.1| DNA ligase, NAD-dependent [Shigella dysenteriae 155-74] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|332088205|gb|EGI93327.1| DNA ligase, NAD-dependent [Shigella boydii 5216-82] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|330912204|gb|EGH40714.1| DNA ligase [Escherichia coli AA86] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|325496534|gb|EGC94393.1| NAD-dependent DNA ligase LigA [Escherichia fergusonii ECD227] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|324009590|gb|EGB78809.1| DNA ligase, NAD-dependent [Escherichia coli MS 57-2] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|323967844|gb|EGB63256.1| DNA ligase [Escherichia coli M863] gi|327252066|gb|EGE63738.1| DNA ligase, NAD-dependent [Escherichia coli STEC_7v] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|323188282|gb|EFZ73575.1| DNA ligase, NAD-dependent [Escherichia coli RN587/1] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|323170330|gb|EFZ55983.1| DNA ligase, NAD-dependent [Escherichia coli LT-68] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|320196260|gb|EFW70884.1| DNA ligase [Escherichia coli WV_060327] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|320185101|gb|EFW59881.1| DNA ligase [Shigella flexneri CDC 796-83] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|320180401|gb|EFW55332.1| DNA ligase [Shigella boydii ATCC 9905] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|331673883|ref|ZP_08374646.1| DNA ligase, NAD-dependent [Escherichia coli TA280] gi|331069156|gb|EGI40548.1| DNA ligase, NAD-dependent [Escherichia coli TA280] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|331663971|ref|ZP_08364881.1| DNA ligase, NAD-dependent [Escherichia coli TA143] gi|331059770|gb|EGI31747.1| DNA ligase, NAD-dependent [Escherichia coli TA143] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|331648073|ref|ZP_08349163.1| DNA ligase, NAD-dependent [Escherichia coli M605] gi|331042933|gb|EGI15073.1| DNA ligase, NAD-dependent [Escherichia coli M605] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|301648064|ref|ZP_07247828.1| DNA ligase, NAD-dependent [Escherichia coli MS 146-1] gi|307139053|ref|ZP_07498409.1| NAD-dependent DNA ligase LigA [Escherichia coli H736] gi|331643032|ref|ZP_08344167.1| DNA ligase, NAD-dependent [Escherichia coli H736] gi|301073835|gb|EFK88641.1| DNA ligase, NAD-dependent [Escherichia coli MS 146-1] gi|331039830|gb|EGI12050.1| DNA ligase, NAD-dependent [Escherichia coli H736] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|300940348|ref|ZP_07154941.1| DNA ligase, NAD-dependent [Escherichia coli MS 21-1] gi|300454839|gb|EFK18332.1| DNA ligase, NAD-dependent [Escherichia coli MS 21-1] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|300923365|ref|ZP_07139409.1| DNA ligase, NAD-dependent [Escherichia coli MS 182-1] gi|300420362|gb|EFK03673.1| DNA ligase, NAD-dependent [Escherichia coli MS 182-1] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|301022290|ref|ZP_07186186.1| DNA ligase, NAD-dependent [Escherichia coli MS 69-1] gi|300397609|gb|EFJ81147.1| DNA ligase, NAD-dependent [Escherichia coli MS 69-1] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|300897228|ref|ZP_07115672.1| DNA ligase, NAD-dependent [Escherichia coli MS 198-1] gi|300358986|gb|EFJ74856.1| DNA ligase, NAD-dependent [Escherichia coli MS 198-1] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|293410811|ref|ZP_06654387.1| DNA ligase [Escherichia coli B354] gi|291471279|gb|EFF13763.1| DNA ligase [Escherichia coli B354] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|293415682|ref|ZP_06658325.1| DNA ligase [Escherichia coli B185] gi|291433330|gb|EFF06309.1| DNA ligase [Escherichia coli B185] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|281179485|dbj|BAI55815.1| DNA ligase [Escherichia coli SE15] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|209764254|gb|ACI80439.1| DNA ligase [Escherichia coli] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|218705919|ref|YP_002413438.1| NAD-dependent DNA ligase LigA [Escherichia coli UMN026] gi|293405854|ref|ZP_06649846.1| DNA ligase [Escherichia coli FVEC1412] gi|298381604|ref|ZP_06991203.1| DNA ligase [Escherichia coli FVEC1302] gi|254781326|sp|B7N602|DNLJ_ECOLU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218433016|emb|CAR13911.1| DNA ligase, NAD(+)-dependent [Escherichia coli UMN026] gi|284922366|emb|CBG35453.1| DNA ligase [Escherichia coli 042] gi|291428062|gb|EFF01089.1| DNA ligase [Escherichia coli FVEC1412] gi|298279046|gb|EFI20560.1| DNA ligase [Escherichia coli FVEC1302] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|218690549|ref|YP_002398761.1| NAD-dependent DNA ligase LigA [Escherichia coli ED1a] gi|254781322|sp|B7MY64|DNLJ_ECO81 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218428113|emb|CAR09030.2| DNA ligase, NAD(+)-dependent [Escherichia coli ED1a] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|218700877|ref|YP_002408506.1| NAD-dependent DNA ligase LigA [Escherichia coli IAI39] gi|254781321|sp|B7NPU7|DNLJ_ECO7I RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218370863|emb|CAR18680.1| DNA ligase, NAD(+)-dependent [Escherichia coli IAI39] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|218548148|ref|YP_002381939.1| NAD-dependent DNA ligase LigA [Escherichia fergusonii ATCC 35469] gi|331684067|ref|ZP_08384663.1| DNA ligase, NAD-dependent [Escherichia coli H299] gi|254781331|sp|B7LL73|DNLJ_ESCF3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218355689|emb|CAQ88301.1| DNA ligase, NAD(+)-dependent [Escherichia fergusonii ATCC 35469] gi|315298233|gb|EFU57493.1| DNA ligase, NAD-dependent [Escherichia coli MS 16-3] gi|331079019|gb|EGI50221.1| DNA ligase, NAD-dependent [Escherichia coli H299] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|215487666|ref|YP_002330097.1| NAD-dependent DNA ligase LigA [Escherichia coli O127:H6 str. E2348/69] gi|312967700|ref|ZP_07781915.1| DNA ligase, NAD-dependent [Escherichia coli 2362-75] gi|254781317|sp|B7UGB2|DNLJ_ECO27 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|215265738|emb|CAS10145.1| DNA ligase, NAD(+)-dependent [Escherichia coli O127:H6 str. E2348/69] gi|312287897|gb|EFR15802.1| DNA ligase, NAD-dependent [Escherichia coli 2362-75] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|195938757|ref|ZP_03084139.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. EC4024] Length = 556 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 405 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 454 >gi|91211748|ref|YP_541734.1| NAD-dependent DNA ligase LigA [Escherichia coli UTI89] gi|117624619|ref|YP_853532.1| NAD-dependent DNA ligase LigA [Escherichia coli APEC O1] gi|218559359|ref|YP_002392272.1| NAD-dependent DNA ligase LigA [Escherichia coli S88] gi|237704934|ref|ZP_04535415.1| NAD-dependent DNA ligase LigA [Escherichia sp. 3_2_53FAA] gi|331658566|ref|ZP_08359510.1| DNA ligase, NAD-dependent [Escherichia coli TA206] gi|123084405|sp|Q1R8W1|DNLJ_ECOUT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166215402|sp|A1ADS8|DNLJ_ECOK1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781318|sp|B7MHR5|DNLJ_ECO45 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|91073322|gb|ABE08203.1| DNA ligase [Escherichia coli UTI89] gi|115513743|gb|ABJ01818.1| NAD-dependent DNA ligase LigA [Escherichia coli APEC O1] gi|218366128|emb|CAR03873.1| DNA ligase, NAD(+)-dependent [Escherichia coli S88] gi|226901300|gb|EEH87559.1| NAD-dependent DNA ligase LigA [Escherichia sp. 3_2_53FAA] gi|294491726|gb|ADE90482.1| DNA ligase, NAD-dependent [Escherichia coli IHE3034] gi|307626016|gb|ADN70320.1| NAD-dependent DNA ligase LigA [Escherichia coli UM146] gi|315288164|gb|EFU47564.1| DNA ligase, NAD-dependent [Escherichia coli MS 110-3] gi|323949546|gb|EGB45434.1| DNA ligase [Escherichia coli H252] gi|323955668|gb|EGB51426.1| DNA ligase [Escherichia coli H263] gi|331054231|gb|EGI26258.1| DNA ligase, NAD-dependent [Escherichia coli TA206] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|146615|gb|AAA24071.1| lig peptide [Escherichia coli] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|82544871|ref|YP_408818.1| NAD-dependent DNA ligase LigA [Shigella boydii Sb227] gi|123741957|sp|Q31Y68|DNLJ_SHIBS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|81246282|gb|ABB66990.1| DNA ligase [Shigella boydii Sb227] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|82777805|ref|YP_404154.1| NAD-dependent DNA ligase LigA [Shigella dysenteriae Sd197] gi|309784866|ref|ZP_07679499.1| DNA ligase, NAD-dependent [Shigella dysenteriae 1617] gi|123728534|sp|Q32DE2|DNLJ_SHIDS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|81241953|gb|ABB62663.1| DNA ligase [Shigella dysenteriae Sd197] gi|308927236|gb|EFP72710.1| DNA ligase, NAD-dependent [Shigella dysenteriae 1617] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|24113756|ref|NP_708266.1| NAD-dependent DNA ligase LigA [Shigella flexneri 2a str. 301] gi|30063805|ref|NP_837976.1| NAD-dependent DNA ligase LigA [Shigella flexneri 2a str. 2457T] gi|110806352|ref|YP_689872.1| NAD-dependent DNA ligase LigA [Shigella flexneri 5 str. 8401] gi|81723177|sp|Q83K81|DNLJ_SHIFL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|122366427|sp|Q0T298|DNLJ_SHIF8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|24052834|gb|AAN43973.1| DNA ligase [Shigella flexneri 2a str. 301] gi|30042060|gb|AAP17786.1| DNA ligase [Shigella flexneri 2a str. 2457T] gi|110615900|gb|ABF04567.1| DNA ligase [Shigella flexneri 5 str. 8401] gi|281601828|gb|ADA74812.1| DNA ligase, NAD-dependent [Shigella flexneri 2002017] gi|313650866|gb|EFS15266.1| DNA ligase, NAD-dependent [Shigella flexneri 2a str. 2457T] gi|332755453|gb|EGJ85817.1| DNA ligase, NAD-dependent [Shigella flexneri K-671] gi|332756263|gb|EGJ86614.1| DNA ligase, NAD-dependent [Shigella flexneri 2747-71] gi|333002064|gb|EGK21630.1| DNA ligase, NAD-dependent [Shigella flexneri K-218] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|26248787|ref|NP_754827.1| NAD-dependent DNA ligase LigA [Escherichia coli CFT073] gi|170680446|ref|YP_001744602.1| NAD-dependent DNA ligase LigA [Escherichia coli SMS-3-5] gi|227887457|ref|ZP_04005262.1| NAD-dependent DNA ligase LigA [Escherichia coli 83972] gi|300981618|ref|ZP_07175608.1| DNA ligase, NAD-dependent [Escherichia coli MS 45-1] gi|301046300|ref|ZP_07193464.1| DNA ligase, NAD-dependent [Escherichia coli MS 185-1] gi|81475373|sp|Q8FFC1|DNLJ_ECOL6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781328|sp|B1LMK5|DNLJ_ECOSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|26109193|gb|AAN81395.1|AE016764_77 DNA ligase [Escherichia coli CFT073] gi|170518164|gb|ACB16342.1| DNA ligase, NAD-dependent [Escherichia coli SMS-3-5] gi|227835807|gb|EEJ46273.1| NAD-dependent DNA ligase LigA [Escherichia coli 83972] gi|300301715|gb|EFJ58100.1| DNA ligase, NAD-dependent [Escherichia coli MS 185-1] gi|300408962|gb|EFJ92500.1| DNA ligase, NAD-dependent [Escherichia coli MS 45-1] gi|307554453|gb|ADN47228.1| DNA ligase [Escherichia coli ABU 83972] gi|315293473|gb|EFU52825.1| DNA ligase, NAD-dependent [Escherichia coli MS 153-1] gi|323977408|gb|EGB72494.1| DNA ligase [Escherichia coli TW10509] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|15802944|ref|NP_288973.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 EDL933] gi|12516784|gb|AAG57530.1|AE005471_7 DNA ligase [Escherichia coli O157:H7 str. EDL933] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|15832537|ref|NP_311310.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. Sakai] gi|168768500|ref|ZP_02793507.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4486] gi|168778374|ref|ZP_02803381.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4076] gi|208813694|ref|ZP_03255023.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4045] gi|208821178|ref|ZP_03261498.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4042] gi|209399429|ref|YP_002271890.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4115] gi|217326968|ref|ZP_03443051.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. TW14588] gi|254794365|ref|YP_003079202.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. TW14359] gi|261223146|ref|ZP_05937427.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str. FRIK2000] gi|261259301|ref|ZP_05951834.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str. FRIK966] gi|291283640|ref|YP_003500458.1| DNA ligase [Escherichia coli O55:H7 str. CB9615] gi|166215595|sp|Q8XBL5|DNLJ_ECO57 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781320|sp|B5YZV8|DNLJ_ECO5E RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|13362753|dbj|BAB36706.1| DNA ligase [Escherichia coli O157:H7 str. Sakai] gi|189003243|gb|EDU72229.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4076] gi|189362250|gb|EDU80669.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4486] gi|208734971|gb|EDZ83658.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4045] gi|208741301|gb|EDZ88983.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4042] gi|209160829|gb|ACI38262.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4115] gi|209764248|gb|ACI80436.1| DNA ligase [Escherichia coli] gi|209764250|gb|ACI80437.1| DNA ligase [Escherichia coli] gi|209764252|gb|ACI80438.1| DNA ligase [Escherichia coli] gi|209764256|gb|ACI80440.1| DNA ligase [Escherichia coli] gi|217319335|gb|EEC27760.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. TW14588] gi|254593765|gb|ACT73126.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str. TW14359] gi|290763513|gb|ADD57474.1| DNA ligase [Escherichia coli O55:H7 str. CB9615] gi|320188751|gb|EFW63410.1| DNA ligase [Escherichia coli O157:H7 str. EC1212] gi|320640925|gb|EFX10409.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. G5101] gi|320646206|gb|EFX15133.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H- str. 493-89] gi|320651712|gb|EFX20092.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H- str. H 2687] gi|320657097|gb|EFX24906.1| NAD-dependent DNA ligase LigA [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662857|gb|EFX30185.1| NAD-dependent DNA ligase LigA [Escherichia coli O55:H7 str. USDA 5905] gi|320667743|gb|EFX34654.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. LSU-61] gi|326340214|gb|EGD64018.1| DNA ligase [Escherichia coli O157:H7 str. 1125] gi|326344216|gb|EGD67977.1| DNA ligase [Escherichia coli O157:H7 str. 1044] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|110642595|ref|YP_670325.1| NAD-dependent DNA ligase LigA [Escherichia coli 536] gi|191174600|ref|ZP_03036093.1| DNA ligase, NAD-dependent [Escherichia coli F11] gi|300997757|ref|ZP_07181842.1| DNA ligase, NAD-dependent [Escherichia coli MS 200-1] gi|306814500|ref|ZP_07448662.1| NAD-dependent DNA ligase LigA [Escherichia coli NC101] gi|122958158|sp|Q0TF55|DNLJ_ECOL5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|110344187|gb|ABG70424.1| DNA ligase [Escherichia coli 536] gi|190905126|gb|EDV64772.1| DNA ligase, NAD-dependent [Escherichia coli F11] gi|222034142|emb|CAP76883.1| DNA ligase [Escherichia coli LF82] gi|300304141|gb|EFJ58661.1| DNA ligase, NAD-dependent [Escherichia coli MS 200-1] gi|305851894|gb|EFM52346.1| NAD-dependent DNA ligase LigA [Escherichia coli NC101] gi|312947007|gb|ADR27834.1| NAD-dependent DNA ligase LigA [Escherichia coli O83:H1 str. NRG 857C] gi|324011127|gb|EGB80346.1| DNA ligase, NAD-dependent [Escherichia coli MS 60-1] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|157161876|ref|YP_001459194.1| NAD-dependent DNA ligase LigA [Escherichia coli HS] gi|253772690|ref|YP_003035521.1| NAD-dependent DNA ligase LigA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162394|ref|YP_003045502.1| NAD-dependent DNA ligase LigA [Escherichia coli B str. REL606] gi|297517308|ref|ZP_06935694.1| NAD-dependent DNA ligase LigA [Escherichia coli OP50] gi|300928569|ref|ZP_07144093.1| DNA ligase, NAD-dependent [Escherichia coli MS 187-1] gi|190359254|sp|A8A2Q7|DNLJ_ECOHS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157067556|gb|ABV06811.1| DNA ligase, NAD-dependent [Escherichia coli HS] gi|242378018|emb|CAQ32789.1| DNA ligase [Escherichia coli BL21(DE3)] gi|253323734|gb|ACT28336.1| DNA ligase, NAD-dependent [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974295|gb|ACT39966.1| NAD-dependent DNA ligase LigA [Escherichia coli B str. REL606] gi|253978462|gb|ACT44132.1| NAD-dependent DNA ligase LigA [Escherichia coli BL21(DE3)] gi|300463441|gb|EFK26934.1| DNA ligase, NAD-dependent [Escherichia coli MS 187-1] gi|323961212|gb|EGB56824.1| DNA ligase [Escherichia coli H489] gi|323970900|gb|EGB66151.1| DNA ligase [Escherichia coli TA007] gi|332344237|gb|AEE57571.1| DNA ligase, NAD-dependent LigA [Escherichia coli UMNK88] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|157156100|ref|YP_001463741.1| NAD-dependent DNA ligase LigA [Escherichia coli E24377A] gi|193066723|ref|ZP_03047750.1| DNA ligase, NAD-dependent [Escherichia coli E22] gi|194430461|ref|ZP_03062941.1| DNA ligase, NAD-dependent [Escherichia coli B171] gi|209919893|ref|YP_002293977.1| NAD-dependent DNA ligase LigA [Escherichia coli SE11] gi|218554944|ref|YP_002387857.1| NAD-dependent DNA ligase LigA [Escherichia coli IAI1] gi|218696047|ref|YP_002403714.1| NAD-dependent DNA ligase LigA [Escherichia coli 55989] gi|256017438|ref|ZP_05431303.1| NAD-dependent DNA ligase LigA [Shigella sp. D9] gi|260845052|ref|YP_003222830.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O103:H2 str. 12009] gi|260856513|ref|YP_003230404.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O26:H11 str. 11368] gi|260869108|ref|YP_003235510.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O111:H- str. 11128] gi|293446772|ref|ZP_06663194.1| DNA ligase [Escherichia coli B088] gi|300817349|ref|ZP_07097566.1| DNA ligase, NAD-dependent [Escherichia coli MS 107-1] gi|300820921|ref|ZP_07101071.1| DNA ligase, NAD-dependent [Escherichia coli MS 119-7] gi|300903139|ref|ZP_07121073.1| DNA ligase, NAD-dependent [Escherichia coli MS 84-1] gi|300921341|ref|ZP_07137704.1| DNA ligase, NAD-dependent [Escherichia coli MS 115-1] gi|301306250|ref|ZP_07212323.1| DNA ligase, NAD-dependent [Escherichia coli MS 124-1] gi|301328910|ref|ZP_07221944.1| DNA ligase, NAD-dependent [Escherichia coli MS 78-1] gi|307312589|ref|ZP_07592222.1| DNA ligase, NAD-dependent [Escherichia coli W] gi|309794543|ref|ZP_07688966.1| DNA ligase, NAD-dependent [Escherichia coli MS 145-7] gi|331669152|ref|ZP_08370000.1| DNA ligase, NAD-dependent [Escherichia coli TA271] gi|331678399|ref|ZP_08379074.1| DNA ligase, NAD-dependent [Escherichia coli H591] gi|332278439|ref|ZP_08390852.1| NAD-dependent DNA ligase LigA [Shigella sp. D9] gi|190359253|sp|A7ZPL2|DNLJ_ECO24 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781319|sp|B7LCF6|DNLJ_ECO55 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781323|sp|B7M6S1|DNLJ_ECO8A RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781327|sp|B6I4Y8|DNLJ_ECOSE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157078130|gb|ABV17838.1| DNA ligase, NAD-dependent [Escherichia coli E24377A] gi|192925627|gb|EDV80294.1| DNA ligase, NAD-dependent [Escherichia coli E22] gi|194411494|gb|EDX27836.1| DNA ligase, NAD-dependent [Escherichia coli B171] gi|209913152|dbj|BAG78226.1| DNA ligase [Escherichia coli SE11] gi|218352779|emb|CAU98567.1| DNA ligase, NAD(+)-dependent [Escherichia coli 55989] gi|218361712|emb|CAQ99309.1| DNA ligase, NAD(+)-dependent [Escherichia coli IAI1] gi|257755162|dbj|BAI26664.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O26:H11 str. 11368] gi|257760199|dbj|BAI31696.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O103:H2 str. 12009] gi|257765464|dbj|BAI36959.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O111:H- str. 11128] gi|291323602|gb|EFE63030.1| DNA ligase [Escherichia coli B088] gi|300404835|gb|EFJ88373.1| DNA ligase, NAD-dependent [Escherichia coli MS 84-1] gi|300411729|gb|EFJ95039.1| DNA ligase, NAD-dependent [Escherichia coli MS 115-1] gi|300526674|gb|EFK47743.1| DNA ligase, NAD-dependent [Escherichia coli MS 119-7] gi|300529975|gb|EFK51037.1| DNA ligase, NAD-dependent [Escherichia coli MS 107-1] gi|300838493|gb|EFK66253.1| DNA ligase, NAD-dependent [Escherichia coli MS 124-1] gi|300844712|gb|EFK72472.1| DNA ligase, NAD-dependent [Escherichia coli MS 78-1] gi|306907512|gb|EFN38016.1| DNA ligase, NAD-dependent [Escherichia coli W] gi|308121999|gb|EFO59261.1| DNA ligase, NAD-dependent [Escherichia coli MS 145-7] gi|315061736|gb|ADT76063.1| DNA ligase, NAD(+)-dependent [Escherichia coli W] gi|315256427|gb|EFU36395.1| DNA ligase, NAD-dependent [Escherichia coli MS 85-1] gi|320199974|gb|EFW74563.1| DNA ligase [Escherichia coli EC4100B] gi|323156318|gb|EFZ42476.1| DNA ligase, NAD-dependent [Escherichia coli EPECa14] gi|323159458|gb|EFZ45441.1| DNA ligase, NAD-dependent [Escherichia coli E128010] gi|323177463|gb|EFZ63051.1| DNA ligase, NAD-dependent [Escherichia coli 1180] gi|323184284|gb|EFZ69660.1| DNA ligase, NAD-dependent [Escherichia coli 1357] gi|323377683|gb|ADX49951.1| DNA ligase, NAD-dependent [Escherichia coli KO11] gi|323944634|gb|EGB40701.1| DNA ligase [Escherichia coli H120] gi|324020175|gb|EGB89394.1| DNA ligase, NAD-dependent [Escherichia coli MS 117-3] gi|324118125|gb|EGC12023.1| DNA ligase [Escherichia coli E1167] gi|331064346|gb|EGI36257.1| DNA ligase, NAD-dependent [Escherichia coli TA271] gi|331074859|gb|EGI46179.1| DNA ligase, NAD-dependent [Escherichia coli H591] gi|332100791|gb|EGJ04137.1| NAD-dependent DNA ligase LigA [Shigella sp. D9] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|16130337|ref|NP_416906.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr. MG1655] gi|89109225|ref|AP_003005.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr. W3110] gi|170019306|ref|YP_001724260.1| NAD-dependent DNA ligase LigA [Escherichia coli ATCC 8739] gi|170082020|ref|YP_001731340.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr. DH10B] gi|188495579|ref|ZP_03002849.1| DNA ligase, NAD-dependent [Escherichia coli 53638] gi|238901574|ref|YP_002927370.1| DNA ligase, NAD(+)-dependent [Escherichia coli BW2952] gi|256021895|ref|ZP_05435760.1| NAD-dependent DNA ligase LigA [Escherichia sp. 4_1_40B] gi|300951893|ref|ZP_07165701.1| DNA ligase, NAD-dependent [Escherichia coli MS 116-1] gi|300957240|ref|ZP_07169472.1| DNA ligase, NAD-dependent [Escherichia coli MS 175-1] gi|301023745|ref|ZP_07187485.1| DNA ligase, NAD-dependent [Escherichia coli MS 196-1] gi|312973347|ref|ZP_07787519.1| DNA ligase, NAD-dependent [Escherichia coli 1827-70] gi|2506362|sp|P15042|DNLJ_ECOLI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781324|sp|B1XA82|DNLJ_ECODH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781325|sp|B1IX60|DNLJ_ECOLC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|149242732|pdb|2OWO|A Chain A, Last Stop On The Road To Repair: Structure Of E.Coli Dna Ligase Bound To Nicked Dna-Adenylate gi|146613|gb|AAA24070.1| DNA ligase (EC 6.5.1.2) [Escherichia coli] gi|1788750|gb|AAC75464.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr. MG1655] gi|85675396|dbj|BAA16282.2| DNA ligase, NAD(+)-dependent [Escherichia coli str. K12 substr. W3110] gi|169754234|gb|ACA76933.1| DNA ligase, NAD-dependent [Escherichia coli ATCC 8739] gi|169889855|gb|ACB03562.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr. DH10B] gi|188490778|gb|EDU65881.1| DNA ligase, NAD-dependent [Escherichia coli 53638] gi|238860822|gb|ACR62820.1| DNA ligase, NAD(+)-dependent [Escherichia coli BW2952] gi|260448502|gb|ACX38924.1| DNA ligase, NAD-dependent [Escherichia coli DH1] gi|299880716|gb|EFI88927.1| DNA ligase, NAD-dependent [Escherichia coli MS 196-1] gi|300315993|gb|EFJ65777.1| DNA ligase, NAD-dependent [Escherichia coli MS 175-1] gi|300448878|gb|EFK12498.1| DNA ligase, NAD-dependent [Escherichia coli MS 116-1] gi|309702699|emb|CBJ02028.1| DNA ligase [Escherichia coli ETEC H10407] gi|310331942|gb|EFP99177.1| DNA ligase, NAD-dependent [Escherichia coli 1827-70] gi|315137042|dbj|BAJ44201.1| NAD-dependent DNA ligase LigA [Escherichia coli DH1] gi|315615662|gb|EFU96294.1| DNA ligase, NAD-dependent [Escherichia coli 3431] gi|323936436|gb|EGB32725.1| DNA ligase [Escherichia coli E1520] gi|323941344|gb|EGB37529.1| DNA ligase [Escherichia coli E482] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|239994967|ref|ZP_04715491.1| DNA ligase, NAD-dependent [Alteromonas macleodii ATCC 27126] Length = 593 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 25/48 (52%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +G L F T++ I +S E L ++ + + +A I+N F+++ Sbjct: 441 VGEATAANLAAHFETLEAIREASLEALVEVQDVGEVVATHIFNFFNES 488 >gi|149174899|ref|ZP_01853523.1| DNA processing chain A [Planctomyces maris DSM 8797] gi|148846236|gb|EDL60575.1| DNA processing chain A [Planctomyces maris DSM 8797] Length = 376 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 27/48 (56%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 L+ I G+GP +R LL FG+ I + + L +++GI K+A I Sbjct: 17 QLNLIRGVGPRIRRTLLDQFGSPAQILNAPRQELLNVQGIGTKLADAI 64 >gi|152981161|ref|YP_001353755.1| DNA ligase (polydeoxyribonucleotide synthase) [Janthinobacterium sp. Marseille] gi|166215814|sp|A6SZQ8|DNLJ_JANMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|151281238|gb|ABR89648.1| DNA ligase (Polydeoxyribonucleotide synthase) [Janthinobacterium sp. Marseille] Length = 692 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 6/63 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I +G + L + FG ++ + ++S E L + I +A I Sbjct: 524 KSKSTTLARFIYALGIRHVGEATAKELARHFGNLEALLQASEEQLLEVADIGPVVAQSIR 583 Query: 605 NHF 607 + Sbjct: 584 SFL 586 >gi|297571016|ref|YP_003696790.1| DNA ligase, NAD-dependent [Arcanobacterium haemolyticum DSM 20595] gi|296931363|gb|ADH92171.1| DNA ligase, NAD-dependent [Arcanobacterium haemolyticum DSM 20595] Length = 843 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 17/78 (21%) Query: 550 KKAAYSPLDEING-----------------IGPLRKRLLLQSFGTVKMISRSSPETLASI 592 K LDE+ G +GP+ + L +FG++ + +S E ++++ Sbjct: 660 SKTLLKILDELEGAKHKDLWRKLVALNIRHVGPVASQALADTFGSLDAMREASLEDISAV 719 Query: 593 EGISKKIACKIYNHFHKN 610 EG+ IA F + Sbjct: 720 EGVGPIIASSFLAWFGEE 737 >gi|258514074|ref|YP_003190296.1| DNA ligase, NAD-dependent [Desulfotomaculum acetoxidans DSM 771] gi|257777779|gb|ACV61673.1| DNA ligase, NAD-dependent [Desulfotomaculum acetoxidans DSM 771] Length = 677 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 3/68 (4%) Query: 548 RRKKAAYSPL---DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 + KKA+ L I +G + L + FG+++ + + E L I I KIA I Sbjct: 499 QSKKASLGRLIFALGIRHVGERAAKTLARHFGSLQNLMAAGLEELVGIPEIGTKIAGSII 558 Query: 605 NHFHKNTS 612 F + + Sbjct: 559 TFFEQEQN 566 >gi|121533514|ref|ZP_01665342.1| DNA ligase, NAD-dependent [Thermosinus carboxydivorans Nor1] gi|121308073|gb|EAX48987.1| DNA ligase, NAD-dependent [Thermosinus carboxydivorans Nor1] Length = 673 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 25/45 (55%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G L + FG++ + R++ E L ++E I KIA + N+F Sbjct: 525 VGAKAAGTLARHFGSIHALERATVEELMALEEIGPKIAESVANYF 569 >gi|134045229|ref|YP_001096715.1| Hef nuclease [Methanococcus maripaludis C5] gi|132662854|gb|ABO34500.1| ERCC4 domain protein [Methanococcus maripaludis C5] Length = 749 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%) Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 K R+K + + +GP+ LL +F +V+ I ++ E L ++EG+ A KI Sbjct: 686 KERQKFLV---EGLPDVGPVMAENLLDNFNSVENIFTATEEELKAVEGMGPVTAKKIKE 741 >gi|222152820|ref|YP_002561997.1| NAD-dependent DNA ligase LigA [Streptococcus uberis 0140J] gi|254781430|sp|B9DRS2|DNLJ_STRU0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|222113633|emb|CAR41520.1| DNA ligase [Streptococcus uberis 0140J] Length = 652 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 33/56 (58%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G RLLL++FG+V+ + ++ +++A I+G+ IA I N+F K + Sbjct: 502 GIRHVGAKASRLLLETFGSVENLMKADDQSIAQIDGLGHVIANSIKNYFAKEEAKQ 557 Score = 38.9 bits (89), Expect = 2.3, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 6/60 (10%) Query: 559 EINGIGPLRKRLL----LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I G+GP L L V I + S ++L ++EGI +K A K+ + + S++ Sbjct: 436 NIAGLGPAIVEKLFSAQLIH--DVADIYQLSLDSLLTLEGIKEKSAQKLLDAIQSSKSNS 493 >gi|313904335|ref|ZP_07837713.1| DNA ligase, NAD-dependent [Eubacterium cellulosolvens 6] gi|313470885|gb|EFR66209.1| DNA ligase, NAD-dependent [Eubacterium cellulosolvens 6] Length = 670 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 AI +K+ + L I +G + L++ + +++ +S+++ E L + I A Sbjct: 501 AIDASKKQNPARLLTAL-GIRNVGSSTAKELMKHYASIRELSKATAEELVQLPDIGSTTA 559 Query: 601 CKIYNHFHKNTS 612 I F + + Sbjct: 560 GDIVEFFSDSEN 571 >gi|293391716|ref|ZP_06636050.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952250|gb|EFE02369.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans D7S-1] Length = 671 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 22/47 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L F T++ + + E L + + + +A +I+ +H+ Sbjct: 522 VGEATALNLANHFKTLEALQNADLEQLQQVPDVGEVVANRIFVFWHE 568 >gi|289178474|gb|ADC85720.1| NAD-dependent DNA ligase [Bifidobacterium animalis subsp. lactis BB-12] Length = 889 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 6/65 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA ++ L I +GP L + F T+ ++ +S E L I+GI +IA I Sbjct: 715 KAKHTDLSRVLVALSIRHVGPPTAFTLAKHFKTLDALADASAEELEQIDGIGAEIADSIA 774 Query: 605 NHFHK 609 F + Sbjct: 775 TFFEE 779 >gi|183601766|ref|ZP_02963136.1| LigA [Bifidobacterium animalis subsp. lactis HN019] gi|219683704|ref|YP_002470087.1| DNA ligase, NAD-dependent [Bifidobacterium animalis subsp. lactis AD011] gi|241190736|ref|YP_002968130.1| LigA [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196142|ref|YP_002969697.1| LigA [Bifidobacterium animalis subsp. lactis DSM 10140] gi|254781258|sp|B8DU32|DNLJ_BIFA0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|183219372|gb|EDT90013.1| LigA [Bifidobacterium animalis subsp. lactis HN019] gi|219621354|gb|ACL29511.1| DNA ligase, NAD-dependent [Bifidobacterium animalis subsp. lactis AD011] gi|240249128|gb|ACS46068.1| LigA [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250696|gb|ACS47635.1| LigA [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793725|gb|ADG33260.1| LigA [Bifidobacterium animalis subsp. lactis V9] Length = 863 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 6/65 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA ++ L I +GP L + F T+ ++ +S E L I+GI +IA I Sbjct: 689 KAKHTDLSRVLVALSIRHVGPPTAFTLAKHFKTLDALADASAEELEQIDGIGAEIADSIA 748 Query: 605 NHFHK 609 F + Sbjct: 749 TFFEE 753 >gi|300783591|ref|YP_003763882.1| DNA ligase (NAD+) [Amycolatopsis mediterranei U32] gi|299793105|gb|ADJ43480.1| DNA ligase (NAD+) [Amycolatopsis mediterranei U32] Length = 726 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 27/49 (55%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP + L + FG+++ I +++ E L++++G+ IA F Sbjct: 548 SIRHVGPTAAQALAREFGSIERIEQATEEELSAVDGVGPTIAHATQEWF 596 >gi|225181787|ref|ZP_03735225.1| DNA ligase, NAD-dependent [Dethiobacter alkaliphilus AHT 1] gi|225167561|gb|EEG76374.1| DNA ligase, NAD-dependent [Dethiobacter alkaliphilus AHT 1] Length = 667 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 25/45 (55%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G RLL++ F +++ + +S E L +++ + KIA + F Sbjct: 518 VGDRTARLLVEHFNSMEKLMAASAEELEAVDEVGPKIAQSVTEFF 562 >gi|88855225|ref|ZP_01129890.1| DNA ligase [marine actinobacterium PHSC20C1] gi|88815753|gb|EAR25610.1| DNA ligase [marine actinobacterium PHSC20C1] Length = 775 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 27/49 (55%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP+ R L FG+++ I + E LA+++G+ + IA + F Sbjct: 610 SIRHVGPVAARALADYFGSLEAIRTAKREELAAVDGVGQIIADSVIEWF 658 >gi|88703478|ref|ZP_01101194.1| DNA ligase [Congregibacter litoralis KT71] gi|88702192|gb|EAQ99295.1| DNA ligase [Congregibacter litoralis KT71] Length = 674 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 22/50 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ +S + + L + + +A ++ F + + Sbjct: 522 VGEATALALANHFGTLEALSGADLDDLLEVPDVGPVVAEHVHGFFRADAN 571 >gi|149173204|ref|ZP_01851835.1| DNA ligase [Planctomyces maris DSM 8797] gi|148848010|gb|EDL62342.1| DNA ligase [Planctomyces maris DSM 8797] Length = 671 Score = 56.3 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 29/52 (55%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +G R+L + FGT+ I++ S E LA+++ I IA +Y FH + Sbjct: 514 NIRHVGSSNARILEKQFGTIDEIAQQSVEELAAVDEIGPVIAESVYTFFHSD 565 >gi|297588239|ref|ZP_06946882.1| DNA ligase (NAD(+)) [Finegoldia magna ATCC 53516] gi|297573612|gb|EFH92333.1| DNA ligase (NAD(+)) [Finegoldia magna ATCC 53516] Length = 662 Score = 56.3 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 21/53 (39%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I IG L Q + + + + + L IE I IA +I FH T Sbjct: 511 GIPEIGEKTSFELAQKYKSFDNLREAKFDELIQIEDIGNVIAEEIVEFFHDET 563 Score = 37.0 bits (84), Expect = 9.8, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Query: 559 EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I+G+ ++LL+ +++ I E L +EG +K + + N K+ + Sbjct: 445 NIDGLSEKTLKVLLEKLNITSIEEIYDVKKEQLMQLEGFKEKKSQNLINAIEKSKN 500 >gi|295697355|ref|YP_003590593.1| DNA ligase, NAD-dependent [Bacillus tusciae DSM 2912] gi|295412957|gb|ADG07449.1| DNA ligase, NAD-dependent [Bacillus tusciae DSM 2912] Length = 677 Score = 56.3 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 6/68 (8%) Query: 551 KAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 ++ + L+ I IG R+L F + + +S E L + I K+A I Sbjct: 506 RSKQNSLERLLFGLGIRYIGEKASRVLAAHFKEMDALMEASSEELLKVPDIGAKMAQSIR 565 Query: 605 NHFHKNTS 612 +F + ++ Sbjct: 566 VYFGQESA 573 >gi|76788861|ref|YP_327947.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis A/HAR-13] gi|123731251|sp|Q3KMM3|DNLJ_CHLTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|76167391|gb|AAX50399.1| NAD-dependent DNA ligase [Chlamydia trachomatis A/HAR-13] Length = 663 Score = 56.3 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 550 KKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 KK A L I +G L F T+ + +S + L SIEGI K+A I Sbjct: 496 KKVALDRLLTALSIPFVGSSGAIALADHFVTLDKVIEASLDELMSIEGIGPKVAASIVAF 555 Query: 607 F--HKNTSH 613 F H+N Sbjct: 556 FSKHENREE 564 >gi|330995784|ref|ZP_08319681.1| DNA ligase [Paraprevotella xylaniphila YIT 11841] gi|329574514|gb|EGG56079.1| DNA ligase [Paraprevotella xylaniphila YIT 11841] Length = 669 Score = 56.3 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 25/51 (49%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 +G + + L + F ++ +S +S E + I GI IA + +F +H Sbjct: 518 VGEIAAKALARHFKSMDALSSASLEDMLQINGIGVVIAESVIRYFANEANH 568 >gi|161502427|ref|YP_001569539.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|190359281|sp|A9MIG0|DNLJ_SALAR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|160863774|gb|ABX20397.1| hypothetical protein SARI_00461 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 671 Score = 56.3 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S + L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALQAASIDELQKVPDVGIVVATHVFNFFAEESN 569 >gi|261493319|ref|ZP_05989845.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261310963|gb|EEY12140.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 685 Score = 56.3 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 25/47 (53%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L FG+++ I +++ E L ++ + + +A +I + + + Sbjct: 536 VGEATALNLANHFGSLEAIRQATFEQLKEVQDVGEVVANRIVSFWQE 582 >gi|261496584|ref|ZP_05992964.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307787|gb|EEY09110.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2 str. OVINE] Length = 685 Score = 56.3 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 25/47 (53%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L FG+++ I +++ E L ++ + + +A +I + + + Sbjct: 536 VGEATALNLANHFGSLEAIRQATFEQLKEVQDVGEVVANRIVSFWQE 582 >gi|260577534|ref|ZP_05845474.1| DNA ligase [Corynebacterium jeikeium ATCC 43734] gi|258604338|gb|EEW17575.1| DNA ligase [Corynebacterium jeikeium ATCC 43734] Length = 688 Score = 56.3 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 29/49 (59%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP + L + F +V+ I+ +S E +A I+G+++ IA I + F Sbjct: 518 SIRHVGPTAAKALAKHFESVEDIASASVEEMAGIDGVAETIAESISDWF 566 >gi|254360665|ref|ZP_04976814.1| DNA ligase (NAD(+)) [Mannheimia haemolytica PHL213] gi|153091205|gb|EDN73210.1| DNA ligase (NAD(+)) [Mannheimia haemolytica PHL213] Length = 685 Score = 56.3 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 25/47 (53%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L FG+++ I +++ E L ++ + + +A +I + + + Sbjct: 536 VGEATALNLANHFGSLEAIRQATFEQLKEVQDVGEVVANRIVSFWQE 582 >gi|219850499|ref|YP_002464932.1| DNA ligase, NAD-dependent [Chloroflexus aggregans DSM 9485] gi|254781282|sp|B8GAC1|DNLJ_CHLAD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|219544758|gb|ACL26496.1| DNA ligase, NAD-dependent [Chloroflexus aggregans DSM 9485] Length = 681 Score = 56.3 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 14/77 (18%) Query: 541 AITTHRKRRKKAAYSPLDE-ING-----IGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 AI R+R PLD I G +G + + L+ S G++ I + E L I G Sbjct: 510 AIDAARQR-------PLDRLIVGLGIRYVGSVAAQALVNSLGSLDAIMNARQEELEQIPG 562 Query: 595 ISKKIACKIYNHF-HKN 610 I +A I + F H Sbjct: 563 IGPVVAASIVDFFAHPE 579 >gi|289581750|ref|YP_003480216.1| DNA ligase, NAD-dependent [Natrialba magadii ATCC 43099] gi|289531303|gb|ADD05654.1| DNA ligase, NAD-dependent [Natrialba magadii ATCC 43099] Length = 699 Score = 56.3 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 4/57 (7%) Query: 554 YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET---LASIEGISKKIACKIYNHF 607 S L I +GP R L + FGT + + ++ + L ++ + + +A I+ F Sbjct: 532 LSAL-GIPHVGPTTARELAREFGTFEAVREAAEDDPAALEGVDDVGETVAETIHEFF 587 >gi|121594439|ref|YP_986335.1| DNA ligase [Acidovorax sp. JS42] gi|166215384|sp|A1W7N4|DNLJ_ACISJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|120606519|gb|ABM42259.1| DNA ligase, NAD-dependent [Acidovorax sp. JS42] Length = 731 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 6/63 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I +G + L + FG + I + E L + + +A I+ Sbjct: 556 KSKRTTLARFLFGLGIRHVGEATAKDLARHFGQLDAIMDAGVEQLLQVNDVGPVVAEAIH 615 Query: 605 NHF 607 F Sbjct: 616 TFF 618 >gi|159905661|ref|YP_001549323.1| Hef nuclease [Methanococcus maripaludis C6] gi|159887154|gb|ABX02091.1| ERCC4 domain protein [Methanococcus maripaludis C6] Length = 751 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%) Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 K R+K + + +GP+ LL +F +V+ I +S E L S++G+ A KI Sbjct: 688 KERQKFLV---EGLPDVGPVMAENLLDNFNSVENIFTASEEELKSVDGVGPITAKKIKE 743 >gi|157144662|ref|YP_001451981.1| NAD-dependent DNA ligase LigA [Citrobacter koseri ATCC BAA-895] gi|166215574|sp|A8ADI2|DNLJ_CITK8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157081867|gb|ABV11545.1| hypothetical protein CKO_00382 [Citrobacter koseri ATCC BAA-895] Length = 671 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S + L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIDELQKVPDVGIVVATHVFNFFAEESN 569 >gi|126296051|ref|XP_001367306.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 216 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +I G+G + LLLQ F +++ +S +S + L + G +A K++ F Sbjct: 166 QIPGVGKVMALLLLQEFPSIQKLSNASIQELERVVG--HTLAEKMHTFF 212 >gi|257095174|ref|YP_003168815.1| NAD-dependent DNA ligase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047698|gb|ACV36886.1| DNA ligase, NAD-dependent [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 675 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 3/67 (4%) Query: 541 AITTHRKRRKKAAYSPL-DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI R +R A I +G R L + FG++ + + ++L + + + Sbjct: 498 AIE--RSKRTTLARFIFALGIRNVGEATARELARHFGSLDRLLAADEDSLRQVPDVGPTV 555 Query: 600 ACKIYNH 606 A I Sbjct: 556 AQSIRQF 562 >gi|260584784|ref|ZP_05852529.1| DNA ligase, NAD-dependent [Granulicatella elegans ATCC 700633] gi|260157441|gb|EEW92512.1| DNA ligase, NAD-dependent [Granulicatella elegans ATCC 700633] Length = 668 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 AI T ++ + + L I +G + L F T++ + +++ E L +IEG+ IA Sbjct: 493 AIETSKQNSLERLLTGL-GIRNVGSKAAKDLAMHFETMENLQKATVEELVAIEGLGLVIA 551 Query: 601 CKIYNHFHKNT 611 + +F++ T Sbjct: 552 HSVLAYFNQET 562 >gi|146312580|ref|YP_001177654.1| NAD-dependent DNA ligase LigA [Enterobacter sp. 638] gi|190359255|sp|A4WD23|DNLJ_ENT38 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|145319456|gb|ABP61603.1| DNA ligase, NAD-dependent [Enterobacter sp. 638] Length = 671 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 25/50 (50%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +++ + L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAHFGTLEQLEKATIDDLQKVPDVGIVVATHVFNFFAEESN 569 >gi|317125504|ref|YP_004099616.1| DNA ligase, NAD-dependent [Intrasporangium calvum DSM 43043] gi|315589592|gb|ADU48889.1| DNA ligase, NAD-dependent [Intrasporangium calvum DSM 43043] Length = 715 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L +FG++ I R+S E LA EG+ + IA + F Sbjct: 559 SIRHVGPTAARALATTFGSMDAIRRASIEELAEAEGVGQIIAESVTAWF 607 >gi|313114130|ref|ZP_07799682.1| DNA ligase, NAD-dependent [Faecalibacterium cf. prausnitzii KLE1255] gi|310623539|gb|EFQ06942.1| DNA ligase, NAD-dependent [Faecalibacterium cf. prausnitzii KLE1255] Length = 666 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I IG LL + FGT++ + +S E ++ I+G +A + F K Sbjct: 512 GIRNIGDKAAALLAEHFGTLQAVREASAEQISEIDGFGGVMAQSVVEFFAKE 563 >gi|303241863|ref|ZP_07328358.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2] gi|302590638|gb|EFL60391.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2] Length = 344 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 3/49 (6%) Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKI 603 PLD + G+GP L++ FG+ +K+I ++ E LA + + +++A I Sbjct: 275 PLDFLPGVGPKTIDKLIKHFGSEMKIIHEATFEELAHV--VKEEVATNI 321 >gi|21673094|ref|NP_661159.1| DprA/SMF protein, putative DNA processing factor [Chlorobium tepidum TLS] gi|21646166|gb|AAM71501.1| DprA/SMF protein, putative DNA processing factor [Chlorobium tepidum TLS] Length = 399 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 22/44 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 ++ GIGP R R LL FG + + + L I GI + A + Sbjct: 37 QLPGIGPSRARALLNRFGATPALLEADYDALRQIPGIGETTARE 80 >gi|301633469|gb|ADK87023.1| DNA ligase (NAD(+)) [Mycoplasma pneumoniae FH] Length = 658 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 26/54 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G + + L + F + + +S ETL + + +A ++N FH + + Sbjct: 507 GIKHVGQVLAKSLTKHFENIDALQSASMETLLELPDVGPTVAESLFNWFHNDNN 560 >gi|215918993|ref|NP_819574.2| NAD-dependent DNA ligase [Coxiella burnetii RSA 493] gi|218512010|sp|Q83DZ6|DNLJ_COXBU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|206583878|gb|AAO90088.2| NAD-dependent DNA ligase [Coxiella burnetii RSA 493] Length = 673 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 6/68 (8%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I G+G R L + F + ++ ++S ETL I I A I+ Sbjct: 508 KSKKTTLPRFLYALGIRGVGDTTARTLARHFHELDLLMKASIETLQEIRDIGPVAAENIH 567 Query: 605 NHFHKNTS 612 FH+ + Sbjct: 568 AFFHQKNN 575 >gi|13508096|ref|NP_110045.1| DNA ligase [Mycoplasma pneumoniae M129] gi|2494169|sp|P78021|DNLJ_MYCPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|1674170|gb|AAB96127.1| DNA ligase [Mycoplasma pneumoniae M129] Length = 658 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 26/54 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G + + L + F + + +S ETL + + +A ++N FH + + Sbjct: 507 GIKHVGQVLAKSLTKHFENIDALQSASMETLLELPDVGPTVAESLFNWFHNDNN 560 >gi|91775756|ref|YP_545512.1| DNA ligase, NAD-dependent [Methylobacillus flagellatus KT] gi|123254532|sp|Q1H1G6|DNLJ_METFK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|91709743|gb|ABE49671.1| DNA ligase, NAD-dependent [Methylobacillus flagellatus KT] Length = 693 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 3/67 (4%) Query: 547 KRRKKAAYSPL---DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 ++ K+A + I +G + L + FG + + + +TL + + +A I Sbjct: 525 QKSKQATLNRFIYALGIRNVGEATAKDLARHFGRLDALQAADVDTLQQVPDVGPVVARSI 584 Query: 604 YNHFHKN 610 F + Sbjct: 585 AEFFAEE 591 >gi|332525978|ref|ZP_08402119.1| DNA ligase (NAD+) [Rubrivivax benzoatilyticus JA2] gi|332109529|gb|EGJ10452.1| DNA ligase (NAD+) [Rubrivivax benzoatilyticus JA2] Length = 686 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 19/45 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + L + FG + + +S E L + + +A I F Sbjct: 526 VGEATAKDLARHFGGLDRVMDASVEQLLEVRDVGPIVAQSIRTFF 570 >gi|291544905|emb|CBL18014.1| DNA ligase, NAD-dependent [Ruminococcus sp. 18P13] Length = 660 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 11/81 (13%) Query: 539 RFAITTHRKRRK---KAAYSPLD------EINGIGPLRKRLLL-QSFGTVKMISRSSPET 588 RFA + R K+ +PLD I GIG R +LL F +V+ I +S E Sbjct: 479 RFAEKSARNLLDAIEKSKSAPLDRVIFGLGIRGIG-QRAAVLLCDRFPSVEQIMNASVEQ 537 Query: 589 LASIEGISKKIACKIYNHFHK 609 LA I+G +A + F + Sbjct: 538 LAEIDGFGSIMAESVVQAFRE 558 >gi|253575959|ref|ZP_04853293.1| DNA ligase, NAD-dependent [Paenibacillus sp. oral taxon 786 str. D14] gi|251844753|gb|EES72767.1| DNA ligase, NAD-dependent [Paenibacillus sp. oral taxon 786 str. D14] Length = 672 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + + S L I G ++L FG+++ + ++ E L ++ I +A I N Sbjct: 502 KGRDLASFLFALGIPNTGKSTTKVLADHFGSLEAVMSATTEELTALPDIGGIVADSIVNF 561 Query: 607 F 607 F Sbjct: 562 F 562 >gi|171059186|ref|YP_001791535.1| DNA ligase, NAD-dependent [Leptothrix cholodnii SP-6] gi|254781357|sp|B1Y6D4|DNLJ_LEPCP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|170776631|gb|ACB34770.1| DNA ligase, NAD-dependent [Leptothrix cholodnii SP-6] Length = 768 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 6/63 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I +G + L + FG + + +S + L ++ + +A I Sbjct: 578 KSKQTTLARFLFSLGIRQVGEATAKALARHFGALDRVMDASVDQLQAVPDVGPIVALSIR 637 Query: 605 NHF 607 F Sbjct: 638 TFF 640 >gi|310826558|ref|YP_003958915.1| DNA ligase [Eubacterium limosum KIST612] gi|308738292|gb|ADO35952.1| DNA ligase [Eubacterium limosum KIST612] Length = 666 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 26/54 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G ++L FG++ + +S E L I I K+A +I + F + + Sbjct: 514 GIPLVGANGAKILASHFGSMDALMEASEEELTEIYDIGGKMAVEIVDFFKTDAN 567 >gi|227494609|ref|ZP_03924925.1| DNA ligase (NAD(+)) [Actinomyces coleocanis DSM 15436] gi|226832343|gb|EEH64726.1| DNA ligase (NAD(+)) [Actinomyces coleocanis DSM 15436] Length = 806 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 25/50 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I +GP + L F ++ + ++S LA++EG+ + IA + F Sbjct: 647 SIRHVGPTASQALADHFRSLDALQQASVAELAAVEGVGQIIAEAVVAWFQ 696 >gi|332798609|ref|YP_004460108.1| DNA ligase [Tepidanaerobacter sp. Re1] gi|332696344|gb|AEE90801.1| DNA ligase [Tepidanaerobacter sp. Re1] Length = 675 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 3/68 (4%) Query: 550 KKAAYSPL---DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 KK + L I IG L Q F ++ + ++ E L I I K+A I Sbjct: 504 KKQPLNRLVYALGIPLIGSKASLTLAQEFKSMDRLQNATYEELIKIPEIGDKMAESIIAF 563 Query: 607 FHKNTSHT 614 F + + Sbjct: 564 FKQEQTKA 571 >gi|152965283|ref|YP_001361067.1| DNA ligase, NAD-dependent [Kineococcus radiotolerans SRS30216] gi|190359261|sp|A6W7L4|DNLJ_KINRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|151359800|gb|ABS02803.1| DNA ligase, NAD-dependent [Kineococcus radiotolerans SRS30216] Length = 696 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 24/49 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG+++ I ++ E +AS EG+ IA + Sbjct: 529 SIRHVGPTAARALADRFGSMEAIEAATAEDIASAEGVGPTIAEAVVEWL 577 >gi|283458551|ref|YP_003363181.1| NAD-dependent DNA ligase [Rothia mucilaginosa DY-18] gi|283134596|dbj|BAI65361.1| NAD-dependent DNA ligase [Rothia mucilaginosa DY-18] Length = 747 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 27/52 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +GP R L FG+++ I + E LA+++G+ IA I F ++ Sbjct: 585 SIRHVGPTAARALAAEFGSMQAIREADRERLAAVDGVGTTIADSIIEWFAED 636 >gi|255327262|ref|ZP_05368336.1| DNA ligase, NAD-dependent [Rothia mucilaginosa ATCC 25296] gi|255295542|gb|EET74885.1| DNA ligase, NAD-dependent [Rothia mucilaginosa ATCC 25296] Length = 735 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 27/52 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +GP R L FG+++ I + E LA+++G+ IA I F ++ Sbjct: 573 SIRHVGPTAARALAAEFGSMQAIREADRERLAAVDGVGTTIADSIIEWFAED 624 >gi|261418603|ref|YP_003252285.1| NAD-dependent DNA ligase LigA [Geobacillus sp. Y412MC61] gi|319765418|ref|YP_004130919.1| DNA ligase, NAD-dependent [Geobacillus sp. Y412MC52] gi|261375060|gb|ACX77803.1| DNA ligase, NAD-dependent [Geobacillus sp. Y412MC61] gi|317110284|gb|ADU92776.1| DNA ligase, NAD-dependent [Geobacillus sp. Y412MC52] Length = 670 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF-HKNTSH 613 +G +LL + F T++ + +++ E L ++ I +K+A I F + Sbjct: 514 VGAKAAQLLAEHFETMERLEKATKEELMAVPEIGEKMADSIIAFFSQPEAAE 565 >gi|161598439|ref|YP_120478.2| NAD-dependent DNA ligase LigA [Nocardia farcinica IFM 10152] Length = 710 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG+++ I ++S + LA+ +G+ IA + F Sbjct: 545 SIRHVGPTAARALAAEFGSMERIEQASVDELAATDGVGPTIAAAVAEWF 593 >gi|81373659|sp|Q5YRS7|DNLJ2_NOCFA RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 2 gi|54017744|dbj|BAD59114.1| putative DNA ligase [Nocardia farcinica IFM 10152] Length = 683 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG+++ I ++S + LA+ +G+ IA + F Sbjct: 518 SIRHVGPTAARALAAEFGSMERIEQASVDELAATDGVGPTIAAAVAEWF 566 >gi|301788720|ref|XP_002929779.1| PREDICTED: Fanconi anemia-associated protein of 24 kDa-like [Ailuropoda melanoleuca] Length = 215 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 9/67 (13%) Query: 548 RRKKAAY----SPL---DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 KK S L +I G+G ++ LLLQ F +++ +S +S L + G + +A Sbjct: 147 LSKKRTQVPELSLLRTVQQIPGVGKVKAPLLLQKFPSIQQLSNASIRELEPVVG--QAVA 204 Query: 601 CKIYNHF 607 I F Sbjct: 205 QHIQEFF 211 >gi|281344109|gb|EFB19693.1| hypothetical protein PANDA_020057 [Ailuropoda melanoleuca] Length = 214 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 9/67 (13%) Query: 548 RRKKAAY----SPL---DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 KK S L +I G+G ++ LLLQ F +++ +S +S L + G + +A Sbjct: 147 LSKKRTQVPELSLLRTVQQIPGVGKVKAPLLLQKFPSIQQLSNASIRELEPVVG--QAVA 204 Query: 601 CKIYNHF 607 I F Sbjct: 205 QHIQEFF 211 >gi|268316781|ref|YP_003290500.1| DNA ligase, NAD-dependent [Rhodothermus marinus DSM 4252] gi|262334315|gb|ACY48112.1| DNA ligase, NAD-dependent [Rhodothermus marinus DSM 4252] Length = 712 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 9/82 (10%) Query: 540 FAITTHRKR------RKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 FA T R K+ S L I +G LL+Q F ++ ++ ++ + LA Sbjct: 529 FAETRARNLLRAIEASKQRPLSRLLFGLGIRHVGKTTAELLVQRFASIDELAAATIDELA 588 Query: 591 SIEGISKKIACKIYNHFHKNTS 612 ++EG+ A I N F + Sbjct: 589 ALEGVGPITAESIANWFRVEDN 610 >gi|27262356|gb|AAN87459.1| NAD-dependent DNA ligase [Heliobacillus mobilis] Length = 677 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 24/45 (53%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + L FG+++ + ++ E L +I I K+A + N+F Sbjct: 527 VGQTAAKTLASHFGSMEKLMAATQEELQAIPEIGPKMADSLKNYF 571 >gi|1352292|sp|P49421|DNLJ_RHOMR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|607820|gb|AAA93198.1| DNA ligase [Rhodothermus marinus] Length = 712 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 9/82 (10%) Query: 540 FAITTHRKR------RKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 FA T R K+ S L I +G LL+Q F ++ ++ ++ + LA Sbjct: 529 FAETRARNLLRAIEASKQRPLSRLLFGLGIRHVGKTTAELLVQRFASIDELAAATIDELA 588 Query: 591 SIEGISKKIACKIYNHFHKNTS 612 ++EG+ A I N F + Sbjct: 589 ALEGVGPITAESIANWFRVEDN 610 >gi|73948534|ref|XP_533705.2| PREDICTED: hypothetical protein XP_533705 [Canis familiaris] Length = 339 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +I G+G ++ LLLQ F +++ +S +S L + G +A I F Sbjct: 289 QIPGVGKVKALLLLQKFPSIQQLSNASLRELEPVVG--PAVAQHIQAFF 335 >gi|161831535|ref|YP_001596473.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 331] gi|190359249|sp|A9NC33|DNLJ_COXBR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|161763402|gb|ABX79044.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 331] Length = 670 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 6/68 (8%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I G+G R L + F + ++ ++S ETL I I A I+ Sbjct: 505 KSKKTTLPRFLYALGIRGVGDTTARTLARHFHELDLLMKASIETLQEIRDIGPVAAENIH 564 Query: 605 NHFHKNTS 612 FH+ + Sbjct: 565 AFFHQKNN 572 >gi|148358134|ref|YP_001249336.1| GIY endonuclease [Gibberella zeae] gi|86142533|gb|ABC86648.1| GIY endonuclease [Gibberella zeae] Length = 277 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 14/95 (14%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM--HSNNHTHR---ITHMISQINNI 58 +++ + GVY ++ LY+G + NL R+ SY ++ + I M + Sbjct: 47 KELRKKSGVYLFINNITNDLYIGSSTNLTSRMVSYYYYTNSQKPSKLVIIRAMKK--YGL 104 Query: 59 R------FTVTCTEVEALLLEANMIKRLKPRFNIL 87 + ++ L+LE I P++N+L Sbjct: 105 DNFSLAIIELCEKDL-CLILEQKWIDHYTPKYNVL 138 >gi|323143662|ref|ZP_08078336.1| DNA ligase (NAD+) [Succinatimonas hippei YIT 12066] gi|322416595|gb|EFY07255.1| DNA ligase (NAD+) [Succinatimonas hippei YIT 12066] Length = 696 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 21/47 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L F T+ I R+S E L + I +A IY+ F + Sbjct: 530 VGESTALTLATHFETLNDIMRASVEDLMKLPDIGVVVANHIYDFFKE 576 >gi|223041748|ref|ZP_03611941.1| DNA ligase [Actinobacillus minor 202] gi|223017432|gb|EEF15850.1| DNA ligase [Actinobacillus minor 202] Length = 680 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 22/47 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L FG++ I ++ E L ++ + + +A +I + + Sbjct: 530 VGEATALNLANHFGSLDAIRAATFEQLQEVQDVGEVVANRIVRFWQE 576 >gi|222481049|ref|YP_002567286.1| DNA ligase, NAD-dependent [Halorubrum lacusprofundi ATCC 49239] gi|254781342|sp|B9LU22|DNLJ_HALLT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|222453951|gb|ACM58216.1| DNA ligase, NAD-dependent [Halorubrum lacusprofundi ATCC 49239] Length = 710 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 6/63 (9%) Query: 556 PLDE------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 PLD+ I +G R L FG + I + + L +++ + ++A I Sbjct: 541 PLDDFLAGLGIPDVGATTARALAAHFGDLDAILDADEDALRAVDDVGPEVAESIRTFLDN 600 Query: 610 NTS 612 + Sbjct: 601 AEN 603 >gi|297528690|ref|YP_003669965.1| DNA ligase, NAD-dependent [Geobacillus sp. C56-T3] gi|297251942|gb|ADI25388.1| DNA ligase, NAD-dependent [Geobacillus sp. C56-T3] Length = 670 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF-HKNTSH 613 +G +LL + F T++ + +++ E L ++ I +K+A I F + Sbjct: 514 VGAKAAQLLAEHFETMERLEKATKEELMAVPEIGEKMADSIIAFFSQPEAAE 565 >gi|15894478|ref|NP_347827.1| NAD-dependent DNA ligase LigA [Clostridium acetobutylicum ATCC 824] gi|81530636|sp|Q97JS8|DNLJ1_CLOAB RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 1 gi|15024117|gb|AAK79167.1|AE007633_11 DNA ligase (NAD dependent), LigA [Clostridium acetobutylicum ATCC 824] gi|325508609|gb|ADZ20245.1| NAD-dependent DNA ligase LigA [Clostridium acetobutylicum EA 2018] Length = 663 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 22/52 (42%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +G L + F + + I ++S L ++ I +A I + F + Sbjct: 509 GIPNVGKKTATDLCKQFKSFENIKKASYFELILVQDIGSIVAKSIVDFFKQE 560 >gi|222110866|ref|YP_002553130.1| NAD-dependent DNA ligase [Acidovorax ebreus TPSY] gi|254781316|sp|B9MIW4|DNLJ_DIAST RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|221730310|gb|ACM33130.1| DNA ligase, NAD-dependent [Acidovorax ebreus TPSY] Length = 740 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 6/63 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I +G + L + FG + I + E L + + +A I+ Sbjct: 565 KSKRTTLARFLFGLGIRHVGEATAKDLARHFGRLDAIMDAGVEQLLQVNDVGPVVAEAIH 624 Query: 605 NHF 607 F Sbjct: 625 TFF 627 >gi|86131748|ref|ZP_01050345.1| DNA ligase (NAD(+)) [Dokdonia donghaensis MED134] gi|85817570|gb|EAQ38744.1| DNA ligase (NAD(+)) [Dokdonia donghaensis MED134] Length = 664 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 +G + L + + ++ I ++ E L +++ I KIA + F K Sbjct: 514 VGETVAKKLAKHYKSIDAIISATEEELVAVDEIGIKIAESVVAFFAKAE 562 >gi|212212963|ref|YP_002303899.1| NAD-dependent DNA ligase [Coxiella burnetii CbuG_Q212] gi|254781302|sp|B6J1C6|DNLJ_COXB2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|212011373|gb|ACJ18754.1| NAD-dependent DNA ligase [Coxiella burnetii CbuG_Q212] Length = 677 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 6/65 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I G+G R L + F + ++ ++S ETL I I A I+ Sbjct: 508 KSKKTTLPRFLYALGIRGVGDTTARTLARHFHELDLLMKASIETLQEIRDIGPVAAENIH 567 Query: 605 NHFHK 609 FH+ Sbjct: 568 AFFHQ 572 >gi|150400569|ref|YP_001324335.1| Hef nuclease [Methanococcus aeolicus Nankai-3] gi|150013272|gb|ABR55723.1| DEAD/DEAH box helicase domain protein [Methanococcus aeolicus Nankai-3] Length = 808 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 26/50 (52%) Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + IG L LL FGT++ I ++S E L +EGI + A KI + Sbjct: 753 ESFPDIGALMAENLLIKFGTIENIVKASVEELREVEGIGEITAKKIKSVL 802 >gi|315634861|ref|ZP_07890143.1| NAD-dependent DNA ligase LigA [Aggregatibacter segnis ATCC 33393] gi|315476413|gb|EFU67163.1| NAD-dependent DNA ligase LigA [Aggregatibacter segnis ATCC 33393] Length = 671 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 6/66 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA ++ L I +G L F T++ + + E L + + + +A +I+ Sbjct: 504 KAKHTTLARFIFALGIRDVGEATALNLANHFKTLEALQNADLEQLQQVPDVGEVVANRIF 563 Query: 605 NHFHKN 610 + + Sbjct: 564 VFWREE 569 >gi|169831769|ref|YP_001717751.1| NAD-dependent DNA ligase [Candidatus Desulforudis audaxviator MP104C] gi|254781311|sp|B1I551|DNLJ_DESAP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|169638613|gb|ACA60119.1| DNA ligase, NAD-dependent [Candidatus Desulforudis audaxviator MP104C] Length = 672 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Query: 546 RKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 R + +S I +G RLL + FG++ + + E L ++ I KIA + N Sbjct: 504 RNSLARLIFS--LGIRHVGERAARLLAERFGSLAGLMAAGREELEAVPEIGPKIADSVLN 561 Query: 606 HFHKNTS 612 F + + Sbjct: 562 FFAREQN 568 >gi|68057854|gb|AAX88107.1| DNA ligase [Haemophilus influenzae 86-028NP] Length = 679 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 6/65 (9%) Query: 551 KAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 A + LD I +G L F T+ + ++ E L + + + +A +I+ Sbjct: 512 NAKSTTLDRFIFALGIREVGEATALNLANHFKTLDALKDANLEELQQVPDVGEVVANRIF 571 Query: 605 NHFHK 609 + + Sbjct: 572 IFWRE 576 >gi|161761269|ref|YP_248767.2| NAD-dependent DNA ligase LigA [Haemophilus influenzae 86-028NP] gi|166215835|sp|Q4QLJ0|DNLJ_HAEI8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|309973429|gb|ADO96630.1| NAD-dependent DNA ligase [Haemophilus influenzae R2846] Length = 670 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 6/65 (9%) Query: 551 KAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 A + LD I +G L F T+ + ++ E L + + + +A +I+ Sbjct: 503 NAKSTTLDRFIFALGIREVGEATALNLANHFKTLDALKDANLEELQQVPDVGEVVANRIF 562 Query: 605 NHFHK 609 + + Sbjct: 563 IFWRE 567 >gi|41615212|ref|NP_963710.1| DNA repair and recombination protein RadA [Nanoarchaeum equitans Kin4-M] gi|73913726|sp|Q74MX9|RADA_NANEQ RecName: Full=DNA repair and recombination protein radA gi|40068936|gb|AAR39271.1| NEQ426 [Nanoarchaeum equitans Kin4-M] Length = 325 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%) Query: 558 DEI---NGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606 D+I G+GP L+ + + ++ I+ +S E L I + A KI Sbjct: 11 DDIRSLPGVGPKTAEKLISAGYDSLIKIASASVEELMEAADIGEATARKIIEA 63 >gi|163940392|ref|YP_001645276.1| excinuclease ABC subunit C [Bacillus weihenstephanensis KBAB4] gi|229011966|ref|ZP_04169146.1| hypothetical protein bmyco0001_24120 [Bacillus mycoides DSM 2048] gi|229060384|ref|ZP_04197750.1| hypothetical protein bcere0026_24840 [Bacillus cereus AH603] gi|229133533|ref|ZP_04262360.1| hypothetical protein bcere0014_24520 [Bacillus cereus BDRD-ST196] gi|229167543|ref|ZP_04295281.1| hypothetical protein bcere0007_25060 [Bacillus cereus AH621] gi|163862589|gb|ABY43648.1| Excinuclease ABC C subunit domain protein [Bacillus weihenstephanensis KBAB4] gi|228616105|gb|EEK73192.1| hypothetical protein bcere0007_25060 [Bacillus cereus AH621] gi|228649933|gb|EEL05941.1| hypothetical protein bcere0014_24520 [Bacillus cereus BDRD-ST196] gi|228718974|gb|EEL70591.1| hypothetical protein bcere0026_24840 [Bacillus cereus AH603] gi|228749380|gb|EEL99225.1| hypothetical protein bmyco0001_24120 [Bacillus mycoides DSM 2048] Length = 126 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G++ +I +L+VGKA +++RIK + N + ++ I + E Sbjct: 47 GIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSPIKNNR--DEVYRIDACIVEDPTERE 104 Query: 71 LLEANMIKRLKPRFNI 86 + E +I + K ++N+ Sbjct: 105 IYETYIINKYKAKYNV 120 >gi|255021565|ref|ZP_05293608.1| DNA ligase [Acidithiobacillus caldus ATCC 51756] gi|254968953|gb|EET26472.1| DNA ligase [Acidithiobacillus caldus ATCC 51756] Length = 659 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 17/74 (22%) Query: 551 KAAYSPLDEING-----------------IGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 ++A LDEI G +G + L Q FG ++ + S E L + Sbjct: 478 RSAQKLLDEIAGSRQTEFARFLYALGIHQVGESTAKALAQHFGDLETLMAVSAEDLQEVP 537 Query: 594 GISKKIACKIYNHF 607 + +A I + F Sbjct: 538 DVGPVVAEAILHFF 551 >gi|62180995|ref|YP_217412.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|75481868|sp|Q57LT1|DNLJ_SALCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|62128628|gb|AAX66331.1| DNA ligase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715476|gb|EFZ07047.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 671 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + ++ + L + + +A ++N F + ++ Sbjct: 520 VGEATAEGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 569 >gi|319955749|ref|YP_004167016.1| DNA ligase [Cellulophaga algicola DSM 14237] gi|319424409|gb|ADV51518.1| DNA ligase [Cellulophaga algicola DSM 14237] Length = 666 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 24/51 (47%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 +G + L +++ + + +S E L ++ I ++IA + F T+ Sbjct: 515 VGETVAKKLAKAYKNIDALKVASVEELVKVDEIGERIANSVVEFFQNETNQ 565 >gi|86608165|ref|YP_476927.1| DNA protecting protein DprA [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556707|gb|ABD01664.1| DNA protecting protein DprA [Synechococcus sp. JA-2-3B'a(2-13)] Length = 385 Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 24/44 (54%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 I GIGP R + L + FG+++ ++ L +EGI +A I Sbjct: 36 IKGIGPHRLKRLAEFFGSLERAWQADAPALRQVEGIGPTLAQAI 79 >gi|218903835|ref|YP_002451669.1| GIY-YIG catalytic domain protein [Bacillus cereus AH820] gi|228927761|ref|ZP_04090809.1| hypothetical protein bthur0010_24660 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229122260|ref|ZP_04251474.1| hypothetical protein bcere0016_25550 [Bacillus cereus 95/8201] gi|218536516|gb|ACK88914.1| GIY-YIG catalytic domain protein [Bacillus cereus AH820] gi|228661109|gb|EEL16735.1| hypothetical protein bcere0016_25550 [Bacillus cereus 95/8201] gi|228831824|gb|EEM77413.1| hypothetical protein bthur0010_24660 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 126 Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G++ +I +L+VGKA +++RIK + N + ++ I V E Sbjct: 47 GIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSPIKNHR--DEVYRIDACVVEDPTERE 104 Query: 71 LLEANMIKRLKPRFNI 86 + E +I K ++N+ Sbjct: 105 IYETYIINEYKAKYNV 120 >gi|284042834|ref|YP_003393174.1| DNA ligase, NAD-dependent [Conexibacter woesei DSM 14684] gi|283947055|gb|ADB49799.1| DNA ligase, NAD-dependent [Conexibacter woesei DSM 14684] Length = 684 Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I G+G + R L Q F T+ ++ +S E +A+ GI + I++ Sbjct: 519 GIEGVGSVTGRSLAQRFRTIDALTAASAEEIAATPGIGPIVGRLIHDQLRDE 570 >gi|320102706|ref|YP_004178297.1| NAD-dependent DNA ligase [Isosphaera pallida ATCC 43644] gi|319749988|gb|ADV61748.1| DNA ligase, NAD-dependent [Isosphaera pallida ATCC 43644] Length = 896 Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 G+G L + FGT++ + ++ + L ++ I + +A ++ + Sbjct: 533 GVGSA--ETLARKFGTLEALRAATIDELKAVPDIGEIVAESVFQYLR 577 >gi|240948595|ref|ZP_04752968.1| NAD-dependent DNA ligase LigA [Actinobacillus minor NM305] gi|240297103|gb|EER47674.1| NAD-dependent DNA ligase LigA [Actinobacillus minor NM305] Length = 679 Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 23/47 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L FG+++ I ++ E L ++ + + +A +I + + Sbjct: 530 VGEATALNLANHFGSLEAIRTATFEQLQEVQDVGEVVANRIVRFWQE 576 >gi|257784913|ref|YP_003180130.1| DNA ligase, NAD-dependent [Atopobium parvulum DSM 20469] gi|257473420|gb|ACV51539.1| DNA ligase, NAD-dependent [Atopobium parvulum DSM 20469] Length = 705 Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 25/45 (55%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G LL Q FG+++ ++ + E +A I GI KIA ++ F Sbjct: 551 VGANVAELLAQEFGSIQALATAPVEKIAEIPGIGPKIAESVHEFF 595 >gi|225352232|ref|ZP_03743255.1| hypothetical protein BIFPSEUDO_03848 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157479|gb|EEG70818.1| hypothetical protein BIFPSEUDO_03848 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 909 Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 27/45 (60%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +GP R++ +FG++ I R+S + L+ I+GI +IA + F Sbjct: 753 LGPPTARVIANTFGSLDAIERASVDELSQIDGIGPEIAESVVTWF 797 >gi|146294702|ref|YP_001185126.1| ERCC4 domain-containing protein [Shewanella putrefaciens CN-32] gi|145566392|gb|ABP77327.1| ERCC4 domain protein [Shewanella putrefaciens CN-32] gi|319427939|gb|ADV56013.1| ERCC4 domain protein [Shewanella putrefaciens 200] Length = 212 Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%) Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 KR+K L + + P LL F ++ I + E L +EG+ K+ A KI Sbjct: 150 KRKKNQQLFILQSLPEVDPKLASRLLYHFKNIEAIFTAPEEALIRVEGMGKEKARKIREA 209 Query: 607 F 607 Sbjct: 210 L 210 >gi|332653279|ref|ZP_08419024.1| DNA ligase, NAD-dependent [Ruminococcaceae bacterium D16] gi|332518425|gb|EGJ48028.1| DNA ligase, NAD-dependent [Ruminococcaceae bacterium D16] Length = 657 Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 3/63 (4%) Query: 548 RRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 + K S L I +G ++L Q FG++ + ++ E L ++ I A I Sbjct: 493 KSKSQDLSRLLFAFGIRQVGQKAGKILAQRFGSLDNLQAATVEELTQVDDIGAITAQSIV 552 Query: 605 NHF 607 + F Sbjct: 553 DWF 555 >gi|284166901|ref|YP_003405180.1| DNA ligase, NAD-dependent [Haloterrigena turkmenica DSM 5511] gi|284016556|gb|ADB62507.1| DNA ligase, NAD-dependent [Haloterrigena turkmenica DSM 5511] Length = 692 Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Query: 554 YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET---LASIEGISKKIACKIYNHFHKN 610 S L I +GP R L + FGT + ++ + L + + + +A +++ F Sbjct: 527 LSAL-GIPHVGPTTARELAREFGTFEAFREAAEDEPERLEDVPDVGETVAEQLHEFFTSE 585 Query: 611 TSHT 614 + Sbjct: 586 ANAA 589 >gi|330013648|ref|ZP_08307732.1| DNA ligase [Klebsiella sp. MS 92-3] gi|328533421|gb|EGF60158.1| DNA ligase [Klebsiella sp. MS 92-3] Length = 671 Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + ++S E L + + +A +N F + ++ Sbjct: 520 VGEATAAGLAAHFGTLEALEQASIEELQKVPDVGIVVATHTFNFFAEESN 569 >gi|328954073|ref|YP_004371407.1| DNA ligase [Desulfobacca acetoxidans DSM 11109] gi|328454397|gb|AEB10226.1| DNA ligase [Desulfobacca acetoxidans DSM 11109] Length = 676 Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G LL + F T+ + ++ E L IEGI ++A I ++F + Sbjct: 527 VGEATANLLARHFQTLNALKAAAVEDLLLIEGIGPQVAASIRDYFQNPKNQA 578 >gi|304385588|ref|ZP_07367932.1| NAD-dependent DNA ligase LigA [Pediococcus acidilactici DSM 20284] gi|304328092|gb|EFL95314.1| NAD-dependent DNA ligase LigA [Pediococcus acidilactici DSM 20284] Length = 675 Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 AI + R+ + + L I G+G R L ++FG++ + +S E +++ + + +A Sbjct: 503 AIDSSRQNSLERLVNGL-GIQGVGTKMARTLAEAFGSMDRLMEASVEEFDAVDTVGETLA 561 Query: 601 CKIYNHFHKNTS 612 + F + Sbjct: 562 NNLATFFQSEAA 573 >gi|319762938|ref|YP_004126875.1| DNA ligase, nad-dependent [Alicycliphilus denitrificans BC] gi|330825018|ref|YP_004388321.1| DNA ligase [Alicycliphilus denitrificans K601] gi|317117499|gb|ADU99987.1| DNA ligase, NAD-dependent [Alicycliphilus denitrificans BC] gi|329310390|gb|AEB84805.1| DNA ligase, NAD-dependent [Alicycliphilus denitrificans K601] Length = 717 Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 6/64 (9%) Query: 550 KKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 +K+ + L I +G + L + FG + I + + L + + +A I Sbjct: 547 QKSKQTTLPRFLFGLGIRHVGEATAKDLARHFGALDAIMDAGVDQLLQVNDVGPVVAESI 606 Query: 604 YNHF 607 + F Sbjct: 607 HTFF 610 >gi|152971289|ref|YP_001336398.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|166215815|sp|A6TC47|DNLJ_KLEP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|150956138|gb|ABR78168.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 671 Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + ++S E L + + +A +N F + ++ Sbjct: 520 VGEATAAGLAAHFGTLEALEQASIEELQKVPDVGIVVATHTFNFFAEESN 569 >gi|326574755|gb|EGE24691.1| NAD-dependent DNA ligase [Moraxella catarrhalis 101P30B1] Length = 691 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 6/66 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I G+G L Q FG ++ I + + L ++ I + A IY Sbjct: 520 KSKQTTLPRFIFALGIRGVGESTALSLAQQFGELQSIIEADLQALQAVPDIGEITAQSIY 579 Query: 605 NHFHKN 610 + F + Sbjct: 580 DFFRAS 585 >gi|326573825|gb|EGE23778.1| NAD-dependent DNA ligase [Moraxella catarrhalis O35E] Length = 691 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 6/66 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I G+G L Q FG ++ I + + L ++ I + A IY Sbjct: 520 KSKQTTLPRFIFALGIRGVGESTALSLAQQFGELQSIIEADLQALQAVPDIGEITAQSIY 579 Query: 605 NHFHKN 610 + F + Sbjct: 580 DFFRAS 585 >gi|326572929|gb|EGE22914.1| NAD-dependent DNA ligase [Moraxella catarrhalis CO72] Length = 691 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 6/66 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I G+G L Q FG ++ I + + L ++ I + A IY Sbjct: 520 KSKQTTLPRFIFALGIRGVGESTALSLAQQFGELQSIIEADLQALQAVPDIGEITAQSIY 579 Query: 605 NHFHKN 610 + F + Sbjct: 580 DFFRAS 585 >gi|326570074|gb|EGE20120.1| NAD-dependent DNA ligase [Moraxella catarrhalis BC7] Length = 691 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 6/66 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I G+G L Q FG ++ I + + L ++ I + A IY Sbjct: 520 KSKQTTLPRFIFALGIRGVGESTALSLAQQFGELQSIIEADLQALQAVPDIGEITAQSIY 579 Query: 605 NHFHKN 610 + F + Sbjct: 580 DFFRAS 585 >gi|326569993|gb|EGE20040.1| NAD-dependent DNA ligase [Moraxella catarrhalis BC1] Length = 691 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 6/66 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I G+G L Q FG ++ I + + L ++ I + A IY Sbjct: 520 KSKQTTLPRFIFALGIRGVGESTALSLAQQFGELQSIIEADLQALQAVPDIGEITAQSIY 579 Query: 605 NHFHKN 610 + F + Sbjct: 580 DFFRAS 585 >gi|326564268|gb|EGE14498.1| NAD-dependent DNA ligase [Moraxella catarrhalis 103P14B1] Length = 691 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 6/66 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I G+G L Q FG ++ I + + L ++ I + A IY Sbjct: 520 KSKQTTLPRFIFALGIRGVGESTALSLAQQFGELQSIIEADLQALQAVPDIGEITAQSIY 579 Query: 605 NHFHKN 610 + F + Sbjct: 580 DFFRAS 585 >gi|326562480|gb|EGE12798.1| NAD-dependent DNA ligase [Moraxella catarrhalis 46P47B1] gi|326567201|gb|EGE17321.1| NAD-dependent DNA ligase [Moraxella catarrhalis 12P80B1] gi|326568292|gb|EGE18374.1| NAD-dependent DNA ligase [Moraxella catarrhalis BC8] Length = 691 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 6/66 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I G+G L Q FG ++ I + + L ++ I + A IY Sbjct: 520 KSKQTTLPRFIFALGIRGVGESTALSLAQQFGELQSIIEADLQALQAVPDIGEITAQSIY 579 Query: 605 NHFHKN 610 + F + Sbjct: 580 DFFRAS 585 >gi|326559356|gb|EGE09783.1| NAD-dependent DNA ligase [Moraxella catarrhalis 7169] Length = 691 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 6/66 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I G+G L Q FG ++ I + + L ++ I + A IY Sbjct: 520 KSKQTTLPRFIFALGIRGVGESTALSLAQQFGELQSIIEADLQALQAVPDIGEITAQSIY 579 Query: 605 NHFHKN 610 + F + Sbjct: 580 DFFRAS 585 >gi|320157090|ref|YP_004189469.1| DNA ligase [Vibrio vulnificus MO6-24/O] gi|319932402|gb|ADV87266.1| DNA ligase [Vibrio vulnificus MO6-24/O] Length = 669 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 22/51 (43%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 +G L + F T++ I ++ E L + I + +A I F + + Sbjct: 521 VGEATAANLARHFKTLEAIQTATHEQLIEVPDIGEVVARHITAFFAEEKNQ 571 >gi|296113927|ref|YP_003627865.1| NAD-dependent DNA ligase [Moraxella catarrhalis RH4] gi|295921621|gb|ADG61972.1| NAD-dependent DNA ligase [Moraxella catarrhalis RH4] Length = 691 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 6/66 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I G+G L Q FG ++ I + + L ++ I + A IY Sbjct: 520 KSKQTTLPRFIFALGIRGVGESTALSLAQQFGELQSIIEADLQALQAVPDIGEITAQSIY 579 Query: 605 NHFHKN 610 + F + Sbjct: 580 DFFRAS 585 >gi|262037707|ref|ZP_06011149.1| DNA ligase (NAD(+)) [Leptotrichia goodfellowii F0264] gi|261748179|gb|EEY35576.1| DNA ligase (NAD(+)) [Leptotrichia goodfellowii F0264] Length = 697 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 K YS I +G LL+++F ++ + S E L I+G+ +K+A ++N+ + Sbjct: 536 KVLYS--LGIPFVGKFTANLLVKNFKNIENLKNSEIEELLQIKGVGEKVAISVHNYLNNE 593 Query: 611 TS 612 + Sbjct: 594 DN 595 >gi|257439785|ref|ZP_05615540.1| DNA ligase, NAD-dependent [Faecalibacterium prausnitzii A2-165] gi|257197805|gb|EEU96089.1| DNA ligase, NAD-dependent [Faecalibacterium prausnitzii A2-165] Length = 449 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I IG LL + FG+++ I ++ E + I+G +A + F K+ Sbjct: 293 GIRNIGDKAAALLAEHFGSLQAIREATEEQIGEIDGFGGVMAQSVTEFFAKD 344 >gi|27363688|ref|NP_759216.1| NAD-dependent DNA ligase LigA [Vibrio vulnificus CMCP6] gi|81449211|sp|Q8DFK5|DNLJ_VIBVU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|27359804|gb|AAO08743.1| DNA ligase, NAD-dependent [Vibrio vulnificus CMCP6] Length = 669 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 22/51 (43%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 +G L + F T++ I ++ E L + I + +A I F + + Sbjct: 521 VGEATAANLARHFKTLEAIQTATHEQLIEVPDIGEVVARHITAFFAEEKNQ 571 >gi|37679166|ref|NP_933775.1| NAD-dependent DNA ligase LigA [Vibrio vulnificus YJ016] gi|81758078|sp|Q7MMT5|DNLJ_VIBVY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|37197908|dbj|BAC93746.1| NAD-dependent DNA ligase [Vibrio vulnificus YJ016] Length = 669 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 22/51 (43%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 +G L + F T++ I ++ E L + I + +A I F + + Sbjct: 521 VGEATAANLARHFKTLEAIQTATHEQLIEVPDIGEVVARHITAFFAEEKNQ 571 >gi|15669699|ref|NP_248512.1| Hef nuclease [Methanocaldococcus jannaschii DSM 2661] gi|3915469|sp|Q58900|Y1505_METJA RecName: Full=Putative ATP-dependent RNA helicase MJ1505 gi|2826423|gb|AAB99518.1| ATP dependent RNA helicase, putative [Methanocaldococcus jannaschii DSM 2661] Length = 778 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 24/50 (48%) Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + + +G LL+ F TV+ + + E L +EG+ K+ A KI Sbjct: 723 ESLPDVGGALAERLLKHFKTVENVFTAKEEELMKVEGVGKERAKKIREVL 772 >gi|194333226|ref|YP_002015086.1| DNA protecting protein DprA [Prosthecochloris aestuarii DSM 271] gi|194311044|gb|ACF45439.1| DNA protecting protein DprA [Prosthecochloris aestuarii DSM 271] Length = 382 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 23/50 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I GIGP R + LLQ G+ + L GI +A KI + FH Sbjct: 22 GIEGIGPARIKALLQQAGSPSNVLALPKWKLEETRGIGAALAEKITSFFH 71 >gi|332291077|ref|YP_004429686.1| DNA ligase, NAD-dependent [Krokinobacter diaphorus 4H-3-7-5] gi|332169163|gb|AEE18418.1| DNA ligase, NAD-dependent [Krokinobacter diaphorus 4H-3-7-5] Length = 664 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G + L + + ++ I ++ E L +++ I KIA + F K T Sbjct: 514 VGETVAKKLAKHYKSIDAIISATEEELVAVDEIGSKIAESVMAFFAKAEHIT 565 >gi|320094066|ref|ZP_08025884.1| NAD-dependent DNA ligase LigA [Actinomyces sp. oral taxon 178 str. F0338] gi|319979007|gb|EFW10532.1| NAD-dependent DNA ligase LigA [Actinomyces sp. oral taxon 178 str. F0338] Length = 776 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 25/49 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG++ + + E LA+++G+ IA + + F Sbjct: 617 SIRHVGPTAARALAARFGSMDALRAADVEELAAVDGVGGVIAQSLADWF 665 >gi|2127880|pir||H64487 eIF-4A family probable ATP-dependent RNA helicase homolog - Methanococcus jannaschii Length = 784 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 24/50 (48%) Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + + +G LL+ F TV+ + + E L +EG+ K+ A KI Sbjct: 729 ESLPDVGGALAERLLKHFKTVENVFTAKEEELMKVEGVGKERAKKIREVL 778 >gi|296242076|ref|YP_003649563.1| ERCC4 domain-containing protein [Thermosphaera aggregans DSM 11486] gi|296094660|gb|ADG90611.1| ERCC4 domain protein [Thermosphaera aggregans DSM 11486] Length = 243 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 28/47 (59%) Query: 564 GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 GP+ R LL++F T+K ++ +S L +E I +K A +I+ F+ Sbjct: 189 GPVIGRKLLKTFKTLKNLANASISELLRVESIGEKRAEEIFLIFNSE 235 >gi|319776649|ref|YP_004139137.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae F3047] gi|329124164|ref|ZP_08252711.1| NAD-dependent DNA ligase LigA [Haemophilus aegyptius ATCC 11116] gi|317451240|emb|CBY87473.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae F3047] gi|327467589|gb|EGF13087.1| NAD-dependent DNA ligase LigA [Haemophilus aegyptius ATCC 11116] Length = 670 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 21/47 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L F T+ + ++ E L + + + +A +I+ + + Sbjct: 521 VGEATALNLANHFKTLDALKDANLEELQQVPDVGEVVANRIFIFWRE 567 >gi|319897423|ref|YP_004135620.1| DNA ligase, nad(+)-dependent [Haemophilus influenzae F3031] gi|317432929|emb|CBY81295.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae F3031] Length = 679 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 21/47 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L F T+ + ++ E L + + + +A +I+ + + Sbjct: 530 VGEATALNLANHFKTLDALKDANLEELQQVPDVGEVVANRIFIFWRE 576 >gi|229846132|ref|ZP_04466244.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 7P49H1] gi|229811136|gb|EEP46853.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 7P49H1] Length = 670 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 21/47 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L F T+ + ++ E L + + + +A +I+ + + Sbjct: 521 VGEATALNLANHFKTLDALKDANLEELQQVPDVGEVVANRIFIFWRE 567 >gi|237747723|ref|ZP_04578203.1| DNA ligase [Oxalobacter formigenes OXCC13] gi|229379085|gb|EEO29176.1| DNA ligase [Oxalobacter formigenes OXCC13] Length = 685 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 3/63 (4%) Query: 548 RRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 + KK ++ I +G R L FG + + ++S E L + I +A I Sbjct: 513 KSKKTTFARFLYALGIRHVGEATARALAGYFGNLANLRQASEEQLLEVADIGPIVAASIK 572 Query: 605 NHF 607 F Sbjct: 573 QFF 575 >gi|148828262|ref|YP_001293015.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittGG] gi|166215779|sp|A5UIM6|DNLJ_HAEIG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|148719504|gb|ABR00632.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittGG] Length = 670 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 21/47 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L F T+ + ++ E L + + + +A +I+ + + Sbjct: 521 VGEATALNLANHFKTLDALKDANLEELQQVPDVGEVVANRIFIFWRE 567 >gi|148826285|ref|YP_001291038.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittEE] gi|166215778|sp|A5UD04|DNLJ_HAEIE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|148716445|gb|ABQ98655.1| DNA ligase [Haemophilus influenzae PittEE] Length = 670 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 21/47 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L F T+ + ++ E L + + + +A +I+ + + Sbjct: 521 VGEATALNLANHFKTLDALKDANLEELQQVPDVGEVVANRIFIFWRE 567 >gi|145636448|ref|ZP_01792116.1| DNA ligase [Haemophilus influenzae PittHH] gi|145270273|gb|EDK10208.1| DNA ligase [Haemophilus influenzae PittHH] Length = 670 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 21/47 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L F T+ + ++ E L + + + +A +I+ + + Sbjct: 521 VGEATALNLANHFKTLDALKDANLEELQQVPDVGEVVANRIFIFWRE 567 >gi|145634259|ref|ZP_01789970.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittAA] gi|145268703|gb|EDK08696.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittAA] Length = 670 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 21/47 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L F T+ + ++ E L + + + +A +I+ + + Sbjct: 521 VGEATALNLANHFKTLDALKDANLEELQQVPDVGEVVANRIFIFWRE 567 >gi|145627934|ref|ZP_01783735.1| DNA ligase [Haemophilus influenzae 22.1-21] gi|144979709|gb|EDJ89368.1| DNA ligase [Haemophilus influenzae 22.1-21] Length = 346 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 21/47 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L F T+ + ++ E L + + + +A +I+ + + Sbjct: 197 VGEATALNLANHFKTLDALKDANLEELQQVPDVGEVVANRIFIFWRE 243 >gi|260580185|ref|ZP_05848015.1| DNA ligase, NAD-dependent [Haemophilus influenzae RdAW] gi|1574651|gb|AAC22753.1| DNA ligase (lig) [Haemophilus influenzae Rd KW20] gi|260093469|gb|EEW77402.1| DNA ligase, NAD-dependent [Haemophilus influenzae RdAW] Length = 679 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 21/47 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L F T+ + ++ E L + + + +A +I+ + + Sbjct: 530 VGEATALNLANHFKTLDALKDANLEELQQVPDVGEVVANRIFIFWRE 576 >gi|30995424|ref|NP_439257.2| NAD-dependent DNA ligase LigA [Haemophilus influenzae Rd KW20] gi|145638086|ref|ZP_01793696.1| DNA ligase [Haemophilus influenzae PittII] gi|166214918|sp|P43813|DNLJ_HAEIN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|145272415|gb|EDK12322.1| DNA ligase [Haemophilus influenzae PittII] gi|309751252|gb|ADO81236.1| NAD-dependent DNA ligase [Haemophilus influenzae R2866] Length = 670 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 21/47 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L F T+ + ++ E L + + + +A +I+ + + Sbjct: 521 VGEATALNLANHFKTLDALKDANLEELQQVPDVGEVVANRIFIFWRE 567 >gi|253680829|ref|ZP_04861632.1| DNA ligase, NAD-dependent [Clostridium botulinum D str. 1873] gi|253562678|gb|EES92124.1| DNA ligase, NAD-dependent [Clostridium botulinum D str. 1873] Length = 664 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G L + F T++ + ++ L +IE I + +A I F +T Sbjct: 513 GIPNVGKKTSIDLCRKFKTLQKLKSATFHDLIAIEDIGEIVAESIIEFFKDDT 565 >gi|187251076|ref|YP_001875558.1| transcription termination factor [Elusimicrobium minutum Pei191] gi|186971236|gb|ACC98221.1| Transcription termination factor [Elusimicrobium minutum Pei191] Length = 463 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605 S L + GIGP L+++ F +V+ I+ PE LA+++GI +K A KI Sbjct: 382 NLESLLASVEGIGPKTAETLVKAGFSSVEKIAALEPEHLATVQGIGEKSAAKIIE 436 >gi|154687371|ref|YP_001422532.1| YurQ [Bacillus amyloliquefaciens FZB42] gi|154353222|gb|ABS75301.1| YurQ [Bacillus amyloliquefaciens FZB42] Length = 124 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G++ +I +L+VGKA L++RIK + N + ++ I V +E Sbjct: 45 GIFMFYNIHDELLFVGKARKLRQRIKKHFEDNVSPVKHHR--DEVYKIEVCVVNDPMERE 102 Query: 71 LLEANMIKRLKPRFNI 86 + E I L+ ++NI Sbjct: 103 IYETYAINTLQSKYNI 118 >gi|332880187|ref|ZP_08447868.1| DNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681836|gb|EGJ54752.1| DNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 670 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + + L + F ++ ++ +S E + I GI IA + +F + Sbjct: 519 VGEIAAKALARHFKSMDALASASLEDMLQINGIGVVIAESVIRYFANEAN 568 >gi|269958959|ref|YP_003328748.1| uvrC domain containing protein [Anaplasma centrale str. Israel] gi|269848790|gb|ACZ49434.1| uvrC domain containing protein [Anaplasma centrale str. Israel] Length = 87 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 16/24 (66%), Positives = 19/24 (79%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKR 34 GVY+ML G VLYVGKA +L+KR Sbjct: 32 GVYKMLGANGLVLYVGKAKDLKKR 55 >gi|262042032|ref|ZP_06015211.1| DNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040623|gb|EEW41715.1| DNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 671 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + ++S E L + + +A +N F + ++ Sbjct: 520 VGEATAAGLAAHFGTLEALEQASIEELQKVPDVGIVVAAHTFNFFAEESN 569 >gi|283786048|ref|YP_003365913.1| DNA ligase [Citrobacter rodentium ICC168] gi|282949502|emb|CBG89116.1| DNA ligase [Citrobacter rodentium ICC168] Length = 671 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAFFGTLEALEAASIEELQKVPDVGIVVATHVFNFFAEESN 569 >gi|332970057|gb|EGK09055.1| NAD-dependent DNA ligase LigA [Desmospora sp. 8437] Length = 670 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 24/47 (51%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G +L Q FG ++ I + E L +++ I K+A I +F K Sbjct: 517 VGAKGALILAQHFGGLEAIMAADREELEAVDEIGPKMAESIETYFDK 563 >gi|323226774|gb|EGA10965.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] Length = 338 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + ++ + L + + +A ++N F + ++ Sbjct: 187 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 236 >gi|322613832|gb|EFY10771.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617441|gb|EFY14340.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624929|gb|EFY21758.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629628|gb|EFY26404.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633942|gb|EFY30679.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635621|gb|EFY32332.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639981|gb|EFY36651.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644326|gb|EFY40867.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322655311|gb|EFY51620.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658357|gb|EFY54623.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664357|gb|EFY60554.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668412|gb|EFY64568.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673252|gb|EFY69358.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676644|gb|EFY72712.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683394|gb|EFY79408.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685720|gb|EFY81713.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192602|gb|EFZ77831.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196835|gb|EFZ81978.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202141|gb|EFZ87199.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208024|gb|EFZ92969.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212850|gb|EFZ97659.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217119|gb|EGA01841.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219619|gb|EGA04102.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323229192|gb|EGA13316.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235493|gb|EGA19577.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237321|gb|EGA21384.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245552|gb|EGA29550.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248968|gb|EGA32891.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253065|gb|EGA36897.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255865|gb|EGA39610.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261411|gb|EGA44996.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266454|gb|EGA49942.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269716|gb|EGA53166.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 671 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + ++ + L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 569 >gi|238912842|ref|ZP_04656679.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 671 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + ++ + L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 569 >gi|289804564|ref|ZP_06535193.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 551 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + ++ + L + + +A ++N F + ++ Sbjct: 409 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 458 >gi|224583040|ref|YP_002636838.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|254781413|sp|C0PZB4|DNLJ_SALPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|224467567|gb|ACN45397.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 671 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + ++ + L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 569 >gi|213618983|ref|ZP_03372809.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 544 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + ++ + L + + +A ++N F + ++ Sbjct: 468 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 517 >gi|213419664|ref|ZP_03352730.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 190 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + ++ + L + + +A ++N F + ++ Sbjct: 39 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 88 >gi|168817829|ref|ZP_02829829.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205345161|gb|EDZ31925.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320086917|emb|CBY96687.1| DNA ligase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 671 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + ++ + L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 569 >gi|200388789|ref|ZP_03215401.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199605887|gb|EDZ04432.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 671 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + ++ + L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 569 >gi|168466836|ref|ZP_02700690.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195630762|gb|EDX49354.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 671 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + ++ + L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 569 >gi|168261543|ref|ZP_02683516.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205349337|gb|EDZ35968.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 671 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + ++ + L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 569 >gi|194444893|ref|YP_002041687.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|254781412|sp|B4SZU5|DNLJ_SALNS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|194403556|gb|ACF63778.1| DNA ligase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 671 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + ++ + L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 569 >gi|204929538|ref|ZP_03220612.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321257|gb|EDZ06457.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 671 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + ++ + L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 569 >gi|197247622|ref|YP_002147380.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|254781407|sp|B5F0F5|DNLJ_SALA4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|197211325|gb|ACH48722.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 671 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + ++ + L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 569 >gi|168238909|ref|ZP_02663967.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734182|ref|YP_002115493.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|254781415|sp|B4TQF8|DNLJ_SALSV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|194709684|gb|ACF88905.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288317|gb|EDY27698.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 671 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + ++ + L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 569 >gi|168231967|ref|ZP_02657025.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471791|ref|ZP_03077775.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194458155|gb|EDX46994.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205333574|gb|EDZ20338.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 671 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + ++ + L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 569 >gi|161612830|ref|YP_001586795.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|190359282|sp|A9N362|DNLJ_SALPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|161362194|gb|ABX65962.1| hypothetical protein SPAB_00529 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 671 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + ++ + L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 569 >gi|56412686|ref|YP_149761.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361620|ref|YP_002141256.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|81362021|sp|Q5PNE2|DNLJ_SALPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781414|sp|B5BB72|DNLJ_SALPK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|56126943|gb|AAV76449.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093096|emb|CAR58535.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 671 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + ++ + L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 569 >gi|16765747|ref|NP_461362.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167991721|ref|ZP_02572820.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|197262860|ref|ZP_03162934.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|81522316|sp|Q8ZN89|DNLJ_SALTY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|16420966|gb|AAL21321.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197241115|gb|EDY23735.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205329843|gb|EDZ16607.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261247627|emb|CBG25454.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994529|gb|ACY89414.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158979|emb|CBW18492.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913414|dbj|BAJ37388.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222873|gb|EFX47944.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130756|gb|ADX18186.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332989355|gb|AEF08338.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 671 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + ++ + L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 569 >gi|29140957|ref|NP_804299.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213160907|ref|ZP_03346617.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424270|ref|ZP_03357114.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213583650|ref|ZP_03365476.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213650852|ref|ZP_03380905.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|29136582|gb|AAO68148.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 671 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + ++ + L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 569 >gi|16761347|ref|NP_456964.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|81513487|sp|Q8Z4W4|DNLJ_SALTI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|25294013|pir||AI0809 DNA ligase (NAD) (EC 6.5.1.2) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503646|emb|CAD07659.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhi] Length = 671 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + ++ + L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 569 >gi|124027717|ref|YP_001013037.1| ERCC4-type nuclease [Hyperthermus butylicus DSM 5456] gi|123978411|gb|ABM80692.1| predicted ERCC4-type nuclease [Hyperthermus butylicus DSM 5456] Length = 223 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 + GIGP LL+ FG+++ I R+S L + G + + K+Y H Sbjct: 165 SLPGIGPRLAERLLEKFGSIEAICRASIVELEKVLGYERAV--KVYRVIH 212 >gi|293395040|ref|ZP_06639327.1| DNA ligase [Serratia odorifera DSM 4582] gi|291422447|gb|EFE95689.1| DNA ligase [Serratia odorifera DSM 4582] Length = 673 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 20/47 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L FG++ + + E L + + + +A + N F + Sbjct: 520 VGESTAANLAAHFGSLDKLRAADVEALKQVPDVGEVVAKHVVNFFAE 566 >gi|270290149|ref|ZP_06196375.1| DNA ligase, NAD-dependent [Pediococcus acidilactici 7_4] gi|270281686|gb|EFA27518.1| DNA ligase, NAD-dependent [Pediococcus acidilactici 7_4] Length = 675 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 AI R+ + + L I G+G R L ++FG++ + +S E +++ + + +A Sbjct: 503 AIDRSRQNSLERLVNGL-GIQGVGTKMARTLAEAFGSMDRLMEASVEEFDAVDTVGETLA 561 Query: 601 CKIYNHFHKNTS 612 + F + Sbjct: 562 NNLATFFQSEAA 573 >gi|312898543|ref|ZP_07757933.1| DNA ligase, NAD-dependent [Megasphaera micronuciformis F0359] gi|310620462|gb|EFQ04032.1| DNA ligase, NAD-dependent [Megasphaera micronuciformis F0359] Length = 672 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 27/50 (54%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G R+L + FG+V+ ++ +S E L I+ I +IA ++ + + Sbjct: 517 VGAKAARILAEHFGSVEALAAASTEELTDIDEIGPRIAESVHTWIRTDEA 566 >gi|321442676|gb|EFX59863.1| hypothetical protein DAPPUDRAFT_346733 [Daphnia pulex] Length = 276 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 7/92 (7%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKR-----IKSYMHS--NNHTHRITHMISQI 55 + +P PGVY + + +YVG + L+ R + + N++ +++ + Sbjct: 17 LDDVPNSPGVYVVFNQQNEAVYVGDSVKLKTRWYAGHLNEHTQGQRNDNPYKLADEFQEG 76 Query: 56 NNIRFTVTCTEVEALLLEANMIKRLKPRFNIL 87 +RF +E A +EA++I KP+ N Sbjct: 77 CTVRFVSMESEATAAAVEAHLIATEKPKKNSR 108 >gi|241764431|ref|ZP_04762455.1| DNA ligase, NAD-dependent [Acidovorax delafieldii 2AN] gi|241366173|gb|EER60750.1| DNA ligase, NAD-dependent [Acidovorax delafieldii 2AN] Length = 697 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 6/63 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I +G + L + FG + I ++ E L ++ + +A I+ Sbjct: 526 KSKQTTLPRFLFALGIRHVGEATAKDLARHFGVLDAIMDATEEQLLAVNDVGPVVAKAIH 585 Query: 605 NHF 607 F Sbjct: 586 TFF 588 >gi|134094553|ref|YP_001099628.1| DNA ligase [Herminiimonas arsenicoxydans] gi|166215813|sp|A4G4R4|DNLJ_HERAR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|133738456|emb|CAL61501.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Herminiimonas arsenicoxydans] Length = 696 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 6/63 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I +G + L + FG + + ++SPE L + I +A I Sbjct: 526 KSKRTTLARFIYALGIRHVGEATAKELARHFGNLDALLQASPEQLLEVADIGPVVAASIT 585 Query: 605 NHF 607 F Sbjct: 586 AFF 588 >gi|323359739|ref|YP_004226135.1| NAD-dependent DNA ligase [Microbacterium testaceum StLB037] gi|323276110|dbj|BAJ76255.1| NAD-dependent DNA ligase [Microbacterium testaceum StLB037] Length = 810 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF----HKNTSHT 614 I +GP+ R L Q FG++ I ++ E LA++EG+ IA + + F H+ T Sbjct: 628 NIRHVGPVAARALAQWFGSLDAIRAATREELAAVEGVGGIIADAVIDWFEVDWHREIVET 687 >gi|256425884|ref|YP_003126537.1| DNA protecting protein DprA [Chitinophaga pinensis DSM 2588] gi|256040792|gb|ACU64336.1| DNA protecting protein DprA [Chitinophaga pinensis DSM 2588] Length = 378 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 23/51 (45%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 L +I IG + + LL FG+ + +S + L +I I A I+ Sbjct: 18 ALTQIPQIGDIVAKKLLAHFGSASEVLNASRKELGNIPDIGIVRADAIFQF 68 >gi|311740579|ref|ZP_07714406.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudogenitalium ATCC 33035] gi|311304099|gb|EFQ80175.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudogenitalium ATCC 33035] Length = 689 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 25/86 (29%) Query: 547 KRRKK-----------AAYSPLDEING--------------IGPLRKRLLLQSFGTVKMI 581 KR KK S L+E+ G +GP+ R L +G++ + Sbjct: 497 KRSKKEGNAKVNTAGQNLLSNLEEVKGRDFWRVLVSLSIRHVGPIAARALASRYGSMDRL 556 Query: 582 SRSSPETLASIEGISKKIACKIYNHF 607 + E LA ++G+ IA ++ F Sbjct: 557 RAAKTEELAEVDGVGMTIAQSFHDWF 582 >gi|294790698|ref|ZP_06755856.1| DNA ligase, NAD-dependent [Scardovia inopinata F0304] gi|294458595|gb|EFG26948.1| DNA ligase, NAD-dependent [Scardovia inopinata F0304] Length = 815 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 28/49 (57%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G RLL + F T++ +S++S E L ++G+ ++IA I F Sbjct: 652 SIRHVGAPTARLLSRKFKTLQALSQASVEDLLQVDGVGEEIAQSIERWF 700 >gi|197117724|ref|YP_002138151.1| NAD-dependent DNA ligase [Geobacter bemidjiensis Bem] gi|254781337|sp|B5EIJ0|DNLJ_GEOBB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|197087084|gb|ACH38355.1| DNA ligase, NAD-dependent [Geobacter bemidjiensis Bem] Length = 668 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 3/66 (4%) Query: 550 KKAAYSPL---DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 K+ S L I +G +LL +FG+++ ++ +S E L SI + ++A I + Sbjct: 506 KERELSRLIFALGIRHVGEHTAKLLASAFGSMENLAAASEEELTSIREVGPQVAASIADF 565 Query: 607 FHKNTS 612 F + Sbjct: 566 FKSEEN 571 >gi|309799921|ref|ZP_07694125.1| UvrABC system protein C [Streptococcus infantis SK1302] gi|308116448|gb|EFO53920.1| UvrABC system protein C [Streptococcus infantis SK1302] Length = 38 Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 15/28 (53%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAY 29 E +P PG Y D G ++YVGKA Sbjct: 8 KLELLPTSPGCYIHKDKNGTIIYVGKAK 35 >gi|289192001|ref|YP_003457942.1| helicase domain protein [Methanocaldococcus sp. FS406-22] gi|288938451|gb|ADC69206.1| helicase domain protein [Methanocaldococcus sp. FS406-22] Length = 783 Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 24/50 (48%) Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + + +G LL+ F TV+ + + E L +EG+ K+ A KI Sbjct: 728 ESLPDVGGALAERLLKHFKTVERVFTAKEEELMKVEGVGKERAKKIREVL 777 >gi|332290231|ref|YP_004421083.1| NAD-dependent DNA ligase LigA [Gallibacterium anatis UMN179] gi|330433127|gb|AEC18186.1| NAD-dependent DNA ligase LigA [Gallibacterium anatis UMN179] Length = 671 Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 6/65 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA + L I +G R L F T++ I ++ E L ++ I + +A +I Sbjct: 503 KAKKTTLARFLFALGIREVGEATARNLANHFHTLENIKNATFEQLQQVQDIGEVVANRII 562 Query: 605 NHFHK 609 + + Sbjct: 563 LFWQE 567 >gi|326381521|ref|ZP_08203215.1| NAD-dependent DNA ligase LigA [Gordonia neofelifaecis NRRL B-59395] gi|326199768|gb|EGD56948.1| NAD-dependent DNA ligase LigA [Gordonia neofelifaecis NRRL B-59395] Length = 692 Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L +FG ++ I +S E LA ++G+ A +++ F Sbjct: 529 SIRHVGPTPARALATAFGDLEAIQAASVEDLAQVDGLGPTRAASVHDWF 577 >gi|262379150|ref|ZP_06072306.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SH164] gi|262298607|gb|EEY86520.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SH164] Length = 682 Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 25/52 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I G+G R+L SF T++ + ++ ++L + + A IY+ F Sbjct: 526 GIRGVGETTARMLANSFQTLEALQQADVDSLKKVPDVGDITAEWIYDFFRAE 577 >gi|255318624|ref|ZP_05359855.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SK82] gi|255304306|gb|EET83492.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SK82] Length = 678 Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 25/52 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I G+G R+L SF T++ + ++ ++L + + A IY+ F Sbjct: 522 GIRGVGETTARMLANSFQTLEALQQADVDSLKKVPDVGDITAEWIYDFFRAE 573 >gi|124302218|gb|ABN05294.1| DNA ligase [Geobacillus sp. g] Length = 670 Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF-HKNTSH 613 +G +LL + F T++ + +++ E L ++ I +K+A I F + Sbjct: 514 VGAKAAQLLAEHFETMERLEKATKEELMAVPEIGEKMAGSIIAFFSQPEAAE 565 >gi|332141274|ref|YP_004427012.1| DNA ligase, NAD-dependent [Alteromonas macleodii str. 'Deep ecotype'] gi|327551296|gb|AEA98014.1| DNA ligase, NAD-dependent [Alteromonas macleodii str. 'Deep ecotype'] Length = 517 Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 24/48 (50%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +G L F T+ I +S E L ++ + + +A I+N F+++ Sbjct: 365 VGEATAANLAAHFETLDAIRDASIEALVEVQDVGEIVATHIFNFFNES 412 >gi|312140511|ref|YP_004007847.1| DNA ligase (nad+) liga [Rhodococcus equi 103S] gi|311889850|emb|CBH49167.1| DNA ligase (NAD+) LigA [Rhodococcus equi 103S] Length = 712 Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 25/49 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG+++ I + E LA+++G+ IA + F Sbjct: 555 SIRHVGPTAARALASEFGSLERIENAGVEELAAVDGVGGTIAAAVVAWF 603 >gi|325675870|ref|ZP_08155554.1| DNA ligase [Rhodococcus equi ATCC 33707] gi|325553841|gb|EGD23519.1| DNA ligase [Rhodococcus equi ATCC 33707] Length = 711 Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 25/49 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG+++ I + E LA+++G+ IA + F Sbjct: 554 SIRHVGPTAARALASEFGSLERIENAGVEELAAVDGVGGTIAAAVVAWF 602 >gi|225377122|ref|ZP_03754343.1| hypothetical protein ROSEINA2194_02767 [Roseburia inulinivorans DSM 16841] gi|225211027|gb|EEG93381.1| hypothetical protein ROSEINA2194_02767 [Roseburia inulinivorans DSM 16841] Length = 668 Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 21/49 (42%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G + +++ F + + +S E L + I + A I N F Sbjct: 516 GIPNVGKAAAKAIMKYFKDMDHLKEASVEQLTEVNDIGEVSALCIRNFF 564 >gi|159897339|ref|YP_001543586.1| DNA ligase, NAD-dependent [Herpetosiphon aurantiacus ATCC 23779] gi|254781348|sp|A9AXP4|DNLJ_HERA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|159890378|gb|ABX03458.1| DNA ligase, NAD-dependent [Herpetosiphon aurantiacus ATCC 23779] Length = 673 Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 12/68 (17%) Query: 547 KRRKKAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 KRR PLD ING+G + L + F ++ +++++ E L +IEGI A Sbjct: 507 KRR------PLDRVITALGINGVGTVAAADLARYFRSLPALAQATIEQLTAIEGIGGSTA 560 Query: 601 CKIYNHFH 608 + + F+ Sbjct: 561 QSVVDFFN 568 >gi|255013963|ref|ZP_05286089.1| DNA ligase [Bacteroides sp. 2_1_7] gi|301310547|ref|ZP_07216486.1| DNA ligase, NAD-dependent [Bacteroides sp. 20_3] gi|300832121|gb|EFK62752.1| DNA ligase, NAD-dependent [Bacteroides sp. 20_3] Length = 664 Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 37/81 (45%), Gaps = 14/81 (17%) Query: 548 RRKKAAYSPLDE--------------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 + + S L+E I +G + L+ +F +++ + ++S E L +++ Sbjct: 485 KSARNLMSSLEESKQVPFERVLFGLGIRFVGETVAKRLVSAFHSIEALEQASLEDLVAVD 544 Query: 594 GISKKIACKIYNHFHKNTSHT 614 I ++IA + ++F + T Sbjct: 545 EIGERIAQSVLSYFSDEKNRT 565 >gi|228921377|ref|ZP_04084701.1| hypothetical protein bthur0011_23800 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838322|gb|EEM83639.1| hypothetical protein bthur0011_23800 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 126 Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G++ +I +L+VGKA +++RIK + N + ++ I + E Sbjct: 47 GIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSPIKNHR--DEVYRIDACIVEDPTERE 104 Query: 71 LLEANMIKRLKPRFNI 86 + E +I K ++N+ Sbjct: 105 IYETYIINEYKAKYNV 120 >gi|218897722|ref|YP_002446133.1| GIY-YIG catalytic domain protein [Bacillus cereus G9842] gi|228905631|ref|ZP_04069560.1| hypothetical protein bthur0014_66760 [Bacillus thuringiensis IBL 4222] gi|228939821|ref|ZP_04102398.1| hypothetical protein bthur0008_24740 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228965641|ref|ZP_04126722.1| hypothetical protein bthur0004_24670 [Bacillus thuringiensis serovar sotto str. T04001] gi|228972710|ref|ZP_04133309.1| hypothetical protein bthur0003_24770 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979294|ref|ZP_04139631.1| hypothetical protein bthur0002_24770 [Bacillus thuringiensis Bt407] gi|218542741|gb|ACK95135.1| GIY-YIG catalytic domain protein [Bacillus cereus G9842] gi|228780402|gb|EEM28632.1| hypothetical protein bthur0002_24770 [Bacillus thuringiensis Bt407] gi|228786925|gb|EEM34905.1| hypothetical protein bthur0003_24770 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228794049|gb|EEM41571.1| hypothetical protein bthur0004_24670 [Bacillus thuringiensis serovar sotto str. T04001] gi|228819752|gb|EEM65800.1| hypothetical protein bthur0008_24740 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228854000|gb|EEM98729.1| hypothetical protein bthur0014_66760 [Bacillus thuringiensis IBL 4222] gi|326940471|gb|AEA16367.1| UvrC-like protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 126 Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G++ +I +L+VGKA +++RIK + N + ++ I + E Sbjct: 47 GIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSPIKNHR--DEVYRIDACIVEDPTERE 104 Query: 71 LLEANMIKRLKPRFNI 86 + E +I K ++N+ Sbjct: 105 IYETYIINEYKAKYNV 120 >gi|240168924|ref|ZP_04747583.1| NAD-dependent DNA ligase LigA [Mycobacterium kansasii ATCC 12478] Length = 683 Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 27/49 (55%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FGT++ I+ +S E LA++EG+ IA + F Sbjct: 521 SIRHVGPTAARALATEFGTLEAIANASTEQLAAVEGVGPTIAAAVSEWF 569 >gi|55379328|ref|YP_137178.1| Hef nuclease [Haloarcula marismortui ATCC 43049] gi|55232053|gb|AAV47472.1| ATP-dependent RNA helicase homolog eIF-4A [Haloarcula marismortui ATCC 43049] Length = 852 Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 24/43 (55%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 +GP+ R LL+SFG+V+ + + + L + GI A +I Sbjct: 802 VGPVTARTLLESFGSVEAVMTADKDDLLEVSGIGDVTADRIRE 844 >gi|296046593|gb|ADG86438.1| NAD-dependent DNA ligase [synthetic construct] Length = 689 Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 21/48 (43%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +G L F T+ I +S E L ++ + + +A I N F + Sbjct: 536 VGEATAANLANHFYTLAAIESASLEDLQNVSDVGEVVAKNIINFFKEE 583 >gi|296046569|gb|ADG86426.1| NAD-dependent DNA ligase [Francisella novicida] Length = 689 Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 21/48 (43%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +G L F T+ I +S E L ++ + + +A I N F + Sbjct: 536 VGEATAANLANHFYTLAAIESASLEDLQNVSDVGEVVAKNIINFFKEE 583 >gi|71281008|ref|YP_270140.1| DNA ligase, NAD-dependent [Colwellia psychrerythraea 34H] gi|123774873|sp|Q47YI0|DNLJ_COLP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|71146748|gb|AAZ27221.1| DNA ligase, NAD-dependent [Colwellia psychrerythraea 34H] Length = 689 Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 21/48 (43%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +G L F T+ I +S E L ++ + + +A I N F + Sbjct: 536 VGEATAANLANHFYTLAAIESASLEDLQNVSDVGEVVAKNIINFFKEE 583 >gi|30262683|ref|NP_845060.1| endo/excinuclease amino terminal domain-containing protein [Bacillus anthracis str. Ames] gi|42781791|ref|NP_979038.1| endo/excinuclease amino terminal domain-containing protein [Bacillus cereus ATCC 10987] gi|47527998|ref|YP_019347.1| endo/excinuclease amino terminal domain-containing protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49185529|ref|YP_028781.1| endo/excinuclease amino terminal domain-containing protein [Bacillus anthracis str. Sterne] gi|49481678|ref|YP_036807.1| excinuclease ABC, C subunit, N-terminal region [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52142795|ref|YP_084035.1| excinuclease ABC, C subunit, N-terminal region [Bacillus cereus E33L] gi|65320010|ref|ZP_00392969.1| COG0322: Nuclease subunit of the excinuclease complex [Bacillus anthracis str. A2012] gi|118478080|ref|YP_895231.1| excinuclease ABC, C subunit, N-terminal region [Bacillus thuringiensis str. Al Hakam] gi|190565332|ref|ZP_03018252.1| GIY-YIG catalytic domain [Bacillus anthracis Tsiankovskii-I] gi|196032561|ref|ZP_03099975.1| GIY-YIG catalytic domain protein [Bacillus cereus W] gi|196042253|ref|ZP_03109533.1| GIY-YIG catalytic domain protein [Bacillus cereus NVH0597-99] gi|196043368|ref|ZP_03110606.1| GIY-YIG catalytic domain [Bacillus cereus 03BB108] gi|206973526|ref|ZP_03234444.1| GIY-YIG catalytic domain protein [Bacillus cereus H3081.97] gi|217960161|ref|YP_002338721.1| GIY-YIG catalytic domain protein [Bacillus cereus AH187] gi|222096223|ref|YP_002530280.1| excinuclease abc, c subunit, n-terminal region [Bacillus cereus Q1] gi|225864688|ref|YP_002750066.1| GIY-YIG catalytic domain protein [Bacillus cereus 03BB102] gi|227814481|ref|YP_002814490.1| GIY-YIG catalytic domain protein [Bacillus anthracis str. CDC 684] gi|228915318|ref|ZP_04078911.1| hypothetical protein bthur0012_25380 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229091715|ref|ZP_04222916.1| hypothetical protein bcere0021_25200 [Bacillus cereus Rock3-42] gi|229139354|ref|ZP_04267925.1| hypothetical protein bcere0013_24640 [Bacillus cereus BDRD-ST26] gi|229196886|ref|ZP_04323627.1| hypothetical protein bcere0001_24410 [Bacillus cereus m1293] gi|229602644|ref|YP_002866994.1| GIY-YIG catalytic domain protein [Bacillus anthracis str. A0248] gi|254685274|ref|ZP_05149134.1| GIY-YIG catalytic domain protein [Bacillus anthracis str. CNEVA-9066] gi|254722682|ref|ZP_05184470.1| GIY-YIG catalytic domain protein [Bacillus anthracis str. A1055] gi|254737727|ref|ZP_05195430.1| GIY-YIG catalytic domain protein [Bacillus anthracis str. Western North America USA6153] gi|254743096|ref|ZP_05200781.1| GIY-YIG catalytic domain protein [Bacillus anthracis str. Kruger B] gi|254752042|ref|ZP_05204079.1| GIY-YIG catalytic domain protein [Bacillus anthracis str. Vollum] gi|254760563|ref|ZP_05212587.1| GIY-YIG catalytic domain protein [Bacillus anthracis str. Australia 94] gi|301054235|ref|YP_003792446.1| excinuclease ABC subunit C N-terminal region [Bacillus anthracis CI] gi|30257315|gb|AAP26546.1| endo/excinuclease amino terminal domain protein [Bacillus anthracis str. Ames] gi|42737714|gb|AAS41646.1| endo/excinuclease amino terminal domain protein [Bacillus cereus ATCC 10987] gi|47503146|gb|AAT31822.1| GIY-YIG catalytic domain protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49179456|gb|AAT54832.1| endo/excinuclease amino terminal domain protein [Bacillus anthracis str. Sterne] gi|49333234|gb|AAT63880.1| excinuclease ABC, C subunit, N-terminal region [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51976264|gb|AAU17814.1| excinuclease ABC, C subunit, N-terminal region [Bacillus cereus E33L] gi|118417305|gb|ABK85724.1| excinuclease ABC, C subunit, N-terminal region [Bacillus thuringiensis str. Al Hakam] gi|190563359|gb|EDV17324.1| GIY-YIG catalytic domain [Bacillus anthracis Tsiankovskii-I] gi|195995312|gb|EDX59266.1| GIY-YIG catalytic domain protein [Bacillus cereus W] gi|196025677|gb|EDX64346.1| GIY-YIG catalytic domain [Bacillus cereus 03BB108] gi|196026926|gb|EDX65553.1| GIY-YIG catalytic domain protein [Bacillus cereus NVH0597-99] gi|206747682|gb|EDZ59071.1| GIY-YIG catalytic domain protein [Bacillus cereus H3081.97] gi|217065808|gb|ACJ80058.1| GIY-YIG catalytic domain protein [Bacillus cereus AH187] gi|221240281|gb|ACM12991.1| excinuclease ABC, C subunit, N-terminal region [Bacillus cereus Q1] gi|225790001|gb|ACO30218.1| GIY-YIG catalytic domain protein [Bacillus cereus 03BB102] gi|227006494|gb|ACP16237.1| GIY-YIG catalytic domain protein [Bacillus anthracis str. CDC 684] gi|228586609|gb|EEK44686.1| hypothetical protein bcere0001_24410 [Bacillus cereus m1293] gi|228643901|gb|EEL00162.1| hypothetical protein bcere0013_24640 [Bacillus cereus BDRD-ST26] gi|228691660|gb|EEL45412.1| hypothetical protein bcere0021_25200 [Bacillus cereus Rock3-42] gi|228844261|gb|EEM89319.1| hypothetical protein bthur0012_25380 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229267052|gb|ACQ48689.1| GIY-YIG catalytic domain protein [Bacillus anthracis str. A0248] gi|300376404|gb|ADK05308.1| excinuclease ABC, C subunit, N-terminal region [Bacillus cereus biovar anthracis str. CI] gi|324326683|gb|ADY21943.1| excinuclease ABC subunit C N-terminal protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 126 Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G++ +I +L+VGKA +++RIK + N + ++ I + E Sbjct: 47 GIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSPIKNHR--DEVYRIDACIVEDPTERE 104 Query: 71 LLEANMIKRLKPRFNI 86 + E +I K ++N+ Sbjct: 105 IYETYIINEYKAKYNV 120 >gi|329116783|ref|ZP_08245500.1| DNA ligase (NAD+) [Streptococcus parauberis NCFD 2020] gi|326907188|gb|EGE54102.1| DNA ligase (NAD+) [Streptococcus parauberis NCFD 2020] Length = 654 Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 7/76 (9%) Query: 541 AITTHRKRRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 AIT KK + L I +G R+LL+ FG ++ + ++ E ++ I+G+ Sbjct: 486 AITN----SKKNSADKLLFGLGIRHVGAKASRILLEEFGDIESLVEANQEEISQIDGLGT 541 Query: 598 KIACKIYNHFHKNTSH 613 IA I +F K + Sbjct: 542 VIAKSIARYFEKAEAQ 557 >gi|47570235|ref|ZP_00240887.1| UvrC-like protein [Bacillus cereus G9241] gi|228985809|ref|ZP_04145959.1| hypothetical protein bthur0001_24990 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229156297|ref|ZP_04284393.1| hypothetical protein bcere0010_24860 [Bacillus cereus ATCC 4342] gi|47553100|gb|EAL11499.1| UvrC-like protein [Bacillus cereus G9241] gi|228627172|gb|EEK83903.1| hypothetical protein bcere0010_24860 [Bacillus cereus ATCC 4342] gi|228773981|gb|EEM22397.1| hypothetical protein bthur0001_24990 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 126 Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G++ +I +L+VGKA +++RIK + N + ++ I + E Sbjct: 47 GIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSPIKNHR--DEVYRIDACIVEDPTERE 104 Query: 71 LLEANMIKRLKPRFNI 86 + E +I K ++N+ Sbjct: 105 IYETYIINEYKAKYNV 120 >gi|320334549|ref|YP_004171260.1| DNA ligase [Deinococcus maricopensis DSM 21211] gi|319755838|gb|ADV67595.1| DNA ligase [Deinococcus maricopensis DSM 21211] Length = 671 Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 29/51 (56%) Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 G+G ++L ++F ++ + ++PE +ASI G+ + +A ++ H T Sbjct: 515 PGVGERNAQVLTRAFPSLDALLAATPEQIASIHGVGETLAQSVHAALHDAT 565 >gi|297626017|ref|YP_003687780.1| DNA ligase (NAD+) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921782|emb|CBL56340.1| DNA ligase (NAD+) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 764 Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 23/49 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG++ I + E LA +G+ IA + + F Sbjct: 567 SIRHVGPTAARALAARFGSMDAIRAAGVEELADTDGVGLIIAEAVRDWF 615 >gi|126658956|ref|ZP_01730098.1| hypothetical protein CY0110_26677 [Cyanothece sp. CCY0110] gi|126619754|gb|EAZ90481.1| hypothetical protein CY0110_26677 [Cyanothece sp. CCY0110] Length = 92 Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 8/84 (9%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65 +P+ GVY+++D G ++YVG++ N+ +R + ++ +I I + Sbjct: 10 LPKVSGVYKVIDGQGTIIYVGQSKNIYRRWN---NGHHILPKIIRECGDNTLIDWVEVP- 65 Query: 66 EVEALL--LEANMIKRLKPRFNIL 87 E LL +E + +P+FN Sbjct: 66 --EWLLNRVENMTVSFYQPKFNRK 87 >gi|119356312|ref|YP_910956.1| DNA ligase, NAD-dependent [Chlorobium phaeobacteroides DSM 266] gi|166215573|sp|A1BDQ5|DNLJ_CHLPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|119353661|gb|ABL64532.1| DNA ligase, NAD-dependent [Chlorobium phaeobacteroides DSM 266] Length = 676 Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 14/99 (14%) Query: 527 LYFIQRLRDEA---------H---RFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQS 574 LY +Q+ + EA H R A+ R++ + L I +G R L ++ Sbjct: 483 LYLLQQPQLEALERMGRKSAHNLLR-ALQESREKSYERLLYAL-GIRHVGQATARELARA 540 Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 + TV+ + +S E LA++ + +A + ++F K+++ Sbjct: 541 YETVEALQNASEEELATVPDVGPVVAHSVKDYFSKSSTQ 579 >gi|320105506|ref|YP_004181096.1| NAD-dependent DNA ligase [Terriglobus saanensis SP1PR4] gi|319924027|gb|ADV81102.1| DNA ligase, NAD-dependent [Terriglobus saanensis SP1PR4] Length = 694 Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 17/80 (21%) Query: 550 KKAAYSPLDEIN--------------GI---GPLRKRLLLQSFGTVKMISRSSPETLASI 592 +K+A S L EI GI G + L + FG++ + ++ E L + Sbjct: 519 QKSAESLLAEIEKSKSAPLSRVLLGLGIRHVGERTAQTLAEEFGSMDALISATEEDLTRV 578 Query: 593 EGISKKIACKIYNHFHKNTS 612 + K+A I F + Sbjct: 579 NDVGPKVAEAIREWFANEKN 598 >gi|242398676|ref|YP_002994100.1| ATP-dependent RNA helicase, putative [Thermococcus sibiricus MM 739] gi|242265069|gb|ACS89751.1| ATP-dependent RNA helicase, putative [Thermococcus sibiricus MM 739] Length = 772 Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 29/109 (26%) Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556 IAK + E + +AL L R QRL Sbjct: 683 IAKREQEERKKEVAVRSEKKALTLADR-------QRL----------------------I 713 Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 ++ + + + R LL+ FG V+ + + L +EGI +KIA +I Sbjct: 714 VEGLPNVSAVLARRLLKHFGNVERVFTAKESELIQVEGIGEKIAKEIRR 762 >gi|228946324|ref|ZP_04108651.1| hypothetical protein bthur0007_24710 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228813374|gb|EEM59668.1| hypothetical protein bthur0007_24710 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 126 Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G++ +I +L+VGKA +++RIK + N + ++ I + E Sbjct: 47 GIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSPIKNHR--DEVYRIDACIVEDPTERE 104 Query: 71 LLEANMIKRLKPRFNI 86 + E +I K ++N+ Sbjct: 105 IYETYIINEYKAKYNV 120 >gi|15603581|ref|NP_246655.1| NAD-dependent DNA ligase LigA [Pasteurella multocida subsp. multocida str. Pm70] gi|81636517|sp|Q9CKA9|DNLJ_PASMU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|12722128|gb|AAK03800.1| Lig [Pasteurella multocida subsp. multocida str. Pm70] Length = 673 Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 6/66 (9%) Query: 550 KKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 +KA + L I +G L F T++ + ++ E L ++ + + +A +I Sbjct: 503 QKAKKTTLARFIFALGIREVGEATALNLANHFKTLEALKEATLEQLQEVQDVGEVVANRI 562 Query: 604 YNHFHK 609 + + + Sbjct: 563 FVFWRE 568 >gi|156381869|ref|XP_001632278.1| predicted protein [Nematostella vectensis] gi|156219331|gb|EDO40215.1| predicted protein [Nematostella vectensis] Length = 229 Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 KA + I G+G + LL+ F ++++ISR+S E ++ + G K A ++ + Sbjct: 156 KALLGTVQSIPGLGQKKALALLKEFKSIEVISRASVEAMSRVVG--KACAEQVKTFIDNS 213 >gi|309800924|ref|ZP_07695056.1| DNA ligase (NAD+) [Bifidobacterium dentium JCVIHMP022] gi|308222460|gb|EFO78740.1| DNA ligase (NAD+) [Bifidobacterium dentium JCVIHMP022] Length = 885 Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 26/45 (57%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +GP R + +FG++ I +S E L++I+GI +IA + F Sbjct: 742 LGPPTARTIATAFGSLDAIEHASVEELSAIDGIGPEIAESVVTWF 786 >gi|306822599|ref|ZP_07455977.1| NAD-dependent DNA ligase LigA [Bifidobacterium dentium ATCC 27679] gi|304554144|gb|EFM42053.1| NAD-dependent DNA ligase LigA [Bifidobacterium dentium ATCC 27679] Length = 897 Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 26/45 (57%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +GP R + +FG++ I +S E L++I+GI +IA + F Sbjct: 742 LGPPTARTIATAFGSLDAIEHASVEELSAIDGIGPEIAESVVTWF 786 >gi|229018003|ref|ZP_04174879.1| hypothetical protein bcere0030_25370 [Bacillus cereus AH1273] gi|229024225|ref|ZP_04180687.1| hypothetical protein bcere0029_25470 [Bacillus cereus AH1272] gi|228737081|gb|EEL87614.1| hypothetical protein bcere0029_25470 [Bacillus cereus AH1272] gi|228743272|gb|EEL93396.1| hypothetical protein bcere0030_25370 [Bacillus cereus AH1273] Length = 126 Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G++ +I +L+VGKA +++RIK + N + ++ I + E Sbjct: 47 GIFMFFNINDELLFVGKARKIRQRIKKHFEDNVSPIKNHR--DEVYRIDACIVEDPTERE 104 Query: 71 LLEANMIKRLKPRFNI 86 + E +I K ++N+ Sbjct: 105 IYETYIINEYKAKYNV 120 >gi|171742735|ref|ZP_02918542.1| hypothetical protein BIFDEN_01849 [Bifidobacterium dentium ATCC 27678] gi|283456203|ref|YP_003360767.1| NAD-dependent DNA ligase [Bifidobacterium dentium Bd1] gi|171278349|gb|EDT46010.1| hypothetical protein BIFDEN_01849 [Bifidobacterium dentium ATCC 27678] gi|283102837|gb|ADB09943.1| NAD-dependent DNA ligase [Bifidobacterium dentium Bd1] Length = 897 Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 26/45 (57%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +GP R + +FG++ I +S E L++I+GI +IA + F Sbjct: 742 LGPPTARTIATAFGSLDAIEHASVEELSAIDGIGPEIAESVVTWF 786 >gi|291454298|ref|ZP_06593688.1| NAD-dependent DNA ligase LigA [Streptomyces albus J1074] gi|291357247|gb|EFE84149.1| NAD-dependent DNA ligase LigA [Streptomyces albus J1074] Length = 736 Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 17/78 (21%) Query: 550 KKAAYSPLDEIN------------G-----IGPLRKRLLLQSFGTVKMISRSSPETLASI 592 KK + LD I G +GP+ + L + F +++ I ++ E LA Sbjct: 542 KKNTLAMLDHIEAAKQRPLARVLTGLSIRHVGPVAAQALAREFRSIERIEAATEEELAQT 601 Query: 593 EGISKKIACKIYNHFHKN 610 EG+ IA + + F + Sbjct: 602 EGVGPTIAASLKSWFAEE 619 >gi|239982451|ref|ZP_04704975.1| NAD-dependent DNA ligase LigA [Streptomyces albus J1074] Length = 728 Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 17/78 (21%) Query: 550 KKAAYSPLDEIN------------G-----IGPLRKRLLLQSFGTVKMISRSSPETLASI 592 KK + LD I G +GP+ + L + F +++ I ++ E LA Sbjct: 534 KKNTLAMLDHIEAAKQRPLARVLTGLSIRHVGPVAAQALAREFRSIERIEAATEEELAQT 593 Query: 593 EGISKKIACKIYNHFHKN 610 EG+ IA + + F + Sbjct: 594 EGVGPTIAASLKSWFAEE 611 >gi|170767420|ref|ZP_02901873.1| DNA ligase, NAD-dependent [Escherichia albertii TW07627] gi|170123754|gb|EDS92685.1| DNA ligase, NAD-dependent [Escherichia albertii TW07627] Length = 671 Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A ++N F + ++ Sbjct: 520 VGEATATGLAAYFGTLETLEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|206972506|ref|ZP_03233450.1| GIY-YIG catalytic domain protein [Bacillus cereus AH1134] gi|228958938|ref|ZP_04120641.1| hypothetical protein bthur0005_24330 [Bacillus thuringiensis serovar pakistani str. T13001] gi|229045400|ref|ZP_04192061.1| hypothetical protein bcere0027_24250 [Bacillus cereus AH676] gi|229079895|ref|ZP_04212427.1| hypothetical protein bcere0023_25470 [Bacillus cereus Rock4-2] gi|229128051|ref|ZP_04257033.1| hypothetical protein bcere0015_24970 [Bacillus cereus BDRD-Cer4] gi|229150916|ref|ZP_04279127.1| hypothetical protein bcere0011_24650 [Bacillus cereus m1550] gi|229161584|ref|ZP_04289564.1| hypothetical protein bcere0009_23700 [Bacillus cereus R309803] gi|229173366|ref|ZP_04300910.1| hypothetical protein bcere0006_24670 [Bacillus cereus MM3] gi|229178987|ref|ZP_04306345.1| hypothetical protein bcere0005_23410 [Bacillus cereus 172560W] gi|296503263|ref|YP_003664963.1| UvrC-like protein [Bacillus thuringiensis BMB171] gi|206732530|gb|EDZ49708.1| GIY-YIG catalytic domain protein [Bacillus cereus AH1134] gi|228604544|gb|EEK62007.1| hypothetical protein bcere0005_23410 [Bacillus cereus 172560W] gi|228610060|gb|EEK67338.1| hypothetical protein bcere0006_24670 [Bacillus cereus MM3] gi|228621829|gb|EEK78675.1| hypothetical protein bcere0009_23700 [Bacillus cereus R309803] gi|228632476|gb|EEK89094.1| hypothetical protein bcere0011_24650 [Bacillus cereus m1550] gi|228655326|gb|EEL11182.1| hypothetical protein bcere0015_24970 [Bacillus cereus BDRD-Cer4] gi|228703479|gb|EEL55933.1| hypothetical protein bcere0023_25470 [Bacillus cereus Rock4-2] gi|228724938|gb|EEL76234.1| hypothetical protein bcere0027_24250 [Bacillus cereus AH676] gi|228800777|gb|EEM47691.1| hypothetical protein bthur0005_24330 [Bacillus thuringiensis serovar pakistani str. T13001] gi|296324315|gb|ADH07243.1| UvrC-like protein [Bacillus thuringiensis BMB171] Length = 126 Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G++ +I +L+VGKA +++RIK + N + ++ I + E Sbjct: 47 GIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSPIKNHR--DEVYRIDACIVEDPTERE 104 Query: 71 LLEANMIKRLKPRFNI 86 + E +I K ++N+ Sbjct: 105 IYETYIINEYKAKYNV 120 >gi|165868948|ref|ZP_02213608.1| GIY-YIG catalytic domain [Bacillus anthracis str. A0488] gi|229184931|ref|ZP_04312122.1| hypothetical protein bcere0004_24890 [Bacillus cereus BGSC 6E1] gi|164715674|gb|EDR21191.1| GIY-YIG catalytic domain [Bacillus anthracis str. A0488] gi|228598584|gb|EEK56213.1| hypothetical protein bcere0004_24890 [Bacillus cereus BGSC 6E1] Length = 124 Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G++ +I +L+VGKA +++RIK + N + ++ I + E Sbjct: 45 GIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSPIKNHR--DEVYRIDACIVEDPTERE 102 Query: 71 LLEANMIKRLKPRFNI 86 + E +I K ++N+ Sbjct: 103 IYETYIINEYKAKYNV 118 >gi|328473436|gb|EGF44284.1| NAD-dependent DNA ligase LigA [Vibrio parahaemolyticus 10329] Length = 670 Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 23/52 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L Q F +++ I ++ E L +++ I +A I F + + Sbjct: 521 VGEATAANLAQHFKSLEAIQAATEEQLIAVQDIGVVVAKHITTFFEEEQNQA 572 >gi|298245037|ref|ZP_06968843.1| DNA ligase, NAD-dependent [Ktedonobacter racemifer DSM 44963] gi|297552518|gb|EFH86383.1| DNA ligase, NAD-dependent [Ktedonobacter racemifer DSM 44963] Length = 700 Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 7/77 (9%) Query: 541 AITTHRKRRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 AI ++R S L I +G +LL +FG + + +S + + GI Sbjct: 523 AIEASKQR----PLSRLLFGLNIRYVGEKTAQLLADAFGDMDTLMAASEAQINEVPGIGP 578 Query: 598 KIACKIYNHFHKNTSHT 614 KI + F + + Sbjct: 579 KIGQSVAQWFQQEENQA 595 >gi|260363295|ref|ZP_05776162.1| DNA ligase (NAD+) [Vibrio parahaemolyticus K5030] gi|308113593|gb|EFO51133.1| DNA ligase (NAD+) [Vibrio parahaemolyticus K5030] Length = 655 Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 23/52 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L Q F +++ I ++ E L +++ I +A I F + + Sbjct: 506 VGEATAANLAQHFKSLEAIQAATEEQLIAVQDIGVVVAKHITTFFEEEQNQA 557 >gi|28897574|ref|NP_797179.1| NAD-dependent DNA ligase LigA [Vibrio parahaemolyticus RIMD 2210633] gi|260878266|ref|ZP_05890621.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AN-5034] gi|260895418|ref|ZP_05903914.1| DNA ligase (NAD+) [Vibrio parahaemolyticus Peru-466] gi|260903353|ref|ZP_05911748.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AQ4037] gi|81728289|sp|Q87RJ4|DNLJ_VIBPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|28805786|dbj|BAC59063.1| DNA ligase [Vibrio parahaemolyticus RIMD 2210633] gi|308088617|gb|EFO38312.1| DNA ligase (NAD+) [Vibrio parahaemolyticus Peru-466] gi|308090169|gb|EFO39864.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AN-5034] gi|308107994|gb|EFO45534.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AQ4037] Length = 670 Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 23/52 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L Q F +++ I ++ E L +++ I +A I F + + Sbjct: 521 VGEATAANLAQHFKSLEAIQAATEEQLIAVQDIGVVVAKHITTFFEEEQNQA 572 >gi|229097228|ref|ZP_04228190.1| hypothetical protein bcere0020_24710 [Bacillus cereus Rock3-29] gi|229103314|ref|ZP_04233997.1| hypothetical protein bcere0019_24640 [Bacillus cereus Rock3-28] gi|229116224|ref|ZP_04245614.1| hypothetical protein bcere0017_25120 [Bacillus cereus Rock1-3] gi|228667056|gb|EEL22508.1| hypothetical protein bcere0017_25120 [Bacillus cereus Rock1-3] gi|228680153|gb|EEL34347.1| hypothetical protein bcere0019_24640 [Bacillus cereus Rock3-28] gi|228686039|gb|EEL39955.1| hypothetical protein bcere0020_24710 [Bacillus cereus Rock3-29] Length = 126 Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G++ +I +L+VGKA +++RIK + N + ++ I + E Sbjct: 47 GIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSPIKNHR--DEVYRIDACIVEDPTERE 104 Query: 71 LLEANMIKRLKPRFNI 86 + E +I K ++N+ Sbjct: 105 IYETYIINEYKAKYNV 120 >gi|269794376|ref|YP_003313831.1| DNA ligase, NAD-dependent [Sanguibacter keddieii DSM 10542] gi|269096561|gb|ACZ20997.1| DNA ligase, NAD-dependent [Sanguibacter keddieii DSM 10542] Length = 871 Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 6/73 (8%) Query: 549 RKKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 R+KA PL I +GP R L +F +V+ I ++ E LA+ EG+ IA Sbjct: 593 REKAKARPLWRVLVALSIRHVGPTAARALATAFESVEAIMAATEEELAATEGVGPTIARA 652 Query: 603 IYNHFHKNTSHTP 615 + F+ +S P Sbjct: 653 VRIWFNGRSSVEP 665 >gi|68536402|ref|YP_251107.1| NAD-dependent DNA ligase LigA [Corynebacterium jeikeium K411] gi|123748223|sp|Q4JUL8|DNLJ_CORJK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|68264001|emb|CAI37489.1| DNA ligase [Corynebacterium jeikeium K411] Length = 695 Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 29/49 (59%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP + L + F +V+ I+ +S E +A I+G+++ IA I + F Sbjct: 518 SIRHVGPTAAKALAKHFESVEDIASASAEEMAGIDGVAETIAESISDWF 566 >gi|291460667|ref|ZP_06600057.1| DNA ligase, NAD-dependent [Oribacterium sp. oral taxon 078 str. F0262] gi|291416626|gb|EFE90345.1| DNA ligase, NAD-dependent [Oribacterium sp. oral taxon 078 str. F0262] Length = 664 Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%) Query: 559 EINGIGPLRKRLLLQSFG---TVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I+GIG RLL + F ++ I + E L ++GI + +A K+Y +FH Sbjct: 500 GIDGIGLANARLLCRHFHQELSL--IRGAEKEELLEVDGIGEVLAEKLYAYFHSE 552 >gi|257454409|ref|ZP_05619671.1| DNA ligase, NAD-dependent [Enhydrobacter aerosaccus SK60] gi|257448175|gb|EEV23156.1| DNA ligase, NAD-dependent [Enhydrobacter aerosaccus SK60] Length = 675 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 24/95 (25%) Query: 540 FAITTHR-------KRRKKAAYSPLDEIN-----------------GIGPLRKRLLLQSF 575 +A++ HR K +K+ + L I G+G L F Sbjct: 476 YALSKHRDALINLEKLGEKSVENMLAAIEKSKDTTLPRFIFALGIGGVGESTAMNLAMQF 535 Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 G ++ + +S E L + +K A I+ F Sbjct: 536 GDLQPLMAASIEALQKTPDVGEKTADSIFEFFRAE 570 >gi|121604718|ref|YP_982047.1| DNA ligase [Polaromonas naphthalenivorans CJ2] gi|166216226|sp|A1VN98|DNLJ_POLNA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|120593687|gb|ABM37126.1| DNA ligase, NAD-dependent [Polaromonas naphthalenivorans CJ2] Length = 707 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 6/63 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I +G + L + FG + I +S E L + + +A I Sbjct: 532 KSKQTTLPRFVFGLGIRHVGEATAKALARHFGQLDSIMDASEEQLLEVADVGPIVAKSIR 591 Query: 605 NHF 607 F Sbjct: 592 TFF 594 >gi|207857840|ref|YP_002244491.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|254781409|sp|B5R3V4|DNLJ_SALEP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|206709643|emb|CAR33993.1| DNA ligase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 671 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + ++ + L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALQTATIDELQKVPDVGIVVATHVFNFFAEESN 569 >gi|205353534|ref|YP_002227335.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|254781410|sp|B5RCP9|DNLJ_SALG2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|205273315|emb|CAR38285.1| DNA ligase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628629|gb|EGE34972.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 671 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + ++ + L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALQTATIDELQKVPDVGIVVATHVFNFFAEESN 569 >gi|168243193|ref|ZP_02668125.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194449589|ref|YP_002046491.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|254781411|sp|B4TCF6|DNLJ_SALHS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|194407893|gb|ACF68112.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205337689|gb|EDZ24453.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 671 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + ++ + L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALQTATIDELQKVPDVGIVVATHVFNFFAEESN 569 >gi|198243638|ref|YP_002216496.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|254781408|sp|B5FQB9|DNLJ_SALDC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|197938154|gb|ACH75487.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326624250|gb|EGE30595.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 671 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + ++ + L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALQTATIDELQKVPDVGIVVATHVFNFFAEESN 569 >gi|7673996|sp|O87703|DNLJ_BACST RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|3688229|emb|CAA09732.1| DNA ligase [Geobacillus stearothermophilus] Length = 670 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 25/45 (55%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G +LL + F T++ + R++ E L ++ I +K+A I F Sbjct: 514 VGAKAAQLLAEHFETMERLERATKEELMAVPEIGEKMADAITAFF 558 >gi|255526680|ref|ZP_05393584.1| DNA protecting protein DprA [Clostridium carboxidivorans P7] gi|296185600|ref|ZP_06854009.1| DNA protecting protein DprA [Clostridium carboxidivorans P7] gi|255509612|gb|EET85948.1| DNA protecting protein DprA [Clostridium carboxidivorans P7] gi|296049728|gb|EFG89153.1| DNA protecting protein DprA [Clostridium carboxidivorans P7] Length = 364 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 27/49 (55%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 L E IG + + LL+ F T K I + E L ++EGI +K A I+N Sbjct: 8 LSETPNIGDVIGKKLLEEFKTPKNIFDADKEELMNVEGIGEKTANLIFN 56 >gi|219882959|ref|YP_002478123.1| DNA ligase, NAD-dependent [Arthrobacter chlorophenolicus A6] gi|254778150|sp|B8HIQ9|DNLJ2_ARTCA RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 2 gi|219861965|gb|ACL42306.1| DNA ligase, NAD-dependent [Arthrobacter chlorophenolicus A6] Length = 701 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 24/44 (54%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 R L FGT++ + ++ LA++EGI +K A I+ KN Sbjct: 544 RRLAAEFGTMEALQAATVSQLANVEGIGQKKAEVIHEQLKKNAP 587 >gi|325576592|ref|ZP_08147310.1| NAD-dependent DNA ligase LigA [Haemophilus parainfluenzae ATCC 33392] gi|325161155|gb|EGC73270.1| NAD-dependent DNA ligase LigA [Haemophilus parainfluenzae ATCC 33392] Length = 675 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 21/47 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L F T++ + + E L + + + +A +I +H+ Sbjct: 528 VGEATALNLANHFKTLEALQNADLEALQQVPDVGEVVANRILAFWHE 574 >gi|301155433|emb|CBW14899.1| DNA ligase, NAD(+)-dependent [Haemophilus parainfluenzae T3T1] Length = 667 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 21/47 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L F T++ + + E L + + + +A +I +H+ Sbjct: 520 VGEATALNLANHFKTLEALQNADLEALQQVPDVGEVVANRILAFWHE 566 >gi|289759140|ref|ZP_06518518.1| LOW QUALITY PROTEIN: NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis T85] gi|289714704|gb|EFD78716.1| LOW QUALITY PROTEIN: NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis T85] Length = 449 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG++ I+ +S + LA++EG+ IA + F Sbjct: 291 SIRHVGPTAARALATEFGSLDAIAAASTDQLAAVEGVGPTIAAAVTEWF 339 >gi|289751694|ref|ZP_06511072.1| LOW QUALITY PROTEIN: DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis T92] gi|289692281|gb|EFD59710.1| LOW QUALITY PROTEIN: DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis T92] Length = 409 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG++ I+ +S + LA++EG+ IA + F Sbjct: 285 SIRHVGPTAARALATEFGSLDAIAAASTDQLAAVEGVGPTIAAAVTEWF 333 >gi|260202156|ref|ZP_05769647.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis T46] gi|289444580|ref|ZP_06434324.1| DNA ligase, NAD-dependent [Mycobacterium tuberculosis T46] gi|289417499|gb|EFD14739.1| DNA ligase, NAD-dependent [Mycobacterium tuberculosis T46] Length = 517 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG++ I+ +S + LA++EG+ IA + F Sbjct: 359 SIRHVGPTAARALATEFGSLDAIAAASTDQLAAVEGVGPTIAAAVTEWF 407 >gi|253797891|ref|YP_003030892.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 1435] gi|253319394|gb|ACT23997.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 1435] Length = 474 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG++ I+ +S + LA++EG+ IA + F Sbjct: 316 SIRHVGPTAARALATEFGSLDAIAAASTDQLAAVEGVGPTIAAAVTEWF 364 >gi|228933990|ref|ZP_04096833.1| hypothetical protein bthur0009_24500 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228825686|gb|EEM71476.1| hypothetical protein bthur0009_24500 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 124 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G++ +I +L+VGKA +++RIK + N + ++ I + E Sbjct: 45 GIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSPIKNHR--DEVYRIDACIVEDPTERE 102 Query: 71 LLEANMIKRLKPRFNI 86 + E +I K ++N+ Sbjct: 103 IYETYIINEYKAKYNV 118 >gi|218754780|ref|ZP_03533576.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis GM 1503] gi|289763195|ref|ZP_06522573.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis GM 1503] gi|289710701|gb|EFD74717.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis GM 1503] Length = 690 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG++ I+ +S + LA++EG+ IA + F Sbjct: 532 SIRHVGPTAARALATEFGSLDAIAAASTDQLAAVEGVGPTIAAAVTEWF 580 >gi|215447287|ref|ZP_03434039.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis T85] Length = 416 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG++ I+ +S + LA++EG+ IA + F Sbjct: 258 SIRHVGPTAARALATEFGSLDAIAAASTDQLAAVEGVGPTIAAAVTEWF 306 >gi|215428469|ref|ZP_03426388.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis T92] Length = 411 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG++ I+ +S + LA++EG+ IA + F Sbjct: 286 SIRHVGPTAARALATEFGSLDAIAAASTDQLAAVEGVGPTIAAAVTEWF 334 >gi|215405001|ref|ZP_03417182.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 02_1987] gi|289746820|ref|ZP_06506198.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 02_1987] gi|289687348|gb|EFD54836.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 02_1987] Length = 691 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG++ I+ +S + LA++EG+ IA + F Sbjct: 533 SIRHVGPTAARALATEFGSLDAIAAASTDQLAAVEGVGPTIAAAVTEWF 581 >gi|308377195|ref|ZP_07441467.2| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu008] gi|13882885|gb|AAK47423.1| DNA ligase [Mycobacterium tuberculosis CDC1551] gi|308348655|gb|EFP37506.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu008] Length = 679 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG++ I+ +S + LA++EG+ IA + F Sbjct: 521 SIRHVGPTAARALATEFGSLDAIAAASTDQLAAVEGVGPTIAAAVTEWF 569 >gi|254233094|ref|ZP_04926421.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis C] gi|124602153|gb|EAY61163.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis C] Length = 495 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG++ I+ +S + LA++EG+ IA + F Sbjct: 337 SIRHVGPTAARALATEFGSLDAIAAASTDQLAAVEGVGPTIAAAVTEWF 385 >gi|15610151|ref|NP_217530.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis H37Rv] gi|31794191|ref|NP_856684.1| NAD-dependent DNA ligase LigA [Mycobacterium bovis AF2122/97] gi|121638896|ref|YP_979120.1| NAD-dependent DNA ligase LigA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662865|ref|YP_001284388.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis H37Ra] gi|148824204|ref|YP_001288958.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis F11] gi|161350059|ref|NP_337609.2| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis CDC1551] gi|167967816|ref|ZP_02550093.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis H37Ra] gi|215431968|ref|ZP_03429887.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis EAS054] gi|219559049|ref|ZP_03538125.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis T17] gi|224991388|ref|YP_002646077.1| NAD-dependent DNA ligase [Mycobacterium bovis BCG str. Tokyo 172] gi|254365649|ref|ZP_04981694.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis str. Haarlem] gi|260188040|ref|ZP_05765514.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis CPHL_A] gi|260206343|ref|ZP_05773834.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis K85] gi|289448688|ref|ZP_06438432.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis CPHL_A] gi|289553196|ref|ZP_06442406.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 605] gi|289571216|ref|ZP_06451443.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis T17] gi|289575722|ref|ZP_06455949.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis K85] gi|289755132|ref|ZP_06514510.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis EAS054] gi|294993895|ref|ZP_06799586.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 210] gi|297635642|ref|ZP_06953422.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis KZN 4207] gi|297732640|ref|ZP_06961758.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis KZN R506] gi|306777310|ref|ZP_07415647.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu001] gi|306785860|ref|ZP_07424182.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu003] gi|306789901|ref|ZP_07428223.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu004] gi|306794711|ref|ZP_07433013.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu005] gi|306798954|ref|ZP_07437256.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu006] gi|306969091|ref|ZP_07481752.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu009] gi|306973427|ref|ZP_07486088.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu010] gi|307081136|ref|ZP_07490306.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu011] gi|307085740|ref|ZP_07494853.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu012] gi|313659972|ref|ZP_07816852.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis KZN V2475] gi|54036987|sp|P63973|DNLJ_MYCTU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|54036988|sp|P63974|DNLJ_MYCBO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166215822|sp|A1KN09|DNLJ_MYCBP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166216214|sp|A5U726|DNLJ_MYCTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781375|sp|C1AGD0|DNLJ_MYCBT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|2791611|emb|CAA16099.1| PROBABLE DNA LIGASE [NAD DEPENDENT] LIGA (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+]) [Mycobacterium tuberculosis H37Rv] gi|31619786|emb|CAD96726.1| PROBABLE DNA LIGASE [NAD DEPENDENT] LIGA (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+]) [Mycobacterium bovis AF2122/97] gi|121494544|emb|CAL73025.1| Probable dna ligase [nad dependent] ligA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134151162|gb|EBA43207.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis str. Haarlem] gi|148507017|gb|ABQ74826.1| DNA ligase (NAD dependent) LigA [Mycobacterium tuberculosis H37Ra] gi|148722731|gb|ABR07356.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis F11] gi|224774503|dbj|BAH27309.1| NAD-dependent DNA ligase [Mycobacterium bovis BCG str. Tokyo 172] gi|289421646|gb|EFD18847.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis CPHL_A] gi|289437828|gb|EFD20321.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 605] gi|289540153|gb|EFD44731.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis K85] gi|289544970|gb|EFD48618.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis T17] gi|289695719|gb|EFD63148.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis EAS054] gi|308214358|gb|EFO73757.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu001] gi|308329532|gb|EFP18383.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu003] gi|308333670|gb|EFP22521.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu004] gi|308337029|gb|EFP25880.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu005] gi|308340842|gb|EFP29693.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu006] gi|308353381|gb|EFP42232.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu009] gi|308357226|gb|EFP46077.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu010] gi|308361179|gb|EFP50030.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu011] gi|308364771|gb|EFP53622.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu012] gi|323718395|gb|EGB27569.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis CDC1551A] gi|326904628|gb|EGE51561.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis W-148] gi|328457668|gb|AEB03091.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 4207] Length = 691 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG++ I+ +S + LA++EG+ IA + F Sbjct: 533 SIRHVGPTAARALATEFGSLDAIAAASTDQLAAVEGVGPTIAAAVTEWF 581 >gi|218234864|ref|YP_002367432.1| GIY-YIG catalytic domain protein [Bacillus cereus B4264] gi|228908439|ref|ZP_04072282.1| hypothetical protein bthur0013_26000 [Bacillus thuringiensis IBL 200] gi|229030393|ref|ZP_04186434.1| hypothetical protein bcere0028_24630 [Bacillus cereus AH1271] gi|229145287|ref|ZP_04273676.1| hypothetical protein bcere0012_24440 [Bacillus cereus BDRD-ST24] gi|229190801|ref|ZP_04317794.1| hypothetical protein bcere0002_24670 [Bacillus cereus ATCC 10876] gi|218162821|gb|ACK62813.1| GIY-YIG catalytic domain protein [Bacillus cereus B4264] gi|228592671|gb|EEK50497.1| hypothetical protein bcere0002_24670 [Bacillus cereus ATCC 10876] gi|228638126|gb|EEK94567.1| hypothetical protein bcere0012_24440 [Bacillus cereus BDRD-ST24] gi|228730918|gb|EEL81857.1| hypothetical protein bcere0028_24630 [Bacillus cereus AH1271] gi|228851230|gb|EEM96041.1| hypothetical protein bthur0013_26000 [Bacillus thuringiensis IBL 200] Length = 124 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G++ +I +L+VGKA +++RIK + N + ++ I + E Sbjct: 45 GIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSPIKNHR--DEVYRIDACIVEDPTERE 102 Query: 71 LLEANMIKRLKPRFNI 86 + E +I K ++N+ Sbjct: 103 IYETYIINEYKAKYNV 118 >gi|313888253|ref|ZP_07821924.1| DNA ligase (NAD+) [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845656|gb|EFR33046.1| DNA ligase (NAD+) [Peptoniphilus harei ACS-146-V-Sch2b] Length = 665 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 14/83 (16%) Query: 542 ITTHRKRRKKAAYSPLDE--------------INGIGPLRKRLLLQSFGTVKMISRSSPE 587 I +++R + ++ I +G R L F + + S E Sbjct: 480 IEGFKEKRTNNLLNAIENSKKPHLSNFIYALGIPNVGIKTARDLADYFKSFDKLKNSQEE 539 Query: 588 TLASIEGISKKIACKIYNHFHKN 610 L SI I A +I FH + Sbjct: 540 ELVSIGDIGNITAKEIVEFFHDD 562 >gi|256810024|ref|YP_003127393.1| ERCC4 domain protein [Methanocaldococcus fervens AG86] gi|256793224|gb|ACV23893.1| ERCC4 domain protein [Methanocaldococcus fervens AG86] Length = 767 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 24/50 (48%) Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + + +G LL+ F TV+ + + E L +EG+ K+ A KI Sbjct: 713 ESLPDVGGALADRLLKHFKTVENVFTAKEEELMKVEGVGKERAKKIREVL 762 >gi|311064086|ref|YP_003970811.1| NAD-dependent DNA ligase [Bifidobacterium bifidum PRL2010] gi|310866405|gb|ADP35774.1| LigA NAD-dependent DNA ligase [Bifidobacterium bifidum PRL2010] Length = 896 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 29/45 (64%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +GP RL+ +FG+++ I ++ + L++I+GI +IA + N F Sbjct: 739 LGPPTARLIASAFGSLEAIEQAGVDELSAIDGIGPEIAESVVNWF 783 >gi|224282769|ref|ZP_03646091.1| LigA [Bifidobacterium bifidum NCIMB 41171] gi|313139930|ref|ZP_07802123.1| LigA [Bifidobacterium bifidum NCIMB 41171] gi|313132440|gb|EFR50057.1| LigA [Bifidobacterium bifidum NCIMB 41171] Length = 900 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 29/45 (64%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +GP RL+ +FG+++ I ++ + L++I+GI +IA + N F Sbjct: 743 LGPPTARLIASAFGSLEAIEQAGVDELSAIDGIGPEIAESVVNWF 787 >gi|224064898|ref|XP_002187312.1| PREDICTED: hypothetical protein [Taeniopygia guttata] Length = 215 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I G+G + LLLQ FG++ + ++ L G + A +IY H Sbjct: 168 IPGVGKTKALLLLQRFGSIHRLCNAAIHQLEQAVG--QTGAQQIYTFLH 214 >gi|169350953|ref|ZP_02867891.1| hypothetical protein CLOSPI_01730 [Clostridium spiroforme DSM 1552] gi|169292015|gb|EDS74148.1| hypothetical protein CLOSPI_01730 [Clostridium spiroforme DSM 1552] Length = 682 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 3/68 (4%) Query: 548 RRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 + K S L I+ +G + L++ F ++ + +S L + I A I Sbjct: 517 KSKNNDASKLLTSLGISNVGKSAAKNLMKKFKSIDNLMNASYAQLIEVNDIGDISAMAII 576 Query: 605 NHFHKNTS 612 N+F + Sbjct: 577 NYFKNPDN 584 >gi|268325930|emb|CBH39518.1| putative ATP-dependent RNA helicase [uncultured archaeon] Length = 780 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 S L I GI + R LL F T++ I +S E L +E + K A I F Sbjct: 725 SALSNI-GI--MTTRKLLAKFKTIERIMAASKEELMEVENVGDKTAEHIKKVF 774 >gi|260219439|emb|CBA26284.1| DNA ligase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 696 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 6/63 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I +G + L + FGT+ I + E L ++ + +A I Sbjct: 530 KSKQTTLPRFLFGLGIRHVGEATAKELARHFGTLDAIMEADEEALLAVSDVGPIVAQSIR 589 Query: 605 NHF 607 F Sbjct: 590 TFF 592 >gi|300709542|ref|YP_003735356.1| NAD-dependent DNA ligase LigA [Halalkalicoccus jeotgali B3] gi|299123225|gb|ADJ13564.1| NAD-dependent DNA ligase LigA [Halalkalicoccus jeotgali B3] Length = 703 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 24/49 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G R L +FG + + +S + L ++ I + +A +I + F Sbjct: 527 GIPHVGRATARELAGAFGDLDGLMDASEDELREVDEIGEVVAREIRDFF 575 >gi|15827911|ref|NP_302174.1| NAD-dependent DNA ligase LigA [Mycobacterium leprae TN] gi|221230388|ref|YP_002503804.1| NAD-dependent DNA ligase LigA [Mycobacterium leprae Br4923] gi|7674013|sp|O33102|DNLJ_MYCLE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781376|sp|B8ZS27|DNLJ_MYCLB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|2414536|emb|CAB16425.1| DNA ligase [Mycobacterium leprae] gi|13093464|emb|CAC30658.1| DNA ligase [Mycobacterium leprae] gi|219933495|emb|CAR71800.1| DNA ligase [Mycobacterium leprae Br4923] Length = 694 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG+V I +SPE LA++EG+ IA + F Sbjct: 533 SIRHVGPTAARALATEFGSVDAILAASPEQLAAVEGVGTTIAAAVTEWF 581 >gi|150015242|ref|YP_001307496.1| NAD-dependent DNA ligase LigA [Clostridium beijerinckii NCIMB 8052] gi|190359245|sp|A6LQB0|DNLJ_CLOB8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|149901707|gb|ABR32540.1| DNA ligase, NAD-dependent [Clostridium beijerinckii NCIMB 8052] Length = 663 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 8/52 (15%), Positives = 23/52 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +G + L+ F +++ + ++ E L ++ + +A + F + Sbjct: 511 GIPNVGVKTAKDLVSRFESIEGLKNATFEELVGVQDVGDIVAQGVLAFFKEE 562 >gi|56418811|ref|YP_146129.1| NAD-dependent DNA ligase LigA [Geobacillus kaustophilus HTA426] gi|81348272|sp|Q5L3B9|DNLJ_GEOKA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|56378653|dbj|BAD74561.1| DNA ligase (polydeoxyribonucleotide synthase[NAD+]) [Geobacillus kaustophilus HTA426] Length = 670 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 25/45 (55%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G +LL + F T++ + R++ E L ++ I +K+A I F Sbjct: 514 VGAKAAQLLAEHFETMERLERATKEELMAVPEIGEKMADAITAFF 558 >gi|67612623|ref|XP_667238.1| excision repair cross-complementing rodent repair deficiency,complementation group 1 [Cryptosporidium hominis TU502] gi|54658355|gb|EAL37009.1| excision repair cross-complementing rodent repair deficiency,complementation group 1 [Cryptosporidium hominis] Length = 224 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 20/101 (19%) Query: 507 MEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPL 566 +E + + + L R+RD L + I Sbjct: 137 LETLKSHENSSSEIIRGGLSLDLFSRIRD--------------------ALSSLPRINKT 176 Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 LL+ FG++ + +S E L+ I+GI A I F Sbjct: 177 DSENLLKHFGSISKVVNASEEELSKIQGIGPIKAKVISEVF 217 >gi|284165509|ref|YP_003403788.1| ribosomal protein L32e [Haloterrigena turkmenica DSM 5511] gi|284015164|gb|ADB61115.1| Ribosomal protein L32e [Haloterrigena turkmenica DSM 5511] Length = 236 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L++I+G+G + L + F +++ I + + LA EGI +A +I Sbjct: 8 ELEDISGVGASKADALRDAGFESIEDIKEADQDDLAEAEGIGNALAARIKA 58 >gi|228953038|ref|ZP_04115099.1| hypothetical protein bthur0006_24270 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228806656|gb|EEM53214.1| hypothetical protein bthur0006_24270 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 124 Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G++ +I +L+VGKA +++RIK + N + ++ I + E Sbjct: 45 GIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSPIKNHR--DEVYRIDACIVEDPTERE 102 Query: 71 LLEANMIKRLKPRFNI 86 + E +I K ++N+ Sbjct: 103 IYETYIINEYKAKYNV 118 >gi|167044986|gb|ABZ09651.1| putative ERCC4 domain protein [uncultured marine crenarchaeote HF4000_APKG8G2] Length = 220 Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%) Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +K S L + G+G +L+ FGT + SS L+ + G+ + A I Sbjct: 145 QKQQLSMLCSLPGVGEKTAIRMLEKFGTPLRVLSSSIIELSKVSGLGEARAKNIKKVLQA 204 Query: 610 NTSH 613 + H Sbjct: 205 QSKH 208 >gi|153838362|ref|ZP_01991029.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus AQ3810] gi|149748221|gb|EDM59080.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus AQ3810] Length = 670 Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 23/52 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L Q F +++ I ++ E L +++ I +A I F + + Sbjct: 521 VGEATAANLAQHFKSLEAIQAATEEQLIAVQDIGVVVAKHITTFFEEEKNQA 572 >gi|310287227|ref|YP_003938485.1| NAD-dependent DNA ligase [Bifidobacterium bifidum S17] gi|309251163|gb|ADO52911.1| NAD-dependent DNA ligase [Bifidobacterium bifidum S17] Length = 900 Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 28/45 (62%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +GP RL+ +FG++ I ++ + L++I+GI +IA + N F Sbjct: 743 LGPPTARLIASAFGSLDAIEQAGVDELSAIDGIGPEIAESVVNWF 787 >gi|261403123|ref|YP_003247347.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus vulcanius M7] gi|261370116|gb|ACX72865.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus vulcanius M7] Length = 783 Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%) Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + + +G LL+ F TV+ + + E L ++G+ K+ A KI Sbjct: 729 ESLPDVGGALAERLLKHFKTVENVFTAKEEELMKVDGVGKERAKKIREVL 778 >gi|163841673|ref|YP_001626078.1| NAD-dependent DNA ligase [Renibacterium salmoninarum ATCC 33209] gi|190359277|sp|A9WTZ3|DNLJ_RENSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|162955149|gb|ABY24664.1| NAD-dependent DNA ligase [Renibacterium salmoninarum ATCC 33209] Length = 758 Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 26/52 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +GP R L +FG++ I +S LA ++G+ IA + F ++ Sbjct: 586 SIRHVGPTASRALATAFGSMAAIRAASEPELAEVDGVGPTIAAALIEWFAED 637 >gi|226365931|ref|YP_002783714.1| NAD-dependent DNA ligase LigA [Rhodococcus opacus B4] gi|254781403|sp|C1B1S4|DNLJ_RHOOB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|226244421|dbj|BAH54769.1| NAD(+)-dependent DNA ligase [Rhodococcus opacus B4] Length = 697 Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 25/49 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG++ I SS E LA+++G+ IA + F Sbjct: 535 SIRHVGPTAARALAGEFGSLDRIRESSVEELAAVDGVGGTIAAAVAEWF 583 >gi|238895883|ref|YP_002920619.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae NTUH-K2044] gi|238548201|dbj|BAH64552.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 671 Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +++ E L + + +A +N F + ++ Sbjct: 520 VGEATAAGLAAHFGTLEALEQATIEELQKVPDVGIVVATHTFNFFAEESN 569 >gi|114319842|ref|YP_741525.1| DNA ligase, NAD-dependent [Alkalilimnicola ehrlichii MLHE-1] gi|122312282|sp|Q0AAV2|DNLJ_ALHEH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|114226236|gb|ABI56035.1| DNA ligase, NAD-dependent [Alkalilimnicola ehrlichii MLHE-1] Length = 673 Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 6/65 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA + L I +G + R L + FG+++ I + LA + +A I Sbjct: 503 KARRTTLPRFLYALGIQHVGEVTARRLAEHFGSLEAIMNADESALAETPDVGPVVAQAIA 562 Query: 605 NHFHK 609 + F + Sbjct: 563 HFFAE 567 >gi|300521550|gb|ADK25986.1| ERCC4-type nuclease [Candidatus Nitrososphaera gargensis] Length = 244 Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 22/54 (40%) Query: 554 YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 S L + G+G +L+ F T K +S LA+I G A ++ Sbjct: 170 LSVLSSVPGVGEKLAARMLEKFHTPKRALNASVAELATIPGFGLARAERVRKVL 223 >gi|134102614|ref|YP_001108275.1| NAD-dependent DNA ligase LigA [Saccharopolyspora erythraea NRRL 2338] gi|291004701|ref|ZP_06562674.1| NAD-dependent DNA ligase LigA [Saccharopolyspora erythraea NRRL 2338] gi|166216238|sp|A4FMS5|DNLJ_SACEN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|133915237|emb|CAM05350.1| DNA ligase, NAD-dependent [Saccharopolyspora erythraea NRRL 2338] Length = 727 Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 27/49 (55%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP+ R+L + FG++ I +S E LA+ EG+ IA + F Sbjct: 562 SIRHVGPIAARVLAREFGSLDRIQEASEEELAAGEGVGPTIATAVREWF 610 >gi|15920650|ref|NP_376319.1| hypothetical protein ST0439 [Sulfolobus tokodaii str. 7] gi|15621433|dbj|BAB65428.1| 232aa long conserved hypothetical protein [Sulfolobus tokodaii str. 7] Length = 232 Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 IG LL+ FG+++ I +S L + S+K A +IY H Sbjct: 163 PQIGSKLAERLLEKFGSIERICNASVSELEKVLE-SRKKAEEIYKVIH 209 >gi|169630426|ref|YP_001704075.1| NAD-dependent DNA ligase LigA [Mycobacterium abscessus ATCC 19977] gi|254781373|sp|B1MDV2|DNLJ_MYCA9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|169242393|emb|CAM63421.1| DNA ligase (polydeoxyribonucleotide synthase NAD+) [Mycobacterium abscessus] Length = 681 Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG ++ I +S E LA++EG+ IA + + F Sbjct: 525 SIRHVGPTAARALATEFGDLEAIEGASVEQLAAVEGVGATIAAAVVDWF 573 >gi|326693831|ref|ZP_08230836.1| DNA ligase, NAD-dependent [Leuconostoc argentinum KCTC 3773] Length = 681 Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF-HKNT 611 +G RL+ + F T+ I+ ++ +ASI+GI + IA I +F H + Sbjct: 526 VGAKAARLVAEKFKTLSAIAEATVPEIASIDGIGEAIAQSIVQYFSHPES 575 >gi|32398840|emb|CAD98550.1| excision repair cross-complementing rodent repair deficiency,complementation group 1, possible [Cryptosporidium parvum] Length = 224 Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 20/101 (19%) Query: 507 MEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPL 566 +E + + + L R+RD L + I Sbjct: 137 LETLKSHENSSSEIIRGGLSLDLFSRIRD--------------------ALSSLPRINKT 176 Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 LL+ FG++ + +S E L+ I+GI A I F Sbjct: 177 DSENLLKHFGSISKVVNASEEELSKIQGIGPIKAKVISEIF 217 >gi|237738042|ref|ZP_04568523.1| NAD-dependent DNA ligase [Fusobacterium mortiferum ATCC 9817] gi|229419922|gb|EEO34969.1| NAD-dependent DNA ligase [Fusobacterium mortiferum ATCC 9817] Length = 663 Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G +LL S G + + S E L IEGI K+A I++ F Sbjct: 505 GIPFVGKTSAKLLADSSGNIDKLMSMSVEELMEIEGIGDKMAQAIFDFFRDEE 557 >gi|294498770|ref|YP_003562470.1| GIY-YIG catalytic domain-containing protein [Bacillus megaterium QM B1551] gi|294348707|gb|ADE69036.1| GIY-YIG catalytic domain protein [Bacillus megaterium QM B1551] Length = 266 Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 41/87 (47%), Gaps = 7/87 (8%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAY-NLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 Q+P PG+Y D GR+LY+G +L +R+++++ ++ +I + + Sbjct: 24 QLPSAPGIYFFFDKPGRLLYIGTTTGSLLERVRAHVAGKGVSN-TKKFHKEIYAVGYIEV 82 Query: 64 CT---EVEALLLEANMIKRLKPRFNIL 87 E++ +L ++ P++N Sbjct: 83 HGLKKELD--MLRTMLVNGYFPKYNKQ 107 >gi|160895209|ref|ZP_02075981.1| hypothetical protein CLOL250_02768 [Clostridium sp. L2-50] gi|156863088|gb|EDO56519.1| hypothetical protein CLOL250_02768 [Clostridium sp. L2-50] Length = 653 Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Query: 559 EINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I G+G +L+ + F + I + E I+GI IA +I +F ++ Sbjct: 500 GIPGVGDATAKLICKHFKNNLDQIMHADVEAYTEIDGIGTVIAEEIVRYFKNPSN 554 >gi|290957204|ref|YP_003488386.1| DNA ligase [Streptomyces scabiei 87.22] gi|260646730|emb|CBG69827.1| putative DNA ligase [Streptomyces scabiei 87.22] Length = 739 Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 39/92 (42%), Gaps = 14/92 (15%) Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPL--DEINGIGPLRKRLLLQSFGTV 578 + L +Q++ +EA + + L I +GP+ + L + F ++ Sbjct: 543 EPKKNTLALLQKI-EEA-----------KSRPLARFLNGLSIRHVGPVAAQALAREFRSI 590 Query: 579 KMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +++ E L +++G+ +A + F + Sbjct: 591 DRIEQATQEELTAVDGVGAIVAKALEEWFAEE 622 >gi|120434999|ref|YP_860685.1| DNA ligase [Gramella forsetii KT0803] gi|166215777|sp|A0LZ23|DNLJ_GRAFK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|117577149|emb|CAL65618.1| DNA ligase [Gramella forsetii KT0803] Length = 664 Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 26/50 (52%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + L + F +++ + +S E L +I+ I ++IA + F+ + Sbjct: 514 VGETVAKKLAKHFKSIEALMAASEEELVNIDEIGERIAWSVVEFFNIEAN 563 >gi|300311482|ref|YP_003775574.1| NAD-dependent DNA ligase [Herbaspirillum seropedicae SmR1] gi|300074267|gb|ADJ63666.1| NAD-dependent DNA ligase (contains BRCT domain type II) protein [Herbaspirillum seropedicae SmR1] Length = 688 Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 6/64 (9%) Query: 550 KKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 +K+ + L I +G + L + FG + I +S L + + +A I Sbjct: 516 QKSKSTTLARFIYALGIRHVGEATAKELARHFGGLDKILAASEAQLLEVADVGPVVATSI 575 Query: 604 YNHF 607 + F Sbjct: 576 RSFF 579 >gi|254556107|ref|YP_003062524.1| DNA ligase (NAD+) [Lactobacillus plantarum JDM1] gi|300766626|ref|ZP_07076543.1| NAD-dependent DNA ligase LigA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180104|ref|YP_003924232.1| DNA ligase (NAD+) [Lactobacillus plantarum subsp. plantarum ST-III] gi|254045034|gb|ACT61827.1| DNA ligase (NAD+) [Lactobacillus plantarum JDM1] gi|300495726|gb|EFK30877.1| NAD-dependent DNA ligase LigA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045595|gb|ADN98138.1| DNA ligase (NAD+) [Lactobacillus plantarum subsp. plantarum ST-III] Length = 679 Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 R + L I +G RL+ Q FGT++ + +S E +A+I+ + IA + + Sbjct: 506 RDNSLERLLFGLGIRHVGAKVARLIAQHFGTIEALMAASQEEIAAIDSMGDVIANAVVQY 565 Query: 607 FHKNTSHT 614 F + HT Sbjct: 566 FESDEVHT 573 >gi|28377923|ref|NP_784815.1| DNA ligase (NAD+) [Lactobacillus plantarum WCFS1] gi|81631729|sp|Q88XQ0|DNLJ_LACPL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|28270757|emb|CAD63662.1| DNA ligase (NAD+) [Lactobacillus plantarum WCFS1] Length = 679 Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 R + L I +G RL+ Q FGT++ + +S E +A+I+ + IA + + Sbjct: 506 RDNSLERLLFGLGIRHVGAKVARLIAQHFGTIEALMAASQEEIAAIDSMGDVIANAVVQY 565 Query: 607 FHKNTSHT 614 F + HT Sbjct: 566 FESDEVHT 573 >gi|330445331|ref|ZP_08308983.1| DNA ligase, NAD-dependent [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489522|dbj|GAA03480.1| DNA ligase, NAD-dependent [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 671 Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 23/48 (47%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +G L F T++ IS+++ E L + + +A I+N F + Sbjct: 521 VGEATAANLANYFETLEAISQATKEQLIEVPDVGDVVAAHIFNFFREE 568 >gi|253701546|ref|YP_003022735.1| DNA ligase, NAD-dependent [Geobacter sp. M21] gi|251776396|gb|ACT18977.1| DNA ligase, NAD-dependent [Geobacter sp. M21] Length = 668 Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 3/66 (4%) Query: 550 KKAAYSPL---DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 K+ S L I +G +LL +FG+++ ++ +S E L SI + ++A I + Sbjct: 506 KERELSRLIFALGIRHVGEHTAKLLAGAFGSMENLAAASEEELTSIREVGPQVAASIADF 565 Query: 607 FHKNTS 612 F + Sbjct: 566 FKSEEN 571 >gi|325955534|ref|YP_004239194.1| DNA ligase [Weeksella virosa DSM 16922] gi|323438152|gb|ADX68616.1| DNA ligase [Weeksella virosa DSM 16922] Length = 663 Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 27/53 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G + L FGT++ + +++ + L +E I +KIA I +F K Sbjct: 509 GIRHVGNTVAKKLALHFGTMESLKKATYDELILVEDIGEKIAQSIIAYFDKEE 561 >gi|171914081|ref|ZP_02929551.1| DNA ligase, NAD-dependent [Verrucomicrobium spinosum DSM 4136] Length = 669 Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 23/46 (50%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 +G R L+ FG V ++R+S E L ++ I +A I+ F Sbjct: 522 VGASSARSLMDHFGAVDALARASVEDLLKVQDIGGIVAQSIHGWFQ 567 >gi|87307031|ref|ZP_01089177.1| DNA processing chain A [Blastopirellula marina DSM 3645] gi|87290404|gb|EAQ82292.1| DNA processing chain A [Blastopirellula marina DSM 3645] Length = 407 Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 R K L ++G+GP ++LL+ FGT + ++ L + G+ K++ KI Sbjct: 45 RAKLR---LALVSGVGPRTSQVLLERFGTHAGVLAATRSELERVSGVGPKLSQKI 96 >gi|260063099|ref|YP_003196179.1| hypothetical protein RB2501_15959 [Robiginitalea biformata HTCC2501] gi|88784668|gb|EAR15838.1| hypothetical protein RB2501_15959 [Robiginitalea biformata HTCC2501] Length = 375 Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 4/82 (4%) Query: 4 EQMPECPGVYQMLDIAGRVLYV-GKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 E+ P+ GVY + D G +LY+ G ++++ + + + R + +RF Sbjct: 192 EEAPDSVGVYYLYDKDGNLLYLDGT-RDMKRSLNRHFTGESPHSR--ALRKLTREVRFEK 248 Query: 63 TCTEVEALLLEANMIKRLKPRF 84 T +E+ A L ++ KP + Sbjct: 249 TGSELIARLKAFAEVRENKPSY 270 >gi|227498227|ref|ZP_03928396.1| DNA ligase (NAD(+)) [Actinomyces urogenitalis DSM 15434] gi|226832370|gb|EEH64753.1| DNA ligase (NAD(+)) [Actinomyces urogenitalis DSM 15434] Length = 827 Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 23/38 (60%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 +GP R L FG+++ + ++S + L+ ++G+ IA Sbjct: 669 VGPTAARALAARFGSLEALRQASLDELSQVDGVGPTIA 706 >gi|158319601|ref|YP_001512108.1| NAD-dependent DNA ligase LigA [Alkaliphilus oremlandii OhILAs] gi|190359226|sp|A8MLJ8|DNLJ_ALKOO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|158139800|gb|ABW18112.1| DNA ligase, NAD-dependent [Alkaliphilus oremlandii OhILAs] Length = 661 Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 20/53 (37%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G L + + + + I + + L ++ + +A I + F Sbjct: 504 GIPNVGRKTATDLAKHYKSFQAIQEAEFQELITLPDVGDIVAQSIIDFFEDEE 556 >gi|238026897|ref|YP_002911128.1| DNA ligase, NAD-dependent [Burkholderia glumae BGR1] gi|237876091|gb|ACR28424.1| DNA ligase, NAD-dependent [Burkholderia glumae BGR1] Length = 747 Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA ++ L I +G + L + FG ++ I +S + L + + +A ++ Sbjct: 576 KARHTTLARFIYALGIRHVGESTAKDLAKHFGALQPIMDASIDALLEVNDVGPVVAESLH 635 Query: 605 NHFHKNTSHT 614 F + + T Sbjct: 636 QFFAEEHNRT 645 >gi|328885211|emb|CCA58450.1| DNA ligase [Streptomyces venezuelae ATCC 10712] Length = 726 Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 28/52 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +GP+ L + F +++ I ++S E LA+++G+ IA + F + Sbjct: 558 SIRHVGPVAAEALAREFRSLERIEQASEEELAAVDGVGGIIAAAVKQWFSEE 609 >gi|91216495|ref|ZP_01253461.1| DNA ligase [Psychroflexus torquis ATCC 700755] gi|91185289|gb|EAS71666.1| DNA ligase [Psychroflexus torquis ATCC 700755] Length = 667 Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 30/50 (60%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + L+++F ++ +++ +S E L +++ I ++IA + + F + + Sbjct: 516 VGETVAKKLVKAFKSIDVLASASLENLVAVDEIGERIAQSVVDFFKDDAN 565 >gi|74312947|ref|YP_311366.1| NAD-dependent DNA ligase LigA [Shigella sonnei Ss046] gi|123732314|sp|Q3YZD1|DNLJ_SHISS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|73856424|gb|AAZ89131.1| DNA ligase [Shigella sonnei Ss046] gi|323169148|gb|EFZ54825.1| DNA ligase, NAD-dependent [Shigella sonnei 53G] Length = 671 Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 25/50 (50%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++++ +S E L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEVLEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 >gi|237733138|ref|ZP_04563619.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229383820|gb|EEO33911.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 664 Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 K S I+ +G + L++ F ++ + ++S L + I A I N+F Sbjct: 507 KLLTS--LGISNVGKSAAKSLMKKFKSIDNLMKASYAQLIEVNDIGDISAMAIINYFKNP 564 Query: 611 TSHT 614 + Sbjct: 565 DNQA 568 >gi|218439827|ref|YP_002378156.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7424] gi|254781306|sp|B7K8U0|DNLJ_CYAP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218172555|gb|ACK71288.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7424] Length = 678 Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G + +LL +F +V+ +S++S +L S+ GI +IA +Y+ F + T Sbjct: 523 VGSVTAKLLSDNFKSVEQLSQASFTSLESVYGIGAEIAQSVYDWFKIEANQT 574 >gi|291166519|gb|EFE28565.1| DNA ligase, NAD-dependent [Filifactor alocis ATCC 35896] Length = 668 Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 1/73 (1%) Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 I + R L I+ +G ++L ++F +++ + +++ + L IE I K A Sbjct: 498 INHSKSRNLNQLLVAL-GIDFVGEKAAKVLSKNFSSLEELEKANLDDLMRIEEIGLKTAQ 556 Query: 602 KIYNHFHKNTSHT 614 I N+F + Sbjct: 557 SILNYFQLEENRA 569 >gi|167756540|ref|ZP_02428667.1| hypothetical protein CLORAM_02077 [Clostridium ramosum DSM 1402] gi|167702715|gb|EDS17294.1| hypothetical protein CLORAM_02077 [Clostridium ramosum DSM 1402] Length = 664 Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 K S I+ +G + L++ F ++ + ++S L + I A I N+F Sbjct: 507 KLLTS--LGISNVGKSAAKSLMKKFKSIDNLMKASYAQLIEVNDIGDISAMAIINYFKNP 564 Query: 611 TSHT 614 + Sbjct: 565 DNQA 568 >gi|66475596|ref|XP_627614.1| ERCC1 excision repair 1; C-terminal HhH domain [Cryptosporidium parvum Iowa II] gi|46229292|gb|EAK90141.1| ERCC1 excision repair 1; C-terminal HhH domain [Cryptosporidium parvum Iowa II] Length = 240 Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 20/101 (19%) Query: 507 MEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPL 566 +E + + + L R+RD L + I Sbjct: 153 LETLKSHENSSSEIIRGGLSLDLFSRIRD--------------------ALSSLPRINKT 192 Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 LL+ FG++ + +S E L+ I+GI A I F Sbjct: 193 DSENLLKHFGSISKVVNASEEELSKIQGIGPIKAKVISEIF 233 >gi|229110153|ref|ZP_04239729.1| hypothetical protein bcere0018_24080 [Bacillus cereus Rock1-15] gi|228673345|gb|EEL28613.1| hypothetical protein bcere0018_24080 [Bacillus cereus Rock1-15] Length = 124 Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G++ +I +L+VGKA +++RIK + N + ++ I + E Sbjct: 45 GIFMFYNINDDLLFVGKARKIRQRIKKHFEDNVSPIKNHR--DEVYRIDACIVEDPTERE 102 Query: 71 LLEANMIKRLKPRFNI 86 + E +I K ++N+ Sbjct: 103 IYETYIINEYKAKYNV 118 >gi|116748867|ref|YP_845554.1| DNA ligase, NAD-dependent [Syntrophobacter fumaroxidans MPOB] gi|116697931|gb|ABK17119.1| DNA ligase, NAD-dependent [Syntrophobacter fumaroxidans MPOB] Length = 694 Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 27/45 (60%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G RLL + FGT+ + R+S E L S+ G+ + +A + ++F Sbjct: 544 VGSHVARLLAERFGTLDAVRRASVEELMSVNGVGEVVARSVVHYF 588 >gi|166216279|sp|A0LI67|DNLJ_SYNFM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 675 Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 27/45 (60%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G RLL + FGT+ + R+S E L S+ G+ + +A + ++F Sbjct: 525 VGSHVARLLAERFGTLDAVRRASVEELMSVNGVGEVVARSVVHYF 569 >gi|333030674|ref|ZP_08458735.1| DNA ligase [Bacteroides coprosuis DSM 18011] gi|332741271|gb|EGJ71753.1| DNA ligase [Bacteroides coprosuis DSM 18011] Length = 667 Score = 54.3 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 29/50 (58%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + L ++F + ++++S E L SI+ I +KIA I N+F K + Sbjct: 517 VGETVAKKLAKAFKNIGDLAKASQEELISIDEIGEKIAESIINYFSKEEN 566 >gi|229843861|ref|ZP_04464002.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 6P18H1] gi|229812855|gb|EEP48543.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 6P18H1] Length = 670 Score = 54.3 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 7/47 (14%), Positives = 20/47 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L F T+ + + + L + + + +A +I+ + + Sbjct: 521 VGEATALNLANHFKTLDALKEADLDQLQQVPDVGEVVANRIFIFWRE 567 >gi|225873424|ref|YP_002754883.1| DNA ligase, NAD-dependent [Acidobacterium capsulatum ATCC 51196] gi|254781243|sp|C1F7S7|DNLJ_ACIC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|225792636|gb|ACO32726.1| DNA ligase, NAD-dependent [Acidobacterium capsulatum ATCC 51196] Length = 677 Score = 54.0 bits (128), Expect = 7e-05, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 6/65 (9%) Query: 551 KAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ +PLD I +G + L + +G++ + ++S E L + + +++ I Sbjct: 509 KSRQAPLDRVLFGLGIRFVGERTAQALAEEYGSMDALMQASREELERVNDVGPRVSEAIR 568 Query: 605 NHFHK 609 F + Sbjct: 569 EFFDE 573 >gi|110637718|ref|YP_677925.1| DNA ligase [Cytophaga hutchinsonii ATCC 33406] gi|123354667|sp|Q11VI1|DNLJ_CYTH3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|110280399|gb|ABG58585.1| DNA ligase [Cytophaga hutchinsonii ATCC 33406] Length = 670 Score = 54.0 bits (128), Expect = 7e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 4/57 (7%) Query: 554 YSPLDEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 S L I GI G L F ++ + ++S E L I KIA I F Sbjct: 507 KSVLFAI-GIRYVGSTVAEKLALHFKSINALEKASIEELLQAPEIGIKIAQSIIEWF 562 >gi|302390293|ref|YP_003826114.1| DNA ligase, NAD-dependent [Thermosediminibacter oceani DSM 16646] gi|302200921|gb|ADL08491.1| DNA ligase, NAD-dependent [Thermosediminibacter oceani DSM 16646] Length = 672 Score = 54.0 bits (128), Expect = 7e-05, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 46/119 (38%), Gaps = 26/119 (21%) Query: 504 SAGMEKFFVKKGEALVLNM---RDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLD-- 558 + +++K+ + + L + + + +E+ K+R PLD Sbjct: 470 KDAADLYYLKREDLVPLERMGEKSAA-NLLAAI-EES---------KKR------PLDRL 512 Query: 559 ----EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G LL ++F ++ + ++ E L + I KIA I F + ++ Sbjct: 513 IYALGIPFVGSRTASLLAEAFSSIDDLQKAKYEDLIKVPEIGDKIAQSILAFFRQEQTN 571 >gi|226310273|ref|YP_002770167.1| NAD-dependent DNA ligase [Brevibacillus brevis NBRC 100599] gi|254781268|sp|C0Z4D6|DNLJ_BREBN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|226093221|dbj|BAH41663.1| NAD-dependent DNA ligase [Brevibacillus brevis NBRC 100599] Length = 671 Score = 54.0 bits (128), Expect = 7e-05, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 25/45 (55%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G R+L + FG + I ++S E + I+ I K+A + N+F Sbjct: 518 VGAKAARVLAEHFGNIDTIMQASEEEITQIDEIGPKMAASLVNYF 562 >gi|160945211|ref|ZP_02092437.1| hypothetical protein FAEPRAM212_02730 [Faecalibacterium prausnitzii M21/2] gi|158442942|gb|EDP19947.1| hypothetical protein FAEPRAM212_02730 [Faecalibacterium prausnitzii M21/2] Length = 671 Score = 54.0 bits (128), Expect = 7e-05, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 13/76 (17%) Query: 541 AITTHRKRRKKAAYSPLDE------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 AIT + + LD+ I IG LL + FGT++ I ++ E ++ I+G Sbjct: 495 AITA-------SKQNNLDKLLFGFGIRNIGDKAAALLAEHFGTLQAIREATAEQVSQIDG 547 Query: 595 ISKKIACKIYNHFHKN 610 +A + F K Sbjct: 548 FGGVMAQSVVEFFAKE 563 >gi|315426483|dbj|BAJ48115.1| helicase [Candidatus Caldiarchaeum subterraneum] gi|315426513|dbj|BAJ48144.1| helicase [Candidatus Caldiarchaeum subterraneum] Length = 711 Score = 54.0 bits (128), Expect = 7e-05, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIY 604 PL + G+G +R R L + + T++ + R+S E LA + I +IA I Sbjct: 659 PLVSLKGVGRVRARNLYNAGYRTIEDLRRASAEELAQVPSIGPRIAASIK 708 >gi|302387645|ref|YP_003823467.1| DNA ligase, NAD-dependent [Clostridium saccharolyticum WM1] gi|302198273|gb|ADL05844.1| DNA ligase, NAD-dependent [Clostridium saccharolyticum WM1] Length = 654 Score = 54.0 bits (128), Expect = 7e-05, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 7/71 (9%) Query: 550 KKAAYSPL------DEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACK 602 KKA+++ L I GIG ++L Q F + + ++ E L ++ GI K +A Sbjct: 482 KKASHTTLPRLIYGLGIAGIGLANAKMLCQEFKSDFGKMRKAEEEELTAVPGIGKVLADA 541 Query: 603 IYNHFHKNTSH 613 +F + ++ Sbjct: 542 WITYFKEEKNN 552 >gi|313679715|ref|YP_004057454.1| DNA ligase, nad-dependent [Oceanithermus profundus DSM 14977] gi|313152430|gb|ADR36281.1| DNA ligase, NAD-dependent [Oceanithermus profundus DSM 14977] Length = 670 Score = 54.0 bits (128), Expect = 7e-05, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 21/49 (42%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G R L + FGT++ + + E L ++ + A +I Sbjct: 514 GIPQVGEALARTLARRFGTIEKLMEAGEEELEAVPDVGPVTAAEIRRAL 562 >gi|167044514|gb|ABZ09189.1| putative ERCC4 domain protein [uncultured marine crenarchaeote HF4000_APKG6J21] Length = 228 Score = 54.0 bits (128), Expect = 7e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%) Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +K S L + G+G +L+ FGT + SS L+ + G+ + A I Sbjct: 153 QKQQLSMLCSLPGVGEKTAVRMLEKFGTPLRVLSSSIIELSKVSGLGEARAKNIKKVLQA 212 Query: 610 NTSH 613 + H Sbjct: 213 QSKH 216 >gi|302524940|ref|ZP_07277282.1| DNA ligase, NAD-dependent [Streptomyces sp. AA4] gi|302433835|gb|EFL05651.1| DNA ligase, NAD-dependent [Streptomyces sp. AA4] Length = 707 Score = 54.0 bits (128), Expect = 7e-05, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP + L + FG+++ I ++ E LA ++G+ IA + F Sbjct: 532 SIRHVGPTAAQALAREFGSLQRIEDTTEEELADVDGVGPTIAHAVQEWF 580 >gi|213963472|ref|ZP_03391726.1| SMF family protein [Capnocytophaga sputigena Capno] gi|213953880|gb|EEB65208.1| SMF family protein [Capnocytophaga sputigena Capno] Length = 364 Score = 54.0 bits (128), Expect = 7e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN--HFHKNTSH 613 L +I IG + + L+ FG+ K I +L + GI KI I N + + + Sbjct: 10 ALKKIPLIGDITAKKLIAHFGSAKNIFAQRRSSLEKVMGIGSKITQNILNSQYLQEAETE 69 >gi|209364099|ref|YP_001424866.2| NAD-dependent DNA ligase [Coxiella burnetii Dugway 5J108-111] gi|207082032|gb|ABS76887.2| NAD-dependent DNA ligase [Coxiella burnetii Dugway 5J108-111] Length = 673 Score = 54.0 bits (128), Expect = 7e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 6/65 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I G+G R L + F + ++ ++S ETL I I +A I+ Sbjct: 508 KSKKTTLPRFLYALGIRGVGDTIARTLARHFHELDLLMKASIETLQEIRDIGPVVAENIH 567 Query: 605 NHFHK 609 FH+ Sbjct: 568 AFFHQ 572 >gi|167045230|gb|ABZ09890.1| putative ERCC4 domain protein [uncultured marine crenarchaeote HF4000_APKG8O8] Length = 243 Score = 54.0 bits (128), Expect = 7e-05, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 7/72 (9%) Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY----- 604 +K S L + G+G +L+ FGT + SS L+ I G+ + A KI Sbjct: 168 QKQQLSVLCSLPGVGEKTAIRMLEKFGTPLKVFSSSTTELSKISGLGETRAKKIKKMLQV 227 Query: 605 --NHFHKNTSHT 614 H KN+ T Sbjct: 228 QSKHLKKNSQKT 239 >gi|57641267|ref|YP_183745.1| RNA helicase Ski2-like protein [Thermococcus kodakarensis KOD1] gi|68052052|sp|Q5JGV6|HELS_PYRKO RecName: Full=Putative ski2-type helicase; Contains: RecName: Full=Endonuclease PI-PkoHel; AltName: Full=Pko Hel intein gi|57159591|dbj|BAD85521.1| RNA helicase Ski2 homolog [Thermococcus kodakarensis KOD1] Length = 1125 Score = 54.0 bits (128), Expect = 7e-05, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 11/81 (13%) Query: 530 IQRLRDEAHRFAITTHRKRRKKAAYSPLD--EINGIGPLRKRLLLQS-FGTVKMISRSSP 586 +Q LRD H + R L+ ++ IG R R L + F +V+ I R+ P Sbjct: 1029 LQYLRD--------LHLRLRHGVREELLELVKLPNIGRRRARALYNAGFRSVEDILRAKP 1080 Query: 587 ETLASIEGISKKIACKIYNHF 607 + L +EGI KI IY H Sbjct: 1081 KDLLQVEGIGLKIIEGIYRHL 1101 >gi|56460801|ref|YP_156082.1| NAD-dependent DNA ligase [Idiomarina loihiensis L2TR] gi|81362279|sp|Q5QUK1|DNLJ_IDILO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|56179811|gb|AAV82533.1| NAD-dependent DNA ligase [Idiomarina loihiensis L2TR] Length = 670 Score = 54.0 bits (128), Expect = 7e-05, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 17/47 (36%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L F + + + E L + + +A I FH+ Sbjct: 521 VGEATANALANHFKNLDALIAAESEQLQEVPDVGAVVAKHIVAFFHE 567 >gi|50084060|ref|YP_045570.1| DNA ligase [Acinetobacter sp. ADP1] gi|81393600|sp|Q6FDW0|DNLJ_ACIAD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|49530036|emb|CAG67748.1| DNA ligase [Acinetobacter sp. ADP1] Length = 676 Score = 54.0 bits (128), Expect = 7e-05, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 22/49 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I G+G R+L +F T+ + ++ E L + A IY+ F Sbjct: 522 GIRGVGETTARMLANTFQTLDALKQADIEALKKTPDVGDITAEWIYDFF 570 >gi|322368028|ref|ZP_08042597.1| Hef nuclease [Haladaptatus paucihalophilus DX253] gi|320552044|gb|EFW93689.1| Hef nuclease [Haladaptatus paucihalophilus DX253] Length = 806 Score = 54.0 bits (128), Expect = 7e-05, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 24/47 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 I IGP+ R LL F TV+ + +S + L EG+ + A +I Sbjct: 752 SIADIGPVTARALLSEFETVQAVMTASKDDLMETEGVGEITADRIRE 798 >gi|78042711|ref|YP_361151.1| DNA integrity scanning protein DisA [Carboxydothermus hydrogenoformans Z-2901] gi|119365931|sp|Q3A9N3|DISA_CARHZ RecName: Full=DNA integrity scanning protein disA gi|77994826|gb|ABB13725.1| putative DNA-binding protein [Carboxydothermus hydrogenoformans Z-2901] Length = 352 Score = 54.0 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 26/54 (48%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 LD+I + L+Q+FG +K I +S E L +EGI + A I K Sbjct: 290 ILDKIPRLPVAVIENLVQTFGNLKNIMSASIEELDDVEGIGEVRARSIKEGLKK 343 >gi|190359248|sp|A9KCS0|DNLJ_COXBN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 670 Score = 54.0 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 6/65 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I G+G R L + F + ++ ++S ETL I I +A I+ Sbjct: 505 KSKKTTLPRFLYALGIRGVGDTIARTLARHFHELDLLMKASIETLQEIRDIGPVVAENIH 564 Query: 605 NHFHK 609 FH+ Sbjct: 565 AFFHQ 569 >gi|291299865|ref|YP_003511143.1| DNA ligase NAD-dependent [Stackebrandtia nassauensis DSM 44728] gi|290569085|gb|ADD42050.1| DNA ligase, NAD-dependent [Stackebrandtia nassauensis DSM 44728] Length = 749 Score = 54.0 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 26/52 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +GP+ R L FG + I + E LA+++G+ IA + F ++ Sbjct: 585 SIRHVGPVAARALATEFGDLDAIRDADEERLAAVDGVGPTIATAVKQWFAED 636 >gi|289522353|ref|ZP_06439207.1| DNA ligase, NAD-dependent [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504189|gb|EFD25353.1| DNA ligase, NAD-dependent [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 674 Score = 54.0 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 3/66 (4%) Query: 550 KKAAYSPL---DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 K S L I +G +L + F ++ ++++ + L+ I GI +IA I Sbjct: 503 KNRPLSRLIYALGIRYVGSRTAEILAERFKSMDNLAKADIQDLSDIPGIGPQIASSIVAF 562 Query: 607 FHKNTS 612 F + Sbjct: 563 FRDEKN 568 Score = 40.5 bits (93), Expect = 0.95, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 2/58 (3%) Query: 559 EINGIGPLRKRLLLQS--FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +I G+G L+ G + + E L S++ + K A K+ N + + + Sbjct: 449 DIKGLGEKIIEQLVDKKMIGGFADLYKLKKEDLISLDRMGPKSAEKLINAINSSKNRP 506 >gi|261868202|ref|YP_003256124.1| NAD-dependent DNA ligase LigA [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413534|gb|ACX82905.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans D11S-1] Length = 670 Score = 54.0 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 21/47 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L F T++ + + E L + + + +A +I+ + + Sbjct: 521 VGEATALNLANHFKTLEALQNADLEQLQQVPDVGEVVANRIFVFWRE 567 >gi|329766291|ref|ZP_08257838.1| ERCC4 domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137193|gb|EGG41482.1| ERCC4 domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 197 Score = 54.0 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 7/71 (9%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY------ 604 K S L + GIG +LQ FGT + ++ LA +EG+ A KI Sbjct: 123 KQQLSSLCSLPGIGEKFAVRMLQKFGTPLKVFTATTSELAKVEGLGDARAKKIKHVLESQ 182 Query: 605 -NHFHKNTSHT 614 H ++ T Sbjct: 183 SKHLKESNQKT 193 >gi|225419696|ref|ZP_03761999.1| hypothetical protein CLOSTASPAR_06034 [Clostridium asparagiforme DSM 15981] gi|225041660|gb|EEG51906.1| hypothetical protein CLOSTASPAR_06034 [Clostridium asparagiforme DSM 15981] Length = 654 Score = 54.0 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Query: 559 EINGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I GIG + L + FG + + ++ E L +++GI +A +F ++ Sbjct: 497 GIAGIGLANAKALCRHFGYEFENMRKADEEELVAVDGIGAVLAKAWMEYFSSEANN 552 >gi|157691416|ref|YP_001485878.1| NAD-dependent DNA ligase LigA [Bacillus pumilus SAFR-032] gi|190359234|sp|A8FAQ1|DNLJ_BACP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157680174|gb|ABV61318.1| DNA ligase (NAD(+)) [Bacillus pumilus SAFR-032] Length = 668 Score = 54.0 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 24/49 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 IG + L FG + + +++ E L ++ I +K+A + +F K Sbjct: 515 IGSKAAKTLALHFGDIDQLKQATKEQLLEVDEIGEKMADAVVTYFEKEE 563 >gi|229496499|ref|ZP_04390213.1| DNA ligase, NAD-dependent [Porphyromonas endodontalis ATCC 35406] gi|229316396|gb|EEN82315.1| DNA ligase, NAD-dependent [Porphyromonas endodontalis ATCC 35406] Length = 671 Score = 54.0 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 28/45 (62%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G ++L ++F +++ + +S E L +I+GI ++IA I + F Sbjct: 514 VGENVAKILTRTFNSIETLMEASQEELQTIDGIGERIAESIVSFF 558 >gi|91788454|ref|YP_549406.1| DNA ligase [Polaromonas sp. JS666] gi|123164833|sp|Q12AD4|DNLJ_POLSJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|91697679|gb|ABE44508.1| DNA ligase, NAD-dependent [Polaromonas sp. JS666] Length = 706 Score = 54.0 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 6/63 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I +G + L + FG + I ++ E L ++ + +A I Sbjct: 535 KSKQTTLPRFLFGLGIRHVGEATAKELARHFGNLDAIMDATQEQLLAVSDVGSIVAQSIR 594 Query: 605 NHF 607 F Sbjct: 595 TFF 597 >gi|227540068|ref|ZP_03970117.1| DNA ligase (NAD(+)) [Sphingobacterium spiritivorum ATCC 33300] gi|227240084|gb|EEI90099.1| DNA ligase (NAD(+)) [Sphingobacterium spiritivorum ATCC 33300] Length = 673 Score = 54.0 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 26/50 (52%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I +G + L F + ++++S E +AS++ I +IA ++ + + Sbjct: 518 GIRHVGETIAKKLALYFKNIDALAQASVEEIASVQDIGGRIAESVHQYLN 567 >gi|82701780|ref|YP_411346.1| DNA ligase, NAD-dependent [Nitrosospira multiformis ATCC 25196] gi|123754406|sp|Q2YBB7|DNLJ_NITMU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|82409845|gb|ABB73954.1| DNA ligase, NAD-dependent [Nitrosospira multiformis ATCC 25196] Length = 707 Score = 54.0 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G R L + FG + + + ETL + + +A I + F Sbjct: 524 GIRNVGEATARDLARYFGGLDRLMDADVETLQQVSDVGPVVAQSIADFF 572 >gi|332704021|ref|ZP_08424109.1| DNA ligase [Desulfovibrio africanus str. Walvis Bay] gi|332554170|gb|EGJ51214.1| DNA ligase [Desulfovibrio africanus str. Walvis Bay] Length = 771 Score = 54.0 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G RLL F + + ++ + L + GIS KI+ I + F + + Sbjct: 609 GIPHVGEETARLLASRFRDLDALGAATRQELEELPGISDKISESIVDFFLNEANRS 664 >gi|319951546|ref|ZP_08025350.1| NAD-dependent DNA ligase LigA [Dietzia cinnamea P4] gi|319434794|gb|EFV90110.1| NAD-dependent DNA ligase LigA [Dietzia cinnamea P4] Length = 726 Score = 54.0 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 25/49 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FGT++ I +S + LA +G+ + IA + F Sbjct: 557 SIRHVGPTAARALATRFGTMEAIRAASDQELAETDGVGQTIAASVVEWF 605 >gi|225028066|ref|ZP_03717258.1| hypothetical protein EUBHAL_02336 [Eubacterium hallii DSM 3353] gi|224954614|gb|EEG35823.1| hypothetical protein EUBHAL_02336 [Eubacterium hallii DSM 3353] Length = 653 Score = 54.0 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 559 EINGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +G RLL + FG +++ + +S E + I+GI + IA ++++F Sbjct: 496 GILNVGSSNARLLCRHFGNSLENLRGASVEEMTQIDGIGEVIATSVHDYFENE 548 >gi|307111014|gb|EFN59249.1| hypothetical protein CHLNCDRAFT_19196 [Chlorella variabilis] Length = 297 Score = 54.0 bits (128), Expect = 9e-05, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 27/54 (50%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L + G+ + L FG+V +I ++S E L + GI A +++ FH+ Sbjct: 181 ALTVVRGVNKTDVKTLGDRFGSVAVIFKASAEELQACPGIGPTKARRLHETFHQ 234 >gi|300771799|ref|ZP_07081670.1| NAD-dependent DNA ligase LigA [Sphingobacterium spiritivorum ATCC 33861] gi|300761185|gb|EFK58010.1| NAD-dependent DNA ligase LigA [Sphingobacterium spiritivorum ATCC 33861] Length = 673 Score = 53.6 bits (127), Expect = 9e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 26/50 (52%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I +G + L F + ++++S E +AS++ I +IA ++ + + Sbjct: 518 GIRHVGETIAKKLALYFKNIDALAQASVEEIASVQDIGGRIAESVHQYLN 567 >gi|254172045|ref|ZP_04878721.1| DEAD/DEAH box helicase domain protein [Thermococcus sp. AM4] gi|214033941|gb|EEB74767.1| DEAD/DEAH box helicase domain protein [Thermococcus sp. AM4] Length = 720 Score = 53.6 bits (127), Expect = 9e-05, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L ++ IG R R L + F V+ I+ + P L +EGI KI IY + Sbjct: 646 ELVKLPNIGRKRARALYNAGFKNVEAIANAKPAELLEVEGIGAKILDGIYRYL 698 >gi|188586920|ref|YP_001918465.1| helicase, RecD/TraA family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351607|gb|ACB85877.1| helicase, RecD/TraA family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 726 Score = 53.6 bits (127), Expect = 9e-05, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%) Query: 560 INGIGPLRKRLLLQSFGT--VKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I GIGP L++ FG +++I +PE L + GI K+ A +I F ++ Sbjct: 92 IKGIGPKTAESLVEHFGKEVLQVIEN-TPEKLQEVPGIGKEKAAQISRGFQEH 143 >gi|111023430|ref|YP_706402.1| NAD-dependent DNA ligase LigA [Rhodococcus jostii RHA1] gi|123045472|sp|Q0S2J2|DNLJ_RHOSR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|110822960|gb|ABG98244.1| DNA ligase (NAD+) [Rhodococcus jostii RHA1] Length = 696 Score = 53.6 bits (127), Expect = 9e-05, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 25/49 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG++ I SS E LA+++G+ IA + F Sbjct: 534 SIRHVGPTAARALAGEFGSLARIRESSVEELAAVDGVGGTIAAAVAEWF 582 >gi|237745525|ref|ZP_04576005.1| DNA ligase [Oxalobacter formigenes HOxBLS] gi|229376876|gb|EEO26967.1| DNA ligase [Oxalobacter formigenes HOxBLS] Length = 685 Score = 53.6 bits (127), Expect = 9e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 3/63 (4%) Query: 548 RRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 R ++ S I +G R L + FG ++ + ++ E L ++ I +A I Sbjct: 513 RSRETTLSRFLYALGIRHVGETTARSLAEHFGNLQDLMNATEEQLLEVDDIGPVVALSIR 572 Query: 605 NHF 607 F Sbjct: 573 QFF 575 >gi|194016164|ref|ZP_03054779.1| DNA ligase, NAD-dependent [Bacillus pumilus ATCC 7061] gi|194012519|gb|EDW22086.1| DNA ligase, NAD-dependent [Bacillus pumilus ATCC 7061] Length = 668 Score = 53.6 bits (127), Expect = 9e-05, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 24/49 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 IG + L FG + + +++ + L ++ I +K+A + +F K Sbjct: 515 IGSKAAKTLAMHFGDIDQLKQATKDQLLEVDEIGEKMADAVVTYFEKEE 563 >gi|256839697|ref|ZP_05545206.1| DNA ligase, NAD-dependent [Parabacteroides sp. D13] gi|256738627|gb|EEU51952.1| DNA ligase, NAD-dependent [Parabacteroides sp. D13] Length = 664 Score = 53.6 bits (127), Expect = 9e-05, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 37/81 (45%), Gaps = 14/81 (17%) Query: 548 RRKKAAYSPLDE--------------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 + + S L+E I +G + L+ +F +++ + ++S E L +++ Sbjct: 485 KSAQNLMSSLEESKQVPFERVLFGLGIRFVGETVAKRLVSAFHSIEALEQASLEDLVAVD 544 Query: 594 GISKKIACKIYNHFHKNTSHT 614 I ++IA + ++F + T Sbjct: 545 EIGERIAQSVLSYFSDEKNRT 565 >gi|150007448|ref|YP_001302191.1| DNA ligase [Parabacteroides distasonis ATCC 8503] gi|298375424|ref|ZP_06985381.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_19] gi|166216223|sp|A6LA55|DNLJ_PARD8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|149935872|gb|ABR42569.1| DNA ligase [Parabacteroides distasonis ATCC 8503] gi|298267924|gb|EFI09580.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_19] Length = 664 Score = 53.6 bits (127), Expect = 9e-05, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 37/81 (45%), Gaps = 14/81 (17%) Query: 548 RRKKAAYSPLDE--------------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 + + S L+E I +G + L+ +F +++ + ++S E L +++ Sbjct: 485 KSAQNLMSSLEESKQVPFERVLFGLGIRFVGETVAKRLVSAFHSIEALEQASLEDLVAVD 544 Query: 594 GISKKIACKIYNHFHKNTSHT 614 I ++IA + ++F + T Sbjct: 545 EIGERIAQSVLSYFSDEKNRT 565 >gi|118575222|ref|YP_874965.1| helicase-associated endonuclease for fork-structured DNA [Cenarchaeum symbiosum A] gi|118193743|gb|ABK76661.1| helicase-associated endonuclease for fork-structured DNA [Cenarchaeum symbiosum A] Length = 231 Score = 53.6 bits (127), Expect = 9e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 24/58 (41%) Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +K S L + G+G +L+ FGT +S L+ + G+ A KI Sbjct: 157 QKQQLSSLSSLPGVGEKLAGRMLEKFGTPLRTFNASSAELSKVAGLGPSRAKKIRKML 214 >gi|168334213|ref|ZP_02692416.1| DNA ligase, NAD-dependent [Epulopiscium sp. 'N.t. morphotype B'] Length = 639 Score = 53.6 bits (127), Expect = 9e-05, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 15/78 (19%) Query: 538 HRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSF-GTVKMISRSSPETLASIEGIS 596 HRF + L I +G +L+ + F + I +S E L IEGI Sbjct: 480 HRFV-------------TAL-GIPQVGVENAKLICKYFXDNLDAIRAASEEELHDIEGIG 525 Query: 597 KKIACKIYNHFHKNTSHT 614 IA +IY +F+ + Sbjct: 526 SLIAKEIYRYFNNEENKQ 543 >gi|149180346|ref|ZP_01858851.1| hypothetical protein BSG1_04985 [Bacillus sp. SG-1] gi|148852538|gb|EDL66683.1| hypothetical protein BSG1_04985 [Bacillus sp. SG-1] Length = 137 Score = 53.6 bits (127), Expect = 9e-05, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 2/73 (2%) Query: 14 QMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLE 73 +I +L+VGKA L++R+K ++ N + ++ I +E + E Sbjct: 61 LFYNINDDLLFVGKARKLRQRVKKHLEDNVSPLKPYR--EEVYRIDVMYVEDPMEREIYE 118 Query: 74 ANMIKRLKPRFNI 86 +I L+ ++N+ Sbjct: 119 TYLINTLQAKYNV 131 >gi|315224924|ref|ZP_07866743.1| DNA protecting protein DprA [Capnocytophaga ochracea F0287] gi|314945037|gb|EFS97067.1| DNA protecting protein DprA [Capnocytophaga ochracea F0287] Length = 364 Score = 53.6 bits (127), Expect = 9e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH--FHKNTSH 613 L +I IG + + L+ FG+ + + L + GI KI I + H+ + Sbjct: 10 ALKKIPLIGDITAKKLISHFGSAQNVFAQPKSALEKVAGIGSKITQNILSARCLHEAETE 69 >gi|308174953|ref|YP_003921658.1| excinuclease [Bacillus amyloliquefaciens DSM 7] gi|307607817|emb|CBI44188.1| putative excinuclease [Bacillus amyloliquefaciens DSM 7] gi|328554960|gb|AEB25452.1| excinuclease [Bacillus amyloliquefaciens TA208] gi|328913273|gb|AEB64869.1| putative excinuclease [Bacillus amyloliquefaciens LL3] Length = 124 Score = 53.6 bits (127), Expect = 9e-05, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G++ +I +L+VGKA L++RIK + N + ++ I V +E Sbjct: 45 GIFMFYNIHDELLFVGKARKLRQRIKKHFEDNVSPVKHHR--DEVYKIEVCVVNDPMERD 102 Query: 71 LLEANMIKRLKPRFNI 86 + E I L+ ++NI Sbjct: 103 IYETYAINTLQSKYNI 118 >gi|256819503|ref|YP_003140782.1| DNA protecting protein DprA [Capnocytophaga ochracea DSM 7271] gi|256581086|gb|ACU92221.1| DNA protecting protein DprA [Capnocytophaga ochracea DSM 7271] Length = 364 Score = 53.6 bits (127), Expect = 9e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH--FHKNTSH 613 L +I IG + + L+ FG+ + + L + GI KI I + H+ + Sbjct: 10 ALKKIPLIGDITAKKLISHFGSAQNVFAQPKSALEKVAGIGSKITQNILSARCLHEAETE 69 >gi|145640786|ref|ZP_01796369.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021] gi|145274712|gb|EDK14575.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 22.4-21] Length = 150 Score = 53.6 bits (127), Expect = 9e-05, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 20/46 (43%) Query: 564 GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 G L F T+ + ++ E L + + + +A +I+ + + Sbjct: 2 GEATALNLANHFKTLDALKDANLEELQQVPDVGEVVANRIFIFWRE 47 >gi|322373465|ref|ZP_08048001.1| DNA ligase, NAD-dependent [Streptococcus sp. C150] gi|321278507|gb|EFX55576.1| DNA ligase, NAD-dependent [Streptococcus sp. C150] Length = 652 Score = 53.6 bits (127), Expect = 9e-05, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 30/53 (56%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G + LL++F T+K ++ + E +A+++G+ + IA I +F K Sbjct: 502 GIRHVGAKVSKQLLEAFETIKDLASADVEAIAAVDGLGEVIAKSIQRYFVKEE 554 >gi|39995996|ref|NP_951947.1| DNA ligase, NAD-dependent [Geobacter sulfurreducens PCA] gi|81702997|sp|Q74ER9|DNLJ_GEOSL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|39982761|gb|AAR34220.1| DNA ligase, NAD-dependent [Geobacter sulfurreducens PCA] gi|298505011|gb|ADI83734.1| DNA ligase, NAD-dependent [Geobacter sulfurreducens KN400] Length = 670 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 27/54 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G +LL +FG+++ + R++ E L SI + ++A I F + Sbjct: 518 GIRHVGEHTAKLLAGAFGSIENLERATEEELLSIREVGPQVARSIITFFRNEGN 571 >gi|321309600|ref|YP_004191929.1| DNA ligase [Mycoplasma haemofelis str. Langford 1] gi|319801444|emb|CBY92090.1| DNA ligase [Mycoplasma haemofelis str. Langford 1] Length = 662 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 547 KRRKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K R + ++ L I IG L+ FG++ + +S E L SI+GI +K A I Sbjct: 495 KSRNRESHKILCGLGIEFIGEEVANLIFGHFGSIDEVLSASKEELMSIDGIGEKCAESII 554 Query: 605 NH 606 Sbjct: 555 QW 556 >gi|296140594|ref|YP_003647837.1| DNA ligase, NAD-dependent [Tsukamurella paurometabola DSM 20162] gi|296028728|gb|ADG79498.1| DNA ligase, NAD-dependent [Tsukamurella paurometabola DSM 20162] Length = 688 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L Q G+++ I+ + + LA ++G+ + IA + F Sbjct: 529 SIRHVGPSAARALAQELGSLEAIAAADVDQLAEVDGVGRVIAEAVVEWF 577 >gi|91791658|ref|YP_561309.1| nuclease [Shewanella denitrificans OS217] gi|91713660|gb|ABE53586.1| nuclease [Shewanella denitrificans OS217] Length = 51 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 21/47 (44%) Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +GP LL F V+ + +S L ++GI K+ A KI Sbjct: 2 PDVGPKLASRLLHHFNNVEAVFIASEAALMQVDGIGKQKAKKIREIL 48 >gi|258592875|emb|CBE69184.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [NC10 bacterium 'Dutch sediment'] Length = 684 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 26/50 (52%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G +L + +G++ + ++ E LA I GI +IA + +F + + Sbjct: 530 VGEHVATILARHYGSMDRLEQAPEEELAEIFGIGPRIAQSVALYFRQPEN 579 >gi|313898151|ref|ZP_07831690.1| DNA ligase (NAD+) [Clostridium sp. HGF2] gi|312957179|gb|EFR38808.1| DNA ligase (NAD+) [Clostridium sp. HGF2] Length = 665 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 6/64 (9%) Query: 552 AAYSPLDE-ING-----IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 + +PL++ I G +G ++L + F ++ + ++ E L +I+ I + A I Sbjct: 495 SKQNPLEDLIYGLGIRQVGKKAAKVLAKHFLSMDALMAANEEELVAIKDIGQITAESITA 554 Query: 606 HFHK 609 FH+ Sbjct: 555 FFHE 558 >gi|260581847|ref|ZP_05849643.1| DNA ligase, NAD-dependent [Haemophilus influenzae NT127] gi|260095040|gb|EEW78932.1| DNA ligase, NAD-dependent [Haemophilus influenzae NT127] Length = 679 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 7/47 (14%), Positives = 20/47 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L F T+ + + + L + + + +A +I+ + + Sbjct: 530 VGEATALNLANHFKTLDALKAADLDQLQQVPDVGEVVANRIFIFWRE 576 >gi|301169841|emb|CBW29445.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae 10810] Length = 670 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 21/47 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L F T+ + ++ E L + + + +A +I+ + + Sbjct: 521 VGEATALNLANHFKTLDTLKDANLEELQQVPDVGEVVANRIFIFWRE 567 >gi|242398904|ref|YP_002994328.1| Putative ski2-type helicase [Thermococcus sibiricus MM 739] gi|242265297|gb|ACS89979.1| Putative ski2-type helicase [Thermococcus sibiricus MM 739] Length = 744 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L + IG R R L + F + I R+ L +EGI + KIY HF Sbjct: 669 ELITLPMIGRKRARALYNAGFKGIDDIVRAKASELLKVEGIGIGVIEKIYQHF 721 >gi|145630192|ref|ZP_01785974.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021] gi|144984473|gb|EDJ91896.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021] Length = 670 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 21/47 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L F T+ + ++ E L + + + +A +I+ + + Sbjct: 521 VGEATALNLANHFKTLDTLKDANLEELQQVPDVGEVVANRIFIFWRE 567 >gi|57641834|ref|YP_184312.1| DNA repair and recombination protein RadA [Thermococcus kodakarensis KOD1] gi|73913728|sp|Q5JET4|RADA_PYRKO RecName: Full=DNA repair and recombination protein radA; Contains: RecName: Full=Pko radA intein gi|57160158|dbj|BAD86088.1| RadA/Rad51 recombinase [Thermococcus kodakarensis KOD1] Length = 836 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Query: 555 SPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 S L+++ G+GP L ++ + T++ I+ +SP L I GIS+ A KI + + Sbjct: 40 SALEDLPGVGPATAEKLREAGYDTIEAIAVASPLELKEIAGISEGAALKIIQAAREAAN 98 >gi|289579915|ref|YP_003478381.1| ribosomal protein L32e [Natrialba magadii ATCC 43099] gi|289529468|gb|ADD03819.1| Ribosomal protein L32e [Natrialba magadii ATCC 43099] Length = 240 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L++I+G+G + L ++ F +++ + + + LA +G+ +A +I Sbjct: 10 ELEDISGVGASKADALREAGFESIEDVKEADQDELAEADGVGNALAARIKA 60 >gi|193213418|ref|YP_001999371.1| DNA protecting protein DprA [Chlorobaculum parvum NCIB 8327] gi|193086895|gb|ACF12171.1| DNA protecting protein DprA [Chlorobaculum parvum NCIB 8327] Length = 387 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 26/46 (56%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 L ++ GIGP R R ++ +FG+ + + E L I GI K +A + Sbjct: 17 LSKLPGIGPARARTMIATFGSGSTLLEADAEALIQIPGIGKTLARQ 62 >gi|326797492|ref|YP_004315311.1| DNA ligase [Sphingobacterium sp. 21] gi|326548256|gb|ADZ76641.1| DNA ligase [Sphingobacterium sp. 21] Length = 672 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 25/45 (55%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + L SF + + ++S E +A+++ I ++IA + +F Sbjct: 522 VGETIAKKLANSFKNIDNLIQASVEEIAAVDEIGERIAQSVKEYF 566 >gi|257484569|ref|ZP_05638610.1| excinuclease ABC subunit C [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 75 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 35/75 (46%) Query: 340 IIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCM 399 + A+ NA ++ T +L+ + K L P R+E YD SH G + V Sbjct: 1 WQQMAVTNAEQALTARLANRQHVASRFEALAKVLGLEDPPMRLECYDISHSSGEATVASC 60 Query: 400 VVVGENGFVKNQYRK 414 VV G G +K+ YR+ Sbjct: 61 VVFGPEGPIKSDYRR 75 >gi|219870289|ref|YP_002474664.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis SH0165] gi|254781340|sp|B8F314|DNLJ_HAEPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|219690493|gb|ACL31716.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis SH0165] Length = 675 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 25/47 (53%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G + L FGT+ I ++ +TL ++ + + +A +++ + + Sbjct: 523 VGESTAQNLANHFGTLDAIRQADLDTLKQVQDVGEVVANRLFQFWQE 569 >gi|167855687|ref|ZP_02478444.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis 29755] gi|167853205|gb|EDS24462.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis 29755] Length = 675 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 25/47 (53%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G + L FGT+ I ++ +TL ++ + + +A +++ + + Sbjct: 523 VGESTAQNLANHFGTLDAIRQADLDTLKQVQDVGEVVANRLFQFWQE 569 >gi|167549563|ref|ZP_02343322.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205325268|gb|EDZ13107.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 671 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + ++ + L + + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLETLQAATIDELQKVPDVGIVVATHVFNFFAEESN 569 >gi|240102927|ref|YP_002959236.1| ski2-like helicase [Thermococcus gammatolerans EJ3] gi|239910481|gb|ACS33372.1| ski2-type helicase, putative [Thermococcus gammatolerans EJ3] Length = 720 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%) Query: 545 HRKRRKKAAYSPLDEI--NGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIAC 601 H + R L+ + IG R R L + F +V+ I+ + P L ++EGI KI Sbjct: 633 HLRLRHGVREELLELVRLPNIGRKRARALYNAGFRSVEAIANAKPAELLAVEGIGAKILD 692 Query: 602 KIYNHF 607 IY H Sbjct: 693 GIYRHL 698 >gi|75763327|ref|ZP_00743070.1| UvrC-like protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489188|gb|EAO52661.1| UvrC-like protein [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 87 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G++ +I +L+VGKA +++RIK + N + ++ I + E Sbjct: 8 GIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSPIKNHR--DEVYRIDACIVEDPTERE 65 Query: 71 LLEANMIKRLKPRFNI 86 + E +I K ++N+ Sbjct: 66 IYETYIINEYKAKYNV 81 >gi|154685157|ref|YP_001420318.1| NAD-dependent DNA ligase LigA [Bacillus amyloliquefaciens FZB42] gi|166215394|sp|A7Z261|DNLJ_BACA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|154351008|gb|ABS73087.1| LigA [Bacillus amyloliquefaciens FZB42] Length = 669 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 32/66 (48%), Gaps = 6/66 (9%) Query: 550 KKAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 +K+ + L+ I IG + L F +++ + + + E L +++ I +K+A + Sbjct: 497 QKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKQVTEEELLAVDEIGEKMADAV 556 Query: 604 YNHFHK 609 +F K Sbjct: 557 ITYFRK 562 >gi|52313150|emb|CAH55605.1| DNA ligase (NAD dependent) [Bacillus amyloliquefaciens FZB42] Length = 668 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 32/66 (48%), Gaps = 6/66 (9%) Query: 550 KKAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 +K+ + L+ I IG + L F +++ + + + E L +++ I +K+A + Sbjct: 496 QKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKQVTEEELLAVDEIGEKMADAV 555 Query: 604 YNHFHK 609 +F K Sbjct: 556 ITYFRK 561 >gi|260893478|ref|YP_003239575.1| Holliday junction DNA helicase RuvA [Ammonifex degensii KC4] gi|260865619|gb|ACX52725.1| Holliday junction DNA helicase RuvA [Ammonifex degensii KC4] Length = 193 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKIYNHFHKNT 611 L +I G+GP LL F +V+ + + E L + G+ KK A ++ + Sbjct: 74 RLLKIGGVGPKTALALLSCF-SVEELREAIRSEDLEKLTVVPGVGKKTARRLLLELKEEK 132 Query: 612 SHT 614 Sbjct: 133 GAP 135 >gi|198274661|ref|ZP_03207193.1| hypothetical protein BACPLE_00817 [Bacteroides plebeius DSM 17135] gi|198272108|gb|EDY96377.1| hypothetical protein BACPLE_00817 [Bacteroides plebeius DSM 17135] Length = 666 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 26/50 (52%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + + ++F ++ + ++ + L ++ I +KIA I +FH + Sbjct: 515 VGETVAKKVARAFRSIDDLKSATLDDLIHVDEIGEKIAQSILRYFHSEKN 564 >gi|148272584|ref|YP_001222145.1| NAD-dependent DNA ligase LigA [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|166215575|sp|A5CQU5|DNLJ_CLAM3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|147830514|emb|CAN01449.1| NAD-dependant DNA ligase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 853 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 27/49 (55%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP+ R L FG++ I +S E LA+++G+ IA + + F Sbjct: 606 SIRHVGPVAARALAGWFGSLDAIRSASREELAAVDGVGGIIADALLDWF 654 >gi|126652417|ref|ZP_01724590.1| hypothetical protein BB14905_14165 [Bacillus sp. B14905] gi|126590838|gb|EAZ84952.1| hypothetical protein BB14905_14165 [Bacillus sp. B14905] Length = 123 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 2/76 (2%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G++ + +L+VGKA +++RIK + N + ++ I +E Sbjct: 45 GIFLFYNEKNELLFVGKARKIRQRIKKHFEDNVSPLKNYR--DEVFKIEVYEVEDPMERE 102 Query: 71 LLEANMIKRLKPRFNI 86 + E I + ++N+ Sbjct: 103 IYETYAINTFRSKYNV 118 >gi|262276434|ref|ZP_06054243.1| DNA ligase [Grimontia hollisae CIP 101886] gi|262220242|gb|EEY71558.1| DNA ligase [Grimontia hollisae CIP 101886] Length = 670 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 6/71 (8%) Query: 550 KKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 KA + L I +G L F T + I ++ E L ++ + +A + Sbjct: 501 SKAKETTLPRFIYSLGIREVGEATAANLANHFFTFEAIREATEEQLIEVQDVGVIVAKHV 560 Query: 604 YNHFHKNTSHT 614 N F++ + T Sbjct: 561 VNFFNEEHNKT 571 >gi|284037426|ref|YP_003387356.1| DNA ligase, NAD-dependent [Spirosoma linguale DSM 74] gi|283816719|gb|ADB38557.1| DNA ligase, NAD-dependent [Spirosoma linguale DSM 74] Length = 696 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 17/76 (22%) Query: 549 RKKAAYSPLDEIN--------------GI---GPLRKRLLLQSFGTVKMISRSSPETLAS 591 R+K + L I GI G L+ FG++ I ++ E L + Sbjct: 514 REKTVENILTAIERSKSQPFANVLFGLGIRYVGNTTAEKLVDYFGSMDAIMNATQEQLLA 573 Query: 592 IEGISKKIACKIYNHF 607 + +IA + F Sbjct: 574 VPDTGPRIAESVVAWF 589 >gi|52079149|ref|YP_077940.1| NAD-dependent DNA ligase LigA [Bacillus licheniformis ATCC 14580] gi|52784516|ref|YP_090345.1| NAD-dependent DNA ligase LigA [Bacillus licheniformis ATCC 14580] gi|319647076|ref|ZP_08001302.1| DNA ligase [Bacillus sp. BT1B_CT2] gi|81386291|sp|Q65MR2|DNLJ_BACLD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|52002360|gb|AAU22302.1| DNA ligase [Bacillus licheniformis ATCC 14580] gi|52347018|gb|AAU39652.1| LigA [Bacillus licheniformis ATCC 14580] gi|317390900|gb|EFV71701.1| DNA ligase [Bacillus sp. BT1B_CT2] Length = 667 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 6/65 (9%) Query: 551 KAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L+ I IG + L F T+ + +++ E L ++ I K+A + Sbjct: 496 KSKKNSLERLLFGLGIRFIGAKAAKTLAMHFETLDKLKKATKEELIEVDEIGDKMADALV 555 Query: 605 NHFHK 609 +F K Sbjct: 556 TYFEK 560 >gi|311278661|ref|YP_003940892.1| DNA ligase, NAD-dependent [Enterobacter cloacae SCF1] gi|308747856|gb|ADO47608.1| DNA ligase, NAD-dependent [Enterobacter cloacae SCF1] Length = 671 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 8/50 (16%), Positives = 25/50 (50%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L +G+++ + +S + L ++ + +A ++N F + ++ Sbjct: 520 VGEATAAGLAAHYGSLEALIAASIDDLQTVPDVGIVVATHVFNFFAEESN 569 >gi|183981708|ref|YP_001849999.1| NAD-dependent DNA ligase LigA [Mycobacterium marinum M] gi|254781377|sp|B2HIF0|DNLJ_MYCMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|183175034|gb|ACC40144.1| DNA ligase [NAD dependent] LigA [Mycobacterium marinum M] Length = 687 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 25/49 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG++ I ++ E LA++EG+ IA + F Sbjct: 525 SIRHVGPTAARALATEFGSIDAIVSATTEQLAAVEGVGPTIASAVSEWF 573 >gi|166216288|sp|Q0HWD2|DNLJ_SHESR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 688 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 22/45 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G L FG+++ + ++ E L +E I + +A + + F Sbjct: 538 VGEATAANLATHFGSLEALRVATIEQLIQVEDIGEVVAQHVAHFF 582 >gi|118617527|ref|YP_905859.1| NAD-dependent DNA ligase LigA [Mycobacterium ulcerans Agy99] gi|166216215|sp|A0PPW9|DNLJ_MYCUA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|118569637|gb|ABL04388.1| DNA ligase [NAD dependent] LigA [Mycobacterium ulcerans Agy99] Length = 683 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 25/49 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG++ I ++ E LA++EG+ IA + F Sbjct: 521 SIRHVGPTAARALATEFGSIDAIVAATTEQLAAVEGVGPTIASAVSEWF 569 >gi|114047080|ref|YP_737630.1| DNA ligase, NAD-dependent [Shewanella sp. MR-7] gi|113888522|gb|ABI42573.1| DNA ligase, NAD-dependent [Shewanella sp. MR-7] Length = 690 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 22/45 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G L FG+++ + ++ E L +E I + +A + + F Sbjct: 540 VGEATAANLATHFGSLEALRVATIEQLIQVEDIGEVVAQHVAHFF 584 >gi|169828520|ref|YP_001698678.1| hypothetical protein Bsph_3027 [Lysinibacillus sphaericus C3-41] gi|168993008|gb|ACA40548.1| Hypothetical yurQ protein [Lysinibacillus sphaericus C3-41] Length = 126 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 2/76 (2%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G++ + +L+VGKA +++RIK + N + ++ I +E Sbjct: 48 GIFLFYNEKNELLFVGKARKIRQRIKKHFEDNVSPMKNYR--DEVFKIEVYEVEDPMERE 105 Query: 71 LLEANMIKRLKPRFNI 86 + E I + ++N+ Sbjct: 106 IYETYAINTFRSKYNV 121 >gi|167770441|ref|ZP_02442494.1| hypothetical protein ANACOL_01786 [Anaerotruncus colihominis DSM 17241] gi|167667036|gb|EDS11166.1| hypothetical protein ANACOL_01786 [Anaerotruncus colihominis DSM 17241] Length = 664 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 25/49 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I GIG +LL Q FGT+ + +S E +A I+G +A + F Sbjct: 513 GIRGIGQRSAQLLAQRFGTMDGVLAASVEEIAQIDGFGGIMAQNTADFF 561 >gi|148927169|ref|ZP_01810794.1| DNA ligase, NAD-dependent [candidate division TM7 genomosp. GTL1] gi|147887384|gb|EDK72833.1| DNA ligase, NAD-dependent [candidate division TM7 genomosp. GTL1] Length = 675 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G + FG++ I +++ + L +EG+ + +A I F Sbjct: 522 GIRHVGAQTAIDVTAHFGSLTAIRQATIDQLHEVEGVGEVVAESIVAWF 570 >gi|295704091|ref|YP_003597166.1| GIY-YIG catalytic domain-containing protein [Bacillus megaterium DSM 319] gi|294801750|gb|ADF38816.1| GIY-YIG catalytic domain protein [Bacillus megaterium DSM 319] Length = 266 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 42/88 (47%), Gaps = 9/88 (10%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAY--NLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 Q+P PG+Y D GR+LY+G A +L +R+++++ ++ +I + + Sbjct: 24 QLPSAPGIYFFFDKPGRLLYIG-ATTGSLLERVRAHVAGKGVSN-TKKFHKEICAVGYIE 81 Query: 63 TCT---EVEALLLEANMIKRLKPRFNIL 87 E++ +L ++ P++N Sbjct: 82 VHGLKKELD--MLRTMLVNGYFPKYNKQ 107 >gi|124267002|ref|YP_001021006.1| DNA ligase (NAD+) [Methylibium petroleiphilum PM1] gi|166215820|sp|A2SGT2|DNLJ_METPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|124259777|gb|ABM94771.1| DNA ligase (NAD+) [Methylibium petroleiphilum PM1] Length = 677 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 2/58 (3%) Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + +S I IG + L + FG + + +S E L + + +A + F Sbjct: 517 ARFLFS--LGIRHIGEATAKDLARHFGALDRVMDASVEQLLEVNDVGPVVAQSLRTFF 572 >gi|167631047|ref|YP_001681546.1| DNA ligase, nad-dependent [Heliobacterium modesticaldum Ice1] gi|254781344|sp|B0TDL0|DNLJ_HELMI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|167593787|gb|ABZ85535.1| DNA ligase, nad-dependent [Heliobacterium modesticaldum Ice1] Length = 675 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 23/45 (51%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + L + FG++ + +++ E L ++ I K+A + F Sbjct: 524 VGQTAAKTLARHFGSMDQLMKATTEELQAVSEIGPKMAESLQRWF 568 >gi|145633173|ref|ZP_01788905.1| DNA ligase [Haemophilus influenzae 3655] gi|144986399|gb|EDJ92978.1| DNA ligase [Haemophilus influenzae 3655] Length = 670 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 21/47 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L F T+ + ++ E L + + + +A +I+ + + Sbjct: 521 VGEATALNLANHFKTLDALKDANLEELQQVSDVGEVVANRIFIFWRE 567 >gi|293603951|ref|ZP_06686365.1| NAD-dependent DNA ligase LigA [Achromobacter piechaudii ATCC 43553] gi|292817644|gb|EFF76711.1| NAD-dependent DNA ligase LigA [Achromobacter piechaudii ATCC 43553] Length = 700 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 23/51 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G R + + FG++ I + E L+S+ + +A I F + Sbjct: 548 GIRHVGETTARDVARHFGSIDAIMDADEEALSSVPDVGPVVAASIRRFFAE 598 >gi|227830380|ref|YP_002832160.1| ERCC4 domain protein [Sulfolobus islandicus L.S.2.15] gi|229579198|ref|YP_002837596.1| ERCC4 domain protein [Sulfolobus islandicus Y.G.57.14] gi|229582050|ref|YP_002840449.1| ERCC4 domain protein [Sulfolobus islandicus Y.N.15.51] gi|284997886|ref|YP_003419653.1| ERCC4 domain protein [Sulfolobus islandicus L.D.8.5] gi|227456828|gb|ACP35515.1| ERCC4 domain protein [Sulfolobus islandicus L.S.2.15] gi|228009912|gb|ACP45674.1| ERCC4 domain protein [Sulfolobus islandicus Y.G.57.14] gi|228012766|gb|ACP48527.1| ERCC4 domain protein [Sulfolobus islandicus Y.N.15.51] gi|284445781|gb|ADB87283.1| ERCC4 domain protein [Sulfolobus islandicus L.D.8.5] Length = 233 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 + +G + LL FGT++ I +S L G S+K A IY + S T Sbjct: 162 ESFPNVGSVLAERLLLKFGTIQNICNASISELEKALG-SRKKAEDIYKILRAHYSKT 217 >gi|227827683|ref|YP_002829463.1| ERCC4 domain protein [Sulfolobus islandicus M.14.25] gi|227459479|gb|ACP38165.1| ERCC4 domain protein [Sulfolobus islandicus M.14.25] Length = 233 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 + +G + LL FGT++ I +S L G S+K A IY + S T Sbjct: 162 ESFPNVGSVLAERLLLKFGTIQNICNASISELEKALG-SRKKAEDIYKILRAHYSKT 217 >gi|223986795|ref|ZP_03636777.1| hypothetical protein HOLDEFILI_04100 [Holdemania filiformis DSM 12042] gi|223961228|gb|EEF65758.1| hypothetical protein HOLDEFILI_04100 [Holdemania filiformis DSM 12042] Length = 663 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 6/69 (8%) Query: 551 KAAYSPLDE------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 + + L++ I IG ++L F T++ + +++ E L I+ I A + Sbjct: 494 NSKQNSLEKLLYGLGIRQIGEKAAKILAYRFETMQALMQATYEELEEIKDIGAITAQTVL 553 Query: 605 NHFHKNTSH 613 + FH + Sbjct: 554 DFFHDEANQ 562 >gi|196250518|ref|ZP_03149209.1| DNA ligase, NAD-dependent [Geobacillus sp. G11MC16] gi|196210008|gb|EDY04776.1| DNA ligase, NAD-dependent [Geobacillus sp. G11MC16] Length = 670 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 25/45 (55%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G +LL + F T++ + ++ + L ++ I +K+A I +F Sbjct: 514 VGAKAAQLLAEHFETMERLEAATKDELMAVPEIGEKMADSITTYF 558 >gi|138893932|ref|YP_001124385.1| NAD-dependent DNA ligase LigA [Geobacillus thermodenitrificans NG80-2] gi|166215760|sp|A4IJY6|DNLJ_GEOTN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|134265445|gb|ABO65640.1| DNA ligase [Geobacillus thermodenitrificans NG80-2] Length = 670 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 25/45 (55%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G +LL + F T++ + ++ + L ++ I +K+A I +F Sbjct: 514 VGAKAAQLLAEHFETMERLEAATKDELMAVPEIGEKMADSITTYF 558 >gi|269836418|ref|YP_003318646.1| DNA protecting protein DprA [Sphaerobacter thermophilus DSM 20745] gi|269785681|gb|ACZ37824.1| DNA protecting protein DprA [Sphaerobacter thermophilus DSM 20745] Length = 359 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 + GIG R LL+ FG++ ++ E L + G+S+++A K+ Sbjct: 13 VPGIGATRVARLLEHFGSLAAAWEANVEELRAA-GLSERVAGKL 55 >gi|229584887|ref|YP_002843389.1| ERCC4 domain protein [Sulfolobus islandicus M.16.27] gi|238619854|ref|YP_002914680.1| ERCC4 domain protein [Sulfolobus islandicus M.16.4] gi|228019937|gb|ACP55344.1| ERCC4 domain protein [Sulfolobus islandicus M.16.27] gi|238380924|gb|ACR42012.1| ERCC4 domain protein [Sulfolobus islandicus M.16.4] gi|323474741|gb|ADX85347.1| nucleotide excision repair nuclease, Xpf [Sulfolobus islandicus REY15A] gi|323477469|gb|ADX82707.1| nucleotide excision repair nuclease, Xpf [Sulfolobus islandicus HVE10/4] Length = 233 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 + +G + LL FGT++ I +S L G S+K A IY + S T Sbjct: 162 ESFPNVGSVLAERLLLKFGTIQNICNASISELEKALG-SRKKAEDIYKILRAHYSKT 217 >gi|194466912|ref|ZP_03072899.1| DNA ligase, NAD-dependent [Lactobacillus reuteri 100-23] gi|194453948|gb|EDX42845.1| DNA ligase, NAD-dependent [Lactobacillus reuteri 100-23] Length = 680 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 25/49 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G R++++ FG + + ++ + +++I GI I I +F Sbjct: 523 GIRHVGAKAARIIMEHFGDLDSLMKADADEISAISGIGPTIGESIVTYF 571 >gi|302389647|ref|YP_003825468.1| DNA protecting protein DprA [Thermosediminibacter oceani DSM 16646] gi|302200275|gb|ADL07845.1| DNA protecting protein DprA [Thermosediminibacter oceani DSM 16646] Length = 359 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 24/51 (47%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 L+ I +G +R R LL F T ++ L + GIS+KI I + Sbjct: 9 ALNMIPNLGAVRIRELLNYFQTYSDFMNATRTRLLEVPGISEKICDVILEY 59 >gi|324112923|gb|EGC06899.1| DNA ligase [Escherichia fergusonii B253] Length = 671 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 23/50 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FGT++ + +S E L + + +A +N F + ++ Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHAHNFFAEESN 569 >gi|297202535|ref|ZP_06919932.1| DNA ligase, NAD-dependent [Streptomyces sviceus ATCC 29083] gi|197709937|gb|EDY53971.1| DNA ligase, NAD-dependent [Streptomyces sviceus ATCC 29083] Length = 730 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 28/52 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +GP+ L ++F ++ I ++S E LA+ +G+ IA + F ++ Sbjct: 562 SIRHVGPVAAEALARNFRSIDRIEQASEEELANTDGVGSIIAKSLKEWFAED 613 >gi|24374425|ref|NP_718468.1| DNA ligase, NAD-dependent [Shewanella oneidensis MR-1] gi|81460839|sp|Q8ED70|DNLJ_SHEON RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|24348997|gb|AAN55912.1|AE015728_1 DNA ligase, NAD-dependent [Shewanella oneidensis MR-1] Length = 689 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 21/45 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G L FG++ + ++ E L +E I + +A + + F Sbjct: 538 VGEATAANLAAHFGSLDALRIATIEQLIEVEDIGEVVAQHVAHFF 582 >gi|239928777|ref|ZP_04685730.1| NAD-dependent DNA ligase LigA [Streptomyces ghanaensis ATCC 14672] gi|291437098|ref|ZP_06576488.1| NAD-dependent DNA ligase LigA [Streptomyces ghanaensis ATCC 14672] gi|291339993|gb|EFE66949.1| NAD-dependent DNA ligase LigA [Streptomyces ghanaensis ATCC 14672] Length = 731 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 26/52 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +GP+ L ++F ++ I +S E L + EG+ + +A + F + Sbjct: 563 SIRHVGPVAAEALARAFRSIDRIEEASEEELKNTEGVGEIVAAAVKQWFAEE 614 >gi|323344237|ref|ZP_08084463.1| NAD-dependent DNA ligase LigA [Prevotella oralis ATCC 33269] gi|323094966|gb|EFZ37541.1| NAD-dependent DNA ligase LigA [Prevotella oralis ATCC 33269] Length = 665 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 23/45 (51%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G RL+ + F + + +S + L +EG+ + IA + +F Sbjct: 515 VGETSARLIARHFKNIDALMEASLQDLTEVEGVGEVIAKSVIAYF 559 >gi|327440267|dbj|BAK16632.1| nuclease subunit of the excinuclease complex [Solibacillus silvestris StLB046] Length = 126 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G++ + +L+VGKA +++RIK + N + ++I+ I +E Sbjct: 45 GIFFFYNEKNELLFVGKARKIRQRIKKHFEDNVSPMKNHR--AEIHKIEVYEIEDPMERE 102 Query: 71 LLEANMIKRLKPRFNI 86 + E I + + ++NI Sbjct: 103 IYETFAINQFQSKYNI 118 >gi|239825842|ref|YP_002948466.1| NAD-dependent DNA ligase LigA [Geobacillus sp. WCH70] gi|239806135|gb|ACS23200.1| DNA ligase, NAD-dependent [Geobacillus sp. WCH70] Length = 670 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 27/51 (52%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G ++L + FGT+ + ++ E L +I I +K+A I +F K Sbjct: 511 GIRHVGAKAAKVLAEHFGTMDRLQTATKEELMAIHEIGEKMADSIVTYFAK 561 >gi|212638096|ref|YP_002314616.1| NAD-dependent DNA ligase LigA [Anoxybacillus flavithermus WK1] gi|254781544|sp|B7GFV1|DNLJ_ANOFW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|212559576|gb|ACJ32631.1| NAD-dependent DNA ligase [Anoxybacillus flavithermus WK1] Length = 672 Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 27/53 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G + L + F T++ + +++ E L +I I +K+A I +F K Sbjct: 513 GIRHVGAKAAKTLAEHFETMERLQQATKEELMAIHEIGEKMADSIVTYFSKEE 565 >gi|148544657|ref|YP_001272027.1| DNA ligase, NAD-dependent [Lactobacillus reuteri DSM 20016] gi|184154010|ref|YP_001842351.1| NAD-dependent DNA ligase [Lactobacillus reuteri JCM 1112] gi|227363780|ref|ZP_03847887.1| DNA ligase, NAD-dependent [Lactobacillus reuteri MM2-3] gi|325682991|ref|ZP_08162507.1| NAD-dependent DNA ligase LigA [Lactobacillus reuteri MM4-1A] gi|209572830|sp|A5VLG6|DNLJ_LACRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781354|sp|B2G8T9|DNLJ_LACRJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|148531691|gb|ABQ83690.1| DNA ligase, NAD-dependent [Lactobacillus reuteri DSM 20016] gi|183225354|dbj|BAG25871.1| NAD-dependent DNA ligase [Lactobacillus reuteri JCM 1112] gi|227071137|gb|EEI09453.1| DNA ligase, NAD-dependent [Lactobacillus reuteri MM2-3] gi|324977341|gb|EGC14292.1| NAD-dependent DNA ligase LigA [Lactobacillus reuteri MM4-1A] Length = 680 Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 25/49 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G R++++ FG + + ++ + +++I GI I I +F Sbjct: 523 GIRHVGAKAARIIMEHFGDLDSLMKADADEISAISGIGPTIGESIVTYF 571 >gi|326799926|ref|YP_004317745.1| DNA protecting protein DprA [Sphingobacterium sp. 21] gi|326550690|gb|ADZ79075.1| DNA protecting protein DprA [Sphingobacterium sp. 21] Length = 364 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 L +I G+G + L+ G+ + + RSS + L I GI +++A I HK Sbjct: 8 ALTQIKGVGNTLAKQLIDHCGSAEEVFRSSKKQLMLIPGIGERVAGNI---LHKE 59 >gi|320450381|ref|YP_004202477.1| DNA-dependent DNA polymerase subunit beta [Thermus scotoductus SA-01] gi|320150550|gb|ADW21928.1| DNA-dependent DNA polymerase beta chain [Thermus scotoductus SA-01] Length = 575 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 5/71 (7%) Query: 542 ITTHRKRRKKAAYSPL--DEINGIGPLRKRLLLQSFG--TVKMISRS-SPETLASIEGIS 596 I HR+ ++ L E+ G+GP R L G +++ + + L ++G Sbjct: 78 IKKHRELAERVPKGVLAVMEVPGVGPKTARQLYDELGIDSLEKLREALDRGDLLRLKGFG 137 Query: 597 KKIACKIYNHF 607 +K A +I Sbjct: 138 QKKAERIREGL 148 >gi|154488672|ref|ZP_02029521.1| hypothetical protein BIFADO_01979 [Bifidobacterium adolescentis L2-32] gi|154082809|gb|EDN81854.1| hypothetical protein BIFADO_01979 [Bifidobacterium adolescentis L2-32] Length = 890 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 25/45 (55%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +GP R + +FGT+ I +S + L+ I+GI +IA + F Sbjct: 733 LGPPTARTIASAFGTLDAIEHASVDELSQIDGIGPEIAESVVTWF 777 >gi|119898292|ref|YP_933505.1| DNA ligase (NAD+) [Azoarcus sp. BH72] gi|166215393|sp|A1K713|DNLJ_AZOSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|119670705|emb|CAL94618.1| DNA ligase (NAD+) [Azoarcus sp. BH72] Length = 693 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 20/51 (39%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G + L + FG++ + + L + + +A I F + Sbjct: 526 GIRNVGEATAKDLARHFGSLDALLAADEGALQQVPDVGPVVAKCIAEFFAE 576 >gi|228991555|ref|ZP_04151500.1| hypothetical protein bpmyx0001_23050 [Bacillus pseudomycoides DSM 12442] gi|228768209|gb|EEM16827.1| hypothetical protein bpmyx0001_23050 [Bacillus pseudomycoides DSM 12442] Length = 124 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G++ +I +L+VGKA +++RIK + N I ++ I + +E Sbjct: 45 GIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSP--IQAHRDEVYRIDVCIVEDPMERE 102 Query: 71 LLEANMIKRLKPRFNI 86 + E +I L+ ++N+ Sbjct: 103 IYETYIINELQAKYNV 118 >gi|254422740|ref|ZP_05036458.1| DNA protecting protein DprA, putative [Synechococcus sp. PCC 7335] gi|196190229|gb|EDX85193.1| DNA protecting protein DprA, putative [Synechococcus sp. PCC 7335] Length = 411 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 26/45 (57%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 ++ +GP+ + L + FGT+++ +++ L ++GI A +I Sbjct: 13 QVKHVGPVTIKRLWEHFGTLELAWQATASELLKVDGIGLLSAERI 57 >gi|312796238|ref|YP_004029160.1| NAD-dependent DNA ligase [Burkholderia rhizoxinica HKI 454] gi|312168013|emb|CBW75016.1| NAD-dependent DNA ligase (EC 6.5.1.2) [Burkholderia rhizoxinica HKI 454] Length = 681 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 23/51 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G R L + FG++ + +S E L + + +A I + F + Sbjct: 524 GIRHVGEATARDLARHFGSLNALIDASEEALLEVNDVGPVVAEAIRHFFSE 574 >gi|251793989|ref|YP_003008721.1| NAD-dependent DNA ligase LigA [Aggregatibacter aphrophilus NJ8700] gi|247535388|gb|ACS98634.1| DNA ligase, NAD-dependent [Aggregatibacter aphrophilus NJ8700] Length = 671 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 6/66 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA ++ L I +G L F T++ + + E L + + + +A +I+ Sbjct: 504 KAKHTTLARFIFALGIRDVGEAIALNLANHFKTLEALQNADLEQLQQVPDVGEVVANRIF 563 Query: 605 NHFHKN 610 + + Sbjct: 564 VFWREE 569 >gi|315445158|ref|YP_004078037.1| DNA ligase, NAD-dependent [Mycobacterium sp. Spyr1] gi|315263461|gb|ADU00203.1| DNA ligase, NAD-dependent [Mycobacterium sp. Spyr1] Length = 701 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 25/49 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG+++ I +S E LA EG+ IA + + F Sbjct: 537 SIRHVGPTAARALATEFGSLEAIETASEEQLAGTEGVGPTIAAAVIDWF 585 >gi|45358958|ref|NP_988515.1| Hef nuclease [Methanococcus maripaludis S2] gi|45047824|emb|CAF30951.1| Helix-hairpin-helix motif:DEAD/DEAH box helicase:Helicase, C-terminal:Helix-hairpin-helix DNA-binding, class 1:ERCC4 domain [Methanococcus maripaludis S2] Length = 752 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%) Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 K R+K + + +GP+ LL +F +V+ I +S + L S++G+ A KI Sbjct: 689 KERQKFLV---EGLPDVGPVMAENLLDNFNSVENIFTASEKELTSVDGVGPITAKKIRE 744 >gi|145224827|ref|YP_001135505.1| NAD-dependent DNA ligase LigA [Mycobacterium gilvum PYR-GCK] gi|190359265|sp|A4TDZ8|DNLJ_MYCGI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|145217313|gb|ABP46717.1| DNA ligase, NAD-dependent [Mycobacterium gilvum PYR-GCK] Length = 712 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 25/49 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG+++ I +S E LA EG+ IA + + F Sbjct: 548 SIRHVGPTAARALATEFGSLEAIETASEEQLAGTEGVGPTIAAAVIDWF 596 >gi|293401241|ref|ZP_06645385.1| DNA ligase, NAD-dependent [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305367|gb|EFE46612.1| DNA ligase, NAD-dependent [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 662 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 6/64 (9%) Query: 552 AAYSPLDE------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 + +PL++ I +G ++L + F T++ + +S E L +I+ I A I Sbjct: 496 SKQNPLEDLVYGLGIRQVGKKAAKVLAKHFLTMEKLMAASEEELVAIKDIGDITAQSIVA 555 Query: 606 HFHK 609 F + Sbjct: 556 FFRE 559 >gi|332529208|ref|ZP_08405172.1| DNA ligase [Hylemonella gracilis ATCC 19624] gi|332041431|gb|EGI77793.1| DNA ligase [Hylemonella gracilis ATCC 19624] Length = 738 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 6/64 (9%) Query: 550 KKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 +K+ + L I +G + L + FG + I + E L + +A I Sbjct: 567 QKSKQTTLPRFLYGLGIRHVGESTAKDLARHFGQLDAIMDAGVEALMEAPDVGPVVAQSI 626 Query: 604 YNHF 607 F Sbjct: 627 RTFF 630 >gi|311069778|ref|YP_003974701.1| putative excinuclease [Bacillus atrophaeus 1942] gi|310870295|gb|ADP33770.1| putative excinuclease [Bacillus atrophaeus 1942] Length = 124 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G++ +I +L+VGKA L++RIK + N + ++ I + ++ Sbjct: 45 GIFMFYNINDELLFVGKARKLRQRIKKHFEDNVSPIKQHR--DEVYKIEVCLVEDPMDRE 102 Query: 71 LLEANMIKRLKPRFNI 86 + E MI L+ ++NI Sbjct: 103 IYETYMINTLQSKYNI 118 >gi|326792661|ref|YP_004310482.1| helicase, RecD/TraA family [Clostridium lentocellum DSM 5427] gi|326543425|gb|ADZ85284.1| helicase, RecD/TraA family [Clostridium lentocellum DSM 5427] Length = 749 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 9/54 (16%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPET---LASIEGISKKIACKIYNHFH 608 I GIG + +++ FG T ++I E LA + GIS+K A +I FH Sbjct: 87 IKGIGAKTAKKIVKHFGLDTFRIIE----EEPLVLAQVSGISEKKAQEIGEIFH 136 >gi|327539302|gb|EGF25923.1| DNA recombination-mediator protein A [Rhodopirellula baltica WH47] Length = 424 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 25/43 (58%) Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 G+GP L+++FG+ + I + +LAS+ G+ K+A I Sbjct: 68 PGLGPRTLTSLMEAFGSARAILNADKNSLASVHGVGPKLAHVI 110 >gi|308272453|emb|CBX29057.1| Transcription elongation protein nusA [uncultured Desulfobacterium sp.] Length = 432 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 57/145 (39%), Gaps = 19/145 (13%) Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 +D + +A+ V L I +I + + ME + ++ + R + Sbjct: 272 IDIIPWHVDSAKYVCNALAPAEIIRVI----IDEDNHAMEVIVPDESLSIAIGKRGQNVR 327 Query: 529 FIQRL-------RDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQS-FGTVKM 580 +L + E+H + K Y L + G+G L++ F +V Sbjct: 328 LASKLTGWNLDVQSESH-----YNEVL--KNGYDSLVSLPGVGINLVNSLIEKGFTSVDE 380 Query: 581 ISRSSPETLASIEGISKKIACKIYN 605 IS +S L I+GI+K+ A K+ N Sbjct: 381 ISNASASDLMQIKGIAKEKAEKLIN 405 >gi|32476472|ref|NP_869466.1| DNA processing chain A [Rhodopirellula baltica SH 1] gi|32447017|emb|CAD78923.1| DNA processing chain A [Rhodopirellula baltica SH 1] Length = 455 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 25/43 (58%) Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 G+GP L+++FG+ + I + +LAS+ G+ K+A I Sbjct: 99 PGLGPRTLTSLMEAFGSARAILNADKNSLASVHGVGPKLAHVI 141 >gi|262394922|ref|YP_003286776.1| DNA ligase [Vibrio sp. Ex25] gi|262338516|gb|ACY52311.1| DNA ligase [Vibrio sp. Ex25] Length = 690 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 21/52 (40%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L F T++ I ++ E L ++ I +A I F + + Sbjct: 541 VGEATAANLAMHFKTLEAIQNANEEQLIEVQDIGAVVAQHITTFFSEEQNQA 592 >gi|254229732|ref|ZP_04923141.1| DNA ligase, NAD-dependent [Vibrio sp. Ex25] gi|151937777|gb|EDN56626.1| DNA ligase, NAD-dependent [Vibrio sp. Ex25] Length = 407 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 21/52 (40%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L F T++ I ++ E L ++ I +A I F + + Sbjct: 258 VGEATAANLAMHFKTLEAIQNANEEQLIEVQDIGAVVAQHITTFFSEEQNQA 309 >gi|322368190|ref|ZP_08042759.1| NAD-dependent DNA ligase LigA [Haladaptatus paucihalophilus DX253] gi|320552206|gb|EFW93851.1| NAD-dependent DNA ligase LigA [Haladaptatus paucihalophilus DX253] Length = 685 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G R L ++F ++ + + + L ++ I K+A I F Sbjct: 530 GIPRVGTETARELARTFESMDDVMNADSDELEAVPDIGPKVAAGIREFF 578 >gi|255324552|ref|ZP_05365669.1| DNA ligase, NAD-dependent [Corynebacterium tuberculostearicum SK141] gi|255298458|gb|EET77758.1| DNA ligase, NAD-dependent [Corynebacterium tuberculostearicum SK141] Length = 689 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 25/86 (29%) Query: 547 KRRKK-----------AAYSPLDEING--------------IGPLRKRLLLQSFGTVKMI 581 KR KK + L+E+ G +GP+ R L +G++ + Sbjct: 497 KRSKKEGNVKVNTAGQNLLNNLEEVKGRDFWRVLVSLSIRHVGPIAARALASRYGSMDKL 556 Query: 582 SRSSPETLASIEGISKKIACKIYNHF 607 + E LA ++G+ IA ++ F Sbjct: 557 RAAKTEELAEVDGVGMTIAQSFHDWF 582 >gi|161527945|ref|YP_001581771.1| ERCC4 domain-containing protein [Nitrosopumilus maritimus SCM1] gi|160339246|gb|ABX12333.1| ERCC4 domain protein [Nitrosopumilus maritimus SCM1] Length = 228 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + S L + GIG +L+ FGT + ++ L+ +EG+ A KI Sbjct: 154 RQQLSSLCSLPGIGEKFAIRMLEKFGTPLKVFTATTAELSKVEGLGDARAKKIKKVL 210 >gi|88800009|ref|ZP_01115580.1| DNA ligase, NAD-dependent [Reinekea sp. MED297] gi|88777287|gb|EAR08491.1| DNA ligase, NAD-dependent [Reinekea sp. MED297] Length = 674 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 25/50 (50%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G R L FGT++ + ++ L +E + K+A + N+F + + Sbjct: 520 VGETTARNLAMHFGTIEKLMSATEAQLLDVEDVGPKVAAHVVNYFSEEQN 569 >gi|240102188|ref|YP_002958496.1| DNA repair and recombination protein RadA [Thermococcus gammatolerans EJ3] gi|239909741|gb|ACS32632.1| DNA repair and recombination protein RadA (radA) [Thermococcus gammatolerans EJ3] Length = 355 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 L+++ G+GP L ++ + +++ I+ +SP L I GIS+ A KI + + Sbjct: 43 LEDLPGVGPATAEKLREAGYDSIEAIAVASPLELKEIAGISEGAALKIIQAAREAAN 99 >gi|166216286|sp|A0KVI4|DNLJ_SHESA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 689 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 22/45 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G L FG+++ + ++ E L +E I + +A + + F Sbjct: 538 VGETTAANLATHFGSLEALRVATIEQLIQVEDIGEVVAQHVAHFF 582 >gi|117920017|ref|YP_869209.1| DNA ligase, NAD-dependent [Shewanella sp. ANA-3] gi|117612349|gb|ABK47803.1| DNA ligase, NAD-dependent [Shewanella sp. ANA-3] Length = 691 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 22/45 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G L FG+++ + ++ E L +E I + +A + + F Sbjct: 540 VGETTAANLATHFGSLEALRVATIEQLIQVEDIGEVVAQHVAHFF 584 >gi|14521089|ref|NP_126564.1| ski2-like helicase [Pyrococcus abyssi GE5] gi|18203529|sp|Q9V0A9|HELS_PYRAB RecName: Full=Putative ski2-type helicase gi|5458306|emb|CAB49795.1| DNA helicase [Pyrococcus abyssi GE5] Length = 715 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 PL E+ +G R R L + F ++ I + P L IEGI KI I+ + K Sbjct: 642 PLMELPMVGRKRARALYNAGFKDLESIRNAKPSELLRIEGIGAKIVEGIFKYLGKE 697 >gi|309777086|ref|ZP_07672052.1| DNA ligase, NAD-dependent [Erysipelotrichaceae bacterium 3_1_53] gi|308915156|gb|EFP60930.1| DNA ligase, NAD-dependent [Erysipelotrichaceae bacterium 3_1_53] Length = 665 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 6/64 (9%) Query: 552 AAYSPLDE------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 + +PL++ I +G ++L + F T+ + +S E L +I+ I + A I Sbjct: 495 SKKNPLEDLVYGLGIRQVGKKAAKVLAKQFLTMDALMAASVEELVAIKDIGQITAESITA 554 Query: 606 HFHK 609 FH+ Sbjct: 555 FFHE 558 >gi|14591093|ref|NP_143168.1| ski2-like helicase [Pyrococcus horikoshii OT3] gi|18202084|sp|O59025|HELS_PYRHO RecName: Full=Putative ski2-type helicase gi|3257700|dbj|BAA30383.1| 715aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 715 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 PL E+ IG R R L + F ++ I + P L +EGI KI I H Sbjct: 642 PLMELPMIGRKRARALYNAGFRDLESIKNARPAELLEVEGIGAKIVEAILKHL 694 >gi|254283004|ref|ZP_04957972.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR51-B] gi|219679207|gb|EED35556.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR51-B] Length = 675 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 22/50 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G R L FG++ I + E L ++ + +A I N F + + Sbjct: 522 VGESTARALAMHFGSLDAIEGAGQEVLEEVDDVGPVVATHIRNFFSEAAN 571 >gi|254508455|ref|ZP_05120575.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus 16] gi|219548665|gb|EED25670.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus 16] Length = 669 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 6/71 (8%) Query: 550 KKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 KA + L I +G L F T+ I +S E L ++ I +A I Sbjct: 502 AKAKQTTLARFLYSLGIREVGEATAANLALHFKTLDAIKAASHEQLIAVPDIGDIVASHI 561 Query: 604 YNHFHKNTSHT 614 F ++ + + Sbjct: 562 TAFFAQDNNQS 572 >gi|325295048|ref|YP_004281562.1| DNA ligase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065496|gb|ADY73503.1| DNA ligase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 723 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 23/54 (42%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G + L Q F + + +S LASI+GI A I N F + Sbjct: 549 GIRHVGEKTAQFLAQKFKDINELMNASFSELASIQGIGAITATSIRNFFKAKQN 602 >gi|189345858|ref|YP_001942387.1| DNA protecting protein DprA [Chlorobium limicola DSM 245] gi|189340005|gb|ACD89408.1| DNA protecting protein DprA [Chlorobium limicola DSM 245] Length = 392 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 24/51 (47%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L + G+GP R ++ FG + R+S + + GI + +A +I Sbjct: 17 LASVPGLGPARINAIITRFGYQPDLLRASADVFLEVPGIGRSLAEEISGFL 67 >gi|304384418|ref|ZP_07366824.1| NAD-dependent DNA ligase LigA [Prevotella marshii DSM 16973] gi|304334516|gb|EFM00803.1| NAD-dependent DNA ligase LigA [Prevotella marshii DSM 16973] Length = 680 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 23/47 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G RLL + F + + +SP+ L IEG+ IA + +F Sbjct: 530 VGETSARLLARRFKNIDALMEASPDELMQIEGVGMSIANSVVGYFRN 576 >gi|238917130|ref|YP_002930647.1| DNA ligase (NAD+) [Eubacterium eligens ATCC 27750] gi|238872490|gb|ACR72200.1| DNA ligase (NAD+) [Eubacterium eligens ATCC 27750] Length = 669 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 23/54 (42%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G + ++ + + ++ + E L +I I A I++ FH + Sbjct: 518 GIRNVGKNTAKQIMNYYDNLMELADAGEEELQNIPDIGATTAKCIHDFFHDEAN 571 >gi|15618073|ref|NP_224357.1| NAD-dependent DNA ligase LigA [Chlamydophila pneumoniae CWL029] gi|15835684|ref|NP_300208.1| NAD-dependent DNA ligase LigA [Chlamydophila pneumoniae J138] gi|16752895|ref|NP_445166.1| NAD-dependent DNA ligase LigA [Chlamydophila pneumoniae AR39] gi|33241485|ref|NP_876426.1| NAD-dependent DNA ligase LigA [Chlamydophila pneumoniae TW-183] gi|7674003|sp|Q9Z934|DNLJ_CHLPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|4376415|gb|AAD18302.1| DNA Ligase [Chlamydophila pneumoniae CWL029] gi|7189537|gb|AAF38439.1| DNA ligase [Chlamydophila pneumoniae AR39] gi|8978522|dbj|BAA98359.1| DNA ligase [Chlamydophila pneumoniae J138] gi|33235993|gb|AAP98083.1| DNA ligase (NAD+) [Chlamydophila pneumoniae TW-183] Length = 662 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 21/78 (26%) Query: 549 RKKAAYSPLDEIN-------------------GIGPLRKRLLLQSFGTVKMISRSSPETL 589 R+++A + L+ I GIG L F T+ + ++ E L Sbjct: 484 RERSARNILESIEQAKHVDLDRFLVALGIPLIGIGVATV--LAGHFETLDRVISATFEEL 541 Query: 590 ASIEGISKKIACKIYNHF 607 S+EGI +K+A I +F Sbjct: 542 LSLEGIGEKVAHAIAEYF 559 >gi|327439035|dbj|BAK15400.1| uncharacterized conserved protein [Solibacillus silvestris StLB046] Length = 390 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMIS-RSSPETLASIEGISKKIACKI 603 PLD I GIG +L +FGT I +S E L S+ I +K+A I Sbjct: 320 PLDFIPGIGAKTIEKMLDAFGTEMNILHEASFEELKSV--IPEKLAVLI 366 >gi|307261779|ref|ZP_07543445.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868597|gb|EFN00408.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 676 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 21/47 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G + L F + I ++ E L ++ + + +A +I + + Sbjct: 526 VGEATAQNLANHFHNLDAIRAATFEQLQEVQDVGEVVANRIVRFWQE 572 >gi|307257368|ref|ZP_07539138.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864218|gb|EFM96131.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 682 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 21/47 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G + L F + I ++ E L ++ + + +A +I + + Sbjct: 532 VGEATAQNLANHFHNLDAIRAATFEQLQEVQDVGEVVANRIVRFWQE 578 >gi|307250556|ref|ZP_07532498.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857372|gb|EFM89486.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 682 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 21/47 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G + L F + I ++ E L ++ + + +A +I + + Sbjct: 532 VGEATAQNLANHFHNLDAIRAATFEQLQEVQDVGEVVANRIVRFWQE 578 >gi|307248328|ref|ZP_07530352.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306855149|gb|EFM87328.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 682 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 21/47 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G + L F + I ++ E L ++ + + +A +I + + Sbjct: 532 VGEATAQNLANHFHNLDAIRAATFEQLQEVQDVGEVVANRIVRFWQE 578 >gi|307246220|ref|ZP_07528301.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255203|ref|ZP_07537019.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259638|ref|ZP_07541362.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852829|gb|EFM85053.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861831|gb|EFM93809.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866283|gb|EFM98147.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 682 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 21/47 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G + L F + I ++ E L ++ + + +A +I + + Sbjct: 532 VGEATAQNLANHFHNLDAIRAATFEQLQEVQDVGEVVANRIVRFWQE 578 >gi|303250616|ref|ZP_07336813.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252937|ref|ZP_07534825.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650604|gb|EFL80763.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859575|gb|EFM91600.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 682 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 21/47 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G + L F + I ++ E L ++ + + +A +I + + Sbjct: 532 VGEATAQNLANHFHNLDAIRAATFEQLQEVQDVGEVVANRIVRFWQE 578 >gi|303252068|ref|ZP_07338237.1| truncated NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649050|gb|EFL79237.1| truncated NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 253 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 21/47 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G + L F + I ++ E L ++ + + +A +I + + Sbjct: 103 VGEATAQNLANHFHNLDAIRAATFEQLQEVQDVGEVVANRIVRFWQE 149 >gi|254173225|ref|ZP_04879898.1| DNA repair and recombination protein RadA [Thermococcus sp. AM4] gi|214032634|gb|EEB73463.1| DNA repair and recombination protein RadA [Thermococcus sp. AM4] Length = 352 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 L+++ G+GP L ++ + +++ I+ +SP L I GIS+ A KI + + Sbjct: 40 LEDLPGVGPATAEKLREAGYDSIEAIAVASPLELKEIAGISEGAALKIIQAAREAAN 96 >gi|190150622|ref|YP_001969147.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263969|ref|ZP_07545570.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|254781246|sp|B3H275|DNLJ_ACTP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|189915753|gb|ACE62005.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870658|gb|EFN02401.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 682 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 21/47 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G + L F + I ++ E L ++ + + +A +I + + Sbjct: 532 VGEATAQNLANHFHNLDAIRAATFEQLQEVQDVGEVVANRIVRFWQE 578 >gi|165976722|ref|YP_001652315.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190359223|sp|B0BQN6|DNLJ_ACTPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|165876823|gb|ABY69871.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 682 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 21/47 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G + L F + I ++ E L ++ + + +A +I + + Sbjct: 532 VGEATAQNLANHFHNLDAIRAATFEQLQEVQDVGEVVANRIVRFWQE 578 >gi|18312257|ref|NP_558924.1| ATP-dependent, DNA binding helicase [Pyrobaculum aerophilum str. IM2] gi|18159700|gb|AAL63106.1| ATP-dependent, DNA binding helicase [Pyrobaculum aerophilum str. IM2] Length = 704 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Query: 562 GIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605 G+G +R R+L F T++ I+R+S +AS+ G +K+A I Sbjct: 652 GVGRVRARILYNFGFRTLRDIARASVREIASLPGFGEKLAESIIE 696 >gi|166216287|sp|Q0HK31|DNLJ_SHESM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 688 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 22/45 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G L FG+++ + ++ E L +E I + +A + + F Sbjct: 538 VGEATASNLATHFGSLEALRVATIEQLIQVEDIGEVVAQHVAHFF 582 >gi|52425821|ref|YP_088958.1| NAD-dependent DNA ligase LigA [Mannheimia succiniciproducens MBEL55E] gi|81386743|sp|Q65RN7|DNLJ_MANSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|52307873|gb|AAU38373.1| Lig protein [Mannheimia succiniciproducens MBEL55E] Length = 675 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 19/87 (21%) Query: 542 ITTHRKRR--KKAAYSPLDEIN--------------GI---GPLRKRLLLQSFGTVKMIS 582 IT R R +K+A + LD + GI G L F + + Sbjct: 483 ITLMRLERMGEKSAQNALDSLEKAKNTTLARFIFALGIREVGEATALNLANHFKNLDALQ 542 Query: 583 RSSPETLASIEGISKKIACKIYNHFHK 609 +SPE L + + + +A +IY + + Sbjct: 543 AASPEQLQEVADVGEVVANRIYVFWRE 569 >gi|113969850|ref|YP_733643.1| DNA ligase, NAD-dependent [Shewanella sp. MR-4] gi|113884534|gb|ABI38586.1| DNA ligase, NAD-dependent [Shewanella sp. MR-4] Length = 690 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 22/45 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G L FG+++ + ++ E L +E I + +A + + F Sbjct: 540 VGEATASNLATHFGSLEALRVATIEQLIQVEDIGEVVAQHVAHFF 584 >gi|302336117|ref|YP_003801324.1| DNA ligase, NAD-dependent [Olsenella uli DSM 7084] gi|301319957|gb|ADK68444.1| DNA ligase, NAD-dependent [Olsenella uli DSM 7084] Length = 747 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G LL FG+++ ++ ++ E +A ++GI KIA + F Sbjct: 587 GIRHVGASVANLLADRFGSMQALAAATEEDMAQVDGIGPKIAQSVRGFF 635 >gi|150402564|ref|YP_001329858.1| Hef nuclease [Methanococcus maripaludis C7] gi|150033594|gb|ABR65707.1| ERCC4 domain protein [Methanococcus maripaludis C7] Length = 749 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%) Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 K R+K + + +GP+ LL +F +V+ I +S L ++EG+ A KI Sbjct: 686 KERQKFLV---EGLPDVGPVMAENLLDNFNSVEDIFTASEAELKAVEGVGPITAKKIRE 741 >gi|296171259|ref|ZP_06852663.1| DNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894227|gb|EFG73984.1| DNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 693 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 25/49 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG++ I +S E LA++EG+ IA + F Sbjct: 533 SIRHVGPTAARALATEFGSLDAIMAASTERLAAVEGVGPTIAAALTEWF 581 >gi|325846528|ref|ZP_08169443.1| DNA ligase (NAD+) [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481286|gb|EGC84327.1| DNA ligase (NAD+) [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 668 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 23/50 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I +G R L + + +++ + + + L +E I +K + I F+ Sbjct: 512 GIPNVGVKTARDLAEKYKSLENLRNAKEDDLVEVEDIGEKTSHDIVEFFN 561 >gi|296123087|ref|YP_003630865.1| DNA ligase, NAD-dependent [Planctomyces limnophilus DSM 3776] gi|296015427|gb|ADG68666.1| DNA ligase, NAD-dependent [Planctomyces limnophilus DSM 3776] Length = 707 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 27/50 (54%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I +G ++L + FG++ +S + E L++ + + IA +++ FH Sbjct: 550 NIRHVGQRTAQILAERFGSMDRLSAQTIEELSATPEVGEVIAQSVHHFFH 599 >gi|90579891|ref|ZP_01235699.1| DNA ligase [Vibrio angustum S14] gi|90438776|gb|EAS63959.1| DNA ligase [Vibrio angustum S14] Length = 670 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 23/48 (47%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +G L F T++ IS+++ E L + + +A I+N F + Sbjct: 521 VGEATAANLANYFETLESISQATKEQLIEVPDVGDIVAAHIFNFFREE 568 >gi|289581647|ref|YP_003480113.1| helicase [Natrialba magadii ATCC 43099] gi|289531200|gb|ADD05551.1| helicase domain protein [Natrialba magadii ATCC 43099] Length = 829 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 26/44 (59%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 I IGP+ R LL+ FGTV+ + ++ + L + +G+ + A + Sbjct: 773 SIAEIGPVTARSLLEEFGTVEAVMIATEDELQAADGVGQVTAER 816 >gi|205372454|ref|ZP_03225267.1| NAD-dependent DNA ligase LigA [Bacillus coahuilensis m4-4] Length = 635 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 17/120 (14%) Query: 493 TIIS-IAKGPKRSAGMEKFFVKKGEALVLNM--RDPILYFIQRLRDEAHRFAITTHRKRR 549 +IS + K + +F+ + + + L L IQ AI R Sbjct: 452 KVISQLFKEELIQDVADIYFLTQEQLIALERIGEKSALNLIQ---------AID---ASR 499 Query: 550 KKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + + L I +G + L Q F T+ + +S E L I+ I K+A I +F Sbjct: 500 ENSLEKLLFGLGIRHVGAKAAKTLAQEFDTLTNLQNASKEELIRIDEIGDKMADSIVQYF 559 >gi|288869689|ref|ZP_05975717.2| putative Ski2-type helicase [Methanobrevibacter smithii DSM 2374] gi|288861084|gb|EFC93382.1| putative Ski2-type helicase [Methanobrevibacter smithii DSM 2374] Length = 693 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 +G R RLL+++FG +S +S + L +EGI K+A K+ Sbjct: 648 LGRKRARLLMKTFG--DNLSEASEKELQKVEGIGPKLAGKVK 687 >gi|212696137|ref|ZP_03304265.1| hypothetical protein ANHYDRO_00673 [Anaerococcus hydrogenalis DSM 7454] gi|212676766|gb|EEB36373.1| hypothetical protein ANHYDRO_00673 [Anaerococcus hydrogenalis DSM 7454] Length = 668 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 23/50 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I +G R L + + +++ + + + L +E I +K + I F+ Sbjct: 512 GIPNVGVKTARDLAEKYKSLENLRNAKEDDLVEVEDIGEKTSHDIVEFFN 561 >gi|239827612|ref|YP_002950236.1| hypothetical protein GWCH70_2262 [Geobacillus sp. WCH70] gi|239807905|gb|ACS24970.1| conserved hypothetical protein [Geobacillus sp. WCH70] Length = 387 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%) Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKI 603 PL+ I G+GP LL FGT + ++ +++ E L I +K+A I Sbjct: 317 PLEFIPGLGPKTYEKLLARFGTEMYVLHQATEEELKQ--SIGEKLAKLI 363 >gi|56479083|ref|YP_160672.1| NAD-dependent DNA ligase [Aromatoleum aromaticum EbN1] gi|81356392|sp|Q5NYU3|DNLJ_AZOSE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|56315126|emb|CAI09771.1| NAD-dependent DNA ligase [Aromatoleum aromaticum EbN1] Length = 681 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 21/51 (41%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G R L + FG++ + + E L + + +A I F + Sbjct: 526 GIRNVGEATARELARHFGSLDALMDADIERLQQVADVGPIVAHSIAGFFAE 576 >gi|309799923|ref|ZP_07694127.1| UvrABC system protein C [Streptococcus infantis SK1302] gi|308116450|gb|EFO53922.1| UvrABC system protein C [Streptococcus infantis SK1302] Length = 55 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 ++ F ++ I +S + + + GI + +A ++ H + Sbjct: 1 MKYFKSLTKIKEASVDEIVGV-GIPRAVAEAVHQHLN 36 >gi|332982901|ref|YP_004464342.1| RecD/TraA family ATP-dependent DNA helicase [Mahella australiensis 50-1 BON] gi|332700579|gb|AEE97520.1| ATP-dependent DNA helicase, RecD/TraA family [Mahella australiensis 50-1 BON] Length = 741 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 3/54 (5%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I GIGP + L+Q FG T+ + + P+ L IEGI K A KI F K Sbjct: 88 IAGIGPSTAKKLVQHFGEKTLD-VMQCDPDRLTEIEGIGKSKAEKIAASFAKQA 140 >gi|238752012|ref|ZP_04613496.1| DNA ligase [Yersinia rohdei ATCC 43380] gi|238709712|gb|EEQ01946.1| DNA ligase [Yersinia rohdei ATCC 43380] Length = 670 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 20/48 (41%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +G L F T+ + + + L S+ + + +A + N ++ Sbjct: 520 VGEATAANLAAHFRTLANLRAADIDALKSVPDVGEVVAKHVLNFLNEE 567 >gi|212224798|ref|YP_002308034.1| DNA repair and recombination protein RadA [Thermococcus onnurineus NA1] gi|212009755|gb|ACJ17137.1| radA DNA repair protein rad51 [Thermococcus onnurineus NA1] Length = 353 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 L+++ G+GP L ++ + +++ I+ +SP L I GIS+ A KI + + Sbjct: 41 LEDLPGVGPATAEKLREAGYDSIEAIAVASPMELKEIAGISEGAALKIIQAAREAAN 97 >gi|20807100|ref|NP_622271.1| NAD-dependent DNA ligase [Thermoanaerobacter tengcongensis MB4] gi|81482513|sp|Q8RC42|DNLJ_THETN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|20515592|gb|AAM23875.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Thermoanaerobacter tengcongensis MB4] Length = 666 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 548 RRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 + KK L IN IG +++ + F ++ I ++ E + I K+A I Sbjct: 496 KSKKRDLDRLLFGLGINLIGSKAAQVIAEHFKSMDNIMKAKYEDFLELPDIGPKMARSIV 555 Query: 605 NHFHKNTS 612 F + + Sbjct: 556 TFFSEEQN 563 >gi|227543584|ref|ZP_03973633.1| DNA ligase, NAD-dependent [Lactobacillus reuteri CF48-3A] gi|300909387|ref|ZP_07126848.1| NAD-dependent DNA ligase LigA [Lactobacillus reuteri SD2112] gi|227186424|gb|EEI66495.1| DNA ligase, NAD-dependent [Lactobacillus reuteri CF48-3A] gi|300893252|gb|EFK86611.1| NAD-dependent DNA ligase LigA [Lactobacillus reuteri SD2112] Length = 680 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G R++++ FG + + +++ + +++I GI I I +F Sbjct: 523 GIRHVGAKAARIIMEHFGDLDSLMKANDDEISAISGIGPTIGESIVTYF 571 >gi|118430925|ref|NP_147034.2| holliday junction migration helicase [Aeropyrum pernix K1] gi|150421571|sp|Q9YFQ8|HELS_AERPE RecName: Full=Putative ski2-type helicase gi|116062250|dbj|BAA79103.2| holliday junction migration helicase [Aeropyrum pernix K1] Length = 735 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L EI G+G +R R+L ++ + +++ ++ + E L + I A +I Sbjct: 648 QLVEIPGVGRVRARILFEAGYRSIEDLATARAEDLMRLPLIGPSTARQILEFL 700 >gi|227432449|ref|ZP_03914436.1| NAD-dependent DNA ligase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351770|gb|EEJ42009.1| NAD-dependent DNA ligase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 680 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 25/45 (55%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G RL+ + F T+ +S +S E +A+I GI IA I +F Sbjct: 526 VGAKAARLIAEKFRTLSAVSEASVEDIANINGIGHTIAQSIVQYF 570 >gi|91793866|ref|YP_563517.1| DNA ligase, NAD-dependent [Shewanella denitrificans OS217] gi|123165936|sp|Q12L82|DNLJ_SHEDO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|91715868|gb|ABE55794.1| DNA ligase, NAD-dependent [Shewanella denitrificans OS217] Length = 670 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 18/45 (40%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G L F ++ + + E L + + + +A I + F Sbjct: 519 VGEATAANLANHFKSLAAVREAGVEQLLEVADVGEIVAKHIRHFF 563 >gi|116617684|ref|YP_818055.1| NAD-dependent DNA ligase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122272115|sp|Q03YP0|DNLJ_LEUMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116096531|gb|ABJ61682.1| NAD-dependent DNA ligase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 680 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 25/45 (55%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G RL+ + F T+ +S +S E +A+I GI IA I +F Sbjct: 526 VGAKAARLIAEKFRTLSAVSEASVEDIANINGIGHTIAQSIVQYF 570 >gi|311067136|ref|YP_003972059.1| NAD-dependent DNA ligase LigA [Bacillus atrophaeus 1942] gi|310867653|gb|ADP31128.1| NAD-dependent DNA ligase LigA [Bacillus atrophaeus 1942] Length = 668 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 6/66 (9%) Query: 550 KKAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 +K+ + L+ I IG + L F ++ + +++ E L +I+ I +K+A + Sbjct: 496 QKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLDHLKKANKEELLAIDEIGEKMADAV 555 Query: 604 YNHFHK 609 +F K Sbjct: 556 ITYFQK 561 >gi|299820617|ref|ZP_07052507.1| NAD-dependent DNA ligase LigA [Listeria grayi DSM 20601] gi|299818112|gb|EFI85346.1| NAD-dependent DNA ligase LigA [Listeria grayi DSM 20601] Length = 674 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 6/70 (8%) Query: 551 KAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L+ I +G R L F T+ + +S E L +I I + +A I Sbjct: 497 KSKQNSLERLLFGLGIRHVGAKAARSLAIHFETMDNVKEASLEDLIAINDIGEIMADSIV 556 Query: 605 NHFHKNTSHT 614 +F H+ Sbjct: 557 TYFENEEVHS 566 >gi|229085464|ref|ZP_04217705.1| hypothetical protein bcere0022_20780 [Bacillus cereus Rock3-44] gi|228697940|gb|EEL50684.1| hypothetical protein bcere0022_20780 [Bacillus cereus Rock3-44] Length = 124 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G++ +I +L+VGKA +++RIK + N + ++ I + +E Sbjct: 45 GIFMFYNINDELLFVGKARKVRQRIKKHFEDNVSPIKNHR--DEVYRIDVCIVEDPMERE 102 Query: 71 LLEANMIKRLKPRFNI 86 + E +I + ++N+ Sbjct: 103 IYETYVINEFQAKYNV 118 >gi|91203661|emb|CAJ71314.1| strongly similar to competence protein DprA [Candidatus Kuenenia stuttgartiensis] Length = 367 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 22/45 (48%) Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 GIG + L++ FG++ + ++ L + GI KIA I Sbjct: 14 KGIGARTYQTLVERFGSIAGVFQAVKPELEKLPGIGGKIANAILE 58 >gi|322420083|ref|YP_004199306.1| DNA protecting protein DprA [Geobacter sp. M18] gi|320126470|gb|ADW14030.1| DNA protecting protein DprA [Geobacter sp. M18] Length = 359 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 24/51 (47%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 L + +G + LL FG+ + ++S L S++G+S A I H Sbjct: 8 ALKSVPQVGNVTFLRLLAHFGSPERALKASLRELGSVKGVSAAAARAIVQH 58 >gi|18977049|ref|NP_578406.1| ski2-like helicase [Pyrococcus furiosus DSM 3638] gi|18202135|sp|O73946|HELS_PYRFU RecName: Full=Putative ski2-type helicase gi|223365750|pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1 gi|223365751|pdb|2ZJ5|A Chain A, Archaeal Dna Helicase Hjm Complexed With Adp In Form 1 gi|223365752|pdb|2ZJ8|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 2 gi|223365753|pdb|2ZJA|A Chain A, Archaeal Dna Helicase Hjm Complexed With Amppcp In Form 2 gi|3374506|dbj|BAA32016.1| helicase [Pyrococcus furiosus] gi|18892686|gb|AAL80801.1| helicase [Pyrococcus furiosus DSM 3638] Length = 720 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 PL ++ +G R R L S F +++ IS++ PE L IEGI K I+ KN Sbjct: 647 PLMQLPLVGRRRARALYNSGFRSIEDISQARPEELLKIEGIGVKTVEAIFKFLGKN 702 >gi|313903518|ref|ZP_07836909.1| DNA ligase, NAD-dependent [Thermaerobacter subterraneus DSM 13965] gi|313466339|gb|EFR61862.1| DNA ligase, NAD-dependent [Thermaerobacter subterraneus DSM 13965] Length = 817 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Query: 563 IGPLRKRLLL-QSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +G R LL + FGT++ + + P+ L ++ I +IA + F Sbjct: 573 VGE-RVAGLLARHFGTIQRLMAAGPDELMAVPEIGPRIAESVVIFFRDE 620 >gi|14520459|ref|NP_125934.1| DNA repair and recombination protein RadA [Pyrococcus abyssi GE5] gi|13878699|sp|Q9V233|RADA_PYRAB RecName: Full=DNA repair and recombination protein radA gi|5457674|emb|CAB49165.1| radA DNA repair protein rad51 : DNA repair and recombination protein radA [Pyrococcus abyssi GE5] Length = 356 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 558 DEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +++ G+GP L ++ F T++ I+ +SP L + GIS+ A KI K + Sbjct: 45 EDLPGVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAAN 100 >gi|327289261|ref|XP_003229343.1| PREDICTED: DNA excision repair protein ERCC-1-like [Anolis carolinensis] Length = 332 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 23/39 (58%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 LL +F ++ + ++S E L+ GI + A ++++ H+ Sbjct: 275 LLSNFKSLANLVQASKEDLSLCPGIGPQKAKRLFDALHE 313 >gi|315223456|ref|ZP_07865313.1| NAD-dependent DNA ligase LigA [Capnocytophaga ochracea F0287] gi|314946629|gb|EFS98620.1| NAD-dependent DNA ligase LigA [Capnocytophaga ochracea F0287] Length = 662 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 23/45 (51%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + L + + T++ + ++ E L ++ I +IA I N F Sbjct: 512 VGETVAKKLARHYKTIEALENATVEQLVEVDEIGNQIASSIVNFF 556 >gi|311104688|ref|YP_003977541.1| DNA ligase, NAD-dependent [Achromobacter xylosoxidans A8] gi|310759377|gb|ADP14826.1| DNA ligase, NAD-dependent [Achromobacter xylosoxidans A8] Length = 702 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G R + + FG++ I + + L+S+ + +A I F + Sbjct: 548 GIRHVGETTARDVARHFGSIDAIMDADEDALSSVPDVGPVVAASIRRFFAE 598 >gi|291513768|emb|CBK62978.1| DNA ligase, NAD-dependent [Alistipes shahii WAL 8301] Length = 674 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + L + F ++ + R++ E L + + +IA I +F + + Sbjct: 513 VGETTAKYLAEHFRSLDAVMRATREELVEADEVGGRIADAIIEYFAEEDN 562 >gi|159028322|emb|CAO87220.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 669 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 30/46 (65%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 +G + ++L +SF TV+ ++ +S LAS+ GI ++IA +Y+ F Sbjct: 520 VGSVNAKILAESFRTVEELANASVTDLASVYGIGEEIAQSVYDWFR 565 >gi|315606212|ref|ZP_07881239.1| DNA ligase [Actinomyces sp. oral taxon 180 str. F0310] gi|315312100|gb|EFU60190.1| DNA ligase [Actinomyces sp. oral taxon 180 str. F0310] Length = 777 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 27/49 (55%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L +F ++ + +S E L+++EG+ ++I + + F Sbjct: 618 SIRHVGPTAARALADAFRSMDALRAASLEELSAVEGVGEEIGRSLRDWF 666 >gi|134300185|ref|YP_001113681.1| NAD-dependent DNA ligase [Desulfotomaculum reducens MI-1] gi|190359251|sp|A4J703|DNLJ_DESRM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|134052885|gb|ABO50856.1| DNA ligase, NAD-dependent [Desulfotomaculum reducens MI-1] Length = 670 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 28/55 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G ++L + FG+++ + +++ E L I I +IA I +F + + Sbjct: 515 GIRHVGERAAKILARQFGSMQALMQATAEDLTGISEIGPRIAESIMEYFSRQENQ 569 >gi|301777726|ref|XP_002924284.1| PREDICTED: DNA excision repair protein ERCC-1-like [Ailuropoda melanoleuca] Length = 306 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 25/41 (60%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + LL +FG+++ + +S E LA G+ + A ++++ H+ Sbjct: 259 QTLLTTFGSLEQLMAASREDLALCPGLGPQKARRLFDVLHE 299 >gi|78043193|ref|YP_359946.1| DNA ligase, NAD-dependent [Carboxydothermus hydrogenoformans Z-2901] gi|123743192|sp|Q3AD38|DNLJ_CARHZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|77995308|gb|ABB14207.1| DNA ligase, NAD-dependent [Carboxydothermus hydrogenoformans Z-2901] Length = 664 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 6/68 (8%) Query: 551 KAAYSPLDE-ING-----IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L+ I G +G R L F + + + E + +I + K+A I Sbjct: 499 KSKQNSLERLIYGLGIRLVGEKAARDLAVHFKELDKLIAAGEEEIMAIPSVGPKMAASIK 558 Query: 605 NHFHKNTS 612 F + + Sbjct: 559 AFFAQKEN 566 >gi|73948160|ref|XP_855116.1| PREDICTED: similar to DNA excision repair protein ERCC-1 [Canis familiaris] Length = 294 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 25/41 (60%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + LL +FG+++ + +S E LA G+ + A ++++ H+ Sbjct: 247 QTLLTTFGSLEQLMAASREDLALCPGLGPQKARRLFDVLHE 287 >gi|323499974|ref|ZP_08104932.1| NAD-dependent DNA ligase LigA [Vibrio sinaloensis DSM 21326] gi|323314991|gb|EGA68044.1| NAD-dependent DNA ligase LigA [Vibrio sinaloensis DSM 21326] Length = 669 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 26/52 (50%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L Q F +++ +++++ E L ++ I + +A I F + ++ Sbjct: 521 VGEATAANLAQHFKSLQAVTKATHEELIAVSDIGEIVASHITAFFAQESNQQ 572 >gi|270307935|ref|YP_003329993.1| DNA repair protein RadC [Dehalococcoides sp. VS] gi|270153827|gb|ACZ61665.1| DNA repair protein RadC [Dehalococcoides sp. VS] Length = 228 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 21/39 (53%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + LL FG I+ +S E L+ ++GI AC++ F Sbjct: 52 QRLLAHFGGPSGIASASVEELSKLKGIGLAKACQLKAAF 90 >gi|88810628|ref|ZP_01125885.1| DNA ligase, NAD-dependent [Nitrococcus mobilis Nb-231] gi|88792258|gb|EAR23368.1| DNA ligase, NAD-dependent [Nitrococcus mobilis Nb-231] Length = 672 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 24/49 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G + + L + +G + + R++ E L + I +A +I + F Sbjct: 519 GIPEVGEVTAKRLAEHYGDLDPLERATEEALTRLPDIGPVLAQRITHFF 567 >gi|255994735|ref|ZP_05427870.1| helicase, RecD/TraA family [Eubacterium saphenum ATCC 49989] gi|255993448|gb|EEU03537.1| helicase, RecD/TraA family [Eubacterium saphenum ATCC 49989] Length = 741 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 5/57 (8%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHF--HKNTS 612 I G+G R +++++FG T+ +I + L + GISKK+A +I++++ HK Sbjct: 95 IKGVGEKRADIIIEAFGEKTLDIIEN-DYKKLEKLGGISKKLAKEIHDYYIEHKEEG 150 >gi|315231638|ref|YP_004072074.1| DNA repair and recombination RadA-like protein [Thermococcus barophilus MP] gi|315184666|gb|ADT84851.1| DNA repair and recombination RadA-like protein [Thermococcus barophilus MP] Length = 355 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 L+++ G+GP L ++ + +++ I+ +SP L I GIS+ A KI + + Sbjct: 43 LEDLPGVGPATAEKLREAGYDSLEAIAVASPIELKEIAGISEGAALKIIQAAREAAN 99 >gi|189485676|ref|YP_001956617.1| DprA-like DNA processing protein [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287635|dbj|BAG14156.1| DprA-like DNA processing protein [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 364 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 18/43 (41%), Positives = 26/43 (60%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 IG +R LL FG ++I ++S L S+EGI + IA I+N Sbjct: 17 IGAIRFFRLLDKFGDTELILKASKRDLMSVEGIGQAIADTIFN 59 >gi|269103205|ref|ZP_06155902.1| DNA ligase [Photobacterium damselae subsp. damselae CIP 102761] gi|268163103|gb|EEZ41599.1| DNA ligase [Photobacterium damselae subsp. damselae CIP 102761] Length = 495 Score = 52.4 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 22/48 (45%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +G L F T++ + +S + L + + + +A I+N F + Sbjct: 345 VGEATAANLAHYFETLEALMTASKDQLIEVPDVGEIVAAHIFNFFREE 392 >gi|299536161|ref|ZP_07049475.1| hypothetical protein BFZC1_09080 [Lysinibacillus fusiformis ZC1] gi|298728436|gb|EFI68997.1| hypothetical protein BFZC1_09080 [Lysinibacillus fusiformis ZC1] Length = 123 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 2/76 (2%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G++ + +L+VGKA +++RIK + N + ++ I +E Sbjct: 45 GIFLFYNDKNELLFVGKARKIRQRIKKHFEDNVSPMKNHR--DEVFKIEVYEVEDPMERE 102 Query: 71 LLEANMIKRLKPRFNI 86 + E I + ++N+ Sbjct: 103 IYETYAINTFRSKYNV 118 >gi|311694426|gb|ADP97299.1| NAD-dependent DNA ligase [marine bacterium HP15] Length = 678 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616 +G + L FGT++ I+ + E+L ++ + +A I + F + T + T Sbjct: 524 VGEATAKALAGHFGTLEAIAAADEESLQTVPDVGPIVAGHIRSFF-EQTHNRET 576 >gi|310657889|ref|YP_003935610.1| DNA ligase [Clostridium sticklandii DSM 519] gi|308824667|emb|CBH20705.1| DNA ligase, NAD(+)-dependent [Clostridium sticklandii] Length = 683 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 IG + L + ++ I ++S E L I+ I +K+A I+ F + Sbjct: 518 IGTKAAKTLASVYSDIEQIKQASIEELLQIDEIGEKMAQSIFEFFKVEEN 567 >gi|322513636|ref|ZP_08066733.1| NAD-dependent DNA ligase LigA [Actinobacillus ureae ATCC 25976] gi|322120561|gb|EFX92462.1| NAD-dependent DNA ligase LigA [Actinobacillus ureae ATCC 25976] Length = 681 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 17/77 (22%) Query: 550 KKAAYSPLDEIN--------------GI---GPLRKRLLLQSFGTVKMISRSSPETLASI 592 KK+A + L+ I GI G + L F ++ I ++ E L + Sbjct: 502 KKSAQNALNSIEKAKNTTLARFLFALGIRDVGEATAQNLANHFHNLEAIRMATFEQLQEV 561 Query: 593 EGISKKIACKIYNHFHK 609 + + + +A +I + + Sbjct: 562 QDVGEVVANRIVRFWQE 578 >gi|309812136|ref|ZP_07705894.1| DNA ligase (NAD+) [Dermacoccus sp. Ellin185] gi|308433823|gb|EFP57697.1| DNA ligase (NAD+) [Dermacoccus sp. Ellin185] Length = 770 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF----HKN 610 I +GP R L FG++ I + TLA+ +G+ IA I F H+N Sbjct: 553 SIRHVGPTAARALATQFGSIDAIRDADEATLAATDGVGAVIAHSIKEWFAVDWHEN 608 >gi|15897631|ref|NP_342236.1| RNA helicase (ATP dependent)/eIF4A (eiF4A) [Sulfolobus solfataricus P2] gi|284174956|ref|ZP_06388925.1| RNA helicase (ATP dependent)/eIF4A (eiF4A) [Sulfolobus solfataricus 98/2] gi|6015747|emb|CAB57574.1| ATP-dependent RNA helicase, eIF-4A family [Sulfolobus solfataricus P2] gi|13813898|gb|AAK41026.1| RNA helicase (ATP dependent)/eIF4A (eiF4A) [Sulfolobus solfataricus P2] gi|261602399|gb|ACX92002.1| ERCC4 domain protein [Sulfolobus solfataricus 98/2] Length = 233 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 + +G + LL FGT++ I +S L G S+K A IY + S T Sbjct: 162 ESFPNVGSILAERLLLKFGTIQNICNASISELEKALG-SRKKAEDIYKILRTHYSKT 217 >gi|89896634|ref|YP_520121.1| hypothetical protein DSY3888 [Desulfitobacterium hafniense Y51] gi|122997178|sp|Q24QL5|DNLJ_DESHY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|89336082|dbj|BAE85677.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 659 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 27/55 (49%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G ++L Q +GT++ + ++ E L I + +A + F + ++H Sbjct: 509 GIRHVGEKAGKILAQKYGTMEDLEKAQVEELQEIPDVGPAMAQSVAQFFQQESTH 563 >gi|296109929|ref|YP_003616878.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus infernus ME] gi|295434743|gb|ADG13914.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus infernus ME] Length = 770 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%) Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + + +G LL+ F TV+ + +S L +EG+ ++ A KI Sbjct: 715 ESLPDVGGALAERLLEHFKTVENVFTASERELMRVEGVGEERAKKIREVL 764 >gi|238919178|ref|YP_002932692.1| NAD-dependent DNA ligase LigA [Edwardsiella ictaluri 93-146] gi|238868746|gb|ACR68457.1| DNA ligase, NAD-dependent, putative [Edwardsiella ictaluri 93-146] Length = 672 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 21/48 (43%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +G L FG+++ + + E+L + + + +A I + + Sbjct: 518 VGEATAANLASHFGSLQALRAADLESLKRVPEVGEVVASHIVHFLSEE 565 >gi|294631529|ref|ZP_06710089.1| DNA ligase, NAD-dependent [Streptomyces sp. e14] gi|292834862|gb|EFF93211.1| DNA ligase, NAD-dependent [Streptomyces sp. e14] Length = 732 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 27/52 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +GP+ L + F ++ I ++S E LA+ EG+ + IA + F + Sbjct: 552 SIRHVGPVAAEALAREFRSIDRIEQASEEELANTEGVGQIIAASLKEWFAEE 603 >gi|256820386|ref|YP_003141665.1| DNA ligase, NAD-dependent [Capnocytophaga ochracea DSM 7271] gi|256581969|gb|ACU93104.1| DNA ligase, NAD-dependent [Capnocytophaga ochracea DSM 7271] Length = 662 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 23/45 (51%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + L + + T++ + ++ E L ++ I +IA I N F Sbjct: 512 VGETVAKKLARHYKTIEALENATIEQLVEVDEIGNQIASSIVNFF 556 >gi|219667570|ref|YP_002458005.1| DNA ligase, NAD-dependent [Desulfitobacterium hafniense DCB-2] gi|254781313|sp|B8FP44|DNLJ_DESHD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|219537830|gb|ACL19569.1| DNA ligase, NAD-dependent [Desulfitobacterium hafniense DCB-2] Length = 659 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 27/55 (49%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G ++L Q +GT++ + ++ E L I + +A + F + ++H Sbjct: 509 GIRHVGEKAGKILAQKYGTMEDLEKAQVEELQEIPDVGPAMAQSVAQFFQQESTH 563 >gi|301066103|ref|YP_003788126.1| NAD-dependent DNA ligase [Lactobacillus casei str. Zhang] gi|300438510|gb|ADK18276.1| NAD-dependent DNA ligase [Lactobacillus casei str. Zhang] Length = 674 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 AI R+ + L I +G R+L + FG + + +S E +A + I IA Sbjct: 502 AINNSRQNSVERLIFGL-GIRHVGGKAARILAEHFGDLDHLMTASQEAIADVPNIGPTIA 560 Query: 601 CKIYNHFH 608 I +F Sbjct: 561 EAIVTYFK 568 >gi|255531337|ref|YP_003091709.1| DNA protecting protein DprA [Pedobacter heparinus DSM 2366] gi|255344321|gb|ACU03647.1| DNA protecting protein DprA [Pedobacter heparinus DSM 2366] Length = 363 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 26/50 (52%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 L I +G + R LL FG+ + I ++ L I GI + +A +I NH Sbjct: 9 LTLIKSVGDVIARNLLDQFGSAEAIFKADKYQLMEISGIGEVVATQILNH 58 >gi|227535466|ref|ZP_03965515.1| DNA ligase (polydeoxyribonucleotide synthase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227186876|gb|EEI66943.1| DNA ligase (polydeoxyribonucleotide synthase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 674 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 AI R+ + L I +G R+L + FG + + +S E +A + I IA Sbjct: 502 AINNSRQNSVERLIFGL-GIRHVGGKAARILAEHFGDLDHLMTASQEAIADVPNIGPTIA 560 Query: 601 CKIYNHFH 608 I +F Sbjct: 561 EAIVTYFK 568 >gi|239631844|ref|ZP_04674875.1| NAD-dependent DNA ligase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526309|gb|EEQ65310.1| NAD-dependent DNA ligase [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 674 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 AI R+ + L I +G R+L + FG + + +S E +A + I IA Sbjct: 502 AINNSRQNSVERLIFGL-GIRHVGGKAARILAEHFGDLDHLMTASQEAIADVPNIGPTIA 560 Query: 601 CKIYNHFH 608 I +F Sbjct: 561 EAIVTYFK 568 >gi|191637997|ref|YP_001987163.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Lactobacillus casei BL23] gi|254781352|sp|B3WD54|DNLJ_LACCB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|190712299|emb|CAQ66305.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Lactobacillus casei BL23] gi|327382073|gb|AEA53549.1| DNA ligase [Lactobacillus casei LC2W] gi|327385217|gb|AEA56691.1| DNA ligase [Lactobacillus casei BD-II] Length = 674 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 AI R+ + L I +G R+L + FG + + +S E +A + I IA Sbjct: 502 AINNSRQNSVERLIFGL-GIRHVGGKAARILAEHFGDLDHLMTASQEAIADVPNIGPTIA 560 Query: 601 CKIYNHFH 608 I +F Sbjct: 561 EAIVTYFK 568 >gi|89097084|ref|ZP_01169975.1| DNA ligase [Bacillus sp. NRRL B-14911] gi|89088464|gb|EAR67574.1| DNA ligase [Bacillus sp. NRRL B-14911] Length = 668 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 24/54 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G + L Q F ++ + +S + L +I I K+A I F + + Sbjct: 511 GIRHVGAKAAKTLAQHFSSMDNLMAASEDDLTAINEIGGKMAGAIVAFFEQEEA 564 >gi|83814168|ref|YP_445312.1| DNA processing protein DprA [Salinibacter ruber DSM 13855] gi|83755562|gb|ABC43675.1| DNA processing protein DprA [Salinibacter ruber DSM 13855] Length = 388 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 27/50 (54%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 L ++G+GP R R LL +F T I R+S TL ++G+ + A I Sbjct: 26 LSLVSGVGPQRLRALLAAFETPTAIFRASRSTLTQVDGVGDQTAEAILTF 75 >gi|116493340|ref|YP_805075.1| NAD-dependent DNA ligase [Pediococcus pentosaceus ATCC 25745] gi|122265196|sp|Q03DT9|DNLJ_PEDPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116103490|gb|ABJ68633.1| NAD-dependent DNA ligase [Pediococcus pentosaceus ATCC 25745] Length = 675 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 AI RK + + L I G+G R L + FGT+ + +++ E +++ I + +A Sbjct: 503 AIDNSRKNSLERLINGL-GIQGVGTKMARTLAEKFGTMDNLMQTTIEEFDAVDTIGETLA 561 Query: 601 CKIYNHFHKN 610 + F + Sbjct: 562 NNLATFFQSD 571 >gi|325125239|gb|ADY84569.1| DNA ligase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 671 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 RK + L I+ +G +L+ + F + I+ +S + L +I+ I IA + + Sbjct: 500 RKNSVELVLFGLGIDNVGGKAAQLIARKFKNMSKIASASVQELTAIDTIGMTIAESLTAY 559 Query: 607 FHKNTS 612 F + Sbjct: 560 FQPEEA 565 >gi|317491275|ref|ZP_07949711.1| DNA ligase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920822|gb|EFV42145.1| DNA ligase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 678 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 22/48 (45%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +G L FG+++ + + E L S++ + + +A + + + Sbjct: 525 VGEATAANLAAHFGSLEALREADVEALKSVQDVGEVVAKHVRHFLGEE 572 >gi|152975618|ref|YP_001375135.1| excinuclease ABC subunit C [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024370|gb|ABS22140.1| Excinuclease ABC C subunit domain protein [Bacillus cytotoxicus NVH 391-98] Length = 124 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G++ +I +L+VGKA +++RIK + N + ++ I + +E Sbjct: 45 GIFMFYNIHDELLFVGKARKIRQRIKKHFEDNVSPMKAHR--DEVYRIDVCLVEDPMERE 102 Query: 71 LLEANMIKRLKPRFNI 86 + E +I L+ ++NI Sbjct: 103 IYETYIINTLQAKYNI 118 >gi|163845839|ref|YP_001633883.1| DNA ligase [Chloroflexus aurantiacus J-10-fl] gi|222523550|ref|YP_002568020.1| DNA ligase, NAD-dependent [Chloroflexus sp. Y-400-fl] gi|190359243|sp|A9WCA1|DNLJ_CHLAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781286|sp|B9LHI6|DNLJ_CHLSY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|163667128|gb|ABY33494.1| DNA ligase, NAD-dependent [Chloroflexus aurantiacus J-10-fl] gi|222447429|gb|ACM51695.1| DNA ligase, NAD-dependent [Chloroflexus sp. Y-400-fl] Length = 709 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 13/73 (17%) Query: 541 AITTHRKRRKKAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 AI R+R PLD I +G + + L+ + G++ I + E L I G Sbjct: 510 AIDAARQR-------PLDRLLVGLGIRYVGTVAAQTLVAALGSLDAIMAARQEELEQIPG 562 Query: 595 ISKKIACKIYNHF 607 I +A I + F Sbjct: 563 IGPVVAASIVDFF 575 >gi|322652148|gb|EFY48510.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] Length = 571 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 20/45 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G L FGT++ + ++ + L + + +A ++N Sbjct: 520 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFL 564 >gi|304405678|ref|ZP_07387337.1| DNA ligase, NAD-dependent [Paenibacillus curdlanolyticus YK9] gi|304345717|gb|EFM11552.1| DNA ligase, NAD-dependent [Paenibacillus curdlanolyticus YK9] Length = 689 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 2/68 (2%) Query: 542 ITTHRKRRKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 I K + + + L I G ++L FG++ + +++ E L + I + Sbjct: 510 IEAFEKSKSRDLAAFLFALGIPNTGKATTKVLADHFGSLDAVLQATEEQLVQLPDIGGIV 569 Query: 600 ACKIYNHF 607 A I + F Sbjct: 570 ADSIVSFF 577 >gi|189425977|ref|YP_001953154.1| DNA ligase, NAD-dependent [Geobacter lovleyi SZ] gi|254781338|sp|B3E8F8|DNLJ_GEOLS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|189422236|gb|ACD96634.1| DNA ligase, NAD-dependent [Geobacter lovleyi SZ] Length = 683 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 23/49 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G R L + FG++ + ++ E L SI + +A I + F Sbjct: 528 GIRHVGERTARTLAERFGSIDNLQTATLEELTSIRDVGPAVAISIRSFF 576 >gi|145590377|ref|YP_001152379.1| DEAD/DEAH box helicase domain-containing protein [Pyrobaculum arsenaticum DSM 13514] gi|145282145|gb|ABP49727.1| DEAD/DEAH box helicase domain protein [Pyrobaculum arsenaticum DSM 13514] Length = 710 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Query: 562 GIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605 G+G +R R+L F T++ I+R+S +AS+ G +K+A I Sbjct: 656 GVGRVRARVLYNFGFRTLRDIARASVREIASLPGFGEKLAESIIE 700 >gi|262382012|ref|ZP_06075150.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_33B] gi|262297189|gb|EEY85119.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_33B] Length = 664 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 36/81 (44%), Gaps = 14/81 (17%) Query: 548 RRKKAAYSPLDE--------------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 + + S L+E I +G + L +F +++ + ++S E L +++ Sbjct: 485 KSAQNLMSSLEESKQVPFERVLFGLGIRFVGETVAKRLASAFHSIEALEQASLEDLVAVD 544 Query: 594 GISKKIACKIYNHFHKNTSHT 614 I ++IA + ++F + T Sbjct: 545 EIGERIAQSVLSYFSDEKNRT 565 >gi|257069044|ref|YP_003155299.1| DNA ligase, NAD-dependent [Brachybacterium faecium DSM 4810] gi|256559862|gb|ACU85709.1| DNA ligase, NAD-dependent [Brachybacterium faecium DSM 4810] Length = 871 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 25/49 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L ++G++ I +S E L+ +G+ + IA + F Sbjct: 680 SIRHVGPTAARSLATAYGSMDAIREASVEQLSDTDGVGEIIAEAVVEWF 728 >gi|330751993|emb|CBL80506.1| DNA ligase [uncultured Polaribacter sp.] Length = 665 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 20/44 (45%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 +G + L + F ++ + ++ E L + I +IA I + Sbjct: 515 VGETVAKKLAKHFKSIDHLMTATFEELIKADEIGDRIAQSILDF 558 >gi|258508011|ref|YP_003170762.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus GG] gi|257147938|emb|CAR86911.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus GG] gi|259649339|dbj|BAI41501.1| DNA ligase [Lactobacillus rhamnosus GG] Length = 674 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 26/53 (49%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R+L + FG++ + + + +A+I I IA + +F +T Sbjct: 519 GIRHVGGKAARILAEHFGSLDELMAADQDQVAAIPNIGPTIAEAVVTYFKTDT 571 >gi|229551868|ref|ZP_04440593.1| DNA ligase (NAD(+)) [Lactobacillus rhamnosus LMS2-1] gi|258539286|ref|YP_003173785.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus Lc 705] gi|229314812|gb|EEN80785.1| DNA ligase (NAD(+)) [Lactobacillus rhamnosus LMS2-1] gi|257150962|emb|CAR89934.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus Lc 705] Length = 674 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 26/53 (49%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R+L + FG++ + + + +A+I I IA + +F +T Sbjct: 519 GIRHVGGKAARILAEHFGSLDELMAADQDQVAAIPNIGPTIAEAVVTYFKTDT 571 >gi|207110232|ref|ZP_03244394.1| excinuclease ABC subunit C [Helicobacter pylori HPKX_438_CA4C1] Length = 121 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 41/116 (35%), Positives = 59/116 (50%), Gaps = 3/116 (2%) Query: 300 PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358 PE ILL+ E L+ QY K+ +++PK+G+K +IE A+ NA Sbjct: 8 PEQILLNACSNETLKELQEFISHQYSKKIALSIPKKGDKLALIETAMKNAQE--IFSQEK 65 Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 + +IL++ F L +P R+EI+D SH VG MVV N F KN YR+ Sbjct: 66 TSNEDLILEEARSLFKLECVPYRVEIFDTSHHSSSQCVGGMVVYENNAFQKNSYRR 121 >gi|199597353|ref|ZP_03210784.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus HN001] gi|199591869|gb|EDY99944.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus HN001] Length = 674 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 26/53 (49%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R+L + FG++ + + + +A+I I IA + +F +T Sbjct: 519 GIRHVGGKAARILAEHFGSLDELMAADQDQVAAIPNIGPTIAEAVVTYFKTDT 571 >gi|332159494|ref|YP_004424773.1| ski2-like helicase [Pyrococcus sp. NA2] gi|331034957|gb|AEC52769.1| ski2-like helicase [Pyrococcus sp. NA2] Length = 715 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 7/76 (9%) Query: 542 ITTHRKRRKKAAYS------PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEG 594 I R R + + PL E+ IG R R L + F + I + P L +EG Sbjct: 622 IEYLRVLRIRVKHGIREELIPLMELPSIGRKRARALYNAGFKDLDSIRNARPSELLRVEG 681 Query: 595 ISKKIACKIYNHFHKN 610 I K + + ++ Sbjct: 682 IGAKTVEAMLRYLGRD 697 >gi|125972980|ref|YP_001036890.1| DNA protecting protein DprA [Clostridium thermocellum ATCC 27405] gi|256004777|ref|ZP_05429752.1| DNA protecting protein DprA [Clostridium thermocellum DSM 2360] gi|281417191|ref|ZP_06248211.1| DNA protecting protein DprA [Clostridium thermocellum JW20] gi|125713205|gb|ABN51697.1| DNA protecting protein DprA [Clostridium thermocellum ATCC 27405] gi|255991227|gb|EEU01334.1| DNA protecting protein DprA [Clostridium thermocellum DSM 2360] gi|281408593|gb|EFB38851.1| DNA protecting protein DprA [Clostridium thermocellum JW20] gi|316940784|gb|ADU74818.1| DNA protecting protein DprA [Clostridium thermocellum DSM 1313] Length = 370 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 24/42 (57%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 L I GIG ++ R LL+ FG + + ++ LA + +++K Sbjct: 11 LSSIPGIGAVKSRKLLEHFGDIHNVWSATAAELAVLPFLNRK 52 >gi|238855396|ref|ZP_04645707.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 269-3] gi|260665363|ref|ZP_05866211.1| DNA ligase, NAD-dependent [Lactobacillus jensenii SJ-7A-US] gi|282932093|ref|ZP_06337550.1| DNA ligase (NAD(+)) [Lactobacillus jensenii 208-1] gi|238831994|gb|EEQ24320.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 269-3] gi|260560867|gb|EEX26843.1| DNA ligase, NAD-dependent [Lactobacillus jensenii SJ-7A-US] gi|281303772|gb|EFA95917.1| DNA ligase (NAD(+)) [Lactobacillus jensenii 208-1] Length = 669 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 AI R+ + + L I+ +G L++Q F + I ++S L +I+ I + IA Sbjct: 496 AIDNSRQNSVELLLNGL-GIDHVGAKAALLIVQRFKNLNKIMQASVSELTAIDTIGETIA 554 Query: 601 CKIYNHF 607 I +F Sbjct: 555 ESITTYF 561 >gi|16080315|ref|NP_391142.1| excinuclease [Bacillus subtilis subsp. subtilis str. 168] gi|221311206|ref|ZP_03593053.1| hypothetical protein Bsubs1_17696 [Bacillus subtilis subsp. subtilis str. 168] gi|221315533|ref|ZP_03597338.1| hypothetical protein BsubsN3_17612 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320448|ref|ZP_03601742.1| hypothetical protein BsubsJ_17575 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324732|ref|ZP_03606026.1| hypothetical protein BsubsS_17726 [Bacillus subtilis subsp. subtilis str. SMY] gi|321312808|ref|YP_004205095.1| putative excinuclease [Bacillus subtilis BSn5] gi|3915567|sp|O32158|YURQ_BACSU RecName: Full=Uncharacterized protein yurQ gi|2635759|emb|CAB15252.1| putative excinuclease [Bacillus subtilis subsp. subtilis str. 168] gi|291485732|dbj|BAI86807.1| putative excinuclease [Bacillus subtilis subsp. natto BEST195] gi|320019082|gb|ADV94068.1| putative excinuclease [Bacillus subtilis BSn5] Length = 124 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G++ +I +L+VGKA L++RIK + + ++ I V +E Sbjct: 45 GIFMFYNIHDELLFVGKARKLRQRIKKHFEDTVSPIKHHR--DEVYKIEVCVVDDPMERE 102 Query: 71 LLEANMIKRLKPRFNI 86 + E +I ++NI Sbjct: 103 IYETYIINTQHSKYNI 118 >gi|300114089|ref|YP_003760664.1| DNA ligase, NAD-dependent [Nitrosococcus watsonii C-113] gi|299540026|gb|ADJ28343.1| DNA ligase, NAD-dependent [Nitrosococcus watsonii C-113] Length = 675 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 23/47 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G ++L + FG++ ++ +S E L + I +A I F + Sbjct: 522 VGEATAQVLTKEFGSLAALASASEERLQQVVDIGPVVAAHIAAFFRQ 568 >gi|294497111|ref|YP_003560811.1| DNA ligase, NAD-dependent [Bacillus megaterium QM B1551] gi|294347048|gb|ADE67377.1| DNA ligase, NAD-dependent [Bacillus megaterium QM B1551] Length = 668 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 7/74 (9%) Query: 541 AITTHRKRRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 AI KK + L I +G + L Q F T+ +++++ + L +I I Sbjct: 494 AIGA----SKKNSLERLLFGLGIRHVGAKAAKTLAQHFETIDKLTKATYDELVAINEIGA 549 Query: 598 KIACKIYNHFHKNT 611 K+A I +F + Sbjct: 550 KMADAIVAYFTQEE 563 >gi|254468809|ref|ZP_05082215.1| DNA ligase, NAD-dependent [beta proteobacterium KB13] gi|207087619|gb|EDZ64902.1| DNA ligase, NAD-dependent [beta proteobacterium KB13] Length = 669 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 25/56 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + +++ GT+ + ++S + I + +A ++ F ++ + Sbjct: 516 GIRNVGEATSKDIVKKLGTLDNVMKASIDDFLEINDVGPVVAQSLHQFFQEDENKA 571 Score = 37.8 bits (86), Expect = 5.1, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 10/62 (16%) Query: 559 EINGIGPLRKRLLLQSF------GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I G+G ++ F + I E + +EG ++ A + + Sbjct: 450 NIEGLGAK----IIDHFFEKGLIKNISDIYHLDYEEIQKMEGFGERSAENLKEAIESSKK 505 Query: 613 HT 614 T Sbjct: 506 TT 507 >gi|148642899|ref|YP_001273412.1| ATP-dependent helicase [Methanobrevibacter smithii ATCC 35061] gi|148551916|gb|ABQ87044.1| ATP-dependent helicase [Methanobrevibacter smithii ATCC 35061] Length = 693 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 +G R RLL+++FG +S +S + L +EGI K+A K+ Sbjct: 648 LGRKRARLLMKTFG--DNLSEASEKDLQKVEGIGPKLAGKVK 687 >gi|322372151|ref|ZP_08046692.1| 50S ribosomal protein L32e [Haladaptatus paucihalophilus DX253] gi|320548160|gb|EFW89833.1| 50S ribosomal protein L32e [Haladaptatus paucihalophilus DX253] Length = 234 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Query: 558 DEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605 ++I+G+G + L ++ + +V+ I +S + L+ ++GI +A +I Sbjct: 9 EDISGVGESKAESLREAGYESVEDIKAASQDDLSEVDGIGNALAARIKA 57 >gi|254514186|ref|ZP_05126247.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR5-3] gi|219676429|gb|EED32794.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR5-3] Length = 675 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 19/45 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G L FG+++ I + ++L + + +A + F Sbjct: 523 VGEATALALATYFGSIEAIRAADLDSLLEVPDVGPVVAQHLRAFF 567 >gi|293188969|ref|ZP_06607703.1| DNA ligase, NAD-dependent [Actinomyces odontolyticus F0309] gi|292822104|gb|EFF81029.1| DNA ligase, NAD-dependent [Actinomyces odontolyticus F0309] Length = 777 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 27/49 (55%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L + F ++ + +S E L+++EG+ ++I + + F Sbjct: 618 SIRHVGPTAARALAEKFLSMDALRAASVEELSAVEGVGEEIGRSLRDWF 666 >gi|154507531|ref|ZP_02043173.1| hypothetical protein ACTODO_00010 [Actinomyces odontolyticus ATCC 17982] gi|153799320|gb|EDN81740.1| hypothetical protein ACTODO_00010 [Actinomyces odontolyticus ATCC 17982] Length = 777 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 27/49 (55%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L + F ++ + +S E L+++EG+ ++I + + F Sbjct: 618 SIRHVGPTAARALAEKFLSMDALRAASVEELSAVEGVGEEIGRSLRDWF 666 >gi|319790038|ref|YP_004151671.1| PHP domain protein [Thermovibrio ammonificans HB-1] gi|317114540|gb|ADU97030.1| PHP domain protein [Thermovibrio ammonificans HB-1] Length = 575 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 5/53 (9%) Query: 557 LDEINGIGPLRKRLLLQSFG--TVKMISRSSPE--TLASIEGISKKIACKIYN 605 L +I G+GP +LL + G +++ + R+ E L + G K KI Sbjct: 93 LLDIPGVGPKTVKLLYEELGIRSIEDLKRA-IERGELLKLPGFGPKRVEKIKK 144 >gi|154492286|ref|ZP_02031912.1| hypothetical protein PARMER_01920 [Parabacteroides merdae ATCC 43184] gi|154087511|gb|EDN86556.1| hypothetical protein PARMER_01920 [Parabacteroides merdae ATCC 43184] Length = 666 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 29/52 (55%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G + L+ +F +++ + ++S E L +++ I ++IA I +F + T Sbjct: 515 VGETVAKRLVSAFHSMEQLEQASFEDLTAVDEIGERIARSIIAYFADERNRT 566 >gi|104773603|ref|YP_618583.1| NAD-dependent DNA ligase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|122984006|sp|Q1GBF7|DNLJ_LACDA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|103422684|emb|CAI97297.1| NAD-dependent DNA ligase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 671 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 RK + L I+ +G +L+ + F + I+ +S + L +I+ I IA + + Sbjct: 500 RKNSVELVLFGLGIDNVGGKAAQLIARKFKNMSKIASASVQELTAIDTIGMTIAESLTAY 559 Query: 607 FHKNTS 612 F + + Sbjct: 560 FQQEEA 565 >gi|313125807|ref|YP_004036077.1| LSU ribosomal protein l32e [Halogeometricum borinquense DSM 11551] gi|312292172|gb|ADQ66632.1| LSU ribosomal protein L32E [Halogeometricum borinquense DSM 11551] Length = 234 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L++I+G+GP + L ++ + +V+ + ++ LA + GI +A +I Sbjct: 8 ELEDISGVGPSKADALSEAGYESVEDVKAANQSELADVSGIGNALAARIKA 58 >gi|269968476|ref|ZP_06182487.1| DNA ligase [Vibrio alginolyticus 40B] gi|269826910|gb|EEZ81233.1| DNA ligase [Vibrio alginolyticus 40B] Length = 690 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 20/52 (38%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L F T+ I ++ E L ++ I +A I F + + Sbjct: 541 VGEATAANLAMHFKTLGAIQNATEEQLIEVQDIGAVVAQHITTFFSEEQNQA 592 >gi|91225892|ref|ZP_01260861.1| DNA ligase [Vibrio alginolyticus 12G01] gi|91189542|gb|EAS75818.1| DNA ligase [Vibrio alginolyticus 12G01] Length = 670 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 20/52 (38%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L F T+ I ++ E L ++ I +A I F + + Sbjct: 521 VGEATAANLAMHFKTLGAIQNATEEQLIEVQDIGAVVAQHITTFFSEEQNQA 572 >gi|311897183|dbj|BAJ29591.1| hypothetical protein KSE_37930 [Kitasatospora setae KM-6054] Length = 283 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 9/81 (11%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKA-YNLQKRIKSYMHSNNHTHRIT--HMISQINNIRF 60 +++ E GVYQ+ + G +YVGKA +L R+++++ + RI M Sbjct: 47 KELKERAGVYQLY-LDGEFVYVGKADKSLPARLRNHLRKLSGRRRIALGEM-----TFSC 100 Query: 61 TVTCTEVEALLLEANMIKRLK 81 + AL E +I K Sbjct: 101 LYVAEDFSALAPEQLLISHHK 121 >gi|296393986|ref|YP_003658870.1| DNA ligase, NAD-dependent [Segniliparus rotundus DSM 44985] gi|296181133|gb|ADG98039.1| DNA ligase, NAD-dependent [Segniliparus rotundus DSM 44985] Length = 690 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 24/50 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I +GP R L FG+V I + +TLA ++G+ IA + F Sbjct: 536 SIRHVGPTAARALATRFGSVDAIFSADEQTLAEVDGVGPTIAASVIEWFQ 585 >gi|197119085|ref|YP_002139512.1| DNA uptake/processing protein SMF [Geobacter bemidjiensis Bem] gi|197088445|gb|ACH39716.1| DNA uptake/processing protein SMF [Geobacter bemidjiensis Bem] Length = 359 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 2/53 (3%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI--YNHFHKNTSH 613 +G + LL FGT + + +SP+ L+ + G+S + A I +++ H+ +S Sbjct: 15 VGNVTFLRLLSRFGTPERVLEASPQELSEVRGVSPQAATSIAGHDYAHQASSE 67 >gi|322437173|ref|YP_004219385.1| DNA ligase, NAD-dependent [Acidobacterium sp. MP5ACTX9] gi|321164900|gb|ADW70605.1| DNA ligase, NAD-dependent [Acidobacterium sp. MP5ACTX9] Length = 704 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 3/71 (4%) Query: 547 KRRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 + KKA S + I +G LL FG ++ + ++ + L + I +A + Sbjct: 535 AKSKKAPLSRVLLGLGIRHVGQRTAELLASHFGAIEPLMGATQDELVQVNEIGPIVAATV 594 Query: 604 YNHFHKNTSHT 614 ++ F + + Sbjct: 595 HDFFAQEQNQA 605 >gi|225175754|ref|ZP_03729747.1| DNA protecting protein DprA [Dethiobacter alkaliphilus AHT 1] gi|225168678|gb|EEG77479.1| DNA protecting protein DprA [Dethiobacter alkaliphilus AHT 1] Length = 361 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 26/46 (56%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 EI G+G + R LLQ F T + I R++ L S+ GI +K A I Sbjct: 3 EIKGLGSVTCRKLLQVFQTPEEIYRAAKGDLLSVAGIGEKTAEIIL 48 >gi|11498598|ref|NP_069826.1| DNA repair and recombination protein RadA [Archaeoglobus fulgidus DSM 4304] gi|3914552|sp|O29269|RADA_ARCFU RecName: Full=DNA repair and recombination protein radA gi|2649602|gb|AAB90248.1| DNA repair protein RAD51 (radA) [Archaeoglobus fulgidus DSM 4304] Length = 337 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L++I G+GP R L ++ + T++ ++ +SP LA++ GI++ A KI K Sbjct: 13 ELEDIPGVGPETARKLREAGYSTIEAVAVASPSELANVGGITEGNAVKIIQAARK 67 >gi|313884866|ref|ZP_07818618.1| DNA ligase (NAD+) [Eremococcus coleocola ACS-139-V-Col8] gi|312619557|gb|EFR30994.1| DNA ligase (NAD+) [Eremococcus coleocola ACS-139-V-Col8] Length = 673 Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 24/115 (20%) Query: 508 EKFFVKKGEALVLN--MRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLD------E 559 + + + + L L +Q + EA + + L+ Sbjct: 470 DLYHLTLADLLKLPNTKEKSAQKLLQAI--EA--------------SKTNSLERLLFGFG 513 Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G RL+ Q F T++ +S++S E + +I+GI IA + + SH Sbjct: 514 IRHVGAKAARLVAQKFDTIEALSQASEEEITNIDGIGTIIAKSLVDFLQDEASHA 568 >gi|254445017|ref|ZP_05058493.1| DNA ligase, NAD-dependent [Verrucomicrobiae bacterium DG1235] gi|198259325|gb|EDY83633.1| DNA ligase, NAD-dependent [Verrucomicrobiae bacterium DG1235] Length = 668 Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 28/56 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L ++ G V+ +S +S E L I+GI +K A I +F + T Sbjct: 515 GIPQVGASAAKDLAKALGGVRELSEASVERLVEIDGIGEKTASGIVAYFGDERNKT 570 >gi|167465474|ref|ZP_02330563.1| DNA ligase, NAD-dependent [Paenibacillus larvae subsp. larvae BRL-230010] Length = 579 Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 5/70 (7%) Query: 541 AITTHRKRRKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 AI K +++ S L I G ++L + F ++ + + E L ++ + Sbjct: 404 AIE---KSKERDLSSFLFALGIPNTGKTTTKVLAEHFRSLDKVMDAVVEELIALPDVGGI 460 Query: 599 IACKIYNHFH 608 +A IY F Sbjct: 461 VADSIYTFFR 470 >gi|147678862|ref|YP_001213077.1| NAD-dependent DNA ligase [Pelotomaculum thermopropionicum SI] gi|190359268|sp|A5CZ68|DNLJ_PELTS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|146274959|dbj|BAF60708.1| NAD-dependent DNA ligase [Pelotomaculum thermopropionicum SI] Length = 679 Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 23/54 (42%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G ++L + ++ + ++ E L +I I KIA I F + Sbjct: 525 GIRHVGERAAKILANHYQSLSGLMSATQEELVNIPEIGPKIAASIVEFFSNEQN 578 >gi|15613212|ref|NP_241515.1| NAD-dependent DNA ligase LigA [Bacillus halodurans C-125] gi|15213980|sp|Q9KF37|DNLJ_BACHD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|10173263|dbj|BAB04368.1| DNA ligase (polydeoxyribonucleotide synthase (NAD+)) [Bacillus halodurans C-125] Length = 669 Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 6/64 (9%) Query: 552 AAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 + S L+ I +G + L F T+ + R+S + L ++ I +K+A I + Sbjct: 498 SKKSSLERLLFGLGIRFVGSKAAKTLAMHFPTMTELRRASYDELIAVNEIGEKMAASIVS 557 Query: 606 HFHK 609 +F K Sbjct: 558 YFEK 561 >gi|300813135|ref|ZP_07093512.1| DNA ligase (NAD(+)) [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300495889|gb|EFK31034.1| DNA ligase (NAD(+)) [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 671 Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 RK + L I+ +G +L+ + F + I+ +S + L +I+ I IA + + Sbjct: 500 RKNSVELVLFGLGIDNVGGKAAQLIARKFKNMSKIASASVQELTAIDTIGMTIAESLTAY 559 Query: 607 FHKNTS 612 F + + Sbjct: 560 FQQEEA 565 >gi|291414832|ref|XP_002723664.1| PREDICTED: excision repair cross-complementing 1 isofrom 2-like [Oryctolagus cuniculus] Length = 301 Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 25/41 (60%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + LL +FG+++ + +S + LA G+ + A ++Y+ H+ Sbjct: 254 QTLLATFGSLEQLIAASRDDLALCPGLGPQKARRLYDVLHE 294 >gi|87119444|ref|ZP_01075341.1| NAD-dependent DNA ligase [Marinomonas sp. MED121] gi|86164920|gb|EAQ66188.1| NAD-dependent DNA ligase [Marinomonas sp. MED121] Length = 676 Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 26/93 (27%) Query: 528 YFIQRLRDEA------HRF--AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVK 579 + + EA HRF A+ I +G R L + F T+ Sbjct: 497 KLLTSI--EASKQTEFHRFIYALG----------------IREVGEATARTLTRHFKTLD 538 Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I ++ E+L ++ + +A + F K+++ Sbjct: 539 KIIEANTESLVKVDDVGPIVAQHLRRFFFKDSN 571 >gi|254495534|ref|ZP_05108458.1| DNA ligase, NAD-dependent [Polaribacter sp. MED152] gi|85819890|gb|EAQ41047.1| DNA ligase, NAD-dependent [Polaribacter sp. MED152] Length = 665 Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 22/44 (50%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 +G + L + F ++ + + ETL +++ I +IA I + Sbjct: 515 VGETVAKKLAKHFKSIDNLMAADFETLVAVDEIGDRIAQSIIDF 558 >gi|269960659|ref|ZP_06175031.1| DNA ligase [Vibrio harveyi 1DA3] gi|269834736|gb|EEZ88823.1| DNA ligase [Vibrio harveyi 1DA3] Length = 670 Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 21/52 (40%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L Q F + I +++ E L ++ I +A I F + + Sbjct: 521 VGEATAANLAQHFKNLDAIQQATEEQLIEVQDIGVIVAKHITTFFDEEKNQA 572 >gi|228997675|ref|ZP_04157283.1| hypothetical protein bmyco0003_22470 [Bacillus mycoides Rock3-17] gi|229005264|ref|ZP_04162981.1| hypothetical protein bmyco0002_22030 [Bacillus mycoides Rock1-4] gi|228756026|gb|EEM05354.1| hypothetical protein bmyco0002_22030 [Bacillus mycoides Rock1-4] gi|228762085|gb|EEM11023.1| hypothetical protein bmyco0003_22470 [Bacillus mycoides Rock3-17] Length = 124 Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G++ +I +L+VGKA +++RIK + N I ++ I + +E Sbjct: 45 GIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSP--IQAHRDEVYRIDACIVEDPMERE 102 Query: 71 LLEANMIKRLKPRFNI 86 + E +I + ++N+ Sbjct: 103 IYETYIINEFQAKYNV 118 >gi|94971682|ref|YP_593730.1| DNA ligase, NAD-dependent [Candidatus Koribacter versatilis Ellin345] gi|122986011|sp|Q1IHJ4|DNLJ_ACIBL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|94553732|gb|ABF43656.1| DNA ligase, NAD-dependent [Candidatus Koribacter versatilis Ellin345] Length = 673 Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 17/80 (21%) Query: 550 KKAAYSPLDEING-----------------IGPLRKRLLLQSFGTVKMISRSSPETLASI 592 KK+A + LDEI G +G + L + FG++ + +++ E L + Sbjct: 496 KKSAQNILDEIKGTKKLPLERVIYGLGIRMVGERTAQFLAEHFGSLDGVMKATEEELLEV 555 Query: 593 EGISKKIACKIYNHFHKNTS 612 E + +IA I+ F + ++ Sbjct: 556 EEVGPRIAQSIHEFFAEPSN 575 >gi|261345310|ref|ZP_05972954.1| DNA ligase, NAD-dependent [Providencia rustigianii DSM 4541] gi|282566645|gb|EFB72180.1| DNA ligase, NAD-dependent [Providencia rustigianii DSM 4541] Length = 678 Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 6/66 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I +G L + ++ + + E+L +++ I + +A + Sbjct: 508 KSKQTTLARFIYALGIREVGEATAANLASHYASLDAVMAADEESLKAVQDIGEVVAKHVV 567 Query: 605 NHFHKN 610 N FH+ Sbjct: 568 NFFHEE 573 >gi|328869954|gb|EGG18329.1| BRCT domain-containing protein [Dictyostelium fasciculatum] Length = 842 Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 27/56 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I G+G + L + F T++ ++ +S + + + + I+ IY +FH + Sbjct: 663 GIPGVGKASCKWLAERFTTIESLATASLQDIEVVGDLGPNISTNIYYYFHPTDQQS 718 >gi|168187649|ref|ZP_02622284.1| DNA ligase, NAD-dependent [Clostridium botulinum C str. Eklund] gi|169294495|gb|EDS76628.1| DNA ligase, NAD-dependent [Clostridium botulinum C str. Eklund] Length = 649 Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 6/63 (9%) Query: 551 KAAYSPLDE------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L+ + +G +LL++ F +++ + + E + SI+GI + +IY Sbjct: 482 KSKHCKLENFIFALGVPSVGLGTAKLLVKKFKSIEKVMNCNLEEIYSIDGIGDVVGNEIY 541 Query: 605 NHF 607 N+F Sbjct: 542 NYF 544 >gi|313123177|ref|YP_004033436.1| DNA ligase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279740|gb|ADQ60459.1| DNA ligase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 671 Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 RK + L I+ +G +L+ Q F + I+ +S + L +I+ I IA + + Sbjct: 500 RKNSVELVLFGLGIDNVGRKAAQLIAQKFKNMSKIASASVQELTAIDTIGMTIAESLTAY 559 Query: 607 FHKNTS 612 F + + Sbjct: 560 FQQEEA 565 >gi|317401960|gb|EFV82562.1| DNA ligase [Achromobacter xylosoxidans C54] Length = 699 Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 24/51 (47%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G R + + FG+++ I + + L+S+ + +A I F + Sbjct: 547 GIRHVGETTARDVARHFGSIEAIMDADEDALSSVPDVGPVVAGSIRRFFAE 597 >gi|215412865|ref|ZP_03421575.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 94_M4241A] gi|298526485|ref|ZP_07013894.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis 94_M4241A] gi|298496279|gb|EFI31573.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis 94_M4241A] Length = 691 Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG++ I+ +S + +A++EG+ IA + F Sbjct: 533 SIRHVGPTAARALATEFGSLDAIAAASTDQVAAVEGVGPTIAAAVTEWF 581 >gi|305667253|ref|YP_003863540.1| DNA ligase [Maribacter sp. HTCC2170] gi|88708187|gb|EAR00425.1| DNA ligase [Maribacter sp. HTCC2170] Length = 664 Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + L +++ + + +S E L +++ I ++IA + F + Sbjct: 515 VGETVAKKLAKAYKNIDALMAASSEELIAVDEIGERIAQSVVEFFQNERN 564 >gi|304317508|ref|YP_003852653.1| DNA ligase, NAD-dependent [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779010|gb|ADL69569.1| DNA ligase, NAD-dependent [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 659 Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 25/54 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I+ IG +L F T+ + +S + L +IE + K+A I F + + Sbjct: 507 GIDLIGSKAASILANHFKTMDSLEEASFDELTNIEEVGPKMADSIIAFFKEKQN 560 >gi|269957188|ref|YP_003326977.1| DNA ligase, NAD-dependent [Xylanimonas cellulosilytica DSM 15894] gi|269305869|gb|ACZ31419.1| DNA ligase, NAD-dependent [Xylanimonas cellulosilytica DSM 15894] Length = 830 Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%) Query: 546 RKRRK---KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 R + K + S I +GP+ R L FG++ I +S E LA++EG+ I + Sbjct: 631 RAKTKDLWRQLVS--LNIRHVGPVAARALADWFGSLDAIRAASSEELAAVEGVGPVIGAE 688 Query: 603 IYNHF 607 + F Sbjct: 689 LQAWF 693 >gi|222055066|ref|YP_002537428.1| DNA ligase, NAD-dependent [Geobacter sp. FRC-32] gi|254781339|sp|B9M861|DNLJ_GEOSF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|221564355|gb|ACM20327.1| DNA ligase, NAD-dependent [Geobacter sp. FRC-32] Length = 669 Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 5/74 (6%) Query: 541 AI--TTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 AI + HR+ + + I +G +LL +FG+V+ + +++ E L SI + + Sbjct: 501 AIEASKHREL---SRFIFALGIRHVGEHTAKLLASAFGSVEHLEKATEEELLSIREVGPQ 557 Query: 599 IACKIYNHFHKNTS 612 +A + F + Sbjct: 558 VAQSVRTFFRNPAN 571 >gi|88802793|ref|ZP_01118320.1| DNA polymerase III subunit [Polaribacter irgensii 23-P] gi|88781651|gb|EAR12829.1| DNA polymerase III subunit [Polaribacter irgensii 23-P] Length = 361 Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 5/108 (4%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P+ GV+ + D G+VLY+G+ N+ + T R + + +I + T Sbjct: 192 SVPKYLGVFYIHDKNGKVLYLGRGKNINAEVNKLFLK--ETKRALKLQDRAISITYEKTG 249 Query: 65 TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHR 112 E+ + L ++ L P++NI K P++ + L K R Sbjct: 250 NELFSRLKYYLQLETLSPKYNIK---KKRKPFLHNFNNDNFIILDKGR 294 >gi|238785571|ref|ZP_04629551.1| DNA ligase [Yersinia bercovieri ATCC 43970] gi|238713506|gb|EEQ05538.1| DNA ligase [Yersinia bercovieri ATCC 43970] Length = 670 Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 7/48 (14%), Positives = 18/48 (37%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +G L F + + + + L S+ + + +A + N + Sbjct: 520 VGEATAANLAAHFRNMANLRAADIDELKSVPDVGEVVAKHVLNFLGEE 567 >gi|297566494|ref|YP_003685466.1| DNA ligase, NAD-dependent [Meiothermus silvanus DSM 9946] gi|296850943|gb|ADH63958.1| DNA ligase, NAD-dependent [Meiothermus silvanus DSM 9946] Length = 670 Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R L + FG + + +S + L +E ++ A +IY H+ Sbjct: 519 GIPQVGAALARTLARRFGHLDRLLAASVQDLDEVEDVALPTAERIYQTLHQKD 571 >gi|163757008|ref|ZP_02164114.1| DNA ligase [Kordia algicida OT-1] gi|161323012|gb|EDP94355.1| DNA ligase [Kordia algicida OT-1] Length = 665 Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + L + + ++ + +S L +++ I KIA + F ++ + Sbjct: 516 VGETVAKKLAKHYKSIDALMNASSNDLVNVDEIGVKIAESVAQFFAEDVN 565 >gi|119025970|ref|YP_909815.1| LigA [Bifidobacterium adolescentis ATCC 15703] gi|166215398|sp|A1A200|DNLJ_BIFAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|118765554|dbj|BAF39733.1| LigA [Bifidobacterium adolescentis ATCC 15703] Length = 892 Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 25/45 (55%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +GP R + +FGT+ I +S + L+ I+GI +IA + F Sbjct: 735 LGPPTARTIASAFGTLDAIEHASVDELSQIDGIGSEIAESVVTWF 779 >gi|327438552|dbj|BAK14917.1| NAD-dependent DNA ligase [Solibacillus silvestris StLB046] Length = 665 Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 22/53 (41%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G ++L F T+ + ++ E L I I K+A I +F Sbjct: 510 GIRHVGEKAAKILAAHFETIDALMVATEEDLKDIHEIGDKMAESIVAYFANEQ 562 >gi|212715716|ref|ZP_03323844.1| hypothetical protein BIFCAT_00616 [Bifidobacterium catenulatum DSM 16992] gi|212661083|gb|EEB21658.1| hypothetical protein BIFCAT_00616 [Bifidobacterium catenulatum DSM 16992] Length = 891 Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 26/45 (57%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +GP R++ + G++ I R+S + L+ I+GI +IA + F Sbjct: 735 LGPPTARVIANTLGSLDAIERASVDELSQIDGIGPEIAESVVTWF 779 >gi|325102906|ref|YP_004272560.1| DNA ligase, NAD-dependent [Pedobacter saltans DSM 12145] gi|324971754|gb|ADY50738.1| DNA ligase, NAD-dependent [Pedobacter saltans DSM 12145] Length = 670 Score = 51.3 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 22/49 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 +G + L F ++ + +S E L E I ++IA I +F T Sbjct: 520 VGETVAKKLALHFKNIQNLQHASFEQLIEAEEIGERIAQSILEYFSDET 568 >gi|126661836|ref|ZP_01732835.1| DNA ligase [Flavobacteria bacterium BAL38] gi|126625215|gb|EAZ95904.1| DNA ligase [Flavobacteria bacterium BAL38] Length = 663 Score = 51.3 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 22/50 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + L + + ++ I+ +S L ++ I KIA + F + Sbjct: 513 VGETVAKKLAKHYKSIDAIANASVMDLILVDEIGDKIAQSVMQFFDNQEN 562 >gi|332158421|ref|YP_004423700.1| DNA repair and recombination protein RadA [Pyrococcus sp. NA2] gi|331033884|gb|AEC51696.1| DNA repair and recombination protein RadA [Pyrococcus sp. NA2] Length = 354 Score = 51.3 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 558 DEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +++ G+GP L ++ + +++ I+ +SP L + GIS+ A KI K + Sbjct: 43 EDLPGVGPATAEKLREAGYDSLEAIAVASPIELKEVAGISEGAALKIIQAARKAAN 98 >gi|298249593|ref|ZP_06973397.1| helicase, RecD/TraA family [Ktedonobacter racemifer DSM 44963] gi|297547597|gb|EFH81464.1| helicase, RecD/TraA family [Ktedonobacter racemifer DSM 44963] Length = 757 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSF--GTVKMISRSSPETLASIEGISKKIACKI 603 K S L I GIGP+ + ++ F T+++I ++S L + GI A KI Sbjct: 103 KYLGSGL--IKGIGPVTAKRIVAHFQLDTLEIIEQASAR-LVEVPGIGASRAQKI 154 >gi|119476275|ref|ZP_01616626.1| DNA ligase [marine gamma proteobacterium HTCC2143] gi|119450139|gb|EAW31374.1| DNA ligase [marine gamma proteobacterium HTCC2143] Length = 781 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 27/50 (54%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I+ IGP + FGT+ + +S + LA +E +S K A ++++F Sbjct: 622 NISNIGPTSAARVAAHFGTMAALMAASIDDLAMVEKLSVKAASGLFDYFQ 671 Score = 50.5 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 27/52 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +G ++L + FG+++ I + PE L + I +++A +I F N Sbjct: 531 GIPDVGEETAKVLARVFGSLERIRVAKPELLIQLPDIGREVAGEITEFFADN 582 >gi|116626792|ref|YP_828948.1| DNA ligase, NAD-dependent [Candidatus Solibacter usitatus Ellin6076] gi|122251346|sp|Q01NV7|DNLJ_SOLUE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116229954|gb|ABJ88663.1| DNA ligase, NAD-dependent [Candidatus Solibacter usitatus Ellin6076] Length = 662 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 6/63 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I +G L Q+FG++ I R++ + L E + K+A + Sbjct: 495 KSRRNSLPRVLTALGIRFVGERTAVFLAQAFGSMDAIERATVDELQQAEEVGPKVAEAVV 554 Query: 605 NHF 607 F Sbjct: 555 QFF 557 >gi|260912664|ref|ZP_05919150.1| DNA ligase [Pasteurella dagmatis ATCC 43325] gi|260633042|gb|EEX51207.1| DNA ligase [Pasteurella dagmatis ATCC 43325] Length = 673 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 6/65 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA + L I +G L F T+ + ++ E L ++ + + +A +I+ Sbjct: 504 KAKKTTLARFIFALGIREVGEATALNLANYFKTLTALKEATLEQLQQVQDVGEVVANRIF 563 Query: 605 NHFHK 609 + + Sbjct: 564 VFWRE 568 >gi|258648381|ref|ZP_05735850.1| DNA ligase, NAD-dependent [Prevotella tannerae ATCC 51259] gi|260851551|gb|EEX71420.1| DNA ligase, NAD-dependent [Prevotella tannerae ATCC 51259] Length = 677 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 6/63 (9%) Query: 551 KAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ +P D I +G + + L F ++ + ++ E L +EG+ + IA + Sbjct: 504 KSKSTPFDRVLYALGIRFVGKVVAKTLAAYFHSMDALQAATLEELLQVEGVGQTIAENVR 563 Query: 605 NHF 607 F Sbjct: 564 QWF 566 >gi|238790828|ref|ZP_04634584.1| DNA ligase [Yersinia frederiksenii ATCC 33641] gi|238721075|gb|EEQ12759.1| DNA ligase [Yersinia frederiksenii ATCC 33641] Length = 670 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 19/48 (39%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +G L F T+ + + E L S+ + + +A + N + Sbjct: 520 VGEATAANLAAHFRTLDNLRAADIEALKSVPDVGEVVAKHVLNFLSEE 567 >gi|323140467|ref|ZP_08075395.1| DNA ligase (NAD+) [Phascolarctobacterium sp. YIT 12067] gi|322415035|gb|EFY05826.1| DNA ligase (NAD+) [Phascolarctobacterium sp. YIT 12067] Length = 679 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 6/63 (9%) Query: 552 AAYSPLDE------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 + + LD+ I +G R+L FG+++ + ++ PE LA I I KIA + Sbjct: 512 SKKNELDKLLFALGIRHVGAKVARILATEFGSMEKLQQAQPEELAQIRDIGDKIAESVVT 571 Query: 606 HFH 608 + Sbjct: 572 WLN 574 >gi|312194886|ref|YP_004014947.1| DNA ligase, NAD-dependent [Frankia sp. EuI1c] gi|311226222|gb|ADP79077.1| DNA ligase, NAD-dependent [Frankia sp. EuI1c] Length = 755 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 22/49 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP + L + + I +S E LA ++G+ IA + F Sbjct: 567 SIRHVGPSAAQALARELRSTDAIRAASLEELAVVDGVGPTIAAAVVEWF 615 >gi|237807406|ref|YP_002891846.1| DNA ligase, NAD-dependent [Tolumonas auensis DSM 9187] gi|237499667|gb|ACQ92260.1| DNA ligase, NAD-dependent [Tolumonas auensis DSM 9187] Length = 686 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 22/48 (45%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 IG + L Q F + + +S ETL + + + +A IY F + Sbjct: 521 IGETTAQTLAQHFSDLPALQDASVETLLKVSDVGEVMAKHIYYFFRQE 568 >gi|256545196|ref|ZP_05472562.1| DNA ligase, NAD-dependent [Anaerococcus vaginalis ATCC 51170] gi|256399237|gb|EEU12848.1| DNA ligase, NAD-dependent [Anaerococcus vaginalis ATCC 51170] Length = 668 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +G R L + + + + + + L IE I +K A I + F+ + Sbjct: 512 GIPNVGIKTARDLAEKYKSFDKLRETKQDDLIEIEDIGEKTAEDIVDFFNDS 563 >gi|172034914|ref|YP_001798708.1| hypothetical protein cce_5308 [Cyanothece sp. ATCC 51142] gi|171701678|gb|ACB54654.1| unknown [Cyanothece sp. ATCC 51142] Length = 254 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 5/49 (10%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKS-----YMHSNNHTHRI 48 ++P PG+Y + + ++LY+GKA NL+ R S Y ++ RI Sbjct: 58 KLPSQPGIYFVYTLDHQLLYIGKADNLRTRWNSHHKYQYFIESSMDSRI 106 >gi|1763756|gb|AAB54060.1| excision repair enzyme ERCC-1 [Mesocricetus auratus] Length = 127 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 25/41 (60%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + LL +FG+++ + +S E LA G+ + A ++++ H+ Sbjct: 80 QTLLATFGSLEQLLTASREDLALCPGLGPQKARRLFDVLHE 120 >gi|6576543|dbj|BAA88319.1| ERCC1 [Cricetulus griseus] Length = 293 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 25/41 (60%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + LL +FG+++ + +S E LA G+ + A ++++ H+ Sbjct: 246 QTLLATFGSLEQLLTASREDLALCPGLGPQKARRLFDVLHE 286 >gi|322382981|ref|ZP_08056811.1| NAD-dependent DNA ligase LigA-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153004|gb|EFX45464.1| NAD-dependent DNA ligase LigA-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 673 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 5/70 (7%) Query: 541 AITTHRKRRKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 AI K +++ S L I G ++L + F ++ + + E L ++ + Sbjct: 498 AIE---KSKERDLSSFLFALGIPNTGKTTTKVLAEHFRSLDKVMDAVVEELIALPDVGGI 554 Query: 599 IACKIYNHFH 608 +A IY F Sbjct: 555 VADSIYTFFR 564 >gi|166364069|ref|YP_001656342.1| DNA ligase [Microcystis aeruginosa NIES-843] gi|254781371|sp|B0JTW2|DNLJ_MICAN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166086442|dbj|BAG01150.1| DNA ligase [Microcystis aeruginosa NIES-843] Length = 669 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 31/50 (62%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + ++L +SF TV+ ++ +S LASI GI ++IA +Y+ F + Sbjct: 520 VGSVNAKILAESFRTVEELANASVTDLASIYGIGEEIAQSVYDWFRIEAN 569 >gi|80159718|ref|YP_398462.1| putative NAD-dependent DNA ligase [Clostridium phage c-st] gi|78675308|dbj|BAE47730.1| putative NAD-dependent DNA ligase [Clostridium phage c-st] Length = 649 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 6/63 (9%) Query: 551 KAAYSPLDE------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L+ I +G +LL++ F ++ I + E + SI+GI + +IY Sbjct: 482 KSKHCKLENFIFALGIQNVGLGTAKLLVKKFKSIDKIMNCNLEEIYSIDGIGDVVGNEIY 541 Query: 605 NHF 607 +F Sbjct: 542 KYF 544 >gi|269138493|ref|YP_003295193.1| NAD-dependent DNA ligase [Edwardsiella tarda EIB202] gi|267984153|gb|ACY83982.1| NAD-dependent DNA ligase [Edwardsiella tarda EIB202] gi|304558517|gb|ADM41181.1| DNA ligase [Edwardsiella tarda FL6-60] Length = 675 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 21/47 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L FG+++ + + E+L + + + +A I + + Sbjct: 521 VGEATAANLASHFGSLQALRAADLESLKRVPEVGEVVASHIVHFLSE 567 >gi|33151983|ref|NP_873336.1| NAD-dependent DNA ligase LigA [Haemophilus ducreyi 35000HP] gi|81423646|sp|Q7VMX7|DNLJ_HAEDU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|33148205|gb|AAP95725.1| DNA ligase [Haemophilus ducreyi 35000HP] Length = 686 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 6/65 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA ++ L I +G L FG+++ I ++ E L ++ + + +A ++ Sbjct: 515 KAKHTTLARFLFSLGIRDVGETTALNLANHFGSLENIRTANVEQLKEVQDVGEVVANRLV 574 Query: 605 NHFHK 609 + + Sbjct: 575 CFWQE 579 >gi|332992966|gb|AEF03021.1| DNA ligase [Alteromonas sp. SN2] Length = 326 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 23/47 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L F T++ I +S + L ++ + +A ++N F++ Sbjct: 175 VGEATAANLALHFETLEAIRNASEDELIEVQDVGGIVAAHLHNFFNE 221 >gi|295107089|emb|CBL04632.1| DNA ligase, NAD-dependent [Gordonibacter pamelaeae 7-10-1-b] Length = 731 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 15/98 (15%) Query: 513 KKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLL 571 K GE + L + AI R R +A + I +G L Sbjct: 534 KDGEPIRLGST-VAKKLVA---------AIDGSRARPFSRALFG--LGIRHVG-KTIAEL 580 Query: 572 LQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 L + + +++ + +S E LA+++G+ KIA +Y Sbjct: 581 LAAAYPSIEALMEASEEDLAALDGVGPKIARSVYLFLR 618 >gi|269303032|gb|ACZ33132.1| DNA ligase, NAD-dependent [Chlamydophila pneumoniae LPCoLN] Length = 662 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 21/78 (26%) Query: 549 RKKAAYSPLDEIN-------------------GIGPLRKRLLLQSFGTVKMISRSSPETL 589 R+++A + L+ I GIG L F T+ + ++ E L Sbjct: 484 RERSARNILESIEQAKHVDLDRFLVALGIPLIGIGVATV--LAGHFETLDRVISATFEEL 541 Query: 590 ASIEGISKKIACKIYNHF 607 S+EG+ +K+A I +F Sbjct: 542 LSLEGVGEKVAHAIAEYF 559 >gi|256852262|ref|ZP_05557648.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 27-2-CHN] gi|260661706|ref|ZP_05862617.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 115-3-CHN] gi|282934844|ref|ZP_06340077.1| DNA ligase (NAD(+)) [Lactobacillus jensenii 208-1] gi|297205571|ref|ZP_06922967.1| NAD-dependent DNA ligase LigA [Lactobacillus jensenii JV-V16] gi|256615308|gb|EEU20499.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 27-2-CHN] gi|260547453|gb|EEX23432.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 115-3-CHN] gi|281301075|gb|EFA93386.1| DNA ligase (NAD(+)) [Lactobacillus jensenii 208-1] gi|297150149|gb|EFH30446.1| NAD-dependent DNA ligase LigA [Lactobacillus jensenii JV-V16] Length = 669 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 AI R+ + + L I+ +G L++Q F + I ++S L +I+ I + IA Sbjct: 496 AIDNSRQNSVELLLNGL-GIDHVGAKAALLIVQRFKNLNKIMQASVSDLTAIDTIGETIA 554 Query: 601 CKIYNHF 607 I +F Sbjct: 555 ESITTYF 561 >gi|22298400|ref|NP_681647.1| NAD-dependent DNA ligase LigA [Thermosynechococcus elongatus BP-1] gi|81743454|sp|Q8DKK2|DNLJ_THEEB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|22294579|dbj|BAC08409.1| DNA ligase [Thermosynechococcus elongatus BP-1] Length = 689 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 26/50 (52%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I +G + +LL F +V+ ++ ++ L ++GI ++IA + F Sbjct: 533 GIRHVGSVNAQLLADRFKSVEELATATVADLCGVDGIGEEIAQAVQEWFQ 582 >gi|238926841|ref|ZP_04658601.1| exodeoxyribonuclease V alpha subunit [Selenomonas flueggei ATCC 43531] gi|238885373|gb|EEQ49011.1| exodeoxyribonuclease V alpha subunit [Selenomonas flueggei ATCC 43531] Length = 723 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%) Query: 560 INGIGPLRKRLLLQSFGT--VKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I GIGP R +++ FGT +K+I +P L + GI K A KI +H+ Sbjct: 102 IEGIGPATARRIVERFGTDTLKVIES-TPRRLTEVTGIGPKTAEKITASYHR 152 >gi|297582420|ref|YP_003698200.1| DNA integrity scanning, DisA, linker region [Bacillus selenitireducens MLS10] gi|297140877|gb|ADH97634.1| DNA integrity scanning, DisA, linker region [Bacillus selenitireducens MLS10] Length = 360 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 27/52 (51%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L +I I P R L++ FGT+ + R+ + L +EGI + A KI + Sbjct: 296 ILRKIPRIPPKVIRNLVRQFGTLSEMIRADIQELDEVEGIGEARANKIQDGL 347 >gi|195583504|ref|XP_002081557.1| GD11080 [Drosophila simulans] gi|194193566|gb|EDX07142.1| GD11080 [Drosophila simulans] Length = 259 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 24/54 (44%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L I + LL +FG + I +S E L+ + G+ + A K+Y + Sbjct: 201 ALTNIKPVNKTDAAALLHTFGNLGNIINASEERLSQVMGLGPRKAKKLYKTLQE 254 >gi|195334481|ref|XP_002033906.1| GM21575 [Drosophila sechellia] gi|194125876|gb|EDW47919.1| GM21575 [Drosophila sechellia] Length = 259 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 24/54 (44%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L I + LL +FG + I +S E L+ + G+ + A K+Y + Sbjct: 201 ALTNIKPVNKTDAAALLHTFGNLGNIINASEERLSQVMGLGPRKAKKLYKTLQE 254 >gi|115496970|ref|NP_001069853.1| DNA excision repair protein ERCC-1 [Bos taurus] gi|122145868|sp|Q1LZ75|ERCC1_BOVIN RecName: Full=DNA excision repair protein ERCC-1 gi|94534838|gb|AAI16164.1| Excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence) [Bos taurus] gi|296477517|gb|DAA19632.1| DNA excision repair protein ERCC-1 [Bos taurus] Length = 294 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 26/41 (63%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + LL +FG+++ + +S E L+ G+ + A ++++ FH+ Sbjct: 247 QTLLTTFGSLEQLIAASREDLSLCPGLGPQKARRLFDVFHE 287 >gi|17137732|ref|NP_477468.1| Ercc1 [Drosophila melanogaster] gi|5020078|gb|AAD38010.1|AF146797_1 nucleotide excision repair protein ERCC1 [Drosophila melanogaster] gi|7303131|gb|AAF58196.1| Ercc1 [Drosophila melanogaster] Length = 259 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 24/54 (44%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L I + LL +FG + I +S E L+ + G+ + A K+Y + Sbjct: 201 ALTNIKPVNKTDAAALLHTFGNLGNIINASEERLSQVMGLGPRKAKKLYKTLQE 254 >gi|283778858|ref|YP_003369613.1| DNA protecting protein DprA [Pirellula staleyi DSM 6068] gi|283437311|gb|ADB15753.1| DNA protecting protein DprA [Pirellula staleyi DSM 6068] Length = 401 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 25/48 (52%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 L ++G+GP + L+ FG+ + + +S L + G+ K+ +I Sbjct: 21 RLAMLDGVGPRTRFNLVDRFGSAQEVFTASQHELRMVTGVGPKVVQQI 68 >gi|311032954|ref|ZP_07711044.1| GIY-YIG catalytic domain protein [Bacillus sp. m3-13] Length = 124 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 4/77 (5%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G+Y +I +L+VGKA L++RIK + N + ++ I + +E Sbjct: 45 GIYMFFNINEDLLFVGKARKLRQRIKKHFEDNVSPIKNHR--DEVYRIDVCIVEDPMERE 102 Query: 71 LLEANMI-KRLKPRFNI 86 + E I L+ ++N+ Sbjct: 103 IYE-TYIANTLQAKYNV 118 >gi|116513594|ref|YP_812500.1| NAD-dependent DNA ligase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275636|sp|Q04BW0|DNLJ_LACDB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116092909|gb|ABJ58062.1| NAD-dependent DNA ligase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 671 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 RK + L I+ +G +L+ + F + I+ +S + L +I+ I IA + + Sbjct: 500 RKNSVELVLFGLGIDNVGGKAAQLIARKFKNMSKIASASVQELTAIDTIGMTIAESLTTY 559 Query: 607 FHKNTS 612 F + + Sbjct: 560 FQQEEA 565 >gi|222445132|ref|ZP_03607647.1| hypothetical protein METSMIALI_00751 [Methanobrevibacter smithii DSM 2375] gi|222434697|gb|EEE41862.1| hypothetical protein METSMIALI_00751 [Methanobrevibacter smithii DSM 2375] Length = 693 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 +G R RLL+++FG +S +S + L +EGI K+A K+ Sbjct: 648 LGRKRARLLMKTFG--DNLSEASEKELQKVEGIGSKLAGKVK 687 >gi|283457254|ref|YP_003361824.1| putative nucleic-acid-binding protein [Rothia mucilaginosa DY-18] gi|283133239|dbj|BAI64004.1| predicted nucleic-acid-binding protein [Rothia mucilaginosa DY-18] Length = 358 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 24/51 (47%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L I I L++ FG+++ + +S E L +++G+ + A + Sbjct: 296 LAGIPSIPNAISERLVERFGSLQALMAASLEDLRAVDGVGEARARTVREQL 346 >gi|255326108|ref|ZP_05367195.1| DNA-binding protein [Rothia mucilaginosa ATCC 25296] gi|255296819|gb|EET76149.1| DNA-binding protein [Rothia mucilaginosa ATCC 25296] Length = 358 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 24/51 (47%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L I I L++ FG+++ + +S E L +++G+ + A + Sbjct: 296 LAGIPSIPNAISERLVERFGSLQALMAASLEDLRAVDGVGEARARTVREQL 346 >gi|238756322|ref|ZP_04617636.1| DNA ligase [Yersinia ruckeri ATCC 29473] gi|238705475|gb|EEP97878.1| DNA ligase [Yersinia ruckeri ATCC 29473] Length = 674 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 8/52 (15%), Positives = 21/52 (40%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L F T++ + + E L ++ + + +A + N + + Sbjct: 520 VGEATAAHLAAHFRTLENLRAADVEALKAVPDVGEVVAKHVLNFLSEEHNQQ 571 >gi|152974127|ref|YP_001373644.1| NAD-dependent DNA ligase LigA [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|190359228|sp|A7GKJ1|DNLJ_BACCN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|152022879|gb|ABS20649.1| DNA ligase, NAD-dependent [Bacillus cytotoxicus NVH 391-98] Length = 669 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R L + F T+ + ++ E L +I I +K+A I +F Sbjct: 512 GIRHVGAKAARTLAEHFETMDNLVKAGEEELKAINEIGEKMAQSIVTYFDNED 564 >gi|325684644|gb|EGD26799.1| NAD-dependent DNA ligase LigA [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 671 Score = 51.3 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 RK + L I+ +G +L+ Q F + I+ +S + L +I+ I IA + + Sbjct: 500 RKNSVELVLFGLGIDNVGGKAAQLIAQKFKNMSKIASASVQELTAIDTIGMTIAESLTAY 559 Query: 607 FHKNTS 612 F + + Sbjct: 560 FQQEEA 565 >gi|94263030|ref|ZP_01286849.1| DNA ligase (NAD+) [delta proteobacterium MLMS-1] gi|93456573|gb|EAT06681.1| DNA ligase (NAD+) [delta proteobacterium MLMS-1] Length = 678 Score = 51.3 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%) Query: 547 KRRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 RR++ L I IG + +LL + FGT++ + + E IEGI + A + Sbjct: 510 NRRRRVELGRLLAALGIRHIGEVTAQLLARRFGTLEGLLAAGEEDFLDIEGIGPQAAAAL 569 Query: 604 YNHF 607 +F Sbjct: 570 VTYF 573 >gi|294815250|ref|ZP_06773893.1| DNA ligase [Streptomyces clavuligerus ATCC 27064] gi|326443605|ref|ZP_08218339.1| NAD-dependent DNA ligase LigA [Streptomyces clavuligerus ATCC 27064] gi|294327849|gb|EFG09492.1| DNA ligase [Streptomyces clavuligerus ATCC 27064] Length = 767 Score = 51.3 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 26/52 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +GP+ L + F +V+ I ++ E LA+ EG+ IA + F + Sbjct: 596 SIRHVGPVAAEALAREFRSVQRIQEATEEELAATEGVGAIIAASLKQWFAEE 647 >gi|255542562|ref|XP_002512344.1| excision repair cross-complementing 1 ercc1, putative [Ricinus communis] gi|223548305|gb|EEF49796.1| excision repair cross-complementing 1 ercc1, putative [Ricinus communis] Length = 392 Score = 51.3 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 21/35 (60%) Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 FG++ I +S E LA GI ++ ++Y+ FH+ Sbjct: 259 FGSLSNIMDASMEDLARCPGIGERKVKRLYDTFHE 293 >gi|254390812|ref|ZP_05006024.1| DNA ligase [Streptomyces clavuligerus ATCC 27064] gi|197704511|gb|EDY50323.1| DNA ligase [Streptomyces clavuligerus ATCC 27064] Length = 730 Score = 51.3 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 26/52 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +GP+ L + F +V+ I ++ E LA+ EG+ IA + F + Sbjct: 559 SIRHVGPVAAEALAREFRSVQRIQEATEEELAATEGVGAIIAASLKQWFAEE 610 >gi|213964541|ref|ZP_03392741.1| DNA ligase, NAD-dependent [Corynebacterium amycolatum SK46] gi|213952734|gb|EEB64116.1| DNA ligase, NAD-dependent [Corynebacterium amycolatum SK46] Length = 703 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 28/49 (57%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L Q FG+++ + +S E +++I+GI + I + + F Sbjct: 548 SIRHVGPTVARTLAQKFGSMEALRAASREEISAIDGIGEIIGDSVADWF 596 >gi|220935192|ref|YP_002514091.1| DNA ligase (NAD(+)) [Thioalkalivibrio sp. HL-EbGR7] gi|254781444|sp|B8GTL0|DNLJ_THISH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|219996502|gb|ACL73104.1| DNA ligase (NAD(+)) [Thioalkalivibrio sp. HL-EbGR7] Length = 675 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 6/65 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ ++ L I +G R L FG + + + E L + + +A + Sbjct: 506 KSKHTQLARFIFALGIREVGEATARALAIHFGGLDALMAADEEALMQVPDVGPVVAHHVA 565 Query: 605 NHFHK 609 F + Sbjct: 566 TFFQQ 570 >gi|46143448|ref|ZP_00135242.2| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II) [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208768|ref|YP_001053993.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae L20] gi|166215385|sp|A3N1V2|DNLJ_ACTP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|126097560|gb|ABN74388.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 683 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 22/47 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G + L F + I ++ E L +++ + + +A +I + + Sbjct: 533 VGEATAQNLANHFHNLAAIRTATFEQLQAVQDVGEVVANRIVRFWQE 579 >gi|218260659|ref|ZP_03475861.1| hypothetical protein PRABACTJOHN_01525 [Parabacteroides johnsonii DSM 18315] gi|218224427|gb|EEC97077.1| hypothetical protein PRABACTJOHN_01525 [Parabacteroides johnsonii DSM 18315] Length = 606 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 26/45 (57%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + L+ +F ++ + ++S E L +++ I ++IA I +F Sbjct: 455 VGETVAKRLVAAFHSMDQLEQASFEDLIAVDEIGERIARSIIAYF 499 >gi|16768600|gb|AAL28519.1| GM10122p [Drosophila melanogaster] Length = 244 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 24/54 (44%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L I + LL +FG + I +S E L+ + G+ + A K+Y + Sbjct: 186 ALTNIKPVNKTDAAALLHTFGNLGNIINASEERLSQVMGLGPRKAKKLYKTLQE 239 >gi|21226559|ref|NP_632481.1| DNA repair and recombination protein RadA [Methanosarcina mazei Go1] gi|20904832|gb|AAM30153.1| recombination/repair protein RadA [Methanosarcina mazei Go1] Length = 367 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 L+E+ G+GP L ++ F T++ ++ +SP LA+ I + A KI N + Sbjct: 47 ALEELPGVGPATAEKLKEAGFNTIEAVAVASPSELATTAEIGESTAAKIINAARQAAD 104 >gi|34395788|sp|Q8PZN5|RADA_METMA RecName: Full=DNA repair and recombination protein radA Length = 325 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 L+E+ G+GP L ++ F T++ ++ +SP LA+ I + A KI N + Sbjct: 5 ALEELPGVGPATAEKLKEAGFNTIEAVAVASPSELATTAEIGESTAAKIINAARQAAD 62 >gi|328954307|ref|YP_004371641.1| DNA protecting protein DprA [Desulfobacca acetoxidans DSM 11109] gi|328454631|gb|AEB10460.1| DNA protecting protein DprA [Desulfobacca acetoxidans DSM 11109] Length = 366 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 26/51 (50%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 L I G+G + LL+ F + ++ ++ E L ++G+S IA I + Sbjct: 12 ALRSIPGLGVVIFHRLLKRFTSPDLVFQAPYEELIQVKGVSPAIAQAICDF 62 >gi|308071479|ref|YP_003873084.1| hypothetical protein PPE_04787 [Paenibacillus polymyxa E681] gi|305860758|gb|ADM72546.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 118 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 2/79 (2%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 + G++ + +L+VGKA L+ RIK + N + +++ I + V Sbjct: 36 DKAGIFMFYNAQEELLFVGKARKLRPRIKKHFEDNVSPIKDKR--NEVAIIEVCIVEDAV 93 Query: 68 EALLLEANMIKRLKPRFNI 86 E + E +I K ++N+ Sbjct: 94 EREIYETYIINTQKAKYNV 112 >gi|295702476|ref|YP_003595551.1| DNA ligase, NAD-dependent [Bacillus megaterium DSM 319] gi|294800135|gb|ADF37201.1| DNA ligase, NAD-dependent [Bacillus megaterium DSM 319] Length = 668 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 26/53 (49%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G + L Q F T+ +++++ + L +I I K+A I +F + Sbjct: 511 GIRHVGAKAAKTLAQHFETIDKLTKATYDELVAINEIGAKMADAIVAYFTQEE 563 >gi|86142854|ref|ZP_01061293.1| DNA ligase [Leeuwenhoekiella blandensis MED217] gi|85830886|gb|EAQ49344.1| DNA ligase [Leeuwenhoekiella blandensis MED217] Length = 663 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 27/51 (52%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 +G R L + F T+ ++ +S ETL +++ I +IA + + F + + Sbjct: 514 VGETVARKLAKQFKTIDALAEASEETLVAVDEIGARIAQSVVSFFSEEANQ 564 >gi|239815926|ref|YP_002944836.1| DNA ligase, NAD-dependent [Variovorax paradoxus S110] gi|239802503|gb|ACS19570.1| DNA ligase, NAD-dependent [Variovorax paradoxus S110] Length = 694 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 20/49 (40%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G + L + FG + I +S E L + + +A + F Sbjct: 537 GIRHVGESTAKDLSKHFGKLDAIMDASEEQLLEVNDVGPVVAQSLRTFF 585 >gi|149722206|ref|XP_001502644.1| PREDICTED: similar to DNA excision repair protein ERCC-1 [Equus caballus] Length = 291 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 25/41 (60%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + LL +FG+++ + +S E LA G+ + A ++++ H+ Sbjct: 244 QTLLATFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 284 >gi|108800777|ref|YP_640974.1| excinuclease ABC subunit C [Mycobacterium sp. MCS] gi|119869916|ref|YP_939868.1| excinuclease ABC subunit C [Mycobacterium sp. KMS] gi|119870333|ref|YP_940285.1| excinuclease ABC subunit C [Mycobacterium sp. KMS] gi|108771196|gb|ABG09918.1| Excinuclease ABC, C subunit-like protein [Mycobacterium sp. MCS] gi|119696005|gb|ABL93078.1| Excinuclease ABC, C subunit domain protein [Mycobacterium sp. KMS] gi|119696422|gb|ABL93495.1| Excinuclease ABC, C subunit domain protein [Mycobacterium sp. KMS] Length = 180 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 9/76 (11%) Query: 12 VYQMLDIA-GRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 VY + LYVG++ N+ R+ + + + + ++ TE A Sbjct: 96 VYLLWGEDPNTPLYVGQSTNILSRL-----GAHMGDKTKR--ALVKRVQLIRCSTEKLAD 148 Query: 71 LLEANMIKRLKPRFNI 86 E +I+ +P N+ Sbjct: 149 T-EWRLIQHYQPPLNV 163 >gi|73669826|ref|YP_305841.1| DNA repair and recombination protein RadA [Methanosarcina barkeri str. Fusaro] gi|121695787|sp|Q46A31|RADA_METBF RecName: Full=DNA repair and recombination protein radA gi|72396988|gb|AAZ71261.1| DNA repair protein [Methanosarcina barkeri str. Fusaro] Length = 325 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 L+E+ G+GP L ++ F T++ ++ +SP LA+ I + A KI N + Sbjct: 6 LEELPGVGPATAEKLKEAGFNTIEAVAVASPSELATTAEIGESTAAKIINAARQAAD 62 >gi|242399963|ref|YP_002995388.1| DNA repair and recombination protein radA [Thermococcus sibiricus MM 739] gi|242266357|gb|ACS91039.1| DNA repair and recombination protein radA [Thermococcus sibiricus MM 739] Length = 526 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Query: 550 KKAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 KK S +++ G+GP L ++ + +++ I+ +SP L + G+S+ A KI Sbjct: 40 KKEIKSI-EDLPGVGPATAEKLREAGYDSLEAIAVASPLELKELAGVSEGAALKIIQAAR 98 Query: 609 KNTS 612 + + Sbjct: 99 EAAN 102 >gi|57234651|ref|YP_181315.1| RadC family DNA repair protein [Dehalococcoides ethenogenes 195] gi|57225099|gb|AAW40156.1| DNA repair protein, RadC family [Dehalococcoides ethenogenes 195] Length = 222 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 20/39 (51%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + LL FG I+ +S E L ++GI AC++ F Sbjct: 46 QRLLTHFGGPSGIASASVEELLKLKGIGLAKACQLKAAF 84 >gi|226533697|ref|NP_001152781.1| DNA excision repair protein ERCC-1 [Sus scrofa] gi|226354716|gb|ACO50967.1| excision repair cross-complementing rodent repair deficiency complementation group 1 [Sus scrofa] Length = 294 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 26/41 (63%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + LL +FG+++ ++ +S E LA G+ + A ++++ H+ Sbjct: 247 QTLLTTFGSLEQLTAASREDLALCPGLGPQKARRLFDVLHE 287 >gi|262375659|ref|ZP_06068891.1| DNA ligase, NAD-dependent [Acinetobacter lwoffii SH145] gi|262309262|gb|EEY90393.1| DNA ligase, NAD-dependent [Acinetobacter lwoffii SH145] Length = 679 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 21/50 (42%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I G+G R+L +F T+ + ++ E L + A I + F Sbjct: 522 GIRGVGETTARMLANTFQTLDALRQADLEALKKTPDVGDITAEWILDFFQ 571 >gi|119961355|ref|YP_947208.1| DNA ligase, NAD-dependent [Arthrobacter aurescens TC1] gi|166215391|sp|A1R4P6|DNLJ_ARTAT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|119948214|gb|ABM07125.1| DNA ligase, NAD-dependent [Arthrobacter aurescens TC1] Length = 768 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 25/49 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L +FG++ I ++ E +A ++G+ IA + F Sbjct: 587 SIRHVGPTASRALATAFGSMDAIRNATEEQMAHVDGVGPTIAVALKEWF 635 >gi|329924646|ref|ZP_08279661.1| GIY-YIG catalytic domain protein [Paenibacillus sp. HGF5] gi|328940480|gb|EGG36802.1| GIY-YIG catalytic domain protein [Paenibacillus sp. HGF5] Length = 118 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G++ + G +L+VGKA L+ RIK + + + +++ +I V V Sbjct: 39 GIFMFYNSKGELLFVGKARKLRPRIKKHFEDSVSPIKEHR--NEVASIEVCVIEDAVHRE 96 Query: 71 LLEANMIKRLKPRFNI 86 + E +I K ++N+ Sbjct: 97 IYETYIINEFKAKYNV 112 >gi|295695947|ref|YP_003589185.1| hypothetical protein Btus_1318 [Bacillus tusciae DSM 2912] gi|295411549|gb|ADG06041.1| conserved hypothetical protein [Bacillus tusciae DSM 2912] Length = 401 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%) Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEG 594 PL I G+GP R+ LL++FG+ + ++ R+S E LA + G Sbjct: 332 PLSFIPGLGPKRRSALLKAFGSEMGVLHRASREALAEVVG 371 >gi|242033937|ref|XP_002464363.1| hypothetical protein SORBIDRAFT_01g016980 [Sorghum bicolor] gi|241918217|gb|EER91361.1| hypothetical protein SORBIDRAFT_01g016980 [Sorghum bicolor] Length = 397 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 21/35 (60%) Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 FG++ I +S E LA GI ++ ++Y+ FH+ Sbjct: 270 FGSLSQIMNASMEELARCPGIGERKVKRLYDTFHE 304 >gi|218295448|ref|ZP_03496261.1| PHP domain protein [Thermus aquaticus Y51MC23] gi|218244080|gb|EED10606.1| PHP domain protein [Thermus aquaticus Y51MC23] Length = 575 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 7/69 (10%) Query: 545 HRKRRKKAAYSPLD--EINGIGPLRKRLLLQSFG--TVKMISRSSPE--TLASIEGISKK 598 H + K L+ E+ G+GP R L ++ G +++ + + E L ++G K Sbjct: 81 HEELSGKVPRGVLEVMEVPGVGPKTARGLYEALGIDSLEKLKEA-LERGDLLRLKGFGAK 139 Query: 599 IACKIYNHF 607 A +I Sbjct: 140 KAERIKEGL 148 >gi|195486112|ref|XP_002091366.1| GE13614 [Drosophila yakuba] gi|194177467|gb|EDW91078.1| GE13614 [Drosophila yakuba] Length = 259 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 24/54 (44%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L I + LL +FG + I +S E L+ + G+ + A K+Y + Sbjct: 201 ALTNIKPVNKTDAAALLHTFGNLGNIINASEERLSQVMGLGPRKAKKLYKTLQE 254 >gi|109898096|ref|YP_661351.1| DNA ligase, NAD-dependent [Pseudoalteromonas atlantica T6c] gi|122972028|sp|Q15UZ1|DNLJ_PSEA6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|109700377|gb|ABG40297.1| DNA ligase, NAD-dependent [Pseudoalteromonas atlantica T6c] Length = 677 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 6/66 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I +G + L Q F T++ I ++ + L ++ + +A ++ Sbjct: 507 KSKKTTLAKFLYSLGIREVGEATAQNLAQHFLTLEAIEQADLDALQAVSDVGVIVAQHVF 566 Query: 605 NHFHKN 610 N F + Sbjct: 567 NFFKEE 572 >gi|323490410|ref|ZP_08095622.1| DNA ligase [Planococcus donghaensis MPA1U2] gi|323395909|gb|EGA88743.1| DNA ligase [Planococcus donghaensis MPA1U2] Length = 668 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 R + L I +G R+L + FGT++ + ++ E L + I K+A I + Sbjct: 500 RSNSMEKLLFGLGIRHVGERGARILSEHFGTLEQLIAATKEELIEVHEIGDKMADSIVMY 559 Query: 607 FHKNT 611 F Sbjct: 560 FDNEE 564 >gi|300933643|ref|ZP_07148899.1| NAD-dependent DNA ligase LigA [Corynebacterium resistens DSM 45100] Length = 680 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%) Query: 564 GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF----HKN 610 GP + L + ++ I +S E +++IEG+ + IA I + F H+N Sbjct: 524 GPTAAKALAAHYHSIAAIQGASVEEMSTIEGVGEIIAQSIADWFTVDWHRN 574 >gi|295101804|emb|CBK99349.1| DNA repair protein radc [Faecalibacterium prausnitzii L2-6] Length = 244 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 9/35 (25%), Positives = 17/35 (48%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 LL+ FG+ + +S E L + G+ A ++ Sbjct: 52 ALLERFGSFAGVLEASEEELCRVPGVGPASARMLH 86 >gi|227499502|ref|ZP_03929609.1| DNA ligase (NAD(+)) [Anaerococcus tetradius ATCC 35098] gi|227218381|gb|EEI83632.1| DNA ligase (NAD(+)) [Anaerococcus tetradius ATCC 35098] Length = 666 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 18/49 (36%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G R L F + + S + L I+ I + A I F Sbjct: 510 GIPNVGERTSRDLANKFKSFDKLRASKVDELTDIDDIGEITAENIVEFF 558 >gi|34809805|pdb|1PZN|A Chain A, Rad51 (Rada) gi|34809806|pdb|1PZN|B Chain B, Rad51 (Rada) gi|34809807|pdb|1PZN|C Chain C, Rad51 (Rada) gi|34809808|pdb|1PZN|D Chain D, Rad51 (Rada) gi|34809809|pdb|1PZN|E Chain E, Rad51 (Rada) gi|34809810|pdb|1PZN|F Chain F, Rad51 (Rada) gi|34809811|pdb|1PZN|G Chain G, Rad51 (Rada) Length = 349 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 ++++ G+GP L ++ + T++ I+ +SP L + GIS+ A KI K + Sbjct: 36 SIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKAAN 93 >gi|18978298|ref|NP_579655.1| DNA repair and recombination protein RadA [Pyrococcus furiosus DSM 3638] gi|13878669|sp|O74036|RADA_PYRFU RecName: Full=DNA repair and recombination protein radA gi|3560537|gb|AAC34998.1| recombinase [Pyrococcus furiosus DSM 3638] gi|18894122|gb|AAL82050.1| recombinase, radA [Pyrococcus furiosus DSM 3638] Length = 349 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 ++++ G+GP L ++ + T++ I+ +SP L + GIS+ A KI K + Sbjct: 36 SIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKAAN 93 >gi|332257177|ref|XP_003277689.1| PREDICTED: DNA excision repair protein ERCC-1-like [Nomascus leucogenys] Length = 245 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 25/41 (60%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + LL +FG+++ + +S E LA G+ + A ++++ H+ Sbjct: 199 QTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 239 >gi|297705160|ref|XP_002829451.1| PREDICTED: DNA excision repair protein ERCC-1-like isoform 1 [Pongo abelii] Length = 297 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 25/41 (60%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + LL +FG+++ + +S E LA G+ + A ++++ H+ Sbjct: 251 QTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 291 >gi|296234108|ref|XP_002762336.1| PREDICTED: DNA excision repair protein ERCC-1-like [Callithrix jacchus] Length = 262 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 25/41 (60%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + LL +FG+++ + +S E LA G+ + A ++++ H+ Sbjct: 215 QTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 255 >gi|297705162|ref|XP_002829452.1| PREDICTED: DNA excision repair protein ERCC-1-like isoform 2 [Pongo abelii] gi|193787266|dbj|BAG52472.1| unnamed protein product [Homo sapiens] Length = 225 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 25/41 (60%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + LL +FG+++ + +S E LA G+ + A ++++ H+ Sbjct: 179 QTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 219 >gi|194882957|ref|XP_001975576.1| GG20484 [Drosophila erecta] gi|190658763|gb|EDV55976.1| GG20484 [Drosophila erecta] Length = 259 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 24/54 (44%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L I + LL +FG + I +S E L+ + G+ + A K+Y + Sbjct: 201 ALTNIKPVNKTDAAALLHTFGNLGNIINASEERLSQVMGLGPRKAKKLYKTLQE 254 >gi|189054601|dbj|BAG37398.1| unnamed protein product [Homo sapiens] Length = 297 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 25/41 (60%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + LL +FG+++ + +S E LA G+ + A ++++ H+ Sbjct: 251 QTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 291 >gi|38112299|gb|AAR11239.1| excision repair protein [Pan troglodytes] Length = 251 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 25/41 (60%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + LL +FG+++ + +S E LA G+ + A ++++ H+ Sbjct: 208 QTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 248 >gi|61357240|gb|AAX41357.1| excision repair cross-complementing rodent repair deficiency complementation group 1 [synthetic construct] Length = 297 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 25/41 (60%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + LL +FG+++ + +S E LA G+ + A ++++ H+ Sbjct: 251 QTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 291 >gi|60655939|gb|AAX32533.1| excision repair cross-complementing rodent repair deficiency complementation group 1 [synthetic construct] Length = 297 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 25/41 (60%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + LL +FG+++ + +S E LA G+ + A ++++ H+ Sbjct: 251 QTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 291 >gi|54696472|gb|AAV38608.1| excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence) [synthetic construct] gi|60652851|gb|AAX29120.1| excision repair cross-complementing rodent repair deficiency complementation group 1 [synthetic construct] gi|60830454|gb|AAX36930.1| excision repair cross-complementing rodent repair deficiency complementation group 1 [synthetic construct] gi|61365104|gb|AAX42654.1| excision repair cross-complementing rodent repair deficiency complementation group 1 [synthetic construct] gi|61367243|gb|AAX42971.1| excision repair cross-complementing rodent repair deficiency complementation group 1 [synthetic construct] Length = 298 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 25/41 (60%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + LL +FG+++ + +S E LA G+ + A ++++ H+ Sbjct: 251 QTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 291 >gi|85544011|pdb|1Z00|A Chain A, Solution Structure Of The C-Terminal Domain Of Ercc1 Complexed With The C-Terminal Domain Of Xpf Length = 89 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 25/41 (60%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + LL +FG+++ + +S E LA G+ + A ++++ H+ Sbjct: 33 QTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 73 >gi|73536055|pdb|2A1J|B Chain B, Crystal Structure Of The Complex Between The C-Terminal Domains Of Human Xpf And Ercc1 Length = 91 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 25/41 (60%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + LL +FG+++ + +S E LA G+ + A ++++ H+ Sbjct: 46 QTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 86 >gi|4503599|ref|NP_001974.1| DNA excision repair protein ERCC-1 isoform 2 [Homo sapiens] gi|302632548|ref|NP_001181860.1| DNA excision repair protein ERCC-1 [Pan troglodytes] gi|119538|sp|P07992|ERCC1_HUMAN RecName: Full=DNA excision repair protein ERCC-1 gi|21105797|gb|AAM34796.1|AF512555_1 excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence) [Homo sapiens] gi|182174|gb|AAA52394.1| excision repair protein [Homo sapiens] gi|182177|gb|AAA35810.1| excision repair protein [Homo sapiens] gi|2583146|gb|AAC16253.1| excision repair protein [Homo sapiens] gi|14286266|gb|AAH08930.1| Excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence) [Homo sapiens] gi|54696474|gb|AAV38609.1| excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence) [Homo sapiens] gi|60818953|gb|AAX36483.1| excision repair cross-complementing rodent repair deficiency complementation group 1 [synthetic construct] gi|61354943|gb|AAX41079.1| excision repair cross-complementing rodent repair deficiency complementation group 1 [synthetic construct] gi|61357235|gb|AAX41356.1| excision repair cross-complementing rodent repair deficiency complementation group 1 [synthetic construct] gi|61363050|gb|AAX42326.1| excision repair cross-complementing rodent repair deficiency complementation group 1 [synthetic construct] gi|119577752|gb|EAW57348.1| excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence), isoform CRA_a [Homo sapiens] gi|119577754|gb|EAW57350.1| excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence), isoform CRA_a [Homo sapiens] gi|123990970|gb|ABM83928.1| excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence) [synthetic construct] gi|123999343|gb|ABM87247.1| excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence) [synthetic construct] gi|225908|prf||1403276A DNA repair gene Length = 297 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 25/41 (60%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + LL +FG+++ + +S E LA G+ + A ++++ H+ Sbjct: 251 QTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 291 >gi|188533249|ref|YP_001907046.1| NAD-dependent DNA ligase LigA [Erwinia tasmaniensis Et1/99] gi|254781330|sp|B2VE40|DNLJ_ERWT9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|188028291|emb|CAO96149.1| DNA ligase [Erwinia tasmaniensis Et1/99] Length = 670 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 26/54 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I+ +G L FGT++ + + +TL ++ + K +A + N + ++ Sbjct: 514 GISEVGEATAANLAAHFGTLEALMAADIDTLITVPDVGKVVASHVRNFLDEESN 567 >gi|170781460|ref|YP_001709792.1| NAD-dependent DNA ligase LigA [Clavibacter michiganensis subsp. sepedonicus] gi|190359244|sp|B0RGA7|DNLJ_CLAMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|169156028|emb|CAQ01163.1| DNA ligase [Clavibacter michiganensis subsp. sepedonicus] Length = 847 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 28/49 (57%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP+ R L FG++ +I +S E LA+++G+ IA + + F Sbjct: 606 SIRHVGPVAARALAGWFGSLDVIRAASREELAAVDGVGGIIADALLDWF 654 >gi|90410985|ref|ZP_01218999.1| DNA ligase [Photobacterium profundum 3TCK] gi|90328198|gb|EAS44509.1| DNA ligase [Photobacterium profundum 3TCK] Length = 697 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 22/47 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L F T++ I+ +S E L + + + +A + N F + Sbjct: 547 VGEATAANLANHFETLEAITAASKEQLLVVPDVGEVVANNLLNFFRE 593 >gi|54308062|ref|YP_129082.1| NAD-dependent DNA ligase LigA [Photobacterium profundum SS9] gi|81615410|sp|Q6LTU5|DNLJ_PHOPR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|46912488|emb|CAG19280.1| putative NAD-dependent DNA ligase [Photobacterium profundum SS9] Length = 676 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 22/47 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L F T++ I+ +S E L + + + +A + N F + Sbjct: 526 VGEATAANLANHFETLEAITAASKEQLLVVPDVGEVVANNLLNFFRE 572 >gi|171184588|ref|YP_001793507.1| DEAD/DEAH box helicase domain-containing protein [Thermoproteus neutrophilus V24Sta] gi|170933800|gb|ACB39061.1| DEAD/DEAH box helicase domain protein [Thermoproteus neutrophilus V24Sta] Length = 729 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%) Query: 562 GIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN 605 G+G +R R L FG TVK ++++S +AS+ G +++A I Sbjct: 676 GVGRVRARALYN-FGYRTVKDLAKASVREIASLPGFGERLAESIIE 720 >gi|89075460|ref|ZP_01161871.1| DNA ligase [Photobacterium sp. SKA34] gi|89048732|gb|EAR54303.1| DNA ligase [Photobacterium sp. SKA34] Length = 670 Score = 50.9 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 23/48 (47%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +G L F T++ IS+++ + L + + +A I+N F + Sbjct: 521 VGEATAANLANYFETLESISQATKDQLIEVPDVGGIVAAHIFNFFREE 568 >gi|317507336|ref|ZP_07965075.1| DNA ligase [Segniliparus rugosus ATCC BAA-974] gi|316254381|gb|EFV13712.1| DNA ligase [Segniliparus rugosus ATCC BAA-974] Length = 712 Score = 50.9 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 23/49 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG+V + + E LA ++G+ IA + F Sbjct: 535 SIRHVGPTAARALATRFGSVDAVFGADQEALAEVDGVGPTIAASVREWF 583 >gi|300173629|ref|YP_003772795.1| DNA ligase, NAD-dependent [Leuconostoc gasicomitatum LMG 18811] gi|299888008|emb|CBL91976.1| DNA ligase, NAD-dependent [Leuconostoc gasicomitatum LMG 18811] Length = 681 Score = 50.9 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 26/45 (57%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G R+L F ++ I+ ++ E +A+I+GI +IA I +F Sbjct: 526 VGAKAARVLAGKFKNLQSIATATTEDIANIDGIGDRIARSIVQYF 570 >gi|254371060|ref|ZP_04987062.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|151569300|gb|EDN34954.1| hypothetical protein FTBG_00816 [Francisella tularensis subsp. tularensis FSC033] Length = 643 Score = 50.9 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I IG + L FG+++ + E L I I + +A I + +H + Sbjct: 491 GIKDIGEVSSDALANHFGSLESFRDAKFEELIEINDIGEIMANNIVSFWHDS 542 >gi|294635487|ref|ZP_06713972.1| DNA ligase, NAD-dependent [Edwardsiella tarda ATCC 23685] gi|291091145|gb|EFE23706.1| DNA ligase, NAD-dependent [Edwardsiella tarda ATCC 23685] Length = 675 Score = 50.9 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 21/47 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L FG++ + + E+L S+ + + +A I + + Sbjct: 521 VGEATAANLASHFGSLSALRGADLESLKSVPEVGEVVARHIRHFLSE 567 >gi|296331752|ref|ZP_06874219.1| putative excinuclease [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675858|ref|YP_003867530.1| putative excinuclease [Bacillus subtilis subsp. spizizenii str. W23] gi|296151077|gb|EFG91959.1| putative excinuclease [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414102|gb|ADM39221.1| putative excinuclease [Bacillus subtilis subsp. spizizenii str. W23] Length = 124 Score = 50.9 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G++ +I +L+VGKA L++RIK + + ++ I V +E Sbjct: 45 GIFMFYNIHDELLFVGKARKLRQRIKKHFEDTVSPIKHHR--DEVYKIEVCVVEDPMERE 102 Query: 71 LLEANMIKRLKPRFNI 86 + E +I ++N+ Sbjct: 103 IYETYIINTQHSKYNV 118 >gi|254383201|ref|ZP_04998554.1| DNA ligase [Streptomyces sp. Mg1] gi|194342099|gb|EDX23065.1| DNA ligase [Streptomyces sp. Mg1] Length = 736 Score = 50.9 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP+ L + F +++ I +++ E LA+ +G+ IA + F Sbjct: 563 SIRHVGPVAAEALAREFRSIERIEQATEEELAATDGVGAIIAASLKEWF 611 >gi|208779663|ref|ZP_03247008.1| DNA ligase, NAD-dependent [Francisella novicida FTG] gi|208744624|gb|EDZ90923.1| DNA ligase, NAD-dependent [Francisella novicida FTG] Length = 678 Score = 50.9 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I IG + L FG+++ + E L I I + +A I + +H + Sbjct: 526 GIKDIGEVSSDALANHFGSLESFRDAKFEELIEINDIGEIMANNIVSFWHDS 577 >gi|255660255|ref|ZP_05405664.1| DNA ligase, NAD-dependent [Mycoplasma genitalium G37] Length = 658 Score = 50.9 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 24/50 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I +G + + L F +K + +S E L S+ + +A +YN FH Sbjct: 507 GIKHVGNVLAKNLANHFKNIKALQHASLENLISLNDVGITVAESLYNWFH 556 >gi|251795535|ref|YP_003010266.1| excinuclease ABC subunit C [Paenibacillus sp. JDR-2] gi|247543161|gb|ACT00180.1| Excinuclease ABC C subunit domain protein [Paenibacillus sp. JDR-2] Length = 118 Score = 50.9 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G + + G VL+VGKA L+ RIK + + + ++ I V VE Sbjct: 39 GFFIFYNFKGDVLFVGKARKLRPRIKKHFEDSVSPMKNYR--DEVTKIEIYVNEDAVERE 96 Query: 71 LLEANMIKRLKPRFNI 86 + E +I + + ++N+ Sbjct: 97 IYETYLINQFRAKYNV 112 >gi|12045108|ref|NP_072919.1| DNA ligase, NAD-dependent [Mycoplasma genitalium G37] gi|1352291|sp|P47496|DNLJ_MYCGE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|3844852|gb|AAC71474.1| DNA ligase, NAD-dependent [Mycoplasma genitalium G37] gi|166078824|gb|ABY79442.1| DNA ligase, NAD-dependent [synthetic Mycoplasma genitalium JCVI-1.0] Length = 659 Score = 50.9 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 24/50 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I +G + + L F +K + +S E L S+ + +A +YN FH Sbjct: 508 GIKHVGNVLAKNLANHFKNIKALQHASLENLISLNDVGITVAESLYNWFH 557 >gi|220906114|ref|YP_002481425.1| NAD-dependent DNA ligase LigA [Cyanothece sp. PCC 7425] gi|254781305|sp|B8HV17|DNLJ_CYAP4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|219862725|gb|ACL43064.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7425] Length = 738 Score = 50.9 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 29/56 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + ++L +F +V+ + +S E + ++ GI +IA I F +H+ Sbjct: 581 GIRHVGSVNAQVLTTAFPSVERLMAASAEDIEAVHGIGPEIAQSIVQWFQTPANHS 636 Score = 39.3 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 4/59 (6%) Query: 559 EINGIGPLRKRLLLQSFG---TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +I+G+G R L+ G +V + R + L ++E + K+A K+ K+ S Sbjct: 515 DIDGVGEKLVRQLVDR-GLVNSVADLYRLTVAQLLTLERMGNKLAEKVVAAIAKSQSRP 572 >gi|322389144|ref|ZP_08062706.1| competence protein CelA [Streptococcus parasanguinis ATCC 903] gi|321144154|gb|EFX39570.1| competence protein CelA [Streptococcus parasanguinis ATCC 903] Length = 222 Score = 50.9 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 12/62 (19%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605 +A S L ++GIG R + ++ + S + L ++ GI +K K+ + Sbjct: 165 RATESELQTVSGIGQKRAQDIIAY-------REANGPFRSVDDLKNVSGIGEKTLEKLRD 217 Query: 606 HF 607 F Sbjct: 218 AF 219 >gi|305663906|ref|YP_003860194.1| ERCC4 domain protein [Ignisphaera aggregans DSM 17230] gi|304378475|gb|ADM28314.1| ERCC4 domain protein [Ignisphaera aggregans DSM 17230] Length = 239 Score = 50.9 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 23/48 (47%) Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 IGP +L+ G++ +S L IEG+ +K A +IY H Sbjct: 163 PNIGPKIALRILEELGSIHRFCNASLSELMRIEGLGEKKASEIYQIIH 210 >gi|258645494|ref|ZP_05732963.1| DNA ligase, NAD-dependent [Dialister invisus DSM 15470] gi|260402847|gb|EEW96394.1| DNA ligase, NAD-dependent [Dialister invisus DSM 15470] Length = 669 Score = 50.9 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 20/40 (50%) Query: 573 QSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 F T+ I + ET+ EGI K A +Y++FH + Sbjct: 527 HYFHTIDAIMAADVETIEETEGIGKITAKSLYDYFHDEKN 566 >gi|229003296|ref|ZP_04161126.1| DNA ligase [Bacillus mycoides Rock1-4] gi|228757914|gb|EEM07129.1| DNA ligase [Bacillus mycoides Rock1-4] Length = 669 Score = 50.9 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R L + F T+ + +++ E L I I +K+A I +F Sbjct: 512 GIRHVGAKAARTLAEHFETMDHLVKATEEELKEINEIGEKMAQSIVTYFDNED 564 >gi|226941791|ref|YP_002796865.1| DnlJ [Laribacter hongkongensis HLHK9] gi|254781355|sp|C1D4R5|DNLJ_LARHH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|226716718|gb|ACO75856.1| DnlJ [Laribacter hongkongensis HLHK9] Length = 692 Score = 50.9 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 22/51 (43%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G R L + FGT+ + + + L + + +A I + F + Sbjct: 536 GIRNVGEATARDLARHFGTLDALMAADQDMLMTAPDVGPIVARSIVDFFAE 586 >gi|295401729|ref|ZP_06811695.1| DNA ligase, NAD-dependent [Geobacillus thermoglucosidasius C56-YS93] gi|294976216|gb|EFG51828.1| DNA ligase, NAD-dependent [Geobacillus thermoglucosidasius C56-YS93] Length = 670 Score = 50.9 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 26/51 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G ++L + F T+ + ++ E L +I I +K+A I +F K Sbjct: 511 GIRHVGAKAAKVLAEHFETMDRLQNATKEELMAIHEIGEKMADSIVTYFAK 561 >gi|312112463|ref|YP_003990779.1| DNA ligase, NAD-dependent [Geobacillus sp. Y4.1MC1] gi|311217564|gb|ADP76168.1| DNA ligase, NAD-dependent [Geobacillus sp. Y4.1MC1] Length = 670 Score = 50.9 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 26/51 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G ++L + F T+ + ++ E L +I I +K+A I +F K Sbjct: 511 GIRHVGAKAAKVLAEHFETMDRLQNATKEELMAIHEIGEKMADSIVTYFAK 561 >gi|228989472|ref|ZP_04149457.1| DNA ligase [Bacillus pseudomycoides DSM 12442] gi|228770197|gb|EEM18776.1| DNA ligase [Bacillus pseudomycoides DSM 12442] Length = 669 Score = 50.9 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R L + F T+ + +++ E L I I +K+A I +F Sbjct: 512 GIRHVGAKAARTLAEHFETMDHLVKATEEELKEINEIGEKMAQSIVTYFDNED 564 >gi|228995667|ref|ZP_04155330.1| DNA ligase [Bacillus mycoides Rock3-17] gi|228764044|gb|EEM12928.1| DNA ligase [Bacillus mycoides Rock3-17] Length = 669 Score = 50.5 bits (119), Expect = 7e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R L + F T+ + +++ E L I I +K+A I +F Sbjct: 512 GIRHVGAKAARTLAEHFETMDHLVKATEEELKEINEIGEKMAQSIVTYFDNED 564 >gi|56708436|ref|YP_170332.1| DNA ligase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670907|ref|YP_667464.1| DNA ligase [Francisella tularensis subsp. tularensis FSC198] gi|134301572|ref|YP_001121540.1| DNA ligase [Francisella tularensis subsp. tularensis WY96-3418] gi|187931418|ref|YP_001891402.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. mediasiatica FSC147] gi|224457588|ref|ZP_03666061.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. tularensis MA00-2987] gi|254875281|ref|ZP_05247991.1| DNA ligase [Francisella tularensis subsp. tularensis MA00-2987] gi|81597232|sp|Q5NF60|DNLJ_FRATT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|123063401|sp|Q14GL3|DNLJ_FRAT1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166215759|sp|A4IWW8|DNLJ_FRATW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781335|sp|B2SFT1|DNLJ_FRATM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|56604928|emb|CAG46020.1| DNA ligase [Francisella tularensis subsp. tularensis SCHU S4] gi|110321240|emb|CAL09403.1| DNA ligase [Francisella tularensis subsp. tularensis FSC198] gi|134049349|gb|ABO46420.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. tularensis WY96-3418] gi|187712327|gb|ACD30624.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. mediasiatica FSC147] gi|254841280|gb|EET19716.1| DNA ligase [Francisella tularensis subsp. tularensis MA00-2987] gi|282159628|gb|ADA79019.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. tularensis NE061598] Length = 678 Score = 50.5 bits (119), Expect = 7e-04, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I IG + L FG+++ + E L I I + +A I + +H + Sbjct: 526 GIKDIGEVSSDALANHFGSLESFRDAKFEELIEINDIGEIMANNIVSFWHDS 577 >gi|254368889|ref|ZP_04984902.1| DNA ligase [Francisella tularensis subsp. holarctica FSC022] gi|157121810|gb|EDO65980.1| DNA ligase [Francisella tularensis subsp. holarctica FSC022] Length = 678 Score = 50.5 bits (119), Expect = 7e-04, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I IG + L FG+++ + E L I I + +A I + +H + Sbjct: 526 GIKDIGEVSSDALANHFGSLESFRDAKFEELIEINDIGEIMANNIVSFWHDS 577 >gi|295688455|ref|YP_003592148.1| DNA repair protein RadC [Caulobacter segnis ATCC 21756] gi|295430358|gb|ADG09530.1| DNA repair protein RadC [Caulobacter segnis ATCC 21756] Length = 256 Score = 50.5 bits (119), Expect = 7e-04, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 + LL FG+ + ++ E LA++ G+ + A + H+ T Sbjct: 80 KALLNRFGSFGGVLGATIEELATVPGVGETAAMDLKL-LHEAT 121 >gi|76798177|ref|ZP_00780429.1| DNA ligase, NAD-dependent [Streptococcus agalactiae 18RS21] gi|77405561|ref|ZP_00782652.1| DNA ligase, NAD-dependent [Streptococcus agalactiae H36B] gi|77410701|ref|ZP_00787060.1| DNA ligase, NAD-dependent [Streptococcus agalactiae CJB111] gi|76586485|gb|EAO62991.1| DNA ligase, NAD-dependent [Streptococcus agalactiae 18RS21] gi|77163237|gb|EAO74189.1| DNA ligase, NAD-dependent [Streptococcus agalactiae CJB111] gi|77175868|gb|EAO78646.1| DNA ligase, NAD-dependent [Streptococcus agalactiae H36B] Length = 648 Score = 50.5 bits (119), Expect = 7e-04, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 32/53 (60%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G RLLL+ FG ++ +S++S E++ASI+G+ IA ++ F K Sbjct: 498 GIRHVGSKASRLLLEEFGNLRQLSQASQESIASIDGLGGVIAKSLHTFFEKEE 550 >gi|303242964|ref|ZP_07329421.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2] gi|302589483|gb|EFL59274.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2] Length = 391 Score = 50.5 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 3/49 (6%) Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKI 603 PL+ I +GP L+ FG+ +K++ +S + L+ + ++ +IA I Sbjct: 322 PLEFIPKVGPKTIDKLVNHFGSEMKVLHDASYDDLSKV--VNDEIAKNI 368 >gi|38639919|ref|NP_943730.1| COX1-I7 [Penicillium marneffei] gi|33860273|gb|AAQ54931.1| COX1-I7 [Penicillium marneffei] Length = 273 Score = 50.5 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 14/92 (15%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKS--YMHSNNHTHR---ITHMIS-QINNI--- 58 + GVY ++ LY+G + NL KR+ S Y +++ + I M + N Sbjct: 50 KKSGVYVFINNINNQLYIGSSINLTKRMVSYYYYTNSDKLSKSVIIRAMKKYNLENFSLG 109 Query: 59 --RFTVTCTE-VEALLLEANMIKRLKPRFNIL 87 F E L LE I KP++N+L Sbjct: 110 ILEF--CKQEPKICLNLEQKWIDFYKPKYNVL 139 >gi|301063517|ref|ZP_07204049.1| DNA ligase (NAD(+)) [delta proteobacterium NaphS2] gi|300442456|gb|EFK06689.1| DNA ligase (NAD(+)) [delta proteobacterium NaphS2] Length = 671 Score = 50.5 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 29/49 (59%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G LL + FG ++ +S + E L++I+G+ +IA ++N+F Sbjct: 519 GIRHVGEFTAALLSERFGNIESLSNAGLEALSAIDGVGPQIAESVFNYF 567 >gi|150388772|ref|YP_001318821.1| NAD-dependent DNA ligase LigA [Alkaliphilus metalliredigens QYMF] gi|190359225|sp|A6TLU4|DNLJ_ALKMQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|149948634|gb|ABR47162.1| DNA ligase, NAD-dependent [Alkaliphilus metalliredigens QYMF] Length = 660 Score = 50.5 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 20/49 (40%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G L FG ++ I R++ + L + I +A I F Sbjct: 503 GIPNVGRKTAADLANYFGDLEKIQRANYDELVVLPDIGGIVAQSIVGFF 551 >gi|237737305|ref|ZP_04567786.1| predicted protein [Fusobacterium mortiferum ATCC 9817] gi|229421167|gb|EEO36214.1| predicted protein [Fusobacterium mortiferum ATCC 9817] Length = 220 Score = 50.5 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 14/82 (17%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G+Y + D ++Y+GK+ NL +RI S + + +++ +T T + Sbjct: 127 GLYFLYDQDKNLIYIGKSRNLNERIPS-------SVKERK----AYYLKYKLTKTLTDTH 175 Query: 71 LLEANMIKRLKPRFNILLRDDK 92 +LE I +LKP N +D K Sbjct: 176 ILELYYIAKLKPILN---KDSK 194 >gi|256390514|ref|YP_003112078.1| DNA ligase, NAD-dependent [Catenulispora acidiphila DSM 44928] gi|256356740|gb|ACU70237.1| DNA ligase, NAD-dependent [Catenulispora acidiphila DSM 44928] Length = 723 Score = 50.5 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 23/49 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R+L + F + ++ ++ E L + GI IA I F Sbjct: 557 SIRHVGPTAARVLAREFPSFDALANATEEDLKAANGIGPTIATAIVEWF 605 >gi|256822391|ref|YP_003146354.1| NAD-dependent DNA ligase [Kangiella koreensis DSM 16069] gi|256795930|gb|ACV26586.1| DNA ligase, NAD-dependent [Kangiella koreensis DSM 16069] Length = 667 Score = 50.5 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 21/45 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + + + F T+ I ++S E L S+ + +A I F Sbjct: 521 VGEVTAKNIAHHFLTLDGIIKASQEELESVPDVGPIVAHHIRAFF 565 >gi|77409440|ref|ZP_00786135.1| DNA ligase, NAD-dependent [Streptococcus agalactiae COH1] gi|77171952|gb|EAO75126.1| DNA ligase, NAD-dependent [Streptococcus agalactiae COH1] Length = 643 Score = 50.5 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 32/53 (60%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G RLLL+ FG ++ +S++S E++ASI+G+ IA ++ F K Sbjct: 493 GIRHVGSKASRLLLEEFGNLRQLSQASQESIASIDGLGGVIAKSLHTFFEKEE 545 Score = 38.9 bits (89), Expect = 2.3, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 559 EINGIGPLRKRLLLQ-SF-GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I G GP L V I R S E L +++GI +K A KIY+ + ++ Sbjct: 427 NITGFGPSLVEKLFDAHLIADVADIYRLSIEDLLTLDGIKEKSATKIYHAIQSSKENS 484 >gi|91216156|ref|ZP_01253124.1| Smf protein DNA processing chain A [Psychroflexus torquis ATCC 700755] gi|91185673|gb|EAS72048.1| Smf protein DNA processing chain A [Psychroflexus torquis ATCC 700755] Length = 366 Score = 50.5 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 23/44 (52%) Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 GIG + + LLQ FG+ + ++S L ++GI K + + Sbjct: 17 GIGHINAKKLLQYFGSATALFQASANDLKEVDGIGSKRIKTLRD 60 >gi|76787534|ref|YP_329595.1| NAD-dependent DNA ligase LigA [Streptococcus agalactiae A909] gi|123771969|sp|Q3K1K8|DNLJ_STRA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|76562591|gb|ABA45175.1| DNA ligase, NAD-dependent [Streptococcus agalactiae A909] Length = 652 Score = 50.5 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 32/53 (60%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G RLLL+ FG ++ +S++S E++ASI+G+ IA ++ F K Sbjct: 502 GIRHVGSKASRLLLEEFGNLRQLSQASQESIASIDGLGGVIAKSLHTFFEKEE 554 >gi|323705997|ref|ZP_08117567.1| DNA ligase, NAD-dependent [Thermoanaerobacterium xylanolyticum LX-11] gi|323534611|gb|EGB24392.1| DNA ligase, NAD-dependent [Thermoanaerobacterium xylanolyticum LX-11] Length = 659 Score = 50.5 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 26/54 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I+ IG +L F T++ + +++ E L IE I K+A + F + + Sbjct: 507 GIDLIGSKAAGILASHFKTMESLEKATFEELTEIEEIGPKMADSVVAFFKEKQN 560 >gi|239906999|ref|YP_002953740.1| NAD-dependent DNA ligase [Desulfovibrio magneticus RS-1] gi|239796865|dbj|BAH75854.1| NAD-dependent DNA ligase [Desulfovibrio magneticus RS-1] Length = 704 Score = 50.5 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 20/50 (40%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G R L F + + +S E L ++ I ++A I F + Sbjct: 539 VGTRTARTLAGHFHDLDALGAASLEELTALPDIGPEVAGSIREFFANEAN 588 >gi|228469580|ref|ZP_04054573.1| DNA ligase, NAD-dependent [Porphyromonas uenonis 60-3] gi|228308930|gb|EEK17605.1| DNA ligase, NAD-dependent [Porphyromonas uenonis 60-3] Length = 679 Score = 50.5 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 23/45 (51%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + L + F ++ +++++ L ++ + KIA ++ F Sbjct: 526 VGEGTAKTLARHFQSIDRLAQATAYELQALPDVGPKIAEQVVYFF 570 >gi|206974580|ref|ZP_03235496.1| conserved hypothetical protein [Bacillus cereus H3081.97] gi|217960547|ref|YP_002339111.1| hypothetical protein BCAH187_A3162 [Bacillus cereus AH187] gi|229139747|ref|ZP_04268315.1| hypothetical protein bcere0013_28560 [Bacillus cereus BDRD-ST26] gi|206747223|gb|EDZ58614.1| conserved hypothetical protein [Bacillus cereus H3081.97] gi|217065643|gb|ACJ79893.1| conserved hypothetical protein [Bacillus cereus AH187] gi|228643705|gb|EEK99968.1| hypothetical protein bcere0013_28560 [Bacillus cereus BDRD-ST26] Length = 213 Score = 50.5 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 52/105 (49%), Gaps = 20/105 (19%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 + G+Y + D ++Y+GKA+N++ R+ ++ +S ++ I + N + + + + Sbjct: 19 DDSGIYFIKDYNDNIIYIGKAFNIKSRVLAHFNSYSN---IKEYVHLFNKVAYLIEDS-- 73 Query: 68 EALLLEANMIK-----RLKPRFNILLRDDKSFP-----YILITDK 102 LL+ ++++ + KP N + K FP YI T+K Sbjct: 74 ---LLKRSLLQVTYMIKYKPVLNKEV--QKEFPELYTQYIKQTNK 113 >gi|332362528|gb|EGJ40328.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1056] Length = 652 Score = 50.5 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 30/55 (54%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G R+LL+ F + +S++S E +A+I+ I IA ++ +F + S Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQEEIAAIDSIGTVIAQSLHTYFEQEGSQ 556 >gi|324993931|gb|EGC25850.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK405] gi|324994750|gb|EGC26663.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK678] gi|327463193|gb|EGF09514.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1] Length = 652 Score = 50.5 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 30/55 (54%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G R+LL+ F + +S++S E +A+I+ I IA ++ +F + S Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQEEIAAIDSIGTVIAQSLHTYFEQEGSQ 556 >gi|254451520|ref|ZP_05064957.1| helicase, RecD/TraA family [Octadecabacter antarcticus 238] gi|198265926|gb|EDY90196.1| helicase, RecD/TraA family [Octadecabacter antarcticus 238] Length = 679 Score = 50.5 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 10/59 (16%) Query: 555 SPLDEIN---------GIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKI 603 S L+ I GIGP+ + L++ FG V + + PE L +EGI K A KI Sbjct: 35 SSLEGIEKYLGSGMIRGIGPVYAKRLVKKFGKDVFDLIEAEPERLREVEGIGPKRADKI 93 >gi|22537014|ref|NP_687865.1| NAD-dependent DNA ligase LigA [Streptococcus agalactiae 2603V/R] gi|81454504|sp|Q8E084|DNLJ_STRA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|22533870|gb|AAM99737.1|AE014230_17 DNA ligase, NAD-dependent [Streptococcus agalactiae 2603V/R] Length = 652 Score = 50.5 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 32/53 (60%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G RLLL+ FG ++ +S++S E++ASI+G+ IA ++ F K Sbjct: 502 GIRHVGSKASRLLLEEFGNLRQLSQASQESIASIDGLGGVIAKSLHTFFEKEE 554 >gi|77414096|ref|ZP_00790264.1| DNA ligase, NAD-dependent [Streptococcus agalactiae 515] gi|77159848|gb|EAO70991.1| DNA ligase, NAD-dependent [Streptococcus agalactiae 515] Length = 648 Score = 50.5 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 32/53 (60%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G RLLL+ FG ++ +S++S E++ASI+G+ IA ++ F K Sbjct: 498 GIRHVGSKASRLLLEEFGNLRQLSQASQESIASIDGLGGVIAKSLHTFFEKEE 550 Score = 38.9 bits (89), Expect = 2.4, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 559 EINGIGPLRKRLLLQ-SF-GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I G GP L V I R S E L +++GI +K A KIY+ + ++ Sbjct: 432 NITGFGPSLVEKLFDAHLIADVADIYRLSIEDLLTLDGIKEKSATKIYHAIQSSKENS 489 >gi|319744895|gb|EFV97229.1| NAD-dependent DNA ligase LigA [Streptococcus agalactiae ATCC 13813] Length = 652 Score = 50.5 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 32/53 (60%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G RLLL+ FG ++ +S++S E++ASI+G+ IA ++ F K Sbjct: 502 GIRHVGSKASRLLLEEFGNLRQLSQASQESIASIDGLGGVIAKSLHTFFEKEE 554 Score = 38.9 bits (89), Expect = 2.4, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 559 EINGIGPLRKRLLLQ-SF-GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I G GP L V I R S E L +++GI +K A KIY+ + ++ Sbjct: 436 NITGFGPSLVEKLFDAHLIADVADIYRLSIEDLLTLDGIKEKSATKIYHAIQSSKENS 493 >gi|25010923|ref|NP_735318.1| NAD-dependent DNA ligase LigA [Streptococcus agalactiae NEM316] gi|81457056|sp|Q8E5W1|DNLJ_STRA3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|23095302|emb|CAD46512.1| Unknown [Streptococcus agalactiae NEM316] Length = 652 Score = 50.5 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 32/53 (60%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G RLLL+ FG ++ +S++S E++ASI+G+ IA ++ F K Sbjct: 502 GIRHVGSKASRLLLEEFGNLRQLSQASQESIASIDGLGGVIAKSLHTFFEKEE 554 Score = 38.9 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 559 EINGIGPLRKRLLLQ-SF-GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I G GP L V I R S E L +++GI +K A KIY+ + ++ Sbjct: 436 NITGFGPSLVEKLFDAHLIADVADIYRLSIEDLLTLDGIKEKSATKIYHAIQSSKENS 493 >gi|323495433|ref|ZP_08100510.1| NAD-dependent DNA ligase LigA [Vibrio brasiliensis LMG 20546] gi|323310356|gb|EGA63543.1| NAD-dependent DNA ligase LigA [Vibrio brasiliensis LMG 20546] Length = 669 Score = 50.5 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 23/51 (45%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 +G L + F T++ + +S + L ++ I +A I F ++ + Sbjct: 521 VGEATAANLAKHFKTLEAVQAASHDDLIEVQDIGAIVASHITAFFAQDKNQ 571 >gi|406360|gb|AAD12433.1| homology to DNA ligase M36417 [Mycoplasma genitalium] Length = 98 Score = 50.5 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 24/50 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I +G + + L F +K + +S E L S+ + +A +YN FH Sbjct: 32 GIKHVGNVLAKNLANHFKNIKALQHASLENLISLNDVGITVAESLYNWFH 81 >gi|326330727|ref|ZP_08197031.1| DNA ligase, NAD-dependent [Nocardioidaceae bacterium Broad-1] gi|325951568|gb|EGD43604.1| DNA ligase, NAD-dependent [Nocardioidaceae bacterium Broad-1] Length = 702 Score = 50.5 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 23/48 (47%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 I +GP R L FG++ I +S E LA+ EG+ IA I Sbjct: 544 SIRHVGPSAARALATEFGSLDAIWAASQEELAATEGVGGIIAEAIVEW 591 >gi|313159317|gb|EFR58681.1| DNA ligase (NAD+) [Alistipes sp. HGB5] Length = 694 Score = 50.5 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 23/50 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + L + F ++ + +++ E L + + +IA I +F + Sbjct: 513 VGETTAKYLAEHFRSLDAVMKATREELTEADEVGGRIADAIIEYFADEKN 562 >gi|170079101|ref|YP_001735739.1| DNA protecting protein [Synechococcus sp. PCC 7002] gi|169886770|gb|ACB00484.1| DNA protecting protein [Synechococcus sp. PCC 7002] Length = 381 Score = 50.5 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 27/47 (57%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 +I G+GP R + + FG+++ ++S + L +++G+ K+ I Sbjct: 11 QIKGVGPSRLKKIWHCFGSMERAWQASGQELGAVDGLGDKLIRLILA 57 >gi|218295128|ref|ZP_03495964.1| DNA ligase, NAD-dependent [Thermus aquaticus Y51MC23] gi|218244331|gb|EED10856.1| DNA ligase, NAD-dependent [Thermus aquaticus Y51MC23] Length = 674 Score = 50.5 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 22/50 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 + G+G + R L FG + + + E L +EG+ + A I N Sbjct: 514 GLPGVGEVLARNLALRFGHMDRLLEAGLEDLLEVEGVGELTARAILNTLK 563 >gi|302558233|ref|ZP_07310575.1| DNA ligase, NAD-dependent [Streptomyces griseoflavus Tu4000] gi|302475851|gb|EFL38944.1| DNA ligase, NAD-dependent [Streptomyces griseoflavus Tu4000] Length = 731 Score = 50.5 bits (119), Expect = 9e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + S I +GP+ L + F ++ I +++ E LA+ EG+ IA + F + Sbjct: 556 ARVLTS--LSIRHVGPVAAEALAREFRSIDRIEQATEEELAATEGVGGIIAASLKQWFAE 613 Query: 610 N 610 + Sbjct: 614 D 614 >gi|53803401|ref|YP_114852.1| DNA ligase, NAD-dependent [Methylococcus capsulatus str. Bath] gi|81681278|sp|Q604U8|DNLJ_METCA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|53757162|gb|AAU91453.1| DNA ligase, NAD-dependent [Methylococcus capsulatus str. Bath] Length = 673 Score = 50.5 bits (119), Expect = 9e-04, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 24/45 (53%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + ++L + FG+++ + ++ E L ++ + ++ I F Sbjct: 522 VGEVTAKVLSEHFGSLEALMEATEEELLAVADVGPVVSRHIRLFF 566 >gi|7674018|sp|Q9ZFY8|DNLJ_THESK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|4235370|gb|AAD13188.1| NAD-dependent DNA ligase [Thermus sp. AK16D] Length = 674 Score = 50.5 bits (119), Expect = 9e-04, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 22/50 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 + G+G + R L FG + + + E L +EG+ + A I N Sbjct: 514 GLPGVGEVLARNLALRFGHMDRLLEAGLEDLLEVEGVGELTARAILNTLK 563 >gi|253997552|ref|YP_003049616.1| DNA protecting protein DprA [Methylotenera mobilis JLW8] gi|253984231|gb|ACT49089.1| DNA protecting protein DprA [Methylotenera mobilis JLW8] Length = 370 Score = 50.5 bits (119), Expect = 9e-04, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 K+ + L I+GIGP LL++FG+ I +S L + +S IA I Sbjct: 11 KSLWVSLGSISGIGPQTFCQLLRAFGSPYNIYAASLSQLKEV--VSATIANAI 61 >gi|254478702|ref|ZP_05092073.1| hypothetical protein CDSM653_287 [Carboxydibrachium pacificum DSM 12653] gi|214035389|gb|EEB76092.1| hypothetical protein CDSM653_287 [Carboxydibrachium pacificum DSM 12653] Length = 391 Score = 50.5 bits (119), Expect = 9e-04, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%) Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNH 606 PL+ I IG L+ FG+ + + +S E L + G +K A I Sbjct: 321 PLEFIPNIGKRTVEKLVHHFGSELYALHEASYEDLEKVVG--EKNALNILKA 370 >gi|20807760|ref|NP_622931.1| hypothetical protein TTE1311 [Thermoanaerobacter tengcongensis MB4] gi|20516315|gb|AAM24535.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis MB4] Length = 391 Score = 50.5 bits (119), Expect = 9e-04, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%) Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNH 606 PL+ I IG L+ FG+ + + +S E L + G +K A I Sbjct: 321 PLEFIPNIGKRTVEKLVHHFGSELYALHEASYEDLEKVVG--EKNALNILKA 370 >gi|14590190|ref|NP_142255.1| DNA repair and recombination protein RadA [Pyrococcus horikoshii OT3] gi|13878667|sp|O58001|RADA_PYRHO RecName: Full=DNA repair and recombination protein radA; Contains: RecName: Full=Pho radA intein gi|3256652|dbj|BAA29335.1| 529aa long hypothetical DNA repair protein [Pyrococcus horikoshii OT3] Length = 529 Score = 50.5 bits (119), Expect = 9e-04, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 559 EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 ++ G+GP L ++ F T++ I+ +SP L + GIS+ A KI K + Sbjct: 47 DLPGVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAAN 101 >gi|307244714|ref|ZP_07526816.1| DNA integrity scanning family protein [Peptostreptococcus stomatis DSM 17678] gi|306491891|gb|EFM63942.1| DNA integrity scanning family protein [Peptostreptococcus stomatis DSM 17678] Length = 358 Score = 50.5 bits (119), Expect = 9e-04, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 4/47 (8%) Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 GI L++ FG+ + I +S E L ++GI + A I N Sbjct: 303 EGI----IDNLIEHFGSFQDILEASIEELDEVDGIGEIRATYIRNGL 345 >gi|124006376|ref|ZP_01691210.1| DNA ligase, NAD-dependent [Microscilla marina ATCC 23134] gi|123988033|gb|EAY27704.1| DNA ligase, NAD-dependent [Microscilla marina ATCC 23134] Length = 691 Score = 50.5 bits (119), Expect = 9e-04, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 25/50 (50%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + L F T++ I ++S + L ++E I +IA + HF + Sbjct: 521 VGKTVAQKLAVHFKTMEAIQKASHDELVAVEDIGGRIADSLIEHFKDTEN 570 >gi|57641371|ref|YP_183849.1| alpha-amylase [Thermococcus kodakarensis KOD1] gi|57159695|dbj|BAD85625.1| probable alpha-amylase, GH57 family [Thermococcus kodakarensis KOD1] Length = 675 Score = 50.5 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 6/58 (10%) Query: 546 RKRRKKAAY---SPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKK 598 RK KKA S L I GIGP + L + G T++ + ++ E LA GIS K Sbjct: 609 RKVSKKAPSKGPSDLLSIKGIGPKTFQKL-KRAGVETIEDLKNANIEDLARKTGISTK 665 >gi|298372045|ref|ZP_06982035.1| DNA ligase, NAD-dependent [Bacteroidetes oral taxon 274 str. F0058] gi|298274949|gb|EFI16500.1| DNA ligase, NAD-dependent [Bacteroidetes oral taxon 274 str. F0058] Length = 670 Score = 50.5 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 26/49 (53%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 +G + L ++F +++ + ++ E L ++ I + IA + ++F K Sbjct: 517 VGETVAKRLAKAFPSIEQLEEATLEQLIQVDEIGEVIARSVVDYFAKEE 565 >gi|33602779|ref|NP_890339.1| DNA ligase [Bordetella bronchiseptica RB50] gi|81429836|sp|Q7WCJ7|DNLJ_BORBR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|33577221|emb|CAE35778.1| DNA ligase [Bordetella bronchiseptica RB50] Length = 696 Score = 50.5 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 24/51 (47%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G R + + FG+++ I +S E L ++ + +A I F + Sbjct: 545 GIRHVGETTARDVARHFGSMERIMDASEEALLAVPDVGGVVAGSIRRFFAE 595 >gi|33597876|ref|NP_885519.1| DNA ligase [Bordetella parapertussis 12822] gi|81425567|sp|Q7W0T4|DNLJ_BORPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|33574305|emb|CAE38638.1| DNA ligase [Bordetella parapertussis] Length = 696 Score = 50.5 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 24/51 (47%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G R + + FG+++ I +S E L ++ + +A I F + Sbjct: 545 GIRHVGETTARDVARHFGSMERIMDASEEALLAVPDVGGVVAGSIRRFFAE 595 >gi|33594429|ref|NP_882073.1| DNA ligase [Bordetella pertussis Tohama I] gi|81424006|sp|Q7VRX7|DNLJ_BORPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|33564504|emb|CAE43819.1| DNA ligase [Bordetella pertussis Tohama I] gi|332383840|gb|AEE68687.1| DNA ligase [Bordetella pertussis CS] Length = 696 Score = 50.5 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 24/51 (47%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G R + + FG+++ I +S E L ++ + +A I F + Sbjct: 545 GIRHVGETTARDVARHFGSMERIMDASEEALLAVPDVGGVVAGSIRRFFAE 595 >gi|20092352|ref|NP_618427.1| DNA repair and recombination protein RadA [Methanosarcina acetivorans C2A] gi|34395790|sp|Q8TK71|RADA_METAC RecName: Full=DNA repair and recombination protein radA gi|19917601|gb|AAM06907.1| DNA repair protein [Methanosarcina acetivorans C2A] Length = 325 Score = 50.5 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+E+ G+GP L ++ F TV+ ++ +SP LA+ I + A KI N Sbjct: 5 ALEELPGVGPATAEKLKEAGFNTVEAVAVASPSELATTAEIGESTAAKIIN 55 >gi|332299534|ref|YP_004441455.1| DNA ligase [Porphyromonas asaccharolytica DSM 20707] gi|332176597|gb|AEE12287.1| DNA ligase [Porphyromonas asaccharolytica DSM 20707] Length = 679 Score = 50.5 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 23/45 (51%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + L + F ++ +++++ L ++ + KIA ++ F Sbjct: 526 VGEGTAKTLARHFQSIDRLAQATDYELQALPDVGPKIAEQVVYFF 570 >gi|313886637|ref|ZP_07820349.1| DNA ligase (NAD+) [Porphyromonas asaccharolytica PR426713P-I] gi|312923933|gb|EFR34730.1| DNA ligase (NAD+) [Porphyromonas asaccharolytica PR426713P-I] Length = 679 Score = 50.5 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 23/45 (51%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + L + F ++ +++++ L ++ + KIA ++ F Sbjct: 526 VGEGTAKTLARHFQSIDRLAQATDYELQALPDVGPKIAEQVVYFF 570 >gi|309792382|ref|ZP_07686850.1| DNA ligase, NAD-dependent [Oscillochloris trichoides DG6] gi|308225603|gb|EFO79363.1| DNA ligase, NAD-dependent [Oscillochloris trichoides DG6] Length = 674 Score = 50.5 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF-HKN 610 +G + + L +G++ I ++ L IEGI +A + + F H Sbjct: 525 VGSVAAQTLANQYGSLDAIMAATQADLEQIEGIGPVLAASVVDFFQHPE 573 >gi|291278945|ref|YP_003495780.1| NAD-dependent DNA ligase [Deferribacter desulfuricans SSM1] gi|290753647|dbj|BAI80024.1| NAD-dependent DNA ligase [Deferribacter desulfuricans SSM1] Length = 663 Score = 50.5 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +G R+L F ++ + +++ E L SI+ + + IA +Y Sbjct: 506 GIRHVGIKTARILTNHFKNIEKLQKATIEELVSIDEVGEIIAKSVYYTLRDE 557 >gi|317127163|ref|YP_004093445.1| DNA ligase, NAD-dependent [Bacillus cellulosilyticus DSM 2522] gi|315472111|gb|ADU28714.1| DNA ligase, NAD-dependent [Bacillus cellulosilyticus DSM 2522] Length = 670 Score = 50.5 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 24/49 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G + L Q F T+ I ++ E L +I + +K+A + +F Sbjct: 511 GIRHVGAKAAKTLAQHFNTIDQIQNATREDLEAINEVGEKMADAVVTYF 559 >gi|217970592|ref|YP_002355826.1| DNA ligase, NAD-dependent [Thauera sp. MZ1T] gi|217507919|gb|ACK54930.1| DNA ligase, NAD-dependent [Thauera sp. MZ1T] Length = 693 Score = 50.5 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 20/51 (39%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G R L + FG + + + + L + + +A I F + Sbjct: 535 GIRNVGEATARDLARHFGKLDALIAADVDALQQVPDVGPIVAKCIAEFFAE 585 >gi|77407286|ref|ZP_00784228.1| DNA ligase, NAD-dependent [Streptococcus agalactiae H36B] gi|77174105|gb|EAO77032.1| DNA ligase, NAD-dependent [Streptococcus agalactiae H36B] Length = 223 Score = 50.5 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 32/53 (60%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G RLLL+ FG ++ +S++S E++ASI+G+ IA ++ F K Sbjct: 114 GIRHVGSKASRLLLEEFGNLRQLSQASQESIASIDGLGGVIAKSLHTFFEKEE 166 >gi|156937796|ref|YP_001435592.1| DNA repair and recombination protein RadA [Ignicoccus hospitalis KIN4/I] gi|166218760|sp|A8AB83|RADA_IGNH4 RecName: Full=DNA repair and recombination protein radA gi|156566780|gb|ABU82185.1| DNA repair and recombination protein RadA [Ignicoccus hospitalis KIN4/I] Length = 327 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%) Query: 559 EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606 E+ G+GP L+ + +GT++ ++ ++PE L +I GI A KI Sbjct: 16 ELPGVGPSTAAKLIDAGYGTIEALAVATPEELVAI-GIPLTTAQKIIRA 63 >gi|118445181|ref|YP_891150.1| excinuclease ABC subunit C [Bacillus thuringiensis str. Al Hakam] gi|118419742|gb|ABK88160.1| possible excinuclease ABC subunit [Bacillus thuringiensis str. Al Hakam] Length = 274 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 2/71 (2%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 GVY + D+ ++YVGK +++KR+ ++ + + N I + + + ++ Sbjct: 22 GVYLITDVEDNIIYVGKGLSIKKRVNAHFKGYSKN--TQELSYLFNKIAYILEESPLKRS 79 Query: 71 LLEANMIKRLK 81 LLE + K Sbjct: 80 LLEIQFMIEYK 90 >gi|311113170|ref|YP_003984392.1| NAD-dependent DNA ligase LigA [Rothia dentocariosa ATCC 17931] gi|310944664|gb|ADP40958.1| NAD-dependent DNA ligase LigA [Rothia dentocariosa ATCC 17931] Length = 740 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG++ I+++ + LA+++G+ IA I F Sbjct: 579 SIRHVGPTAARALATEFGSMDAIAQADRDRLAAVDGVGGVIADSIIEWF 627 >gi|225849802|ref|YP_002730036.1| protein smf (DNA-processing chain A) [Persephonella marina EX-H1] gi|225645083|gb|ACO03269.1| protein smf (DNA-processing chain A) [Persephonella marina EX-H1] Length = 352 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 L I GIG +LL+ +FG+ + I + S L+S+ G S +A I Sbjct: 8 QLSYIKGIGNKTLKLLINTFGSPENIFQLSFSELSSVVGSS--VAELILK 55 >gi|20093551|ref|NP_613398.1| superfamily II helicase [Methanopyrus kandleri AV19] gi|19886395|gb|AAM01328.1| Predicted Superfamily II helicase [Methanopyrus kandleri AV19] Length = 711 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L E+ G+G L ++ + +V+ ++ ++ L + GI +++A KI Sbjct: 653 ELTEVEGVGRTLAMRLYRAGYHSVRDLAEATVPELTRVRGIGEQLARKILE 703 >gi|227356188|ref|ZP_03840577.1| DNA ligase [Proteus mirabilis ATCC 29906] gi|227163652|gb|EEI48568.1| DNA ligase [Proteus mirabilis ATCC 29906] Length = 675 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 21/48 (43%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +G L F +++ + ++ E L ++ + +A + N F + Sbjct: 521 VGEATANGLTAHFVSLEALREANIEALKAVPDVGDIVAKHVVNFFQEE 568 >gi|197285679|ref|YP_002151551.1| NAD-dependent DNA ligase LigA [Proteus mirabilis HI4320] gi|254781393|sp|B4EZR2|DNLJ_PROMH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|194683166|emb|CAR43788.1| DNA ligase [Proteus mirabilis HI4320] Length = 675 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 21/48 (43%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +G L F +++ + ++ E L ++ + +A + N F + Sbjct: 521 VGEATANGLTAHFVSLEALREANIEALKAVPDVGDIVAKHVVNFFQEE 568 >gi|77359784|ref|YP_339359.1| competence protein [Pseudoalteromonas haloplanktis TAC125] gi|76874695|emb|CAI85916.1| conserved protein of unknown function; putative competence protein [Pseudoalteromonas haloplanktis TAC125] Length = 99 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 12/54 (22%) Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKI 603 S L ++ GIG + + ++ + S E L ++GI KK+A K+ Sbjct: 47 SQLSKLPGIGKKKAQAIIDY-------REAKGNFTSLEDLKMVKGIGKKLAAKL 93 >gi|120554094|ref|YP_958445.1| DNA ligase, NAD-dependent [Marinobacter aquaeolei VT8] gi|166215819|sp|A1TZT9|DNLJ_MARAV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|120323943|gb|ABM18258.1| DNA ligase, NAD-dependent [Marinobacter aquaeolei VT8] Length = 678 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 23/45 (51%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + L FGT++ IS + ETL ++ + +A I + F Sbjct: 524 VGEATAKGLAAHFGTLEAISAADEETLQTVPDVGPIVAGHIRSFF 568 >gi|302554316|ref|ZP_07306658.1| DNA ligase, NAD-dependent [Streptomyces viridochromogenes DSM 40736] gi|302471934|gb|EFL35027.1| DNA ligase, NAD-dependent [Streptomyces viridochromogenes DSM 40736] Length = 731 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + S I +GP+ L + F +++ I +++ E LA EG+ IA + F + Sbjct: 556 ARIITS--LSIRHVGPVAAEALAREFRSIERIDQATEEELAVTEGVGPTIAASLKQWFAE 613 Query: 610 N 610 + Sbjct: 614 D 614 >gi|157819415|ref|NP_001099698.1| DNA excision repair protein ERCC-1 [Rattus norvegicus] gi|149056779|gb|EDM08210.1| excision repair cross-complementing rodent repair deficiency, complementation group 1 (predicted), isoform CRA_a [Rattus norvegicus] gi|149056780|gb|EDM08211.1| excision repair cross-complementing rodent repair deficiency, complementation group 1 (predicted), isoform CRA_a [Rattus norvegicus] Length = 298 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 24/41 (58%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + LL +FG+++ + +S E LA G+ + A +++ H+ Sbjct: 251 QTLLTTFGSLEQLITASREDLALCPGLGPQKARRLFEVLHE 291 >gi|296131790|ref|YP_003639037.1| DNA integrity scanning, DisA, linker region [Thermincola sp. JR] gi|296030368|gb|ADG81136.1| DNA integrity scanning, DisA, linker region [Thermincola potens JR] Length = 359 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 20/42 (47%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L+ +F +++ I +S E L +EGI + A I + Sbjct: 306 IENLVNNFKSLQRILNASIEELDDVEGIGEVRARAIKEGLKR 347 >gi|332799337|ref|YP_004460836.1| PHP domain-containing protein [Tepidanaerobacter sp. Re1] gi|332697072|gb|AEE91529.1| PHP domain protein [Tepidanaerobacter sp. Re1] Length = 392 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKI 603 PL+ I GIG LL +FGT + +I + + L+ + I ++ A I Sbjct: 320 PLEFIPGIGKKTIEKLLLNFGTEMDVIHNTDIKELSEV--IGEQKAKNI 366 >gi|300710392|ref|YP_003736206.1| 50S ribosomal protein L32e [Halalkalicoccus jeotgali B3] gi|299124075|gb|ADJ14414.1| 50S ribosomal protein L32e [Halalkalicoccus jeotgali B3] Length = 234 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 555 SPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605 + L +I+G+G + L + + V+ + +S + LA +EGI +A +I Sbjct: 6 TELTDISGVGDSKADALRAAGYEDVEDVKAASQDDLAEVEGIGNALAARIKA 57 >gi|224130994|ref|XP_002328427.1| predicted protein [Populus trichocarpa] gi|222838142|gb|EEE76507.1| predicted protein [Populus trichocarpa] Length = 382 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 21/35 (60%) Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 FG++ I +S E LA GI ++ ++Y+ FH+ Sbjct: 253 FGSLSNIMDASMEDLARCPGIGERKVKRLYDTFHE 287 >gi|126658133|ref|ZP_01729284.1| SMF protein [Cyanothece sp. CCY0110] gi|126620504|gb|EAZ91222.1| SMF protein [Cyanothece sp. CCY0110] Length = 375 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 27/47 (57%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 +I G+GP+ + + Q FG ++ ++SPE L +EGI K+ I Sbjct: 13 KIPGVGPVLLKRVWQQFGNLETAWKASPEALCQVEGIGAKLLNTIKQ 59 >gi|46199091|ref|YP_004758.1| DNA-dependent DNA polymerase beta chain [Thermus thermophilus HB27] gi|46196715|gb|AAS81131.1| DNA-dependent DNA polymerase beta chain [Thermus thermophilus HB27] Length = 575 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 5/68 (7%) Query: 545 HRKRRKKAAYSPLD--EINGIGPLRKRLLLQSFG--TVKMISRS-SPETLASIEGISKKI 599 H + +K L+ E+ G+GP RLL + G +++ + + L ++G K Sbjct: 81 HEELSQKVPRGVLEVMEVPGVGPKTARLLYEGLGIDSLEKLKAALDRGDLTRLKGFGPKR 140 Query: 600 ACKIYNHF 607 A +I Sbjct: 141 AERIREGL 148 >gi|300742472|ref|ZP_07072493.1| putative DNA-binding protein [Rothia dentocariosa M567] gi|311112367|ref|YP_003983589.1| exopolyphosphatase [Rothia dentocariosa ATCC 17931] gi|300381657|gb|EFJ78219.1| putative DNA-binding protein [Rothia dentocariosa M567] gi|310943861|gb|ADP40155.1| exopolyphosphatase [Rothia dentocariosa ATCC 17931] Length = 354 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 24/51 (47%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 LD I I L++ FGT++ + +S E L ++GI + A + Sbjct: 292 LDGIATIPNTIAERLVERFGTLQALMAASLEDLRDVDGIGEHRARTVRESL 342 >gi|253700153|ref|YP_003021342.1| DNA protecting protein DprA [Geobacter sp. M21] gi|251775003|gb|ACT17584.1| DNA protecting protein DprA [Geobacter sp. M21] Length = 359 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 2/53 (3%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI--YNHFHKNTSH 613 +G + LL FGT + ++S + L+ ++G+S + A I +++ H+ +S Sbjct: 15 VGNVTFLRLLSRFGTPERALKASLQELSEVKGVSPQAAASIAGHDYAHQASSE 67 >gi|119872658|ref|YP_930665.1| DEAD/DEAH box helicase domain-containing protein [Pyrobaculum islandicum DSM 4184] gi|119674066|gb|ABL88322.1| DEAD/DEAH box helicase domain protein [Pyrobaculum islandicum DSM 4184] Length = 706 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%) Query: 562 GIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN 605 G+G +R R L FG TV+ I+R+S +AS+ G +K+A I Sbjct: 653 GVGRVRARTLYN-FGYRTVRDIARASIREIASLPGFGEKLAKSIIE 697 >gi|29829290|ref|NP_823924.1| NAD-dependent DNA ligase LigA [Streptomyces avermitilis MA-4680] gi|81719851|sp|Q82JK7|DNLJ_STRAW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|29606397|dbj|BAC70459.1| putative DNA ligase [Streptomyces avermitilis MA-4680] Length = 730 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 18/79 (22%) Query: 549 RKKAAYSPLDEIN------------G-----IGPLRKRLLLQSFGTVKMISRSSPETLAS 591 RK A S LD I G +GP+ L ++F ++ I +++ E L Sbjct: 536 RKNAI-SMLDNIAAAKERPLARILTGLSIRHVGPVAAEALARAFRSIDRIDQATEEELKD 594 Query: 592 IEGISKKIACKIYNHFHKN 610 +G+ +A + F ++ Sbjct: 595 TDGVGPIVAAAVKQWFAED 613 >gi|55981119|ref|YP_144416.1| DNA polymerase beta family protein [Thermus thermophilus HB8] gi|55772532|dbj|BAD70973.1| DNA polymerase beta family (X family) [Thermus thermophilus HB8] Length = 575 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 5/68 (7%) Query: 545 HRKRRKKAAYSPLD--EINGIGPLRKRLLLQSFG--TVKMISRS-SPETLASIEGISKKI 599 H + +K L+ E+ G+GP RLL + G +++ + + L ++G K Sbjct: 81 HEELSRKVPRGVLEVMEVPGVGPKTARLLYEGLGIDSLEKLKAALDRGDLTRLKGFGPKR 140 Query: 600 ACKIYNHF 607 A +I Sbjct: 141 AERIREGL 148 >gi|332796520|ref|YP_004458020.1| nucleotide excision repair nuclease, Xpf [Acidianus hospitalis W1] gi|332694255|gb|AEE93722.1| nucleotide excision repair nuclease, Xpf [Acidianus hospitalis W1] Length = 230 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + IG + + LL+ F T++ I +S L + G S+K A ++Y Sbjct: 161 ESFPNIGEVNAKKLLEKFSTIRNICNASISDLERVLG-SRKRAEELYKIL 209 >gi|311898479|dbj|BAJ30887.1| putative DNA ligase [Kitasatospora setae KM-6054] Length = 788 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 7/70 (10%) Query: 547 KRRKKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 R A SPL I +GP+ + L + F + + + L ++EGI IA Sbjct: 561 NLRA-ARTSPLWRFLNGLSIRHVGPVAAQALAREFRDLDRVFAADETELTAVEGIGPTIA 619 Query: 601 CKIYNHFHKN 610 + + ++ Sbjct: 620 RAVKEWYAED 629 >gi|154151638|ref|YP_001405256.1| DNA repair and recombination protein RadA [Candidatus Methanoregula boonei 6A8] gi|154000190|gb|ABS56613.1| DNA repair and recombination protein RadA [Methanoregula boonei 6A8] Length = 325 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 ++++ G+GP L ++ + +V+ I+ +SP L+ I IS+ A KI ++ Sbjct: 7 EIEDLPGVGPSTADKLREAGYLSVESIATASPAELSEITEISESTAKKIIKAARESAD 64 >gi|119539|sp|P07903|ERCC1_MOUSE RecName: Full=DNA excision repair protein ERCC-1 gi|50855|emb|CAA30310.1| unnamed protein product [Mus musculus] Length = 298 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 24/41 (58%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + LL +FG+++ + +S E LA G+ + A +++ H+ Sbjct: 251 QTLLATFGSLEQLFTASREDLALCPGLGPQKARRLFEVLHE 291 >gi|187960064|ref|NP_031974.2| DNA excision repair protein ERCC-1 isoform a [Mus musculus] gi|15029977|gb|AAH11224.1| Excision repair cross-complementing rodent repair deficiency, complementation group 1 [Mus musculus] gi|26353238|dbj|BAC40249.1| unnamed protein product [Mus musculus] gi|74203782|dbj|BAE23112.1| unnamed protein product [Mus musculus] gi|148691190|gb|EDL23137.1| excision repair cross-complementing rodent repair deficiency, complementation group 1 [Mus musculus] Length = 298 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 24/41 (58%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + LL +FG+++ + +S E LA G+ + A +++ H+ Sbjct: 251 QTLLATFGSLEQLFTASREDLALCPGLGPQKARRLFEVLHE 291 >gi|315655583|ref|ZP_07908481.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii ATCC 51333] gi|315489647|gb|EFU79274.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii ATCC 51333] Length = 794 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 27/49 (55%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP+ R + + F T+ I +S E L +EG+ + IA I++ F Sbjct: 631 SIRHLGPVAARTIARQFATMSAIRAASVEQLGEVEGVGEVIAASIHDWF 679 >gi|306835907|ref|ZP_07468900.1| NAD-dependent DNA ligase LigA [Corynebacterium accolens ATCC 49726] gi|304568181|gb|EFM43753.1| NAD-dependent DNA ligase LigA [Corynebacterium accolens ATCC 49726] Length = 689 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 25/49 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP+ R L +G+++ + + E LA ++G+ IA + F Sbjct: 534 SIRHVGPIAARALAARYGSMEKLRAAKTEDLAEVDGVGAVIAESFHAWF 582 >gi|306825436|ref|ZP_07458776.1| competence protein CelA [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432374|gb|EFM35350.1| competence protein CelA [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 216 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIY 604 KA+ L +I G+G R + ++ F +V + L + GI K K+ Sbjct: 159 KASLEELKQIKGLGGKRAQDIIDHRETNGKFKSV--------DELKKVSGIGAKTIEKLK 210 Query: 605 NH 606 ++ Sbjct: 211 DY 212 >gi|227501728|ref|ZP_03931777.1| NAD-dependent DNA ligase LigA [Corynebacterium accolens ATCC 49725] gi|227077753|gb|EEI15716.1| NAD-dependent DNA ligase LigA [Corynebacterium accolens ATCC 49725] Length = 680 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 25/49 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP+ R L +G+++ + + E LA ++G+ IA + F Sbjct: 525 SIRHVGPIAARALAARYGSMEKLRAAKTEDLAEVDGVGAVIAESFHAWF 573 >gi|195056714|ref|XP_001995148.1| GH22789 [Drosophila grimshawi] gi|193899354|gb|EDV98220.1| GH22789 [Drosophila grimshawi] Length = 254 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 26/54 (48%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L I + LLQ FG ++ + +S E LA + G+ + A K+Y H+ Sbjct: 196 ALTNIKPVNKTDAVTLLQIFGNLENLINASEERLAQVMGLGPRKAKKLYKTLHE 249 >gi|296110658|ref|YP_003621039.1| NAD-dependent DNA ligase [Leuconostoc kimchii IMSNU 11154] gi|295832189|gb|ADG40070.1| NAD-dependent DNA ligase [Leuconostoc kimchii IMSNU 11154] Length = 681 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 29/46 (63%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 +G RL+ + F T+ +I+R++ +A+I+GI + IA + +F+ Sbjct: 526 VGAKAARLIAEKFKTLSVIARATVSEIANIDGIGETIARSLVQYFN 571 >gi|393385|emb|CAA52039.1| unnamed protein product [Trimorphomyces papilionaceus] Length = 302 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 14/89 (15%) Query: 10 PGVYQMLDI-AGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITH-------MISQINNIRF 60 PGVY+ +D + VLYVG + NL R+ +Y+ +++T + ++SQ + Sbjct: 138 PGVYKFVDKVSNXVLYVGSSVNLGARVNAYLKPKSSNTIKGPMGAFVRGDLLSQAK-LEV 196 Query: 61 TVTCTEVEALLL---EANMIKRLKPRFNI 86 + +LL E I P FN+ Sbjct: 197 LPLPSVF-SLLHISIEQFFILLYNPLFNV 224 >gi|183599716|ref|ZP_02961209.1| hypothetical protein PROSTU_03219 [Providencia stuartii ATCC 25827] gi|188021975|gb|EDU60015.1| hypothetical protein PROSTU_03219 [Providencia stuartii ATCC 25827] Length = 671 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 25/52 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L +GT++ + + E+L +++ + +A + N F + + T Sbjct: 519 VGEATAANLAAHYGTLEALMAADEESLKTVQDVGHVVAKHVVNFFREEHNQT 570 >gi|310768269|gb|ADP13219.1| NAD-dependent DNA ligase LigA [Erwinia sp. Ejp617] Length = 670 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 25/54 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I+ +G L FGT+ + + + L +++ + K +A + N + ++ Sbjct: 514 GISEVGEATAANLAAHFGTLDALMAADLDALMAVQDVGKVVASHVRNFLDEESN 567 >gi|259907817|ref|YP_002648173.1| NAD-dependent DNA ligase LigA [Erwinia pyrifoliae Ep1/96] gi|224963439|emb|CAX54927.1| DNA ligase [Erwinia pyrifoliae Ep1/96] gi|283477688|emb|CAY73604.1| DNA ligase [Erwinia pyrifoliae DSM 12163] Length = 678 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 25/54 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I+ +G L FGT+ + + + L +++ + K +A + N + ++ Sbjct: 514 GISEVGEATAANLAAHFGTLDALMAADLDALMAVQDVGKVVASHVRNFLDEESN 567 >gi|218779037|ref|YP_002430355.1| DNA protecting protein DprA [Desulfatibacillum alkenivorans AK-01] gi|218760421|gb|ACL02887.1| DNA protecting protein DprA [Desulfatibacillum alkenivorans AK-01] Length = 375 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 29/50 (58%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 L + GIG L R LL+ F + + ++S L +++GIS ++A I NH Sbjct: 10 LKSVPGIGNLLFRRLLERFSHPEEVIKASQAKLTAVQGISPRLARAILNH 59 >gi|315180839|gb|ADT87753.1| DNA ligase [Vibrio furnissii NCTC 11218] Length = 669 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 20/51 (39%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 +G L F T+ I ++ E L + + +A ++ F + + Sbjct: 520 VGEATAMNLAHHFLTLDAIREATIEQLIEVPDVGTIVASHVHAFFAQERNQ 570 >gi|294649516|ref|ZP_06726937.1| NAD-dependent DNA ligase LigA [Acinetobacter haemolyticus ATCC 19194] gi|292824577|gb|EFF83359.1| NAD-dependent DNA ligase LigA [Acinetobacter haemolyticus ATCC 19194] Length = 675 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 21/50 (42%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I G+G R+L +F T+ + + E+L + A I + F Sbjct: 521 GIRGVGETTARMLANTFQTLDALKAADVESLKKTPDVGDITAEWIADFFQ 570 >gi|289165264|ref|YP_003455402.1| DNA ligase [Legionella longbeachae NSW150] gi|288858437|emb|CBJ12315.1| DNA ligase [Legionella longbeachae NSW150] Length = 671 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%) Query: 550 KKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 KK S I IG R+L + FG ++ IS ++ L S+E + A I + Sbjct: 507 KKTTLSRFLYALGIREIGEASARVLAEHFGDIEAISNATEADLMSLEDMGPVGAANIVHF 566 Query: 607 F 607 F Sbjct: 567 F 567 >gi|288556390|ref|YP_003428325.1| excinuclease ABC C subunit domain-containing protein [Bacillus pseudofirmus OF4] gi|288547550|gb|ADC51433.1| Excinuclease ABC C subunit domain protein [Bacillus pseudofirmus OF4] Length = 118 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G++ + +L+VGKA L++RIK + ++ ++ I + V Sbjct: 39 GIFMFYNDKKELLFVGKARKLRQRIKKHFEDTVSPIKVHR--DEVAKIDVCIIEDPVHRE 96 Query: 71 LLEANMIKRLKPRFNI 86 + E +I LK ++N+ Sbjct: 97 IYETYIINELKAKYNV 112 >gi|270159993|ref|ZP_06188649.1| DNA ligase [Legionella longbeachae D-4968] gi|269988332|gb|EEZ94587.1| DNA ligase [Legionella longbeachae D-4968] Length = 671 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%) Query: 550 KKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 KK S I IG R+L + FG ++ IS ++ L S+E + A I + Sbjct: 507 KKTTLSRFLYALGIREIGEASARVLAEHFGDIEAISNATEADLMSLEDMGPVGAANIVHF 566 Query: 607 F 607 F Sbjct: 567 F 567 >gi|229083590|ref|ZP_04215919.1| DNA ligase [Bacillus cereus Rock3-44] gi|228699722|gb|EEL52378.1| DNA ligase [Bacillus cereus Rock3-44] Length = 669 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 25/53 (47%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R L + F T+ ++ +++ E L I I +K+A I +F Sbjct: 512 GIRHVGAKAARTLAEHFETMDLLVKATEEELKEINEIGEKMAQSIVTYFDNED 564 >gi|226953496|ref|ZP_03823960.1| DNA ligase [Acinetobacter sp. ATCC 27244] gi|226835781|gb|EEH68164.1| DNA ligase [Acinetobacter sp. ATCC 27244] Length = 675 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 21/50 (42%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I G+G R+L +F T+ + + E+L + A I + F Sbjct: 521 GIRGVGETTARMLANTFQTLDALKAADVESLKKTPDVGDITAEWIADFFQ 570 >gi|154484656|ref|ZP_02027104.1| hypothetical protein EUBVEN_02373 [Eubacterium ventriosum ATCC 27560] gi|149734504|gb|EDM50421.1| hypothetical protein EUBVEN_02373 [Eubacterium ventriosum ATCC 27560] Length = 655 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Query: 559 EINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I IG +L+ ++F ++ I +S E L I+GI + +A K +F + Sbjct: 496 GIPNIGSANAKLICKAFNNNIEKIRNASVEELIEIDGIGEIMAEKFCQYFADEDN 550 >gi|322388003|ref|ZP_08061610.1| competence protein CelA [Streptococcus infantis ATCC 700779] gi|321141276|gb|EFX36774.1| competence protein CelA [Streptococcus infantis ATCC 700779] Length = 213 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 2/56 (3%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 KA+ L ++ G+G R + ++ + S + L + GI K K+ + Sbjct: 156 KASLEELKQVKGLGAKRAQDIIDHRESNGKFK--SVDELKKVSGIGAKTIEKLKEY 209 Score = 37.8 bits (86), Expect = 5.6, Method: Composition-based stats. Identities = 8/27 (29%), Positives = 16/27 (59%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 ++++S E L ++G+ K A I +H Sbjct: 153 NLNKASLEELKQVKGLGAKRAQDIIDH 179 >gi|226356158|ref|YP_002785898.1| DNA ligase (NAD(+)) [Deinococcus deserti VCD115] gi|254778151|sp|C1CVC7|DNLJ2_DEIDV RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 2 gi|226318148|gb|ACO46144.1| putative DNA ligase (NAD(+)) [Deinococcus deserti VCD115] Length = 686 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 24/45 (53%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + L ++FG++ + R++PE + ++ G+ K A + Sbjct: 524 VGERNAQALARAFGSLDALLRATPEQIEAVPGMGKVTAVSVSAAL 568 >gi|15790649|ref|NP_280473.1| 50S ribosomal protein L32e [Halobacterium sp. NRC-1] gi|169236388|ref|YP_001689588.1| 50S ribosomal protein L32e [Halobacterium salinarum R1] gi|13431823|sp|Q9HPB7|RL32_HALSA RecName: Full=50S ribosomal protein L32e; AltName: Full=HL5 gi|10581176|gb|AAG19953.1| 50S ribosomal protein L32E [Halobacterium sp. NRC-1] gi|167727454|emb|CAP14242.1| ribosomal protein L32.eR [Halobacterium salinarum R1] Length = 239 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L +I+G+GP + L ++ F +V + + LA +GI +A +I Sbjct: 10 ELADISGVGPSKAEALAEAGFESVADVQAADQSELAEADGIGNALAARIKA 60 >gi|294813204|ref|ZP_06771847.1| DNA integrity scanning protein disA [Streptomyces clavuligerus ATCC 27064] gi|326441684|ref|ZP_08216418.1| DNA integrity scanning protein DisA [Streptomyces clavuligerus ATCC 27064] gi|294325803|gb|EFG07446.1| DNA integrity scanning protein disA [Streptomyces clavuligerus ATCC 27064] Length = 383 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 20/40 (50%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ FG ++ + +S + L +++G+ + A + Sbjct: 331 IERLVEHFGGLQKLLAASVDDLQAVDGVGEARARSVREGL 370 >gi|320010088|gb|ADW04938.1| DNA integrity scanning, DisA, linker region [Streptomyces flavogriseus ATCC 33331] Length = 374 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 20/40 (50%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ FG ++ + +S + L +++G+ + A + Sbjct: 322 IERLVEHFGGLQKLLAASVDDLQAVDGVGEARARSVREGL 361 >gi|297192897|ref|ZP_06910295.1| DNA integrity scanning protein disA [Streptomyces pristinaespiralis ATCC 25486] gi|197722614|gb|EDY66522.1| DNA integrity scanning protein disA [Streptomyces pristinaespiralis ATCC 25486] Length = 374 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 20/40 (50%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ FG ++ + +S + L +++G+ + A + Sbjct: 322 IERLVEHFGGLQKLLAASVDDLQAVDGVGEARARSVREGL 361 >gi|320014458|gb|ADV98029.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 670 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 20/48 (41%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +G L F T+ + + ETL S+ + + +A + N + Sbjct: 520 VGEATAANLAAHFRTLDNLRAADIETLKSVPDVGEVVAKHVMNFLSEE 567 >gi|294504743|ref|YP_003568805.1| DNA ligase [Yersinia pestis Z176003] gi|262362805|gb|ACY59526.1| DNA ligase [Yersinia pestis D106004] gi|262366729|gb|ACY63286.1| DNA ligase [Yersinia pestis D182038] gi|294355202|gb|ADE65543.1| DNA ligase [Yersinia pestis Z176003] Length = 656 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 20/48 (41%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +G L F T+ + + ETL S+ + + +A + N + Sbjct: 506 VGEATAANLAAHFRTLDNLRAADIETLKSVPDVGEVVAKHVMNFLSEE 553 >gi|220904693|ref|YP_002480005.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|254781312|sp|B8J0Q0|DNLJ_DESDA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|219868992|gb|ACL49327.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 712 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 S L I +G R L F T+ + + ETL S+ + ++A I+N F+ Sbjct: 538 RLISAL-GIRHVGEQTARTLALHFETLDELENAGAETLLSLPDVGPEVASSIHNFFN 593 >gi|162448184|ref|YP_001621316.1| DNA ligase [Acholeplasma laidlawii PG-8A] gi|190359222|sp|A9NHW0|DNLJ_ACHLI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|161986291|gb|ABX81940.1| DNA ligase, NAD-dependent [Acholeplasma laidlawii PG-8A] Length = 659 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 25/55 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G + LL + ++ +++ + E L I I +IA + +F ++ Sbjct: 507 GIKNVGAKVAKTLLNHYPSITLLADAKYEDLIQIPDIGPEIADSVTTYFSNESNQ 561 >gi|254373281|ref|ZP_04988769.1| hypothetical protein FTCG_00864 [Francisella tularensis subsp. novicida GA99-3549] gi|151571007|gb|EDN36661.1| hypothetical protein FTCG_00864 [Francisella novicida GA99-3549] Length = 678 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +G + L FG+++ + E L I I + +A I + +H + Sbjct: 526 GIKDVGEVSSEALANHFGSLESFREAKFEQLIEINDIGEIMANNIVSFWHDS 577 >gi|51597030|ref|YP_071221.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis IP 32953] gi|186896113|ref|YP_001873225.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis PB1/+] gi|81638946|sp|Q668M6|DNLJ_YERPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781913|sp|B2K917|DNLJ_YERPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|51590312|emb|CAH21949.1| DNA ligase [Yersinia pseudotuberculosis IP 32953] gi|186699139|gb|ACC89768.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis PB1/+] Length = 670 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 20/48 (41%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +G L F T+ + + ETL S+ + + +A + N + Sbjct: 520 VGEATAANLAAHFRTLDNLRAADIETLKSVPDVGEVVAKHVMNFLSEE 567 >gi|153948204|ref|YP_001400300.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis IP 31758] gi|170023674|ref|YP_001720179.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis YPIII] gi|190359300|sp|A7FGC2|DNLJ_YERP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781915|sp|B1JFZ0|DNLJ_YERPY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|152959699|gb|ABS47160.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis IP 31758] gi|169750208|gb|ACA67726.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis YPIII] Length = 670 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 20/48 (41%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +G L F T+ + + ETL S+ + + +A + N + Sbjct: 520 VGEATAANLAAHFRTLDNLRAADIETLKSVPDVGEVVAKHVMNFLSEE 567 >gi|22125389|ref|NP_668812.1| NAD-dependent DNA ligase LigA [Yersinia pestis KIM 10] gi|45442391|ref|NP_993930.1| NAD-dependent DNA ligase LigA [Yersinia pestis biovar Microtus str. 91001] gi|108808172|ref|YP_652088.1| NAD-dependent DNA ligase LigA [Yersinia pestis Antiqua] gi|108811556|ref|YP_647323.1| NAD-dependent DNA ligase LigA [Yersinia pestis Nepal516] gi|145599373|ref|YP_001163449.1| NAD-dependent DNA ligase LigA [Yersinia pestis Pestoides F] gi|149365146|ref|ZP_01887181.1| DNA ligase [Yersinia pestis CA88-4125] gi|162420672|ref|YP_001607138.1| NAD-dependent DNA ligase LigA [Yersinia pestis Angola] gi|165926903|ref|ZP_02222735.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str. F1991016] gi|165940356|ref|ZP_02228875.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str. IP275] gi|166011271|ref|ZP_02232169.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str. E1979001] gi|166212520|ref|ZP_02238555.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str. B42003004] gi|167398917|ref|ZP_02304441.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421338|ref|ZP_02313091.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424444|ref|ZP_02316197.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470665|ref|ZP_02335369.1| DNA ligase, NAD-dependent [Yersinia pestis FV-1] gi|218930038|ref|YP_002347913.1| NAD-dependent DNA ligase LigA [Yersinia pestis CO92] gi|229838581|ref|ZP_04458740.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895648|ref|ZP_04510819.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Pestoides A] gi|229899147|ref|ZP_04514290.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis str. India 195] gi|229901826|ref|ZP_04516947.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Nepal516] gi|270490015|ref|ZP_06207089.1| DNA ligase (NAD(+)) [Yersinia pestis KIM D27] gi|122980211|sp|Q1CJV7|DNLJ_YERPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|123372308|sp|Q1C5X9|DNLJ_YERPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|123776939|sp|Q7CJF3|DNLJ_YERPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166216255|sp|A4TMG4|DNLJ_YERPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781914|sp|A9QZH0|DNLJ_YERPG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|21958274|gb|AAM85063.1|AE013752_4 DNA ligase [Yersinia pestis KIM 10] gi|45437255|gb|AAS62807.1| DNA ligase [Yersinia pestis biovar Microtus str. 91001] gi|108775204|gb|ABG17723.1| DNA ligase [Yersinia pestis Nepal516] gi|108780085|gb|ABG14143.1| DNA ligase [Yersinia pestis Antiqua] gi|115348649|emb|CAL21593.1| DNA ligase [Yersinia pestis CO92] gi|145211069|gb|ABP40476.1| DNA ligase [Yersinia pestis Pestoides F] gi|149291559|gb|EDM41633.1| DNA ligase [Yersinia pestis CA88-4125] gi|162353487|gb|ABX87435.1| DNA ligase, NAD-dependent [Yersinia pestis Angola] gi|165911711|gb|EDR30369.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str. IP275] gi|165921254|gb|EDR38478.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str. F1991016] gi|165989949|gb|EDR42250.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str. E1979001] gi|166206451|gb|EDR50931.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str. B42003004] gi|166960827|gb|EDR56848.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051421|gb|EDR62829.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056326|gb|EDR66095.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229680722|gb|EEO76817.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Nepal516] gi|229687549|gb|EEO79622.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis str. India 195] gi|229694947|gb|EEO84994.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701454|gb|EEO89482.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Pestoides A] gi|270338519|gb|EFA49296.1| DNA ligase (NAD(+)) [Yersinia pestis KIM D27] Length = 670 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 20/48 (41%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +G L F T+ + + ETL S+ + + +A + N + Sbjct: 520 VGEATAANLAAHFRTLDNLRAADIETLKSVPDVGEVVAKHVMNFLSEE 567 >gi|33322704|gb|AAQ07086.1|AF496399_1 DNA ligase [Lactobacillus delbrueckii subsp. lactis] Length = 116 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 27/54 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I+ +G +L+ Q F + I+ +S + L +I+ I IA + +F + + Sbjct: 11 GIDNVGRKAAQLIAQKFKNMSKIASASVQELTAIDTIGMTIAESLTAYFQQEEA 64 >gi|317121135|ref|YP_004101138.1| DNA ligase, NAD-dependent [Thermaerobacter marianensis DSM 12885] gi|315591115|gb|ADU50411.1| DNA ligase, NAD-dependent [Thermaerobacter marianensis DSM 12885] Length = 764 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%) Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 AI R R + L I +G +L + FGT+ + + P L ++ I +IA Sbjct: 520 AIDASRARPLRRLLYGL-GIRFVGERVAGVLARHFGTIHRVMEAEPAELMAVPEIGPRIA 578 Query: 601 CKIYNHFHKN 610 + F Sbjct: 579 ESVAAFFRDE 588 >gi|227530245|ref|ZP_03960294.1| DNA ligase (NAD(+)) [Lactobacillus vaginalis ATCC 49540] gi|227349834|gb|EEJ40125.1| DNA ligase (NAD(+)) [Lactobacillus vaginalis ATCC 49540] Length = 680 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G RL++ F + + +S + +++++GI I + +F Sbjct: 523 GIRHVGAKAARLIMAHFNDLDQLMGASADEISAVDGIGPTIGESVETYFANEQ 575 >gi|172040410|ref|YP_001800124.1| NAD-dependent DNA ligase LigA [Corynebacterium urealyticum DSM 7109] gi|254781300|sp|B1VG01|DNLJ_CORU7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|171851714|emb|CAQ04690.1| DNA ligase [Corynebacterium urealyticum DSM 7109] Length = 712 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 27/49 (55%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP + L +G++ ++ + ET+++++G+ IA + + F Sbjct: 541 SIRHVGPTAAKALANHYGSIPDVAAADVETMSTVDGVGPIIAESVRDWF 589 >gi|158522455|ref|YP_001530325.1| DNA protecting protein DprA [Desulfococcus oleovorans Hxd3] gi|158511281|gb|ABW68248.1| DNA protecting protein DprA [Desulfococcus oleovorans Hxd3] Length = 389 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 26/50 (52%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 L + G+G L + L+ FG+ + + ++ L ++GIS +A I H Sbjct: 10 LKSVPGVGNLLFKRLIDRFGSPEKVLSAARSDLLGVQGISDTLASAIRAH 59 >gi|85859097|ref|YP_461299.1| DNA repair protein [Syntrophus aciditrophicus SB] gi|85722188|gb|ABC77131.1| DNA repair protein [Syntrophus aciditrophicus SB] Length = 308 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 7/54 (12%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIA---CKIYN----HFHKNTSHTP 615 + LL+ FG++K I + E L ++ GIS A + + + P Sbjct: 130 KDLLERFGSLKGIMDAELEELTAVRGISAHAAGLVRMVKEMSALYLQEKAREKP 183 >gi|89256066|ref|YP_513428.1| DNA ligase [Francisella tularensis subsp. holarctica LVS] gi|167009870|ref|ZP_02274801.1| DNA ligase [Francisella tularensis subsp. holarctica FSC200] gi|254367402|ref|ZP_04983428.1| DNA ligase [Francisella tularensis subsp. holarctica 257] gi|123401612|sp|Q2A4C4|DNLJ_FRATH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|89143897|emb|CAJ79115.1| DNA ligase [Francisella tularensis subsp. holarctica LVS] gi|134253218|gb|EBA52312.1| DNA ligase [Francisella tularensis subsp. holarctica 257] Length = 678 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I IG + L FG+++ + E L I I + IA I + +H + Sbjct: 526 GIKDIGEVSSDALANHFGSLESFRDAKFEELIEINYIGEIIANNIVSFWHDS 577 >gi|300087757|ref|YP_003758279.1| DNA ligase, NAD-dependent [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527490|gb|ADJ25958.1| DNA ligase, NAD-dependent [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 687 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 29/51 (56%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I IG + L + FG++ ++++S E L SI GI KIA + N+F + Sbjct: 522 GIRHIGAENAQSLAREFGSLSELAKASLERLISIPGIGVKIADSMLNYFSE 572 >gi|187477571|ref|YP_785595.1| DNA ligase [Bordetella avium 197N] gi|123752160|sp|Q2KUU5|DNLJ_BORA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|115422157|emb|CAJ48681.1| DNA ligase [Bordetella avium 197N] Length = 695 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 21/51 (41%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G R + + FG + I + L ++ + +A I+ F + Sbjct: 544 GIRHVGETTARDVARHFGNIDAIMDADEAALLAVPDVGPVVAGSIHRFFQE 594 >gi|261207706|ref|ZP_05922391.1| competence protein ComEA [Enterococcus faecium TC 6] gi|260078089|gb|EEW65795.1| competence protein ComEA [Enterococcus faecium TC 6] Length = 211 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 10/59 (16%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYNH 606 A S L +I GIG ++ + +++ F G+ + + E L I GI +K K+ N Sbjct: 155 ATPSELQQIPGIGSVKAQEIIR-FREENGSFQKV-----EDLQEISGIGEKTVEKLKNF 207 >gi|221195651|ref|ZP_03568705.1| DNA ligase, NAD-dependent [Atopobium rimae ATCC 49626] gi|221184417|gb|EEE16810.1| DNA ligase, NAD-dependent [Atopobium rimae ATCC 49626] Length = 706 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 25/49 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G LL Q F +++ + ++ E +A+I G+ K+A I F Sbjct: 547 GIRHVGANMAALLAQYFHSIQELQLATEEQMAAISGVGPKMAKSIKEFF 595 >gi|319892647|ref|YP_004149522.1| Late competence protein ComEA, DNA receptor [Staphylococcus pseudintermedius HKU10-03] gi|317162343|gb|ADV05886.1| Late competence protein ComEA, DNA receptor [Staphylococcus pseudintermedius HKU10-03] gi|323464315|gb|ADX76468.1| ComE operon protein 1, putative [Staphylococcus pseudintermedius ED99] Length = 222 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 14/58 (24%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L +I GIGP + + +++ F +V E L +++GI +K K+ N+ Sbjct: 171 ELTQIPGIGPSKAQTIIKHREENGPFQSV--------EDLKNVKGIGEKTFEKLKNYL 220 >gi|117927438|ref|YP_871989.1| DNA integrity scanning protein DisA [Acidothermus cellulolyticus 11B] gi|226729430|sp|A0LRE3|DISA_ACIC1 RecName: Full=DNA integrity scanning protein disA gi|117647901|gb|ABK52003.1| protein of unknown function DUF147 [Acidothermus cellulolyticus 11B] Length = 368 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 21/40 (52%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ FGT++ + +S + L ++EG+ + A + Sbjct: 316 IERLVEHFGTLQKLLAASVDDLQAVEGVGESRARSVREGL 355 >gi|213024616|ref|ZP_03339063.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 130 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 22/42 (52%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 L FGT++ + ++ + L + + +A ++N F + ++ Sbjct: 5 LAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 46 >gi|156502078|ref|YP_001428143.1| DNA ligase [Francisella tularensis subsp. holarctica FTNF002-00] gi|290954221|ref|ZP_06558842.1| DNA ligase [Francisella tularensis subsp. holarctica URFT1] gi|295312341|ref|ZP_06803126.1| DNA ligase [Francisella tularensis subsp. holarctica URFT1] gi|166214810|sp|A7NB34|DNLJ_FRATF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|156252681|gb|ABU61187.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. holarctica FTNF002-00] Length = 678 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I IG + L FG+++ + E L I I + IA I + +H + Sbjct: 526 GIKDIGEVSSDALANHFGSLESFRDAKFEELIEINYIGEIIANNIVSFWHDS 577 >gi|3297891|emb|CAA05781.1| nucleotide repair protein [Lilium longiflorum] Length = 278 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 21/35 (60%) Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 FG++ I +S E LA GI ++ ++++ FH+ Sbjct: 189 FGSLSGIMDASLEDLARCPGIGERKVKRLHDTFHE 223 >gi|322392095|ref|ZP_08065557.1| competence protein CelA [Streptococcus peroris ATCC 700780] gi|321144995|gb|EFX40394.1| competence protein CelA [Streptococcus peroris ATCC 700780] Length = 213 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 2/56 (3%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 KA+ L ++ G+G R + ++ + S + L + GI K K+ + Sbjct: 156 KASLEELKQVKGLGAKRAQDIIDHRESNGKFK--SVDDLKKVSGIGAKTIEKLKEY 209 Score = 38.2 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 8/27 (29%), Positives = 16/27 (59%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 ++++S E L ++G+ K A I +H Sbjct: 153 NLNKASLEELKQVKGLGAKRAQDIIDH 179 >gi|156973609|ref|YP_001444516.1| NAD-dependent DNA ligase LigA [Vibrio harveyi ATCC BAA-1116] gi|166216277|sp|A7MT54|DNLJ_VIBHB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|156525203|gb|ABU70289.1| hypothetical protein VIBHAR_01312 [Vibrio harveyi ATCC BAA-1116] Length = 670 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 21/52 (40%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L Q F + I +++ E L ++ I +A I F + + Sbjct: 521 VGEATAANLAQYFKNLDAIQQATEEQLIEVQDIGVIVAKHITTFFGEEKNQA 572 >gi|150025890|ref|YP_001296716.1| DNA ligase (NAD+) [Flavobacterium psychrophilum JIP02/86] gi|166215404|sp|A6H0N9|DNLJ_FLAPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|149772431|emb|CAL43913.1| DNA ligase (NAD+) [Flavobacterium psychrophilum JIP02/86] Length = 666 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 21/50 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + L + + + I+ ++ L ++ I KIA + F + Sbjct: 515 VGETVAKKLAKHYKNIDAIANANLLELVMVDEIGDKIAQSVVEFFDNQEN 564 >gi|149002299|ref|ZP_01827241.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP14-BS69] gi|147759614|gb|EDK66605.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP14-BS69] Length = 61 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 6/44 (13%), Positives = 19/44 (43%), Gaps = 1/44 (2%) Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615 ++ F ++ I +S + + + G+ + +A + + P Sbjct: 1 MKHFKSLTKIKEASVDEIVEV-GVPRVVAEAVQRKLNPQGEALP 43 >gi|331002925|ref|ZP_08326438.1| DNA ligase [Lachnospiraceae oral taxon 107 str. F0167] gi|330413218|gb|EGG92592.1| DNA ligase [Lachnospiraceae oral taxon 107 str. F0167] Length = 650 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 11/86 (12%) Query: 528 YFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGT-VKMISRSSP 586 I + DEA H + YS I GIG +++ + F + I +S Sbjct: 475 KLIAAI-DEA------RHTN-MARFLYS--LGITGIGSANAKMIARYFDNDLDRIINASK 524 Query: 587 ETLASIEGISKKIACKIYNHFHKNTS 612 + L IEGI + +A I F + Sbjct: 525 DDLLEIEGIGEVLANSIVEFFGNEKN 550 >gi|237785838|ref|YP_002906543.1| NAD-dependent DNA ligase LigA [Corynebacterium kroppenstedtii DSM 44385] gi|237758750|gb|ACR18000.1| DNA ligase [Corynebacterium kroppenstedtii DSM 44385] Length = 686 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L +G+++ I +S E LA I+G+ IA + + F Sbjct: 527 SIRHVGPTAARALATKYGSLEAIRSASEEELARIDGVGSIIAASLCSWF 575 >gi|312136909|ref|YP_004004246.1| dead/deah box helicase domain protein [Methanothermus fervidus DSM 2088] gi|311224628|gb|ADP77484.1| DEAD/DEAH box helicase domain protein [Methanothermus fervidus DSM 2088] Length = 668 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 + G+G R R + FG I+ S + L +EGI K+A I F Sbjct: 622 VKGLGRRRARKIFNMFG--DDIASVSEKELQKVEGIGPKLASAIKKAFR 668 >gi|325121133|gb|ADY80656.1| DNA ligase [Acinetobacter calcoaceticus PHEA-2] Length = 679 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I G+G R+L +F T++ + + E L + A I + F Sbjct: 521 GIRGVGETTARMLANTFQTLEALKAADVEALKKTPDVGDITAEWIADFF 569 >gi|325294733|ref|YP_004281247.1| PHP domain protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065181|gb|ADY73188.1| PHP domain protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 574 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 5/54 (9%) Query: 556 PLDEINGIGPLRKRLLLQSFG--TVKMISRSSPE--TLASIEGISKKIACKIYN 605 L +I G+GP +LL ++ G +V+ + R+ E L + G K KI Sbjct: 92 SLLDIPGVGPKTVKLLYETLGIRSVEDLKRA-IEKGELLKLPGFGLKKVEKIKK 144 >gi|299771367|ref|YP_003733393.1| DNA ligase, NAD-dependent [Acinetobacter sp. DR1] gi|298701455|gb|ADI92020.1| DNA ligase, NAD-dependent [Acinetobacter sp. DR1] Length = 679 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I G+G R+L +F T++ + + E L + A I + F Sbjct: 521 GIRGVGETTARMLANTFQTLEALKAADVEALKKTPDVGDITAEWIADFF 569 >gi|293609092|ref|ZP_06691395.1| DNA ligase [Acinetobacter sp. SH024] gi|292829665|gb|EFF88027.1| DNA ligase [Acinetobacter sp. SH024] Length = 679 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I G+G R+L +F T++ + + E L + A I + F Sbjct: 521 GIRGVGETTARMLANTFQTLEALKAADVEALKKTPDVGDITAEWIADFF 569 >gi|290508381|ref|ZP_06547752.1| DNA ligase, NAD-dependent [Klebsiella sp. 1_1_55] gi|289777775|gb|EFD85772.1| DNA ligase, NAD-dependent [Klebsiella sp. 1_1_55] Length = 671 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 21/39 (53%) Query: 574 SFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 FGT++ + ++S E L + + +A +N F + ++ Sbjct: 531 HFGTLEALEQASIEELQKVPDVGIVVATHTFNFFAEESN 569 >gi|262280095|ref|ZP_06057880.1| DNA ligase [Acinetobacter calcoaceticus RUH2202] gi|262260446|gb|EEY79179.1| DNA ligase [Acinetobacter calcoaceticus RUH2202] Length = 692 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I G+G R+L +F T++ + + E L + A I + F Sbjct: 534 GIRGVGETTARMLANTFQTLEALKAADVEALKKTPDVGDITAEWIADFF 582 >gi|256617609|ref|ZP_05474455.1| NAD-dependent DNA ligase [Enterococcus faecalis ATCC 4200] gi|257089149|ref|ZP_05583510.1| NAD-dependent DNA ligase [Enterococcus faecalis CH188] gi|312904259|ref|ZP_07763421.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0635] gi|256597136|gb|EEU16312.1| NAD-dependent DNA ligase [Enterococcus faecalis ATCC 4200] gi|256997961|gb|EEU84481.1| NAD-dependent DNA ligase [Enterococcus faecalis CH188] gi|310632355|gb|EFQ15638.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0635] gi|315578805|gb|EFU90996.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0630] Length = 676 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 27/53 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G ++L + FG + +SR++ E + +++ I + IA + +F Sbjct: 516 GIRHVGAKAAKILAEHFGDLSTLSRATAEEIVALDSIGETIADSVVTYFENEE 568 >gi|227517688|ref|ZP_03947737.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0104] gi|257083650|ref|ZP_05578011.1| NAD-dependent DNA ligase [Enterococcus faecalis Fly1] gi|227074843|gb|EEI12806.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0104] gi|256991680|gb|EEU78982.1| NAD-dependent DNA ligase [Enterococcus faecalis Fly1] gi|315146961|gb|EFT90977.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX4244] Length = 676 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 27/53 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G ++L + FG + +SR++ E + +++ I + IA + +F Sbjct: 516 GIRHVGAKAAKILAEHFGDLSTLSRATAEEIVALDSIGETIADSVVTYFENEE 568 >gi|213691626|ref|YP_002322212.1| DNA ligase, NAD-dependent [Bifidobacterium longum subsp. infantis ATCC 15697] gi|254781260|sp|B7GPV4|DNLJ_BIFLI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|213523087|gb|ACJ51834.1| DNA ligase, NAD-dependent [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457713|dbj|BAJ68334.1| DNA ligase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 921 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 27/45 (60%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +GP RL+ + G++ I +++ E L +I+G+ +IA + N F Sbjct: 764 LGPPTARLIASAMGSLAAIEKATIEDLTAIDGVGPEIAESVVNWF 808 >gi|206579402|ref|YP_002237241.1| DNA ligase, NAD-dependent [Klebsiella pneumoniae 342] gi|288934177|ref|YP_003438236.1| DNA ligase, NAD-dependent [Klebsiella variicola At-22] gi|254781350|sp|B5XVT4|DNLJ_KLEP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|206568460|gb|ACI10236.1| DNA ligase, NAD-dependent [Klebsiella pneumoniae 342] gi|288888906|gb|ADC57224.1| DNA ligase, NAD-dependent [Klebsiella variicola At-22] Length = 671 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 21/39 (53%) Query: 574 SFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 FGT++ + ++S E L + + +A +N F + ++ Sbjct: 531 HFGTLEALEQASIEELQKVPDVGIVVATHTFNFFAEESN 569 >gi|307289585|ref|ZP_07569529.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0109] gi|306499399|gb|EFM68772.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0109] gi|315164584|gb|EFU08601.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX1302] Length = 676 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 27/53 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G ++L + FG + +SR++ E + +++ I + IA + +F Sbjct: 516 GIRHVGAKAAKILAEHFGDLSTLSRATAEEIVALDSIGETIADSVVTYFENEE 568 >gi|109689248|dbj|BAE96778.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|109689250|dbj|BAE96779.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|109689252|dbj|BAE96780.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|109689254|dbj|BAE96781.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] Length = 319 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Query: 559 EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606 ++ G+GP + L+++ + T++ I+ ++P+ ++ GI A KI + Sbjct: 13 DLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVDA 61 >gi|109689236|dbj|BAE96772.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] Length = 319 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Query: 559 EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606 ++ G+GP + L+++ + T++ I+ ++P+ ++ GI A KI + Sbjct: 13 DLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVDA 61 >gi|29126622|ref|NP_803525.1| orf325 [Monoblepharella sp. JEL15] gi|29029520|gb|AAO64970.1| orf325 [Monoblepharella sp. JEL15] Length = 325 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN 42 + PGVY GR YVG++ +L R+ SY + Sbjct: 51 DSPGVYYFKGPDGRD-YVGRSMSLYNRVTSYFMPS 84 >gi|18182001|dbj|BAB83908.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] Length = 319 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Query: 559 EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606 ++ G+GP + L+++ + T++ I+ ++P+ ++ GI A KI + Sbjct: 13 DLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVDA 61 >gi|14600463|ref|NP_146978.1| DNA repair and recombination protein RadA [Aeropyrum pernix K1] gi|13878703|sp|Q9YFY1|RADA_AERPE RecName: Full=DNA repair and recombination protein radA gi|5103509|dbj|BAA79030.1| DNA repair and recombination protein RadA [Aeropyrum pernix K1] Length = 319 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Query: 559 EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606 ++ G+GP + L+++ + T++ I+ ++P+ ++ GI A KI + Sbjct: 13 DLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVDA 61 >gi|18181987|dbj|BAB83901.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] Length = 319 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Query: 559 EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606 ++ G+GP + L+++ + T++ I+ ++P+ ++ GI A KI + Sbjct: 13 DLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVDA 61 >gi|18181991|dbj|BAB83903.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] Length = 319 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Query: 559 EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606 ++ G+GP + L+++ + T++ I+ ++P+ ++ GI A KI + Sbjct: 13 DLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVDA 61 >gi|18181985|dbj|BAB83900.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|18181995|dbj|BAB83905.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|18181997|dbj|BAB83906.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|18181999|dbj|BAB83907.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|18182003|dbj|BAB83909.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|18182005|dbj|BAB83910.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|109689234|dbj|BAE96771.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|109689238|dbj|BAE96773.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|109689240|dbj|BAE96774.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|109689242|dbj|BAE96775.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|109689244|dbj|BAE96776.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|109689246|dbj|BAE96777.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] Length = 319 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Query: 559 EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606 ++ G+GP + L+++ + T++ I+ ++P+ ++ GI A KI + Sbjct: 13 DLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVDA 61 >gi|18181993|dbj|BAB83904.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] Length = 319 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Query: 559 EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606 ++ G+GP + L+++ + T++ I+ ++P+ ++ GI A KI + Sbjct: 13 DLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVDA 61 >gi|27904863|ref|NP_777989.1| putative 5'-3' exonuclease [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|38372206|sp|Q89AD1|EX53_BUCBP RecName: Full=5'-3' exonuclease gi|27904261|gb|AAO27094.1| putative 5'-3' exonuclease [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 302 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 7/54 (12%) Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 D I G+ G +LL++FG+++ I + I K A IYN+ H Sbjct: 189 DNIPGVPTVGKKTALILLKTFGSLENIYN----NIEKIPKCLIKKAKTIYNNLH 238 >gi|332162521|ref|YP_004299098.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606605|emb|CBY28103.1| DNA ligase [Yersinia enterocolitica subsp. palearctica Y11] gi|325666751|gb|ADZ43395.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860741|emb|CBX71032.1| DNA ligase [Yersinia enterocolitica W22703] Length = 672 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 19/48 (39%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +G L F ++ + + E L S+ + + +A + N + Sbjct: 520 VGEATAANLAAHFRNLENLRAADIEALKSVPDVGEVVAKHVVNFLGEE 567 >gi|317481657|ref|ZP_07940691.1| DNA ligase [Bifidobacterium sp. 12_1_47BFAA] gi|316916889|gb|EFV38277.1| DNA ligase [Bifidobacterium sp. 12_1_47BFAA] Length = 920 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 26/45 (57%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +GP RL+ + G++ I ++ E L +I+G+ +IA + N F Sbjct: 764 LGPPTARLIASAMGSLAAIENATIEDLTAIDGVGPEIAESVVNWF 808 >gi|296454555|ref|YP_003661698.1| DNA ligase [Bifidobacterium longum subsp. longum JDM301] gi|296183986|gb|ADH00868.1| DNA ligase, NAD-dependent [Bifidobacterium longum subsp. longum JDM301] Length = 920 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 26/45 (57%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +GP RL+ + G++ I ++ E L +I+G+ +IA + N F Sbjct: 764 LGPPTARLIASAMGSLAAIENATIEDLTAIDGVGPEIAESVVNWF 808 >gi|322689624|ref|YP_004209358.1| DNA ligase [Bifidobacterium longum subsp. infantis 157F] gi|322691585|ref|YP_004221155.1| DNA ligase [Bifidobacterium longum subsp. longum JCM 1217] gi|291516189|emb|CBK69805.1| DNA ligase, NAD-dependent [Bifidobacterium longum subsp. longum F8] gi|320456441|dbj|BAJ67063.1| DNA ligase [Bifidobacterium longum subsp. longum JCM 1217] gi|320460960|dbj|BAJ71580.1| DNA ligase [Bifidobacterium longum subsp. infantis 157F] Length = 920 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 26/45 (57%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +GP RL+ + G++ I ++ E L +I+G+ +IA + N F Sbjct: 764 LGPPTARLIASAMGSLAAIENATIEDLTAIDGVGPEIAESVVNWF 808 >gi|227832930|ref|YP_002834637.1| DNA ligase [Corynebacterium aurimucosum ATCC 700975] gi|262182581|ref|ZP_06042002.1| NAD-dependent DNA ligase LigA [Corynebacterium aurimucosum ATCC 700975] gi|254781299|sp|C3PFU5|DNLJ_CORA7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|227453946|gb|ACP32699.1| DNA ligase [Corynebacterium aurimucosum ATCC 700975] Length = 674 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 25/49 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP+ R L FG+++++ +S E LA +G+ IA F Sbjct: 519 SIRHVGPIAARALATRFGSMEVLRAASVEELADTDGVGTIIAESFKQWF 567 >gi|227546782|ref|ZP_03976831.1| DNA ligase (NAD(+)) [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212744|gb|EEI80625.1| DNA ligase (NAD(+)) [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 920 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 26/45 (57%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +GP RL+ + G++ I ++ E L +I+G+ +IA + N F Sbjct: 764 LGPPTARLIASAMGSLAAIENATIEDLTAIDGVGPEIAESVVNWF 808 >gi|239620760|ref|ZP_04663791.1| LigA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312132368|ref|YP_003999707.1| lig [Bifidobacterium longum subsp. longum BBMN68] gi|239516336|gb|EEQ56203.1| LigA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|311772424|gb|ADQ01912.1| Lig [Bifidobacterium longum subsp. longum BBMN68] Length = 920 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 26/45 (57%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +GP RL+ + G++ I ++ E L +I+G+ +IA + N F Sbjct: 764 LGPPTARLIASAMGSLAAIENATIEDLTAIDGVGPEIAESVVNWF 808 >gi|123441550|ref|YP_001005536.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166216254|sp|A1JLA4|DNLJ_YERE8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|122088511|emb|CAL11304.1| DNA ligase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 672 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 19/48 (39%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +G L F ++ + + E L S+ + + +A + N + Sbjct: 520 VGEATAANLAAHFRNLENLRAADIEALKSVPDVGEVVAKHVVNFLGEE 567 >gi|23464680|ref|NP_695283.1| LigA [Bifidobacterium longum NCC2705] gi|81754681|sp|Q8G830|DNLJ_BIFLO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|23325242|gb|AAN23919.1| LigA [Bifidobacterium longum NCC2705] Length = 920 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 26/45 (57%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +GP RL+ + G++ I ++ E L +I+G+ +IA + N F Sbjct: 764 LGPPTARLIASAMGSLAAIENATIEDLTAIDGVGPEIAESVVNWF 808 >gi|23336066|ref|ZP_00121295.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II) [Bifidobacterium longum DJO10A] gi|189438929|ref|YP_001954010.1| NAD-dependent DNA ligase [Bifidobacterium longum DJO10A] gi|254781259|sp|B3DPR8|DNLJ_BIFLD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|189427364|gb|ACD97512.1| NAD-dependent DNA ligase [Bifidobacterium longum DJO10A] Length = 920 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 26/45 (57%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +GP RL+ + G++ I ++ E L +I+G+ +IA + N F Sbjct: 764 LGPPTARLIASAMGSLAAIENATIEDLTAIDGVGPEIAESVVNWF 808 >gi|222151884|ref|YP_002561044.1| DNA ligase [Macrococcus caseolyticus JCSC5402] gi|254781362|sp|B9E830|DNLJ_MACCJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|222121013|dbj|BAH18348.1| DNA ligase [Macrococcus caseolyticus JCSC5402] Length = 663 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 25/53 (47%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G +L + FGT+ + ++ ETL I+ I +K+A + + Sbjct: 507 GIRHLGAKASMVLAREFGTMDNLKNATVETLTQIDDIGEKMAQSLVTYLQNED 559 >gi|86742328|ref|YP_482728.1| DNA ligase, NAD-dependent [Frankia sp. CcI3] gi|123750794|sp|Q2J6U3|DNLJ_FRASC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|86569190|gb|ABD12999.1| DNA ligase, NAD-dependent [Frankia sp. CcI3] Length = 706 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 28/49 (57%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L + +++ I+ +S E LA++EG+ KIA + + F Sbjct: 530 SIRHVGPTAARALARELRSLEAIAATSAEDLAAVEGVGPKIAGAVLDWF 578 >gi|270602175|ref|ZP_06221597.1| UvrABC system, protein C [Haemophilus influenzae HK1212] gi|270318196|gb|EFA29407.1| UvrABC system, protein C [Haemophilus influenzae HK1212] Length = 113 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 2/67 (2%) Query: 381 RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFS 440 R+E +D SH MG V VV + G +K+ YR+FN+ + DD A M L++R+ Sbjct: 3 RMECFDISHTMGNQTVASCVVFNQEGPLKSDYRRFNIEG--ITGGDDYAAMEQALQKRYE 60 Query: 441 QLIKNEE 447 + ++ ++ Sbjct: 61 RDLEEDK 67 >gi|262373317|ref|ZP_06066596.1| DNA ligase, NAD-dependent [Acinetobacter junii SH205] gi|262313342|gb|EEY94427.1| DNA ligase, NAD-dependent [Acinetobacter junii SH205] Length = 677 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 20/52 (38%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I G+G R+L +F T + ++ + L + A I + F Sbjct: 521 GIRGVGETTARMLANTFQTFDALKAANIDALKKTPDVGDITAEWIVDFFQAE 572 >gi|94984803|ref|YP_604167.1| DNA ligase, NAD-dependent [Deinococcus geothermalis DSM 11300] gi|122986680|sp|Q1J0I6|DNLJ_DEIGD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|94555084|gb|ABF44998.1| DNA ligase, NAD-dependent [Deinococcus geothermalis DSM 11300] Length = 684 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 27/49 (55%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 IN +G + L ++FGT+ + ++PE++ ++ G+ + IA + Sbjct: 531 GINHVGERNAQALARAFGTLDALLAATPESIEAVPGLGRTIAQSVSAAL 579 >gi|312173113|emb|CBX81368.1| DNA ligase [Erwinia amylovora ATCC BAA-2158] Length = 670 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 26/54 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I+ +G L FGT++ + + + L +++ + K +A + N + ++ Sbjct: 514 GISEVGEATAANLAAHFGTLEALMTADLDALMAVQDVGKVVASHVRNFLDEESN 567 >gi|312865342|ref|ZP_07725570.1| DNA ligase (NAD+) [Streptococcus downei F0415] gi|311099453|gb|EFQ57669.1| DNA ligase (NAD+) [Streptococcus downei F0415] Length = 673 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G + LL+ FG++ + + E +A I+G+ IA + ++F Sbjct: 523 GIRHVGAKASKQLLEKFGSLGQLMSAKFEAIADIDGLGAVIAQSLQDYF 571 >gi|292488952|ref|YP_003531839.1| DNA ligase [Erwinia amylovora CFBP1430] gi|292900089|ref|YP_003539458.1| DNA ligase [Erwinia amylovora ATCC 49946] gi|291199937|emb|CBJ47061.1| DNA ligase [Erwinia amylovora ATCC 49946] gi|291554386|emb|CBA21816.1| DNA ligase [Erwinia amylovora CFBP1430] Length = 670 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 26/54 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I+ +G L FGT++ + + + L +++ + K +A + N + ++ Sbjct: 514 GISEVGEATAANLAAHFGTLEALMTADLDALMAVQDVGKVVASHVRNFLDEESN 567 >gi|288941063|ref|YP_003443303.1| DNA ligase, NAD-dependent [Allochromatium vinosum DSM 180] gi|288896435|gb|ADC62271.1| DNA ligase, NAD-dependent [Allochromatium vinosum DSM 180] Length = 696 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 22/44 (50%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 +G +LL + G ++ + +S E L +I+GI +A I Sbjct: 521 VGETTAQLLAEHVGGIEALMAASVEDLVAIKGIGPVVAAHIVGF 564 >gi|300743918|ref|ZP_07072938.1| DNA ligase, NAD-dependent [Rothia dentocariosa M567] gi|300380279|gb|EFJ76842.1| DNA ligase, NAD-dependent [Rothia dentocariosa M567] Length = 740 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 25/45 (55%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +GP R L FG++ I+++ + LA+++G+ IA I F Sbjct: 583 VGPTAARALATEFGSMDAIAQADRDRLAAVDGVGGVIADSIIEWF 627 >gi|213962174|ref|ZP_03390438.1| DNA ligase, NAD-dependent [Capnocytophaga sputigena Capno] gi|213955180|gb|EEB66498.1| DNA ligase, NAD-dependent [Capnocytophaga sputigena Capno] Length = 663 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 22/45 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + L + + ++ + ++ E L ++ I +IA + N F Sbjct: 512 VGETVAKKLARHYKNIEALENATIEQLVEVDEIGNQIATSVVNFF 556 >gi|291538763|emb|CBL11874.1| DNA ligase, NAD-dependent [Roseburia intestinalis XB6B4] Length = 671 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 8/54 (14%), Positives = 24/54 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G + +++ F ++ + + + L ++ + + A I+ FH + Sbjct: 513 GIPNVGKAAAKTIMKRFSSILDLENADRDALMEVDDVGEVSADCIFRFFHDEKN 566 >gi|229075120|ref|ZP_04208115.1| hypothetical protein bcere0024_28620 [Bacillus cereus Rock4-18] gi|228708004|gb|EEL60182.1| hypothetical protein bcere0024_28620 [Bacillus cereus Rock4-18] Length = 239 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 51/102 (50%), Gaps = 20/102 (19%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G+Y + D ++YVGKA++++ R+ ++ +S ++ I + N + + + + Sbjct: 48 GIYFIKDYNDNIIYVGKAFSIKSRVLAHFNSYSN---IKEYVHLFNKVAYLIEDS----- 99 Query: 71 LLEANMIK-----RLKPRFNILLRDDKSFP-----YILITDK 102 LL+ ++++ + KP N + K FP YI T+K Sbjct: 100 LLKRSLLQVTYMIKYKPVLNKEV--QKEFPELYNQYIKQTNK 139 >gi|288560937|ref|YP_003424423.1| DEAD/DEAH box helicase domain-containing protein [Methanobrevibacter ruminantium M1] gi|288543647|gb|ADC47531.1| DEAD/DEAH box helicase domain-containing protein [Methanobrevibacter ruminantium M1] Length = 690 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 +G R R L+ +FG + + S L ++GI K+A I N Sbjct: 645 LGRKRARALVNTFG--EDLRPVSENELQKVDGIGPKLAKSIRNF 686 >gi|150399457|ref|YP_001323224.1| Hef nuclease [Methanococcus vannielii SB] gi|150012160|gb|ABR54612.1| ERCC4 domain protein [Methanococcus vannielii SB] Length = 776 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%) Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 K R+K + + IGP+ LL S TV+ I +S + L ++EGI K A KI Sbjct: 703 KERQKFLV---EGLPDIGPVMAENLLNSLQTVEKIFGASEKELTAVEGIGKITAKKIRE 758 >gi|260769097|ref|ZP_05878031.1| DNA ligase [Vibrio furnissii CIP 102972] gi|260617127|gb|EEX42312.1| DNA ligase [Vibrio furnissii CIP 102972] Length = 669 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 20/51 (39%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 +G L F T+ I ++ E L + + +A ++ F + + Sbjct: 520 VGEATAMNLAHHFLTLDAIREATIEQLIEVPDVGTIVASHVHAFFTQERNQ 570 >gi|309800209|ref|ZP_07694391.1| competence protein CelA [Streptococcus infantis SK1302] gi|308116167|gb|EFO53661.1| competence protein CelA [Streptococcus infantis SK1302] Length = 213 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 2/56 (3%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 KA+ L ++ G+G R + ++ + S + L + GI K K+ + Sbjct: 156 KASLEELKQVKGLGAKRAQDIIDHRDSNGKFK--SVDELKKVSGIGAKTLEKLKEY 209 Score = 38.2 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 8/27 (29%), Positives = 16/27 (59%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 ++++S E L ++G+ K A I +H Sbjct: 153 NLNKASLEELKQVKGLGAKRAQDIIDH 179 >gi|90408119|ref|ZP_01216289.1| DNA ligase [Psychromonas sp. CNPT3] gi|90310805|gb|EAS38920.1| DNA ligase [Psychromonas sp. CNPT3] Length = 667 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 3/69 (4%) Query: 547 KRRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 + KK S I +G L + + + + E L + + +A I Sbjct: 498 QVSKKTTLSRFLYALGIREVGEATANNLAMHYKNLSALQDAGIEALKEVADVGDIVAKNI 557 Query: 604 YNHFHKNTS 612 Y F + ++ Sbjct: 558 YYFFRQPSN 566 >gi|302878427|ref|YP_003846991.1| DNA ligase, NAD-dependent [Gallionella capsiferriformans ES-2] gi|302581216|gb|ADL55227.1| DNA ligase, NAD-dependent [Gallionella capsiferriformans ES-2] Length = 674 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 2/63 (3%) Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 RK L I +G R L Q FG + I ++ E L + + +A + + Sbjct: 508 RKTTLARFLFALGIRNVGETTARDLAQHFGALDAIMQADAERLQQVRDVGPVVAQSMVDF 567 Query: 607 FHK 609 F + Sbjct: 568 FAE 570 >gi|42521704|ref|NP_967084.1| DNA ligase [Bdellovibrio bacteriovorus HD100] gi|81618744|sp|Q6MRL9|DNLJ_BDEBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|39574234|emb|CAE77738.1| DNA ligase [Bdellovibrio bacteriovorus HD100] Length = 684 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 18/44 (40%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 +G + L F T+ +S E L + I K+A I + Sbjct: 540 VGEQTGKHLADHFLTIDKFLEASEEELLQVPEIGAKVAKSIRDW 583 >gi|256847966|ref|ZP_05553410.1| Holliday junction DNA helicase RuvA [Lactobacillus coleohominis 101-4-CHN] gi|256715026|gb|EEU30003.1| Holliday junction DNA helicase RuvA [Lactobacillus coleohominis 101-4-CHN] Length = 200 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 11/96 (11%) Query: 514 KGEALVLNMRDPILYFIQRLRDEAHRFAIT---THRKRRKKAAYSPLDEINGIGPLRKRL 570 + LN +Y Q +RD+ AI+ H +K ++ L ++GIGP Sbjct: 32 NPYSYPLNEDATKIYVYQAVRDD----AISLFGFH-NAEEKRLFTKLLAVSGIGPKSALA 86 Query: 571 LL---QSFGTVKMISRSSPETLASIEGISKKIACKI 603 +L G V+ I+ ++ + GI KK A +I Sbjct: 87 ILANPDHEGLVEAIANNNVSYITKFPGIGKKTASRI 122 >gi|124027840|ref|YP_001013160.1| DNA repair and recombination protein RadA [Hyperthermus butylicus DSM 5456] gi|123978534|gb|ABM80815.1| DNA repair and recombination protein [Hyperthermus butylicus DSM 5456] Length = 323 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 2/58 (3%) Query: 550 KKAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606 K+ S ++ G+GP L+++ + T++ I+ ++P+ L++ GI A +I Sbjct: 3 KQEIKSI-TDLPGVGPATANKLIEAGYATIEAIAVATPQELSAAAGIPLTAAQRIIKA 59 >gi|302537077|ref|ZP_07289419.1| DNA ligase, NAD-dependent [Streptomyces sp. C] gi|302445972|gb|EFL17788.1| DNA ligase, NAD-dependent [Streptomyces sp. C] Length = 736 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 24/49 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP+ L + F ++ I +++ E L + EG+ IA + F Sbjct: 560 SIRHVGPVAAEALAREFRSIDRIEQATEEELTATEGVGAIIAASLKEWF 608 >gi|332852097|ref|ZP_08433924.1| DNA ligase [Acinetobacter baumannii 6013150] gi|332867495|ref|ZP_08437648.1| DNA ligase [Acinetobacter baumannii 6013113] gi|332872654|ref|ZP_08440622.1| DNA ligase [Acinetobacter baumannii 6014059] gi|332729469|gb|EGJ60808.1| DNA ligase [Acinetobacter baumannii 6013150] gi|332733912|gb|EGJ65057.1| DNA ligase [Acinetobacter baumannii 6013113] gi|332739183|gb|EGJ70042.1| DNA ligase [Acinetobacter baumannii 6014059] Length = 683 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 22/49 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I G+G R+L +F T++ + ++ E L + A I + F Sbjct: 526 GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFF 574 >gi|260555699|ref|ZP_05827919.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ATCC 19606] gi|260410610|gb|EEX03908.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ATCC 19606] Length = 691 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 22/49 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I G+G R+L +F T++ + ++ E L + A I + F Sbjct: 534 GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFF 582 >gi|254781232|sp|B0VU02|DNLJ_ACIBS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 678 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 22/49 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I G+G R+L +F T++ + ++ E L + A I + F Sbjct: 521 GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFF 569 >gi|239501241|ref|ZP_04660551.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB900] Length = 678 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 22/49 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I G+G R+L +F T++ + ++ E L + A I + F Sbjct: 521 GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFF 569 >gi|229119547|ref|ZP_04248834.1| hypothetical protein bcere0017_57680 [Bacillus cereus Rock1-3] gi|228663894|gb|EEL19448.1| hypothetical protein bcere0017_57680 [Bacillus cereus Rock1-3] Length = 239 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 51/102 (50%), Gaps = 20/102 (19%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G+Y + D ++YVGKA++++ R+ ++ +S ++ I + N + + + + Sbjct: 48 GIYFIKDYNDNIIYVGKAFSIKSRVLAHFNSYSN---IKEYVHLFNKVAYLIEDS----- 99 Query: 71 LLEANMIK-----RLKPRFNILLRDDKSFP-----YILITDK 102 LL+ ++++ + KP N + K FP YI T+K Sbjct: 100 LLKRSLLQVTYMIKYKPVLNKEV--QKEFPELYNQYIKQTNK 139 >gi|213156587|ref|YP_002318248.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB0057] gi|215484469|ref|YP_002326704.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB307-0294] gi|301347734|ref|ZP_07228475.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB056] gi|301512482|ref|ZP_07237719.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB058] gi|301594386|ref|ZP_07239394.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB059] gi|221222446|sp|A3M2U3|DNLJ_ACIBT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254778154|sp|B7GZ71|DNLJ_ACIB3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254778155|sp|B7I790|DNLJ_ACIB5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781253|sp|B0V8E4|DNLJ_ACIBY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|193076578|gb|ABO11237.2| DNA ligase [Acinetobacter baumannii ATCC 17978] gi|213055747|gb|ACJ40649.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB0057] gi|213986610|gb|ACJ56909.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB307-0294] Length = 678 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 22/49 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I G+G R+L +F T++ + ++ E L + A I + F Sbjct: 521 GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFF 569 >gi|184157078|ref|YP_001845417.1| NAD-dependent DNA ligase [Acinetobacter baumannii ACICU] gi|254778156|sp|B2HUJ5|DNLJ_ACIBC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|183208672|gb|ACC56070.1| NAD-dependent DNA ligase [Acinetobacter baumannii ACICU] Length = 673 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 22/49 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I G+G R+L +F T++ + ++ E L + A I + F Sbjct: 516 GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFF 564 >gi|169634132|ref|YP_001707868.1| DNA ligase [Acinetobacter baumannii SDF] gi|169152924|emb|CAP01965.1| DNA ligase [Acinetobacter baumannii] Length = 691 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 22/49 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I G+G R+L +F T++ + ++ E L + A I + F Sbjct: 534 GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFF 582 >gi|169797009|ref|YP_001714802.1| DNA ligase [Acinetobacter baumannii AYE] gi|169149936|emb|CAM87830.1| DNA ligase [Acinetobacter baumannii AYE] Length = 691 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 22/49 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I G+G R+L +F T++ + ++ E L + A I + F Sbjct: 534 GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFF 582 >gi|126640855|ref|YP_001083839.1| DNA ligase [Acinetobacter baumannii ATCC 17978] gi|322506977|gb|ADX02431.1| DNA ligase [Acinetobacter baumannii 1656-2] gi|323516844|gb|ADX91225.1| DNA ligase, NAD-dependent [Acinetobacter baumannii TCDC-AB0715] Length = 669 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 22/49 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I G+G R+L +F T++ + ++ E L + A I + F Sbjct: 512 GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFF 560 >gi|163802586|ref|ZP_02196478.1| NAD-dependent DNA ligase LigA [Vibrio sp. AND4] gi|159173669|gb|EDP58488.1| NAD-dependent DNA ligase LigA [Vibrio sp. AND4] Length = 670 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 21/52 (40%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L Q F + I +++ E L ++ I +A I F + + Sbjct: 521 VGEATAANLAQYFKNLDAIQQATEEQLVDVQDIGVVVAKHITTFFSEEKNQA 572 >gi|331703733|ref|YP_004400420.1| DNA ligase [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802288|emb|CBW54442.1| DNA ligase [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 668 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 24/54 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I IG ++L + + + + ++S + L I I + +A I + F + Sbjct: 513 GIRHIGSKTAKILARKYQNIDNLMKASYDELIQINSIGESLALSIIDWFRIEDN 566 >gi|170718864|ref|YP_001784038.1| NAD-dependent DNA ligase LigA [Haemophilus somnus 2336] gi|254781341|sp|B0USD9|DNLJ_HAES2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|168826993|gb|ACA32364.1| DNA ligase, NAD-dependent [Haemophilus somnus 2336] Length = 667 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 6/63 (9%) Query: 550 KKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 KA + L I +G L F T++ ++ E L ++ + + +A +I Sbjct: 500 AKAKKTTLARFIFALGIREVGETTALNLATHFKTLEAFENATFEQLQKVQDVGEVVAKRI 559 Query: 604 YNH 606 + Sbjct: 560 RSF 562 >gi|222099460|ref|YP_002534028.1| DNA integrity scanning protein disA [Thermotoga neapolitana DSM 4359] gi|254777855|sp|B9K6S9|DISA_THENN RecName: Full=DNA integrity scanning protein disA gi|221571850|gb|ACM22662.1| DNA integrity scanning protein disA [Thermotoga neapolitana DSM 4359] Length = 352 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 21/78 (26%) Query: 555 SPLDEINGIGPLRKRLLLQS---------------FGTVKMISRSSPETLASIEGISKKI 599 S LD+I + R LL++ F T+ IS++S E L +EGI +K Sbjct: 277 SQLDDI--LVSARGYRLLKTAARIPISIGYNVVKMFKTLDQISKASVEDLKKVEGIGEKR 334 Query: 600 ACKIYNHF----HKNTSH 613 A I H+ TS Sbjct: 335 AKAISESISSLKHRRTSE 352 >gi|192361192|ref|YP_001982383.1| DNA ligase, NAD-dependent [Cellvibrio japonicus Ueda107] gi|254781281|sp|B3PGQ8|DNLJ_CELJU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|190687357|gb|ACE85035.1| DNA ligase, NAD-dependent [Cellvibrio japonicus Ueda107] Length = 680 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 23/50 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 IG R L FG+++ ++ + ETL + + A + F + ++ Sbjct: 526 IGEATARNLANHFGSLEKLAEADEETLVQVNDVGPVGAHFVAEFFAQESN 575 >gi|222480840|ref|YP_002567077.1| Ribosomal protein L32e [Halorubrum lacusprofundi ATCC 49239] gi|222453742|gb|ACM58007.1| Ribosomal protein L32e [Halorubrum lacusprofundi ATCC 49239] Length = 236 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L++I+G+GP + L + + TV+ + +S L+ ++G+ +A +I Sbjct: 4 ELEDISGVGPSKADPLRAAGYETVEDVKAASQSELSQVDGVGNALAARIKA 54 >gi|82523924|emb|CAI78646.1| NAD-dependent DNA ligase [uncultured delta proteobacterium] Length = 670 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G +LL FG+++ + + E L I I +I+ I FH+ + Sbjct: 519 GIRHVGERTAKLLAGYFGSIENLIAAKSEDLTVINEIGPEISASIVEFFHEPKNKA 574 >gi|291533536|emb|CBL06649.1| Putative ATPase (DUF699) [Megamonas hypermegale ART12/1] Length = 438 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 3/46 (6%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603 INGIGP + ++ FG T+++I++ SP L + GI KK A KI Sbjct: 90 INGIGPAMAKKIVAEFGEKTLEIIAK-SPNKLLKVPGIGKKTAEKI 134 >gi|229917963|ref|YP_002886609.1| DNA ligase, NAD-dependent [Exiguobacterium sp. AT1b] gi|229469392|gb|ACQ71164.1| DNA ligase, NAD-dependent [Exiguobacterium sp. AT1b] Length = 664 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 26/50 (52%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L+ + F T+ I ++ E L SI+GI K+A I +F K + Sbjct: 511 VGQKAASLIAERFETMDAIIAATVEELTSIDGIGTKMAESIVLYFEKPEA 560 >gi|269955204|ref|YP_003324993.1| hypothetical protein Xcel_0396 [Xylanimonas cellulosilytica DSM 15894] gi|269303885|gb|ACZ29435.1| protein of unknown function DUF147 [Xylanimonas cellulosilytica DSM 15894] Length = 361 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 20/38 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L+ FG ++ + +S + L +++G+ ++ A + Sbjct: 311 RLVAHFGGLQKLLAASVDDLMAVDGVGEQRARAVREGL 348 >gi|195122302|ref|XP_002005651.1| GI20584 [Drosophila mojavensis] gi|193910719|gb|EDW09586.1| GI20584 [Drosophila mojavensis] Length = 254 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 26/54 (48%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L I + LLQ FG ++ + +S E L+ + G+ + A K+Y H+ Sbjct: 196 ALTNIKPVNKTDAVTLLQIFGNLENLINASEERLSQVMGLGPRKAKKLYKTLHE 249 >gi|170016835|ref|YP_001727754.1| DNA ligase, NAD-dependent [Leuconostoc citreum KM20] gi|254781358|sp|B1MXQ8|DNLJ_LEUCK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|169803692|gb|ACA82310.1| DNA ligase, NAD-dependent [Leuconostoc citreum KM20] Length = 681 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 26/46 (56%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 +G RL+ + F T++ I+ +S +ASI GI + IA + +F Sbjct: 526 VGAKAARLIAEKFKTLQAIADASVIDIASIAGIGETIALSVVQYFK 571 >gi|113460523|ref|YP_718587.1| NAD-dependent DNA ligase LigA [Haemophilus somnus 129PT] gi|122945214|sp|Q0I2H6|DNLJ_HAES1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|112822566|gb|ABI24655.1| DNA ligase (NAD+) [Haemophilus somnus 129PT] Length = 673 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 6/63 (9%) Query: 550 KKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 KA + L I +G L F T++ ++ E L ++ + + +A +I Sbjct: 506 AKAKKTTLARFIFALGIREVGETTALNLATHFKTLEAFENATFEQLQKVQDVGEVVAKRI 565 Query: 604 YNH 606 + Sbjct: 566 RSF 568 >gi|225013055|ref|ZP_03703470.1| DNA ligase, NAD-dependent [Flavobacteria bacterium MS024-2A] gi|225002783|gb|EEG40764.1| DNA ligase, NAD-dependent [Flavobacteria bacterium MS024-2A] Length = 487 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 24/45 (53%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + L + F ++ ++ ++ E L + E I +IA + ++F Sbjct: 335 VGETVAKQLAREFKSIDRLALATLEELTNTEEIGDRIAQSVLDYF 379 >gi|167039197|ref|YP_001662182.1| NAD-dependent DNA ligase [Thermoanaerobacter sp. X514] gi|256752857|ref|ZP_05493696.1| DNA ligase, NAD-dependent [Thermoanaerobacter ethanolicus CCSD1] gi|300913208|ref|ZP_07130525.1| DNA ligase, NAD-dependent [Thermoanaerobacter sp. X561] gi|307723778|ref|YP_003903529.1| NAD-dependent DNA ligase [Thermoanaerobacter sp. X513] gi|254781440|sp|B0K3S1|DNLJ_THEPX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166853437|gb|ABY91846.1| DNA ligase, NAD-dependent [Thermoanaerobacter sp. X514] gi|256748259|gb|EEU61324.1| DNA ligase, NAD-dependent [Thermoanaerobacter ethanolicus CCSD1] gi|300889893|gb|EFK85038.1| DNA ligase, NAD-dependent [Thermoanaerobacter sp. X561] gi|307580839|gb|ADN54238.1| DNA ligase, NAD-dependent [Thermoanaerobacter sp. X513] Length = 662 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 23/50 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 IG +++ + F T+ I ++ E + I K+A I + F + + Sbjct: 511 IGSKAAQVIAEHFKTMDNIMKAKFEDFTQLPDIGPKMARSIVSFFAEKQN 560 >gi|327475239|gb|AEA77214.1| DNA ligase [Bacillus sp. 15.4] Length = 668 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 25/54 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G + L Q FG + + +S + L +I I K+A + +F K + Sbjct: 511 GIRHVGAKAAKTLAQEFGDIDTLMNASKDDLTAINEIGDKMADAVVAYFEKEEA 564 >gi|261854791|ref|YP_003262074.1| DNA ligase, NAD-dependent [Halothiobacillus neapolitanus c2] gi|261835260|gb|ACX95027.1| DNA ligase, NAD-dependent [Halothiobacillus neapolitanus c2] Length = 685 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 6/47 (12%), Positives = 20/47 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G + L F + ++ ++ E L ++ + +A ++ + Sbjct: 535 VGEVTAAGLAAHFRNLDALNAATLEDLQAVPDVGPVVAQHVFTFLRQ 581 >gi|312867154|ref|ZP_07727364.1| comEA protein [Streptococcus parasanguinis F0405] gi|311097283|gb|EFQ55517.1| comEA protein [Streptococcus parasanguinis F0405] Length = 222 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 12/62 (19%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605 +A S L ++GIG R + ++ + S + L ++ GI +K K+ + Sbjct: 165 RATESDLQTVSGIGQKRAQDIIAY-------REANGPFRSVDDLKNVSGIGEKTLEKLRD 217 Query: 606 HF 607 F Sbjct: 218 AF 219 >gi|328883258|emb|CCA56497.1| DNA integrity scanning protein disA [Streptomyces venezuelae ATCC 10712] Length = 352 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 20/40 (50%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ FG ++ + +S + L +++G+ + A + Sbjct: 300 IERLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 339 >gi|307266289|ref|ZP_07547829.1| DNA ligase, NAD-dependent [Thermoanaerobacter wiegelii Rt8.B1] gi|306918667|gb|EFN48901.1| DNA ligase, NAD-dependent [Thermoanaerobacter wiegelii Rt8.B1] Length = 662 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 23/50 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 IG +++ + F T+ I ++ E + I K+A I + F + + Sbjct: 511 IGSKAAQVIAEHFKTMDNIMKAKFEDFTQLPDIGPKMARSIVSFFAEKQN 560 >gi|302535146|ref|ZP_07287488.1| DNA-binding protein [Streptomyces sp. C] gi|302444041|gb|EFL15857.1| DNA-binding protein [Streptomyces sp. C] Length = 374 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 20/40 (50%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ FG ++ + +S + L +++G+ + A + Sbjct: 322 IERLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 361 >gi|282866879|ref|ZP_06275913.1| protein of unknown function DUF147 [Streptomyces sp. ACTE] gi|282558278|gb|EFB63846.1| protein of unknown function DUF147 [Streptomyces sp. ACTE] Length = 352 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 20/40 (50%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ FG ++ + +S + L +++G+ + A + Sbjct: 300 IERLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 339 >gi|239942184|ref|ZP_04694121.1| DNA integrity scanning protein DisA [Streptomyces roseosporus NRRL 15998] gi|239988650|ref|ZP_04709314.1| DNA integrity scanning protein DisA [Streptomyces roseosporus NRRL 11379] gi|291445638|ref|ZP_06585028.1| DNA integrity scanning protein disA [Streptomyces roseosporus NRRL 15998] gi|291348585|gb|EFE75489.1| DNA integrity scanning protein disA [Streptomyces roseosporus NRRL 15998] Length = 374 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 20/40 (50%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ FG ++ + +S + L +++G+ + A + Sbjct: 322 IERLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 361 >gi|254386483|ref|ZP_05001786.1| DNA-binding protein [Streptomyces sp. Mg1] gi|194345331|gb|EDX26297.1| DNA-binding protein [Streptomyces sp. Mg1] Length = 374 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 20/40 (50%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ FG ++ + +S + L +++G+ + A + Sbjct: 322 IERLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 361 >gi|182437921|ref|YP_001825640.1| DNA integrity scanning protein DisA [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778557|ref|ZP_08237822.1| DNA integrity scanning protein disA [Streptomyces cf. griseus XylebKG-1] gi|226729443|sp|B1VSK3|DISA_STRGG RecName: Full=DNA integrity scanning protein disA gi|178466437|dbj|BAG20957.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658890|gb|EGE43736.1| DNA integrity scanning protein disA [Streptomyces cf. griseus XylebKG-1] Length = 374 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 20/40 (50%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ FG ++ + +S + L +++G+ + A + Sbjct: 322 IERLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 361 >gi|332284990|ref|YP_004416901.1| DNA ligase [Pusillimonas sp. T7-7] gi|330428943|gb|AEC20277.1| DNA ligase [Pusillimonas sp. T7-7] Length = 698 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 22/51 (43%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G R L + FG+V + + L + + + +A I N F + Sbjct: 544 GIRHVGEATARDLARHFGSVDAVMAADETALLQVHDVGQVVAASILNFFAE 594 >gi|182420286|ref|ZP_02951515.1| helicase, RecD/TraA family [Clostridium butyricum 5521] gi|237666716|ref|ZP_04526701.1| helicase, RecD/TraA family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182375881|gb|EDT73473.1| helicase, RecD/TraA family [Clostridium butyricum 5521] gi|237657915|gb|EEP55470.1| helicase, RecD/TraA family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 765 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 16/66 (24%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN------------ 605 I+GIGP+ + ++ FG T+ I +S E L IEGI +K IY Sbjct: 88 IHGIGPVTAKKIIAKFGEETLD-IMENSIERLMEIEGIGEKKFQIIYESYIEQQGLKDII 146 Query: 606 -HFHKN 610 +FHK+ Sbjct: 147 LYFHKH 152 >gi|119719413|ref|YP_919908.1| DEAD/DEAH box helicase domain-containing protein [Thermofilum pendens Hrk 5] gi|119524533|gb|ABL77905.1| DEAD/DEAH box helicase domain protein [Thermofilum pendens Hrk 5] Length = 739 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 1/47 (2%) Query: 562 GIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 GIG +R R L + + ++ + + L I GI +A I Sbjct: 665 GIGRVRARRLYEHGYKSLVDLILADERDLTRIPGIGPNLARSIKRQL 711 >gi|331266582|ref|YP_004326212.1| competence protein CelA [Streptococcus oralis Uo5] gi|326683254|emb|CBZ00872.1| competence protein CelA [Streptococcus oralis Uo5] Length = 216 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605 KA+ L ++ G+G R + ++ + S + L + GI K K+ + Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGAKTIEKLKD 211 Query: 606 H 606 + Sbjct: 212 Y 212 >gi|322376449|ref|ZP_08050942.1| competence protein CelA [Streptococcus sp. M334] gi|321282256|gb|EFX59263.1| competence protein CelA [Streptococcus sp. M334] Length = 216 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605 KA+ L ++ G+G R + ++ + S + L + GI K K+ + Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGAKTIEKLKD 211 Query: 606 H 606 + Sbjct: 212 Y 212 >gi|322374509|ref|ZP_08049023.1| competence protein CelA [Streptococcus sp. C300] gi|321280009|gb|EFX57048.1| competence protein CelA [Streptococcus sp. C300] Length = 217 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605 KA+ L ++ G+G R + ++ + S + L + GI K K+ + Sbjct: 160 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGAKTIEKLKD 212 Query: 606 H 606 + Sbjct: 213 Y 213 >gi|315612963|ref|ZP_07887874.1| competence protein ComEA [Streptococcus sanguinis ATCC 49296] gi|315315073|gb|EFU63114.1| competence protein ComEA [Streptococcus sanguinis ATCC 49296] Length = 216 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605 KA+ L ++ G+G R + ++ + S + L + GI K K+ + Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGAKTIEKLKD 211 Query: 606 H 606 + Sbjct: 212 Y 212 >gi|307706453|ref|ZP_07643262.1| comE operon protein 1 [Streptococcus mitis SK321] gi|307618163|gb|EFN97321.1| comE operon protein 1 [Streptococcus mitis SK321] Length = 216 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605 KA+ L ++ G+G R + ++ + S + L + GI K K+ + Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGAKTIEKLKD 211 Query: 606 H 606 + Sbjct: 212 Y 212 >gi|307708589|ref|ZP_07645053.1| ComE operon protein 1 [Streptococcus mitis NCTC 12261] gi|307615338|gb|EFN94547.1| ComE operon protein 1 [Streptococcus mitis NCTC 12261] Length = 216 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605 KA+ L ++ G+G R + ++ + S + L + GI K K+ + Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGAKTIEKLKD 211 Query: 606 H 606 + Sbjct: 212 Y 212 >gi|306829309|ref|ZP_07462499.1| competence protein CelA [Streptococcus mitis ATCC 6249] gi|304428395|gb|EFM31485.1| competence protein CelA [Streptococcus mitis ATCC 6249] Length = 217 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605 KA+ L ++ G+G R + ++ + S + L + GI K K+ + Sbjct: 160 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGAKTIEKLKD 212 Query: 606 H 606 + Sbjct: 213 Y 213 >gi|291521797|emb|CBK80090.1| helicase, putative, RecD/TraA family [Coprococcus catus GD/7] Length = 740 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I G+GP +++ F + ++I PE LA I+GIS++ A +IY FH+ Sbjct: 88 IRGVGPSLAARIVKKFKKDSFRIIEE-EPERLAEIKGISERKAREIYQQFHEKQD 141 >gi|293365202|ref|ZP_06611919.1| competence protein CelA [Streptococcus oralis ATCC 35037] gi|307703740|ref|ZP_07640681.1| comE operon protein 1 [Streptococcus oralis ATCC 35037] gi|291316652|gb|EFE57088.1| competence protein CelA [Streptococcus oralis ATCC 35037] gi|307622575|gb|EFO01571.1| comE operon protein 1 [Streptococcus oralis ATCC 35037] Length = 216 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605 KA+ L ++ G+G R + ++ + S + L + GI K K+ + Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGAKTIEKLKD 211 Query: 606 H 606 + Sbjct: 212 Y 212 >gi|289167798|ref|YP_003446067.1| competence protein CelA [Streptococcus mitis B6] gi|288907365|emb|CBJ22202.1| competence protein CelA [Streptococcus mitis B6] Length = 209 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605 KA+ L ++ G+G R + ++ + S + L + GI K K+ + Sbjct: 152 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGAKTIEKLKD 204 Query: 606 H 606 + Sbjct: 205 Y 205 >gi|270292942|ref|ZP_06199153.1| competence protein CelA [Streptococcus sp. M143] gi|270278921|gb|EFA24767.1| competence protein CelA [Streptococcus sp. M143] Length = 216 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605 KA+ L ++ G+G R + ++ + S + L + GI K K+ + Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGAKTIEKLKD 211 Query: 606 H 606 + Sbjct: 212 Y 212 >gi|225856613|ref|YP_002738124.1| competence protein CelA [Streptococcus pneumoniae P1031] gi|225724609|gb|ACO20461.1| competence protein CelA [Streptococcus pneumoniae P1031] gi|301794093|emb|CBW36499.1| putative competence protein [Streptococcus pneumoniae INV104] gi|332204956|gb|EGJ19021.1| comEA family protein [Streptococcus pneumoniae GA47901] Length = 216 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605 KA+ L ++ G+G R + ++ + S + L + GI K K+ + Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGAKTIEKLKD 211 Query: 606 H 606 + Sbjct: 212 Y 212 >gi|168491043|ref|ZP_02715186.1| competence protein [Streptococcus pneumoniae CDC0288-04] gi|183574781|gb|EDT95309.1| competence protein [Streptococcus pneumoniae CDC0288-04] Length = 216 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605 KA+ L ++ G+G R + ++ + S + L + GI K K+ + Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGAKTIEKLKD 211 Query: 606 H 606 + Sbjct: 212 Y 212 >gi|148984696|ref|ZP_01817964.1| competence protein CelA [Streptococcus pneumoniae SP3-BS71] gi|147923087|gb|EDK74202.1| competence protein CelA [Streptococcus pneumoniae SP3-BS71] gi|301799931|emb|CBW32514.1| putative competence protein [Streptococcus pneumoniae OXC141] Length = 216 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605 KA+ L ++ G+G R + ++ + S + L + GI K K+ + Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGAKTIEKLKD 211 Query: 606 H 606 + Sbjct: 212 Y 212 >gi|91204173|emb|CAJ71826.1| strongly similar to DNA ligase [Candidatus Kuenenia stuttgartiensis] Length = 674 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 1/69 (1%) Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 AI R R L I+ +G +L + F ++ + ++ + L I I +A Sbjct: 504 AIENSRGRDLDRLICAL-GIHNVGLHTAEVLSEHFDSLGKLLNATADELKKIHEIGPVVA 562 Query: 601 CKIYNHFHK 609 I F Sbjct: 563 QSIVEFFQN 571 >gi|167038089|ref|YP_001665667.1| NAD-dependent DNA ligase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116496|ref|YP_004186655.1| NAD-dependent DNA ligase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|254781439|sp|B0KBN6|DNLJ_THEP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166856923|gb|ABY95331.1| DNA ligase, NAD-dependent [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929587|gb|ADV80272.1| DNA ligase, NAD-dependent [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 662 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 23/50 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 IG +++ + F T+ I ++ E + I K+A I + F + + Sbjct: 511 IGSKAAQVIAEHFKTMDNIMKAKFEDFTQLPDIGPKMARSIVSFFAEKQN 560 >gi|257878122|ref|ZP_05657775.1| competence protein ComEA [Enterococcus faecium 1,230,933] gi|257881092|ref|ZP_05660745.1| competence protein ComEA [Enterococcus faecium 1,231,502] gi|257889678|ref|ZP_05669331.1| competence protein ComEA [Enterococcus faecium 1,231,410] gi|257892384|ref|ZP_05672037.1| competence protein ComEA [Enterococcus faecium 1,231,408] gi|260559171|ref|ZP_05831357.1| competence protein ComEA [Enterococcus faecium C68] gi|257812350|gb|EEV41108.1| competence protein ComEA [Enterococcus faecium 1,230,933] gi|257816750|gb|EEV44078.1| competence protein ComEA [Enterococcus faecium 1,231,502] gi|257826038|gb|EEV52664.1| competence protein ComEA [Enterococcus faecium 1,231,410] gi|257828763|gb|EEV55370.1| competence protein ComEA [Enterococcus faecium 1,231,408] gi|260074928|gb|EEW63244.1| competence protein ComEA [Enterococcus faecium C68] Length = 225 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 10/59 (16%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYNH 606 A S L +I GIG ++ + +++ F G+ + + E L I GI +K K+ N Sbjct: 169 ATPSELQQIPGIGSVKAQEIIR-FREENGSFQKV-----EDLQEISGIGEKTVEKLKNF 221 >gi|241698610|ref|XP_002413128.1| excision repair cross-complementing 1 ercc1, putative [Ixodes scapularis] gi|215506942|gb|EEC16436.1| excision repair cross-complementing 1 ercc1, putative [Ixodes scapularis] Length = 111 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 26/39 (66%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 LL SFGT++ IS++S E L+ G+ + A ++Y+ H+ Sbjct: 63 LLTSFGTLEKISKASKEELSFHPGMGMQKASRLYDVLHQ 101 >gi|292491548|ref|YP_003526987.1| DNA ligase, NAD-dependent [Nitrosococcus halophilus Nc4] gi|291580143|gb|ADE14600.1| DNA ligase, NAD-dependent [Nitrosococcus halophilus Nc4] Length = 675 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 21/47 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G + L + F +++ + +S E L + I +A I F + Sbjct: 522 VGEATAQALAEEFNSLEALEGASEERLQEVTDIGPVVATHIAAFFRQ 568 >gi|257884754|ref|ZP_05664407.1| competence protein ComEA [Enterococcus faecium 1,231,501] gi|257820592|gb|EEV47740.1| competence protein ComEA [Enterococcus faecium 1,231,501] Length = 225 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 10/59 (16%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYNH 606 A S L +I GIG ++ + +++ F G+ + + E L I GI +K K+ N Sbjct: 169 ATPSELQQIPGIGSVKAQEIIR-FREENGSFQKV-----EDLQEISGIGEKTVEKLKNF 221 >gi|152973931|ref|YP_001373448.1| DNA integrity scanning protein DisA [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022683|gb|ABS20453.1| protein of unknown function DUF147 [Bacillus cytotoxicus NVH 391-98] Length = 357 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 3/61 (4%) Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 R S + + PL L+ F T++ + R+S + L +EGI + A KI Sbjct: 289 RGYRITSKISRVP---PLIIENLINRFKTLQGVCRASIDELDDVEGIGEVRAKKIREGLK 345 Query: 609 K 609 + Sbjct: 346 R 346 >gi|241896133|ref|ZP_04783429.1| NAD-dependent DNA ligase [Weissella paramesenteroides ATCC 33313] gi|241870647|gb|EER74398.1| NAD-dependent DNA ligase [Weissella paramesenteroides ATCC 33313] Length = 675 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 23/49 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G + + FG +K I+ ++ + +A + G+ I + +F Sbjct: 519 GIRNVGAKAAKTIATKFGNLKAIAEATADDIAKLPGMGLTIGDSVAQYF 567 >gi|219851698|ref|YP_002466130.1| Hef nuclease [Methanosphaerula palustris E1-9c] gi|219545957|gb|ACL16407.1| DEAD/DEAH box helicase domain protein [Methanosphaerula palustris E1-9c] Length = 754 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 11/69 (15%) Query: 544 THRKRRKKAAYSPLDE-------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596 HR K+ S ++ IG RLLL G+V+ + ++ E L+SI GI Sbjct: 682 HHR----KSFKSVKEQQEYVVAAFPDIGLKNARLLLDYCGSVRAVINANEEVLSSIRGIG 737 Query: 597 KKIACKIYN 605 +K A +I Sbjct: 738 EKTAQRIVE 746 >gi|126329589|ref|XP_001365997.1| PREDICTED: similar to DNA excision repair protein ERCC-1 [Monodelphis domestica] Length = 326 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 25/41 (60%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + LL +FG+++ ++ +S E L+ G + A ++++ H+ Sbjct: 279 QTLLATFGSLEQLTAASQEDLSLCPGFGPQKARRLFDVLHQ 319 >gi|39938924|ref|NP_950690.1| NAD-dependent DNA ligase [Onion yellows phytoplasma OY-M] gi|81402396|sp|Q6YQD6|DNLJ_ONYPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|39722033|dbj|BAD04523.1| NAD-dependent DNA ligase [Onion yellows phytoplasma OY-M] Length = 671 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 27/52 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I IG ++L + F T++ + +++PE + I I KIA I +F + Sbjct: 512 GIKHIGKKVSQVLAKHFQTIENLQQATPELITQIREIGIKIAQSIQQYFSNS 563 >gi|319937197|ref|ZP_08011604.1| DNA ligase [Coprobacillus sp. 29_1] gi|319807563|gb|EFW04156.1| DNA ligase [Coprobacillus sp. 29_1] Length = 662 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I GIG L + F ++ + +S L SI+ + + I I NHF + + Sbjct: 508 GIKGIGAKMADNLSKEFKSIDAMLEASTAKLLSIKDVGETIVQSI-NHFRNDPAS 561 >gi|301801791|emb|CBW34502.1| putative competence protein [Streptococcus pneumoniae INV200] Length = 212 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 2/56 (3%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 KA+ L ++ G+G R + ++ + S + L + GI K K+ ++ Sbjct: 155 KASLEELKQVKGLGGKRAQDIIDHRESNGKFK--SVDELKKVSGIGAKTIEKLKDY 208 >gi|254451805|ref|ZP_05065242.1| helicase, RecD/TraA family [Octadecabacter antarcticus 238] gi|198266211|gb|EDY90481.1| helicase, RecD/TraA family [Octadecabacter antarcticus 238] Length = 675 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Query: 560 INGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKI 603 I GIGP+ + L++ FG V I ++PE L +EGI K A KI Sbjct: 37 IRGIGPVYAKRLVKMFGKDVFDIIEATPERLREVEGIGPKRADKI 81 >gi|145220287|ref|YP_001130996.1| DNA ligase, NAD-dependent [Prosthecochloris vibrioformis DSM 265] gi|190359271|sp|A4SG85|DNLJ_PROVI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|145206451|gb|ABP37494.1| DNA ligase, NAD-dependent [Chlorobium phaeovibrioides DSM 265] Length = 674 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 24/49 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G R L ++ +++++ +S E L+ + I IA I + F Sbjct: 523 GIRHVGRATARELAKACSSIEVLKEASFEELSEVPDIGPVIARSIRDWF 571 >gi|282163483|ref|YP_003355868.1| putative DNA mismatch repair protein [Methanocella paludicola SANAE] gi|282155797|dbj|BAI60885.1| putative DNA mismatch repair protein [Methanocella paludicola SANAE] Length = 705 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 5/63 (7%) Query: 557 LDEINGIGPLRKRLLLQSFGT----VKMISRSSPETLASIEGISKKIA-CKIYNHFHKNT 611 L E+ GIG L+ FG+ ++++ R +L+++ GIS+K A I+ + Sbjct: 6 LIELPGIGEKISNKLIDHFGSERAALEVLRRHDVASLSAVPGISEKYAVSLIHEVIAQEE 65 Query: 612 SHT 614 + Sbjct: 66 GAS 68 >gi|229548668|ref|ZP_04437393.1| DNA ligase, NAD-dependent [Enterococcus faecalis ATCC 29200] gi|257420983|ref|ZP_05597973.1| DNA ligase [Enterococcus faecalis X98] gi|312953107|ref|ZP_07771956.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0102] gi|229306184|gb|EEN72180.1| DNA ligase, NAD-dependent [Enterococcus faecalis ATCC 29200] gi|257162807|gb|EEU92767.1| DNA ligase [Enterococcus faecalis X98] gi|310628941|gb|EFQ12224.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0102] gi|315153982|gb|EFT97998.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0031] gi|315156746|gb|EFU00763.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0043] Length = 676 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 27/53 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G ++L + FG + +SR++ E + +++ I + IA + +F Sbjct: 516 GIRHVGAKAAKILAEHFGDLPTLSRATAEEIVALDSIGETIANSVVTYFENEE 568 >gi|293552878|ref|ZP_06673536.1| competence protein comEA [Enterococcus faecium E1039] gi|291603012|gb|EFF33206.1| competence protein comEA [Enterococcus faecium E1039] Length = 238 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 10/59 (16%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYNH 606 A S L +I GIG ++ + +++ F G+ + + E L I GI +K K+ N Sbjct: 182 ATPSELQQIPGIGSVKAQEIIR-FREENGSFQKV-----EDLQEISGIGEKTVEKLKNF 234 >gi|148998610|ref|ZP_01826050.1| competence protein CelA [Streptococcus pneumoniae SP11-BS70] gi|168575617|ref|ZP_02721553.1| competence protein [Streptococcus pneumoniae MLV-016] gi|307067612|ref|YP_003876578.1| DNA uptake protein-like DNA-binding protein [Streptococcus pneumoniae AP200] gi|147755608|gb|EDK62655.1| competence protein CelA [Streptococcus pneumoniae SP11-BS70] gi|183578591|gb|EDT99119.1| competence protein [Streptococcus pneumoniae MLV-016] gi|306409149|gb|ADM84576.1| DNA uptake protein-like DNA-binding protein [Streptococcus pneumoniae AP200] gi|332202810|gb|EGJ16879.1| comEA family protein [Streptococcus pneumoniae GA41317] Length = 216 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605 KA+ L ++ G+G R + ++ + S + L + GI K K+ + Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSIDELKKVSGIGAKTIEKLKD 211 Query: 606 H 606 + Sbjct: 212 Y 212 >gi|119961905|ref|YP_946007.1| DNA integrity scanning protein DisA [Arthrobacter aurescens TC1] gi|119948764|gb|ABM07675.1| putative DNA-binding protein [Arthrobacter aurescens TC1] Length = 358 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 3/59 (5%) Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 R S L + L+ FG ++ + ++ + L +++GI + A + Sbjct: 290 RGYRLLSGLKSVP---KAVADRLVDYFGGLQNLMAATIDDLMTVDGIGDQRARTVREGL 345 >gi|326512966|dbj|BAK03390.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 388 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 21/35 (60%) Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 FG++ I +S E LA GI ++ ++++ FH+ Sbjct: 262 FGSLSRIMDASMEELARCPGIGERKVKRLHDTFHE 296 >gi|293569405|ref|ZP_06680702.1| putative competence protein comEA [Enterococcus faecium E1071] gi|291587931|gb|EFF19782.1| putative competence protein comEA [Enterococcus faecium E1071] Length = 238 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 10/59 (16%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYNH 606 A S L +I GIG ++ + +++ F G+ + + E L I GI +K K+ N Sbjct: 182 ATPSELQQIPGIGSVKAQEIIR-FREENGSFQKV-----EDLQEISGIGEKTVEKLKNF 234 >gi|229817979|ref|ZP_04448261.1| hypothetical protein BIFANG_03266 [Bifidobacterium angulatum DSM 20098] gi|229784583|gb|EEP20697.1| hypothetical protein BIFANG_03266 [Bifidobacterium angulatum DSM 20098] Length = 927 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 27/45 (60%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +GP RL+ + G++ IS++S + L I+G+ +IA + + F Sbjct: 754 LGPPTARLIASAMGSLDAISKASVDDLTQIDGVGPEIAESVVHWF 798 >gi|254458423|ref|ZP_05071848.1| RimK domain protein ATP-grasp [Campylobacterales bacterium GD 1] gi|207084731|gb|EDZ62018.1| RimK domain protein ATP-grasp [Campylobacterales bacterium GD 1] Length = 475 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 16/82 (19%) Query: 533 LRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMI-----SRSSPE 587 ++DEA K K+ L ++G+G + +++ FG V + +S Sbjct: 402 VQDEA---------KITKEELSDFLTSVDGVGAKKVEKIVKHFGNVDEVVGVLHQNTSI- 451 Query: 588 TLASIEGISKKIACKIYNHFHK 609 L ++GI+KK+A KI + K Sbjct: 452 -LTEVKGITKKLASKIEKAWKK 472 >gi|222151487|ref|YP_002560643.1| hypothetical protein MCCL_1240 [Macrococcus caseolyticus JCSC5402] gi|222120612|dbj|BAH17947.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 220 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 8/57 (14%) Query: 554 YSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607 S L+EI GIGP + + +++ K I E + I G+ KI + ++ Sbjct: 167 QSELEEIPGIGPKKAQDIIKYRTDNKGFKAI-----EEIKEIRGVGDKIYEGLKDYI 218 >gi|94499335|ref|ZP_01305873.1| DNA ligase, NAD-dependent [Oceanobacter sp. RED65] gi|94428967|gb|EAT13939.1| DNA ligase, NAD-dependent [Oceanobacter sp. RED65] Length = 694 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 26/52 (50%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L+Q F T++ + ++S + L ++ + +A I N F + + T Sbjct: 538 VGVATANNLVQHFLTIRALVKASFDELIEVDDVGPIVAEHILNFFAEPHNQT 589 >gi|227551295|ref|ZP_03981344.1| competence protein ComEA [Enterococcus faecium TX1330] gi|257887588|ref|ZP_05667241.1| competence protein ComEA [Enterococcus faecium 1,141,733] gi|257896084|ref|ZP_05675737.1| competence protein ComEA [Enterococcus faecium Com12] gi|293377501|ref|ZP_06623697.1| comEA protein [Enterococcus faecium PC4.1] gi|227179575|gb|EEI60547.1| competence protein ComEA [Enterococcus faecium TX1330] gi|257823642|gb|EEV50574.1| competence protein ComEA [Enterococcus faecium 1,141,733] gi|257832649|gb|EEV59070.1| competence protein ComEA [Enterococcus faecium Com12] gi|292643870|gb|EFF61984.1| comEA protein [Enterococcus faecium PC4.1] Length = 225 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 10/56 (17%) Query: 555 SPLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYNH 606 S L +I GIG ++ + +++ F G+ + + E L I GI +K K+ N Sbjct: 172 SELQQIPGIGSVKAQEIIR-FREENGSFQKV-----EDLQEISGIGEKTVEKLKNF 221 >gi|69247259|ref|ZP_00604277.1| Competence protein ComEA helix-hairpin-helix region [Enterococcus faecium DO] gi|314937551|ref|ZP_07844879.1| comEA protein [Enterococcus faecium TX0133a04] gi|314941458|ref|ZP_07848347.1| comEA protein [Enterococcus faecium TX0133C] gi|314949637|ref|ZP_07852958.1| comEA protein [Enterococcus faecium TX0082] gi|314951819|ref|ZP_07854857.1| comEA protein [Enterococcus faecium TX0133A] gi|314992765|ref|ZP_07858169.1| comEA protein [Enterococcus faecium TX0133B] gi|314996521|ref|ZP_07861559.1| comEA protein [Enterococcus faecium TX0133a01] gi|68194932|gb|EAN09401.1| Competence protein ComEA helix-hairpin-helix region [Enterococcus faecium DO] gi|313589307|gb|EFR68152.1| comEA protein [Enterococcus faecium TX0133a01] gi|313592698|gb|EFR71543.1| comEA protein [Enterococcus faecium TX0133B] gi|313595993|gb|EFR74838.1| comEA protein [Enterococcus faecium TX0133A] gi|313599710|gb|EFR78553.1| comEA protein [Enterococcus faecium TX0133C] gi|313643094|gb|EFS07674.1| comEA protein [Enterococcus faecium TX0133a04] gi|313643976|gb|EFS08556.1| comEA protein [Enterococcus faecium TX0082] Length = 242 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 10/59 (16%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYNH 606 A S L +I GIG ++ + +++ F G+ + + E L I GI +K K+ N Sbjct: 186 ATPSELQQIPGIGSVKAQEIIR-FREENGSFQKV-----EDLQEISGIGEKTVEKLKNF 238 >gi|310644729|ref|YP_003949488.1| excinuclease abc c subunit domain protein [Paenibacillus polymyxa SC2] gi|309249680|gb|ADO59247.1| Excinuclease ABC C subunit domain protein [Paenibacillus polymyxa SC2] Length = 118 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 2/79 (2%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 + G++ + +L+VGKA L+ RIK + N + ++ I + V Sbjct: 36 DKAGIFMFYNAQEELLFVGKARKLRPRIKKHFEDNVSPIKANR--KEVAIIEVCIVEDAV 93 Query: 68 EALLLEANMIKRLKPRFNI 86 + + E +I K ++N+ Sbjct: 94 DREIYETYIINSQKAKYNV 112 >gi|3041672|sp|P52026|DPO1_BACST RecName: Full=DNA polymerase I; Short=POL I Length = 876 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + GIG LL+ FGTV+ + +S + + +K+ + + Sbjct: 192 GVPGIGEKTAVKLLKQFGTVENVL-ASIDEIK-----GEKLKENLRQY 233 >gi|302348270|ref|YP_003815908.1| DNA repair and recombination protein radA [Acidilobus saccharovorans 345-15] gi|302328682|gb|ADL18877.1| DNA repair and recombination protein radA [Acidilobus saccharovorans 345-15] Length = 326 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 559 EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605 E+ G+GP L++S + T++ I+ ++P+ +A GI + A KI + Sbjct: 18 ELPGVGPTTAEKLVESGYATIEAIAVATPQEIAQATGIPLQTAQKIVD 65 >gi|806281|gb|AAC37139.1| DNA polymerase I [Geobacillus stearothermophilus] Length = 876 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + GIG LL+ FGTV+ + +S + + +K+ + + Sbjct: 192 GVPGIGEKTAVKLLKQFGTVENVL-ASIDEIK-----GEKLKENLRQY 233 >gi|755588|gb|AAA85558.1| DNA polymerase [Geobacillus stearothermophilus] Length = 954 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + GIG LL+ FGTV+ + +S + + +K+ + + Sbjct: 268 GVPGIGKKTAVKLLKQFGTVENVL-ASIDEIK-----GEKLKENLRQY 309 >gi|329939492|ref|ZP_08288828.1| DNA integrity scanning protein DisA [Streptomyces griseoaurantiacus M045] gi|329301721|gb|EGG45615.1| DNA integrity scanning protein DisA [Streptomyces griseoaurantiacus M045] Length = 374 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 20/38 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ FG ++ + +S + L +++G+ + A + Sbjct: 324 RLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 361 >gi|302559260|ref|ZP_07311602.1| DNA-binding protein [Streptomyces griseoflavus Tu4000] gi|302476878|gb|EFL39971.1| DNA-binding protein [Streptomyces griseoflavus Tu4000] Length = 374 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 20/38 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ FG ++ + +S + L +++G+ + A + Sbjct: 324 RLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 361 >gi|302553210|ref|ZP_07305552.1| DNA integrity scanning protein disA [Streptomyces viridochromogenes DSM 40736] gi|302470828|gb|EFL33921.1| DNA integrity scanning protein disA [Streptomyces viridochromogenes DSM 40736] Length = 374 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 20/38 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ FG ++ + +S + L +++G+ + A + Sbjct: 324 RLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 361 >gi|302521041|ref|ZP_07273383.1| DNA integrity scanning protein disA [Streptomyces sp. SPB78] gi|333025266|ref|ZP_08453330.1| putative DNA integrity scanning protein disA [Streptomyces sp. Tu6071] gi|302429936|gb|EFL01752.1| DNA integrity scanning protein disA [Streptomyces sp. SPB78] gi|332745118|gb|EGJ75559.1| putative DNA integrity scanning protein disA [Streptomyces sp. Tu6071] Length = 374 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 20/38 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ FG ++ + +S + L +++G+ + A + Sbjct: 324 RLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 361 >gi|318062065|ref|ZP_07980786.1| DNA integrity scanning protein DisA [Streptomyces sp. SA3_actG] gi|318080456|ref|ZP_07987788.1| DNA integrity scanning protein DisA [Streptomyces sp. SA3_actF] Length = 352 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 20/38 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ FG ++ + +S + L +++G+ + A + Sbjct: 302 RLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 339 >gi|295837244|ref|ZP_06824177.1| DNA-binding protein [Streptomyces sp. SPB74] gi|295826418|gb|EFG64835.1| DNA-binding protein [Streptomyces sp. SPB74] Length = 374 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 20/38 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ FG ++ + +S + L +++G+ + A + Sbjct: 324 RLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 361 >gi|294630669|ref|ZP_06709229.1| DNA-binding protein [Streptomyces sp. e14] gi|292834002|gb|EFF92351.1| DNA-binding protein [Streptomyces sp. e14] Length = 374 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 20/38 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ FG ++ + +S + L +++G+ + A + Sbjct: 324 RLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 361 >gi|291438054|ref|ZP_06577444.1| DNA integrity scanning protein disA [Streptomyces ghanaensis ATCC 14672] gi|291340949|gb|EFE67905.1| DNA integrity scanning protein disA [Streptomyces ghanaensis ATCC 14672] Length = 374 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 20/38 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ FG ++ + +S + L +++G+ + A + Sbjct: 324 RLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 361 >gi|290958386|ref|YP_003489568.1| DNA-binding protein [Streptomyces scabiei 87.22] gi|260647912|emb|CBG71017.1| putative DNA-binding protein [Streptomyces scabiei 87.22] Length = 345 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 20/38 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ FG ++ + +S + L +++G+ + A + Sbjct: 295 RLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 332 >gi|256787042|ref|ZP_05525473.1| DNA integrity scanning protein DisA [Streptomyces lividans TK24] Length = 352 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 20/38 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ FG ++ + +S + L +++G+ + A + Sbjct: 302 RLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 339 >gi|239980285|ref|ZP_04702809.1| DNA integrity scanning protein DisA [Streptomyces albus J1074] gi|291452149|ref|ZP_06591539.1| DNA-binding protein [Streptomyces albus J1074] gi|291355098|gb|EFE82000.1| DNA-binding protein [Streptomyces albus J1074] Length = 373 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 20/38 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ FG ++ + +S + L +++G+ + A + Sbjct: 323 RLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 360 >gi|239929729|ref|ZP_04686682.1| DNA integrity scanning protein DisA [Streptomyces ghanaensis ATCC 14672] Length = 352 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 20/38 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ FG ++ + +S + L +++G+ + A + Sbjct: 302 RLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 339 >gi|297201444|ref|ZP_06918841.1| DNA integrity scanning protein disA [Streptomyces sviceus ATCC 29083] gi|197713852|gb|EDY57886.1| DNA integrity scanning protein disA [Streptomyces sviceus ATCC 29083] Length = 374 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 20/38 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ FG ++ + +S + L +++G+ + A + Sbjct: 324 RLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 361 >gi|187609352|pdb|3C1Y|A Chain A, Structure Of Bacterial Dna Damage Sensor Protein With Co- Purified And Co-Crystallized Ligand gi|187609353|pdb|3C1Y|B Chain B, Structure Of Bacterial Dna Damage Sensor Protein With Co- Purified And Co-Crystallized Ligand gi|187609354|pdb|3C1Z|A Chain A, Structure Of The Ligand-Free Form Of A Bacterial Dna Damage Sensor Protein gi|187609355|pdb|3C1Z|B Chain B, Structure Of The Ligand-Free Form Of A Bacterial Dna Damage Sensor Protein gi|187609356|pdb|3C21|A Chain A, Structure Of A Bacterial Dna Damage Sensor Protein With Reaction Product gi|187609357|pdb|3C21|B Chain B, Structure Of A Bacterial Dna Damage Sensor Protein With Reaction Product gi|187609358|pdb|3C23|A Chain A, Structure Of A Bacterial Dna Damage Sensor Protein With Non- Reactive Ligand gi|187609359|pdb|3C23|B Chain B, Structure Of A Bacterial Dna Damage Sensor Protein With Non- Reactive Ligand Length = 377 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%) Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHF----HKNTSH 613 F T+ IS++S E L +EGI +K A I H+ TS Sbjct: 335 FKTLDQISKASVEDLKKVEGIGEKRARAISESISSLKHRKTSE 377 >gi|29831252|ref|NP_825886.1| DNA integrity scanning protein DisA [Streptomyces avermitilis MA-4680] gi|81718231|sp|Q82EA6|DISA_STRAW RecName: Full=DNA integrity scanning protein disA gi|29608367|dbj|BAC72421.1| putative DNA-binding protein [Streptomyces avermitilis MA-4680] Length = 374 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 20/38 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ FG ++ + +S + L +++G+ + A + Sbjct: 324 RLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 361 >gi|21221781|ref|NP_627560.1| DNA integrity scanning protein DisA [Streptomyces coelicolor A3(2)] gi|289770935|ref|ZP_06530313.1| DNA integrity scanning protein disA [Streptomyces lividans TK24] gi|81554055|sp|Q9X8L6|DISA_STRCO RecName: Full=DNA integrity scanning protein disA gi|4585584|emb|CAB40852.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)] gi|289701134|gb|EFD68563.1| DNA integrity scanning protein disA [Streptomyces lividans TK24] Length = 374 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 20/38 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ FG ++ + +S + L +++G+ + A + Sbjct: 324 RLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 361 >gi|325982988|ref|YP_004295390.1| DNA ligase, NAD-dependent [Nitrosomonas sp. AL212] gi|325532507|gb|ADZ27228.1| DNA ligase, NAD-dependent [Nitrosomonas sp. AL212] Length = 677 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 6/65 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ ++ L I +G + L G++ + + E L I + +A I Sbjct: 506 KSKHTTLARFIYALGIRNVGEATAKDLAAHCGSLDRLIEAGSERLQQIPDVGPVVAQSIA 565 Query: 605 NHFHK 609 + F + Sbjct: 566 DFFAE 570 >gi|206969091|ref|ZP_03230046.1| conserved hypothetical protein [Bacillus cereus AH1134] gi|206736132|gb|EDZ53290.1| conserved hypothetical protein [Bacillus cereus AH1134] Length = 213 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 20/102 (19%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G+Y + D ++YVGKA++++ R+ ++ +S ++ I + N + + V + Sbjct: 22 GIYFIKDYNDNIIYVGKAFSIKSRVLAHFNSYSN---IEEYVHLFNKVAYLVEDS----- 73 Query: 71 LLEANMIK-----RLKPRFNILLRDDKSFP-----YILITDK 102 LL+ ++++ + KP N + K FP YI T+K Sbjct: 74 LLKRSLLQVTYMIKYKPVLNKEV--QKEFPELYTQYIKQTNK 113 >gi|312870519|ref|ZP_07730638.1| DNA ligase (NAD+) [Lactobacillus oris PB013-T2-3] gi|311093981|gb|EFQ52306.1| DNA ligase (NAD+) [Lactobacillus oris PB013-T2-3] Length = 679 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 26/53 (49%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G RL+++ F ++ + +S + +A+++GI I + +F Sbjct: 522 GIRHVGAKAARLIMEHFQSLDRLLTASADEVAAVDGIGPTIGDSVQTYFANEQ 574 >gi|257898720|ref|ZP_05678373.1| competence protein ComEA [Enterococcus faecium Com15] gi|257836632|gb|EEV61706.1| competence protein ComEA [Enterococcus faecium Com15] Length = 225 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 10/56 (17%) Query: 555 SPLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYNH 606 S L +I GIG ++ + +++ F G+ + + E L I GI +K K+ N Sbjct: 172 SELQQIPGIGSVKAQEIIR-FREENGSFQKV-----EDLQEISGIGEKTVEKLKNF 221 >gi|149446363|ref|XP_001517592.1| PREDICTED: similar to DNA excision repair protein ERCC-1, partial [Ornithorhynchus anatinus] Length = 450 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 22/39 (56%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 LL +FG++ + +S E L+ G + A ++++ H+ Sbjct: 405 LLSTFGSLDQLVAASAEDLSLCPGFGPQKARRLFDTLHE 443 >gi|289644234|ref|ZP_06476323.1| DNA ligase, NAD-dependent [Frankia symbiont of Datisca glomerata] gi|289505957|gb|EFD26967.1| DNA ligase, NAD-dependent [Frankia symbiont of Datisca glomerata] Length = 713 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 27/49 (55%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L + +V I+ +S ETLA+++G+ IA + + F Sbjct: 536 SIRHVGPSAARALAREMRSVDAIAAASTETLAAVDGVGPTIAASVVDWF 584 >gi|1526547|dbj|BAA13425.1| DNA polymerase family X [Thermus aquaticus] Length = 320 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 7/66 (10%) Query: 548 RRKKAAYSPLD--EINGIGPLRKRLLLQSFG--TVKMISRSSPE--TLASIEGISKKIAC 601 K L+ E+ G+GP R L ++ G +++ + + E L ++G K A Sbjct: 84 LSGKVPRGVLEVMEVPGVGPKTARGLYEALGIDSLEKLKEA-LERGDLLRLKGFGAKKAE 142 Query: 602 KIYNHF 607 +I Sbjct: 143 RIKEGL 148 >gi|258616376|ref|ZP_05714146.1| competence protein comEA [Enterococcus faecium DO] gi|293563913|ref|ZP_06678336.1| competence protein comEA [Enterococcus faecium E1162] gi|294623504|ref|ZP_06702352.1| competence protein comEA [Enterococcus faecium U0317] gi|291597098|gb|EFF28301.1| competence protein comEA [Enterococcus faecium U0317] gi|291604146|gb|EFF33657.1| competence protein comEA [Enterococcus faecium E1162] Length = 238 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 10/59 (16%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYNH 606 A S L +I GIG ++ + +++ F G+ + + E L I GI +K K+ N Sbjct: 182 ATPSELQQIPGIGSVKAQEIIR-FREENGSFQKV-----EDLQEISGIGEKTVEKLKNF 234 >gi|289566282|ref|ZP_06446713.1| competence protein ComEA [Enterococcus faecium D344SRF] gi|294615865|ref|ZP_06695707.1| competence protein comEA [Enterococcus faecium E1636] gi|294617300|ref|ZP_06696941.1| putative competence protein ComEA [Enterococcus faecium E1679] gi|289161922|gb|EFD09791.1| competence protein ComEA [Enterococcus faecium D344SRF] gi|291591251|gb|EFF22918.1| competence protein comEA [Enterococcus faecium E1636] gi|291596457|gb|EFF27709.1| putative competence protein ComEA [Enterococcus faecium E1679] Length = 238 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 10/59 (16%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYNH 606 A S L +I GIG ++ + +++ F G+ + + E L I GI +K K+ N Sbjct: 182 ATPSELQQIPGIGSVKAQEIIR-FREENGSFQKV-----EDLQEISGIGEKTVEKLKNF 234 >gi|195436244|ref|XP_002066079.1| GK22170 [Drosophila willistoni] gi|194162164|gb|EDW77065.1| GK22170 [Drosophila willistoni] Length = 259 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 26/54 (48%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L I + LLQ+FG ++ + +S E L+ + G+ + A K+Y + Sbjct: 201 ALTNIKPVNKTDAVTLLQTFGNLENLINASEERLSQVMGLGPRKAKKLYKTLQE 254 >gi|332366947|gb|EGJ44687.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1059] Length = 652 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 31/55 (56%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G R+LL+ F + +S++S E +A+I+ + IA ++ +F + SH Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQEEIAAIDSLGTVIAQSLHTYFEQEGSH 556 >gi|319651430|ref|ZP_08005559.1| hypothetical protein HMPREF1013_02171 [Bacillus sp. 2_A_57_CT2] gi|317396961|gb|EFV77670.1| hypothetical protein HMPREF1013_02171 [Bacillus sp. 2_A_57_CT2] Length = 388 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMIS-RSSPETLASIEGISKKIACKI 603 PL+ I G+GP LL FGT I ++ + I +K A I Sbjct: 318 PLEFIPGLGPKMLEKLLNHFGTEMAILHDVPLSEISKV--IPEKTARLI 364 >gi|93005182|ref|YP_579619.1| DNA ligase, NAD-dependent [Psychrobacter cryohalolentis K5] gi|122989955|sp|Q1QDW8|DNLJ_PSYCK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|92392860|gb|ABE74135.1| DNA ligase, NAD-dependent [Psychrobacter cryohalolentis K5] Length = 691 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 19/50 (38%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I G+G + L Q FG + + +S E L + A Y F Sbjct: 538 GIRGVGETTAQNLAQQFGDLDALMSASIEKLLLTPDVGAITAELTYKFFR 587 >gi|332705189|ref|ZP_08425270.1| DNA ligase, NAD-dependent [Lyngbya majuscula 3L] gi|332355932|gb|EGJ35391.1| DNA ligase, NAD-dependent [Lyngbya majuscula 3L] Length = 1092 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 28/56 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + + L + F ++ +++++ + I I KIA + + F +++ T Sbjct: 790 GIRHVGSDKAKTLAKKFRNIEQLAQATIPDIEGIYSIGPKIAKSVRDWFQNSSNQT 845 Score = 44.7 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 32/56 (57%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + + L+Q+F T++ +++++ + I GI +IA ++ F +++ T Sbjct: 537 GIRHVGSVNAQTLVQTFPTIEQLAQATVTDIEGIYGIGPEIAQSVWGWFQISSNQT 592 Score = 44.7 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 32/56 (57%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + + L+Q+F T++ +++++ + I GI +IA ++ F +++ T Sbjct: 939 GIRHVGSVNAQTLVQTFPTIEQLAQATVTDIEGIYGIGPEIAQSVWGWFQISSNQT 994 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFG---TVKMISRSSPETLASIEGISKKIACKIYNHFH 608 A+ + LD ING+G L+ G +V + + E L S++GI K+A K+ N Sbjct: 718 ASRNALD-INGLGKKIIEQLVDQ-GLVTSVADLYDLTLEQLVSLKGIGYKLAQKLLNAIA 775 Query: 609 KNTSHT 614 K+ + Sbjct: 776 KSKTQP 781 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%) Query: 559 EINGIGPLRKRLLLQSFG---TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +ING+G L+ G +V + + E L S+ GI K+A K+ N K+ + Sbjct: 873 DINGLGKKIVEQLVDQ-GLVTSVADLYNLTLEQLVSLNGIGHKLAQKLLNAIAKSKTQP 930 >gi|302782932|ref|XP_002973239.1| hypothetical protein SELMODRAFT_98787 [Selaginella moellendorffii] gi|300158992|gb|EFJ25613.1| hypothetical protein SELMODRAFT_98787 [Selaginella moellendorffii] Length = 232 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 S L + I L +FG++ + +S E LA GI ++ ++Y+ FH+ Sbjct: 151 RLTSALTSVRHINKTDVVTLGSTFGSMASVMSASMEDLARCPGIGERKVKRLYDAFHE 208 >gi|317495223|ref|ZP_07953593.1| DNA ligase [Gemella moribillum M424] gi|316914645|gb|EFV36121.1| DNA ligase [Gemella moribillum M424] Length = 663 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 28/68 (41%), Gaps = 6/68 (8%) Query: 551 KAAYSPLDE------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 + S LD+ I +G ++L + + + S+++ + L + I A I Sbjct: 494 NSKQSSLDKVIFALGILNVGKKAGKILAEYYKNLTNFSKATVDELLELPDIGLITAESIV 553 Query: 605 NHFHKNTS 612 ++ + + Sbjct: 554 DYLSNDNN 561 >gi|295399055|ref|ZP_06809037.1| conserved hypothetical protein [Geobacillus thermoglucosidasius C56-YS93] gi|312110340|ref|YP_003988656.1| hypothetical protein GY4MC1_1238 [Geobacillus sp. Y4.1MC1] gi|294978521|gb|EFG54117.1| conserved hypothetical protein [Geobacillus thermoglucosidasius C56-YS93] gi|311215441|gb|ADP74045.1| hypothetical protein GY4MC1_1238 [Geobacillus sp. Y4.1MC1] Length = 387 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKI 603 PL+ I G+G LL FGT + ++ +++ E L I +K+A I Sbjct: 317 PLEFIPGLGAKTYEKLLARFGTEMYVLHQATEEELQE--SIGEKLANLI 363 >gi|226327976|ref|ZP_03803494.1| hypothetical protein PROPEN_01867 [Proteus penneri ATCC 35198] gi|225203680|gb|EEG86034.1| hypothetical protein PROPEN_01867 [Proteus penneri ATCC 35198] Length = 186 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 21/52 (40%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L F T++ + + E L + + +A + N F + + T Sbjct: 32 VGEATASGLTAHFSTLEALRNADVEALKLVPDVGDIVAKHVVNFFQEEHNRT 83 >gi|52548595|gb|AAU82444.1| recombinase [uncultured archaeon GZfos17F1] Length = 324 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKI 603 ++E+ G+GP L + F +V+ I+ +SP LA+ I + A KI Sbjct: 5 SIEELPGVGPATAEKLKDAGFNSVEAIAVASPSELAATAEIGESTAVKI 53 >gi|333024269|ref|ZP_08452333.1| putative NAD-dependent DNA ligase LigA [Streptomyces sp. Tu6071] gi|332744121|gb|EGJ74562.1| putative NAD-dependent DNA ligase LigA [Streptomyces sp. Tu6071] Length = 771 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 17/78 (21%) Query: 550 KKAAYSPLDEIN------------G-----IGPLRKRLLLQSFGTVKMISRSSPETLASI 592 KK S L+ I G +GP+ L + F ++ I + LA Sbjct: 558 KKNTLSMLENIEAAKQRPLAQILTGLSVRHVGPVAAAALAREFRSIDRIFAAEESELAET 617 Query: 593 EGISKKIACKIYNHFHKN 610 EG+ IA + + ++ Sbjct: 618 EGVGPTIAASLKQWYEED 635 >gi|318059490|ref|ZP_07978213.1| NAD-dependent DNA ligase LigA [Streptomyces sp. SA3_actG] gi|318076490|ref|ZP_07983822.1| NAD-dependent DNA ligase LigA [Streptomyces sp. SA3_actF] Length = 783 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 17/78 (21%) Query: 550 KKAAYSPLDEIN------------G-----IGPLRKRLLLQSFGTVKMISRSSPETLASI 592 KK S L+ I G +GP+ L + F ++ I + LA Sbjct: 558 KKNTLSMLENIEAAKQRPLAQILTGLSIRHVGPVAAAALAREFRSIDRIFAAEESELAET 617 Query: 593 EGISKKIACKIYNHFHKN 610 EG+ IA + + ++ Sbjct: 618 EGVGPTIAASLKQWYEED 635 >gi|258590885|emb|CBE67180.1| DNA processing chain A (DprA/Smf) [NC10 bacterium 'Dutch sediment'] Length = 379 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 27/47 (57%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 I +G L ++ G+V+ + R++ E LA + GIS+++A I + Sbjct: 20 IPEVGSATFYRLREALGSVEAVLRANKEALAQVPGISRQVAQAIASF 66 >gi|302522063|ref|ZP_07274405.1| DNA ligase, NAD-dependent [Streptomyces sp. SPB78] gi|302430958|gb|EFL02774.1| DNA ligase, NAD-dependent [Streptomyces sp. SPB78] Length = 783 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 17/78 (21%) Query: 550 KKAAYSPLDEIN------------G-----IGPLRKRLLLQSFGTVKMISRSSPETLASI 592 KK S L+ I G +GP+ L + F ++ I + LA Sbjct: 558 KKNTLSMLENIEAAKQRPLAQILTGLSIRHVGPVAAAALAREFRSIDRIFAAEESELAET 617 Query: 593 EGISKKIACKIYNHFHKN 610 EG+ IA + + ++ Sbjct: 618 EGVGPTIAASLKQWYEED 635 >gi|330508608|ref|YP_004385036.1| DNA repair and recombination protein RadA [Methanosaeta concilii GP-6] gi|328929416|gb|AEB69218.1| DNA repair and recombination protein RadA [Methanosaeta concilii GP-6] Length = 325 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKI 603 L+++ G+GP L ++ F +++ I+ +SP L S + + A KI Sbjct: 6 LEDLPGVGPATAEKLREAGFNSIEAIAVASPGELVSAAEVGEATAAKI 53 >gi|188586006|ref|YP_001917551.1| DNA protecting protein DprA [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350693|gb|ACB84963.1| DNA protecting protein DprA [Natranaerobius thermophilus JW/NM-WN-LF] Length = 349 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 26/50 (52%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 L I G+G R + L+Q FG + + SS E L + GIS +A I H Sbjct: 3 LKLIPGLGNNRIKKLIQWFGCGEEVWNSSIENLLEVSGISYDLAENIVVH 52 >gi|256831732|ref|YP_003160459.1| hypothetical protein Jden_0492 [Jonesia denitrificans DSM 20603] gi|256685263|gb|ACV08156.1| protein of unknown function DUF147 [Jonesia denitrificans DSM 20603] Length = 362 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 21/38 (55%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L+Q FG ++ + ++ + L +++G+ ++ A + Sbjct: 312 RLVQHFGGLQKLLAATIDDLMAVDGVGEQRARAVREGL 349 >gi|169335238|ref|ZP_02862431.1| hypothetical protein ANASTE_01646 [Anaerofustis stercorihominis DSM 17244] gi|169257976|gb|EDS71942.1| hypothetical protein ANASTE_01646 [Anaerofustis stercorihominis DSM 17244] Length = 659 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 6/65 (9%) Query: 551 KAAYSPLDE------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L++ IN +G +LL + F T+ + +S E + I I K+A +I Sbjct: 495 KSKENSLEDLLFALSINLVGKQGAKLLAKRFKTMDNLINASYEDIVDINEIGDKMATEII 554 Query: 605 NHFHK 609 N F Sbjct: 555 NFFKN 559 >gi|331266328|ref|YP_004325958.1| DNA ligase, NAD-dependent [Streptococcus oralis Uo5] gi|326683000|emb|CBZ00617.1| DNA ligase, NAD-dependent [Streptococcus oralis Uo5] Length = 652 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 29/49 (59%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G +LLLQ F ++K ++++ PE +ASIE + IA + +F Sbjct: 502 GIRHVGSKASQLLLQHFHSIKNLAQADPEEVASIESLGSVIAQSLQTYF 550 >gi|88697143|gb|ABD48716.1| thermostable DNA polymerase I [Geobacillus sp. LH8] Length = 876 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + GIG LL+ FGTV+ + +S + + +K+ + + Sbjct: 192 GVPGIGEKTAVKLLKQFGTVENVL-ASIDEIK-----GEKLKENLRQY 233 >gi|269794026|ref|YP_003313481.1| nucleic-acid-binding protein [Sanguibacter keddieii DSM 10542] gi|269096211|gb|ACZ20647.1| predicted nucleic-acid-binding protein (contains the HHH domain) [Sanguibacter keddieii DSM 10542] Length = 361 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 20/38 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L+ FG ++ + ++ E L +++G+ ++ A + Sbjct: 311 RLVSHFGGLQKLLAATVEDLMAVDGVGEQRARSVREGL 348 >gi|15642973|ref|NP_228015.1| DNA integrity scanning protein DisA [Thermotoga maritima MSB8] gi|81552974|sp|Q9WY43|DISA_THEMA RecName: Full=DNA integrity scanning protein disA gi|4980697|gb|AAD35292.1|AE001705_3 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 357 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%) Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHF----HKNTSH 613 F T+ IS++S E L +EGI +K A I H+ TS Sbjct: 315 FKTLDQISKASVEDLKKVEGIGEKRARAISESISSLKHRKTSE 357 >gi|332703906|ref|ZP_08423994.1| helicase, RecD/TraA family [Desulfovibrio africanus str. Walvis Bay] gi|332554055|gb|EGJ51099.1| helicase, RecD/TraA family [Desulfovibrio africanus str. Walvis Bay] Length = 751 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYN 605 + S L I G+GP L+ +FGT V I S PE L ++GI KK +I Sbjct: 102 RYLSSGL--IKGVGPKTAEALVATFGTAVLDIIESEPERLLEVDGIGKKTLERIRE 155 >gi|197121145|ref|YP_002133096.1| DNA ligase, NAD-dependent [Anaeromyxobacter sp. K] gi|254781542|sp|B4UDH6|DNLJ_ANASK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|196170994|gb|ACG71967.1| DNA ligase, NAD-dependent [Anaeromyxobacter sp. K] Length = 687 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 2/60 (3%) Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 RK L I +G L + FG + + + E L + + + A +I Sbjct: 524 RKTTLRRFLFALGIPQVGEATAATLARHFGGLARVMDADEEALKGVRDVGPETAAEIRAW 583 >gi|83319601|ref|YP_424672.1| DNA ligase, NAD-dependent [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|123740036|sp|Q2SRE1|DNLJ_MYCCT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|83283487|gb|ABC01419.1| DNA ligase, NAD-dependent [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 668 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 24/54 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I IG ++L + + + + ++S + L I I + +A I + F + Sbjct: 513 GIRHIGSKTAKILARKYQNIDNLMKASYDELIQINSIGESLALSIIDWFKIEDN 566 >gi|289432459|ref|YP_003462332.1| DNA repair protein RadC [Dehalococcoides sp. GT] gi|288946179|gb|ADC73876.1| DNA repair protein RadC [Dehalococcoides sp. GT] Length = 228 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 21/39 (53%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + L+ FG I+ +S E L+ ++GI AC++ F Sbjct: 52 QRLIAHFGGPSGIACASVEELSKLKGIGLAKACQLKAAF 90 >gi|229151316|ref|ZP_04279521.1| hypothetical protein bcere0011_28630 [Bacillus cereus m1550] gi|228632161|gb|EEK88785.1| hypothetical protein bcere0011_28630 [Bacillus cereus m1550] Length = 213 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 22/31 (70%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS 41 G+Y + D ++YVGKA++++ R+ ++ +S Sbjct: 22 GIYFIKDYNDNIIYVGKAFSIKSRVLAHFNS 52 >gi|82395938|gb|ABB72056.1| thermostable DNA polymerase I [Geobacillus sp. MKK-2005] Length = 876 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + GIG LL+ FGTV+ + +S + + +K+ + + Sbjct: 192 GVPGIGEKTAVKLLKQFGTVENVL-ASIDEIK-----GEKLKENLRQY 233 >gi|73748411|ref|YP_307650.1| RadC family DNA repair protein [Dehalococcoides sp. CBDB1] gi|73660127|emb|CAI82734.1| DNA repair protein, RadC family [Dehalococcoides sp. CBDB1] Length = 219 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 21/39 (53%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + L+ FG I+ +S E L+ ++GI AC++ F Sbjct: 43 QRLIAHFGGPSGIACASVEELSKLKGIGLAKACQLKAAF 81 >gi|147669191|ref|YP_001214009.1| DNA repair protein RadC [Dehalococcoides sp. BAV1] gi|146270139|gb|ABQ17131.1| DNA replication and repair protein RadC [Dehalococcoides sp. BAV1] Length = 228 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 21/39 (53%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + L+ FG I+ +S E L+ ++GI AC++ F Sbjct: 52 QRLIAHFGGPSGIACASVEELSKLKGIGLAKACQLKAAF 90 >gi|209360708|gb|ACI43006.1| DNA polymerase I [Anoxybacillus sp. NB] Length = 878 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + GIG LL+ FGTV+ + +S + + +K+ + + Sbjct: 194 GVPGIGEKTAVKLLKQFGTVENVL-ASIDEIK-----GEKLKENLRQY 235 >gi|110630020|gb|ABG80522.1| DNA polymerase I [Geobacillus anatolicus] gi|209360702|gb|ACI43003.1| DNA polymerase I [Geobacillus kaue] Length = 878 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + GIG LL+ FGTV+ + +S + + +K+ + + Sbjct: 194 GVPGIGEKTAVKLLKQFGTVENVL-ASIDEIK-----GEKLKENLRQY 235 >gi|256383839|gb|ACU78409.1| DNA ligase, NAD-dependent [Mycoplasma mycoides subsp. capri str. GM12] gi|256384670|gb|ACU79239.1| DNA ligase, NAD-dependent [Mycoplasma mycoides subsp. capri str. GM12] gi|296455996|gb|ADH22231.1| DNA ligase, NAD-dependent [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 668 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 24/54 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I IG ++L + + + + ++S + L I I + +A I + F + Sbjct: 513 GIRHIGSKTAKILARKYQNIDNLMKASYDELIQINSIGESLALSIIDWFKIEDN 566 >gi|209360706|gb|ACI43005.1| DNA polymerase I [Geobacillus kaue] Length = 878 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + GIG LL+ FGTV+ + +S + + +K+ + + Sbjct: 194 GVPGIGEKTAVKLLKQFGTVENVL-ASIDEIK-----GEKLKENLRQY 235 >gi|209360698|gb|ACI43001.1| DNA polymerase I [Geobacillus kaue] Length = 878 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + GIG LL+ FGTV+ + +S + + +K+ + + Sbjct: 194 GVPGIGEKTAVKLLKQFGTVENVL-ASIDEIK-----GEKLKENLRQY 235 >gi|312888786|ref|ZP_07748349.1| DNA ligase, NAD-dependent [Mucilaginibacter paludis DSM 18603] gi|311298661|gb|EFQ75767.1| DNA ligase, NAD-dependent [Mucilaginibacter paludis DSM 18603] Length = 675 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 23/44 (52%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 +G R L+ F + + +++ E L +++ I +IA + ++ Sbjct: 520 VGETVARKLVAYFKNIDNLMKANIEELTTVDEIGTRIAESLVDY 563 >gi|209360704|gb|ACI43004.1| DNA polymerase I [Geobacillus anatolicus] Length = 878 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + GIG LL+ FGTV+ + +S + + +K+ + + Sbjct: 194 GVPGIGEKTAVKLLKQFGTVENVL-ASIDEIK-----GEKLKENLRQY 235 >gi|228966071|ref|ZP_04127134.1| hypothetical protein bthur0004_28870 [Bacillus thuringiensis serovar sotto str. T04001] gi|228793556|gb|EEM41096.1| hypothetical protein bthur0004_28870 [Bacillus thuringiensis serovar sotto str. T04001] Length = 207 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 22/31 (70%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS 41 G+Y + D ++YVGKA++++ R+ ++ +S Sbjct: 16 GIYFIKDYNDNIIYVGKAFSIKSRVLAHFNS 46 >gi|39997645|ref|NP_953596.1| DNA processing protein DprA [Geobacter sulfurreducens PCA] gi|39984537|gb|AAR35923.1| DNA processing protein DprA [Geobacter sulfurreducens PCA] gi|298506585|gb|ADI85308.1| DNA uptake/processing protein SMF [Geobacter sulfurreducens KN400] Length = 356 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 27/51 (52%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 L + +G + R LL FG+ + + R+S LAS+ G+S +A I H Sbjct: 6 ALRSVPLVGNVLYRRLLDRFGSPEAVFRASDAELASVRGVSSAVAASIRGH 56 >gi|218898198|ref|YP_002446609.1| hypothetical protein BCG9842_B2107 [Bacillus cereus G9842] gi|228904984|ref|ZP_04069031.1| hypothetical protein bthur0014_61040 [Bacillus thuringiensis IBL 4222] gi|218544341|gb|ACK96735.1| conserved hypothetical protein [Bacillus cereus G9842] gi|228854654|gb|EEM99265.1| hypothetical protein bthur0014_61040 [Bacillus thuringiensis IBL 4222] Length = 213 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 22/31 (70%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS 41 G+Y + D ++YVGKA++++ R+ ++ +S Sbjct: 22 GIYFIKDYNDNIIYVGKAFSIKSRVLAHFNS 52 >gi|71064896|ref|YP_263623.1| NAD dependent DNA ligase [Psychrobacter arcticus 273-4] gi|123734475|sp|Q4FUW9|DNLJ_PSYA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|71037881|gb|AAZ18189.1| probable NAD dependent DNA ligase [Psychrobacter arcticus 273-4] Length = 691 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 19/50 (38%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I G+G + L Q FG + + +S E L + A Y F Sbjct: 538 GIRGVGETTAQNLAQQFGDLDALMSASIEKLLLTPDVGAITAELAYKFFR 587 >gi|228908883|ref|ZP_04072714.1| hypothetical protein bthur0013_30400 [Bacillus thuringiensis IBL 200] gi|228850750|gb|EEM95573.1| hypothetical protein bthur0013_30400 [Bacillus thuringiensis IBL 200] Length = 207 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 22/31 (70%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS 41 G+Y + D ++YVGKA++++ R+ ++ +S Sbjct: 16 GIYFIKDYNDNIIYVGKAFSIKSRVLAHFNS 46 >gi|229080299|ref|ZP_04212824.1| hypothetical protein bcere0023_29460 [Bacillus cereus Rock4-2] gi|229179401|ref|ZP_04306754.1| hypothetical protein bcere0005_27500 [Bacillus cereus 172560W] gi|229191218|ref|ZP_04318206.1| hypothetical protein bcere0002_28830 [Bacillus cereus ATCC 10876] gi|228592233|gb|EEK50064.1| hypothetical protein bcere0002_28830 [Bacillus cereus ATCC 10876] gi|228603902|gb|EEK61370.1| hypothetical protein bcere0005_27500 [Bacillus cereus 172560W] gi|228702968|gb|EEL55429.1| hypothetical protein bcere0023_29460 [Bacillus cereus Rock4-2] Length = 213 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 22/31 (70%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS 41 G+Y + D ++YVGKA++++ R+ ++ +S Sbjct: 22 GIYFIKDYNDNIIYVGKAFSIKSRVLAHFNS 52 >gi|170288545|ref|YP_001738783.1| hypothetical protein TRQ2_0748 [Thermotoga sp. RQ2] gi|170176048|gb|ACB09100.1| protein of unknown function DUF147 [Thermotoga sp. RQ2] Length = 352 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%) Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHF----HKNTSH 613 F T+ IS++S E L +EGI +K A I H+ TS Sbjct: 310 FKTLDQISKASVEDLKKVEGIGEKRARAISESISSLKHRKTSE 352 >gi|311896823|dbj|BAJ29231.1| putative DNA integrity scanning protein [Kitasatospora setae KM-6054] Length = 368 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 19/40 (47%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L+ FG ++ + +S + L ++EG+ + A + Sbjct: 316 IERLVDHFGGLQKLLAASIDDLQTVEGVGETRARSVREGL 355 >gi|209360700|gb|ACI43002.1| DNA polymerase I [Geobacillus bogazici] Length = 878 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + GIG LL+ FGTV+ + +S + + +K+ + + Sbjct: 194 GVPGIGEKTAVKLLKQFGTVENVL-ASIDEIK-----GEKLKENLRQY 235 >gi|167751779|ref|ZP_02423906.1| hypothetical protein ALIPUT_00019 [Alistipes putredinis DSM 17216] gi|167660694|gb|EDS04824.1| hypothetical protein ALIPUT_00019 [Alistipes putredinis DSM 17216] Length = 323 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 21/45 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + L F T+ + ++ E L + + KIA I ++F Sbjct: 72 VGETTAKYLAAHFRTLDAVMHATREELIEADEVGGKIADAIIDYF 116 >gi|153952836|ref|YP_001393601.1| DNA integrity scanning protein DisA [Clostridium kluyveri DSM 555] gi|189083127|sp|A5N4M2|DISA_CLOK5 RecName: Full=DNA integrity scanning protein disA gi|146345717|gb|EDK32253.1| Predicted DNA-binding protein [Clostridium kluyveri DSM 555] Length = 354 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 25/53 (47%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L +I I L+++F +K I +S E L +EGI + A I N + Sbjct: 291 LSKIPRIPATVMDNLVKNFKELKEIMEASYEDLDRVEGIGEARARAIKNGLRR 343 >gi|255971181|ref|ZP_05421767.1| NAD-dependent DNA ligase [Enterococcus faecalis T1] gi|255962199|gb|EET94675.1| NAD-dependent DNA ligase [Enterococcus faecalis T1] Length = 676 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 27/53 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G ++L + FG + +SR++ E + +++ I + IA + +F Sbjct: 516 GIRHVGAKAAKILAEHFGDLPTLSRATAEEIVALDSIGETIADSVVTYFENEE 568 >gi|256828012|ref|YP_003156740.1| RecD/TraA family helicase [Desulfomicrobium baculatum DSM 4028] gi|256577188|gb|ACU88324.1| helicase, RecD/TraA family [Desulfomicrobium baculatum DSM 4028] Length = 724 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Query: 560 INGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + GIG L+ FG+ + I S PE L +EGI I + + + Sbjct: 90 VKGIGEKTADRLISRFGSQILDIMDSDPEQLLEVEGIGPAKLKTIVSSWQE 140 >gi|183220911|ref|YP_001838907.1| transcription elongation factor NusA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911007|ref|YP_001962562.1| transcription elongation factor NusA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775683|gb|ABZ93984.1| Transcription elongation factor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779333|gb|ABZ97631.1| N utilization substance protein A [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 466 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 5/60 (8%) Query: 554 YSPLDEINGIGPLRKRLLLQSFGTVKMISRS---SPETLASIEGISKKIACKIYNHFHKN 610 ++PL EI G+ P R LL++ G +K + S E L+ I GI K A +I ++ Sbjct: 402 FTPLSEIPGLTP-RIVGLLEA-GGIKNVETLLEFSQEELSKISGIGKTTAEQILRLLRES 459 >gi|329576880|gb|EGG58365.1| DNA ligase [Enterococcus faecalis TX1467] Length = 676 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 27/53 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G ++L + FG + +SR++ E + +++ I + IA + +F Sbjct: 516 GIRHVGAKAAKILAEHFGDLPTLSRATAEEIVALDSIGETIADSVVTYFENEE 568 >gi|261418366|ref|YP_003252048.1| DNA repair protein RadC [Geobacillus sp. Y412MC61] gi|319767675|ref|YP_004133176.1| DNA repair protein RadC [Geobacillus sp. Y412MC52] gi|261374823|gb|ACX77566.1| DNA repair protein RadC [Geobacillus sp. Y412MC61] gi|317112541|gb|ADU95033.1| DNA repair protein RadC [Geobacillus sp. Y412MC52] Length = 226 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 20/39 (51%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + LL+ F ++ + ++ E + +I+GI A +I Sbjct: 50 QRLLRHFEGLRSLKDATVEEMTNIKGIGPTKAVQILAAL 88 >gi|167752039|ref|ZP_02424166.1| hypothetical protein ALIPUT_00281 [Alistipes putredinis DSM 17216] gi|167660280|gb|EDS04410.1| hypothetical protein ALIPUT_00281 [Alistipes putredinis DSM 17216] Length = 712 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 21/45 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + L F T+ + ++ E L + + KIA I ++F Sbjct: 523 VGETTAKYLAAHFRTLDAVMHATREELIEADEVGGKIADAIIDYF 567 >gi|293571939|ref|ZP_06682953.1| ComE operon protein 1 [Enterococcus faecium E980] gi|291607957|gb|EFF37265.1| ComE operon protein 1 [Enterococcus faecium E980] Length = 192 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 10/56 (17%) Query: 555 SPLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYNH 606 S L +I GIG ++ + +++ F G+ + + E L I GI +K K+ N Sbjct: 139 SELQQIPGIGSVKAQEIIR-FREENGSFQKV-----EDLQEISGIGEKTVEKLKNF 188 >gi|254776288|ref|ZP_05217804.1| NAD-dependent DNA ligase LigA [Mycobacterium avium subsp. avium ATCC 25291] Length = 681 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 24/49 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG + I +S E LA++EG+ IA + F Sbjct: 521 SIRHVGPTAARALATEFGDLDSIMSASTERLAAVEGVGPTIAAALTEWF 569 >gi|253689765|ref|YP_003018955.1| DNA ligase, NAD-dependent [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756343|gb|ACT14419.1| DNA ligase, NAD-dependent [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 681 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 24/52 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L FG+++ + + ETL ++ + K +A + + + + T Sbjct: 527 VGESTAANLAAHFGSLEALFAADEETLLAVPDVGKVVAAHVRHFLEEEHNQT 578 >gi|261367039|ref|ZP_05979922.1| DNA repair protein RadC [Subdoligranulum variabile DSM 15176] gi|282571158|gb|EFB76693.1| DNA repair protein RadC [Subdoligranulum variabile DSM 15176] Length = 244 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 18/34 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 L+Q FG + + PE L ++GI +K A I Sbjct: 54 RLIQHFGDFCKVMEADPEELKQVKGIGEKSARLI 87 >gi|219853501|ref|YP_002470623.1| hypothetical protein CKR_0158 [Clostridium kluyveri NBRC 12016] gi|219567225|dbj|BAH05209.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 360 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 25/53 (47%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L +I I L+++F +K I +S E L +EGI + A I N + Sbjct: 297 LSKIPRIPATVMDNLVKNFKELKEIMEASYEDLDRVEGIGEARARAIKNGLRR 349 >gi|125718295|ref|YP_001035428.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK36] gi|166216249|sp|A3CNX3|DNLJ_STRSV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|125498212|gb|ABN44878.1| DNA ligase, putative [Streptococcus sanguinis SK36] Length = 652 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%) Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 AI +K + L I +G R+LL+ F + +S++S E +A+I+ + IA Sbjct: 485 AIQASKKNSAERLLFGL-GIRHVGSKASRILLEKFHDIPRLSQASQEEIAAIDSLGTVIA 543 Query: 601 CKIYNHFHKNTSH 613 ++ +F + S Sbjct: 544 QSLHTYFEQEGSQ 556 >gi|118465270|ref|YP_883031.1| NAD-dependent DNA ligase LigA [Mycobacterium avium 104] gi|166215821|sp|A0QJE3|DNLJ_MYCA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|118166557|gb|ABK67454.1| DNA ligase, NAD-dependent [Mycobacterium avium 104] Length = 693 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 24/49 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG + I +S E LA++EG+ IA + F Sbjct: 533 SIRHVGPTAARALATEFGDLDSIMSASTERLAAVEGVGPTIAAALTEWF 581 >gi|307330425|ref|ZP_07609569.1| DNA integrity scanning, DisA, linker region [Streptomyces violaceusniger Tu 4113] gi|306883942|gb|EFN14984.1| DNA integrity scanning, DisA, linker region [Streptomyces violaceusniger Tu 4113] Length = 368 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 19/40 (47%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ FG ++ + +S + L ++G+ + A + Sbjct: 316 IERLVEHFGGLQKLLAASVDDLQMVDGVGEARARSVREGL 355 >gi|302543540|ref|ZP_07295882.1| putative DNA-binding protein [Streptomyces hygroscopicus ATCC 53653] gi|302461158|gb|EFL24251.1| putative DNA-binding protein [Streptomyces himastatinicus ATCC 53653] Length = 368 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 19/40 (47%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ FG ++ + +S + L ++G+ + A + Sbjct: 316 IERLVEHFGGLQKLLAASVDDLQMVDGVGEARARSVREGL 355 >gi|297159389|gb|ADI09101.1| DNA integrity scanning protein DisA [Streptomyces bingchenggensis BCW-1] Length = 368 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 19/40 (47%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ FG ++ + +S + L ++G+ + A + Sbjct: 316 IERLVEHFGGLQKLLAASVDDLQMVDGVGEARARSVREGL 355 >gi|291536367|emb|CBL09479.1| DNA ligase, NAD-dependent [Roseburia intestinalis M50/1] Length = 671 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 8/54 (14%), Positives = 24/54 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G + +++ F ++ + + + L ++ + + A I+ FH + Sbjct: 513 GIPNVGKAAAKTIMKRFSSILDLEDADRDALMEVDDVGEVSADCIFRFFHDEKN 566 >gi|222613143|gb|EEE51275.1| hypothetical protein OsJ_32175 [Oryza sativa Japonica Group] Length = 430 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 21/35 (60%) Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 FG++ + +S E LA GI ++ ++++ FH+ Sbjct: 304 FGSLSQVMNASMEELARCPGIGERKVKRLHDTFHE 338 >gi|73980826|ref|XP_540176.2| PREDICTED: similar to DNA excision repair protein ERCC-1 [Canis familiaris] Length = 461 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 25/41 (60%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + LL +FG+++ + +S E LA G+ + A ++++ H+ Sbjct: 414 QTLLTTFGSLEQLMTASREDLALCPGLGPQKAWRLFDVLHE 454 >gi|315145225|gb|EFT89241.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX2141] Length = 676 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 27/53 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G ++L + FG + +SR++ E + +++ I + IA + +F Sbjct: 516 GIRHVGAKAAKILAEHFGDLPTLSRATAEEIVALDSIGETIADSVVTYFENEE 568 >gi|312900318|ref|ZP_07759629.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0470] gi|311292506|gb|EFQ71062.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0470] Length = 676 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 27/53 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G ++L + FG + +SR++ E + +++ I + IA + +F Sbjct: 516 GIRHVGAKAAKILAEHFGDLPTLSRATAEEIVALDSIGETIADSVVTYFENEE 568 >gi|307269776|ref|ZP_07551106.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX4248] gi|306513886|gb|EFM82488.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX4248] Length = 676 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 27/53 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G ++L + FG + +SR++ E + +++ I + IA + +F Sbjct: 516 GIRHVGAKAAKILAEHFGDLPTLSRATAEEIVALDSIGETIADSVVTYFENEE 568 >gi|256957407|ref|ZP_05561578.1| NAD-dependent DNA ligase [Enterococcus faecalis DS5] gi|257077597|ref|ZP_05571958.1| NAD-dependent DNA ligase [Enterococcus faecalis JH1] gi|294779927|ref|ZP_06745308.1| DNA ligase (NAD(+)) [Enterococcus faecalis PC1.1] gi|256947903|gb|EEU64535.1| NAD-dependent DNA ligase [Enterococcus faecalis DS5] gi|256985627|gb|EEU72929.1| NAD-dependent DNA ligase [Enterococcus faecalis JH1] gi|294452976|gb|EFG21397.1| DNA ligase (NAD(+)) [Enterococcus faecalis PC1.1] gi|295114065|emb|CBL32702.1| DNA ligase, NAD-dependent [Enterococcus sp. 7L76] gi|315036101|gb|EFT48033.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0027] gi|315172192|gb|EFU16209.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX1346] Length = 676 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 27/53 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G ++L + FG + +SR++ E + +++ I + IA + +F Sbjct: 516 GIRHVGAKAAKILAEHFGDLPTLSRATAEEIVALDSIGETIADSVVTYFENEE 568 >gi|255973805|ref|ZP_05424391.1| NAD-dependent DNA ligase [Enterococcus faecalis T2] gi|256964440|ref|ZP_05568611.1| NAD-dependent DNA ligase [Enterococcus faecalis HIP11704] gi|257080988|ref|ZP_05575349.1| NAD-dependent DNA ligase [Enterococcus faecalis E1Sol] gi|307272536|ref|ZP_07553789.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0855] gi|307284516|ref|ZP_07564678.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0860] gi|255966677|gb|EET97299.1| NAD-dependent DNA ligase [Enterococcus faecalis T2] gi|256954936|gb|EEU71568.1| NAD-dependent DNA ligase [Enterococcus faecalis HIP11704] gi|256989018|gb|EEU76320.1| NAD-dependent DNA ligase [Enterococcus faecalis E1Sol] gi|306503193|gb|EFM72447.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0860] gi|306510821|gb|EFM79838.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0855] gi|315151576|gb|EFT95592.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0012] gi|315170712|gb|EFU14729.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX1342] gi|327534312|gb|AEA93146.1| NAD-dependent DNA ligase LigA [Enterococcus faecalis OG1RF] Length = 676 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 27/53 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G ++L + FG + +SR++ E + +++ I + IA + +F Sbjct: 516 GIRHVGAKAAKILAEHFGDLPTLSRATAEEIVALDSIGETIADSVVTYFENEE 568 >gi|300861866|ref|ZP_07107946.1| DNA ligase (NAD(+)) [Enterococcus faecalis TUSoD Ef11] gi|300848391|gb|EFK76148.1| DNA ligase (NAD(+)) [Enterococcus faecalis TUSoD Ef11] Length = 676 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 27/53 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G ++L + FG + +SR++ E + +++ I + IA + +F Sbjct: 516 GIRHVGAKAAKILAEHFGDLPTLSRATAEEIVALDSIGETIADSVVTYFENEE 568 >gi|229546559|ref|ZP_04435284.1| NAD-dependent DNA ligase [Enterococcus faecalis TX1322] gi|256854411|ref|ZP_05559775.1| DNA ligase [Enterococcus faecalis T8] gi|307274689|ref|ZP_07555861.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX2134] gi|307296388|ref|ZP_07576212.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0411] gi|229308304|gb|EEN74291.1| NAD-dependent DNA ligase [Enterococcus faecalis TX1322] gi|256709971|gb|EEU25015.1| DNA ligase [Enterococcus faecalis T8] gi|306496043|gb|EFM65628.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0411] gi|306508618|gb|EFM77716.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX2134] gi|315029103|gb|EFT41035.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX4000] gi|315157732|gb|EFU01749.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0312] gi|323479918|gb|ADX79357.1| DNA ligase, NAD-dependent [Enterococcus faecalis 62] Length = 676 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 27/53 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G ++L + FG + +SR++ E + +++ I + IA + +F Sbjct: 516 GIRHVGAKAAKILAEHFGDLPTLSRATAEEIVALDSIGETIADSVVTYFENEE 568 >gi|291456400|ref|ZP_06595790.1| DNA ligase, NAD-dependent [Bifidobacterium breve DSM 20213] gi|291381677|gb|EFE89195.1| DNA ligase, NAD-dependent [Bifidobacterium breve DSM 20213] Length = 930 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 26/45 (57%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +GP RL+ + G++ I ++ E L +I+G+ +IA + N F Sbjct: 774 LGPPTARLIASAMGSLGAIENATVEDLTAIDGVGPEIAESVVNWF 818 >gi|29375318|ref|NP_814472.1| DNA ligase, NAD-dependent [Enterococcus faecalis V583] gi|227554838|ref|ZP_03984885.1| DNA ligase, NAD-dependent [Enterococcus faecalis HH22] gi|256761492|ref|ZP_05502072.1| NAD-dependent DNA ligase [Enterococcus faecalis T3] gi|257415292|ref|ZP_05592286.1| NAD-dependent DNA ligase [Enterococcus faecalis AR01/DG] gi|257418334|ref|ZP_05595328.1| NAD-dependent DNA ligase [Enterococcus faecalis T11] gi|81437298|sp|Q837V6|DNLJ_ENTFA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|29342778|gb|AAO80542.1| DNA ligase, NAD-dependent [Enterococcus faecalis V583] gi|227176007|gb|EEI56979.1| DNA ligase, NAD-dependent [Enterococcus faecalis HH22] gi|256682743|gb|EEU22438.1| NAD-dependent DNA ligase [Enterococcus faecalis T3] gi|257157120|gb|EEU87080.1| NAD-dependent DNA ligase [Enterococcus faecalis ARO1/DG] gi|257160162|gb|EEU90122.1| NAD-dependent DNA ligase [Enterococcus faecalis T11] gi|315031451|gb|EFT43383.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0017] gi|315166929|gb|EFU10946.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX1341] gi|315575350|gb|EFU87541.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0309B] gi|315581380|gb|EFU93571.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0309A] Length = 676 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 27/53 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G ++L + FG + +SR++ E + +++ I + IA + +F Sbjct: 516 GIRHVGAKAAKILAEHFGDLPTLSRATAEEIVALDSIGETIADSVVTYFENEE 568 >gi|315161924|gb|EFU05941.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0645] Length = 676 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 27/53 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G ++L + FG + +SR++ E + +++ I + IA + +F Sbjct: 516 GIRHVGAKAAKILAEHFGDLPTLSRATAEEIVALDSIGETIADSVVTYFENEE 568 >gi|257086082|ref|ZP_05580443.1| NAD-dependent DNA ligase [Enterococcus faecalis D6] gi|256994112|gb|EEU81414.1| NAD-dependent DNA ligase [Enterococcus faecalis D6] gi|315025779|gb|EFT37711.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX2137] Length = 676 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 27/53 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G ++L + FG + +SR++ E + +++ I + IA + +F Sbjct: 516 GIRHVGAKAAKILAEHFGDLPTLSRATAEEIVALDSIGETIADSVVTYFENEE 568 >gi|228959356|ref|ZP_04121048.1| hypothetical protein bthur0005_28420 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228800305|gb|EEM47230.1| hypothetical protein bthur0005_28420 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 208 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 22/31 (70%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS 41 G+Y + D ++YVGKA++++ R+ ++ +S Sbjct: 22 GIYFIKDYNDNIIYVGKAFSIKSRVLAHFNS 52 >gi|254374741|ref|ZP_04990222.1| hypothetical protein FTDG_00916 [Francisella novicida GA99-3548] gi|151572460|gb|EDN38114.1| hypothetical protein FTDG_00916 [Francisella novicida GA99-3548] Length = 678 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I IG + +L FG+++ + E L I I + +A I + +H + Sbjct: 526 GIKDIGEVSSDVLANHFGSLESFRDAKFEELIEINDIGEIMANNIVSFWHDS 577 >gi|75763119|ref|ZP_00742895.1| UvrC-like protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489393|gb|EAO52833.1| UvrC-like protein [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 84 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 22/31 (70%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS 41 G+Y + D ++YVGKA++++ R+ ++ +S Sbjct: 22 GIYFIKDYNDNIIYVGKAFSIKSRVLAHFNS 52 >gi|297529218|ref|YP_003670493.1| DNA repair protein RadC [Geobacillus sp. C56-T3] gi|297252470|gb|ADI25916.1| DNA repair protein RadC [Geobacillus sp. C56-T3] Length = 226 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 20/39 (51%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + LL+ F ++ + ++ E + +I+GI A +I Sbjct: 50 QRLLRHFEGLRSLKDATVEEMTNIKGIGPTKAVQILAAL 88 >gi|332678645|gb|AEE87774.1| DNA ligase [Francisella cf. novicida Fx1] Length = 678 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I IG + +L FG+++ + E L I I + +A I + +H + Sbjct: 526 GIKDIGEVSSDVLANHFGSLESFRDAKFEELIEINDIGEIMANNIVSFWHDS 577 >gi|194307280|gb|ACF42137.1| DNA ligase [Mycobacterium lepromatosis] Length = 686 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG++ I +SPE LA++EG+ IA + F Sbjct: 525 SIRHVGPTAARALAAEFGSIDAILAASPEQLAAVEGVGAAIAAAVTEWF 573 >gi|149181655|ref|ZP_01860148.1| YqxK [Bacillus sp. SG-1] gi|148850633|gb|EDL64790.1| YqxK [Bacillus sp. SG-1] Length = 388 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISR-SSPETLASIEGISKKIACKIYNH 606 PL+ I G+GP LL FGT I E +A + I ++A I+ Sbjct: 318 PLEYIPGLGPKTLEKLLNHFGTEMDILHFVPREKIAEVTTI--QLAESIHKA 367 >gi|317123124|ref|YP_004103127.1| DNA integrity scanning, DisA, linker region [Thermaerobacter marianensis DSM 12885] gi|315593104|gb|ADU52400.1| DNA integrity scanning, DisA, linker region [Thermaerobacter marianensis DSM 12885] Length = 355 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 20/46 (43%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 L+Q FG++ I ++ E L +EGI A I + + Sbjct: 304 ENLVQHFGSLPRILAATVEQLDDVEGIGSVRARAIKDGLRRLQDQA 349 >gi|295111571|emb|CBL28321.1| DNA ligase, NAD-dependent [Synergistetes bacterium SGP1] Length = 683 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Query: 567 RKRLLL-QSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 R LL + FG++ +S +S +A +EG+ IA + F + Sbjct: 533 RVAELLAERFGSMDALSAASEAEIADVEGVGPVIASSVEAFFRDEAN 579 >gi|30021219|ref|NP_832850.1| UvrC-like protein [Bacillus cereus ATCC 14579] gi|229128444|ref|ZP_04257424.1| hypothetical protein bcere0015_28900 [Bacillus cereus BDRD-Cer4] gi|229145716|ref|ZP_04274097.1| hypothetical protein bcere0012_28670 [Bacillus cereus BDRD-ST24] gi|296503649|ref|YP_003665349.1| UvrC-like protein [Bacillus thuringiensis BMB171] gi|6759464|emb|CAB69792.1| hypothetical protein [Bacillus cereus ATCC 14579] gi|29896773|gb|AAP10051.1| UvrC-like protein [Bacillus cereus ATCC 14579] gi|228637697|gb|EEK94146.1| hypothetical protein bcere0012_28670 [Bacillus cereus BDRD-ST24] gi|228655027|gb|EEL10885.1| hypothetical protein bcere0015_28900 [Bacillus cereus BDRD-Cer4] gi|296324701|gb|ADH07629.1| UvrC-like protein [Bacillus thuringiensis BMB171] Length = 213 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 22/31 (70%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS 41 G+Y + D ++YVGKA++++ R+ ++ +S Sbjct: 22 GIYFIKDYNDNIIYVGKAFSIKSRVLAHFNS 52 >gi|281412257|ref|YP_003346336.1| protein of unknown function DUF147 [Thermotoga naphthophila RKU-10] gi|281373360|gb|ADA66922.1| protein of unknown function DUF147 [Thermotoga naphthophila RKU-10] Length = 357 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%) Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHF----HKNTSH 613 F T+ IS++S E L +EGI +K A I H+ TS Sbjct: 315 FKTLDQISKASVEDLKKVEGIGEKRARAISESISSLKHRKTSE 357 >gi|218184890|gb|EEC67317.1| hypothetical protein OsI_34337 [Oryza sativa Indica Group] Length = 430 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 21/35 (60%) Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 FG++ + +S E LA GI ++ ++++ FH+ Sbjct: 304 FGSLSQVMNASMEELARCPGIGERKVKRLHDTFHE 338 >gi|329897281|ref|ZP_08272019.1| DNA ligase [gamma proteobacterium IMCC3088] gi|328921277|gb|EGG28673.1| DNA ligase [gamma proteobacterium IMCC3088] Length = 674 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 3/67 (4%) Query: 548 RRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 R K+ ++ I +G L FG ++ + +S + L ++ + +A I Sbjct: 505 RSKRTTFARFLYALGIREVGVTTAERLADYFGDIESLIAASVDDLLAVPDVGPIVANHIR 564 Query: 605 NHFHKNT 611 + + +T Sbjct: 565 SFLNSST 571 >gi|258591348|emb|CBE67647.1| Transcription elongation protein nusA (N utilization substance protein A) (L factor) [NC10 bacterium 'Dutch sediment'] Length = 433 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%) Query: 556 PLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH 606 L E+ G+G L+++ G + + ++ +S E L +EGI K A K+ Sbjct: 371 RLAEVPGVGEKLADRLIEA-GVDSCRKLADASDEALVQVEGIGPKTAQKLIEA 422 >gi|229577664|ref|YP_001244320.2| DNA integrity scanning protein DisA [Thermotoga petrophila RKU-1] Length = 357 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%) Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHF----HKNTSH 613 F T+ IS++S E L +EGI +K A I H+ TS Sbjct: 315 FKTLDQISKASVEDLKKVEGIGEKRARAISESISSLKHRKTSE 357 >gi|226947391|ref|YP_002802482.1| helicase, RecD/TraA family [Clostridium botulinum A2 str. Kyoto] gi|226841096|gb|ACO83762.1| helicase, RecD/TraA family [Clostridium botulinum A2 str. Kyoto] Length = 744 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 4/55 (7%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN-HFHKNT 611 I+GIGP+ + +++ FG T+ I S+ E L IEGI KK IY+ + +N Sbjct: 88 ISGIGPVTAKKIVKKFGEETL-NILDSNIERLTEIEGIGKKKIEVIYDSYIKQNE 141 >gi|221235698|ref|YP_002518135.1| DNA repair protein RadC [Caulobacter crescentus NA1000] gi|220964871|gb|ACL96227.1| DNA repair protein radC [Caulobacter crescentus NA1000] Length = 221 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + LL FG++ + ++ E L +++G+ + A + H+ Sbjct: 81 KALLTRFGSLDGVLGATVEELRTVQGVGEAAAMDLKL-LHE 120 >gi|196032022|ref|ZP_03099436.1| conserved hypothetical protein [Bacillus cereus W] gi|228928181|ref|ZP_04091223.1| hypothetical protein bthur0010_28810 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228946734|ref|ZP_04109041.1| hypothetical protein bthur0007_28720 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|195994773|gb|EDX58727.1| conserved hypothetical protein [Bacillus cereus W] gi|228812951|gb|EEM59265.1| hypothetical protein bthur0007_28720 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228831473|gb|EEM77068.1| hypothetical protein bthur0010_28810 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 213 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 22/31 (70%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS 41 G+Y + D ++YVGKA++++ R+ ++ +S Sbjct: 22 GIYFIKDYNDNIIYVGKAFSIKSRVLAHFNS 52 >gi|158321546|ref|YP_001514053.1| RecD/TraA family helicase [Alkaliphilus oremlandii OhILAs] gi|158141745|gb|ABW20057.1| helicase, RecD/TraA family [Alkaliphilus oremlandii OhILAs] Length = 748 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%) Query: 560 INGIGPLRKRLLLQSFGT--VKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I GIG ++ FGT +++I + P+ L + GI + A I F + Sbjct: 96 IKGIGKKMAERIIDHFGTDALEIIQYA-PQRLTEVSGIGESKAETIAEAFEE 146 >gi|307704922|ref|ZP_07641813.1| comE operon protein 1 [Streptococcus mitis SK597] gi|307621536|gb|EFO00582.1| comE operon protein 1 [Streptococcus mitis SK597] Length = 215 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIY 604 KA+ L ++ G+G R + ++ F +V + L + GI K K+ Sbjct: 158 KASLEELKQVKGLGGKRAQDIIDHRETNGKFKSV--------DELKKVSGIGAKTIEKLK 209 Query: 605 NH 606 ++ Sbjct: 210 DY 211 >gi|307709136|ref|ZP_07645595.1| comE operon protein 1 [Streptococcus mitis SK564] gi|307620082|gb|EFN99199.1| comE operon protein 1 [Streptococcus mitis SK564] Length = 216 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIY 604 KA+ L ++ G+G R + ++ F +V + L + GI K K+ Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDHRETNGKFKSV--------DELKKVSGIGAKTIEKLK 210 Query: 605 NH 606 ++ Sbjct: 211 DY 212 >gi|303247047|ref|ZP_07333322.1| DNA ligase, NAD-dependent [Desulfovibrio fructosovorans JJ] gi|302491473|gb|EFL51358.1| DNA ligase, NAD-dependent [Desulfovibrio fructosovorans JJ] Length = 693 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 22/50 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G R L + F + ++ ++ E L ++ I ++A I F + Sbjct: 534 VGTRTARTLAEHFRDLDGLAAATSEDLTALPDIGPEVAGSIREFFDNAAN 583 >gi|168017901|ref|XP_001761485.1| predicted protein [Physcomitrella patens subsp. patens] gi|162687169|gb|EDQ73553.1| predicted protein [Physcomitrella patens subsp. patens] Length = 1163 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Query: 559 EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606 I +G + LL+ FG+++ + +S E L + GI A I++ Sbjct: 956 GIPSVG-VTAAKLLEQWFGSMERLLVASREELLLVPGIGTVSASAIHDW 1003 >gi|49481638|ref|YP_037220.1| UvrC-like protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49333194|gb|AAT63840.1| UvrC-like protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 213 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 22/31 (70%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS 41 G+Y + D ++YVGKA++++ R+ ++ +S Sbjct: 22 GIYFIKDYNDNIIYVGKAFSIKSRVLAHFNS 52 >gi|328956034|ref|YP_004373367.1| DNA ligase, NAD-dependent [Coriobacterium glomerans PW2] gi|328456358|gb|AEB07552.1| DNA ligase, NAD-dependent [Coriobacterium glomerans PW2] Length = 752 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 25/49 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G LL + FG+++ + ++ E +A I+GI KIA F Sbjct: 580 GIRHVGKSVGELLARHFGSIEALIEANEEEIAGIDGIGPKIASSTKMFF 628 >gi|254448715|ref|ZP_05062173.1| DNA ligase, NAD-dependent [gamma proteobacterium HTCC5015] gi|198261723|gb|EDY86010.1| DNA ligase, NAD-dependent [gamma proteobacterium HTCC5015] Length = 673 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 23/45 (51%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + R L FG ++ I ++S + L ++ + +A + + F Sbjct: 523 VGEVTARNLAMHFGDLEPIMQASEDDLLAVADVGPIVAAHVKSFF 567 >gi|146301217|ref|YP_001195808.1| DNA ligase, NAD-dependent [Flavobacterium johnsoniae UW101] gi|190359257|sp|A5FE87|DNLJ_FLAJO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|146155635|gb|ABQ06489.1| DNA ligase, NAD-dependent [Flavobacterium johnsoniae UW101] Length = 668 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 23/50 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + L + + + +S++S L ++ I ++IA + F + Sbjct: 515 VGETVAKKLAKHYKNIDALSQASLMDLILVDEIGERIARSVIEFFENEEN 564 >gi|228986193|ref|ZP_04146334.1| hypothetical protein bthur0001_28790 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228773511|gb|EEM21936.1| hypothetical protein bthur0001_28790 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 213 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 52/105 (49%), Gaps = 20/105 (19%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 + G+Y + D ++Y+GKA++++ R+ ++ +S ++ I + N + + + + Sbjct: 19 DDSGIYFIKDYNDNIIYIGKAFSIKSRVLAHFNSYSN---IKEYVHLFNKVAYLIEDS-- 73 Query: 68 EALLLEANMIK-----RLKPRFNILLRDDKSFP-----YILITDK 102 LL+ ++++ + KP N + K FP YI T+K Sbjct: 74 ---LLKRSLLQVTYMIKYKPVLNKEV--QKEFPELYTQYIKQTNK 113 >gi|229030797|ref|ZP_04186821.1| hypothetical protein bcere0028_28620 [Bacillus cereus AH1271] gi|228730518|gb|EEL81474.1| hypothetical protein bcere0028_28620 [Bacillus cereus AH1271] Length = 213 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 52/105 (49%), Gaps = 20/105 (19%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 + G+Y + D ++Y+GKA++++ R+ ++ +S ++ I + N + + + + Sbjct: 19 DDSGIYFIKDYNDNIIYIGKAFSIKSRVLAHFNSYSN---IKEYVHLFNKVAYLIEDS-- 73 Query: 68 EALLLEANMIK-----RLKPRFNILLRDDKSFP-----YILITDK 102 LL+ ++++ + KP N + K FP YI T+K Sbjct: 74 ---LLKRSLLQVTYMIKYKPVLNKEV--QKEFPELYTQYIKQTNK 113 >gi|78044921|ref|YP_359263.1| competence protein [Carboxydothermus hydrogenoformans Z-2901] gi|77997036|gb|ABB15935.1| competence protein [Carboxydothermus hydrogenoformans Z-2901] Length = 204 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 14/58 (24%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 LDE+ G+GP +++ F ++ E L ++GI K + ++ Sbjct: 152 ELDELPGVGPATAAKIIEYREQNGPF--------ATIEDLKKVKGIGDKKFETLKDYI 201 >gi|148244045|ref|YP_001220283.1| RecD/TraA family helicase [Acidiphilium cryptum JF-5] gi|325113165|ref|YP_004277111.1| putative exodeoxyribonuclease V alpha subunit [Acidiphilium multivorum AIU301] gi|146400608|gb|ABQ29141.1| ATP-dependent DNA helicase, RecD/TraA family [Acidiphilium cryptum JF-5] gi|325052632|dbj|BAJ82969.1| putative exodeoxyribonuclease V alpha subunit [Acidiphilium multivorum AIU301] Length = 731 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 560 INGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKIYNH 606 I GIGP+ + L+++FG TV + + PE L + GI A +I N Sbjct: 105 IRGIGPVYAKKLIRAFGETVFDVIEAKPERLREVPGIGAVRAGRIVNA 152 >gi|148243790|ref|YP_001220030.1| RecD/TraA family helicase [Acidiphilium cryptum JF-5] gi|146400353|gb|ABQ28888.1| helicase, RecD/TraA family [Acidiphilium cryptum JF-5] Length = 731 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 560 INGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKIYNH 606 I GIGP+ + L+++FG TV + + PE L + GI A +I N Sbjct: 105 IRGIGPVYAKKLIRAFGDTVFDVIEAKPERLREVPGIGAVRAGRIVNA 152 >gi|118497929|ref|YP_898979.1| DNA ligase [Francisella tularensis subsp. novicida U112] gi|194323151|ref|ZP_03056935.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. novicida FTE] gi|166215758|sp|A0Q7L0|DNLJ_FRATN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|118423835|gb|ABK90225.1| DNA ligase [Francisella novicida U112] gi|194322515|gb|EDX19995.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. novicida FTE] Length = 678 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I IG + +L FG+++ + E L I I + +A I + +H + Sbjct: 526 GIKDIGEVSSDVLANHFGSLESFRDAKFEELIEINDIGEIMANNIVSFWHDS 577 >gi|126458706|ref|YP_001054984.1| DEAD/DEAH box helicase domain-containing protein [Pyrobaculum calidifontis JCM 11548] gi|226740608|sp|A3MSA1|HELS_PYRCJ RecName: Full=Putative ski2-type helicase gi|126248427|gb|ABO07518.1| DEAD/DEAH box helicase domain protein [Pyrobaculum calidifontis JCM 11548] Length = 708 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 3/46 (6%) Query: 562 GIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN 605 G+G +R R L FG T++ I+R++ +AS+ G +K+A + Sbjct: 650 GVGRVRARTLYN-FGYRTLEDIARATVREIASLPGFGEKLAESVIE 694 >gi|147918727|ref|YP_687550.1| putative DNA mismatch repair protein, N-terminal fragment [uncultured methanogenic archaeon RC-I] gi|110622946|emb|CAJ38224.1| putative DNA mismatch repair protein, N-terminal fragment [uncultured methanogenic archaeon RC-I] Length = 565 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%) Query: 555 SPLDEINGIGPLRKRLLLQSFGT----VKMISRSSPETLASIEGISKKIACKI 603 S L GIG L++ FG+ +++++R +LA + GIS+K A I Sbjct: 4 SELTGYPGIGEKIAAKLVEHFGSEEQALEILNRRDVASLAEVPGISEKYAVSI 56 >gi|284989239|ref|YP_003407793.1| DNA integrity scanning, DisA, linker region [Geodermatophilus obscurus DSM 43160] gi|284062484|gb|ADB73422.1| DNA integrity scanning, DisA, linker region [Geodermatophilus obscurus DSM 43160] Length = 361 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 19/38 (50%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L+ FG ++ + ++ E L ++EG+ + A I Sbjct: 311 RLVDHFGGLQKLLAATIEDLLAVEGVGEARARGIREGL 348 >gi|218230779|ref|YP_002367837.1| hypothetical protein BCB4264_A3130 [Bacillus cereus B4264] gi|229110562|ref|ZP_04240130.1| hypothetical protein bcere0018_28140 [Bacillus cereus Rock1-15] gi|218158736|gb|ACK58728.1| conserved hypothetical protein [Bacillus cereus B4264] gi|228672887|gb|EEL28163.1| hypothetical protein bcere0018_28140 [Bacillus cereus Rock1-15] Length = 208 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 22/31 (70%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS 41 G+Y + D ++YVGKA++++ R+ ++ +S Sbjct: 22 GIYFIKDYNDNIIYVGKAFSIKSRVLAHFNS 52 >gi|108804996|ref|YP_644933.1| DNA integrity scanning protein DisA [Rubrobacter xylanophilus DSM 9941] gi|108766239|gb|ABG05121.1| protein of unknown function DUF147 [Rubrobacter xylanophilus DSM 9941] Length = 361 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 20/42 (47%) Query: 566 LRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ FG+++ + +S L +EG+ + A I+ Sbjct: 307 KVAENLIREFGSLEGLLEASEAELDEVEGVGQARARAIHRGL 348 >gi|301054628|ref|YP_003792839.1| UvrC-like protein [Bacillus anthracis CI] gi|300376797|gb|ADK05701.1| UvrC-like protein [Bacillus cereus biovar anthracis str. CI] Length = 213 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 52/105 (49%), Gaps = 20/105 (19%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 + G+Y + D ++Y+GKA++++ R+ ++ +S ++ I + N + + + + Sbjct: 19 DDSGIYFIKDYNDNIIYIGKAFSIKSRVLAHFNSYSN---IKEYVHLFNKVAYLIEDS-- 73 Query: 68 EALLLEANMIK-----RLKPRFNILLRDDKSFP-----YILITDK 102 LL+ ++++ + KP N + K FP YI T+K Sbjct: 74 ---LLKRSLLQVTYTIKYKPVLNKEV--QKEFPELYTQYIKQTNK 113 >gi|297544111|ref|YP_003676413.1| NAD-dependent DNA ligase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841886|gb|ADH60402.1| DNA ligase, NAD-dependent [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 662 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 23/50 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 IG +++ + F T+ I ++ E + + K+A I + F + + Sbjct: 511 IGSKAAQVIAEHFKTIDDIMKAKFEDFTKLPDVGPKMARSIVSFFAEKQN 560 >gi|256397462|ref|YP_003119026.1| DNA integrity scanning protein DisA [Catenulispora acidiphila DSM 44928] gi|256363688|gb|ACU77185.1| protein of unknown function DUF147 [Catenulispora acidiphila DSM 44928] Length = 362 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 19/38 (50%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ FG ++ + +S + L +EG+ + A + Sbjct: 312 RLVEHFGGLQKLLAASIDDLQRVEGVGETRARSVREGL 349 >gi|121535700|ref|ZP_01667504.1| protein of unknown function DUF147 [Thermosinus carboxydivorans Nor1] gi|121305731|gb|EAX46669.1| protein of unknown function DUF147 [Thermosinus carboxydivorans Nor1] Length = 359 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 18/41 (43%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L+ F T+ I ++ L +EGI + A I + + Sbjct: 308 ENLVAHFKTLHRIYNATIAELDEVEGIGEVRAKTIKDGLKR 348 >gi|156739319|ref|NP_001096608.1| DNA excision repair protein ERCC-1 [Danio rerio] gi|187608525|ref|NP_001120181.1| hypothetical protein LOC100145222 [Xenopus (Silurana) tropicalis] gi|44890524|gb|AAH66697.1| Excision repair cross-complementing rodent repair deficiency, complementation group 1 [Danio rerio] gi|156230040|gb|AAI52195.1| Excision repair cross-complementing rodent repair deficiency, complementation group 1 [Danio rerio] gi|159570274|emb|CAP19619.1| novel protein similar to vertebrate excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence) (ERCC1, zgc:77511) [Danio rerio] gi|166796426|gb|AAI59290.1| LOC100145222 protein [Xenopus (Silurana) tropicalis] Length = 342 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 23/39 (58%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 LL +F +++ I ++S E L G+ + A ++Y+ H+ Sbjct: 294 LLSTFSSLEGIIKASKEELVLCPGLGPQKARRLYDVLHQ 332 >gi|10122039|gb|AAG13428.1|AC051634_9 putative nucleotide repair protein [Oryza sativa Japonica Group] Length = 395 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 21/35 (60%) Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 FG++ + +S E LA GI ++ ++++ FH+ Sbjct: 261 FGSLSQVMNASMEELARCPGIGERKVKRLHDTFHE 295 >gi|300770008|ref|ZP_07079887.1| SMF family DNA processing protein [Sphingobacterium spiritivorum ATCC 33861] gi|300762484|gb|EFK59301.1| SMF family DNA processing protein [Sphingobacterium spiritivorum ATCC 33861] Length = 370 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 26/48 (54%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 L ++ GIGP R LL TV+ I +S + L +I GI+ I ++ Sbjct: 8 ALTKVKGIGPRLSRSLLSHCDTVEAIFTASKKQLLTIPGINIAIIERL 55 >gi|145298235|ref|YP_001141076.1| NAD-dependent DNA ligase [Aeromonas salmonicida subsp. salmonicida A449] gi|166215387|sp|A4SKA6|DNLJ_AERS4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|142851007|gb|ABO89328.1| NAD-dependent DNA ligase [Aeromonas salmonicida subsp. salmonicida A449] Length = 664 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 18/47 (38%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L F T+ + +S E L + + +A +Y + Sbjct: 519 VGEATALNLANHFLTLDALRAASVEQLLEVADVGDIVAKHVYYFLRQ 565 >gi|117618613|ref|YP_855770.1| DNA ligase, NAD-dependent [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166215386|sp|A0KHL9|DNLJ_AERHH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|117560020|gb|ABK36968.1| DNA ligase, NAD-dependent [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 668 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 18/47 (38%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L F T+ + +S E L + + +A +Y + Sbjct: 519 VGEATALNLANHFLTLDALRAASVEQLLEVADVGDIVAKHVYYFLRQ 565 >gi|228940146|ref|ZP_04102718.1| hypothetical protein bthur0008_27960 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973139|ref|ZP_04133730.1| hypothetical protein bthur0003_29010 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979674|ref|ZP_04139999.1| hypothetical protein bthur0002_28490 [Bacillus thuringiensis Bt407] gi|228780069|gb|EEM28311.1| hypothetical protein bthur0002_28490 [Bacillus thuringiensis Bt407] gi|228786597|gb|EEM34585.1| hypothetical protein bthur0003_29010 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819523|gb|EEM65576.1| hypothetical protein bthur0008_27960 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326940215|gb|AEA16111.1| UvrC-like protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 213 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 22/31 (70%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS 41 G+Y + D ++YVGKA++++ R+ ++ +S Sbjct: 22 GIYFIKDYNDNIIYVGKAFSIKSRVLAHFNS 52 >gi|170290825|ref|YP_001737641.1| DNA repair and recombination protein RadA [Candidatus Korarchaeum cryptofilum OPF8] gi|170174905|gb|ACB07958.1| DNA repair and recombination protein RadA [Candidatus Korarchaeum cryptofilum OPF8] Length = 336 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606 L E+ G+GP + L ++ F +++ I+ S+P LA GIS+ +A KI Sbjct: 29 LTELEGVGPATAKRLAEAGFTSLESIAMSTPSELAVYAGISEAVAQKIIQA 79 >gi|226729444|sp|A5IKM1|DISA_THEP1 RecName: Full=DNA integrity scanning protein disA gi|147735404|gb|ABQ46744.1| protein of unknown function DUF147 [Thermotoga petrophila RKU-1] Length = 352 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%) Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHF----HKNTSH 613 F T+ IS++S E L +EGI +K A I H+ TS Sbjct: 310 FKTLDQISKASVEDLKKVEGIGEKRARAISESISSLKHRKTSE 352 >gi|115314545|ref|YP_763268.1| DNA ligase [Francisella tularensis subsp. holarctica OSU18] gi|122325430|sp|Q0BMQ3|DNLJ_FRATO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|115129444|gb|ABI82631.1| DNA ligase (NAD(+)) [Francisella tularensis subsp. holarctica OSU18] Length = 678 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I IG + L FG+++ + E L I + + IA I + +H + Sbjct: 526 GIKDIGEVSSDALANHFGSLESFRDAKFEELIEINYVGEIIANNIVSFWHDS 577 >gi|260824255|ref|XP_002607083.1| hypothetical protein BRAFLDRAFT_118676 [Branchiostoma floridae] gi|229292429|gb|EEN63093.1| hypothetical protein BRAFLDRAFT_118676 [Branchiostoma floridae] Length = 427 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 23/39 (58%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L+ +F +++ I ++S E LA G + A ++Y+ H+ Sbjct: 375 LVTTFRSIEGIIKASKEDLALCPGFGPQKAKRVYDALHQ 413 >gi|223940790|ref|ZP_03632624.1| DNA repair protein RadC [bacterium Ellin514] gi|223890547|gb|EEF57074.1| DNA repair protein RadC [bacterium Ellin514] Length = 244 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Query: 559 EINGIGPLR-KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + G+ + LL FGT+ +SR++ L ++GI + A + + F Sbjct: 50 GLKGVSAITVAEQLLHRFGTLDTLSRATLADLCKVKGIGRDKAIALKSAF 99 >gi|315652468|ref|ZP_07905453.1| DNA ligase [Eubacterium saburreum DSM 3986] gi|315485257|gb|EFU75654.1| DNA ligase [Eubacterium saburreum DSM 3986] Length = 649 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 37/119 (31%), Gaps = 29/119 (24%) Query: 510 FFVKKGEALVLNM------RDPIL------YFIQRLRDEAHRFAITTHRKRRKKAAYSPL 557 F + L+ I L DEA K S Sbjct: 445 FIKSDSDLFRLDKFKDEIINMEGFGKRSYEKLIAAL-DEA------------KNTTVSRF 491 Query: 558 D---EINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I GIG +++ + F + I +S + L IEGI + +A I + F + Sbjct: 492 LYSLGIAGIGSANAKMIAKYFDNDIDRIISASKDDLRDIEGIGEVLAGSIEDFFKSEKN 550 >gi|319793880|ref|YP_004155520.1| DNA ligase, NAD-dependent [Variovorax paradoxus EPS] gi|315596343|gb|ADU37409.1| DNA ligase, NAD-dependent [Variovorax paradoxus EPS] Length = 694 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 20/49 (40%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G + L + FG + I ++ + L + + +A + F Sbjct: 537 GIRHVGESTAKDLAKHFGKLDAIMDATEQQLLEVNDVGPVVAQSLRTFF 585 >gi|304391571|ref|ZP_07373513.1| putative DNA repair protein RadC-like protein [Ahrensia sp. R2A130] gi|303295800|gb|EFL90158.1| putative DNA repair protein RadC-like protein [Ahrensia sp. R2A130] Length = 259 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 9/35 (25%), Positives = 20/35 (57%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 + LL+ FG+V+ + +S L +E + ++A + Sbjct: 83 KRLLKKFGSVRGVLGASSAELQKVEKVGPRMAENL 117 >gi|295697533|ref|YP_003590771.1| helicase, RecD/TraA family [Bacillus tusciae DSM 2912] gi|295413135|gb|ADG07627.1| helicase, RecD/TraA family [Bacillus tusciae DSM 2912] Length = 761 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 5/54 (9%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPET---LASIEGISKKIACKIYNHFHKN 610 I G+GP L+ FG + I R + L +EGI + A +I + ++ Sbjct: 87 IRGVGPKTAERLVDHFG--QDILRVIEDEPGRLREVEGIGARKAEQIAEGYREH 138 >gi|229185340|ref|ZP_04312523.1| hypothetical protein bcere0004_28940 [Bacillus cereus BGSC 6E1] gi|228598073|gb|EEK55710.1| hypothetical protein bcere0004_28940 [Bacillus cereus BGSC 6E1] Length = 213 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 52/105 (49%), Gaps = 20/105 (19%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 + G+Y + D ++Y+GKA++++ R+ ++ +S ++ I + N + + + + Sbjct: 19 DDSGIYFIKDYNDNIIYIGKAFSIKSRVLAHFNSYSN---IKEYVHLFNKVAYLIEDS-- 73 Query: 68 EALLLEANMIK-----RLKPRFNILLRDDKSFP-----YILITDK 102 LL+ ++++ + KP N + K FP YI T+K Sbjct: 74 ---LLKRSLLQVTYMIKYKPVLNKEV--QKEFPELYTQYIKQTNK 113 >gi|144704831|gb|ABP02067.1| DNA polymerase [Bacillus caldolyticus] Length = 878 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + GIG LL+ FGTV+ + +S + + +K+ + H Sbjct: 194 GVPGIGEKTAVKLLKQFGTVENVL-ASIDEIK-----GEKLKETLRQH 235 >gi|38146965|gb|AAR11867.1| DNA polymerase I [Bacillus caldolyticus] Length = 878 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + GIG LL+ FGTV+ + +S + + +K+ + H Sbjct: 194 GVPGIGEKTAVKLLKQFGTVENVL-ASIDEIK-----GEKLKETLRQH 235 >gi|220907422|ref|YP_002482733.1| competence protein ComEA helix-hairpin-helix repeat-containing protein [Cyanothece sp. PCC 7425] gi|219864033|gb|ACL44372.1| competence protein ComEA helix-hairpin-helix repeat protein [Cyanothece sp. PCC 7425] Length = 585 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 3/54 (5%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + LD + GIGP + ++ + + K +S + L ++ GI + KI + Sbjct: 531 ATEAELDALPGIGPKTAKAMIAA-RSEKPF--ASLDDLDAVPGIGPSVLEKIQD 581 >gi|148265710|ref|YP_001232416.1| DNA protecting protein DprA [Geobacter uraniireducens Rf4] gi|146399210|gb|ABQ27843.1| DNA protecting protein DprA [Geobacter uraniireducens Rf4] Length = 359 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 4/63 (6%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH----FHKNT 611 L I +G + R LL+ F T + ++S L++++G+S A I H F + Sbjct: 8 ALKSIPLVGNVTFRRLLERFDTPERALKASASELSTVKGVSAAAAASILTHDYRPFAERE 67 Query: 612 SHT 614 S Sbjct: 68 SEA 70 >gi|134097048|ref|YP_001102709.1| DNA integrity scanning protein DisA [Saccharopolyspora erythraea NRRL 2338] gi|291007011|ref|ZP_06564984.1| DNA integrity scanning protein DisA [Saccharopolyspora erythraea NRRL 2338] gi|133909671|emb|CAL99783.1| protein of unknown function DUF147 [Saccharopolyspora erythraea NRRL 2338] Length = 370 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 23/40 (57%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 ++ L++ FG+++ + ++ E L+ +E + + A ++ Sbjct: 318 RKQLVEHFGSLQNLLAATAEDLSVVESVGESRARQVREGL 357 >gi|327475235|gb|AEA77212.1| DNA ligase [Exiguobacterium sp. EPVM] Length = 664 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 27/50 (54%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L+ + F T++ + +S + L SI+GI K+A I +F K + Sbjct: 511 VGQKAAVLIAERFETMEAVMEASIDELTSIDGIGTKMAESISLYFEKPEA 560 >gi|322831833|ref|YP_004211860.1| DNA ligase, NAD-dependent [Rahnella sp. Y9602] gi|321167034|gb|ADW72733.1| DNA ligase, NAD-dependent [Rahnella sp. Y9602] Length = 673 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 8/52 (15%), Positives = 22/52 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L +G+V+ + + E+L ++ + +A + N + + Sbjct: 520 VGEATAANLAAHYGSVEALKAADIESLKGVQDVGDVVAKHVVNFLSEEHNQQ 571 >gi|156230822|gb|AAI51884.1| Excision repair cross-complementing rodent repair deficiency, complementation group 1 [Danio rerio] Length = 342 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 23/39 (58%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 LL +F +++ I ++S E L G+ + A ++Y+ H+ Sbjct: 294 LLSTFSSLEGIIKASKEELVLCPGLGPQKARRLYDVLHQ 332 >gi|115482968|ref|NP_001065077.1| Os10g0518900 [Oryza sativa Japonica Group] gi|78708916|gb|ABB47891.1| DNA excision repair protein ERCC-1, putative, expressed [Oryza sativa Japonica Group] gi|113639686|dbj|BAF26991.1| Os10g0518900 [Oryza sativa Japonica Group] gi|215697952|dbj|BAG92132.1| unnamed protein product [Oryza sativa Japonica Group] Length = 387 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 21/35 (60%) Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 FG++ + +S E LA GI ++ ++++ FH+ Sbjct: 261 FGSLSQVMNASMEELARCPGIGERKVKRLHDTFHE 295 >gi|324327082|gb|ADY22342.1| UvrC-like protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 213 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 52/105 (49%), Gaps = 20/105 (19%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 + G+Y + D ++Y+GKA++++ R+ ++ +S ++ I + N + + + + Sbjct: 19 DDSGIYFIKDYNDNIIYIGKAFSIKSRVLAHFNSYSN---IKEYVHLFNKVAYLIEDS-- 73 Query: 68 EALLLEANMIK-----RLKPRFNILLRDDKSFP-----YILITDK 102 LL+ ++++ + KP N + K FP YI T+K Sbjct: 74 ---LLKRSLLQVTYMIKYKPVLNKEV--QKEFPELYTQYIKQTNK 113 >gi|257865964|ref|ZP_05645617.1| DNA ligase [Enterococcus casseliflavus EC30] gi|257872297|ref|ZP_05651950.1| DNA ligase [Enterococcus casseliflavus EC10] gi|257799898|gb|EEV28950.1| DNA ligase [Enterococcus casseliflavus EC30] gi|257806461|gb|EEV35283.1| DNA ligase [Enterococcus casseliflavus EC10] Length = 676 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R+L + FG ++ +S++ E + S+E I IA + +F Sbjct: 513 GIRHVGAKAARILAEHFGDLRALSKAKEEEIISLEAIGATIAESVVTYFDNQE 565 >gi|65320392|ref|ZP_00393351.1| COG0322: Nuclease subunit of the excinuclease complex [Bacillus anthracis str. A2012] Length = 207 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 52/105 (49%), Gaps = 20/105 (19%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 + G+Y + D ++Y+GKA++++ R+ ++ +S ++ I + N + + + + Sbjct: 13 DDSGIYFIKDYNDNIIYIGKAFSIKSRVLAHFNSYSN---IKEYVHLFNKVAYLIEDS-- 67 Query: 68 EALLLEANMIK-----RLKPRFNILLRDDKSFP-----YILITDK 102 LL+ ++++ + KP N + K FP YI T+K Sbjct: 68 ---LLKRSLLQVTYMIKYKPVLNKEV--QKEFPELYTQYIKQTNK 107 >gi|251799680|ref|YP_003014411.1| NAD-dependent DNA ligase LigA [Paenibacillus sp. JDR-2] gi|247547306|gb|ACT04325.1| DNA ligase, NAD-dependent [Paenibacillus sp. JDR-2] Length = 677 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 23/49 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I G ++L +G++ + ++ E L ++ + +A I N+F Sbjct: 521 GIPNTGKATTKMLADHYGSLDGVMSATAEELVGLQDVGAIVADSIVNYF 569 >gi|118478441|ref|YP_895592.1| UvrC-like protein [Bacillus thuringiensis str. Al Hakam] gi|196042720|ref|ZP_03109959.1| conserved hypothetical protein [Bacillus cereus 03BB108] gi|118417666|gb|ABK86085.1| UvrC-like protein [Bacillus thuringiensis str. Al Hakam] gi|196026204|gb|EDX64872.1| conserved hypothetical protein [Bacillus cereus 03BB108] Length = 213 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 52/105 (49%), Gaps = 20/105 (19%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 + G+Y + D ++Y+GKA++++ R+ ++ +S ++ I + N + + + + Sbjct: 19 DDSGIYFIKDYNDNIIYIGKAFSIKSRVLAHFNSYSN---IKEYVHLFNKVAYLIEDS-- 73 Query: 68 EALLLEANMIK-----RLKPRFNILLRDDKSFP-----YILITDK 102 LL+ ++++ + KP N + K FP YI T+K Sbjct: 74 ---LLKRSLLQVTYMIKYKPVLNKEV--QKEFPELYTQYIKQTNK 113 >gi|30263084|ref|NP_845461.1| hypothetical protein BA_3140 [Bacillus anthracis str. Ames] gi|47528430|ref|YP_019779.1| hypothetical protein GBAA_3140 [Bacillus anthracis str. 'Ames Ancestor'] gi|49185924|ref|YP_029176.1| hypothetical protein BAS2918 [Bacillus anthracis str. Sterne] gi|165869080|ref|ZP_02213740.1| conserved hypothetical protein [Bacillus anthracis str. A0488] gi|167631863|ref|ZP_02390190.1| conserved hypothetical protein [Bacillus anthracis str. A0442] gi|167637335|ref|ZP_02395615.1| conserved hypothetical protein [Bacillus anthracis str. A0193] gi|170685061|ref|ZP_02876286.1| conserved hypothetical protein [Bacillus anthracis str. A0465] gi|170705305|ref|ZP_02895770.1| conserved hypothetical protein [Bacillus anthracis str. A0389] gi|177650283|ref|ZP_02933284.1| conserved hypothetical protein [Bacillus anthracis str. A0174] gi|190565009|ref|ZP_03017930.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I] gi|227814065|ref|YP_002814074.1| hypothetical protein BAMEG_1472 [Bacillus anthracis str. CDC 684] gi|229602867|ref|YP_002867354.1| hypothetical protein BAA_3187 [Bacillus anthracis str. A0248] gi|254685676|ref|ZP_05149535.1| hypothetical protein BantC_17720 [Bacillus anthracis str. CNEVA-9066] gi|254723087|ref|ZP_05184875.1| hypothetical protein BantA1_11509 [Bacillus anthracis str. A1055] gi|254738143|ref|ZP_05195846.1| hypothetical protein BantWNA_23539 [Bacillus anthracis str. Western North America USA6153] gi|254742687|ref|ZP_05200372.1| hypothetical protein BantKB_17022 [Bacillus anthracis str. Kruger B] gi|254752457|ref|ZP_05204493.1| hypothetical protein BantV_08316 [Bacillus anthracis str. Vollum] gi|254760975|ref|ZP_05212999.1| hypothetical protein BantA9_21906 [Bacillus anthracis str. Australia 94] gi|30257717|gb|AAP26947.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gi|47503578|gb|AAT32254.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49179851|gb|AAT55227.1| conserved hypothetical protein [Bacillus anthracis str. Sterne] gi|164715806|gb|EDR21323.1| conserved hypothetical protein [Bacillus anthracis str. A0488] gi|167514842|gb|EDR90208.1| conserved hypothetical protein [Bacillus anthracis str. A0193] gi|167532161|gb|EDR94797.1| conserved hypothetical protein [Bacillus anthracis str. A0442] gi|170130160|gb|EDS99022.1| conserved hypothetical protein [Bacillus anthracis str. A0389] gi|170671321|gb|EDT22059.1| conserved hypothetical protein [Bacillus anthracis str. A0465] gi|172084235|gb|EDT69294.1| conserved hypothetical protein [Bacillus anthracis str. A0174] gi|190564326|gb|EDV18290.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I] gi|227005053|gb|ACP14796.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684] gi|229267275|gb|ACQ48912.1| conserved hypothetical protein [Bacillus anthracis str. A0248] Length = 213 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 52/105 (49%), Gaps = 20/105 (19%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 + G+Y + D ++Y+GKA++++ R+ ++ +S ++ I + N + + + + Sbjct: 19 DDSGIYFIKDYNDNIIYIGKAFSIKSRVLAHFNSYSN---IKEYVHLFNKVAYLIEDS-- 73 Query: 68 EALLLEANMIK-----RLKPRFNILLRDDKSFP-----YILITDK 102 LL+ ++++ + KP N + K FP YI T+K Sbjct: 74 ---LLKRSLLQVTYMIKYKPVLNKEV--QKEFPELYTQYIKQTNK 113 >gi|315613211|ref|ZP_07888121.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis ATCC 49296] gi|315314773|gb|EFU62815.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis ATCC 49296] Length = 652 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 29/49 (59%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G +LLLQ F +++ ++++ PE +ASIE + IA + +F Sbjct: 502 GIRHVGSKASQLLLQHFHSIENLAQADPEEVASIESLGSVIAQSLQTYF 550 >gi|306825169|ref|ZP_07458511.1| NAD-dependent DNA ligase LigA [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432605|gb|EFM35579.1| NAD-dependent DNA ligase LigA [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 652 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 29/49 (59%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G +LLLQ F +++ ++++ PE +ASIE + IA + +F Sbjct: 502 GIRHVGSKASQLLLQHFHSIENLAQADPEEVASIESLGSVIAQSLQTYF 550 >gi|293365500|ref|ZP_06612209.1| NAD-dependent DNA ligase LigA [Streptococcus oralis ATCC 35037] gi|307703456|ref|ZP_07640398.1| DNA ligase, NAD-dependent [Streptococcus oralis ATCC 35037] gi|291315868|gb|EFE56312.1| NAD-dependent DNA ligase LigA [Streptococcus oralis ATCC 35037] gi|307622863|gb|EFO01858.1| DNA ligase, NAD-dependent [Streptococcus oralis ATCC 35037] Length = 652 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 29/49 (59%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G +LLLQ F +++ ++++ PE +ASIE + IA + +F Sbjct: 502 GIRHVGSKASQLLLQHFHSIENLAQADPEEVASIESLGSVIAQSLQTYF 550 >gi|257875591|ref|ZP_05655244.1| DNA ligase [Enterococcus casseliflavus EC20] gi|257809757|gb|EEV38577.1| DNA ligase [Enterococcus casseliflavus EC20] Length = 676 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R+L + FG ++ +S++ E + S+E I IA + +F Sbjct: 513 GIRHVGAKAARILAEHFGDLRALSKAKEEEIISLEAIGATIAESVVTYFDNQE 565 >gi|196233436|ref|ZP_03132280.1| DNA protecting protein DprA [Chthoniobacter flavus Ellin428] gi|196222576|gb|EDY17102.1| DNA protecting protein DprA [Chthoniobacter flavus Ellin428] Length = 362 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 L+ + G+GP+R R LL+ F T + + + L +++GI ++A I Sbjct: 9 ALNMVPGVGPVRLRRLLEVFETPEQVLLAREGQLRAVDGIGAEVAAGI 56 >gi|218904267|ref|YP_002452101.1| hypothetical protein BCAH820_3151 [Bacillus cereus AH820] gi|228934379|ref|ZP_04097217.1| hypothetical protein bthur0009_28380 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229125018|ref|ZP_04254186.1| hypothetical protein bcere0016_52910 [Bacillus cereus 95/8201] gi|218534802|gb|ACK87200.1| conserved hypothetical protein [Bacillus cereus AH820] gi|228658434|gb|EEL14106.1| hypothetical protein bcere0016_52910 [Bacillus cereus 95/8201] gi|228825281|gb|EEM71076.1| hypothetical protein bthur0009_28380 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 213 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 23/34 (67%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS 41 + G+Y + D ++Y+GKA++++ R+ ++ +S Sbjct: 19 DDSGIYFIKDYNDNIIYIGKAFSIKSRVLAHFNS 52 >gi|52142393|ref|YP_084435.1| UvrC-like protein [Bacillus cereus E33L] gi|51975862|gb|AAU17412.1| UvrC-like protein [Bacillus cereus E33L] Length = 213 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 52/105 (49%), Gaps = 20/105 (19%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 + G+Y + D ++Y+GKA++++ R+ ++ +S ++ I + N + + + + Sbjct: 19 DDSGIYFIKDYNDNIIYIGKAFSIKSRVLAHFNSYSN---IKEYVHLFNKVAYLIEDS-- 73 Query: 68 EALLLEANMIK-----RLKPRFNILLRDDKSFP-----YILITDK 102 LL+ ++++ + KP N + K FP YI T+K Sbjct: 74 ---LLKRSLLQVTYMIKYKPVLNKEV--QKEFPELYTQYIKQTNK 113 >gi|289524079|ref|ZP_06440933.1| DNA repair protein RadC [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502735|gb|EFD23899.1| DNA repair protein RadC [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 309 Score = 48.6 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 19/39 (48%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 R LL FG+++ I + ++ I+GI A +I Sbjct: 125 RTLLNRFGSLRGIDSAPISEISKIDGIGLAKAVQIKAAL 163 >gi|313665597|ref|YP_004047468.1| DNA ligase (NAD(+)) [Mycoplasma leachii PG50] gi|312949194|gb|ADR23790.1| DNA ligase (NAD(+)) [Mycoplasma leachii PG50] Length = 668 Score = 48.6 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 23/54 (42%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I IG ++L + + + + +S + L I I + +A I + F + Sbjct: 513 GIRHIGSKTAKILAKKYQNIDNLMSASYDELIQINSIGESLALSIVDWFKIEDN 566 >gi|260550982|ref|ZP_05825187.1| DNA ligase [Acinetobacter sp. RUH2624] gi|260405930|gb|EEW99417.1| DNA ligase [Acinetobacter sp. RUH2624] Length = 691 Score = 48.6 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 22/49 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I G+G R+L +F T++ + ++ E L + A I + F Sbjct: 534 GIRGVGETTARMLANTFQTLEALKAANVEVLKKTPDVGDITAEWIADFF 582 >gi|90577974|ref|ZP_01233785.1| hypothetical protein VAS14_13024 [Vibrio angustum S14] gi|90441060|gb|EAS66240.1| hypothetical protein VAS14_13024 [Vibrio angustum S14] Length = 158 Score = 48.6 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 7/82 (8%) Query: 11 GVYQMLDIAGRVLYVGKAY-NLQKRIKSYM--HSNNHTHRITHMIS--QINNIRFTVTCT 65 GVY + + ++ VG + NL R+ +Y N H+ I + +R + Sbjct: 36 GVYILFNDQQDIIRVGSSTSNLYSRLNTYFDYKDNTHSVGIGWWVEGVSARYVRTITVPS 95 Query: 66 E--VEALLLEANMIKRLKPRFN 85 E EAL +E ++ +L P N Sbjct: 96 EQSFEALSIEKFLLDKLTPPLN 117 >gi|317489959|ref|ZP_07948451.1| DNA ligase [Eggerthella sp. 1_3_56FAA] gi|316910957|gb|EFV32574.1| DNA ligase [Eggerthella sp. 1_3_56FAA] Length = 708 Score = 48.6 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 19/100 (19%) Query: 513 KKGEALVLNMRDPILYFIQRLRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKR 569 K GE + L + + DE+ R FA +A + I +G Sbjct: 511 KDGEPIRLGST-VAKKLVAAI-DES-RTRPFA---------RALFG--LGIRHVG-KTIA 555 Query: 570 LLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 LL + + +++ + +S E LA+I+G+ KIA Y Sbjct: 556 ELLAAAYPSIEALMEASEEDLAAIDGVGPKIARSAYLFLR 595 >gi|228915707|ref|ZP_04079290.1| hypothetical protein bthur0012_29260 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228843937|gb|EEM89003.1| hypothetical protein bthur0012_29260 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 213 Score = 48.6 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 23/34 (67%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS 41 + G+Y + D ++Y+GKA++++ R+ ++ +S Sbjct: 19 DDSGIYFIKDYNDNIIYIGKAFSIKSRVLAHFNS 52 >gi|152991703|ref|YP_001357424.1| DNA uptake protein [Sulfurovum sp. NBC37-1] gi|151423564|dbj|BAF71067.1| DNA uptake protein [Sulfurovum sp. NBC37-1] Length = 111 Score = 48.6 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 13/59 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQ-----SFGTVKMISRSSPETLASIEGISKKIACKIYN 605 A+ S L +I GIG + +++ F + E +EGI ++ A + N Sbjct: 28 ASKSELMQIKGIGEKKADAIIKERKKGKFKSF--------EDFQRVEGIGEQTAKNVRN 78 >gi|123966300|ref|YP_001011381.1| helix-hairpin-helix DNA-binding motif-containing protein [Prochlorococcus marinus str. MIT 9515] gi|123200666|gb|ABM72274.1| Helix-hairpin-helix DNA-binding motif class 1 [Prochlorococcus marinus str. MIT 9515] Length = 110 Score = 48.6 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 550 KKAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605 +K L I G+G ++ F T K I+ ++ E L ++ G+ + K+ N Sbjct: 52 QKKLIEALKAIPGVGAKSAEAFYKAGFKTPKAITSANDEDLLAVPGVGINLVKKLKN 108 >gi|241668131|ref|ZP_04755709.1| DNA ligase (NAD(+)) [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876666|ref|ZP_05249376.1| DNA ligase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842687|gb|EET21101.1| DNA ligase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 678 Score = 48.6 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 22/52 (42%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +G + L FG+++ + E L I I + IA I + + + Sbjct: 526 GIKDVGEVSSEALANHFGSLESFREAKFEQLIEINDIGEIIAKNIVSFWQDS 577 >gi|332672001|ref|YP_004455009.1| DNA integrity scanning, DisA, linker region [Cellulomonas fimi ATCC 484] gi|332341039|gb|AEE47622.1| DNA integrity scanning, DisA, linker region [Cellulomonas fimi ATCC 484] Length = 356 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 6/38 (15%), Positives = 20/38 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L+ FG ++ + ++ + L +++G+ ++ A + Sbjct: 306 RLVAHFGGLQKLLAATIDDLMAVDGVGEQRARAVREGL 343 >gi|222096607|ref|YP_002530664.1| uvrc-like protein [Bacillus cereus Q1] gi|221240665|gb|ACM13375.1| UvrC-like protein [Bacillus cereus Q1] Length = 213 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 52/105 (49%), Gaps = 20/105 (19%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 + G+Y + D ++Y+GKA++++ R+ ++ +S ++ I + N + + + + Sbjct: 19 DDSGIYFIKDYNDNIIYIGKAFSIKSRVLAHFNSYSN---IKEYVHLFNKVAYLIEDS-- 73 Query: 68 EALLLEANMIK-----RLKPRFNILLRDDKSFP-----YILITDK 102 LL+ ++++ + KP N + K FP YI T+K Sbjct: 74 ---LLKRSLLQVTYMIKYKPVLNKEV--QKEFPELYTQYIKQTNK 113 >gi|254820448|ref|ZP_05225449.1| NAD-dependent DNA ligase LigA [Mycobacterium intracellulare ATCC 13950] Length = 693 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 24/49 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L FG + I +S E LA++EG+ IA + F Sbjct: 533 SIRHVGPTAARALATEFGDLDAIVSASTERLAAVEGVGPTIAAALTEWF 581 >gi|220907030|ref|YP_002482341.1| DNA protecting protein DprA [Cyanothece sp. PCC 7425] gi|219863641|gb|ACL43980.1| DNA protecting protein DprA [Cyanothece sp. PCC 7425] Length = 370 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 28/56 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +I G+GP+ + L Q FG++ + PE L ++ GI ++ +I + K Sbjct: 13 QIPGVGPVLIQRLQQRFGSLSEAWFAPPEALKTVAGIGQQTLEEIQSFRSKTDPEA 68 >gi|168182222|ref|ZP_02616886.1| helicase, RecD/TraA family [Clostridium botulinum Bf] gi|237793487|ref|YP_002861039.1| helicase, RecD/TraA family [Clostridium botulinum Ba4 str. 657] gi|182674605|gb|EDT86566.1| helicase, RecD/TraA family [Clostridium botulinum Bf] gi|229263170|gb|ACQ54203.1| helicase, RecD/TraA family [Clostridium botulinum Ba4 str. 657] Length = 744 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN-HFHKNT 611 I+GIGP+ + +++ FG T+ I ++ E L IEGI KK IY+ + +N Sbjct: 88 ISGIGPVTAKKIVKKFGEETL-NILENNIERLTEIEGIGKKKIEIIYDSYIKQNE 141 >gi|167627564|ref|YP_001678064.1| DNA ligase (NAD(+)) [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|190359258|sp|B0TY02|DNLJ_FRAP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|167597565|gb|ABZ87563.1| DNA ligase (NAD(+)) [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 678 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 22/52 (42%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +G + L FG+++ + E L I I + IA I + + + Sbjct: 526 GIKDVGEVSSEALANHFGSLESFREAKFEQLIEINDIGEIIAKNIVSFWQDS 577 >gi|37525354|ref|NP_928698.1| NAD-dependent DNA ligase LigA [Photorhabdus luminescens subsp. laumondii TTO1] gi|81416713|sp|Q7MBH2|DNLJ_PHOLL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|36784781|emb|CAE13691.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 672 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 19/45 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G L FG + + + E L ++ + + +A + N F Sbjct: 520 VGEATAANLAAHFGELDKLRSADEEALKEVQDVGEVVAKHVVNFF 564 >gi|319939206|ref|ZP_08013569.1| competence protein CelA [Streptococcus anginosus 1_2_62CV] gi|319811602|gb|EFW07878.1| competence protein CelA [Streptococcus anginosus 1_2_62CV] Length = 234 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 12/60 (20%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYNH 606 A S L I+GIG R + +L + S + L ++ G+ K K+ + Sbjct: 178 ADLSELQTISGIGQKRAQDILDY-------REANGKFNSVDDLKNVSGVGAKTLEKLKEY 230 >gi|315223048|ref|ZP_07864927.1| comEA protein [Streptococcus anginosus F0211] gi|315187998|gb|EFU21734.1| comEA protein [Streptococcus anginosus F0211] Length = 234 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 12/60 (20%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYNH 606 A S L I+GIG R + +L + S + L ++ G+ K K+ + Sbjct: 178 ADLSELQTISGIGQKRAQDILDY-------REANGKFSSVDDLKNVSGVGAKTLEKLKEY 230 >gi|313140334|ref|ZP_07802527.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] gi|313132844|gb|EFR50461.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] Length = 238 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 LD I G+GP+ + +L ++ + S + L + GI K KI Sbjct: 187 QLDSIPGVGPVTAQRILDHRRSIGRFT--SVDQLLDVSGIGAKTLTKI 232 >gi|311064462|ref|YP_003971187.1| hypothetical protein BBPR_1084 [Bifidobacterium bifidum PRL2010] gi|310866781|gb|ADP36150.1| Conserved hypothetical protein [Bifidobacterium bifidum PRL2010] Length = 270 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 LD I G+GP+ + +L ++ + S + L + GI K KI Sbjct: 219 QLDSIPGVGPVTAQRILDHRRSIGRFT--SVDQLLDVSGIGAKTLTKI 264 >gi|310287549|ref|YP_003938807.1| competence protein ComEA [Bifidobacterium bifidum S17] gi|309251485|gb|ADO53233.1| competence protein ComEA [Bifidobacterium bifidum S17] Length = 271 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 LD I G+GP+ + +L ++ + S + L + GI K KI Sbjct: 220 QLDSIPGVGPVTAQRILDHRRSIGRFT--SVDQLLDVSGIGAKTLTKI 265 >gi|224283184|ref|ZP_03646506.1| hypothetical protein BbifN4_05079 [Bifidobacterium bifidum NCIMB 41171] Length = 209 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 LD I G+GP+ + +L ++ + S + L + GI K KI Sbjct: 158 QLDSIPGVGPVTAQRILDHRRSIGRFT--SVDQLLDVSGIGAKTLTKI 203 >gi|319956700|ref|YP_004167963.1| php domain protein [Nitratifractor salsuginis DSM 16511] gi|319419104|gb|ADV46214.1| PHP domain protein [Nitratifractor salsuginis DSM 16511] Length = 578 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Query: 557 LDEINGIGPLRKRLLLQSF--GTVKMISRSSPE-TLASIEGISKKIACKIYN 605 L +I G+GP + + L + G+++ + +++ E + + G +K KI Sbjct: 99 LLKIEGLGPKKVKTLYEKLGIGSLEELKKAAEEHKIRELPGFGEKTEEKILK 150 >gi|297621454|ref|YP_003709591.1| NAD-dependent DNA ligase LigA [Waddlia chondrophila WSU 86-1044] gi|297376755|gb|ADI38585.1| NAD-dependent DNA ligase LigA [Waddlia chondrophila WSU 86-1044] Length = 665 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 21/49 (42%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G LL G + + + S E L I GI +K A + +F Sbjct: 512 GIKYVGAGTAELLANRSGDIDGLKQLSYEELLKINGIGEKAAESVIEYF 560 >gi|269219963|ref|ZP_06163817.1| DNA ligase, NAD-dependent [Actinomyces sp. oral taxon 848 str. F0332] gi|269210599|gb|EEZ76939.1| DNA ligase, NAD-dependent [Actinomyces sp. oral taxon 848 str. F0332] Length = 799 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 25/49 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP + + SFG++ +S E +A I+G+ + IA + F Sbjct: 635 SIRHVGPTAAKAIASSFGSLSAAREASVEEMAQIDGVGRVIAQSFLDWF 683 >gi|119774653|ref|YP_927393.1| DNA ligase (NAD(+)) [Shewanella amazonensis SB2B] gi|166216239|sp|A1S5R7|DNLJ_SHEAM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|119767153|gb|ABL99723.1| DNA ligase (NAD(+)) [Shewanella amazonensis SB2B] Length = 681 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 20/45 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G L + F +++ I + + L +E + +A + + F Sbjct: 532 VGEATAANLAKHFRSLEAIRDADVDALIQVEDVGTVVAQHVAHFF 576 >gi|15675329|ref|NP_269503.1| putative competence protein [Streptococcus pyogenes M1 GAS] gi|19746371|ref|NP_607507.1| competence protein [Streptococcus pyogenes MGAS8232] gi|71903805|ref|YP_280608.1| ComE operon protein 1 [Streptococcus pyogenes MGAS6180] gi|71910961|ref|YP_282511.1| COME operon protein 1 [Streptococcus pyogenes MGAS5005] gi|94988825|ref|YP_596926.1| COME operon protein 1 [Streptococcus pyogenes MGAS9429] gi|94990728|ref|YP_598828.1| COME operon protein 1 [Streptococcus pyogenes MGAS10270] gi|139473564|ref|YP_001128280.1| competence protein [Streptococcus pyogenes str. Manfredo] gi|306827080|ref|ZP_07460377.1| ComE operon protein 1 [Streptococcus pyogenes ATCC 10782] gi|13622509|gb|AAK34224.1| putative competence protein [Streptococcus pyogenes M1 GAS] gi|19748568|gb|AAL98006.1| putative competence protein [Streptococcus pyogenes MGAS8232] gi|71802900|gb|AAX72253.1| ComE operon protein 1 [Streptococcus pyogenes MGAS6180] gi|71853743|gb|AAZ51766.1| COME operon protein 1 [Streptococcus pyogenes MGAS5005] gi|94542333|gb|ABF32382.1| COME operon protein 1 [Streptococcus pyogenes MGAS9429] gi|94544236|gb|ABF34284.1| COME operon protein 1 [Streptococcus pyogenes MGAS10270] gi|134271811|emb|CAM30044.1| putative competence protein [Streptococcus pyogenes str. Manfredo] gi|304430714|gb|EFM33726.1| ComE operon protein 1 [Streptococcus pyogenes ATCC 10782] Length = 220 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 8/58 (13%) Query: 551 KAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 KA+ L I GIG R + ++ G K + E L + GI +K K+ + Sbjct: 163 KASLEELQHIPGIGAKRAQDIIDMRDKLGGFKAL-----EDLRQVSGIGEKTLEKLKD 215 >gi|261418256|ref|YP_003251938.1| DNA polymerase I [Geobacillus sp. Y412MC61] gi|319767784|ref|YP_004133285.1| DNA polymerase I [Geobacillus sp. Y412MC52] gi|261374713|gb|ACX77456.1| DNA polymerase I [Geobacillus sp. Y412MC61] gi|317112650|gb|ADU95142.1| DNA polymerase I [Geobacillus sp. Y412MC52] Length = 876 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + GIG LL+ FGTV+ + +S + + +K+ + H Sbjct: 192 GVPGIGEKTAVKLLRQFGTVENVL-ASIDEIK-----GEKLKETLRQH 233 >gi|150021611|ref|YP_001306965.1| helix-hairpin-helix repeat-containing competence protein ComEA [Thermosipho melanesiensis BI429] gi|149794132|gb|ABR31580.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermosipho melanesiensis BI429] Length = 184 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 8/55 (14%) Query: 556 PLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L ++ GIG ++ + ++ + FG V+ S E L ++GI KK KI Sbjct: 133 ELMKLPGIGKVKAQEIIEFRKKFGNVQ-----SFEDLLKVKGIGKKTLEKIKPFI 182 Score = 42.4 bits (98), Expect = 0.20, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S E L + GI K A +I Sbjct: 125 NINNASVEELMKLPGIGKVKAQEIIEF 151 >gi|119356222|ref|YP_910866.1| DNA protecting protein DprA [Chlorobium phaeobacteroides DSM 266] gi|119353571|gb|ABL64442.1| DNA protecting protein DprA [Chlorobium phaeobacteroides DSM 266] Length = 381 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + L +I GIGP R ++ + G+ + ++ T I GI +A +I + Sbjct: 9 SRILLLTLSQIPGIGPARINAIVSNLGSDISVLDATEGTFQHIPGIGVPLAKEIVSFL 66 >gi|303254423|ref|ZP_07340529.1| competence protein CelA [Streptococcus pneumoniae BS455] gi|302598590|gb|EFL65630.1| competence protein CelA [Streptococcus pneumoniae BS455] Length = 216 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605 KA+ L ++ G+G R + ++ + S + L + GI K K+ + Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGGKTIEKLKD 211 Query: 606 H 606 + Sbjct: 212 Y 212 >gi|225854458|ref|YP_002735970.1| competence protein [Streptococcus pneumoniae JJA] gi|225723600|gb|ACO19453.1| competence protein [Streptococcus pneumoniae JJA] Length = 216 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605 KA+ L ++ G+G R + ++ + S + L + GI K K+ + Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGGKTIEKLKD 211 Query: 606 H 606 + Sbjct: 212 Y 212 >gi|221231718|ref|YP_002510870.1| competence protein [Streptococcus pneumoniae ATCC 700669] gi|225858747|ref|YP_002740257.1| competence protein [Streptococcus pneumoniae 70585] gi|298229852|ref|ZP_06963533.1| competence protein [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254552|ref|ZP_06978138.1| competence protein [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503037|ref|YP_003724977.1| competence protein ComEA [Streptococcus pneumoniae TCH8431/19A] gi|220674178|emb|CAR68706.1| putative competence protein [Streptococcus pneumoniae ATCC 700669] gi|225720069|gb|ACO15923.1| competence protein [Streptococcus pneumoniae 70585] gi|298238632|gb|ADI69763.1| competence protein ComEA [Streptococcus pneumoniae TCH8431/19A] Length = 216 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605 KA+ L ++ G+G R + ++ + S + L + GI K K+ + Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGGKTIEKLKD 211 Query: 606 H 606 + Sbjct: 212 Y 212 >gi|194397453|ref|YP_002037588.1| competence protein ComEA [Streptococcus pneumoniae G54] gi|194357120|gb|ACF55568.1| competence protein (ComEA) [Streptococcus pneumoniae G54] Length = 216 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605 KA+ L ++ G+G R + ++ + S + L + GI K K+ + Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGGKTIEKLKD 211 Query: 606 H 606 + Sbjct: 212 Y 212 >gi|168485906|ref|ZP_02710414.1| competence protein [Streptococcus pneumoniae CDC1087-00] gi|183570977|gb|EDT91505.1| competence protein [Streptococcus pneumoniae CDC1087-00] Length = 216 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605 KA+ L ++ G+G R + ++ + S + L + GI K K+ + Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGGKTIEKLKD 211 Query: 606 H 606 + Sbjct: 212 Y 212 >gi|148992911|ref|ZP_01822530.1| competence protein CelA [Streptococcus pneumoniae SP9-BS68] gi|168490227|ref|ZP_02714426.1| competence protein [Streptococcus pneumoniae SP195] gi|147928363|gb|EDK79379.1| competence protein CelA [Streptococcus pneumoniae SP9-BS68] gi|183571424|gb|EDT91952.1| competence protein [Streptococcus pneumoniae SP195] gi|332073288|gb|EGI83767.1| comEA family protein [Streptococcus pneumoniae GA17570] Length = 216 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605 KA+ L ++ G+G R + ++ + S + L + GI K K+ + Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGGKTIEKLKD 211 Query: 606 H 606 + Sbjct: 212 Y 212 >gi|148988394|ref|ZP_01819841.1| competence protein CelA [Streptococcus pneumoniae SP6-BS73] gi|169833773|ref|YP_001694398.1| competence protein [Streptococcus pneumoniae Hungary19A-6] gi|225861158|ref|YP_002742667.1| competence protein [Streptococcus pneumoniae Taiwan19F-14] gi|147926075|gb|EDK77149.1| competence protein CelA [Streptococcus pneumoniae SP6-BS73] gi|168996275|gb|ACA36887.1| competence protein [Streptococcus pneumoniae Hungary19A-6] gi|225727207|gb|ACO23058.1| competence protein [Streptococcus pneumoniae Taiwan19F-14] gi|327389233|gb|EGE87578.1| comEA family protein [Streptococcus pneumoniae GA04375] Length = 216 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605 KA+ L ++ G+G R + ++ + S + L + GI K K+ + Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGGKTIEKLKD 211 Query: 606 H 606 + Sbjct: 212 Y 212 >gi|149006370|ref|ZP_01830082.1| competence protein CelA [Streptococcus pneumoniae SP18-BS74] gi|168494383|ref|ZP_02718526.1| competence protein [Streptococcus pneumoniae CDC3059-06] gi|147762147|gb|EDK69109.1| competence protein CelA [Streptococcus pneumoniae SP18-BS74] gi|183575677|gb|EDT96205.1| competence protein [Streptococcus pneumoniae CDC3059-06] Length = 216 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605 KA+ L ++ G+G R + ++ + S + L + GI K K+ + Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGGKTIEKLKD 211 Query: 606 H 606 + Sbjct: 212 Y 212 >gi|3211753|gb|AAC23741.1| competence protein [Streptococcus pneumoniae] Length = 216 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605 KA+ L ++ G+G R + ++ + S + L + GI K K+ + Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGGKTIEKLKD 211 Query: 606 H 606 + Sbjct: 212 Y 212 >gi|15902900|ref|NP_358450.1| competence protein CelA [Streptococcus pneumoniae R6] gi|116516340|ref|YP_816325.1| competence protein CelA [Streptococcus pneumoniae D39] gi|149002504|ref|ZP_01827438.1| competence protein CelA [Streptococcus pneumoniae SP14-BS69] gi|237650509|ref|ZP_04524761.1| competence protein [Streptococcus pneumoniae CCRI 1974] gi|237820823|ref|ZP_04596668.1| competence protein [Streptococcus pneumoniae CCRI 1974M2] gi|307127495|ref|YP_003879526.1| competence protein [Streptococcus pneumoniae 670-6B] gi|15458459|gb|AAK99660.1| Competence protein [Streptococcus pneumoniae R6] gi|116076916|gb|ABJ54636.1| competence protein CelA [Streptococcus pneumoniae D39] gi|147759441|gb|EDK66433.1| competence protein CelA [Streptococcus pneumoniae SP14-BS69] gi|306484557|gb|ADM91426.1| competence protein [Streptococcus pneumoniae 670-6B] gi|332075570|gb|EGI86038.1| comEA family protein [Streptococcus pneumoniae GA17545] gi|332076229|gb|EGI86695.1| comEA family protein [Streptococcus pneumoniae GA41301] Length = 216 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605 KA+ L ++ G+G R + ++ + S + L + GI K K+ + Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGGKTIEKLKD 211 Query: 606 H 606 + Sbjct: 212 Y 212 >gi|58617393|ref|YP_196592.1| DNA repair protein radC-like protein [Ehrlichia ruminantium str. Gardel] gi|58417005|emb|CAI28118.1| DNA repair protein radC homolog [Ehrlichia ruminantium str. Gardel] Length = 230 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 26/82 (31%) Query: 544 THRKRRKKAAYS----------PLDEI-----NGIGPLRK------RLLLQSFGTVKMIS 582 HRKR +K S L+ I RK + L++ FGT + Sbjct: 13 GHRKRVRKKLLSGGSKGLLDYEILEVILYSSYP-----RKDVKPLAKRLIKHFGTFAKVF 67 Query: 583 RSSPETLASIEGISKKIACKIY 604 + L + GI + A I+ Sbjct: 68 FADFNQLKEVPGIGEASASAIF 89 >gi|15900831|ref|NP_345435.1| competence protein CelA [Streptococcus pneumoniae TIGR4] gi|111658045|ref|ZP_01408747.1| hypothetical protein SpneT_02000778 [Streptococcus pneumoniae TIGR4] gi|149010400|ref|ZP_01831771.1| competence protein CelA [Streptococcus pneumoniae SP19-BS75] gi|182683900|ref|YP_001835647.1| competence protein CelA [Streptococcus pneumoniae CGSP14] gi|303259866|ref|ZP_07345841.1| competence protein CelA [Streptococcus pneumoniae SP-BS293] gi|303262280|ref|ZP_07348224.1| competence protein CelA [Streptococcus pneumoniae SP14-BS292] gi|303264702|ref|ZP_07350620.1| competence protein CelA [Streptococcus pneumoniae BS397] gi|303267231|ref|ZP_07353096.1| competence protein CelA [Streptococcus pneumoniae BS457] gi|303269517|ref|ZP_07355282.1| competence protein CelA [Streptococcus pneumoniae BS458] gi|14972428|gb|AAK75075.1| competence protein CelA [Streptococcus pneumoniae TIGR4] gi|147764881|gb|EDK71810.1| competence protein CelA [Streptococcus pneumoniae SP19-BS75] gi|182629234|gb|ACB90182.1| competence protein CelA [Streptococcus pneumoniae CGSP14] gi|302636603|gb|EFL67094.1| competence protein CelA [Streptococcus pneumoniae SP14-BS292] gi|302639071|gb|EFL69531.1| competence protein CelA [Streptococcus pneumoniae SP-BS293] gi|302640953|gb|EFL71335.1| competence protein CelA [Streptococcus pneumoniae BS458] gi|302643240|gb|EFL73522.1| competence protein CelA [Streptococcus pneumoniae BS457] gi|302645789|gb|EFL76018.1| competence protein CelA [Streptococcus pneumoniae BS397] Length = 216 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605 KA+ L ++ G+G R + ++ + S + L + GI K K+ + Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGGKTIEKLKD 211 Query: 606 H 606 + Sbjct: 212 Y 212 >gi|296876842|ref|ZP_06900890.1| competence protein CelA [Streptococcus parasanguinis ATCC 15912] gi|296432344|gb|EFH18143.1| competence protein CelA [Streptococcus parasanguinis ATCC 15912] Length = 222 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 12/62 (19%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605 +A + L ++GIG R + ++ + S + L ++ GI +K K+ + Sbjct: 165 RATETELQTVSGIGQKRAQDIIAY-------REANGPFRSVDDLKNVSGIGEKTLEKLRD 217 Query: 606 HF 607 F Sbjct: 218 AF 219 >gi|315231273|ref|YP_004071709.1| ski2-type helicase [Thermococcus barophilus MP] gi|315184301|gb|ADT84486.1| putative ski2-type helicase [Thermococcus barophilus MP] Length = 755 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 563 IGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 IG R R L + F V I ++ P L ++EGI K+ +IY HF Sbjct: 674 IGRRRARALYNAGFKNVNDIVKAKPSELLAVEGIGVKVLERIYRHF 719 >gi|332359434|gb|EGJ37254.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK355] Length = 652 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 30/55 (54%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G R+LL+ F + +S++S E +A+I+ + IA ++ +F + S Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQEEIAAIDSLGTVIAQSLHTYFEQEGSQ 556 >gi|328946560|gb|EGG40699.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1087] Length = 652 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 30/55 (54%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G R+LL+ F + +S++S E +A+I+ + IA ++ +F + S Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQEEIAAIDSLGTVIAQSLHTYFEQEGSQ 556 >gi|327489925|gb|EGF21714.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1058] Length = 652 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 30/55 (54%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G R+LL+ F + +S++S E +A+I+ + IA ++ +F + S Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQEEIAAIDSLGTVIAQSLHTYFEQEGSQ 556 >gi|327474802|gb|EGF20207.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK408] Length = 652 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 30/55 (54%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G R+LL+ F + +S++S E +A+I+ + IA ++ +F + S Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQEEIAAIDSLGTVIAQSLHTYFEQEGSQ 556 >gi|327470726|gb|EGF16182.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK330] Length = 652 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 30/55 (54%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G R+LL+ F + +S++S E +A+I+ + IA ++ +F + S Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQEEIAAIDSLGTVIAQSLHTYFEQEGSQ 556 >gi|327461089|gb|EGF07422.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1057] Length = 652 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 30/55 (54%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G R+LL+ F + +S++S E +A+I+ + IA ++ +F + S Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQEEIAAIDSLGTVIAQSLHTYFEQEGSQ 556 >gi|325696052|gb|EGD37943.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK160] Length = 652 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 30/55 (54%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G R+LL+ F + +S++S E +A+I+ + IA ++ +F + S Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQEEIAAIDSLGTVIAQSLHTYFEQEGSQ 556 >gi|325694926|gb|EGD36831.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK150] Length = 652 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 30/55 (54%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G R+LL+ F + +S++S E +A+I+ + IA ++ +F + S Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQEEIAAIDSLGTVIAQSLHTYFEQEGSQ 556 >gi|325690880|gb|EGD32881.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK115] Length = 652 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 30/55 (54%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G R+LL+ F + +S++S E +A+I+ + IA ++ +F + S Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQEEIAAIDSLGTVIAQSLHTYFEQEGSQ 556 >gi|325687188|gb|EGD29210.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK72] Length = 652 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 30/55 (54%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G R+LL+ F + +S++S E +A+I+ + IA ++ +F + S Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQEEIAAIDSLGTVIAQSLHTYFEQEGSQ 556 >gi|324991571|gb|EGC23504.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK353] Length = 652 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 30/55 (54%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G R+LL+ F + +S++S E +A+I+ + IA ++ +F + S Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQEEIAAIDSLGTVIAQSLHTYFEQEGSQ 556 >gi|323351288|ref|ZP_08086944.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis VMC66] gi|322122512|gb|EFX94223.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis VMC66] Length = 652 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 30/55 (54%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G R+LL+ F + +S++S E +A+I+ + IA ++ +F + S Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQEEIAAIDSLGTVIAQSLHTYFEQEGSQ 556 >gi|78188256|ref|YP_378594.1| NAD-dependent DNA ligase [Chlorobium chlorochromatii CaD3] gi|123743484|sp|Q3ATX4|DNLJ_CHLCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|78170455|gb|ABB27551.1| NAD-dependent DNA ligase [Chlorobium chlorochromatii CaD3] Length = 667 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 38/105 (36%), Gaps = 28/105 (26%) Query: 527 LYFIQR-----------------LR--DEAHRFAITTHRKRRKKAAYSPLDEINGIGPLR 567 LY +Q +R DE+ R R L I +G Sbjct: 473 LYLLQEPQLERMERMGKKSAQNLIRALDES--------RTRSYDRLLYAL-GIRHVGRAT 523 Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 R L +F T+ + +++ E LA + I +A I + F K +S Sbjct: 524 ARELAHAFPTLDALMQANEERLAEVPDIGTTVAQSIVDFFAKPSS 568 >gi|307546309|ref|YP_003898788.1| DNA ligase, NAD-dependent [Halomonas elongata DSM 2581] gi|307218333|emb|CBV43603.1| DNA ligase, NAD-dependent [Halomonas elongata DSM 2581] Length = 700 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 22/47 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L + FGT++ + + + L ++ + +A ++ F + Sbjct: 543 VGEATAANLARHFGTLEALMDAERDALEQVDDVGPIVAAHVHTFFRQ 589 >gi|297529110|ref|YP_003670385.1| DNA polymerase I [Geobacillus sp. C56-T3] gi|297252362|gb|ADI25808.1| DNA polymerase I [Geobacillus sp. C56-T3] Length = 876 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + GIG LL+ FGTV+ + +S + + +K+ + H Sbjct: 192 GVPGIGEKTAVKLLRQFGTVENVL-ASIDEIK-----GEKLKETLRQH 233 >gi|258651107|ref|YP_003200263.1| DNA integrity scanning protein DisA [Nakamurella multipartita DSM 44233] gi|258554332|gb|ACV77274.1| protein of unknown function DUF147 [Nakamurella multipartita DSM 44233] Length = 362 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 23/51 (45%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L I + P L+Q FG ++ + ++ L +++G+ + A + Sbjct: 296 LSGIPRVPPAVLDRLIQHFGNLQGLLAATAADLQAVDGVGEARARVVREGL 346 >gi|118576895|ref|YP_876638.1| superfamily II helicase [Cenarchaeum symbiosum A] gi|118195416|gb|ABK78334.1| superfamily II helicase [Cenarchaeum symbiosum A] Length = 707 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 5/62 (8%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKM---ISRSSPETLASIEGISKKIACKIYNHF 607 KA PL I GIG +R R L + G +K ++ E L+ +EGI +A I + Sbjct: 646 KAELVPLVSIKGIGRVRSRRLFR--GGIKGPGDLAAVPVERLSRVEGIGATLANNIKSQL 703 Query: 608 HK 609 K Sbjct: 704 RK 705 >gi|56421265|ref|YP_148583.1| DNA polymerase I [Geobacillus kaustophilus HTA426] gi|56381107|dbj|BAD77015.1| DNA-directed DNA polymerase I [Geobacillus kaustophilus HTA426] Length = 878 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + GIG LL+ FGTV+ + +S + + +K+ + H Sbjct: 194 GVPGIGEKTAVKLLRQFGTVENVL-ASIDEIK-----GEKLKETLRQH 235 >gi|332880018|ref|ZP_08447702.1| DNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682014|gb|EGJ54927.1| DNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 663 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 23/45 (51%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + L + + T++ + ++ E L ++ I +IA + + F Sbjct: 512 VGETVAKKLARHYKTIEALEAATIEQLIEVDEIGNQIASSVVSFF 556 >gi|332373636|gb|AEE61959.1| unknown [Dendroctonus ponderosae] Length = 241 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 25/54 (46%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 L I I LL F T++ I R+S L+S G+ + A +++ +N Sbjct: 185 LTAIKPINKTDAMNLLTRFKTLEGIIRASESQLSSCPGLGPRKAKRLFKVLREN 238 >gi|261409953|ref|YP_003246194.1| Excinuclease ABC subunit C domain-containing protein [Paenibacillus sp. Y412MC10] gi|261286416|gb|ACX68387.1| Excinuclease ABC C subunit domain protein [Paenibacillus sp. Y412MC10] Length = 118 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G++ + +L+VGKA L+ RIK + + + +++ +I V V Sbjct: 39 GIFMFYNSKEELLFVGKARKLRPRIKKHFEDSVSPIKEHR--NEVTSIEVCVIEDAVHRE 96 Query: 71 LLEANMIKRLKPRFNI 86 + E +I K ++N+ Sbjct: 97 IYETYIINEFKAKYNV 112 >gi|159040904|ref|YP_001540156.1| DEAD/DEAH box helicase domain-containing protein [Caldivirga maquilingensis IC-167] gi|226740604|sp|A8MB76|HELS_CALMQ RecName: Full=Putative ski2-type helicase gi|157919739|gb|ABW01166.1| DEAD/DEAH box helicase domain protein [Caldivirga maquilingensis IC-167] Length = 756 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 559 EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + G+G +R R L + + +++ +++++ L I GI KIA I H+ Sbjct: 674 NLEGVGRVRARALYAAGYRSIEDLAKANVSDLTRIRGIGDKIAGSIIEQAHQ 725 >gi|78043654|ref|YP_360397.1| DNA polymerase family X protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995769|gb|ABB14668.1| DNA polymerase, X family [Carboxydothermus hydrogenoformans Z-2901] Length = 550 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 14/67 (20%) Query: 556 PLDEINGIGPLRKRLLLQSF-----GTVKMISRSSPE------TLASIEGISKKIACKIY 604 L+E+ GIG + +L+ + G + + E L I GI K A +IY Sbjct: 51 RLEELPGIGKNLREKILEFYRTGRIGEYEKLRE---EIPLIIFDLLKIPGIGVKTAKQIY 107 Query: 605 NHFHKNT 611 + NT Sbjct: 108 ETYRPNT 114 Score = 38.5 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 3/51 (5%) Query: 557 LDEINGIGPLRKRLLLQSFG--TVKMISR-SSPETLASIEGISKKIACKIY 604 L +I GIG + + +++ T+ + + L I GI K +I Sbjct: 92 LLKIPGIGVKTAKQIYETYRPNTLDEVESLAKAHKLKEIPGIGSKTEQQIL 142 >gi|60681965|ref|YP_212109.1| putative DNA ligase [Bacteroides fragilis NCTC 9343] gi|81314971|sp|Q5LCI0|DNLJ_BACFN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|60493399|emb|CAH08185.1| putative DNA ligase [Bacteroides fragilis NCTC 9343] Length = 665 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 28/50 (56%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + + +SF ++ + + ETL +I+ I +KIA I N+F ++ Sbjct: 515 VGETVAKKIAKSFKDIEELENADLETLINIDEIGEKIARSILNYFANESN 564 >gi|56421153|ref|YP_148471.1| DNA repair protein RadC [Geobacillus kaustophilus HTA426] gi|73913735|sp|Q5KWN3|Y2618_GEOKA RecName: Full=UPF0758 protein GK2618 gi|56380995|dbj|BAD76903.1| DNA repair protein [Geobacillus kaustophilus HTA426] Length = 226 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 20/39 (51%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + LL+ F ++ + ++ E + +I+GI A +I Sbjct: 50 QRLLRHFEGLRPLKDATVEEMTNIKGIGPTKAVQILAAL 88 >gi|416913|sp|Q04957|DPO1_BACCA RecName: Full=DNA polymerase I; Short=POL I gi|912445|dbj|BAA02361.1| DNA polymerase [Bacillus caldotenax] Length = 877 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + GIG LL+ FGTV+ + +S + + +K+ + H Sbjct: 192 GVPGIGEKTAVKLLRQFGTVENVL-ASIDEIK-----GEKLKETLRQH 233 >gi|253565642|ref|ZP_04843097.1| DNA ligase [Bacteroides sp. 3_2_5] gi|251945921|gb|EES86328.1| DNA ligase [Bacteroides sp. 3_2_5] Length = 665 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 28/50 (56%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + + +SF ++ + + ETL +I+ I +KIA I N+F ++ Sbjct: 515 VGETVAKKIAKSFKDIEELENADLETLINIDEIGEKIARSILNYFANESN 564 >gi|124262437|gb|ABM97416.1| DNA polymerase I [Bacillus sp. G(2006)] Length = 876 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + GIG LL+ FGTV+ + +S + + +K+ + H Sbjct: 192 GVPGIGEKTAVKLLRQFGTVENVL-ASIDEIK-----GEKLKETLRQH 233 >gi|83647417|ref|YP_435852.1| DNA ligase, NAD-dependent [Hahella chejuensis KCTC 2396] gi|123767368|sp|Q2SD47|DNLJ_HAHCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|83635460|gb|ABC31427.1| DNA ligase, NAD-dependent [Hahella chejuensis KCTC 2396] Length = 683 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 22/48 (45%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +G ++L Q F T+ ++ +++ E L I A I + F + Sbjct: 525 VGEATAKVLAQHFPTLDLLKQATEEDLVEAPDIGPISAGHIRSFFQQE 572 >gi|21910610|ref|NP_664878.1| putative competence protein [Streptococcus pyogenes MGAS315] gi|28895701|ref|NP_802051.1| competence protein [Streptococcus pyogenes SSI-1] gi|94994651|ref|YP_602749.1| COME operon protein 1 [Streptococcus pyogenes MGAS10750] gi|21904811|gb|AAM79681.1| putative competence protein [Streptococcus pyogenes MGAS315] gi|28810950|dbj|BAC63884.1| putative competence protein [Streptococcus pyogenes SSI-1] gi|94548159|gb|ABF38205.1| COME operon protein 1 [Streptococcus pyogenes MGAS10750] Length = 220 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 8/58 (13%) Query: 551 KAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 KA+ L I GIG R + ++ G K + E L + GI +K K+ + Sbjct: 163 KASLEELQHIPGIGAKRAQDIIDMRDKLGGFKAL-----EDLRQVSGIGEKTLEKLKD 215 >gi|265764018|ref|ZP_06092586.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_16] gi|263256626|gb|EEZ27972.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_16] Length = 665 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 28/50 (56%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + + +SF ++ + + ETL +I+ I +KIA I N+F ++ Sbjct: 515 VGETVAKKIAKSFKDIEELENADLETLINIDEIGEKIARSILNYFANESN 564 >gi|297544588|ref|YP_003676890.1| hypothetical protein Tmath_1161 [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842363|gb|ADH60879.1| conserved hypothetical protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 389 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKI 599 PL+ I IG L+ FG+ + + ++ E L + G S + Sbjct: 319 PLEFIPNIGKKSIEKLVNYFGSELYALHEAAYEELEKVVGTSNAL 363 >gi|238897965|ref|YP_002923645.1| DNA ligase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|257096312|sp|C4K4K4|DNLJ_HAMD5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|229465723|gb|ACQ67497.1| DNA ligase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 702 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 3/67 (4%) Query: 547 KRRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 K+ +K ++ I +G L FG + ++ ++ ETL + + + +A + Sbjct: 527 KKSQKTTFARFLYALGIREVGETTAANLALYFGQLDLLRKADIETLKKVPDVGEVVAKNL 586 Query: 604 YNHFHKN 610 + F Sbjct: 587 VDFFGNE 593 >gi|225451021|ref|XP_002281063.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 452 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 21/35 (60%) Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 FG++ I +S E LA GI ++ ++Y+ FH+ Sbjct: 318 FGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 352 >gi|301163404|emb|CBW22954.1| putative DNA ligase [Bacteroides fragilis 638R] Length = 665 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 28/50 (56%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + + +SF ++ + + ETL +I+ I +KIA I N+F ++ Sbjct: 515 VGETVAKKIAKSFKDIEELENADLETLINIDEIGEKIARSILNYFANESN 564 >gi|253988889|ref|YP_003040245.1| NAD-dependent DNA ligase LigA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780339|emb|CAQ83500.1| DNA ligase [Photorhabdus asymbiotica] Length = 672 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 21/47 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L FG + + + E L ++ + + +A + + F++ Sbjct: 520 VGEATAANLAAYFGDLNKLRAADEEALKEVQDVGEVVAKHVVHFFNE 566 >gi|225572684|ref|ZP_03781439.1| hypothetical protein RUMHYD_00873 [Blautia hydrogenotrophica DSM 10507] gi|225039920|gb|EEG50166.1| hypothetical protein RUMHYD_00873 [Blautia hydrogenotrophica DSM 10507] Length = 622 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 K YS I IG +++ + F ++ + +S + ++ I+GI IA + Sbjct: 462 KMIYS--LGIPNIGLANAKVICRHFDYDLERLKNASEDEVSGIDGIGPVIAKNLVRFLEN 519 Query: 610 NTSH 613 + Sbjct: 520 EENQ 523 >gi|53713694|ref|YP_099686.1| DNA ligase [Bacteroides fragilis YCH46] gi|81382396|sp|Q64TM7|DNLJ_BACFR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|52216559|dbj|BAD49152.1| DNA ligase [Bacteroides fragilis YCH46] Length = 665 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 28/50 (56%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + + +SF ++ + + ETL +I+ I +KIA I N+F ++ Sbjct: 515 VGETVAKKIAKSFKDIEELENADLETLINIDEIGEKIARSILNYFANESN 564 >gi|316973744|gb|EFV57303.1| DNA excision repair protein ERCC-1 [Trichinella spiralis] Length = 340 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 3/50 (6%) Query: 563 IGPLRKR---LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I P+ K L+ FG+++ I+ ++ E L+ G+ ++ A K++ F K Sbjct: 264 IKPITKTDADSLIDMFGSLRKIAEATEEELSLCPGMGRRKAKKLHEGFAK 313 >gi|288870885|ref|ZP_06115627.2| DNA ligase, NAD-dependent [Clostridium hathewayi DSM 13479] gi|288865557|gb|EFC97855.1| DNA ligase, NAD-dependent [Clostridium hathewayi DSM 13479] Length = 645 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Query: 559 EINGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616 I+GIG ++L + F + ++ E L ++GI +A +F + + T Sbjct: 490 GISGIGLANAKMLCRKFKFDFDRMRHATAEELVEVDGIGAVLADAWIRYF-ADEKNQET 547 >gi|256959858|ref|ZP_05564029.1| NAD-dependent DNA ligase [Enterococcus faecalis Merz96] gi|293385046|ref|ZP_06630880.1| DNA ligase, NAD-dependent [Enterococcus faecalis R712] gi|293389317|ref|ZP_06633778.1| DNA ligase, NAD-dependent [Enterococcus faecalis S613] gi|312906035|ref|ZP_07765048.1| DNA ligase, NAD-dependent [Enterococcus faecalis DAPTO 512] gi|312909381|ref|ZP_07768237.1| DNA ligase, NAD-dependent [Enterococcus faecalis DAPTO 516] gi|256950354|gb|EEU66986.1| NAD-dependent DNA ligase [Enterococcus faecalis Merz96] gi|291077724|gb|EFE15088.1| DNA ligase, NAD-dependent [Enterococcus faecalis R712] gi|291081339|gb|EFE18302.1| DNA ligase, NAD-dependent [Enterococcus faecalis S613] gi|310628030|gb|EFQ11313.1| DNA ligase, NAD-dependent [Enterococcus faecalis DAPTO 512] gi|311290405|gb|EFQ68961.1| DNA ligase, NAD-dependent [Enterococcus faecalis DAPTO 516] Length = 676 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 27/53 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G ++L + FG + +SR++ E + +++ I + IA + +F Sbjct: 516 GIRHVGAKAAKILAEHFGDLSTLSRATAEEIVALDSIGEIIADSVVTYFENEE 568 >gi|289578308|ref|YP_003476935.1| hypothetical protein Thit_1106 [Thermoanaerobacter italicus Ab9] gi|289528021|gb|ADD02373.1| conserved hypothetical protein [Thermoanaerobacter italicus Ab9] Length = 389 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKI 599 PL+ I IG L+ FG+ + + ++ E L + G S + Sbjct: 319 PLEFIPNIGKKSIEKLVNYFGSELYALHEAAYEELEKVVGTSNAL 363 >gi|209559639|ref|YP_002286111.1| Putative competence protein [Streptococcus pyogenes NZ131] gi|209540840|gb|ACI61416.1| Putative competence protein [Streptococcus pyogenes NZ131] Length = 220 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 8/58 (13%) Query: 551 KAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 KA+ L I GIG R + ++ G K + E L + GI +K K+ + Sbjct: 163 KASLEELQHIPGIGAKRAQDIIDMRDKLGGFKAL-----EDLRQVSGIGEKTLEKLKD 215 >gi|167040191|ref|YP_001663176.1| hypothetical protein Teth514_1553 [Thermoanaerobacter sp. X514] gi|300914275|ref|ZP_07131591.1| conserved hypothetical protein [Thermoanaerobacter sp. X561] gi|307724489|ref|YP_003904240.1| hypothetical protein Thet_1349 [Thermoanaerobacter sp. X513] gi|166854431|gb|ABY92840.1| conserved hypothetical protein [Thermoanaerobacter sp. X514] gi|300889210|gb|EFK84356.1| conserved hypothetical protein [Thermoanaerobacter sp. X561] gi|307581550|gb|ADN54949.1| hypothetical protein Thet_1349 [Thermoanaerobacter sp. X513] Length = 390 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKI 599 PL+ I IG L+ FG+ + + ++ E L + G S + Sbjct: 320 PLEFIPNIGKKSIEKLVNYFGSELYALHEAAYEELEKVVGTSNAL 364 >gi|16331955|ref|NP_442683.1| hypothetical protein sll0664 [Synechocystis sp. PCC 6803] gi|1006601|dbj|BAA10754.1| sll0664 [Synechocystis sp. PCC 6803] Length = 306 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 9/86 (10%) Query: 3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIR--F 60 + +P G+Y ++D V YVGKA N++ R +H + + + Sbjct: 18 KDNLPIFSGIYYVVDEQNLVWYVGKAKNIRNR----WQGKSHHRFFQLESQKNHYFSIYY 73 Query: 61 TVTCTEVE-ALLLEANMIKRLKPRFN 85 + E+E A + E I++ P+ N Sbjct: 74 RIVD-EIELAKI-EKEEIEKYTPQLN 97 >gi|227328979|ref|ZP_03833003.1| NAD-dependent DNA ligase LigA [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 684 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 8/52 (15%), Positives = 22/52 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L FG+++ + + + L + + K +A + + + + T Sbjct: 530 VGESTAANLAAHFGSLEALFAADEDALLEVPDVGKVVAAHVRHFLEEEHNQT 581 >gi|227114832|ref|ZP_03828488.1| NAD-dependent DNA ligase LigA [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 684 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 8/52 (15%), Positives = 22/52 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L FG+++ + + + L + + K +A + + + + T Sbjct: 530 VGESTAANLAAHFGSLEALFAADEDALLEVPDVGKVVAAHVRHFLEEEHNQT 581 >gi|304398312|ref|ZP_07380186.1| DNA ligase, NAD-dependent [Pantoea sp. aB] gi|304354178|gb|EFM18551.1| DNA ligase, NAD-dependent [Pantoea sp. aB] Length = 672 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 22/50 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FG ++ + + E L ++ + K +A + N + ++ Sbjct: 520 VGEATAANLANHFGELQKVMDADLEALIAVPDVGKVVATHVRNFMEEESN 569 >gi|282899795|ref|ZP_06307757.1| hypothetical protein CRC_01662 [Cylindrospermopsis raciborskii CS-505] gi|282901895|ref|ZP_06309798.1| hypothetical protein CRC_03337 [Cylindrospermopsis raciborskii CS-505] gi|281193233|gb|EFA68227.1| hypothetical protein CRC_03337 [Cylindrospermopsis raciborskii CS-505] gi|281195277|gb|EFA70212.1| hypothetical protein CRC_01662 [Cylindrospermopsis raciborskii CS-505] Length = 114 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 11/82 (13%) Query: 6 MPECPGVYQ-MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +P GVY D +LYVG + N++KR H ++ + + N I V Sbjct: 12 LPNTSGVYYVYKDYD--LLYVGSSSNIRKR----FMK-GHNYQNKFIEAGANLISCVVCE 64 Query: 65 TEVEALLLEANMIKRLKPRFNI 86 E LE I RLKP+ N Sbjct: 65 NYAE---LELQEILRLKPKMNR 83 >gi|229825369|ref|ZP_04451438.1| hypothetical protein GCWU000182_00723 [Abiotrophia defectiva ATCC 49176] gi|229790373|gb|EEP26487.1| hypothetical protein GCWU000182_00723 [Abiotrophia defectiva ATCC 49176] Length = 664 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Query: 559 EINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I IG +L+ + F I ++ E L I+GI + +A +F+K+ + Sbjct: 497 GIANIGLATAKLICRYFNNDFDKIIKAKEEELTQIDGIGEVMAKVFAEYFNKDEN 551 >gi|229156711|ref|ZP_04284798.1| hypothetical protein bcere0010_28960 [Bacillus cereus ATCC 4342] gi|228626631|gb|EEK83371.1| hypothetical protein bcere0010_28960 [Bacillus cereus ATCC 4342] Length = 213 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 23/34 (67%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS 41 + G+Y + D ++Y+GKA++++ R+ ++ +S Sbjct: 19 DDSGIYFIKDYNDNIIYIGKAFSIKSRVLAHFNS 52 >gi|226596530|ref|YP_002791886.1| hypothetical protein HRPV-1_gp1 [Halorubrum pleomorphic virus 1] gi|226427412|gb|ACO54896.1| ORF1 [Halorubrum pleomorphic virus 1] Length = 500 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%) Query: 557 LDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN 605 L E+ G+G + L G T+ + +S + +ASI+GIS+ A K+ + Sbjct: 411 LQEVPGLGETKLDRLEAH-GIQTLSDVRLASVDEIASIDGISESFAEKLKD 460 >gi|158319509|ref|YP_001512016.1| DNA integrity scanning protein DisA [Alkaliphilus oremlandii OhILAs] gi|158139708|gb|ABW18020.1| protein of unknown function DUF147 [Alkaliphilus oremlandii OhILAs] Length = 358 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 21/40 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 LL+ F + + I ++S E L ++GI + A I + + Sbjct: 308 NLLKQFISFQKILKASTEQLDDVDGIGEARARAIKDGLRR 347 >gi|238799224|ref|ZP_04642672.1| DNA ligase [Yersinia mollaretii ATCC 43969] gi|238716921|gb|EEQ08789.1| DNA ligase [Yersinia mollaretii ATCC 43969] Length = 670 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 7/48 (14%), Positives = 18/48 (37%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +G L F + + + + L S+ + + +A + N + Sbjct: 520 VGEATAANLAAHFRNMANLRAADIDALKSVPDVGEVVAKHVLNFLSEE 567 >gi|126651411|ref|ZP_01723615.1| YqxK [Bacillus sp. B14905] gi|126591664|gb|EAZ85760.1| YqxK [Bacillus sp. B14905] Length = 390 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 3/49 (6%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMIS-RSSPETLASIEGISKKIACKI 603 PLD I GIGP LLQ+FGT I R + E L I + +K+A I Sbjct: 320 PLDFIPGIGPKMMERLLQAFGTEMNILHRVTIEQLEQI--VPQKMAKLI 366 >gi|229148695|ref|ZP_04276945.1| DNA ligase [Bacillus cereus m1550] gi|228634703|gb|EEK91282.1| DNA ligase [Bacillus cereus m1550] Length = 669 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 6/67 (8%) Query: 551 KAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L+ I +G R + F T+ + +++ E L +I I +K+A + Sbjct: 498 KSKENSLERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKAINEIGEKMAQSVV 557 Query: 605 NHFHKNT 611 +F Sbjct: 558 TYFDNED 564 >gi|121535766|ref|ZP_01667568.1| conserved hypothetical protein [Thermosinus carboxydivorans Nor1] gi|121305665|gb|EAX46605.1| conserved hypothetical protein [Thermosinus carboxydivorans Nor1] Length = 395 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 3/49 (6%) Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKI 603 PL+ + G+G LL FG+ ++++ +S +A++ I +K+A +I Sbjct: 325 PLEFVPGLGRKLLEKLLDRFGSEMRILHTASLAEIAAV--IGEKLAVEI 371 >gi|57239372|ref|YP_180508.1| DNA repair protein radC-like protein [Ehrlichia ruminantium str. Welgevonden] gi|58579339|ref|YP_197551.1| DNA repair protein radC-like protein [Ehrlichia ruminantium str. Welgevonden] gi|57161451|emb|CAH58376.1| DNA repair protein RadC [Ehrlichia ruminantium str. Welgevonden] gi|58417965|emb|CAI27169.1| DNA repair protein radC homolog [Ehrlichia ruminantium str. Welgevonden] Length = 230 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 18/78 (23%) Query: 544 THRKRRKKAAYS----------PLDEI-------NGIGPLRKRLLLQSFGTVKMISRSSP 586 HRKR +K S L+ I + P + L++ FGT + + Sbjct: 13 GHRKRVRKKLLSGGSKGLLDYEILEVILYSSYPRKDVKP-LAKRLIKHFGTFAKVFFADF 71 Query: 587 ETLASIEGISKKIACKIY 604 L + GI + A I+ Sbjct: 72 NQLKEVPGIGEASASAIF 89 >gi|302876559|ref|YP_003845192.1| DNA integrity scanning, DisA, linker region [Clostridium cellulovorans 743B] gi|307687231|ref|ZP_07629677.1| DNA integrity scanning protein DisA [Clostridium cellulovorans 743B] gi|302579416|gb|ADL53428.1| DNA integrity scanning, DisA, linker region [Clostridium cellulovorans 743B] Length = 357 Score = 48.2 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 20/42 (47%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L+ SF + I ++S E L +EGI + A I N + Sbjct: 305 INNLVNSFDNFQEILKASIEDLDKVEGIGEARAKAIKNGLRR 346 >gi|294495240|ref|YP_003541733.1| DEAD/DEAH box helicase [Methanohalophilus mahii DSM 5219] gi|292666239|gb|ADE36088.1| DEAD/DEAH box helicase domain protein [Methanohalophilus mahii DSM 5219] Length = 729 Score = 48.2 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 L EI +G R R L + + + + ++ + + LA I G KIA KI ++ + T Sbjct: 651 ELVEIPNVGRARARKLFKKGYRSRQKLATADEKQLAGIVG--PKIAQKILSYLGRETDS 707 >gi|206581932|pdb|3CMA|Y Chain Y, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|206581965|pdb|3CME|Y Chain Y, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui Length = 240 Score = 48.2 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 555 SPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605 + L +I+G+GP + L ++ F +V+ + + LA + GI +A +I Sbjct: 15 TELTDISGVGPSKAESLREAGFESVEDVRGADQSALADVSGIGNALAARIKA 66 >gi|282882711|ref|ZP_06291318.1| late competence protein [Peptoniphilus lacrimalis 315-B] gi|281297372|gb|EFA89861.1| late competence protein [Peptoniphilus lacrimalis 315-B] Length = 204 Score = 48.2 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 A+ L +I G+GP ++ + S E L +++GI K K+ ++ Sbjct: 149 ASKDELMKIPGVGPKTADKIIDY---REKFQFKSVEDLKNVDGIGDKKFEKLKDYL 201 Score = 38.5 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 8/27 (29%), Positives = 15/27 (55%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 ++ +S + L I G+ K A KI ++ Sbjct: 145 NLNSASKDELMKIPGVGPKTADKIIDY 171 >gi|240145659|ref|ZP_04744260.1| DNA ligase, NAD-dependent [Roseburia intestinalis L1-82] gi|257202247|gb|EEV00532.1| DNA ligase, NAD-dependent [Roseburia intestinalis L1-82] Length = 671 Score = 48.2 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 8/54 (14%), Positives = 24/54 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G + +++ F ++ + + + L ++ + + A I+ FH + Sbjct: 513 GIPNVGKAAAKTIMKRFPSILDLEDADRDALMEVDDVGEVSADCIFRFFHDEKN 566 >gi|15825966|pdb|1JJ2|X Chain X, Fully Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution gi|20151011|pdb|1KQS|X Chain X, The Haloarcula Marismortui 50s Complexed With A Pretranslocational Intermediate In Protein Synthesis gi|22218945|pdb|1K8A|Z Chain Z, Co-Crystal Structure Of Carbomycin A Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui gi|22218979|pdb|1K9M|Z Chain Z, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui gi|22219022|pdb|1KD1|Z Chain Z, Co-Crystal Structure Of Spiramycin Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui gi|22219349|pdb|1M1K|Z Chain Z, Co-Crystal Structure Of Azithromycin Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui gi|24159044|pdb|1M90|Z Chain Z, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And Sparsomycin Bound To The 50s Ribosomal Subunit gi|34811141|pdb|1K73|Z Chain Z, Co-Crystal Structure Of Anisomycin Bound To The 50s Ribosomal Subunit gi|34811171|pdb|1KC8|Z Chain Z, Co-Crystal Structure Of Blasticidin S Bound To The 50s Ribosomal Subunit gi|34811210|pdb|1N8R|Z Chain Z, Structure Of Large Ribosomal Subunit In Complex With Virginiamycin M gi|34811240|pdb|1NJI|Z Chain Z, Structure Of Chloramphenicol Bound To The 50s Ribosomal Subunit gi|37927924|pdb|1Q7Y|Z Chain Z, Crystal Structure Of Ccdap-Puromycin Bound At The Peptidyl Transferase Center Of The 50s Ribosomal Subunit gi|37927959|pdb|1Q81|Z Chain Z, Crystal Structure Of Minihelix With 3' Puromycin Bound To A- Site Of The 50s Ribosomal Subunit. gi|37927995|pdb|1Q82|Z Chain Z, Crystal Structure Of Cc-Puromycin Bound To The A-Site Of The 50s Ribosomal Subunit gi|37928031|pdb|1Q86|Z Chain Z, Crystal Structure Of Cca-Phe-Cap-Biotin Bound Simultaneously At Half Occupancy To Both The A-Site And P- Site Of The The 50s Ribosomal Subunit. gi|39654696|pdb|1QVF|X Chain X, Structure Of A Deacylated Trna Minihelix Bound To The E Site Of The Large Ribosomal Subunit Of Haloarcula Marismortui gi|39654729|pdb|1QVG|X Chain X, Structure Of Cca Oligonucleotide Bound To The Trna Binding Sites Of The Large Ribosomal Subunit Of Haloarcula Marismortui gi|55670559|pdb|1W2B|X Chain X, Trigger Factor Ribosome Binding Domain In Complex With 50s gi|228311935|pdb|3CXC|X Chain X, The Structure Of An Enhanced Oxazolidinone Inhibitor Bound To The 50s Ribosomal Subunit Of H. Marismortui Length = 240 Score = 48.2 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 555 SPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605 + L +I+G+GP + L ++ F +V+ + + LA + GI +A +I Sbjct: 14 TELTDISGVGPSKAESLREAGFESVEDVRGADQSALADVSGIGNALAARIKA 65 >gi|55378369|ref|YP_136219.1| 50S ribosomal protein L32e [Haloarcula marismortui ATCC 43049] gi|132885|sp|P12736|RL32_HALMA RecName: Full=50S ribosomal protein L32e; AltName: Full=Hl5 gi|50513494|pdb|1S72|Y Chain Y, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution gi|66360808|pdb|1YHQ|Y Chain Y, Crystal Structure Of Azithromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui gi|66360841|pdb|1YI2|Y Chain Y, Crystal Structure Of Erythromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui gi|66360874|pdb|1YIJ|Y Chain Y, Crystal Structure Of Telithromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui gi|66360907|pdb|1YIT|Y Chain Y, Crystal Structure Of Virginiamycin M And S Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui gi|66360940|pdb|1YJ9|Y Chain Y, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui Containing A Three Residue Deletion In L22 gi|66360973|pdb|1YJN|Y Chain Y, Crystal Structure Of Clindamycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui gi|66361006|pdb|1YJW|Y Chain Y, Crystal Structure Of Quinupristin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui gi|83753149|pdb|1VQ4|Y Chain Y, The Structure Of The Transition State Analogue "daa" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|83753181|pdb|1VQ5|Y Chain Y, The Structure Of The Transition State Analogue "raa" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|83753213|pdb|1VQ6|Y Chain Y, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|83753245|pdb|1VQ7|Y Chain Y, The Structure Of The Transition State Analogue "dca" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|83753276|pdb|1VQ8|Y Chain Y, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic Sparsomycin Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|83753308|pdb|1VQ9|Y Chain Y, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic Sparsomycin Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|83753339|pdb|1VQK|Y Chain Y, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of The Ribosomal Subunit Of Haloarcula Marismortui gi|83753370|pdb|1VQL|Y Chain Y, The Structure Of The Transition State Analogue "dcsn" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|83753401|pdb|1VQM|Y Chain Y, The Structure Of The Transition State Analogue "dan" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|83753433|pdb|1VQN|Y Chain Y, The Structure Of Cc-Hpmn And Cca-Phe-Cap-Bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|83753464|pdb|1VQO|Y Chain Y, The Structure Of Ccpmn Bound To The Large Ribosomal Subunit Haloarcula Marismortui gi|83753496|pdb|1VQP|Y Chain Y, The Structure Of The Transition State Analogue "rap" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|145580196|pdb|2OTJ|Y Chain Y, 13-Deoxytedanolide Bound To The Large Subunit Of Haloarcula Marismortui gi|145580227|pdb|2OTL|Y Chain Y, Girodazole Bound To The Large Subunit Of Haloarcula Marismortui gi|171848861|pdb|2QA4|Y Chain Y, A More Complete Structure Of The The L7L12 STALK OF THE Haloarcula Marismortui 50s Large Ribosomal Subunit gi|188596026|pdb|3CC2|Y Chain Y, The Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution With Rrna Sequence For The 23s Rrna And Genome-Derived Sequences For R-Proteins gi|188596057|pdb|3CC4|Y Chain Y, Co-Crystal Structure Of Anisomycin Bound To The 50s Ribosomal Subunit gi|188596088|pdb|3CC7|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation C2487u gi|188596119|pdb|3CCE|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation U2535a gi|188596150|pdb|3CCJ|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation C2534u gi|188596181|pdb|3CCL|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation U2535c. Density For Anisomycin Is Visible But Not Included In Model. gi|188596212|pdb|3CCM|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2611u gi|188596243|pdb|3CCQ|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation A2488u gi|188596274|pdb|3CCR|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation A2488c. Density For Anisomycin Is Visible But Not Included In The Model. gi|188596305|pdb|3CCS|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2482a gi|188596336|pdb|3CCU|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2482c gi|188596367|pdb|3CCV|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2616a gi|188596398|pdb|3CD6|Y Chain Y, Co-Cystal Of Large Ribosomal Subunit Mutant G2616a With Cc- Puromycin gi|194368728|pdb|3CPW|X Chain X, The Structure Of The Antibiotic Linezolid Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|208435518|pdb|2QEX|Y Chain Y, Negamycin Binds To The Wall Of The Nascent Chain Exit Tunnel Of The 50s Ribosomal Subunit gi|290790060|pdb|3I55|Y Chain Y, Co-Crystal Structure Of Mycalamide A Bound To The Large Ribosomal Subunit gi|290790091|pdb|3I56|Y Chain Y, Co-Crystal Structure Of Triacetyloleandomcyin Bound To The Large Ribosomal Subunit gi|48865|emb|CAA41288.1| ribosomal protein [Haloarcula marismortui] gi|55231094|gb|AAV46513.1| 50S ribosomal protein L32E [Haloarcula marismortui ATCC 43049] gi|228188|prf||1718307E ribosomal protein HL5 Length = 241 Score = 48.2 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 555 SPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605 + L +I+G+GP + L ++ F +V+ + + LA + GI +A +I Sbjct: 15 TELTDISGVGPSKAESLREAGFESVEDVRGADQSALADVSGIGNALAARIKA 66 >gi|224003765|ref|XP_002291554.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220973330|gb|EED91661.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 191 Score = 48.2 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 21/40 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 LL FGT K + +S E L+ G+ K ++Y FH+ Sbjct: 149 QLLSQFGTWKNLVGASVEELSVCPGVGVKKVRRLYEAFHR 188 >gi|42561289|ref|NP_975740.1| DNA ligase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|81400468|sp|Q6MSK8|DNLJ_MYCMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|42492787|emb|CAE77382.1| DNA ligase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320499|gb|ADK69142.1| DNA ligase (NAD(+)) [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 668 Score = 48.2 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 23/54 (42%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I IG ++L + + + + +S + L I I + +A I + F + Sbjct: 513 GIRHIGSKTAKILARKYQNIDNLMSASYDELIQINSIGESLALSIIDWFKIEDN 566 >gi|116668758|ref|YP_829691.1| DNA integrity scanning protein DisA [Arthrobacter sp. FB24] gi|116608867|gb|ABK01591.1| protein of unknown function DUF147 [Arthrobacter sp. FB24] Length = 358 Score = 48.2 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 3/59 (5%) Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 R S L + L+ FG ++ + ++ + L +++GI + A + Sbjct: 290 RGYRLLSGLKAVP---KAVADRLVDHFGGLQYLMAATIDDLMTVDGIGDQRARTVREGL 345 >gi|332361975|gb|EGJ39777.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK49] Length = 652 Score = 48.2 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%) Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 AI +K + L I +G R+LL+ F + +S++S E +A+I+ + IA Sbjct: 485 AIQASKKNSAERLLFGL-GIRHVGSKASRILLEKFHDILRLSQASQEEIAAIDSLGTVIA 543 Query: 601 CKIYNHFHKNTSH 613 ++ +F + S Sbjct: 544 QSLHTYFEQEGSQ 556 >gi|325110927|ref|YP_004271995.1| DNA ligase [Planctomyces brasiliensis DSM 5305] gi|324971195|gb|ADY61973.1| DNA ligase [Planctomyces brasiliensis DSM 5305] Length = 675 Score = 48.2 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +G R+L + FG++ + S E LA++ I IA +Y H + Sbjct: 516 NIRHVGTSNARILAERFGSLGQLQEQSAENLAAVNEIGPVIAESVYEFLHSD 567 >gi|116494557|ref|YP_806291.1| NAD-dependent DNA ligase [Lactobacillus casei ATCC 334] gi|122264017|sp|Q03AC3|DNLJ_LACC3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116104707|gb|ABJ69849.1| NAD-dependent DNA ligase [Lactobacillus casei ATCC 334] Length = 674 Score = 48.2 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%) Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 AI R+ + L I +G R+L + FG + + +S E +A + I I Sbjct: 502 AINNSRQNSVERLIFGL-GIRHVGGKAARILAEHFGDLDHLMTASQEAIADVPNIGPTIG 560 Query: 601 CKIYNHFH 608 I +F Sbjct: 561 EAIVTYFK 568 >gi|265753576|ref|ZP_06088931.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_33FAA] gi|263235290|gb|EEZ20814.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_33FAA] Length = 665 Score = 48.2 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 25/45 (55%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + + +SF ++ ++ +S + L ++ I +KIA I +F Sbjct: 515 VGETVAKKVAKSFKSMDALADASLDDLIHVDEIGEKIAQSILLYF 559 >gi|29346304|ref|NP_809807.1| DNA ligase [Bacteroides thetaiotaomicron VPI-5482] gi|253568276|ref|ZP_04845687.1| DNA ligase [Bacteroides sp. 1_1_6] gi|81445157|sp|Q8A9C1|DNLJ_BACTN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|29338199|gb|AAO76001.1| DNA ligase [Bacteroides thetaiotaomicron VPI-5482] gi|251842349|gb|EES70429.1| DNA ligase [Bacteroides sp. 1_1_6] Length = 666 Score = 48.2 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 27/50 (54%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + + +SFG + + ++ E L SI+ I +KIA I +F ++ Sbjct: 516 VGETVAKKIAKSFGDIDELRQADLEKLISIDEIGEKIARSILLYFSNESN 565 >gi|56807990|ref|ZP_00365800.1| COG1555: DNA uptake protein and related DNA-binding proteins [Streptococcus pyogenes M49 591] Length = 163 Score = 48.2 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 8/58 (13%) Query: 551 KAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 KA+ L I GIG R + ++ G K + E L + GI +K K+ + Sbjct: 106 KASLEELQHIPGIGAKRAQDIIDMRDKLGGFKAL-----EDLRQVSGIGEKTLEKLKD 158 >gi|308187689|ref|YP_003931820.1| DNA ligase [Pantoea vagans C9-1] gi|308058199|gb|ADO10371.1| DNA ligase [Pantoea vagans C9-1] Length = 672 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 22/50 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FG ++ + + E L ++ + K +A + N + ++ Sbjct: 520 VGEATAANLANHFGELQKVMDADLEALIAVPDVGKVVAAHVRNFMEEESN 569 >gi|73541575|ref|YP_296095.1| NAD-dependent DNA ligase [Ralstonia eutropha JMP134] gi|123732913|sp|Q470D2|DNLJ_RALEJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|72118988|gb|AAZ61251.1| NAD-dependent DNA ligase [Ralstonia eutropha JMP134] Length = 711 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 3/68 (4%) Query: 541 AITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 AI R + +S I +G + L + FG + + + L + + + Sbjct: 531 AIEASRSTTFNRFIFS--LGIRHVGEATAKDLARHFGKLDGLMVADEAALLEVNDVGPVV 588 Query: 600 ACKIYNHF 607 A I N F Sbjct: 589 AQSIVNFF 596 >gi|329117808|ref|ZP_08246525.1| comEA protein [Streptococcus parauberis NCFD 2020] gi|326908213|gb|EGE55127.1| comEA protein [Streptococcus parauberis NCFD 2020] Length = 225 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 8/59 (13%) Query: 552 AAYSPLDEINGIGPLRKRLLLQ---SFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 A L +I GIG R +++ G K S E L I GI KK K+ ++ Sbjct: 169 ATSDQLTKIPGIGEKRAHEIIEARDKMGGFK-----SLEDLTKISGIGKKTLEKMKDNL 222 >gi|326798931|ref|YP_004316750.1| DNA polymerase I [Sphingobacterium sp. 21] gi|326549695|gb|ADZ78080.1| DNA polymerase I [Sphingobacterium sp. 21] Length = 928 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 12/58 (20%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG-----------ISKKIACKIYN 605 I G+G + L+Q FG+V+ I ++ + L ISKK+A I + Sbjct: 193 GIPGVGEKTAKKLIQDFGSVEGII-ANSDQLKGKLKENIETYAEQGLISKKLATIILD 249 >gi|212693183|ref|ZP_03301311.1| hypothetical protein BACDOR_02690 [Bacteroides dorei DSM 17855] gi|212664288|gb|EEB24860.1| hypothetical protein BACDOR_02690 [Bacteroides dorei DSM 17855] Length = 665 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 25/45 (55%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + + +SF ++ ++ +S + L ++ I +KIA I +F Sbjct: 515 VGETVAKKVAKSFKSMDALADASLDDLIHVDEIGEKIAQSILLYF 559 >gi|171779630|ref|ZP_02920586.1| hypothetical protein STRINF_01467 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281732|gb|EDT47166.1| hypothetical protein STRINF_01467 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 652 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 29/55 (52%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G R LL+ F +++ + + E +A+I+G+ IA + ++F K + Sbjct: 502 GIRHVGAKASRQLLEVFESIENLVAADEEAIANIDGLGTVIAKSLRSYFAKKEAE 556 Score = 44.3 bits (103), Expect = 0.058, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 6/60 (10%) Query: 559 EINGIGPLRKRLL----LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I G+GP + L L V I R S E L +++G +K A K+YN + +++ Sbjct: 436 NITGLGPSIVKKLFTADLVH--DVADIYRLSVEDLLTLDGFKEKSAEKLYNAIQASKANS 493 >gi|187777242|ref|ZP_02993715.1| hypothetical protein CLOSPO_00789 [Clostridium sporogenes ATCC 15579] gi|187774170|gb|EDU37972.1| hypothetical protein CLOSPO_00789 [Clostridium sporogenes ATCC 15579] Length = 744 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN-HFHKNT 611 I+GIGP+ + +++ FG T+ I ++ E L IEGI KK IY+ + +N Sbjct: 88 ISGIGPVTAKKIVKKFGEETL-NILDNNIERLTEIEGIGKKKIEIIYDSYIKQNE 141 >gi|270292770|ref|ZP_06198981.1| DNA ligase, NAD-dependent [Streptococcus sp. M143] gi|270278749|gb|EFA24595.1| DNA ligase, NAD-dependent [Streptococcus sp. M143] Length = 652 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 28/49 (57%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G +LLLQ F +++ ++++ PE +ASIE + IA + F Sbjct: 502 GIRHVGSKASQLLLQHFHSIENLAQADPEEVASIESLGSVIAKSLQTFF 550 >gi|237709923|ref|ZP_04540404.1| DNA ligase [Bacteroides sp. 9_1_42FAA] gi|229456016|gb|EEO61737.1| DNA ligase [Bacteroides sp. 9_1_42FAA] Length = 665 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 25/45 (55%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + + +SF ++ ++ +S + L ++ I +KIA I +F Sbjct: 515 VGETVAKKVAKSFKSMDALADASLDDLIHVDEIGEKIAQSILLYF 559 >gi|322376748|ref|ZP_08051241.1| DNA ligase, NAD-dependent [Streptococcus sp. M334] gi|321282555|gb|EFX59562.1| DNA ligase, NAD-dependent [Streptococcus sp. M334] Length = 652 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 30/55 (54%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G +LLLQ F +++ ++++ PE +ASIE + IA + +F S Sbjct: 502 GIRHVGSKASQLLLQHFHSIENLAQADPEEVASIESLGGVIAKSLQTYFATEGSE 556 >gi|307708748|ref|ZP_07645210.1| DNA ligase, NAD-dependent [Streptococcus mitis NCTC 12261] gi|307615114|gb|EFN94325.1| DNA ligase, NAD-dependent [Streptococcus mitis NCTC 12261] Length = 652 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 30/55 (54%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G +LLLQ F +++ ++++ PE +ASIE + IA + +F S Sbjct: 502 GIRHVGSKASQLLLQHFHSIENLAQADPEEVASIESLGGVIAKSLQTYFATEGSE 556 >gi|303254175|ref|ZP_07340287.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae BS455] gi|302598846|gb|EFL65880.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae BS455] Length = 652 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 30/55 (54%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G +LLLQ F +++ ++++ PE +ASIE + IA + +F S Sbjct: 502 GIRHVGSKASQLLLQHFHSIENLAQADPEEVASIESLGGVIAKSLQTYFATEGSE 556 >gi|289168011|ref|YP_003446280.1| DNA ligase [Streptococcus mitis B6] gi|288907578|emb|CBJ22415.1| DNA ligase [Streptococcus mitis B6] Length = 652 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 30/55 (54%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G +LLLQ F +++ ++++ PE +ASIE + IA + +F S Sbjct: 502 GIRHVGSKASQLLLQHFHSIENLAQADPEEVASIESLGGVIAKSLQTYFATEGSE 556 >gi|326328756|ref|ZP_08195092.1| putative DNA-binding protein [Nocardioidaceae bacterium Broad-1] gi|325953378|gb|EGD45382.1| putative DNA-binding protein [Nocardioidaceae bacterium Broad-1] Length = 360 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 22/45 (48%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 L+ FGT++ + +S + L ++EG+ + A + + T Sbjct: 310 RLVDHFGTLQKLLSASVDDLQAVEGVGELRARSVREGLSRLAEST 354 >gi|296088298|emb|CBI36743.3| unnamed protein product [Vitis vinifera] Length = 398 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 21/35 (60%) Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 FG++ I +S E LA GI ++ ++Y+ FH+ Sbjct: 264 FGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 298 >gi|271501855|ref|YP_003334881.1| DNA ligase [Dickeya dadantii Ech586] gi|270345410|gb|ACZ78175.1| DNA ligase, NAD-dependent [Dickeya dadantii Ech586] Length = 683 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 14/76 (18%) Query: 548 RRKKAAYSPLDE--------------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 + + S LD+ I +G L FGT+ + + E L + Sbjct: 502 KSAQNLVSALDKAKSTTFARFLYALGIRDVGEATAANLASHFGTLDALQAADLEALQQVP 561 Query: 594 GISKKIACKIYNHFHK 609 + +A + + + Sbjct: 562 DVGIVVATHVRHFLDE 577 >gi|256847801|ref|ZP_05553246.1| DNA ligase, NAD-dependent [Lactobacillus coleohominis 101-4-CHN] gi|256715490|gb|EEU30466.1| DNA ligase, NAD-dependent [Lactobacillus coleohominis 101-4-CHN] Length = 674 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G RL+ + FG++ + ++S E +A+++ I I + +F Sbjct: 518 GIRHVGAKVARLIAEKFGSLDAVMKASAEDIAAVDTIGPTIGDSVATYF 566 >gi|262369277|ref|ZP_06062605.1| DNA ligase [Acinetobacter johnsonii SH046] gi|262315345|gb|EEY96384.1| DNA ligase [Acinetobacter johnsonii SH046] Length = 679 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 20/50 (40%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I G+G R+L +F T+ + + + L + A I + F Sbjct: 522 GIRGVGETTARMLANTFQTLDALRVADIDALKKTPDVGDITAEWIVDFFQ 571 >gi|229545130|ref|ZP_04433855.1| competence protein comEA [Enterococcus faecalis TX1322] gi|229309675|gb|EEN75662.1| competence protein comEA [Enterococcus faecalis TX1322] gi|315144857|gb|EFT88873.1| comEA protein [Enterococcus faecalis TX2141] Length = 225 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 14/63 (22%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIY 604 +A + L I+GIG + + +++ F + E L ++ GI +K ++ Sbjct: 167 RATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLK 218 Query: 605 NHF 607 + Sbjct: 219 DML 221 >gi|224373470|ref|YP_002607842.1| DNA polymerase X family/PHP domain protein [Nautilia profundicola AmH] gi|223589333|gb|ACM93069.1| DNA polymerase X family/PHP domain protein [Nautilia profundicola AmH] Length = 546 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%) Query: 556 PLDEINGIGPLRKRLLLQSFG--TVKMISR-SSPETLASIEGISKKIACKIYN 605 L I G+GP R + L ++FG + + + + L + G K+ KI Sbjct: 94 ELLSIEGLGPKRVKQLYETFGIKNMDDLKKYAYSGELDKLPGFGPKLIEKILK 146 >gi|194335563|ref|YP_002017357.1| DNA protecting protein DprA [Pelodictyon phaeoclathratiforme BU-1] gi|194308040|gb|ACF42740.1| DNA protecting protein DprA [Pelodictyon phaeoclathratiforme BU-1] Length = 383 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 1/54 (1%) Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNHFH 608 L I GIGP R + + + + L + GI + +A ++++ H Sbjct: 15 ALTLIPGIGPARIKAITTFLHNRLADVLHCDVGELIQVSGIGESLARQMHHFLH 68 >gi|324523831|gb|ADY48308.1| DNA excision repair protein ERCC-1 [Ascaris suum] Length = 226 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 20/40 (50%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 + L+ +FG++ I+ + E L+ G+ A I+ F Sbjct: 181 QRLIGTFGSIAAIANADVERLSLCPGLGPVKAENIFMFFR 220 >gi|319652078|ref|ZP_08006198.1| hypothetical protein HMPREF1013_02810 [Bacillus sp. 2_A_57_CT2] gi|317396226|gb|EFV76944.1| hypothetical protein HMPREF1013_02810 [Bacillus sp. 2_A_57_CT2] Length = 126 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 2/73 (2%) Query: 14 QMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLE 73 D +L+VGKA L++R+K + N + I I +E + E Sbjct: 50 LFFDANEDLLFVGKARKLRQRVKKHFEDNVSPIKNHR--DDIYKIAVIYVEDSMEREIYE 107 Query: 74 ANMIKRLKPRFNI 86 +I L +FNI Sbjct: 108 TYIINTLHAKFNI 120 >gi|88604173|ref|YP_504351.1| DNA repair and recombination protein RadA [Methanospirillum hungatei JF-1] gi|88189635|gb|ABD42632.1| DNA repair and recombination protein RadA [Methanospirillum hungatei JF-1] Length = 407 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACK 602 L++I G+GP L ++ + +V+ I++++ L I + A K Sbjct: 7 KLEDIPGVGPTTAEKLREAGYESVEKIAQATATELYDTAEIGEATARK 54 >gi|238765534|ref|ZP_04626449.1| DNA ligase [Yersinia kristensenii ATCC 33638] gi|238696249|gb|EEP89051.1| DNA ligase [Yersinia kristensenii ATCC 33638] Length = 670 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 18/48 (37%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +G L F + + + E L S+ + + +A + N + Sbjct: 520 VGEATAANLAAHFRNLTNLRAADIEALKSVPDVGEIVAKHVLNFLGEE 567 >gi|228921793|ref|ZP_04085109.1| hypothetical protein bthur0011_27890 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837875|gb|EEM83200.1| hypothetical protein bthur0011_27890 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 213 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 52/105 (49%), Gaps = 20/105 (19%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 + G+Y + D ++Y+GKA++++ R+ ++ +S ++ I + N + + + + Sbjct: 19 DDSGIYFIRDYNDNIIYIGKAFSIKSRVLAHFNSYSN---IKEYVHLFNKVAYLIEDS-- 73 Query: 68 EALLLEANMIK-----RLKPRFNILLRDDKSFP-----YILITDK 102 LL+ ++++ + KP N + K FP YI T+K Sbjct: 74 ---LLKRSLLQVTYMIKYKPVLNKEV--QKEFPELYTQYIKQTNK 113 >gi|297829042|ref|XP_002882403.1| hypothetical protein ARALYDRAFT_477808 [Arabidopsis lyrata subsp. lyrata] gi|297328243|gb|EFH58662.1| hypothetical protein ARALYDRAFT_477808 [Arabidopsis lyrata subsp. lyrata] Length = 407 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 21/35 (60%) Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 FG++ I +S E LA GI ++ ++Y+ FH+ Sbjct: 281 FGSLAHIIDASMEDLARCPGIGERKVRRLYDTFHE 315 >gi|168483024|ref|ZP_02707976.1| competence protein CelA [Streptococcus pneumoniae CDC1873-00] gi|172043553|gb|EDT51599.1| competence protein CelA [Streptococcus pneumoniae CDC1873-00] gi|332201420|gb|EGJ15490.1| comEA family protein [Streptococcus pneumoniae GA47368] Length = 216 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605 KA+ L ++ G+G R + ++ + S + L + GI K K+ + Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDY-------REANGKFKSVDELKKVSGIGAKTIEKLKD 211 Query: 606 H 606 + Sbjct: 212 Y 212 >gi|302823991|ref|XP_002993643.1| hypothetical protein SELMODRAFT_137345 [Selaginella moellendorffii] gi|300138571|gb|EFJ05335.1| hypothetical protein SELMODRAFT_137345 [Selaginella moellendorffii] Length = 209 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 S L + I L +FG++ + +S E LA GI ++ ++++ FH+ Sbjct: 128 RLTSALTSVRHINKTDVVTLGSTFGSMASVMSASMEDLARCPGIGERKVKRLHDAFHE 185 >gi|331084378|ref|ZP_08333482.1| hypothetical protein HMPREF0992_02406 [Lachnospiraceae bacterium 6_1_63FAA] gi|330401642|gb|EGG81223.1| hypothetical protein HMPREF0992_02406 [Lachnospiraceae bacterium 6_1_63FAA] Length = 200 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 8/59 (13%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 A + L EI G+G + + +++ G + I E L + GI K K+ ++ Sbjct: 144 ADLTELQEIPGVGEKKAQSIMEYREACGGFQNI-----EQLQEVPGIKGKTFDKVKDYI 197 >gi|327399096|ref|YP_004339965.1| DNA ligase [Hippea maritima DSM 10411] gi|327181725|gb|AEA33906.1| DNA ligase [Hippea maritima DSM 10411] Length = 667 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 29/51 (56%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G +LL + F ++ + +++ + L +I+GI ++IA + + F + Sbjct: 518 GIRHVGEFVAKLLAERFKNLENLKKATKDELLAIDGIGEEIADSVVSFFSE 568 >gi|322375289|ref|ZP_08049802.1| DNA ligase, NAD-dependent [Streptococcus sp. C300] gi|321279552|gb|EFX56592.1| DNA ligase, NAD-dependent [Streptococcus sp. C300] Length = 652 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 29/49 (59%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G +LLLQ F +++ ++++ PE +ASIE + IA + +F Sbjct: 502 GIRHVGSKASQLLLQHFHSIENLAQADPEEVASIESLGGVIAQSLQTYF 550 >gi|260590121|ref|ZP_05856034.1| competence protein CelA [Blautia hansenii DSM 20583] gi|260539633|gb|EEX20202.1| competence protein CelA [Blautia hansenii DSM 20583] Length = 201 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 8/59 (13%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 A + L EI G+G + + +++ G + I E L + GI K K+ ++ Sbjct: 145 ADLTELQEIPGVGEKKAQSIMEYREACGGFQNI-----EQLQEVPGIKGKTFDKVKDYI 198 >gi|206890248|ref|YP_002249789.1| DNA ligase, NAD-dependent [Thermodesulfovibrio yellowstonii DSM 11347] gi|254781443|sp|B5YIF8|DNLJ_THEYD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|206742186|gb|ACI21243.1| DNA ligase, NAD-dependent [Thermodesulfovibrio yellowstonii DSM 11347] Length = 670 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 3/69 (4%) Query: 547 KRRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 + KK S L I+ +G +LL Q F ++ + E L I I +K A I Sbjct: 503 AKSKKTTLSRLLYALGISQVGEYASKLLAQHFRKLEDLYHIKAEKLVQIPQIGEKTAKTI 562 Query: 604 YNHFHKNTS 612 F+ + Sbjct: 563 EQFFNNEEN 571 >gi|147676621|ref|YP_001210836.1| DNA integrity scanning protein DisA [Pelotomaculum thermopropionicum SI] gi|146272718|dbj|BAF58467.1| predicted nucleic acid-binding protein [Pelotomaculum thermopropionicum SI] Length = 358 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 10/59 (16%) Query: 556 PLDEINGIGPLR-----KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L++I R L+++FGT+ I ++ E L +EGI + A I ++ Sbjct: 294 ILEKIP-----RLPLPVIDNLVKTFGTLNRILVATIEELDDVEGIGEVRARSIKEGLNR 347 >gi|15229933|ref|NP_187172.1| ERCC1; 5'-flap endonuclease [Arabidopsis thaliana] gi|55976606|sp|Q9MA98|ERCC1_ARATH RecName: Full=DNA excision repair protein ERCC-1; Short=AtERCC1; Short=AtRAD10; AltName: Full=Ultraviolet hypersensitive 7 gi|6729031|gb|AAF27027.1|AC009177_17 putative nucleotide repair protein [Arabidopsis thaliana] gi|9800490|gb|AAF99316.1|AF276082_1 ERCC1 [Arabidopsis thaliana] gi|15215614|gb|AAK91352.1| AT3g05210/T12H1_18 [Arabidopsis thaliana] gi|21435979|gb|AAM51569.1| AT3g05210/T12H1_18 [Arabidopsis thaliana] gi|21618171|gb|AAM67221.1| putative nucleotide repair protein [Arabidopsis thaliana] gi|332640684|gb|AEE74205.1| DNA excision repair protein ERCC-1 [Arabidopsis thaliana] Length = 410 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 21/35 (60%) Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 FG++ I +S E LA GI ++ ++Y+ FH+ Sbjct: 282 FGSLAHIIDASMEDLARCPGIGERKVKRLYDTFHE 316 >gi|255595065|ref|XP_002536222.1| DNA ligase, NAD-dependent, putative [Ricinus communis] gi|223520412|gb|EEF26161.1| DNA ligase, NAD-dependent, putative [Ricinus communis] Length = 491 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 21/56 (37%), Gaps = 1/56 (1%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + + F + ++ + L ++E + A + F +N + Sbjct: 341 GIPNVGENSAKNFARHFLSFAAFKAATADELQALEDVGPTTAASVRAFF-ENADNA 395 >gi|271965050|ref|YP_003339246.1| DNA ligase (NAD(+)) [Streptosporangium roseum DSM 43021] gi|270508225|gb|ACZ86503.1| DNA ligase (NAD(+)) [Streptosporangium roseum DSM 43021] Length = 696 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 21/42 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 + G G R + + FG++ I + E + ++EGI K A Sbjct: 523 GVRGTGRSMSRRIARHFGSMDAIRAADAEAIEAVEGIGPKKA 564 >gi|16329180|ref|NP_439908.1| NAD-dependent DNA ligase LigA [Synechocystis sp. PCC 6803] gi|7674015|sp|P72588|DNLJ_SYNY3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|1651660|dbj|BAA16588.1| DNA ligase [Synechocystis sp. PCC 6803] Length = 669 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 27/51 (52%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G + +LL Q F TV+ +S++S L + GI +IA + N F Sbjct: 514 GIRHVGQVNAKLLSQQFPTVEKLSQASIPDLEGVYGIGPEIAEAVVNWFRN 564 >gi|222094064|ref|YP_002528121.1| nad-dependent DNA ligase liga [Bacillus cereus Q1] gi|221238119|gb|ACM10829.1| DNA ligase, NAD-dependent [Bacillus cereus Q1] Length = 615 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 458 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVAYFDNED 510 >gi|304436463|ref|ZP_07396437.1| RecD/TraA family helicase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370509|gb|EFM24160.1| RecD/TraA family helicase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 723 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 4/55 (7%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI-YNHFHKNT 611 I GIGP R +++ FG T+K+I +P L + GI K A KI ++ ++ Sbjct: 102 IEGIGPAMARRIVERFGTDTLKVIES-TPRRLTEVTGIGPKTAEKITASYLRQSE 155 >gi|311743339|ref|ZP_07717146.1| DNA integrity scanning protein [Aeromicrobium marinum DSM 15272] gi|311313407|gb|EFQ83317.1| DNA integrity scanning protein [Aeromicrobium marinum DSM 15272] Length = 364 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 19/38 (50%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L+ FG+++ + +S + L ++EG+ A + Sbjct: 314 RLIDHFGSLQKLLAASLDDLQAVEGVGDLRARGVREGL 351 >gi|170587814|ref|XP_001898669.1| Helix-hairpin-helix motif family protein [Brugia malayi] gi|158593939|gb|EDP32533.1| Helix-hairpin-helix motif family protein [Brugia malayi] Length = 108 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 21/42 (50%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 + L+ +FG+++ I+ + + L G+ A I+ F + Sbjct: 63 QRLIATFGSIRKIANADIDRLLLCPGLGPTKAGNIHAFFRSS 104 >gi|77165170|ref|YP_343695.1| DNA ligase (NAD+) [Nitrosococcus oceani ATCC 19707] gi|254433594|ref|ZP_05047102.1| DNA ligase, NAD-dependent [Nitrosococcus oceani AFC27] gi|123730661|sp|Q3JAI1|DNLJ_NITOC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|76883484|gb|ABA58165.1| DNA ligase (NAD+) [Nitrosococcus oceani ATCC 19707] gi|207089927|gb|EDZ67198.1| DNA ligase, NAD-dependent [Nitrosococcus oceani AFC27] Length = 675 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 23/47 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G ++L + FG+++ ++ S E L + I +A I F + Sbjct: 522 VGEATAQVLAKEFGSLEALASVSEERLQQVTDIGPIVAAHIAAFFRQ 568 >gi|47569950|ref|ZP_00240615.1| DNA ligase, NAD-dependent [Bacillus cereus G9241] gi|47553396|gb|EAL11782.1| DNA ligase, NAD-dependent [Bacillus cereus G9241] Length = 615 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 458 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVAYFDNED 510 >gi|114563631|ref|YP_751144.1| DNA ligase, NAD-dependent [Shewanella frigidimarina NCIMB 400] gi|122299383|sp|Q080K9|DNLJ_SHEFN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|114334924|gb|ABI72306.1| DNA ligase, NAD-dependent [Shewanella frigidimarina NCIMB 400] Length = 670 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 17/45 (37%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G L Q F + I +S E L + + +A I F Sbjct: 519 VGEATAANLAQHFTEFERIRTASVEQLLEVADVGDIVAKHIRQFF 563 >gi|41615176|ref|NP_963674.1| Hef nuclease [Nanoarchaeum equitans Kin4-M] gi|40068900|gb|AAR39235.1| NEQ387 [Nanoarchaeum equitans Kin4-M] Length = 667 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 L GIG LL+ + T+K + +S L+ I G +K A K+ K Sbjct: 613 VLASFPGIGEKSAEELLKRYKTIKNVVNASLSGLSIILG--EKRAKKLKEFLEKE 665 >gi|56962859|ref|YP_174586.1| NAD-dependent DNA ligase LigA [Bacillus clausii KSM-K16] gi|81366743|sp|Q5WJ30|DNLJ_BACSK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|56909098|dbj|BAD63625.1| DNA ligase [Bacillus clausii KSM-K16] Length = 671 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 25/47 (53%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G + L F T++ + ++ E L ++ I +K+A I ++F K Sbjct: 515 VGAKAAKTLAYEFETMERLQEATFEQLLAVNEIGEKMADSIVSYFQK 561 >gi|332184463|gb|AEE26717.1| DNA ligase [Francisella cf. novicida 3523] Length = 678 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 22/52 (42%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I IG + L FG+++ + E L I I + +A I + + + Sbjct: 526 GIKDIGEVSSEALANHFGSLESFREAKFEQLIEINDIGEIMANNIVSFWQDS 577 >gi|296046585|gb|ADG86434.1| NAD-dependent DNA ligase [Francisella novicida] Length = 670 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 17/45 (37%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G L Q F + I +S E L + + +A I F Sbjct: 519 VGEATAANLAQHFAEFERIRTASVEQLLEVADVGDIVAKHIRQFF 563 >gi|82617212|emb|CAI64118.1| DNA repair and recombination protein [uncultured archaeon] gi|268322944|emb|CBH36532.1| DNA repair and recombination protein radA [uncultured archaeon] Length = 315 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 LDE+ G+GP L ++ F +++ I+ +SP L + I + A KI + Sbjct: 3 LDELPGVGPAIAEKLREAGFNSLEAIAVASPMELVATTEIGEATASKIITAAREAAD 59 >gi|325105539|ref|YP_004275193.1| DNA polymerase I [Pedobacter saltans DSM 12145] gi|324974387|gb|ADY53371.1| DNA polymerase I [Pedobacter saltans DSM 12145] Length = 931 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 15/67 (22%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLA-----SIE-----GI-SKKIACKIYNH- 606 I GIG + L++ FG+V+ I ++ + L ++E GI SK++A + + Sbjct: 194 GIPGIGEKTAKALVKQFGSVEQII-ANSDQLKGKQRENVENFADQGILSKRLATILLDAP 252 Query: 607 --FHKNT 611 FH+ Sbjct: 253 VEFHEED 259 >gi|296134038|ref|YP_003641285.1| DNA repair protein RadC [Thermincola sp. JR] gi|296032616|gb|ADG83384.1| DNA repair protein RadC [Thermincola potens JR] Length = 231 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 21/38 (55%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 LL +FG +K + +S E ++SI+GI A ++ Sbjct: 56 QLLSAFGGLKELVGASVEEISSIKGIGLAKATQVKAAL 93 >gi|311030722|ref|ZP_07708812.1| YqxK [Bacillus sp. m3-13] Length = 388 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 3/52 (5%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMIS-RSSPETLASIEGISKKIACKIYNH 606 PLD I G+GP L FGT I +S E L + G +KIA I Sbjct: 318 PLDFIPGVGPKTLMKLRGVFGTEMGILHEASQEELVEVVG--EKIASLIVAA 367 >gi|220915846|ref|YP_002491150.1| DNA ligase, NAD-dependent [Anaeromyxobacter dehalogenans 2CP-1] gi|254781252|sp|B8JD56|DNLJ_ANAD2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|219953700|gb|ACL64084.1| DNA ligase, NAD-dependent [Anaeromyxobacter dehalogenans 2CP-1] Length = 687 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 2/60 (3%) Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 RK L I +G L + FG + + + E L + + + A +I Sbjct: 524 RKTTLRRFLFALGIPQVGEATAATLARHFGDLARVMDADEEALKGVRDVGPETAAEIRAW 583 >gi|297623876|ref|YP_003705310.1| DNA protecting protein DprA [Truepera radiovictrix DSM 17093] gi|297165056|gb|ADI14767.1| DNA protecting protein DprA [Truepera radiovictrix DSM 17093] Length = 372 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Query: 555 SPLDEI---NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 SPL + G+GP + + LL+ FG ++ +S L +EG+ K+A I Sbjct: 6 SPLLALAFTPGLGPRKLKALLEHFGDAASLADASAGALREVEGVGPKLAQTIVAF 60 >gi|289577826|ref|YP_003476453.1| DNA ligase, NAD-dependent [Thermoanaerobacter italicus Ab9] gi|289527539|gb|ADD01891.1| DNA ligase, NAD-dependent [Thermoanaerobacter italicus Ab9] Length = 662 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 23/50 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 IG +++ + F T+ I ++ E + + K+A I + F + + Sbjct: 511 IGSKAAQVIAEHFKTMDDIMKAKFEDFTKLPDVGPKMARSIVSFFAEKQN 560 >gi|288554698|ref|YP_003426633.1| DNA integrity scanning protein DisA [Bacillus pseudofirmus OF4] gi|288545858|gb|ADC49741.1| DNA integrity scanning protein DisA [Bacillus pseudofirmus OF4] Length = 357 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 23/54 (42%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L I + P L+ +G + I +S E L +EGI + A I + + Sbjct: 293 ILHRIPRLPPAIINNLIDKYGNLSSIMFASIEELDEVEGIGEARAKMIKDGLQR 346 >gi|229137131|ref|ZP_04265750.1| DNA ligase [Bacillus cereus BDRD-ST26] gi|228646303|gb|EEL02518.1| DNA ligase [Bacillus cereus BDRD-ST26] Length = 589 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 432 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVAYFDNED 484 >gi|295836378|ref|ZP_06823311.1| DNA ligase, NAD-dependent [Streptomyces sp. SPB74] gi|295825992|gb|EDY45591.2| DNA ligase, NAD-dependent [Streptomyces sp. SPB74] Length = 818 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 17/81 (20%) Query: 550 KKAAYSPLDEIN------------G-----IGPLRKRLLLQSFGTVKMISRSSPETLASI 592 KK A S L+ I G +GP+ L + F ++ I + LA Sbjct: 574 KKNALSMLENIEAAKQRPLAQILTGLSIRHVGPVAAAALAREFRSIDRIFAAEENELAET 633 Query: 593 EGISKKIACKIYNHFHKNTSH 613 EG+ IA + + + Sbjct: 634 EGVGPTIAASLKQWYDAEEND 654 >gi|309389839|gb|ADO77719.1| DNA ligase, NAD-dependent [Halanaerobium praevalens DSM 2228] Length = 670 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 GIG R L ++F ++ + + + L +I I IA I N F + Sbjct: 519 GIGAARI--LAENFNSIDELKSAKIDDLKNISEIGPVIADSIVNFFQE 564 >gi|322804437|emb|CBZ01987.1| recd-like DNA helicase YrrC [Clostridium botulinum H04402 065] Length = 744 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%) Query: 560 INGIGPLRKRLLLQSFGTVK-MISRSSPETLASIEGISKKIACKIYN-HFHKNT 611 I+GIGP+ + +++ FG I ++ E L IEGI KK IY+ + +N Sbjct: 88 ISGIGPVTAKKIVKKFGEATLNILDNNIERLTEIEGIGKKKIEVIYDSYIKQNE 141 >gi|228983547|ref|ZP_04143752.1| DNA ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228776143|gb|EEM24504.1| DNA ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 669 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKEINEIGEKMAQSVVAYFDNED 564 >gi|229154059|ref|ZP_04282184.1| DNA ligase [Bacillus cereus ATCC 4342] gi|228629339|gb|EEK86041.1| DNA ligase [Bacillus cereus ATCC 4342] Length = 669 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKEINEIGEKMAQSVVAYFDNED 564 >gi|326803914|ref|YP_004321732.1| putative ComE operon protein 1 [Aerococcus urinae ACS-120-V-Col10a] gi|326650576|gb|AEA00759.1| putative ComE operon protein 1 [Aerococcus urinae ACS-120-V-Col10a] Length = 248 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 8/57 (14%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYN 605 A S L EI+GIG + ++Q G+ + + E + + GI K KI Sbjct: 192 ADASQLQEISGIGEKKAADIIQYRESEGSFQ-----TIEEITEVSGIGDKTFEKIKE 243 >gi|238759468|ref|ZP_04620632.1| DNA ligase [Yersinia aldovae ATCC 35236] gi|238702365|gb|EEP94918.1| DNA ligase [Yersinia aldovae ATCC 35236] Length = 670 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 7/48 (14%), Positives = 20/48 (41%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +G L F + + + + L S++ + + +A + N ++ Sbjct: 520 VGEATAANLAAHFRNLANLRAADIDALKSVQDVGEVVAKHVMNFLNEE 567 >gi|255029497|ref|ZP_05301448.1| hypothetical protein LmonL_11153 [Listeria monocytogenes LO28] Length = 32 Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 12/22 (54%), Positives = 16/22 (72%) Query: 57 NIRFTVTCTEVEALLLEANMIK 78 + + VT + VEALLLE N+IK Sbjct: 2 DFEYIVTSSNVEALLLEINLIK 23 >gi|219850727|ref|YP_002465159.1| DNA repair and recombination protein RadA [Methanosphaerula palustris E1-9c] gi|219544986|gb|ACL15436.1| DNA repair and recombination protein RadA [Methanosphaerula palustris E1-9c] Length = 327 Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606 ++++ G+GP L + F TV+ I+ +SP LA I + A KI Sbjct: 7 EIEDLPGVGPTTAEKLRDAGFLTVESIATASPTELAEAAEIGEASAKKIIKA 58 >gi|195381327|ref|XP_002049404.1| GJ20764 [Drosophila virilis] gi|194144201|gb|EDW60597.1| GJ20764 [Drosophila virilis] Length = 256 Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 26/54 (48%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L I + +LQ FG ++ + +S E LA + G+ + A K+Y H+ Sbjct: 198 ALTNIKPVNKTDAVTILQIFGNLENLINASEERLAQVMGLGPRKAKKLYKTLHE 251 >gi|153871900|ref|ZP_02000951.1| DNA-directed DNA polymerase [Beggiatoa sp. PS] gi|152071634|gb|EDN69049.1| DNA-directed DNA polymerase [Beggiatoa sp. PS] Length = 914 Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 10/53 (18%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 D I G IGP LL+++G+++ I + +I I K+A + Sbjct: 185 DNIPGVKTIGPKTAIKLLKNYGSLEAI-------IENIPQIKGKVADNLREAL 230 >gi|260063119|ref|YP_003196199.1| DNA ligase [Robiginitalea biformata HTCC2501] gi|88784688|gb|EAR15858.1| DNA ligase [Robiginitalea biformata HTCC2501] Length = 673 Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 22/45 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + L +++ + + +S + L ++ I ++IA + F Sbjct: 522 VGETVAKKLARAYKNIDALMAASADELQQVDEIGQRIAGSVVEFF 566 >gi|315127017|ref|YP_004069020.1| NAD-dependent DNA ligase [Pseudoalteromonas sp. SM9913] gi|315015531|gb|ADT68869.1| NAD-dependent DNA ligase [Pseudoalteromonas sp. SM9913] Length = 673 Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 14/77 (18%) Query: 548 RRKKAAYSPLDE--------------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 + K + LD+ I +G + L F T++ + +S E L + Sbjct: 492 KSAKNLVAALDDAKTTTLAKFLYSLGIREVGEATAQNLANHFLTLENVIDASIEQLIEVS 551 Query: 594 GISKKIACKIYNHFHKN 610 + + +A + F + Sbjct: 552 DVGEIVAKHVRGFFTEE 568 >gi|153939064|ref|YP_001389532.1| RecD/TraA family helicase [Clostridium botulinum F str. Langeland] gi|152934960|gb|ABS40458.1| helicase, RecD/TraA family [Clostridium botulinum F str. Langeland] Length = 744 Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN-HFHKNT 611 I+GIGP+ + +++ FG T+ I ++ E L IEGI KK IY+ + +N Sbjct: 88 ISGIGPVTAKKIVKKFGEETL-NILDNNIERLTEIEGIGKKKIEIIYDSYIKQNE 141 >gi|332306125|ref|YP_004433976.1| DNA ligase, NAD-dependent [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173454|gb|AEE22708.1| DNA ligase, NAD-dependent [Glaciecola agarilytica 4H-3-7+YE-5] Length = 677 Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 6/67 (8%) Query: 550 KKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 K+ + L I +G + L F T+ I ++ + L ++ + +A + Sbjct: 506 GKSKKTTLAKFLYSLGIREVGEATAQNLALHFLTLDAIEQADLDALQAVSDVGIIVAQHV 565 Query: 604 YNHFHKN 610 N F + Sbjct: 566 VNFFKEE 572 >gi|170755250|ref|YP_001779796.1| RecD/TraA family helicase [Clostridium botulinum B1 str. Okra] gi|169120462|gb|ACA44298.1| helicase, RecD/TraA family [Clostridium botulinum B1 str. Okra] Length = 744 Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN-HFHKNT 611 I+GIGP+ + +++ FG T+ I ++ E L IEGI KK IY+ + +N Sbjct: 88 ISGIGPVTAKKIVKKFGEETL-NILDNNIERLTEIEGIGKKKIEIIYDSYIKQNE 141 >gi|323485704|ref|ZP_08091041.1| hypothetical protein HMPREF9474_02792 [Clostridium symbiosum WAL-14163] gi|323400967|gb|EGA93328.1| hypothetical protein HMPREF9474_02792 [Clostridium symbiosum WAL-14163] Length = 663 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 7/71 (9%) Query: 550 KKAAYSPL------DEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACK 602 KKA+ + L I+GIG ++L + F + ++ E L +++GI +A Sbjct: 489 KKASETTLPRVVYSLGISGIGLANAKMLCRRFKNDFAAMRKAKKEELVAVDGIGDVLADA 548 Query: 603 IYNHFHKNTSH 613 + F ++ Sbjct: 549 WIDFFSSEKNN 559 >gi|319655032|ref|ZP_08009103.1| DNA ligase [Bacillus sp. 2_A_57_CT2] gi|317393299|gb|EFV74066.1| DNA ligase [Bacillus sp. 2_A_57_CT2] Length = 668 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 29/55 (52%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G + L Q FG ++ + ++S + L +I I +K+A I + F + +H Sbjct: 511 GIRHVGAKAAKTLAQEFGHMEALEKASRDNLTAINEIGEKMADSIVSFFDQEEAH 565 >gi|288918322|ref|ZP_06412675.1| protein of unknown function DUF147 [Frankia sp. EUN1f] gi|288350217|gb|EFC84441.1| protein of unknown function DUF147 [Frankia sp. EUN1f] Length = 359 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 19/38 (50%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L+ FGT++ + + + L ++EG+ + A + Sbjct: 309 RLVDHFGTLQKLLAAGVDDLQAVEGVGEARARAVREGL 346 >gi|253574669|ref|ZP_04852009.1| competence protein ComEA helix-hairpin-helix repeat protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251845715|gb|EES73723.1| competence protein ComEA helix-hairpin-helix repeat protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 170 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 12/52 (23%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACK 602 L EI GIG + + +L + S E L ++GI K+ K Sbjct: 119 ELQEIPGIGEKKAKAILDY-------RNAHGPFTSIEALTEVKGIGDKMLEK 163 Score = 39.3 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 9/26 (34%), Positives = 14/26 (53%) Query: 581 ISRSSPETLASIEGISKKIACKIYNH 606 I+R+ L I GI +K A I ++ Sbjct: 112 INRAGLAELQEIPGIGEKKAKAILDY 137 >gi|168177501|ref|ZP_02612165.1| helicase, RecD/TraA family [Clostridium botulinum NCTC 2916] gi|182671377|gb|EDT83351.1| helicase, RecD/TraA family [Clostridium botulinum NCTC 2916] Length = 744 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN-HFHKNT 611 I+GIGP+ + +++ FG T+ I ++ E L IEGI KK IY+ + +N Sbjct: 88 ISGIGPVTAKKIVKKFGEETL-NILDNNIERLTEIEGIGKKKIEIIYDSYIKQNE 141 >gi|15805160|ref|NP_293846.1| smf protein [Deinococcus radiodurans R1] gi|6457785|gb|AAF09710.1|AE001874_7 smf protein [Deinococcus radiodurans R1] Length = 370 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI-SKKIA 600 G+GP R L + FG+ + + L +EG+ S+ +A Sbjct: 23 PGLGPRRIENLRRHFGSAEAALAAPLTELRRVEGLDSRSVA 63 >gi|282856148|ref|ZP_06265431.1| DNA ligase (NAD(+)) [Pyramidobacter piscolens W5455] gi|282585907|gb|EFB91192.1| DNA ligase (NAD(+)) [Pyramidobacter piscolens W5455] Length = 681 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 10/83 (12%) Query: 528 YFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 +Q AI ++R K + L I +G L + F ++ I+ + E Sbjct: 495 KLLQ---------AIAKSKERPLKFLITAL-GIREVGAGVAAELAKRFSSLDEIAAADEE 544 Query: 588 TLASIEGISKKIACKIYNHFHKN 610 LA++EG+ IA I F + Sbjct: 545 RLAAVEGVGPVIAGSIKTFFGEE 567 >gi|228989291|ref|ZP_04149283.1| DNA integrity scanning protein disA [Bacillus pseudomycoides DSM 12442] gi|228995474|ref|ZP_04155143.1| DNA integrity scanning protein disA [Bacillus mycoides Rock3-17] gi|229003097|ref|ZP_04160948.1| DNA integrity scanning protein disA [Bacillus mycoides Rock1-4] gi|228758157|gb|EEM07351.1| DNA integrity scanning protein disA [Bacillus mycoides Rock1-4] gi|228764278|gb|EEM13156.1| DNA integrity scanning protein disA [Bacillus mycoides Rock3-17] gi|228770444|gb|EEM19016.1| DNA integrity scanning protein disA [Bacillus pseudomycoides DSM 12442] Length = 357 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 3/61 (4%) Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 R S + + PL L+ F T++ + R+S L +EGI + A KI Sbjct: 289 RGYRITSKISRVP---PLIIENLINRFKTLQGVCRASINELDDVEGIGEVRAKKIREGLK 345 Query: 609 K 609 + Sbjct: 346 R 346 >gi|74193975|dbj|BAE36910.1| unnamed protein product [Mus musculus] Length = 401 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 6/61 (9%) Query: 554 YSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 S L+ I GI + + F +VK ++ SSPE +++ ++ + A +IY + Sbjct: 308 TSKLEALPFYLSIPGISYITALNMCHQFSSVKKMANSSPEEISTCAQVNHQKAEEIYKYI 367 Query: 608 H 608 H Sbjct: 368 H 368 >gi|323695090|ref|ZP_08109232.1| DNA ligase [Clostridium symbiosum WAL-14673] gi|323500845|gb|EGB16765.1| DNA ligase [Clostridium symbiosum WAL-14673] Length = 663 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 7/71 (9%) Query: 550 KKAAYSPL------DEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACK 602 KKA+ + L I+GIG ++L + F + ++ E L +++GI +A Sbjct: 489 KKASETTLPRVVYSLGISGIGLANAKMLCRRFKNDFAAMRKAEKEELVAVDGIGDVLADA 548 Query: 603 IYNHFHKNTSH 613 + F ++ Sbjct: 549 WIDFFSSEKNN 559 >gi|167037529|ref|YP_001665107.1| hypothetical protein Teth39_1116 [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115944|ref|YP_004186103.1| hypothetical protein Thebr_1144 [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856363|gb|ABY94771.1| conserved hypothetical protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929035|gb|ADV79720.1| hypothetical protein Thebr_1144 [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 390 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 3/51 (5%) Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYN 605 PL+ I IG L+ FG+ + + + E L + I A I Sbjct: 320 PLEFIPNIGRKTIEKLVNYFGSELYALHHAPYEELEKV--IGPSNALNILR 368 >gi|301052018|ref|YP_003790229.1| DNA ligase [Bacillus anthracis CI] gi|300374187|gb|ADK03091.1| DNA ligase [Bacillus cereus biovar anthracis str. CI] Length = 669 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVAYFDNED 564 >gi|256750729|ref|ZP_05491614.1| DNA protecting protein DprA [Thermoanaerobacter ethanolicus CCSD1] gi|256750312|gb|EEU63331.1| DNA protecting protein DprA [Thermoanaerobacter ethanolicus CCSD1] Length = 362 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 R+K L + GIG L++ F T + + ++ + G SKK+A KI Sbjct: 3 REKIFKIWLSTVKGIGYKSFVQLMEFFKTAEEVYKAKEIDIFKAIG-SKKLAQKIIEA 59 >gi|255534095|ref|YP_003094467.1| DNA polymerase I [Pedobacter heparinus DSM 2366] gi|255347079|gb|ACU06405.1| DNA polymerase I [Pedobacter heparinus DSM 2366] Length = 939 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 12/58 (20%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLA-----SIEG------ISKKIACKIYN 605 I GIG + L++ +G+V+ I ++ L ++E ISKK+A I N Sbjct: 194 GIPGIGEKTAKALIKQYGSVENII-ANSHELKGKQRENVETYAEQGLISKKLATIILN 250 >gi|196040110|ref|ZP_03107412.1| DNA ligase (NAD(+)) [Bacillus cereus NVH0597-99] gi|196028965|gb|EDX67570.1| DNA ligase (NAD(+)) [Bacillus cereus NVH0597-99] Length = 669 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVAYFDNED 564 >gi|206974389|ref|ZP_03235306.1| DNA ligase, NAD-dependent [Bacillus cereus H3081.97] gi|217957864|ref|YP_002336408.1| NAD-dependent DNA ligase LigA [Bacillus cereus AH187] gi|254781553|sp|B7HSW5|DNLJ_BACC7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781554|sp|B9J1L6|DNLJ_BACCQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|206747629|gb|EDZ59019.1| DNA ligase, NAD-dependent [Bacillus cereus H3081.97] gi|217064176|gb|ACJ78426.1| DNA ligase, NAD-dependent [Bacillus cereus AH187] Length = 669 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVAYFDNED 564 >gi|332523413|ref|ZP_08399665.1| DNA ligase (NAD+) [Streptococcus porcinus str. Jelinkova 176] gi|332314677|gb|EGJ27662.1| DNA ligase (NAD+) [Streptococcus porcinus str. Jelinkova 176] Length = 652 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 30/56 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G RLLL++FG ++ + +S E +A I+G+ IA I +F K + Sbjct: 502 GIRHVGEKASRLLLETFGDIETVMQSDEEAIAQIDGLGHVIANSIAQYFAKPEAQQ 557 >gi|311068864|ref|YP_003973787.1| hypothetical protein BATR1942_09615 [Bacillus atrophaeus 1942] gi|310869381|gb|ADP32856.1| hypothetical protein BATR1942_09615 [Bacillus atrophaeus 1942] Length = 123 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 7/85 (8%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--SNNHTHRITHMISQINNIRFTVTCTEVE 68 GVY + LY+G + N+ KR+ + N R ++ + I ++ Sbjct: 39 GVYTFYNKYLEPLYIGISVNVGKRVMEHFGTPKGNKDLR-QYIERETVYISVFYEDRKIY 97 Query: 69 ALLLEANMIKRLKPRFNILLRDDKS 93 + E+ +IK + PRFN+ DK+ Sbjct: 98 QEIYESYLIKVMSPRFNV----DKT 118 >gi|229083402|ref|ZP_04215751.1| DNA integrity scanning protein disA [Bacillus cereus Rock3-44] gi|228699911|gb|EEL52547.1| DNA integrity scanning protein disA [Bacillus cereus Rock3-44] Length = 357 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 3/61 (4%) Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 R S + + PL L+ F T++ + R+S L +EGI + A KI Sbjct: 289 RGYRITSKISRVP---PLIIENLINRFKTLQGVCRASINELDDVEGIGEVRAKKIREGLK 345 Query: 609 K 609 + Sbjct: 346 R 346 >gi|126649600|ref|ZP_01721841.1| NAD-dependent DNA ligase LigA [Bacillus sp. B14905] gi|126593925|gb|EAZ87848.1| NAD-dependent DNA ligase LigA [Bacillus sp. B14905] Length = 667 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 28/56 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G +++ + FG+++ + ++ E L +I I K+A + +F + + Sbjct: 510 GIRHVGEKAAKIVSEQFGSMEAVMAATDEQLVAIYEIGDKMASSLVEYFSNDDAGA 565 >gi|49479078|ref|YP_034626.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118476055|ref|YP_893206.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis str. Al Hakam] gi|225862344|ref|YP_002747722.1| DNA ligase, NAD-dependent [Bacillus cereus 03BB102] gi|229182688|ref|ZP_04309929.1| DNA ligase [Bacillus cereus BGSC 6E1] gi|81397398|sp|Q6HP94|DNLJ_BACHK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166215395|sp|A0R906|DNLJ_BACAH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781551|sp|C1EV74|DNLJ_BACC3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|49330634|gb|AAT61280.1| DNA ligase(NAD+) (NAD-dependent DNA ligase) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118415280|gb|ABK83699.1| NAD-dependent DNA ligase [Bacillus thuringiensis str. Al Hakam] gi|225789655|gb|ACO29872.1| DNA ligase (NAD(+)) [Bacillus cereus 03BB102] gi|228600773|gb|EEK58352.1| DNA ligase [Bacillus cereus BGSC 6E1] Length = 669 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVAYFDNED 564 >gi|300118925|ref|ZP_07056636.1| NAD-dependent DNA ligase LigA [Bacillus cereus SJ1] gi|298723541|gb|EFI64272.1| NAD-dependent DNA ligase LigA [Bacillus cereus SJ1] Length = 669 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVAYFDNED 564 >gi|229089420|ref|ZP_04220691.1| DNA ligase [Bacillus cereus Rock3-42] gi|228693897|gb|EEL47589.1| DNA ligase [Bacillus cereus Rock3-42] Length = 669 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVAYFDNED 564 >gi|257053376|ref|YP_003131209.1| 50S ribosomal protein L32e [Halorhabdus utahensis DSM 12940] gi|256692139|gb|ACV12476.1| Ribosomal protein L32e [Halorhabdus utahensis DSM 12940] Length = 335 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 555 SPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605 + L +++GIG L +S F T+ + + + L + GI +A +I Sbjct: 7 TELTDVSGIGEETAGALRESGFETIDDLREADEDALTEVTGIGNALAARIKA 58 Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKI 603 L +I+G+G L ++ F TV+ ++R+ L +EGI +A +I Sbjct: 110 LTDISGVGEGTAENLREAGFETVEDVARAEQSDLTEVEGIGNALAARI 157 >gi|163937936|ref|YP_001642822.1| excinuclease ABC subunit C [Bacillus weihenstephanensis KBAB4] gi|163865791|gb|ABY46847.1| Excinuclease ABC C subunit domain protein [Bacillus weihenstephanensis KBAB4] Length = 237 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 2/77 (2%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQ--INNIRFTVTCTEVE 68 GVY D LYVG +L R +++ + HR+ ++ ++ + + Sbjct: 133 GVYVFYDAFSNPLYVGITGSLYHRTNTHIIGISSNHRLKELMRNDLVHRVDYMYVSNVFH 192 Query: 69 ALLLEANMIKRLKPRFN 85 + E +IK L P N Sbjct: 193 RDIYETYLIKALNPFCN 209 >gi|30260478|ref|NP_842855.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Ames] gi|49183320|ref|YP_026572.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Sterne] gi|50196911|ref|YP_052606.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. 'Ames Ancestor'] gi|65317730|ref|ZP_00390689.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II) [Bacillus anthracis str. A2012] gi|165871348|ref|ZP_02215996.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0488] gi|167634237|ref|ZP_02392559.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0442] gi|167640082|ref|ZP_02398349.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0193] gi|170688355|ref|ZP_02879564.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0465] gi|170708762|ref|ZP_02899199.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0389] gi|177653653|ref|ZP_02935792.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0174] gi|190567340|ref|ZP_03020254.1| DNA ligase, NAD-dependent [Bacillus anthracis Tsiankovskii-I] gi|190567489|ref|ZP_03020402.1| DNA ligase, NAD-dependent [Bacillus anthracis Tsiankovskii-I] gi|196034623|ref|ZP_03102031.1| DNA ligase, NAD-dependent [Bacillus cereus W] gi|227812970|ref|YP_002812979.1| DNA ligase, NAD-dependent [Bacillus anthracis str. CDC 684] gi|228913034|ref|ZP_04076673.1| DNA ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925550|ref|ZP_04088639.1| DNA ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228944102|ref|ZP_04106481.1| DNA ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229119952|ref|ZP_04249207.1| DNA ligase [Bacillus cereus 95/8201] gi|229604913|ref|YP_002864923.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0248] gi|254686689|ref|ZP_05150547.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. CNEVA-9066] gi|254739086|ref|ZP_05196788.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Western North America USA6153] gi|254742292|ref|ZP_05199978.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Kruger B] gi|254756068|ref|ZP_05208097.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Vollum] gi|254761885|ref|ZP_05213734.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Australia 94] gi|81584374|sp|Q81ZG1|DNLJ_BACAN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781547|sp|C3PBP1|DNLJ_BACAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781548|sp|C3L543|DNLJ_BACAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|30253846|gb|AAP24341.1| DNA ligase (NAD(+)) [Bacillus anthracis str. Ames] gi|49177247|gb|AAT52623.1| DNA ligase, NAD-dependent [Bacillus anthracis str. Sterne] gi|50082973|gb|AAT70114.1| DNA ligase, NAD-dependent [Bacillus anthracis str. 'Ames Ancestor'] gi|164712832|gb|EDR18361.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0488] gi|167511893|gb|EDR87272.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0193] gi|167530551|gb|EDR93266.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0442] gi|170126341|gb|EDS95231.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0389] gi|170667687|gb|EDT18441.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0465] gi|172081233|gb|EDT66308.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0174] gi|190561276|gb|EDV15248.1| DNA ligase, NAD-dependent [Bacillus anthracis Tsiankovskii-I] gi|190561467|gb|EDV15438.1| DNA ligase, NAD-dependent [Bacillus anthracis Tsiankovskii-I] gi|195992666|gb|EDX56626.1| DNA ligase, NAD-dependent [Bacillus cereus W] gi|227002604|gb|ACP12347.1| DNA ligase (NAD(+)) [Bacillus anthracis str. CDC 684] gi|228663418|gb|EEL19003.1| DNA ligase [Bacillus cereus 95/8201] gi|228815491|gb|EEM61733.1| DNA ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228834028|gb|EEM79576.1| DNA ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846439|gb|EEM91452.1| DNA ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229269321|gb|ACQ50958.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0248] Length = 669 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVAYFDNED 564 >gi|331005395|ref|ZP_08328777.1| DNA ligase [gamma proteobacterium IMCC1989] gi|330420789|gb|EGG95073.1| DNA ligase [gamma proteobacterium IMCC1989] Length = 707 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 18/45 (40%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G R L Q FG + + ++ E L + + +A I Sbjct: 554 VGEATARNLAQYFGDISRLLTATEEDLQRVNDVGPVVAQFIVAFL 598 >gi|254724765|ref|ZP_05186548.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. A1055] Length = 669 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVAYFDNED 564 >gi|228931797|ref|ZP_04094693.1| DNA ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228827777|gb|EEM73515.1| DNA ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 669 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVAYFDNED 564 >gi|218901495|ref|YP_002449329.1| DNA ligase, NAD-dependent [Bacillus cereus AH820] gi|254781549|sp|B7JM96|DNLJ_BACC0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218535434|gb|ACK87832.1| DNA ligase, NAD-dependent [Bacillus cereus AH820] Length = 669 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVAYFDNED 564 >gi|330985030|gb|EGH83133.1| Excinuclease ABC C subunit domain protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 192 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYN-LQKRIKSYMHSNNHT 45 ++ +Q+P GVY + D+ +YVG++ + ++ R+ ++ S Sbjct: 9 LAVKQLPTAIGVYVLCDLDNIPIYVGQSKDGIRSRVARHLTSARSD 54 >gi|261253653|ref|ZP_05946226.1| DNA ligase [Vibrio orientalis CIP 102891] gi|260937044|gb|EEX93033.1| DNA ligase [Vibrio orientalis CIP 102891] Length = 669 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L Q F T+ + ++ E L ++ I + +A I F ++ + T Sbjct: 521 VGEATAANLAQHFKTLDAVKIANHEALVEVQDIGEIVASHIIAFFAQDKNLT 572 >gi|284034291|ref|YP_003384222.1| hypothetical protein Kfla_6426 [Kribbella flavida DSM 17836] gi|283813584|gb|ADB35423.1| protein of unknown function DUF147 [Kribbella flavida DSM 17836] Length = 364 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 20/38 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ FG ++ + +S + L +++G+ + A + Sbjct: 314 RLIEHFGHLQKLLAASIDDLQTVDGVGENRARTVREGL 351 >gi|323341293|ref|ZP_08081538.1| NAD-dependent DNA ligase LigA [Lactobacillus ruminis ATCC 25644] gi|323091287|gb|EFZ33914.1| NAD-dependent DNA ligase LigA [Lactobacillus ruminis ATCC 25644] Length = 671 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 2/67 (2%) Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 RK + L I +G +LL + F T+ ++++S E + +IE + + IA + + Sbjct: 499 RKNSLERLLFGLGIRHVGAKAAKLLAERFMTMDALAKASKEEIVAIETMGETIADSLSTY 558 Query: 607 FHKNTSH 613 F+ ++ Sbjct: 559 FNSEGAN 565 >gi|226226196|ref|YP_002760302.1| NAD(+)-dependent DNA ligase [Gemmatimonas aurantiaca T-27] gi|254781336|sp|C1A6H2|DNLJ_GEMAT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|226089387|dbj|BAH37832.1| NAD(+)-dependent DNA ligase [Gemmatimonas aurantiaca T-27] Length = 689 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 3/61 (4%) Query: 550 KKAAYSPL---DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 K+ S L I +G +LL + +G++ + ++ E L ++ GI IA + ++ Sbjct: 514 KQQPLSRLMFGLGIRHVGAQAAQLLSRQYGSLDALMNATAEQLGAVRGIGSIIAQSVASY 573 Query: 607 F 607 F Sbjct: 574 F 574 >gi|50511007|dbj|BAD32489.1| mKIAA1596 protein [Mus musculus] Length = 1382 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 6/61 (9%) Query: 554 YSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 S L+ I GI + + F +VK ++ SSPE +++ ++ + A +IY + Sbjct: 1289 TSKLEALPFYLSIPGISYITALNMCHQFSSVKKMANSSPEEISTCAQVNHQKAEEIYKYI 1348 Query: 608 H 608 H Sbjct: 1349 H 1349 >gi|56751245|ref|YP_171946.1| NAD-dependent DNA ligase LigA [Synechococcus elongatus PCC 6301] gi|81299088|ref|YP_399296.1| NAD-dependent DNA ligase LigA [Synechococcus elongatus PCC 7942] gi|81596046|sp|Q5N2P4|DNLJ_SYNP6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|123728245|sp|Q31RL0|DNLJ_SYNE7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|56686204|dbj|BAD79426.1| DNA ligase [Synechococcus elongatus PCC 6301] gi|81167969|gb|ABB56309.1| DNA ligase, NAD-dependent [Synechococcus elongatus PCC 7942] Length = 679 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 29/49 (59%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G + + L +F + + +++++P+ LA++ GI +IA ++ F Sbjct: 524 GIRHVGSVNAKNLAATFTSAEALAQATPDELAAVYGIGSEIADAVHQWF 572 >gi|331270899|ref|YP_004385610.1| putative NAD-dependent DNA ligase [Clostridium botulinum BKT015925] gi|329127291|gb|AEB77235.1| putative NAD-dependent DNA ligase [Clostridium botulinum BKT015925] Length = 649 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 25/49 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + +G +LL++ F ++ I + + IEGI + +IYN+F Sbjct: 496 GVPNVGLGTAKLLVKQFKSIDKIMNCNLTEIYGIEGIGDVVGSEIYNYF 544 >gi|315923964|ref|ZP_07920192.1| crossover junction ATP-dependent DNA helicase RuvA [Pseudoramibacter alactolyticus ATCC 23263] gi|315622804|gb|EFV02757.1| crossover junction ATP-dependent DNA helicase RuvA [Pseudoramibacter alactolyticus ATCC 23263] Length = 231 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIACKI 603 + + L I+GIGP LL F ++ I + + +A GI KK A +I Sbjct: 96 RGLFGTLISISGIGPKAAMGLLSQFAEPELIRHIVNADAKAIARAPGIGKKTAERI 151 >gi|169838011|ref|ZP_02871199.1| Excinuclease ABC subunit C [candidate division TM7 single-cell isolate TM7a] Length = 126 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 50/119 (42%) Query: 143 FLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKI 202 F + T+PCL + +K C PC + ++Y V K FL G + + E + Sbjct: 8 FPVRDCNRNMDKITKPCLKYYMKTCPAPCKYKDIEDEYSTNVSNFKNFLKGHSDKVLEML 67 Query: 203 ARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNLACIQTCFF 261 M Q + + ++E AI R++LA L + Y++ ++ + + + Sbjct: 68 ENRMKQFSDEMEFERAINEREKLAVLKRMLETQIIEYSKEIDEDVFVFEEKGKMCSYVC 126 >gi|110597868|ref|ZP_01386151.1| DNA ligase, NAD-dependent [Chlorobium ferrooxidans DSM 13031] gi|110340593|gb|EAT59076.1| DNA ligase, NAD-dependent [Chlorobium ferrooxidans DSM 13031] Length = 674 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 R+K+ L I +G R L ++ ++ ++ ++S E L+++ + +A I + Sbjct: 511 REKSYERLLYALGIRHVGRATARELSAAYPSLDLLRQASEEELSTVPDVGPIVARSIVDF 570 Query: 607 FHKNTSHT 614 F K +S Sbjct: 571 FAKPSSAA 578 >gi|329912476|ref|ZP_08275756.1| DNA ligase [Oxalobacteraceae bacterium IMCC9480] gi|327545605|gb|EGF30768.1| DNA ligase [Oxalobacteraceae bacterium IMCC9480] Length = 679 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 6/63 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I +G + L FG + ++ ++ E L + + +AC I Sbjct: 508 KSKSTTLARFIYALGIRHVGEATAKELAAHFGQLDIVLAATEEQLLEVADVGPVVACSIL 567 Query: 605 NHF 607 F Sbjct: 568 EFF 570 >gi|225847962|ref|YP_002728125.1| holliday junction DNA helicase RuvA [Sulfurihydrogenibium azorense Az-Fu1] gi|225644479|gb|ACN99529.1| holliday junction DNA helicase RuvA [Sulfurihydrogenibium azorense Az-Fu1] Length = 181 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKM----ISRSSPETLASIEGISKKIACKI 603 K ++ L +I+G+G +L F ++ + +S ++L ++GI KK A +I Sbjct: 64 KELFNKLTQIHGVGEKHALAILGHF-SIDEFIDILDQSDVDSLTKVQGIGKKTAQRI 119 >gi|187957728|gb|AAI50786.1| Fanconi anemia, complementation group M [Mus musculus] Length = 2021 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 6/61 (9%) Query: 554 YSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 S L+ I GI + + F +VK ++ SSPE +++ ++ + A +IY + Sbjct: 1928 TSKLEALPFYLSIPGISYITALNMCHQFSSVKKMANSSPEEISTCAQVNHQKAEEIYKYI 1987 Query: 608 H 608 H Sbjct: 1988 H 1988 >gi|125623311|ref|YP_001031794.1| NAD-dependent DNA ligase LigA [Lactococcus lactis subsp. cremoris MG1363] gi|166215816|sp|A2RIF3|DNLJ_LACLM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|124492119|emb|CAL97048.1| DNA ligase [Lactococcus lactis subsp. cremoris MG1363] gi|300070060|gb|ADJ59460.1| NAD-dependent DNA ligase LigA [Lactococcus lactis subsp. cremoris NZ9000] Length = 686 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616 I +G +LLL+ F ++ +S++S E ++ I + IA + ++F T+ T Sbjct: 537 GIRHVGGKAAKLLLERFANLRALSQASEEEISEIPSLGGVIATAVVSYF--ETAGAKT 592 >gi|54112418|ref|NP_849243.2| Fanconi anemia group M protein homolog [Mus musculus] gi|78099255|sp|Q8BGE5|FANCM_MOUSE RecName: Full=Fanconi anemia group M protein homolog; Short=Protein FACM; AltName: Full=ATP-dependent RNA helicase FANCM Length = 2021 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 6/61 (9%) Query: 554 YSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 S L+ I GI + + F +VK ++ SSPE +++ ++ + A +IY + Sbjct: 1928 TSKLEALPFYLSIPGISYITALNMCHQFSSVKKMANSSPEEISTCAQVNHQKAEEIYKYI 1987 Query: 608 H 608 H Sbjct: 1988 H 1988 >gi|116511279|ref|YP_808495.1| NAD-dependent DNA ligase LigA [Lactococcus lactis subsp. cremoris SK11] gi|122940331|sp|Q031P9|DNLJ_LACLS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116106933|gb|ABJ72073.1| NAD-dependent DNA ligase [Lactococcus lactis subsp. cremoris SK11] Length = 686 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616 I +G +LLL+ F ++ +S++S E ++ I + IA + ++F T+ T Sbjct: 537 GIRHVGGKAAKLLLERFANLRALSQASEEEISEIPSLGGVIATAVVSYF--ETAGAKT 592 >gi|283765964|gb|ADB28380.1| excinuclease ABC subunit C [Bacillus phage 250] Length = 290 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 3/71 (4%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G+Y + D +++YVGKAY ++ R+ ++ ++T H+ +++ F + + ++ Sbjct: 48 GIYLITDHNDKIVYVGKAYKIKTRVNAHFKGYSNTRDHAHLFNKVA---FILEDSPLKRS 104 Query: 71 LLEANMIKRLK 81 LLE + K Sbjct: 105 LLEITYMIEHK 115 >gi|169825829|ref|YP_001695987.1| DNA ligase [Lysinibacillus sphaericus C3-41] gi|254781361|sp|B1HTW6|DNLJ_LYSSC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|168990317|gb|ACA37857.1| DNA ligase [Lysinibacillus sphaericus C3-41] Length = 667 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 28/56 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G +++ + FG+++ + ++ E L +I I K+A + +F + + Sbjct: 510 GIRHVGEKAAKIVSEQFGSMEAVMAATEEQLVAIYEIGDKMASSLVEYFSNDDARA 565 >gi|322387936|ref|ZP_08061543.1| NAD-dependent DNA ligase LigA [Streptococcus infantis ATCC 700779] gi|321141209|gb|EFX36707.1| NAD-dependent DNA ligase LigA [Streptococcus infantis ATCC 700779] Length = 652 Score = 47.4 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 31/49 (63%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G +LLLQ F +++ +++++PE +ASIE + IA + ++F Sbjct: 502 GIRHVGSKASQLLLQHFHSIESLAQANPEEVASIESLGNVIAQSLQSYF 550 Score = 38.9 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 8/61 (13%) Query: 559 EINGIGPLRKRLLLQSF-----GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I+G+GP L F V I R + E ++GI +K A K+Y + + Sbjct: 436 NISGLGPSIVEKL---FAANLVKDVADIYRLTVEDFLVLDGIKEKSAQKLYQAIQASKEN 492 Query: 614 T 614 + Sbjct: 493 S 493 >gi|149374973|ref|ZP_01892746.1| DNA ligase, NAD-dependent [Marinobacter algicola DG893] gi|149360862|gb|EDM49313.1| DNA ligase, NAD-dependent [Marinobacter algicola DG893] Length = 676 Score = 47.4 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 22/45 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + L FGT++ IS + + L S+ + +A I + F Sbjct: 524 VGEATAKGLASYFGTLESISEADEDALQSVPDVGPIVAGHIRSFF 568 >gi|297619461|ref|YP_003707566.1| ERCC4 domain-containing protein [Methanococcus voltae A3] gi|297378438|gb|ADI36593.1| ERCC4 domain protein [Methanococcus voltae A3] Length = 822 Score = 47.4 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 7/67 (10%) Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY-- 604 K R+K + + +GP+ LL F TV+ + +S L ++EG+ + A I Sbjct: 754 KERQKFLV---EGLPDVGPVMAENLLMKFDTVEDVFTASERELMTVEGVGEITAKSIRKV 810 Query: 605 --NHFHK 609 N F+K Sbjct: 811 ITNKFNK 817 >gi|76799924|ref|ZP_00781928.1| competence protein CelA [Streptococcus agalactiae 18RS21] gi|76584724|gb|EAO61478.1| competence protein CelA [Streptococcus agalactiae 18RS21] Length = 94 Score = 47.4 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 KA S L I+G+G R + +L + + + L ++ GI +K K+ Sbjct: 37 KADLSSLQTISGVGAKRAQDILDYRDSQGGFK--TIDDLKNVSGIGEKTLEKLRQ 89 >gi|172036733|ref|YP_001803234.1| DNA ligase [Cyanothece sp. ATCC 51142] gi|254781304|sp|B1WZL6|DNLJ_CYAA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|171698187|gb|ACB51168.1| DNA ligase [Cyanothece sp. ATCC 51142] Length = 676 Score = 47.4 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 30/45 (66%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + LL+++F ++ +S++S +L+S+ G+ ++IA I + F Sbjct: 522 VGSVTANLLVENFPSIDQLSQASFASLSSVYGVGEEIAQSIIDWF 566 >gi|15896435|ref|NP_349784.1| DNA integrity scanning protein DisA [Clostridium acetobutylicum ATCC 824] gi|81529413|sp|Q97EC6|DISA_CLOAB RecName: Full=DNA integrity scanning protein disA gi|15026257|gb|AAK81124.1|AE007814_2 Predicted nucleic-acid-binding protein protein, containing HHH domain, YACK B.subtilis ortholog [Clostridium acetobutylicum ATCC 824] gi|325510592|gb|ADZ22228.1| nucleic-acid-binding protein protein, containing HHH domain, YACK [Clostridium acetobutylicum EA 2018] Length = 357 Score = 47.4 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 21/42 (50%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L+++F +K I +S E L +EGI + A I + K Sbjct: 305 IENLVKNFKELKKILEASHEDLDKVEGIGEARARAIKSGLRK 346 >gi|312136410|ref|YP_004003747.1| DNA repair and recombination protein rada [Methanothermus fervidus DSM 2088] gi|311224129|gb|ADP76985.1| DNA repair and recombination protein RadA [Methanothermus fervidus DSM 2088] Length = 311 Score = 47.4 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 555 SPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + L+ + +G + L + FG + I+ ++P+ LA I + IA KI K Sbjct: 2 TELENLPNVGQKTAKKLRDAGFGDIMRIATATPKELAVKAEIGEGIAEKIIAAARK 57 >gi|262402686|ref|ZP_06079247.1| DNA ligase [Vibrio sp. RC586] gi|262351468|gb|EEZ00601.1| DNA ligase [Vibrio sp. RC586] Length = 669 Score = 47.4 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 22/45 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G L Q F T++ I+++S E L + + +A ++ F Sbjct: 520 VGEATALNLAQHFLTLEAIAQASIEQLIEVPDVGGVVASHLHAFF 564 >gi|53718203|ref|YP_107189.1| hypothetical protein BPSL0563 [Burkholderia pseudomallei K96243] gi|167737074|ref|ZP_02409848.1| hypothetical protein Bpse14_03361 [Burkholderia pseudomallei 14] gi|167814188|ref|ZP_02445868.1| hypothetical protein Bpse9_03538 [Burkholderia pseudomallei 91] gi|52208617|emb|CAH34553.1| hypothetical protein BPSL0563 [Burkholderia pseudomallei K96243] Length = 154 Score = 47.4 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 10/55 (18%) Query: 8 ECPGVYQM---LDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIR 59 + PGVY LYVGKA NL+ RIK +++ ++ QI + Sbjct: 32 DVPGVYVFARKYGSRVTPLYVGKALNLKGRIKQQLNN-------LRLMRQIQDWE 79 >gi|325286330|ref|YP_004262120.1| DNA protecting protein DprA [Cellulophaga lytica DSM 7489] gi|324321784|gb|ADY29249.1| DNA protecting protein DprA [Cellulophaga lytica DSM 7489] Length = 366 Score = 47.4 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 23/58 (39%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 L I IG + + L+ G+ I S L I+GI I++ H + + Sbjct: 11 RLQSIPNIGSVTAKKLIAHCGSASQIFSSRKTDLLKIDGIGTLKLKNIFDTSHLDAAE 68 >gi|269128662|ref|YP_003302032.1| hypothetical protein Tcur_4467 [Thermomonospora curvata DSM 43183] gi|268313620|gb|ACY99994.1| protein of unknown function DUF147 [Thermomonospora curvata DSM 43183] Length = 361 Score = 47.4 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 19/37 (51%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ FG ++ + +S + L S+ G+ + A + Sbjct: 312 LVEHFGGLQKLLAASIDDLQSVNGVGESRARSVREGL 348 >gi|75760809|ref|ZP_00740826.1| Endo/excinuclease amino terminal domain [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218906640|ref|YP_002454474.1| excinuclease ABC, C subunit, putative [Bacillus cereus AH820] gi|74491695|gb|EAO54894.1| Endo/excinuclease amino terminal domain [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218534822|gb|ACK87220.1| excinuclease ABC, C subunit, putative [Bacillus cereus AH820] Length = 118 Score = 47.4 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 4/78 (5%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 GVY + + LYVG + +L+ R+ S+++ ++ ++ I T + Sbjct: 38 NGSGVYVIFNKQFEPLYVGCSKDLKTRLPSHLYKGK--RKLEGYFDEVLFIGIKYTQGDP 95 Query: 68 EALLLEANMIKRLKPRFN 85 +LE IKR +P N Sbjct: 96 T--ILERKYIKRFEPLLN 111 >gi|268564795|ref|XP_002639231.1| Hypothetical protein CBG03787 [Caenorhabditis briggsae] Length = 233 Score = 47.4 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 21/39 (53%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 LL FGT++ IS +S +++ G+ A +++ H Sbjct: 187 RLLYHFGTLQEISTASETAISACPGVGPIKAKNLHSFLH 225 >gi|261822799|ref|YP_003260905.1| NAD-dependent DNA ligase LigA [Pectobacterium wasabiae WPP163] gi|261606812|gb|ACX89298.1| DNA ligase, NAD-dependent [Pectobacterium wasabiae WPP163] Length = 681 Score = 47.4 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 8/52 (15%), Positives = 23/52 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L FG+++ + + + L ++ + K +A + + + + T Sbjct: 527 VGESTAANLAAHFGSLEALFAADEDALLAVPDVGKIVAAHVRHFLEEEHNQT 578 >gi|149019544|ref|ZP_01834863.1| competence protein CelA [Streptococcus pneumoniae SP23-BS72] gi|147930919|gb|EDK81899.1| competence protein CelA [Streptococcus pneumoniae SP23-BS72] Length = 216 Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 14/62 (22%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIY 604 KA+ L ++ G+G R + ++ F +V + L ++ GI K K+ Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDHRETNGKFKSV--------DELKTVSGIGAKTIEKLK 210 Query: 605 NH 606 ++ Sbjct: 211 DY 212 >gi|123968602|ref|YP_001009460.1| helix-hairpin-helix DNA-binding motif-containing protein [Prochlorococcus marinus str. AS9601] gi|123198712|gb|ABM70353.1| Helix-hairpin-helix DNA-binding motif class 1 [Prochlorococcus marinus str. AS9601] Length = 105 Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L + G+G + L ++ F T K + + + L ++ G+ + K+ N Sbjct: 54 LTTLPGVGAKSAKALYEAGFKTTKAVIAADEKDLLAVSGVGINLVKKLKN 103 >gi|326390897|ref|ZP_08212448.1| DNA ligase, NAD-dependent [Thermoanaerobacter ethanolicus JW 200] gi|325993045|gb|EGD51486.1| DNA ligase, NAD-dependent [Thermoanaerobacter ethanolicus JW 200] Length = 662 Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 23/50 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 IG +++ + F T+ I ++ E + I K+A I + F + + Sbjct: 511 IGSKAAQVIAEHFKTMDNIMKAKFEDFTHLPDIGPKMARSIVSFFAEKQN 560 >gi|300813320|ref|ZP_07093675.1| DNA ligase (NAD(+)) [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512591|gb|EFK39736.1| DNA ligase (NAD(+)) [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 664 Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 20/49 (40%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G R L + + S++S + L + I A +I N F Sbjct: 510 GIANVGIKTARDLAKHYKNFMAFSKASFDDLIEVGDIGPITAKEIINFF 558 >gi|217972882|ref|YP_002357633.1| DNA ligase, NAD-dependent [Shewanella baltica OS223] gi|254781416|sp|B8EEK5|DNLJ_SHEB2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|217498017|gb|ACK46210.1| DNA ligase, NAD-dependent [Shewanella baltica OS223] Length = 685 Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 19/45 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G L F ++ + ++ E L +E + +A + + F Sbjct: 534 VGEATAANLAAHFASLDALRVATVEQLTEVEDVGAVVAQHVAHFF 578 >gi|153001196|ref|YP_001366877.1| DNA ligase, NAD-dependent [Shewanella baltica OS185] gi|166216241|sp|A6WPS5|DNLJ_SHEB8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|151365814|gb|ABS08814.1| DNA ligase, NAD-dependent [Shewanella baltica OS185] Length = 685 Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 19/45 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G L F ++ + ++ E L +E + +A + + F Sbjct: 534 VGEATAANLAAHFASLDALRVATVEQLTEVEDVGAVVAQHVAHFF 578 >gi|126661546|ref|ZP_01732591.1| hypothetical protein CY0110_00975 [Cyanothece sp. CCY0110] gi|126617171|gb|EAZ87995.1| hypothetical protein CY0110_00975 [Cyanothece sp. CCY0110] Length = 251 Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 5/49 (10%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKS-----YMHSNNHTHRI 48 ++P G+Y + + ++LY+GKA NL+ R S Y ++ RI Sbjct: 55 KLPSQAGIYFVYTLDHQLLYIGKADNLRTRWNSHHKYQYFIESSMDSRI 103 >gi|160875869|ref|YP_001555185.1| DNA ligase, NAD-dependent [Shewanella baltica OS195] gi|190359285|sp|A9L5Z1|DNLJ_SHEB9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|160861391|gb|ABX49925.1| DNA ligase, NAD-dependent [Shewanella baltica OS195] gi|315268060|gb|ADT94913.1| DNA ligase, NAD-dependent [Shewanella baltica OS678] Length = 685 Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 19/45 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G L F ++ + ++ E L +E + +A + + F Sbjct: 534 VGEATAANLAAHFASLDALRVATVEQLTEVEDVGAVVAQHVAHFF 578 >gi|125974289|ref|YP_001038199.1| DNA integrity scanning protein DisA [Clostridium thermocellum ATCC 27405] gi|166201836|sp|A3DGC7|DISA_CLOTH RecName: Full=DNA integrity scanning protein disA gi|125714514|gb|ABN53006.1| protein of unknown function DUF147 [Clostridium thermocellum ATCC 27405] Length = 360 Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 21/42 (50%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 R L++ F ++ I +S E L + GI + A I++ + Sbjct: 307 IRNLVKKFSNLQGILNASIEELDDVAGIGEVRARIIWDGLRR 348 >gi|311900456|dbj|BAJ32864.1| putative DNA ligase [Kitasatospora setae KM-6054] Length = 718 Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 25/51 (49%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + G G R + FG++ I + ETLA++EGI + A + + + Sbjct: 537 GVRGTGRSMSRRIAAHFGSMAAIRAADAETLAAVEGIGPEKARLVVSELAE 587 >gi|309389959|gb|ADO77839.1| DNA integrity scanning, DisA, linker region [Halanaerobium praevalens DSM 2228] Length = 359 Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 21/42 (50%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L++ F ++ I R+S + L ++GI + A I + + Sbjct: 307 IENLVEHFENLQAIIRASVDDLDDVDGIGEVRAQAIKDGLRR 348 >gi|307709253|ref|ZP_07645711.1| DNA ligase, NAD-dependent [Streptococcus mitis SK564] gi|307619836|gb|EFN98954.1| DNA ligase, NAD-dependent [Streptococcus mitis SK564] Length = 648 Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 30/55 (54%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G +LLLQ F +++ ++++ PE +ASIE + IA + +F S Sbjct: 498 GIRHVGNKASQLLLQHFHSIENLAQADPEEVASIESLGGVIAKSLQTYFATEGSE 552 >gi|296128426|ref|YP_003635676.1| DNA integrity scanning, DisA, linker region [Cellulomonas flavigena DSM 20109] gi|296020241|gb|ADG73477.1| DNA integrity scanning, DisA, linker region [Cellulomonas flavigena DSM 20109] Length = 358 Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 20/38 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L+ FG ++ + ++ + L ++EG+ ++ A + Sbjct: 308 RLVGHFGGLQKLLAATIDDLMAVEGVGEQRARSVREGL 345 >gi|229159446|ref|ZP_04287464.1| DNA ligase [Bacillus cereus R309803] gi|228624017|gb|EEK80825.1| DNA ligase [Bacillus cereus R309803] Length = 669 Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDGLVKATEEELKAINEIGEKMAQSVVAYFDNED 564 >gi|227498670|ref|ZP_03928814.1| DNA ligase [Acidaminococcus sp. D21] gi|226904126|gb|EEH90044.1| DNA ligase [Acidaminococcus sp. D21] Length = 674 Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 6/62 (9%) Query: 552 AAYSPLDE------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 + + LD+ I +G R L + T+ + ++ E LA I I IA + Sbjct: 503 SKENSLDKLLFALGIRHVGAKVARTLAMKYQTMDALMEATQEELAQIPDIGPVIAESVVT 562 Query: 606 HF 607 +F Sbjct: 563 YF 564 >gi|226311964|ref|YP_002771858.1| hypothetical protein BBR47_23770 [Brevibacillus brevis NBRC 100599] gi|226094912|dbj|BAH43354.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 390 Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%) Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNH 606 PL+ I G+GP L +SFGT + ++ R++ E L + G +KIA I Sbjct: 320 PLEFIPGVGPKLLDKLYRSFGTQMNVLHRATEEELTHVVG--EKIASLIVQA 369 >gi|23013561|ref|ZP_00053441.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II) [Magnetospirillum magnetotacticum MS-1] Length = 696 Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 4/56 (7%) Query: 563 IGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKIYNHFHKNTSHT 614 IG + L + +G + + + L SIE I +A + + F + + Sbjct: 539 IGEATAKRLARHYGGFQAWRDAMTEEGKDELTSIEDIGPSVAADLLDFFKEEHNRA 594 >gi|282882908|ref|ZP_06291513.1| DNA ligase (NAD(+)) [Peptoniphilus lacrimalis 315-B] gi|281297319|gb|EFA89810.1| DNA ligase (NAD(+)) [Peptoniphilus lacrimalis 315-B] Length = 664 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 20/49 (40%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G R L + + S++S + L + I A +I N F Sbjct: 510 GIANVGIKTARDLAKHYKNFMAFSKASFDDLIEVGDIGPITAKEIINFF 558 >gi|149192011|ref|ZP_01870239.1| NAD-dependent DNA ligase LigA [Vibrio shilonii AK1] gi|148834147|gb|EDL51156.1| NAD-dependent DNA ligase LigA [Vibrio shilonii AK1] Length = 667 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 8/51 (15%), Positives = 21/51 (41%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 +G L F T++ + ++ + L + + + +A I F ++ Sbjct: 518 VGEATAANLSTHFETLENVMNATHDQLIEVPDVGEIVAKHIRFFFAAESNQ 568 >gi|121534789|ref|ZP_01666609.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermosinus carboxydivorans Nor1] gi|121306584|gb|EAX47506.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermosinus carboxydivorans Nor1] Length = 187 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 A+ + LD++ GIGP + ++ ++ E + + GI + +I + Sbjct: 132 ASANELDKLPGIGPALAQRIIDYRQSIGGFK--DLEEVKKVPGIGEAKFNQIKD 183 >gi|148378173|ref|YP_001252714.1| helicase, RecD/TraA family [Clostridium botulinum A str. ATCC 3502] gi|153932456|ref|YP_001382573.1| RecD/TraA family helicase [Clostridium botulinum A str. ATCC 19397] gi|153936042|ref|YP_001386126.1| RecD/TraA family helicase [Clostridium botulinum A str. Hall] gi|148287657|emb|CAL81722.1| putative DNA-interacting protein [Clostridium botulinum A str. ATCC 3502] gi|152928500|gb|ABS34000.1| helicase, RecD/TraA family [Clostridium botulinum A str. ATCC 19397] gi|152931956|gb|ABS37455.1| helicase, RecD/TraA family [Clostridium botulinum A str. Hall] Length = 744 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN-HFHKNT 611 I+GIGP+ + +++ FG T+ I ++ E L IEGI KK IY+ + +N Sbjct: 88 ISGIGPVTAKKIVKKFGEETL-NILDNNIERLTEIEGIGKKKIEVIYDSYIKQNE 141 >gi|297618413|ref|YP_003703572.1| DNA integrity scanning, DisA, linker region [Syntrophothermus lipocalidus DSM 12680] gi|297146250|gb|ADI03007.1| DNA integrity scanning, DisA, linker region [Syntrophothermus lipocalidus DSM 12680] Length = 363 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 21/40 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L+ +FG+ I R+S E L +EGI + A I N + Sbjct: 313 NLVATFGSFSNIIRASIEELDDVEGIGEVRARSIRNGLKR 352 >gi|282889987|ref|ZP_06298522.1| hypothetical protein pah_c008o090 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500180|gb|EFB42464.1| hypothetical protein pah_c008o090 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 238 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 22/40 (55%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 + ++ FG+++ ++ ++ E L I+G+ A ++ + Sbjct: 55 QEIMSRFGSLQNLADATIEELCQIKGLGTAKAIQLKAALN 94 >gi|289208209|ref|YP_003460275.1| ERCC4 domain protein [Thioalkalivibrio sp. K90mix] gi|288943840|gb|ADC71539.1| ERCC4 domain protein [Thioalkalivibrio sp. K90mix] Length = 215 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 KRR A + + + G+ P R LL+ FG+V+ + + E LA ++G+ + A +I Sbjct: 149 KRRAAAEF-IISGLPGVEPDLARDLLRQFGSVRDVLNTDAEQLAEVDGMDLERAQRI 204 >gi|257060505|ref|YP_003138393.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 8802] gi|256590671|gb|ACV01558.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 8802] Length = 674 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 34/52 (65%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G + +LL +F +V+++S++S TLAS+ G+ ++IA +++ F + T Sbjct: 521 VGNVTAKLLTDNFPSVEVLSQASVPTLASVYGVGEEIAQSVFDWFKIAENQT 572 >gi|90416525|ref|ZP_01224456.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2207] gi|90331724|gb|EAS46952.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2207] Length = 677 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + L ++FG+++ I + + L ++ I +A I + F + Sbjct: 526 VGEATGQTLARNFGSLEAIIEAEQDALLEVDDIGPVVAYYIRDFFRNPDN 575 >gi|319744775|gb|EFV97115.1| competence protein CelA [Streptococcus agalactiae ATCC 13813] Length = 217 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 KA S L I+G+G R + +L + + + L ++ GI +K K+ Sbjct: 160 KADLSSLQTISGVGAKRAQDILDYRDSQGGFK--TIDDLKNVSGIGEKTLEKLRQ 212 >gi|254785950|ref|YP_003073379.1| DNA ligase, NAD-dependent [Teredinibacter turnerae T7901] gi|237685872|gb|ACR13136.1| DNA ligase, NAD-dependent [Teredinibacter turnerae T7901] Length = 676 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 25/52 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G R + Q FG +K + + E L +++ + +A I++ F + + Sbjct: 526 VGQATARNIAQHFGMLKNLMDADQEALVAVDDVGPIVAHHIFDFFQQQGNRA 577 >gi|193212122|ref|YP_001998075.1| DNA ligase, NAD-dependent [Chlorobaculum parvum NCIB 8327] gi|254781284|sp|B3QLI5|DNLJ_CHLP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|193085599|gb|ACF10875.1| DNA ligase, NAD-dependent [Chlorobaculum parvum NCIB 8327] Length = 674 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 548 RRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 + KK +Y+ L I +G R L + ++ + E LA++ I IA I Sbjct: 509 KSKKQSYARLLFALGIRHVGAATARELAHACPSIDRLREMGEEELAAVPDIGPVIAASIR 568 Query: 605 NHFHK 609 + F K Sbjct: 569 DFFAK 573 >gi|194754132|ref|XP_001959351.1| GF12823 [Drosophila ananassae] gi|190620649|gb|EDV36173.1| GF12823 [Drosophila ananassae] Length = 236 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 545 HRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 H+K + L I + LLQ+FG + I +S E L+ + G+ + A K++ Sbjct: 172 HQKL-----VTALTNIKPVNKTDAVTLLQTFGNLGNIITASEERLSQVIGLGPRKAKKLH 226 Query: 605 NHFHK 609 + Sbjct: 227 KTLQE 231 >gi|295135415|ref|YP_003586091.1| DNA ligase [Zunongwangia profunda SM-A87] gi|294983430|gb|ADF53895.1| DNA ligase [Zunongwangia profunda SM-A87] Length = 812 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 23/50 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + R + + FG + + ++ E L + + +++A I F + Sbjct: 665 VGEVSARKIAEHFGNIDKLMAANTEELIQLRDVGERVAASIIEFFTDEEN 714 >gi|257053690|ref|YP_003131523.1| NAD-dependent DNA ligase LigA [Halorhabdus utahensis DSM 12940] gi|256692453|gb|ACV12790.1| DNA ligase, NAD-dependent [Halorhabdus utahensis DSM 12940] Length = 693 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 19/35 (54%) Query: 573 QSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + FGT + + + E L +++ I K+A +I F Sbjct: 551 REFGTFEAVMDADREQLQAVDDIGPKVAAEIREFF 585 >gi|88854456|ref|ZP_01129123.1| hypothetical protein A20C1_09569 [marine actinobacterium PHSC20C1] gi|88816264|gb|EAR26119.1| hypothetical protein A20C1_09569 [marine actinobacterium PHSC20C1] Length = 142 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 38/119 (31%) Query: 5 QMPECPGVYQMLDIAGRVLYVGK---AYNLQKRIKSYMHSNNHTHR-------------- 47 +P PGVY G +Y G+ A L+ R+ +++ R Sbjct: 26 DIPIAPGVYIWF-KNGEPVYAGRAKGAKGLRDRLSNHLAKTVDLSRSTFRASVASDLLGL 84 Query: 48 ------------ITHMISQINN------IRFTVTCTEVEALLL-EANMIKRLKPRFNIL 87 I+ +N+ + + + VEA + E +I +P NI Sbjct: 85 SRAVTTARPSVLTLDQIALVNDWISGCQLAWVECES-VEATIAFEIALISERRPPLNIQ 142 >gi|309364436|emb|CAP24618.2| CBR-ERCC-1 protein [Caenorhabditis briggsae AF16] Length = 251 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 21/39 (53%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 LL FGT++ IS +S +++ G+ A +++ H Sbjct: 205 RLLYHFGTLQEISTASETAISACPGVGPIKAKNLHSFLH 243 >gi|299535244|ref|ZP_07048568.1| DNA ligase [Lysinibacillus fusiformis ZC1] gi|298729365|gb|EFI69916.1| DNA ligase [Lysinibacillus fusiformis ZC1] Length = 667 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 27/56 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G +++ + FG+++ + ++ E L +I I K+A + +F + Sbjct: 510 GIRHVGEKAAKIVSEEFGSMEAVMAATEEQLVAIYEIGDKMASSLVEYFSNEDARA 565 >gi|255038855|ref|YP_003089476.1| DNA ligase, NAD-dependent [Dyadobacter fermentans DSM 18053] gi|254951611|gb|ACT96311.1| DNA ligase, NAD-dependent [Dyadobacter fermentans DSM 18053] Length = 695 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 21/83 (25%) Query: 542 ITTHRKRRKKAAYSPLDEIN--------------GI---GPLRKRLLLQSFGTVKMISRS 584 I+ R+K + L I GI G L F +++ + + Sbjct: 510 ISF----REKTVENILKGIEVSRTVPFKNVLFALGIRFVGQTVAEKLAAYFKSMRALRAA 565 Query: 585 SPETLASIEGISKKIACKIYNHF 607 + E L ++ I +IA I + F Sbjct: 566 TYEQLTAVPEIGGRIALSIESFF 588 >gi|259047691|ref|ZP_05738092.1| DNA ligase, NAD-dependent [Granulicatella adiacens ATCC 49175] gi|259035882|gb|EEW37137.1| DNA ligase, NAD-dependent [Granulicatella adiacens ATCC 49175] Length = 668 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%) Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 AI + + + L I +G + L Q F +K + +S E L I+G+ IA Sbjct: 495 AIENSKANSLERLLTGL-GIRHVGTKAAKELAQHFENMKALQEASIEQLLEIDGLGDIIA 553 Query: 601 CKIYNHF 607 + +F Sbjct: 554 YSVKTYF 560 >gi|256752063|ref|ZP_05492931.1| conserved hypothetical protein [Thermoanaerobacter ethanolicus CCSD1] gi|256749073|gb|EEU62109.1| conserved hypothetical protein [Thermoanaerobacter ethanolicus CCSD1] Length = 97 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 3/51 (5%) Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYN 605 PL+ I IG L+ FG+ + + + E L + I A I Sbjct: 27 PLEFIPNIGRKTIEKLVNYFGSELYALHHAPYEELEKV--IGPSNALNILR 75 >gi|206602206|gb|EDZ38688.1| Transcription termination factor (NusA) [Leptospirillum sp. Group II '5-way CG'] Length = 452 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 7/69 (10%) Query: 554 YSPL--DEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIY----NH 606 S L +++ G+G +L + F T++ I+ +S E ++++ K A K+ + Sbjct: 373 TSLLRIEDLPGVGGNMAEILRDAGFDTLQAIAHASVEAISALPKFGPKTAAKLIQTAQDF 432 Query: 607 FHKNTSHTP 615 ++T TP Sbjct: 433 LGESTGETP 441 >gi|218961271|ref|YP_001741046.1| DNA ligase, NAD-dependent [Candidatus Cloacamonas acidaminovorans] gi|167729928|emb|CAO80840.1| DNA ligase, NAD-dependent [Candidatus Cloacamonas acidaminovorans] Length = 667 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 23/54 (42%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I IG + R L Q F + + + E L S+ I IA I F + ++ Sbjct: 516 GIRHIGSITARTLAQHFKNIDALIMAKEEELLSVPDIGSIIARSIIGFFSQKSN 569 >gi|281355863|ref|ZP_06242357.1| DNA protecting protein DprA [Victivallis vadensis ATCC BAA-548] gi|281318743|gb|EFB02763.1| DNA protecting protein DprA [Victivallis vadensis ATCC BAA-548] Length = 380 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 25/51 (49%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 L+ I+G+G ++ L FG+ + R S L + GI + +A KI Sbjct: 9 VLNMISGVGYVKYTALCDEFGSPAGVFRRSARELMHVPGIGETLAVKIAEF 59 >gi|311068958|ref|YP_003973881.1| YqxK protein [Bacillus atrophaeus 1942] gi|310869475|gb|ADP32950.1| YqxK [Bacillus atrophaeus 1942] Length = 387 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNH 606 PL + G+GP L +FGT + ++ ++S E LA + +S K A I Sbjct: 318 PLQFVPGVGPKTLEKLKSAFGTEMSILHQASEEELAKV--VSPKTAALIVKA 367 >gi|299534484|ref|ZP_07047817.1| YqxK [Lysinibacillus fusiformis ZC1] gi|298730112|gb|EFI70654.1| YqxK [Lysinibacillus fusiformis ZC1] Length = 388 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMIS-RSSPETLASIEGISKKIACKI 603 PLD I GIGP L+++FGT I R + + L I + K+A I Sbjct: 318 PLDFIPGIGPKMMERLIRAFGTEMNILHRVTIDQLEQI--VPHKLAQLI 364 >gi|281490961|ref|YP_003352941.1| NAD-dependent DNA ligase [Lactococcus lactis subsp. lactis KF147] gi|281374719|gb|ADA64239.1| NAD-dependent DNA ligase [Lactococcus lactis subsp. lactis KF147] Length = 654 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 27/49 (55%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G +LLL+ F ++ +S+++ E ++ I + IA + ++F Sbjct: 505 GIRHVGGKAAKLLLERFANLRALSKATEEEISEIPSLGGVIATAVVSYF 553 >gi|194246669|ref|YP_002004308.1| NAD-dependent DNA ligase [Candidatus Phytoplasma mali] gi|254781388|sp|B3QZS5|DNLJ_PHYMT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|193807026|emb|CAP18462.1| NAD-dependent DNA ligase [Candidatus Phytoplasma mali] Length = 659 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 24/49 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G ++L Q F + + ++S E+L I+ I K A I N F Sbjct: 506 GIKNVGIHLAKILAQKFENIDNLQKASIESLLKIDEIGIKSAQNIKNFF 554 >gi|15672401|ref|NP_266575.1| NAD-dependent DNA ligase LigA [Lactococcus lactis subsp. lactis Il1403] gi|81538437|sp|Q9CIE4|DNLJ_LACLA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|12723294|gb|AAK04517.1|AE006278_8 DNA ligase [Lactococcus lactis subsp. lactis Il1403] gi|326405996|gb|ADZ63067.1| NAD-dependent DNA ligase [Lactococcus lactis subsp. lactis CV56] Length = 654 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 27/49 (55%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G +LLL+ F ++ +S+++ E ++ I + IA + ++F Sbjct: 505 GIRHVGGKAAKLLLERFANLRALSKATEEEISEIPSLGGVIATAVVSYF 553 >gi|255009394|ref|ZP_05281520.1| putative DNA ligase [Bacteroides fragilis 3_1_12] gi|313147153|ref|ZP_07809346.1| DNA ligase [Bacteroides fragilis 3_1_12] gi|313135920|gb|EFR53280.1| DNA ligase [Bacteroides fragilis 3_1_12] Length = 665 Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 28/50 (56%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + + +SF + + + ETL SI+ I +KIA I N+F +++ Sbjct: 515 VGETVAKKIAKSFKDIVELENADLETLVSIDEIGEKIAQSILNYFANDSN 564 >gi|198284782|ref|YP_002221103.1| PHP domain-containing protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666221|ref|YP_002427466.1| DNA polymerase X family protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|198249303|gb|ACH84896.1| PHP domain protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518434|gb|ACK79020.1| DNA polymerase X family protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 576 Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Query: 554 YSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPE-TLASIEGISKKIACKIYNHFHKN 610 + L ++ G+GP R + L TV ++R++ E + SI G +K +I Sbjct: 93 LTELLKVPGLGPKRVKALWHELDVETVDQLTRAAREGRIRSIPGFGEKTEARILEALQAQ 152 Query: 611 TSHTP 615 + P Sbjct: 153 IAAVP 157 >gi|85003083|gb|ABC68603.1| DNA polymerase I [Geobacillus caldoxylosilyticus] Length = 878 Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 + GIG LL+ FG+V+ I +S E + Sbjct: 194 GVPGIGEKTAVKLLKQFGSVENIL-ASIEQI 223 >gi|329121050|ref|ZP_08249681.1| NAD-dependent DNA ligase LigA [Dialister micraerophilus DSM 19965] gi|327471212|gb|EGF16666.1| NAD-dependent DNA ligase LigA [Dialister micraerophilus DSM 19965] Length = 666 Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 25/54 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G L+ + F + ++ +S +++ S+ GI A IY +F + Sbjct: 513 GIRHLGEKGSELISEKFKDIDVLMNASVDSIKSVSGIGNITAEHIYKYFKNEKN 566 >gi|257463090|ref|ZP_05627491.1| NAD-dependent DNA ligase [Fusobacterium sp. D12] gi|317060689|ref|ZP_07925174.1| DNA ligase [Fusobacterium sp. D12] gi|313686365|gb|EFS23200.1| DNA ligase [Fusobacterium sp. D12] Length = 673 Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +G + +LL + + + + E L IEGI K+A I F Sbjct: 516 GIPFVGKVAAKLLAKESKNINQLQSMTEEDLKEIEGIGDKMARSIVEFFQNE 567 >gi|239624075|ref|ZP_04667106.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522106|gb|EEQ61972.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 650 Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 559 EINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I GIG ++L + F + + + + + L +++GI +A ++F ++ Sbjct: 497 GIAGIGLANAKMLCREFKSDFEKMRHAQADELVAVDGIGGVLAQAWMDYFASEKNN 552 >gi|313891779|ref|ZP_07825384.1| DNA ligase (NAD+) [Dialister microaerophilus UPII 345-E] gi|313119773|gb|EFR42960.1| DNA ligase (NAD+) [Dialister microaerophilus UPII 345-E] Length = 666 Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 25/54 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G L+ + F + ++ +S +++ S+ GI A IY +F + Sbjct: 513 GIRHLGEKGSELISEKFKDIDVLMNASVDSIKSVSGIGNITAEHIYKYFKNEKN 566 >gi|308050127|ref|YP_003913693.1| DNA ligase, NAD-dependent [Ferrimonas balearica DSM 9799] gi|307632317|gb|ADN76619.1| DNA ligase, NAD-dependent [Ferrimonas balearica DSM 9799] Length = 685 Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 22/47 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L + F T++ + + + L ++ + + +A +Y F + Sbjct: 530 VGEATAANLARHFQTLEALMAADTDALIEVDDVGEVVAKHVYYFFRQ 576 >gi|86157121|ref|YP_463906.1| DNA ligase, NAD-dependent [Anaeromyxobacter dehalogenans 2CP-C] gi|123723230|sp|Q2INT9|DNLJ_ANADE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|85773632|gb|ABC80469.1| DNA ligase, NAD-dependent [Anaeromyxobacter dehalogenans 2CP-C] Length = 687 Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 2/60 (3%) Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 R L I +G L + FG + I + E L + + + A +I Sbjct: 524 RSTTLRRFLFALGIPQVGEATAATLARHFGDLARILDADEEALKGVRDVGPETASEIRAW 583 >gi|320007473|gb|ADW02323.1| DNA ligase, NAD-dependent [Streptomyces flavogriseus ATCC 33331] Length = 698 Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + G G R + + F ++ I+ + E L ++GI K+ A + + Sbjct: 521 GVRGTGRSMSRRIARHFASMDRIAAADVEALQQVDGIGKEKAAAVVRELQE 571 >gi|52144941|ref|YP_081888.1| NAD-dependent DNA ligase LigA [Bacillus cereus E33L] gi|81689708|sp|Q63GS3|DNLJ_BACCZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|51978410|gb|AAU19960.1| DNA ligase(NAD+) (NAD-dependent DNA ligase) [Bacillus cereus E33L] Length = 669 Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKTINEIGEKMAQSVVAYFDNED 564 >gi|326429912|gb|EGD75482.1| hypothetical protein PTSG_06556 [Salpingoeca sp. ATCC 50818] Length = 216 Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 6/67 (8%) Query: 549 RKKAAYSPLDEI---NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 R+ + L I G+G R L+ SF +++ + ++S + L + G + K++ Sbjct: 142 RQDLNLNLLTAIRLLPGVGEKRSMQLMHSFPSLQSLQQASKDELREMLGANGT---KLWK 198 Query: 606 HFHKNTS 612 H T Sbjct: 199 MLHGKTP 205 >gi|163856016|ref|YP_001630314.1| DNA ligase [Bordetella petrii DSM 12804] gi|254781264|sp|A9II69|DNLJ_BORPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|163259744|emb|CAP42045.1| DNA ligase [Bordetella petrii] Length = 697 Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 22/51 (43%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G R + + FG+++ I + E LA + +A I F + Sbjct: 546 GIRHVGETTARDVARHFGSIETIMDADEEALAGAPDVGPVVAGSIRRFFAE 596 >gi|163788595|ref|ZP_02183040.1| putative DNA ligase [Flavobacteriales bacterium ALC-1] gi|159875832|gb|EDP69891.1| putative DNA ligase [Flavobacteriales bacterium ALC-1] Length = 664 Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 7/45 (15%), Positives = 22/45 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + L + + ++ + ++ L +++ I ++IA + F Sbjct: 514 VGETVAKKLAKHYKSIDALMFATTLDLIAVDEIGERIAESVVEFF 558 >gi|172056504|ref|YP_001812964.1| DNA ligase, NAD-dependent [Exiguobacterium sibiricum 255-15] gi|254781332|sp|B1YJ17|DNLJ_EXIS2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|171989025|gb|ACB59947.1| DNA ligase, NAD-dependent [Exiguobacterium sibiricum 255-15] Length = 664 Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF-HKNT 611 +G LL + F ++ I+++ E + +I+GI KIA + +F H Sbjct: 511 VGQKAAYLLAERFDSLDGIAQAEYEDILAIDGIGSKIADSVTKYFEHPEA 560 >gi|326804258|ref|YP_004322076.1| DNA ligase (NAD+) [Aerococcus urinae ACS-120-V-Col10a] gi|326651204|gb|AEA01387.1| DNA ligase (NAD+) [Aerococcus urinae ACS-120-V-Col10a] Length = 677 Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 28/53 (52%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + +FG+++ I + E +++I+GI + IA + +F + Sbjct: 519 GIRHVGVKAARDIAMTFGSMEAIQTADREAISAIDGIGEIIADSVVEYFANDE 571 >gi|308375959|ref|ZP_07668156.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu007] gi|308344705|gb|EFP33556.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu007] Length = 614 Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 23/39 (58%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 I +GP R L FG++ I+ +S + LA++EG+ + Sbjct: 533 SIRHVGPTAARALATEFGSLDAIAAASTDQLAAVEGVGR 571 >gi|317128287|ref|YP_004094569.1| competence protein ComEA helix-hairpin-helix repeat protein [Bacillus cellulosilyticus DSM 2522] gi|315473235|gb|ADU29838.1| competence protein ComEA helix-hairpin-helix repeat protein [Bacillus cellulosilyticus DSM 2522] Length = 201 Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 10/57 (17%) Query: 556 PLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 L E+ GIGP + + ++ F G + I E + ++ GI +K I + Sbjct: 149 ELTELPGIGPAKAKAII-HFREENGHFQKI-----EDVVNVPGIGEKTLENIREYIR 199 >gi|315223028|ref|ZP_07864907.1| DNA ligase, NAD-dependent [Streptococcus anginosus F0211] gi|315187978|gb|EFU21714.1| DNA ligase, NAD-dependent [Streptococcus anginosus F0211] Length = 652 Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 31/55 (56%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G ++LL+ F ++ ++++ E +A+++ + IA + ++F + +H Sbjct: 502 GIRHVGSKASQILLKHFHDLEQLAKAEKEEIAALDSLGMVIAESLSSYFAQEGTH 556 >gi|163755823|ref|ZP_02162941.1| comEA protein-related protein [Kordia algicida OT-1] gi|161324344|gb|EDP95675.1| comEA protein-related protein [Kordia algicida OT-1] Length = 360 Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 6/61 (9%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSF--GTVK----MISRSSPETLASIEGISKKIACKIYN 605 S LD++ G+ P + + F G VK I++++ E L + GI +K++ +I N Sbjct: 198 TTKSELDKVYGLKPEVIEKIWKRFYVGEVKITKIDINKATVEELRKVYGIGEKLSVRIVN 257 Query: 606 H 606 + Sbjct: 258 Y 258 >gi|124515701|gb|EAY57210.1| transcription termination factor (NusA) [Leptospirillum rubarum] Length = 452 Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 7/69 (10%) Query: 554 YSPL--DEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIY----NH 606 S L +++ G+G +L + F T++ I+ +S E ++++ K A K+ + Sbjct: 373 TSLLRIEDLPGVGGNMAEILRDAGFDTLQAIAHASVEAISALPKFGPKTAAKLIQTAQDF 432 Query: 607 FHKNTSHTP 615 +++ TP Sbjct: 433 LGESSGETP 441 >gi|111225864|ref|YP_716658.1| DNA integrity scanning protein DisA [Frankia alni ACN14a] gi|123337921|sp|Q0RBN2|DISA_FRAAA RecName: Full=DNA integrity scanning protein disA gi|111153396|emb|CAJ65152.1| nucleic-acid-binding protein protein, containing HHH domain [Frankia alni ACN14a] Length = 359 Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 19/38 (50%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L+ FGT++ + + + L +++G+ + A + Sbjct: 309 RLVDHFGTLQKLLAAGVDDLQAVDGVGETRARAVREGL 346 >gi|86742934|ref|YP_483334.1| DNA integrity scanning protein DisA [Frankia sp. CcI3] gi|119365932|sp|Q2J537|DISA_FRASC RecName: Full=DNA integrity scanning protein disA gi|86569796|gb|ABD13605.1| protein of unknown function DUF147 [Frankia sp. CcI3] Length = 359 Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 19/38 (50%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L+ FGT++ + + + L +++G+ + A + Sbjct: 309 RLVDHFGTLQKLLAAGVDDLQAVDGVGETRARAVREGL 346 >gi|325961775|ref|YP_004239681.1| nucleic-acid-binding protein (contains the HHH domain) [Arthrobacter phenanthrenivorans Sphe3] gi|323467862|gb|ADX71547.1| putative nucleic-acid-binding protein (contains the HHH domain) [Arthrobacter phenanthrenivorans Sphe3] Length = 358 Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 3/59 (5%) Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 R S L + L+ FG ++ + ++ + L +++GI + A + Sbjct: 290 RGYRLLSGLKAVP---KAVADRLVDHFGGLQFLMAATIDDLMTVDGIGDQRARTVREGL 345 >gi|220911123|ref|YP_002486432.1| DNA integrity scanning protein DisA [Arthrobacter chlorophenolicus A6] gi|219858001|gb|ACL38343.1| protein of unknown function DUF147 [Arthrobacter chlorophenolicus A6] Length = 358 Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 3/59 (5%) Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 R S L + L+ FG ++ + ++ + L +++GI + A + Sbjct: 290 RGYRLLSGLKAVP---KAVADRLVDHFGGLQFLMAATIDDLMTVDGIGDQRARTVREGL 345 >gi|269302395|gb|ACZ32495.1| DNA polymerase I [Chlamydophila pneumoniae LPCoLN] Length = 870 Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 7/45 (15%) Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 D I G+ GP + LL+ FG+V+ + E L +++G+S+ + Sbjct: 185 DNIPGVPGCGPKKAAALLKQFGSVEGL----LENLDAVKGLSQTM 225 >gi|254441463|ref|ZP_05054956.1| helicase, RecD/TraA family [Octadecabacter antarcticus 307] gi|198251541|gb|EDY75856.1| helicase, RecD/TraA family [Octadecabacter antarcticus 307] Length = 729 Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 10/59 (16%) Query: 555 SPLDEIN---------GIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKI 603 S L+ I GIGP+ + +++ FG V + + PE L +EGI K A KI Sbjct: 85 SSLEGIEKYLGSGMIRGIGPVYAKRMVKKFGKDVFDLIEAEPERLREVEGIGPKRADKI 143 >gi|296219607|ref|XP_002755959.1| PREDICTED: DNA repair endonuclease XPF [Callithrix jacchus] Length = 916 Score = 47.0 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 L ++ G+ R L+ ++ ++ S E L SI G + A ++Y+ H + + Sbjct: 852 LLKMPGVNAKNCRSLMHHVKSIAELATLSQEELTSILG-NAANAKQLYDFIHTSYAE 907 >gi|193214336|ref|YP_001995535.1| DNA protecting protein DprA [Chloroherpeton thalassium ATCC 35110] gi|193087813|gb|ACF13088.1| DNA protecting protein DprA [Chloroherpeton thalassium ATCC 35110] Length = 386 Score = 47.0 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 26/48 (54%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 L +I IG R R LL F + + + +SPE + + G S+K+ +I Sbjct: 18 ILSQIPSIGSHRLRSLLAEFSSHREVFSASPERIRQLAGFSEKLGAEI 65 >gi|4235372|gb|AAD13189.1| NAD-dependent DNA ligase [Thermus aquaticus] Length = 527 Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 21/50 (42%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 + G+G + R L FG + + + L +EG+ + A I N Sbjct: 463 GLPGVGEVLARNLALRFGHMDRLLEAGLGDLLEVEGVGELTARAILNTLK 512 >gi|324324305|gb|ADY19565.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis serovar finitimus YBT-020] Length = 669 Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVTYFDNED 564 >gi|284006788|emb|CBA72055.1| DNA ligase [Arsenophonus nasoniae] Length = 670 Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 6/65 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I +G L + T+ + + E+L ++ + + +A I Sbjct: 502 KSKQTTLARFIYALGIREVGEATASNLAAHYTTLTSLMAADIESLKKVQDVGEIVAKHIV 561 Query: 605 NHFHK 609 N FH+ Sbjct: 562 NFFHE 566 >gi|255067475|ref|ZP_05319330.1| DNA topoisomerase [Neisseria sicca ATCC 29256] gi|255048270|gb|EET43734.1| DNA topoisomerase [Neisseria sicca ATCC 29256] Length = 104 Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 18/67 (26%) Query: 555 SPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 S L+ + GIGP + + ++ F +V E L +++GI I++ Sbjct: 34 SELEALPGIGPAKAKAIVDYRQQHGAFKSV--------EELKNVKGIG----EGIFSKLK 81 Query: 609 KNTSHTP 615 + TP Sbjct: 82 AEATVTP 88 Score = 38.2 bits (87), Expect = 4.7, Method: Composition-based stats. Identities = 8/27 (29%), Positives = 14/27 (51%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +SP L ++ GI A I ++ Sbjct: 27 NINTASPSELEALPGIGPAKAKAIVDY 53 >gi|229028145|ref|ZP_04184287.1| DNA ligase [Bacillus cereus AH1271] gi|228733163|gb|EEL84003.1| DNA ligase [Bacillus cereus AH1271] Length = 669 Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVTYFDNED 564 >gi|229194680|ref|ZP_04321473.1| DNA ligase [Bacillus cereus m1293] gi|228588783|gb|EEK46808.1| DNA ligase [Bacillus cereus m1293] Length = 669 Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVTYFDNED 564 >gi|196045221|ref|ZP_03112453.1| DNA ligase, NAD-dependent [Bacillus cereus 03BB108] gi|196023805|gb|EDX62480.1| DNA ligase, NAD-dependent [Bacillus cereus 03BB108] Length = 669 Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVTYFDNED 564 >gi|313203539|ref|YP_004042196.1| DNA ligase, nad-dependent [Paludibacter propionicigenes WB4] gi|312442855|gb|ADQ79211.1| DNA ligase, NAD-dependent [Paludibacter propionicigenes WB4] Length = 676 Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 24/45 (53%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + L +F ++ + ++S + L +++ I +IA + +F Sbjct: 513 VGETIAKKLAYAFKNIEALEQASYDELVAVDEIGGRIAQSVVAYF 557 >gi|268323600|emb|CBH37188.1| DNA ligase [uncultured archaeon] Length = 667 Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 3/65 (4%) Query: 548 RRKKAAYSPL---DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 + K S L I +G LL +F ++ + +S + L I I ++A I Sbjct: 502 KSKHTTLSRLIYALGIRHVGAHTASLLADNFSELESLRNASYDDLVHIPEIGPEVAKSII 561 Query: 605 NHFHK 609 F + Sbjct: 562 LFFKQ 566 >gi|2231821|gb|AAB62092.1| DNA polymerase I [Geobacillus stearothermophilus] Length = 877 Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 10/54 (18%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 + GIG LL+ FGTV+ + +S + ++G K+ ++ Sbjct: 194 GVPGIGEKTAVKLLKQFGTVENVL-ASIDE---VKG------EKVKEKLRQHRD 237 >gi|88803633|ref|ZP_01119157.1| putative DNA ligase [Polaribacter irgensii 23-P] gi|88780366|gb|EAR11547.1| putative DNA ligase [Polaribacter irgensii 23-P] Length = 665 Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 21/44 (47%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 +G + L + F ++ + + E L S++ I +IA I + Sbjct: 515 VGETVAKKLAKYFKSIDNLMHAEFEVLISVDEIGDRIAQSIIDF 558 >gi|307706499|ref|ZP_07643306.1| DNA ligase, NAD-dependent [Streptococcus mitis SK321] gi|307617954|gb|EFN97114.1| DNA ligase, NAD-dependent [Streptococcus mitis SK321] Length = 652 Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 29/55 (52%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G +LLLQ F +++ ++++ + +ASIE + IA + +F S Sbjct: 502 GIRHVGSKASQLLLQHFHSIENLAQADSDEVASIESLGSVIAKSLQTYFATEGSE 556 >gi|288572809|ref|ZP_06391166.1| DNA ligase, NAD-dependent [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568550|gb|EFC90107.1| DNA ligase, NAD-dependent [Dethiosulfovibrio peptidovorans DSM 11002] Length = 674 Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 27/49 (55%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G LL++ +G+++ + R+ PE L SIEG+ IA + F Sbjct: 512 GIRHVGKGVAELLVERYGSMEALRRADPEELGSIEGVGPAIAASLEAFF 560 >gi|260893633|ref|YP_003239730.1| DNA-directed DNA polymerase [Ammonifex degensii KC4] gi|260865774|gb|ACX52880.1| DNA-directed DNA polymerase [Ammonifex degensii KC4] Length = 576 Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 9/56 (16%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS------IEGISKKIACKIYN 605 L ++ GIGP +LL + G VK + + E LA + GI K I Sbjct: 92 ELLQVPGIGPKTAKLLYERLG-VKSL--AELEQLAKEGKLKGLPGIGAKTEENIRR 144 Score = 41.6 bits (96), Expect = 0.37, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 10/65 (15%) Query: 552 AAYSPLDEINGIGP---LRKRLLLQSFGTVKMISRSSPE------TLASIEGISKKIACK 602 AA L +I GIG + +L + GT++ + L + GI K A Sbjct: 48 AARGELTKIPGIGKELARKIEEILAT-GTLQKYEELKRKVPPGLVELLQVPGIGPKTAKL 106 Query: 603 IYNHF 607 +Y Sbjct: 107 LYERL 111 >gi|126179861|ref|YP_001047826.1| DNA repair and recombination protein RadA [Methanoculleus marisnigri JR1] gi|166218763|sp|A3CWU4|RADA_METMJ RecName: Full=DNA repair and recombination protein radA gi|125862655|gb|ABN57844.1| DNA repair and recombination protein RadA [Methanoculleus marisnigri JR1] Length = 324 Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKI 603 L+++ G+G L ++ +GTV+ ++ ++ LA I + A K+ Sbjct: 6 LEDLPGVGATTAEKLREAGYGTVESVATATTSDLAEAAEIGEATAKKV 53 >gi|77919807|ref|YP_357622.1| DNA ligase, NAD-dependent [Pelobacter carbinolicus DSM 2380] gi|123756590|sp|Q3A2F5|DNLJ_PELCD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|77545890|gb|ABA89452.1| DNA ligase, NAD-dependent [Pelobacter carbinolicus DSM 2380] Length = 671 Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 28/54 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G LL + FG++ +S ++ E L +I I ++A + + F K+ + Sbjct: 516 GIRHVGEHLASLLARQFGSLDALSHATREELLAIHEIGPQVADSVTDFFAKSRN 569 >gi|22536945|ref|NP_687796.1| competence protein CelA [Streptococcus agalactiae 2603V/R] gi|25010856|ref|NP_735251.1| hypothetical protein gbs0801 [Streptococcus agalactiae NEM316] gi|77411344|ref|ZP_00787692.1| competence protein CelA [Streptococcus agalactiae CJB111] gi|77413586|ref|ZP_00789773.1| competence protein CelA [Streptococcus agalactiae 515] gi|22533798|gb|AAM99668.1|AE014227_12 competence protein CelA [Streptococcus agalactiae 2603V/R] gi|23095235|emb|CAD46445.1| Unknown [Streptococcus agalactiae NEM316] gi|77160352|gb|EAO71476.1| competence protein CelA [Streptococcus agalactiae 515] gi|77162604|gb|EAO73567.1| competence protein CelA [Streptococcus agalactiae CJB111] Length = 217 Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 KA S L I+G+G R + +L + + + L ++ GI +K K+ Sbjct: 160 KADLSSLQTISGVGAKRAQDILDYRDSQGGFK--TIDDLKNVSGIGEKTLEKLRQ 212 >gi|229171138|ref|ZP_04298732.1| DNA ligase [Bacillus cereus MM3] gi|228612316|gb|EEK69544.1| DNA ligase [Bacillus cereus MM3] Length = 669 Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVTYFDNED 564 >gi|42779416|ref|NP_976663.1| NAD-dependent DNA ligase LigA [Bacillus cereus ATCC 10987] gi|81411242|sp|Q73EM3|DNLJ_BACC1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|42735332|gb|AAS39271.1| DNA ligase, NAD-dependent [Bacillus cereus ATCC 10987] Length = 669 Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVTYFDNED 564 >gi|331268387|ref|YP_004394879.1| hypothetical protein CbC4_0202 [Clostridium botulinum BKT015925] gi|329124937|gb|AEB74882.1| protein of unknown function DUF147 [Clostridium botulinum BKT015925] Length = 354 Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L +I I L+ +F +K + +S E L ++EGI + A I N + Sbjct: 291 LSKIPRIPVNVIENLVNNFKELKEVMEASYEELDNVEGIGEARAKAIKNGLRR 343 >gi|300724062|ref|YP_003713378.1| DNA ligase [Xenorhabdus nematophila ATCC 19061] gi|297630595|emb|CBJ91260.1| DNA ligase [Xenorhabdus nematophila ATCC 19061] Length = 658 Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 24/47 (51%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L+ FGT++ + + E L +++ + +A + N F++ Sbjct: 506 VGETTAANLVSHFGTLEKLQAADTEALIAVQDVGGIVASHVVNFFNE 552 >gi|48249475|gb|AAT40982.1| putative DNA ligase [Xenorhabdus nematophila] Length = 168 Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 24/47 (51%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L+ FGT++ + + E L +++ + +A + N F++ Sbjct: 16 VGETTAANLVSHFGTLEKLQAADTEALIAVQDVGGIVASHVVNFFNE 62 >gi|253681837|ref|ZP_04862634.1| DNA integrity scanning protein DisA [Clostridium botulinum D str. 1873] gi|253561549|gb|EES91001.1| DNA integrity scanning protein DisA [Clostridium botulinum D str. 1873] Length = 354 Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L +I I L+ +F +K + +S E L ++EGI + A I N + Sbjct: 291 LSKIPRIPVNVIENLVNNFKELKEVMEASYEELDNVEGIGEARAKAIKNGLRR 343 >gi|25144926|ref|NP_492652.2| hypothetical protein F10G8.7 [Caenorhabditis elegans] gi|21615452|emb|CAB02283.2| C. elegans protein F10G8.7, confirmed by transcript evidence [Caenorhabditis elegans] Length = 262 Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 22/39 (56%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 LL FGT++ IS +S ++++ G+ A +++ H Sbjct: 215 RLLFHFGTLQAISTASETSISACPGVGPIKAKNLHSFLH 253 >gi|300774281|ref|ZP_07084145.1| crossover junction ATP-dependent DNA helicase RuvA [Chryseobacterium gleum ATCC 35910] gi|300506925|gb|EFK38059.1| crossover junction ATP-dependent DNA helicase RuvA [Chryseobacterium gleum ATCC 35910] Length = 194 Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 10/87 (11%) Query: 523 RDPILYFIQRL-RDEAHR-FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580 FIQ++ R++AH F + R +K ++ L +NG+G + +LL + ++ Sbjct: 41 NQQTFLFIQQIIREDAHLLF--GFN-TRSEKEMFNLLISVNGVGAVSALILLSTL-SLDE 96 Query: 581 ISRS----SPETLASIEGISKKIACKI 603 I+ + + + +GI K A +I Sbjct: 97 IASAILSGNSALIQKAKGIGAKTAERI 123 >gi|304411949|ref|ZP_07393560.1| DNA ligase, NAD-dependent [Shewanella baltica OS183] gi|307303283|ref|ZP_07583038.1| DNA ligase, NAD-dependent [Shewanella baltica BA175] gi|304349809|gb|EFM14216.1| DNA ligase, NAD-dependent [Shewanella baltica OS183] gi|306913643|gb|EFN44065.1| DNA ligase, NAD-dependent [Shewanella baltica BA175] Length = 685 Score = 46.6 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 19/45 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G L F ++ + ++ E L +E + +A + + F Sbjct: 534 VGEATAANLAAHFASLDALRVATVEQLTEVEDVGTVVAQHVAHFF 578 >gi|260774893|ref|ZP_05883794.1| DNA ligase [Vibrio coralliilyticus ATCC BAA-450] gi|260609148|gb|EEX35306.1| DNA ligase [Vibrio coralliilyticus ATCC BAA-450] Length = 669 Score = 46.6 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 21/52 (40%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L Q F T+ + ++ E L + I +A + F ++ + Sbjct: 521 VGEATAANLAQYFKTLDAVKAANHEQLIEVSDIGDIVASHVIAFFAQDKNQQ 572 >gi|94970368|ref|YP_592416.1| DNA processing protein DprA, putative [Candidatus Koribacter versatilis Ellin345] gi|94552418|gb|ABF42342.1| DNA protecting protein DprA [Candidatus Koribacter versatilis Ellin345] Length = 385 Score = 46.6 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 +GP R R L++ FG V+ I R+S L + G+ A I Sbjct: 22 PQLGPTRGRRLVEHFGDVERIFRASLTELEA-SGLPAASAQSI 63 >gi|77406947|ref|ZP_00783967.1| competence protein CelA [Streptococcus agalactiae H36B] gi|77174444|gb|EAO77293.1| competence protein CelA [Streptococcus agalactiae H36B] Length = 178 Score = 46.6 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 KA S L I+G+G R + +L + + + L ++ GI +K K+ Sbjct: 121 KADLSSLQTISGVGAKRAQDILDYRDSQGGFK--TIDDLKNVSGIGEKTLEKLRQ 173 >gi|298385661|ref|ZP_06995219.1| DNA ligase, NAD-dependent [Bacteroides sp. 1_1_14] gi|298261802|gb|EFI04668.1| DNA ligase, NAD-dependent [Bacteroides sp. 1_1_14] Length = 666 Score = 46.6 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 27/50 (54%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + + +SFG + + ++ E L SI+ I +KIA I +F ++ Sbjct: 516 VGETVAKKIAKSFGDIDELQQADLEKLISIDEIGEKIARSILLYFSNESN 565 >gi|256827248|ref|YP_003151207.1| DNA polymerase I [Cryptobacterium curtum DSM 15641] gi|256583391|gb|ACU94525.1| DNA polymerase I [Cryptobacterium curtum DSM 15641] Length = 885 Score = 46.6 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 + GIGP LLQ FG+++ I + L Sbjct: 193 GVPGIGPKTAAKLLQRFGSIEGIYE-HLDELK 223 >gi|294102358|ref|YP_003554216.1| DNA ligase, NAD-dependent [Aminobacterium colombiense DSM 12261] gi|293617338|gb|ADE57492.1| DNA ligase, NAD-dependent [Aminobacterium colombiense DSM 12261] Length = 684 Score = 46.6 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 3/66 (4%) Query: 550 KKAAYSPL---DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 K S L I +G +L F ++ +S + E L+SI+G+ KIA I Sbjct: 503 KNRFLSNLITALGIRLVGKKVAEILADRFHSLDALSSAQEEGLSSIDGVGPKIAASIKAF 562 Query: 607 FHKNTS 612 F + Sbjct: 563 FDDEAN 568 >gi|313884927|ref|ZP_07818679.1| DNA repair protein RadC [Eremococcus coleocola ACS-139-V-Col8] gi|312619618|gb|EFR31055.1| DNA repair protein RadC [Eremococcus coleocola ACS-139-V-Col8] Length = 229 Score = 46.6 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 17/37 (45%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 LL+ F ++ + ++S E L GI A +I Sbjct: 53 LLKRFESLHELGQASIEELTQTPGIGPVKAIEIIAAL 89 >gi|294506892|ref|YP_003570950.1| NAD-dependent DNA ligase [Salinibacter ruber M8] gi|294343220|emb|CBH23998.1| NAD-dependent DNA ligase [Salinibacter ruber M8] Length = 691 Score = 46.6 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 25/54 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G RLL Q F T+ + + + L +I+ I ++A I F + + Sbjct: 534 GIPLVGSATARLLAQHFDTLDALVDADEDALTTIDDIGPEVAHSIATFFADDAN 587 >gi|297570375|ref|YP_003691719.1| helicase, RecD/TraA family [Desulfurivibrio alkaliphilus AHT2] gi|296926290|gb|ADH87100.1| helicase, RecD/TraA family [Desulfurivibrio alkaliphilus AHT2] Length = 822 Score = 46.6 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 5/64 (7%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFH 608 K S L I G+GP R +++ FG T+ I + L + GI++ I + Sbjct: 85 KYLGSGL--IKGVGPKTARKIVRHFGDQTLD-IFEQEIDRLTEVPGIAEAKLKSISAAWQ 141 Query: 609 KNTS 612 ++ + Sbjct: 142 EHRA 145 >gi|257466592|ref|ZP_05630903.1| NAD-dependent DNA ligase [Fusobacterium gonidiaformans ATCC 25563] gi|315917747|ref|ZP_07913987.1| DNA ligase [Fusobacterium gonidiaformans ATCC 25563] gi|313691622|gb|EFS28457.1| DNA ligase [Fusobacterium gonidiaformans ATCC 25563] Length = 676 Score = 46.6 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 24/52 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +G + +LL + + + + E L IEGI +K+A I + F Sbjct: 516 GIPFVGKVAAKLLAKESKNIFKLQTMTEEELQQIEGIGEKMARSIVDFFQNE 567 >gi|224369818|ref|YP_002603982.1| DprA [Desulfobacterium autotrophicum HRM2] gi|223692535|gb|ACN15818.1| DprA [Desulfobacterium autotrophicum HRM2] Length = 372 Score = 46.6 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 21/45 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 I GIG + L+ F T + I + L +I G+S+K I Sbjct: 15 SIPGIGNHLYKRLINRFKTPENILAAKAAELKTIRGMSQKAITGI 59 >gi|83816597|ref|YP_445022.1| DNA ligase, NAD-dependent [Salinibacter ruber DSM 13855] gi|123739757|sp|Q2S459|DNLJ_SALRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|83757991|gb|ABC46104.1| DNA ligase, NAD-dependent [Salinibacter ruber DSM 13855] Length = 690 Score = 46.6 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 25/54 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G RLL Q F T+ + + + L +I+ I ++A I F + + Sbjct: 534 GIPLVGSATARLLAQHFDTLDALVDADEDALTTIDDIGPEVAHSIATFFADDAN 587 >gi|125973550|ref|YP_001037460.1| DNA ligase, NAD-dependent [Clostridium thermocellum ATCC 27405] gi|256003369|ref|ZP_05428360.1| DNA ligase, NAD-dependent [Clostridium thermocellum DSM 2360] gi|281417755|ref|ZP_06248775.1| DNA ligase, NAD-dependent [Clostridium thermocellum JW20] gi|166215580|sp|A3DE88|DNLJ_CLOTH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|125713775|gb|ABN52267.1| DNA ligase, NAD-dependent [Clostridium thermocellum ATCC 27405] gi|255992659|gb|EEU02750.1| DNA ligase, NAD-dependent [Clostridium thermocellum DSM 2360] gi|281409157|gb|EFB39415.1| DNA ligase, NAD-dependent [Clostridium thermocellum JW20] gi|316940208|gb|ADU74242.1| DNA ligase, NAD-dependent [Clostridium thermocellum DSM 1313] Length = 663 Score = 46.6 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 26/54 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I IG +LL ++F ++ + +S E + +I +K+A + F + + Sbjct: 511 GIRHIGLRAAQLLSENFESLDALMNASAEDIMAIPEFGEKMAKSVEQFFRQKQN 564 >gi|300717845|ref|YP_003742648.1| DNA ligase [Erwinia billingiae Eb661] gi|299063681|emb|CAX60801.1| DNA ligase [Erwinia billingiae Eb661] Length = 672 Score = 46.6 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 6/68 (8%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA + L I+ +G L FG+++ I + + L +++ + +A + Sbjct: 502 KAKTTTLARFLYSLGISEVGEATAANLAAHFGSLEKIMAADLDALIAVQDVGTVVASHLR 561 Query: 605 NHFHKNTS 612 N + ++ Sbjct: 562 NFMDEESN 569 >gi|297538570|ref|YP_003674339.1| DNA ligase, NAD-dependent [Methylotenera sp. 301] gi|297257917|gb|ADI29762.1| DNA ligase, NAD-dependent [Methylotenera sp. 301] Length = 682 Score = 46.6 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 20/45 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + L + FG + + ++ +L ++ + +A I N Sbjct: 534 VGEATAKDLAKHFGNLSALMQADAASLLTVNDVGPVVAESISNFL 578 Score = 39.3 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 13/71 (18%) Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLL----LQSFGTVKMISRSSPETLASIEGIS 596 AIT RR +I G+G L L T+ I + + ETL++++ ++ Sbjct: 453 AITHFASRRA-------MDIEGLGEKLVDQLVEANLVH--TLADIYQLNLETLSNLDRMA 503 Query: 597 KKIACKIYNHF 607 K A I + Sbjct: 504 TKSAQNILDAL 514 >gi|210620507|ref|ZP_03292083.1| hypothetical protein CLOHIR_00026 [Clostridium hiranonis DSM 13275] gi|210155317|gb|EEA86323.1| hypothetical protein CLOHIR_00026 [Clostridium hiranonis DSM 13275] Length = 739 Score = 46.6 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I GIG ++ FG T+ +I + PE L I+GI KK +I + ++ Sbjct: 88 IKGIGEKMANKIIDKFGVDTLDVIQNA-PERLQEIDGIGKKKVAQIVESYEED 139 >gi|157371681|ref|YP_001479670.1| NAD-dependent DNA ligase LigA [Serratia proteamaculans 568] gi|190359284|sp|A8GHF2|DNLJ_SERP5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157323445|gb|ABV42542.1| DNA ligase, NAD-dependent [Serratia proteamaculans 568] Length = 673 Score = 46.6 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 18/48 (37%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +G L FGT+ + + E L + + + +A + + Sbjct: 520 VGEATAANLAAHFGTLDKLLAADIEALKEVPEVGEIVAKHTRHFLDEE 567 >gi|229165072|ref|ZP_04292867.1| DNA integrity scanning protein disA [Bacillus cereus AH621] gi|228618335|gb|EEK75365.1| DNA integrity scanning protein disA [Bacillus cereus AH621] Length = 347 Score = 46.6 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 20/42 (47%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L+ F T++ + R++ L +EGI + A KI + Sbjct: 295 IENLINRFKTLQGVCRATINELDDVEGIGEVRAKKIREGLKR 336 >gi|255691906|ref|ZP_05415581.1| DNA ligase, NAD-dependent [Bacteroides finegoldii DSM 17565] gi|260622459|gb|EEX45330.1| DNA ligase, NAD-dependent [Bacteroides finegoldii DSM 17565] Length = 666 Score = 46.6 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 25/50 (50%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + + +SF + + R+ E L SI+ I +KIA I +F + Sbjct: 516 VGETVAKKIAKSFENIDELKRADLERLVSIDEIGEKIAQSILTYFANEAN 565 >gi|229815888|ref|ZP_04446212.1| hypothetical protein COLINT_02944 [Collinsella intestinalis DSM 13280] gi|229808583|gb|EEP44361.1| hypothetical protein COLINT_02944 [Collinsella intestinalis DSM 13280] Length = 752 Score = 46.6 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 24/49 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G +L Q F T+ ++ +S E +A+ EGI KIA + Sbjct: 579 GIRHVGKSVAEVLAQRFLTIDALAAASEEDIAACEGIGPKIAASVREFL 627 >gi|291557560|emb|CBL34677.1| DNA repair proteins [Eubacterium siraeum V10Sc8a] Length = 228 Score = 46.6 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 17/34 (50%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 L+ FG++ + +S L +EG+ + A I Sbjct: 46 RLIDRFGSLSGVFSASENELCEVEGVGRSTAQMI 79 >gi|289522347|ref|ZP_06439201.1| late competence protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504183|gb|EFD25347.1| late competence protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 255 Score = 46.6 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 8/50 (16%) Query: 557 LDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKI 603 L + GIGP + +L G + S E L ++GI K KI Sbjct: 202 LQSLPGIGPKTAQAILSYREDKGGFR-----SVEELLEVKGIGPKKMEKI 246 >gi|148704699|gb|EDL36646.1| mCG145564 [Mus musculus] Length = 510 Score = 46.6 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 6/61 (9%) Query: 554 YSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 S L+ I GI + + F +VK ++ SSPE +++ ++ + A +IY + Sbjct: 417 TSKLEALPFYLSIPGISYITALNMCHQFSSVKKMANSSPEEISTCAQVNHQKAEEIYKYI 476 Query: 608 H 608 H Sbjct: 477 H 477 >gi|309800389|ref|ZP_07694554.1| DNA ligase [Streptococcus infantis SK1302] gi|308115980|gb|EFO53491.1| DNA ligase [Streptococcus infantis SK1302] Length = 240 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 32/55 (58%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G +LLLQ+F +++ +++++PE +ASIE + IA + +F S Sbjct: 119 GIRHVGSKASQLLLQNFHSIESLAQANPEEIASIESLGSVIAQSLQTYFATEGSE 173 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 8/61 (13%) Query: 559 EINGIGPLRKRLLLQSF-----GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I+G+GP + L F V I + E L ++GI +K A K+Y + + Sbjct: 53 NISGLGPSIVKKL---FAADLVKDVADIYHLTVEDLLLLDGIKEKSAQKLYQAIQASKEN 109 Query: 614 T 614 + Sbjct: 110 S 110 >gi|116511836|ref|YP_809052.1| DNA repair protein [Lactococcus lactis subsp. cremoris SK11] gi|116107490|gb|ABJ72630.1| DNA repair protein [Lactococcus lactis subsp. cremoris SK11] Length = 217 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 12/30 (40%), Positives = 16/30 (53%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIA 600 LLQ FGT+ ++S L I GI + A Sbjct: 41 LLQHFGTLDNFRKASISELKEISGIGQTKA 70 >gi|254517447|ref|ZP_05129503.1| DNA integrity scanning protein disA [Clostridium sp. 7_2_43FAA] gi|226911196|gb|EEH96397.1| DNA integrity scanning protein disA [Clostridium sp. 7_2_43FAA] Length = 354 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 19/42 (45%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L++ F +K + + + L ++GI + A I N + Sbjct: 302 IENLVKHFKELKYVIEADTDELDKVDGIGEARAKAIKNGLRR 343 >gi|160943191|ref|ZP_02090427.1| hypothetical protein FAEPRAM212_00677 [Faecalibacterium prausnitzii M21/2] gi|158445430|gb|EDP22433.1| hypothetical protein FAEPRAM212_00677 [Faecalibacterium prausnitzii M21/2] gi|295105228|emb|CBL02772.1| DNA repair proteins [Faecalibacterium prausnitzii SL3/3] Length = 239 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 24/82 (29%) Query: 543 TTHRKRRKKAAYS-PLDEI-------------------NGIGPLRKRLLLQSFGTVKMIS 582 HR+R ++ S LD + NGI L+ FG + Sbjct: 8 KGHRQRMRERVQSYGLDSLAEHEALEYVLYLTNAQRDTNGI----AHDLIDRFGDFAAVL 63 Query: 583 RSSPETLASIEGISKKIACKIY 604 +S E L ++EG+ A ++ Sbjct: 64 EASEEELCTVEGVGPSTARMLH 85 >gi|229027931|ref|ZP_04184084.1| DNA integrity scanning protein disA [Bacillus cereus AH1271] gi|228733319|gb|EEL84148.1| DNA integrity scanning protein disA [Bacillus cereus AH1271] Length = 357 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%) Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 R S + + PL L+ F T++ + R++ L +EGI + A KI Sbjct: 289 RGYRITSKISRVP---PLIIENLINRFKTLQGVCRATINELDDVEGIGEVRAKKIREGLK 345 Query: 609 K 609 + Sbjct: 346 R 346 >gi|229159257|ref|ZP_04287281.1| DNA integrity scanning protein disA [Bacillus cereus R309803] gi|228624149|gb|EEK80951.1| DNA integrity scanning protein disA [Bacillus cereus R309803] Length = 357 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%) Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 R S + + PL L+ F T++ + R++ L +EGI + A KI Sbjct: 289 RGYRITSKISRVP---PLIIENLINRFKTLQGVCRATINELDDVEGIGEVRAKKIREGLK 345 Query: 609 K 609 + Sbjct: 346 R 346 >gi|206972259|ref|ZP_03233206.1| putative DNA-binding protein [Bacillus cereus AH1134] gi|218231574|ref|YP_002364933.1| DNA integrity scanning protein DisA [Bacillus cereus B4264] gi|228919034|ref|ZP_04082413.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228950632|ref|ZP_04112766.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229067849|ref|ZP_04201166.1| DNA integrity scanning protein disA [Bacillus cereus F65185] gi|229077375|ref|ZP_04210039.1| DNA integrity scanning protein disA [Bacillus cereus Rock4-2] gi|229148493|ref|ZP_04276749.1| DNA integrity scanning protein disA [Bacillus cereus m1550] gi|229176684|ref|ZP_04304088.1| DNA integrity scanning protein disA [Bacillus cereus 172560W] gi|226729433|sp|B7HJ22|DISA_BACC4 RecName: Full=DNA integrity scanning protein disA gi|206732833|gb|EDZ50008.1| putative DNA-binding protein [Bacillus cereus AH1134] gi|218159531|gb|ACK59523.1| putative DNA-binding protein [Bacillus cereus B4264] gi|228606727|gb|EEK64144.1| DNA integrity scanning protein disA [Bacillus cereus 172560W] gi|228634909|gb|EEK91482.1| DNA integrity scanning protein disA [Bacillus cereus m1550] gi|228705934|gb|EEL58256.1| DNA integrity scanning protein disA [Bacillus cereus Rock4-2] gi|228715208|gb|EEL67067.1| DNA integrity scanning protein disA [Bacillus cereus F65185] gi|228808983|gb|EEM55468.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228840559|gb|EEM85821.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 357 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%) Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 R S + + PL L+ F T++ + R++ L +EGI + A KI Sbjct: 289 RGYRITSKISRVP---PLIIENLINRFKTLQGVCRATINELDDVEGIGEVRAKKIREGLK 345 Query: 609 K 609 + Sbjct: 346 R 346 >gi|160947381|ref|ZP_02094548.1| hypothetical protein PEPMIC_01315 [Parvimonas micra ATCC 33270] gi|158446515|gb|EDP23510.1| hypothetical protein PEPMIC_01315 [Parvimonas micra ATCC 33270] Length = 662 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 21/52 (40%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +G + L + + + + ++ E L I + +A I+ F+ Sbjct: 507 GIKNVGIKTAKDLAKKYINLDNLRETTVEELLQINDVGDVVANSIFEFFNDE 558 >gi|30018354|ref|NP_829985.1| DNA integrity scanning protein DisA [Bacillus cereus ATCC 14579] gi|228956525|ref|ZP_04118321.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar pakistani str. T13001] gi|229040989|ref|ZP_04189752.1| DNA integrity scanning protein disA [Bacillus cereus AH676] gi|229107770|ref|ZP_04237406.1| DNA integrity scanning protein disA [Bacillus cereus Rock1-15] gi|229125601|ref|ZP_04254633.1| DNA integrity scanning protein disA [Bacillus cereus BDRD-Cer4] gi|229142890|ref|ZP_04271331.1| DNA integrity scanning protein disA [Bacillus cereus BDRD-ST24] gi|296500918|ref|YP_003662618.1| DNA integrity scanning protein DisA [Bacillus thuringiensis BMB171] gi|81436113|sp|Q81J64|DISA_BACCR RecName: Full=DNA integrity scanning protein disA gi|29893894|gb|AAP07186.1| DNA-binding protein [Bacillus cereus ATCC 14579] gi|228640511|gb|EEK96900.1| DNA integrity scanning protein disA [Bacillus cereus BDRD-ST24] gi|228657793|gb|EEL13599.1| DNA integrity scanning protein disA [Bacillus cereus BDRD-Cer4] gi|228675619|gb|EEL30827.1| DNA integrity scanning protein disA [Bacillus cereus Rock1-15] gi|228727286|gb|EEL78480.1| DNA integrity scanning protein disA [Bacillus cereus AH676] gi|228803090|gb|EEM49912.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar pakistani str. T13001] gi|296321970|gb|ADH04898.1| DNA integrity scanning protein DisA [Bacillus thuringiensis BMB171] Length = 357 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%) Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 R S + + PL L+ F T++ + R++ L +EGI + A KI Sbjct: 289 RGYRITSKISRVP---PLIIENLINRFKTLQGVCRATINELDDVEGIGEVRAKKIREGLK 345 Query: 609 K 609 + Sbjct: 346 R 346 >gi|30260274|ref|NP_842651.1| DNA integrity scanning protein DisA [Bacillus anthracis str. Ames] gi|42779164|ref|NP_976411.1| DNA integrity scanning protein DisA [Bacillus cereus ATCC 10987] gi|47525338|ref|YP_016687.1| DNA integrity scanning protein DisA [Bacillus anthracis str. 'Ames Ancestor'] gi|47569818|ref|ZP_00240488.1| DNA-binding protein [Bacillus cereus G9241] gi|49183117|ref|YP_026369.1| DNA integrity scanning protein DisA [Bacillus anthracis str. Sterne] gi|49476705|ref|YP_034436.1| DNA integrity scanning protein DisA [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52145132|ref|YP_081695.1| DNA integrity scanning protein DisA [Bacillus cereus E33L] gi|65317544|ref|ZP_00390503.1| COG1623: Predicted nucleic-acid-binding protein (contains the HHH domain) [Bacillus anthracis str. A2012] gi|118475854|ref|YP_893005.1| DNA integrity scanning protein DisA [Bacillus thuringiensis str. Al Hakam] gi|165873140|ref|ZP_02217756.1| putative DNA-binding protein [Bacillus anthracis str. A0488] gi|167635082|ref|ZP_02393399.1| putative DNA-binding protein [Bacillus anthracis str. A0442] gi|167641961|ref|ZP_02400196.1| putative DNA-binding protein [Bacillus anthracis str. A0193] gi|170689564|ref|ZP_02880750.1| putative DNA-binding protein [Bacillus anthracis str. A0465] gi|170707558|ref|ZP_02898011.1| putative DNA-binding protein [Bacillus anthracis str. A0389] gi|177655602|ref|ZP_02936983.1| putative DNA-binding protein [Bacillus anthracis str. A0174] gi|190569014|ref|ZP_03021915.1| putative DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196036375|ref|ZP_03103772.1| putative DNA-binding protein [Bacillus cereus W] gi|196041796|ref|ZP_03109086.1| putative DNA-binding protein [Bacillus cereus NVH0597-99] gi|196047730|ref|ZP_03114931.1| putative DNA-binding protein [Bacillus cereus 03BB108] gi|218901285|ref|YP_002449119.1| putative DNA-binding protein [Bacillus cereus AH820] gi|225862136|ref|YP_002747514.1| putative DNA-binding protein [Bacillus cereus 03BB102] gi|227812757|ref|YP_002812766.1| putative DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228912823|ref|ZP_04076470.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925337|ref|ZP_04088433.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931586|ref|ZP_04094492.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228943890|ref|ZP_04106275.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228983339|ref|ZP_04143552.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229089215|ref|ZP_04220496.1| DNA integrity scanning protein disA [Bacillus cereus Rock3-42] gi|229119746|ref|ZP_04249007.1| DNA integrity scanning protein disA [Bacillus cereus 95/8201] gi|229153862|ref|ZP_04281992.1| DNA integrity scanning protein disA [Bacillus cereus ATCC 4342] gi|229182478|ref|ZP_04309729.1| DNA integrity scanning protein disA [Bacillus cereus BGSC 6E1] gi|229602833|ref|YP_002864735.1| putative DNA-binding protein [Bacillus anthracis str. A0248] gi|254684413|ref|ZP_05148273.1| DNA integrity scanning protein DisA [Bacillus anthracis str. CNEVA-9066] gi|254724224|ref|ZP_05186009.1| DNA integrity scanning protein DisA [Bacillus anthracis str. A1055] gi|254733762|ref|ZP_05191477.1| DNA integrity scanning protein DisA [Bacillus anthracis str. Western North America USA6153] gi|254744613|ref|ZP_05202292.1| DNA integrity scanning protein DisA [Bacillus anthracis str. Kruger B] gi|254756318|ref|ZP_05208347.1| DNA integrity scanning protein DisA [Bacillus anthracis str. Vollum] gi|254758396|ref|ZP_05210423.1| DNA integrity scanning protein DisA [Bacillus anthracis str. Australia 94] gi|301051821|ref|YP_003790032.1| DNA-binding protein [Bacillus anthracis CI] gi|81397486|sp|Q6HPT4|DISA_BACHK RecName: Full=DNA integrity scanning protein disA gi|81411369|sp|Q73FC3|DISA_BACC1 RecName: Full=DNA integrity scanning protein disA gi|81689856|sp|Q63HB6|DISA_BACCZ RecName: Full=DNA integrity scanning protein disA gi|81715502|sp|Q81VV7|DISA_BACAN RecName: Full=DNA integrity scanning protein disA gi|166201835|sp|A0R8F5|DISA_BACAH RecName: Full=DNA integrity scanning protein disA gi|226729431|sp|B7JK90|DISA_BACC0 RecName: Full=DNA integrity scanning protein disA gi|254773048|sp|C3P9M9|DISA_BACAA RecName: Full=DNA integrity scanning protein disA gi|254773049|sp|C3LJ56|DISA_BACAC RecName: Full=DNA integrity scanning protein disA gi|254773050|sp|C1ET13|DISA_BACC3 RecName: Full=DNA integrity scanning protein disA gi|30253595|gb|AAP24137.1| putative DNA-binding protein [Bacillus anthracis str. Ames] gi|42735079|gb|AAS39019.1| DNA-binding protein, putative [Bacillus cereus ATCC 10987] gi|47500486|gb|AAT29162.1| putative DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|47553511|gb|EAL11892.1| DNA-binding protein [Bacillus cereus G9241] gi|49177044|gb|AAT52420.1| DNA-binding protein, putative [Bacillus anthracis str. Sterne] gi|49328261|gb|AAT58907.1| DNA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978601|gb|AAU20151.1| DNA-binding protein [Bacillus cereus E33L] gi|118415079|gb|ABK83498.1| DNA-binding protein [Bacillus thuringiensis str. Al Hakam] gi|164711120|gb|EDR16681.1| putative DNA-binding protein [Bacillus anthracis str. A0488] gi|167510092|gb|EDR85503.1| putative DNA-binding protein [Bacillus anthracis str. A0193] gi|167529556|gb|EDR92306.1| putative DNA-binding protein [Bacillus anthracis str. A0442] gi|170127554|gb|EDS96428.1| putative DNA-binding protein [Bacillus anthracis str. A0389] gi|170666477|gb|EDT17254.1| putative DNA-binding protein [Bacillus anthracis str. A0465] gi|172080066|gb|EDT65164.1| putative DNA-binding protein [Bacillus anthracis str. A0174] gi|190559938|gb|EDV13922.1| putative DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|195991005|gb|EDX54976.1| putative DNA-binding protein [Bacillus cereus W] gi|196021433|gb|EDX60139.1| putative DNA-binding protein [Bacillus cereus 03BB108] gi|196027416|gb|EDX66033.1| putative DNA-binding protein [Bacillus cereus NVH0597-99] gi|218535134|gb|ACK87532.1| putative DNA-binding protein [Bacillus cereus AH820] gi|225788493|gb|ACO28710.1| putative DNA-binding protein [Bacillus cereus 03BB102] gi|227002802|gb|ACP12545.1| putative DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228600933|gb|EEK58502.1| DNA integrity scanning protein disA [Bacillus cereus BGSC 6E1] gi|228629543|gb|EEK86240.1| DNA integrity scanning protein disA [Bacillus cereus ATCC 4342] gi|228663647|gb|EEL19226.1| DNA integrity scanning protein disA [Bacillus cereus 95/8201] gi|228694054|gb|EEL47736.1| DNA integrity scanning protein disA [Bacillus cereus Rock3-42] gi|228776329|gb|EEM24682.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228815723|gb|EEM61959.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228828014|gb|EEM73742.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834259|gb|EEM79800.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846759|gb|EEM91764.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229267241|gb|ACQ48878.1| putative DNA-binding protein [Bacillus anthracis str. A0248] gi|300373990|gb|ADK02894.1| DNA-binding protein [Bacillus cereus biovar anthracis str. CI] Length = 357 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%) Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 R S + + PL L+ F T++ + R++ L +EGI + A KI Sbjct: 289 RGYRITSKISRVP---PLIIENLINRFKTLQGVCRATINELDDVEGIGEVRAKKIREGLK 345 Query: 609 K 609 + Sbjct: 346 R 346 >gi|315174006|gb|EFU18023.1| comEA protein [Enterococcus faecalis TX1346] Length = 182 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 125 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 176 Query: 606 HF 607 Sbjct: 177 ML 178 >gi|315166355|gb|EFU10372.1| comEA protein [Enterococcus faecalis TX1341] Length = 225 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 219 Query: 606 HF 607 Sbjct: 220 ML 221 >gi|315164894|gb|EFU08911.1| comEA protein [Enterococcus faecalis TX1302] Length = 225 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 219 Query: 606 HF 607 Sbjct: 220 ML 221 >gi|315161634|gb|EFU05651.1| comEA protein [Enterococcus faecalis TX0645] Length = 225 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 219 Query: 606 HF 607 Sbjct: 220 ML 221 >gi|315032943|gb|EFT44875.1| comEA protein [Enterococcus faecalis TX0017] Length = 225 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 219 Query: 606 HF 607 Sbjct: 220 ML 221 >gi|315030172|gb|EFT42104.1| comEA protein [Enterococcus faecalis TX4000] Length = 225 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 219 Query: 606 HF 607 Sbjct: 220 ML 221 >gi|315025364|gb|EFT37296.1| comEA protein [Enterococcus faecalis TX2137] Length = 225 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 219 Query: 606 HF 607 Sbjct: 220 ML 221 >gi|312899879|ref|ZP_07759197.1| comEA protein [Enterococcus faecalis TX0470] gi|311292875|gb|EFQ71431.1| comEA protein [Enterococcus faecalis TX0470] Length = 225 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 219 Query: 606 HF 607 Sbjct: 220 ML 221 >gi|312905173|ref|ZP_07764294.1| comEA protein [Enterococcus faecalis TX0635] gi|310631563|gb|EFQ14846.1| comEA protein [Enterococcus faecalis TX0635] gi|315579111|gb|EFU91302.1| comEA protein [Enterococcus faecalis TX0630] Length = 225 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 219 Query: 606 HF 607 Sbjct: 220 ML 221 >gi|307285768|ref|ZP_07565902.1| comEA protein [Enterococcus faecalis TX0860] gi|306502529|gb|EFM71796.1| comEA protein [Enterococcus faecalis TX0860] Length = 225 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 219 Query: 606 HF 607 Sbjct: 220 ML 221 >gi|300857271|ref|YP_003782255.1| putative DNA-binding protein [Clostridium ljungdahlii DSM 13528] gi|300437386|gb|ADK17153.1| putative DNA-binding protein [Clostridium ljungdahlii DSM 13528] Length = 354 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 26/53 (49%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L++I I L+++F +K + +S E L +EGI + A I N + Sbjct: 291 LNKIPRIPTNVIENLVKNFKELKGVMEASYEQLDRVEGIGEARARAIKNGLRR 343 >gi|294780838|ref|ZP_06746193.1| comEA protein [Enterococcus faecalis PC1.1] gi|294452083|gb|EFG20530.1| comEA protein [Enterococcus faecalis PC1.1] Length = 214 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 157 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 208 Query: 606 HF 607 Sbjct: 209 ML 210 >gi|257421910|ref|ZP_05598900.1| competence protein comEA [Enterococcus faecalis X98] gi|257163734|gb|EEU93694.1| competence protein comEA [Enterococcus faecalis X98] gi|315155383|gb|EFT99399.1| comEA protein [Enterococcus faecalis TX0043] Length = 225 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 219 Query: 606 HF 607 Sbjct: 220 ML 221 >gi|257416686|ref|ZP_05593680.1| competence protein comEA [Enterococcus faecalis AR01/DG] gi|257158514|gb|EEU88474.1| competence protein comEA [Enterococcus faecalis ARO1/DG] Length = 211 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 154 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 205 Query: 606 HF 607 Sbjct: 206 ML 207 >gi|257090638|ref|ZP_05584999.1| competence protein comEA [Enterococcus faecalis CH188] gi|256999450|gb|EEU85970.1| competence protein comEA [Enterococcus faecalis CH188] Length = 211 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 154 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 205 Query: 606 HF 607 Sbjct: 206 ML 207 >gi|257087479|ref|ZP_05581840.1| competence protein comEA [Enterococcus faecalis D6] gi|256995509|gb|EEU82811.1| competence protein comEA [Enterococcus faecalis D6] Length = 211 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 154 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 205 Query: 606 HF 607 Sbjct: 206 ML 207 >gi|257084525|ref|ZP_05578886.1| competence protein CelA [Enterococcus faecalis Fly1] gi|256992555|gb|EEU79857.1| competence protein CelA [Enterococcus faecalis Fly1] Length = 225 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 219 Query: 606 HF 607 Sbjct: 220 ML 221 >gi|257081973|ref|ZP_05576334.1| competence protein comEA [Enterococcus faecalis E1Sol] gi|256990003|gb|EEU77305.1| competence protein comEA [Enterococcus faecalis E1Sol] Length = 211 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 154 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 205 Query: 606 HF 607 Sbjct: 206 ML 207 >gi|257079680|ref|ZP_05574041.1| competence protein ComEA helix-hairpin-helix region [Enterococcus faecalis JH1] gi|256987710|gb|EEU75012.1| competence protein ComEA helix-hairpin-helix region [Enterococcus faecalis JH1] Length = 225 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 219 Query: 606 HF 607 Sbjct: 220 ML 221 >gi|256961257|ref|ZP_05565428.1| competence protein ComEA helix-hairpin-helix region [Enterococcus faecalis Merz96] gi|293383541|ref|ZP_06629451.1| competence protein comEA [Enterococcus faecalis R712] gi|293387346|ref|ZP_06631902.1| competence protein comEA [Enterococcus faecalis S613] gi|312906091|ref|ZP_07765103.1| comEA protein [Enterococcus faecalis DAPTO 512] gi|312909437|ref|ZP_07768292.1| comEA protein [Enterococcus faecalis DAPTO 516] gi|256951753|gb|EEU68385.1| competence protein ComEA helix-hairpin-helix region [Enterococcus faecalis Merz96] gi|291079053|gb|EFE16417.1| competence protein comEA [Enterococcus faecalis R712] gi|291083244|gb|EFE20207.1| competence protein comEA [Enterococcus faecalis S613] gi|310627737|gb|EFQ11020.1| comEA protein [Enterococcus faecalis DAPTO 512] gi|311290110|gb|EFQ68666.1| comEA protein [Enterococcus faecalis DAPTO 516] Length = 225 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 219 Query: 606 HF 607 Sbjct: 220 ML 221 >gi|256853809|ref|ZP_05559174.1| competence protein comEA [Enterococcus faecalis T8] gi|307290497|ref|ZP_07570410.1| comEA protein [Enterococcus faecalis TX0411] gi|256710752|gb|EEU25795.1| competence protein comEA [Enterococcus faecalis T8] gi|306498444|gb|EFM67948.1| comEA protein [Enterococcus faecalis TX0411] Length = 225 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 219 Query: 606 HF 607 Sbjct: 220 ML 221 >gi|256763141|ref|ZP_05503721.1| competence protein comEA [Enterococcus faecalis T3] gi|256684392|gb|EEU24087.1| competence protein comEA [Enterococcus faecalis T3] Length = 211 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 154 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 205 Query: 606 HF 607 Sbjct: 206 ML 207 >gi|255975151|ref|ZP_05425737.1| competence protein comEA [Enterococcus faecalis T2] gi|255968023|gb|EET98645.1| competence protein comEA [Enterococcus faecalis T2] Length = 211 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 154 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 205 Query: 606 HF 607 Sbjct: 206 ML 207 >gi|255972084|ref|ZP_05422670.1| predicted protein [Enterococcus faecalis T1] gi|255963102|gb|EET95578.1| predicted protein [Enterococcus faecalis T1] Length = 220 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 163 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 214 Query: 606 HF 607 Sbjct: 215 ML 216 >gi|229549378|ref|ZP_04438103.1| competence protein comEA [Enterococcus faecalis ATCC 29200] gi|307270791|ref|ZP_07552081.1| comEA protein [Enterococcus faecalis TX4248] gi|307287671|ref|ZP_07567714.1| comEA protein [Enterococcus faecalis TX0109] gi|312953530|ref|ZP_07772368.1| comEA protein [Enterococcus faecalis TX0102] gi|229305615|gb|EEN71611.1| competence protein comEA [Enterococcus faecalis ATCC 29200] gi|306501409|gb|EFM70712.1| comEA protein [Enterococcus faecalis TX0109] gi|306512905|gb|EFM81547.1| comEA protein [Enterococcus faecalis TX4248] gi|310628542|gb|EFQ11825.1| comEA protein [Enterococcus faecalis TX0102] gi|315152020|gb|EFT96036.1| comEA protein [Enterococcus faecalis TX0031] gi|315159041|gb|EFU03058.1| comEA protein [Enterococcus faecalis TX0312] gi|329572336|gb|EGG53993.1| comEA protein [Enterococcus faecalis TX1467] Length = 225 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 219 Query: 606 HF 607 Sbjct: 220 ML 221 >gi|229170935|ref|ZP_04298536.1| DNA integrity scanning protein disA [Bacillus cereus MM3] gi|228612475|gb|EEK69696.1| DNA integrity scanning protein disA [Bacillus cereus MM3] Length = 357 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%) Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 R S + + PL L+ F T++ + R++ L +EGI + A KI Sbjct: 289 RGYRITSKISRVP---PLIIENLINRFKTLQGVCRATINELDDVEGIGEVRAKKIREGLK 345 Query: 609 K 609 + Sbjct: 346 R 346 >gi|229188369|ref|ZP_04315417.1| DNA integrity scanning protein disA [Bacillus cereus ATCC 10876] gi|228595043|gb|EEK52814.1| DNA integrity scanning protein disA [Bacillus cereus ATCC 10876] Length = 357 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%) Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 R S + + PL L+ F T++ + R++ L +EGI + A KI Sbjct: 289 RGYRITSKISRVP---PLIIENLINRFKTLQGVCRATINELDDVEGIGEVRAKKIREGLK 345 Query: 609 K 609 + Sbjct: 346 R 346 >gi|227553982|ref|ZP_03984029.1| competence protein comEA [Enterococcus faecalis HH22] gi|227176885|gb|EEI57857.1| competence protein comEA [Enterococcus faecalis HH22] gi|315170252|gb|EFU14269.1| comEA protein [Enterococcus faecalis TX1342] gi|315574318|gb|EFU86509.1| comEA protein [Enterococcus faecalis TX0309B] gi|315580207|gb|EFU92398.1| comEA protein [Enterococcus faecalis TX0309A] Length = 225 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 219 Query: 606 HF 607 Sbjct: 220 ML 221 >gi|227519833|ref|ZP_03949882.1| competence protein comEA [Enterococcus faecalis TX0104] gi|227072723|gb|EEI10686.1| competence protein comEA [Enterococcus faecalis TX0104] Length = 225 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 219 Query: 606 HF 607 Sbjct: 220 ML 221 >gi|206978359|ref|ZP_03239232.1| putative DNA-binding protein [Bacillus cereus H3081.97] gi|217957660|ref|YP_002336202.1| DNA integrity scanning protein DisA [Bacillus cereus AH187] gi|222093854|ref|YP_002527904.1| DNA integrity scanning protein disa [Bacillus cereus Q1] gi|229136930|ref|ZP_04265557.1| DNA integrity scanning protein disA [Bacillus cereus BDRD-ST26] gi|229194474|ref|ZP_04321277.1| DNA integrity scanning protein disA [Bacillus cereus m1293] gi|226729434|sp|B7HQR7|DISA_BACC7 RecName: Full=DNA integrity scanning protein disA gi|254773051|sp|B9IZG8|DISA_BACCQ RecName: Full=DNA integrity scanning protein disA gi|206743420|gb|EDZ54854.1| putative DNA-binding protein [Bacillus cereus H3081.97] gi|217067488|gb|ACJ81738.1| putative DNA-binding protein [Bacillus cereus AH187] gi|221237902|gb|ACM10612.1| DNA-binding protein [Bacillus cereus Q1] gi|228588940|gb|EEK46955.1| DNA integrity scanning protein disA [Bacillus cereus m1293] gi|228646468|gb|EEL02675.1| DNA integrity scanning protein disA [Bacillus cereus BDRD-ST26] gi|324324073|gb|ADY19333.1| DNA integrity scanning protein DisA [Bacillus thuringiensis serovar finitimus YBT-020] Length = 357 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%) Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 R S + + PL L+ F T++ + R++ L +EGI + A KI Sbjct: 289 RGYRITSKISRVP---PLIIENLINRFKTLQGVCRATINELDDVEGIGEVRAKKIREGLK 345 Query: 609 K 609 + Sbjct: 346 R 346 >gi|29376943|ref|NP_816097.1| competence protein comEA [Enterococcus faecalis V583] gi|29344408|gb|AAO82167.1| competence protein comEA [Enterococcus faecalis V583] Length = 214 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 157 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 208 Query: 606 HF 607 Sbjct: 209 ML 210 >gi|300071102|gb|ADJ60502.1| DNA repair protein RadC [Lactococcus lactis subsp. cremoris NZ9000] Length = 217 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 12/30 (40%), Positives = 16/30 (53%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIA 600 LLQ FGT+ ++S L I GI + A Sbjct: 41 LLQHFGTLDNFRKASISELKEISGIGQTKA 70 >gi|172037937|ref|YP_001804438.1| DNA processing protein [Cyanothece sp. ATCC 51142] gi|171699391|gb|ACB52372.1| DNA processing protein [Cyanothece sp. ATCC 51142] Length = 374 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 26/47 (55%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 +I G+GP+ + + Q FG+++ ++S L +EGI K+ I Sbjct: 13 KIPGVGPVLLKRVWQQFGSLETAWKTSATELGQVEGIGAKLLNTIKQ 59 >gi|89895070|ref|YP_518557.1| hypothetical protein DSY2324 [Desulfitobacterium hafniense Y51] gi|219669482|ref|YP_002459917.1| hypothetical protein Dhaf_3463 [Desulfitobacterium hafniense DCB-2] gi|89334518|dbj|BAE84113.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219539742|gb|ACL21481.1| conserved hypothetical protein [Desulfitobacterium hafniense DCB-2] Length = 387 Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%) Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKI 603 PL ++ GIGP R LLQ FGT + ++ + E L + G +K A I Sbjct: 315 PLKDLPGIGPKMVRNLLQHFGTEMNVLHQVPGEELVKVAG--EKAARWI 361 >gi|300119605|ref|ZP_07057149.1| DNA integrity scanning protein DisA [Bacillus cereus SJ1] gi|298723077|gb|EFI63975.1| DNA integrity scanning protein DisA [Bacillus cereus SJ1] Length = 357 Score = 46.6 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%) Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 R S + + PL L+ F T++ + R++ L +EGI + A KI Sbjct: 289 RGYRITSKISRVP---PLIIENLINRFKTLQGVCRATINELDDVEGIGEVRAKKIREGLK 345 Query: 609 K 609 + Sbjct: 346 R 346 >gi|47564267|ref|ZP_00235312.1| UvrC-like protein [Bacillus cereus G9241] gi|47558419|gb|EAL16742.1| UvrC-like protein [Bacillus cereus G9241] Length = 213 Score = 46.6 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 9/31 (29%), Positives = 22/31 (70%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS 41 G+Y + D ++Y+GKA++++ R+ ++ +S Sbjct: 22 GIYFIKDYNENIIYIGKAFSIKSRVLAHFNS 52 >gi|256826919|ref|YP_003150878.1| DNA ligase, NAD-dependent [Cryptobacterium curtum DSM 15641] gi|256583062|gb|ACU94196.1| DNA ligase, NAD-dependent [Cryptobacterium curtum DSM 15641] Length = 725 Score = 46.6 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I +G + Q++ +++ + + + LA+IEGI IA ++ Sbjct: 540 GIRHVGKTTAEAIAQAYPSIEALREAKMDDLAAIEGIGPIIAESLFVFLR 589 >gi|229095009|ref|ZP_04226005.1| DNA ligase [Bacillus cereus Rock3-29] gi|229113962|ref|ZP_04243388.1| DNA ligase [Bacillus cereus Rock1-3] gi|228669421|gb|EEL24837.1| DNA ligase [Bacillus cereus Rock1-3] gi|228688339|gb|EEL42221.1| DNA ligase [Bacillus cereus Rock3-29] Length = 669 Score = 46.6 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L SI I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKSINEIGEKMAQSVVTYFDNED 564 >gi|222153373|ref|YP_002562550.1| competence protein [Streptococcus uberis 0140J] gi|222114186|emb|CAR42718.1| putative competence protein [Streptococcus uberis 0140J] Length = 226 Score = 46.6 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 KA L +I GIG R + +L + + S + L +I GI +K KI N Sbjct: 169 KATIEDLRKIPGIGEKRAQEILDARDSKGGFK--SIDDLLTISGIGQKTLEKIKN 221 Score = 40.9 bits (94), Expect = 0.71, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 16/27 (59%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I++++ E L I GI +K A +I + Sbjct: 166 NINKATIEDLRKIPGIGEKRAQEILDA 192 >gi|163938091|ref|YP_001642975.1| DNA integrity scanning protein DisA [Bacillus weihenstephanensis KBAB4] gi|229009593|ref|ZP_04166819.1| DNA integrity scanning protein disA [Bacillus mycoides DSM 2048] gi|229053930|ref|ZP_04195364.1| DNA integrity scanning protein disA [Bacillus cereus AH603] gi|229131091|ref|ZP_04260003.1| DNA integrity scanning protein disA [Bacillus cereus BDRD-ST196] gi|226729435|sp|A9VN96|DISA_BACWK RecName: Full=DNA integrity scanning protein disA gi|163860288|gb|ABY41347.1| protein of unknown function DUF147 [Bacillus weihenstephanensis KBAB4] gi|228652304|gb|EEL08229.1| DNA integrity scanning protein disA [Bacillus cereus BDRD-ST196] gi|228721348|gb|EEL72869.1| DNA integrity scanning protein disA [Bacillus cereus AH603] gi|228751615|gb|EEM01415.1| DNA integrity scanning protein disA [Bacillus mycoides DSM 2048] Length = 357 Score = 46.6 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 20/42 (47%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L+ F T++ + R++ L +EGI + A KI + Sbjct: 305 IENLINRFKTLQGVCRATINELDDVEGIGEVRAKKIREGLKR 346 >gi|257094042|ref|YP_003167683.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046566|gb|ACV35754.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 484 Score = 46.6 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 + +PE G Y L GR L V + N+++++ ++ + N R T +I I + Sbjct: 202 DDLPEAAGAYAFLGADGRRLLVRRTGNVRQQVLAHFAAAN---RDTALIRDTWRIEWRDA 258 Query: 64 CTEVEALLLEANM 76 EV A L E + Sbjct: 259 AGEVGARLHEIEL 271 >gi|229824042|ref|ZP_04450111.1| hypothetical protein GCWU000282_01346 [Catonella morbi ATCC 51271] gi|229786396|gb|EEP22510.1| hypothetical protein GCWU000282_01346 [Catonella morbi ATCC 51271] Length = 222 Score = 46.6 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 12/59 (20%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605 A S L+ + GIG + + ++ + S E L ++GI K+ K+ + Sbjct: 166 ADLSQLETLPGIGAKKAQAIIDY-------RTANGSFHSLEDLGKVKGIGPKLLDKLRD 217 >gi|229015486|ref|ZP_04172484.1| DNA integrity scanning protein disA [Bacillus cereus AH1273] gi|229021695|ref|ZP_04178277.1| DNA integrity scanning protein disA [Bacillus cereus AH1272] gi|228739563|gb|EEL89977.1| DNA integrity scanning protein disA [Bacillus cereus AH1272] gi|228745773|gb|EEL95777.1| DNA integrity scanning protein disA [Bacillus cereus AH1273] Length = 357 Score = 46.6 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 20/42 (47%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L+ F T++ + R++ L +EGI + A KI + Sbjct: 305 IENLINRFKTLQGVCRATINELDDVEGIGEVRAKKIREGLKR 346 >gi|229101110|ref|ZP_04231876.1| DNA ligase [Bacillus cereus Rock3-28] gi|228682238|gb|EEL36349.1| DNA ligase [Bacillus cereus Rock3-28] Length = 669 Score = 46.6 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L SI I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKSINEIGEKMAQSVVTYFDNED 564 >gi|167753798|ref|ZP_02425925.1| hypothetical protein ALIPUT_02083 [Alistipes putredinis DSM 17216] gi|167658423|gb|EDS02553.1| hypothetical protein ALIPUT_02083 [Alistipes putredinis DSM 17216] Length = 370 Score = 46.6 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 20/45 (44%) Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 GIGP LL FG+ + + +S + L + ++A I Sbjct: 14 PGIGPKGAVHLLDVFGSAEAVFSASADELIEKARLRPELARAILQ 58 >gi|313887872|ref|ZP_07821551.1| comEA protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846038|gb|EFR33420.1| comEA protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 216 Score = 46.3 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 13/61 (21%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYNH 606 A S L +I G+G + ++ R+ S E + ++ GI K + ++ Sbjct: 161 ADLSELTKIPGVGEKTAQKIIDY--------RANNSFSSIEDIKNVPGIGDKKFESMKDY 212 Query: 607 F 607 Sbjct: 213 I 213 Score = 38.5 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 8/27 (29%), Positives = 14/27 (51%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ + L I G+ +K A KI ++ Sbjct: 157 NINSADLSELTKIPGVGEKTAQKIIDY 183 >gi|229042193|ref|ZP_04189947.1| DNA ligase [Bacillus cereus AH676] gi|228727128|gb|EEL78331.1| DNA ligase [Bacillus cereus AH676] Length = 669 Score = 46.3 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDELVKATEEELKAINEIGEKMAQSVVTYFDNED 564 >gi|229188563|ref|ZP_04315602.1| DNA ligase [Bacillus cereus ATCC 10876] gi|228594752|gb|EEK52532.1| DNA ligase [Bacillus cereus ATCC 10876] Length = 669 Score = 46.3 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDELVKATEEELKAINEIGEKMAQSVVTYFDNED 564 >gi|332638256|ref|ZP_08417119.1| Holliday junction DNA helicase RuvA [Weissella cibaria KACC 11862] Length = 199 Score = 46.3 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 3/68 (4%) Query: 551 KAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 K + L ++GIGP +L G V+ I+ + L GI KK A +I Sbjct: 66 KLLFQKLLNVSGIGPKSALAILANADHTGLVQAIADNDITFLTKFPGIGKKTAQQIVLDL 125 Query: 608 HKNTSHTP 615 P Sbjct: 126 QNKLGDLP 133 >gi|301063436|ref|ZP_07203968.1| transcription termination factor NusA [delta proteobacterium NaphS2] gi|300442375|gb|EFK06608.1| transcription termination factor NusA [delta proteobacterium NaphS2] Length = 474 Score = 46.3 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKI 603 L ++NG+G L + F + + I+ S+ E L ++GIS++ A + Sbjct: 353 SLLDLNGVGEKIATELYDADFRSARDIAGSTVEDLMVVKGISQEKAEAL 401 >gi|224369440|ref|YP_002603604.1| RecD1 [Desulfobacterium autotrophicum HRM2] gi|223692157|gb|ACN15440.1| RecD1 [Desulfobacterium autotrophicum HRM2] Length = 826 Score = 46.3 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 5/55 (9%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603 K S L I G+GP + +++ F T+ + S E L + GI++K I Sbjct: 93 KYIGSGL--IKGVGPKTAKKIVRHFNDQTLD-VFEQSIERLTEVPGIARKRLKTI 144 >gi|154498024|ref|ZP_02036402.1| hypothetical protein BACCAP_02004 [Bacteroides capillosus ATCC 29799] gi|150273014|gb|EDN00171.1| hypothetical protein BACCAP_02004 [Bacteroides capillosus ATCC 29799] Length = 664 Score = 46.3 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 8/51 (15%), Positives = 22/51 (43%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 +G ++L F T+ + ++ E ++ + A +++ H + S Sbjct: 512 VGQKAGKILASHFSTMDALLAATEEDFTAVPDVGAITAKSLWDWLHSHQSQ 562 >gi|307132386|ref|YP_003884402.1| DNA ligase, NAD(+)-dependent [Dickeya dadantii 3937] gi|306529915|gb|ADM99845.1| DNA ligase, NAD(+)-dependent [Dickeya dadantii 3937] Length = 683 Score = 46.3 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 20/47 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L FGT++ + + E L ++ + +A + N + Sbjct: 531 VGEATAASLASHFGTLEALQSADLEALQQVQDVGIVVATHVRNFLDE 577 >gi|255020220|ref|ZP_05292289.1| Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake [Acidithiobacillus caldus ATCC 51756] gi|254970362|gb|EET27855.1| Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake [Acidithiobacillus caldus ATCC 51756] Length = 364 Score = 46.3 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 13/48 (27%) Query: 560 INGIGPLRKRLLLQSFGTVKM-------------ISRSSPETLASIEG 594 I G+GP+R+R LLQ FG+V + R+ L G Sbjct: 12 IPGLGPVRQRALLQHFGSVAACFGRGTAELAELGLGRAQVAQLQKDPG 59 >gi|228906068|ref|ZP_04069957.1| DNA ligase [Bacillus thuringiensis IBL 200] gi|228853477|gb|EEM98245.1| DNA ligase [Bacillus thuringiensis IBL 200] Length = 669 Score = 46.3 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDELVKATEEELKAINEIGEKMAQSVVTYFDNED 564 >gi|332829049|gb|EGK01713.1| DNA ligase [Dysgonomonas gadei ATCC BAA-286] Length = 665 Score = 46.3 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 22/47 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G + L +F + + +S E L ++ I +IA I +F + Sbjct: 515 VGETVAKKLALAFPNIDALMAASAEELVQVDEIGDRIAQSIVRYFSE 561 >gi|228919228|ref|ZP_04082598.1| DNA ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840335|gb|EEM85606.1| DNA ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 669 Score = 46.3 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDELVKATEEELKAINEIGEKMAQSVVTYFDNED 564 >gi|228937587|ref|ZP_04100225.1| DNA ligase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970474|ref|ZP_04131125.1| DNA ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977043|ref|ZP_04137446.1| DNA ligase [Bacillus thuringiensis Bt407] gi|228782660|gb|EEM30835.1| DNA ligase [Bacillus thuringiensis Bt407] gi|228789206|gb|EEM37134.1| DNA ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228822068|gb|EEM68058.1| DNA ligase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938080|gb|AEA13976.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis serovar chinensis CT-43] Length = 669 Score = 46.3 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDELVKATEEELKAINEIGEKMAQSVVTYFDNED 564 >gi|229107967|ref|ZP_04237594.1| DNA ligase [Bacillus cereus Rock1-15] gi|228675470|gb|EEL30687.1| DNA ligase [Bacillus cereus Rock1-15] Length = 669 Score = 46.3 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDELVKATEEELKAINEIGEKMAQSVVTYFDNED 564 >gi|228956728|ref|ZP_04118514.1| DNA ligase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229143090|ref|ZP_04271523.1| DNA ligase [Bacillus cereus BDRD-ST24] gi|296501121|ref|YP_003662821.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis BMB171] gi|228640363|gb|EEK96760.1| DNA ligase [Bacillus cereus BDRD-ST24] gi|228802916|gb|EEM49748.1| DNA ligase [Bacillus thuringiensis serovar pakistani str. T13001] gi|296322173|gb|ADH05101.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis BMB171] Length = 669 Score = 46.3 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDELVKATEEELKAINEIGEKMAQSVVTYFDNED 564 >gi|206967609|ref|ZP_03228565.1| DNA ligase, NAD-dependent [Bacillus cereus AH1134] gi|228950848|ref|ZP_04112971.1| DNA ligase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229068048|ref|ZP_04201356.1| DNA ligase [Bacillus cereus F65185] gi|229077651|ref|ZP_04210281.1| DNA ligase [Bacillus cereus Rock4-2] gi|229176884|ref|ZP_04304280.1| DNA ligase [Bacillus cereus 172560W] gi|206736529|gb|EDZ53676.1| DNA ligase, NAD-dependent [Bacillus cereus AH1134] gi|228606557|gb|EEK63982.1| DNA ligase [Bacillus cereus 172560W] gi|228705592|gb|EEL57948.1| DNA ligase [Bacillus cereus Rock4-2] gi|228715056|gb|EEL66923.1| DNA ligase [Bacillus cereus F65185] gi|228808777|gb|EEM55273.1| DNA ligase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 669 Score = 46.3 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDELVKATEEELKAINEIGEKMAQSVVTYFDNED 564 >gi|126661533|ref|ZP_01732580.1| hypothetical protein CY0110_05067 [Cyanothece sp. CCY0110] gi|126617186|gb|EAZ88008.1| hypothetical protein CY0110_05067 [Cyanothece sp. CCY0110] Length = 212 Score = 46.3 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 13/74 (17%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIK-----SYMHSNNHTHRIT--------HM 51 ++P+ PG+Y + + +LY+GKA NL+ R Y + RI ++ Sbjct: 16 KLPKLPGIYFVYTLDHNLLYIGKADNLRTRWNNHHKYQYFIETSIESRIGYFTFDSIDNL 75 Query: 52 ISQINNIRFTVTCT 65 I T T Sbjct: 76 NETIEEFESEPTET 89 >gi|30018549|ref|NP_830180.1| NAD-dependent DNA ligase LigA [Bacillus cereus ATCC 14579] gi|229125792|ref|ZP_04254818.1| DNA ligase [Bacillus cereus BDRD-Cer4] gi|81436035|sp|Q81IP2|DNLJ_BACCR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|29894090|gb|AAP07381.1| NAD-dependent DNA ligase [Bacillus cereus ATCC 14579] gi|228657649|gb|EEL13461.1| DNA ligase [Bacillus cereus BDRD-Cer4] Length = 669 Score = 46.3 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDELVKATEEELKAINEIGEKMAQSVVTYFDNED 564 >gi|75759916|ref|ZP_00739987.1| NAD-dependent DNA ligase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228899023|ref|ZP_04063296.1| DNA ligase [Bacillus thuringiensis IBL 4222] gi|74492583|gb|EAO55728.1| NAD-dependent DNA ligase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228860598|gb|EEN04985.1| DNA ligase [Bacillus thuringiensis IBL 4222] Length = 669 Score = 46.3 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDELVKATEEELKAINEIGEKMAQSVVTYFDNED 564 >gi|325570045|ref|ZP_08145970.1| NAD-dependent DNA ligase LigA [Enterococcus casseliflavus ATCC 12755] gi|325156873|gb|EGC69044.1| NAD-dependent DNA ligase LigA [Enterococcus casseliflavus ATCC 12755] Length = 687 Score = 46.3 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R+L + FG ++ +S++ E + S+E I IA + +F Sbjct: 524 GIRHVGAKAARILAEHFGDLRTLSKAKEEEIISLETIGATIAESVVTYFDNQE 576 >gi|320103360|ref|YP_004178951.1| DNA protecting protein DprA [Isosphaera pallida ATCC 43644] gi|319750642|gb|ADV62402.1| DNA protecting protein DprA [Isosphaera pallida ATCC 43644] Length = 453 Score = 46.3 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 L+ + G+G + LL+ FG I R+S L I + K+ + + Sbjct: 22 RLNMVPGVGAVTLAALLERFGDPSSILRASAHDLQGIPHVGPKVIDGLRSALR 74 >gi|189485424|ref|YP_001956365.1| DNA ligase (NAD+) [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|254781446|sp|B1H072|DNLJ_UNCTG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|170287383|dbj|BAG13904.1| DNA ligase (NAD+) [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 674 Score = 46.3 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 3/65 (4%) Query: 550 KKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 KK S L I IG ++ + F +++ + +S E + I +A + Sbjct: 501 KKHPLSKLLFALGIRRIGEKVSEIIAKKFKSMEALFNASIEDFTRVPEIGSILALSLKEF 560 Query: 607 FHKNT 611 F T Sbjct: 561 FENKT 565 >gi|42519595|ref|NP_965525.1| NAD-dependent DNA ligase [Lactobacillus johnsonii NCC 533] gi|81667534|sp|Q74I49|DNLJ_LACJO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|41583884|gb|AAS09491.1| NAD-dependent DNA ligase [Lactobacillus johnsonii NCC 533] Length = 668 Score = 46.3 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 31/55 (56%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I+ +G RL+L+ + ++ +S+ + L SI+ I + IA + +F++ ++ Sbjct: 513 GIDHVGAKAARLILEKYKNLEKVSQLTVPELTSIDTIGETIAESLTAYFNQPSAQ 567 >gi|300858287|ref|YP_003783270.1| DNA ligase [Corynebacterium pseudotuberculosis FRC41] gi|300685741|gb|ADK28663.1| DNA ligase [Corynebacterium pseudotuberculosis FRC41] gi|302206007|gb|ADL10349.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudotuberculosis C231] gi|302330560|gb|ADL20754.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudotuberculosis 1002] gi|308276242|gb|ADO26141.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudotuberculosis I19] Length = 694 Score = 46.3 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 22/49 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L + ++ + +S E +A EG+ IA + F Sbjct: 539 SIRHVGPTAARALASRYHSMDALREASAEEIADTEGVGAIIAQSFKDWF 587 >gi|218230787|ref|YP_002365135.1| NAD-dependent DNA ligase LigA [Bacillus cereus B4264] gi|254781552|sp|B7H4U8|DNLJ_BACC4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218158744|gb|ACK58736.1| DNA ligase (NAD(+)) [Bacillus cereus B4264] Length = 669 Score = 46.3 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDELVKATEEELKAINEIGEKMAQSVVTYFDNED 564 >gi|218248171|ref|YP_002373542.1| NAD-dependent DNA ligase [Cyanothece sp. PCC 8801] gi|254781307|sp|B7K0A2|DNLJ_CYAP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218168649|gb|ACK67386.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 8801] Length = 674 Score = 46.3 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 32/46 (69%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 +G + +LL +F +V+++S++S TLAS+ G+ ++IA +++ F Sbjct: 521 VGNVTAKLLTDNFPSVEVLSQASVPTLASVYGVGEEIAQSVFDWFK 566 >gi|218895413|ref|YP_002443824.1| DNA ligase, NAD-dependent [Bacillus cereus G9842] gi|228963387|ref|ZP_04124548.1| DNA ligase [Bacillus thuringiensis serovar sotto str. T04001] gi|254781550|sp|B7IUW5|DNLJ_BACC2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218545091|gb|ACK97485.1| DNA ligase, NAD-dependent [Bacillus cereus G9842] gi|228796281|gb|EEM43728.1| DNA ligase [Bacillus thuringiensis serovar sotto str. T04001] Length = 669 Score = 46.3 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDELVKATEEELKAINEIGEKMAQSVVTYFDNED 564 >gi|166157967|ref|NP_001107393.1| excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence) [Xenopus (Silurana) tropicalis] gi|163916074|gb|AAI57332.1| LOC100135224 protein [Xenopus (Silurana) tropicalis] gi|213625729|gb|AAI71208.1| hypothetical protein LOC100135224 [Xenopus (Silurana) tropicalis] gi|213627374|gb|AAI71206.1| hypothetical protein LOC100135224 [Xenopus (Silurana) tropicalis] Length = 268 Score = 46.3 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 24/39 (61%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L +FGT+ ++ +S E L+ G+ + A ++Y+ FH+ Sbjct: 219 LFTTFGTLFDLANASREDLSLCPGLGPQKAKRLYDTFHE 257 >gi|126660781|ref|ZP_01731877.1| hypothetical protein CY0110_14235 [Cyanothece sp. CCY0110] gi|126617925|gb|EAZ88698.1| hypothetical protein CY0110_14235 [Cyanothece sp. CCY0110] Length = 350 Score = 46.3 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 9/85 (10%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63 +Q+P G+Y ++D + Y+G+A NLQ R + HR+ + SQ I+FT+ Sbjct: 19 KQLPLVSGIYYVIDQNDVIWYIGQAKNLQAR-----WKSQSHHRLFQLKSQ-KKIKFTIY 72 Query: 64 CTEVEALLL---EANMIKRLKPRFN 85 +E+ L E I + P N Sbjct: 73 YQILESSKLNEVEQKEIAKYHPHLN 97 >gi|329667842|gb|AEB93790.1| NAD-dependent DNA ligase [Lactobacillus johnsonii DPC 6026] Length = 668 Score = 46.3 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 31/55 (56%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I+ +G RL+L+ + ++ +S+ + L SI+ I + IA + +F++ ++ Sbjct: 513 GIDHVGAKAARLILEKYKNLEKVSQLTVPELTSIDTIGETIAESLTAYFNQPSAQ 567 >gi|282851211|ref|ZP_06260576.1| DNA ligase (NAD(+)) [Lactobacillus gasseri 224-1] gi|282557179|gb|EFB62776.1| DNA ligase (NAD(+)) [Lactobacillus gasseri 224-1] Length = 668 Score = 46.3 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 31/55 (56%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I+ +G RL+L+ + ++ +S+ + L SI+ I + IA + +F++ ++ Sbjct: 513 GIDHVGAKAARLILEKYKNLEKVSQLTVPELTSIDTIGETIAESLTAYFNQPSAQ 567 >gi|227889453|ref|ZP_04007258.1| NAD-dependent DNA ligase [Lactobacillus johnsonii ATCC 33200] gi|227849931|gb|EEJ60017.1| NAD-dependent DNA ligase [Lactobacillus johnsonii ATCC 33200] Length = 668 Score = 46.3 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 31/55 (56%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I+ +G RL+L+ + ++ +S+ + L SI+ I + IA + +F++ ++ Sbjct: 513 GIDHVGAKAARLILEKYKNLEKVSQLTVPELTSIDTIGETIAESLTAYFNQPSAQ 567 >gi|116630136|ref|YP_815308.1| NAD-dependent DNA ligase [Lactobacillus gasseri ATCC 33323] gi|122272927|sp|Q041K2|DNLJ_LACGA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116095718|gb|ABJ60870.1| NAD-dependent DNA ligase [Lactobacillus gasseri ATCC 33323] Length = 668 Score = 46.3 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 31/55 (56%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I+ +G RL+L+ + ++ +S+ + L SI+ I + IA + +F++ ++ Sbjct: 513 GIDHVGAKAARLILEKYKNLEKVSQLTVPELTSIDTIGETIAESLTAYFNQPSAQ 567 >gi|289550639|ref|YP_003471543.1| Late competence protein ComEA, DNA receptor [Staphylococcus lugdunensis HKU09-01] gi|289180171|gb|ADC87416.1| Late competence protein ComEA, DNA receptor [Staphylococcus lugdunensis HKU09-01] Length = 187 Score = 46.3 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 12/57 (21%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISR-----SSPETLASIEGISKKIACKIYNHF 607 L ++ GIGP + + +L +S + L I+GI +K K+ +F Sbjct: 136 SLTKVPGIGPSKAKEILNY-------KEQHGQFTSVDELKKIKGIGEKTFEKLKQYF 185 >gi|194017399|ref|ZP_03056011.1| DNA repair protein RadC [Bacillus pumilus ATCC 7061] gi|194011267|gb|EDW20837.1| DNA repair protein RadC [Bacillus pumilus ATCC 7061] Length = 232 Score = 46.3 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 20/38 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 LLQ+FG ++ + +S E ++ I G+ K A + Sbjct: 57 RLLQTFGGLRSVKEASIEEMSKIRGVGKAKAISLLAAL 94 >gi|167647755|ref|YP_001685418.1| DNA repair protein RadC [Caulobacter sp. K31] gi|167350185|gb|ABZ72920.1| DNA repair protein RadC [Caulobacter sp. K31] Length = 196 Score = 46.3 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 + LL FG+ +S E L +++G+ + A I H+ Sbjct: 54 KALLARFGSFGATISASIEDLKTVQGVGETAAIDIKL-LHEAA 95 >gi|282889962|ref|ZP_06298497.1| hypothetical protein pah_c008o052 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500155|gb|EFB42439.1| hypothetical protein pah_c008o052 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 668 Score = 46.3 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Query: 548 RRKKAAYSPL---DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 + K ++S I +G LL + G V ++ + + E L IEGI +K+A I Sbjct: 502 KSKDVSFSRFIMALGIKHVGEGTAELLAKRAGNVHILMQMTTEELLQIEGIGEKVATAIV 561 Query: 605 NHF 607 +F Sbjct: 562 EYF 564 >gi|251777792|ref|ZP_04820712.1| helicase, RecD/TraA family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082107|gb|EES47997.1| helicase, RecD/TraA family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 739 Score = 46.3 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 16/65 (24%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN------------ 605 I+GIGP+ + ++ FG T+ I + E L IEGI KK IY Sbjct: 88 IHGIGPVTAKKIIDKFGEKTLD-ILENHIEELMEIEGIGKKKFMIIYESYMEQNGLKEVI 146 Query: 606 -HFHK 609 HFHK Sbjct: 147 LHFHK 151 >gi|329114881|ref|ZP_08243637.1| Hypothetical protein APO_1680 [Acetobacter pomorum DM001] gi|326695778|gb|EGE47463.1| Hypothetical protein APO_1680 [Acetobacter pomorum DM001] Length = 158 Score = 46.3 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 21/101 (20%) Query: 6 MPECPGVYQMLDIAG-RVLYVGKAYN-LQKRIKSYMHSNNHT--HRITHMISQINN---- 57 +P PGVY G VLYVG A L +RI+ Y +S N RI + + + Sbjct: 43 VPNKPGVYAY--AVGQEVLYVGSARCGLHRRIRHYENSKNLRTASRIREEVLRTLSRGLG 100 Query: 58 IRFTVTCTEVEALL-----------LEANMIKRLKPRFNIL 87 + V E +L LE +I+ +KP++N Sbjct: 101 VDVYVIIPEKGFMLNGVLPVDPVAGLEEGLIRAIKPKWNRR 141 >gi|197104531|ref|YP_002129908.1| DNA repair protein [Phenylobacterium zucineum HLK1] gi|196477951|gb|ACG77479.1| DNA repair protein [Phenylobacterium zucineum HLK1] Length = 243 Score = 46.3 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 + LL FG++ + ++ L ++ G+ + +A + H+ T Sbjct: 67 KQLLARFGSLGAVLGATAAELRTVPGVGESVALDLKL-LHEAT 108 >gi|238792031|ref|ZP_04635667.1| DNA ligase [Yersinia intermedia ATCC 29909] gi|238728662|gb|EEQ20180.1| DNA ligase [Yersinia intermedia ATCC 29909] Length = 670 Score = 46.3 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 7/48 (14%), Positives = 18/48 (37%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +G L F + + + + L S+ + + +A + N + Sbjct: 520 VGEATAANLAAHFCNLDNLRAADIDALKSVPDVGEVVARHVRNFLSEE 567 >gi|257387145|ref|YP_003176918.1| NAD-dependent DNA ligase LigA [Halomicrobium mukohataei DSM 12286] gi|257169452|gb|ACV47211.1| DNA ligase, NAD-dependent [Halomicrobium mukohataei DSM 12286] Length = 700 Score = 46.3 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 4/60 (6%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSP----ETLASIEGISKKIACKIYNHFHKNTSHT 614 I+ +G + R L + FG+ + I + + +++ + +A I F + Sbjct: 540 GIHDVGTVTARNLAREFGSFEAIREAGAAGDTDAFEAVDDVGPVVAESICEFFRGERNEA 599 >gi|169825771|ref|YP_001695929.1| hypothetical protein Bsph_0165 [Lysinibacillus sphaericus C3-41] gi|168990259|gb|ACA37799.1| Hypothetical yqxK protein [Lysinibacillus sphaericus C3-41] Length = 388 Score = 46.3 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 3/49 (6%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMIS-RSSPETLASIEGISKKIACKI 603 PLD I GIGP LL +FGT I + + E L I + KIA I Sbjct: 318 PLDFIPGIGPKMMERLLHAFGTEMNILHQVTMEQLEQI--VPHKIAKLI 364 >gi|187251767|ref|YP_001876249.1| DNA repair protein RadC [Elusimicrobium minutum Pei191] gi|186971927|gb|ACC98912.1| DNA repair protein RadC [Elusimicrobium minutum Pei191] Length = 228 Score = 46.3 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 26/79 (32%) Query: 543 TTHRKR-RKKAAYSPLD--------------EINGIGPLRKR------LLLQSFGTVKMI 581 T HR+R + K A + LD I RK L++ FG++ + Sbjct: 10 TGHRERIKNKFAKNGLDGFMEHETLELLLTYSIP-----RKDTKPIAWELIKKFGSLSGV 64 Query: 582 SRSSPETLASIEGISKKIA 600 +SP+ L ++G+ K+ A Sbjct: 65 LDASPQELMEVKGVGKETA 83 >gi|268319976|ref|YP_003293632.1| DNA ligase, NAD-dependent [Lactobacillus johnsonii FI9785] gi|262398351|emb|CAX67365.1| DNA ligase, NAD-dependent [Lactobacillus johnsonii FI9785] Length = 668 Score = 46.3 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 31/55 (56%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I+ +G RL+L+ + ++ +S+ + L SI+ I + IA + +F++ ++ Sbjct: 513 GIDHVGAKAARLILEKYKNLEKVSQLTVPELTSIDTIGETIAESLTAYFNQPSAQ 567 >gi|238854176|ref|ZP_04644523.1| DNA ligase, NAD-dependent [Lactobacillus gasseri 202-4] gi|238833252|gb|EEQ25542.1| DNA ligase, NAD-dependent [Lactobacillus gasseri 202-4] Length = 668 Score = 46.3 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 31/55 (56%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I+ +G RL+L+ + ++ +S+ + L SI+ I + IA + +F++ ++ Sbjct: 513 GIDHVGAKAARLILEKYKNLEKVSQLTVPELTSIDTIGETIAESLTAYFNQPSAQ 567 >gi|227874422|ref|ZP_03992603.1| DNA ligase (NAD(+)) [Oribacterium sinus F0268] gi|227839738|gb|EEJ50187.1| DNA ligase (NAD(+)) [Oribacterium sinus F0268] Length = 692 Score = 46.3 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 9/70 (12%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVK--MISRSSPETLASIEGISKKIACK 602 KA S L I GIG R+L ++F + + ++ E + ++GI + +A Sbjct: 524 KAKTSNLGRLLYGLGIEGIGVSNGRMLAEAF-SQDPYKLMDATKEEILQVKGIGQVLADS 582 Query: 603 IYNHFHKNTS 612 I +F K + Sbjct: 583 IAEYFQKEEN 592 >gi|160932696|ref|ZP_02080085.1| hypothetical protein CLOLEP_01537 [Clostridium leptum DSM 753] gi|156867770|gb|EDO61142.1| hypothetical protein CLOLEP_01537 [Clostridium leptum DSM 753] Length = 738 Score = 46.3 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 3/52 (5%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + GIGP+ L+ +FG T++++ PE LAS++GISK A +I + H Sbjct: 93 VKGIGPVMAARLVDAFGDQTLEVLEN-HPERLASVKGISKAKAQQIASELHN 143 >gi|56477511|ref|YP_159100.1| ComE operon protein 1-related protein [Aromatoleum aromaticum EbN1] gi|56313554|emb|CAI08199.1| ComE operon protein 1-related protein [Aromatoleum aromaticum EbN1] Length = 155 Score = 46.3 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 15/52 (28%) Query: 557 LDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGIS-KKIAC 601 L+ + GIGP + + +++ F +S + L + GI K +A Sbjct: 94 LETVKGIGPAKAKAIIEYRKANGAF--------ASVDDLTKVPGIGDKSVAQ 137 >gi|257791950|ref|YP_003182556.1| DNA ligase, NAD-dependent [Eggerthella lenta DSM 2243] gi|325829905|ref|ZP_08163363.1| DNA ligase (NAD+) [Eggerthella sp. HGA1] gi|257475847|gb|ACV56167.1| DNA ligase, NAD-dependent [Eggerthella lenta DSM 2243] gi|325488072|gb|EGC90509.1| DNA ligase (NAD+) [Eggerthella sp. HGA1] Length = 708 Score = 46.3 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 19/100 (19%) Query: 513 KKGEALVLNMRDPILYFIQRLRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKR 569 K GE + L + + DE+ R FA +A + I +G Sbjct: 511 KDGEPIRLGST-VAKKLVAAI-DES-RTRPFA---------RALFG--LGIRHVG-KTIA 555 Query: 570 LLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 LL + + +++ + +S E LA I+G+ KIA Y Sbjct: 556 ELLAAAYPSIEALMEASEEDLAVIDGVGPKIARSAYLFLR 595 >gi|149183793|ref|ZP_01862194.1| NAD-dependent DNA ligase LigA [Bacillus sp. SG-1] gi|148848496|gb|EDL62745.1| NAD-dependent DNA ligase LigA [Bacillus sp. SG-1] Length = 668 Score = 46.3 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G + L Q F + + +S + L +I I K+A + +F K Sbjct: 511 GIRHVGAKAAKTLAQEFENIDNLKVASKDQLTAINEIGDKMADAVVAYFEKEE 563 >gi|301156154|emb|CBW15625.1| unnamed protein product [Haemophilus parainfluenzae T3T1] Length = 234 Score = 46.3 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 KA L +++GIG + + ++ V I +S L++I+GI + KI + Sbjct: 178 KADAETLQKLSGIGEKKAQAIIDYRNKVGKIKSAS--ELSNIDGIGEATIEKISPYL 232 >gi|257452731|ref|ZP_05618030.1| NAD-dependent DNA ligase [Fusobacterium sp. 3_1_5R] gi|317059272|ref|ZP_07923757.1| NAD-dependent DNA ligase [Fusobacterium sp. 3_1_5R] gi|313684948|gb|EFS21783.1| NAD-dependent DNA ligase [Fusobacterium sp. 3_1_5R] Length = 676 Score = 46.3 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + +LL + + + + E L IEG+ +K+A I + F T Sbjct: 516 GIPFVGKVAAKLLAKESKNILKLQTMTEEELQQIEGVGEKMARSIVDFFQNETKKQ 571 >gi|167629436|ref|YP_001679935.1| DNA-binding protein, putative [Heliobacterium modesticaldum Ice1] gi|167592176|gb|ABZ83924.1| DNA-binding protein, putative [Heliobacterium modesticaldum Ice1] Length = 353 Score = 46.3 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 21/41 (51%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L+ +FG ++ + R+S E L +EGI + A I + Sbjct: 303 ENLVGAFGGLQNVCRASTEELDEVEGIGEVRARAIKEGLRR 343 >gi|125624319|ref|YP_001032802.1| DNA repair protein radC-like protein [Lactococcus lactis subsp. cremoris MG1363] gi|229485554|sp|A2RLC4|Y1515_LACLM RecName: Full=UPF0758 protein llmg_1515 gi|124493127|emb|CAL98091.1| DNA repair protein radC homolog [Lactococcus lactis subsp. cremoris MG1363] Length = 227 Score = 46.3 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 12/30 (40%), Positives = 16/30 (53%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIA 600 LLQ FGT+ ++S L I GI + A Sbjct: 51 LLQHFGTLDNFRKASISELKEISGIGQTKA 80 >gi|15643810|ref|NP_228858.1| comEA protein-related protein [Thermotoga maritima MSB8] gi|4981594|gb|AAD36129.1|AE001765_8 comEA protein-related protein [Thermotoga maritima MSB8] Length = 181 Score = 46.3 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 L I GIGP++ + ++ + S S E L ++ GI +K KI + Sbjct: 57 LMSIPGIGPVKAQRIIDYRESHGGFS--SVEELKNVSGIGEKTLEKISRY 104 Score = 38.2 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 15/27 (55%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 ++ +S E L SI GI A +I ++ Sbjct: 48 ELNTASLEDLMSIPGIGPVKAQRIIDY 74 >gi|269925881|ref|YP_003322504.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798] gi|269789541|gb|ACZ41682.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798] Length = 930 Score = 46.3 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 10/55 (18%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 + G+G R L+Q+FG+++ I L +++ I +I N ++ S Sbjct: 197 GVPGVGEKTARSLIQTFGSLQNI-------LENVDSIKP---ERIRNAIKEHQSQ 241 >gi|320540519|ref|ZP_08040169.1| DNA ligase, NAD(+)-dependent [Serratia symbiotica str. Tucson] gi|320029450|gb|EFW11479.1| DNA ligase, NAD(+)-dependent [Serratia symbiotica str. Tucson] Length = 685 Score = 46.3 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 6/47 (12%), Positives = 18/47 (38%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L FG+++ + + L + + + +A + + Sbjct: 520 VGEATAANLAAHFGSLEKLYAADIAALKEVPDVGEVVAQHTRHFLDE 566 >gi|315658134|ref|ZP_07911006.1| competence protein comEA [Staphylococcus lugdunensis M23590] gi|315496463|gb|EFU84786.1| competence protein comEA [Staphylococcus lugdunensis M23590] Length = 226 Score = 46.3 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 12/57 (21%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISR-----SSPETLASIEGISKKIACKIYNHF 607 L ++ GIGP + + +L +S + L I+GI +K K+ +F Sbjct: 175 SLTKVPGIGPSKAKEILNY-------KEQHGQFTSVDELKKIKGIGEKTFEKLKQYF 224 >gi|290967938|ref|ZP_06559488.1| DNA ligase (NAD(+)) [Megasphaera genomosp. type_1 str. 28L] gi|290782077|gb|EFD94655.1| DNA ligase (NAD(+)) [Megasphaera genomosp. type_1 str. 28L] Length = 668 Score = 46.3 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 27/45 (60%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G R+L ++FG+++ ++ + TL ++E I +IA + +F Sbjct: 519 VGAKAGRILAETFGSMQALAAADIATLMAVETIGPRIAESVAAYF 563 >gi|188588110|ref|YP_001919909.1| helicase, RecD/TraA family [Clostridium botulinum E3 str. Alaska E43] gi|188498391|gb|ACD51527.1| helicase, RecD/TraA family [Clostridium botulinum E3 str. Alaska E43] Length = 739 Score = 46.3 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 16/65 (24%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN------------ 605 I+GIGP+ + ++ FG T+ I + E L IEGI KK IY Sbjct: 88 IHGIGPVTAKKIIDKFGEKTLD-ILENHIEELMEIEGIGKKKFMIIYESYMEQNGLKEVI 146 Query: 606 -HFHK 609 HFHK Sbjct: 147 LHFHK 151 >gi|187933398|ref|YP_001884722.1| helicase, RecD/TraA family [Clostridium botulinum B str. Eklund 17B] gi|187721551|gb|ACD22772.1| helicase, RecD/TraA family [Clostridium botulinum B str. Eklund 17B] Length = 739 Score = 46.3 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 16/65 (24%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN------------ 605 I+GIGP+ + ++ FG T+ I + E L IEGI KK IY Sbjct: 88 IHGIGPVTAKKIIDKFGEKTLD-ILENHIEELMEIEGIGKKKFMIIYESYMEQNGLKEVI 146 Query: 606 -HFHK 609 HFHK Sbjct: 147 LHFHK 151 >gi|170759254|ref|YP_001785497.1| RecD/TraA family helicase [Clostridium botulinum A3 str. Loch Maree] gi|169406243|gb|ACA54654.1| helicase, RecD/TraA family [Clostridium botulinum A3 str. Loch Maree] Length = 744 Score = 46.3 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN-HFHKNT 611 I+GIGP+ + +++ FG T+ I ++ E L IEGI KK IY+ + +N Sbjct: 88 ISGIGPVTAKKIVKKFGEETL-NILDNNIERLTDIEGIGKKKIEIIYDSYIKQNE 141 >gi|116873191|ref|YP_849972.1| NAD-dependent DNA ligase LigA [Listeria welshimeri serovar 6b str. SLCC5334] gi|123466434|sp|A0AJL1|DNLJ_LISW6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116742069|emb|CAK21193.1| DNA ligase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 670 Score = 46.3 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G + L F T+ + + ETL SI I +K+A I +F Sbjct: 508 GIRHVGAKAAKSLAVHFETMDNLKMADKETLTSINDIGEKMADSIVTYFANEE 560 >gi|110669303|ref|YP_659114.1| DNA repair and recombination protein RadA [Haloquadratum walsbyi DSM 16790] gi|121692072|sp|Q18EU1|RADA_HALWD RecName: Full=DNA repair and recombination protein radA gi|109627050|emb|CAJ53526.1| DNA repair and recombination protein RadA [Haloquadratum walsbyi DSM 16790] Length = 343 Score = 46.3 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606 L+++ G+GP L+ + F + + I+ +SP +++ + + A I N Sbjct: 5 ELEDLPGVGPATSDKLVDAGFESYQAIAVASPAEMSNTADVGESTASDIINA 56 >gi|225018630|ref|ZP_03707822.1| hypothetical protein CLOSTMETH_02580 [Clostridium methylpentosum DSM 5476] gi|224948624|gb|EEG29833.1| hypothetical protein CLOSTMETH_02580 [Clostridium methylpentosum DSM 5476] Length = 659 Score = 46.3 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 23/49 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I G+G +LL + +G + + + E + I G+ IA I +F Sbjct: 509 GIRGVGQSVAKLLCEKYGNIDELMTAPAEEIDEIYGVGGVIAHNIVQYF 557 >gi|170289532|ref|YP_001739770.1| helix-hairpin-helix repeat-containing competence protein ComEA [Thermotoga sp. RQ2] gi|170177035|gb|ACB10087.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermotoga sp. RQ2] Length = 181 Score = 46.3 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 L I GIGP++ + ++ + S S E L ++ GI +K KI + Sbjct: 57 LMSIPGIGPVKAQRIIDYRESHGGFS--SVEELKNVSGIGEKTLEKISRY 104 Score = 38.2 bits (87), Expect = 4.4, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 15/27 (55%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 ++ +S E L SI GI A +I ++ Sbjct: 48 ELNTASLEDLMSIPGIGPVKAQRIIDY 74 >gi|301100660|ref|XP_002899419.1| DNA excision repair protein ERCC-1 [Phytophthora infestans T30-4] gi|262103727|gb|EEY61779.1| DNA excision repair protein ERCC-1 [Phytophthora infestans T30-4] Length = 308 Score = 46.3 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 21/39 (53%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 LL +FGTVK + +S E L+ G+ K ++ F + Sbjct: 263 LLSTFGTVKGLMNASMEELSLCPGVGAKKVRQLLETFQE 301 >gi|189241644|ref|XP_970360.2| PREDICTED: similar to excision repair cross-complementing 1 ercc1 [Tribolium castaneum] Length = 245 Score = 46.3 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L I I L+ F T++ + +++ L+ G+ A K+Y+ H+ Sbjct: 187 VLTSIKPINKTDAMNLIARFKTLEGVIKATEFQLSECPGLGPVKARKLYSTLHE 240 >gi|195953269|ref|YP_002121559.1| DNA ligase, NAD-dependent [Hydrogenobaculum sp. Y04AAS1] gi|254781349|sp|B4U8X0|DNLJ_HYDS0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|195932881|gb|ACG57581.1| DNA ligase, NAD-dependent [Hydrogenobaculum sp. Y04AAS1] Length = 700 Score = 46.3 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 25/86 (29%) Query: 539 RFAITTHRKRRKKAAYSPLDEIN--------------GI---GPLRKRLLLQSFGTVKMI 581 RFA KK+A + +D I GI G + L + + I Sbjct: 517 RFA--------KKSAQNLIDAIEASKRRGLARVLYGLGIRYVGLTTAKKLASYYKDIWNI 568 Query: 582 SRSSPETLASIEGISKKIACKIYNHF 607 ++S E L +IE I +A I F Sbjct: 569 VKASEEDLRNIEDIGDIVARSIKEFF 594 >gi|67920947|ref|ZP_00514466.1| NAD-dependent DNA ligase [Crocosphaera watsonii WH 8501] gi|67857064|gb|EAM52304.1| NAD-dependent DNA ligase [Crocosphaera watsonii WH 8501] Length = 670 Score = 46.3 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 17/75 (22%) Query: 550 KKAAYSPLDEING-----------------IGPLRKRLLLQSFGTVKMISRSSPETLASI 592 K+A + ++ I G +G + LL ++F +++ +S++S L+S+ Sbjct: 487 SKSANNLIEAIEGSKKQPFSRVLYGLGIRYVGSVTAGLLAENFPSMEQLSQASFSDLSSV 546 Query: 593 EGISKKIACKIYNHF 607 G+ ++IA I + F Sbjct: 547 YGVGEEIAQSIIDWF 561 >gi|281413115|ref|YP_003347194.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermotoga naphthophila RKU-10] gi|281374218|gb|ADA67780.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermotoga naphthophila RKU-10] Length = 181 Score = 46.3 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 L I GIGP++ + ++ + S S E L ++ GI +K KI + Sbjct: 57 LMSIPGIGPVKAQRIIDYRESHGGFS--SVEELKNVSGIGEKTLEKISRY 104 Score = 38.2 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 15/27 (55%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 ++ +S E L SI GI A +I ++ Sbjct: 48 ELNTASLEDLMSIPGIGPVKAQRIIDY 74 >gi|222100489|ref|YP_002535057.1| ComEA protein-related protein [Thermotoga neapolitana DSM 4359] gi|221572879|gb|ACM23691.1| ComEA protein-related protein [Thermotoga neapolitana DSM 4359] Length = 181 Score = 46.3 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 17/75 (22%) Query: 548 RRKKAAYS---PLDEINGIGPLRKRLLLQSFGTVKMISR-------------SSPETLAS 591 RR + +S L ++GIG + + TV+ + + +S E L + Sbjct: 75 RRIRGKFSTVEELTNVSGIGEKTLEK-ISKYVTVEGVEQPFRSEVTKLNVNTASLEELET 133 Query: 592 IEGISKKIACKIYNH 606 + I + A I + Sbjct: 134 LPYIGEAKARAIIEY 148 Score = 45.5 bits (106), Expect = 0.024, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 6/52 (11%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISR--SSPETLASIEGISKKIACKIYNH 606 L I GIGP++ + +++ + I S+ E L ++ GI +K KI + Sbjct: 57 LMSIPGIGPVKAQRIVEY----RRIRGKFSTVEELTNVSGIGEKTLEKISKY 104 Score = 38.5 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 9/24 (37%), Positives = 12/24 (50%) Query: 583 RSSPETLASIEGISKKIACKIYNH 606 +S E L SI GI A +I + Sbjct: 51 SASVEDLMSIPGIGPVKAQRIVEY 74 >gi|152979719|ref|YP_001345348.1| NAD-dependent DNA ligase LigA [Actinobacillus succinogenes 130Z] gi|190359224|sp|A6VR16|DNLJ_ACTSZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|150841442|gb|ABR75413.1| DNA ligase, NAD-dependent [Actinobacillus succinogenes 130Z] Length = 672 Score = 46.3 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 6/65 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA + L I +G L F + + + E L ++ + + +A +IY Sbjct: 503 KAKKTTLARFIFALGIREVGEATALNLANFFKNLTALQTADLEQLQAVSDVGEVVANRIY 562 Query: 605 NHFHK 609 + + Sbjct: 563 VFWRE 567 >gi|326795234|ref|YP_004313054.1| Holliday junction ATP-dependent DNA helicase ruvA [Marinomonas mediterranea MMB-1] gi|326545998|gb|ADZ91218.1| Holliday junction ATP-dependent DNA helicase ruvA [Marinomonas mediterranea MMB-1] Length = 199 Score = 46.3 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 4/64 (6%) Query: 543 TTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKI 599 H + ++A + L ++NGIGP +L S T ++ + S+ + L I G+ KK Sbjct: 62 GFH-SKDERAVFRVLIKVNGIGPKMALAILSSMSTSELIENVQESNVDALVKIPGVGKKT 120 Query: 600 ACKI 603 A ++ Sbjct: 121 AERL 124 >gi|87308785|ref|ZP_01090924.1| DNA ligase [Blastopirellula marina DSM 3645] gi|87288496|gb|EAQ80391.1| DNA ligase [Blastopirellula marina DSM 3645] Length = 679 Score = 46.3 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 25/49 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G +LL + F TV + +S E +A++ I IA +++ F Sbjct: 514 SIRHVGNRVAQLLARHFVTVDALLSASEEEIAAVNEIGPIIAASVHHFF 562 >gi|282899989|ref|ZP_06307949.1| NAD-dependent DNA ligase [Cylindrospermopsis raciborskii CS-505] gi|281195087|gb|EFA70024.1| NAD-dependent DNA ligase [Cylindrospermopsis raciborskii CS-505] Length = 690 Score = 46.3 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 27/55 (49%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G + +LL + F TV ++ + + + GI +IA +Y FH + + Sbjct: 528 GIRHVGSVNAQLLSEKFTTVDKLASAKQSDIEGVYGIGVEIAQSVYQWFHISANQ 582 Score = 40.5 bits (93), Expect = 0.78, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 6/60 (10%) Query: 559 EINGIGPLRKRLL----LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +I GIG L L +V + + E L +E + K+ A K+ ++ + Sbjct: 462 DIKGIGEKLVHQLVDKGLVH--SVADLYNLTEEQLCGLERMGKRSAEKLVQVIRESKNQP 519 >gi|319426762|gb|ADV54836.1| DNA ligase, NAD-dependent [Shewanella putrefaciens 200] Length = 685 Score = 46.3 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 20/45 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G L F ++ + ++ E L ++E + +A + + F Sbjct: 534 VGEATAANLAAHFASLDALRVATVEQLTAVEDVGVVVAQHVAHFF 578 >gi|120598462|ref|YP_963036.1| DNA ligase, NAD-dependent [Shewanella sp. W3-18-1] gi|166216244|sp|A1RII7|DNLJ_SHESW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|120558555|gb|ABM24482.1| DNA ligase, NAD-dependent [Shewanella sp. W3-18-1] Length = 685 Score = 46.3 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 20/45 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G L F ++ + ++ E L ++E + +A + + F Sbjct: 534 VGEATAANLAAHFASLDALRVATVEQLTAVEDVGVVVAQHVAHFF 578 >gi|146293460|ref|YP_001183884.1| DNA ligase, NAD-dependent [Shewanella putrefaciens CN-32] gi|166216243|sp|A4Y802|DNLJ_SHEPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|145565150|gb|ABP76085.1| DNA ligase, NAD-dependent [Shewanella putrefaciens CN-32] Length = 685 Score = 46.3 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 20/45 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G L F ++ + ++ E L ++E + +A + + F Sbjct: 534 VGEATAANLAAHFASLDALRVATVEQLTAVEDVGVVVAQHVAHFF 578 >gi|327535733|gb|AEA94567.1| competence protein comEA [Enterococcus faecalis OG1RF] Length = 114 Score = 46.3 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 57 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 108 Query: 606 HF 607 Sbjct: 109 ML 110 >gi|319647199|ref|ZP_08001421.1| hypothetical protein HMPREF1012_02460 [Bacillus sp. BT1B_CT2] gi|317390546|gb|EFV71351.1| hypothetical protein HMPREF1012_02460 [Bacillus sp. BT1B_CT2] Length = 128 Score = 46.3 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 22/38 (57%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 LLQ+F ++++ +S E L+SI GI + A +I Sbjct: 49 RLLQTFDGLRLLKEASAEELSSISGIGRAKAVQILAAL 86 >gi|289434764|ref|YP_003464636.1| DNA-binding protein, ComEA family [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171008|emb|CBH27550.1| DNA-binding protein, ComEA family [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 202 Score = 46.3 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 A+ S L + GIG + +++ + + + + E L + GI +K K+ + Sbjct: 146 ASTSDLQTVPGIGESKATAIIEY-REKEGLFQ-TIEDLQKVTGIGEKTIEKLKEYL 199 >gi|288555664|ref|YP_003427599.1| DNA binding and uptake late competence protein [Bacillus pseudofirmus OF4] gi|288546824|gb|ADC50707.1| late competence operon required for DNA binding and uptake [Bacillus pseudofirmus OF4] Length = 206 Score = 46.3 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 6/57 (10%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS--SPETLASIEGISKKIACKIYN 605 KA+ + L+ + GIGP + +L + + + S E L ++ GI K K+ Sbjct: 149 KASQAELETLPGIGPAKAEAIL----SYREEQGAFQSVEELMNVSGIGPKSFEKLQE 201 >gi|326335129|ref|ZP_08201326.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692659|gb|EGD34601.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 929 Score = 46.3 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 15/62 (24%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA----------SIEGI-SKKIACKI 603 D I G +G + LL+ FG+++ + ++ + L +GI SK +A I Sbjct: 190 DNIPGLPGVGEKTAQKLLKEFGSMENLL-ANTDKLKGKLRENIQANKDKGILSKTLARII 248 Query: 604 YN 605 + Sbjct: 249 LD 250 >gi|317493200|ref|ZP_07951623.1| 5'-3' exonuclease [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918860|gb|EFV40196.1| 5'-3' exonuclease [Enterobacteriaceae bacterium 9_2_54FAA] Length = 250 Score = 46.3 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 4/39 (10%) Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 S + I GIGP LL FG++ I E + ++ Sbjct: 177 SKISGIPGIGPKAAATLLNEFGSLSAI----FEQIENVP 211 >gi|327402054|ref|YP_004342892.1| DNA ligase [Fluviicola taffensis DSM 16823] gi|327317562|gb|AEA42054.1| DNA ligase [Fluviicola taffensis DSM 16823] Length = 670 Score = 46.3 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 25/50 (50%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + L +F + IS+++ + L +++ I +KIA + F + Sbjct: 521 VGETVAKKLAYAFNNIDAISKATYDELIAVDEIGEKIAIAVQKFFQDERA 570 >gi|289208742|ref|YP_003460808.1| DNA ligase, NAD-dependent [Thioalkalivibrio sp. K90mix] gi|288944373|gb|ADC72072.1| DNA ligase, NAD-dependent [Thioalkalivibrio sp. K90mix] Length = 697 Score = 46.3 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 21/47 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G + R L +G + + ++ E L + + +A I N F + Sbjct: 545 VGEVTARNLATYYGDLDTLMQADAEALQEVPDVGPIVAEHIANFFAE 591 >gi|307151740|ref|YP_003887124.1| excinuclease ABC subunit C domain-containing protein [Cyanothece sp. PCC 7822] gi|306981968|gb|ADN13849.1| Excinuclease ABC C subunit domain protein [Cyanothece sp. PCC 7822] Length = 527 Score = 46.3 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 14/91 (15%) Query: 1 MSSEQM-PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQ---IN 56 + ++++ P G+Y ++D G V YVG+A N+ KR + HR+ + +Q Sbjct: 15 LKNKELLPAYSGIYYVVDETGLVWYVGQAKNINKR-----WAGKTHHRLHQLAAQKKKSF 69 Query: 57 NIRFTVTCTEV--EALLLEANMIKRLKPRFN 85 I + + T EA E I++ P N Sbjct: 70 RIYYELVATGFLDEA---EKQRIEKYNPHLN 97 >gi|52549421|gb|AAU83270.1| recombinase [uncultured archaeon GZfos27B6] Length = 315 Score = 46.3 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 7/54 (12%) Query: 557 LDEINGIGPLRKRLL----LQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 L+E+ G+GP L L +++ I+ +SP L + I + A KI N Sbjct: 3 LEELPGVGPAIAEKLREAGLN---SLEAIAVASPAELVATAEIGESTAAKIINA 53 >gi|257387245|ref|YP_003177018.1| DNA repair and recombination protein RadA [Halomicrobium mukohataei DSM 12286] gi|257169552|gb|ACV47311.1| DNA repair and recombination protein RadA [Halomicrobium mukohataei DSM 12286] Length = 349 Score = 45.9 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%) Query: 552 AAYSP-LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + S L+E+ G+GP L + F + I+ +SP L++ I + A I + Sbjct: 1 MSTSEDLEELPGVGPATAEKLKDNGFDGYQGIAVASPGELSNTADIGESSAADIIQAARE 60 Query: 610 NTS 612 Sbjct: 61 AAD 63 >gi|312865899|ref|ZP_07726120.1| ComE operon protein 1 [Streptococcus downei F0415] gi|311098303|gb|EFQ56526.1| ComE operon protein 1 [Streptococcus downei F0415] Length = 125 Score = 45.9 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 8/55 (14%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKI 603 A+ L I+GIG R + ++ G K S E L +I GI +K KI Sbjct: 70 ASKEELQTISGIGEKRAQDIIDYRQEHGGFK-----SVEELKNISGIGEKTYEKI 119 >gi|312882689|ref|ZP_07742426.1| NAD-dependent DNA ligase LigA [Vibrio caribbenthicus ATCC BAA-2122] gi|309369650|gb|EFP97165.1| NAD-dependent DNA ligase LigA [Vibrio caribbenthicus ATCC BAA-2122] Length = 670 Score = 45.9 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 22/52 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L + F T+ I+ + + L ++ I +A I F + + T Sbjct: 521 VGEATATNLAKHFKTLANITAAPHDALIEVQDIGDIVAKHITAFFSQQQNQT 572 >gi|295111985|emb|CBL28735.1| GIY-YIG catalytic domain. [Synergistetes bacterium SGP1] Length = 109 Score = 45.9 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Query: 7 PECPGVYQMLDIA-GRVLYVGKAYNLQKRIKSYMHSNNHTHRITH 50 P PGVY++ D A G ++Y+G+ +++ R++ + S Sbjct: 25 PNAPGVYRIRDKATGEIVYIGQTGDVRTRLQQHERSGRFDPETQK 69 >gi|260892303|ref|YP_003238400.1| DNA integrity scanning, DisA, linker region [Ammonifex degensii KC4] gi|260864444|gb|ACX51550.1| DNA integrity scanning, DisA, linker region [Ammonifex degensii KC4] Length = 352 Score = 45.9 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 21/42 (50%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 ++++FG + I ++S E L +EGI + A I + Sbjct: 300 IENIVRTFGNLSRILQASIEELDDVEGIGEARARMIKEGLKR 341 >gi|145589636|ref|YP_001156233.1| DNA ligase, NAD-dependent [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|190359270|sp|A4SYV5|DNLJ_POLSQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|145048042|gb|ABP34669.1| DNA ligase, NAD-dependent [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 671 Score = 45.9 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 8/51 (15%), Positives = 22/51 (43%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G + L + ++ + +S E L +++ + +A I + + Sbjct: 521 GIRHVGETTAKDLANHYQSMHALMDASVEELLTVKDVGPVVADSITSFMQE 571 >gi|196249912|ref|ZP_03148607.1| DNA polymerase I [Geobacillus sp. G11MC16] gi|1205984|gb|AAB52611.1| DNA polymerase I [Geobacillus stearothermophilus] gi|196210426|gb|EDY05190.1| DNA polymerase I [Geobacillus sp. G11MC16] Length = 876 Score = 45.9 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 10/54 (18%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 + GIG LL+ FGTV+ + +S + ++G K+ + ++ Sbjct: 192 GVPGIGEKTAVKLLKQFGTVENVL-ASIDE---VKG------EKLKENLRQHRD 235 >gi|297624586|ref|YP_003706020.1| DNA polymerase I [Truepera radiovictrix DSM 17093] gi|297165766|gb|ADI15477.1| DNA polymerase I [Truepera radiovictrix DSM 17093] Length = 867 Score = 45.9 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 9/53 (16%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 D I G IGP LLQ +G++ I E L ++ + A K+ Sbjct: 213 DNIPGAKGIGPKTAAKLLQDYGSLDAI----LENLERVK--PESAAKKVRASL 259 >gi|212224494|ref|YP_002307730.1| ski2-like helicase [Thermococcus onnurineus NA1] gi|212009451|gb|ACJ16833.1| DNA helicase [Thermococcus onnurineus NA1] Length = 726 Score = 45.9 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 561 NGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 IG R R L + F T + I R+ L ++EGI K+ ++ HF Sbjct: 651 PNIGRKRARALYNAGFRTTEDIMRAKVSELLAVEGIGLKVVEGLFMHF 698 >gi|138896291|ref|YP_001126744.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2] gi|134267804|gb|ABO67999.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2] Length = 878 Score = 45.9 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 10/54 (18%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 + GIG LL+ FGTV+ + +S + ++G K+ + ++ Sbjct: 194 GVPGIGEKTAVKLLKQFGTVENVL-ASIDE---VKG------EKLKENLRQHRD 237 >gi|319899376|ref|YP_004159473.1| Holliday junction ATP-dependent DNA helicase ruvA [Bartonella clarridgeiae 73] gi|319403344|emb|CBI76903.1| Holliday junction ATP-dependent DNA helicase ruvA [Bartonella clarridgeiae 73] Length = 213 Score = 45.9 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 11/110 (10%) Query: 509 KFFVKKGEALVLNMRDPILYFI--QRLRDEAHR-FAITTHRKRRKKAAYSPLDEINGIGP 565 F+ L L +R+EA R F TT + +K + L + G+G Sbjct: 27 IIFIPNRLHSSLPAIGESLSLFIETHVREEAIRLFGFTT---KSEKEWFCLLQNVPGVGA 83 Query: 566 LRKRLLLQSFGTVKMISRS-SPETLASI---EGISKKIACKIYNHFHKNT 611 LL + ++ +S++ + +A I G+ KK++ +I + Sbjct: 84 KVALALLGTL-SINDLSQAITLNDIAMISRAPGVGKKVSERIVSELKNKA 132 >gi|251788438|ref|YP_003003159.1| NAD-dependent DNA ligase LigA [Dickeya zeae Ech1591] gi|247537059|gb|ACT05680.1| DNA ligase, NAD-dependent [Dickeya zeae Ech1591] Length = 682 Score = 45.9 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 20/47 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L FGT++ + + + L ++ + +A + N + Sbjct: 530 VGEATAANLAAHFGTLEALQAADLDALQQVQDVGIVVATHVRNFLDE 576 >gi|196016209|ref|XP_002117958.1| hypothetical protein TRIADDRAFT_61989 [Trichoplax adhaerens] gi|190579431|gb|EDV19526.1| hypothetical protein TRIADDRAFT_61989 [Trichoplax adhaerens] Length = 265 Score = 45.9 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 19/35 (54%) Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 FG++ I +S + LA GI + A +I+ F + Sbjct: 212 FGSMDNIISASVQDLALCPGIGLQKAKRIHALFRE 246 >gi|169834268|ref|YP_001694538.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae Hungary19A-6] gi|254781426|sp|B1IBQ3|DNLJ_STRPI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|168996770|gb|ACA37382.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae Hungary19A-6] Length = 652 Score = 45.9 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 29/55 (52%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G +LLLQ F +++ +S++ E +ASIE + IA + +F S Sbjct: 502 GIRHVGSKASQLLLQYFHSIENLSQADSEEVASIESLGGVIAKSLQTYFAAEGSE 556 >gi|153826197|ref|ZP_01978864.1| DNA ligase [Vibrio cholerae MZO-2] gi|149740057|gb|EDM54226.1| DNA ligase [Vibrio cholerae MZO-2] Length = 669 Score = 45.9 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 22/52 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L Q F +++ I ++S E + + +A + F ++ + Sbjct: 520 VGEATALNLAQHFLSLEAIQQASLEQFIEVPDVGVVVASHLLAFFAQDRNQQ 571 >gi|332654161|ref|ZP_08419905.1| DNA repair protein RadC [Ruminococcaceae bacterium D16] gi|332517247|gb|EGJ46852.1| DNA repair protein RadC [Ruminococcaceae bacterium D16] Length = 229 Score = 45.9 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 8/30 (26%), Positives = 18/30 (60%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIA 600 L++ FG++ + +S E L ++G+ + A Sbjct: 49 LIEQFGSLSGVLDASVEELRKVKGVGEHTA 78 >gi|270000835|gb|EEZ97282.1| hypothetical protein TcasGA2_TC011086 [Tribolium castaneum] Length = 213 Score = 45.9 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L I I L+ F T++ + +++ L+ G+ A K+Y+ H+ Sbjct: 155 VLTSIKPINKTDAMNLIARFKTLEGVIKATEFQLSECPGLGPVKARKLYSTLHE 208 >gi|217964370|ref|YP_002350048.1| ComE operon protein 1 [Listeria monocytogenes HCC23] gi|217333640|gb|ACK39434.1| ComE operon protein 1 [Listeria monocytogenes HCC23] gi|307571065|emb|CAR84244.1| DNA-binding protein, ComEA family [Listeria monocytogenes L99] Length = 200 Score = 45.9 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 A L ++ GIG + +++ + + + + E L ++ GI +K K+ + Sbjct: 144 ATKDDLQQVPGIGESKATAIIEH-REKEGLFQ-TIEDLKNVSGIGEKTVEKLKEYL 197 >gi|73668577|ref|YP_304592.1| hypothetical protein Mbar_A1044 [Methanosarcina barkeri str. Fusaro] gi|72395739|gb|AAZ70012.1| DNA mismatch repair protein, MutS family [Methanosarcina barkeri str. Fusaro] Length = 719 Score = 45.9 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%) Query: 554 YSPLDEINGIGPLRKRLLLQSFGT----VKMISRSSPETLASIEGISKKIACKIYNH 606 S L EI+GIG L++ FGT ++ I +L+ I GIS A + + Sbjct: 13 LSSLREIHGIGERVADRLIEHFGTEEAALQAICEGDIASLSEINGISHNFALSLARY 69 >gi|307594663|ref|YP_003900980.1| DEAD/DEAH box helicase domain-containing protein [Vulcanisaeta distributa DSM 14429] gi|307549864|gb|ADN49929.1| DEAD/DEAH box helicase domain protein [Vulcanisaeta distributa DSM 14429] Length = 763 Score = 45.9 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 559 EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605 + G+G R R L + F +V+ I+ + P ++ I G K+A I Sbjct: 676 NLEGVGRARARALYNAGFKSVEDIANADPRVISMIRGFGDKLARSIIE 723 >gi|307704876|ref|ZP_07641768.1| DNA ligase, NAD-dependent [Streptococcus mitis SK597] gi|307621589|gb|EFO00634.1| DNA ligase, NAD-dependent [Streptococcus mitis SK597] Length = 652 Score = 45.9 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 30/55 (54%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G +LLLQ F +++ ++++ PE +ASIE + IA + +F S Sbjct: 502 GIRHVGSKASQLLLQHFHSIETLAQADPEEVASIESLGGVIAKSLQTYFATEGSE 556 >gi|255521025|ref|ZP_05388262.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL J1-175] Length = 550 Score = 45.9 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G + L F T+ + + ETL SI I +K+A I +F Sbjct: 387 GIRHVGAKAAKSLAIHFDTMDNLKVADKETLTSINDIGEKMADSIVTYFANEE 439 >gi|299137525|ref|ZP_07030706.1| hypothetical protein AciX8DRAFT_2011 [Acidobacterium sp. MP5ACTX8] gi|298600166|gb|EFI56323.1| hypothetical protein AciX8DRAFT_2011 [Acidobacterium sp. MP5ACTX8] Length = 167 Score = 45.9 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 9/52 (17%) Query: 2 SSEQMPECPGVYQMLDI--------AGRVLYVGKA-YNLQKRIKSYMHSNNH 44 +++ +P+ PGVY L G ++YVGKA +++ R Y+ Sbjct: 53 NAKNIPQSPGVYAFLIKPMIPFGLEHGILIYVGKADTSIRDRYAHYLQQAAD 104 >gi|33241967|ref|NP_876908.1| DNA polymerase I [Chlamydophila pneumoniae TW-183] gi|33236477|gb|AAP98565.1| DNA-directed DNA polymerase I [Chlamydophila pneumoniae TW-183] Length = 870 Score = 45.9 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 7/45 (15%) Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 D I G+ GP + LL+ FG+V+ + E L +++G+S+ + Sbjct: 185 DNIPGLPGCGPKKAAALLKQFGSVEGL----LENLDAVKGLSQTM 225 >gi|153813748|ref|ZP_01966416.1| hypothetical protein RUMOBE_04182 [Ruminococcus obeum ATCC 29174] gi|149830168|gb|EDM85261.1| hypothetical protein RUMOBE_04182 [Ruminococcus obeum ATCC 29174] Length = 538 Score = 45.9 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 3/66 (4%) Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNHFH 608 K YS I IG +++ + F + I + E +++I+GI IA + +F Sbjct: 446 AKVIYS--LGIANIGLSNAKVICRHFDDDLDKIRSADEEEISAIDGIGPVIAKSLTKYFS 503 Query: 609 KNTSHT 614 ++ Sbjct: 504 NPENNQ 509 >gi|256003493|ref|ZP_05428483.1| protein of unknown function DUF147 [Clostridium thermocellum DSM 2360] gi|281418343|ref|ZP_06249363.1| DNA integrity scanning, DisA [Clostridium thermocellum JW20] gi|255992517|gb|EEU02609.1| protein of unknown function DUF147 [Clostridium thermocellum DSM 2360] gi|281409745|gb|EFB40003.1| DNA integrity scanning, DisA [Clostridium thermocellum JW20] gi|316941438|gb|ADU75472.1| DNA integrity scanning, DisA, linker region [Clostridium thermocellum DSM 1313] Length = 360 Score = 45.9 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 21/42 (50%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 R L++ F ++ I +S E L + GI + A I++ + Sbjct: 307 IRNLVEKFSNLQGILNASIEELDDVAGIGEVRARIIWDGLRR 348 >gi|224025865|ref|ZP_03644231.1| hypothetical protein BACCOPRO_02607 [Bacteroides coprophilus DSM 18228] gi|224019101|gb|EEF77099.1| hypothetical protein BACCOPRO_02607 [Bacteroides coprophilus DSM 18228] Length = 665 Score = 45.9 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 28/52 (53%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G + + ++F ++ +++++ + L ++ I +KIA I +F + + Sbjct: 515 VGETVAKKVAKAFTSIDALAQATLDDLIHVDEIGEKIAQSIRLYFSDEKNRS 566 >gi|332532506|ref|ZP_08408384.1| DNA ligase [Pseudoalteromonas haloplanktis ANT/505] gi|332038149|gb|EGI74596.1| DNA ligase [Pseudoalteromonas haloplanktis ANT/505] Length = 672 Score = 45.9 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 14/77 (18%) Query: 548 RRKKAAYSPLDEING-----------I---GPLRKRLLLQSFGTVKMISRSSPETLASIE 593 + K + L+E G I G + L F T++ I +S ++L + Sbjct: 491 KSAKNLVTALEEAKGTTLAKFLYSLGIREAGEATAQNLANHFLTLENIINASIDSLTQVS 550 Query: 594 GISKKIACKIYNHFHKN 610 + + +A + F + Sbjct: 551 DVGEIVATHVRGFFDEE 567 >gi|312795310|ref|YP_004028232.1| DNA repair protein radC [Burkholderia rhizoxinica HKI 454] gi|312167085|emb|CBW74088.1| DNA repair protein radC [Burkholderia rhizoxinica HKI 454] Length = 239 Score = 45.9 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 11/62 (17%) Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI------ACKI-YNHFHKNTSHT 614 G+G + LL FG+++ + +S + L + GI A +I + + Sbjct: 60 GLG----QQLLARFGSLRGLFSASHDELIQVTGIGPAKIARLQAATEIARRALGEQSREQ 115 Query: 615 PT 616 T Sbjct: 116 AT 117 >gi|194289797|ref|YP_002005704.1| DNA ligase [Cupriavidus taiwanensis LMG 19424] gi|254781303|sp|B3R2C2|DNLJ_CUPTR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|193223632|emb|CAQ69639.1| DNA ligase [Cupriavidus taiwanensis LMG 19424] Length = 709 Score = 45.9 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 20/51 (39%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G + L + FG + + + L + + +A I + F + Sbjct: 548 GIRHVGEATAKDLARHFGKLDALMAADEAALLEVNDVGPVVAQSIAHFFAE 598 >gi|113868039|ref|YP_726528.1| NAD-dependent DNA ligase [Ralstonia eutropha H16] gi|123133949|sp|Q0KA11|DNLJ_RALEH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|113526815|emb|CAJ93160.1| NAD-dependent DNA ligase [Ralstonia eutropha H16] Length = 709 Score = 45.9 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 20/51 (39%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G + L + FG + + + L + + +A I + F + Sbjct: 548 GIRHVGEATAKDLARHFGKLDALMAADEAALLEVNDVGPVVAQSIAHFFAE 598 >gi|30249713|ref|NP_841783.1| NAD-dependent DNA ligase [Nitrosomonas europaea ATCC 19718] gi|75540341|sp|Q82TW6|DNLJ_NITEU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|30180750|emb|CAD85664.1| NAD-dependent DNA ligase [Nitrosomonas europaea ATCC 19718] Length = 681 Score = 45.9 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 19/51 (37%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G + L G + + + E L I I +A I + F + Sbjct: 519 GIRHVGEATAKALASHTGDLDRLMDMNAEQLQQIPDIGPIVAQSIADFFSE 569 >gi|159040191|ref|YP_001539444.1| DNA integrity scanning protein DisA [Salinispora arenicola CNS-205] gi|157919026|gb|ABW00454.1| protein of unknown function DUF147 [Salinispora arenicola CNS-205] Length = 391 Score = 45.9 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 19/38 (50%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L+ FG+++ + ++ E L ++EG+ A + Sbjct: 341 RLVGHFGSLQRLLGATVEDLQAVEGVGDARARGVREGL 378 >gi|145596779|ref|YP_001161076.1| DNA integrity scanning protein DisA [Salinispora tropica CNB-440] gi|145306116|gb|ABP56698.1| protein of unknown function DUF147 [Salinispora tropica CNB-440] Length = 391 Score = 45.9 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 19/38 (50%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L+ FG+++ + ++ E L ++EG+ A + Sbjct: 341 RLVGHFGSLQRLLGATVEDLQAVEGVGDARARGVREGL 378 >gi|289422779|ref|ZP_06424617.1| competence protein ComEA helix-hairpin-helix repeat protein [Peptostreptococcus anaerobius 653-L] gi|289156809|gb|EFD05436.1| competence protein ComEA helix-hairpin-helix repeat protein [Peptostreptococcus anaerobius 653-L] Length = 243 Score = 45.9 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 14/60 (23%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L+EI G+GP + ++ F ++ E + ++ GI K + + Sbjct: 187 ADQTKLEEIPGVGPATAKKIIDYRQTSGGFKSI--------EDIKNVTGIGDKKFENMKD 238 >gi|89889674|ref|ZP_01201185.1| Smf protein, DNA processing chain A [Flavobacteria bacterium BBFL7] gi|89517947|gb|EAS20603.1| Smf protein, DNA processing chain A [Flavobacteria bacterium BBFL7] Length = 364 Score = 45.9 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 23/43 (53%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 IG + + L+++FG+ + S +A+IEGI K A I Sbjct: 18 IGDIMAKKLIRTFGSATAVFEQSMREIAAIEGIGDKKAQFIKA 60 >gi|329297490|ref|ZP_08254826.1| NAD-dependent DNA ligase LigA [Plautia stali symbiont] Length = 672 Score = 45.9 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 8/50 (16%), Positives = 23/50 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FG ++ + + + L +++ + K +A + N + ++ Sbjct: 520 VGEATAANLANHFGELEKVMNADLDALIAVQDVGKVVAAHVRNFMEEESN 569 >gi|312077422|ref|XP_003141297.1| helix-hairpin-helix domain-containing protein family protein [Loa loa] gi|307763540|gb|EFO22774.1| helix-hairpin-helix domain-containing protein family protein [Loa loa] Length = 253 Score = 45.9 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 19/40 (47%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 + L+ FG+++ I+ + + L G+ A IY F Sbjct: 208 QRLIAIFGSIRRIANADIDRLLLCPGLGPTKAGNIYAFFR 247 >gi|229015686|ref|ZP_04172669.1| DNA ligase [Bacillus cereus AH1273] gi|229021878|ref|ZP_04178448.1| DNA ligase [Bacillus cereus AH1272] gi|228739424|gb|EEL89850.1| DNA ligase [Bacillus cereus AH1272] gi|228745603|gb|EEL95622.1| DNA ligase [Bacillus cereus AH1273] Length = 669 Score = 45.9 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDELVKATEEELKTINEIGEKMAQSVVTYFDNED 564 >gi|212710592|ref|ZP_03318720.1| hypothetical protein PROVALCAL_01658 [Providencia alcalifaciens DSM 30120] gi|212686673|gb|EEB46201.1| hypothetical protein PROVALCAL_01658 [Providencia alcalifaciens DSM 30120] Length = 678 Score = 45.9 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 9/66 (13%), Positives = 27/66 (40%), Gaps = 6/66 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I +G L + ++ + + ++L +++ I + +A + Sbjct: 508 KSKQTTLARFIYALGIREVGEATAANLAAHYASLDAVMAADEDSLKTVQDIGEVVAKHVV 567 Query: 605 NHFHKN 610 + F + Sbjct: 568 HFFREE 573 >gi|282892421|ref|ZP_06300771.1| hypothetical protein pah_c253o048 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281497823|gb|EFB40184.1| hypothetical protein pah_c253o048 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 200 Score = 45.9 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 3/56 (5%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTV---KMISRSSPETLASIEGISKKIACKI 603 + + L ++GIGP L+ + I TL+ + G+ KK A ++ Sbjct: 69 RELFEILLAVSGIGPKTAIALIGHLPSTLLSAAIQGQDITTLSKVPGVGKKTAERL 124 >gi|229009789|ref|ZP_04167009.1| DNA ligase [Bacillus mycoides DSM 2048] gi|228751407|gb|EEM01213.1| DNA ligase [Bacillus mycoides DSM 2048] Length = 669 Score = 45.9 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDELVKATEEELKTINEIGEKMAQSVVTYFDNED 564 >gi|227538460|ref|ZP_03968509.1| SMF family DNA processing protein [Sphingobacterium spiritivorum ATCC 33300] gi|227241646|gb|EEI91661.1| SMF family DNA processing protein [Sphingobacterium spiritivorum ATCC 33300] Length = 370 Score = 45.9 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 25/48 (52%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 L ++ GIGP R LL V+ I +S + L +I GI+ I ++ Sbjct: 8 ALTKVKGIGPRLSRSLLSHCDAVEAIFTASKKQLLTIPGINMAIIERL 55 >gi|325690140|gb|EGD32144.1| competence protein CelA [Streptococcus sanguinis SK115] Length = 239 Score = 45.9 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 A + L I+GIG R ++ + S + L + GI K K+ + Sbjct: 183 ATETELQTISGIGQKRASDIIAYRESNGRFK--SVDDLKKVSGIGDKTLEKLKEY 235 >gi|317485271|ref|ZP_07944151.1| DNA ligase [Bilophila wadsworthia 3_1_6] gi|316923397|gb|EFV44603.1| DNA ligase [Bilophila wadsworthia 3_1_6] Length = 698 Score = 45.9 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 2/69 (2%) Query: 546 RKRRKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 R +++ L I +G + L ++ + ++ +SPE L ++ I ++A I Sbjct: 512 RAKKEATLQRLLCALGIRHVGEQTAKTLAATYADMDVLRAASPEELQNLPDIGPEVASSI 571 Query: 604 YNHFHKNTS 612 F + Sbjct: 572 KAFFDDEPN 580 >gi|15618522|ref|NP_224808.1| DNA polymerase I [Chlamydophila pneumoniae CWL029] gi|15836144|ref|NP_300668.1| DNA polymerase I [Chlamydophila pneumoniae J138] gi|16752428|ref|NP_444687.1| DNA polymerase I [Chlamydophila pneumoniae AR39] gi|4376908|gb|AAD18751.1| DNA Polymerase I [Chlamydophila pneumoniae CWL029] gi|7189071|gb|AAF38018.1| DNA polymerase I [Chlamydophila pneumoniae AR39] gi|8978984|dbj|BAA98819.1| DNA polymerase I [Chlamydophila pneumoniae J138] Length = 870 Score = 45.9 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 7/45 (15%) Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 D I G+ GP + LL+ FG+V+ + E L +++G+S+ + Sbjct: 185 DNIPGLPGCGPKKAAALLKQFGSVEGL----LENLDAVKGLSQTM 225 >gi|313637419|gb|EFS02883.1| DNA ligase, NAD-dependent [Listeria seeligeri FSL S4-171] Length = 671 Score = 45.9 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G + L F T+ + + ETL SI I +K+A I +F Sbjct: 508 GIRHVGAKAAKSLAIHFETMDNLKLADKETLTSINDIGEKMADSIVTYFANEE 560 >gi|289435095|ref|YP_003464967.1| DNA ligase, NAD-dependent [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171339|emb|CBH27881.1| DNA ligase, NAD-dependent [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 671 Score = 45.9 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G + L F T+ + + ETL SI I +K+A I +F Sbjct: 508 GIRHVGAKAAKSLAIHFETMDNLKLADKETLTSINDIGEKMADSIVTYFANEE 560 >gi|262165212|ref|ZP_06032949.1| DNA ligase [Vibrio mimicus VM223] gi|262024928|gb|EEY43596.1| DNA ligase [Vibrio mimicus VM223] Length = 682 Score = 45.9 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 24/52 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L Q F T+ I+++S + L + + +A ++ F ++ + Sbjct: 532 VGEATALNLAQHFLTLDAIAQASMDQLIEVPDVGGVVASHLHAFFAQSRNQQ 583 >gi|262172020|ref|ZP_06039698.1| DNA ligase [Vibrio mimicus MB-451] gi|261893096|gb|EEY39082.1| DNA ligase [Vibrio mimicus MB-451] Length = 670 Score = 45.9 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 24/52 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L Q F T+ I+++S + L + + +A ++ F ++ + Sbjct: 520 VGEATALNLAQHFLTLDAIAQASMDQLIEVPDVGGVVASHLHAFFAQSRNQQ 571 >gi|258621988|ref|ZP_05717017.1| DNA ligase [Vibrio mimicus VM573] gi|258585741|gb|EEW10461.1| DNA ligase [Vibrio mimicus VM573] Length = 670 Score = 45.9 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 24/52 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L Q F T+ I+++S + L + + +A ++ F ++ + Sbjct: 520 VGEATALNLAQHFLTLDAIAQASMDQLIEVPDVGGVVASHLHAFFAQSRNQQ 571 >gi|258627076|ref|ZP_05721872.1| DNA ligase [Vibrio mimicus VM603] gi|258580594|gb|EEW05547.1| DNA ligase [Vibrio mimicus VM603] Length = 670 Score = 45.9 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 24/52 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L Q F T+ I+++S + L + + +A ++ F ++ + Sbjct: 520 VGEATALNLAQHFLTLDAIAQASMDQLIEVPDVGGVVASHLHAFFAQSRNQQ 571 >gi|229055132|ref|ZP_04195560.1| DNA ligase [Bacillus cereus AH603] gi|228721208|gb|EEL72737.1| DNA ligase [Bacillus cereus AH603] Length = 669 Score = 45.9 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDELVKATEEELKTINEIGEKMAQSVVTYFDNED 564 >gi|229131294|ref|ZP_04260196.1| DNA ligase [Bacillus cereus BDRD-ST196] gi|228652180|gb|EEL08115.1| DNA ligase [Bacillus cereus BDRD-ST196] Length = 669 Score = 45.9 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDELVKATEEELKTINEIGEKMAQSVVTYFDNED 564 >gi|148989162|ref|ZP_01820552.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP6-BS73] gi|147925385|gb|EDK76463.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP6-BS73] Length = 251 Score = 45.9 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G +LLLQ F +++ + ++ E +ASIE + IA + +F S Sbjct: 101 GIRHVGSKASQLLLQYFHSIENLYQADSEEVASIESLGGVIAKSLQTYFAAEGSE 155 >gi|15903068|ref|NP_358618.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae R6] gi|116516470|ref|YP_816476.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae D39] gi|81449679|sp|Q8DPS9|DNLJ_STRR6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|122278638|sp|Q04KH2|DNLJ_STRP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|15458641|gb|AAK99828.1| DNA ligase [Streptococcus pneumoniae R6] gi|116077046|gb|ABJ54766.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae D39] Length = 652 Score = 45.9 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G +LLLQ F +++ + ++ E +ASIE + IA + +F S Sbjct: 502 GIRHVGSKASQLLLQYFHSIENLYQADSEEVASIESLGGVIAKSLQTYFAAEGSE 556 >gi|163938297|ref|YP_001643181.1| NAD-dependent DNA ligase LigA [Bacillus weihenstephanensis KBAB4] gi|229165272|ref|ZP_04293059.1| DNA ligase [Bacillus cereus AH621] gi|254781256|sp|A9VRG3|DNLJ_BACWK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|163860494|gb|ABY41553.1| DNA ligase, NAD-dependent [Bacillus weihenstephanensis KBAB4] gi|228618097|gb|EEK75135.1| DNA ligase [Bacillus cereus AH621] Length = 669 Score = 45.9 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R + F T+ + +++ E L +I I +K+A + +F Sbjct: 512 GIRHVGAKAARTFAEHFETMDELVKATEEELKTINEIGEKMAQSVVTYFDNED 564 >gi|325694058|gb|EGD35976.1| competence protein CelA [Streptococcus sanguinis SK150] Length = 244 Score = 45.9 bits (107), Expect = 0.023, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 A + L I+GIG R ++ + S + L + GI K K+ + Sbjct: 188 ATETELQTISGIGQKRASDIIAYRESNGRFK--SVDDLKKVSGIGDKTLEKLKEY 240 >gi|302389831|ref|YP_003825652.1| PHP domain protein [Thermosediminibacter oceani DSM 16646] gi|302200459|gb|ADL08029.1| PHP domain protein [Thermosediminibacter oceani DSM 16646] Length = 390 Score = 45.9 bits (107), Expect = 0.023, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNH 606 PL+ I G+G LL++FG + +I S PE L + G + + K+ Sbjct: 321 PLEFIPGVGKKTLERLLKAFGNEMNIIHHSDPEELRKVVG--EAVTEKVLAA 370 >gi|148270820|ref|YP_001245280.1| helix-hairpin-helix repeat-containing competence protein ComEA [Thermotoga petrophila RKU-1] gi|147736364|gb|ABQ47704.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermotoga petrophila RKU-1] Length = 181 Score = 45.9 bits (107), Expect = 0.023, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 L I GIGP++ + ++ + S S E L ++ GI +K KI Sbjct: 57 LMSIPGIGPVKAQRIIDYRESHGGFS--SVEELKNVSGIGEKTLEKI 101 Score = 38.2 bits (87), Expect = 4.4, Method: Composition-based stats. Identities = 9/23 (39%), Positives = 13/23 (56%) Query: 584 SSPETLASIEGISKKIACKIYNH 606 +S E L SI GI A +I ++ Sbjct: 52 ASLEDLMSIPGIGPVKAQRIIDY 74 >gi|160935782|ref|ZP_02083157.1| hypothetical protein CLOBOL_00672 [Clostridium bolteae ATCC BAA-613] gi|158441526|gb|EDP19236.1| hypothetical protein CLOBOL_00672 [Clostridium bolteae ATCC BAA-613] Length = 651 Score = 45.9 bits (107), Expect = 0.023, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 559 EINGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKIYNHF 607 I GIG ++L + F + + E L +++GI +A ++F Sbjct: 497 GIAGIGLANAKMLCREFKYDFDKMRHAGEEELVAVDGIGGVLAQAWMDYF 546 >gi|257387893|ref|YP_003177666.1| ribosomal protein L32e [Halomicrobium mukohataei DSM 12286] gi|257170200|gb|ACV47959.1| Ribosomal protein L32e [Halomicrobium mukohataei DSM 12286] Length = 240 Score = 45.9 bits (107), Expect = 0.023, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 554 YSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605 + L +I+G+G + L ++ F TV + + LA++ G+ +A +I Sbjct: 15 LTELTDISGVGDSKAEALREAGFETVDDVRGADQSQLANVSGVGNALAARIKA 67 >gi|94986686|ref|YP_594619.1| NAD-dependent DNA ligase [Lawsonia intracellularis PHE/MN1-00] gi|123385090|sp|Q1MRS8|DNLJ_LAWIP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|94730935|emb|CAJ54298.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Lawsonia intracellularis PHE/MN1-00] Length = 682 Score = 45.9 bits (107), Expect = 0.023, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 23/54 (42%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G R+L SF + +S +S E L + I ++A I F + Sbjct: 528 GIRHVGEQTARILASSFIDLDALSSASLEDLQQLSEIGPEVASSIQAFFKNKAN 581 >gi|238061426|ref|ZP_04606135.1| DNA integrity scanning protein disA [Micromonospora sp. ATCC 39149] gi|237883237|gb|EEP72065.1| DNA integrity scanning protein disA [Micromonospora sp. ATCC 39149] Length = 373 Score = 45.9 bits (107), Expect = 0.023, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 19/38 (50%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L+ FG+++ + ++ E L ++EG+ A + Sbjct: 323 RLVLHFGSLQRLLGATVEDLQAVEGVGDARARGVREGL 360 >gi|149195333|ref|ZP_01872420.1| DNA polymerase X family/PHP domain protein [Caminibacter mediatlanticus TB-2] gi|149134525|gb|EDM23014.1| DNA polymerase X family/PHP domain protein [Caminibacter mediatlanticus TB-2] Length = 567 Score = 45.9 bits (107), Expect = 0.023, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 3/50 (6%) Query: 559 EINGIGPLRKRLLLQSFG--TVKMISR-SSPETLASIEGISKKIACKIYN 605 I G+GP R R + +F ++ + + + L + G K+ KI Sbjct: 97 SIEGLGPKRIRQIYDAFKVTSLDELKKYAESGELDKLPGFGPKLIEKILK 146 >gi|50914521|ref|YP_060493.1| COME operon protein 1 [Streptococcus pyogenes MGAS10394] gi|50903595|gb|AAT87310.1| COME operon protein 1 [Streptococcus pyogenes MGAS10394] Length = 220 Score = 45.9 bits (107), Expect = 0.023, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 8/58 (13%) Query: 551 KAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 KA+ L I GIG R + ++ G K + E L GI +K K+ + Sbjct: 163 KASLEELQHIPGIGAKRAQDIIDMRDKLGGFKAL-----EDLRQASGIGEKTLEKLKD 215 >gi|85859218|ref|YP_461420.1| SMF family protein involved in DNA uptake [Syntrophus aciditrophicus SB] gi|85722309|gb|ABC77252.1| SMF family protein involved in DNA uptake [Syntrophus aciditrophicus SB] Length = 394 Score = 45.9 bits (107), Expect = 0.023, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L +NGIG L R L+ +F + +S + L S+ GI K A +I FH+ Sbjct: 11 ALRSVNGIGNLGFRSLMDAFKFPHDVFHASYQDLMSVPGIGPKTASRIK-AFHE 63 >gi|150388557|ref|YP_001318606.1| RecD/TraA family helicase [Alkaliphilus metalliredigens QYMF] gi|149948419|gb|ABR46947.1| helicase, RecD/TraA family [Alkaliphilus metalliredigens QYMF] Length = 754 Score = 45.9 bits (107), Expect = 0.023, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I G+G ++ FG ++++I + PE L +EGI + A I F Sbjct: 96 IKGVGKKMAERIVDLFGMDSLEVIQYA-PERLREVEGIGRAKAETITETFR 145 >gi|319956495|ref|YP_004167758.1| holliday junction DNA helicase subunit ruva [Nitratifractor salsuginis DSM 16511] gi|319418899|gb|ADV46009.1| Holliday junction DNA helicase subunit RuvA [Nitratifractor salsuginis DSM 16511] Length = 187 Score = 45.5 bits (106), Expect = 0.024, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Query: 548 RRKKAAYSPLDEINGIGPLRKRLLLQSF--GTVKMISRS-SPETLASIEGISKKIACKIY 604 R +K + L +ING+GP + + +F + I + L + GI K A +I Sbjct: 65 RNEKKMFDTLLKINGVGPKVAQAVCSTFTPESFAKIVAAKDVALLKRVPGIGPKAASRIL 124 >gi|313632855|gb|EFR99806.1| DNA ligase, NAD-dependent [Listeria seeligeri FSL N1-067] Length = 678 Score = 45.5 bits (106), Expect = 0.024, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G + L F T+ + + ETL SI I +K+A I +F Sbjct: 515 GIRHVGAKAAKSLAIHFETMDNLKLADKETLTSINDIGEKMADSIVTYFANEE 567 >gi|57233728|ref|YP_182165.1| RadC family DNA repair protein [Dehalococcoides ethenogenes 195] gi|57224176|gb|AAW39233.1| DNA repair protein, RadC family [Dehalococcoides ethenogenes 195] Length = 271 Score = 45.5 bits (106), Expect = 0.024, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 16/72 (22%) Query: 542 ITTHRKR-RKKAAYSPLDEING---------IGPLRK------RLLLQSFGTVKMISRSS 585 HR+R R++ + LD +N +G R+ + ++ FG+++ + +S Sbjct: 19 NAGHRQRLRERFLKAGLDGLNDYEVVDLLLTLGTPRRDCKQAAKEAIKHFGSLRAVLEAS 78 Query: 586 PETLASIEGISK 597 P L+SI+GI + Sbjct: 79 PAELSSIKGIGE 90 >gi|295132395|ref|YP_003583071.1| DNA polymerase I [Zunongwangia profunda SM-A87] gi|294980410|gb|ADF50875.1| DNA polymerase I [Zunongwangia profunda SM-A87] Length = 941 Score = 45.5 bits (106), Expect = 0.024, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 18/73 (24%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA-----SIE-----GI-SKKIACKI 603 D I G +G + L+ FG+++ + ++ + L +E GI SKK+A I Sbjct: 193 DNIPGLPGVGEKTAKKFLKQFGSMEELL-ANTDQLKGKMREKVETNAEQGILSKKLARII 251 Query: 604 YN---HFHKNTSH 613 + FH Sbjct: 252 IDCDVKFHAEDYE 264 >gi|290893414|ref|ZP_06556399.1| DNA ligase [Listeria monocytogenes FSL J2-071] gi|290557065|gb|EFD90594.1| DNA ligase [Listeria monocytogenes FSL J2-071] Length = 671 Score = 45.5 bits (106), Expect = 0.024, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G + L F T+ + + ETL SI I +K+A I +F Sbjct: 508 GIRHVGAKAAKSLAIHFDTMDNLKVADKETLTSINDIGEKMADSIVTYFANEE 560 >gi|217964094|ref|YP_002349772.1| DNA ligase, NAD-dependent [Listeria monocytogenes HCC23] gi|254781360|sp|B8DFG5|DNLJ_LISMH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|217333364|gb|ACK39158.1| DNA ligase, NAD-dependent [Listeria monocytogenes HCC23] gi|307571338|emb|CAR84517.1| DNA ligase, NAD-dependent [Listeria monocytogenes L99] Length = 671 Score = 45.5 bits (106), Expect = 0.024, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G + L F T+ + + ETL SI I +K+A I +F Sbjct: 508 GIRHVGAKAAKSLAIHFDTMDNLKVADKETLTSINDIGEKMADSIVTYFANEE 560 >gi|15678832|ref|NP_275949.1| DNA helicase related protein [Methanothermobacter thermautotrophicus str. Delta H] gi|18201992|sp|O26901|HELS_METTH RecName: Full=Putative ski2-type helicase gi|2621900|gb|AAB85310.1| DNA helicase related protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 690 Score = 45.5 bits (106), Expect = 0.024, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 8/55 (14%) Query: 558 DEIN------GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 D I G+G +R R ++++FG + + + L I+GI K+A I + Sbjct: 634 DAIPLVVGVRGLGRVRARKIIKTFG--EDLRHVREDELKRIDGIGPKMAGAIRRY 686 >gi|306829554|ref|ZP_07462744.1| NAD-dependent DNA ligase LigA [Streptococcus mitis ATCC 6249] gi|304428640|gb|EFM31730.1| NAD-dependent DNA ligase LigA [Streptococcus mitis ATCC 6249] Length = 652 Score = 45.5 bits (106), Expect = 0.024, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 29/49 (59%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G +LLLQ F T++ ++++ PE +ASIE + IA + +F Sbjct: 502 GIRHVGSKASQLLLQHFHTIENLAQADPEEVASIESLGSVIAQGLQTYF 550 >gi|261856718|ref|YP_003264001.1| competence protein ComEA helix-hairpin-helix repeat protein [Halothiobacillus neapolitanus c2] gi|261837187|gb|ACX96954.1| competence protein ComEA helix-hairpin-helix repeat protein [Halothiobacillus neapolitanus c2] Length = 100 Score = 45.5 bits (106), Expect = 0.024, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 16/72 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYNH 606 A + LDE+ GIGP ++ + S + L ++GI K K+ +H Sbjct: 34 ATQAQLDEVKGIGPKLSAAIVAY-------REAHHGFKSVDELKEVKGIGDKSFLKLKDH 86 Query: 607 F----HKNTSHT 614 F H+ + T Sbjct: 87 FVVEGHQKPAAT 98 >gi|46907988|ref|YP_014377.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes serotype 4b str. F2365] gi|81565576|sp|Q71YR0|DNLJ_LISMF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|46881258|gb|AAT04554.1| DNA ligase, NAD-dependent [Listeria monocytogenes serotype 4b str. F2365] Length = 671 Score = 45.5 bits (106), Expect = 0.024, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G + L F T+ + + ETL SI I +K+A I +F Sbjct: 508 GIRHVGAKAAKSLAIHFDTMDNLKVADKETLTSINDIGEKMADSIVTYFANEE 560 >gi|47092911|ref|ZP_00230693.1| DNA ligase, NAD-dependent [Listeria monocytogenes str. 4b H7858] gi|254825997|ref|ZP_05230998.1| DNA ligase [Listeria monocytogenes FSL J1-194] gi|254853668|ref|ZP_05243016.1| DNA ligase [Listeria monocytogenes FSL R2-503] gi|254932796|ref|ZP_05266155.1| DNA ligase [Listeria monocytogenes HPB2262] gi|300765954|ref|ZP_07075926.1| DNA ligase, NAD-dependent [Listeria monocytogenes FSL N1-017] gi|47018737|gb|EAL09488.1| DNA ligase, NAD-dependent [Listeria monocytogenes str. 4b H7858] gi|258607047|gb|EEW19655.1| DNA ligase [Listeria monocytogenes FSL R2-503] gi|293584349|gb|EFF96381.1| DNA ligase [Listeria monocytogenes HPB2262] gi|293595236|gb|EFG02997.1| DNA ligase [Listeria monocytogenes FSL J1-194] gi|300513340|gb|EFK40415.1| DNA ligase, NAD-dependent [Listeria monocytogenes FSL N1-017] gi|328466510|gb|EGF37653.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 1816] gi|328473899|gb|EGF44721.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 220] gi|332312198|gb|EGJ25293.1| DNA ligase [Listeria monocytogenes str. Scott A] Length = 671 Score = 45.5 bits (106), Expect = 0.024, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G + L F T+ + + ETL SI I +K+A I +F Sbjct: 508 GIRHVGAKAAKSLAIHFDTMDNLKVADKETLTSINDIGEKMADSIVTYFANEE 560 >gi|226224361|ref|YP_002758468.1| DNA ligase [Listeria monocytogenes Clip81459] gi|254781359|sp|C1KW57|DNLJ_LISMC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|225876823|emb|CAS05532.1| Putative DNA ligase [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 671 Score = 45.5 bits (106), Expect = 0.024, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G + L F T+ + + ETL SI I +K+A I +F Sbjct: 508 GIRHVGAKAAKSLAIHFDTMDNLKVADKETLTSINDIGEKMADSIVTYFANEE 560 >gi|170290897|ref|YP_001737713.1| ERCC4 domain-containing protein [Candidatus Korarchaeum cryptofilum OPF8] gi|170174977|gb|ACB08030.1| ERCC4 domain protein [Candidatus Korarchaeum cryptofilum OPF8] Length = 215 Score = 45.5 bits (106), Expect = 0.024, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 5/66 (7%) Query: 546 RKRRKKA---AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 R+R+ K+ AYS L IGP L+ F ++ I + L S+ I + A K Sbjct: 137 RRRKAKSFEEAYSILLSFPSIGPKSAEKLMSEFKNLREIFNADFPKLKSL--IGEAKARK 194 Query: 603 IYNHFH 608 + Sbjct: 195 FREVLN 200 >gi|194335632|ref|YP_002017426.1| DNA ligase, NAD-dependent [Pelodictyon phaeoclathratiforme BU-1] gi|254781384|sp|B4SCX5|DNLJ_PELPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|194308109|gb|ACF42809.1| DNA ligase, NAD-dependent [Pelodictyon phaeoclathratiforme BU-1] Length = 674 Score = 45.5 bits (106), Expect = 0.024, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 11/114 (9%) Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL-RDEAHRFAITTHRKRRKKAAYS 555 +AKG + G + +F+++ + L P Q + R A+ R++ + Sbjct: 470 VAKGLVKDPG-DLYFLQEPQLEKLERMGPKSA--QNILR------ALEKSREKSYERLLY 520 Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L I +G R L Q+ ++ ++ +S E LA+I I +A I ++F K Sbjct: 521 AL-GIRHVGRATARELSQACPSIDLLREASEEQLATIPDIGPVVARSIIDYFAK 573 >gi|313618396|gb|EFR90422.1| DNA ligase [Listeria innocua FSL S4-378] Length = 303 Score = 45.5 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G + L F T+ + + ETL SI I +K+A I +F Sbjct: 140 GIRHVGAKAAKSLAVHFETMDNLKIADKETLTSINDIGEKMADSIVTYFANEE 192 >gi|242003235|ref|XP_002422661.1| DNA excision repair protein ERCC-1, putative [Pediculus humanus corporis] gi|212505472|gb|EEB09923.1| DNA excision repair protein ERCC-1, putative [Pediculus humanus corporis] Length = 260 Score = 45.5 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%) Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 S L I I +LL ++GT++ I ++S +L+ GI + A ++Y H++ Sbjct: 163 SALITIRSINKTDATILLSTYGTLRGILKASENSLSLCPGIGPQKASRLYKTLHES 218 >gi|304312656|ref|YP_003812254.1| DNA ligase, NAD-dependent [gamma proteobacterium HdN1] gi|301798389|emb|CBL46613.1| DNA ligase, NAD-dependent [gamma proteobacterium HdN1] Length = 677 Score = 45.5 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 18/45 (40%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + L + + T+ + R+ +L + I A I F Sbjct: 524 VGEATAQTLARHYETLDALLRADEASLLEVPDIGPVSARNIVQFF 568 >gi|89099042|ref|ZP_01171921.1| hypothetical protein B14911_08582 [Bacillus sp. NRRL B-14911] gi|89086172|gb|EAR65294.1| hypothetical protein B14911_08582 [Bacillus sp. NRRL B-14911] Length = 390 Score = 45.5 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%) Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNH 606 PL+ I G+GP LL FGT + ++ R E L + I K+A I Sbjct: 320 PLEFIPGLGPKILERLLDHFGTEMDILHRVPKEALEEV--IPDKLARLIVKA 369 >gi|313113935|ref|ZP_07799492.1| DNA repair protein RadC [Faecalibacterium cf. prausnitzii KLE1255] gi|310623730|gb|EFQ07128.1| DNA repair protein RadC [Faecalibacterium cf. prausnitzii KLE1255] Length = 247 Score = 45.5 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 17/34 (50%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 L+ FG + +S E L ++EG+ A ++ Sbjct: 60 LIDRFGDFAAVLEASEEELCTVEGVGPATARMLH 93 >gi|284037272|ref|YP_003387202.1| DNA protecting protein DprA [Spirosoma linguale DSM 74] gi|283816565|gb|ADB38403.1| DNA protecting protein DprA [Spirosoma linguale DSM 74] Length = 370 Score = 45.5 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 21/50 (42%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 L + G+G + R L+ G+ + RS L + GI + A I Sbjct: 10 ALTLVPGVGSILIRQLISYCGSAADVFRSPLARLTKVPGIGEVTARAILK 59 >gi|18181989|dbj|BAB83902.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] Length = 319 Score = 45.5 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Query: 559 EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACK 602 ++ G+GP + L+++ + T++ I+ ++P+ ++ GI A K Sbjct: 13 DLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQK 57 >gi|242238286|ref|YP_002986467.1| NAD-dependent DNA ligase LigA [Dickeya dadantii Ech703] gi|242130343|gb|ACS84645.1| DNA ligase, NAD-dependent [Dickeya dadantii Ech703] Length = 684 Score = 45.5 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 8/52 (15%), Positives = 20/52 (38%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L FGT+ + + +TL + + +A + + + + Sbjct: 531 VGEATAAGLAAHFGTLDALMTADVDTLQQVPDVGIVVATHVRHFLDEEHNQQ 582 >gi|197120145|ref|YP_002140572.1| DNA repair protein RadC [Geobacter bemidjiensis Bem] gi|197089505|gb|ACH40776.1| protein of unknown function DUF2466 [Geobacter bemidjiensis Bem] Length = 231 Score = 45.5 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 8/56 (14%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + S LD +G R L+ FG++ +++ +S L ++GI A I Sbjct: 43 SRRSALD----LG----RELMLQFGSLSLLADASCSELQKVKGIGPAKATCILAAL 90 >gi|254993539|ref|ZP_05275729.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL J2-064] Length = 665 Score = 45.5 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G + L F T+ + + ETL SI I +K+A I +F Sbjct: 508 GIRHVGAKAAKSLAIHFDTMDNLKVADKETLTSINDIGEKMADSIVTYFANEE 560 >gi|257077037|ref|ZP_05571398.1| ski2-like helicase [Ferroplasma acidarmanus fer1] Length = 681 Score = 45.5 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Query: 561 NGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605 +G +R R L + F ++ I+ + E ++ I G S K+A I Sbjct: 625 PQVGRVRGRRLYNNGFKSIDDIANARVEDISRIFGFSTKLAKDIIE 670 >gi|86143308|ref|ZP_01061710.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide(ProFAR) isomerase [Leeuwenhoekiella blandensis MED217] gi|85830213|gb|EAQ48673.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide(ProFAR) isomerase [Leeuwenhoekiella blandensis MED217] Length = 366 Score = 45.5 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 27/89 (30%) Query: 12 VYQMLDIAGRVLYVGKAYNLQKRIKSY-------MHSNNHTHRITHMISQINNIRFTVTC 64 Y + + VLYVGK +L+ R++ + + + ++ T Sbjct: 5 CYILSNKNRTVLYVGKTRDLRTRLQQHKKGVGAVFTKKYNCY-------ELLYFETFKTG 57 Query: 65 TEVEALLLEA-----------NMIKRLKP 82 +E A E N+IK P Sbjct: 58 SE--AWQREQQLKRWHKEWKWNLIKDKNP 84 >gi|297544020|ref|YP_003676322.1| RecD/TraA family helicase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841795|gb|ADH60311.1| helicase, RecD/TraA family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 735 Score = 45.5 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 5/55 (9%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603 K S L I GIGP+ R +++ FG ++ +I + PE L I+G+S + +I Sbjct: 81 KFLASGL--IPGIGPVTARKIVKKFGVDSLNIIETA-PERLKEIKGLSDEKIKRI 132 >gi|237753409|ref|ZP_04583889.1| competence protein 1 [Helicobacter winghamensis ATCC BAA-430] gi|229375676|gb|EEO25767.1| competence protein 1 [Helicobacter winghamensis ATCC BAA-430] Length = 90 Score = 45.5 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 13/70 (18%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS-----FGTVKMISRSSPETLASIEGISKKIACKIYNH 606 A+ L + GIG ++ + +L F +V + L +++G K KI N Sbjct: 23 ASKQELMSVKGIGEIKAQAILDYRAKQPFKSV--------DELVNVKGFGDKSVEKIKNE 74 Query: 607 FHKNTSHTPT 616 F + T T Sbjct: 75 FSVSEVKTET 84 >gi|329924834|ref|ZP_08279795.1| DNA ligase (NAD+) [Paenibacillus sp. HGF5] gi|328940396|gb|EGG36721.1| DNA ligase (NAD+) [Paenibacillus sp. HGF5] Length = 670 Score = 45.5 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 5/69 (7%) Query: 541 AITTHRKRRKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 AI K +++ S L I G ++L + + + ++ E L + + Sbjct: 497 AIE---KSKERDLASFLFALGIPNTGKSTTKMLADHYRDLNRVMAATAEELVELPDVGGI 553 Query: 599 IACKIYNHF 607 +A I +F Sbjct: 554 VAESIAGYF 562 >gi|313608726|gb|EFR84551.1| ComE operon protein 1 [Listeria monocytogenes FSL F2-208] Length = 155 Score = 45.5 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 A L ++ GIG + +++ + + + + E L ++ GI +K K+ + N Sbjct: 99 ATKDDLQQVPGIGESKATAIIEH-REKEGLFQ-TIEDLKNVSGIGEKTVEKLKEYLDAN 155 Score = 38.2 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 1/32 (3%) Query: 576 GTVK-MISRSSPETLASIEGISKKIACKIYNH 606 G+ K ++ ++ + L + GI + A I H Sbjct: 90 GSAKINLNSATKDDLQQVPGIGESKATAIIEH 121 >gi|300361107|ref|ZP_07057284.1| NAD-dependent DNA ligase LigA [Lactobacillus gasseri JV-V03] gi|300353726|gb|EFJ69597.1| NAD-dependent DNA ligase LigA [Lactobacillus gasseri JV-V03] Length = 668 Score = 45.5 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 31/55 (56%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I+ +G RL+L+ + ++ +S+ + L SI+ I + IA + +F++ ++ Sbjct: 513 GIDHVGAKAARLILEKYKNLEKVSQLTVPELISIDTIGETIAESLTAYFNQPSAQ 567 >gi|225868912|ref|YP_002744860.1| competence protein [Streptococcus equi subsp. zooepidemicus] gi|225702188|emb|CAW99904.1| putative competence protein [Streptococcus equi subsp. zooepidemicus] Length = 226 Score = 45.5 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 +A+ + L I GIG R + ++ ++ S E L + GI K K+ Sbjct: 169 RASLADLQSIPGIGAKRAQDIIDVRESLGGFK--SLEDLRKVSGIGAKTLEKLK 220 >gi|261409569|ref|YP_003245810.1| NAD-dependent DNA ligase LigA [Paenibacillus sp. Y412MC10] gi|261286032|gb|ACX68003.1| DNA ligase, NAD-dependent [Paenibacillus sp. Y412MC10] Length = 670 Score = 45.5 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 5/69 (7%) Query: 541 AITTHRKRRKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 AI K +++ S L I G ++L + + + ++ E L + + Sbjct: 497 AIE---KSKERDLASFLFALGIPNTGKSTTKMLADHYRDLNRVMAATAEELVELPDVGGI 553 Query: 599 IACKIYNHF 607 +A I +F Sbjct: 554 VAESIAGYF 562 >gi|52081286|ref|YP_080077.1| DNA repair protein RadC [Bacillus licheniformis ATCC 14580] gi|52786665|ref|YP_092494.1| DNA repair protein RadC [Bacillus licheniformis ATCC 14580] gi|81690952|sp|Q65GL3|Y2933_BACLD RecName: Full=UPF0758 protein BLi02933/BL00636 gi|52004497|gb|AAU24439.1| DNA repair protein [Bacillus licheniformis ATCC 14580] gi|52349167|gb|AAU41801.1| RadC [Bacillus licheniformis ATCC 14580] Length = 224 Score = 45.5 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 22/38 (57%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 LLQ+F ++++ +S E L+SI GI + A +I Sbjct: 49 RLLQTFDGLRLLKEASAEELSSISGIGRAKAVQILAAL 86 >gi|226311419|ref|YP_002771313.1| DNA repair protein RadC [Brevibacillus brevis NBRC 100599] gi|226094367|dbj|BAH42809.1| probable DNA repair protein RadC [Brevibacillus brevis NBRC 100599] Length = 232 Score = 45.5 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 22/39 (56%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + LL FG ++ ++++S L ++GI A +++ F Sbjct: 56 QRLLARFGDLRGLAQASHAELTELKGIGPVKAIELHAAF 94 >gi|163846991|ref|YP_001635035.1| Holliday junction DNA helicase RuvA [Chloroflexus aurantiacus J-10-fl] gi|222524813|ref|YP_002569284.1| Holliday junction DNA helicase RuvA [Chloroflexus sp. Y-400-fl] gi|189045746|sp|A9WA87|RUVA_CHLAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254766952|sp|B9LCT8|RUVA_CHLSY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|163668280|gb|ABY34646.1| Holliday junction DNA helicase RuvA [Chloroflexus aurantiacus J-10-fl] gi|222448692|gb|ACM52958.1| Holliday junction DNA helicase RuvA [Chloroflexus sp. Y-400-fl] Length = 195 Score = 45.5 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 5/63 (7%) Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKIYN 605 ++ + L ++G+GP LL S G+ I +S LA + GI KK A +I Sbjct: 68 QRNLFEQLIGVSGVGPKIALNLLSS-GSPDEIQKSIAGGDIARLARVPGIGKKTAERIVL 126 Query: 606 HFH 608 Sbjct: 127 ELR 129 >gi|75760632|ref|ZP_00740661.1| DNA-binding protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218895219|ref|YP_002443630.1| putative DNA-binding protein [Bacillus cereus G9842] gi|228898837|ref|ZP_04063119.1| DNA integrity scanning protein disA [Bacillus thuringiensis IBL 4222] gi|228905881|ref|ZP_04069778.1| DNA integrity scanning protein disA [Bacillus thuringiensis IBL 200] gi|228937386|ref|ZP_04100032.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228963184|ref|ZP_04124353.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar sotto str. T04001] gi|228970272|ref|ZP_04130931.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228976842|ref|ZP_04137254.1| DNA integrity scanning protein disA [Bacillus thuringiensis Bt407] gi|229074145|ref|ZP_04207191.1| DNA integrity scanning protein disA [Bacillus cereus Rock4-18] gi|229094806|ref|ZP_04225811.1| DNA integrity scanning protein disA [Bacillus cereus Rock3-29] gi|229100882|ref|ZP_04231687.1| DNA integrity scanning protein disA [Bacillus cereus Rock3-28] gi|229113760|ref|ZP_04243195.1| DNA integrity scanning protein disA [Bacillus cereus Rock1-3] gi|226729432|sp|B7ISZ3|DISA_BACC2 RecName: Full=DNA integrity scanning protein disA gi|74491875|gb|EAO55062.1| DNA-binding protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218543142|gb|ACK95536.1| putative DNA-binding protein [Bacillus cereus G9842] gi|228669631|gb|EEL25038.1| DNA integrity scanning protein disA [Bacillus cereus Rock1-3] gi|228682536|gb|EEL36608.1| DNA integrity scanning protein disA [Bacillus cereus Rock3-28] gi|228688549|gb|EEL42422.1| DNA integrity scanning protein disA [Bacillus cereus Rock3-29] gi|228708915|gb|EEL61042.1| DNA integrity scanning protein disA [Bacillus cereus Rock4-18] gi|228782812|gb|EEM30978.1| DNA integrity scanning protein disA [Bacillus thuringiensis Bt407] gi|228789381|gb|EEM37301.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228796442|gb|EEM43881.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar sotto str. T04001] gi|228822219|gb|EEM68201.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228853696|gb|EEM98456.1| DNA integrity scanning protein disA [Bacillus thuringiensis IBL 200] gi|228860737|gb|EEN05115.1| DNA integrity scanning protein disA [Bacillus thuringiensis IBL 4222] gi|326937877|gb|AEA13773.1| DNA integrity scanning protein DisA [Bacillus thuringiensis serovar chinensis CT-43] Length = 357 Score = 45.5 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%) Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 R S + + PL L+ F T++ + R++ L +EGI + A KI Sbjct: 289 RGYRITSKISRVP---PLIIENLINRFKTLQGVCRATIHELDDVEGIGEVRAKKIREGLK 345 Query: 609 K 609 + Sbjct: 346 R 346 >gi|189461356|ref|ZP_03010141.1| hypothetical protein BACCOP_02011 [Bacteroides coprocola DSM 17136] gi|189431885|gb|EDV00870.1| hypothetical protein BACCOP_02011 [Bacteroides coprocola DSM 17136] Length = 667 Score = 45.5 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 27/50 (54%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + + ++F +++ ++ ++ + L ++ I +KIA I +F + Sbjct: 515 VGETVAKKVAKAFRSIEALASANLDDLIHVDEIGEKIAGSIIQYFANEKN 564 >gi|163751929|ref|ZP_02159142.1| DNA ligase, NAD-dependent [Shewanella benthica KT99] gi|161328212|gb|EDP99377.1| DNA ligase, NAD-dependent [Shewanella benthica KT99] Length = 690 Score = 45.5 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 6/48 (12%), Positives = 20/48 (41%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +G L F ++ + ++ E ++ + +A + + F ++ Sbjct: 540 VGEATAANLANYFKSLDKLKAANAEEFIKVDDVGTIVAQHLTHFFAQS 587 >gi|167039107|ref|YP_001662092.1| RecD/TraA family helicase [Thermoanaerobacter sp. X514] gi|300913303|ref|ZP_07130620.1| helicase, RecD/TraA family [Thermoanaerobacter sp. X561] gi|307723683|ref|YP_003903434.1| RecD/TraA family helicase [Thermoanaerobacter sp. X513] gi|166853347|gb|ABY91756.1| helicase, RecD/TraA family [Thermoanaerobacter sp. X514] gi|300889988|gb|EFK85133.1| helicase, RecD/TraA family [Thermoanaerobacter sp. X561] gi|307580744|gb|ADN54143.1| helicase, RecD/TraA family [Thermoanaerobacter sp. X513] Length = 735 Score = 45.5 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 5/55 (9%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603 K S L I GIGP+ R +++ FG ++ +I + PE L I+G+S + +I Sbjct: 81 KFLSSGL--IPGIGPVTARKIVKKFGVDSLNIIETA-PERLKEIKGLSDEKIKRI 132 >gi|91773967|ref|YP_566659.1| DNA repair and recombination protein RadA [Methanococcoides burtonii DSM 6242] gi|121691598|sp|Q12UG7|RADA_METBU RecName: Full=DNA repair and recombination protein radA gi|91712982|gb|ABE52909.1| DNA repair and recombination protein RadA [Methanococcoides burtonii DSM 6242] Length = 325 Score = 45.5 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 L++++ +GP + L + F T++ I+ +SP LA+ I + A KI N ++ Sbjct: 6 LEDLDHVGPATAQKLKDAGFTTIEAIAVASPAELANSAEIGESTAAKIINAARQSAD 62 >gi|86608809|ref|YP_477571.1| DNA ligase, NAD-dependent [Synechococcus sp. JA-2-3B'a(2-13)] gi|123724461|sp|Q2JLU3|DNLJ_SYNJB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|86557351|gb|ABD02308.1| DNA ligase, NAD-dependent [Synechococcus sp. JA-2-3B'a(2-13)] Length = 686 Score = 45.5 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 29/51 (56%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G + ++L F T ++++++S ET+A I GI ++A + F + Sbjct: 525 GIPHVGVVTAQILAGHFPTPELLAQASAETIAQIYGIGAEVAEAVVAWFAE 575 Score = 40.9 bits (94), Expect = 0.73, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Query: 559 EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +I G+G R L++S G TV + R +PE L +EG+ + + K+ ++ Sbjct: 459 DIEGLGEKRAAQLVESLGVRTVADLYRLTPEQLQGLEGMGSRSSQKLVQAIQRSRQQP 516 >gi|50122504|ref|YP_051671.1| NAD-dependent DNA ligase LigA [Pectobacterium atrosepticum SCRI1043] gi|81644069|sp|Q6D165|DNLJ_ERWCT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|49613030|emb|CAG76481.1| DNA ligase [Pectobacterium atrosepticum SCRI1043] Length = 681 Score = 45.5 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 8/52 (15%), Positives = 22/52 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L FG+++ + + + L + + K +A + + + + T Sbjct: 520 VGESTAANLAAHFGSLETLFAADEDALLEVPDVGKIVAAHVRHFLEEEHNQT 571 >gi|167038184|ref|YP_001665762.1| RecD/TraA family helicase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116593|ref|YP_004186752.1| helicase, RecD/TraA family [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857018|gb|ABY95426.1| helicase, RecD/TraA family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929684|gb|ADV80369.1| helicase, RecD/TraA family [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 735 Score = 45.5 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 5/55 (9%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603 K S L I GIGP+ R +++ FG ++ +I + PE L I+G+S + +I Sbjct: 81 KFLSSGL--IPGIGPVTARKIVKKFGVDSLNIIETA-PERLKEIKGLSDEKIKRI 132 >gi|323702066|ref|ZP_08113734.1| Holliday junction DNA helicase RuvA [Desulfotomaculum nigrificans DSM 574] gi|323532948|gb|EGB22819.1| Holliday junction DNA helicase RuvA [Desulfotomaculum nigrificans DSM 574] Length = 199 Score = 45.5 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 7/53 (13%) Query: 556 PLDEINGIGPLRKRLLLQS-----FGTVKMISRSSPETLASIEGISKKIACKI 603 L ++ G+GP ++ F + I+ + L + G+ KK A +I Sbjct: 72 ALLDVAGVGPKVALAVVAHLPPGVFKGI--IASGNVNQLVKVPGVGKKTAQRI 122 >gi|307265487|ref|ZP_07547042.1| helicase, RecD/TraA family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919441|gb|EFN49660.1| helicase, RecD/TraA family [Thermoanaerobacter wiegelii Rt8.B1] Length = 735 Score = 45.5 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 5/55 (9%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603 K S L I GIGP+ R +++ FG ++ +I + PE L I+G+S + +I Sbjct: 81 KFLSSGL--IPGIGPVTARKIVKKFGVDSLNIIETA-PERLKEIKGLSDEKIKRI 132 >gi|289577707|ref|YP_003476334.1| helicase, RecD/TraA family [Thermoanaerobacter italicus Ab9] gi|289527420|gb|ADD01772.1| helicase, RecD/TraA family [Thermoanaerobacter italicus Ab9] Length = 735 Score = 45.5 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 5/55 (9%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603 K S L I GIGP+ R +++ FG ++ +I + PE L I+G+S + +I Sbjct: 81 KFLSSGL--IPGIGPVTARKIVKKFGVDSLNIIETA-PERLKEIKGLSDEKIKRI 132 >gi|255654223|ref|ZP_05399632.1| putative DNA-binding protein [Clostridium difficile QCD-23m63] gi|296452507|ref|ZP_06894204.1| RecD/TraA family helicase [Clostridium difficile NAP08] gi|296881081|ref|ZP_06905024.1| RecD/TraA family helicase [Clostridium difficile NAP07] gi|296258612|gb|EFH05510.1| RecD/TraA family helicase [Clostridium difficile NAP08] gi|296427947|gb|EFH13851.1| RecD/TraA family helicase [Clostridium difficile NAP07] Length = 739 Score = 45.5 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I+GIG + ++ FG T+++I SPE L +EGI K +I + ++ Sbjct: 88 IHGIGEKMAKRIIDKFGVDTLEVIQN-SPEKLQEVEGIGSKKVKQIVKSYEED 139 >gi|47095684|ref|ZP_00233291.1| DNA ligase, NAD-dependent [Listeria monocytogenes str. 1/2a F6854] gi|254900737|ref|ZP_05260661.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes J0161] gi|254913778|ref|ZP_05263790.1| DNA ligase [Listeria monocytogenes J2818] gi|254938165|ref|ZP_05269862.1| DNA ligase [Listeria monocytogenes F6900] gi|284802202|ref|YP_003414067.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 08-5578] gi|284995344|ref|YP_003417112.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 08-5923] gi|47015969|gb|EAL06895.1| DNA ligase, NAD-dependent [Listeria monocytogenes str. 1/2a F6854] gi|258610778|gb|EEW23386.1| DNA ligase [Listeria monocytogenes F6900] gi|284057764|gb|ADB68705.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 08-5578] gi|284060811|gb|ADB71750.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 08-5923] gi|293591794|gb|EFG00129.1| DNA ligase [Listeria monocytogenes J2818] Length = 671 Score = 45.5 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G + L F T+ + + ETL SI I +K+A I +F Sbjct: 508 GIRHVGAKAAKSLAVHFETMDNLKVADKETLTSINDIGEKMADSIVTYFANEE 560 >gi|326389597|ref|ZP_08211163.1| helicase, RecD/TraA family [Thermoanaerobacter ethanolicus JW 200] gi|325994312|gb|EGD52738.1| helicase, RecD/TraA family [Thermoanaerobacter ethanolicus JW 200] Length = 735 Score = 45.5 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 5/55 (9%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603 K S L I GIGP+ R +++ FG ++ +I + PE L I+G+S + +I Sbjct: 81 KFLSSGL--IPGIGPVTARKIVKKFGVDSLNIIETA-PERLKEIKGLSDEKIKRI 132 >gi|170079241|ref|YP_001735879.1| DNA ligase, NAD-dependent [Synechococcus sp. PCC 7002] gi|254781436|sp|B1XLV0|DNLJ_SYNP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|169886910|gb|ACB00624.1| DNA ligase, NAD-dependent [Synechococcus sp. PCC 7002] Length = 678 Score = 45.5 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 28/52 (53%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G + +L Q+F T++ + ++S L + GI ++IA + + F + + Sbjct: 524 VGKVNAEILAQNFPTLEQLQKASFAQLQGVYGIGEEIAQSVVDWFRVDANQQ 575 >gi|325284173|ref|YP_004256714.1| DNA protecting protein DprA [Deinococcus proteolyticus MRP] gi|324315982|gb|ADY27097.1| DNA protecting protein DprA [Deinococcus proteolyticus MRP] Length = 374 Score = 45.5 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 20/43 (46%) Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 G+G R L + FGT + PE L + G+ ++ A I Sbjct: 26 PGLGTRRIEALRRHFGTAQAALEVPPEALREVPGLDRRSAAAI 68 >gi|313905061|ref|ZP_07838431.1| helicase, RecD/TraA family [Eubacterium cellulosolvens 6] gi|313470131|gb|EFR65463.1| helicase, RecD/TraA family [Eubacterium cellulosolvens 6] Length = 751 Score = 45.5 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603 I G+G +++ FG T+ I PE LA ++GIS++ A +I Sbjct: 89 IKGVGAALAARIMKHFGEDTL-RIMEEEPERLAEVKGISERKAREI 133 >gi|289642343|ref|ZP_06474491.1| protein of unknown function DUF147 [Frankia symbiont of Datisca glomerata] gi|289507875|gb|EFD28826.1| protein of unknown function DUF147 [Frankia symbiont of Datisca glomerata] Length = 380 Score = 45.5 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 18/38 (47%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L+ F T++ + + + L ++EG+ + A I Sbjct: 330 RLVDHFSTLQKLLAAGVDDLQAVEGVGEARARAIREGL 367 >gi|255026038|ref|ZP_05298024.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL J2-003] Length = 671 Score = 45.5 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G + L F T+ + + ETL SI I +K+A I +F Sbjct: 508 GIRHVGAKAAKSLAVHFETMDNLKVADKETLTSINDIGEKMADSIVTYFANEE 560 >gi|16803798|ref|NP_465283.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes EGD-e] gi|224499523|ref|ZP_03667872.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes Finland 1988] gi|224503316|ref|ZP_03671623.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL R2-561] gi|81508669|sp|Q8Y6D0|DNLJ_LISMO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|16411212|emb|CAC99836.1| lmo1758 [Listeria monocytogenes EGD-e] Length = 671 Score = 45.5 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G + L F T+ + + ETL SI I +K+A I +F Sbjct: 508 GIRHVGAKAAKSLAVHFETMDNLKVADKETLTSINDIGEKMADSIVTYFANEE 560 >gi|89094416|ref|ZP_01167356.1| DNA ligase [Oceanospirillum sp. MED92] gi|89081308|gb|EAR60540.1| DNA ligase [Oceanospirillum sp. MED92] Length = 674 Score = 45.5 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 20/48 (41%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +G R L F + + +S E L + + +A I + F ++ Sbjct: 519 VGEATARSLAMHFLDLPALIEASEEALLEVPDVGPIVAKHIKSFFQQS 566 >gi|255099292|ref|ZP_05328269.1| putative DNA-binding protein [Clostridium difficile QCD-63q42] Length = 739 Score = 45.5 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I+GIG + ++ FG T+++I SPE L +EGI K +I + ++ Sbjct: 88 IHGIGEKMAKRIIDKFGVDTLEVIQN-SPEKLQEVEGIGSKKVKQIVKSYEED 139 >gi|157364326|ref|YP_001471093.1| helix-hairpin-helix repeat-containing competence protein ComEA [Thermotoga lettingae TMO] gi|157314930|gb|ABV34029.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermotoga lettingae TMO] Length = 180 Score = 45.5 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 14/53 (26%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACK 602 L EI GIGP + R +L F ++ E L ++ GI + A K Sbjct: 59 ELLEIPGIGPAKARSILDYRESNGPFQSI--------EDLTNVSGIGRATAEK 103 Score = 37.0 bits (84), Expect = 9.2, Method: Composition-based stats. Identities = 8/26 (30%), Positives = 13/26 (50%) Query: 581 ISRSSPETLASIEGISKKIACKIYNH 606 I+ ++ E L I GI A I ++ Sbjct: 52 INSATYEELLEIPGIGPAKARSILDY 77 >gi|126697704|ref|YP_001086601.1| putative DNA-binding protein [Clostridium difficile 630] gi|254973791|ref|ZP_05270263.1| putative DNA-binding protein [Clostridium difficile QCD-66c26] gi|255091180|ref|ZP_05320658.1| putative DNA-binding protein [Clostridium difficile CIP 107932] gi|255312835|ref|ZP_05354418.1| putative DNA-binding protein [Clostridium difficile QCD-76w55] gi|255515594|ref|ZP_05383270.1| putative DNA-binding protein [Clostridium difficile QCD-97b34] gi|255648688|ref|ZP_05395590.1| putative DNA-binding protein [Clostridium difficile QCD-37x79] gi|260681910|ref|YP_003213195.1| putative DNA-binding protein [Clostridium difficile CD196] gi|260685508|ref|YP_003216641.1| putative DNA-binding protein [Clostridium difficile R20291] gi|115249141|emb|CAJ66952.1| putative DNA helicase, RecD/TraA type [Clostridium difficile] gi|260208073|emb|CBA60304.1| putative DNA-binding protein [Clostridium difficile CD196] gi|260211524|emb|CBE01690.1| putative DNA-binding protein [Clostridium difficile R20291] Length = 739 Score = 45.5 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I+GIG + ++ FG T+++I SPE L +EGI K +I + ++ Sbjct: 88 IHGIGEKMAKRIIDKFGVDTLEVIQN-SPEKLQEVEGIGSKKVKQIVKSYEED 139 >gi|28212198|ref|NP_783142.1| DNA integrity scanning protein DisA [Clostridium tetani E88] gi|75541601|sp|Q890L8|DISA_CLOTE RecName: Full=DNA integrity scanning protein disA gi|28204642|gb|AAO37079.1| putative DNA-binding protein [Clostridium tetani E88] Length = 360 Score = 45.5 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 19/37 (51%) Query: 573 QSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 ++F +K + +S E L +EGI + A I N + Sbjct: 310 KNFKELKAVMEASYEQLDKVEGIGEARAKAIKNGLRR 346 >gi|119358057|ref|YP_912701.1| helix-hairpin-helix DNA-binding motif-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119355406|gb|ABL66277.1| helix-hairpin-helix motif protein [Chlorobium phaeobacteroides DSM 266] Length = 175 Score = 45.5 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 6/66 (9%) Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 I+ + KA+ L +I G+GP+ + L+ F K S+ E L ++GI KK Sbjct: 113 ISFN-----KASEKQLQKIPGVGPVMAKRLVA-FRASKGGRVSNVEQLLEVKGIGKKKLE 166 Query: 602 KIYNHF 607 + H Sbjct: 167 VLRKHL 172 >gi|222481028|ref|YP_002567265.1| DNA repair and recombination protein RadA [Halorubrum lacusprofundi ATCC 49239] gi|222453930|gb|ACM58195.1| DNA repair and recombination protein RadA [Halorubrum lacusprofundi ATCC 49239] Length = 343 Score = 45.5 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606 L+++ G+GP L+++ F + + I+ +SP +++ I + A I N Sbjct: 5 ELEDLPGVGPATADKLVENGFESYQSIAVASPGEMSNTADIGESSASDIINA 56 >gi|48478452|ref|YP_024158.1| ski2-like helicase [Picrophilus torridus DSM 9790] gi|48431100|gb|AAT43965.1| helicase involved in UV-protection [Picrophilus torridus DSM 9790] Length = 674 Score = 45.5 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L +I +G +R R L + F TV I+RSSPE + I G SK +A +I N Sbjct: 612 LIKIPKVGRVRARRLYDNGFKTVDDIARSSPENIEKIFGFSKNLAAEIVN 661 >gi|255305078|ref|ZP_05349250.1| putative DNA-binding protein [Clostridium difficile ATCC 43255] Length = 739 Score = 45.5 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I+GIG + ++ FG T+++I SPE L +EGI K +I + ++ Sbjct: 88 IHGIGEKMAKRIIDKFGVDTLEVIQN-SPEKLQEVEGIGSKKVKQIVKSYEED 139 >gi|124504849|ref|XP_001351167.1| N2227-like protein, putative [Plasmodium falciparum 3D7] gi|3649764|emb|CAB11113.1| N2227-like protein, putative [Plasmodium falciparum 3D7] Length = 955 Score = 45.5 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 17/253 (6%), Positives = 53/253 (20%), Gaps = 2/253 (0%) Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186 + ++ + ++ C + H C C C + + Sbjct: 354 NKNSCDNHCDNHCDNHSDNHCDNHSDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNH 413 Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFS 246 N + N ++ + +H NH D+ + Sbjct: 414 CDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHSDNHCDNHCDNHCDNHCDNHCDNHCDNH 473 Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLS 306 ++ + C C H + + + + D C + Sbjct: 474 CDNHSDNHCDNHCDNHSDNHCDNHCDNHSDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNH 533 Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKR--KIIEQALINAHRSHTQKLSTEISHQM 364 + + + + + +N + Sbjct: 534 CDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNNKMNRTHLMNSNTKGDDQTCK 593 Query: 365 ILKDFTKKFALPH 377 +++ + + Sbjct: 594 NTNEYSDTSSNHY 606 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 26/258 (10%), Positives = 46/258 (17%), Gaps = 9/258 (3%) Query: 138 LQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHN 197 + C + H C C C + + N Sbjct: 353 CNKNSCDNHCDNHCDNHSDNHCDNHSDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDN 412 Query: 198 LKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNLA--- 254 + N D H D + ++ N D H N Sbjct: 413 HCDNHCDN--HCDNHCD-NHCDNHCDNHCDNHCDNHSDNHCDNHCDNHCDNHCDNHCDNH 469 Query: 255 CIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSL 314 C C H + + + S + D C + + + Sbjct: 470 CDNHCDNHSDNHCDNHCDNHSDNHCDNHCDNHSDNHCDNHCDNHCDNHCDNHCDNHCDNH 529 Query: 315 LEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFA 374 + + + N +H + Sbjct: 530 CDNHCDNHCDNHCDNHCDNHCD--NHCDNHCDNHCDNHCDNHCDNNKMNRTHLMNSNTKG 587 Query: 375 LPHIPKRIEIY-DNSHIM 391 K Y D S Sbjct: 588 DDQTCKNTNEYSDTSSNH 605 Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 19/267 (7%), Positives = 48/267 (17%), Gaps = 17/267 (6%) Query: 132 EKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFL 191 + ++S ++ ++ D+ + C C + + Sbjct: 342 DDNMDSSDKSSCNKNSCDNHCDNH---CDNHSDNHCDNHSDNHCDNHCDNHCDNHCDNHC 398 Query: 192 SGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNK 251 N + N H D + ++ N D H+ Sbjct: 399 DNHCDNHCDNHCDN-----------HCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHSD 447 Query: 252 NLACIQT-CFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAE 310 N + ++ ++ + + Sbjct: 448 NHCDNHCDNHCDNHCDNHCDNHCDNHCDNHSDNHCDNHCDNHSDNHCDNHCDNHSDNHCD 507 Query: 311 ETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFT 370 + N +H + +H D Sbjct: 508 NHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNH--CDNHCDNHCDNHCDNH 565 Query: 371 KKFALPHIPKRIEIYDNSHIMGCSAVG 397 + NS+ G Sbjct: 566 CDNHCDNNKMNRTHLMNSNTKGDDQTC 592 Score = 39.7 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 25/285 (8%), Positives = 56/285 (19%), Gaps = 4/285 (1%) Query: 131 VEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKF 190 + ++ C + H C C C + + Sbjct: 386 CDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNH 445 Query: 191 LSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHN 250 N + N D H D + + ++ N D H+ Sbjct: 446 SDNHCDNHCDNHCDN--HCDNHCD-NHCDNHCDNHSDNHCDNHCDNHSDNHCDNHCDNHS 502 Query: 251 KNLACIQT-CFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEA 309 N + + ++ + Sbjct: 503 DNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHC 562 Query: 310 EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDF 369 + K + + K ++ + +H E ++ ++ Sbjct: 563 DNHCDNHCDNNKMNRTHLMNSNTKGDDQTCKNTNEYSDTSSNHYCNNIEEDTYNVVNPGV 622 Query: 370 TKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414 K I+ Y N + EN N + Sbjct: 623 DLDVHNIIDSKNIKDYHNDIKENMCNNNKTLHADENMPNDNICAR 667 >gi|308069576|ref|YP_003871181.1| hypothetical protein PPE_02816 [Paenibacillus polymyxa E681] gi|305858855|gb|ADM70643.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 420 Score = 45.5 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMIS-RSSPETLASIEGISKKIACKI 603 PL+ I G+G + LL +FGT I + E LA++ G K +A +I Sbjct: 350 PLEFIPGLGKAKLNQLLAAFGTEMNILHEVTQEELAAVVG--KVLAEQI 396 >gi|226357440|ref|YP_002787179.1| NAD-dependent DNA ligase [Deinococcus deserti VCD115] gi|254778147|sp|C1D1Y6|DNLJ1_DEIDV RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 1 gi|226319430|gb|ACO47425.1| putative NAD-dependent DNA ligase [Deinococcus deserti VCD115] Length = 686 Score = 45.5 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 22/46 (47%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 +G + + + +++ I ++S + LA I + +++A I Sbjct: 532 VGEGTATRIARVYRSLEDIRQASVDDLARIPDVGRQVAEGIVQGLR 577 >gi|212721946|ref|NP_001131279.1| hypothetical protein LOC100192592 [Zea mays] gi|194691068|gb|ACF79618.1| unknown [Zea mays] Length = 397 Score = 45.5 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 20/35 (57%) Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 FG++ I S + LA GI ++ ++Y+ FH+ Sbjct: 266 FGSLSQIMNGSMDELARCPGIGERKVRRLYDTFHE 300 >gi|187251632|ref|YP_001876114.1| DNA ligase, NAD-dependent [Elusimicrobium minutum Pei191] gi|254781329|sp|B2KE31|DNLJ_ELUMP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|186971792|gb|ACC98777.1| DNA ligase, NAD-dependent [Elusimicrobium minutum Pei191] Length = 656 Score = 45.5 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 3/60 (5%) Query: 550 KKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 KK + S + I +G +L F ++ + +S E I I + +Y+ Sbjct: 494 KKRSLSRVLYAFGIRHVGQKTGEILANHFEDIENMLAASLEDFQKINEIGPVVGQSVYDF 553 >gi|84497240|ref|ZP_00996062.1| putative DNA-binding protein [Janibacter sp. HTCC2649] gi|84382128|gb|EAP98010.1| putative DNA-binding protein [Janibacter sp. HTCC2649] Length = 360 Score = 45.5 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 19/38 (50%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ FG+++ + + + L +EG+ + A + Sbjct: 310 RLVEHFGSLQKLLAAGVDDLMGVEGVGEGRARLVREGL 347 >gi|303244732|ref|ZP_07331062.1| DNA repair and recombination protein RadA [Methanothermococcus okinawensis IH1] gi|302484866|gb|EFL47800.1| DNA repair and recombination protein RadA [Methanothermococcus okinawensis IH1] Length = 322 Score = 45.5 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACK 602 L ++ G+GP L+++ + I+ ++ L IEGIS+K A K Sbjct: 5 LTDLPGVGPSTAEKLIEAGYIDFMKIATATIGELTDIEGISEKAAAK 51 >gi|288818476|ref|YP_003432824.1| DNA processing protein [Hydrogenobacter thermophilus TK-6] gi|288787876|dbj|BAI69623.1| DNA processing protein [Hydrogenobacter thermophilus TK-6] gi|308752066|gb|ADO45549.1| DNA protecting protein DprA [Hydrogenobacter thermophilus TK-6] Length = 337 Score = 45.5 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 L + G+G + L + +I +S E L ++ I ++ A ++ Sbjct: 10 LKAVKGLGEKSIKKLYAVYKDPSLILEASVEELKAL--IGREKAERLKR 56 >gi|148982028|ref|ZP_01816589.1| NAD-dependent DNA ligase LigA [Vibrionales bacterium SWAT-3] gi|145960667|gb|EDK26012.1| NAD-dependent DNA ligase LigA [Vibrionales bacterium SWAT-3] Length = 670 Score = 45.5 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 22/52 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L Q F T++++ ++ E L + I +A I F + + Sbjct: 521 VGEATAMNLAQHFKTLELVQAATHEQLVEVSDIGDIVASHITAFFSQEKNRA 572 >gi|110802645|ref|YP_699691.1| DNA integrity scanning protein DisA [Clostridium perfringens SM101] gi|122956487|sp|Q0SQB6|DISA_CLOPS RecName: Full=DNA integrity scanning protein disA gi|110683146|gb|ABG86516.1| helix-hairpin-helix domain protein [Clostridium perfringens SM101] Length = 354 Score = 45.5 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 19/42 (45%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L+ FG +K I + E L +EGI + A I N + Sbjct: 302 IENLVGHFGKLKYILEAGNEELDQVEGIGEARARAIKNGLRR 343 >gi|18311414|ref|NP_563348.1| DNA integrity scanning protein DisA [Clostridium perfringens str. 13] gi|168206826|ref|ZP_02632831.1| helix-hairpin-helix domain protein [Clostridium perfringens E str. JGS1987] gi|168211246|ref|ZP_02636871.1| helix-hairpin-helix domain protein [Clostridium perfringens B str. ATCC 3626] gi|168214721|ref|ZP_02640346.1| helix-hairpin-helix domain protein [Clostridium perfringens CPE str. F4969] gi|168217925|ref|ZP_02643550.1| helix-hairpin-helix domain protein [Clostridium perfringens NCTC 8239] gi|169344124|ref|ZP_02865107.1| helix-hairpin-helix domain protein [Clostridium perfringens C str. JGS1495] gi|182626982|ref|ZP_02954712.1| helix-hairpin-helix domain protein [Clostridium perfringens D str. JGS1721] gi|81766481|sp|Q8XHQ0|DISA_CLOPE RecName: Full=DNA integrity scanning protein disA gi|18146098|dbj|BAB82138.1| conserved hypothetical protein [Clostridium perfringens str. 13] gi|169297735|gb|EDS79834.1| helix-hairpin-helix domain protein [Clostridium perfringens C str. JGS1495] gi|170661719|gb|EDT14402.1| helix-hairpin-helix domain protein [Clostridium perfringens E str. JGS1987] gi|170710789|gb|EDT22971.1| helix-hairpin-helix domain protein [Clostridium perfringens B str. ATCC 3626] gi|170713822|gb|EDT26004.1| helix-hairpin-helix domain protein [Clostridium perfringens CPE str. F4969] gi|177907652|gb|EDT70276.1| helix-hairpin-helix domain protein [Clostridium perfringens D str. JGS1721] gi|182380023|gb|EDT77502.1| helix-hairpin-helix domain protein [Clostridium perfringens NCTC 8239] Length = 354 Score = 45.5 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 19/42 (45%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L+ FG +K I + E L +EGI + A I N + Sbjct: 302 IENLVGHFGKLKYILEAGNEELDQVEGIGEARARAIKNGLRR 343 >gi|295399494|ref|ZP_06809476.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93] gi|294978960|gb|EFG54556.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93] Length = 878 Score = 45.5 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 + GIG LL+ FG+++ I S E ++ Sbjct: 193 GVPGIGEKTALKLLKEFGSIENILD-SIEQIS 223 >gi|269986983|gb|EEZ93259.1| SKI2-family helicase [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 143 Score = 45.5 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 5/64 (7%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFH 608 KA PL + IG +R R L + G ++K + + E L+ + + +A K+Y++ H Sbjct: 79 KAELIPLVSVPEIGRVRARKLYSA-GIISLKSLKEAGLERLS--PLLGRGVAQKVYSYLH 135 Query: 609 KNTS 612 KN + Sbjct: 136 KNEN 139 >gi|225849186|ref|YP_002729350.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium azorense Az-Fu1] gi|254781434|sp|C1DW63|DNLJ_SULAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|225644062|gb|ACN99112.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium azorense Az-Fu1] Length = 701 Score = 45.5 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 23/50 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + + L + ++ + + L + I K+A +IYN FH + Sbjct: 552 VGEVTAKTLASAVNCLEDLKNFTITDLMKLPDIGDKVATEIYNFFHNEQN 601 >gi|237713195|ref|ZP_04543676.1| DNA ligase [Bacteroides sp. D1] gi|262406666|ref|ZP_06083215.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_22] gi|294643460|ref|ZP_06721274.1| DNA ligase (NAD(+)) [Bacteroides ovatus SD CC 2a] gi|294808131|ref|ZP_06766900.1| DNA ligase (NAD(+)) [Bacteroides xylanisolvens SD CC 1b] gi|229446662|gb|EEO52453.1| DNA ligase [Bacteroides sp. D1] gi|262355369|gb|EEZ04460.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_22] gi|292641208|gb|EFF59412.1| DNA ligase (NAD(+)) [Bacteroides ovatus SD CC 2a] gi|294444674|gb|EFG13372.1| DNA ligase (NAD(+)) [Bacteroides xylanisolvens SD CC 1b] Length = 666 Score = 45.5 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 26/50 (52%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + + +SF + + ++ E L SI+ I +KIA I +F ++ Sbjct: 516 VGETVAKKIAKSFENIDDLQQADLEKLVSIDEIGEKIAQSILAYFANESN 565 >gi|152992587|ref|YP_001358308.1| family X DNA polymerase IV [Sulfurovum sp. NBC37-1] gi|151424448|dbj|BAF71951.1| DNA polymerase IV, family X [Sulfurovum sp. NBC37-1] Length = 571 Score = 45.5 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 5/54 (9%) Query: 557 LD--EINGIGPLRKRLLLQSF--GTVKMISRSSPE-TLASIEGISKKIACKIYN 605 LD +I GIGP R ++L Q G+++ + +++ ++ ++G S+K+ KI Sbjct: 94 LDILKIEGIGPKRAKILYQELNIGSLEALRKAAEAHKISQLKGFSEKMEQKILK 147 >gi|149024919|ref|ZP_01836320.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP23-BS72] gi|303259779|ref|ZP_07345754.1| DNA ligase [Streptococcus pneumoniae SP-BS293] gi|303262954|ref|ZP_07348889.1| DNA ligase [Streptococcus pneumoniae SP14-BS292] gi|303264916|ref|ZP_07350832.1| DNA ligase [Streptococcus pneumoniae BS397] gi|303266897|ref|ZP_07352775.1| DNA ligase [Streptococcus pneumoniae BS457] gi|303268933|ref|ZP_07354718.1| DNA ligase [Streptococcus pneumoniae BS458] gi|147929542|gb|EDK80536.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP23-BS72] gi|301794230|emb|CBW36650.1| DNA ligase [Streptococcus pneumoniae INV104] gi|302635931|gb|EFL66431.1| DNA ligase [Streptococcus pneumoniae SP14-BS292] gi|302638984|gb|EFL69444.1| DNA ligase [Streptococcus pneumoniae SP-BS293] gi|302641551|gb|EFL71913.1| DNA ligase [Streptococcus pneumoniae BS458] gi|302643595|gb|EFL73864.1| DNA ligase [Streptococcus pneumoniae BS457] gi|302645604|gb|EFL75835.1| DNA ligase [Streptococcus pneumoniae BS397] gi|332202976|gb|EGJ17044.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA47901] Length = 652 Score = 45.5 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 29/55 (52%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G +LLLQ F +++ +S++ E +ASIE + IA + +F S Sbjct: 502 GIRHVGSKASQLLLQYFHSIENLSQADSEEVASIESLGGVIAKSLQTYFATEGSE 556 >gi|148994566|ref|ZP_01823725.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP9-BS68] gi|168488962|ref|ZP_02713161.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP195] gi|147927160|gb|EDK78197.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP9-BS68] gi|183572496|gb|EDT93024.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP195] gi|332073479|gb|EGI83958.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA17570] Length = 652 Score = 45.5 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 29/55 (52%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G +LLLQ F +++ +S++ E +ASIE + IA + +F S Sbjct: 502 GIRHVGSKASQLLLQYFHSIENLSQADSEEVASIESLGGVIAKSLQTYFATEGSE 556 >gi|149003762|ref|ZP_01828594.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP14-BS69] gi|237650785|ref|ZP_04525037.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae CCRI 1974] gi|237822373|ref|ZP_04598218.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae CCRI 1974M2] gi|147758208|gb|EDK65210.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP14-BS69] Length = 652 Score = 45.5 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 29/55 (52%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G +LLLQ F +++ +S++ E +ASIE + IA + +F S Sbjct: 502 GIRHVGSKASQLLLQYFHSIENLSQADSEEVASIESLGGVIAKSLQTYFATEGSE 556 >gi|16800936|ref|NP_471204.1| NAD-dependent DNA ligase LigA [Listeria innocua Clip11262] gi|81526387|sp|Q92AQ0|DNLJ_LISIN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|16414371|emb|CAC97100.1| lin1870 [Listeria innocua Clip11262] Length = 671 Score = 45.5 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G + L F T+ + + ETL SI I +K+A I +F Sbjct: 508 GIRHVGAKAAKSLAVHFETMDNLKIADKETLTSINDIGEKMADSIVTYFANEE 560 >gi|119714733|ref|YP_921698.1| DNA integrity scanning protein DisA [Nocardioides sp. JS614] gi|119535394|gb|ABL80011.1| protein of unknown function DUF147 [Nocardioides sp. JS614] Length = 360 Score = 45.5 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 21/45 (46%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 L+ FGT++ + + + L ++EG+ + A + + T Sbjct: 310 RLVDHFGTLQKLLSAGVDDLQAVEGVGELRARSVREGLSRLAEST 354 >gi|330470472|ref|YP_004408215.1| DNA integrity scanning protein DisA [Verrucosispora maris AB-18-032] gi|328813443|gb|AEB47615.1| DNA integrity scanning protein DisA [Verrucosispora maris AB-18-032] Length = 392 Score = 45.5 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 19/38 (50%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L+ FG+++ + ++ E L ++EG+ A + Sbjct: 342 RLVVHFGSLQRLLGATVEDLQAVEGVGDARARGVREGL 379 >gi|325297787|ref|YP_004257704.1| DNA ligase [Bacteroides salanitronis DSM 18170] gi|324317340|gb|ADY35231.1| DNA ligase [Bacteroides salanitronis DSM 18170] Length = 667 Score = 45.5 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 27/50 (54%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + + ++F +++ ++ ++ + L ++ I +KIA I +F + Sbjct: 515 VGETVAKKVARAFRSIEALATATLDDLIHVDEIGEKIAGSILRYFADEKN 564 >gi|302870287|ref|YP_003838924.1| hypothetical protein Micau_5844 [Micromonospora aurantiaca ATCC 27029] gi|315503437|ref|YP_004082324.1| hypothetical protein ML5_2651 [Micromonospora sp. L5] gi|302573146|gb|ADL49348.1| protein of unknown function DUF147 [Micromonospora aurantiaca ATCC 27029] gi|315410056|gb|ADU08173.1| protein of unknown function DUF147 [Micromonospora sp. L5] Length = 396 Score = 45.5 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 19/38 (50%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L+ FG+++ + ++ E L ++EG+ A + Sbjct: 346 RLVVHFGSLQRLLGATVEDLQAVEGVGDARARGVREGL 383 >gi|323490482|ref|ZP_08095689.1| hypothetical protein GPDM_14016 [Planococcus donghaensis MPA1U2] gi|323395886|gb|EGA88725.1| hypothetical protein GPDM_14016 [Planococcus donghaensis MPA1U2] Length = 569 Score = 45.5 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 3/51 (5%) Query: 562 GIGPLRKRLLLQSFG--TVKMISRSSP-ETLASIEGISKKIACKIYNHFHK 609 G+G + L + G +++ + + E + + G K KI ++ Sbjct: 95 GLGGKKIAKLYKELGIGSMEALKAACLNEEIQKLPGFGPKSEEKILKELNE 145 >gi|300709896|ref|YP_003735710.1| hypothetical protein HacjB3_02625 [Halalkalicoccus jeotgali B3] gi|299123579|gb|ADJ13918.1| hypothetical protein HacjB3_02625 [Halalkalicoccus jeotgali B3] Length = 171 Score = 45.5 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606 +EI GIGP L + F TV I+ +S + L +I GI KI Sbjct: 115 EFEEIPGIGPRTASNLRRQGFVTVTSINTASDDVLRAIPGIGPDALAKIRAF 166 >gi|297621995|ref|YP_003710132.1| Holliday junction ATP-dependent DNA helicase ruvA [Waddlia chondrophila WSU 86-1044] gi|297377296|gb|ADI39126.1| Holliday junction ATP-dependent DNA helicase ruvA [Waddlia chondrophila WSU 86-1044] Length = 202 Score = 45.5 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 5/57 (8%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKI 603 + + L ++GIGP L+ +V+ + + ++ + GI KK A ++ Sbjct: 69 RDLFEELTTVSGIGPKIALALIGHL-SVEEMHAAIGNQEVAMISKVPGIGKKTAQRL 124 >gi|152991030|ref|YP_001356752.1| family X DNA polymerase IV [Nitratiruptor sp. SB155-2] gi|151422891|dbj|BAF70395.1| DNA polymerase IV, family X [Nitratiruptor sp. SB155-2] Length = 571 Score = 45.5 bits (106), Expect = 0.031, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 3/50 (6%) Query: 559 EINGIGPLRKRLLLQ--SFGTVKMISRSSPE-TLASIEGISKKIACKIYN 605 I G+GP R + L + +++ + R++ + + G + KI Sbjct: 98 SIEGLGPKRIKTLYEKLHIQSMEDLRRAAESGEIEKLPGFGPTLVQKILK 147 >gi|325288902|ref|YP_004265083.1| DNA ligase [Syntrophobotulus glycolicus DSM 8271] gi|324964303|gb|ADY55082.1| DNA ligase [Syntrophobotulus glycolicus DSM 8271] Length = 671 Score = 45.1 bits (105), Expect = 0.031, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 24/54 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G R+L Q +G+++ + + + L + I +A I + F + Sbjct: 518 GIRNVGIKAGRVLAQKYGSMEKLQEAGEDELCEVPDIGGIMAASITSFFRDRAN 571 >gi|319939188|ref|ZP_08013551.1| DNA ligase [Streptococcus anginosus 1_2_62CV] gi|319811584|gb|EFW07860.1| DNA ligase [Streptococcus anginosus 1_2_62CV] Length = 652 Score = 45.1 bits (105), Expect = 0.031, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 31/55 (56%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G ++LL+ F ++ ++++ E +A+++ + IA + ++F + +H Sbjct: 502 GIRHVGSKASQILLEHFHDLEQLAKAKREEIAALDSLGMVIAESLSSYFAQEGTH 556 >gi|294140434|ref|YP_003556412.1| DNA ligase, NAD-dependent [Shewanella violacea DSS12] gi|293326903|dbj|BAJ01634.1| DNA ligase, NAD-dependent [Shewanella violacea DSS12] Length = 683 Score = 45.1 bits (105), Expect = 0.031, Method: Composition-based stats. Identities = 9/64 (14%), Positives = 24/64 (37%), Gaps = 3/64 (4%) Query: 550 KKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 K+ +S I +G L F ++ + ++ E ++ + +A + + Sbjct: 517 KQTTFSRFLYALGIREVGEATAANLASYFKSLDKLKAANAEEFIKVDDVGIIVAQHLTHF 576 Query: 607 FHKN 610 F + Sbjct: 577 FAQE 580 >gi|299145622|ref|ZP_07038690.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_23] gi|298516113|gb|EFI39994.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_23] Length = 666 Score = 45.1 bits (105), Expect = 0.031, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 26/50 (52%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + + +SF + + ++ E L SI+ I +KIA I +F ++ Sbjct: 516 VGETVAKKIAKSFENIDDLQQADLEKLVSIDEIGEKIAQSILAYFANESN 565 >gi|289423629|ref|ZP_06425429.1| helicase, RecD/TraA family [Peptostreptococcus anaerobius 653-L] gi|289155997|gb|EFD04662.1| helicase, RecD/TraA family [Peptostreptococcus anaerobius 653-L] Length = 740 Score = 45.1 bits (105), Expect = 0.031, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 16/83 (19%) Query: 543 TTHRKRRKKA-----------AYSPLDE--INGIGPLRKRLLLQSFG--TVKMISRSSPE 587 T R+ R + S L I G+G + ++ FG ++++I SPE Sbjct: 57 TYGRQLRVNSYQLVIPTTVSGILSFLSSGVITGVGQKMAKRIVDKFGVRSLEVIQN-SPE 115 Query: 588 TLASIEGISKKIACKIYNHFHKN 610 L IEGI K + + +N Sbjct: 116 DLLKIEGIGPKKLKPLVESYREN 138 >gi|237717569|ref|ZP_04548050.1| DNA ligase [Bacteroides sp. 2_2_4] gi|293371586|ref|ZP_06618001.1| DNA ligase (NAD(+)) [Bacteroides ovatus SD CMC 3f] gi|229453155|gb|EEO58946.1| DNA ligase [Bacteroides sp. 2_2_4] gi|292633449|gb|EFF52017.1| DNA ligase (NAD(+)) [Bacteroides ovatus SD CMC 3f] Length = 666 Score = 45.1 bits (105), Expect = 0.031, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 26/50 (52%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + + +SF + + ++ E L SI+ I +KIA I +F ++ Sbjct: 516 VGETVAKKIAKSFENIDDLQQADLEKLVSIDEIGEKIAQSILAYFANESN 565 >gi|160884627|ref|ZP_02065630.1| hypothetical protein BACOVA_02616 [Bacteroides ovatus ATCC 8483] gi|156110366|gb|EDO12111.1| hypothetical protein BACOVA_02616 [Bacteroides ovatus ATCC 8483] Length = 666 Score = 45.1 bits (105), Expect = 0.031, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 26/50 (52%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + + +SF + + ++ E L SI+ I +KIA I +F ++ Sbjct: 516 VGETVAKKIAKSFENIDDLQQADLEKLVSIDEIGEKIAQSILAYFANESN 565 >gi|332977432|gb|EGK14208.1| YqxK like protein [Desmospora sp. 8437] Length = 402 Score = 45.1 bits (105), Expect = 0.031, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%) Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKI 603 PL+ I +GP + LL FGT ++++ R+S +A + G +A I Sbjct: 320 PLEFIPKLGPKTLQKLLSRFGTEMEILHRASLADIAELAG--ASVATHI 366 >gi|326575817|gb|EGE25740.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis CO72] Length = 204 Score = 45.1 bits (105), Expect = 0.031, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 5/61 (8%) Query: 548 RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603 R + + L +ING+G +L + +V I + L + GI KK A +I Sbjct: 66 RHDRDIFRKLIKINGVGAKMALAMLSTL-SVAEIKHAIETDYDAALVRVPGIGKKTAQRI 124 Query: 604 Y 604 Sbjct: 125 L 125 >gi|326560238|gb|EGE10626.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis 7169] gi|326566444|gb|EGE16594.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis BC1] Length = 204 Score = 45.1 bits (105), Expect = 0.031, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 5/61 (8%) Query: 548 RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603 R + + L +ING+G +L + +V I + L + GI KK A +I Sbjct: 66 RHDRDIFRKLIKINGVGAKMALAMLSTL-SVAEIKHAIETDYDAALVRVPGIGKKTAQRI 124 Query: 604 Y 604 Sbjct: 125 L 125 >gi|315644109|ref|ZP_07897279.1| Excinuclease ABC C subunit domain protein [Paenibacillus vortex V453] gi|315280484|gb|EFU43773.1| Excinuclease ABC C subunit domain protein [Paenibacillus vortex V453] Length = 118 Score = 45.1 bits (105), Expect = 0.031, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70 G++ + +L+VGKA L+ RIK + + + +++ I V V Sbjct: 39 GIFMFYNSKEELLFVGKARKLRPRIKKHFEDSVSPIKDHR--NEVTRIEVCVIEDAVHRE 96 Query: 71 LLEANMIKRLKPRFNI 86 + E +I LK +N+ Sbjct: 97 IYETYIINELKAEYNV 112 >gi|298484007|ref|ZP_07002176.1| DNA ligase, NAD-dependent [Bacteroides sp. D22] gi|298269788|gb|EFI11380.1| DNA ligase, NAD-dependent [Bacteroides sp. D22] Length = 666 Score = 45.1 bits (105), Expect = 0.031, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 26/50 (52%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + + +SF + + ++ E L SI+ I +KIA I +F ++ Sbjct: 516 VGETVAKKIAKSFENIDDLQQADLEKLVSIDEIGEKIAQSILAYFANESN 565 >gi|295084199|emb|CBK65722.1| DNA ligase, NAD-dependent [Bacteroides xylanisolvens XB1A] Length = 666 Score = 45.1 bits (105), Expect = 0.031, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 26/50 (52%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + + +SF + + ++ E L SI+ I +KIA I +F ++ Sbjct: 516 VGETVAKKIAKSFENIDDLQQADLEKLVSIDEIGEKIAQSILAYFANESN 565 >gi|153806306|ref|ZP_01958974.1| hypothetical protein BACCAC_00565 [Bacteroides caccae ATCC 43185] gi|149130983|gb|EDM22189.1| hypothetical protein BACCAC_00565 [Bacteroides caccae ATCC 43185] Length = 666 Score = 45.1 bits (105), Expect = 0.031, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 28/50 (56%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + + +SF + + ++ ETL SI+ I +KIA I ++F ++ Sbjct: 516 VGETVAKKIAKSFENIDELQQADLETLISIDEIGEKIAQSILSYFANESN 565 >gi|297183498|gb|ADI19628.1| NAD-dependent DNA ligase (contains brct domain type II) [uncultured delta proteobacterium HF0770_45N15] Length = 655 Score = 45.1 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 24/49 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G RLL + FGT++ + E L +I+ I IA + + F Sbjct: 503 GIPNVGEKTARLLARRFGTLQTLQTVQHEQLLAIDEIGPVIANSVASFF 551 >gi|291530928|emb|CBK96513.1| DNA repair proteins [Eubacterium siraeum 70/3] Length = 228 Score = 45.1 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 17/34 (50%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 L+ FGT+ + +S L +EG+ + A I Sbjct: 46 RLIDRFGTLSGVFSASENELCEVEGVGRSTAQMI 79 >gi|312109948|ref|YP_003988264.1| DNA polymerase I [Geobacillus sp. Y4.1MC1] gi|311215049|gb|ADP73653.1| DNA polymerase I [Geobacillus sp. Y4.1MC1] Length = 878 Score = 45.1 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 + GIG LL+ FG+++ I S E ++ Sbjct: 193 GVPGIGEKTALKLLKEFGSIENILD-SIEQIS 223 >gi|195657333|gb|ACG48134.1| mating-type switching protein swi10 [Zea mays] Length = 396 Score = 45.1 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 20/35 (57%) Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 FG++ I S + LA GI ++ ++Y+ FH+ Sbjct: 265 FGSLSQIMNGSMDELARCPGIGERKVRRLYDTFHE 299 >gi|167750401|ref|ZP_02422528.1| hypothetical protein EUBSIR_01375 [Eubacterium siraeum DSM 15702] gi|167656552|gb|EDS00682.1| hypothetical protein EUBSIR_01375 [Eubacterium siraeum DSM 15702] Length = 228 Score = 45.1 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 17/34 (50%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 L+ FGT+ + +S L +EG+ + A I Sbjct: 46 RLIDRFGTLSGVFSASENELCEVEGVGRSTAQMI 79 >gi|15615715|ref|NP_244019.1| DNA polymerase I [Bacillus halodurans C-125] gi|10175775|dbj|BAB06872.1| DNA polymerase I [Bacillus halodurans C-125] Length = 876 Score = 45.1 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 6/48 (12%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + GIG LL+ +G+V+ + S + ++ KK+ ++ H Sbjct: 191 GVPGIGEKTALKLLKEYGSVEKVLE-SIDEIS-----GKKMKERLEEH 232 >gi|237742800|ref|ZP_04573281.1| NAD-dependent DNA ligase [Fusobacterium sp. 4_1_13] gi|229430448|gb|EEO40660.1| NAD-dependent DNA ligase [Fusobacterium sp. 4_1_13] Length = 696 Score = 45.1 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 25/51 (49%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 IG + + L ++ + + S E L SI+GI KK A +I F K + Sbjct: 541 IGKVASKALAKASKNIDKLMTMSFEELTSIDGIGKKAANEIIAFFTKEKNQ 591 >gi|158338142|ref|YP_001519318.1| RecD/TraA family helicase [Acaryochloris marina MBIC11017] gi|158308383|gb|ABW30000.1| helicase, RecD/TraA family [Acaryochloris marina MBIC11017] Length = 743 Score = 45.1 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 5/55 (9%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603 K S L I G+GP+ + ++ FG T+ +I E L + GI+KK I Sbjct: 95 KYLGSGL--IKGVGPVTAKRIVAHFGLETLDIIEN-QIERLVEVPGIAKKRVKLI 146 >gi|326796428|ref|YP_004314248.1| DNA ligase [Marinomonas mediterranea MMB-1] gi|326547192|gb|ADZ92412.1| DNA ligase [Marinomonas mediterranea MMB-1] Length = 680 Score = 45.1 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 6/50 (12%), Positives = 21/50 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + L + + + + ++ E+L + + +A + F + + Sbjct: 526 VGEATAKALTKHYKALDALIQADQESLIQVSDVGPIVAQHVQRFFEQEQN 575 >gi|326391733|ref|ZP_08213256.1| hypothetical protein TheetDRAFT_2497 [Thermoanaerobacter ethanolicus JW 200] gi|325992233|gb|EGD50702.1| hypothetical protein TheetDRAFT_2497 [Thermoanaerobacter ethanolicus JW 200] Length = 390 Score = 45.1 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%) Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKI 599 PL+ I IG L+ FG+ + + E L + G SK + Sbjct: 320 PLEFIPNIGGKTIEKLVNYFGSELYALHHVPYEELEKVIGTSKAL 364 >gi|309810827|ref|ZP_07704628.1| conserved hypothetical protein [Dermacoccus sp. Ellin185] gi|308435133|gb|EFP58964.1| conserved hypothetical protein [Dermacoccus sp. Ellin185] Length = 359 Score = 45.1 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 6/38 (15%), Positives = 19/38 (50%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L+ FG+++ + + + L +++G+ + A + Sbjct: 309 RLVDHFGSLQSLLAADFDDLLTVDGVGESRARAVREGL 346 >gi|317126829|ref|YP_004093111.1| DNA integrity scanning, DisA, linker region [Bacillus cellulosilyticus DSM 2522] gi|315471777|gb|ADU28380.1| DNA integrity scanning, DisA, linker region [Bacillus cellulosilyticus DSM 2522] Length = 360 Score = 45.1 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 25/52 (48%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++I I PL L+ F + I R++ E L ++GI + A KI Sbjct: 296 ILNKIPRIPPLVVENLIDKFIELPEIMRANIEELDEVDGIGEARARKIKEGL 347 >gi|260773253|ref|ZP_05882169.1| DNA ligase [Vibrio metschnikovii CIP 69.14] gi|260612392|gb|EEX37595.1| DNA ligase [Vibrio metschnikovii CIP 69.14] Length = 591 Score = 45.1 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 25/51 (49%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 +G L Q F T++ IS++S E L ++ + +A ++ F + + Sbjct: 442 VGEATAMNLAQHFCTLEAISQASIEQLIGVQDVGMIVASHVHAFFSQEKNQ 492 >gi|260175035|ref|ZP_05761447.1| DNA ligase [Bacteroides sp. D2] gi|315923266|ref|ZP_07919506.1| DNA ligase [Bacteroides sp. D2] gi|313697141|gb|EFS33976.1| DNA ligase [Bacteroides sp. D2] Length = 666 Score = 45.1 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 26/50 (52%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + + +SF + + ++ E L SI+ I +KIA I +F ++ Sbjct: 516 VGETVAKKIAKSFENIDDLQQADLEKLVSIDEIGEKIAQSILAYFANESN 565 >gi|307265143|ref|ZP_07546702.1| conserved hypothetical protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306919765|gb|EFN49980.1| conserved hypothetical protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 390 Score = 45.1 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%) Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKI 599 PL+ I IG L+ FG+ + + E L + G SK + Sbjct: 320 PLEFIPNIGGKTIEKLVNYFGSELYALHHVPYEELEKVIGTSKAL 364 >gi|290476106|ref|YP_003469005.1| DNA ligase [Xenorhabdus bovienii SS-2004] gi|289175438|emb|CBJ82241.1| DNA ligase [Xenorhabdus bovienii SS-2004] Length = 672 Score = 45.1 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 3/70 (4%) Query: 548 RRKKAAYSPL---DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 + KK ++ I +G L+ F T++ + + E L +++ + +A + Sbjct: 502 KSKKTTFARFIYSLGIREVGEATAANLVAHFVTLEKLRAADTEALIAVQDVGGVVASHVV 561 Query: 605 NHFHKNTSHT 614 N F++ + T Sbjct: 562 NFFNEPHNQT 571 >gi|312144274|ref|YP_003995720.1| DNA integrity scanning, DisA, linker region [Halanaerobium sp. 'sapolanicus'] gi|311904925|gb|ADQ15366.1| DNA integrity scanning, DisA, linker region [Halanaerobium sp. 'sapolanicus'] Length = 359 Score = 45.1 bits (105), Expect = 0.033, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 20/42 (47%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L+ F ++ I R+S + L ++GI + A I + + Sbjct: 307 IENLVDEFKDLQAIIRASADELDDVDGIGEVRAQAIKDGLRR 348 >gi|302392405|ref|YP_003828225.1| DNA protecting protein DprA [Acetohalobium arabaticum DSM 5501] gi|302204482|gb|ADL13160.1| DNA protecting protein DprA [Acetohalobium arabaticum DSM 5501] Length = 367 Score = 45.1 bits (105), Expect = 0.033, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 22/47 (46%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 L + G+G + LL FG + I ++S + L + I K + I Sbjct: 10 LINLQGLGSRIIKNLLDYFGDAESIWKASQKELCKVRLIGTKRSQHI 56 >gi|187734950|ref|YP_001877062.1| DNA protecting protein DprA [Akkermansia muciniphila ATCC BAA-835] gi|187425002|gb|ACD04281.1| DNA protecting protein DprA [Akkermansia muciniphila ATCC BAA-835] Length = 375 Score = 45.1 bits (105), Expect = 0.033, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 28/48 (58%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 L+ I G+GP+R LLQ F + ++I S L I G+ ++AC+I Sbjct: 9 ALNLIPGLGPVRIMRLLQVFASPELILESPSSLLMEIPGVGAQLACRI 56 >gi|150015319|ref|YP_001307573.1| RecD/TraA family helicase [Clostridium beijerinckii NCIMB 8052] gi|149901784|gb|ABR32617.1| helicase, RecD/TraA family [Clostridium beijerinckii NCIMB 8052] Length = 742 Score = 45.1 bits (105), Expect = 0.033, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 16/66 (24%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN------------ 605 I+GIGP+ + +++ FG T+ I + E L IEGI +K IY Sbjct: 88 IHGIGPVTAKKIIERFGEETLD-IMENHIERLMEIEGIGEKKFQIIYESYIEQQGLKDII 146 Query: 606 -HFHKN 610 +FHK+ Sbjct: 147 LYFHKH 152 >gi|164514842|emb|CAP47618.1| putative integron gene cassette protein [uncultured bacterium] Length = 161 Score = 45.1 bits (105), Expect = 0.033, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Query: 10 PGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN--NHTHRITHMISQIN 56 PGVY G LYVG+ +L+ R++ + + +++ ++++I Sbjct: 41 PGVYLF-SENGSPLYVGRTNSLRSRLQQHCRPSSGHNSAPFAFLLARIA 88 >gi|153003607|ref|YP_001377932.1| DNA ligase, NAD-dependent [Anaeromyxobacter sp. Fw109-5] gi|166215389|sp|A7H8A2|DNLJ_ANADF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|152027180|gb|ABS24948.1| DNA ligase, NAD-dependent [Anaeromyxobacter sp. Fw109-5] Length = 699 Score = 45.1 bits (105), Expect = 0.033, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 19/48 (39%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 I +G L + FG + +S + L ++ + + A +I Sbjct: 548 GIPQVGEATAATLARHFGELARFMDASEDALLAVRDVGPETAREIRAW 595 >gi|147920562|ref|YP_685641.1| DNA repair and recombination protein RadA [uncultured methanogenic archaeon RC-I] gi|110621037|emb|CAJ36315.1| DNA repair/recombination protein A [uncultured methanogenic archaeon RC-I] Length = 323 Score = 45.1 bits (105), Expect = 0.033, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 558 DEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606 +++ G+GP L ++ + +++ I+ +SP LA+ + + A KI Sbjct: 8 EDLPGVGPATAEKLKEAGYTSIEAIAVASPSELAAAAEVGENTASKIVAA 57 >gi|331235911|ref|XP_003330615.1| excision repair protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309309605|gb|EFP86196.1| excision repair protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 264 Score = 45.1 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 S L I G+ L +F + + I +SP L+ G+ +K ++ F+ + Sbjct: 193 QLTSVLTTIRGLNKTDVMTLATNFRSFRQIVEASPSELSLCPGLGEKKVKRLLEAFNSDF 252 Query: 612 SHTP 615 + P Sbjct: 253 RNFP 256 >gi|158312936|ref|YP_001505444.1| DNA ligase, NAD-dependent [Frankia sp. EAN1pec] gi|254781334|sp|A8L538|DNLJ_FRASN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|158108341|gb|ABW10538.1| DNA ligase, NAD-dependent [Frankia sp. EAN1pec] Length = 703 Score = 45.1 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L + ++ I+ + E LA+++G+ KIA + + F Sbjct: 534 SIRHVGPTAARGLARELRSLDAIATAPAERLAAVDGVGPKIADAVVDWF 582 >gi|313633203|gb|EFS00081.1| ComE operon protein 1 [Listeria seeligeri FSL N1-067] Length = 202 Score = 45.1 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 A+ S L + GIG + +++ + + + + E L ++ GI +K K+ + Sbjct: 146 ASTSDLQTVPGIGESKATAIIEY-REKEGLFQ-TIEDLQNVTGIGEKTIEKLKEYL 199 >gi|332686164|ref|YP_004455938.1| DNA ligase [Melissococcus plutonius ATCC 35311] gi|332370173|dbj|BAK21129.1| DNA ligase [Melissococcus plutonius ATCC 35311] Length = 678 Score = 45.1 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 29/51 (56%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G ++L + FG +K +S+++ E++ ++ I + IA + +F K Sbjct: 517 GIRHVGAKAAKILAEHFGDLKTLSQANQESIMVLDSIGEIIAESVVAYFEK 567 >gi|310778043|ref|YP_003966376.1| DNA ligase, NAD-dependent [Ilyobacter polytropus DSM 2926] gi|309747366|gb|ADO82028.1| DNA ligase, NAD-dependent [Ilyobacter polytropus DSM 2926] Length = 677 Score = 45.1 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 4/65 (6%) Query: 547 KRRK--KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+R+ K+ YS I +G LL + + +++ S E L I+G+ KK+A +Y Sbjct: 508 KKREYPKSLYS--LGIPHVGKFLASLLAKESKNIDKLAQMSIEDLLEIDGVGKKVAESVY 565 Query: 605 NHFHK 609 F Sbjct: 566 GVFRN 570 >gi|182677699|ref|YP_001831845.1| DNA ligase, NAD-dependent [Beijerinckia indica subsp. indica ATCC 9039] gi|254781257|sp|B2IGH4|DNLJ_BEII9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|182633582|gb|ACB94356.1| DNA ligase, NAD-dependent [Beijerinckia indica subsp. indica ATCC 9039] Length = 699 Score = 45.1 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 13/62 (20%) Query: 559 EINGIGP--LRKRLLLQSFGTVKMISR-SSPET--------LASIEGISKKIACKIYNHF 607 I +G R+ ++FGT + +S L ++EG +A I++ F Sbjct: 539 GIRHVGETNARRAA--RAFGTFDALRAVASRAEEGSEERSELTNVEGFGPVVAEAIFDFF 596 Query: 608 HK 609 H+ Sbjct: 597 HE 598 >gi|332200505|gb|EGJ14577.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA41317] Length = 648 Score = 45.1 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 29/55 (52%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G +LLLQ F +++ +S++ E +ASIE + IA + +F S Sbjct: 498 GIRHVGSKVSQLLLQYFHSIENLSQADSEEVASIESLGGVIAKSLQTYFATEGSE 552 >gi|270262950|ref|ZP_06191221.1| DNA ligase, NAD-dependent [Serratia odorifera 4Rx13] gi|270043634|gb|EFA16727.1| DNA ligase, NAD-dependent [Serratia odorifera 4Rx13] Length = 673 Score = 45.1 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 6/48 (12%), Positives = 18/48 (37%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +G L FG + + + + L + + + +A + + + Sbjct: 520 VGEATAANLAAHFGELPKLYAADIDALKQVPDVGEVVAKHVRHFLDEE 567 >gi|311233982|gb|ADP86836.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris RCH1] Length = 818 Score = 45.1 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 22/54 (40%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G R L +F + + + ETL + I ++A I + F + Sbjct: 572 GIRHVGEQTARTLAANFTDLDALREADAETLQQLPDIGPEVAGSIRSFFANEGN 625 >gi|183603490|ref|ZP_02717204.2| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC3059-06] gi|183576581|gb|EDT97109.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC3059-06] Length = 648 Score = 45.1 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 29/55 (52%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G +LLLQ F +++ +S++ E +ASIE + IA + +F S Sbjct: 498 GIRHVGSKVSQLLLQYFHSIENLSQADSEEVASIESLGGVIAKSLQTYFATEGSE 552 >gi|168486469|ref|ZP_02710977.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC1087-00] gi|183570508|gb|EDT91036.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC1087-00] Length = 652 Score = 45.1 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 29/55 (52%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G +LLLQ F +++ +S++ E +ASIE + IA + +F S Sbjct: 502 GIRHVGSKVSQLLLQYFHSIENLSQADSEEVASIESLGGVIAKSLQTYFATEGSE 556 >gi|168483195|ref|ZP_02708147.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC1873-00] gi|168492012|ref|ZP_02716155.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC0288-04] gi|221231854|ref|YP_002511006.1| DNA ligase [Streptococcus pneumoniae ATCC 700669] gi|225854613|ref|YP_002736125.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae JJA] gi|254781427|sp|B8ZPV9|DNLJ_STRPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781431|sp|C1CEA4|DNLJ_STRZJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|172043461|gb|EDT51507.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC1873-00] gi|183573785|gb|EDT94313.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC0288-04] gi|220674314|emb|CAR68857.1| DNA ligase [Streptococcus pneumoniae ATCC 700669] gi|225722247|gb|ACO18100.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae JJA] gi|332201605|gb|EGJ15675.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA47368] Length = 652 Score = 45.1 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 29/55 (52%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G +LLLQ F +++ +S++ E +ASIE + IA + +F S Sbjct: 502 GIRHVGSKVSQLLLQYFHSIENLSQADSEEVASIESLGGVIAKSLQTYFATEGSE 556 >gi|168215804|ref|ZP_02641429.1| helicase, RecD/TraA family [Clostridium perfringens NCTC 8239] gi|182382061|gb|EDT79540.1| helicase, RecD/TraA family [Clostridium perfringens NCTC 8239] Length = 744 Score = 45.1 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I GIGP+ + ++ FG T+ I ++ E L IEGI KK I + + Sbjct: 88 IQGIGPVTAKKIVNKFGEDTL-NILDNNIERLKEIEGIGKKKLETIIESYRE 138 >gi|169344241|ref|ZP_02865223.1| helicase, RecD/TraA family [Clostridium perfringens C str. JGS1495] gi|169297700|gb|EDS79800.1| helicase, RecD/TraA family [Clostridium perfringens C str. JGS1495] Length = 744 Score = 45.1 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I GIGP+ + ++ FG T+ I ++ E L IEGI KK I + + Sbjct: 88 IQGIGPVTAKKIVNKFGEDTL-NILDNNIERLKEIEGIGKKKLETIIESYRE 138 >gi|149012887|ref|ZP_01833800.1| DNA ligase [Streptococcus pneumoniae SP19-BS75] gi|182684133|ref|YP_001835880.1| DNA ligase [Streptococcus pneumoniae CGSP14] gi|254781428|sp|B2IPZ1|DNLJ_STRPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|147763176|gb|EDK70116.1| DNA ligase [Streptococcus pneumoniae SP19-BS75] gi|182629467|gb|ACB90415.1| DNA ligase [Streptococcus pneumoniae CGSP14] gi|301801994|emb|CBW34723.1| DNA ligase [Streptococcus pneumoniae INV200] Length = 652 Score = 45.1 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 29/55 (52%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G +LLLQ F +++ +S++ E +ASIE + IA + +F S Sbjct: 502 GIRHVGSKVSQLLLQYFHSIENLSQADSEEVASIESLGGVIAKSLQTYFATEGSE 556 >gi|111658008|ref|ZP_01408712.1| hypothetical protein SpneT_02000805 [Streptococcus pneumoniae TIGR4] Length = 648 Score = 45.1 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 29/55 (52%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G +LLLQ F +++ +S++ E +ASIE + IA + +F S Sbjct: 498 GIRHVGSKVSQLLLQYFHSIENLSQADSEEVASIESLGGVIAKSLQTYFATEGSE 552 >gi|46580019|ref|YP_010827.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris str. Hildenborough] gi|81404693|sp|Q72BM7|DNLJ_DESVH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|46449435|gb|AAS96086.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris str. Hildenborough] Length = 799 Score = 45.1 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 22/54 (40%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G R L +F + + + ETL + I ++A I + F + Sbjct: 553 GIRHVGEQTARTLAANFTDLDALREADAETLQQLPDIGPEVAGSIRSFFANEGN 606 >gi|15900984|ref|NP_345588.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae TIGR4] gi|81531953|sp|Q97QT2|DNLJ_STRPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|14972593|gb|AAK75228.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae TIGR4] Length = 652 Score = 45.1 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 29/55 (52%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G +LLLQ F +++ +S++ E +ASIE + IA + +F S Sbjct: 502 GIRHVGSKVSQLLLQYFHSIENLSQADSEEVASIESLGGVIAKSLQTYFATEGSE 556 >gi|326562883|gb|EGE13170.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis 46P47B1] gi|326563676|gb|EGE13928.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis 103P14B1] gi|326565244|gb|EGE15429.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis 12P80B1] gi|326570251|gb|EGE20296.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis BC8] gi|326570988|gb|EGE21012.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis BC7] gi|326573284|gb|EGE23252.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis 101P30B1] gi|326576898|gb|EGE26804.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis O35E] Length = 204 Score = 45.1 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 5/61 (8%) Query: 548 RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603 R + + L +ING+G +L + +V I + L + GI KK A +I Sbjct: 66 RHDRDIFRKLIKINGVGAKMALAMLSTL-SVAEIKHAIETDYDAALVRVPGIGKKTAQRI 124 Query: 604 Y 604 Sbjct: 125 L 125 >gi|325278944|ref|YP_004251486.1| DNA ligase [Odoribacter splanchnicus DSM 20712] gi|324310753|gb|ADY31306.1| DNA ligase [Odoribacter splanchnicus DSM 20712] Length = 829 Score = 45.1 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 IG R L +SF + + + E L +E I +++A I +F K + Sbjct: 683 IGETASRNLAKSFRELTRLMEADFEQLTEVEDIGEQMANSILRYFGKEEN 732 Score = 42.4 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 22/53 (41%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I GI + LL F + +S +S + ++EGI A I F N Sbjct: 585 NIPGINWHKADLLAARFDYIYELSVASAAEIRAVEGIDADEADSIVRFFRSNE 637 Score = 40.9 bits (94), Expect = 0.59, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I I L FG+++ + +S + L+++ G + +I ++F Sbjct: 508 GIKNISSRNAETLAGHFGSLEAYAAASKQELSAVIG-DETTVNRILDYFR 556 >gi|307067701|ref|YP_003876667.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Streptococcus pneumoniae AP200] gi|306409238|gb|ADM84665.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Streptococcus pneumoniae AP200] Length = 648 Score = 45.1 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G +LLLQ F +++ + ++ E +ASIE + IA + +F S Sbjct: 498 GIRHVGSKASQLLLQYFHSIENLYQADSEEVASIESLGGVIAKSLQTYFATEGSE 552 >gi|225858927|ref|YP_002740437.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae 70585] gi|254781425|sp|C1C7B1|DNLJ_STRP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|225720821|gb|ACO16675.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae 70585] Length = 652 Score = 45.1 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G +LLLQ F +++ + ++ E +ASIE + IA + +F S Sbjct: 502 GIRHVGSKASQLLLQYFHSIENLYQADSEEVASIESLGGVIAKSLQTYFATEGSE 556 >gi|164686584|ref|ZP_02210612.1| hypothetical protein CLOBAR_00176 [Clostridium bartlettii DSM 16795] gi|164604313|gb|EDQ97778.1| hypothetical protein CLOBAR_00176 [Clostridium bartlettii DSM 16795] Length = 355 Score = 45.1 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 18/40 (45%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L+ FG + I +S E L +EGI + A I N Sbjct: 304 IENLVNYFGNFQEILHASIEELDEVEGIGEIRATYIRNGL 343 >gi|148986045|ref|ZP_01819066.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP3-BS71] gi|147921879|gb|EDK73005.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP3-BS71] gi|301800082|emb|CBW32679.1| DNA ligase [Streptococcus pneumoniae OXC141] Length = 652 Score = 45.1 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G +LLLQ F +++ + ++ E +ASIE + IA + +F S Sbjct: 502 GIRHVGSKASQLLLQYFHSIENLYQADSEEVASIESLGGVIAKSLQTYFATEGSE 556 >gi|149006206|ref|ZP_01829918.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP18-BS74] gi|225856757|ref|YP_002738268.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae P1031] gi|307127352|ref|YP_003879383.1| NAD-dependent DNA ligase [Streptococcus pneumoniae 670-6B] gi|254781432|sp|C1CKI0|DNLJ_STRZP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|147761983|gb|EDK68945.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP18-BS74] gi|225725530|gb|ACO21382.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae P1031] gi|306484414|gb|ADM91283.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae 670-6B] gi|332075451|gb|EGI85920.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA41301] Length = 652 Score = 45.1 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G +LLLQ F +++ + ++ E +ASIE + IA + +F S Sbjct: 502 GIRHVGSKASQLLLQYFHSIENLYQADSEEVASIESLGGVIAKSLQTYFATEGSE 556 >gi|148998387|ref|ZP_01825829.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP11-BS70] gi|168576158|ref|ZP_02722052.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae MLV-016] gi|194398076|ref|YP_002037745.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae G54] gi|225861080|ref|YP_002742589.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae Taiwan19F-14] gi|298230922|ref|ZP_06964603.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254162|ref|ZP_06977748.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502866|ref|YP_003724806.1| DNA ligase (NAD(+)) [Streptococcus pneumoniae TCH8431/19A] gi|254781424|sp|B5E4M9|DNLJ_STRP4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781433|sp|C1CRL7|DNLJ_STRZT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|147755784|gb|EDK62829.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP11-BS70] gi|183577935|gb|EDT98463.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae MLV-016] gi|194357743|gb|ACF56191.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae G54] gi|225727034|gb|ACO22885.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae Taiwan19F-14] gi|298238461|gb|ADI69592.1| DNA ligase (NAD(+)) [Streptococcus pneumoniae TCH8431/19A] gi|327389325|gb|EGE87670.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA04375] gi|332075071|gb|EGI85542.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA17545] Length = 652 Score = 45.1 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G +LLLQ F +++ + ++ E +ASIE + IA + +F S Sbjct: 502 GIRHVGSKASQLLLQYFHSIENLYQADSEEVASIESLGGVIAKSLQTYFATEGSE 556 >gi|313637785|gb|EFS03136.1| ComE operon protein 1 [Listeria seeligeri FSL S4-171] Length = 201 Score = 45.1 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 A+ S L + GIG + +++ + + + + E L ++ GI +K K+ + Sbjct: 145 ASTSDLQTVPGIGESKATAIIEY-REKEGLFQ-TIEDLQNVTGIGEKTIEKLKEYL 198 >gi|261366044|ref|ZP_05978927.1| competence protein comEA [Neisseria mucosa ATCC 25996] gi|288565355|gb|EFC86915.1| competence protein comEA [Neisseria mucosa ATCC 25996] Length = 105 Score = 45.1 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 18/67 (26%) Query: 555 SPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 S L+ + GIGP + + + F +V E L +++GI I++ Sbjct: 35 SELEALPGIGPAKAKAIADYRQQHGAFKSV--------EELKNVKGIG----EGIFSKLK 82 Query: 609 KNTSHTP 615 + P Sbjct: 83 AEATVAP 89 >gi|261365360|ref|ZP_05978243.1| competence protein comEA [Neisseria mucosa ATCC 25996] gi|288566145|gb|EFC87705.1| competence protein comEA [Neisseria mucosa ATCC 25996] Length = 96 Score = 45.1 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 18/67 (26%) Query: 555 SPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 S L+ + GIGP + + + F +V E L +++GI I++ Sbjct: 29 SELEALPGIGPAKAKAIADYRQQHGAFKSV--------EELKNVKGIG----EGIFSKLK 76 Query: 609 KNTSHTP 615 + P Sbjct: 77 AEATVAP 83 >gi|269121064|ref|YP_003309241.1| hypothetical protein Sterm_2457 [Sebaldella termitidis ATCC 33386] gi|268614942|gb|ACZ09310.1| protein of unknown function DUF147 [Sebaldella termitidis ATCC 33386] Length = 351 Score = 45.1 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 26/54 (48%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L EI I LL+++F + I ++ E +A I+GISK A I + Sbjct: 289 ILSEIKRITKKDIELLIKAFNDLPEILDATSEDIAKIKGISKFKASSIVRGLKR 342 >gi|261365906|ref|ZP_05978789.1| competence protein comEA [Neisseria mucosa ATCC 25996] gi|261366047|ref|ZP_05978930.1| competence protein comEA [Neisseria mucosa ATCC 25996] gi|261366054|ref|ZP_05978937.1| competence protein comEA [Neisseria mucosa ATCC 25996] gi|261366066|ref|ZP_05978949.1| competence protein comEA [Neisseria mucosa ATCC 25996] gi|288565329|gb|EFC86889.1| competence protein comEA [Neisseria mucosa ATCC 25996] gi|288565337|gb|EFC86897.1| competence protein comEA [Neisseria mucosa ATCC 25996] gi|288565353|gb|EFC86913.1| competence protein comEA [Neisseria mucosa ATCC 25996] gi|288565518|gb|EFC87078.1| competence protein comEA [Neisseria mucosa ATCC 25996] Length = 99 Score = 45.1 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 18/67 (26%) Query: 555 SPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 S L+ + GIGP + + + F +V E L +++GI I++ Sbjct: 29 SELEALPGIGPAKAKAIADYRQQHGAFKSV--------EELKNVKGIG----EGIFSKLK 76 Query: 609 KNTSHTP 615 + P Sbjct: 77 AEATVAP 83 >gi|310642634|ref|YP_003947392.1| hypothetical yqxk protein [Paenibacillus polymyxa SC2] gi|309247584|gb|ADO57151.1| Hypothetical yqxK protein [Paenibacillus polymyxa SC2] Length = 398 Score = 45.1 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMIS-RSSPETLASIEGISKKIACKI 603 PL+ I G+G + LL +FGT I + E L+ + G K +A +I Sbjct: 328 PLEFIPGLGKAKLNQLLAAFGTEMNILHEVTQEELSEVVG--KVLAEQI 374 >gi|294496956|ref|YP_003560656.1| DNA integrity scanning protein DisA [Bacillus megaterium QM B1551] gi|295702323|ref|YP_003595398.1| DNA integrity scanning protein DisA [Bacillus megaterium DSM 319] gi|294346893|gb|ADE67222.1| DNA integrity scanning protein DisA [Bacillus megaterium QM B1551] gi|294799982|gb|ADF37048.1| DNA integrity scanning protein DisA [Bacillus megaterium DSM 319] Length = 359 Score = 45.1 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 20/42 (47%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L+ G +K I+ +S E L +EGI + A KI + Sbjct: 307 IENLIDELGDLKTIADASVEELDEVEGIGEIRARKIREGLKR 348 >gi|224370717|ref|YP_002604881.1| RadC3 [Desulfobacterium autotrophicum HRM2] gi|223693434|gb|ACN16717.1| RadC3 [Desulfobacterium autotrophicum HRM2] Length = 279 Score = 45.1 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 8/30 (26%), Positives = 15/30 (50%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKK 598 + LL F T++ + +S E L + G+ Sbjct: 91 KALLDRFKTLQGVFEASVEELCRVNGVGPS 120 >gi|254829489|ref|ZP_05234176.1| DNA ligase [Listeria monocytogenes FSL N3-165] gi|258601904|gb|EEW15229.1| DNA ligase [Listeria monocytogenes FSL N3-165] Length = 671 Score = 45.1 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 23/53 (43%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G + L F T+ + + ETL +I I +K+A I +F Sbjct: 508 GIRHVGAKAAKSLAVHFETMDNLKVADKETLTNINDIGEKMADSIVTYFANEE 560 >gi|168205588|ref|ZP_02631593.1| helicase, RecD/TraA family [Clostridium perfringens E str. JGS1987] gi|170662877|gb|EDT15560.1| helicase, RecD/TraA family [Clostridium perfringens E str. JGS1987] Length = 744 Score = 45.1 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I GIGP+ + ++ FG T+ I ++ E L IEGI KK I + + Sbjct: 88 IQGIGPVTAKKIVNKFGEDTL-NILDNNIERLKEIEGIGKKKLETIIESYRE 138 >gi|18311157|ref|NP_563091.1| helicase, RecD/TraA family [Clostridium perfringens str. 13] gi|168213721|ref|ZP_02639346.1| helicase, RecD/TraA family [Clostridium perfringens CPE str. F4969] gi|182623921|ref|ZP_02951709.1| helicase, RecD/TraA family [Clostridium perfringens D str. JGS1721] gi|18145840|dbj|BAB81881.1| exodeoxyribonuclease V alpha subunit [Clostridium perfringens str. 13] gi|170714837|gb|EDT27019.1| helicase, RecD/TraA family [Clostridium perfringens CPE str. F4969] gi|177910814|gb|EDT73168.1| helicase, RecD/TraA family [Clostridium perfringens D str. JGS1721] Length = 744 Score = 45.1 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I GIGP+ + ++ FG T+ I ++ E L IEGI KK I + + Sbjct: 88 IQGIGPVTAKKIVNKFGEDTL-NILDNNIERLKEIEGIGKKKLETIIESYRE 138 >gi|332366022|gb|EGJ43778.1| competence protein [Streptococcus sanguinis SK1059] Length = 243 Score = 45.1 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 8/58 (13%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNH 606 A + L I+GIG R ++ G+ K S + L + GI K K+ + Sbjct: 187 ATEAELQTISGIGQKRASDIIAYRESNGSFK-----SVDDLKKVSGIGDKTLEKLKEY 239 >gi|296133173|ref|YP_003640420.1| hypothetical protein TherJR_1670 [Thermincola sp. JR] gi|296031751|gb|ADG82519.1| conserved hypothetical protein [Thermincola potens JR] Length = 396 Score = 45.1 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%) Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIA 600 PL + G+G LLQ FGT ++++ +S E L + G KKIA Sbjct: 324 PLSFVPGVGRKTVDKLLQCFGTEMEILHSASEEDLEKVAG--KKIA 367 >gi|268593162|ref|ZP_06127383.1| DNA ligase, NAD-dependent [Providencia rettgeri DSM 1131] gi|291311208|gb|EFE51661.1| DNA ligase, NAD-dependent [Providencia rettgeri DSM 1131] Length = 671 Score = 45.1 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 6/65 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I +G L + T++ + + E+L +++ I +A + Sbjct: 501 KSKQTTLARFIYALGIREVGEATAANLAAHYTTLEAVMTADEESLKTVQDIGHVVAKHVV 560 Query: 605 NHFHK 609 N F + Sbjct: 561 NFFRE 565 >gi|205374269|ref|ZP_03227068.1| ComE operon protein 1 [Bacillus coahuilensis m4-4] Length = 199 Score = 45.1 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 3/56 (5%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 A L+ + GIGP + ++ SS E + ++ GI K + ++ Sbjct: 144 ATKEELETLPGIGPAKAEAIITY---RDETLFSSIEEIENVPGIGTKTFESLKDYI 196 >gi|194219216|ref|XP_001490470.2| PREDICTED: excision repair cross-complementing rodent repair deficiency, complementation group 4 isoform 2 [Equus caballus] Length = 1008 Score = 45.1 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 L ++ G+ R L+ T+ ++ S + LA + G + A ++Y+ H + + Sbjct: 944 LLKMPGVNAKNCRSLMNHVKTIAELASLSQDQLAGVLG-NAANAKQLYDFIHTSYAE 999 >gi|110800894|ref|YP_696854.1| RecD/TraA family helicase [Clostridium perfringens ATCC 13124] gi|168210105|ref|ZP_02635730.1| helicase, RecD/TraA family [Clostridium perfringens B str. ATCC 3626] gi|110675541|gb|ABG84528.1| helicase, RecD/TraA family [Clostridium perfringens ATCC 13124] gi|170711774|gb|EDT23956.1| helicase, RecD/TraA family [Clostridium perfringens B str. ATCC 3626] Length = 744 Score = 45.1 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I GIGP+ + ++ FG T+ I ++ E L IEGI KK I + + Sbjct: 88 IQGIGPVTAKKIVNKFGEDTL-NILDNNIERLKEIEGIGKKKLETIIESYRE 138 >gi|125972876|ref|YP_001036786.1| hypothetical protein Cthe_0355 [Clostridium thermocellum ATCC 27405] gi|256005745|ref|ZP_05430700.1| conserved hypothetical protein [Clostridium thermocellum DSM 2360] gi|281417075|ref|ZP_06248095.1| conserved hypothetical protein [Clostridium thermocellum JW20] gi|125713101|gb|ABN51593.1| conserved hypothetical protein [Clostridium thermocellum ATCC 27405] gi|255990318|gb|EEU00445.1| conserved hypothetical protein [Clostridium thermocellum DSM 2360] gi|281408477|gb|EFB38735.1| conserved hypothetical protein [Clostridium thermocellum JW20] gi|316940887|gb|ADU74921.1| hypothetical protein Clo1313_1869 [Clostridium thermocellum DSM 1313] Length = 392 Score = 45.1 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 3/49 (6%) Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKI 603 PL+ + +GP L++ FG+ ++++ +S E L + +S+ IA I Sbjct: 323 PLEFLPKVGPKTIDKLIEFFGSEMRVLHYASYEELTKV--VSEDIAKNI 369 >gi|325981324|ref|YP_004293726.1| competence protein ComEA helix-hairpin-helix repeat-containing protein [Nitrosomonas sp. AL212] gi|325530843|gb|ADZ25564.1| competence protein ComEA helix-hairpin-helix repeat protein [Nitrosomonas sp. AL212] Length = 95 Score = 45.1 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 17/69 (24%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNHF-- 607 L+ + GIGP + + +++ F +S + LA + GI + ++ + Sbjct: 31 ELESLQGIGPAKAKAIIEHREKSGTF--------ASVDDLAKVSGIGQGTIKQLRDVITV 82 Query: 608 -HKNTSHTP 615 + P Sbjct: 83 EGEKAPEAP 91 >gi|239827887|ref|YP_002950511.1| DNA repair protein RadC [Geobacillus sp. WCH70] gi|259551864|sp|C5D5H7|Y2550_GEOSW RecName: Full=UPF0758 protein GWCH70_2550 gi|239808180|gb|ACS25245.1| DNA repair protein RadC [Geobacillus sp. WCH70] Length = 226 Score = 45.1 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 20/38 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 LL+ F ++++ ++ E + SI+GI A +I Sbjct: 51 RLLKHFEGLRLLKDATIEEITSIKGIGTTKAVQILAAI 88 >gi|254832503|ref|ZP_05237158.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 10403S] Length = 671 Score = 45.1 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 23/53 (43%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G + L F T+ + + ETL +I I +K+A I +F Sbjct: 508 GIRHVGAKAAKSLAVHFETMDNLKVADKETLTNINDIGEKMADSIVTYFANEE 560 >gi|110803510|ref|YP_699450.1| RecD/TraA family helicase [Clostridium perfringens SM101] gi|110684011|gb|ABG87381.1| helicase, RecD/TraA family [Clostridium perfringens SM101] Length = 744 Score = 45.1 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I GIGP+ + ++ FG T+ I ++ E L IEGI KK I + + Sbjct: 88 IQGIGPVTAKKIVNKFGEDTL-NILDNNIERLKEIEGIGKKKLETIIESYRE 138 >gi|134300388|ref|YP_001113884.1| DNA repair protein RadC [Desulfotomaculum reducens MI-1] gi|172044335|sp|A4J7K6|Y2549_DESRM RecName: Full=UPF0758 protein Dred_2549 gi|134053088|gb|ABO51059.1| DNA replication and repair protein RadC [Desulfotomaculum reducens MI-1] Length = 227 Score = 45.1 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 19/37 (51%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L F ++ +S+++ E L+ I+G+ A ++ Sbjct: 53 LFSHFKDLRALSQATIEELSQIKGVGPVKAVQVKAAL 89 >gi|317133714|ref|YP_004090318.1| Excinuclease ABC C subunit domain protein [Ruminococcus albus 7] gi|315450872|gb|ADU24432.1| Excinuclease ABC C subunit domain protein [Ruminococcus albus 7] Length = 137 Score = 45.1 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 11/91 (12%) Query: 8 ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67 P +Y + V+YVG N+ R+ ++ + +++ I T + Sbjct: 35 RSPYIYLFYNNNNIVIYVGHTQNIANRMSKHIEESPFW-------EEVSYIMCAETPN-L 86 Query: 68 EALL-LEANMIKRLKPRFNILLRDDKSFPYI 97 +L E I++ KP++N R K PY+ Sbjct: 87 NSLADYERYYIQKYKPKYNK--RGFKKPPYL 115 >gi|296113247|ref|YP_003627185.1| holliday junction DNA helicase RuvA [Moraxella catarrhalis RH4] gi|295920941|gb|ADG61292.1| holliday junction DNA helicase RuvA [Moraxella catarrhalis RH4] Length = 204 Score = 45.1 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 5/61 (8%) Query: 548 RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603 R + + L +ING+G +L + +V I + L + GI KK A +I Sbjct: 66 RHDRDIFRKLIKINGVGAKMALAMLSTL-SVAEIKHAIETDYDAALVRVPGIGKKTAQRI 124 Query: 604 Y 604 Sbjct: 125 L 125 >gi|15807063|ref|NP_295792.1| DNA ligase [Deinococcus radiodurans R1] gi|81550876|sp|Q9RSQ5|DNLJ_DEIRA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|6459863|gb|AAF11619.1|AE002043_4 DNA ligase [Deinococcus radiodurans R1] Length = 700 Score = 45.1 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 24/45 (53%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + L ++FGT++ + ++PE + ++ G+ IA + Sbjct: 529 VGQRNAQALARAFGTLEGLLAATPEQIEAVPGLGGIIAQSVTASL 573 >gi|26553637|ref|NP_757571.1| NAD-dependent DNA ligase [Mycoplasma penetrans HF-2] gi|81748016|sp|Q8EWL9|DNLJ_MYCPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|26453643|dbj|BAC43975.1| NAD-dependent DNA ligase [Mycoplasma penetrans HF-2] Length = 701 Score = 45.1 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 547 KRRKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K + + L I +G + L + F +++ ++ ++ E + + +K++ + Sbjct: 532 KSKSNSMEKFLTGLGIKYVGLRAAKALSKRFKSIEELAMATREEIEQVPDTGEKMSESLV 591 Query: 605 NHF 607 N F Sbjct: 592 NWF 594 >gi|326776069|ref|ZP_08235334.1| Restriction endonuclease, type II, Eco29kI [Streptomyces cf. griseus XylebKG-1] gi|326656402|gb|EGE41248.1| Restriction endonuclease, type II, Eco29kI [Streptomyces cf. griseus XylebKG-1] Length = 278 Score = 45.1 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 12/80 (15%) Query: 8 ECPGVYQMLDIAGRVLYVGKA----YNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV- 62 E PGVYQ+ G ++YVGKA L R+++++ + I +I F Sbjct: 49 ERPGVYQLY-HKGALVYVGKADRRHKGLPGRLRNHLRKLSGRRNIHP-----ADISFRCL 102 Query: 63 -TCTEVEALLLEANMIKRLK 81 + AL E +I + Sbjct: 103 YVDEDFSALAPEQLLINHHR 122 >gi|320354711|ref|YP_004196050.1| NAD-dependent DNA ligase [Desulfobulbus propionicus DSM 2032] gi|320123213|gb|ADW18759.1| DNA ligase, NAD-dependent [Desulfobulbus propionicus DSM 2032] Length = 670 Score = 45.1 bits (105), Expect = 0.038, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 17/75 (22%) Query: 551 KAAYSPLDEIN--------------GI---GPLRKRLLLQSFGTVKMISRSSPETLASIE 593 K+A + L+ I GI G + +L + F ++ + + E L +E Sbjct: 494 KSARNILEAIEQRRSLPLAQFIAALGIRHVGEVTASVLAEHFRELRELMAAKKEALLRVE 553 Query: 594 GISKKIACKIYNHFH 608 GI ++ A + +F Sbjct: 554 GIGEQTADSVIEYFQ 568 >gi|167771605|ref|ZP_02443658.1| hypothetical protein ANACOL_02977 [Anaerotruncus colihominis DSM 17241] gi|167666245|gb|EDS10375.1| hypothetical protein ANACOL_02977 [Anaerotruncus colihominis DSM 17241] Length = 230 Score = 45.1 bits (105), Expect = 0.038, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 19/35 (54%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 L+ FG++ + ++ + L ++EGI + A + Sbjct: 49 RLIARFGSLDAVFDAAFDELCAVEGIGRNTATLLK 83 >gi|157693205|ref|YP_001487667.1| DNA repair protein RadC [Bacillus pumilus SAFR-032] gi|157681963|gb|ABV63107.1| DNA repair protein RadC [Bacillus pumilus SAFR-032] Length = 232 Score = 45.1 bits (105), Expect = 0.038, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 20/38 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 LLQ+FG ++ + ++ E ++ I G+ K A + Sbjct: 57 RLLQTFGGLRSVREATIEEMSKIRGVGKAKAISLLAAL 94 >gi|85057601|ref|YP_456517.1| NAD-dependent DNA ligase [Aster yellows witches'-broom phytoplasma AYWB] gi|123725342|sp|Q2NJF5|DNLJ_AYWBP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|84789706|gb|ABC65438.1| NAD-dependent DNA ligase [Aster yellows witches'-broom phytoplasma AYWB] Length = 671 Score = 45.1 bits (105), Expect = 0.038, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 52/155 (33%), Gaps = 30/155 (19%) Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI---QR 532 ++ ++ I +S G + + L+ D LY + Q Sbjct: 419 YFCLNPNCREQKIQKLIHFVSKNAMDINVLGEQTIITFFDKNLITKPSD--LYLLKNHQH 476 Query: 533 LRDEAHRFAITTHRKRRKKAAYSPLD-----------------EINGIGPLRKRLLLQSF 575 + E I+ K + LD I IG ++L + F Sbjct: 477 ILQE-----ISGF---GAKKITNILDAIEASKQKGFEDVLFALGIKHIGKKVSQVLAKYF 528 Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 T++ + +S+ +T+ I I KIA I +F + Sbjct: 529 QTIENLQQSTSDTITQIREIGIKIAQSIQQYFSNS 563 >gi|23098215|ref|NP_691681.1| NAD-dependent DNA ligase LigA [Oceanobacillus iheyensis HTE831] gi|81741485|sp|Q8CXK6|DNLJ_OCEIH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|22776440|dbj|BAC12716.1| DNA ligase (polydeoxyribonucleotide synthase[NAD+]) [Oceanobacillus iheyensis HTE831] Length = 667 Score = 45.1 bits (105), Expect = 0.038, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 6/66 (9%) Query: 551 KAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L+ I IG + L F T++ + +++ E + +I+ I K+A I Sbjct: 497 KSKENSLERLLFGLGIRFIGSKAAKTLAMEFETMENLQKATYEDVLAIDEIGDKMADSIV 556 Query: 605 NHFHKN 610 +F + Sbjct: 557 QYFAEE 562 >gi|332982281|ref|YP_004463722.1| DNA ligase, NAD-dependent [Mahella australiensis 50-1 BON] gi|332699959|gb|AEE96900.1| DNA ligase, NAD-dependent [Mahella australiensis 50-1 BON] Length = 665 Score = 45.1 bits (105), Expect = 0.039, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 23/54 (42%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G +L + FG + + ++ L +I I KIA + F + + Sbjct: 512 GIPLVGTRAASILAERFGDIYELMKADQAQLTAIPEIGPKIAESVVTFFKQEQT 565 >gi|330833876|ref|YP_004408604.1| DNA repair and recombination protein RadA [Metallosphaera cuprina Ar-4] gi|329566015|gb|AEB94120.1| DNA repair and recombination protein RadA [Metallosphaera cuprina Ar-4] Length = 324 Score = 45.1 bits (105), Expect = 0.039, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 13/62 (20%) Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQS-----FGTVKMISRSSPETLASIEGISKKIAC 601 K+R K+ +++G+G + +L + +++ I+ +SP+ L+++ GI A Sbjct: 8 KKRIKSVK----DLSGVG----QAVLNKLNESGYSSLESIAVASPQDLSTVAGIPLATAQ 59 Query: 602 KI 603 +I Sbjct: 60 RI 61 >gi|319946751|ref|ZP_08020985.1| NAD-dependent DNA ligase LigA [Streptococcus australis ATCC 700641] gi|319746799|gb|EFV99058.1| NAD-dependent DNA ligase LigA [Streptococcus australis ATCC 700641] Length = 652 Score = 45.1 bits (105), Expect = 0.039, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 28/55 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G +LLLQ F ++ ++ + E +A+I+ + +A + +F + S Sbjct: 502 GIRHVGSKASQLLLQEFHSIPALAEAEVERIAAIDSLGMVVAESLKRYFAQEGSQ 556 >gi|86605248|ref|YP_474011.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab] gi|86553790|gb|ABC98748.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab] Length = 928 Score = 45.1 bits (105), Expect = 0.039, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 14/60 (23%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 D I G IGP R LLQ +G+++ I L I G KI + + Sbjct: 196 DNIPGVKGIGPKRAAELLQRYGSLEEI----FNHLGEIPG-------KIQQYLREGIPAA 244 >gi|312143465|ref|YP_003994911.1| DNA repair protein RadC [Halanaerobium sp. 'sapolanicus'] gi|311904116|gb|ADQ14557.1| DNA repair protein RadC [Halanaerobium sp. 'sapolanicus'] Length = 231 Score = 45.1 bits (105), Expect = 0.039, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 19/35 (54%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 + LL SFG ++ I S E L ++GI A +I Sbjct: 55 QDLLNSFGGLREILDLSCEELQEVKGIGLAKAAQI 89 >gi|284047985|ref|YP_003398324.1| DNA ligase, NAD-dependent [Acidaminococcus fermentans DSM 20731] gi|283952206|gb|ADB47009.1| DNA ligase, NAD-dependent [Acidaminococcus fermentans DSM 20731] Length = 675 Score = 45.1 bits (105), Expect = 0.039, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 19/49 (38%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G L + +GT+ + + E LA I IA + F Sbjct: 521 GIRHVGAKVAHTLARKYGTMDKLMAADQEDLAQTPDIGPVIAESVVTWF 569 >gi|218885555|ref|YP_002434876.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|254781315|sp|B8DJT6|DNLJ_DESVM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218756509|gb|ACL07408.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 808 Score = 45.1 bits (105), Expect = 0.039, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 20/56 (35%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G R L F + + + ETL + I ++A I F + Sbjct: 561 GIRHVGEQTARTLAAHFADLDALGAAQAETLQQLPDIGPEVAASIRAFFANEGNRA 616 >gi|188586289|ref|YP_001917834.1| conserved hypothetical protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350976|gb|ACB85246.1| conserved hypothetical protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 397 Score = 45.1 bits (105), Expect = 0.039, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%) Query: 545 HRKRRKKAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKI 603 H+K+ PL+++ GIG + L++ G +K+I S+ L + +S +I KI Sbjct: 317 HKKQGNYTYQVPLEDVPGIGNKTYKKLIRQLGPEIKIIHDSTESELGQV--VSARIIKKI 374 Query: 604 YNHFHKNTSHTP 615 + + N S TP Sbjct: 375 FQIRNGNISLTP 386 >gi|89100805|ref|ZP_01173657.1| ComEA [Bacillus sp. NRRL B-14911] gi|89084451|gb|EAR63600.1| ComEA [Bacillus sp. NRRL B-14911] Length = 136 Score = 45.1 bits (105), Expect = 0.039, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 14/59 (23%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 L +I GIGP + +++ F ++ E L I GI +K K+ ++ Sbjct: 84 ELQDIPGIGPSKAAAIIEYRETEGPFQSL--------EDLMQISGIGEKTFEKLKSYIK 134 >gi|300813436|ref|ZP_07093781.1| comEA protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512453|gb|EFK39608.1| comEA protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 204 Score = 45.1 bits (105), Expect = 0.040, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 3/56 (5%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 A+ L +I G+G ++ + S E L +++GI K K+ ++ Sbjct: 149 ASKDELMKIPGVGSKTADKIIDY---REKFQFKSVEDLKNVDGIGDKKFEKLKDYL 201 >gi|323703789|ref|ZP_08115427.1| DNA integrity scanning, DisA, linker region [Desulfotomaculum nigrificans DSM 574] gi|323531258|gb|EGB21159.1| DNA integrity scanning, DisA, linker region [Desulfotomaculum nigrificans DSM 574] Length = 361 Score = 45.1 bits (105), Expect = 0.040, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 19/40 (47%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L+ +FG ++ I +S + L +EGI + A I Sbjct: 307 IENLVATFGDLRTILAASIQELDEVEGIGEARARSIKEGL 346 >gi|76801091|ref|YP_326099.1| DNA repair and recombination protein RadA [Natronomonas pharaonis DSM 2160] gi|76556956|emb|CAI48530.1| DNA repair and recombination protein [Natronomonas pharaonis DSM 2160] Length = 345 Score = 45.1 bits (105), Expect = 0.040, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 A + L+E+ G+GP L ++ + + + I+ +SP L++ I + A I + Sbjct: 3 ATTADLEELPGVGPATADKLRENGYDSYQSIAVASPAELSNTADIGESNANDIIQAAREA 62 Query: 611 TS 612 Sbjct: 63 AD 64 >gi|172046060|sp|A8FFU0|Y2444_BACP2 RecName: Full=UPF0758 protein BPUM_2444 Length = 224 Score = 44.7 bits (104), Expect = 0.040, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 20/38 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 LLQ+FG ++ + ++ E ++ I G+ K A + Sbjct: 49 RLLQTFGGLRSVREATIEEMSKIRGVGKAKAISLLAAL 86 >gi|150401406|ref|YP_001325172.1| DNA repair and recombination protein RadA [Methanococcus aeolicus Nankai-3] gi|150014109|gb|ABR56560.1| DNA repair and recombination protein RadA [Methanococcus aeolicus Nankai-3] Length = 322 Score = 44.7 bits (104), Expect = 0.040, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 5/49 (10%) Query: 557 LDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIACK 602 L ++ G+GP L++ G I+ ++ L IEGIS+K A K Sbjct: 5 LTDLPGVGPSTAEKLIE--GGYIDFMKIATATIGELVDIEGISEKAAAK 51 >gi|323705317|ref|ZP_08116892.1| hypothetical protein ThexyDRAFT_1184 [Thermoanaerobacterium xylanolyticum LX-11] gi|323535219|gb|EGB24995.1| hypothetical protein ThexyDRAFT_1184 [Thermoanaerobacterium xylanolyticum LX-11] Length = 388 Score = 44.7 bits (104), Expect = 0.041, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 7/54 (12%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMIS---RSSPETLASIEGISKKIACKIYNH 606 PL+ + GIGP R L++ G+ I + E L + + +KIA I + Sbjct: 320 PLEFLPGIGPKTIRKLMREVGS--EIYVTHEAPFEQLKN--SVGEKIAKNILDA 369 >gi|282896837|ref|ZP_06304843.1| NAD-dependent DNA ligase [Raphidiopsis brookii D9] gi|281198246|gb|EFA73136.1| NAD-dependent DNA ligase [Raphidiopsis brookii D9] Length = 692 Score = 44.7 bits (104), Expect = 0.041, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 27/55 (49%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G + +LL + F TV ++ + + + GI +IA +Y FH + + Sbjct: 528 GIRHVGNVNAQLLSEKFTTVDKLATAKQSDIEGVYGIGVEIAQSVYQWFHISANQ 582 Score = 40.1 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 6/60 (10%) Query: 559 EINGIGPLRKRLL----LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +I GIG L L +V + + E L +E + K+ A K+ ++ + Sbjct: 462 DIKGIGEKLVHQLVDKGLVH--SVADLYSLTEEQLCGLERMGKRSAEKLVQVIRESKNQP 519 >gi|256393553|ref|YP_003115117.1| PHP domain-containing protein [Catenulispora acidiphila DSM 44928] gi|256359779|gb|ACU73276.1| PHP domain protein [Catenulispora acidiphila DSM 44928] Length = 579 Score = 44.7 bits (104), Expect = 0.041, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 3/48 (6%) Query: 559 EINGIGPLRKRLLLQSFG--TVKMISR-SSPETLASIEGISKKIACKI 603 +I G+GP LL + G +V + + + L + G+ +K I Sbjct: 96 QIPGVGPKTAVLLYRKLGIKSVDELRKAADAGKLKGLPGLGEKTVENI 143 >gi|226942058|ref|YP_002797132.1| Rossmann fold nucleotide-binding protein involved in DNA uptake [Laribacter hongkongensis HLHK9] gi|226716986|gb|ACO76124.1| Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [Laribacter hongkongensis HLHK9] Length = 383 Score = 44.7 bits (104), Expect = 0.041, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 I G+G +R LLQ+FG+ + + + L I + ++A I Sbjct: 36 IPGLGAVRLNRLLQAFGSAEAVLEAGTAGLTGI--VPARLAEAI 77 >gi|289808010|ref|ZP_06538639.1| nucleotide excision repair endonuclease [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 194 Score = 44.7 bits (104), Expect = 0.041, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 8/108 (7%) Query: 78 KRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASVDAVEKT 134 K+ +P FN LR ++ + ++++ + S FG FA+ A ++ Sbjct: 1 KKQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPNLFGLFANRRAALQS 56 Query: 135 INSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEKYM 181 + +L L + R R C F +KRC+G C G+ + + + Sbjct: 57 LQNLADEQKLCYGLLGLEPVSRGRACFRFALKRCAGACCGQETPQAHF 104 >gi|168034363|ref|XP_001769682.1| predicted protein [Physcomitrella patens subsp. patens] gi|162679031|gb|EDQ65483.1| predicted protein [Physcomitrella patens subsp. patens] Length = 279 Score = 44.7 bits (104), Expect = 0.041, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 20/35 (57%) Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 F T+ I +S E LA GI ++ ++Y+ FH+ Sbjct: 239 FETLTGIFSASMEDLARCPGIGERKVKRLYDAFHE 273 >gi|298492390|ref|YP_003722567.1| DNA ligase, NAD-dependent ['Nostoc azollae' 0708] gi|298234308|gb|ADI65444.1| DNA ligase, NAD-dependent ['Nostoc azollae' 0708] Length = 684 Score = 44.7 bits (104), Expect = 0.041, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 27/56 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + +LL + F TV+ ++ + + + GI +IA +Y F + T Sbjct: 525 GIRHVGSVNAQLLTEKFTTVEQLAAAKQSDIEGVYGIGAEIAQSVYQWFRTPANQT 580 >gi|293596227|ref|ZP_05229458.2| comE operon protein [Listeria monocytogenes FSL J1-194] gi|293593694|gb|EFG01455.1| comE operon protein [Listeria monocytogenes FSL J1-194] Length = 211 Score = 44.7 bits (104), Expect = 0.041, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 A L ++ GIG + +++ + + + + E L ++ GI +K K+ + Sbjct: 155 ATKDDLQQVPGIGESKATAIIEY-REKEGLFQ-TIEDLKNVSGIGEKTVEKLKEYL 208 Score = 39.3 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 7/32 (21%), Positives = 16/32 (50%), Gaps = 1/32 (3%) Query: 576 GTVK-MISRSSPETLASIEGISKKIACKIYNH 606 G+ K ++ ++ + L + GI + A I + Sbjct: 146 GSAKINLNSATKDDLQQVPGIGESKATAIIEY 177 >gi|254412782|ref|ZP_05026555.1| DNA polymerase I superfamily [Microcoleus chthonoplastes PCC 7420] gi|196180517|gb|EDX75508.1| DNA polymerase I superfamily [Microcoleus chthonoplastes PCC 7420] Length = 984 Score = 44.7 bits (104), Expect = 0.041, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 4/36 (11%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590 D I G IG LL FG+++ I +S + + Sbjct: 220 DNIPGVRGIGEKTAVKLLNDFGSLEGIY-ASLDQIK 254 >gi|46907712|ref|YP_014101.1| DNA-binding protein ComEA [Listeria monocytogenes serotype 4b str. F2365] gi|47094098|ref|ZP_00231823.1| comE operon protein 1 [Listeria monocytogenes str. 4b H7858] gi|258611690|ref|ZP_05241456.2| comE operon protein [Listeria monocytogenes FSL R2-503] gi|293596847|ref|ZP_05264778.2| comE operon protein [Listeria monocytogenes HPB2262] gi|300764851|ref|ZP_07074841.1| hypothetical protein LMHG_12882 [Listeria monocytogenes FSL N1-017] gi|11991257|gb|AAG42266.1|AF320589_1 competence protein 1 [Listeria monocytogenes] gi|46880981|gb|AAT04278.1| DNA-binding protein, ComEA family [Listeria monocytogenes serotype 4b str. F2365] gi|47017528|gb|EAL08336.1| comE operon protein 1 [Listeria monocytogenes str. 4b H7858] gi|258605410|gb|EEW18018.1| comE operon protein [Listeria monocytogenes FSL R2-503] gi|293582969|gb|EFF95001.1| comE operon protein [Listeria monocytogenes HPB2262] gi|300514527|gb|EFK41584.1| hypothetical protein LMHG_12882 [Listeria monocytogenes FSL N1-017] Length = 211 Score = 44.7 bits (104), Expect = 0.041, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 A L ++ GIG + +++ + + + + E L ++ GI +K K+ + Sbjct: 155 ATKDDLQQVPGIGESKATAIIEY-REKEGLFQ-TIEDLKNVSGIGEKTVEKLKEYL 208 Score = 39.3 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 7/32 (21%), Positives = 16/32 (50%), Gaps = 1/32 (3%) Query: 576 GTVK-MISRSSPETLASIEGISKKIACKIYNH 606 G+ K ++ ++ + L + GI + A I + Sbjct: 146 GSAKINLNSATKDDLQQVPGIGESKATAIIEY 177 >gi|319957670|ref|YP_004168933.1| helix-hairpin-helix motif protein [Nitratifractor salsuginis DSM 16511] gi|319420074|gb|ADV47184.1| helix-hairpin-helix motif protein [Nitratifractor salsuginis DSM 16511] Length = 181 Score = 44.7 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 11/67 (16%) Query: 552 AAYSPLDEINGIGPLRKRLLLQ----SFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 A+ L I GIGP++ +L+ I E L ++GI +IA +Y + Sbjct: 23 ASKEELMSIKGIGPVKAAAILKCRRTH-----TIRN--REDLMKVQGIGPEIAENVYKNV 75 Query: 608 HKNTSHT 614 T Sbjct: 76 KAKAPGT 82 >gi|296119554|ref|ZP_06838112.1| DNA ligase, NAD-dependent [Corynebacterium ammoniagenes DSM 20306] gi|295967437|gb|EFG80704.1| DNA ligase, NAD-dependent [Corynebacterium ammoniagenes DSM 20306] Length = 700 Score = 44.7 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 21/49 (42%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R + +G++ + E +A +G+ IA + F Sbjct: 530 SIRHVGPTAARAIASRYGSLDAARSADVEDIAETDGVGLVIAESFKDWF 578 >gi|295399379|ref|ZP_06809361.1| DNA repair protein RadC [Geobacillus thermoglucosidasius C56-YS93] gi|312110061|ref|YP_003988377.1| DNA repair protein RadC [Geobacillus sp. Y4.1MC1] gi|294978845|gb|EFG54441.1| DNA repair protein RadC [Geobacillus thermoglucosidasius C56-YS93] gi|311215162|gb|ADP73766.1| DNA repair protein RadC [Geobacillus sp. Y4.1MC1] Length = 226 Score = 44.7 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 20/38 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 LLQ F ++++ +S E + SI+GI A +I Sbjct: 51 RLLQHFEGLRLLKDASIEEITSIKGIGTTKAVQILAAI 88 >gi|258513611|ref|YP_003189833.1| DNA integrity scanning protein DisA [Desulfotomaculum acetoxidans DSM 771] gi|257777316|gb|ACV61210.1| protein of unknown function DUF147 [Desulfotomaculum acetoxidans DSM 771] Length = 359 Score = 44.7 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 19/40 (47%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L+Q FGT+ + ++ E L +EGI + A I Sbjct: 306 IENLVQRFGTLSKVLVATIEELDEVEGIGEVRARSIKKGL 345 >gi|254166602|ref|ZP_04873456.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei T469] gi|254168555|ref|ZP_04875399.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei T469] gi|289596107|ref|YP_003482803.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei T469] gi|197622610|gb|EDY35181.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei T469] gi|197624212|gb|EDY36773.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei T469] gi|289533894|gb|ADD08241.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei T469] Length = 324 Score = 44.7 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKI 603 L+++ G+GP L ++ + + ++ +SP+ LA GI + +A KI Sbjct: 16 LEDLPGVGPTTAEKLREAGYTDLIELAVASPKDLADTVGIGEGVAQKI 63 >gi|104773853|ref|YP_618833.1| competence protein ComEA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116513860|ref|YP_812766.1| DNA uptake protein related DNA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103422934|emb|CAI97596.1| Competence protein ComEA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093175|gb|ABJ58328.1| DNA uptake protein related DNA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125517|gb|ADY84847.1| Competence protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 248 Score = 44.7 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 8/59 (13%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607 A S L ++NGIG + ++ G+ K S + L + GI K I + Sbjct: 193 ATASDLQKLNGIGEKKAEQIIAYRQEKGSFK-----SIDELKEVSGIGDKTFAAIKDQL 246 >gi|312880304|ref|ZP_07740104.1| DNA ligase, NAD-dependent [Aminomonas paucivorans DSM 12260] gi|310783595|gb|EFQ23993.1| DNA ligase, NAD-dependent [Aminomonas paucivorans DSM 12260] Length = 696 Score = 44.7 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 23/50 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I +G L FG+++ + S E LA++EG+ +A + F Sbjct: 521 GIRNVGDRLAADLAGRFGSLEALEACSEEALAAVEGVGPVVAAAVRAFFR 570 >gi|254882009|ref|ZP_05254719.1| polydeoxyribonucleotide synthase [Bacteroides sp. 4_3_47FAA] gi|254834802|gb|EET15111.1| polydeoxyribonucleotide synthase [Bacteroides sp. 4_3_47FAA] Length = 665 Score = 44.7 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 25/45 (55%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + + +SF ++ ++ +S + L ++ I +KIA I +F Sbjct: 515 VGETVAKKVAKSFKSMDALADASLDNLIHVDEIGEKIAQSILLYF 559 >gi|227432395|ref|ZP_03914385.1| crossover junction endoribonuclease subunit A [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351834|gb|EEJ42070.1| crossover junction endoribonuclease subunit A [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 196 Score = 44.7 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 5/57 (8%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603 KA ++ L ++GIGP +L + G + + + L G+ KK A +I Sbjct: 67 KALFNKLLNVSGIGPKSALAILAN-GDAEGLISAVENDNVAYLTQFPGVGKKTAQQI 122 >gi|116617732|ref|YP_818103.1| Holliday junction resolvasome, DNA-binding subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122272067|sp|Q03YJ2|RUVA_LEUMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116096579|gb|ABJ61730.1| Holliday junction DNA helicase subunit RuvA [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 196 Score = 44.7 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 5/57 (8%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603 KA ++ L ++GIGP +L + G + + + L G+ KK A +I Sbjct: 67 KALFNKLLNVSGIGPKSALAILAN-GDAEGLISAVENDNVAYLTQFPGVGKKTAQQI 122 >gi|297578580|ref|ZP_06940508.1| DNA ligase [Vibrio cholerae RC385] gi|297536174|gb|EFH75007.1| DNA ligase [Vibrio cholerae RC385] Length = 669 Score = 44.7 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 22/52 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L Q F +++ I ++S E + + +A + F ++ + Sbjct: 520 VGEATALNLAQHFLSLEAIQQASLEQFIEVPDVGVVVASHLQAFFAQDRNQQ 571 >gi|229523238|ref|ZP_04412645.1| DNA ligase [Vibrio cholerae TM 11079-80] gi|229339601|gb|EEO04616.1| DNA ligase [Vibrio cholerae TM 11079-80] Length = 669 Score = 44.7 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 22/52 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L Q F +++ I ++S E + + +A + F ++ + Sbjct: 520 VGEATALNLAQHFLSLEAIQQASLEQFIEVPDVGVVVASHLQAFFAQDRNQQ 571 >gi|229529935|ref|ZP_04419325.1| DNA ligase [Vibrio cholerae 12129(1)] gi|229333709|gb|EEN99195.1| DNA ligase [Vibrio cholerae 12129(1)] gi|327483693|gb|AEA78100.1| DNA ligase [Vibrio cholerae LMA3894-4] Length = 669 Score = 44.7 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 22/52 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L Q F +++ I ++S E + + +A + F ++ + Sbjct: 520 VGEATALNLAQHFLSLEAIQQASLEQFIEVPDVGVVVASHLQAFFAQDRNQQ 571 >gi|183179445|ref|ZP_02957656.1| DNA ligase [Vibrio cholerae MZO-3] gi|183012856|gb|EDT88156.1| DNA ligase [Vibrio cholerae MZO-3] Length = 669 Score = 44.7 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 22/52 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L Q F +++ I ++S E + + +A + F ++ + Sbjct: 520 VGEATALNLAQHFLSLEAIQQASLEQFIEVPDVGVVVASHLQAFFAQDRNQQ 571 >gi|153217073|ref|ZP_01950837.1| DNA ligase [Vibrio cholerae 1587] gi|124113903|gb|EAY32723.1| DNA ligase [Vibrio cholerae 1587] Length = 324 Score = 44.7 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 22/52 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L Q F +++ I ++S E + + +A + F ++ + Sbjct: 175 VGEATALNLAQHFLSLEAIQQASLEQFIEVPDVGVVVASHLQAFFAQDRNQQ 226 >gi|32266816|ref|NP_860848.1| DNA polymerase I [Helicobacter hepaticus ATCC 51449] gi|32262868|gb|AAP77914.1| DNA polymerase I [Helicobacter hepaticus ATCC 51449] Length = 912 Score = 44.7 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 3/47 (6%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 I GIG + L+ FG+++ + L + ++ +IA + Sbjct: 187 GIKGIGAKSAQKLITHFGSIESLYE-RESELEEV--VTPRIAHLLRE 230 >gi|254226208|ref|ZP_04919802.1| DNA ligase [Vibrio cholerae V51] gi|125621244|gb|EAZ49584.1| DNA ligase [Vibrio cholerae V51] Length = 669 Score = 44.7 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 22/52 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L Q F +++ I ++S E + + +A + F ++ + Sbjct: 520 VGEATALNLAQHFLSLEAIQQASLEQFIEVPDVGVVVASHLQAFFAQDRNQQ 571 >gi|15640987|ref|NP_230618.1| NAD-dependent DNA ligase LigA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153822692|ref|ZP_01975359.1| DNA ligase [Vibrio cholerae B33] gi|229510900|ref|ZP_04400379.1| DNA ligase [Vibrio cholerae B33] gi|229518021|ref|ZP_04407465.1| DNA ligase [Vibrio cholerae RC9] gi|229608449|ref|YP_002879097.1| NAD-dependent DNA ligase LigA [Vibrio cholerae MJ-1236] gi|254291846|ref|ZP_04962629.1| DNA ligase [Vibrio cholerae AM-19226] gi|254848101|ref|ZP_05237451.1| NAD-dependent DNA ligase LigA [Vibrio cholerae MO10] gi|255744753|ref|ZP_05418704.1| DNA ligase [Vibrio cholera CIRS 101] gi|262151242|ref|ZP_06028378.1| DNA ligase [Vibrio cholerae INDRE 91/1] gi|81545212|sp|Q9KTD1|DNLJ_VIBCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|9655431|gb|AAF94133.1| DNA ligase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126519773|gb|EAZ76996.1| DNA ligase [Vibrio cholerae B33] gi|150422206|gb|EDN14170.1| DNA ligase [Vibrio cholerae AM-19226] gi|229344736|gb|EEO09710.1| DNA ligase [Vibrio cholerae RC9] gi|229350865|gb|EEO15806.1| DNA ligase [Vibrio cholerae B33] gi|229371104|gb|ACQ61527.1| DNA ligase [Vibrio cholerae MJ-1236] gi|254843806|gb|EET22220.1| NAD-dependent DNA ligase LigA [Vibrio cholerae MO10] gi|255737784|gb|EET93178.1| DNA ligase [Vibrio cholera CIRS 101] gi|262030933|gb|EEY49561.1| DNA ligase [Vibrio cholerae INDRE 91/1] Length = 669 Score = 44.7 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 22/52 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L Q F +++ I ++S E + + +A + F ++ + Sbjct: 520 VGEATALNLAQHFLSLEAIQQASLEQFIEVPDVGVVVASHLQAFFAQDRNQQ 571 >gi|226945096|ref|YP_002800169.1| NAD-dependent DNA ligase LigA [Azotobacter vinelandii DJ] gi|254781546|sp|C1DN27|DNLJ_AZOVD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|226720023|gb|ACO79194.1| DNA ligase, NAD-dependent [Azotobacter vinelandii DJ] Length = 784 Score = 44.7 bits (104), Expect = 0.043, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 26/52 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +G + L ++ G++ I ++ PE L + + ++A +I++ F Sbjct: 532 GIPDVGEETAKRLARALGSLTRIEKALPEVLIWLPDVGLEVAHEIHSFFRDE 583 >gi|184201557|ref|YP_001855764.1| DNA integrity scanning protein DisA [Kocuria rhizophila DC2201] gi|183581787|dbj|BAG30258.1| hypothetical protein [Kocuria rhizophila DC2201] Length = 357 Score = 44.7 bits (104), Expect = 0.043, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 6/54 (11%) Query: 557 LDEI---NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L+ I G + L+ F ++ + ++ E L S+EGI ++ A + Sbjct: 294 LEGIKSMPG---AVAKRLVAQFDGLQSLMAANLEDLMSVEGIGEQRARTVRESL 344 >gi|302670775|ref|YP_003830735.1| NAD-dependent DNA ligase LigA1 [Butyrivibrio proteoclasticus B316] gi|302395248|gb|ADL34153.1| NAD-dependent DNA ligase LigA1 [Butyrivibrio proteoclasticus B316] Length = 675 Score = 44.7 bits (104), Expect = 0.043, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 22/51 (43%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +G R +++ F + +++ + E I I + A +Y FH Sbjct: 525 IRNVGKSTAREIMKHFDDLMELTKVTREGFLQIPDIGETTANDLYEFFHDE 575 >gi|294776463|ref|ZP_06741938.1| DNA ligase (NAD(+)) [Bacteroides vulgatus PC510] gi|294449660|gb|EFG18185.1| DNA ligase (NAD(+)) [Bacteroides vulgatus PC510] Length = 665 Score = 44.7 bits (104), Expect = 0.043, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 25/45 (55%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + + +SF ++ ++ +S + L ++ I +KIA I +F Sbjct: 515 VGETVAKKVAKSFKSMDALADASLDNLIHVDEIGEKIAQSILLYF 559 >gi|304316608|ref|YP_003851753.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778110|gb|ADL68669.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 205 Score = 44.7 bits (104), Expect = 0.043, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 10/59 (16%) Query: 551 KAAYSPLDEINGIGPLRKRLLL----QSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 KA LD + GIG + + ++ Q G + I E + ++ I K+ +I + Sbjct: 148 KATKEELDTLPGIGEVTAQRIIDFREQH-GNFQKI-----EDIMNVSRIGPKLFEQIKD 200 >gi|220930937|ref|YP_002507845.1| predicted nucleic-acid-binding protein (contains the HHH domain) [Halothermothrix orenii H 168] gi|219992247|gb|ACL68850.1| predicted nucleic-acid-binding protein (contains the HHH domain) [Halothermothrix orenii H 168] Length = 359 Score = 44.7 bits (104), Expect = 0.043, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 21/40 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L+ FG+++ + + P+ L ++G+ + A I + + Sbjct: 309 NLVGHFGSLQKVLNAFPDELDDVDGVGEVRAKAIKDGLRR 348 >gi|150005810|ref|YP_001300554.1| DNA ligase [Bacteroides vulgatus ATCC 8482] gi|237725408|ref|ZP_04555889.1| DNA ligase [Bacteroides sp. D4] gi|319640984|ref|ZP_07995691.1| DNA ligase [Bacteroides sp. 3_1_40A] gi|166215396|sp|A6L5G8|DNLJ_BACV8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|149934234|gb|ABR40932.1| DNA ligase [Bacteroides vulgatus ATCC 8482] gi|229436095|gb|EEO46172.1| DNA ligase [Bacteroides dorei 5_1_36/D4] gi|317387362|gb|EFV68234.1| DNA ligase [Bacteroides sp. 3_1_40A] Length = 665 Score = 44.7 bits (104), Expect = 0.043, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 25/45 (55%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + + +SF ++ ++ +S + L ++ I +KIA I +F Sbjct: 515 VGETVAKKVAKSFKSMDALADASLDNLIHVDEIGEKIAQSILLYF 559 >gi|315303231|ref|ZP_07873880.1| ComE operon protein 1 [Listeria ivanovii FSL F6-596] gi|313628401|gb|EFR96885.1| ComE operon protein 1 [Listeria ivanovii FSL F6-596] Length = 202 Score = 44.7 bits (104), Expect = 0.044, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 A+ S L + GIG + +++ + + + + E L ++ GI +K K+ + Sbjct: 146 ASTSNLQTVPGIGESKATAIIEY-REKEGLFQ-TIEDLQNVTGIGEKTIEKLKEYL 199 >gi|302875860|ref|YP_003844493.1| helicase, RecD/TraA family [Clostridium cellulovorans 743B] gi|307689293|ref|ZP_07631739.1| helicase, RecD/TraA family protein [Clostridium cellulovorans 743B] gi|302578717|gb|ADL52729.1| helicase, RecD/TraA family [Clostridium cellulovorans 743B] Length = 737 Score = 44.7 bits (104), Expect = 0.044, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Query: 560 INGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNHF 607 + GIGP+ R ++Q FG I E L IEGI K I F Sbjct: 88 VQGIGPVTARKIVQHFGNDALRIMEEDIERLKEIEGIGAKKIKVIAESF 136 >gi|148284229|ref|YP_001248319.1| helicase RecD/TraA, ATP-dependent exoDNAse (exonuclease V) [Orientia tsutsugamushi str. Boryong] gi|146739668|emb|CAM79461.1| Helicase RecD/TraA, ATP-dependent exoDNAse (exonuclease V) [Orientia tsutsugamushi str. Boryong] Length = 731 Score = 44.7 bits (104), Expect = 0.044, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 5/60 (8%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFH 608 K S L I GIGP+ + L+Q+FG + +I P L + GI A KI+ ++ Sbjct: 97 KYLASGL--IKGIGPIYAKKLVQTFGLDVLTVIENQDPA-LKKVPGIGPIRAKKIWESWN 153 >gi|327475237|gb|AEA77213.1| DNA ligase [Bacillus aquimaris] Length = 668 Score = 44.7 bits (104), Expect = 0.044, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 22/49 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 +G + L Q F +++ + S + L I I +K+A I +F Sbjct: 515 VGAKAAKTLAQQFHSMEKLMTVSKDELTDINEIGEKMAAAIVAYFDNEE 563 >gi|304315504|ref|YP_003850651.1| DNA repair and recombination protein RadA [Methanothermobacter marburgensis str. Marburg] gi|302588963|gb|ADL59338.1| DNA repair and recombination protein RadA [Methanothermobacter marburgensis str. Marburg] Length = 311 Score = 44.7 bits (104), Expect = 0.044, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606 L+++ +G + L + FG + ++ ++ + L+ I + +A K+ Sbjct: 3 ELEDLPNVGAKTAQKLRDAGFGDMMRLATATAKELSVKAEIGEGVAEKVIEA 54 >gi|15679382|ref|NP_276499.1| DNA repair and recombination protein RadA [Methanothermobacter thermautotrophicus str. Delta H] gi|3914551|sp|O27436|RADA_METTH RecName: Full=DNA repair and recombination protein radA gi|2622493|gb|AAB85860.1| DNA repair protein RadA [Methanothermobacter thermautotrophicus str. Delta H] Length = 311 Score = 44.7 bits (104), Expect = 0.044, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606 L+++ +G + L + FG + ++ ++ + L+ I + +A K+ Sbjct: 3 ELEDLPNVGAKTAQKLRDAGFGDMMRLATATAKELSVKAEIGEGVAEKVIEA 54 >gi|228473427|ref|ZP_04058180.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624] gi|228275034|gb|EEK13837.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624] Length = 931 Score = 44.7 bits (104), Expect = 0.044, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 13/61 (21%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPE---------TLASIEGI-SKKIACKIY 604 D I G +G + LL+ FG+++ + ++ + +GI SK +A I Sbjct: 190 DNIPGLPGVGEKTAQKLLKEFGSLENLLDNTDKLKGKLRENIEANKDKGILSKTLARIIL 249 Query: 605 N 605 + Sbjct: 250 D 250 >gi|117928414|ref|YP_872965.1| 5'-3' exonuclease [Acidothermus cellulolyticus 11B] gi|117648877|gb|ABK52979.1| 5'-3' exonuclease [Acidothermus cellulolyticus 11B] Length = 324 Score = 44.7 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 15/28 (53%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584 L I G+G LL++FG+V + + Sbjct: 209 LPGIPGVGEKTAARLLRTFGSVDALLAA 236 >gi|332363474|gb|EGJ41257.1| competence protein CelA [Streptococcus sanguinis SK355] Length = 226 Score = 44.7 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 A + L I+GIG R ++ + S + L + GI K K+ + Sbjct: 170 ATEAELQTISGIGQKRASDIIAYRESSGRFK--SVDDLKKVSGIGDKTLEKLKEY 222 >gi|325697125|gb|EGD39012.1| competence protein CelA [Streptococcus sanguinis SK160] Length = 239 Score = 44.7 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 A + L I+GIG R ++ + S + L + GI K K+ + Sbjct: 183 ATEAELQTISGIGQKRASDIIAYRESSGRFK--SVDDLKKVSGIGDKTLEKLKEY 235 >gi|324993349|gb|EGC25269.1| competence protein CelA [Streptococcus sanguinis SK405] gi|324995340|gb|EGC27252.1| competence protein CelA [Streptococcus sanguinis SK678] gi|327473342|gb|EGF18762.1| competence protein CelA [Streptococcus sanguinis SK408] gi|327489479|gb|EGF21272.1| competence protein CelA [Streptococcus sanguinis SK1058] Length = 243 Score = 44.7 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 A + L I+GIG R ++ + S + L + GI K K+ + Sbjct: 187 ATEAELQTISGIGQKRASDIIAYRESSGRFK--SVDDLKKVSGIGDKTLEKLKEY 239 >gi|308071012|ref|YP_003872617.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Paenibacillus polymyxa E681] gi|305860291|gb|ADM72079.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Paenibacillus polymyxa E681] Length = 680 Score = 44.7 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 2/63 (3%) Query: 547 KRRKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K + + S L I G R+L + + + ++ E L + + +A I Sbjct: 509 KSKDRDLASFLYALGIPNTGKATTRMLAEHYRDLHKTMSATVEELIELPDVGGIVAESIV 568 Query: 605 NHF 607 F Sbjct: 569 AFF 571 >gi|304440231|ref|ZP_07400121.1| crossover junction ATP-dependent DNA helicase RuvA [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371280|gb|EFM24896.1| crossover junction ATP-dependent DNA helicase RuvA [Peptoniphilus duerdenii ATCC BAA-1640] Length = 193 Score = 44.7 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 3/60 (5%) Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIACKI 603 +R+++ +S L ++GIGP ++ +G K I S ++L G+ KK A +I Sbjct: 64 SKRERSIFSLLTMVSGIGPKVAMGIMGMYGEEELRKYILSSDVKSLTKAPGVGKKTAERI 123 >gi|226224085|ref|YP_002758192.1| integral membrane protein ComEA [Listeria monocytogenes Clip81459] gi|254992214|ref|ZP_05274404.1| ComEA family DNA-binding protein [Listeria monocytogenes FSL J2-064] gi|255520858|ref|ZP_05388095.1| ComEA family DNA-binding protein [Listeria monocytogenes FSL J1-175] gi|225876547|emb|CAS05256.1| Putative integral membrane protein ComEA [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|328465525|gb|EGF36754.1| ComEA family DNA-binding protein [Listeria monocytogenes 1816] gi|332311926|gb|EGJ25021.1| DNA-binding protein, ComEA family [Listeria monocytogenes str. Scott A] Length = 200 Score = 44.7 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 A L ++ GIG + +++ + + + + E L ++ GI +K K+ + Sbjct: 144 ATKDDLQQVPGIGESKATAIIEY-REKEGLFQ-TIEDLKNVSGIGEKTVEKLKEYL 197 Score = 38.9 bits (89), Expect = 2.3, Method: Composition-based stats. Identities = 7/32 (21%), Positives = 16/32 (50%), Gaps = 1/32 (3%) Query: 576 GTVK-MISRSSPETLASIEGISKKIACKIYNH 606 G+ K ++ ++ + L + GI + A I + Sbjct: 135 GSAKINLNSATKDDLQQVPGIGESKATAIIEY 166 >gi|189182988|ref|YP_001936773.1| exodeoxyribonuclease V alpha subunit [Orientia tsutsugamushi str. Ikeda] gi|189179759|dbj|BAG39539.1| exodeoxyribonuclease V alpha subunit [Orientia tsutsugamushi str. Ikeda] Length = 731 Score = 44.7 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 5/60 (8%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFH 608 K S L I GIGP+ + L+Q+FG + +I P L + GI A KI+ ++ Sbjct: 97 KYLASGL--IKGIGPIYAKKLVQTFGLDVLTVIENQDPA-LKKVPGIGPIRAKKIWESWN 153 >gi|120602570|ref|YP_966970.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris DP4] gi|166215379|sp|A1VDM7|DNLJ2_DESVV RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 2 gi|120562799|gb|ABM28543.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris DP4] Length = 797 Score = 44.7 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 21/54 (38%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G R L +F + + + ETL + I ++A I F + Sbjct: 553 GIRHVGEQTARTLAANFTDLDALREADAETLQQLPDIGPEVAGSIRTFFANEGN 606 >gi|90021526|ref|YP_527353.1| DNA ligase (NAD+) [Saccharophagus degradans 2-40] gi|123090491|sp|Q21JI8|DNLJ_SACD2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|89951126|gb|ABD81141.1| DNA ligase, NAD-dependent [Saccharophagus degradans 2-40] Length = 674 Score = 44.7 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 6/62 (9%) Query: 552 AAYSPLDEIN---GI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 + + LD+I GI G R L F T+ + ++ E L + + +A + + Sbjct: 506 SKQTSLDKILYALGIREVGRATARNLANHFCTLNKVMDATQEQLIEVTDVGPVVAHYVVD 565 Query: 606 HF 607 F Sbjct: 566 FF 567 >gi|328872280|gb|EGG20647.1| hypothetical protein DFA_00508 [Dictyostelium fasciculatum] Length = 211 Score = 44.7 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 548 RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + K+ L I I + +LLLQ F T++ IS +S + L G IY+ F Sbjct: 148 LQNKSIK-ALLSIPNIKIDQCKLLLQKFETIERISIASIDELNLKTGFDSSFNQMIYDFF 206 Query: 608 HKN 610 K+ Sbjct: 207 RKD 209 >gi|302338526|ref|YP_003803732.1| Holliday junction DNA helicase RuvA [Spirochaeta smaragdinae DSM 11293] gi|301635711|gb|ADK81138.1| Holliday junction DNA helicase RuvA [Spirochaeta smaragdinae DSM 11293] Length = 202 Score = 44.7 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 20/97 (20%) Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLL---- 572 + L R+ + FA ++++ + L +++GIGP + +L Sbjct: 48 PVHLIHREDAMLLFA--------FA-----SKKERNLFRELLKVSGIGPKQAVRILSGME 94 Query: 573 -QSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 F + + + L+SI G+ KK A KI Sbjct: 95 ADRF--IAALENEDVDLLSSIPGVGKKSAGKIILALR 129 >gi|295093347|emb|CBK82438.1| DNA ligase, NAD-dependent [Coprococcus sp. ART55/1] Length = 678 Score = 44.7 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 1/55 (1%) Query: 559 EINGIGPLRKRLLLQSF-GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G +L+ + F + + ++ I+GI + IA I +F + Sbjct: 524 GIANVGEATAKLMAKHFANDMDAMKKADVSAYVEIDGIGQVIAEDIVRYFENEKN 578 >gi|163816857|ref|ZP_02208220.1| hypothetical protein COPEUT_03048 [Coprococcus eutactus ATCC 27759] gi|158448114|gb|EDP25109.1| hypothetical protein COPEUT_03048 [Coprococcus eutactus ATCC 27759] Length = 678 Score = 44.7 bits (104), Expect = 0.046, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 1/55 (1%) Query: 559 EINGIGPLRKRLLLQSF-GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G +L+ + F + + ++ I+GI + IA I +F + Sbjct: 524 GIANVGEATAKLMAKHFANDMDAMKKADVSAYVEIDGIGQVIAEDIVRYFENEKN 578 >gi|298368340|ref|ZP_06979658.1| DNA topoisomerase [Neisseria sp. oral taxon 014 str. F0314] gi|298282343|gb|EFI23830.1| DNA topoisomerase [Neisseria sp. oral taxon 014 str. F0314] Length = 96 Score = 44.7 bits (104), Expect = 0.046, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 18/70 (25%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L+ + GIGP + + ++ F + E L ++GI I++ Sbjct: 26 ATAAELEALPGIGPAKAKAIVAYRQQNGQFK--------TVEDLKKVKGIG----EGIFS 73 Query: 606 HFHKNTSHTP 615 S P Sbjct: 74 KLKDEASVAP 83 >gi|255527259|ref|ZP_05394140.1| protein of unknown function DUF147 [Clostridium carboxidivorans P7] gi|296187238|ref|ZP_06855634.1| putative DNA integrity scanning protein [Clostridium carboxidivorans P7] gi|255509044|gb|EET85403.1| protein of unknown function DUF147 [Clostridium carboxidivorans P7] gi|296048109|gb|EFG87547.1| putative DNA integrity scanning protein [Clostridium carboxidivorans P7] Length = 357 Score = 44.7 bits (104), Expect = 0.046, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L++I I L+++F +K +S E L +EGI + A I N + Sbjct: 291 LNKIPRIPTNVIENLVKNFKELKGAMEASYEQLDKVEGIGEARARAIKNGLRR 343 >gi|153005315|ref|YP_001379640.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5] gi|152028888|gb|ABS26656.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5] Length = 899 Score = 44.7 bits (104), Expect = 0.046, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE--GISKKIACKI 603 I GIG + L++ FGTV+ + R PE + + G +K+ KI Sbjct: 192 GIPGIGEVTAAALVRHFGTVEEMLR-RPEEIKAALSRG-GEKVKEKI 236 >gi|300811335|ref|ZP_07091832.1| comEA protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497699|gb|EFK32724.1| comEA protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 250 Score = 44.7 bits (104), Expect = 0.047, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 8/59 (13%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607 A S L ++NGIG + ++ G+ K S + L + GI K I + Sbjct: 195 ATASDLQKLNGIGEKKAEQIIAYRQEKGSFK-----SIDELKEVSGIGDKTFAAIKDQL 248 >gi|168034367|ref|XP_001769684.1| predicted protein [Physcomitrella patens subsp. patens] gi|162679033|gb|EDQ65485.1| predicted protein [Physcomitrella patens subsp. patens] Length = 285 Score = 44.7 bits (104), Expect = 0.047, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 20/35 (57%) Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 F T+ I +S E LA GI ++ ++Y+ FH+ Sbjct: 245 FETLTGIFSASMEDLARCPGIGERKVKRLYDAFHE 279 >gi|73536054|pdb|2A1J|A Chain A, Crystal Structure Of The Complex Between The C-Terminal Domains Of Human Xpf And Ercc1 Length = 63 Score = 44.7 bits (104), Expect = 0.047, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 L ++ G+ R L+ + ++ S + L SI G + A ++Y+ H + + Sbjct: 6 LLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYDFIHTSFAE 61 >gi|332981862|ref|YP_004463303.1| competence protein ComEA helix-hairpin-helix repeat protein [Mahella australiensis 50-1 BON] gi|332699540|gb|AEE96481.1| competence protein ComEA helix-hairpin-helix repeat protein [Mahella australiensis 50-1 BON] Length = 212 Score = 44.7 bits (104), Expect = 0.047, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 LD++ GIGP + + ++ F + + + + GI I + Sbjct: 160 ELDKLPGIGPAKAQKIIDYREQNGPFKAI--------DDIQQVSGIGPATFENIKD 207 Score = 40.9 bits (94), Expect = 0.61, Method: Composition-based stats. Identities = 8/26 (30%), Positives = 14/26 (53%) Query: 581 ISRSSPETLASIEGISKKIACKIYNH 606 I+ ++ E L + GI A KI ++ Sbjct: 153 INSATIEELDKLPGIGPAKAQKIIDY 178 >gi|325684379|gb|EGD26548.1| competence protein ComEA [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 252 Score = 44.7 bits (104), Expect = 0.047, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 8/59 (13%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607 A S L ++NGIG + ++ G+ K S + L + GI K I + Sbjct: 197 ATASDLQKLNGIGEKKAEQIIAYRQEKGSFK-----SIDELKEVSGIGDKTFAAIKDQL 250 >gi|20092019|ref|NP_618094.1| ski2-like helicase [Methanosarcina acetivorans C2A] gi|24418451|sp|Q8TL39|HELS_METAC RecName: Full=Putative ski2-type helicase gi|19917229|gb|AAM06574.1| helicase [Methanosarcina acetivorans C2A] Length = 730 Score = 44.7 bits (104), Expect = 0.047, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 3/50 (6%) Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L +I GIG +R R L + F + ++ ++PE +A++ G KIA +I+ Sbjct: 652 LLDIRGIGRVRARKLYGAGFKSTADLAGATPEKVAALVG--PKIAERIFR 699 >gi|327461622|gb|EGF07953.1| competence protein CelA [Streptococcus sanguinis SK1] Length = 243 Score = 44.7 bits (104), Expect = 0.048, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 A + L I+GIG R ++ + S + L + GI K K+ + Sbjct: 187 ATEAELQTISGIGQKRASDIIAYRESSGRFK--SVDDLKKVSGIGDKTLEKLKEY 239 >gi|322385709|ref|ZP_08059353.1| NAD-dependent DNA ligase LigA [Streptococcus cristatus ATCC 51100] gi|321270447|gb|EFX53363.1| NAD-dependent DNA ligase LigA [Streptococcus cristatus ATCC 51100] Length = 652 Score = 44.7 bits (104), Expect = 0.048, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 31/55 (56%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G R+L++ F + +S++S E ++SI+ + IA ++++F + S Sbjct: 502 GIRHVGSKASRILMEKFHDMIKLSQASQEEISSIDSLGTVIAQSLHSYFEQEGSQ 556 Score = 39.3 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 559 EINGIGPLRKRLLLQS--FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I G+GP + V I R S E L +++G +K A K+YN + ++ Sbjct: 436 NITGLGPAVVEKVFDKNLVKDVAGIYRLSVEDLLTLDGFKEKSANKLYNAIQASKENS 493 >gi|300709641|ref|YP_003735455.1| DNA repair and recombination protein RadA [Halalkalicoccus jeotgali B3] gi|299123324|gb|ADJ13663.1| DNA repair and recombination protein RadA [Halalkalicoccus jeotgali B3] Length = 344 Score = 44.7 bits (104), Expect = 0.048, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 555 SPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606 S L+++ G+GP LL + + T ++ +SP L++ + + A I Sbjct: 5 SDLEDLPGVGPATAEKLLDNGYDTYTSLAVASPAELSNTADVGESSAGDIIRA 57 >gi|184154991|ref|YP_001843331.1| holliday junction DNA helicase RuvA [Lactobacillus fermentum IFO 3956] gi|227514529|ref|ZP_03944578.1| crossover junction endoribonuclease subunit A [Lactobacillus fermentum ATCC 14931] gi|260663386|ref|ZP_05864277.1| Holliday junction DNA helicase RuvA [Lactobacillus fermentum 28-3-CHN] gi|229560093|sp|B2GB19|RUVA_LACF3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|183226335|dbj|BAG26851.1| holliday junction DNA helicase RuvA [Lactobacillus fermentum IFO 3956] gi|227087086|gb|EEI22398.1| crossover junction endoribonuclease subunit A [Lactobacillus fermentum ATCC 14931] gi|260552238|gb|EEX25290.1| Holliday junction DNA helicase RuvA [Lactobacillus fermentum 28-3-CHN] Length = 200 Score = 44.7 bits (104), Expect = 0.048, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Query: 551 KAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKI 603 K ++ L ++GIGP +L G + I + L+ GI KK A +I Sbjct: 68 KRLFTQLIGVSGIGPKSALAILATPDHQGLIDAIQNGDDKYLSKFPGIGKKTASRI 123 >gi|89100729|ref|ZP_01173584.1| DNA-binding protein [Bacillus sp. NRRL B-14911] gi|89084546|gb|EAR63692.1| DNA-binding protein [Bacillus sp. NRRL B-14911] Length = 357 Score = 44.7 bits (104), Expect = 0.048, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 L++I + P+ L+ F + I+ +S E L +EGI + A KI Sbjct: 294 LNKIPRLPPIIIENLITRFQELPEITAASVEDLDEVEGIGEVRARKIREGLK 345 >gi|302389341|ref|YP_003825162.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermosediminibacter oceani DSM 16646] gi|302199969|gb|ADL07539.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermosediminibacter oceani DSM 16646] Length = 211 Score = 44.7 bits (104), Expect = 0.048, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 LD++ GIGP + ++ F +V E L ++ GI +K ++ + Sbjct: 159 ELDKLPGIGPALAQRIIDYRNQHGPFKSV--------EELKNVSGIGEKKFEELKD 206 Score = 40.9 bits (94), Expect = 0.73, Method: Composition-based stats. Identities = 7/33 (21%), Positives = 17/33 (51%) Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I+ + E L + GI +A +I ++ +++ Sbjct: 151 NINTAGLEELDKLPGIGPALAQRIIDYRNQHGP 183 >gi|242095058|ref|XP_002438019.1| hypothetical protein SORBIDRAFT_10g006566 [Sorghum bicolor] gi|241916242|gb|EER89386.1| hypothetical protein SORBIDRAFT_10g006566 [Sorghum bicolor] Length = 226 Score = 44.7 bits (104), Expect = 0.049, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 L I GI L Q+ G+++ I+++S E + +S + A +I+ F Sbjct: 163 VLTSIPGIDSHDANALAQAIGSIEAIAKASKEFILENTDLSTEKAERIFRFFR 215 >gi|197336238|ref|YP_002156719.1| DNA ligase, NAD-dependent [Vibrio fischeri MJ11] gi|254781450|sp|B5FGU7|DNLJ_VIBFM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|197317728|gb|ACH67175.1| DNA ligase, NAD-dependent [Vibrio fischeri MJ11] Length = 668 Score = 44.7 bits (104), Expect = 0.049, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 22/52 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L F T++ I ++ E L + + +A + N F + + T Sbjct: 519 VGEATAANLAAHFYTLEAIQVATFEQLIEVSDVGDIVAKHVLNFFAEPHNKT 570 >gi|218440245|ref|YP_002378574.1| DNA protecting protein DprA [Cyanothece sp. PCC 7424] gi|218172973|gb|ACK71706.1| DNA protecting protein DprA [Cyanothece sp. PCC 7424] Length = 374 Score = 44.7 bits (104), Expect = 0.049, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK----KIACK 602 +I+GIGP+ + + Q F T++ ++S L +EG+ K IA K Sbjct: 13 QISGIGPVLLKRIHQHFKTLEGAWKASTTDLKMVEGLGKQLLSAIAEK 60 >gi|147677151|ref|YP_001211366.1| DNA repair proteins [Pelotomaculum thermopropionicum SI] gi|146273248|dbj|BAF58997.1| DNA repair proteins [Pelotomaculum thermopropionicum SI] Length = 196 Score = 44.7 bits (104), Expect = 0.049, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 12/74 (16%) Query: 546 RKRRKKAAYSPLDEIN------GIGPLRKRLL------LQSFGTVKMISRSSPETLASIE 593 R+R KA L EI G G L + FG+++++ ++ E L+ ++ Sbjct: 20 RERLLKAGAGVLSEIELLAILLGTGSREATALELASQIMARFGSLRLLVDATVEELSEVK 79 Query: 594 GISKKIACKIYNHF 607 G+ A ++ Sbjct: 80 GVGLAKASQVKAAL 93 >gi|114776845|ref|ZP_01451888.1| DNA ligase, NAD-dependent [Mariprofundus ferrooxydans PV-1] gi|114552931|gb|EAU55362.1| DNA ligase, NAD-dependent [Mariprofundus ferrooxydans PV-1] Length = 670 Score = 44.7 bits (104), Expect = 0.049, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 23/51 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G L F ++++ ++ E L ++ + ++A I + F + Sbjct: 517 GIRHVGSATAAALATHFADLELLMQADEEALLAVPDVGPEVAGSILSFFRE 567 >gi|59712497|ref|YP_205273.1| NAD-dependent DNA ligase LigA [Vibrio fischeri ES114] gi|75353581|sp|Q5E3L1|DNLJ_VIBF1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|59480598|gb|AAW86385.1| DNA ligase, NAD(+)-dependent [Vibrio fischeri ES114] Length = 668 Score = 44.7 bits (104), Expect = 0.049, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 22/52 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L F T++ I ++ E L + + +A + N F + + T Sbjct: 519 VGEATAANLAAHFYTLEAIQVATFEQLIEVSDVGDIVAKHVLNFFAEPHNKT 570 >gi|297570387|ref|YP_003691731.1| DNA ligase, NAD-dependent [Desulfurivibrio alkaliphilus AHT2] gi|296926302|gb|ADH87112.1| DNA ligase, NAD-dependent [Desulfurivibrio alkaliphilus AHT2] Length = 680 Score = 44.7 bits (104), Expect = 0.049, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 25/50 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I +G + ++L + F +++ + ++ E +EGI ++A + F Sbjct: 526 GIRHVGEVNAQVLARHFPSLEALQQAMEEDFLEVEGIGSQVAASLVTFFK 575 >gi|218442331|ref|YP_002380656.1| hypothetical protein PCC7424_5604 [Cyanothece sp. PCC 7424] gi|218175435|gb|ACK74163.1| hypothetical protein PCC7424_5604 [Cyanothece sp. PCC 7424] Length = 253 Score = 44.7 bits (104), Expect = 0.049, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIK-----SYMHSNNHTHRI 48 +++P P +Y + R+LY+GKA NLQKR Y + RI Sbjct: 54 QKLPPLPAIYFVFTPDKRLLYIGKADNLQKRWNNHYKYQYFLETSIDSRI 103 >gi|170059466|ref|XP_001865376.1| DNA excision repair protein ERCC-1 [Culex quinquefasciatus] gi|167878242|gb|EDS41625.1| DNA excision repair protein ERCC-1 [Culex quinquefasciatus] Length = 243 Score = 44.7 bits (104), Expect = 0.049, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 553 AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 S L I + L+Q++GT+ + SS E LA G + A K++ F+++ Sbjct: 182 MVSALTSIKPVNKTDAMTLMQNYGTLANMINSSEEKLAQCPGFGARKAKKLHKTFNES 239 >gi|331006918|ref|ZP_08330163.1| DNA polymerase I [gamma proteobacterium IMCC1989] gi|330419238|gb|EGG93659.1| DNA polymerase I [gamma proteobacterium IMCC1989] Length = 316 Score = 44.7 bits (104), Expect = 0.050, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 4/54 (7%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 D+I G IG LL+ +G+++ I S + L + + A +I + Sbjct: 201 DDIPGVPGIGAKTASALLKHYGSIE-IMLSQLDELLLSPPVGVRGAPRIVANLQ 253 >gi|32266013|ref|NP_860045.1| Holliday junction DNA helicase RuvA [Helicobacter hepaticus ATCC 51449] gi|44888424|sp|Q7VIU0|RUVA_HELHP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|32262062|gb|AAP77111.1| holliday junction DNA helicase RuvA [Helicobacter hepaticus ATCC 51449] Length = 196 Score = 44.7 bits (104), Expect = 0.050, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 7/58 (12%) Query: 551 KAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACKI 603 K + L +I+G+GP +L F K+I+ E L + GI K A KI Sbjct: 74 KQTFERLIKISGVGPKVAIAILSTYTPTHF--AKIIADKDIEALKKVPGIGVKGAAKI 129 >gi|260889570|ref|ZP_05900833.1| DNA ligase, NAD-dependent [Leptotrichia hofstadii F0254] gi|260860981|gb|EEX75481.1| DNA ligase, NAD-dependent [Leptotrichia hofstadii F0254] Length = 702 Score = 44.7 bits (104), Expect = 0.051, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 25/54 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G LL ++F ++ + S E L +++GI K+A + + + Sbjct: 546 GIPFVGKFNANLLTKTFKNIENLKNQSIENLLAVKGIGDKVAVAVNTFLNDEDN 599 >gi|322421682|ref|YP_004200905.1| DNA repair protein RadC [Geobacter sp. M18] gi|320128069|gb|ADW15629.1| DNA repair protein RadC [Geobacter sp. M18] Length = 231 Score = 44.7 bits (104), Expect = 0.051, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 8/54 (14%) Query: 554 YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 S LD +G R LL F ++++++ +S + ++GI A I Sbjct: 45 RSALD----LG----RELLLQFKSLRVLADASCREIQQVKGIGPAKATCILAAL 90 >gi|307352867|ref|YP_003893918.1| DNA repair and recombination protein RadA [Methanoplanus petrolearius DSM 11571] gi|307156100|gb|ADN35480.1| DNA repair and recombination protein RadA [Methanoplanus petrolearius DSM 11571] Length = 323 Score = 44.7 bits (104), Expect = 0.051, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACK 602 ++++ G+GP L ++ + T++ I+ +S LA I + A K Sbjct: 5 EIEDLPGVGPTTADKLREAGYSTIEGIATASYADLAEAAEIGESTAKK 52 >gi|294786921|ref|ZP_06752175.1| holliday junction DNA helicase RuvA [Parascardovia denticolens F0305] gi|315226557|ref|ZP_07868345.1| crossover junction ATP-dependent DNA helicase RuvA [Parascardovia denticolens DSM 10105] gi|294485754|gb|EFG33388.1| holliday junction DNA helicase RuvA [Parascardovia denticolens F0305] gi|315120689|gb|EFT83821.1| crossover junction ATP-dependent DNA helicase RuvA [Parascardovia denticolens DSM 10105] Length = 207 Score = 44.7 bits (104), Expect = 0.051, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKIYN 605 K ++ L +++G+GP +L + + + + ++ L G+ KK A KI Sbjct: 67 SKTLFTQLQKVSGVGPKAAMAILSTL-SPEELGKAIHDNDVTALTRAPGVGKKGAQKIIL 125 Query: 606 HFHKN 610 H + Sbjct: 126 ELHGS 130 >gi|288572814|ref|ZP_06391171.1| competence protein ComEA helix-hairpin-helix repeat protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568555|gb|EFC90112.1| competence protein ComEA helix-hairpin-helix repeat protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 229 Score = 44.7 bits (104), Expect = 0.051, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 14/54 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKI 603 L+ + GIGP +L F +V + L ++GI K + Sbjct: 177 ELETLPGIGPKTAAAILSYREKIGPFRSV--------DELTKVKGIGPKKLETV 222 >gi|217076174|ref|YP_002333890.1| hypothetical protein THA_41 [Thermosipho africanus TCF52B] gi|217036027|gb|ACJ74549.1| hypothetical protein THA_41 [Thermosipho africanus TCF52B] Length = 191 Score = 44.7 bits (104), Expect = 0.051, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 14/63 (22%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIY 604 KA L+++ GIGP + + +++ F ++ L ++ GI K KI Sbjct: 135 KADEKQLEKLPGIGPTKAKRIIEYREKNGKFNSLN--------ELLNVNGIGPKTLEKIK 186 Query: 605 NHF 607 N+ Sbjct: 187 NYL 189 Score = 38.9 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605 KA L + GIG ++ + ++ ++ S + L ++ GI KI + Sbjct: 58 KADLEQLMSLPGIGTVKAKAIISY-------RQAHGNFNSIDDLINVTGIGPSTLEKIRD 110 Query: 606 H 606 + Sbjct: 111 Y 111 >gi|163841905|ref|YP_001626310.1| DNA integrity scanning protein DisA [Renibacterium salmoninarum ATCC 33209] gi|162955381|gb|ABY24896.1| DNA-binding protein [Renibacterium salmoninarum ATCC 33209] Length = 358 Score = 44.7 bits (104), Expect = 0.051, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 20/38 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ F ++ + ++ E L ++EGI ++ A + Sbjct: 308 RLVEQFDGLQNLMAATIEDLMAVEGIGEQRARTVREGL 345 >gi|323481438|gb|ADX80877.1| competence protein ComEA helix-hairpin-helix repeat region domain protein [Enterococcus faecalis 62] Length = 214 Score = 44.7 bits (104), Expect = 0.051, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 157 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVDRLKD 208 Query: 606 HF 607 Sbjct: 209 ML 210 >gi|315150112|gb|EFT94128.1| comEA protein [Enterococcus faecalis TX0012] Length = 225 Score = 44.7 bits (104), Expect = 0.051, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVDRLKD 219 Query: 606 HF 607 Sbjct: 220 ML 221 >gi|5733399|gb|AAD49562.1|AF126866_1 NAD-dependent DNA ligase [Pseudoalteromonas haloplanktis] Length = 672 Score = 44.7 bits (104), Expect = 0.052, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 14/77 (18%) Query: 548 RRKKAAYSPLDEING-----------I---GPLRKRLLLQSFGTVKMISRSSPETLASIE 593 + K + L+E G I G + L F T++ + +S ++L + Sbjct: 491 KSAKNLVTALEEAKGTTLAKFLYSLGIREAGEATAQNLANHFLTLENVINASIDSLTQVS 550 Query: 594 GISKKIACKIYNHFHKN 610 + + +A + F + Sbjct: 551 DVGEIVAAHVRGFFDEE 567 >gi|78779378|ref|YP_397490.1| helix-hairpin-helix DNA-binding, class 1 [Prochlorococcus marinus str. MIT 9312] gi|78712877|gb|ABB50054.1| Helix-hairpin-helix DNA-binding, class 1 [Prochlorococcus marinus str. MIT 9312] Length = 106 Score = 44.7 bits (104), Expect = 0.052, Method: Composition-based stats. Identities = 8/44 (18%), Positives = 20/44 (45%), Gaps = 1/44 (2%) Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKI 599 L + G+G + L ++ F T+ + + L ++ G+ + Sbjct: 55 LTTLPGVGAKSAKALYEAGFKTINAVIEADENDLLAVSGVGINL 98 >gi|255034029|ref|YP_003084650.1| DNA protecting protein DprA [Dyadobacter fermentans DSM 18053] gi|254946785|gb|ACT91485.1| DNA protecting protein DprA [Dyadobacter fermentans DSM 18053] Length = 372 Score = 44.3 bits (103), Expect = 0.053, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 19/45 (42%) Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 GIG + R L+ G+ + S L I GI KI I N Sbjct: 19 PGIGAVTIRQLISYCGSASQVFESDYRKLIKIPGIGDKIVKAILN 63 >gi|254525711|ref|ZP_05137763.1| helix-hairpin-helix DNA-binding motif class 1 [Prochlorococcus marinus str. MIT 9202] gi|221537135|gb|EEE39588.1| helix-hairpin-helix DNA-binding motif class 1 [Prochlorococcus marinus str. MIT 9202] Length = 107 Score = 44.3 bits (103), Expect = 0.053, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Query: 550 KKAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKI 599 KK + L + G+G + L ++ F T K + + + L ++ G+ + Sbjct: 50 KKNIET-LTTLPGVGAKSAKALYEAGFKTTKAVIAADEKDLLAVSGVGINL 99 >gi|209695779|ref|YP_002263709.1| NAD-dependent DNA ligase LigA [Aliivibrio salmonicida LFI1238] gi|254781250|sp|B6EJQ6|DNLJ_ALISL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|208009732|emb|CAQ80037.1| NAD-dependent DNA ligase [Aliivibrio salmonicida LFI1238] Length = 669 Score = 44.3 bits (103), Expect = 0.053, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 3/66 (4%) Query: 547 KRRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 + K+ S I +G L F T+ IS ++ E L + + +A I Sbjct: 500 NKAKETTLSRFLYSLGIREVGEATAANLALHFQTLNAISSATFEQLIEVSDVGDIVAKHI 559 Query: 604 YNHFHK 609 F + Sbjct: 560 LGFFSE 565 >gi|157413434|ref|YP_001484300.1| helix-hairpin-helix DNA-binding motif-containing protein [Prochlorococcus marinus str. MIT 9215] gi|157388009|gb|ABV50714.1| Helix-hairpin-helix DNA-binding protein containing motif class 1 [Prochlorococcus marinus str. MIT 9215] Length = 114 Score = 44.3 bits (103), Expect = 0.053, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Query: 550 KKAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKI 599 KK + L + G+G + L ++ F T K + + + L ++ G+ + Sbjct: 57 KKNIET-LTTLPGVGAKSAKALYEAGFKTTKAVIAADEKDLLAVSGVGINL 106 >gi|126696407|ref|YP_001091293.1| helix-hairpin-helix DNA-binding motif-containing protein [Prochlorococcus marinus str. MIT 9301] gi|126543450|gb|ABO17692.1| Helix-hairpin-helix DNA-binding motif class 1 [Prochlorococcus marinus str. MIT 9301] Length = 109 Score = 44.3 bits (103), Expect = 0.053, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Query: 550 KKAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKI 599 KK + L + G+G + L ++ F T K + + + L ++ G+ + Sbjct: 52 KKNIET-LTTLPGVGAKSAKALYEAGFKTTKAVIAADEKDLLAVSGVGINL 101 >gi|14582732|gb|AAK69611.1|AF325828_1 unknown [Bacillus pumilus] Length = 389 Score = 44.3 bits (103), Expect = 0.053, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNH 606 PL+ I GIGP + L F T + ++ + E L ++ I +K++ I Sbjct: 319 PLEYIPGIGPKTLKKLKDHFKTEMDILHNVNSEALETV--IPQKLSQLILQA 368 >gi|327480472|gb|AEA83782.1| NAD-dependent DNA ligase LigA [Pseudomonas stutzeri DSM 4166] Length = 791 Score = 44.3 bits (103), Expect = 0.054, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Query: 557 LD--EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 LD I I + L + FG+++ I + L +E +++K A + ++F K+ + Sbjct: 625 LDRLNIPHIARTGAQRLAERFGSLEAIIAADWLDLRQVERLTEKAARSLRDYFDKSEN 682 Score = 42.8 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 29/56 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G +LL ++ G++ I R+ P+ L + + ++A +I++ F + T Sbjct: 538 GIPDVGEETAKLLARALGSLDRIGRALPDVLVYLPDVGLEVAHEIHSFFEDEHNRT 593 >gi|110667271|ref|YP_657082.1| hypothetical protein HQ1304A [Haloquadratum walsbyi DSM 16790] gi|109625018|emb|CAJ51433.1| conserved hypothetical protein [Haloquadratum walsbyi DSM 16790] Length = 214 Score = 44.3 bits (103), Expect = 0.054, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Query: 562 GIGPLRKRLL-LQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 G+G R R L ++ T+ I +S +A ++G ++ A + Sbjct: 122 GVGEKRLRKLEMERLVTLNDILDASINEIAEVDGFGEQTAKTLK 165 >gi|329725335|gb|EGG61818.1| comEA protein [Staphylococcus epidermidis VCU144] Length = 200 Score = 44.3 bits (103), Expect = 0.054, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A L I GIGP + + +L F ++ + L I+G KK K+ Sbjct: 145 ATEEQLKNIPGIGPSKAKEILNYREQNHGFNSI--------DDLMKIKGFGKKTFEKLKE 196 Query: 606 HF 607 HF Sbjct: 197 HF 198 >gi|330444148|ref|YP_004377134.1| DNA polymerase I [Chlamydophila pecorum E58] gi|328807258|gb|AEB41431.1| DNA polymerase I [Chlamydophila pecorum E58] Length = 878 Score = 44.3 bits (103), Expect = 0.054, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 7/54 (12%) Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 D I G+ GP + LLQ FG+V+ I E L I+G ++ + + Sbjct: 193 DNIPGVKGCGPKKAAALLQQFGSVEGI----LENLEHIKGSNQTMLKEQKEILQ 242 >gi|229916360|ref|YP_002885006.1| competence protein ComEA helix-hairpin-helix repeat protein [Exiguobacterium sp. AT1b] gi|229467789|gb|ACQ69561.1| competence protein ComEA helix-hairpin-helix repeat protein [Exiguobacterium sp. AT1b] Length = 191 Score = 44.3 bits (103), Expect = 0.054, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 15/32 (46%) Query: 581 ISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 ++ ++ E L ++ GI A I NH N Sbjct: 132 VNSATKEELMTVPGIGPAKAEAILNHLKANGP 163 >gi|282165652|ref|YP_003358037.1| DNA repair and recombination protein RadA [Methanocella paludicola SANAE] gi|282157966|dbj|BAI63054.1| DNA repair and recombination protein RadA [Methanocella paludicola SANAE] Length = 323 Score = 44.3 bits (103), Expect = 0.055, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 558 DEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606 +++ G+GP L ++ + +++ I+ +SP LA+ + + A KI Sbjct: 8 EDLPGVGPATADKLKEAGYTSIEAIAVASPSELAAAAEVGENTASKIVAA 57 >gi|271965900|ref|YP_003340096.1| exodeoxyribonuclease V [Streptosporangium roseum DSM 43021] gi|270509075|gb|ACZ87353.1| Exodeoxyribonuclease V [Streptosporangium roseum DSM 43021] Length = 738 Score = 44.3 bits (103), Expect = 0.056, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 5/56 (8%) Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603 ++ S L I GIGP ++ FG T+++I + PE L + G+ K I Sbjct: 92 QRYLGSGL--IKGIGPKMAERIVDHFGADTLQIIETA-PERLVEVPGLGPKRTKMI 144 >gi|172058107|ref|YP_001814567.1| Holliday junction DNA helicase RuvA [Exiguobacterium sibiricum 255-15] gi|229560031|sp|B1YJR2|RUVA_EXIS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|171990628|gb|ACB61550.1| Holliday junction DNA helicase RuvA [Exiguobacterium sibiricum 255-15] Length = 197 Score = 44.3 bits (103), Expect = 0.056, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 5/63 (7%) Query: 544 THRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKI 599 R RR++A ++ L + GIGP ++ S G V + + + L G+ KK Sbjct: 60 GFRSRRERALFTKLLGVTGIGPKGSLAIVAS-GDVDALVEAIEQEKESYLIKFPGVGKKT 118 Query: 600 ACK 602 A + Sbjct: 119 AKQ 121 >gi|282875982|ref|ZP_06284849.1| comEA protein [Staphylococcus epidermidis SK135] gi|281295007|gb|EFA87534.1| comEA protein [Staphylococcus epidermidis SK135] gi|329737348|gb|EGG73602.1| ComE operon protein 1 [Staphylococcus epidermidis VCU028] Length = 200 Score = 44.3 bits (103), Expect = 0.057, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A L I GIGP + + +L F ++ + L I+G KK K+ Sbjct: 145 ATEEQLKNIPGIGPSKAKEILNYREQNHGFNSI--------DDLMKIKGFGKKTFEKLKE 196 Query: 606 HF 607 HF Sbjct: 197 HF 198 >gi|164686324|ref|ZP_02210354.1| hypothetical protein CLOBAR_02762 [Clostridium bartlettii DSM 16795] gi|164601926|gb|EDQ95391.1| hypothetical protein CLOBAR_02762 [Clostridium bartlettii DSM 16795] Length = 236 Score = 44.3 bits (103), Expect = 0.057, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 LD+I G+G +L F ++ E + ++ GI K + + Sbjct: 184 QLDDIPGVGEATANKILSYRDENGEFKSI--------EEIKNVNGIGDKKFENMKD 231 >gi|291485217|dbj|BAI86292.1| DNA repair protein RadC [Bacillus subtilis subsp. natto BEST195] Length = 231 Score = 44.3 bits (103), Expect = 0.057, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 21/37 (56%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 LL+SF ++++ +S E L+SI GI A +I Sbjct: 56 RLLRSFDGLRLLKEASVEELSSIPGIGMVKAIQILAA 92 >gi|16079856|ref|NP_390682.1| DNA repair protein RadC [Bacillus subtilis subsp. subtilis str. 168] gi|221310744|ref|ZP_03592591.1| DNA repair protein RadC [Bacillus subtilis subsp. subtilis str. 168] gi|221315069|ref|ZP_03596874.1| DNA repair protein RadC [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319988|ref|ZP_03601282.1| DNA repair protein RadC [Bacillus subtilis subsp. subtilis str. JH642] gi|221324270|ref|ZP_03605564.1| DNA repair protein RadC [Bacillus subtilis subsp. subtilis str. SMY] gi|321312335|ref|YP_004204622.1| hypothetical protein BSn5_04835 [Bacillus subtilis BSn5] gi|400964|sp|Q02170|YSXA_BACSU RecName: Full=UPF0758 protein ysxA gi|142854|gb|AAA22396.1| homologous to E. coli radC gene product and to unidentified protein from Staphylococcus aureus [Bacillus subtilis] gi|143162|gb|AAA22583.1| orfB [Bacillus subtilis] gi|2635269|emb|CAB14764.1| putative DNA repair protein [Bacillus subtilis subsp. subtilis str. 168] gi|320018609|gb|ADV93595.1| hypothetical protein BSn5_04835 [Bacillus subtilis BSn5] Length = 231 Score = 44.3 bits (103), Expect = 0.057, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 21/37 (56%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 LL+SF ++++ +S E L+SI GI A +I Sbjct: 56 RLLRSFDGLRLLKEASVEELSSIPGIGMVKAIQILAA 92 >gi|86152359|ref|ZP_01070569.1| competence protein ComEA [Campylobacter jejuni subsp. jejuni 260.94] gi|121613207|ref|YP_999730.1| competence protein ComEA [Campylobacter jejuni subsp. jejuni 81-176] gi|153951474|ref|YP_001397284.1| competence protein ComEA [Campylobacter jejuni subsp. doylei 269.97] gi|167004706|ref|ZP_02270464.1| competence protein ComEA [Campylobacter jejuni subsp. jejuni 81-176] gi|205355752|ref|ZP_03222522.1| putative non-specific DNA binding protein [Campylobacter jejuni subsp. jejuni CG8421] gi|85840656|gb|EAQ57908.1| competence protein ComEA [Campylobacter jejuni subsp. jejuni 260.94] gi|87249012|gb|EAQ71974.1| competence protein ComEA [Campylobacter jejuni subsp. jejuni 81-176] gi|152938920|gb|ABS43661.1| competence protein ComEA [Campylobacter jejuni subsp. doylei 269.97] gi|205346529|gb|EDZ33162.1| putative non-specific DNA binding protein [Campylobacter jejuni subsp. jejuni CG8421] Length = 79 Score = 44.3 bits (103), Expect = 0.057, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 9/57 (15%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS---SPETLASIEGISKKIACKIYN 605 A L +NGIG + + +L+ + S + L ++GI K+ KI N Sbjct: 24 ATLKELKSLNGIGEAKAKAILEY------RKEANFTSIDDLKKVKGIGDKLFEKIKN 74 >gi|313123470|ref|YP_004033729.1| DNA uptake protein related DNA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280033|gb|ADQ60752.1| DNA uptake protein related DNA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 252 Score = 44.3 bits (103), Expect = 0.058, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 8/59 (13%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607 A S L ++NGIG + ++ G+ K S + L + GI K I + Sbjct: 197 ATASDLQKLNGIGEKKAEQIIAYRQEKGSFK-----SIDELKEVSGIGDKTFAAIKDQL 250 >gi|293366450|ref|ZP_06613127.1| conserved hypothetical protein [Staphylococcus epidermidis M23864:W2(grey)] gi|291319219|gb|EFE59588.1| conserved hypothetical protein [Staphylococcus epidermidis M23864:W2(grey)] gi|329735316|gb|EGG71608.1| ComE operon protein 1 [Staphylococcus epidermidis VCU045] Length = 200 Score = 44.3 bits (103), Expect = 0.058, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A L I GIGP + + +L F ++ + L I+G KK K+ Sbjct: 145 ATEEQLKNIPGIGPSKAKEILNYREQNHGFNSI--------DDLMKIKGFGKKTFEKLKE 196 Query: 606 HF 607 HF Sbjct: 197 HF 198 >gi|167755868|ref|ZP_02427995.1| hypothetical protein CLORAM_01385 [Clostridium ramosum DSM 1402] gi|237734836|ref|ZP_04565317.1| predicted protein [Mollicutes bacterium D7] gi|167704807|gb|EDS19386.1| hypothetical protein CLORAM_01385 [Clostridium ramosum DSM 1402] gi|229382164|gb|EEO32255.1| predicted protein [Coprobacillus sp. D7] Length = 166 Score = 44.3 bits (103), Expect = 0.058, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 13/61 (21%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS-----FGTVKMISRSSPETLASIEGISKKIACKIYNH 606 A+ L I GIGP ++ F ++ E + + GI +K +I Sbjct: 112 ASKEQLMTIKGIGPKTADKIIDYRNEHPF--------ATIEEIKEVSGIGEKTYLRIREL 163 Query: 607 F 607 Sbjct: 164 L 164 >gi|253583310|ref|ZP_04860508.1| DNA ligase [Fusobacterium varium ATCC 27725] gi|251833882|gb|EES62445.1| DNA ligase [Fusobacterium varium ATCC 27725] Length = 688 Score = 44.3 bits (103), Expect = 0.059, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 28/66 (42%) Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 K+R + I IG ++L ++ + + + E L I+GI K A +Y+ Sbjct: 516 KKRDYSKVIYALGIPFIGKYSGKILAEASRNIDNLMKMEIEELMEIDGIGDKGAKAVYDF 575 Query: 607 FHKNTS 612 F + Sbjct: 576 FRDEEN 581 >gi|317481235|ref|ZP_07940306.1| RecD/TraA family helicase [Bacteroides sp. 4_1_36] gi|316902568|gb|EFV24451.1| RecD/TraA family helicase [Bacteroides sp. 4_1_36] Length = 748 Score = 44.3 bits (103), Expect = 0.060, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603 K S L + GIGP +L++ FG T+ +I + E L + GI KK KI Sbjct: 83 KYLGSGL--VKGIGPKFAKLIVAKFGLETIDVIES-NIERLHEVPGIGKKRVEKI 134 >gi|332361706|gb|EGJ39510.1| competence protein CelA [Streptococcus sanguinis SK1056] Length = 226 Score = 44.3 bits (103), Expect = 0.060, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 A + L I+GIG R ++ + S + L + GI K K+ + Sbjct: 170 ATEAELQTISGIGQKRASDIIAYRESNGRFK--SVDDLKKVSGIGDKTLEKLKEY 222 >gi|327468971|gb|EGF14443.1| competence protein ComEA [Streptococcus sanguinis SK330] Length = 243 Score = 44.3 bits (103), Expect = 0.060, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 A + L I+GIG R ++ + S + L + GI K K+ + Sbjct: 187 ATEAELQTISGIGQKRASDIIAYRESNGRFK--SVDDLKKVSGIGDKTLEKLKEY 239 >gi|327458707|gb|EGF05055.1| competence protein CelA [Streptococcus sanguinis SK1057] Length = 239 Score = 44.3 bits (103), Expect = 0.060, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 A + L I+GIG R ++ + S + L + GI K K+ + Sbjct: 183 ATEAELQTISGIGQKRASDIIAYRESNGRFK--SVDDLKKVSGIGDKTLEKLKEY 235 >gi|308233991|ref|ZP_07664728.1| helix-hairpin-helix repeat-containing competence protein ComEA [Atopobium vaginae DSM 15829] gi|328944000|ref|ZP_08241465.1| competence protein ComEA [Atopobium vaginae DSM 15829] gi|327491969|gb|EGF23743.1| competence protein ComEA [Atopobium vaginae DSM 15829] Length = 277 Score = 44.3 bits (103), Expect = 0.060, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 20/67 (29%) Query: 551 KAAYSPLDEINGIGPLRKRLLL---------QSFGTVKMISRSSPETLASIEGISKKIAC 601 KA+ + L E+ G+GP ++ + E L ++GI K Sbjct: 221 KASKNELLELPGVGPAMADRIIADRREHGPFKH-----------VEDLKRVKGIGSKKFE 269 Query: 602 KIYNHFH 608 K+ + H Sbjct: 270 KVRKYLH 276 >gi|262369822|ref|ZP_06063149.1| DNA polymerase I [Acinetobacter johnsonii SH046] gi|262314861|gb|EEY95901.1| DNA polymerase I [Acinetobacter johnsonii SH046] Length = 921 Score = 44.3 bits (103), Expect = 0.061, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 7/48 (14%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + G+G LL +G++ I L +++ I K+ I H Sbjct: 187 GVPGVGAKTAAKLLTEYGSIGGI-------LENVDKIKGKVGQNIKEH 227 >gi|228477011|ref|ZP_04061649.1| late competence protein required for DNA binding and uptake [Streptococcus salivarius SK126] gi|228251030|gb|EEK10201.1| late competence protein required for DNA binding and uptake [Streptococcus salivarius SK126] Length = 231 Score = 44.3 bits (103), Expect = 0.061, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 8/59 (13%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 A L I+GIG R ++ G + S + L ++ GI K KI Sbjct: 175 ATSEELQTISGIGAKRAEDIITYRESHGGFQ-----SVDDLKNVSGIGDKTLEKIRESL 228 >gi|218442350|ref|YP_002380674.1| Excinuclease ABC C subunit domain protein [Cyanothece sp. PCC 7424] gi|218175454|gb|ACK74181.1| Excinuclease ABC C subunit domain protein [Cyanothece sp. PCC 7424] Length = 253 Score = 44.3 bits (103), Expect = 0.061, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIK-----SYMHSNNHTHRI 48 +++P P +Y + R+LY+GKA NLQKR Y + RI Sbjct: 54 QKLPPLPAIYFVFTPDKRLLYIGKADNLQKRWNNHYKYQYFVETSLDCRI 103 >gi|188997338|ref|YP_001931589.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium sp. YO3AOP1] gi|254781435|sp|B2V5U1|DNLJ_SULSY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|188932405|gb|ACD67035.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium sp. YO3AOP1] Length = 704 Score = 44.3 bits (103), Expect = 0.061, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 22/50 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + + L + + + + L + I K+A +IYN FH + Sbjct: 552 VGEVTAKTLASAVRCIDDLKNFTITDLMKLPDIGYKVASEIYNFFHNQEN 601 >gi|74317784|ref|YP_315524.1| competence protein ComEA [Thiobacillus denitrificans ATCC 25259] gi|74057279|gb|AAZ97719.1| Competence protein ComEA [Thiobacillus denitrificans ATCC 25259] Length = 89 Score = 44.3 bits (103), Expect = 0.061, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 14/58 (24%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKI 603 A S L+ I G+GP + + ++ F +V+ L ++G K K+ Sbjct: 27 ATQSELEAIRGVGPAKAKAIISYRDANGAFKSVQ--------ELDKVKGFGKASVEKL 76 >gi|219849021|ref|YP_002463454.1| Holliday junction DNA helicase RuvA [Chloroflexus aggregans DSM 9485] gi|254766951|sp|B8GCH4|RUVA_CHLAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|219543280|gb|ACL25018.1| Holliday junction DNA helicase RuvA [Chloroflexus aggregans DSM 9485] Length = 195 Score = 44.3 bits (103), Expect = 0.061, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKIYN 605 +++ + L ++G+GP LL S GT + LA + GI KK A +I Sbjct: 68 QRSLFEQLIGVSGVGPKLALSLLSS-GTPDEVRSMIAGGDVARLARVPGIGKKTAERIVL 126 Query: 606 HFH 608 Sbjct: 127 ELR 129 >gi|315303635|ref|ZP_07874170.1| DNA ligase, NAD-dependent [Listeria ivanovii FSL F6-596] gi|313627998|gb|EFR96596.1| DNA ligase, NAD-dependent [Listeria ivanovii FSL F6-596] Length = 678 Score = 44.3 bits (103), Expect = 0.062, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 22/53 (41%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G + L F T+ + + ETL I I +K+A I +F Sbjct: 515 GIRHVGAKAAKSLAIYFETMDKLKLADKETLTRINDIGEKMADSIVTYFANEE 567 >gi|297544718|ref|YP_003677020.1| DNA protecting protein DprA [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842493|gb|ADH61009.1| DNA protecting protein DprA [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 362 Score = 44.3 bits (103), Expect = 0.062, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 R+K L + GIG L++ F T + + ++ + G SKK+A KI Sbjct: 3 REKVFKIWLSAVKGIGYKNFVQLMEFFKTAEEVYKAKEIDIFRAVG-SKKLAQKIIEA 59 >gi|289578442|ref|YP_003477069.1| DNA protecting protein DprA [Thermoanaerobacter italicus Ab9] gi|289528155|gb|ADD02507.1| DNA protecting protein DprA [Thermoanaerobacter italicus Ab9] Length = 362 Score = 44.3 bits (103), Expect = 0.062, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 R+K L + GIG L+ F T + + ++ + G SKK+A KI Sbjct: 3 REKVFKIWLSAVKGIGYKNFVQLMGFFKTAEEVYKAKEIDIFKAVG-SKKLAQKIVEA 59 >gi|330444480|ref|YP_004377466.1| transcription termination factor NusA [Chlamydophila pecorum E58] gi|328807590|gb|AEB41763.1| transcription termination factor NusA [Chlamydophila pecorum E58] Length = 435 Score = 44.3 bits (103), Expect = 0.062, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%) Query: 556 PLDEINGIGPLRKRLLLQS--FGTVKMISRSSPETLASIEGISKKIACKIYN 605 PL EI GI L + L + + T++ + +S L+S+ GI ++A KI Sbjct: 367 PLQEIEGISKLVIQNL-EHAGYDTIRKVLLASASDLSSVPGIGLELAYKILE 417 >gi|291456922|ref|ZP_06596312.1| comEA protein-related protein [Bifidobacterium breve DSM 20213] gi|291382199|gb|EFE89717.1| comEA protein-related protein [Bifidobacterium breve DSM 20213] Length = 174 Score = 44.3 bits (103), Expect = 0.062, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 L I G+GP+ + ++ T+ +S + L ++GI K KI Sbjct: 122 ELQTITGVGPVTAQRIIDYRKTIG--RYASVDQLLGVKGIGSKTLEKI 167 >gi|219815945|gb|ACL37071.1| truncated DNA polymerase I [uncultured bacterium] Length = 557 Score = 44.3 bits (103), Expect = 0.063, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 18/71 (25%) Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEG-----------ISKKIACKI 603 D I GI G LL+ F ++ I ++ + + G +SKK+A I Sbjct: 192 DNIPGIAGIGEKTACKLLKEFDNLENIL-ANADNIKGAVGEKIRNGKEAALMSKKLARII 250 Query: 604 YN---HFHKNT 611 + FH+ Sbjct: 251 TDVPVQFHEED 261 >gi|75909670|ref|YP_323966.1| excinuclease ABC subunit C [Anabaena variabilis ATCC 29413] gi|75703395|gb|ABA23071.1| Excinuclease ABC, C subunit-like protein [Anabaena variabilis ATCC 29413] Length = 125 Score = 44.3 bits (103), Expect = 0.063, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 4/40 (10%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH 44 +P PG+Y + +LY+GK +L+ R + Sbjct: 36 DIPPRPGIYAIRHKNDGLLYIGKTKSLRGR----FSGGHK 71 >gi|332362760|gb|EGJ40556.1| competence protein [Streptococcus sanguinis SK49] Length = 239 Score = 44.3 bits (103), Expect = 0.064, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 A + L I+GIG R ++ + S + L + GI K K+ + Sbjct: 183 ATEAELQTISGIGQKRASDIIAYRESNGRFK--SVDDLKKVSGIGDKTLEKLKEY 235 >gi|327400087|ref|YP_004340926.1| DNA repair and recombination protein radA [Archaeoglobus veneficus SNP6] gi|327315595|gb|AEA46211.1| DNA repair and recombination protein radA [Archaeoglobus veneficus SNP6] Length = 328 Score = 44.3 bits (103), Expect = 0.064, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKI 603 L+++ +GP L ++ F T++ I+ +SP L++ I + A KI Sbjct: 15 LEDLPNVGPAIAEKLREAGFSTIEAIAVASPSELSAAAEIGESTAAKI 62 >gi|149278281|ref|ZP_01884419.1| DNA polymerase I [Pedobacter sp. BAL39] gi|149231047|gb|EDM36428.1| DNA polymerase I [Pedobacter sp. BAL39] Length = 937 Score = 44.3 bits (103), Expect = 0.064, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 12/58 (20%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLA-----SIE-----G-ISKKIACKIYN 605 I GIG + L++ +G+++ I ++ L ++E G +SKK+A I + Sbjct: 194 GIPGIGEKTAKSLIRQYGSMENII-ANAHELKGKQRENVEMYAQQGLVSKKLATIILD 250 >gi|328912483|gb|AEB64079.1| hypothetical protein LL3_02546 [Bacillus amyloliquefaciens LL3] Length = 388 Score = 44.3 bits (103), Expect = 0.065, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMIS-RSSPETLASIEGISKKIACKIYNH 606 PL I G+GP L ++FGT I R+ E LA + + KIA I+ Sbjct: 319 PLQFIPGVGPKTLEKLKRAFGTEMAILHRAKEEDLARV--VQPKIAAVIHKA 368 >gi|308174148|ref|YP_003920853.1| hypothetical protein BAMF_2257 [Bacillus amyloliquefaciens DSM 7] gi|307607012|emb|CBI43383.1| conserved hypothetical protein [Bacillus amyloliquefaciens DSM 7] gi|328554090|gb|AEB24582.1| hypothetical protein BAMTA208_12085 [Bacillus amyloliquefaciens TA208] Length = 387 Score = 44.3 bits (103), Expect = 0.065, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMIS-RSSPETLASIEGISKKIACKIYNH 606 PL I G+GP L ++FGT I R+ E LA + + KIA I+ Sbjct: 318 PLQFIPGVGPKTLEKLKRAFGTEMAILHRAKEEDLARV--VQPKIAAVIHKA 367 >gi|38505774|ref|NP_942288.1| exodeoxyribonuclease V alpha chain [Synechocystis sp. PCC 6803] gi|38423798|dbj|BAD02008.1| exodeoxyribonuclease V alpha chain [Synechocystis sp. PCC 6803] Length = 622 Score = 44.3 bits (103), Expect = 0.065, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603 K S L I G+GP+ + ++ FG T+++I S + L + GI KK I Sbjct: 87 KYLGSGL--IKGVGPVTAKRIVAHFGLETLEIIEGES-DRLMEVTGIGKKRVRMI 138 >gi|306833158|ref|ZP_07466288.1| NAD-dependent DNA ligase LigA [Streptococcus bovis ATCC 700338] gi|304424732|gb|EFM27868.1| NAD-dependent DNA ligase LigA [Streptococcus bovis ATCC 700338] Length = 652 Score = 44.3 bits (103), Expect = 0.065, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 29/54 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G R LL+ F T+ + + +++ASI+G+ IA + ++F K + Sbjct: 502 GIRHVGAKASRQLLEVFETIDQLVAADADSIASIDGLGTVIAKSLRSYFAKEEA 555 Score = 41.6 bits (96), Expect = 0.35, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 6/54 (11%) Query: 559 EINGIGPLRKRLLLQ----SFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I G+GP + L + V I + + E L S++G +K A K+YN Sbjct: 436 NITGLGPSIVKKLFKAELVH--DVADIYQLTVEDLLSLDGFKEKSAEKLYNAIQ 487 >gi|224543223|ref|ZP_03683762.1| hypothetical protein CATMIT_02423 [Catenibacterium mitsuokai DSM 15897] gi|224523856|gb|EEF92961.1| hypothetical protein CATMIT_02423 [Catenibacterium mitsuokai DSM 15897] Length = 664 Score = 44.3 bits (103), Expect = 0.065, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I GIG L FG++ + ++ L SI+ + IA + F +N + Sbjct: 511 GIKGIGAKMADTLAYHFGSMDALLNANYVQLTSIKDVGDTIASSL-AAFKRNERN 564 >gi|55379507|ref|YP_137357.1| DNA repair and recombination protein RadA [Haloarcula marismortui ATCC 43049] gi|55232232|gb|AAV47651.1| DNA repair and recombination protein RadA [Haloarcula marismortui ATCC 43049] Length = 351 Score = 44.3 bits (103), Expect = 0.065, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 L+E+ G+GP L + + + + I+ +SP L++ I + A I + Sbjct: 9 LEELPGVGPATAEKLEDNGYDSYQGIAVASPGELSNTADIGESSAADIIQAAREAAD 65 >gi|21673293|ref|NP_661358.1| DNA ligase, NAD-dependent [Chlorobium tepidum TLS] gi|81791793|sp|Q8KF74|DNLJ_CHLTE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|21646383|gb|AAM71700.1| DNA ligase, NAD-dependent [Chlorobium tepidum TLS] Length = 674 Score = 44.3 bits (103), Expect = 0.065, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 548 RRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 + KK +Y+ L I +G R L + ++ + E LA++ I IA I Sbjct: 509 KSKKQSYARLLFALGIRHVGAATARELAHACPSIDRLREMDEEALAAVPDIGPVIAASIR 568 Query: 605 NHFHK 609 + F K Sbjct: 569 DFFAK 573 >gi|50364975|ref|YP_053400.1| DNA ligase, polydeoxyribonucleotide synthase NAD+ [Mesoplasma florum L1] gi|81391966|sp|Q6F1V7|DNLJ_MESFL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|50363531|gb|AAT75516.1| DNA ligase, polydeoxyribonucleotide synthase NAD+ [Mesoplasma florum L1] Length = 666 Score = 44.3 bits (103), Expect = 0.066, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 25/54 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G L Q + + + ++ E L+SI+ + + +A I + F ++ Sbjct: 513 GIRHVGSKTALTLAQIYKNIDNLKNATYEELSSIDSVGEVLAMSIVDWFKIESN 566 >gi|315146726|gb|EFT90742.1| comEA protein [Enterococcus faecalis TX4244] Length = 225 Score = 44.3 bits (103), Expect = 0.067, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVSGIGEKTVERLKD 219 Query: 606 HF 607 Sbjct: 220 ML 221 >gi|307271557|ref|ZP_07552829.1| comEA protein [Enterococcus faecalis TX0855] gi|306511829|gb|EFM80827.1| comEA protein [Enterococcus faecalis TX0855] gi|315035753|gb|EFT47685.1| comEA protein [Enterococcus faecalis TX0027] Length = 225 Score = 44.3 bits (103), Expect = 0.067, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVSGIGEKTVERLKD 219 Query: 606 HF 607 Sbjct: 220 ML 221 >gi|307277117|ref|ZP_07558221.1| comEA protein [Enterococcus faecalis TX2134] gi|306506047|gb|EFM75213.1| comEA protein [Enterococcus faecalis TX2134] Length = 225 Score = 44.3 bits (103), Expect = 0.067, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVSGIGEKTVERLKD 219 Query: 606 HF 607 Sbjct: 220 ML 221 >gi|257419902|ref|ZP_05596896.1| competence protein comEA [Enterococcus faecalis T11] gi|257161730|gb|EEU91690.1| competence protein comEA [Enterococcus faecalis T11] Length = 225 Score = 44.3 bits (103), Expect = 0.067, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVSGIGEKTVERLKD 219 Query: 606 HF 607 Sbjct: 220 ML 221 >gi|256963616|ref|ZP_05567787.1| competence protein comEA [Enterococcus faecalis HIP11704] gi|256954112|gb|EEU70744.1| competence protein comEA [Enterococcus faecalis HIP11704] Length = 211 Score = 44.3 bits (103), Expect = 0.067, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 154 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVSGIGEKTVERLKD 205 Query: 606 HF 607 Sbjct: 206 ML 207 >gi|256956726|ref|ZP_05560897.1| competence protein comEA [Enterococcus faecalis DS5] gi|256947222|gb|EEU63854.1| competence protein comEA [Enterococcus faecalis DS5] Length = 211 Score = 44.3 bits (103), Expect = 0.067, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 154 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVSGIGEKTVERLKD 205 Query: 606 HF 607 Sbjct: 206 ML 207 >gi|256616994|ref|ZP_05473840.1| competence protein CelA [Enterococcus faecalis ATCC 4200] gi|256596521|gb|EEU15697.1| competence protein CelA [Enterococcus faecalis ATCC 4200] Length = 214 Score = 44.3 bits (103), Expect = 0.067, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 157 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVSGIGEKTVERLKD 208 Query: 606 HF 607 Sbjct: 209 ML 210 >gi|300860782|ref|ZP_07106869.1| putative ComE operon protein 1 [Enterococcus faecalis TUSoD Ef11] gi|300849821|gb|EFK77571.1| putative ComE operon protein 1 [Enterococcus faecalis TUSoD Ef11] Length = 214 Score = 44.3 bits (103), Expect = 0.067, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +++ F + E L ++ GI +K ++ + Sbjct: 157 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVSGIGEKTVERLKD 208 Query: 606 HF 607 Sbjct: 209 ML 210 >gi|15920489|ref|NP_376158.1| DNA repair and recombination protein RadA [Sulfolobus tokodaii str. 7] gi|20139589|sp|Q975Y1|RADA_SULTO RecName: Full=DNA repair and recombination protein radA gi|15621272|dbj|BAB65267.1| 324aa long hypothetical DNA repair protein radA [Sulfolobus tokodaii str. 7] Length = 324 Score = 44.3 bits (103), Expect = 0.067, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 2/55 (3%) Query: 550 KKAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKI 603 K S L ++ G+G L+++ + +++ ++ +SP+ L+ GI A +I Sbjct: 8 GKKVKS-LSDLPGVGQSILNKLIEAGYSSLEAVAVASPQDLSVAAGIPLTTAQRI 61 >gi|325288193|ref|YP_004263983.1| DNA ligase [Cellulophaga lytica DSM 7489] gi|324323647|gb|ADY31112.1| DNA ligase [Cellulophaga lytica DSM 7489] Length = 664 Score = 44.3 bits (103), Expect = 0.067, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + L +++ + + +S LA+++ I ++IA + F + Sbjct: 515 VGETVAKKLAKAYKNIDALMYASALELATVDEIGERIASSVVAFFQNEIN 564 >gi|193683523|ref|XP_001944270.1| PREDICTED: DNA excision repair protein ERCC-1-like [Acyrthosiphon pisum] Length = 267 Score = 44.3 bits (103), Expect = 0.067, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 24/39 (61%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 LL +FG+++ I ++S LA G ++ A ++YN HK Sbjct: 211 LLSTFGSLENICKASQTALALCPGFAQHKATQLYNTLHK 249 >gi|188584801|ref|YP_001916346.1| protein of unknown function DUF147 [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349488|gb|ACB83758.1| protein of unknown function DUF147 [Natranaerobius thermophilus JW/NM-WN-LF] Length = 363 Score = 44.3 bits (103), Expect = 0.067, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 19/37 (51%) Query: 573 QSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + FG ++ I +S E L +EGI + A I + + Sbjct: 316 ERFGDLRGILNASIEELDDVEGIGEIRARVIKDGLRR 352 >gi|16081891|ref|NP_394295.1| ski2-like helicase [Thermoplasma acidophilum DSM 1728] gi|18202974|sp|Q9HJX7|HELS_THEAC RecName: Full=Putative ski2-type helicase gi|10640112|emb|CAC11964.1| DNA helicase related protein [Thermoplasma acidophilum] Length = 674 Score = 44.3 bits (103), Expect = 0.067, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%) Query: 560 INGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKI 603 I G+G +R R L + +++ ++ +SP+ + +I G S +A I Sbjct: 617 IPGVGRVRARRLYDAGLRSIEDVASASPDRIKAIYGFSDTLANAI 661 >gi|121587330|ref|ZP_01677101.1| DNA ligase [Vibrio cholerae 2740-80] gi|121730035|ref|ZP_01682446.1| DNA ligase [Vibrio cholerae V52] gi|147675693|ref|YP_001216443.1| NAD-dependent DNA ligase LigA [Vibrio cholerae O395] gi|153818602|ref|ZP_01971269.1| DNA ligase [Vibrio cholerae NCTC 8457] gi|227081145|ref|YP_002809696.1| DNA ligase [Vibrio cholerae M66-2] gi|229505430|ref|ZP_04394940.1| DNA ligase [Vibrio cholerae BX 330286] gi|262167192|ref|ZP_06034905.1| DNA ligase [Vibrio cholerae RC27] gi|298498912|ref|ZP_07008719.1| DNA ligase, NAD-dependent [Vibrio cholerae MAK 757] gi|190359299|sp|A5F2W3|DNLJ_VIBC3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781449|sp|C3LTL9|DNLJ_VIBCM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|121548413|gb|EAX58473.1| DNA ligase [Vibrio cholerae 2740-80] gi|121628224|gb|EAX60744.1| DNA ligase [Vibrio cholerae V52] gi|126510828|gb|EAZ73422.1| DNA ligase [Vibrio cholerae NCTC 8457] gi|146317576|gb|ABQ22115.1| DNA ligase [Vibrio cholerae O395] gi|227009033|gb|ACP05245.1| DNA ligase [Vibrio cholerae M66-2] gi|227012788|gb|ACP08998.1| DNA ligase [Vibrio cholerae O395] gi|229357653|gb|EEO22570.1| DNA ligase [Vibrio cholerae BX 330286] gi|262024413|gb|EEY43101.1| DNA ligase [Vibrio cholerae RC27] gi|297543245|gb|EFH79295.1| DNA ligase, NAD-dependent [Vibrio cholerae MAK 757] Length = 669 Score = 44.3 bits (103), Expect = 0.067, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 22/52 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L Q F +++ I ++S E + + +A + F ++ + Sbjct: 520 VGDATALNLAQHFLSLEAIQQASLEQFIEVPDVGVVVASHLLAFFAQDRNQQ 571 >gi|207110787|ref|ZP_03244949.1| excinuclease ABC subunit C [Helicobacter pylori HPKX_438_CA4C1] Length = 50 Score = 44.3 bits (103), Expect = 0.068, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 17/33 (51%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 L + GIG + LL FG+ + I ++S + Sbjct: 4 ALLKEKGIGEASVKKLLDYFGSFEAIEKASEQE 36 >gi|229512467|ref|ZP_04401940.1| DNA ligase [Vibrio cholerae TMA 21] gi|229350548|gb|EEO15495.1| DNA ligase [Vibrio cholerae TMA 21] Length = 669 Score = 44.3 bits (103), Expect = 0.068, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 22/52 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L Q F +++ I ++S E + + +A + F ++ + Sbjct: 520 VGEATALNLAQHFLSLEAIQQASLEQFIEVPDVGVIVASHLQAFFAQDRNQQ 571 >gi|303327018|ref|ZP_07357460.1| DNA ligase, NAD-dependent [Desulfovibrio sp. 3_1_syn3] gi|302863006|gb|EFL85938.1| DNA ligase, NAD-dependent [Desulfovibrio sp. 3_1_syn3] Length = 711 Score = 43.9 bits (102), Expect = 0.069, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 S L I +G RLL F + + R+ ETL ++ + ++A I N + Sbjct: 536 RLISAL-GIRHVGEQTARLLAGHFRDLDDLGRADAETLQALPDVGPEVAASIRNFY 590 >gi|154686604|ref|YP_001421765.1| YqxK [Bacillus amyloliquefaciens FZB42] gi|154352455|gb|ABS74534.1| YqxK [Bacillus amyloliquefaciens FZB42] Length = 387 Score = 43.9 bits (102), Expect = 0.069, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMIS-RSSPETLASIEGISKKIACKIYNH 606 PL I G+GP L ++FGT I ++ E LA + + KIA I+ Sbjct: 318 PLQFIPGVGPKTLEKLKRAFGTEMAILHQAQEEELARV--VQPKIAAVIHKA 367 >gi|158340275|ref|YP_001521445.1| RecD/TraA family helicase [Acaryochloris marina MBIC11017] gi|158310516|gb|ABW32131.1| helicase, RecD/TraA family [Acaryochloris marina MBIC11017] Length = 753 Score = 43.9 bits (102), Expect = 0.069, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 5/59 (8%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHF 607 K S L I G+GP+ + ++ FG T+ I + E L + GI+KK I Sbjct: 95 KYLGSGL--IKGVGPVTAKRIVAHFGLDTLD-IIETHIERLIEVPGIAKKRVKLIQTAL 150 >gi|125717568|ref|YP_001034701.1| DNA uptake protein [Streptococcus sanguinis SK36] gi|125497485|gb|ABN44151.1| DNA uptake protein, putative [Streptococcus sanguinis SK36] Length = 226 Score = 43.9 bits (102), Expect = 0.069, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 A + L I+GIG R ++ + S + L + GI K K+ + Sbjct: 170 ATEAELQTISGIGQKRASDIIAYRESNGRFK--SVDDLKKVSGIGDKTLEKLKEY 222 >gi|94971244|ref|YP_593292.1| NusA antitermination factor [Candidatus Koribacter versatilis Ellin345] gi|94553294|gb|ABF43218.1| NusA antitermination factor [Candidatus Koribacter versatilis Ellin345] Length = 534 Score = 43.9 bits (102), Expect = 0.069, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 7/54 (12%) Query: 555 SPLDEINGIGPLRKRLL----LQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 +PLD++ +G L + +V+ ++ +PE L + GI K KI+ Sbjct: 364 TPLDKVPDLGEAIIEKLSAAGIN---SVEALADMTPEQLEEVPGIGPKTVDKIF 414 >gi|169831623|ref|YP_001717605.1| DNA repair protein RadC [Candidatus Desulforudis audaxviator MP104C] gi|229485551|sp|B1I4S0|Y1467_DESAP RecName: Full=UPF0758 protein Daud_1467 gi|169638467|gb|ACA59973.1| DNA repair protein RadC [Candidatus Desulforudis audaxviator MP104C] Length = 230 Score = 43.9 bits (102), Expect = 0.070, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 20/38 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +L FG ++ ++ + E L +++G+ + ++ F Sbjct: 55 QILSRFGGLRGLAEAGIEELQAVKGVGPAKSAEVRAAF 92 >gi|169237523|ref|YP_001690727.1| hypothetical protein OE5289R [Halobacterium salinarum R1] gi|167728750|emb|CAP15609.1| hypothetical protein OE5289R [Halobacterium salinarum R1] Length = 478 Score = 43.9 bits (102), Expect = 0.070, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 3/51 (5%) Query: 557 LDEINGIGPLRKRLLLQ--SFGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + G+G R+ LL + ++++ +A ++GI KK A I Sbjct: 199 LETVTGVG-HRRAELLNNAEIRSRADLAQAEVYEIAQLDGIGKKTARTIVE 248 >gi|150392192|ref|YP_001322241.1| DNA integrity scanning protein DisA [Alkaliphilus metalliredigens QYMF] gi|149952054|gb|ABR50582.1| protein of unknown function DUF147 [Alkaliphilus metalliredigens QYMF] Length = 358 Score = 43.9 bits (102), Expect = 0.070, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 19/41 (46%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L+ F + + I ++S E L +EGI + A I + Sbjct: 307 ENLVNQFPSFQKILKASIEKLDEVEGIGEIRARAIKEGLRR 347 >gi|57236924|ref|YP_178039.1| competence protein ComEA [Campylobacter jejuni RM1221] gi|86150531|ref|ZP_01068755.1| competence protein ComEA [Campylobacter jejuni subsp. jejuni CF93-6] gi|86153956|ref|ZP_01072158.1| conserved domain protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597700|ref|ZP_01100933.1| competence protein ComEA [Campylobacter jejuni subsp. jejuni 84-25] gi|148926829|ref|ZP_01810508.1| putative non-specific DNA binding protein [Campylobacter jejuni subsp. jejuni CG8486] gi|218561704|ref|YP_002343483.1| putative non-specific DNA binding protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|57165728|gb|AAW34507.1| competence protein ComEA [Campylobacter jejuni RM1221] gi|85838983|gb|EAQ56248.1| competence protein ComEA [Campylobacter jejuni subsp. jejuni CF93-6] gi|85842494|gb|EAQ59707.1| conserved domain protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|88190004|gb|EAQ93980.1| competence protein ComEA [Campylobacter jejuni subsp. jejuni 84-25] gi|112359410|emb|CAL34192.1| putative non-specific DNA binding protein. Functional classification-Synthesis and modification of macromolecules-DNA replication,restriction/modification, recombination and repair [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145844554|gb|EDK21661.1| putative non-specific DNA binding protein [Campylobacter jejuni subsp. jejuni CG8486] gi|284925314|gb|ADC27666.1| competence protein ComEA [Campylobacter jejuni subsp. jejuni IA3902] gi|307746974|gb|ADN90244.1| Competence protein ComEA [Campylobacter jejuni subsp. jejuni M1] gi|315057451|gb|ADT71780.1| Periplasmic dsDNA and ssDNA-binding protein [Campylobacter jejuni subsp. jejuni S3] gi|315928451|gb|EFV07763.1| comE1 [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929938|gb|EFV09095.1| comE1 [Campylobacter jejuni subsp. jejuni 305] Length = 79 Score = 43.9 bits (102), Expect = 0.070, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 9/57 (15%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS---SPETLASIEGISKKIACKIYN 605 A L +NGIG + + +L+ + S + L ++GI K+ KI N Sbjct: 24 ATLKELKSLNGIGEAKAKAILEY------RKEANFTSIDDLKKVKGIGDKLFEKIKN 74 >gi|295110374|emb|CBL24327.1| DNA ligase, NAD-dependent [Ruminococcus obeum A2-162] Length = 624 Score = 43.9 bits (102), Expect = 0.071, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 7/71 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKI 603 KA + L I+ IG +++ + F + I + E +++I+GI IA + Sbjct: 454 KAKKTTLAKVIYSLGISNIGLSNAKVICRYFDDDLDKIRSAKEEEISAIDGIGPVIAGSL 513 Query: 604 YNHFHKNTSHT 614 +F K+ ++ Sbjct: 514 TKYFAKSENNQ 524 >gi|294784746|ref|ZP_06750034.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_27] gi|294486460|gb|EFG33822.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_27] Length = 696 Score = 43.9 bits (102), Expect = 0.071, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 K YS I IG + ++L ++ + + + E L SIEGI + A +I F K Sbjct: 531 KVIYS--LGIPFIGKVASKILAKASKNIDKLMTMTFEELTSIEGIGEIAANEIIAFFKKE 588 Query: 611 TSH 613 + Sbjct: 589 KNQ 591 >gi|152964571|ref|YP_001360355.1| DNA integrity scanning protein DisA [Kineococcus radiotolerans SRS30216] gi|189083128|sp|A6W5K2|DISA_KINRD RecName: Full=DNA integrity scanning protein disA gi|151359088|gb|ABS02091.1| protein of unknown function DUF147 [Kineococcus radiotolerans SRS30216] Length = 359 Score = 43.9 bits (102), Expect = 0.071, Method: Composition-based stats. Identities = 7/39 (17%), Positives = 20/39 (51%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L+ FG ++ + +S + L +++G+ ++ A + Sbjct: 308 ERLVDQFGDLQKLLAASIDDLMTVDGVGEQRARAVREGL 346 >gi|313106533|ref|ZP_07792762.1| DNA ligase [Pseudomonas aeruginosa 39016] gi|310879264|gb|EFQ37858.1| DNA ligase [Pseudomonas aeruginosa 39016] Length = 794 Score = 43.9 bits (102), Expect = 0.072, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 28/49 (57%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G +LL +S G+++ I ++ PE L + + ++A +I+N F Sbjct: 540 GIPDVGEETAKLLARSLGSLERIGKALPEVLTYLPDVGAEVAYEIHNFF 588 Score = 40.9 bits (94), Expect = 0.72, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 22/54 (40%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I I L FG++ I R+ L +E + ++ A + + F + + Sbjct: 633 NIPFIAATGAEKLASRFGSLDGIIRADWLDLRQVERLPERAAKSLRDFFDEPAN 686 >gi|296390104|ref|ZP_06879579.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa PAb1] Length = 794 Score = 43.9 bits (102), Expect = 0.072, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 28/49 (57%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G +LL +S G+++ I ++ PE L + + ++A +I+N F Sbjct: 540 GIPDVGEETAKLLARSLGSLERIGKALPEVLTYLPDVGAEVAYEIHNFF 588 Score = 40.9 bits (94), Expect = 0.72, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 22/54 (40%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I I L FG++ I R+ L +E + ++ A + + F + + Sbjct: 633 NIPFIAATGAEKLASRFGSLDGIIRADWLDLRQVERLPERAAKSLRDFFDEPAN 686 >gi|262374856|ref|ZP_06068090.1| DNA polymerase I [Acinetobacter lwoffii SH145] gi|262309869|gb|EEY90998.1| DNA polymerase I [Acinetobacter lwoffii SH145] Length = 920 Score = 43.9 bits (102), Expect = 0.072, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 7/48 (14%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + G+G LL +G++ I L +++ I K+ I H Sbjct: 187 GVPGVGAKTAAKLLTEYGSIGGI-------LENVDKIKGKVGQNIKEH 227 >gi|220904890|ref|YP_002480202.1| DNA repair protein RadC [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869189|gb|ACL49524.1| DNA repair protein RadC [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 229 Score = 43.9 bits (102), Expect = 0.072, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 15/72 (20%) Query: 543 TTHRKR-RKKAAYSP--------LDEINGIGPLRK------RLLLQSFGTVKMISRSSPE 587 T HR R R++ P L+ + G RK + LL+ FG ++ + + P+ Sbjct: 12 TGHRARLRERFERDPAGMADYEVLELLLGYSLTRKDTKPLAKELLRRFGGIRGVMDARPD 71 Query: 588 TLASIEGISKKI 599 L ++ G + Sbjct: 72 ELLAVPGFGPGL 83 >gi|253702454|ref|YP_003023643.1| DNA repair protein RadC [Geobacter sp. M21] gi|251777304|gb|ACT19885.1| DNA repair protein RadC [Geobacter sp. M21] Length = 231 Score = 43.9 bits (102), Expect = 0.072, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 8/54 (14%) Query: 554 YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 S LD +G R L+ FG++ +++ +S + ++GI A I Sbjct: 45 RSALD----LG----RELMLQFGSLSLLADASCSEIQKVKGIGPAKATCILAAL 90 >gi|152984776|ref|YP_001349158.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa PA7] gi|190359272|sp|A6V7X3|DNLJ_PSEA7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|150959934|gb|ABR81959.1| DNA ligase, NAD-dependent [Pseudomonas aeruginosa PA7] Length = 794 Score = 43.9 bits (102), Expect = 0.072, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 28/49 (57%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G +LL +S G+++ I ++ PE L + + ++A +I+N F Sbjct: 540 GIPDVGEETAKLLARSLGSLERIGKALPEVLTYLPDVGAEVAYEIHNFF 588 Score = 39.7 bits (91), Expect = 1.3, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 21/54 (38%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I I L FG++ I R+ L +E + ++ A + + + + Sbjct: 633 NIPFIAATGAEKLASRFGSLDGIIRADWLDLRQVERLPERAAKSLRDFLDEPAN 686 >gi|15596726|ref|NP_250220.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa PAO1] gi|107100960|ref|ZP_01364878.1| hypothetical protein PaerPA_01001990 [Pseudomonas aeruginosa PACS2] gi|218892513|ref|YP_002441382.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa LESB58] gi|81541359|sp|Q9I3I4|DNLJ_PSEAE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781394|sp|B7UVJ3|DNLJ_PSEA8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|9947487|gb|AAG04918.1|AE004581_5 DNA ligase [Pseudomonas aeruginosa PAO1] gi|218772741|emb|CAW28526.1| DNA ligase [Pseudomonas aeruginosa LESB58] Length = 794 Score = 43.9 bits (102), Expect = 0.072, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 28/49 (57%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G +LL +S G+++ I ++ PE L + + ++A +I+N F Sbjct: 540 GIPDVGEETAKLLARSLGSLERIGKALPEVLTYLPDVGAEVAYEIHNFF 588 Score = 40.9 bits (94), Expect = 0.72, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 22/54 (40%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I I L FG++ I R+ L +E + ++ A + + F + + Sbjct: 633 NIPFIAATGAEKLASRFGSLDGIIRADWLDLRQVERLPERAAKSLRDFFDEPAN 686 >gi|254239878|ref|ZP_04933200.1| DNA ligase [Pseudomonas aeruginosa 2192] gi|126193256|gb|EAZ57319.1| DNA ligase [Pseudomonas aeruginosa 2192] Length = 794 Score = 43.9 bits (102), Expect = 0.072, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 28/49 (57%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G +LL +S G+++ I ++ PE L + + ++A +I+N F Sbjct: 540 GIPDVGEETAKLLARSLGSLERIGKALPEVLTYLPDVGAEVAYEIHNFF 588 Score = 40.9 bits (94), Expect = 0.72, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 22/54 (40%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I I L FG++ I R+ L +E + ++ A + + F + + Sbjct: 633 NIPFIAATGAEKLASRFGSLDGIIRADWLDLRQVERLPERAAKSLRDFFDEPAN 686 >gi|254234624|ref|ZP_04927947.1| DNA ligase [Pseudomonas aeruginosa C3719] gi|126166555|gb|EAZ52066.1| DNA ligase [Pseudomonas aeruginosa C3719] Length = 794 Score = 43.9 bits (102), Expect = 0.072, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 28/49 (57%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G +LL +S G+++ I ++ PE L + + ++A +I+N F Sbjct: 540 GIPDVGEETAKLLARSLGSLERIGKALPEVLTYLPDVGAEVAYEIHNFF 588 Score = 40.9 bits (94), Expect = 0.72, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 22/54 (40%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I I L FG++ I R+ L +E + ++ A + + F + + Sbjct: 633 NIPFIAATGAEKLASRFGSLDGIIRADWLDLRQVERLPERAAKSLRDFFDEPAN 686 >gi|116049473|ref|YP_791724.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa UCBPP-PA14] gi|122258581|sp|Q02K12|DNLJ_PSEAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|115584694|gb|ABJ10709.1| DNA ligase [Pseudomonas aeruginosa UCBPP-PA14] Length = 794 Score = 43.9 bits (102), Expect = 0.072, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 28/49 (57%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G +LL +S G+++ I ++ PE L + + ++A +I+N F Sbjct: 540 GIPDVGEETAKLLARSLGSLERIGKALPEVLTYLPDVGAEVAYEIHNFF 588 Score = 40.9 bits (94), Expect = 0.72, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 22/54 (40%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I I L FG++ I R+ L +E + ++ A + + F + + Sbjct: 633 NIPFIAATGAEKLASRFGSLDGIIRADWLDLRQVERLPERAAKSLRDFFDEPAN 686 >gi|325688277|gb|EGD30296.1| competence protein CelA [Streptococcus sanguinis SK72] gi|328945523|gb|EGG39674.1| competence protein comEA [Streptococcus sanguinis SK1087] Length = 239 Score = 43.9 bits (102), Expect = 0.072, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 A + L I+GIG R ++ + S + L + GI K K+ + Sbjct: 183 ATEAELQTISGIGQKRASDIIAYRESNGRFK--SVDDLKKVSGIGDKTLEKLKEY 235 >gi|307150454|ref|YP_003885838.1| helicase, RecD/TraA family [Cyanothece sp. PCC 7822] gi|306980682|gb|ADN12563.1| helicase, RecD/TraA family [Cyanothece sp. PCC 7822] Length = 742 Score = 43.9 bits (102), Expect = 0.072, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKK 598 K S L I G+GP+ + ++ FG T+++I + + L + GI KK Sbjct: 97 KYLGSGL--IKGVGPVTAKRIVAHFGLETLEIIENKT-QRLIEVPGIGKK 143 >gi|13541288|ref|NP_110976.1| DNA repair and recombination protein RadA [Thermoplasma volcanium GSS1] gi|20139594|sp|Q97BJ9|RADA_THEVO RecName: Full=DNA repair and recombination protein radA gi|14324671|dbj|BAB59598.1| cell cycle progression protein DMC1 [Thermoplasma volcanium GSS1] Length = 323 Score = 43.9 bits (102), Expect = 0.072, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISK 597 K + L+++ G+G L ++ + + I+ +SP+ L+ + GI + Sbjct: 8 KEKKTTLEDLPGVGEATAEKLRENGYDDIMAIAVASPKDLSDVTGIGE 55 >gi|218961079|ref|YP_001740854.1| hypothetical protein CLOAM0765 [Candidatus Cloacamonas acidaminovorans] gi|167729736|emb|CAO80648.1| hypothetical protein CLOAM0765 [Candidatus Cloacamonas acidaminovorans] Length = 312 Score = 43.9 bits (102), Expect = 0.073, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 78/225 (34%), Gaps = 21/225 (9%) Query: 19 AGRVLYVGKAYNLQKRIKSYMHSNNHTHRI----THMISQINNIRFTVTCTEVEALLLEA 74 AG VLY G + NL+ ++K SN + + + + + + AL+ Sbjct: 29 AGEVLYAGYSANLKAKLK--FLSNK--AKEGGIYQELWNLAEKLSWITYPQAIFALIHYK 84 Query: 75 NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134 + P + +R + Y+ + H+ P + + + Y GPF S + Sbjct: 85 CYLTENSPLYQYQIRPWADYVYLALD-SHRFPFITIQ-EHTNDDWLYLGPFRSRFFLIDV 142 Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSG------PCTGEISSEKYMEFVHEAK 188 ++ R L PC + C G + + + + K Sbjct: 143 LDIYARILKL-----PACETGEYPCEKREKNLCQGWCLALDENSEKPTDYDLDKLESLLK 197 Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233 + +++ E I + N+ +++ + + + + L+ + Sbjct: 198 EAFLVPENSILELIQQERNKYFNALEFDKSSLLDEDIEILNKYRE 242 >gi|119509167|ref|ZP_01628318.1| SMF protein [Nodularia spumigena CCY9414] gi|119466333|gb|EAW47219.1| SMF protein [Nodularia spumigena CCY9414] Length = 372 Score = 43.9 bits (102), Expect = 0.073, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI---YNHFHKNT 611 I+G+GP+ R L Q FGT+ ++ L +EG + K+ +H H Sbjct: 14 ISGVGPVLLRRLHQHFGTLATAWNATKAQLREVEGFGFQTLEKVVAQRSHLHPEQ 68 >gi|78044853|ref|YP_360635.1| RecD/TraA family helicase [Carboxydothermus hydrogenoformans Z-2901] gi|77996968|gb|ABB15867.1| helicase, RecD/TraA family [Carboxydothermus hydrogenoformans Z-2901] Length = 745 Score = 43.9 bits (102), Expect = 0.073, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 3/54 (5%) Query: 559 EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 + GIG +++ FG ++ +I + L I GIS + A +Y + Sbjct: 97 GVKGIGEKTAAKIVERFGMDSLTVILK-DFSQLTKIRGISFEKAESLYQKLKEE 149 >gi|312130376|ref|YP_003997716.1| DNA protecting protein dpra [Leadbetterella byssophila DSM 17132] gi|311906922|gb|ADQ17363.1| DNA protecting protein DprA [Leadbetterella byssophila DSM 17132] Length = 359 Score = 43.9 bits (102), Expect = 0.074, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 16/73 (21%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI----------- 599 K A S L+ GIG + ++L+ G+ + + ++ L+ I GI ++ Sbjct: 11 KIALSRLE---GIGGVLFKILITRLGSAQEVFQTPLSKLSKIPGIGPQLSQSLRQKTDAL 67 Query: 600 --ACKIYNHFHKN 610 A KI + +KN Sbjct: 68 LEAEKILKYCNKN 80 >gi|269925224|ref|YP_003321847.1| DNA protecting protein DprA [Thermobaculum terrenum ATCC BAA-798] gi|269788884|gb|ACZ41025.1| DNA protecting protein DprA [Thermobaculum terrenum ATCC BAA-798] Length = 365 Score = 43.9 bits (102), Expect = 0.074, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 17/34 (50%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 I IGP R R LL FG ++ ++ L + E Sbjct: 19 IPSIGPARIRKLLAHFGGLQRAWEANALELKAAE 52 >gi|300781381|ref|ZP_07091235.1| NAD-dependent DNA ligase LigA [Corynebacterium genitalium ATCC 33030] gi|300533088|gb|EFK54149.1| NAD-dependent DNA ligase LigA [Corynebacterium genitalium ATCC 33030] Length = 674 Score = 43.9 bits (102), Expect = 0.074, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 22/49 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L +G++ + +S + LA +G+ IA F Sbjct: 519 SIRHVGPTAARALASRYGSMGKLLDASVDDLADTDGVGGIIAESFKEWF 567 >gi|256846124|ref|ZP_05551582.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_36A2] gi|256719683|gb|EEU33238.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_36A2] Length = 696 Score = 43.9 bits (102), Expect = 0.074, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 K YS I IG + ++L ++ + + + E L SIEGI + A +I F K Sbjct: 531 KVIYS--LGIPFIGKVASKILAKASKNIDKLMTMTFEELTSIEGIGEIAANEIIAFFKKE 588 Query: 611 TSH 613 + Sbjct: 589 KNQ 591 >gi|239828008|ref|YP_002950632.1| DNA polymerase I [Geobacillus sp. WCH70] gi|239808301|gb|ACS25366.1| DNA polymerase I [Geobacillus sp. WCH70] Length = 878 Score = 43.9 bits (102), Expect = 0.074, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 6/45 (13%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG--ISKKIAC 601 + GIG LL+ FGT++ I +++ + G + + +A Sbjct: 192 GVPGIGEKTALKLLKEFGTIENI----LDSIEQVSGNKLRENLAK 232 >gi|169627665|ref|YP_001701314.1| DNA integrity scanning protein DisA [Mycobacterium abscessus ATCC 19977] gi|169239632|emb|CAM60660.1| Conserved hypothetical protein [Mycobacterium abscessus] Length = 361 Score = 43.9 bits (102), Expect = 0.074, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 23/47 (48%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616 L+++FG+++ + +S L S+EGI A I + T T Sbjct: 311 RLVRAFGSLQGLLAASATDLQSVEGIGAMWARHIREGLSRLAESTLT 357 >gi|118473616|ref|YP_890302.1| DNA integrity scanning protein DisA [Mycobacterium smegmatis str. MC2 155] gi|118174903|gb|ABK75799.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length = 372 Score = 43.9 bits (102), Expect = 0.074, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 21/37 (56%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++SFG+++ + +S + L S++GI A I Sbjct: 323 LVRSFGSLQNLLAASADDLQSVDGIGSMWARHIREGL 359 >gi|12002010|gb|AAG43148.1|AF063186_1 DNA polymerase I [Rhodococcus erythropolis] Length = 920 Score = 43.9 bits (102), Expect = 0.074, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 7/48 (14%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + G+G LL +G++ I L +++ I K+ I H Sbjct: 187 GVPGVGAKTAAKLLTEYGSIGGI-------LENVDKIKGKVGQNIKEH 227 >gi|52424881|ref|YP_088018.1| ComEA protein [Mannheimia succiniciproducens MBEL55E] gi|52306933|gb|AAU37433.1| ComEA protein [Mannheimia succiniciproducens MBEL55E] Length = 111 Score = 43.9 bits (102), Expect = 0.074, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 2/52 (3%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 L + GIG ++ + ++ V I +S L++I+GI KI + + Sbjct: 61 LQSLTGIGEVKAKAIVDYRKKVGKIKNAS--ELSNIDGIGDATIEKITPYLN 110 >gi|224023312|ref|ZP_03641678.1| hypothetical protein BACCOPRO_00005 [Bacteroides coprophilus DSM 18228] gi|224016534|gb|EEF74546.1| hypothetical protein BACCOPRO_00005 [Bacteroides coprophilus DSM 18228] Length = 753 Score = 43.9 bits (102), Expect = 0.074, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN 605 K S L + GIGP +L+++ FG T+ +I E L + GI KK KI Sbjct: 83 KYLGSGL--VKGIGPKFAQLIVRQFGLETIDVIET-DIERLYEVPGIGKKRVEKIRE 136 >gi|148553374|ref|YP_001260956.1| DNA polymerase I [Sphingomonas wittichii RW1] gi|148498564|gb|ABQ66818.1| DNA polymerase I [Sphingomonas wittichii RW1] Length = 941 Score = 43.9 bits (102), Expect = 0.074, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + GIGP L+Q FGT+ + +S + + K+ + +H Sbjct: 206 GVPGIGPKTASQLIQQFGTLDAVL-ASTDQITK-----PKLKQSLIDH 247 >gi|57233870|ref|YP_182100.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195] gi|57224318|gb|AAW39375.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195] Length = 903 Score = 43.9 bits (102), Expect = 0.074, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 2/42 (4%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 + GIGP + L++ +G ++ I + + + ++ G+ KK+A Sbjct: 196 GVPGIGPKTAQKLIEEYGGIEDIYK-NLDKISP-PGLQKKLA 235 >gi|323127660|gb|ADX24957.1| putative competence protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 220 Score = 43.9 bits (102), Expect = 0.075, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 KA L I+GIG R + +L++ ++ + + L + GI +K K+ + Sbjct: 163 KANLEELQRISGIGVKRAQDILETRDSLGGFK--TLDDLRQVSGIGEKTLEKLKHEL 217 >gi|322412122|gb|EFY03030.1| putative competence protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 220 Score = 43.9 bits (102), Expect = 0.075, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 KA L I+GIG R + +L++ ++ + + L + GI +K K+ + Sbjct: 163 KANLEELQRISGIGVKRAQDILETRDSLGGFK--TLDDLRQVSGIGEKTLEKLKHEL 217 >gi|251782856|ref|YP_002997159.1| putative competence protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391486|dbj|BAH81945.1| putative competence protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 220 Score = 43.9 bits (102), Expect = 0.075, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 KA L I+GIG R + +L++ ++ + + L + GI +K K+ + Sbjct: 163 KANLEELQRISGIGVKRAQDILETRDSLGGFK--TLDDLRQVSGIGEKTLEKLKHEL 217 >gi|196230018|ref|ZP_03128881.1| DNA repair protein RadC [Chthoniobacter flavus Ellin428] gi|196225615|gb|EDY20122.1| DNA repair protein RadC [Chthoniobacter flavus Ellin428] Length = 231 Score = 43.9 bits (102), Expect = 0.075, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 21/39 (53%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 R LL F ++ ++R S + L+ I+G+ A ++ F Sbjct: 51 RKLLAEFKSLSGLARCSVKELSKIKGVGPAKAVQLVAAF 89 >gi|307151412|ref|YP_003886796.1| DNA protecting protein DprA [Cyanothece sp. PCC 7822] gi|306981640|gb|ADN13521.1| DNA protecting protein DprA [Cyanothece sp. PCC 7822] Length = 402 Score = 43.9 bits (102), Expect = 0.075, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 28/45 (62%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 +I+GIGP+ + + Q F ++++ +S L ++EG+ K+I I Sbjct: 39 QISGIGPVLLKRIYQHFQSLEIAWSASTAELGAVEGLGKRILAAI 83 >gi|270308554|ref|YP_003330612.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS] gi|270154446|gb|ACZ62284.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS] Length = 903 Score = 43.9 bits (102), Expect = 0.075, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 2/42 (4%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 + GIGP + L++ +G ++ I + + + ++ G+ KK+A Sbjct: 196 GVPGIGPKTAQKLIEEYGGIEDIYK-NLDKISP-PGLQKKLA 235 >gi|73749074|ref|YP_308313.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1] gi|73660790|emb|CAI83397.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1] Length = 903 Score = 43.9 bits (102), Expect = 0.075, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 2/42 (4%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 + GIGP + L++ +G ++ I + + + ++ G+ KK+A Sbjct: 196 GVPGIGPKTAQKLIEEYGGIEDIYK-NLDKISP-PGLQKKLA 235 >gi|289433051|ref|YP_003462924.1| DNA polymerase I [Dehalococcoides sp. GT] gi|288946771|gb|ADC74468.1| DNA polymerase I [Dehalococcoides sp. GT] Length = 903 Score = 43.9 bits (102), Expect = 0.076, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 2/42 (4%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 + GIGP + L++ +G ++ I + + + ++ G+ KK+A Sbjct: 196 GVPGIGPKTAQKLIEEYGGIEDIYK-NLDKISP-PGLQKKLA 235 >gi|224823841|ref|ZP_03696950.1| competence protein ComEA helix-hairpin-helix repeat protein [Lutiella nitroferrum 2002] gi|224604296|gb|EEG10470.1| competence protein ComEA helix-hairpin-helix repeat protein [Lutiella nitroferrum 2002] Length = 119 Score = 43.9 bits (102), Expect = 0.076, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 14/60 (23%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A L+ +NGIGP + + ++ F + + L ++ GI K K+ Sbjct: 27 ATQQELESLNGIGPAKAKAIMDYRTKQGPFK--------TVDELKNVPGIGDKTLEKLRK 78 >gi|224070062|ref|XP_002195540.1| PREDICTED: excision repair cross-complementing rodent repair deficiency, complementation group 4 [Taeniopygia guttata] Length = 902 Score = 43.9 bits (102), Expect = 0.076, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 L ++ G+ R L+ ++ + S + L+ I G + A ++++ H Sbjct: 838 LLKMPGVNAKNCRALMTHVKSIAELVTLSKDELSKILG-NAANATQLFDFIH 888 >gi|147669839|ref|YP_001214657.1| DNA polymerase I [Dehalococcoides sp. BAV1] gi|146270787|gb|ABQ17779.1| DNA polymerase I [Dehalococcoides sp. BAV1] Length = 903 Score = 43.9 bits (102), Expect = 0.076, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 2/42 (4%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 + GIGP + L++ +G ++ I + + + ++ G+ KK+A Sbjct: 196 GVPGIGPKTAQKLIEEYGGIEDIYK-NLDKISP-PGLQKKLA 235 >gi|323341650|ref|ZP_08081883.1| DNA topoisomerase TopA [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464075|gb|EFY09268.1| DNA topoisomerase TopA [Erysipelothrix rhusiopathiae ATCC 19414] Length = 147 Score = 43.9 bits (102), Expect = 0.077, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 8/53 (15%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS---SPETLASIEGISKKIACKIYNH 606 L +I GIGP + +L+ I S E L +I+GI K+ +I + Sbjct: 97 LTQIKGIGPRKADAILKY-----RIEHEKFISVEELLNIKGIGPKLLDRIKDF 144 >gi|256750933|ref|ZP_05491817.1| Helix-hairpin-helix DNA-binding class 1 [Thermoanaerobacter ethanolicus CCSD1] gi|256750268|gb|EEU63288.1| Helix-hairpin-helix DNA-binding class 1 [Thermoanaerobacter ethanolicus CCSD1] Length = 332 Score = 43.9 bits (102), Expect = 0.077, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 5/55 (9%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603 K S L I GIGP+ R +++ FG ++ +I + PE L I+G+S + +I Sbjct: 81 KFLSSGL--IPGIGPVTARKIVKKFGVDSLNIIDTA-PERLKEIKGLSDEKIKRI 132 >gi|302148587|pdb|2KN7|A Chain A, Structure Of The Xpf-Single Strand Dna Complex gi|302148588|pdb|2KN7|D Chain D, Structure Of The Xpf-Single Strand Dna Complex Length = 67 Score = 43.9 bits (102), Expect = 0.077, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 L ++ G+ R L+ + ++ S + L SI G + A ++Y+ H + + Sbjct: 11 LLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYDFIHTSFAE 66 >gi|255291934|dbj|BAH90422.1| Holliday junction DNA helicase RuvA [uncultured bacterium] Length = 190 Score = 43.9 bits (102), Expect = 0.079, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 7/57 (12%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACK 602 +A + L +++G+GP LL G + ++++ S + L + GI KK A + Sbjct: 69 RATFRELIKVSGVGPRTALALLS--GMSAAELAQAVSAQESGRLTKVPGIGKKTAER 123 >gi|220931078|ref|YP_002507986.1| DNA ligase, NAD-dependent [Halothermothrix orenii H 168] gi|254781343|sp|B8D122|DNLJ_HALOH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|219992388|gb|ACL68991.1| DNA ligase, NAD-dependent [Halothermothrix orenii H 168] Length = 670 Score = 43.9 bits (102), Expect = 0.079, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 G+G R L + + ++ + R+S E L +I+ I IA I F + Sbjct: 516 GLGVARV--LTEKYRSLSDLMRASGEELVAIDEIGPTIARSIIEFFKE 561 >gi|329942438|ref|ZP_08291248.1| holliday junction DNA helicase RuvA [Chlamydophila psittaci Cal10] gi|332287079|ref|YP_004421980.1| holliday junction DNA helicase [Chlamydophila psittaci 6BC] gi|325507386|gb|ADZ19024.1| holliday junction DNA helicase [Chlamydophila psittaci 6BC] gi|328815348|gb|EGF85336.1| holliday junction DNA helicase RuvA [Chlamydophila psittaci Cal10] gi|328914313|gb|AEB55146.1| Holliday junction DNA helicase RuvA [Chlamydophila psittaci 6BC] Length = 207 Score = 43.9 bits (102), Expect = 0.079, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%) Query: 562 GIGPLRKRLLLQSFGTVKM---ISRS-SPETLASIEGISKKIACKI 603 G+GP +L +F ++ I+R+ + +AS+ GI KK A K+ Sbjct: 81 GVGPKTGLAILNTF-SLSKLCSIARAEDIKAIASVPGIGKKTAEKL 125 >gi|313847675|emb|CBY16663.1| putative holliday junction DNA helicase RuvA [Chlamydophila psittaci RD1] Length = 222 Score = 43.9 bits (102), Expect = 0.079, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%) Query: 562 GIGPLRKRLLLQSFGTVKM---ISRS-SPETLASIEGISKKIACKI 603 G+GP +L +F ++ I+R+ + +AS+ GI KK A K+ Sbjct: 96 GVGPKTGLAILNTF-SLSKLCSIARAEDIKAIASVPGIGKKTAEKL 140 >gi|221632593|ref|YP_002521814.1| PHP domain-containing protein [Thermomicrobium roseum DSM 5159] gi|221156427|gb|ACM05554.1| PHP domain protein [Thermomicrobium roseum DSM 5159] Length = 581 Score = 43.9 bits (102), Expect = 0.079, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%) Query: 557 LDEINGIGPLRKRLLLQSFG--TVKMISRSSPE-TLASIEGISKKIACKI 603 L E+ GIGP R LL + G T++ + +++ E L + G +K+ +I Sbjct: 94 LLEVPGIGPARAHLLYEQLGITTIQDLLQAAQEHKLRKLPGFGEKLEERI 143 Score = 38.9 bits (89), Expect = 2.3, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 12/66 (18%) Query: 552 AAYSPLDEINGIGPLRKRLL--------LQSFGTVKMISRSSPE--TLASIEGISKKIAC 601 A LDEI G+G + L+ + +K + L + GI A Sbjct: 49 ARQGKLDEIPGVGKAIAAKIEEYLRTGRLEYYEQLK--REVPLQAVDLLEVPGIGPARAH 106 Query: 602 KIYNHF 607 +Y Sbjct: 107 LLYEQL 112 >gi|168830347|gb|ACA34443.1| Exo [uncultured bacterium pTW3] Length = 306 Score = 43.9 bits (102), Expect = 0.079, Method: Composition-based stats. Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 1/31 (3%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETL 589 + GIG +LL FG++ + + + + Sbjct: 195 GVPGIGAKTAAVLLAHFGSLDALL-ARIDEI 224 >gi|30249435|ref|NP_841505.1| DNA repair protein RadC [Nitrosomonas europaea ATCC 19718] gi|54036235|sp|Q82UL9|Y1464_NITEU RecName: Full=UPF0758 protein NE1464 gi|30138798|emb|CAD85375.1| DNA repair protein radC family [Nitrosomonas europaea ATCC 19718] Length = 224 Score = 43.9 bits (102), Expect = 0.080, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 1/41 (2%) Query: 559 EINGIGPL-RKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 I G+ + R LL FG++ + +S + + G+ Sbjct: 37 GITGVSAVELARKLLTHFGSLTKLCAASLHEFSELPGMGPA 77 >gi|34764322|ref|ZP_00145154.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27885904|gb|EAA23248.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 455 Score = 43.9 bits (102), Expect = 0.080, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 25/55 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I IG + ++L ++ + + + E L SIEGI A +I F K + Sbjct: 349 GIAEIGKVTSKILAKASKNIDKLMNMTFEELTSIEGIGXIAANEIIAFFKKEKNQ 403 >gi|108801706|ref|YP_641903.1| DNA integrity scanning protein DisA [Mycobacterium sp. MCS] gi|119870857|ref|YP_940809.1| DNA integrity scanning protein DisA [Mycobacterium sp. KMS] gi|126437693|ref|YP_001073384.1| DNA integrity scanning protein DisA [Mycobacterium sp. JLS] gi|108772125|gb|ABG10847.1| protein of unknown function DUF147 [Mycobacterium sp. MCS] gi|119696946|gb|ABL94019.1| protein of unknown function DUF147 [Mycobacterium sp. KMS] gi|126237493|gb|ABO00894.1| protein of unknown function DUF147 [Mycobacterium sp. JLS] Length = 371 Score = 43.9 bits (102), Expect = 0.081, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 21/37 (56%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++SFG+++ + +S + L S+EGI A I Sbjct: 322 LVRSFGSLQGLLAASADDLQSVEGIGSMWARHIREGL 358 >gi|271970312|ref|YP_003344508.1| DNA integrity scanning protein DisA [Streptosporangium roseum DSM 43021] gi|270513487|gb|ACZ91765.1| DNA integrity scanning protein DisA [Streptosporangium roseum DSM 43021] Length = 361 Score = 43.9 bits (102), Expect = 0.082, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 17/38 (44%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L+ FG+++ + +S L + G+ + A I Sbjct: 311 RLVDQFGSLQKLLAASIGDLQEVGGVGEARARHIREGL 348 >gi|225870290|ref|YP_002746237.1| DNA ligase [Streptococcus equi subsp. equi 4047] gi|254781420|sp|C0M6L2|DNLJ_STRE4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|225699694|emb|CAW93413.1| DNA ligase [Streptococcus equi subsp. equi 4047] Length = 652 Score = 43.9 bits (102), Expect = 0.082, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 28/56 (50%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I IG RL+L+++G ++ + + E LA I+G+ I + +F + + Sbjct: 502 GIRHIGAKASRLILEAYGDLEALLAVTAEELAQIDGLGLVIGQSLVQYFQQEQAAQ 557 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 6/60 (10%) Query: 559 EINGIGPLRKRLL----LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I G+GP L L V I R S E L +++GI +K A K+ ++ +++ Sbjct: 436 NIAGLGPAVVEKLYSAGLVH--DVADIYRLSLEDLLTLDGIKEKSAEKLLAAIEQSKANS 493 >gi|289581501|ref|YP_003479967.1| DNA repair and recombination protein RadA [Natrialba magadii ATCC 43099] gi|289531054|gb|ADD05405.1| DNA repair and recombination protein RadA [Natrialba magadii ATCC 43099] Length = 343 Score = 43.9 bits (102), Expect = 0.082, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 5/53 (9%) Query: 557 LDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYNH 606 L+ + G+GP L F + + ++ +SP L++ + + A I N Sbjct: 6 LETLPGVGPATADKL--HDAGFDSFQSLAVASPSELSNTADVGESTAADIVNA 56 >gi|85544012|pdb|1Z00|B Chain B, Solution Structure Of The C-Terminal Domain Of Ercc1 Complexed With The C-Terminal Domain Of Xpf gi|116666732|pdb|2AQ0|A Chain A, Solution Structure Of The Human Homodimeric Dna Repair Protein Xpf gi|116666733|pdb|2AQ0|B Chain B, Solution Structure Of The Human Homodimeric Dna Repair Protein Xpf Length = 84 Score = 43.9 bits (102), Expect = 0.082, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 L ++ G+ R L+ + ++ S + L SI G + A ++Y+ H + + Sbjct: 20 LLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYDFIHTSFAE 75 >gi|290973391|ref|XP_002669432.1| predicted protein [Naegleria gruberi] gi|284082979|gb|EFC36688.1| predicted protein [Naegleria gruberi] Length = 597 Score = 43.9 bits (102), Expect = 0.083, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 21/38 (55%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 LL FG++K + +++ + L + G KK K+ N F Sbjct: 474 LLNHFGSLKEVIQTTSDELNDLPGFGKKKVKKLINLFQ 511 >gi|261379141|ref|ZP_05983714.1| DNA topoisomerase [Neisseria cinerea ATCC 14685] gi|269144414|gb|EEZ70832.1| DNA topoisomerase [Neisseria cinerea ATCC 14685] Length = 96 Score = 43.9 bits (102), Expect = 0.083, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + +++ F +V + L ++GI + K+ + Sbjct: 27 ELEALPGIGPAKAKAIVEYRAQNGAFKSV--------DELTKVKGIGPAVLAKLKD 74 Score = 37.8 bits (86), Expect = 4.9, Method: Composition-based stats. Identities = 6/27 (22%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 ++ +S + L ++ GI A I + Sbjct: 19 NVNAASQQELEALPGIGPAKAKAIVEY 45 >gi|261378489|ref|ZP_05983062.1| DNA topoisomerase [Neisseria cinerea ATCC 14685] gi|261379152|ref|ZP_05983725.1| DNA topoisomerase [Neisseria cinerea ATCC 14685] gi|269144381|gb|EEZ70799.1| DNA topoisomerase [Neisseria cinerea ATCC 14685] gi|269145289|gb|EEZ71707.1| DNA topoisomerase [Neisseria cinerea ATCC 14685] Length = 99 Score = 43.9 bits (102), Expect = 0.083, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + +++ F +V + L ++GI + K+ + Sbjct: 30 ELEALPGIGPAKAKAIVEYRAQNGAFKSV--------DELTKVKGIGPAVLAKLKD 77 Score = 37.8 bits (86), Expect = 4.9, Method: Composition-based stats. Identities = 6/27 (22%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 ++ +S + L ++ GI A I + Sbjct: 22 NVNAASQQELEALPGIGPAKAKAIVEY 48 >gi|257052349|ref|YP_003130182.1| DNA repair and recombination protein RadA [Halorhabdus utahensis DSM 12940] gi|256691112|gb|ACV11449.1| DNA repair and recombination protein RadA [Halorhabdus utahensis DSM 12940] Length = 348 Score = 43.9 bits (102), Expect = 0.083, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 L+++ G+GP L ++ + + + I+ +SP L++ + + A I + Sbjct: 7 LEDLPGVGPATAEKLTENGYDSYQGIAVASPGELSNTADVGESSAADIIQAAREAAD 63 >gi|109157521|pdb|2F1H|A Chain A, Recombinase In Complex With Amp-Pnp And Potassium gi|109157522|pdb|2F1I|A Chain A, Recombinase In Complex With Amp-Pnp gi|109157523|pdb|2F1J|A Chain A, Recombinase In Complex With Adp Length = 322 Score = 43.9 bits (102), Expect = 0.083, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACK 602 L ++ G+GP L+++ + I+ ++ L IEGIS+K A K Sbjct: 5 LTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAK 51 >gi|52695616|pdb|1T4G|A Chain A, Atpase In Complex With Amp-Pnp gi|56967254|pdb|1XU4|A Chain A, Atpase In Complex With Amp-Pnp, Magnesium And Potassium Co-F gi|88193103|pdb|2FPK|A Chain A, Rada Recombinase In Complex With Adp gi|88193104|pdb|2FPL|A Chain A, Rada Recombinase In Complex With Amp-Pnp And Low Concentration Of K+ gi|88193105|pdb|2FPM|A Chain A, Rada Recombinase In Complex With Amp-Pnp And High Concentration Of K+ gi|114793501|pdb|2B21|A Chain A, Rada Recombinase In Complex With Amppnp At Ph 6.0 gi|118138042|pdb|2I1Q|A Chain A, Rada Recombinase In Complex With Calcium gi|257097225|pdb|3FYH|A Chain A, Recombinase In Complex With Adp And Metatungstate Length = 322 Score = 43.9 bits (102), Expect = 0.083, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACK 602 L ++ G+GP L+++ + I+ ++ L IEGIS+K A K Sbjct: 5 LTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAK 51 >gi|13878668|sp|O73948|RADA_METVO RecName: Full=DNA repair and recombination protein radA gi|3219351|gb|AAC23499.1| RadA [Methanococcus voltae PS] Length = 322 Score = 43.9 bits (102), Expect = 0.083, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACK 602 L ++ G+GP L+++ + I+ ++ L IEGIS+K A K Sbjct: 5 LTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAK 51 >gi|322513419|ref|ZP_08066534.1| competence protein ComEA [Actinobacillus ureae ATCC 25976] gi|322120775|gb|EFX92648.1| competence protein ComEA [Actinobacillus ureae ATCC 25976] Length = 191 Score = 43.9 bits (102), Expect = 0.083, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L I+GIG ++ + ++ V I + L++I GI + K+ + Sbjct: 141 LQTISGIGEVKAQAIIDYRNKVGKIKNA--AELSNISGIGEATIQKVVPYL 189 >gi|294617319|ref|ZP_06696959.1| DNA repair protein RadC [Enterococcus faecium E1679] gi|291596428|gb|EFF27681.1| DNA repair protein RadC [Enterococcus faecium E1679] Length = 187 Score = 43.9 bits (102), Expect = 0.083, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 19/36 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 LL++FG + + +++ L I GI + A +I Sbjct: 52 NLLKTFGGLASLRQATLHELEEIRGIGRVKAIEIKA 87 >gi|226329884|ref|ZP_03805402.1| hypothetical protein PROPEN_03797 [Proteus penneri ATCC 35198] gi|225200679|gb|EEG83033.1| hypothetical protein PROPEN_03797 [Proteus penneri ATCC 35198] Length = 206 Score = 43.9 bits (102), Expect = 0.084, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 7/62 (11%) Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIAC 601 +++++A + L ++NG+GP +L + F V I S +L + G+ KK A Sbjct: 66 QKQERALFRELIKVNGVGPKLALAILSGMSARQF--VTAIENESISSLVKLPGVGKKTAE 123 Query: 602 KI 603 ++ Sbjct: 124 RL 125 >gi|197284986|ref|YP_002150858.1| Holliday junction DNA helicase RuvA [Proteus mirabilis HI4320] gi|227355390|ref|ZP_03839791.1| Holliday junction ATP-dependent DNA helicase [Proteus mirabilis ATCC 29906] gi|229560118|sp|B4ETP7|RUVA_PROMH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|194682473|emb|CAR42407.1| Holliday junction ATP-dependent DNA helicase [Proteus mirabilis HI4320] gi|227164614|gb|EEI49485.1| Holliday junction ATP-dependent DNA helicase [Proteus mirabilis ATCC 29906] Length = 207 Score = 43.9 bits (102), Expect = 0.084, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 7/62 (11%) Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIAC 601 +++++A + L ++NG+GP +L + F V I S +L + G+ KK A Sbjct: 66 QKQERALFRELIKVNGVGPKLALAILSGMSARQF--VTAIENESISSLVKLPGVGKKTAE 123 Query: 602 KI 603 ++ Sbjct: 124 RL 125 >gi|270308617|ref|YP_003330675.1| DNA repair protein [Dehalococcoides sp. VS] gi|270154509|gb|ACZ62347.1| DNA repair protein [Dehalococcoides sp. VS] Length = 275 Score = 43.9 bits (102), Expect = 0.084, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 16/72 (22%) Query: 542 ITTHRKR-RKKAAYSPLDEING---------IGPLRK------RLLLQSFGTVKMISRSS 585 HR+R R++ + LD +N +G R+ + ++ FG+++ + +S Sbjct: 23 NAGHRQRLRERFLKAGLDGLNDYEVVELLLTLGTPRRDCKQAAKEAIKHFGSLRAVLEAS 82 Query: 586 PETLASIEGISK 597 P L SI+GI + Sbjct: 83 PAELLSIKGIGE 94 >gi|304314962|ref|YP_003850109.1| helicase [Methanothermobacter marburgensis str. Marburg] gi|302588421|gb|ADL58796.1| predicted helicase [Methanothermobacter marburgensis str. Marburg] Length = 693 Score = 43.9 bits (102), Expect = 0.085, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 2/48 (4%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + G+G +R R ++++FG + + + L I+GI +K+A I + Sbjct: 641 GVRGLGRVRARKIVETFG--EDLRHVRKDELKRIDGIGEKLAEAIRGY 686 >gi|75812524|ref|YP_320143.1| helicase RecD/TraA [Anabaena variabilis ATCC 29413] gi|75705280|gb|ABA24954.1| Helicase RecD/TraA [Anabaena variabilis ATCC 29413] Length = 749 Score = 43.9 bits (102), Expect = 0.085, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 5/58 (8%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH 606 K S L I G+GP+ R ++ FG T+ +I + L ++GI+KK I N Sbjct: 98 KYLGSGL--IKGVGPVTARRIVAHFGLETLDIIEN-QIDRLIEVQGIAKKRIKLIKNA 152 >gi|17233087|ref|NP_490177.1| exodeoxyribonuclease V, alpha chain [Nostoc sp. PCC 7120] gi|17135609|dbj|BAB78155.1| exodeoxyribonuclease V, alpha chain [Nostoc sp. PCC 7120] Length = 748 Score = 43.9 bits (102), Expect = 0.085, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 5/58 (8%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH 606 K S L I G+GP+ R ++ FG T+ +I + L ++GI+KK I N Sbjct: 98 KYLGSGL--IKGVGPVTARRIVAHFGLETLDIIEN-QIDRLIEVQGIAKKRIKLIKNA 152 >gi|148358122|ref|YP_001249324.1| GIY endonuclease [Gibberella zeae] gi|86142521|gb|ABC86636.1| GIY endonuclease [Gibberella zeae] Length = 335 Score = 43.9 bits (102), Expect = 0.086, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 12/88 (13%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC------ 64 GVY + YVG + NL RI SY + + ++ N F T Sbjct: 83 GVYVW--ESNDHAYVGHSINLYNRISSYFMPSILQTKARRVLRYFNKHGFQDTNLTIYIM 140 Query: 65 TEVEAL----LLEANMIKRLKPRFNILL 88 E +L LE + I LKP N+ L Sbjct: 141 DENSSLDDVVSLEQHFIDTLKPSLNVDL 168 >gi|218960602|ref|YP_001740377.1| transcription elongation factor NusA [Candidatus Cloacamonas acidaminovorans] gi|167729259|emb|CAO80170.1| transcription elongation factor NusA [Candidatus Cloacamonas acidaminovorans] Length = 411 Score = 43.9 bits (102), Expect = 0.086, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + S + E++G+ P L Q+ + +V+ I +S E L ++EG+ +K A ++ Sbjct: 351 RRTVSHITELDGVTPKIAETLKQAGYTSVQDIYTASLEELCNLEGMGQKTAERLKEA 407 >gi|52550007|gb|AAU83856.1| recombinase [uncultured archaeon GZfos34G5] Length = 315 Score = 43.9 bits (102), Expect = 0.086, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 558 DEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606 +E+ G+GP L ++ F +++ I+ +SP L + I + + KI N Sbjct: 4 EELPGVGPAIAEKLREAGFNSLEAIAVASPAELVAAAEIGEATSAKIINA 53 >gi|51894262|ref|YP_076953.1| DNA integrity scanning protein DisA [Symbiobacterium thermophilum IAM 14863] gi|81387914|sp|Q67JP1|DISA_SYMTH RecName: Full=DNA integrity scanning protein disA gi|51857951|dbj|BAD42109.1| putative nucleic-acid-binding protein [Symbiobacterium thermophilum IAM 14863] Length = 351 Score = 43.9 bits (102), Expect = 0.086, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 19/42 (45%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L+ FG ++ + +S E L +EGI + A I + Sbjct: 299 IENLVARFGRLQRVLAASLEELDDVEGIGEVRARAIQEGLRR 340 >gi|328954004|ref|YP_004371338.1| DNA repair protein RadC [Desulfobacca acetoxidans DSM 11109] gi|328454328|gb|AEB10157.1| DNA repair protein RadC [Desulfobacca acetoxidans DSM 11109] Length = 230 Score = 43.9 bits (102), Expect = 0.087, Method: Composition-based stats. Identities = 9/35 (25%), Positives = 18/35 (51%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 + LL FG+ + +S + L ++G+ + A I Sbjct: 54 KGLLSHFGSFAEVLDASHQELVKVKGLGEYSATLI 88 >gi|313884718|ref|ZP_07818474.1| comEA protein [Eremococcus coleocola ACS-139-V-Col8] gi|312620086|gb|EFR31519.1| comEA protein [Eremococcus coleocola ACS-139-V-Col8] Length = 241 Score = 43.9 bits (102), Expect = 0.087, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 8/46 (17%) Query: 557 LDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKI 599 L + IGP + ++ G+ + S E L + GI KK Sbjct: 191 LQTLPNIGPKKAEAIINYRQEIGSFQ-----SVEELIQVPGIGKKT 231 >gi|260495084|ref|ZP_05815213.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_33] gi|260197527|gb|EEW95045.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_33] Length = 696 Score = 43.9 bits (102), Expect = 0.087, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 26/55 (47%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I IG + ++L ++ + + + E L SI+GI + A +I F K + Sbjct: 537 GIAEIGKVTSKILAKASKNIDKLMTMTFEELTSIDGIGEIAANEIIAFFKKEKNQ 591 >gi|195149698|ref|XP_002015793.1| GL11250 [Drosophila persimilis] gi|194109640|gb|EDW31683.1| GL11250 [Drosophila persimilis] Length = 260 Score = 43.9 bits (102), Expect = 0.087, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 25/54 (46%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L I + LLQ+FG + + +S E L+ + G+ + A +++ + Sbjct: 202 ALTNIKPVNKTDAVTLLQTFGNLGNVITASEERLSQVMGLGPRKAKRLFKTLQE 255 >gi|159038912|ref|YP_001538165.1| DNA polymerase I [Salinispora arenicola CNS-205] gi|157917747|gb|ABV99174.1| DNA polymerase I [Salinispora arenicola CNS-205] Length = 899 Score = 43.9 bits (102), Expect = 0.087, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS--KKIACKIYNH 606 L I G+GP + ++G V+ I + + + G++ +++A I NH Sbjct: 195 LPGIPGVGPKTAAKWITTYGGVEGI-VARADEIKGKAGVNLRERLADVIRNH 245 >gi|71418519|ref|XP_810877.1| DNA repair protein [Trypanosoma cruzi strain CL Brener] gi|70875476|gb|EAN89026.1| DNA repair protein, putative [Trypanosoma cruzi] Length = 269 Score = 43.9 bits (102), Expect = 0.087, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 19/36 (52%) Query: 573 QSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 +G+V + +S E L S+ G K A +++N H Sbjct: 176 HRYGSVAELLTASLEDLTSLPGFGPKRAGRLHNVLH 211 >gi|125807281|ref|XP_001360338.1| GA10163 [Drosophila pseudoobscura pseudoobscura] gi|54635510|gb|EAL24913.1| GA10163 [Drosophila pseudoobscura pseudoobscura] Length = 260 Score = 43.9 bits (102), Expect = 0.087, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 25/54 (46%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L I + LLQ+FG + + +S E L+ + G+ + A +++ + Sbjct: 202 ALTNIKPVNKTDAVTLLQTFGNLGNVITASEERLSQVMGLGPRKAKRLFKTLQE 255 >gi|329765876|ref|ZP_08257442.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137719|gb|EGG41989.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 709 Score = 43.9 bits (102), Expect = 0.088, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 7/70 (10%) Query: 547 KRRKKAAYSP----LD--EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKI 599 R++ Y LD ++ GIG +R R+L + T+ ++ LA I+ I I Sbjct: 637 NLRRRITYGIREELLDLVKVKGIGRIRARMLYKHGIKTLDDLANIPVNKLAEIDKIGSTI 696 Query: 600 ACKIYNHFHK 609 A I + K Sbjct: 697 ADNIKSELRK 706 >gi|304316781|ref|YP_003851926.1| hypothetical protein Tthe_1328 [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778283|gb|ADL68842.1| conserved hypothetical protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 386 Score = 43.9 bits (102), Expect = 0.088, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 3/52 (5%) Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNH 606 PL+ I GIG + + L G+ + ++ + E L I +K+A I + Sbjct: 318 PLEFIPGIGSITMKKLFNEVGSEIYILHEAPFEQLKEC--IGEKLAKNIIDA 367 >gi|86605509|ref|YP_474272.1| DNA ligase, NAD-dependent [Synechococcus sp. JA-3-3Ab] gi|123765626|sp|Q2JW63|DNLJ_SYNJA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|86554051|gb|ABC99009.1| DNA ligase, NAD-dependent [Synechococcus sp. JA-3-3Ab] Length = 673 Score = 43.9 bits (102), Expect = 0.088, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G + ++L Q F ++++++ E +A I GI +IA + F Sbjct: 520 GIPHVGVVTAQILAQHFPAPELLAQARAEDIAQIYGIGAEIAEAVVAWF 568 Score = 41.6 bits (96), Expect = 0.35, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Query: 559 EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +I G+G R L++ G TV + R +PE L S+EG+ + + K+ ++ Sbjct: 454 DIEGLGEKRVAQLVEKLGVRTVADLYRLTPEHLESLEGMGSRSSQKLVQAIQRSRQQP 511 >gi|319947366|ref|ZP_08021599.1| competence protein CelA [Streptococcus australis ATCC 700641] gi|319746608|gb|EFV98868.1| competence protein CelA [Streptococcus australis ATCC 700641] Length = 260 Score = 43.9 bits (102), Expect = 0.088, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 A + L I+GIG R + ++ S + L ++ GI +K K+ H Sbjct: 204 ATEAELQTISGIGQKRAQDIIAYREGKGKFQ--SVDELKNVSGIGQKTLEKLKEH 256 >gi|311104975|ref|YP_003977828.1| DNA repair protein RadC 2 [Achromobacter xylosoxidans A8] gi|310759664|gb|ADP15113.1| DNA repair protein RadC 2 [Achromobacter xylosoxidans A8] Length = 225 Score = 43.9 bits (102), Expect = 0.088, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 9/47 (19%) Query: 559 EINGI-----GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 I G+ G LL FG ++ + ++PE L ++ G+ A Sbjct: 38 GIPGLDVVQLGS----QLLARFGGLRGLLGATPEELTAVPGLGAAKA 80 >gi|256028750|ref|ZP_05442584.1| preprotein translocase subunit SecA [Fusobacterium sp. D11] gi|289766653|ref|ZP_06526031.1| NAD-dependent DNA ligase [Fusobacterium sp. D11] gi|289718208|gb|EFD82220.1| NAD-dependent DNA ligase [Fusobacterium sp. D11] Length = 696 Score = 43.9 bits (102), Expect = 0.088, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 26/55 (47%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I IG + ++L ++ + + + E L SI+GI + A +I F K + Sbjct: 537 GIAEIGKVTSKILAKASKNIDKLMTMTFEELTSIDGIGEIAANEIIAFFKKEKNQ 591 >gi|119605524|gb|EAW85118.1| excision repair cross-complementing rodent repair deficiency, complementation group 4, isoform CRA_b [Homo sapiens] Length = 897 Score = 43.9 bits (102), Expect = 0.089, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 L ++ G+ R L+ + ++ S + L SI G + A ++Y+ H + + Sbjct: 833 LLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYDFIHTSFAE 888 >gi|329929819|ref|ZP_08283495.1| TIGR00375 family protein [Paenibacillus sp. HGF5] gi|328935797|gb|EGG32258.1| TIGR00375 family protein [Paenibacillus sp. HGF5] Length = 404 Score = 43.6 bits (101), Expect = 0.090, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMIS-RSSPETLASIEGISKKIACKI 603 PL+ I G+G LL +FGT I +++ LA++ G + +A I Sbjct: 335 PLEFIPGLGKSSMSKLLDAFGTEMNILHQATEAELAAVAG--EGLAASI 381 >gi|255004103|ref|ZP_05278904.1| excinuclease ABC subunit C (uvrC) [Anaplasma marginale str. Virginia] Length = 34 Score = 43.6 bits (101), Expect = 0.090, Method: Composition-based stats. Identities = 8/34 (23%), Positives = 19/34 (55%) Query: 581 ISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 + R+ + ++ + GIS K+A +IY + + + Sbjct: 1 MKRARTDEISKVPGISIKLAQRIYAYLKQGMAQP 34 >gi|261405981|ref|YP_003242222.1| hypothetical protein GYMC10_2134 [Paenibacillus sp. Y412MC10] gi|261282444|gb|ACX64415.1| conserved hypothetical protein [Paenibacillus sp. Y412MC10] Length = 404 Score = 43.6 bits (101), Expect = 0.090, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMIS-RSSPETLASIEGISKKIACKI 603 PL+ I G+G LL +FGT I +++ LA++ G + +A I Sbjct: 335 PLEFIPGLGKSSMSKLLDAFGTEMNILHQATEAELAAVAG--EGLAASI 381 >gi|168187709|ref|ZP_02622344.1| DNA integrity scanning protein DisA [Clostridium botulinum C str. Eklund] gi|169294434|gb|EDS76567.1| DNA integrity scanning protein DisA [Clostridium botulinum C str. Eklund] Length = 355 Score = 43.6 bits (101), Expect = 0.090, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 18/35 (51%) Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 F +K + +S E L ++EGI + A I N + Sbjct: 310 FKELKEVMEASYEELDNVEGIGEARAKAIKNGLRR 344 >gi|167461185|ref|ZP_02326274.1| YqxK [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381744|ref|ZP_08055698.1| hypothetical protein PL1_0444 [Paenibacillus larvae subsp. larvae B-3650] gi|321154132|gb|EFX46454.1| hypothetical protein PL1_0444 [Paenibacillus larvae subsp. larvae B-3650] Length = 397 Score = 43.6 bits (101), Expect = 0.090, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMIS-RSSPETLASIEGISKKIACKIY 604 PL+ I G+G + LL FGT I + + L + G + IA I+ Sbjct: 324 PLEFIPGLGKRKMAALLNHFGTEMNILHEAREQDLVHVAG--QDIAHMIH 371 >gi|159027634|emb|CAO87006.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 382 Score = 43.6 bits (101), Expect = 0.090, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 21/40 (52%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 I G+G + + L Q FG+V + ++ +A + G KK Sbjct: 13 SIAGVGAISLKRLYQHFGSVAVAWNATDSAIAEVAGFGKK 52 >gi|303238350|ref|ZP_07324885.1| DNA integrity scanning, DisA, linker region [Acetivibrio cellulolyticus CD2] gi|302594054|gb|EFL63767.1| DNA integrity scanning, DisA, linker region [Acetivibrio cellulolyticus CD2] Length = 360 Score = 43.6 bits (101), Expect = 0.091, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 22/53 (41%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L +I + + L+ F + I ++ + L +EGI + A I + Sbjct: 296 LSKIPRVPLTIIKNLVDRFLNFQGIINATIDELDEVEGIGEVRARMIKEGLRR 348 >gi|317129905|ref|YP_004096187.1| DNA polymerase I [Bacillus cellulosilyticus DSM 2522] gi|315474853|gb|ADU31456.1| DNA polymerase I [Bacillus cellulosilyticus DSM 2522] Length = 874 Score = 43.6 bits (101), Expect = 0.091, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 10/56 (17%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 + G+G LL+ FGTV+ + E+L + G K+ +N + Sbjct: 191 GVPGVGEKTALKLLKQFGTVEKLY----ESLEDVSG------KKLKEKLAENKDNA 236 >gi|251811006|ref|ZP_04825479.1| competence protein comEA [Staphylococcus epidermidis BCM-HMP0060] gi|251805516|gb|EES58173.1| competence protein comEA [Staphylococcus epidermidis BCM-HMP0060] Length = 224 Score = 43.6 bits (101), Expect = 0.091, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A L I GIGP + + +L F ++ + L I+G KK K+ Sbjct: 169 ATEEQLKNIPGIGPSKAKEILNYREQNHGFNSI--------DDLMKIKGFGKKTFEKLKE 220 Query: 606 HF 607 HF Sbjct: 221 HF 222 >gi|218248480|ref|YP_002373851.1| Excinuclease ABC subunit C domain-containing protein [Cyanothece sp. PCC 8801] gi|218168958|gb|ACK67695.1| Excinuclease ABC C subunit domain protein [Cyanothece sp. PCC 8801] Length = 348 Score = 43.6 bits (101), Expect = 0.091, Method: Composition-based stats. Identities = 14/31 (45%), Positives = 21/31 (67%) Query: 4 EQMPECPGVYQMLDIAGRVLYVGKAYNLQKR 34 +Q+P G+Y +LD + V Y+G+A NLQ R Sbjct: 20 DQLPSSSGIYYVLDESNIVWYIGQAKNLQSR 50 >gi|157363654|ref|YP_001470421.1| DNA integrity scanning protein DisA [Thermotoga lettingae TMO] gi|157314258|gb|ABV33357.1| protein of unknown function DUF147 [Thermotoga lettingae TMO] Length = 350 Score = 43.6 bits (101), Expect = 0.091, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 21/31 (67%) Query: 573 QSFGTVKMISRSSPETLASIEGISKKIACKI 603 ++F +K+IS +S + L S++GI +K A I Sbjct: 308 KTFKNLKIISEASIDELQSVDGIGEKRALAI 338 >gi|29839888|ref|NP_828994.1| Holliday junction DNA helicase motor protein [Chlamydophila caviae GPIC] gi|33301629|sp|Q824M5|RUVA_CHLCV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|29834235|gb|AAP04872.1| Holliday junction DNA helicase RuvA [Chlamydophila caviae GPIC] Length = 207 Score = 43.6 bits (101), Expect = 0.091, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%) Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKM---ISRS-SPETLASIEGISKKIACK 602 RR++ + L +G+GP +L +F ++ I+R+ +AS+ GI KK A K Sbjct: 66 SRRERECFRMLISFSGVGPKTGLAILNTF-SLSKLCSIARAEDVRAIASVPGIGKKTAEK 124 Query: 603 I 603 + Sbjct: 125 L 125 >gi|283953656|ref|ZP_06371187.1| competence protein ComEA [Campylobacter jejuni subsp. jejuni 414] gi|283794697|gb|EFC33435.1| competence protein ComEA [Campylobacter jejuni subsp. jejuni 414] Length = 79 Score = 43.6 bits (101), Expect = 0.091, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 9/57 (15%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS---SPETLASIEGISKKIACKIYN 605 A L +NGIG + + +L+ + S + + ++GI K+ KI N Sbjct: 24 ATLKELKGLNGIGEAKAKAILEY------RKEANFTSIDDIKKVQGIGDKLFEKIKN 74 >gi|299822871|ref|ZP_07054757.1| competence protein CelA [Listeria grayi DSM 20601] gi|299816400|gb|EFI83638.1| competence protein CelA [Listeria grayi DSM 20601] Length = 198 Score = 43.6 bits (101), Expect = 0.091, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 61/184 (33%), Gaps = 42/184 (22%) Query: 429 AMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNV 488 A + + ++ + ++ Q D+V L GG Q + + + + Sbjct: 49 AAESETPKSSKTIVVDIKGAVSKPGVYQVAKDARVQDLVHLAGGVNQTADMKQINLAAKL 108 Query: 489 ENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKR 548 ++ +I IAK + + + +K + + +N +Q Sbjct: 109 KDEESIY-IAKIGEIAEQTDTDKQRKDDTVNINTAS-----LQ----------------- 145 Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS-----PETLASIEGISKKIACKI 603 L I G+GP + + +L+ S+ E L +I G +K ++ Sbjct: 146 -------ELQGIPGVGPAKAQAILEY-------RESTGLFQKVEDLKNISGFGEKTIERL 191 Query: 604 YNHF 607 N Sbjct: 192 KNFI 195 >gi|225573022|ref|ZP_03781777.1| hypothetical protein RUMHYD_01213 [Blautia hydrogenotrophica DSM 10507] gi|225039619|gb|EEG49865.1| hypothetical protein RUMHYD_01213 [Blautia hydrogenotrophica DSM 10507] Length = 742 Score = 43.6 bits (101), Expect = 0.092, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 3/46 (6%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603 I GIGP +++ FG TV+++ PE L+ ++GIS+K A +I Sbjct: 89 IKGIGPALAARIVKKFGEETVRIVEE-EPERLSEVKGISEKKAQEI 133 >gi|307152955|ref|YP_003888339.1| NAD-dependent DNA ligase [Cyanothece sp. PCC 7822] gi|306983183|gb|ADN15064.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7822] Length = 682 Score = 43.6 bits (101), Expect = 0.092, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 30/52 (57%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G + ++L +F TV+ +SR+S +L S+ GI +IA + + F + T Sbjct: 525 VGNVTAKILTDNFPTVEQLSRASFASLESVYGIGSEIAQSVSDWFKIEANLT 576 >gi|27468194|ref|NP_764831.1| hypothetical protein SE1276 [Staphylococcus epidermidis ATCC 12228] gi|57867052|ref|YP_188733.1| comE operon protein 1 [Staphylococcus epidermidis RP62A] gi|27315740|gb|AAO04875.1|AE016748_109 ComEA [Staphylococcus epidermidis ATCC 12228] gi|57637710|gb|AAW54498.1| comE operon protein 1, putative [Staphylococcus epidermidis RP62A] Length = 224 Score = 43.6 bits (101), Expect = 0.092, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A L I GIGP + + +L F ++ + L I+G KK K+ Sbjct: 169 ATEEQLKNIPGIGPSKAKEILNYREQNHGFNSI--------DDLMKIKGFGKKTFEKLKE 220 Query: 606 HF 607 HF Sbjct: 221 HF 222 >gi|315641089|ref|ZP_07896168.1| NAD-dependent DNA ligase LigA [Enterococcus italicus DSM 15952] gi|315483097|gb|EFU73614.1| NAD-dependent DNA ligase LigA [Enterococcus italicus DSM 15952] Length = 671 Score = 43.6 bits (101), Expect = 0.093, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 6/66 (9%) Query: 552 AAYSPLDE------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 + + L++ I +G +LL + F T+ +S+++ E + ++ I IA + Sbjct: 497 SKQNSLEKLLFGLGIRHVGVKAAKLLAERFETLTQLSQATVEEILTVATIGPTIADSLVT 556 Query: 606 HFHKNT 611 +F Sbjct: 557 YFANEE 562 >gi|158260475|dbj|BAF82415.1| unnamed protein product [Homo sapiens] Length = 916 Score = 43.6 bits (101), Expect = 0.093, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 L ++ G+ R L+ + ++ S + L SI G + A ++Y+ H + + Sbjct: 852 LLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYDFIHTSFAE 907 >gi|119467270|ref|XP_001257441.1| DNA repair protein RAD1, putative [Neosartorya fischeri NRRL 181] gi|119405593|gb|EAW15544.1| DNA repair protein RAD1, putative [Neosartorya fischeri NRRL 181] Length = 975 Score = 43.6 bits (101), Expect = 0.093, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 L + G+ P L+ G + I+ E L I ++ A KI F KN Sbjct: 919 LRAVPGVTPKVLERLILEMGNISEIANMDVEQLD--PLIGREAARKIVGFFRKN 970 >gi|118443584|ref|YP_877173.1| DNA integrity scanning protein DisA [Clostridium novyi NT] gi|118134040|gb|ABK61084.1| Domain of unknown function DUF147 family protein [Clostridium novyi NT] Length = 355 Score = 43.6 bits (101), Expect = 0.094, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 18/35 (51%) Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 F +K + +S E L ++EGI + A I N + Sbjct: 310 FKELKEVMEASYEELDNVEGIGEARAKAIKNGLRR 344 >gi|4885217|ref|NP_005227.1| DNA repair endonuclease XPF [Homo sapiens] gi|229463004|sp|Q92889|XPF_HUMAN RecName: Full=DNA repair endonuclease XPF; AltName: Full=DNA excision repair protein ERCC-4; AltName: Full=DNA repair protein complementing XP-F cells; AltName: Full=Xeroderma pigmentosum group F-complementing protein gi|19550957|gb|AAL91593.1|AF491814_1 excision repair cross-complementing rodent repair deficiency, complementation group 4 [Homo sapiens] gi|1905924|gb|AAB50174.1| DNA repair protein [Homo sapiens] gi|119605523|gb|EAW85117.1| excision repair cross-complementing rodent repair deficiency, complementation group 4, isoform CRA_a [Homo sapiens] gi|182887847|gb|AAI60102.1| Excision repair cross-complementing rodent repair deficiency, complementation group 4 [synthetic construct] Length = 916 Score = 43.6 bits (101), Expect = 0.094, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 L ++ G+ R L+ + ++ S + L SI G + A ++Y+ H + + Sbjct: 852 LLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYDFIHTSFAE 907 >gi|325977805|ref|YP_004287521.1| competence protein ComEA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177733|emb|CBZ47777.1| competence protein ComEA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 221 Score = 43.6 bits (101), Expect = 0.095, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 12/58 (20%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIY 604 A + L I+GIG R + ++ + S + LA++ GI +K K+ Sbjct: 165 ATLAELQTISGIGAKRAQDIIDY-------RDANGGFSSVDDLANVSGIGEKTLEKLK 215 >gi|306830922|ref|ZP_07464084.1| competence protein CelA [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426945|gb|EFM30055.1| competence protein CelA [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 221 Score = 43.6 bits (101), Expect = 0.095, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 12/58 (20%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIY 604 A + L I+GIG R + ++ + S + LA++ GI +K K+ Sbjct: 165 ATLAELQTISGIGAKRAQDIIDY-------RDANGGFSSVDDLANVSGIGEKTLEKLK 215 >gi|306833039|ref|ZP_07466171.1| competence protein CelA [Streptococcus bovis ATCC 700338] gi|304424938|gb|EFM28072.1| competence protein CelA [Streptococcus bovis ATCC 700338] Length = 221 Score = 43.6 bits (101), Expect = 0.095, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 12/58 (20%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIY 604 A + L I+GIG R + ++ + S + LA++ GI +K K+ Sbjct: 165 ATLAELQTISGIGAKRAQDIIDY-------RDANGGFSSVDDLANVSGIGEKTLEKLK 215 >gi|288904870|ref|YP_003430092.1| exogenous DNA-binding protein [Streptococcus gallolyticus UCN34] gi|288731596|emb|CBI13151.1| putative exogenous DNA-binding protein [Streptococcus gallolyticus UCN34] Length = 221 Score = 43.6 bits (101), Expect = 0.095, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 12/58 (20%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIY 604 A + L I+GIG R + ++ + S + LA++ GI +K K+ Sbjct: 165 ATLAELQTISGIGAKRAQDIIDY-------RDANGGFSSVDDLANVSGIGEKTLEKLK 215 >gi|269119219|ref|YP_003307396.1| DNA ligase, NAD-dependent [Sebaldella termitidis ATCC 33386] gi|268613097|gb|ACZ07465.1| DNA ligase, NAD-dependent [Sebaldella termitidis ATCC 33386] Length = 669 Score = 43.6 bits (101), Expect = 0.095, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 4/68 (5%) Query: 547 KRR--KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+R K YS I +G LL + F + + E L ++GI K+A + Sbjct: 503 KKREYSKVLYS--LGIPFVGKFTANLLAKEFLNIDNLKSKETEDLLEVKGIGDKVAKSVN 560 Query: 605 NHFHKNTS 612 + + Sbjct: 561 MFLNDENN 568 >gi|229823252|ref|ZP_04449321.1| hypothetical protein GCWU000282_00550 [Catonella morbi ATCC 51271] gi|229787418|gb|EEP23532.1| hypothetical protein GCWU000282_00550 [Catonella morbi ATCC 51271] Length = 671 Score = 43.6 bits (101), Expect = 0.095, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 29/56 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G RL+LQ FG + +S+++ E + +IEG+ I+ + + +S Sbjct: 513 GIRHVGAKAARLVLQVFGDLNRLSQATAEEIGAIEGVGPIISQSLVQYLTLESSQA 568 >gi|218883878|ref|YP_002428260.1| GIYc domain containing protein [Desulfurococcus kamchatkensis 1221n] gi|218765494|gb|ACL10893.1| GIYc domain containing protein [Desulfurococcus kamchatkensis 1221n] Length = 148 Score = 43.6 bits (101), Expect = 0.095, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 17/48 (35%) Query: 6 MPECPGVY----------------QMLDIAGRVLYVGKAYNLQKRIKS 37 +PE GVY + LD G VLY+G A NL++R+++ Sbjct: 21 VPERAGVYVVFWAKNGKPVAIPRIRCLDEKG-VLYIGSAKNLRQRVRN 67 >gi|114661075|ref|XP_510831.2| PREDICTED: DNA repair endonuclease XPF [Pan troglodytes] Length = 916 Score = 43.6 bits (101), Expect = 0.095, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 L ++ G+ R L+ + ++ S + L SI G + A ++Y+ H + + Sbjct: 852 LLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYDFIHTSFAE 907 >gi|1524411|gb|AAB07689.1| DNA repair endonuclease subunit [Homo sapiens] Length = 905 Score = 43.6 bits (101), Expect = 0.095, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 L ++ G+ R L+ + ++ S + L SI G + A ++Y+ H + + Sbjct: 841 LLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYDFIHTSFAE 896 >gi|324990610|gb|EGC22546.1| competence protein CelA [Streptococcus sanguinis SK353] Length = 239 Score = 43.6 bits (101), Expect = 0.095, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 A + L I+GIG R ++ + S + L + GI K K+ + Sbjct: 183 ATEAELQTISGIGQKRASDIIAYRESNGRFK--SVDDLKKVSGIGDKTLEKLKEY 235 >gi|298370545|ref|ZP_06981861.1| DNA topoisomerase [Neisseria sp. oral taxon 014 str. F0314] gi|298282005|gb|EFI23494.1| DNA topoisomerase [Neisseria sp. oral taxon 014 str. F0314] Length = 102 Score = 43.6 bits (101), Expect = 0.095, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 18/70 (25%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L+ + GIGP + + ++ F + E L ++GI I++ Sbjct: 32 ATAAELEALPGIGPAKAKAIVAYRQQNGQFK--------TVEDLKKVKGIG----EGIFS 79 Query: 606 HFHKNTSHTP 615 S P Sbjct: 80 KLKDEASVAP 89 >gi|254168485|ref|ZP_04875329.1| Type III restriction enzyme, res subunit family [Aciduliprofundum boonei T469] gi|197622540|gb|EDY35111.1| Type III restriction enzyme, res subunit family [Aciduliprofundum boonei T469] Length = 694 Score = 43.6 bits (101), Expect = 0.095, Method: Composition-based stats. Identities = 9/31 (29%), Positives = 19/31 (61%) Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYN 605 F +++ + +++ TL I GI +K+A +I Sbjct: 661 FDSIEKLKKANVSTLMRIPGIGRKLAEEILK 691 >gi|46447399|ref|YP_008764.1| putative DNA repair protein radC [Candidatus Protochlamydia amoebophila UWE25] gi|81697594|sp|Q6MAB0|Y1765_PARUW RecName: Full=UPF0758 protein pc1765 gi|46401040|emb|CAF24489.1| putative DNA repair protein radC [Candidatus Protochlamydia amoebophila UWE25] Length = 231 Score = 43.6 bits (101), Expect = 0.095, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 20/40 (50%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 R L+ FG ++ + +++ L ++GI A ++ + Sbjct: 53 RALVTRFGGLEALMQATLTELLEVQGIGFAKAIQLKAALN 92 >gi|329891298|ref|ZP_08269641.1| DNA repair protein RadC family protein [Brevundimonas diminuta ATCC 11568] gi|328846599|gb|EGF96163.1| DNA repair protein RadC family protein [Brevundimonas diminuta ATCC 11568] Length = 243 Score = 43.6 bits (101), Expect = 0.096, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 10/50 (20%) Query: 569 RLLLQSFGTVKMISRSSPETLASI---------EGISKKIACKIYNHFHK 609 + LL FG++ + +S E L ++ +G+ + A + H+ Sbjct: 58 KALLTRFGSLAAVLAASVEDLMTVRAEDSRGRSKGVGAETALDL-AALHE 106 >gi|281358694|ref|ZP_06245171.1| helicase, RecD/TraA family [Victivallis vadensis ATCC BAA-548] gi|281314820|gb|EFA98856.1| helicase, RecD/TraA family [Victivallis vadensis ATCC BAA-548] Length = 734 Score = 43.6 bits (101), Expect = 0.096, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 9/58 (15%) Query: 560 INGIGPLRKRLLLQSFGT-----VKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I GIG L++ FG + ++ L + GI KK A + + ++ Sbjct: 97 IPGIGKKTASLIVDYFGDQTLVVLDNFAK----RLEEVPGIGKKKAAAVVKGWRESAG 150 >gi|282900736|ref|ZP_06308678.1| SMF protein [Cylindrospermopsis raciborskii CS-505] gi|281194536|gb|EFA69491.1| SMF protein [Cylindrospermopsis raciborskii CS-505] Length = 375 Score = 43.6 bits (101), Expect = 0.096, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 27/48 (56%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 +I G+GP+ + L + FG ++ +SSP L IEG+ I KI + Sbjct: 16 QIAGVGPILLQRLQEHFGNLENAWKSSPGELGKIEGVGFHILQKIVQY 63 >gi|158339743|ref|YP_001520750.1| RecD/TraA family helicase [Acaryochloris marina MBIC11017] gi|158309984|gb|ABW31600.1| helicase, RecD/TraA family [Acaryochloris marina MBIC11017] Length = 753 Score = 43.6 bits (101), Expect = 0.096, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603 K S L I G+GP+ + ++ FG T+ +I + L+ + GI+KK I Sbjct: 95 KYLGSGL--IKGVGPVTAKRIVAHFGLDTLDIIEH-HIDRLSEVPGIAKKRVKMI 146 >gi|296331680|ref|ZP_06874149.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675361|ref|YP_003867033.1| Holliday junction DNA helicase [Bacillus subtilis subsp. spizizenii str. W23] gi|296151275|gb|EFG92155.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413605|gb|ADM38724.1| Holliday junction DNA helicase [Bacillus subtilis subsp. spizizenii str. W23] Length = 201 Score = 43.6 bits (101), Expect = 0.098, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 11/78 (14%) Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGT------VKMISRSS 585 +R++A F++ R +KA ++ L + GIGP +L G+ ++ I Sbjct: 49 HIREDA--FSLYGFSTREEKALFTKLLNVTGIGPKGALAIL---GSGDPGAVIQAIENED 103 Query: 586 PETLASIEGISKKIACKI 603 L G+ KK A +I Sbjct: 104 EAFLVKFPGVGKKTARQI 121 >gi|293400457|ref|ZP_06644602.1| competence protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305483|gb|EFE46727.1| competence protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 156 Score = 43.6 bits (101), Expect = 0.098, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 A LD + GIGP + +++ K ++ + E L ++GI K+ KI H Sbjct: 102 ATLEELDTLPGIGPSIAQRIVEY---RKQMAFQTLEDLKQVKGIGDKLFDKIKEHI 154 Score = 37.4 bits (85), Expect = 6.6, Method: Composition-based stats. Identities = 8/26 (30%), Positives = 15/26 (57%) Query: 581 ISRSSPETLASIEGISKKIACKIYNH 606 I+ ++ E L ++ GI IA +I + Sbjct: 99 INAATLEELDTLPGIGPSIAQRIVEY 124 >gi|284176326|ref|YP_003406602.1| hypothetical protein Htur_5041 [Haloterrigena turkmenica DSM 5511] gi|284017983|gb|ADB63929.1| hypothetical protein Htur_5041 [Haloterrigena turkmenica DSM 5511] Length = 122 Score = 43.6 bits (101), Expect = 0.098, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 27/55 (49%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 KA ++++NG+ R + + + + ++ + S L + GI +++A + Sbjct: 63 KAIRLVVEDVNGVSESRSKAIAREYESLDELRASDRARLEVVPGIGEELAAAVLE 117 >gi|302342564|ref|YP_003807093.1| DNA protecting protein DprA [Desulfarculus baarsii DSM 2075] gi|301639177|gb|ADK84499.1| DNA protecting protein DprA [Desulfarculus baarsii DSM 2075] Length = 376 Score = 43.6 bits (101), Expect = 0.099, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 22/44 (50%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 I G+G + LL +FG + E L+++ G+ + +A I Sbjct: 24 IPGVGGVTFARLLDAFGRPGRALGAPLEALSAVPGLRRTLAEAI 67 >gi|6967038|emb|CAB72450.1| I-PcI endonuclease [Podospora curvicolla] Length = 313 Score = 43.6 bits (101), Expect = 0.099, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 15/91 (16%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMI----SQINNIR-FTVT 63 G+Y + YVG +L+KR+ +Y +S+ R MI + FT+ Sbjct: 107 KSGIYLWTNKINGKRYVGSRLDLRKRLLNYFNSSYLLDRKDIMIIYKALLAHGFENFTL- 165 Query: 64 CTEV----EALLL---EANMIKRLKPRFNIL 87 E+ EA +L E I L P +NIL Sbjct: 166 --EILEYCEASVLIEREQYYIDLLNPEYNIL 194 >gi|15679750|ref|NP_276868.1| DNA mismatch recognition protein MutS [Methanothermobacter thermautotrophicus str. Delta H] gi|2622891|gb|AAB86228.1| DNA mismatch recognition protein MutS [Methanothermobacter thermautotrophicus str. Delta H] Length = 647 Score = 43.6 bits (101), Expect = 0.099, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 4/56 (7%) Query: 556 PLDEINGIGPLRKRLLLQSFGT----VKMISRSSPETLASIEGISKKIACKIYNHF 607 L E+ GIG R ++ FG ++ + + L +IEGIS++ A +I N Sbjct: 11 ILTEVGGIGERLARKIIDEFGGEDELLRAVKNLEIDRLVAIEGISQRRAIEIANKL 66 >gi|241895534|ref|ZP_04782830.1| Holliday junction DNA helicase RuvA [Weissella paramesenteroides ATCC 33313] gi|241871112|gb|EER74863.1| Holliday junction DNA helicase RuvA [Weissella paramesenteroides ATCC 33313] Length = 196 Score = 43.6 bits (101), Expect = 0.099, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%) Query: 548 RRKKAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKI 603 + K + L ++GIGP +L G + I+++ L GI KK A +I Sbjct: 63 KEDKDLFQKLLNVSGIGPKSALAILANSDHTGLINAITQNDIGFLTKFPGIGKKTAQQI 121 >gi|229014986|ref|ZP_04172066.1| hypothetical protein bmyco0001_53630 [Bacillus mycoides DSM 2048] gi|228746298|gb|EEL96221.1| hypothetical protein bmyco0001_53630 [Bacillus mycoides DSM 2048] Length = 73 Score = 43.6 bits (101), Expect = 0.099, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Query: 19 AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIK 78 +L+VGKA +++RIK + N + ++ I + +E + E MI Sbjct: 2 NDELLFVGKARKVRQRIKKHFEDNVSPIKNHR--DEVYCIDVCIVEDPMEREIYETYMIN 59 Query: 79 RLKPRFNI 86 + ++N+ Sbjct: 60 EFQAKYNV 67 >gi|164687114|ref|ZP_02211142.1| hypothetical protein CLOBAR_00740 [Clostridium bartlettii DSM 16795] gi|164603999|gb|EDQ97464.1| hypothetical protein CLOBAR_00740 [Clostridium bartlettii DSM 16795] Length = 742 Score = 43.6 bits (101), Expect = 0.099, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I+GIG +++ FG T+ +I +PE L +EGI K +I + +N Sbjct: 88 IHGIGEKMATRIIEKFGVDTLDVIQN-TPERLKEVEGIGSKKIKQITESYEEN 139 >gi|226442650|ref|NP_001140125.1| DNA excision repair protein ERCC-1 [Salmo salar] gi|221220050|gb|ACM08686.1| DNA excision repair protein ERCC-1 [Salmo salar] Length = 383 Score = 43.6 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 22/39 (56%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 LL +F +++ I ++ E L G+ + A ++Y+ H+ Sbjct: 335 LLSTFSSLEGIITAAKEDLVLCPGLGPQKARRLYDVLHQ 373 >gi|220905659|ref|YP_002480970.1| helicase, RecD/TraA family [Cyanothece sp. PCC 7425] gi|219862270|gb|ACL42609.1| helicase, RecD/TraA family [Cyanothece sp. PCC 7425] Length = 740 Score = 43.6 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603 K S L I G+GP+ + ++ FG T++ I + E L + GI++K I Sbjct: 91 KYLGSGL--IKGVGPVTAKRIVAHFGLETLE-IIETQIERLTEVPGIARKRVRLI 142 >gi|297717812|gb|ADI50049.1| DNA ligase [Candidatus Odyssella thessalonicensis L13] Length = 676 Score = 43.6 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 12/62 (19%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPE-----------TLASIEGISKKIACKIYNHF 607 I +G + +LL + + T+ + + + L S++GI K +A I + F Sbjct: 513 GIPQVGSVTAKLLARHYHTLPNLLN-TLQQAQDPTTDAYVDLLSLDGIGKNMAEDILSFF 571 Query: 608 HK 609 H+ Sbjct: 572 HE 573 >gi|288559840|ref|YP_003423326.1| DNA mismatch repair ATPase MutS family [Methanobrevibacter ruminantium M1] gi|288542550|gb|ADC46434.1| DNA mismatch repair ATPase MutS family [Methanobrevibacter ruminantium M1] Length = 644 Score = 43.6 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%) Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKM----ISRSSPETLASIEGISKKIACKIYNHF 607 S L I GIG + +L + G + I+ E L IEGIS++ A +I N Sbjct: 4 SELQNIKGIGDKLSQKILLNLGGEEELNRVINELDLERLIQIEGISQRKAIEIMNQL 60 >gi|229525582|ref|ZP_04414987.1| DNA ligase [Vibrio cholerae bv. albensis VL426] gi|229339163|gb|EEO04180.1| DNA ligase [Vibrio cholerae bv. albensis VL426] Length = 669 Score = 43.6 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 22/52 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L Q F +++ I ++S E + + +A + F ++ + Sbjct: 520 VGEATAFNLAQHFLSLEAIQQASLEQFIEVPDVGVIVASHLQAFFAQDRNQQ 571 >gi|194333271|ref|YP_002015131.1| DNA ligase, NAD-dependent [Prosthecochloris aestuarii DSM 271] gi|254781391|sp|B4S4Y6|DNLJ_PROA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|194311089|gb|ACF45484.1| DNA ligase, NAD-dependent [Prosthecochloris aestuarii DSM 271] Length = 675 Score = 43.6 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 AI R R + L I +G R L ++ ++ +++ ++ E L+ + I IA Sbjct: 506 AIEKSRTREYERVLYAL-GIRHVGLATARELAAAYHSIDLLASAALEELSCVADIGPVIA 564 Query: 601 CKIYNHFHKNTS 612 +++ F + Sbjct: 565 QSVHDFFRNPDA 576 >gi|281212695|gb|EFA86855.1| BRCT domain-containing protein [Polysphondylium pallidum PN500] Length = 1835 Score = 43.6 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%) Query: 555 SPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 S L I G G R + L +SF T +S +S E + + + ++Y+ FH Sbjct: 617 SVLCALGIPGFGKSRCKTLAKSFKTFDQLSNTSLEDITNRVQLGDLTTYQLYSFFHP 673 >gi|262066346|ref|ZP_06025958.1| DNA ligase, NAD-dependent [Fusobacterium periodonticum ATCC 33693] gi|291379910|gb|EFE87428.1| DNA ligase, NAD-dependent [Fusobacterium periodonticum ATCC 33693] Length = 696 Score = 43.6 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 26/55 (47%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I IG + ++L ++ + + + E L +IEGI + A +I F K + Sbjct: 537 GIPFIGKVASKVLAKASKNIDKLMSMTFEELTAIEGIGEIAANEIIAFFKKEKTQ 591 >gi|126662793|ref|ZP_01733792.1| Smf protein DNA processing chain A [Flavobacteria bacterium BAL38] gi|126626172|gb|EAZ96861.1| Smf protein DNA processing chain A [Flavobacteria bacterium BAL38] Length = 358 Score = 43.6 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 24/47 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 ++ G+G + + L+Q FG + + S+ L I+GI + + + Sbjct: 2 QVEGVGDVIAKKLIQHFGNAEEVFASNKSQLQKIDGIGSVLIKNLQD 48 >gi|16079826|ref|NP_390652.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp. subtilis str. 168] gi|221310713|ref|ZP_03592560.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp. subtilis str. 168] gi|221315037|ref|ZP_03596842.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319958|ref|ZP_03601252.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp. subtilis str. JH642] gi|221324239|ref|ZP_03605533.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp. subtilis str. SMY] gi|321312303|ref|YP_004204590.1| Holliday junction DNA helicase RuvA [Bacillus subtilis BSn5] gi|3183558|sp|O05392|RUVA_BACSU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|2635239|emb|CAB14734.1| Holliday junction DNA helicase [Bacillus subtilis subsp. subtilis str. 168] gi|6977805|emb|CAB75330.1| RuvA protein [Bacillus subtilis subsp. subtilis str. 168] gi|291485185|dbj|BAI86260.1| Holliday junction DNA helicase motor protein [Bacillus subtilis subsp. natto BEST195] gi|320018577|gb|ADV93563.1| Holliday junction DNA helicase RuvA [Bacillus subtilis BSn5] Length = 201 Score = 43.6 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 11/78 (14%) Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGT------VKMISRSS 585 +R++A F++ R +KA ++ L + GIGP +L G+ ++ I Sbjct: 49 HIREDA--FSLYGFSTREEKALFTKLLNVTGIGPKGALAIL---GSGDPGAVIQAIENED 103 Query: 586 PETLASIEGISKKIACKI 603 L G+ KK A +I Sbjct: 104 EAFLVKFPGVGKKTARQI 121 >gi|332884007|gb|EGK04287.1| DNA ligase [Dysgonomonas mossii DSM 22836] Length = 665 Score = 43.6 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 22/45 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + L +F + ++ ++ E L ++ I +IA I +F Sbjct: 515 VGETVAKKLALAFPDIDLLQAATIEDLTQVDEIGDRIAQSIVKYF 559 >gi|301058272|ref|ZP_07199312.1| DNA protecting protein DprA [delta proteobacterium NaphS2] gi|300447606|gb|EFK11331.1| DNA protecting protein DprA [delta proteobacterium NaphS2] Length = 369 Score = 43.6 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 25/46 (54%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 I G+G + + L + F V+ I ++ L +EG+ K +A KI + Sbjct: 17 IPGLGNVVLKRLYERFLDVEAIFQADFFDLMGVEGLRKGVAGKILD 62 >gi|291276652|ref|YP_003516424.1| Holliday junction DNA helicase [Helicobacter mustelae 12198] gi|290963846|emb|CBG39682.1| holliday junction DNA helicase [Helicobacter mustelae 12198] Length = 184 Score = 43.6 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 22/107 (20%) Query: 509 KFFVKKGEALVLNMRDPILYFI-QRLRDEAHRFAITTHRKR-------RKKAAYSPLDEI 560 + + G A L ++ L +I Q +R++AH +K + L +I Sbjct: 27 EIHISFGSAEELQGKEEALVYISQIIREDAH---------LLFGFVTPMEKQIFDTLIKI 77 Query: 561 NGIGPLRKRLLLQSFGTVKM----ISRSSPETLASIEGISKKIACKI 603 NG+GP +L +F + + I R L + G+ K A KI Sbjct: 78 NGVGPKVALAILSTF-SAQEFMAVIERKDIAALQKVPGVGTKSAGKI 123 >gi|330465518|ref|YP_004403261.1| hypothetical protein VAB18032_07705 [Verrucosispora maris AB-18-032] gi|328808489|gb|AEB42661.1| hypothetical protein VAB18032_07705 [Verrucosispora maris AB-18-032] Length = 237 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 22/52 (42%), Gaps = 3/52 (5%) Query: 11 GVYQMLDIAGRVLYVGKAY-NLQKRIKSYMHSNNHTHRITHM--ISQINNIR 59 G Y D G +YVG+ L+ R++ ++ + + + ++ + Sbjct: 22 GCYAFYDYDGEPIYVGQTNERLRARVRRHLTNQRTDAVAMRILDVFEVAEME 73 >gi|310644240|ref|YP_003948999.1| DNA ligase, nad-dependent [Paenibacillus polymyxa SC2] gi|309249191|gb|ADO58758.1| DNA ligase, NAD-dependent [Paenibacillus polymyxa SC2] Length = 671 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 547 KRRKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K +++ S L I G R+L + + + ++ + L + + +A I Sbjct: 500 KSKERDLASFLYALGIPNTGKATTRMLAEHYRDLHKTMSATVDELIELPDVGGIVAESIV 559 Query: 605 NHF 607 F Sbjct: 560 AFF 562 >gi|325981222|ref|YP_004293624.1| Holliday junction ATP-dependent DNA helicase ruvA [Nitrosomonas sp. AL212] gi|325530741|gb|ADZ25462.1| Holliday junction ATP-dependent DNA helicase ruvA [Nitrosomonas sp. AL212] Length = 193 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 7/63 (11%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACKIYN 605 + + L +I+GIG LL G +V + + S + L + GI KK A ++ Sbjct: 69 RQTFRQLIKISGIGARTALALLS--GLSVADLHHAVSIQDSARLVKVPGIGKKTAERLLL 126 Query: 606 HFH 608 Sbjct: 127 ELR 129 >gi|213966177|ref|ZP_03394363.1| DNA-binding protein [Corynebacterium amycolatum SK46] gi|213951192|gb|EEB62588.1| DNA-binding protein [Corynebacterium amycolatum SK46] Length = 265 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 14/61 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A+ + L+E+ GIGP ++ F +S + L + GI + + Sbjct: 210 ASATQLEELPGIGPATATKIIDFREKNGAF--------ASIDALEEVPGIGPAKVEALRD 261 Query: 606 H 606 Sbjct: 262 A 262 >gi|194377974|dbj|BAG63350.1| unnamed protein product [Homo sapiens] Length = 466 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 L ++ G+ R L+ + ++ S + L SI G + A ++Y+ H + + Sbjct: 402 LLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYDFIHTSFAE 457 >gi|166363019|ref|YP_001655292.1| SMF family DNA processing protein [Microcystis aeruginosa NIES-843] gi|166085392|dbj|BAG00100.1| SMF family DNA processing protein [Microcystis aeruginosa NIES-843] Length = 382 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 22/41 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 I G+G + + L Q FG+V + ++ +A + G KK+ Sbjct: 13 SIAGVGSISLKRLYQHFGSVAVAWNATDTAIAEVAGFGKKL 53 >gi|258645584|ref|ZP_05733053.1| helicase, RecD/TraA family [Dialister invisus DSM 15470] gi|260402942|gb|EEW96489.1| helicase, RecD/TraA family [Dialister invisus DSM 15470] Length = 709 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 5/57 (8%) Query: 553 AYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHF 607 S L I+GIGP + ++Q FG T++ I + + L+ + GI +K +I + + Sbjct: 86 LASGL--ISGIGPSMAKRIVQHFGKKTLE-IFERNIDALSEVSGIGQKTLERIKDSY 139 >gi|311743698|ref|ZP_07717504.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272] gi|311312828|gb|EFQ82739.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272] Length = 182 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 11/27 (40%), Positives = 16/27 (59%) Query: 12 VYQMLDIAGRVLYVGKAYNLQKRIKSY 38 VY+ D GR++YVG NL R+ + Sbjct: 12 VYRCFDQDGRLIYVGSTANLPNRLAQH 38 >gi|149182832|ref|ZP_01861293.1| DNA polymerase I [Bacillus sp. SG-1] gi|148849447|gb|EDL63636.1| DNA polymerase I [Bacillus sp. SG-1] Length = 875 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 6/48 (12%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + G+G LL+ FGT++ + S + ++ KK+ K+ H Sbjct: 192 GVPGVGEKTAIKLLKQFGTIEKLLE-SIDEVS-----GKKLKEKLEEH 233 >gi|237739847|ref|ZP_04570328.1| NAD-dependent DNA ligase [Fusobacterium sp. 2_1_31] gi|229423455|gb|EEO38502.1| NAD-dependent DNA ligase [Fusobacterium sp. 2_1_31] Length = 594 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 26/55 (47%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I IG + ++L ++ + + + E L SIEGI + A +I F K + Sbjct: 435 GIPFIGKVASKVLAKASKNIDKLMSMTFEELTSIEGIGEIAANEIIAFFKKEKTQ 489 >gi|126697594|ref|YP_001086491.1| DNA integrity scanning protein DisA [Clostridium difficile 630] gi|254973679|ref|ZP_05270151.1| DNA integrity scanning protein DisA [Clostridium difficile QCD-66c26] gi|255091071|ref|ZP_05320549.1| DNA integrity scanning protein DisA [Clostridium difficile CIP 107932] gi|255099186|ref|ZP_05328163.1| DNA integrity scanning protein DisA [Clostridium difficile QCD-63q42] gi|255312724|ref|ZP_05354307.1| DNA integrity scanning protein DisA [Clostridium difficile QCD-76w55] gi|255515485|ref|ZP_05383161.1| DNA integrity scanning protein DisA [Clostridium difficile QCD-97b34] gi|255648577|ref|ZP_05395479.1| DNA integrity scanning protein DisA [Clostridium difficile QCD-37x79] gi|260681797|ref|YP_003213082.1| DNA integrity scanning protein DisA [Clostridium difficile CD196] gi|260685394|ref|YP_003216527.1| DNA integrity scanning protein DisA [Clostridium difficile R20291] gi|306518706|ref|ZP_07405053.1| DNA integrity scanning protein DisA [Clostridium difficile QCD-32g58] gi|123174660|sp|Q18CB2|DISA_CLOD6 RecName: Full=DNA integrity scanning protein disA gi|115249031|emb|CAJ66842.1| DNA integrity scanning protein disA [Clostridium difficile] gi|260207960|emb|CBA60092.1| putative DNA-binding protein [Clostridium difficile CD196] gi|260211410|emb|CBE01492.1| putative DNA-binding protein [Clostridium difficile R20291] Length = 356 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 39/140 (27%) Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 + ++ +K LN E I ++++AK + E++ + ++ Sbjct: 241 NKENTEIKELMKKVKNLNSEELIELVNMAKLLG--------YSGFSESMDMPIKTRGYRI 292 Query: 530 IQRLRDEAHRF--AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 + ++ HR AI L+ F + I +S E Sbjct: 293 LSKI----HRLPTAI-------------------------IENLVNYFENFQQILDASIE 323 Query: 588 TLASIEGISKKIACKIYNHF 607 L +EGI + A I N Sbjct: 324 ELDEVEGIGEIRATYIKNGL 343 >gi|257869253|ref|ZP_05648906.1| NAD-dependent DNA ligase [Enterococcus gallinarum EG2] gi|257803417|gb|EEV32239.1| NAD-dependent DNA ligase [Enterococcus gallinarum EG2] Length = 676 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 26/53 (49%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G R+L + + ++ +S++ + S+E I + IA + +F+ Sbjct: 513 GIRHVGSKAARILAEHYRNLRNLSKADESEIVSLETIGQTIADSVVTYFNNEE 565 >gi|242373894|ref|ZP_04819468.1| competence protein comEA [Staphylococcus epidermidis M23864:W1] gi|242348448|gb|EES40050.1| competence protein comEA [Staphylococcus epidermidis M23864:W1] Length = 228 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 8/60 (13%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607 A S L + GIGP + + ++ G I + L I+G +K K+ +F Sbjct: 172 NATESELKGVPGIGPTKAKEIINYREQNGRFDKI-----DDLKKIKGFGEKTFEKLKEYF 226 >gi|313124902|ref|YP_004035166.1| DNA repair and recombination protein rada [Halogeometricum borinquense DSM 11551] gi|312291267|gb|ADQ65727.1| DNA repair and recombination protein RadA [Halogeometricum borinquense DSM 11551] Length = 343 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 L+ + G+GP L + F + + I+ +SP L++ + + + I N + Sbjct: 6 LESLPGVGPATADKLTDAGFESYQAIAVASPSELSNTADVGESTSSDIINAAREAAD 62 >gi|261401085|ref|ZP_05987210.1| DNA ligase, NAD-dependent [Neisseria lactamica ATCC 23970] gi|269208977|gb|EEZ75432.1| DNA ligase, NAD-dependent [Neisseria lactamica ATCC 23970] Length = 827 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FG+++ + R+ LA + I +A I + F + Sbjct: 592 GIRHVGERTAKTLAQAFGSLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 647 >gi|149914799|ref|ZP_01903329.1| Helicase RecD/TraA [Roseobacter sp. AzwK-3b] gi|149811592|gb|EDM71427.1| Helicase RecD/TraA [Roseobacter sp. AzwK-3b] Length = 723 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%) Query: 560 INGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKI 603 I GIGP+ + L+++FG V I ++PE L + GI A KI Sbjct: 98 IRGIGPVYAKRLVKAFGKDVFDIIEAAPERLREVTGIGLMRAAKI 142 >gi|123966450|ref|YP_001011531.1| hypothetical protein P9515_12171 [Prochlorococcus marinus str. MIT 9515] gi|123200816|gb|ABM72424.1| Hypothetical protein P9515_12171 [Prochlorococcus marinus str. MIT 9515] Length = 248 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIY 604 L E++G+G LL + + +++ + + E L +I+GI KK+ K+ Sbjct: 199 LCELDGVGGKTAGLLWDAGYLSIEAVKNAPQEELLNIKGIGKKLVEKLK 247 >gi|114567871|ref|YP_755025.1| DNA integrity scanning protein DisA [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338806|gb|ABI69654.1| putative nucleic-acid-binding protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 356 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 21/40 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L++ FG + + R+S E L +EGI + A I N + Sbjct: 306 NLVERFGLLSNVLRASIEELDDVEGIGEVRARSIKNGLKR 345 >gi|326693304|ref|ZP_08230309.1| Holliday junction DNA helicase RuvA [Leuconostoc argentinum KCTC 3773] Length = 197 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 5/57 (8%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKI 603 K ++ L ++GIGP +L S G + + + L G+ KK A +I Sbjct: 67 KILFNKLLNVSGIGPKSALAILAS-GDAQGLVNAVANDDVSYLTQFPGVGKKTAQQI 122 >gi|188585739|ref|YP_001917284.1| competence protein ComEA helix-hairpin-helix repeat protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350426|gb|ACB84696.1| competence protein ComEA helix-hairpin-helix repeat protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 207 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 4/50 (8%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISR-SSPETLASIEGISKKIACKIYN 605 L+ + GIGP+R +++ + + +S E + + GI I +I Sbjct: 157 LESLPGIGPVRAESIIKH---REKVGEFTSIEQIMDVNGIGPGIFNQIKE 203 >gi|138896185|ref|YP_001126638.1| DNA repair protein RadC [Geobacillus thermodenitrificans NG80-2] gi|196250140|ref|ZP_03148834.1| DNA repair protein RadC [Geobacillus sp. G11MC16] gi|166218780|sp|A4IRD9|Y2548_GEOTN RecName: Full=UPF0758 protein GTNG_2548 gi|134267698|gb|ABO67893.1| DNA repair protein [Geobacillus thermodenitrificans NG80-2] gi|196210324|gb|EDY05089.1| DNA repair protein RadC [Geobacillus sp. G11MC16] Length = 226 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 21/39 (53%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + +LQ F ++++ ++ E + SI+GI A +I Sbjct: 50 QRVLQHFEGLRLLKDATVEEMTSIKGIGPTKAVQILAAL 88 >gi|116754111|ref|YP_843229.1| ski2-like helicase [Methanosaeta thermophila PT] gi|116665562|gb|ABK14589.1| DEAD/DEAH box helicase domain protein [Methanosaeta thermophila PT] Length = 693 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L E+ GIG +R R L Q+ + +++ + + TL+ I G KIA + + + Sbjct: 636 QLLELKGIGRVRARKLYQAGYRSLEDLKAADKSTLSEILG--PKIAEGVISQLKE 688 >gi|57234606|ref|YP_181338.1| DNA ligase, NAD-dependent [Dehalococcoides ethenogenes 195] gi|123759715|sp|Q3Z8W1|DNLJ_DEHE1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|57225054|gb|AAW40111.1| DNA ligase, NAD-dependent [Dehalococcoides ethenogenes 195] Length = 677 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 24/54 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G LL +G + ++ + + L +I I KIA I +F + + Sbjct: 523 GIRHVGNETAALLSSRYGDIWALAGAGLDELQTIPDIGAKIASSIKAYFSEEKN 576 >gi|145220238|ref|YP_001130947.1| DNA polymerase I [Prosthecochloris vibrioformis DSM 265] gi|145206402|gb|ABP37445.1| DNA polymerase I [Chlorobium phaeovibrioides DSM 265] Length = 940 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 4/36 (11%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590 D I G IGP LL FG+++ + E +A Sbjct: 213 DNIPGAKGIGPKTAATLLGRFGSLENVYE-KLEEIA 247 >gi|297616642|ref|YP_003701801.1| hypothetical protein Slip_0452 [Syntrophothermus lipocalidus DSM 12680] gi|297144479|gb|ADI01236.1| conserved hypothetical protein [Syntrophothermus lipocalidus DSM 12680] Length = 388 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 3/49 (6%) Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKI 603 PL + G+GP L++ F + +I + + + + G + A I Sbjct: 318 PLAMLPGVGPRTVEKLVEHFENEIHVIENADLDEIKQVAG--AETATVI 364 >gi|219683758|ref|YP_002470141.1| DNA-binding protein [Bifidobacterium animalis subsp. lactis AD011] gi|219621408|gb|ACL29565.1| putative DNA-binding protein [Bifidobacterium animalis subsp. lactis AD011] Length = 236 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 14/54 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKI 603 L EI GIGP+ +++ F +S + L ++ GI K K+ Sbjct: 184 QLQEIKGIGPVTAARIIEYRTQHGAF--------ASLDDLVNVPGIGMKTVEKL 229 >gi|195977787|ref|YP_002123031.1| DNA receptor late competence protein ComEA [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974492|gb|ACG62018.1| DNA receptor late competence protein ComEA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 225 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 +A+ + L I+GIG R + ++ ++ S E L + GI K K+ Sbjct: 168 RASLADLQRISGIGAKRAQDIIDVRESLGGFK--SLEDLRKVPGIGAKTLEKLK 219 >gi|183601709|ref|ZP_02963079.1| putative DNA-binding protein [Bifidobacterium animalis subsp. lactis HN019] gi|241190793|ref|YP_002968187.1| putative DNA-binding protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196199|ref|YP_002969754.1| putative DNA-binding protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219315|gb|EDT89956.1| putative DNA-binding protein [Bifidobacterium animalis subsp. lactis HN019] gi|240249185|gb|ACS46125.1| putative DNA-binding protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250753|gb|ACS47692.1| putative DNA-binding protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178529|gb|ADC85775.1| COME operon protein 1 [Bifidobacterium animalis subsp. lactis BB-12] gi|295793782|gb|ADG33317.1| putative DNA-binding protein [Bifidobacterium animalis subsp. lactis V9] Length = 258 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 14/54 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKI 603 L EI GIGP+ +++ F +S + L ++ GI K K+ Sbjct: 206 QLQEIKGIGPVTAARIIEYRTQHGAF--------ASLDDLVNVPGIGMKTVEKL 251 >gi|118444996|ref|YP_878985.1| RecD/TraA family helicase [Clostridium novyi NT] gi|118135452|gb|ABK62496.1| helicase, RecD/TraA family [Clostridium novyi NT] Length = 735 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603 I+GIGP+ + +++ FG T+ + E L I+GI K I Sbjct: 88 ISGIGPVTAKKIVEHFGEKTLD-VLDEDIEKLKEIDGIGTKKIETI 132 >gi|166010983|ref|ZP_02231881.1| DNA polymerase IV [Yersinia pestis biovar Antiqua str. E1979001] gi|167399408|ref|ZP_02304932.1| DNA polymerase IV [Yersinia pestis biovar Antiqua str. UG05-0454] gi|45435409|gb|AAS60968.1| DNA-damage-inducible protein P [Yersinia pestis biovar Microtus str. 91001] gi|165989983|gb|EDR42284.1| DNA polymerase IV [Yersinia pestis biovar Antiqua str. E1979001] gi|167051912|gb|EDR63320.1| DNA polymerase IV [Yersinia pestis biovar Antiqua str. UG05-0454] gi|262363012|gb|ACY59733.1| DNA polymerase IV [Yersinia pestis D106004] Length = 356 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 29/80 (36%) Query: 556 PLDEINGIGPLRKRL-------------------LLQSFGTVKMI----------SRSSP 586 PL +I G+G + + LL+ FG + SP Sbjct: 181 PLSKIPGVGAVTAKRLQALGLVTCGDIQKYPLAELLKHFGKFGRVLWERSHGIDEREISP 240 Query: 587 ETLASIEGISKKIACKIYNH 606 + L G+ K +A IY+ Sbjct: 241 DRLRKSVGVEKTLAEDIYDW 260 >gi|21957698|gb|AAM84540.1|AE013699_2 damage-inducible protein P; putative tRNA synthetase [Yersinia pestis KIM 10] Length = 356 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 29/80 (36%) Query: 556 PLDEINGIGPLRKRL-------------------LLQSFGTVKMI----------SRSSP 586 PL +I G+G + + LL+ FG + SP Sbjct: 181 PLSKIPGVGAVTAKRLQALGLVTCGDIQKYPLAELLKHFGKFGRVLWERSHGIDEREISP 240 Query: 587 ETLASIEGISKKIACKIYNH 606 + L G+ K +A IY+ Sbjct: 241 DRLRKSVGVEKTLAEDIYDW 260 >gi|51595246|ref|YP_069437.1| DNA polymerase IV [Yersinia pseudotuberculosis IP 32953] gi|153950157|ref|YP_001402117.1| DNA polymerase IV [Yersinia pseudotuberculosis IP 31758] gi|170025513|ref|YP_001722018.1| DNA polymerase IV [Yersinia pseudotuberculosis YPIII] gi|186894264|ref|YP_001871376.1| DNA polymerase IV [Yersinia pseudotuberculosis PB1/+] gi|81640247|sp|Q66DZ7|DPO4_YERPS RecName: Full=DNA polymerase IV; Short=Pol IV gi|189044620|sp|A7FLI9|DPO4_YERP3 RecName: Full=DNA polymerase IV; Short=Pol IV gi|51588528|emb|CAH20136.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein P [Yersinia pseudotuberculosis IP 32953] gi|152961652|gb|ABS49113.1| DNA polymerase IV [Yersinia pseudotuberculosis IP 31758] gi|169752047|gb|ACA69565.1| DNA-directed DNA polymerase [Yersinia pseudotuberculosis YPIII] gi|186697290|gb|ACC87919.1| UMUC domain protein DNA-repair protein [Yersinia pseudotuberculosis PB1/+] Length = 352 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 29/80 (36%) Query: 556 PLDEINGIGPLRKRL-------------------LLQSFGTVKMI----------SRSSP 586 PL +I G+G + + LL+ FG + SP Sbjct: 177 PLSKIPGVGAVTAKRLQALGLVTCGEIQKYPLAELLKHFGKFGRVLWERSHGIDEREISP 236 Query: 587 ETLASIEGISKKIACKIYNH 606 + L G+ K +A IY+ Sbjct: 237 DRLRKSVGVEKTLAEDIYDW 256 >gi|255304969|ref|ZP_05349141.1| DNA integrity scanning protein DisA [Clostridium difficile ATCC 43255] gi|255654112|ref|ZP_05399521.1| DNA integrity scanning protein DisA [Clostridium difficile QCD-23m63] gi|296449849|ref|ZP_06891616.1| DNA integrity scanning protein [Clostridium difficile NAP08] gi|296877913|ref|ZP_06901933.1| DNA integrity scanning protein [Clostridium difficile NAP07] gi|296261336|gb|EFH08164.1| DNA integrity scanning protein [Clostridium difficile NAP08] gi|296431110|gb|EFH16937.1| DNA integrity scanning protein [Clostridium difficile NAP07] Length = 356 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 39/140 (27%) Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529 + ++ +K LN E I ++++AK + E++ + ++ Sbjct: 241 NKENTEIKELMKKVKNLNSEELIELVNMAKLLG--------YSGFSESMDMPIKTRGYRI 292 Query: 530 IQRLRDEAHRF--AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 + ++ HR AI L+ F + I +S E Sbjct: 293 LSKI----HRLPTAI-------------------------IENLVNYFENFQQILDASIE 323 Query: 588 TLASIEGISKKIACKIYNHF 607 L +EGI + A I N Sbjct: 324 ELDEVEGIGEIRATYIKNGL 343 >gi|56807783|ref|ZP_00365637.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II) [Streptococcus pyogenes M49 591] Length = 571 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 28/54 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I IG RL+L+ +G + + + E +A I+G+ IA + +F + T+ Sbjct: 421 GIRHIGSKVSRLILEVYGDISALLTAKEEEIARIDGLGSTIAQSLTQYFEQKTA 474 >gi|317499031|ref|ZP_07957312.1| DNA ligase [Lachnospiraceae bacterium 5_1_63FAA] gi|316893681|gb|EFV15882.1| DNA ligase [Lachnospiraceae bacterium 5_1_63FAA] Length = 651 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 1/51 (1%) Query: 559 EINGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I +G +L+ + F I + E +I+ I IA + ++FH Sbjct: 496 GIPNVGLSNAKLICKHFKEDFNAIREADAEDFIAIDQIGPMIAEAMVSYFH 546 >gi|291288208|ref|YP_003505024.1| DNA ligase, NAD-dependent [Denitrovibrio acetiphilus DSM 12809] gi|290885368|gb|ADD69068.1| DNA ligase, NAD-dependent [Denitrovibrio acetiphilus DSM 12809] Length = 652 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +G ++L + FG + + + E L ++ I + A I N F + Sbjct: 500 GIRHVGERTAQVLAEYFGDIDKLVSADEEALVNVRDIGSETAGAIVNSFANDD 552 >gi|313127204|ref|YP_004037474.1| DNA polymerase iv (family x) [Halogeometricum borinquense DSM 11551] gi|312293569|gb|ADQ68029.1| DNA polymerase IV (family X) [Halogeometricum borinquense DSM 11551] Length = 582 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 3/52 (5%) Query: 557 LDEINGIGPLRKRLLLQSFG--TVKMISRSSPET-LASIEGISKKIACKIYN 605 L + G+GP L + G T+ + R++ E + ++G K I Sbjct: 95 LTSVEGVGPKTVGKLYDALGITTLDELERAAEEEQIREVKGFGPKTEANIRE 146 >gi|315651635|ref|ZP_07904646.1| RecD/TraA family helicase [Eubacterium saburreum DSM 3986] gi|315486089|gb|EFU76460.1| RecD/TraA family helicase [Eubacterium saburreum DSM 3986] Length = 744 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I G+G + +++ F T+ + PE L ++G+S K+A I + S Sbjct: 88 IKGVGEALAKRIIKKFKLDTL-RVMEEEPERLVEVKGVSAKLAKSISEQIQEKKS 141 >gi|312194271|ref|YP_004014332.1| DNA integrity scanning, DisA, linker region [Frankia sp. EuI1c] gi|311225607|gb|ADP78462.1| DNA integrity scanning, DisA, linker region [Frankia sp. EuI1c] Length = 359 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 18/38 (47%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L+ F T++ + + + L ++EG+ + A + Sbjct: 309 RLVDHFTTLQKLLAAGVDDLQAVEGVGETRAKAVREGL 346 >gi|257125939|ref|YP_003164053.1| DNA ligase, NAD-dependent [Leptotrichia buccalis C-1013-b] gi|257049878|gb|ACV39062.1| DNA ligase, NAD-dependent [Leptotrichia buccalis C-1013-b] Length = 706 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 25/54 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G LL ++F ++ + S E L +++GI K+A + + + Sbjct: 545 GIPFVGKFNANLLTKTFKNIENLKNQSIENLLAVKGIGDKVAVAVNTFLNDENN 598 >gi|212550985|ref|YP_002309302.1| NAD-dependent DNA ligase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|254781545|sp|B6YRR9|DNLJ_AZOPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|212549223|dbj|BAG83891.1| NAD-dependent DNA ligase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 663 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 29/50 (58%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + + L ++F T++ +S ++ E L +I+GI +IA + +F + Sbjct: 515 VGEVVAKRLAKAFPTIEQLSIANNEQLTTIDGIGNQIAQSVIQYFSNENN 564 >gi|325578251|ref|ZP_08148386.1| competence protein ComEA [Haemophilus parainfluenzae ATCC 33392] gi|325159987|gb|EGC72116.1| competence protein ComEA [Haemophilus parainfluenzae ATCC 33392] Length = 234 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 2/57 (3%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 KA L +++GIG + + ++ V I + L++I+GI + KI Sbjct: 178 KADAETLQKLSGIGEKKAQAIIDYRNKVGKIKSA--AELSNIDGIGEATIEKITPFL 232 >gi|318061206|ref|ZP_07979927.1| membrane-bound DNA-binding protein [Streptomyces sp. SA3_actG] gi|318080631|ref|ZP_07987963.1| membrane-bound DNA-binding protein [Streptomyces sp. SA3_actF] Length = 258 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 14/57 (24%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNH 606 LD + G+GP+ + +L FG+V + L + GI ++ ++ + Sbjct: 207 QLDGLPGVGPVLAQRILDHRVAHGGFGSV--------DELREVTGIGERRFAELREY 255 >gi|313200896|ref|YP_004039554.1| competence protein comea helix-hairpin-helix repeat-containing protein [Methylovorus sp. MP688] gi|312440212|gb|ADQ84318.1| competence protein ComEA helix-hairpin-helix repeat protein [Methylovorus sp. MP688] Length = 95 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 16/70 (22%) Query: 540 FAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASI 592 FA++ H A+ L+ + GIGP + + ++ F + E L ++ Sbjct: 10 FALSAHAAVNINTASKEELETVKGIGPAKAQAIIDYRKKNGNFK--------TVEDLNNV 61 Query: 593 EGIS-KKIAC 601 G K +A Sbjct: 62 PGFGDKSLAK 71 Score = 41.6 bits (96), Expect = 0.36, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 18/33 (54%) Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I+ +S E L +++GI A I ++ KN + Sbjct: 19 NINTASKEELETVKGIGPAKAQAIIDYRKKNGN 51 >gi|302519017|ref|ZP_07271359.1| DNA-binding protein [Streptomyces sp. SPB78] gi|302427912|gb|EFK99727.1| DNA-binding protein [Streptomyces sp. SPB78] Length = 324 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 14/57 (24%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNH 606 LD + G+GP+ + +L FG+V + L + GI ++ ++ + Sbjct: 273 QLDGLPGVGPVLAQRILDHRVAHGRFGSV--------DELREVTGIGERRFAELREY 321 >gi|253998810|ref|YP_003050873.1| competence protein ComEA helix-hairpin-helix repeat-containing protein [Methylovorus sp. SIP3-4] gi|253985489|gb|ACT50346.1| competence protein ComEA helix-hairpin-helix repeat protein [Methylovorus sp. SIP3-4] Length = 99 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 16/70 (22%) Query: 540 FAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASI 592 FA++ H A+ L+ + GIGP + + ++ F + E L ++ Sbjct: 14 FALSAHAAVNINTASKEELETVKGIGPAKAQAIIDYRKKNGNFK--------TVEDLNNV 65 Query: 593 EGIS-KKIAC 601 G K +A Sbjct: 66 PGFGDKSLAK 75 Score = 41.6 bits (96), Expect = 0.36, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 18/33 (54%) Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I+ +S E L +++GI A I ++ KN + Sbjct: 23 NINTASKEELETVKGIGPAKAQAIIDYRKKNGN 55 >gi|255533202|ref|YP_003093574.1| DNA ligase, NAD-dependent [Pedobacter heparinus DSM 2366] gi|255346186|gb|ACU05512.1| DNA ligase, NAD-dependent [Pedobacter heparinus DSM 2366] Length = 670 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 4/51 (7%) Query: 563 IGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 +G + L ++G V ++ +S E L +I+ I ++IA I +F K Sbjct: 520 VGETVAKKL--AYGVKNVDKLASASLEELTAIDEIGQRIAESIIEYFGKAE 568 >gi|166030629|ref|ZP_02233458.1| hypothetical protein DORFOR_00295 [Dorea formicigenerans ATCC 27755] gi|166029631|gb|EDR48388.1| hypothetical protein DORFOR_00295 [Dorea formicigenerans ATCC 27755] Length = 647 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 559 EINGIGPLRKRLLLQSF-GTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I GIG +++ + F G V + ++ E LA I+G+ + +A +F Sbjct: 490 GIPGIGLANAKVICREFSGDVDRMIHATAEELAEIQGVGEVLAGAFVTYFQDE 542 >gi|94988258|ref|YP_596359.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS9429] gi|94992132|ref|YP_600231.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS2096] gi|122986939|sp|Q1JCM1|DNLJ_STRPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|123080420|sp|Q1JMJ7|DNLJ_STRPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|94541766|gb|ABF31815.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS9429] gi|94545640|gb|ABF35687.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS2096] Length = 652 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 28/54 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I IG RL+L+ +G + + + E +A I+G+ IA + +F + T+ Sbjct: 502 GIRHIGSKVSRLILEVYGDISALLTAKEEEIARIDGLGSTIAQSLTQYFEQKTA 555 >gi|32453718|ref|NP_861927.1| endonuclease II [Enterobacteria phage RB69] gi|32350537|gb|AAP76136.1| DenA endonuclease II [Enterobacteria phage RB69] Length = 136 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 22/93 (23%) Query: 19 AGRVLYVGKAYNLQKRIKSY---------MHSNNHTHRITHMISQINNIRF-------TV 62 ++Y+GK NL+KRI Y + + I + Q + F Sbjct: 42 DDELVYIGKTKNLKKRINYYRTAINRKDQTSDSRKSLMILDALMQGKKVEFWARQCFDLS 101 Query: 63 TCTEVEAL------LLEANMIKRLKPRFNILLR 89 E+ ++ L E IK+ P +NI + Sbjct: 102 VTNELGSMTIATMDLEEPLFIKKFNPPWNIQHK 134 >gi|15674800|ref|NP_268974.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes M1 GAS] gi|71910386|ref|YP_281936.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS5005] gi|81533831|sp|Q9A0J5|DNLJ_STRP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|13621930|gb|AAK33695.1| putative DNA ligase [Streptococcus pyogenes M1 GAS] gi|71853168|gb|AAZ51191.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS5005] Length = 652 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 28/54 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I IG RL+L+ +G + + + E +A I+G+ IA + +F + T+ Sbjct: 502 GIRHIGSKVSRLILEVYGDISALLTAKEEEIARIDGLGSTIAQSLTQYFEQKTA 555 >gi|21910027|ref|NP_664295.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS315] gi|28896275|ref|NP_802625.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes SSI-1] gi|81759290|sp|Q8K831|DNLJ_STRP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|21904217|gb|AAM79098.1| putative DNA ligase [Streptococcus pyogenes MGAS315] gi|28811526|dbj|BAC64458.1| putative DNA ligase [Streptococcus pyogenes SSI-1] Length = 652 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 28/54 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I IG RL+L+ +G + + + E +A I+G+ IA + +F + T+ Sbjct: 502 GIRHIGSKVSRLILEVYGDISALLTAKEEEIARIDGLGSTIAQSLTQYFEQKTA 555 >gi|108804847|ref|YP_644784.1| DNA polymerase I [Rubrobacter xylanophilus DSM 9941] gi|108766090|gb|ABG04972.1| DNA polymerase I [Rubrobacter xylanophilus DSM 9941] Length = 843 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 7/39 (17%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 D I G IGP LL+ FG+++ + E L +E Sbjct: 197 DNIPGVRGIGPKSAAALLRRFGSLEALY----ERLEEVE 231 >gi|308494348|ref|XP_003109363.1| hypothetical protein CRE_08225 [Caenorhabditis remanei] gi|308246776|gb|EFO90728.1| hypothetical protein CRE_08225 [Caenorhabditis remanei] Length = 247 Score = 43.2 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 20/39 (51%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 LL FGT++ +S ++ ++ G+ A +++ H Sbjct: 202 RLLFHFGTLQAVSTATETAISVCPGVGPIKAKNLHSFLH 240 >gi|281202660|gb|EFA76862.1| DNA excision repair protein 1 [Polysphondylium pallidum PN500] Length = 536 Score = 43.2 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 9/68 (13%) Query: 551 KAAYSPLDE---------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 K S LD+ I GI L+ +FGTVK I S E+ G+ +K Sbjct: 389 KTKQSNLDKTLVQDALTTIKGINKTDATTLISTFGTVKRIFDGSKESFGLCPGMGQKKVN 448 Query: 602 KIYNHFHK 609 +YN H+ Sbjct: 449 SLYNVLHQ 456 >gi|161484857|ref|NP_668289.2| DNA polymerase IV [Yersinia pestis KIM 10] gi|270489441|ref|ZP_06206515.1| DNA polymerase IV [Yersinia pestis KIM D27] gi|270337945|gb|EFA48722.1| DNA polymerase IV [Yersinia pestis KIM D27] Length = 352 Score = 43.2 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 29/80 (36%) Query: 556 PLDEINGIGPLRKRL-------------------LLQSFGTVKMI----------SRSSP 586 PL +I G+G + + LL+ FG + SP Sbjct: 177 PLSKIPGVGAVTAKRLQALGLVTCGDIQKYPLAELLKHFGKFGRVLWERSHGIDEREISP 236 Query: 587 ETLASIEGISKKIACKIYNH 606 + L G+ K +A IY+ Sbjct: 237 DRLRKSVGVEKTLAEDIYDW 256 >gi|34541416|ref|NP_905895.1| DNA polymerase type I [Porphyromonas gingivalis W83] gi|34397733|gb|AAQ66794.1| DNA polymerase type I [Porphyromonas gingivalis W83] Length = 926 Score = 43.2 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 10/51 (19%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 D I G IG LL +G++ I + + L +A KI Sbjct: 190 DNIPGCKGIGAKTAEKLLAEYGSIDGIY-AHQDELKG------AVAKKIQE 233 >gi|110633807|ref|YP_674015.1| DNA repair protein RadC [Mesorhizobium sp. BNC1] gi|110284791|gb|ABG62850.1| DNA repair protein RadC [Chelativorans sp. BNC1] Length = 251 Score = 43.2 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 18/36 (50%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 + LL FG++ + + + L +EGI + A + Sbjct: 75 KALLNRFGSIGEVLGAPEQRLREVEGIGEAAARDLK 110 >gi|297698143|ref|XP_002826187.1| PREDICTED: DNA repair endonuclease XPF-like [Pongo abelii] Length = 916 Score = 43.2 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 L ++ G+ R L+ + ++ S + L SI G + A ++Y+ H + + Sbjct: 852 LLKMPGVNAKNCRSLMHHVKNIAELATLSQDELTSILG-NAANAKQLYDFIHTSYAE 907 >gi|225175287|ref|ZP_03729282.1| helicase, RecD/TraA family [Dethiobacter alkaliphilus AHT 1] gi|225169039|gb|EEG77838.1| helicase, RecD/TraA family [Dethiobacter alkaliphilus AHT 1] Length = 724 Score = 43.2 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 5/61 (8%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKM--ISRSSPETLASIEGISKKIACKIYNHFH 608 + S L I G+GP +++ FG V I + P L +EGI K A I + Sbjct: 82 RFLASGL--IKGVGPSTAEKIVEHFG-VDALEIIENDPGRLCEVEGIGVKKAATISDSLA 138 Query: 609 K 609 + Sbjct: 139 E 139 >gi|209559128|ref|YP_002285600.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes NZ131] gi|254781429|sp|B5XKP3|DNLJ_STRPZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|209540329|gb|ACI60905.1| DNA ligase [Streptococcus pyogenes NZ131] Length = 652 Score = 43.2 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 28/54 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I IG RL+L+ +G + + + E +A I+G+ IA + +F + T+ Sbjct: 502 GIRHIGSKVSRLILEVYGDISALLTAKEEEIARIDGLGSTIAQSLTQYFEQKTA 555 >gi|94994051|ref|YP_602149.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS10750] gi|123257616|sp|Q1J7G9|DNLJ_STRPF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|94547559|gb|ABF37605.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS10750] Length = 652 Score = 43.2 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 28/54 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I IG RL+L+ +G + + + E +A I+G+ IA + +F + T+ Sbjct: 502 GIRHIGSKVSRLILEVYGDISALLTAKEEEIARIDGLGSTIAQSLTQYFEQKTA 555 >gi|71903217|ref|YP_280020.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS6180] gi|123761437|sp|Q48UE1|DNLJ_STRPM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|71802312|gb|AAX71665.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS6180] Length = 652 Score = 43.2 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 28/54 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I IG RL+L+ +G + + + E +A I+G+ IA + +F + T+ Sbjct: 502 GIRHIGSKVSRLILEVYGDISALLTAKEEEIARIDGLGSTIAQSLTQYFEQKTA 555 >gi|227875717|ref|ZP_03993845.1| DNA ligase (NAD(+)) [Mobiluncus mulieris ATCC 35243] gi|269976734|ref|ZP_06183710.1| DNA ligase, NAD-dependent [Mobiluncus mulieris 28-1] gi|227843659|gb|EEJ53840.1| DNA ligase (NAD(+)) [Mobiluncus mulieris ATCC 35243] gi|269935099|gb|EEZ91657.1| DNA ligase, NAD-dependent [Mobiluncus mulieris 28-1] Length = 917 Score = 43.2 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 R K + L I +GP+ R + + F T+ ++ + E L+ +EG+ IA + + Sbjct: 668 RSKETWRVLVALSIRHLGPVAARAVARRFPTLAAVAAADVEGLSQVEGVGAVIAASVVDW 727 Query: 607 FH 608 F Sbjct: 728 FR 729 >gi|150026465|ref|YP_001297291.1| protein Smf of unknown function [Flavobacterium psychrophilum JIP02/86] gi|149773006|emb|CAL44490.1| Protein Smf of unknown function [Flavobacterium psychrophilum JIP02/86] Length = 366 Score = 43.2 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 26/50 (52%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 L ++ G+G + + LL G+ + + + LA+I+GI K + + N Sbjct: 11 ALQKVEGVGDIMAKKLLNHCGSAEAVFTTKTSQLATIDGIGKVLLNNLKN 60 >gi|1303985|dbj|BAA12640.1| YqkH [Bacillus subtilis] Length = 294 Score = 43.2 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNH 606 PL + G+GP L ++FGT + ++ ++ E LA + + K A I Sbjct: 225 PLQFVPGVGPKTLDKLKKAFGTEMAVLHEAAEEDLARV--VPPKTAALIVKA 274 >gi|108808712|ref|YP_652628.1| DNA polymerase IV [Yersinia pestis Antiqua] gi|108811029|ref|YP_646796.1| DNA polymerase IV [Yersinia pestis Nepal516] gi|145600117|ref|YP_001164193.1| DNA polymerase IV [Yersinia pestis Pestoides F] gi|149364926|ref|ZP_01886961.1| DNA-damage-inducible protein P [Yersinia pestis CA88-4125] gi|161511436|ref|NP_992091.2| DNA polymerase IV [Yersinia pestis biovar Microtus str. 91001] gi|162421814|ref|YP_001607653.1| DNA polymerase IV [Yersinia pestis Angola] gi|165926575|ref|ZP_02222407.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. F1991016] gi|165935841|ref|ZP_02224411.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. IP275] gi|166212896|ref|ZP_02238931.1| DNA polymerase IV [Yersinia pestis biovar Antiqua str. B42003004] gi|167421635|ref|ZP_02313388.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423673|ref|ZP_02315426.1| DNA polymerase IV [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467178|ref|ZP_02331882.1| DNA polymerase IV [Yersinia pestis FV-1] gi|218930258|ref|YP_002348133.1| DNA polymerase IV [Yersinia pestis CO92] gi|229838837|ref|ZP_04458996.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896011|ref|ZP_04511181.1| DNA polymerase IV [Yersinia pestis Pestoides A] gi|229899406|ref|ZP_04514549.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. India 195] gi|229901251|ref|ZP_04516373.1| DNA polymerase IV [Yersinia pestis Nepal516] gi|294504948|ref|YP_003569010.1| DNA polymerase IV [Yersinia pestis Z176003] gi|22095621|sp|Q8ZBZ9|DPO4_YERPE RecName: Full=DNA polymerase IV; Short=Pol IV gi|123245611|sp|Q1C4D9|DPO4_YERPA RecName: Full=DNA polymerase IV; Short=Pol IV gi|123246681|sp|Q1CLD4|DPO4_YERPN RecName: Full=DNA polymerase IV; Short=Pol IV gi|189044621|sp|A4TPK8|DPO4_YERPP RecName: Full=DNA polymerase IV; Short=Pol IV gi|108774677|gb|ABG17196.1| DNA-damage-inducible protein P [Yersinia pestis Nepal516] gi|108780625|gb|ABG14683.1| DNA-damage-inducible protein P [Yersinia pestis Antiqua] gi|115348869|emb|CAL21825.1| DNA-damage-inducible protein P [Yersinia pestis CO92] gi|145211813|gb|ABP41220.1| DNA-damage-inducible protein P [Yersinia pestis Pestoides F] gi|149291339|gb|EDM41413.1| DNA-damage-inducible protein P [Yersinia pestis CA88-4125] gi|162354629|gb|ABX88577.1| DNA polymerase IV [Yersinia pestis Angola] gi|165915986|gb|EDR34593.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. IP275] gi|165921503|gb|EDR38700.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. F1991016] gi|166205683|gb|EDR50163.1| DNA polymerase IV [Yersinia pestis biovar Antiqua str. B42003004] gi|166960554|gb|EDR56575.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167057843|gb|EDR67589.1| DNA polymerase IV [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681180|gb|EEO77274.1| DNA polymerase IV [Yersinia pestis Nepal516] gi|229687808|gb|EEO79881.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. India 195] gi|229695203|gb|EEO85250.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700934|gb|EEO88963.1| DNA polymerase IV [Yersinia pestis Pestoides A] gi|262366936|gb|ACY63493.1| DNA polymerase IV [Yersinia pestis D182038] gi|294355407|gb|ADE65748.1| DNA polymerase IV [Yersinia pestis Z176003] Length = 352 Score = 43.2 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 29/80 (36%) Query: 556 PLDEINGIGPLRKRL-------------------LLQSFGTVKMI----------SRSSP 586 PL +I G+G + + LL+ FG + SP Sbjct: 177 PLSKIPGVGAVTAKRLQALGLVTCGDIQKYPLAELLKHFGKFGRVLWERSHGIDEREISP 236 Query: 587 ETLASIEGISKKIACKIYNH 606 + L G+ K +A IY+ Sbjct: 237 DRLRKSVGVEKTLAEDIYDW 256 >gi|321311837|ref|YP_004204124.1| hypothetical protein BSn5_02315 [Bacillus subtilis BSn5] gi|320018111|gb|ADV93097.1| hypothetical protein BSn5_02315 [Bacillus subtilis BSn5] Length = 387 Score = 43.2 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNH 606 PL + G+GP L ++FGT + ++ ++ E LA + + K A I Sbjct: 318 PLQFVPGVGPKTLDKLKKAFGTEMAVLHEAAEEDLARV--VPPKTAALIVKA 367 >gi|329954852|ref|ZP_08295869.1| DNA ligase [Bacteroides clarus YIT 12056] gi|328526956|gb|EGF53967.1| DNA ligase [Bacteroides clarus YIT 12056] Length = 665 Score = 43.2 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 24/45 (53%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + + +SF + + ++ E L +I+ I +KIA I +F Sbjct: 515 VGETVAKKIAKSFNDIDELENANLEKLINIDEIGEKIAQSILAYF 559 >gi|325958270|ref|YP_004289736.1| DNA mismatch repair protein MutS domain-containing protein [Methanobacterium sp. AL-21] gi|325329702|gb|ADZ08764.1| DNA mismatch repair protein MutS domain protein [Methanobacterium sp. AL-21] Length = 630 Score = 43.2 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKIYNHF 607 L +I GIG + +L SFG K R+ + L +IEG+S++ A +I N Sbjct: 3 LRDIKGIGERQADKILSSFGGEKEFYRAVKHYEVDKLTNIEGVSQRKAIEIINAL 57 >gi|75909996|ref|YP_324292.1| SMF protein [Anabaena variabilis ATCC 29413] gi|75703721|gb|ABA23397.1| SMF protein [Anabaena variabilis ATCC 29413] Length = 372 Score = 43.2 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 24/45 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 +I+G+GP+ R L Q FGT+ ++ L +EG + K+ Sbjct: 13 QISGVGPVLLRRLQQHFGTLAAAWNATQAQLGEVEGFGLQTLEKV 57 >gi|19745839|ref|NP_606975.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS8232] gi|94990137|ref|YP_598237.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS10270] gi|139474058|ref|YP_001128774.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes str. Manfredo] gi|81632934|sp|Q8P1L1|DNLJ_STRP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|123258039|sp|Q1JHP3|DNLJ_STRPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166216247|sp|A2RFD0|DNLJ_STRPG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|19747987|gb|AAL97474.1| putative DNA ligase [Streptococcus pyogenes MGAS8232] gi|94543645|gb|ABF33693.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS10270] gi|134272305|emb|CAM30559.1| DNA ligase [Streptococcus pyogenes str. Manfredo] Length = 652 Score = 43.2 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 28/54 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I IG RL+L+ +G + + + E +A I+G+ IA + +F + T+ Sbjct: 502 GIRHIGSKVSRLILEVYGDISALLTAKEEEIARIDGLGSTIAQSLTQYFEQKTA 555 >gi|320016419|gb|ADV99990.1| DNA polymerase IV [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 352 Score = 43.2 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 29/80 (36%) Query: 556 PLDEINGIGPLRKRL-------------------LLQSFGTVKMI----------SRSSP 586 PL +I G+G + + LL+ FG + SP Sbjct: 177 PLSKIPGVGAVTAKRLQALGLVTCGDIQKYPLAELLKHFGKFGRVLWERSHGIDEREISP 236 Query: 587 ETLASIEGISKKIACKIYNH 606 + L G+ K +A IY+ Sbjct: 237 DRLRKSVGVEKTLAEDIYDW 256 >gi|255767513|ref|NP_390241.2| hypothetical protein BSU23600 [Bacillus subtilis subsp. subtilis str. 168] gi|238054353|sp|P38423|YQXK_BACSU RecName: Full=Uncharacterized protein yqxK; AltName: Full=ORF2 gi|225185141|emb|CAB14292.2| conserved hypothetical protein [Bacillus subtilis subsp. subtilis str. 168] Length = 387 Score = 43.2 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNH 606 PL + G+GP L ++FGT + ++ ++ E LA + + K A I Sbjct: 318 PLQFVPGVGPKTLDKLKKAFGTEMAVLHEAAEEDLARV--VPPKTAALIVKA 367 >gi|167043918|gb|ABZ08606.1| putative DEAD/DEAH box helicase [uncultured marine crenarchaeote HF4000_APKG3H9] Length = 711 Score = 43.2 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 14/79 (17%) Query: 531 QRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETL 589 QR+ R+ I K L +I GIG +R R L ++ T + ++ +S L Sbjct: 644 QRI-----RYGI--------KEELIDLVKIKGIGRVRARRLYKNNIKTRQDLATTSVNQL 690 Query: 590 ASIEGISKKIACKIYNHFH 608 A+I+ I +A I + Sbjct: 691 AAIDKIGMAVANSIKSQLR 709 >gi|167042655|gb|ABZ07376.1| putative DEAD/DEAH box helicase [uncultured marine crenarchaeote HF4000_ANIW133M9] Length = 711 Score = 43.2 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 14/79 (17%) Query: 531 QRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETL 589 QR+ R+ I K L +I GIG +R R L ++ T + ++ +S L Sbjct: 644 QRI-----RYGI--------KEELIDLVKIKGIGRVRARRLYKNNIKTRQDLATTSVNQL 690 Query: 590 ASIEGISKKIACKIYNHFH 608 A+I+ I +A I + Sbjct: 691 AAIDKIGMAVANSIKSQLR 709 >gi|160889578|ref|ZP_02070581.1| hypothetical protein BACUNI_02004 [Bacteroides uniformis ATCC 8492] gi|317480069|ref|ZP_07939180.1| DNA ligase [Bacteroides sp. 4_1_36] gi|156861095|gb|EDO54526.1| hypothetical protein BACUNI_02004 [Bacteroides uniformis ATCC 8492] gi|316903746|gb|EFV25589.1| DNA ligase [Bacteroides sp. 4_1_36] Length = 665 Score = 43.2 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 24/45 (53%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + + +SF ++ + + E L +I+ I +KIA I +F Sbjct: 515 VGETVAKKIAKSFTDIEELENADLEKLKNIDEIGEKIAQSIITYF 559 >gi|257879529|ref|ZP_05659182.1| DNA repair protein RadC [Enterococcus faecium 1,230,933] gi|257883463|ref|ZP_05663116.1| DNA repair protein RadC [Enterococcus faecium 1,231,502] gi|257894826|ref|ZP_05674479.1| DNA repair protein RadC [Enterococcus faecium 1,231,408] gi|261209045|ref|ZP_05923449.1| DNA repair protein RadC [Enterococcus faecium TC 6] gi|289566560|ref|ZP_06446982.1| DNA repair protein RadC [Enterococcus faecium D344SRF] gi|257813757|gb|EEV42515.1| DNA repair protein RadC [Enterococcus faecium 1,230,933] gi|257819121|gb|EEV46449.1| DNA repair protein RadC [Enterococcus faecium 1,231,502] gi|257831205|gb|EEV57812.1| DNA repair protein RadC [Enterococcus faecium 1,231,408] gi|260076957|gb|EEW64680.1| DNA repair protein RadC [Enterococcus faecium TC 6] gi|289161659|gb|EFD09537.1| DNA repair protein RadC [Enterococcus faecium D344SRF] Length = 223 Score = 43.2 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 19/36 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 LL++FG + + +++ L I GI + A +I Sbjct: 52 NLLKTFGGLASLRQATLHELEEIRGIGRVKAIEIKA 87 >gi|188995635|ref|YP_001929887.1| DNA polymerase I [Porphyromonas gingivalis ATCC 33277] gi|188595315|dbj|BAG34290.1| DNA polymerase I [Porphyromonas gingivalis ATCC 33277] Length = 926 Score = 43.2 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 10/51 (19%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 D I G IG LL +G++ I + + L +A KI Sbjct: 190 DNIPGCKGIGAKTAEKLLAEYGSIDGIY-AHQDELKG------AVAKKIQE 233 >gi|169838010|ref|ZP_02871198.1| Excinuclease ABC subunit C [candidate division TM7 single-cell isolate TM7a] Length = 142 Score = 43.2 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 50/139 (35%), Gaps = 3/139 (2%) Query: 262 HFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETS--LLEISF 319 G+ + + + + + +Y + P++I+ E ++ + E + Sbjct: 5 REGKVINKNHIIISMERSQEES-LFERLITSYYEKRNIPKHIICDERFLQSEHLIKEWAK 63 Query: 320 FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP 379 +++ + +++E +N + Q L + K+ L P Sbjct: 64 IEKHKEVKLHFPKINSRRLQLLEMGYLNLREEVDKYYRKRRMVQEGLHNLKKELRLKSFP 123 Query: 380 KRIEIYDNSHIMGCSAVGC 398 RI+ +D S+I G AV Sbjct: 124 YRIDCFDISNIQGKDAVAA 142 >gi|167766753|ref|ZP_02438806.1| hypothetical protein CLOSS21_01259 [Clostridium sp. SS2/1] gi|167711507|gb|EDS22086.1| hypothetical protein CLOSS21_01259 [Clostridium sp. SS2/1] Length = 651 Score = 43.2 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 1/51 (1%) Query: 559 EINGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I +G +L+ + F I + E +I+ I IA + ++FH Sbjct: 496 GIPNVGLSNAKLICKHFKEDFNAIREADAEDFIAIDQIGPMIAEAMVSYFH 546 >gi|284165904|ref|YP_003404183.1| DNA-directed DNA polymerase [Haloterrigena turkmenica DSM 5511] gi|284015559|gb|ADB61510.1| DNA-directed DNA polymerase [Haloterrigena turkmenica DSM 5511] Length = 583 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 3/49 (6%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSP-ETLASIEGISKKIACKIYN 605 I G+GP L + G T+ + ++ + ++G K I Sbjct: 99 IEGVGPKTAGKLYRELGIETLDDLEEAAENNEIQEVKGFGPKTEQNIRE 147 >gi|270296700|ref|ZP_06202899.1| DNA ligase, NAD-dependent [Bacteroides sp. D20] gi|270272687|gb|EFA18550.1| DNA ligase, NAD-dependent [Bacteroides sp. D20] Length = 665 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 24/45 (53%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + + +SF ++ + + E L +I+ I +KIA I +F Sbjct: 515 VGETVAKKIAKSFTDIEELENADLEKLKNIDEIGEKIAQSIITYF 559 >gi|198284777|ref|YP_002221098.1| competence protein ComEA helix-hairpin-helix repeat-containing protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665419|ref|YP_002427462.1| competence protein ComEA helix-hairpin-helix repeat protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|198249298|gb|ACH84891.1| competence protein ComEA helix-hairpin-helix repeat protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517632|gb|ACK78218.1| competence protein ComEA helix-hairpin-helix repeat protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 135 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 12/57 (21%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKI 603 A + LD + GIGP + + +L+ ++ S + L S+ GI ++ ++ Sbjct: 29 ADATALDALPGIGPAKAQAVLEY-------RQAHGPFRSVDELTSVHGIGPRLLERL 78 >gi|314938909|ref|ZP_07846176.1| DNA repair protein RadC [Enterococcus faecium TX0133a04] gi|314943095|ref|ZP_07849896.1| DNA repair protein RadC [Enterococcus faecium TX0133C] gi|314948108|ref|ZP_07851509.1| DNA repair protein RadC [Enterococcus faecium TX0082] gi|314951626|ref|ZP_07854671.1| DNA repair protein RadC [Enterococcus faecium TX0133A] gi|314993869|ref|ZP_07859203.1| DNA repair protein RadC [Enterococcus faecium TX0133B] gi|314996710|ref|ZP_07861733.1| DNA repair protein RadC [Enterococcus faecium TX0133a01] gi|313589148|gb|EFR67993.1| DNA repair protein RadC [Enterococcus faecium TX0133a01] gi|313591679|gb|EFR70524.1| DNA repair protein RadC [Enterococcus faecium TX0133B] gi|313596222|gb|EFR75067.1| DNA repair protein RadC [Enterococcus faecium TX0133A] gi|313598197|gb|EFR77042.1| DNA repair protein RadC [Enterococcus faecium TX0133C] gi|313641783|gb|EFS06363.1| DNA repair protein RadC [Enterococcus faecium TX0133a04] gi|313645444|gb|EFS10024.1| DNA repair protein RadC [Enterococcus faecium TX0082] Length = 212 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 19/36 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 LL++FG + + +++ L I GI + A +I Sbjct: 34 NLLKTFGGLASLRQATLHELEEIRGIGRVKAIEIKA 69 >gi|50913936|ref|YP_059908.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS10394] gi|81372213|sp|Q5XCY8|DNLJ_STRP6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|50903010|gb|AAT86725.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS10394] Length = 652 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 28/54 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I IG RL+L+ +G + + + E +A I+G+ IA + +F + T+ Sbjct: 502 GIRHIGSKVSRLILEVYGDISALLTAKEEEIARIDGLGSTIAQSLTQYFEQKTA 555 >gi|73662477|ref|YP_301258.1| DNA uptake protein and related DNA-binding protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494992|dbj|BAE18313.1| putative DNA uptake protein and related DNA-binding protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 240 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 14/58 (24%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKI 603 A S L INGIGP + + +++ F +V E L + GI K KI Sbjct: 185 ATESQLLTINGIGPTKAKAIIEYRQQHGPFESV--------EQLKDVNGIGAKTLEKI 234 >gi|110640023|ref|YP_680233.1| DNA polymerase I [Cytophaga hutchinsonii ATCC 33406] gi|110282704|gb|ABG60890.1| DNA polymerase I [Cytophaga hutchinsonii ATCC 33406] Length = 946 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 3/33 (9%) Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLA 590 I GIG + L+ FG+V+ I + + L Sbjct: 194 GIPGIGEKTAQKLIADFGSVENLIKNA--DQLK 224 >gi|228476055|ref|ZP_04060763.1| ComE operon protein 1 [Staphylococcus hominis SK119] gi|314936290|ref|ZP_07843637.1| competence protein comEA [Staphylococcus hominis subsp. hominis C80] gi|228269878|gb|EEK11358.1| ComE operon protein 1 [Staphylococcus hominis SK119] gi|313654909|gb|EFS18654.1| competence protein comEA [Staphylococcus hominis subsp. hominis C80] Length = 220 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 14/58 (24%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L + GIGP + + +++ F + E L + GI K K+ ++F Sbjct: 169 ELLNVPGIGPTKVKEIIKYREEKGQFN--------NVEDLKQVRGIGGKTFEKLKDYF 218 >gi|69246244|ref|ZP_00603857.1| DNA repair protein RadC [Enterococcus faecium DO] gi|68195345|gb|EAN09794.1| DNA repair protein RadC [Enterococcus faecium DO] Length = 226 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 19/36 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 LL++FG + + +++ L I GI + A +I Sbjct: 48 NLLKTFGGLASLRQATLHELEEIRGIGRVKAIEIKA 83 >gi|333027152|ref|ZP_08455216.1| putative DNA-binding protein [Streptomyces sp. Tu6071] gi|332747004|gb|EGJ77445.1| putative DNA-binding protein [Streptomyces sp. Tu6071] Length = 322 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 14/57 (24%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNH 606 LD + G+GP+ + +L FG++ + L + GI ++ ++ + Sbjct: 271 QLDGLPGVGPVLAQRILDHRVAHGGFGSL--------DELREVTGIGERRFAELREY 319 >gi|303232308|ref|ZP_07319004.1| comEA protein [Atopobium vaginae PB189-T1-4] gi|302481594|gb|EFL44658.1| comEA protein [Atopobium vaginae PB189-T1-4] Length = 188 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 10/61 (16%) Query: 551 KAAYSPLDEINGIGPLRKRLLL----QSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 KA+ + L+ I GIGP + ++ Q G K + E L ++GI KK KI H Sbjct: 132 KASAANLETIPGIGPSTAQHIVADRAQH-GKFKRL-----EDLMRVKGIGKKKFEKIKPH 185 Query: 607 F 607 Sbjct: 186 I 186 >gi|323697702|ref|ZP_08109614.1| DNA ligase, NAD-dependent [Desulfovibrio sp. ND132] gi|323457634|gb|EGB13499.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans ND132] Length = 684 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 20/48 (41%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 I IG R L F + + ++ + L ++GI +A + + Sbjct: 518 GIRHIGEQAARTLAARFKNLDELFGATLDDLTGLDGIGDVMAESVLDF 565 >gi|299144358|ref|ZP_07037438.1| DNA ligase, NAD-dependent [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518843|gb|EFI42582.1| DNA ligase, NAD-dependent [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 664 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 19/50 (38%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 IN +G L F ++ + + L I+ I A +I F+ Sbjct: 509 GINNVGIKTAYDLANKFKDFDLLRHAKYDELVDIDDIGPITAKEIVEFFN 558 >gi|296454274|ref|YP_003661417.1| competence protein ComEA [Bifidobacterium longum subsp. longum JDM301] gi|296183705|gb|ADH00587.1| competence protein ComEA helix-hairpin-helix repeat protein [Bifidobacterium longum subsp. longum JDM301] Length = 259 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 8/47 (17%) Query: 556 PLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKI 599 L I GIGP+ + ++ G +S + L ++GI K Sbjct: 207 ELQSIKGIGPVTAQRIIDHRTAIGGY-----ASVDQLLDVKGIGSKT 248 >gi|237756074|ref|ZP_04584652.1| DNA polymerase I, thermostable [Sulfurihydrogenibium yellowstonense SS-5] gi|237691767|gb|EEP60797.1| DNA polymerase I, thermostable [Sulfurihydrogenibium yellowstonense SS-5] Length = 299 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 11/56 (19%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I GIGP LLQ FG+++ I L +++ K+ K+ F + Sbjct: 188 GIKGIGPKTAAALLQEFGSLENI-------LENVD----KLKGKLKESFKEVDKEQ 232 >gi|213691901|ref|YP_002322487.1| competence protein ComEA helix-hairpin-helix repeat protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523362|gb|ACJ52109.1| competence protein ComEA helix-hairpin-helix repeat protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458000|dbj|BAJ68621.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 259 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 8/47 (17%) Query: 556 PLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKI 599 L I GIGP+ + ++ G +S + L ++GI K Sbjct: 207 ELQSIKGIGPVTAQRIIDHRTAIGGY-----ASVDQLLDVKGIGSKT 248 >gi|239616446|ref|YP_002939768.1| competence protein ComEA helix-hairpin-helix repeat protein [Kosmotoga olearia TBF 19.5.1] gi|239505277|gb|ACR78764.1| competence protein ComEA helix-hairpin-helix repeat protein [Kosmotoga olearia TBF 19.5.1] Length = 264 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 21/78 (26%) Query: 556 PLDEINGIGPLRKRLL--LQSFGTVK-------------MISRSSPETLASIEGISKKIA 600 L + GIG + L G+V ++ ++ + L ++ GI +A Sbjct: 166 ELINVKGIGRATLDKIRNLVRVGSVSTNVPDKSENSGKINVNTATLQELVALPGIGPVLA 225 Query: 601 CKIYNH------FHKNTS 612 +I ++ FHK Sbjct: 226 ERIIDYREHNGKFHKPED 243 >gi|312891159|ref|ZP_07750681.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603] gi|311296326|gb|EFQ73473.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603] Length = 936 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 10/58 (17%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPE---------TLASIEG-ISKKIACKIYNH 606 I G+G + L++ +G+++ I S E + +G ISKK+A I + Sbjct: 194 GIPGVGEKTAKSLIKQYGSMENIIAHSHELKGKLRENIETHAQQGLISKKLATIILDA 251 >gi|295394824|ref|ZP_06805039.1| competence protein [Brevibacterium mcbrellneri ATCC 49030] gi|294972420|gb|EFG48280.1| competence protein [Brevibacterium mcbrellneri ATCC 49030] Length = 245 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 14/54 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKI 603 L E+ G+GP +++ F ++ E L + GI I ++ Sbjct: 194 ELQELPGVGPATSEAIIKHREENGRFESI--------EELEDVPGIGPAILERL 239 >gi|293557235|ref|ZP_06675783.1| DNA repair protein RadC [Enterococcus faecium E1039] gi|291600599|gb|EFF30903.1| DNA repair protein RadC [Enterococcus faecium E1039] Length = 230 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 19/36 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 LL++FG + + +++ L I GI + A +I Sbjct: 52 NLLKTFGGLASLRQATLHELEEIRGIGRVKAIEIKA 87 >gi|261211985|ref|ZP_05926271.1| DNA ligase [Vibrio sp. RC341] gi|260838593|gb|EEX65244.1| DNA ligase [Vibrio sp. RC341] Length = 670 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 25/51 (49%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 +G L Q F T++ I++++ E L + + +A ++ F ++ + Sbjct: 520 VGEATALNLAQHFLTLEAIAQATMEQLIEVSDVGNVVAGHLHAFFAQSRNQ 570 >gi|227550362|ref|ZP_03980411.1| DNA repair protein RadC [Enterococcus faecium TX1330] gi|227180501|gb|EEI61473.1| DNA repair protein RadC [Enterococcus faecium TX1330] Length = 225 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 19/36 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 LL++FG + + +++ L I GI + A +I Sbjct: 47 NLLKTFGGLASLRQATLHELEEIRGIGRVKAIEIKA 82 >gi|220906286|ref|YP_002481597.1| DNA polymerase I [Cyanothece sp. PCC 7425] gi|219862897|gb|ACL43236.1| DNA polymerase I [Cyanothece sp. PCC 7425] Length = 982 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 4/36 (11%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590 D I G IGP LL FG+++ I + S + + Sbjct: 218 DNIPGVRGIGPKTAVQLLSQFGSLEQIYQ-SLDQIK 252 >gi|331001976|ref|ZP_08325496.1| RecD/TraA family helicase [Lachnospiraceae oral taxon 107 str. F0167] gi|330411772|gb|EGG91177.1| RecD/TraA family helicase [Lachnospiraceae oral taxon 107 str. F0167] Length = 744 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%) Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHF 607 +K S I G+G + +++ F T+ + PE LA ++G+S K+A I Sbjct: 80 QKYLASS--AIKGVGEALAKRIVKKFKMDTL-RVMEEEPERLAEVKGVSAKLAKSISEQI 136 Query: 608 HKNTS 612 + S Sbjct: 137 QEKKS 141 >gi|313890529|ref|ZP_07824157.1| DNA ligase (NAD+) [Streptococcus pseudoporcinus SPIN 20026] gi|313121046|gb|EFR44157.1| DNA ligase (NAD+) [Streptococcus pseudoporcinus SPIN 20026] Length = 652 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 31/56 (55%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G RLLL++FG ++ + +S+ + +A I+G+ IA + +F K + Sbjct: 502 GIRHVGEKASRLLLETFGDIETLMQSNEDAIAQIDGLGHVIANSLAQYFAKPEAQQ 557 >gi|317049042|ref|YP_004116690.1| DNA ligase, NAD-dependent [Pantoea sp. At-9b] gi|316950659|gb|ADU70134.1| DNA ligase, NAD-dependent [Pantoea sp. At-9b] Length = 672 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 29/68 (42%), Gaps = 6/68 (8%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 KA ++ L I +G L FG ++ + + + L +++ + + +A + Sbjct: 502 KAKFTTLPRFLYALGIREVGEATAANLANHFGELEKVMDADLDALIAVQDVGQVVASHVR 561 Query: 605 NHFHKNTS 612 N + ++ Sbjct: 562 NFMDEESN 569 >gi|257885023|ref|ZP_05664676.1| DNA repair protein RadC [Enterococcus faecium 1,231,501] gi|257890249|ref|ZP_05669902.1| DNA repair protein RadC [Enterococcus faecium 1,231,410] gi|258616808|ref|ZP_05714578.1| DNA repair protein RadC [Enterococcus faecium DO] gi|260559754|ref|ZP_05831934.1| DNA repair protein RadC [Enterococcus faecium C68] gi|293559749|ref|ZP_06676270.1| DNA repair protein RadC [Enterococcus faecium E1162] gi|293567615|ref|ZP_06678959.1| DNA repair protein RadC [Enterococcus faecium E1071] gi|257820875|gb|EEV48009.1| DNA repair protein RadC [Enterococcus faecium 1,231,501] gi|257826609|gb|EEV53235.1| DNA repair protein RadC [Enterococcus faecium 1,231,410] gi|260074422|gb|EEW62744.1| DNA repair protein RadC [Enterococcus faecium C68] gi|291589716|gb|EFF21520.1| DNA repair protein RadC [Enterococcus faecium E1071] gi|291606297|gb|EFF35710.1| DNA repair protein RadC [Enterococcus faecium E1162] Length = 230 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 19/36 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 LL++FG + + +++ L I GI + A +I Sbjct: 52 NLLKTFGGLASLRQATLHELEEIRGIGRVKAIEIKA 87 >gi|158312222|ref|YP_001504730.1| DNA integrity scanning protein DisA [Frankia sp. EAN1pec] gi|226729442|sp|A8LF79|DISA_FRASN RecName: Full=DNA integrity scanning protein disA gi|158107627|gb|ABW09824.1| protein of unknown function DUF147 [Frankia sp. EAN1pec] Length = 359 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 6/38 (15%), Positives = 18/38 (47%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L+ F T++ + + + L +++G+ + A + Sbjct: 309 RLVDHFSTLQKLLAAGVDDLQAVDGVGETRARAVREGL 346 >gi|315446225|ref|YP_004079104.1| nucleic-acid-binding protein (contains the HHH domain) [Mycobacterium sp. Spyr1] gi|315264528|gb|ADU01270.1| predicted nucleic-acid-binding protein (contains the HHH domain) [Mycobacterium sp. Spyr1] Length = 373 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 22/44 (50%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 L+++FG+++ + +S L S+EGI A I + T Sbjct: 324 LVRNFGSLQGLLAASASDLQSVEGIGSMWARHIREGLSQLAEST 367 >gi|157804146|ref|YP_001492695.1| DNA polymerase I [Rickettsia canadensis str. McKiel] gi|157785409|gb|ABV73910.1| DNA polymerase I [Rickettsia canadensis str. McKiel] Length = 875 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 4/39 (10%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 D I G IGP L+ FG+++ I S + ++S++ Sbjct: 186 DNIPGVPSIGPKTASSLITQFGSIENIFN-SLDQISSVK 223 >gi|315055791|ref|XP_003177270.1| DNA repair protein rad16 [Arthroderma gypseum CBS 118893] gi|311339116|gb|EFQ98318.1| DNA repair protein rad16 [Arthroderma gypseum CBS 118893] Length = 973 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 13/77 (16%) Query: 545 HRKRRKKAAYSPL--DEI---NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 HR +S L D I G+ P L+ + ++ S E L + K+ Sbjct: 901 HR------VFSLLPQDMIRAVPGVEPKTLERLILETKNIHEVANMSVEQLE--PLVGKEA 952 Query: 600 ACKIYNHFHKNTSHTPT 616 A KI+ F ++ T Sbjct: 953 ARKIFKFFTRSVFDAET 969 >gi|148263726|ref|YP_001230432.1| phosphotransferase domain-containing protein [Geobacter uraniireducens Rf4] gi|146397226|gb|ABQ25859.1| PHP C-terminal domain protein [Geobacter uraniireducens Rf4] Length = 577 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 7/71 (9%) Query: 541 AITTHRKRRKKA---AYSPLDEINGIGPLRKRLLL--QSFGTVKMISRSSPE-TLASIEG 594 AI H K + + S L + G+GP R + + ++ + R++ E LA I G Sbjct: 74 AIHAHDKLKGEIPSGLLS-LLAVPGLGPKTARQIFEQRHIASIDDLERAAREHKLAGIPG 132 Query: 595 ISKKIACKIYN 605 I KK I Sbjct: 133 IQKKTEENILK 143 >gi|323352682|ref|ZP_08087652.1| competence protein CelA [Streptococcus sanguinis VMC66] gi|322121718|gb|EFX93464.1| competence protein CelA [Streptococcus sanguinis VMC66] Length = 243 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 L I+GIG R ++ + S + L + GI K K+ + Sbjct: 191 ELQTISGIGQKRASDIIAYRESNGRFK--SVDDLKKVSGIGDKTLEKLKEY 239 >gi|313676995|ref|YP_004054991.1| DNA protecting protein dpra [Marivirga tractuosa DSM 4126] gi|312943693|gb|ADR22883.1| DNA protecting protein DprA [Marivirga tractuosa DSM 4126] Length = 368 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 KA S L I IG + + L+ G+ + + L I GI +K I Sbjct: 6 KALLS-LHLIPKIGNITIKSLISHCGSAQAVLDLPQSKLLKIPGIGQKTIDNI 57 >gi|300088789|ref|YP_003759311.1| DNA repair protein RadC [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528522|gb|ADJ26990.1| DNA repair protein RadC [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 263 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 15/35 (42%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 + L F +++ + + E L + GI + I Sbjct: 70 KAALARFKSLRGVLEAPVEELTQVPGIGPVNSTAI 104 >gi|294101601|ref|YP_003553459.1| DNA repair protein RadC [Aminobacterium colombiense DSM 12261] gi|293616581|gb|ADE56735.1| DNA repair protein RadC [Aminobacterium colombiense DSM 12261] Length = 224 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISK-KIA 600 LL FG +K IS++S + ++G+ K K+A Sbjct: 50 LLHLFGGLKGISKASISEILQVKGMGKAKVA 80 >gi|317051804|ref|YP_004112920.1| DNA polymerase I [Desulfurispirillum indicum S5] gi|316946888|gb|ADU66364.1| DNA polymerase I [Desulfurispirillum indicum S5] Length = 881 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 4/40 (10%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 D I G IGP + LL+ +GT+ I + + ++ G Sbjct: 184 DNIPGVKGIGPKSAQKLLEQYGTLDNIY-AHVDEISGAVG 222 >gi|302680174|ref|XP_003029769.1| hypothetical protein SCHCODRAFT_42481 [Schizophyllum commune H4-8] gi|300103459|gb|EFI94866.1| hypothetical protein SCHCODRAFT_42481 [Schizophyllum commune H4-8] Length = 185 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%) Query: 553 AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 S L I+ + L SFG+ I+R+S + L+++ G + I N F K Sbjct: 123 LRSALTSISKVNKTDVETLRTSFGSFADIARASSDQLSNLPGFGQVKVKNIKNAFEK 179 >gi|257888395|ref|ZP_05668048.1| DNA repair protein RadC [Enterococcus faecium 1,141,733] gi|257824449|gb|EEV51381.1| DNA repair protein RadC [Enterococcus faecium 1,141,733] Length = 230 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 19/36 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 LL++FG + + +++ L I GI + A +I Sbjct: 52 NLLKTFGGLASLRQATLHELEEIRGIGRVKAIEIKA 87 >gi|302874957|ref|YP_003843590.1| Holliday junction DNA helicase RuvA [Clostridium cellulovorans 743B] gi|307690425|ref|ZP_07632871.1| Holliday junction DNA helicase RuvA [Clostridium cellulovorans 743B] gi|302577814|gb|ADL51826.1| Holliday junction DNA helicase RuvA [Clostridium cellulovorans 743B] Length = 194 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 5/55 (9%) Query: 553 AYSPLDEINGIGPLRKRLLLQSFGTVKMIS--RSSPET--LASIEGISKKIACKI 603 ++ L ING+G LL GTV + ++ + + GI KK A +I Sbjct: 71 LFTMLLNINGVGTKAALSLLS-IGTVNNLKYAIATSDENFITKAPGIGKKTAQRI 124 >gi|46445706|ref|YP_007071.1| putative protein required for chromosomal DNA transformation [Candidatus Protochlamydia amoebophila UWE25] gi|46399347|emb|CAF22796.1| putative protein required for chromosomal DNA transformation [Candidatus Protochlamydia amoebophila UWE25] Length = 363 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 4/58 (6%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 L ++ IGP++ R L+ FG+ K +S L+ + G KI + + ++ Sbjct: 9 ILTDMPLIGPVKVRFLVDYFGSAKKALSASITELSHLPGFK----QKILDQWQEHIRS 62 >gi|319407733|emb|CBI81380.1| holliday junction DNA helicase RuvA [Bartonella sp. 1-1C] Length = 215 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 27/118 (22%) Query: 509 KFFVKKGEALVLNMRDPILYFI--QRLRDEAHR---FAITTHRKRRKKAAYSP------L 557 F+ L L +R+EA R FA S L Sbjct: 27 IIFIPNRLHSSLPAIGESLSLFIETHVREEAIRLFGFA-----------TKSEQEWFCLL 75 Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRS-SPETLASI---EGISKKIACKIYNHFHKNT 611 + G+G +L S +V ++++ + +A+I G+ KK++ +I + T Sbjct: 76 QNVPGVGAKVALAILGSL-SVNELTQAITLNDIATISRAPGVGKKVSERIVSELKNKT 132 >gi|319404769|emb|CBI78370.1| holliday junction DNA helicase RuvA [Bartonella rochalimae ATCC BAA-1498] Length = 215 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 27/118 (22%) Query: 509 KFFVKKGEALVLNMRDPILYFI--QRLRDEAHR---FAITTHRKRRKKAAYSP------L 557 F+ L L +R+EA R FA S L Sbjct: 27 IIFIPNRLHSSLPAIGESLSLFIETHVREEAIRLFGFA-----------TKSEQEWFCLL 75 Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRS-SPETLASI---EGISKKIACKIYNHFHKNT 611 + G+G +L S +V ++++ + +A+I G+ KK++ +I + T Sbjct: 76 QNVPGVGAKVALAILGSL-SVNELTQAITLNDIATISRTPGVGKKVSERIVSELKNKT 132 >gi|313203476|ref|YP_004042133.1| holliday junction DNA helicase subunit ruva [Paludibacter propionicigenes WB4] gi|312442792|gb|ADQ79148.1| Holliday junction DNA helicase subunit RuvA [Paludibacter propionicigenes WB4] Length = 196 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 7/87 (8%) Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580 LY + +R++AH + R + ++ + L ++GIG R+++ S+ + + Sbjct: 40 EHTSAKLYVYESIREDAH--VLYGFRLQSERQLFLLLISVSGIGANTARMIMSSY-SAQE 96 Query: 581 ISR--SS--PETLASIEGISKKIACKI 603 I +S L +I+GI K A +I Sbjct: 97 IQDMIASGNVSALNAIKGIGTKTAQRI 123 >gi|229065415|ref|ZP_04200668.1| hypothetical protein bcere0026_54300 [Bacillus cereus AH603] gi|228715863|gb|EEL67629.1| hypothetical protein bcere0026_54300 [Bacillus cereus AH603] Length = 73 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 19 AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIK 78 +L+VGK +++RIK + N + ++ I + +E + E MI Sbjct: 2 NDELLFVGKVRKVRQRIKKHFEDNVSPIKNHR--DEVYRIDVCIVENPMEREIYETYMIN 59 Query: 79 RLKPRFNI 86 + ++N+ Sbjct: 60 EFQAKYNV 67 >gi|322385784|ref|ZP_08059428.1| competence protein CelA [Streptococcus cristatus ATCC 51100] gi|321270522|gb|EFX53438.1| competence protein CelA [Streptococcus cristatus ATCC 51100] Length = 231 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 12/60 (20%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYNH 606 A + L ++GIG + + ++ + S + L ++ GI K K+ ++ Sbjct: 174 ATEAELQTVSGIGQKKAQDIIAY-------REANGKFKSVDELKNVSGIGAKTLEKLKDY 226 >gi|294670237|ref|ZP_06735130.1| DNA topoisomerase [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307974|gb|EFE49217.1| DNA topoisomerase [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 150 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 15/67 (22%) Query: 557 LDEINGIGPLRKRLLLQSFG--TVK---------MISRSSPETLASIEGISKKIACKIYN 605 L+ I G K+ L FG + I+ ++ E L ++ GI A I + Sbjct: 33 LELIKK-GAGMKKAL---FGLLSYAVTALALAAVNINTATVEELKALPGIGPAKAQAIVD 88 Query: 606 HFHKNTS 612 + +N + Sbjct: 89 YRKENGN 95 Score = 39.3 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L + GIGP + + ++ F +V E L ++GI + I K+ + Sbjct: 71 ELKALPGIGPAKAQAIVDYRKENGNFKSV--------EDLKKVKGIGEGIFGKLKD 118 >gi|251773315|gb|EES53864.1| hypothetical protein UBAL3_44810002 [Leptospirillum ferrodiazotrophum] Length = 174 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 4/61 (6%) Query: 6 MPECPGVY----QMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 +P PGVY M ++Y+G + NL++R+ ++ + + R+ IS R+ Sbjct: 83 VPYEPGVYEIRSFMPGTPEGIVYIGSSGNLRRRLAHHLTGSGNNLRLREKISGGARFRYQ 142 Query: 62 V 62 V Sbjct: 143 V 143 >gi|55379625|ref|YP_137475.1| NAD-dependent DNA ligase LigA [Haloarcula marismortui ATCC 43049] gi|74516349|sp|Q5UY84|DNLJ_HALMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|55232350|gb|AAV47769.1| DNA ligase [Haloarcula marismortui ATCC 43049] Length = 691 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 4/53 (7%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKIYNHF 607 I +G + R L Q FGT + I + + ++ + + +A I F Sbjct: 532 GIPEVGTVTARNLAQEFGTFEAILDAADEGDTDAFEAVPDVGQTVARSIVEFF 584 >gi|47095437|ref|ZP_00233047.1| comE operon protein 1 [Listeria monocytogenes str. 1/2a F6854] gi|258612162|ref|ZP_05268183.2| comE operon protein 1 [Listeria monocytogenes F6900] gi|293596550|ref|ZP_05262170.2| comE operon protein 1 [Listeria monocytogenes J2818] gi|47016258|gb|EAL07181.1| comE operon protein 1 [Listeria monocytogenes str. 1/2a F6854] gi|258609079|gb|EEW21687.1| comE operon protein 1 [Listeria monocytogenes F6900] gi|293590130|gb|EFF98464.1| comE operon protein 1 [Listeria monocytogenes J2818] Length = 211 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 25/51 (49%), Gaps = 2/51 (3%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L ++ GIG + +++ + + + + E L ++ GI +K K+ + Sbjct: 160 LQQVPGIGESKATAIIEY-REKEGLFQ-TIEDLKNVSGIGEKTVEKLKEYL 208 >gi|182420014|ref|ZP_02951248.1| DNA integrity scanning protein DisA [Clostridium butyricum 5521] gi|237666430|ref|ZP_04526415.1| DNA integrity scanning protein DisA [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376051|gb|EDT73638.1| DNA integrity scanning protein DisA [Clostridium butyricum 5521] gi|237657629|gb|EEP55184.1| DNA integrity scanning protein DisA [Clostridium butyricum E4 str. BoNT E BL5262] Length = 354 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 22/54 (40%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L ++ I L++ F + I + + L +EGI + A I N + Sbjct: 290 ILSKVPRIPSNVIENLIKEFEDLSSIIEADIDDLDKVEGIGEARATAIKNGLKR 343 >gi|58038327|ref|YP_190296.1| hypothetical protein GOX2576 [Gluconobacter oxydans 621H] gi|58000741|gb|AAW59640.1| hypothetical protein GOX2576 [Gluconobacter oxydans 621H] Length = 146 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 25/103 (24%) Query: 6 MPECPGVYQMLDIAGRVLYVGKA-YNLQKRIKSYMHSNNHT--HRITHMISQ------IN 56 +P PGVY + VLYVG A L KR++ Y S N RI + + + Sbjct: 43 VPSKPGVYA-YAVDQEVLYVGSAQRGLHKRLRHYESSKNLRTATRIREAVLERLSHGTVV 101 Query: 57 NIRFTVTCTEVEALL------------LEANMIKRLKPRFNIL 87 ++ V E L LE +I+ +KP +N Sbjct: 102 DVYVIVLE---EPLTLHGGLPVDPVAGLEEGLIRDIKPTWNRR 141 >gi|15896108|ref|NP_349457.1| ATP-dependent exoDNAse (exonuclease V), alpha subunit, RecD [Clostridium acetobutylicum ATCC 824] gi|15025899|gb|AAK80797.1|AE007783_4 ATP-dependent exoDNAse (exonuclease V), alpha subunit, RecD [Clostridium acetobutylicum ATCC 824] gi|325510262|gb|ADZ21898.1| ATP-dependent exoDNAse (exonuclease V), alpha subunit [Clostridium acetobutylicum EA 2018] Length = 739 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 3/52 (5%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I+GIGP+ + ++ FG T++ I + L+ IEGI KK KIY + + Sbjct: 89 ISGIGPVTAKKIVNKFGEKTLE-ILDNDIYRLSEIEGIGKKKIDKIYEAYSE 139 >gi|15613787|ref|NP_242090.1| Holliday junction DNA helicase RuvA [Bacillus halodurans C-125] gi|20140284|sp|Q9KDI9|RUVA_BACHD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|10173840|dbj|BAB04943.1| holliday junction DNA helicase [Bacillus halodurans C-125] Length = 203 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 8/99 (8%) Query: 510 FFVKKGEALVLNMRD-PILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRK 568 + +Y Q +R++ R + R + K++ + L ++GIGP Sbjct: 28 VYCPNPYEFEKERDSVITIYTFQYVREDVIR--LYGFRTKEKRSLFEKLLNVSGIGPKGA 85 Query: 569 RLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603 +L + G + + ++ E L G+ KK A +I Sbjct: 86 LAILAT-GQPEHVIQAIEEEDEAFLVKFPGVGKKTARQI 123 >gi|332799163|ref|YP_004460662.1| DNA protecting protein DprA [Tepidanaerobacter sp. Re1] gi|332696898|gb|AEE91355.1| DNA protecting protein DprA [Tepidanaerobacter sp. Re1] Length = 364 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 A L+ I +G ++ + L + F ++ PE L I GI K I I Sbjct: 4 NALLIALNAIPKLGSIKIQSLAEKFKCYDDFLKAKPEDLLEIPGIGKIICENI 56 >gi|242220518|ref|XP_002476024.1| predicted protein [Postia placenta Mad-698-R] gi|220724747|gb|EED78769.1| predicted protein [Postia placenta Mad-698-R] Length = 186 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + L I+ + L SFG+ ISR++ E L ++ G + A ++ + K Sbjct: 127 MLRTALTSISKVNKTDVETLRTSFGSFAAISRATTEQLQNLPGFGQVKAKRVVDALEK 184 >gi|325290555|ref|YP_004266736.1| competence protein ComEA helix-hairpin-helix repeat protein [Syntrophobotulus glycolicus DSM 8271] gi|324965956|gb|ADY56735.1| competence protein ComEA helix-hairpin-helix repeat protein [Syntrophobotulus glycolicus DSM 8271] Length = 191 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 LD I GIGP + ++ + +PE L ++ GI +K K+ + Sbjct: 138 ELDRIPGIGPALAKRIIDYRKD-NGLYN-TPEDLKNVSGIGEKTYEKMSGYL 187 >gi|284051638|ref|ZP_06381848.1| DNA protecting protein DprA [Arthrospira platensis str. Paraca] Length = 377 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 28/45 (62%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 +I+GIGP+ + L + FG++ ++SP L S+EG ++ K+ Sbjct: 13 QIHGIGPITLQRLQERFGSLATAWQASPMELGSVEGFGRQSLEKV 57 >gi|289580814|ref|YP_003479280.1| DNA-directed DNA polymerase [Natrialba magadii ATCC 43099] gi|289530367|gb|ADD04718.1| DNA-directed DNA polymerase [Natrialba magadii ATCC 43099] Length = 586 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 3/49 (6%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPE-TLASIEGISKKIACKIYN 605 I G+GP L + G T+ + ++ + ++G K I + Sbjct: 102 IEGVGPKTAGKLYRELGIETLDDLEDAAEAGEIQEVKGFGPKTEENIRD 150 >gi|218131107|ref|ZP_03459911.1| hypothetical protein BACEGG_02712 [Bacteroides eggerthii DSM 20697] gi|217986811|gb|EEC53144.1| hypothetical protein BACEGG_02712 [Bacteroides eggerthii DSM 20697] Length = 666 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 24/45 (53%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + + +SF ++ + + E L SI+ I +KIA I +F Sbjct: 516 VGETVAKKIAKSFNNIEELENADLEKLTSIDEIGEKIAQSILIYF 560 >gi|169629277|ref|YP_001702926.1| 5'-3' exonuclease [Mycobacterium abscessus ATCC 19977] gi|169241244|emb|CAM62272.1| Probable 5'-3' exonuclease [Mycobacterium abscessus] Length = 337 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 8/28 (28%), Positives = 13/28 (46%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584 L + G+G LL FG++ I + Sbjct: 228 LPGVPGVGEKTAAKLLAEFGSLDGILTA 255 >gi|82701529|ref|YP_411095.1| DNA processing protein DprA, putative [Nitrosospira multiformis ATCC 25196] gi|82409594|gb|ABB73703.1| DNA protecting protein DprA [Nitrosospira multiformis ATCC 25196] Length = 372 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 LD I+G+G R LL +FG+ I +S +L + + +K+A I Sbjct: 23 ALDLIDGLGDESMRCLLATFGSPAAILSASMTSLERV--VKRKVADNI 68 >gi|17230931|ref|NP_487479.1| hypothetical protein all3439 [Nostoc sp. PCC 7120] gi|17132572|dbj|BAB75138.1| all3439 [Nostoc sp. PCC 7120] Length = 125 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 4/40 (10%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH 44 +P PG+Y + +LY+GK +L+ R + Sbjct: 36 DIPPHPGIYAIRHKNDGLLYIGKTKSLRGR----FSGGHK 71 >gi|255030876|ref|ZP_05302827.1| hypothetical protein LmonL_20341 [Listeria monocytogenes LO28] Length = 199 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 25/51 (49%), Gaps = 2/51 (3%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L ++ GIG + +++ + + + + E L ++ GI +K K+ + Sbjct: 148 LQQVPGIGESKATAIIEY-REKEGLFQ-TIEDLKNVSGIGEKTVEKLKEYL 196 >gi|70608422|gb|AAZ04486.1| DNA repair protein RadC [Acetobacter aceti] Length = 274 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 16/74 (21%) Query: 543 TTHRKR-RKKAAYS---------PLDEINGIGPLRK------RLLLQSFGTVKMISRSSP 586 T HRKR R++ L+ + +G RK + L+ +FG+ + + + Sbjct: 44 TGHRKRMRQRVMAQGAAALADYELLEMLLYVGVPRKDTKPLAKSLINAFGSFQAVIEAKE 103 Query: 587 ETLASIEGISKKIA 600 E L I G+++ A Sbjct: 104 EDLRQIGGVTRASA 117 >gi|145222033|ref|YP_001132711.1| DNA integrity scanning protein DisA [Mycobacterium gilvum PYR-GCK] gi|145214519|gb|ABP43923.1| protein of unknown function DUF147 [Mycobacterium gilvum PYR-GCK] Length = 373 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 22/44 (50%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 L+++FG+++ + +S L S++GI A I + T Sbjct: 324 LVRNFGSLQGLLAASASDLQSVDGIGSMWARHIREGLSQLAEST 367 >gi|317477010|ref|ZP_07936252.1| DNA ligase [Bacteroides eggerthii 1_2_48FAA] gi|316906803|gb|EFV28515.1| DNA ligase [Bacteroides eggerthii 1_2_48FAA] Length = 666 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 24/45 (53%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + + +SF ++ + + E L SI+ I +KIA I +F Sbjct: 516 VGETVAKKIAKSFNNIEELENADLEKLTSIDEIGEKIAQSILIYF 560 >gi|257897231|ref|ZP_05676884.1| DNA repair protein RadC [Enterococcus faecium Com12] gi|293378003|ref|ZP_06624181.1| DNA repair protein RadC [Enterococcus faecium PC4.1] gi|293570378|ref|ZP_06681435.1| DNA repair protein RadC [Enterococcus faecium E980] gi|257833796|gb|EEV60217.1| DNA repair protein RadC [Enterococcus faecium Com12] gi|291609556|gb|EFF38821.1| DNA repair protein RadC [Enterococcus faecium E980] gi|292643368|gb|EFF61500.1| DNA repair protein RadC [Enterococcus faecium PC4.1] Length = 230 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 19/36 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 LL++FG + + +++ L I GI + A +I Sbjct: 52 NLLKTFGGLASLRQATLHELEEIRGIGRVKAIEIKA 87 >gi|164686703|ref|ZP_02210731.1| hypothetical protein CLOBAR_00298 [Clostridium bartlettii DSM 16795] gi|164604093|gb|EDQ97558.1| hypothetical protein CLOBAR_00298 [Clostridium bartlettii DSM 16795] Length = 674 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 23/54 (42%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I IG ++L F + + ++ + L ++E + +A + F + + Sbjct: 508 GIKLIGTKAAKILASEFKDLDKLMSATEQELINLEEFGQTMADSVVEFFKEEKN 561 >gi|150005913|ref|YP_001300657.1| exonuclease V subunit alpha [Bacteroides vulgatus ATCC 8482] gi|149934337|gb|ABR41035.1| ATP-dependent exonuclease V, alpha subunit - helicase superfamily I member [Bacteroides vulgatus ATCC 8482] Length = 753 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603 K S L + GIGP +L+++ FG T+ +I E L + GI KK KI Sbjct: 83 KYLGSGL--VKGIGPKFAQLIVRQFGLETIDVIET-DIERLYEVPGIGKKRVEKI 134 >gi|157961514|ref|YP_001501548.1| DNA ligase, NAD-dependent [Shewanella pealeana ATCC 700345] gi|190359287|sp|A8H376|DNLJ_SHEPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157846514|gb|ABV87013.1| DNA ligase, NAD-dependent [Shewanella pealeana ATCC 700345] Length = 668 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 7/45 (15%), Positives = 18/45 (40%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G L F T++ + +S E ++ + +A + + Sbjct: 520 VGEATAANLAAYFKTLEALKAASAEEFIKVDDVGTIVAAHLAHFL 564 >gi|157136934|ref|XP_001663869.1| excision repair cross-complementing 1 ercc1 [Aedes aegypti] gi|108869820|gb|EAT34045.1| excision repair cross-complementing 1 ercc1 [Aedes aegypti] Length = 249 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 29/58 (50%) Query: 553 AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 S L I + L+Q++GT+ + SS E L+ G+ + A K++ F++N Sbjct: 188 LVSALTNIKPVNKTDAMTLIQNYGTLANMINSSEEKLSLCSGLGPRKAKKLHKTFNEN 245 >gi|161501897|ref|YP_219549.2| Holliday junction DNA helicase motor protein [Chlamydophila abortus S26/3] gi|90134722|sp|Q5L6Z3|RUVA_CHLAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA Length = 207 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%) Query: 562 GIGPLRKRLLLQSFGTVKM---ISRS-SPETLASIEGISKKIACKI 603 G+GP +L +F ++ I+R+ + +AS+ GI KK A K+ Sbjct: 81 GVGPKTGLAILNTF-SLSQLCSIARAEDIKAIASVPGIGKKTAEKL 125 >gi|62147831|emb|CAH63577.1| putative holliday junction DNA helicase RuvA [Chlamydophila abortus S26/3] Length = 222 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%) Query: 562 GIGPLRKRLLLQSFGTVKM---ISRS-SPETLASIEGISKKIACKI 603 G+GP +L +F ++ I+R+ + +AS+ GI KK A K+ Sbjct: 96 GVGPKTGLAILNTF-SLSQLCSIARAEDIKAIASVPGIGKKTAEKL 140 >gi|329767007|ref|ZP_08258535.1| DNA ligase [Gemella haemolysans M341] gi|328837732|gb|EGF87357.1| DNA ligase [Gemella haemolysans M341] Length = 663 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 28/63 (44%), Gaps = 6/63 (9%) Query: 551 KAAYSPLDE------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 + S LD+ I +G ++L + + + + ++ + L +++ + + A I Sbjct: 494 NSKKSSLDKVIFALGILNVGKKAGKILAEKYLNLSNLMNATLDELVNLDDVGQITAESIL 553 Query: 605 NHF 607 ++ Sbjct: 554 DYL 556 >gi|317497793|ref|ZP_07956105.1| RecD/TraA family helicase [Lachnospiraceae bacterium 5_1_63FAA] gi|316894906|gb|EFV17076.1| RecD/TraA family helicase [Lachnospiraceae bacterium 5_1_63FAA] Length = 755 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603 I G+GP + + + F T ++I PE LA ++GIS+K A I Sbjct: 88 IKGVGPALAKRITKKFKMDTFRVIEE-EPERLAEVKGISEKKARAI 132 >gi|317123791|ref|YP_004097903.1| hypothetical protein Intca_0631 [Intrasporangium calvum DSM 43043] gi|315587879|gb|ADU47176.1| protein of unknown function DUF147 [Intrasporangium calvum DSM 43043] Length = 359 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 6/39 (15%), Positives = 17/39 (43%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L+ F +++ + + E L ++G+ + A + Sbjct: 308 ERLVNHFESLQRLLAAGIEDLMLVDGVGEGRARAVREGL 346 >gi|229918406|ref|YP_002887052.1| Holliday junction DNA helicase RuvA [Exiguobacterium sp. AT1b] gi|259495643|sp|C4L522|RUVA_EXISA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229469835|gb|ACQ71607.1| Holliday junction DNA helicase RuvA [Exiguobacterium sp. AT1b] Length = 195 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 5/63 (7%) Query: 544 THRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS--SPET--LASIEGISKKI 599 R RR++ ++ L ++GIGP ++ S G + + + + L G+ KK Sbjct: 60 GFRSRRERELFNKLLSVSGIGPKGALAIVAS-GDIDALIDAIETENEKYLTKFPGVGKKT 118 Query: 600 ACK 602 A + Sbjct: 119 AKQ 121 >gi|160893718|ref|ZP_02074502.1| hypothetical protein CLOL250_01272 [Clostridium sp. L2-50] gi|156864703|gb|EDO58134.1| hypothetical protein CLOL250_01272 [Clostridium sp. L2-50] Length = 749 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 3/52 (5%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I G+G + +++ F ++++I PE LA ++GIS++ A I +++ Sbjct: 87 IKGVGEALAKRIVKKFKMDSLRIIEE-EPERLAEVKGISERKARDIAVSYNE 137 >gi|157117886|ref|XP_001653084.1| excision repair cross-complementing 1 ercc1 [Aedes aegypti] gi|108875925|gb|EAT40150.1| excision repair cross-complementing 1 ercc1 [Aedes aegypti] Length = 249 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 29/58 (50%) Query: 553 AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 S L I + L+Q++GT+ + SS E L+ G+ + A K++ F++N Sbjct: 188 LVSALTNIKPVNKTDAMTLIQNYGTLANMINSSEEKLSLCSGLGPRKAKKLHKTFNEN 245 >gi|84514871|ref|ZP_01002234.1| DNA repair protein RadC [Loktanella vestfoldensis SKA53] gi|84511030|gb|EAQ07484.1| DNA repair protein RadC [Loktanella vestfoldensis SKA53] Length = 220 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 7/36 (19%), Positives = 15/36 (41%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 R L+ FG + +S + + G +A ++ Sbjct: 44 RALIDHFGDFNRVLSASVTQIGQVPGAGPAVALELK 79 >gi|291520056|emb|CBK75277.1| Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [Butyrivibrio fibrisolvens 16/4] Length = 256 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 L I+G+G +R LL FG + I + L G+ K I N Sbjct: 10 LTNISGVGIKTQRNLLNWFGNPRNIYEADIAVLLE-TGVGKNRCESIVNA 58 >gi|258611456|ref|ZP_05232459.2| comE operon protein 1 [Listeria monocytogenes FSL N3-165] gi|258600152|gb|EEW13477.1| comE operon protein 1 [Listeria monocytogenes FSL N3-165] Length = 203 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 25/51 (49%), Gaps = 2/51 (3%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L ++ GIG + +++ + + + + E L ++ GI +K K+ + Sbjct: 152 LQQVPGIGESKATAIIEY-REKEGLFQ-TIEDLKNVSGIGEKTVEKLKEYL 200 >gi|157414332|ref|YP_001481588.1| competence protein ComEA [Campylobacter jejuni subsp. jejuni 81116] gi|77386119|gb|ABA77536.1| putative non-specific DNA binding protein [Campylobacter jejuni] gi|157385296|gb|ABV51611.1| putative non-specific DNA binding protein [Campylobacter jejuni subsp. jejuni 81116] gi|315931296|gb|EFV10265.1| comE1 [Campylobacter jejuni subsp. jejuni 327] Length = 79 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 9/57 (15%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS---SPETLASIEGISKKIACKIYN 605 A L +NGIG + + +L+ + S + L ++GI K+ KI N Sbjct: 24 ATLKELKSLNGIGEAKAKSILEY------RKEANFTSIDDLKKVKGIGDKLFEKIKN 74 >gi|257899232|ref|ZP_05678885.1| DNA repair protein RadC [Enterococcus faecium Com15] gi|257837144|gb|EEV62218.1| DNA repair protein RadC [Enterococcus faecium Com15] Length = 230 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 19/36 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 LL++FG + + +++ L I GI + A +I Sbjct: 52 NLLKTFGGLASLRQATLHELEEIRGIGRVKAIEIKA 87 >gi|224500497|ref|ZP_03668846.1| hypothetical protein LmonF1_12841 [Listeria monocytogenes Finland 1988] gi|224501576|ref|ZP_03669883.1| hypothetical protein LmonFR_03497 [Listeria monocytogenes FSL R2-561] gi|254829757|ref|ZP_05234412.1| hypothetical protein Lmon1_00310 [Listeria monocytogenes 10403S] gi|254898350|ref|ZP_05258274.1| hypothetical protein LmonJ_01005 [Listeria monocytogenes J0161] gi|284801871|ref|YP_003413736.1| hypothetical protein LM5578_1626 [Listeria monocytogenes 08-5578] gi|284995013|ref|YP_003416781.1| hypothetical protein LM5923_1578 [Listeria monocytogenes 08-5923] gi|284057433|gb|ADB68374.1| hypothetical protein LM5578_1626 [Listeria monocytogenes 08-5578] gi|284060480|gb|ADB71419.1| hypothetical protein LM5923_1578 [Listeria monocytogenes 08-5923] Length = 200 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 25/51 (49%), Gaps = 2/51 (3%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L ++ GIG + +++ + + + + E L ++ GI +K K+ + Sbjct: 149 LQQVPGIGESKATAIIEY-REKEGLFQ-TIEDLKNVSGIGEKTVEKLKEYL 197 >gi|167768241|ref|ZP_02440294.1| hypothetical protein CLOSS21_02797 [Clostridium sp. SS2/1] gi|167709765|gb|EDS20344.1| hypothetical protein CLOSS21_02797 [Clostridium sp. SS2/1] Length = 776 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603 I G+GP + + + F T ++I PE LA ++GIS+K A I Sbjct: 109 IKGVGPALAKRITKKFKMDTFRVIEE-EPERLAEVKGISEKKARAI 153 >gi|291560255|emb|CBL39055.1| helicase, putative, RecD/TraA family [butyrate-producing bacterium SSC/2] Length = 776 Score = 42.8 bits (99), Expect = 0.15, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603 I G+GP + + + F T ++I PE LA ++GIS+K A I Sbjct: 109 IKGVGPALAKRITKKFKMDTFRVIEE-EPERLAEVKGISEKKARAI 153 >gi|37520198|ref|NP_923575.1| exodeoxyribonuclease V alpha chain [Gloeobacter violaceus PCC 7421] gi|35211191|dbj|BAC88570.1| exodeoxyribonuclease V alpha chain [Gloeobacter violaceus PCC 7421] Length = 745 Score = 42.8 bits (99), Expect = 0.15, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 17/85 (20%) Query: 537 AHRFAITTHRKRR-------KKAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPE 587 AHR H + R +K S L I G+GP+ R ++ FG +++ I S Sbjct: 84 AHR-----HEETRPATIGGLEKYLGSGL--IKGVGPVTARRIVAHFGLASLE-IIESDCS 135 Query: 588 TLASIEGISKKIACKIYNHFHKNTS 612 LA + G+ I + + + Sbjct: 136 RLAEVPGVGAHRIRLIQAAWQEQKA 160 >gi|16803524|ref|NP_465009.1| hypothetical protein lmo1484 [Listeria monocytogenes EGD-e] gi|16410913|emb|CAC99562.1| comEA [Listeria monocytogenes EGD-e] Length = 200 Score = 42.8 bits (99), Expect = 0.15, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 25/51 (49%), Gaps = 2/51 (3%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L ++ GIG + +++ + + + + E L ++ GI +K K+ + Sbjct: 149 LQQVPGIGESKATAIIEY-REKEGLFQ-TIEDLKNVSGIGEKTVEKLKEYL 197 >gi|291571641|dbj|BAI93913.1| DNA processing protein [Arthrospira platensis NIES-39] Length = 377 Score = 42.8 bits (99), Expect = 0.15, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 28/45 (62%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 +I+GIGP+ + L + FG++ ++SP L S+EG ++ K+ Sbjct: 13 QIHGIGPITLQRLQERFGSLATAWQASPIELGSVEGFGRQSLEKV 57 >gi|288554984|ref|YP_003426919.1| NAD-dependent DNA ligase LigA [Bacillus pseudofirmus OF4] gi|288546144|gb|ADC50027.1| NAD-dependent DNA ligase LigA [Bacillus pseudofirmus OF4] Length = 668 Score = 42.8 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 20/49 (40%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 +G + L F ++ I + L ++ I +K+A I F + Sbjct: 515 VGSKAAKTLAMEFESIDAIIEADEAALVAVNEIGEKMAASIVRFFETDE 563 >gi|188997399|ref|YP_001931650.1| 5'-3' exonuclease [Sulfurihydrogenibium sp. YO3AOP1] gi|188932466|gb|ACD67096.1| 5'-3' exonuclease [Sulfurihydrogenibium sp. YO3AOP1] Length = 299 Score = 42.8 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 11/56 (19%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I GIGP LLQ FG+++ I L +++ K+ K+ F + Sbjct: 188 GIKGIGPKTAAALLQEFGSLENI-------LENVD----KLKGKLKESFKELDKEQ 232 >gi|149051315|gb|EDM03488.1| rCG61693 [Rattus norvegicus] Length = 487 Score = 42.8 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 26/50 (52%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I G+ + + F +VK + SSPE +++ ++ + A +IY + H Sbjct: 413 SIPGVSYVTALNMCHQFSSVKKMVNSSPEEISTCAQVTHQKAEEIYKYIH 462 >gi|217967490|ref|YP_002352996.1| competence protein ComEA helix-hairpin-helix repeat protein [Dictyoglomus turgidum DSM 6724] gi|217336589|gb|ACK42382.1| competence protein ComEA helix-hairpin-helix repeat protein [Dictyoglomus turgidum DSM 6724] Length = 187 Score = 42.8 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 14/60 (23%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A+ L+ + GIGP + +++ FG+ E L +++GI +K +I + Sbjct: 132 ASKEELESLPGIGPTLAQRIIEYREENGPFGSA--------EDLLNVKGIGEKKLERIRD 183 Score = 41.2 bits (95), Expect = 0.53, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 15/27 (55%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S E L S+ GI +A +I + Sbjct: 128 NINTASKEELESLPGIGPTLAQRIIEY 154 >gi|166216289|sp|A4VKN0|DNLJ_PSEU5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 788 Score = 42.8 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 29/56 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G +LL ++ G++ I R+ P+ L + + ++A +I++ F + T Sbjct: 538 GIPDVGEETAKLLARALGSLDRIGRALPDVLVYLPDVGLEVAHEIHSFFEDEHNRT 593 Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Query: 557 LD--EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 LD I I + L + FG+++ I + L +E +++K A + ++F K + Sbjct: 625 LDRLNIPHIARTGAQRLAERFGSLEAIIAADWLDLRQVERLTEKAARSLRDYFDKPEN 682 >gi|146282220|ref|YP_001172373.1| NAD-dependent DNA ligase LigA [Pseudomonas stutzeri A1501] gi|145570425|gb|ABP79531.1| DNA ligase, NAD-dependent [Pseudomonas stutzeri A1501] Length = 802 Score = 42.8 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 29/56 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G +LL ++ G++ I R+ P+ L + + ++A +I++ F + T Sbjct: 552 GIPDVGEETAKLLARALGSLDRIGRALPDVLVYLPDVGLEVAHEIHSFFEDEHNRT 607 Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Query: 557 LD--EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 LD I I + L + FG+++ I + L +E +++K A + ++F K + Sbjct: 639 LDRLNIPHIARTGAQRLAERFGSLEAIIAADWLDLRQVERLTEKAARSLRDYFDKPEN 696 >gi|122971128|sp|Q14L37|DNLJ_SPICI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|110005471|emb|CAK99793.1| dna ligase protein [Spiroplasma citri] Length = 667 Score = 42.8 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 24/49 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G +LL + F T+ ++ + E L+ I I +A + ++F Sbjct: 513 GIRHVGQKTAKLLARQFKTIDNLAAMNIEQLSIINDIGPIVAASVVDYF 561 >gi|262283172|ref|ZP_06060939.1| competence protein CelA [Streptococcus sp. 2_1_36FAA] gi|262261424|gb|EEY80123.1| competence protein CelA [Streptococcus sp. 2_1_36FAA] Length = 222 Score = 42.8 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 12/52 (23%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYNH 606 I+GIG R + ++ + S + L ++ GI K K+ + Sbjct: 174 ISGIGQKRAQDIIAY-------REANGRFKSVDDLKNVSGIGAKTLEKLKEY 218 >gi|258544861|ref|ZP_05705095.1| DNA ligase, NAD-dependent [Cardiobacterium hominis ATCC 15826] gi|258519884|gb|EEV88743.1| DNA ligase, NAD-dependent [Cardiobacterium hominis ATCC 15826] Length = 668 Score = 42.8 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 23/45 (51%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + LL + + + + +S + L +I+GI +A I + F Sbjct: 518 VGNVSAELLARHYRELPALLAASEDDLQAIDGIGPVMAQYIRHFF 562 >gi|229817619|ref|ZP_04447901.1| hypothetical protein BIFANG_02887 [Bifidobacterium angulatum DSM 20098] gi|229785408|gb|EEP21522.1| hypothetical protein BIFANG_02887 [Bifidobacterium angulatum DSM 20098] Length = 217 Score = 42.8 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMI-SRSSPETLASIEGISKKIACK 602 A LD I+GIGP+ R +L + I SS + L + GI K K Sbjct: 162 ATLEELDSISGIGPVTARKILDY---RQRIGMFSSVDQLLEVSGIGVKTLEK 210 Score = 38.9 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 17/31 (54%) Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNH 606 G + ++ ++ E L SI GI A KI ++ Sbjct: 154 GGLVNLNTATLEELDSISGIGPVTARKILDY 184 >gi|157149750|ref|YP_001450880.1| competence protein CelA [Streptococcus gordonii str. Challis substr. CH1] gi|157074544|gb|ABV09227.1| competence protein CelA [Streptococcus gordonii str. Challis substr. CH1] Length = 221 Score = 42.8 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 12/52 (23%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYNH 606 I+GIG R + ++ + S + L ++ GI K K+ + Sbjct: 173 ISGIGQKRAQDIIAY-------REANGRFKSVDDLKNVSGIGAKTLEKLKEY 217 >gi|30020835|ref|NP_832466.1| UvrC-like protein [Bacillus cereus ATCC 14579] gi|29896387|gb|AAP09667.1| UvrC-like protein [Bacillus cereus ATCC 14579] Length = 111 Score = 42.8 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 G++ +I +L+VGKA +++RIK + N + ++ I + Sbjct: 47 GIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSPIKNHR--DEVYRIDACIVE 98 >gi|330718512|ref|ZP_08313112.1| Holliday junction DNA helicase RuvA [Leuconostoc fallax KCTC 3537] Length = 196 Score = 42.8 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 9/59 (15%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET------LASIEGISKKIACKI 603 K ++ L +++GIGP +L + I +S L G+ KK A +I Sbjct: 66 KKLFNKLLDVSGIGPKSALAILA---SDSAIGLASAVENDDVSYLTQFPGVGKKTAQQI 121 >gi|322829896|gb|EFZ33131.1| DNA repair protein, putative [Trypanosoma cruzi] Length = 269 Score = 42.8 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 19/36 (52%) Query: 573 QSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 +G+V + +S E LAS+ G K A +++ H Sbjct: 176 HRYGSVAELLTASLEDLASLPGFGPKRAGRLHTVLH 211 >gi|71666978|ref|XP_820443.1| DNA repair protein [Trypanosoma cruzi strain CL Brener] gi|70885787|gb|EAN98592.1| DNA repair protein, putative [Trypanosoma cruzi] Length = 269 Score = 42.8 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 19/36 (52%) Query: 573 QSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 +G+V + +S E LAS+ G K A +++ H Sbjct: 176 HRYGSVAELLTASLEDLASLPGFGPKRAGRLHTVLH 211 >gi|320352593|ref|YP_004193932.1| helicase, RecD/TraA family [Desulfobulbus propionicus DSM 2032] gi|320121095|gb|ADW16641.1| helicase, RecD/TraA family [Desulfobulbus propionicus DSM 2032] Length = 832 Score = 42.8 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 9/63 (14%) Query: 549 RKKAAYSPLDE------INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIA 600 RK A + L++ I G+GP + ++ FG T+ + E L + GI++K Sbjct: 86 RKPATSAALEKYLGSGLIKGVGPKTAKRIVAHFGEQTL-AVFEGEKERLLEVPGIARKKL 144 Query: 601 CKI 603 I Sbjct: 145 EMI 147 >gi|315285698|gb|EFU45138.1| conserved hypothetical protein [Escherichia coli MS 110-3] gi|323956107|gb|EGB51859.1| hypothetical protein ERLG_02615 [Escherichia coli H263] Length = 646 Score = 42.8 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 42/137 (30%) Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556 IAK + ++ E RD + L+D A R++ Sbjct: 471 IAKRARLEKMKDEILGLPEEE----KRD-----LAALQDTA-----------RERQKQKF 510 Query: 557 LD-------EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH- 606 L+ I G+GP RK L +SFG T ++R S ++G + + + Sbjct: 511 LEGFFIDVASIPGVGPARKAAL-RSFGIETAADVTRRSV---KQVKGFGDHLTQAVIDWK 566 Query: 607 --------FHKNTSHTP 615 F N + TP Sbjct: 567 ASCERRFVFRPNEAVTP 583 >gi|307626383|gb|ADN70687.1| hypothetical protein UM146_06430 [Escherichia coli UM146] Length = 646 Score = 42.8 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 42/137 (30%) Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556 IAK + ++ E RD + L+D A R++ Sbjct: 471 IAKRARLEKMKDEILGLPEEE----KRD-----LAALQDTA-----------RERQKQKF 510 Query: 557 LD-------EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH- 606 L+ I G+GP RK L +SFG T ++R S ++G + + + Sbjct: 511 LEGFFIDVASIPGVGPARKAAL-RSFGIETAADVTRRSV---KQVKGFGDHLTQAVIDWK 566 Query: 607 --------FHKNTSHTP 615 F N + TP Sbjct: 567 ASCERRFVFRPNEAVTP 583 >gi|294492165|gb|ADE90921.1| conserved hypothetical protein [Escherichia coli IHE3034] Length = 646 Score = 42.8 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 42/137 (30%) Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556 IAK + ++ E RD + L+D A R++ Sbjct: 471 IAKRARLEKMKDEILGLPEEE----KRD-----LAALQDTA-----------RERQKQKF 510 Query: 557 LD-------EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH- 606 L+ I G+GP RK L +SFG T ++R S ++G + + + Sbjct: 511 LEGFFIDVASIPGVGPARKAAL-RSFGIETAADVTRRSV---KQVKGFGDHLTQAVIDWK 566 Query: 607 --------FHKNTSHTP 615 F N + TP Sbjct: 567 ASCERRFVFRPNEAVTP 583 >gi|237704528|ref|ZP_04535009.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|226900894|gb|EEH87153.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] Length = 649 Score = 42.8 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 42/137 (30%) Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556 IAK + ++ E RD + L+D A R++ Sbjct: 474 IAKRARLEKMKDEILGLPEEE----KRD-----LAALQDTA-----------RERQKQKF 513 Query: 557 LD-------EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH- 606 L+ I G+GP RK L +SFG T ++R S ++G + + + Sbjct: 514 LEGFFIDVASIPGVGPARKAAL-RSFGIETAADVTRRSV---KQVKGFGDHLTQAVIDWK 569 Query: 607 --------FHKNTSHTP 615 F N + TP Sbjct: 570 ASCERRFVFRPNEAVTP 586 >gi|117624267|ref|YP_853180.1| hypothetical protein APECO1_1161 [Escherichia coli APEC O1] gi|218558951|ref|YP_002391864.1| hypothetical protein ECS88_2170 [Escherichia coli S88] gi|115513391|gb|ABJ01466.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|218365720|emb|CAR03456.1| conserved hypothetical protein [Escherichia coli S88] Length = 649 Score = 42.8 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 42/137 (30%) Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556 IAK + ++ E RD + L+D A R++ Sbjct: 474 IAKRARLEKMKDEILGLPEEE----KRD-----LAALQDTA-----------RERQKQKF 513 Query: 557 LD-------EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH- 606 L+ I G+GP RK L +SFG T ++R S ++G + + + Sbjct: 514 LEGFFIDVASIPGVGPARKAAL-RSFGIETAADVTRRSV---KQVKGFGDHLTQAVIDWK 569 Query: 607 --------FHKNTSHTP 615 F N + TP Sbjct: 570 ASCERRFVFRPNEAVTP 586 >gi|91211359|ref|YP_541345.1| hypothetical protein UTI89_C2346 [Escherichia coli UTI89] gi|91072933|gb|ABE07814.1| hypothetical protein YegI [Escherichia coli UTI89] Length = 649 Score = 42.8 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 42/137 (30%) Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556 IAK + ++ E RD + L+D A R++ Sbjct: 474 IAKRARLEKMKDEILGLPEEE----KRD-----LAALQDTA-----------RERQKQKF 513 Query: 557 LD-------EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH- 606 L+ I G+GP RK L +SFG T ++R S ++G + + + Sbjct: 514 LEGFFIDVASIPGVGPARKAAL-RSFGIETAADVTRRSV---KQVKGFGDHLTQAVIDWK 569 Query: 607 --------FHKNTSHTP 615 F N + TP Sbjct: 570 ASCERRFVFRPNEAVTP 586 >gi|289616540|emb|CBI56705.1| putative MEI9 protein [Sordaria macrospora] Length = 940 Score = 42.8 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 35/227 (15%), Positives = 73/227 (32%), Gaps = 33/227 (14%) Query: 389 HIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD--CAMMRMVLERRFSQ---LI 443 H V CM+ VG+ N + + + + D + + + LI Sbjct: 735 HARSMVIVPCMLTVGDYILSPNICVERKSVSDLISSFKDGRLYAQCETMFQHYRNPMLLI 794 Query: 444 KNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR 503 + ++N +F + ++P + I+ +A K E I ++ G Sbjct: 795 EFDQNKSFTLEPFADLSGTFPKLRIIWSSSPYETAEIFERLKTLEEEPDPIAAVRAGLGE 854 Query: 504 SAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGI 563 E + ++ EA L ++ G+ Sbjct: 855 GESPEDGVNEGKGSV----NGGAFNM------EA----------------QEMLGKVPGV 888 Query: 564 GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 P R ++ +V+ ++ E L + G ++ A KI + F K+ Sbjct: 889 TPKNIRNIMAEAESVREVANMGVEELGRLVG--REAAGKIVDFFKKD 933 >gi|242091551|ref|XP_002441608.1| hypothetical protein SORBIDRAFT_09g030240 [Sorghum bicolor] gi|241946893|gb|EES20038.1| hypothetical protein SORBIDRAFT_09g030240 [Sorghum bicolor] Length = 238 Score = 42.8 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 25/53 (47%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 L I GI L Q+ G+++ I+++S E + +S + A +I F Sbjct: 175 VLTSIPGIDSHDANALAQAIGSIEAIAKASKEFILENTDLSTEKAERIVRFFR 227 >gi|284035476|ref|YP_003385406.1| DNA polymerase I [Spirosoma linguale DSM 74] gi|283814769|gb|ADB36607.1| DNA polymerase I [Spirosoma linguale DSM 74] Length = 1024 Score = 42.8 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 7/48 (14%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 I GIG + L+ FG+V+ + + + L K+ + N Sbjct: 198 GIPGIGEKTAQKLIADFGSVENLI-ARADELKG------KLKENVVNF 238 >gi|223044372|ref|ZP_03614406.1| comEA protein [Staphylococcus capitis SK14] gi|222442241|gb|EEE48352.1| comEA protein [Staphylococcus capitis SK14] Length = 226 Score = 42.8 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 8/60 (13%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607 A + L I G+GP + R ++ G K I E L I+G +K K+ H Sbjct: 170 NATETDLKSIPGVGPSKAREIINYREQNGGFKNI-----EDLKKIKGFGEKTFEKLKEHL 224 >gi|117928295|ref|YP_872846.1| DNA polymerase I [Acidothermus cellulolyticus 11B] gi|117648758|gb|ABK52860.1| DNA polymerase I [Acidothermus cellulolyticus 11B] Length = 910 Score = 42.8 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 4/38 (10%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 L I GIG L++ FG+++ + + + G Sbjct: 211 LPGIPGIGEKTAAKLIRDFGSLQEL----VARIDEVPG 244 >gi|297616876|ref|YP_003702035.1| DNA repair protein RadC [Syntrophothermus lipocalidus DSM 12680] gi|297144713|gb|ADI01470.1| DNA repair protein RadC [Syntrophothermus lipocalidus DSM 12680] Length = 229 Score = 42.8 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 8/53 (15%) Query: 563 IGPLRKRL--------LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 IG + LL ++ ++ + +S E L+++ GI A ++ Sbjct: 40 IGSGTREKTAVQLAEYLLATYRGLRSLRDASCEELSAVRGIGAAKATRLKAAL 92 >gi|296417785|ref|XP_002838532.1| hypothetical protein [Tuber melanosporum Mel28] gi|295634473|emb|CAZ82723.1| unnamed protein product [Tuber melanosporum] Length = 354 Score = 42.8 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 33/98 (33%), Gaps = 30/98 (30%) Query: 11 GVYQM--LDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITH------------------ 50 GVY LD +YVG + NL RI SY + + Sbjct: 107 GVYVWGTLDSKN--MYVGHSINLYNRICSYFMPSILKTKERRVLRYLNKYGFTNLKLTIY 164 Query: 51 MISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILL 88 ++ ++ V E LE + I L P N+ L Sbjct: 165 IMEDSASLEQIV---E-----LEQHFIDSLNPNLNVDL 194 >gi|154508559|ref|ZP_02044201.1| hypothetical protein ACTODO_01060 [Actinomyces odontolyticus ATCC 17982] gi|293191352|ref|ZP_06609177.1| putative DNA-binding protein [Actinomyces odontolyticus F0309] gi|153798193|gb|EDN80613.1| hypothetical protein ACTODO_01060 [Actinomyces odontolyticus ATCC 17982] gi|292820576|gb|EFF79549.1| putative DNA-binding protein [Actinomyces odontolyticus F0309] Length = 356 Score = 42.8 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 1/40 (2%) Query: 574 SFGTVKMISRSSPETLASIEGISKKIACKIYNHF-HKNTS 612 F ++ + ++ E L +EGI A I + H+ + Sbjct: 309 HFNSLPQLRAATVEDLEELEGIGPYRAKLITENLAHQAQA 348 >gi|119472555|ref|ZP_01614603.1| NAD-dependent DNA ligase [Alteromonadales bacterium TW-7] gi|119444879|gb|EAW26179.1| NAD-dependent DNA ligase [Alteromonadales bacterium TW-7] Length = 672 Score = 42.8 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 3/52 (5%) Query: 562 GI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 GI G + L F T++ I +S E+L + + +A + F + Sbjct: 516 GIREAGEATAQNLANHFLTLENIISASVESLTQVSDVGDIVASHVRGFFDEE 567 >gi|28493351|ref|NP_787512.1| comE operon protein 1-like protein [Tropheryma whipplei str. Twist] gi|28572539|ref|NP_789319.1| DNA uptake protein [Tropheryma whipplei TW08/27] gi|28410671|emb|CAD67057.1| putative DNA uptake protein [Tropheryma whipplei TW08/27] gi|28476392|gb|AAO44481.1| comE operon protein 1-like protein [Tropheryma whipplei str. Twist] Length = 193 Score = 42.8 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 10/54 (18%) Query: 556 PLDEINGIGPLRKRLLL----QSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 L I GIG + ++ + G K + E L I GI K+ I + Sbjct: 142 RLQSIKGIGKATAKRIIDWRNKH-GPFKRL-----EDLKKISGIGNKLIKSIKD 189 >gi|322373473|ref|ZP_08048009.1| competence protein CelA [Streptococcus sp. C150] gi|321278515|gb|EFX55584.1| competence protein CelA [Streptococcus sp. C150] Length = 231 Score = 42.8 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 8/57 (14%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A L I+GIG R ++ G + S + L ++ GI K KI Sbjct: 175 ATSEELQTISGIGAKRAEDIIAYRESHGGFQ-----SVDDLKNVSGIGDKTLEKIRE 226 >gi|320161003|ref|YP_004174227.1| putative DNA processing protein [Anaerolinea thermophila UNI-1] gi|319994856|dbj|BAJ63627.1| putative DNA processing protein [Anaerolinea thermophila UNI-1] Length = 370 Score = 42.8 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 + G+G +R R LL FG++++ + E L G+S K + H + + Sbjct: 13 VRGVGAVRFRTLLNHFGSLEIAWNAPQEALKEA-GLSPKSIQHL-QHLREEPN 63 >gi|319654841|ref|ZP_08008916.1| DNA-binding protein [Bacillus sp. 2_A_57_CT2] gi|317393404|gb|EFV74167.1| DNA-binding protein [Bacillus sp. 2_A_57_CT2] Length = 357 Score = 42.8 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 L+++ + P+ L+ F I ++ E L +EGI + A KI Sbjct: 294 LNKVPRLPPIIIDNLINRFEEFPNIITATVEELDEVEGIGEVRARKIKEGLK 345 >gi|160942648|ref|ZP_02089892.1| hypothetical protein FAEPRAM212_00121 [Faecalibacterium prausnitzii M21/2] gi|158446063|gb|EDP23066.1| hypothetical protein FAEPRAM212_00121 [Faecalibacterium prausnitzii M21/2] Length = 218 Score = 42.8 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 44/107 (41%), Gaps = 18/107 (16%) Query: 1 MSSEQMPECPGVYQMLDIA---GRVL------YVGKAYNLQKRIKSYMHSNN--HTHRIT 49 + + +P+ GVY + +++ Y+G++ N+ RI + + + Sbjct: 93 LDKDDLPKKSGVYLVYAGKPVSDKIVSLRKLFYIGESSNIHDRIVEHNRDKDWKDGLKEG 152 Query: 50 HMISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPY 96 ++ + + E LL EA +I KP +N D ++P+ Sbjct: 153 ELLYYAYAL-----APKDERLLEEAALIYYYKPPYNTEYVD--NYPF 192 >gi|255027258|ref|ZP_05299244.1| hypothetical protein LmonocytFSL_14638 [Listeria monocytogenes FSL J2-003] Length = 200 Score = 42.8 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 25/51 (49%), Gaps = 2/51 (3%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L ++ GIG + +++ + + + + E L ++ GI +K K+ + Sbjct: 149 LQQVPGIGESKATAIIEY-REKEGLFQ-TIEDLKNVSGIGEKTVEKLKEYL 197 >gi|206900564|ref|YP_002251187.1| DNA-binding protein [Dictyoglomus thermophilum H-6-12] gi|206739667|gb|ACI18725.1| DNA-binding protein [Dictyoglomus thermophilum H-6-12] Length = 351 Score = 42.8 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 19/40 (47%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 ++ FG + I SS E L +IEG+ + A KI Sbjct: 303 IEKIVNYFGDLSKIMESSFEDLDNIEGVGEVRAKKIREAL 342 >gi|298713770|emb|CBJ27142.1| conserved unknown protein [Ectocarpus siliculosus] Length = 162 Score = 42.8 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 19/35 (54%) Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 FG++K + ++ L+ G+ +K +I+ H+ Sbjct: 110 FGSLKAVCDATAGELSLCPGLGEKKVARIHEALHE 144 >gi|317153517|ref|YP_004121565.1| DNA ligase, NAD-dependent [Desulfovibrio aespoeensis Aspo-2] gi|316943768|gb|ADU62819.1| DNA ligase, NAD-dependent [Desulfovibrio aespoeensis Aspo-2] Length = 678 Score = 42.8 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 7/56 (12%), Positives = 24/56 (42%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G R L + + ++++ + L +++ + +A ++ F + + Sbjct: 518 GIRHVGEQTARTLAARYRDLDALAQADRDELLALDDVGPVVAESVHFFFRSEETRS 573 >gi|186686230|ref|YP_001869426.1| DNA polymerase I [Nostoc punctiforme PCC 73102] gi|186468682|gb|ACC84483.1| DNA polymerase I [Nostoc punctiforme PCC 73102] Length = 978 Score = 42.8 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 4/36 (11%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590 D I G IG LL ++G++ I + + + Sbjct: 210 DNIPGVKGIGEKTAVQLLNTYGSLDNIYAA-LDEIK 244 >gi|209524259|ref|ZP_03272809.1| DNA protecting protein DprA [Arthrospira maxima CS-328] gi|209495350|gb|EDZ95655.1| DNA protecting protein DprA [Arthrospira maxima CS-328] Length = 376 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 28/45 (62%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 +I+GIGP+ + L + FG++ ++SP L S+EG ++ K+ Sbjct: 13 KIHGIGPITLQRLQERFGSLATAWQASPMELGSVEGFGRQSLEKV 57 >gi|332523820|ref|ZP_08400072.1| ComE operon protein 1 [Streptococcus porcinus str. Jelinkova 176] gi|332315084|gb|EGJ28069.1| ComE operon protein 1 [Streptococcus porcinus str. Jelinkova 176] Length = 228 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 L +I GIG R + ++ + + E L I GI KK K+ + Sbjct: 177 LTKIPGIGEKRAKEIIDVRESQGGFKK--LEDLLKISGIGKKTLEKLKD 223 >gi|330990424|ref|ZP_08314384.1| hypothetical protein SXCC_00337 [Gluconacetobacter sp. SXCC-1] gi|329762507|gb|EGG78991.1| hypothetical protein SXCC_00337 [Gluconacetobacter sp. SXCC-1] Length = 186 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%) Query: 560 INGIGPLRKRLLLQSFGT--VKMISRSSPETLASIEGISKKIACKI 603 I GIGP+ + L+++FG +I + PE L + GI K A +I Sbjct: 100 IRGIGPVYAKKLVKAFGEAVFDLIEQ-EPERLREVTGIGPKRAERI 144 >gi|330995009|ref|ZP_08318929.1| hypothetical protein SXCC_04894 [Gluconacetobacter sp. SXCC-1] gi|329757922|gb|EGG74446.1| hypothetical protein SXCC_04894 [Gluconacetobacter sp. SXCC-1] Length = 677 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%) Query: 560 INGIGPLRKRLLLQSFGT--VKMISRSSPETLASIEGISKKIACKI 603 I GIGP+ + L+++FG +I + PE L + GI K A +I Sbjct: 49 IRGIGPVYAKKLVKAFGEAVFDLIEQ-EPERLREVTGIGPKRAERI 93 >gi|294671442|ref|ZP_06736289.1| hypothetical protein NEIELOOT_03152 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291306861|gb|EFE48104.1| hypothetical protein NEIELOOT_03152 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 109 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 8/33 (24%), Positives = 17/33 (51%) Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I+ ++ E L ++ GI A I ++ +N + Sbjct: 22 NINTATVEELKALPGIGPAKAQAIVDYRKENGN 54 Score = 39.3 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L + GIGP + + ++ F +V E L ++GI + I K+ + Sbjct: 30 ELKALPGIGPAKAQAIVDYRKENGNFKSV--------EDLKKVKGIGEGIFGKLKD 77 >gi|257438385|ref|ZP_05614140.1| putative DNA repair protein RadC [Faecalibacterium prausnitzii A2-165] gi|257199216|gb|EEU97500.1| putative DNA repair protein RadC [Faecalibacterium prausnitzii A2-165] Length = 241 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 17/34 (50%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 L+ FG + +S E L ++EG+ A ++ Sbjct: 53 LMDRFGDFAGVLDASEEDLLTVEGVGPSTARMLH 86 >gi|222151527|ref|YP_002560683.1| holliday junction DNA helicase RuvA [Macrococcus caseolyticus JCSC5402] gi|254766967|sp|B9E719|RUVA_MACCJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|222120652|dbj|BAH17987.1| holliday junction DNA helicase RuvA [Macrococcus caseolyticus JCSC5402] Length = 193 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 7/58 (12%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGT-----VKMISRSSPETLASIEGISKKIACKI 603 KA ++ L+++ GIGP +L + + +K I S L GI KK A +I Sbjct: 68 KAMFNALNKVTGIGPKSALAILAT--STPQEIIKAIESESESYLIKFPGIGKKTARQI 123 >gi|218135320|ref|ZP_03464124.1| hypothetical protein BACPEC_03225 [Bacteroides pectinophilus ATCC 43243] gi|217990705|gb|EEC56716.1| hypothetical protein BACPEC_03225 [Bacteroides pectinophilus ATCC 43243] Length = 757 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHF 607 I GIG + ++ FG T ++I PE LA I+GIS K A I + Sbjct: 108 IRGIGEKTAQNIVNYFGADTFRIIEE-EPERLAEIKGISMKKAMDIADQL 156 >gi|171463268|ref|YP_001797381.1| DNA ligase, NAD-dependent [Polynucleobacter necessarius subsp. necessarius STIR1] gi|254781389|sp|B1XTU0|DNLJ_POLNS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|171192806|gb|ACB43767.1| DNA ligase, NAD-dependent [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 671 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 7/51 (13%), Positives = 21/51 (41%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G + L + ++ + + E L +++ + +A I + + Sbjct: 521 GIRHVGETTAKDLANHYQSMHALMDAGVEDLLTVKDVGPVVADSITSFMQE 571 >gi|325957924|ref|YP_004289390.1| DNA repair and recombination protein radA [Methanobacterium sp. AL-21] gi|325329356|gb|ADZ08418.1| DNA repair and recombination protein radA [Methanobacterium sp. AL-21] Length = 311 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 L+E+ +G + L + F + ++ ++ + L+ I + +A K+ K+ Sbjct: 3 ELEELPNVGEKTAQKLRDAGFADMMRLATATAKELSVKAEIGEGVAEKVIEAARKSE 59 >gi|20094004|ref|NP_613851.1| flap endonuclease-1 [Methanopyrus kandleri AV19] gi|28380017|sp|Q8TXU4|FEN_METKA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap structure-specific endonuclease 1 gi|19886972|gb|AAM01781.1| 5'-3' exonuclease [Methanopyrus kandleri AV19] Length = 348 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 8/26 (30%), Positives = 15/26 (57%) Query: 558 DEINGIGPLRKRLLLQSFGTVKMISR 583 D + GIGP R L++ +G++ + Sbjct: 238 DGVPGIGPKRALQLIRKYGSLDELKD 263 >gi|295426520|ref|ZP_06819170.1| NAD-dependent DNA ligase LigA [Lactobacillus amylolyticus DSM 11664] gi|295063888|gb|EFG54846.1| NAD-dependent DNA ligase LigA [Lactobacillus amylolyticus DSM 11664] Length = 669 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 13/113 (11%) Query: 497 IAKGPKRSAGMEKFFVKKGEALVLN--MRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY 554 IAK + + + + + + L+ I + AI ++ + Sbjct: 460 IAKDLVHNVA-DLYHLTPDDLMQLDHFKEKSINNLLT---------AIDKSKQNSVELLL 509 Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + L I+ +G RL+ Q F + I + + +A+I+ I IA + +F Sbjct: 510 TGL-GIDHVGAKVARLISQKFKNLPKIMAADVQEVAAIDTIGPTIAESLTTYF 561 >gi|167763098|ref|ZP_02435225.1| hypothetical protein BACSTE_01465 [Bacteroides stercoris ATCC 43183] gi|167699438|gb|EDS16017.1| hypothetical protein BACSTE_01465 [Bacteroides stercoris ATCC 43183] Length = 665 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 24/45 (53%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + + +SF + + ++ E L +I+ I +KIA I +F Sbjct: 515 VGETVAKKIAKSFNDIDELENANLEKLINIDEIGEKIAQSILTYF 559 >gi|305682056|ref|ZP_07404860.1| DNA ligase (NAD+) [Corynebacterium matruchotii ATCC 14266] gi|305658529|gb|EFM48032.1| DNA ligase (NAD+) [Corynebacterium matruchotii ATCC 14266] Length = 715 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 20/45 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G R L + ++ + ++ E +A EG+ +A + F Sbjct: 538 VGNTASRALASRYRSLDALRAATVEDIAETEGVGLVMAQSFKDWF 582 >gi|302038035|ref|YP_003798357.1| hypothetical protein NIDE2726 [Candidatus Nitrospira defluvii] gi|300606099|emb|CBK42432.1| protein of unknown function, contains DNA-binding helix-hairpin-helix region [Candidatus Nitrospira defluvii] Length = 180 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 18/65 (27%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A S L + GIGP + ++ FG E L ++GI +K ++ Sbjct: 112 ATASDLQALPGIGPKLAQRVIDHRTARGPFG--------KVEDLQQVKGIGRKK----FD 159 Query: 606 HFHKN 610 + Sbjct: 160 RLRPH 164 >gi|298369197|ref|ZP_06980515.1| DNA ligase, NAD-dependent [Neisseria sp. oral taxon 014 str. F0314] gi|298283200|gb|EFI24687.1| DNA ligase, NAD-dependent [Neisseria sp. oral taxon 014 str. F0314] Length = 830 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 26/56 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FG+++ + R+ LA + I +A I + F ++ Sbjct: 588 GIRHVGERTAKTLAQAFGSLEHVRRAPEPILACLPDIGTVVARSIAHFFAQDAQQA 643 >gi|294649387|ref|ZP_06726818.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194] gi|292824757|gb|EFF83529.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194] Length = 921 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 7/49 (14%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + G+G LL +G++ I +A+++ + KI+ I ++ Sbjct: 187 GVPGVGAKTAAKLLTEYGSLDNI-------IANVDQLKGKISQNIKDNL 228 >gi|294669029|ref|ZP_06734115.1| DNA ligase, NAD-dependent [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309021|gb|EFE50264.1| DNA ligase, NAD-dependent [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 730 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 26/56 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FG+++ + R+ LA + I +A I + F ++ Sbjct: 495 GIRHVGERTAKTLAQAFGSLEHVRRAPEPILACLPDIGTVVARSIAHFFAQDAQQA 550 >gi|290559964|pdb|2WSH|A Chain A, Structure Of Bacteriophage T4 Endoii E118a Mutant gi|290559965|pdb|2WSH|B Chain B, Structure Of Bacteriophage T4 Endoii E118a Mutant gi|290559966|pdb|2WSH|C Chain C, Structure Of Bacteriophage T4 Endoii E118a Mutant gi|290559967|pdb|2WSH|D Chain D, Structure Of Bacteriophage T4 Endoii E118a Mutant Length = 143 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 22/93 (23%) Query: 19 AGRVLYVGKAYNLQKRIKSYMHSNNHTHRI-----THMISQI----NNIRFT-------- 61 ++Y+GK NL+KRI Y + N + + +I + + F Sbjct: 49 NDELVYIGKTKNLRKRINYYRTAINRKDKTSDSTKSALIHSALKEGSKVEFYARQCFNLS 108 Query: 62 ---VTCTEVEALL-LEANM-IKRLKPRFNILLR 89 T A + LEA + IK P +NI + Sbjct: 109 XTNELGTXTIATIDLEAPLFIKLFNPPWNIQHK 141 >gi|255067693|ref|ZP_05319548.1| DNA ligase, NAD-dependent [Neisseria sicca ATCC 29256] gi|255048034|gb|EET43498.1| DNA ligase, NAD-dependent [Neisseria sicca ATCC 29256] Length = 543 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 26/56 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FG+++ + R+ LA + I +A I + F ++ Sbjct: 308 GIRHVGERTAKTLAQAFGSLEHVRRAPEPILACLPDIGTVVARSIAHFFAQDAQQA 363 >gi|288575281|ref|ZP_06393611.1| DNA ligase, NAD-dependent [Neisseria mucosa ATCC 25996] gi|288568349|gb|EFC89909.1| DNA ligase, NAD-dependent [Neisseria mucosa ATCC 25996] Length = 446 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 26/56 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FG+++ + R+ LA + I +A I + F ++ Sbjct: 211 GIRHVGERTAKTLAQAFGSLEHVRRAPEPILACLPDIGTVVARSIAHFFAQDAQQA 266 >gi|225022751|ref|ZP_03711943.1| hypothetical protein CORMATOL_02796 [Corynebacterium matruchotii ATCC 33806] gi|224944472|gb|EEG25681.1| hypothetical protein CORMATOL_02796 [Corynebacterium matruchotii ATCC 33806] Length = 699 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 20/45 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G R L + ++ + ++ E +A EG+ +A + F Sbjct: 531 VGNTASRALASRYRSLDALRAATVEDIAETEGVGLVMAQSFKDWF 575 >gi|78187499|ref|YP_375542.1| DNA polymerase A [Chlorobium luteolum DSM 273] gi|78167401|gb|ABB24499.1| DNA polymerase A [Chlorobium luteolum DSM 273] Length = 945 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 4/35 (11%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETL 589 D I G IGP LL FG+++ + R E L Sbjct: 215 DNIPGAEGIGPKTATSLLARFGSLEEVYR-HIEEL 248 >gi|297616809|ref|YP_003701968.1| DNA ligase, NAD-dependent [Syntrophothermus lipocalidus DSM 12680] gi|297144646|gb|ADI01403.1| DNA ligase, NAD-dependent [Syntrophothermus lipocalidus DSM 12680] Length = 668 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 22/47 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G R+L + + ++ S E L SI I +KIA + F + Sbjct: 515 VGLKTARILAEHYRDIERFSDIDREELMSIPEIGEKIAESVTAFFAE 561 >gi|81427980|ref|YP_394979.1| Holliday junction DNA helicase RuvA [Lactobacillus sakei subsp. sakei 23K] gi|90135183|sp|Q38YR0|RUVA_LACSS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|78609621|emb|CAI54667.1| Holliday junction DNA helicase RuvA [Lactobacillus sakei subsp. sakei 23K] Length = 203 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 3/56 (5%) Query: 551 KAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKI 603 K + L ++GIGP +L G ++ I L G+ KK A +I Sbjct: 68 KQLFQKLISVSGIGPKSALAILANSDHSGLIQAIMNDDIGYLTKFPGVGKKTAQQI 123 >gi|320100660|ref|YP_004176252.1| DEAD/DEAH box helicase domain-containing protein [Desulfurococcus mucosus DSM 2162] gi|319753012|gb|ADV64770.1| DEAD/DEAH box helicase domain protein [Desulfurococcus mucosus DSM 2162] Length = 714 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 563 IGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 IG +R R+L++ F T++ ++ + ++AS+ +++A ++ + Sbjct: 661 IGRVRARILIEHGFKTLRDLAEAPVSSIASLPRFGQRVAEEVERQLRE 708 >gi|317121677|ref|YP_004101680.1| PHP domain protein [Thermaerobacter marianensis DSM 12885] gi|315591657|gb|ADU50953.1| PHP domain protein [Thermaerobacter marianensis DSM 12885] Length = 675 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 5/63 (7%) Query: 557 LDEINGIGPLRKRLLLQSFG--TVKMISRSSPET--LASIEGISKKIACKIYNHFHKNTS 612 L I G+GP L G + + + + +A++ G+ + A K+ + Sbjct: 114 LLAIPGLGPRTAARLYHELGIDSPAALRDA-LDDGRVAALPGLGEARARKLREALDRLDR 172 Query: 613 HTP 615 P Sbjct: 173 EGP 175 >gi|292670819|ref|ZP_06604245.1| RecD/TraA family helicase [Selenomonas noxia ATCC 43541] gi|292647440|gb|EFF65412.1| RecD/TraA family helicase [Selenomonas noxia ATCC 43541] Length = 722 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Query: 560 INGIGPLRKRLLLQSFGTVK-MISRSSPETLASIEGISKKIACKI 603 I+G+GP R +++ FGT I S P L I GI K A KI Sbjct: 101 IDGVGPAMARRIVEHFGTEALRIIESVPHRLREISGIGPKTAEKI 145 >gi|166215832|sp|Q5ZWX6|DNLJ_LEGPH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 673 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 14/74 (18%) Query: 548 RRKKAAYSPLDE--------------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 + K S L++ I IG R+L + + V+ + ++ E L ++ Sbjct: 494 KSAKNLLSALEKSKKTTFNRFLYALGIREIGEAGARVLAEHYCDVESLKAATIEELMTLN 553 Query: 594 GISKKIACKIYNHF 607 I A I + F Sbjct: 554 DIGPVAASHIVHFF 567 >gi|52841193|ref|YP_094992.1| DNA ligase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628304|gb|AAU27045.1| DNA ligase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 683 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 14/74 (18%) Query: 548 RRKKAAYSPLDE--------------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 + K S L++ I IG R+L + + V+ + ++ E L ++ Sbjct: 504 KSAKNLLSALEKSKKTTFNRFLYALGIREIGEAGARVLAEHYCDVESLKAATIEELMTLN 563 Query: 594 GISKKIACKIYNHF 607 I A I + F Sbjct: 564 DIGPVAASHIVHFF 577 >gi|20094872|ref|NP_614719.1| topoisomerase V [Methanopyrus kandleri AV19] gi|14325803|gb|AAK60014.1| topoisomerase V [Methanopyrus kandleri] gi|19888102|gb|AAM02649.1| Topoisomerase V [Methanopyrus kandleri AV19] Length = 984 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 22/57 (38%) Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 R K + ++ G+ + LL+ F T + + L + G+ + +I Sbjct: 849 RIKGIPETMLQVRGMSVEKAERLLERFDTWTKVKEAPVSELVRVPGVGLSLVKEIKA 905 Score = 42.4 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 22/51 (43%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 L ++ G+ P L++ G+ + + L +E + K+A +I Sbjct: 913 ALLDVKGVSPELADRLVEELGSPYRVLTAKKSDLMRVERVGPKLAERIRAA 963 Score = 42.0 bits (97), Expect = 0.27, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 8/60 (13%) Query: 563 IGPLRKRLLLQSFGTV----KMISRSSPETLASIEGIS-KKIACKI--YNHFHKNTSHTP 615 +G R R L++ FG+ K++ + L + GI + +A + Y + TP Sbjct: 704 VGEGRARRLIEYFGSAGEVGKLVENAEVSKLLEVPGIGDEAVARLVPGYKTLR-DAGLTP 762 Score = 42.0 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 12/72 (16%) Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS----SPE 587 RL +EA+R A+ + L + G+G LL++FG + + + E Sbjct: 396 RLSEEAYRAAVE--------IQLAELTKKEGVGRKTAERLLRAFGNPERVKQLAREFEIE 447 Query: 588 TLASIEGISKKI 599 LAS+EG+ +++ Sbjct: 448 KLASVEGVGERV 459 Score = 42.0 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Query: 557 LDEINGIGPLRKRLLLQSFG-TVKMISRSSPETLA-SIEGISKKIACKI 603 L I G+GP +L++ ++ ++ +PE LA +EG+ +++A ++ Sbjct: 624 LLNIEGVGPKLAERILEAVDYDLERLASLNPEELAEKVEGLGEELAERV 672 Score = 40.9 bits (94), Expect = 0.73, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 14/36 (38%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 L I GI R LL+ +G + + E L Sbjct: 469 SLISIRGIDRERAERLLKKYGGYSKVREAGVEELRE 504 >gi|226954287|ref|ZP_03824751.1| DNA polymerase I [Acinetobacter sp. ATCC 27244] gi|226834958|gb|EEH67341.1| DNA polymerase I [Acinetobacter sp. ATCC 27244] Length = 921 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 7/49 (14%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + G+G LL +G++ I +A+++ + KI+ I ++ Sbjct: 187 GVPGVGAKTAAKLLTEYGSLDNI-------IANVDQLKGKISQNIKDNL 228 >gi|170289009|ref|YP_001739247.1| DNA repair protein RadC [Thermotoga sp. RQ2] gi|170176512|gb|ACB09564.1| DNA repair protein RadC [Thermotoga sp. RQ2] Length = 215 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Query: 569 RLLLQSF-GTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + LL+ F G++ +S +S E +AS+EG+ A + Sbjct: 39 KDLLERFDGSLIKLSNASLEEIASVEGVGMVKAITLKAAL 78 >gi|53804488|ref|YP_113677.1| hypothetical protein MCA1213 [Methylococcus capsulatus str. Bath] gi|53758249|gb|AAU92540.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath] Length = 574 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 5/66 (7%) Query: 547 KRRKKA--AYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPE-TLASIEGISKKIAC 601 K KK A + L +I G+GP R + L TV+ + R+ + + S+ G +K Sbjct: 84 KLHKKLPPAITELLKIPGLGPKRVKALYHELDIHTVEQLQRAVRDHRIRSLAGFGEKTES 143 Query: 602 KIYNHF 607 +I Sbjct: 144 RIAEAL 149 >gi|313681124|ref|YP_004058863.1| soluble ligand binding domain [Oceanithermus profundus DSM 14977] gi|313153839|gb|ADR37690.1| Soluble ligand binding domain [Oceanithermus profundus DSM 14977] Length = 171 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 8/27 (29%), Positives = 16/27 (59%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 ++R+S E L ++ GI +A +I + Sbjct: 116 NVNRASAEELEAVPGIGPALARRIVAY 142 >gi|262282968|ref|ZP_06060735.1| NAD-dependent DNA ligase LigA [Streptococcus sp. 2_1_36FAA] gi|262261220|gb|EEY79919.1| NAD-dependent DNA ligase LigA [Streptococcus sp. 2_1_36FAA] Length = 652 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 29/52 (55%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +G R+LL+ F + ++++ E +ASI+ + IA ++++F + Sbjct: 502 GIRHVGSKASRILLEKFHDIPSLAQAEQEEIASIDSLGMVIAKSLHSYFAQE 553 Score = 40.1 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 559 EINGIGPLRKRLLLQS--FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I+G+GP L V I R S E L +E +K A K+YN + S++ Sbjct: 436 NISGLGPAVVEKLFAKDLVRDVAGIYRLSIEDLLQLENFKEKSANKLYNAIQASKSNS 493 >gi|241889713|ref|ZP_04777011.1| DNA ligase, NAD-dependent [Gemella haemolysans ATCC 10379] gi|241863335|gb|EER67719.1| DNA ligase, NAD-dependent [Gemella haemolysans ATCC 10379] Length = 663 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 28/63 (44%), Gaps = 6/63 (9%) Query: 551 KAAYSPLDE------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ S LD+ I +G ++L + + + ++ E L +++ + + A I Sbjct: 494 KSKESSLDKVIYALGILNVGKKAGKILAEKYVNLSNFMNATLEELINLDDVGQITAESIL 553 Query: 605 NHF 607 ++ Sbjct: 554 DYL 556 >gi|262198183|ref|YP_003269392.1| DNA polymerase domain-containing protein [Haliangium ochraceum DSM 14365] gi|262081530|gb|ACY17499.1| DNA polymerase domain-containing protein [Haliangium ochraceum DSM 14365] Length = 394 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 17/63 (26%) Query: 557 LDEINGIGP---------LR--KRLLLQSFGTVKMISRSSPE-TLASIEGISKKIACKIY 604 L++I GIGP R + LL+ SPE TLA + GI ++A +I+ Sbjct: 100 LEQIPGIGPGLSAALEEMARTGRLRLLERLEG-----ELSPEATLAQVPGIGDELAHRIH 154 Query: 605 NHF 607 Sbjct: 155 EVL 157 >gi|148360390|ref|YP_001251597.1| DNA ligase [Legionella pneumophila str. Corby] gi|166215817|sp|A5IFV1|DNLJ_LEGPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|148282163|gb|ABQ56251.1| DNA ligase [Legionella pneumophila str. Corby] Length = 673 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 14/74 (18%) Query: 548 RRKKAAYSPLDE--------------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 + K S L++ I IG R+L + + V+ + ++ E L ++ Sbjct: 494 KSAKNLLSALEKSKKTTFNRFLYALGIREIGEAGARVLAEHYCDVESLKAATIEELMTLN 553 Query: 594 GISKKIACKIYNHF 607 I A I + F Sbjct: 554 DIGPVAASHIVHFF 567 >gi|121534305|ref|ZP_01666129.1| DNA polymerase I [Thermosinus carboxydivorans Nor1] gi|121307075|gb|EAX47993.1| DNA polymerase I [Thermosinus carboxydivorans Nor1] Length = 874 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 10/53 (18%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 + GIG LL+ FG+V+ + ++ + + G K+ N Sbjct: 192 GVPGIGEKTAGKLLREFGSVENLL-ANID---KVSG------KKLQESLRANA 234 >gi|315649754|ref|ZP_07902837.1| NAD-dependent DNA ligase LigA [Paenibacillus vortex V453] gi|315274728|gb|EFU38109.1| NAD-dependent DNA ligase LigA [Paenibacillus vortex V453] Length = 670 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 5/69 (7%) Query: 541 AITTHRKRRKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 AI K +++ S L I G ++L + + + ++ E L + + Sbjct: 497 AIE---KSKERDLASFLFALGIPNTGKSTTKMLADHYRDLHRVMAATAEELVELPDVGGI 553 Query: 599 IACKIYNHF 607 +A I +F Sbjct: 554 VADSIAGYF 562 >gi|307564753|ref|ZP_07627281.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A] gi|307346475|gb|EFN91784.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A] Length = 945 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 25/108 (23%) Query: 500 GPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLD 558 P+ G E K+ E + ++ + + D A F Sbjct: 174 RPRHGGGYEILGEKEIKEKYNIPKTSQVIDLLALMGDAADNF-----------------P 216 Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 G+G L+ FG++ I L++ + I K+ KI N Sbjct: 217 GCPGVGEKTASKLINEFGSIDNI-------LSNTDKIKGKLKEKIENA 257 >gi|146296740|ref|YP_001180511.1| DNA ligase, NAD-dependent [Caldicellulosiruptor saccharolyticus DSM 8903] gi|166215569|sp|A4XK85|DNLJ_CALS8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|145410316|gb|ABP67320.1| DNA ligase, NAD-dependent [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 673 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 13/78 (16%) Query: 541 AITTHRKRRKKAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 AI +KR PLD I IG + L + ++ + + E L + Sbjct: 493 AIEASKKR-------PLDRLIFALGIRHIGQKAAKTLAEHISSIDDLFTITEEELLKLPD 545 Query: 595 ISKKIACKIYNHFHKNTS 612 +K+A + F ++ + Sbjct: 546 FGEKMAKSVVTFFRQDQT 563 >gi|308162262|gb|EFO64669.1| Hypothetical protein GLP15_1509 [Giardia lamblia P15] Length = 195 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 24/46 (52%) Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 G+ + R L + F T++ I SS + +AS+ G S++ A + Sbjct: 145 GLSKPKIRSLCEHFKTLRDICTSSVKEIASLPGFSEETAATLLRRL 190 >gi|229495891|ref|ZP_04389617.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406] gi|229317204|gb|EEN83111.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406] Length = 937 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 6/45 (13%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 D I G IGP + LL FG++ I + L+ + KK+ Sbjct: 194 DNIPGCKGIGPKKASELLTQFGSIDAIYE-HLDELS--PSLKKKL 235 >gi|34556867|ref|NP_906682.1| Holliday junction DNA helicase RuvA [Wolinella succinogenes DSM 1740] gi|44888365|sp|Q7MA70|RUVA_WOLSU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|34482582|emb|CAE09582.1| PUTATIVE HOLLIDAY JUNCTION DNA HELICASE [Wolinella succinogenes] Length = 189 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 6/83 (7%) Query: 525 PILYFIQR-LRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFG--TVKMI 581 I +R+EA +++ + +K + L +ING+GP +L ++ T I Sbjct: 42 EARLLITHLIREEA--WSLYGFAEEAEKRVFDTLIKINGVGPKAALAILSTYTPPTFAQI 99 Query: 582 SRS-SPETLASIEGISKKIACKI 603 ++ + L + GI K A +I Sbjct: 100 IQAQDVKALQRVPGIGPKSAGRI 122 >gi|321459229|gb|EFX70285.1| hypothetical protein DAPPUDRAFT_61546 [Daphnia pulex] Length = 146 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 L I + LL +F T++ I ++ E L+ G + A +++ H Sbjct: 89 ALSSIKSVNRTNAMTLLSNFQTLQKIYEATEEDLSLNPGFGPQKAKRLFRVLH 141 >gi|296106543|ref|YP_003618243.1| DNA ligase (NAD ) [Legionella pneumophila 2300/99 Alcoy] gi|295648444|gb|ADG24291.1| DNA ligase (NAD ) [Legionella pneumophila 2300/99 Alcoy] Length = 673 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 14/74 (18%) Query: 548 RRKKAAYSPLDE--------------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 + K S L++ I IG R+L + + V+ + ++ E L ++ Sbjct: 494 KSAKNLLSALEKSKKTTFNRFLYALGIREIGEAGARVLAEHYCDVESLKAATIEELMTLN 553 Query: 594 GISKKIACKIYNHF 607 I A I + F Sbjct: 554 DIGPVAASHIVHFF 567 >gi|226311584|ref|YP_002771478.1| hypothetical protein BBR47_19970 [Brevibacillus brevis NBRC 100599] gi|226094532|dbj|BAH42974.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 234 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 4/57 (7%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKM-ISRSSPETLASIEGISKKIACKIYNHF 607 A L + GIG R + ++ + + + + L IEGI +K+ +I + Sbjct: 178 ATADELMSLPGIGEARAKAIVDY-RSKQGPFRSA--DDLKQIEGIGEKMFARIKDRL 231 >gi|224436959|ref|ZP_03657940.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818] gi|313143431|ref|ZP_07805624.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818] gi|313128462|gb|EFR46079.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818] Length = 913 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 3/47 (6%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 + GIG + L+Q FG+++ + + + + S + +IA I Sbjct: 187 GVKGIGAKSAQKLIQRFGSIESLY-ARIDEVESAT--TPRIAKLIKE 230 >gi|145296663|ref|YP_001139484.1| DNA integrity scanning protein DisA [Corynebacterium glutamicum R] gi|166201837|sp|A4QH66|DISA_CORGB RecName: Full=DNA integrity scanning protein disA gi|140846583|dbj|BAF55582.1| hypothetical protein [Corynebacterium glutamicum R] Length = 366 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 19/38 (50%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L+ FG + + +S E L++++G+ A I + Sbjct: 325 KLIVEFGNLDALLNASVEDLSAVDGVGSLWARHITDGL 362 >gi|38234342|ref|NP_940109.1| hypothetical protein DIP1771 [Corynebacterium diphtheriae NCTC 13129] gi|38200605|emb|CAE50301.1| Putative membrane protein [Corynebacterium diphtheriae] Length = 209 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 14/64 (21%) Query: 546 RKRRKKAAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKI 599 R R A + L++++GIG ++ FG++ E L ++GI Sbjct: 148 RVRLNSATVAELEQLDGIGAKTAAAIVSYRDSHGGFGSL--------EELQKVKGIGPAK 199 Query: 600 ACKI 603 I Sbjct: 200 YQAI 203 >gi|19553863|ref|NP_601865.1| DNA integrity scanning protein DisA [Corynebacterium glutamicum ATCC 13032] gi|62391504|ref|YP_226906.1| DNA integrity scanning protein DisA [Corynebacterium glutamicum ATCC 13032] gi|81759851|sp|Q8NMB2|DISA_CORGL RecName: Full=DNA integrity scanning protein disA gi|21325438|dbj|BAC00060.1| Predicted nucleic-acid-binding protein (contains the HHH domain) [Corynebacterium glutamicum ATCC 13032] gi|41326846|emb|CAF20690.1| Predicted nucleic-acid-binding protein (contains the HHH domain) [Corynebacterium glutamicum ATCC 13032] Length = 366 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 19/38 (50%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L+ FG + + +S E L++++G+ A I + Sbjct: 325 KLIVEFGNLDALLNASVEDLSAVDGVGSLWARHITDGL 362 >gi|315271287|gb|ACO46469.2| putative DNA-directed DNA polymerase (DNA polymerase I) [Deinococcus deserti VCD115] Length = 923 Score = 42.8 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRS 584 D I G IGP LLQ +GT++ I + Sbjct: 187 DNIPGAKGIGPKTAAKLLQEYGTLEGIYEA 216 >gi|251770889|gb|EES51475.1| hypothetical protein UBAL3_96120018 [Leptospirillum ferrodiazotrophum] Length = 387 Score = 42.8 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query: 7 PECPGVYQML----DIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62 P C GVY++ +VLY+G + NL+KR+ +++S+ + +S R+ + Sbjct: 297 PVCSGVYEISSFVPGEPEKVLYIGSSRNLRKRLSHHLYSSGGNPLLRERMSGGARFRYRI 356 Query: 63 TC 64 Sbjct: 357 VK 358 >gi|300768015|ref|ZP_07077921.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494364|gb|EFK29526.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 220 Score = 42.8 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 7/58 (12%) Query: 551 KAAYSPLDEINGIGPLRKRLLL---QSFGTVKMI--SRSSPETLASIEGISKKIACKI 603 KA + L ++GIGP +L G ++ I ++ L S G+ KK A +I Sbjct: 84 KALFEKLLGVSGIGPKSALAILANNDHAGLIQAINQENATY--LTSFPGVGKKTAQQI 139 >gi|226356483|ref|YP_002786223.1| DNA polymerase I [Deinococcus deserti VCD115] Length = 926 Score = 42.8 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRS 584 D I G IGP LLQ +GT++ I + Sbjct: 190 DNIPGAKGIGPKTAAKLLQEYGTLEGIYEA 219 >gi|297583057|ref|YP_003698837.1| DNA ligase [Bacillus selenitireducens MLS10] gi|297141514|gb|ADH98271.1| DNA ligase, NAD-dependent [Bacillus selenitireducens MLS10] Length = 668 Score = 42.8 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 20/45 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + L F T+ + + E L +++ I K+A I F Sbjct: 516 VGSKAAKTLAMHFETMDALMEADKEALIAVDEIGDKMADSIVMAF 560 >gi|28378879|ref|NP_785771.1| holliday junction DNA helicase RuvA [Lactobacillus plantarum WCFS1] gi|254557084|ref|YP_003063501.1| holliday junction DNA helicase RuvA [Lactobacillus plantarum JDM1] gi|308181078|ref|YP_003925206.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus plantarum subsp. plantarum ST-III] gi|38258511|sp|Q88V02|RUVA_LACPL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|28271716|emb|CAD64622.1| holliday junction DNA helicase RuvA [Lactobacillus plantarum WCFS1] gi|254046011|gb|ACT62804.1| holliday junction DNA helicase RuvA [Lactobacillus plantarum JDM1] gi|308046569|gb|ADN99112.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus plantarum subsp. plantarum ST-III] Length = 203 Score = 42.8 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 7/58 (12%) Query: 551 KAAYSPLDEINGIGPLRKRLLL---QSFGTVKMI--SRSSPETLASIEGISKKIACKI 603 KA + L ++GIGP +L G ++ I ++ L S G+ KK A +I Sbjct: 67 KALFEKLLGVSGIGPKSALAILANNDHAGLIQAINQENATY--LTSFPGVGKKTAQQI 122 >gi|220931528|ref|YP_002508436.1| conserved hypothetical protein TIGR00375 [Halothermothrix orenii H 168] gi|219992838|gb|ACL69441.1| conserved hypothetical protein TIGR00375 [Halothermothrix orenii H 168] Length = 392 Score = 42.8 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%) Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKI 603 PL ++ G+G LL+SFGT +++I +S L+ + G +IA I Sbjct: 323 PLADVPGVGKKTLNKLLKSFGTEMEIIHQSGVNELSELVG--TRIAGNI 369 >gi|269123417|ref|YP_003305994.1| Holliday junction DNA helicase RuvA [Streptobacillus moniliformis DSM 12112] gi|268314743|gb|ACZ01117.1| Holliday junction DNA helicase RuvA [Streptobacillus moniliformis DSM 12112] Length = 200 Score = 42.8 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 5/48 (10%) Query: 560 INGIGPLRKRLLLQSFGTVKMISR-SS---PETLASIEGISKKIACKI 603 INGIG + +L +F + ++ +S + LA + GI K A KI Sbjct: 78 INGIGAKKAIAILSNFE-FEELAAIASSKNFKELAKVPGIGMKKAEKI 124 >gi|48374262|gb|AAT41954.1| putative DNA ligase [Fremyella diplosiphon Fd33] Length = 268 Score = 42.8 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 29/56 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + +LL + F V+ I+++ +A I GI +IA ++ F + + T Sbjct: 112 GIRHVGSVNAQLLTEKFSDVEKITQARQSDIAGIYGIGVEIAESVHQWFQIHANQT 167 >gi|307297547|ref|ZP_07577353.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermotogales bacterium mesG1.Ag.4.2] gi|306916807|gb|EFN47189.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermotogales bacterium mesG1.Ag.4.2] Length = 256 Score = 42.4 bits (98), Expect = 0.20, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 10/54 (18%) Query: 556 PLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYN 605 L +I GIG + + +++ F G+ + + + L + GI I +I Sbjct: 132 SLQDIPGIGEAKAKAIVE-FREKNGSFR-----TSDDLLKVPGIGPSILSEILA 179 Score = 42.4 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 14/50 (28%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKI 599 L+ + GIGP + R ++ FG+V E + + GI +K Sbjct: 58 ELELLPGIGPAKARAIIDYRTSVGQFGSV--------EDILQVRGIGEKT 99 Score = 41.2 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 12/78 (15%) Query: 541 AITTHRKRRKKAAYSP-LDEINGIGPLRKRLLL----------QSFGTVK-MISRSSPET 588 AI R++ S L ++ GIGP +L + G++K ++ + E Sbjct: 146 AIVEFREKNGSFRTSDDLLKVPGIGPSILSEILASIVPLVGSEKQSGSLKVNVNTADEEV 205 Query: 589 LASIEGISKKIACKIYNH 606 L + G+ IA +I Sbjct: 206 LCGLPGVGPVIAKRIVEF 223 >gi|167044562|gb|ABZ09235.1| putative DEAD/DEAH box helicase [uncultured marine crenarchaeote HF4000_APKG7F11] Length = 126 Score = 42.4 bits (98), Expect = 0.20, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 14/79 (17%) Query: 531 QRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETL 589 QR+ R+ I K L +I GIG +R R L ++ T + ++ +S L Sbjct: 59 QRI-----RYGI--------KEELIDLVKIKGIGRVRARRLYKNNIKTRQDLATTSVNQL 105 Query: 590 ASIEGISKKIACKIYNHFH 608 A+I+ I +A I + Sbjct: 106 AAIDKIGMAVANSIKSQLR 124 >gi|297571562|ref|YP_003697336.1| competence protein ComEA helix-hairpin-helix repeat protein [Arcanobacterium haemolyticum DSM 20595] gi|296931909|gb|ADH92717.1| competence protein ComEA helix-hairpin-helix repeat protein [Arcanobacterium haemolyticum DSM 20595] Length = 284 Score = 42.4 bits (98), Expect = 0.20, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 14/61 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQ------SFGTVKMISRSSPETLASIEGISKKIACKIYN 605 A+ + L + GIGP ++Q F ++ + L I GI +K +I + Sbjct: 227 ASATELQTVPGIGPATAAAIVQWREKNGKF--------AAVDDLTRISGIGEKTIERIRD 278 Query: 606 H 606 H Sbjct: 279 H 279 >gi|326318908|ref|YP_004236580.1| Holliday junction DNA helicase RuvA [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375744|gb|ADX48013.1| Holliday junction DNA helicase RuvA [Acidovorax avenae subsp. avenae ATCC 19860] Length = 190 Score = 42.4 bits (98), Expect = 0.20, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 5/51 (9%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRS-SPET---LASIEGISKKIACK 602 L +I+G+GP +L G V ++++ S + L + GI KK A + Sbjct: 74 ELIKISGVGPRTALSILSGMG-VDDLAQAVSLQEAGRLVKVPGIGKKTAER 123 >gi|120612876|ref|YP_972554.1| Holliday junction DNA helicase RuvA [Acidovorax citrulli AAC00-1] gi|166229622|sp|A1TUZ2|RUVA_ACIAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|120591340|gb|ABM34780.1| Holliday junction DNA helicase RuvA [Acidovorax citrulli AAC00-1] Length = 190 Score = 42.4 bits (98), Expect = 0.20, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 5/51 (9%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRS-SPET---LASIEGISKKIACK 602 L +I+G+GP +L G V ++++ S + L + GI KK A + Sbjct: 74 ELIKISGVGPRTALSILSGMG-VDDLAQAVSLQEAGRLVKVPGIGKKTAER 123 >gi|76803074|ref|YP_331169.1| 50S ribosomal protein L32e [Natronomonas pharaonis DSM 2160] gi|76558939|emb|CAI50535.1| ribosomal protein L32.eR [Natronomonas pharaonis DSM 2160] Length = 240 Score = 42.4 bits (98), Expect = 0.20, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Query: 556 PLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN 605 L +I+G+G + L + G TV + S + LA I+G+ +A +I Sbjct: 11 ELTDISGVGEAKAETL-REAGIETVDDLREKSQDELADIDGVGNALAARIKA 61 >gi|312144161|ref|YP_003995607.1| DNA ligase, NAD-dependent [Halanaerobium sp. 'sapolanicus'] gi|311904812|gb|ADQ15253.1| DNA ligase, NAD-dependent [Halanaerobium sp. 'sapolanicus'] Length = 670 Score = 42.4 bits (98), Expect = 0.20, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 G+G R L ++ ++ + +S E L I+ I IA I + F + + Sbjct: 519 GLGAAR--TLSDNYSSISQLMEASNEELEEIDEIGPVIADSIIDFFAEKQN 567 >gi|325109981|ref|YP_004271049.1| DNA protecting protein DprA [Planctomyces brasiliensis DSM 5305] gi|324970249|gb|ADY61027.1| DNA protecting protein DprA [Planctomyces brasiliensis DSM 5305] Length = 389 Score = 42.4 bits (98), Expect = 0.20, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 L+ + G+GP + +LL++FG+ + E I G+ KI ++ H++ Sbjct: 14 ALNLVRGVGPRLQTVLLETFGSATAALNAPVEQWRQIPGVGVKIIRELQERNHRD 68 >gi|15644305|ref|NP_229357.1| DNA repair protein RadC [Thermotoga maritima MSB8] gi|6685843|sp|Q9X1P3|Y1557_THEMA RecName: Full=UPF0758 protein TM_1557 gi|4982124|gb|AAD36623.1|AE001801_10 DNA repair protein [Thermotoga maritima MSB8] Length = 222 Score = 42.4 bits (98), Expect = 0.20, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Query: 569 RLLLQSF-GTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + LL+ F G++ +S +S E +AS+EG+ A + Sbjct: 46 KDLLERFDGSLIKLSNASLEEIASVEGVGMVKAITLKAAL 85 >gi|315646359|ref|ZP_07899477.1| YqxK [Paenibacillus vortex V453] gi|315278002|gb|EFU41322.1| YqxK [Paenibacillus vortex V453] Length = 404 Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMIS-RSSPETLASIEGISKKIACKI 603 PL+ I G+G LLQ+FGT I +++ LA++ G ++A I Sbjct: 335 PLEFIPGLGKSAMSKLLQAFGTEMNILHQATEAELAAVAG--DQLAASI 381 >gi|291569184|dbj|BAI91456.1| DNA ligase [Arthrospira platensis NIES-39] Length = 683 Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 26/54 (48%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G +LL Q+F + + ++ +S + + GI +IA +Y F + Sbjct: 523 GIRHVGKANAQLLAQNFPSCQSLAAASSAQIEGVYGIGAEIATSVYQWFQNPAN 576 >gi|259502857|ref|ZP_05745759.1| crossover junction endoribonuclease subunit A [Lactobacillus antri DSM 16041] gi|259169224|gb|EEW53719.1| crossover junction endoribonuclease subunit A [Lactobacillus antri DSM 16041] Length = 197 Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Query: 551 KAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKI 603 K + L ++GIGP +L G V I+ ++ L GI KK A +I Sbjct: 68 KQLFMQLINVSGIGPKSALAILANPDHQGLVDAIANNNISYLTKFPGIGKKTASQI 123 >gi|256823892|ref|YP_003147853.1| hypothetical protein Cyan8802_4638 [Cyanothece sp. PCC 8802] gi|256592566|gb|ACV03404.1| hypothetical protein Cyan8802_4638 [Cyanothece sp. PCC 8802] Length = 251 Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 23/34 (67%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSY 38 ++P PG+Y + + ++LY+GKA NL+ R S+ Sbjct: 55 KLPPQPGLYFVYTLDHQLLYLGKADNLRTRWNSH 88 >gi|184201319|ref|YP_001855526.1| NAD-dependent DNA ligase [Kocuria rhizophila DC2201] gi|254781351|sp|B2GL64|DNLJ_KOCRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|183581549|dbj|BAG30020.1| NAD(+)-dependent DNA ligase [Kocuria rhizophila DC2201] Length = 766 Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 25/51 (49%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +GP R L S ++ I ++ PETLA +G+ IA + F + Sbjct: 595 SIRHVGPTAARSLATSLRSMDAIRQADPETLAGTDGVGPVIAQAVQEFFAE 645 >gi|328953996|ref|YP_004371330.1| helicase, RecD/TraA family [Desulfobacca acetoxidans DSM 11109] gi|328454320|gb|AEB10149.1| helicase, RecD/TraA family [Desulfobacca acetoxidans DSM 11109] Length = 720 Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVK-MISRSSPETLASIEGISKKIACKI 603 KK S I GIGP+ + ++Q FG I + E LA +EGI K I Sbjct: 83 KKYLSSGF--IKGIGPVMAQRIVQKFGGQTFDIIETGIERLAEVEGIGPKRRQMI 135 >gi|225181342|ref|ZP_03734786.1| DNA polymerase I [Dethiobacter alkaliphilus AHT 1] gi|225167923|gb|EEG76730.1| DNA polymerase I [Dethiobacter alkaliphilus AHT 1] Length = 878 Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 + G+G LL+ FGT++ I + + L Sbjct: 194 GVPGVGEKTAIKLLKQFGTLEKIYE-NMDELK 224 >gi|150020120|ref|YP_001305474.1| DNA repair protein RadC [Thermosipho melanesiensis BI429] gi|149792641|gb|ABR30089.1| DNA repair protein RadC [Thermosipho melanesiensis BI429] Length = 213 Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Query: 569 RLLLQSF-GTVKMISRSSPETLASIEGISKKIACKIYNH 606 + +L F ++ +S++S E L I+G+ K A I Sbjct: 39 KKILNYFDNSLLKLSKASIEDLCKIKGLGKAKATTILAA 77 >gi|189425854|ref|YP_001953031.1| DNA polymerase I [Geobacter lovleyi SZ] gi|189422113|gb|ACD96511.1| DNA polymerase I [Geobacter lovleyi SZ] Length = 888 Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 21/70 (30%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG--------------ISKKIACKIY 604 + GIG L+Q FG++ + E A + G +S+ +A I Sbjct: 188 GVPGIGEKTAIKLVQQFGSMDNL----LERAAEVPGKVGEKLREFSEQARLSRTLATIIK 243 Query: 605 N---HFHKNT 611 + H + Sbjct: 244 DVPYELHPDQ 253 >gi|82703340|ref|YP_412906.1| competence protein ComEA helix-hairpin-helix region [Nitrosospira multiformis ATCC 25196] gi|82411405|gb|ABB75514.1| Competence protein ComEA helix-hairpin-helix region [Nitrosospira multiformis ATCC 25196] Length = 100 Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 8/53 (15%) Query: 556 PLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + ++ + G+ K S + L ++ GI K+ Sbjct: 33 ELESLQGIGPAKAKAIIDYRKKKGSFK-----SVDDLQNVSGIGPATVQKLRK 80 >gi|21674485|ref|NP_662550.1| DNA polymerase I [Chlorobium tepidum TLS] gi|21647674|gb|AAM72892.1| DNA polymerase I [Chlorobium tepidum TLS] Length = 950 Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 4/35 (11%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETL 589 D I G IGP LL+ +G+++ I ++ + L Sbjct: 221 DNIPGAKGIGPKTASSLLKKYGSLEGIY-ANIDAL 254 >gi|254480787|ref|ZP_05094034.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2148] gi|214039370|gb|EEB80030.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2148] Length = 677 Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 20/45 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G L + FG+ + +S E+L ++ + +A + F Sbjct: 523 VGEATALNLARHFGSWPELVAASEESLLDVDDVGPVVADHLRQFF 567 >gi|166032164|ref|ZP_02234993.1| hypothetical protein DORFOR_01867 [Dorea formicigenerans ATCC 27755] gi|166027887|gb|EDR46644.1| hypothetical protein DORFOR_01867 [Dorea formicigenerans ATCC 27755] Length = 745 Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I GIGP + + FG T++ I ++P+ L I GIS+K I + KN Sbjct: 101 IKGIGPKMADTIFRKFGLQTLE-IMENNPQELLKIRGISEKKLAAIVESYGKNQ 153 >gi|148747765|ref|YP_001285844.1| hypothetical protein GBVE2_gp038 [Geobacillus virus E2] gi|113715707|gb|ABI36856.1| hypothetical protein [Geobacillus virus E2] Length = 266 Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 12/85 (14%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAY-NLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 +++ + GVY + D +++Y+GK+ +L RI S + + + Sbjct: 151 KQKEIEKKHGVYFLYDHDKQLIYIGKSVHDLWGRIIS-------SAKER----NAVYYSY 199 Query: 61 TVTCTEVEALLLEANMIKRLKPRFN 85 +T T+ + + E I + KP+ N Sbjct: 200 ALTKTKSDTSVYEMYYISKYKPKLN 224 >gi|126668324|ref|ZP_01739283.1| DNA ligase, NAD-dependent [Marinobacter sp. ELB17] gi|126627241|gb|EAZ97879.1| DNA ligase, NAD-dependent [Marinobacter sp. ELB17] Length = 703 Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 21/45 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + L FG+++ I+ + L ++ + +A + + F Sbjct: 550 VGEATAKGLAGYFGSLEAIAEADESALQAVSDVGPIVAGHLRSFF 594 >gi|77458028|ref|YP_347533.1| NAD-dependent DNA ligase LigA [Pseudomonas fluorescens Pf0-1] gi|123731132|sp|Q3KFB2|DNLJ_PSEPF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|77382031|gb|ABA73544.1| DNA ligase [Pseudomonas fluorescens Pf0-1] Length = 785 Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 28/49 (57%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G ++L +S G+++ + ++ P+ L + I ++A +I++ F Sbjct: 535 GIPDVGEETAKVLARSLGSLERVQQALPQVLTYLPDIGLEVAHEIHSFF 583 >gi|317062114|ref|ZP_07926599.1| NAD-dependent DNA ligase [Fusobacterium ulcerans ATCC 49185] gi|313687790|gb|EFS24625.1| NAD-dependent DNA ligase [Fusobacterium ulcerans ATCC 49185] Length = 665 Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 27/66 (40%) Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 K+R + I IG +LL ++ + + + E L I+GI K A +Y+ Sbjct: 493 KKRDYSKVIYALGIPFIGKYSGKLLAEASRNIDNLMKMEIEELIEIDGIGDKGAKAVYDF 552 Query: 607 FHKNTS 612 + Sbjct: 553 LRDEEN 558 >gi|225027213|ref|ZP_03716405.1| hypothetical protein EUBHAL_01469 [Eubacterium hallii DSM 3353] gi|224955442|gb|EEG36651.1| hypothetical protein EUBHAL_01469 [Eubacterium hallii DSM 3353] Length = 373 Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 20/76 (26%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASI-------------------EGISKKI 599 I GIG ++ LL+ FG I + + I I K Sbjct: 13 NIAGIGVKTQKKLLEHFGHPSTIYNAPESEIKGILTTGQCKEVIASKNQKKIEASIRKLE 72 Query: 600 ACKIYNHFHKNTSHTP 615 +IY FH+ + P Sbjct: 73 KREIY-FFHRESQEYP 87 >gi|70726326|ref|YP_253240.1| hypothetical protein SH1325 [Staphylococcus haemolyticus JCSC1435] gi|68447050|dbj|BAE04634.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 234 Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 14/58 (24%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L +I G+GP + R ++ F ++ E L +I+GI K +I + Sbjct: 183 ELLKIPGVGPAKVREIIDYRQKNNTFHSI--------EDLKNIKGIGDKTFERIKEYI 232 >gi|302390929|ref|YP_003826749.1| DNA integrity scanning, DisA, linker region [Acetohalobium arabaticum DSM 5501] gi|302203006|gb|ADL11684.1| DNA integrity scanning, DisA, linker region [Acetohalobium arabaticum DSM 5501] Length = 373 Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 18/42 (42%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L+ +F + I +S + L ++G+ + A I + Sbjct: 320 IENLVDNFSDFQAILNASIDELDDVDGVGEVRAQAIKEGLKR 361 >gi|257065343|ref|YP_003145015.1| DNA ligase, NAD-dependent [Slackia heliotrinireducens DSM 20476] gi|256792996|gb|ACV23666.1| DNA ligase, NAD-dependent [Slackia heliotrinireducens DSM 20476] Length = 708 Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 23/54 (42%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G + ++ +++ + ++ E LA ++GI IA I + Sbjct: 544 GIRHVGKTTGEAIAAAYPSMEKLMNATEEGLAQVDGIGAVIAKSIVTFLATEDN 597 >gi|217979603|ref|YP_002363750.1| DNA ligase, NAD-dependent [Methylocella silvestris BL2] gi|254781370|sp|B8ETN6|DNLJ_METSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|217504979|gb|ACK52388.1| DNA ligase, NAD-dependent [Methylocella silvestris BL2] Length = 700 Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 12/66 (18%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSS---------PETLASIEGISKKIACKIYNHF-- 607 I +G R L + FG+ + + + +IEG+ + +A + + F Sbjct: 539 GIRHVGETNARRLARHFGSFSALRETGRAAAPGSEARAEINNIEGVGEVVAEAVADFFAE 598 Query: 608 -HKNTS 612 H + Sbjct: 599 PHNEEA 604 >gi|121535563|ref|ZP_01667371.1| helicase, RecD/TraA family [Thermosinus carboxydivorans Nor1] gi|121305891|gb|EAX46825.1| helicase, RecD/TraA family [Thermosinus carboxydivorans Nor1] Length = 719 Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHF 607 + G+GP L++ FG T+++I P L +EGI K A I+N + Sbjct: 90 VKGVGPAMAARLVKHFGERTLEIIEH-YPHRLVEVEGIGTKKAEMIHNSY 138 >gi|89096034|ref|ZP_01168927.1| hypothetical protein B14911_25095 [Bacillus sp. NRRL B-14911] gi|89088888|gb|EAR67996.1| hypothetical protein B14911_25095 [Bacillus sp. NRRL B-14911] Length = 124 Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 2/72 (2%) Query: 14 QMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLE 73 LD +++VGKA L++R+K + + + I +E + E Sbjct: 48 LFLDSNEDLMFVGKARKLRQRVKKHFEDTVSPIKDVR--HDVYKIALIYVEDPMEREIYE 105 Query: 74 ANMIKRLKPRFN 85 +I L+ ++N Sbjct: 106 TYIINTLQAKYN 117 >gi|218533192|ref|YP_002424008.1| helicase, RecD/TraA family [Methylobacterium chloromethanicum CM4] gi|218525495|gb|ACK86080.1| helicase, RecD/TraA family [Methylobacterium chloromethanicum CM4] Length = 750 Score = 42.4 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 562 GIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKI 603 GIGP + ++ FG + I + P+ L + GI K A +I Sbjct: 111 GIGPAMAKRIVALFGESTFEIIEAEPDRLMEVGGIGPKRAERI 153 >gi|154250371|ref|YP_001411196.1| helix-hairpin-helix repeat-containing competence protein ComEA [Fervidobacterium nodosum Rt17-B1] gi|154154307|gb|ABS61539.1| competence protein ComEA helix-hairpin-helix repeat protein [Fervidobacterium nodosum Rt17-B1] Length = 227 Score = 42.4 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L ++ GIGP + + ++ F ++ E + +++GI +K K+ Sbjct: 175 ELQKLPGIGPSKAQAIIDYREKVGKFKSI--------EEIKNVKGIGEKTYEKLKE 222 Score = 38.2 bits (87), Expect = 4.0, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ ++ E L + GI A I ++ Sbjct: 167 NINTANLEELQKLPGIGPSKAQAIIDY 193 >gi|15829191|ref|NP_326551.1| DNA polymerase I (POL I) [Mycoplasma pulmonis UAB CTIP] gi|17366622|sp|Q98PK2|EX53_MYCPU RecName: Full=5'-3' exonuclease gi|14090135|emb|CAC13893.1| DNA POLYMERASE I (POL I) [Mycoplasma pulmonis] Length = 297 Score = 42.4 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 L I GIG + LL +F +++ I ++L S ISK KI + Sbjct: 189 LKGIAGIGEKGAKNLLNNFKSLEKI----FDSLESTNLISKAQKQKIRD 233 >gi|313125027|ref|YP_004035291.1| DNA ligase, NAD-dependent [Halogeometricum borinquense DSM 11551] gi|312291392|gb|ADQ65852.1| DNA ligase, NAD-dependent [Halogeometricum borinquense DSM 11551] Length = 694 Score = 42.4 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 553 AYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 S L I +G R L ++FG++ + +S E L +E + +A KI F Sbjct: 527 LSSFLVGLGIPEVGGSTARNLARAFGSLDAVMDASVEELEEVEDVGPTVAEKIREFFDTE 586 Query: 611 TS 612 ++ Sbjct: 587 SN 588 >gi|259047457|ref|ZP_05737858.1| competence protein ComEA [Granulicatella adiacens ATCC 49175] gi|259035648|gb|EEW36903.1| competence protein ComEA [Granulicatella adiacens ATCC 49175] Length = 214 Score = 42.4 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 12/57 (21%) Query: 556 PLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L + GIG + +++ G+ K E L + GI KK+ Y F + Sbjct: 162 ELKTLKGIGEKKAEAIIEYRKQNGSFKN-----KEELMKVRGIGKKL----YESFQE 209 Score = 40.5 bits (93), Expect = 0.82, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 19/33 (57%) Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I+ ++ E L +++GI +K A I + +N S Sbjct: 154 NINTATVEELKTLKGIGEKKAEAIIEYRKQNGS 186 >gi|222476129|ref|YP_002564650.1| helix-hairpin-helix motif protein [Halorubrum lacusprofundi ATCC 49239] gi|222454500|gb|ACM58764.1| helix-hairpin-helix motif protein [Halorubrum lacusprofundi ATCC 49239] Length = 485 Score = 42.4 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 L ++G+G L ++ + T ++ ++ + L ++GI + A I H Sbjct: 205 LQSLSGVGKGTAPKLARNGYETRDDVAAATEQELREVQGIGESKAQSIRQSAH 257 >gi|229821759|ref|YP_002883285.1| protein of unknown function DUF147 [Beutenbergia cavernae DSM 12333] gi|259645239|sp|C5C1B3|DISA_BEUC1 RecName: Full=DNA integrity scanning protein disA gi|229567672|gb|ACQ81523.1| protein of unknown function DUF147 [Beutenbergia cavernae DSM 12333] Length = 359 Score = 42.4 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 16/35 (45%) Query: 573 QSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 FGT++ + +S E L ++G+ A + Sbjct: 312 DHFGTLQKMLSASVEDLQLVDGVGALRARSVREGL 346 >gi|292654282|ref|YP_003534179.1| DNA repair and recombination protein RadA [Haloferax volcanii DS2] gi|2500108|sp|Q48328|RADA_HALVO RecName: Full=DNA repair and recombination protein radA gi|1378032|gb|AAC44121.1| RadA [Haloferax volcanii] gi|291370076|gb|ADE02303.1| DNA repair and recombination protein RadA [Haloferax volcanii DS2] Length = 343 Score = 42.4 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606 L+ + G+GP L++S + + + I+ +SP L++ I A I N Sbjct: 6 LESLPGVGPATADKLVESGYDSYQSIAVASPGELSNKADIGSSTASDIINA 56 >gi|291335083|gb|ADD94712.1| NAD dependent DNA ligase [uncultured phage MedDCM-OCT-S09-C23] Length = 717 Score = 42.4 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 11/66 (16%) Query: 546 RKRRKKAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASI---EGISKKIAC 601 R++R I GI R L Q F ++ I ++S E LA G++ I Sbjct: 485 RQKRG-------MNIKGIAKKTLRQLFQEGFDSITSILQASEEDLAEALGKPGVAANIKK 537 Query: 602 KIYNHF 607 I F Sbjct: 538 AIDERF 543 >gi|260584663|ref|ZP_05852409.1| competence protein ComEA [Granulicatella elegans ATCC 700633] gi|260157686|gb|EEW92756.1| competence protein ComEA [Granulicatella elegans ATCC 700633] Length = 201 Score = 42.4 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 2/52 (3%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 A L I GIG + +LQ + E L ++GI KK I Sbjct: 145 ATLEELQTIKGIGKKKAEAILQYRKEHGAFR--TKEDLLQVKGIGKKALEAI 194 Score = 40.9 bits (94), Expect = 0.63, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNH 606 GT+ I+ ++ E L +I+GI KK A I + Sbjct: 138 GTI-NINTATLEELQTIKGIGKKKAEAILQY 167 >gi|91201914|emb|CAJ74974.1| similar to exodeoxyribonuclease V alpha subunit [Candidatus Kuenenia stuttgartiensis] Length = 735 Score = 42.4 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 5/56 (8%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIY 604 K S L I GIG + + ++ FG ++ +I S E L +EGI +K I Sbjct: 86 KYLGSGL--IKGIGTVMAKRIVSRFGVASLDIIEH-SIEQLKQVEGIGEKRIAMIK 138 >gi|71906106|ref|YP_283693.1| competence protein ComEA helix-hairpin-helix region [Dechloromonas aromatica RCB] gi|71845727|gb|AAZ45223.1| Competence protein ComEA helix-hairpin-helix region [Dechloromonas aromatica RCB] Length = 265 Score = 42.4 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 14/50 (28%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKI 599 LD + GIGP + + ++ F +V + L ++ GI Sbjct: 54 QLDGLKGIGPTKAKAIVDYRKKNGPFKSV--------DELQNVPGIGPAT 95 >gi|89095737|ref|ZP_01168631.1| hypothetical protein B14911_03369 [Bacillus sp. NRRL B-14911] gi|89089483|gb|EAR68590.1| hypothetical protein B14911_03369 [Bacillus sp. NRRL B-14911] Length = 235 Score = 42.4 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 8/71 (11%) Query: 15 MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74 M + LY+G+ +++ R+ S+ N+T R + +I + ++E LLE Sbjct: 44 MFNKQRSCLYIGEG-DIRTRLNSH----NNTGRFGKLAREIV---YYRVEDQLERKLLER 95 Query: 75 NMIKRLKPRFN 85 +I KP FN Sbjct: 96 ILIYHYKPLFN 106 >gi|332711096|ref|ZP_08431030.1| DNA protecting protein DprA [Lyngbya majuscula 3L] gi|332350078|gb|EGJ29684.1| DNA protecting protein DprA [Lyngbya majuscula 3L] Length = 377 Score = 42.4 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 25/45 (55%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 E+ GIG + + L Q FGT+ ++S L ++EG ++ ++ Sbjct: 15 EVPGIGSVLLQRLHQQFGTLAEAWKASASELGAVEGFGVRLIERV 59 >gi|218710253|ref|YP_002417874.1| NAD-dependent DNA ligase LigA [Vibrio splendidus LGP32] gi|254782307|sp|B7VIK3|DNLJ_VIBSL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218323272|emb|CAV19449.1| DNA ligase [Vibrio splendidus LGP32] Length = 670 Score = 42.4 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 23/52 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L Q F T++++ ++ E L + I +A + + F + + Sbjct: 521 VGEATAMNLAQHFKTLELVQAATHEQLVEVSDIGDIVASHLTSFFSQEKNRA 572 >gi|212697125|ref|ZP_03305253.1| hypothetical protein ANHYDRO_01691 [Anaerococcus hydrogenalis DSM 7454] gi|212675900|gb|EEB35507.1| hypothetical protein ANHYDRO_01691 [Anaerococcus hydrogenalis DSM 7454] Length = 510 Score = 42.4 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%) Query: 550 KKAAYSPLD--EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN 605 KKA S L I IG +L+ + F ++ ++ S E L +I GI KK KI Sbjct: 75 KKAIISYLASGNIESIGKKTAQLIYEKFKDDSIDVVFNQS-EKLLTIPGIGKKKLEKIKE 133 >gi|158340726|ref|YP_001521894.1| hypothetical protein AM1_D0085 [Acaryochloris marina MBIC11017] gi|158310967|gb|ABW32580.1| hypothetical protein AM1_D0085 [Acaryochloris marina MBIC11017] Length = 99 Score = 42.4 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 21/34 (61%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKR 34 ++ + +PE G+Y ++ ++YVG+ NL+ R Sbjct: 10 INLDPLPEICGIYFVVTAEDEIIYVGQTTNLKNR 43 >gi|195952416|ref|YP_002120706.1| 5'-3' exonuclease [Hydrogenobaculum sp. Y04AAS1] gi|195932028|gb|ACG56728.1| 5'-3' exonuclease [Hydrogenobaculum sp. Y04AAS1] Length = 299 Score = 42.4 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 11/43 (25%) Query: 559 EINGIGPLRKRLLLQSFGTVKMI-----------SRSSPETLA 590 I G+GP + LL+ +G+++ I +S E L Sbjct: 188 GIKGVGPKKAVELLEKYGSIENILNNWDEIQKTFKEASKEDLE 230 >gi|84489168|ref|YP_447400.1| hypothetical protein Msp_0354 [Methanosphaera stadtmanae DSM 3091] gi|84372487|gb|ABC56757.1| MutS [Methanosphaera stadtmanae DSM 3091] Length = 644 Score = 42.4 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 4/57 (7%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVK----MISRSSPETLASIEGISKKIACKIYNHFH 608 +++I G+G ++QS+G+ + + L +I+G+S+K A +I H Sbjct: 6 EIEQIKGVGSKLIDKIIQSYGSYDVFVNSVLEYDIDKLMNIQGLSQKKALEIIRFIH 62 >gi|86148411|ref|ZP_01066703.1| DNA ligase [Vibrio sp. MED222] gi|85833825|gb|EAQ51991.1| DNA ligase [Vibrio sp. MED222] Length = 670 Score = 42.4 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 23/52 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L Q F T++++ ++ E L + I +A + + F + + Sbjct: 521 VGEATAMNLAQHFKTLELVQAATHEQLVEVSDIGDIVASHLTSFFSQEKNRA 572 >gi|84393803|ref|ZP_00992550.1| DNA ligase [Vibrio splendidus 12B01] gi|84375600|gb|EAP92500.1| DNA ligase [Vibrio splendidus 12B01] Length = 670 Score = 42.4 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 23/52 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G L Q F T++++ ++ E L + I +A + + F + + Sbjct: 521 VGEATAMNLAQHFKTLELVQAATHEQLVEVSDIGDIVASHLTSFFSQEKNRA 572 >gi|253577150|ref|ZP_04854470.1| DNA-binding protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251843394|gb|EES71422.1| DNA-binding protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 359 Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 19/40 (47%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L++ FG + + +S E L ++GI + A I + Sbjct: 309 NLVERFGRLPNVMMASIEELDEVDGIGEVRARSIKEGLKR 348 >gi|237743296|ref|ZP_04573777.1| NAD-dependent DNA ligase [Fusobacterium sp. 7_1] gi|229433075|gb|EEO43287.1| NAD-dependent DNA ligase [Fusobacterium sp. 7_1] Length = 696 Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 26/55 (47%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I IG + ++L ++ + + + E L SI+GI + A +I F K + Sbjct: 537 GIAEIGKVTSKILAKASKNIDKLMTMTFEELTSIDGIGEIAANEIIAFFAKEKNQ 591 >gi|149184723|ref|ZP_01863041.1| DNA ligase [Erythrobacter sp. SD-21] gi|148832043|gb|EDL50476.1| DNA ligase [Erythrobacter sp. SD-21] Length = 690 Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 10/66 (15%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISR------SSPET----LASIEGISKKIACKIYNHFH 608 I +G + R L++ F + + + E L SI+GI + + + FH Sbjct: 527 GIRHVGAVTARDLMKHFHELPALREAAEAAHAGDEEAAASLTSIDGIGGAVVEALGDFFH 586 Query: 609 KNTSHT 614 ++ + Sbjct: 587 EDHNKA 592 >gi|114776898|ref|ZP_01451941.1| DNA processing protein DprA [Mariprofundus ferrooxydans PV-1] gi|114552984|gb|EAU55415.1| DNA processing protein DprA [Mariprofundus ferrooxydans PV-1] Length = 369 Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 28/44 (63%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 L ++GIGP+ R LL + G ++ + ++ + L +++G+ +++ Sbjct: 11 RLSMVHGIGPMLGRRLLAAIGGIEALWSATGDELRAVDGMGQQL 54 >gi|15604609|ref|NP_221127.1| DNA polymerase I [Rickettsia prowazekii str. Madrid E] gi|6015004|sp|O05949|DPO1_RICPR RecName: Full=DNA polymerase I; Short=POL I gi|2073478|emb|CAA72476.1| DNA polymerase I [Rickettsia prowazekii] gi|3861304|emb|CAA15203.1| DNA POLYMERASE I (polA) [Rickettsia prowazekii] gi|5912302|emb|CAB56085.1| DNA polymerase I [Rickettsia prowazekii] gi|5912306|emb|CAB56089.1| DNA polymerase I [Rickettsia prowazekii] gi|292572425|gb|ADE30340.1| DNA polymerase I [Rickettsia prowazekii Rp22] Length = 867 Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 D I G IGP L+ FG+V+ I S + ++SI+ Sbjct: 186 DNIPGVPSIGPKTASSLITKFGSVENIFN-SLDQISSIK 223 >gi|81299514|ref|YP_399722.1| DNA processing protein DprA, putative [Synechococcus elongatus PCC 7942] gi|81168395|gb|ABB56735.1| DNA processing protein DprA, putative [Synechococcus elongatus PCC 7942] Length = 402 Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 20/48 (41%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 L + +GP R LL FG + + L ++GI +A I Sbjct: 33 ALSHVPRLGPALLRRLLMHFGCFEAAWEAPTTALLEVDGIGLLLAEAI 80 >gi|78357136|ref|YP_388585.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|123768784|sp|Q30ZK6|DNLJ_DESDG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|78219541|gb|ABB38890.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 705 Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 22/49 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G R L FG + + R+ ETL S+ I ++A I F Sbjct: 530 GIRHVGEQTARTLAARFGNMDELMRADQETLQSLRDIGGEVAGSIRAFF 578 >gi|77919931|ref|YP_357746.1| Holliday junction DNA helicase RuvA [Pelobacter carbinolicus DSM 2380] gi|90135490|sp|Q3A231|RUVA_PELCD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|77546014|gb|ABA89576.1| Holliday junction DNA helicase subunit RuvA [Pelobacter carbinolicus DSM 2380] Length = 197 Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 3/62 (4%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTV---KMISRSSPETLASIEGISKKIACKIYNHF 607 K + L ++G+GP +L + +S+ + + LA++ GI KK A ++ Sbjct: 68 KDLFGLLLSVSGVGPKVALNILSHLPAADLQQALSQGNAKHLATVPGIGKKTAERLVLEL 127 Query: 608 HK 609 + Sbjct: 128 RE 129 >gi|56750836|ref|YP_171537.1| DNA processing protein [Synechococcus elongatus PCC 6301] gi|56685795|dbj|BAD79017.1| DNA processing protein [Synechococcus elongatus PCC 6301] Length = 406 Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 20/48 (41%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 L + +GP R LL FG + + L ++GI +A I Sbjct: 37 ALSHVPRLGPALLRRLLMHFGCFEAAWEAPTTALLEVDGIGLLLAEAI 84 >gi|320095501|ref|ZP_08027169.1| DNA integrity scanning protein [Actinomyces sp. oral taxon 178 str. F0338] gi|319977563|gb|EFW09238.1| DNA integrity scanning protein [Actinomyces sp. oral taxon 178 str. F0338] Length = 356 Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%) Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNH-FHKN 610 T+ + +S E L +EG+ A I+ + H++ Sbjct: 312 TLSQLRSASVEELQKVEGVGPYRAKIIHENLLHQS 346 >gi|116872913|ref|YP_849694.1| ComEA family DNA-binding competence protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741791|emb|CAK20915.1| DNA-binding competence protein 1, ComEA family [Listeria welshimeri serovar 6b str. SLCC5334] Length = 201 Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 A + L ++ GIG + +++ + + + + E L ++ GI +K K+ + Sbjct: 145 ATKADLQQVPGIGDSKATAIIEY-REKEGLYQ-TIEDLKNVSGIGEKTVEKLKEYL 198 >gi|307717956|ref|YP_003873488.1| DNA polymerase I [Spirochaeta thermophila DSM 6192] gi|38146989|gb|AAR11879.1| DNA polymerase I [Spirochaeta thermophila DSM 6578] gi|306531681|gb|ADN01215.1| DNA polymerase I [Spirochaeta thermophila DSM 6192] Length = 897 Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 4/36 (11%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590 D I G IG + LL +G+++ + + + L+ Sbjct: 187 DNIPGVEGIGEKTAQRLLAEYGSLEGVY-AHLDELS 221 >gi|327541957|gb|EGF28460.1| NAD-dependent DNA ligase LigA [Rhodopirellula baltica WH47] Length = 754 Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 2/65 (3%) Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + S I IGP +L+ F + ++ + E LA+I I +IA + H Sbjct: 587 ARVLSSI--SIRHIGPRVAKLITAKFWNLDLLRSAKAEDLAAIHEIGDRIAESLVKFIHS 644 Query: 610 NTSHT 614 + Sbjct: 645 ESGSQ 649 >gi|327399848|ref|YP_004340717.1| helix-turn-helix domain-containing protein [Hippea maritima DSM 10411] gi|327182477|gb|AEA34658.1| helix-hairpin-helix motif protein [Hippea maritima DSM 10411] Length = 105 Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 4/67 (5%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH-K 609 KA L ++ GIG + +++ + I + + L ++GI KK I F K Sbjct: 38 KATVEELLKVKGIGKSKAEAIVKFVK-KERIK--TMDELLKVKGIGKKTLKNIEEMFEVK 94 Query: 610 NTSHTPT 616 S P+ Sbjct: 95 TESSKPS 101 Score = 39.7 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 15/30 (50%) Query: 581 ISRSSPETLASIEGISKKIACKIYNHFHKN 610 I++++ E L ++GI K A I K Sbjct: 36 INKATVEELLKVKGIGKSKAEAIVKFVKKE 65 >gi|296269731|ref|YP_003652363.1| helicase, RecD/TraA family [Thermobispora bispora DSM 43833] gi|296092518|gb|ADG88470.1| helicase, RecD/TraA family [Thermobispora bispora DSM 43833] Length = 746 Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 5/59 (8%) Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH 606 ++ S L I GIGP ++ FG T+++I PE L + G+ K I + Sbjct: 97 QRYLGSGL--IKGIGPKMAERIVNHFGTDTLRVIEE-EPERLTEVPGLGPKRMKMIADA 152 >gi|260903685|ref|ZP_05912007.1| 5'-3' exonuclease (including N-terminal domain of PolI) [Brevibacterium linens BL2] Length = 578 Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 10/55 (18%) Query: 561 NGIGPLRKRLLLQSFGTVKMI---SRSSPETLASIEGISKKIACKIY---NHFHK 609 GIG LL +FG+++ I +++ G+S K A + HK Sbjct: 198 PGIGEKTAATLLANFGSLESIIKAAKAGV----KTGGLSPKRAATLIEEEETLHK 248 >gi|32476578|ref|NP_869572.1| DNA ligase [Rhodopirellula baltica SH 1] gi|81659473|sp|Q7UKD1|DNLJ_RHOBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|32447124|emb|CAD76950.1| DNA ligase [Rhodopirellula baltica SH 1] Length = 706 Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 2/65 (3%) Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + S I IGP +L+ F + ++ + E LA+I I +IA + H Sbjct: 539 ARVLSSI--SIRHIGPRVAKLITAKFWNLDLLRSAKAEDLAAIHEIGDRIAESLVKFIHS 596 Query: 610 NTSHT 614 + Sbjct: 597 ESGSQ 601 >gi|325847844|ref|ZP_08170066.1| helicase, RecD/TraA family [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480862|gb|EGC83915.1| helicase, RecD/TraA family [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 544 Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%) Query: 550 KKAAYSPLD--EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN 605 KKA S L I IG +L+ + F ++ ++ S E L +I GI KK KI Sbjct: 75 KKAIISYLASGNIESIGKKTAQLIYEKFKDDSIDVVFNQS-EKLLTIPGIGKKKLEKIKE 133 >gi|300311698|ref|YP_003775790.1| DNA polymerase IV protein [Herbaspirillum seropedicae SmR1] gi|300074483|gb|ADJ63882.1| DNA polymerase IV protein [Herbaspirillum seropedicae SmR1] Length = 593 Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Query: 554 YSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPE-TLASIEGISKKIACKIYNHF 607 ++ L I G+GP R + L + G ++K + ++ + I G K I + Sbjct: 92 FNDLLAIPGLGPKRVQRLNHALGISSIKQLREAAIAGKVRDIPGFGPKTEQSILSAI 148 >gi|157812533|gb|ABV80323.1| UvrABC system protein C [Gluconacetobacter diazotrophicus PAl 5] Length = 80 Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 34/77 (44%) Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 D ++ +CIQ F G+N G FF + I+ FL QFY DKP P Sbjct: 1 DADIVAIAQAAGHSCIQVFFIRGGRNNGNRAFFPAHARDEAAPDIVGAFLAQFYDDKPPP 60 Query: 301 ENILLSEEAEETSLLEI 317 ILL+ E E L+ Sbjct: 61 AQILLNCEIAEHDLMAD 77 >gi|307266907|ref|ZP_07548426.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306918064|gb|EFN48319.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 204 Score = 42.4 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 10/58 (17%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYN 605 A L + GIGP+ +++ F G+ K I E + ++ I K+ +I + Sbjct: 148 ATKEELQTLPGIGPVTAERIIE-FRESKGSFKKI-----EDIMNVPRIGPKMFEQIKD 199 >gi|291461228|ref|ZP_06600301.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693] gi|291378193|gb|EFE85711.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693] Length = 370 Score = 42.4 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 4/49 (8%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 D I G IG + + + +++ I + + L +IEGI + + Sbjct: 190 DGIPGVTKIGEKKALAIFSKYDSLEKIYE-NIDDLKNIEGIGPSLIKNL 237 >gi|195977913|ref|YP_002123157.1| NAD-dependent DNA ligase LigA [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|254781421|sp|B4U2C7|DNLJ_STREM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|195974618|gb|ACG62144.1| DNA ligase LigA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 652 Score = 42.4 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 29/56 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I IG RL+L+++G ++ + + E LA I+G+ I + +F ++ + Sbjct: 502 GIRHIGAKASRLILETYGDLETLLSVTAEELAQIDGLGLVIGQSLVQYFQQDQATQ 557 Score = 40.1 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 6/60 (10%) Query: 559 EINGIGPLRKRLL----LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I G+GP L L V I R S E L ++GI +K A K+ ++ +++ Sbjct: 436 NIAGLGPAVVEKLYSAGLVH--DVTDIYRLSLEDLLMLDGIKEKSAEKLLAAIEQSKANS 493 >gi|212634787|ref|YP_002311312.1| NAD-dependent DNA ligase [Shewanella piezotolerans WP3] gi|254781417|sp|B8CN91|DNLJ_SHEPW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|212556271|gb|ACJ28725.1| NAD-dependent DNA ligase [Shewanella piezotolerans WP3] Length = 668 Score = 42.4 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 7/45 (15%), Positives = 17/45 (37%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G L F T+ + +S E ++ + +A + + Sbjct: 520 VGEATAANLAAYFKTLDALKGASAEEFIKVDDVGAIVAAHLAHFL 564 >gi|160901849|ref|YP_001567430.1| DNA integrity scanning protein DisA [Petrotoga mobilis SJ95] gi|160359493|gb|ABX31107.1| protein of unknown function DUF147 [Petrotoga mobilis SJ95] Length = 369 Score = 42.4 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 21/40 (52%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 + +++SF ++ + ++ E L I GI K+ A I + Sbjct: 308 KKVVESFKNLQELMNATFEELTDISGIGKRRAEIILGTLN 347 >gi|57241980|ref|ZP_00369920.1| competence protein ComEA [Campylobacter upsaliensis RM3195] gi|57017172|gb|EAL53953.1| competence protein ComEA [Campylobacter upsaliensis RM3195] Length = 79 Score = 42.4 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 13/59 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS-----FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A L + GIG + + +L F ++ E L ++GI K +I + Sbjct: 24 ATLEELKSLKGIGETKAKAILDYRKEQNFTSI--------EELKKVKGIGDKTFEEIKD 74 >gi|119512036|ref|ZP_01631131.1| DNA ligase [Nodularia spumigena CCY9414] gi|119463326|gb|EAW44268.1| DNA ligase [Nodularia spumigena CCY9414] Length = 678 Score = 42.4 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 29/55 (52%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I +G + +LL Q + TV+ ++ + +A I GI +IA +Y F + +H Sbjct: 522 GIRHVGSVNAQLLTQKYPTVEELATAKQSDIAGIYGIGAEIAQSVYQWFRIDANH 576 >gi|119774380|ref|YP_927120.1| DNA uptake protein-related DNA-binding protein [Shewanella amazonensis SB2B] gi|119766880|gb|ABL99450.1| DNA uptake protein-related DNA-binding protein [Shewanella amazonensis SB2B] Length = 103 Score = 42.4 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 8/51 (15%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKI 599 A S L + GIG + + +++ +G +S E L + G+ +K+ Sbjct: 48 ATESELQLLKGIGQAKAKAIVEYRNQYG-----RFASVEDLTKVAGVGQKV 93 >gi|330444657|ref|YP_004377643.1| RecD/TraA family helicase [Chlamydophila pecorum E58] gi|328807767|gb|AEB41940.1| helicase, RecD/TraA family [Chlamydophila pecorum E58] Length = 741 Score = 42.4 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%) Query: 553 AYSPLDEINGIGPLRKRLLLQSFGTVK-MISRSSPETLASIEGISKKIACKIYNHFHK 609 S L I GIGP ++++F T + +PE L + GISK + H+ Sbjct: 87 LTSKL--IKGIGPKLATKIIETFQTETLNVLDLTPERLIEVPGISKARVESLCQQLHE 142 >gi|327394702|dbj|BAK12124.1| DNA ligase LigA [Pantoea ananatis AJ13355] Length = 672 Score = 42.4 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 6/50 (12%), Positives = 22/50 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FG ++ + + + L +++ + +A + + + ++ Sbjct: 520 VGEATAANLANHFGELQKVMDADLDALIAVQDVGTVVAKHVRHFMEEESN 569 >gi|319400926|gb|EFV89145.1| competence ComEA helix-hairpin-helix repeat region domain protein [Staphylococcus epidermidis FRI909] Length = 224 Score = 42.4 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A L I GIGP + + +L F ++ L I+G KK K+ Sbjct: 169 ATEEQLKNIPGIGPSKAKDILNYREKNNGFNSIN--------DLMKIKGFGKKTFEKLKE 220 Query: 606 HF 607 HF Sbjct: 221 HF 222 >gi|291618312|ref|YP_003521054.1| LigA [Pantoea ananatis LMG 20103] gi|291153342|gb|ADD77926.1| LigA [Pantoea ananatis LMG 20103] Length = 672 Score = 42.4 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 6/50 (12%), Positives = 22/50 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G L FG ++ + + + L +++ + +A + + + ++ Sbjct: 520 VGEATAANLANHFGELQKVMDADLDALIAVQDVGTVVAKHVRHFMEEESN 569 >gi|237740779|ref|ZP_04571260.1| DNA polymerase I [Fusobacterium sp. 2_1_31] gi|229422796|gb|EEO37843.1| DNA polymerase I [Fusobacterium sp. 2_1_31] Length = 916 Score = 42.4 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 4/49 (8%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 D I G IG + + + +++ I + + L +IEGI + + Sbjct: 190 DGIPGVTKIGEKKALAIFSKYDSLEKIYE-NIDDLKNIEGIGPSLIKNL 237 >gi|227874488|ref|ZP_03992663.1| possible helix-hairpin-helix repeat-containing competence protein ComEA [Oribacterium sinus F0268] gi|227839677|gb|EEJ50132.1| possible helix-hairpin-helix repeat-containing competence protein ComEA [Oribacterium sinus F0268] Length = 218 Score = 42.4 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 8/57 (14%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A L+ + GIGP + +++ +G S E + +++ I KI KI Sbjct: 163 ATEQELESLKGIGPATAKNIIRYREEYGGFS-----SIEEIKNVKRIGDKIFEKIKA 214 >gi|251795439|ref|YP_003010170.1| 5'-3' exonuclease [Paenibacillus sp. JDR-2] gi|247543065|gb|ACT00084.1| 5'-3' exonuclease [Paenibacillus sp. JDR-2] Length = 285 Score = 42.4 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 10/53 (18%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI---YNHFH 608 + GIG LLQ F ++ I L++++ +SK I KI + H Sbjct: 194 GVKGIGEKTALKLLQEFESIDGI-------LSNLDSVSKSIKAKIEADLDMLH 239 >gi|15078917|ref|NP_149668.1| 205R [Invertebrate iridescent virus 6] gi|82012211|sp|Q91FW5|VF205_IIV6 RecName: Full=Putative DNA ligase 205R gi|15042287|gb|AAK82067.1|AF303741_205 205R [Invertebrate iridescent virus 6] Length = 615 Score = 42.4 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 22/45 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 IG + LLLQ + + + L SIEGI K A +I HF Sbjct: 472 IGEKKILLLLQKYPNLFELENLDAIDLVSIEGIGSKTATQIKQHF 516 >gi|326773589|ref|ZP_08232872.1| competence protein [Actinomyces viscosus C505] gi|326636819|gb|EGE37722.1| competence protein [Actinomyces viscosus C505] Length = 257 Score = 42.4 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 14/53 (26%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKK 598 A+ S L+++ GIGP + +++ F +S + L + GI K Sbjct: 202 ASASELEKLPGIGPALAQRIVEHRDSHGPF--------ASVDALTDVPGIGKA 246 Score = 40.9 bits (94), Expect = 0.62, Method: Composition-based stats. Identities = 8/27 (29%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S L + GI +A +I H Sbjct: 198 NINTASASELEKLPGIGPALAQRIVEH 224 >gi|326389890|ref|ZP_08211454.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermoanaerobacter ethanolicus JW 200] gi|325994158|gb|EGD52586.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermoanaerobacter ethanolicus JW 200] Length = 201 Score = 42.4 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 10/58 (17%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYN 605 A L + GIGP+ +++ F G+ K I E + ++ I K+ +I + Sbjct: 145 ATKEELQTLPGIGPVTAERIIE-FRENKGSFKKI-----EDIMNVPRIGPKMFEQIKD 196 Score = 38.2 bits (87), Expect = 4.9, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%) Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I+ ++ E L ++ GI A +I F +N Sbjct: 141 NINTATKEELQTLPGIGPVTAERIIE-FRENKGS 173 >gi|302388956|ref|YP_003824777.1| helicase, RecD/TraA family [Thermosediminibacter oceani DSM 16646] gi|302199584|gb|ADL07154.1| helicase, RecD/TraA family [Thermosediminibacter oceani DSM 16646] Length = 729 Score = 42.4 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 5/58 (8%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHF--HKNTSH 613 I GIGP + +++ FG T++ I SSP L I GI +K I F K T Sbjct: 90 IKGIGPATAKKIVERFGENTLE-IMSSSPHRLMEIAGIGQKRLEMIVRSFAEQKETRE 146 >gi|257467825|ref|ZP_05631921.1| NAD-dependent DNA ligase [Fusobacterium ulcerans ATCC 49185] Length = 688 Score = 42.4 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 27/66 (40%) Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 K+R + I IG +LL ++ + + + E L I+GI K A +Y+ Sbjct: 516 KKRDYSKVIYALGIPFIGKYSGKLLAEASRNIDNLMKMEIEELIEIDGIGDKGAKAVYDF 575 Query: 607 FHKNTS 612 + Sbjct: 576 LRDEEN 581 >gi|254168995|ref|ZP_04875834.1| Anticodon-binding domain family [Aciduliprofundum boonei T469] gi|197622101|gb|EDY34677.1| Anticodon-binding domain family [Aciduliprofundum boonei T469] Length = 1007 Score = 42.4 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Query: 559 EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I GI R LL + +G++ + + PE +A G+ K+A ++ ++ Sbjct: 768 SIPGIDDYRAELLFKMGYGSIYELMEAEPEQIAEATGMPLKLANELIDYL 817 >gi|163814858|ref|ZP_02206246.1| hypothetical protein COPEUT_01008 [Coprococcus eutactus ATCC 27759] gi|158449797|gb|EDP26792.1| hypothetical protein COPEUT_01008 [Coprococcus eutactus ATCC 27759] Length = 797 Score = 42.4 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 3/52 (5%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I G+G + +++ F ++++I PE LA I GIS++ A +I +++ Sbjct: 87 IKGVGEALAKRIVKKFKMDSLRIIEE-EPERLAEIRGISERKAREIAVSYNE 137 >gi|188995252|ref|YP_001929504.1| DNA ligase [Porphyromonas gingivalis ATCC 33277] gi|254781390|sp|B2RKL2|DNLJ_PORG3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|188594932|dbj|BAG33907.1| DNA ligase [Porphyromonas gingivalis ATCC 33277] Length = 669 Score = 42.4 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 17/76 (22%) Query: 549 RKKAAYSPLDEIN--------------GI---GPLRKRLLLQSFGTVKMISRSSPETLAS 591 +K+AA LD I GI G + L + ++ ++ ++ E L Sbjct: 488 KKRAAAKLLDSIEASKARPYQAILFGLGIRFVGETVAKKLAAVYPSIDALAAATSEELVQ 547 Query: 592 IEGISKKIACKIYNHF 607 I+ I ++IA + + F Sbjct: 548 IDEIGERIAAAVLHFF 563 >gi|148241522|ref|YP_001226679.1| Rossmann fold nucleotide-binding protein involved in DNA uptake [Synechococcus sp. RCC307] gi|147849832|emb|CAK27326.1| Predicted Rossmann fold nucleotide-binding protein involved in DNA uptak [Synechococcus sp. RCC307] Length = 364 Score = 42.4 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 23/41 (56%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 ++ G+G R + L Q+FG+++ + E L ++ G+ + Sbjct: 14 QVPGVGISRIKQLEQAFGSLQAAWWAPAEQLLALPGVGPSL 54 >gi|148271754|ref|YP_001221315.1| hypothetical protein CMM_0575 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829684|emb|CAN00600.1| hypothetical protein CMM_0575 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 247 Score = 42.4 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 3/53 (5%) Query: 11 GVYQMLDIAGRVLYVGKAY-NLQKRIKSYMHSNNHTHRITHM--ISQINNIRF 60 GVY D G +YVG+ L+ RI+ ++ + + + ++ + Sbjct: 33 GVYAFYDYDGEPIYVGQTNERLRTRIRRHLTNQRTDAVAMRILDVFEVAAVEV 85 >gi|307243483|ref|ZP_07525634.1| comEA protein [Peptostreptococcus stomatis DSM 17678] gi|306493127|gb|EFM65129.1| comEA protein [Peptostreptococcus stomatis DSM 17678] Length = 261 Score = 42.4 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L+ I G+GP + ++ T + + E + ++ GI K + + Sbjct: 209 SLESIPGVGPATAKKIVDY-RTKQGKFNA-IEDIKNVSGIGDKKFESMKDFI 258 >gi|237756712|ref|ZP_04585213.1| DNA ligase [Sulfurihydrogenibium yellowstonense SS-5] gi|237691122|gb|EEP60229.1| DNA ligase [Sulfurihydrogenibium yellowstonense SS-5] Length = 215 Score = 42.4 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 22/50 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + + L + + + + L + + K+A +IYN FH + Sbjct: 63 VGEVTAKTLASAVKCIDDLKDFTITDLIKLPDVGDKVASEIYNFFHNQQN 112 >gi|260590048|ref|ZP_05855961.1| helicase, RecD/TraA family [Blautia hansenii DSM 20583] gi|260539560|gb|EEX20129.1| helicase, RecD/TraA family [Blautia hansenii DSM 20583] Length = 744 Score = 42.4 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603 I GIG +++ FG T+ I + PE LA ++GIS++ A +I Sbjct: 89 IKGIGAALAARIVRHFGDDTL-RIIETEPERLAEVKGISERKAREI 133 >gi|331084364|ref|ZP_08333468.1| RecD/TraA family helicase [Lachnospiraceae bacterium 6_1_63FAA] gi|330401628|gb|EGG81209.1| RecD/TraA family helicase [Lachnospiraceae bacterium 6_1_63FAA] Length = 744 Score = 42.4 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603 I GIG +++ FG T+ I + PE LA ++GIS++ A +I Sbjct: 89 IKGIGAALAARIVRHFGDDTL-RIIETEPERLAEVKGISERKAREI 133 >gi|255658136|ref|ZP_05403545.1| DNA polymerase I [Mitsuokella multacida DSM 20544] gi|260849443|gb|EEX69450.1| DNA polymerase I [Mitsuokella multacida DSM 20544] Length = 878 Score = 42.4 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 6/48 (12%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 I G+GP LL ++G+V+ + + E ++ KK+ ++ + Sbjct: 200 GIPGVGPKTASKLLLAYGSVENVL-AHVEDVS-----GKKLKERLMEY 241 >gi|92118342|ref|YP_578071.1| helicase RecD/TraA [Nitrobacter hamburgensis X14] gi|91801236|gb|ABE63611.1| Helicase RecD/TraA [Nitrobacter hamburgensis X14] Length = 733 Score = 42.4 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 18/71 (25%) Query: 549 RKKAAYSP----LDEIN---------GIGPLRKRLLLQSFGTVKMI---SRSSPETLASI 592 R K + LD I GIGP+ + L+++FG + + + PE L + Sbjct: 75 RAKFLKTSEPTSLDGIEKYLGSGMIRGIGPVYAKKLVRAFG--EKVFDTIEAEPERLREV 132 Query: 593 EGISKKIACKI 603 GI A +I Sbjct: 133 TGIGPVRAYRI 143 >gi|302344112|ref|YP_003808641.1| DNA ligase, NAD-dependent [Desulfarculus baarsii DSM 2075] gi|301640725|gb|ADK86047.1| DNA ligase, NAD-dependent [Desulfarculus baarsii DSM 2075] Length = 691 Score = 42.4 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 18/65 (27%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSS---------------PETLASIEGISKKIACKI 603 I G+G +LL Q G+++ + ++ + +A G+ K A I Sbjct: 521 GIPGVGQETAKLLAQRLGSLEALVAAADGWRKPAKDRPAGLYLDDIA---GVGPKTAEDI 577 Query: 604 YNHFH 608 F Sbjct: 578 QRFFQ 582 >gi|256752162|ref|ZP_05493028.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermoanaerobacter ethanolicus CCSD1] gi|256748976|gb|EEU62014.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermoanaerobacter ethanolicus CCSD1] Length = 201 Score = 42.4 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 10/58 (17%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYN 605 A L + GIGP+ +++ F G+ K I E + ++ I K+ +I + Sbjct: 145 ATKEELQTLPGIGPVTAERIIE-FRENKGSFKKI-----EDIMNVPRIGPKMFEQIKD 196 Score = 37.8 bits (86), Expect = 4.9, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%) Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I+ ++ E L ++ GI A +I F +N Sbjct: 141 NINTATKEELQTLPGIGPVTAERIIE-FRENKGS 173 >gi|188586429|ref|YP_001917974.1| PHP domain protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351116|gb|ACB85386.1| PHP domain protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 571 Score = 42.4 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 4/62 (6%) Query: 559 EINGIGPLRKRLLLQSFG--TVKMISRS-SPETLASIEGISKKIACKIYNHFHK-NTSHT 614 I G+G + L G ++ + + + + + G +KI KI K +S Sbjct: 95 GIPGVGVKSAQKLYYQLGISSLNQLKEACEQDQIKELPGFGEKIQEKILQGISKVESSER 154 Query: 615 PT 616 T Sbjct: 155 ET 156 >gi|147678311|ref|YP_001212526.1| DNA polymerase I [Pelotomaculum thermopropionicum SI] gi|146274408|dbj|BAF60157.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Pelotomaculum thermopropionicum SI] Length = 882 Score = 42.4 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 I GIG LL+ +G+++ I + + LA Sbjct: 193 GIPGIGEKTASRLLKEYGSLEEII-AHADELA 223 >gi|146302868|ref|YP_001190184.1| ERCC4 domain-containing protein [Metallosphaera sedula DSM 5348] gi|145701118|gb|ABP94260.1| ERCC4 domain protein [Metallosphaera sedula DSM 5348] Length = 230 Score = 42.4 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 9/70 (12%) Query: 547 KRRKKAAYSPLDE--------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 K + LDE + +G LL F TV+ I SS L + S+K Sbjct: 142 SLHDKPKFESLDEMQLYLVQSLPNVGGKIALRLLTEFSTVRNICNSSIADLERVMK-SRK 200 Query: 599 IACKIYNHFH 608 A +Y F+ Sbjct: 201 KAELLYKIFN 210 >gi|34540958|ref|NP_905437.1| DNA ligase, NAD-dependent [Porphyromonas gingivalis W83] gi|81417286|sp|Q7MV47|DNLJ_PORGI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|34397273|gb|AAQ66336.1| DNA ligase, NAD-dependent [Porphyromonas gingivalis W83] Length = 669 Score = 42.4 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 17/76 (22%) Query: 549 RKKAAYSPLDEIN--------------GI---GPLRKRLLLQSFGTVKMISRSSPETLAS 591 +K+AA LD I GI G + L + ++ ++ ++ E L Sbjct: 488 KKRAAAKLLDSIEASKARPYQAILFGLGIRFVGETVAKKLAAVYPSIDALAAATSEELVQ 547 Query: 592 IEGISKKIACKIYNHF 607 I+ I ++IA + + F Sbjct: 548 IDEIGERIAAAVLHFF 563 >gi|139438245|ref|ZP_01771798.1| Hypothetical protein COLAER_00787 [Collinsella aerofaciens ATCC 25986] gi|133776442|gb|EBA40262.1| Hypothetical protein COLAER_00787 [Collinsella aerofaciens ATCC 25986] Length = 742 Score = 42.4 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 17/35 (48%) Query: 573 QSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + F ++ + +S E +A EGI KIA + Sbjct: 583 ERFLSIDKLILASEEDIAECEGIGPKIAASVKQFL 617 >gi|295838943|ref|ZP_06825876.1| competence protein CelA [Streptomyces sp. SPB74] gi|295827256|gb|EDY42432.2| competence protein CelA [Streptomyces sp. SPB74] Length = 345 Score = 42.4 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 14/57 (24%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNH 606 LD + G+GP+ + +L FG+V + L + GI + ++ + Sbjct: 294 QLDGLPGVGPVLAQRILDHRTAHGGFGSV--------DELREVSGIGARRFAELREY 342 >gi|170076878|ref|YP_001733516.1| exinuclease activity [Synechococcus sp. PCC 7002] gi|169884547|gb|ACA98260.1| conserved hypothetical protein; probable exinuclease activity [Synechococcus sp. PCC 7002] Length = 291 Score = 42.4 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 12/88 (13%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSY---MHSNNHTHRIT-HMISQINN 57 Q+P CP +Y ++D + Y+G+A +L+KR +++ + + + I N Sbjct: 17 DLRQLPNCPAIYFVVDSKNIIQYIGQAKDLEKRWRNHHRKFQLDQINEKYPIRLYWIILN 76 Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFN 85 + T E + I++ KP N Sbjct: 77 LDDLKTA--------EKHFIEKYKPLLN 96 >gi|314933806|ref|ZP_07841171.1| holliday junction DNA helicase RuvA [Staphylococcus caprae C87] gi|313653956|gb|EFS17713.1| holliday junction DNA helicase RuvA [Staphylococcus caprae C87] Length = 200 Score = 42.4 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 5/57 (8%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603 K + L ++ GIGP +L + + + R+ L GI KK A +I Sbjct: 68 KDMFHSLIKVTGIGPKSALAILAA-SSPNGVKRAIENENDAYLTQFPGIGKKTARQI 123 >gi|291614511|ref|YP_003524668.1| competence protein ComEA helix-hairpin-helix repeat protein [Sideroxydans lithotrophicus ES-1] gi|291584623|gb|ADE12281.1| competence protein ComEA helix-hairpin-helix repeat protein [Sideroxydans lithotrophicus ES-1] Length = 153 Score = 42.4 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 9/54 (16%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISR---SSPETLASIEGIS-KKIAC 601 A+ LD + GIGP + + ++ +S E L ++G K +A Sbjct: 27 ASKDELDAVKGIGPAKAQAIIDY-----RTKNGPFASVEDLKHVKGFGDKTVAK 75 >gi|218439363|ref|YP_002377692.1| helicase, RecD/TraA family [Cyanothece sp. PCC 7424] gi|218172091|gb|ACK70824.1| helicase, RecD/TraA family [Cyanothece sp. PCC 7424] Length = 747 Score = 42.4 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 5/50 (10%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKK 598 K S L I G+GP+ R ++ FG T+++I + E L + GI KK Sbjct: 97 KYLGSGL--IKGLGPVMARRIVAHFGLETLEIIENKT-ERLIEVPGIGKK 143 >gi|218441378|ref|YP_002379707.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7424] gi|226725437|sp|B7K970|RUVA_CYAP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|218174106|gb|ACK72839.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7424] Length = 209 Score = 42.4 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 5/57 (8%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKI 603 + + L ING+G L+ + G ++ + + +TL+ G+ K A +I Sbjct: 75 RDLFRQLININGVGTQTAIALIDTLG-IEALINAIVTNDVKTLSKTPGVGPKTAERI 130 >gi|294782071|ref|ZP_06747397.1| DNA polymerase I [Fusobacterium sp. 1_1_41FAA] gi|294480712|gb|EFG28487.1| DNA polymerase I [Fusobacterium sp. 1_1_41FAA] Length = 916 Score = 42.0 bits (97), Expect = 0.26, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 4/49 (8%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 D I G IG + + + +++ I + + L +IEGI + + Sbjct: 190 DGIPGVTKIGEKKALAIFSKYDSLEKIYE-NIDDLKNIEGIGPSLIKNL 237 >gi|255320831|ref|ZP_05362005.1| DNA polymerase I [Acinetobacter radioresistens SK82] gi|262380276|ref|ZP_06073431.1| DNA polymerase I [Acinetobacter radioresistens SH164] gi|255302000|gb|EET81243.1| DNA polymerase I [Acinetobacter radioresistens SK82] gi|262298470|gb|EEY86384.1| DNA polymerase I [Acinetobacter radioresistens SH164] Length = 919 Score = 42.0 bits (97), Expect = 0.26, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 7/49 (14%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + G+G LL +G++ I L ++E I +++ I ++ Sbjct: 187 GVPGVGAKTAAKLLNEYGSLGGI-------LENVEHIKGRVSQSIKDNL 228 >gi|242242867|ref|ZP_04797312.1| competence protein comEA [Staphylococcus epidermidis W23144] gi|242233680|gb|EES35992.1| competence protein comEA [Staphylococcus epidermidis W23144] Length = 220 Score = 42.0 bits (97), Expect = 0.26, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 14/62 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A L I GIGP + + +L F ++ L I+G KK K+ Sbjct: 165 ATEEQLKNIPGIGPSKAKDILNYREKNNGFNSIN--------DLMKIKGFGKKTFEKLKE 216 Query: 606 HF 607 HF Sbjct: 217 HF 218 >gi|193213809|ref|YP_001995008.1| NAD-dependentDNA ligase [Chloroherpeton thalassium ATCC 35110] gi|254781288|sp|B3QSH0|DNLJ_CHLT3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|193087286|gb|ACF12561.1| DNA ligase, NAD-dependent [Chloroherpeton thalassium ATCC 35110] Length = 684 Score = 42.0 bits (97), Expect = 0.26, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 18/45 (40%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G +L F ++ I +S L E I + IA + F Sbjct: 531 VGRRTASILADRFTSLDTIKSASQAELCETEEIGETIAKSVALFF 575 >gi|223936891|ref|ZP_03628800.1| DNA ligase, NAD-dependent [bacterium Ellin514] gi|223894460|gb|EEF60912.1| DNA ligase, NAD-dependent [bacterium Ellin514] Length = 680 Score = 42.0 bits (97), Expect = 0.26, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 +G + L + F T+ I +S E L +E I + IA I H+ + Sbjct: 528 VGAGVAKRLGRRFTTLDDIFAASQEQLTEVEDIGEVIAHSIVQW-HQEPKN 577 >gi|168185943|ref|ZP_02620578.1| helicase, RecD/TraA family [Clostridium botulinum C str. Eklund] gi|169296129|gb|EDS78262.1| helicase, RecD/TraA family [Clostridium botulinum C str. Eklund] Length = 735 Score = 42.0 bits (97), Expect = 0.26, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603 I+GIGP+ + +++ FG T+ I E L I+GI K I Sbjct: 88 ISGIGPVTAQKIVEYFGEKTLD-ILDEDIEKLKEIDGIGTKKVETI 132 >gi|110668724|ref|YP_658535.1| 50S ribosomal protein L32e [Haloquadratum walsbyi DSM 16790] gi|109626471|emb|CAJ52932.1| ribosomal protein L32.eR [Haloquadratum walsbyi DSM 16790] Length = 317 Score = 42.0 bits (97), Expect = 0.26, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 558 DEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605 ++I+G+G R L ++ + + + I +S LA ++ I +A +I Sbjct: 78 EDISGVGSDRAESLREAGYDSFEDIRAASQSALADVDDIGNALAARIKA 126 >gi|312134462|ref|YP_004001800.1| DNA repair protein radc [Caldicellulosiruptor owensensis OL] gi|311774513|gb|ADQ04000.1| DNA repair protein RadC [Caldicellulosiruptor owensensis OL] Length = 230 Score = 42.0 bits (97), Expect = 0.27, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 18/34 (52%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 L+ +FG++ + + PE L + GI K A I Sbjct: 50 RLISTFGSISNVFEAHPEDLQKVNGIGKNSAILI 83 >gi|303234611|ref|ZP_07321245.1| helicase, RecD/TraA family [Finegoldia magna BVS033A4] gi|302494274|gb|EFL54046.1| helicase, RecD/TraA family [Finegoldia magna BVS033A4] Length = 743 Score = 42.0 bits (97), Expect = 0.27, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 5/59 (8%) Query: 553 AYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 S L I GIG R +++ FG T++++ SP L ++GI KK KI + Sbjct: 82 LQSGL--IKGIGETTARRIVEEFGEDTMEILKN-SPSKLLQVKGIGKKNYKKIKESLDE 137 >gi|297587888|ref|ZP_06946532.1| RecD/TraA family helicase [Finegoldia magna ATCC 53516] gi|297574577|gb|EFH93297.1| RecD/TraA family helicase [Finegoldia magna ATCC 53516] Length = 743 Score = 42.0 bits (97), Expect = 0.27, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 5/59 (8%) Query: 553 AYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 S L I GIG R +++ FG T++++ SP L ++GI KK KI + Sbjct: 82 LQSGL--IKGIGETTARRIVEEFGEDTMEILKN-SPSKLLQVKGIGKKNYKKIKESLDE 137 >gi|169825196|ref|YP_001692807.1| ATP-dependent exodeoxyribonuclease subunit alpha [Finegoldia magna ATCC 29328] gi|167832001|dbj|BAG08917.1| ATP-dependent exodeoxyribonuclease alpha subunit [Finegoldia magna ATCC 29328] Length = 743 Score = 42.0 bits (97), Expect = 0.27, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 5/59 (8%) Query: 553 AYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 S L I GIG R +++ FG T++++ SP L ++GI KK KI + Sbjct: 82 LQSGL--IKGIGETTARRIVEEFGEDTMEILKN-SPSKLLQVKGIGKKNYKKIKESLDE 137 >gi|163781568|ref|ZP_02176568.1| hypothetical protein HG1285_01758 [Hydrogenivirga sp. 128-5-R1-1] gi|159882788|gb|EDP76292.1| hypothetical protein HG1285_01758 [Hydrogenivirga sp. 128-5-R1-1] Length = 336 Score = 42.0 bits (97), Expect = 0.27, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 7/52 (13%) Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA-------CKIYN 605 G+G + L ++FG + I + + L G S+ A K+Y Sbjct: 14 KGVGEITLYRLYKTFGGAENILSADYKDLKGCVGESRARAILSGDFDEKVYE 65 >gi|189502567|ref|YP_001958284.1| hypothetical protein Aasi_1230 [Candidatus Amoebophilus asiaticus 5a2] gi|189498008|gb|ACE06555.1| hypothetical protein Aasi_1230 [Candidatus Amoebophilus asiaticus 5a2] Length = 374 Score = 42.0 bits (97), Expect = 0.27, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA-SIEGISKKIACKIYN 605 L I GIG + +++ F T + I ++S +L ++ GI I I Sbjct: 11 ALSLIKGIGFNTWKRIIEKFKTAQAIFQASKTSLTGNLPGIPLSIIQAILA 61 >gi|116621518|ref|YP_823674.1| DNA protecting protein DprA [Candidatus Solibacter usitatus Ellin6076] gi|116224680|gb|ABJ83389.1| DNA protecting protein DprA [Candidatus Solibacter usitatus Ellin6076] Length = 391 Score = 42.0 bits (97), Expect = 0.27, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 L + G+G LL F T + I R+S L + G+S +A + Sbjct: 16 ALKLVPGLGARTSGKLLDRFRTPQAIFRASRTELEAA-GLSGAVAQSV 62 >gi|297621459|ref|YP_003709596.1| DNA repair protein radC family [Waddlia chondrophila WSU 86-1044] gi|297376760|gb|ADI38590.1| DNA repair protein radC family [Waddlia chondrophila WSU 86-1044] Length = 231 Score = 42.0 bits (97), Expect = 0.27, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 20/39 (51%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + L+ FG ++ ++ ++ E L + G+ A K+ F Sbjct: 48 KELIARFGGLRHLADATIEELLQMRGVGTAQAIKLKAAF 86 >gi|110833810|ref|YP_692669.1| NAD-dependent DNA ligase LigA [Alcanivorax borkumensis SK2] gi|123345666|sp|Q0VR01|DNLJ_ALCBS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|110646921|emb|CAL16397.1| DNA ligase (NAD+) [Alcanivorax borkumensis SK2] Length = 777 Score = 42.0 bits (97), Expect = 0.27, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 21/52 (40%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 IG + L FG + I + L ++ + ++A I F ++ + Sbjct: 523 IGEETAKNLADCFGDLDSIRHAPLLLLLAVPDVGLEVAKAIGAFFAESDNEA 574 >gi|332527517|ref|ZP_08403569.1| Holliday junction DNA helicase RuvA [Rubrivivax benzoatilyticus JA2] gi|332111924|gb|EGJ11902.1| Holliday junction DNA helicase RuvA [Rubrivivax benzoatilyticus JA2] Length = 192 Score = 42.0 bits (97), Expect = 0.27, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 7/63 (11%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRSSPET----LASIEGISKKIACKIYN 605 +A + L +I+G+GP LL G +V +S++ L + GI KK A ++ Sbjct: 69 RATFRLLVKISGVGPRMALALLS--GLSVAELSQAVAAQDGARLVKVPGIGKKTAERVLL 126 Query: 606 HFH 608 Sbjct: 127 ELK 129 >gi|197294788|ref|YP_001799329.1| NAD-dependent DNA ligase [Candidatus Phytoplasma australiense] gi|254781387|sp|B1VAY1|DNLJ_PHYAS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|171854115|emb|CAM12104.1| NAD-dependent DNA ligase [Candidatus Phytoplasma australiense] Length = 670 Score = 42.0 bits (97), Expect = 0.27, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 5/68 (7%) Query: 547 KRRKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETL---ASIEGISKKIAC 601 K + K+ + L I +G ++L + F +++++ +++ E L SI I +KIA Sbjct: 498 KSKNKSLENVLFGLGIKHVGLKVSQVLTKHFDSIEILQKTTLENLESIKSIPEIGEKIAL 557 Query: 602 KIYNHFHK 609 + +F Sbjct: 558 SLQKYFQN 565 >gi|147669902|ref|YP_001214720.1| DNA repair protein RadC [Dehalococcoides sp. BAV1] gi|146270850|gb|ABQ17842.1| DNA repair protein RadC [Dehalococcoides sp. BAV1] Length = 272 Score = 42.0 bits (97), Expect = 0.27, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 16/71 (22%) Query: 542 ITTHRKR-RKKAAYSPLDEING---------IGPLRK------RLLLQSFGTVKMISRSS 585 HR+R R++ + LD +N +G R+ + +++FG+++ + +S Sbjct: 20 NEGHRQRLRERFLKAGLDGLNDYEVVELLLTLGTPRRDCKQAAKEAIKNFGSLRAVLEAS 79 Query: 586 PETLASIEGIS 596 PE L+ I+GI Sbjct: 80 PEELSGIKGIG 90 >gi|332799127|ref|YP_004460626.1| Holliday junction ATP-dependent DNA helicase ruvA [Tepidanaerobacter sp. Re1] gi|332696862|gb|AEE91319.1| Holliday junction ATP-dependent DNA helicase ruvA [Tepidanaerobacter sp. Re1] Length = 193 Score = 42.0 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 7/64 (10%) Query: 557 LDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 L++++GIGP +L T I + L + GI KK A KI Sbjct: 76 LNKVSGIGPKAAISILSLMDVARLKT--SILSEDVKDLVKVPGIGKKTAQKIIIELKDRI 133 Query: 612 SHTP 615 P Sbjct: 134 KDLP 137 >gi|329767086|ref|ZP_08258614.1| Holliday junction DNA helicase RuvA [Gemella haemolysans M341] gi|328837811|gb|EGF87436.1| Holliday junction DNA helicase RuvA [Gemella haemolysans M341] Length = 193 Score = 42.0 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 28/82 (34%), Gaps = 14/82 (17%) Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGT-----VKMISRSSPETLASIEGISKKIAC 601 + +K + L ++ G+GP +L G + I L GI KK A Sbjct: 62 NKDQKKVFLLLLKVKGVGPKSALAILA--GGTSEEIIGAIENQDVNYLTKFPGIGKKSAQ 119 Query: 602 KIYNHFHK-------NTSHTPT 616 +I N S PT Sbjct: 120 QIILDLQGKVDFSMTNISSAPT 141 >gi|325977951|ref|YP_004287667.1| NAD-dependent DNA ligase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177879|emb|CBZ47923.1| NAD-dependent DNA ligase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 652 Score = 42.0 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 29/54 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G R LL+ F T+ + + +++ASI+G+ IA + ++F K + Sbjct: 502 GIRHVGAKASRQLLEVFETIDQLVAADADSIASIDGLGTVIANSLRSYFAKKEA 555 Score = 41.6 bits (96), Expect = 0.35, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 6/54 (11%) Query: 559 EINGIGPLRKRLLLQ----SFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I G+GP + L + V I + + E L S++G +K A K+YN Sbjct: 436 NITGLGPSIVKKLFKAELVH--DVADIYQLTVEDLLSLDGFKEKSAEKLYNAIQ 487 >gi|320546461|ref|ZP_08040776.1| NAD-dependent DNA ligase LigA [Streptococcus equinus ATCC 9812] gi|320448846|gb|EFW89574.1| NAD-dependent DNA ligase LigA [Streptococcus equinus ATCC 9812] Length = 652 Score = 42.0 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 29/54 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G R LL+ F T+ + + +++ASI+G+ IA + ++F K + Sbjct: 502 GIRHVGAKASRQLLEVFETIDQLVAADADSIASIDGLGTVIANSLRSYFAKKEA 555 Score = 41.6 bits (96), Expect = 0.35, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 6/54 (11%) Query: 559 EINGIGPLRKRLLLQ----SFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I G+GP + L + V I + + E L S++G +K A K+YN Sbjct: 436 NITGLGPSIVKKLFKAELVH--DVADIYQLTVEDLLSLDGFKEKSAEKLYNAIQ 487 >gi|306831054|ref|ZP_07464215.1| NAD-dependent DNA ligase LigA [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426620|gb|EFM29731.1| NAD-dependent DNA ligase LigA [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 652 Score = 42.0 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 29/54 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G R LL+ F T+ + + +++ASI+G+ IA + ++F K + Sbjct: 502 GIRHVGAKASRQLLEVFETIDQLVAADADSIASIDGLGTVIANSLRSYFAKKEA 555 Score = 41.6 bits (96), Expect = 0.35, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 6/54 (11%) Query: 559 EINGIGPLRKRLLLQ----SFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I G+GP + L + V I + + E L S++G +K A K+YN Sbjct: 436 NITGLGPSIVKKLFKAELVH--DVADIYQLTVEDLLSLDGFKEKSAEKLYNAIQ 487 >gi|302380431|ref|ZP_07268899.1| helicase, RecD/TraA family [Finegoldia magna ACS-171-V-Col3] gi|302311742|gb|EFK93755.1| helicase, RecD/TraA family [Finegoldia magna ACS-171-V-Col3] Length = 743 Score = 42.0 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 5/59 (8%) Query: 553 AYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 S L I GIG R +++ FG T++++ SP L ++GI KK KI + Sbjct: 82 LQSGL--IKGIGETTARRIVEEFGEDTMEILKN-SPSKLLQVKGIGKKNYKKIKESLDE 137 >gi|288904984|ref|YP_003430206.1| DNA ligase (NAD-dependent) [Streptococcus gallolyticus UCN34] gi|288731710|emb|CBI13271.1| DNA ligase (NAD-dependent) [Streptococcus gallolyticus UCN34] Length = 652 Score = 42.0 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 29/54 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G R LL+ F T+ + + +++ASI+G+ IA + ++F K + Sbjct: 502 GIRHVGAKASRQLLEVFETIDQLVAADADSIASIDGLGTVIANSLRSYFAKKEA 555 Score = 41.6 bits (96), Expect = 0.35, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 6/54 (11%) Query: 559 EINGIGPLRKRLLLQ----SFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I G+GP + L + V I + + E L S++G +K A K+YN Sbjct: 436 NITGLGPSIVKKLFKVELVH--DVADIYQLTVEDLLSLDGFKEKSAEKLYNAIQ 487 >gi|255656481|ref|ZP_05401890.1| putative competence protein [Clostridium difficile QCD-23m63] Length = 222 Score = 42.0 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 LD + G+G +LQ F ++ E + ++ GI K I + Sbjct: 170 ELDSLPGVGEATANKILQHREENGQFSSI--------EEIKNVNGIGDKKYENIKD 217 >gi|197284032|ref|YP_002149904.1| competence protein [Proteus mirabilis HI4320] gi|227358097|ref|ZP_03842439.1| competence protein ComEA helix-hairpin-helix repeat protein [Proteus mirabilis ATCC 29906] gi|194681519|emb|CAR40406.1| putative competence protein [Proteus mirabilis HI4320] gi|227161832|gb|EEI46864.1| competence protein ComEA helix-hairpin-helix repeat protein [Proteus mirabilis ATCC 29906] Length = 124 Score = 42.0 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 4/52 (7%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMI-SRSSPETLASIEGISKKIACK 602 A L + GIG + + ++ + + +S + LA + GI K+ + Sbjct: 68 ATLDELMTLKGIGKAKAQAIIDY---REKVGRFASFDDLAKVFGIGMKLIEQ 116 Score = 38.5 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 7/26 (26%), Positives = 16/26 (61%) Query: 581 ISRSSPETLASIEGISKKIACKIYNH 606 I+ ++ + L +++GI K A I ++ Sbjct: 65 INSATLDELMTLKGIGKAKAQAIIDY 90 >gi|73749140|ref|YP_308379.1| RadC family DNA repair protein [Dehalococcoides sp. CBDB1] gi|289433114|ref|YP_003462987.1| DNA repair protein RadC [Dehalococcoides sp. GT] gi|73660856|emb|CAI83463.1| DNA repair protein, RadC family [Dehalococcoides sp. CBDB1] gi|288946834|gb|ADC74531.1| DNA repair protein RadC [Dehalococcoides sp. GT] Length = 272 Score = 42.0 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 16/71 (22%) Query: 542 ITTHRKR-RKKAAYSPLDEING---------IGPLRK------RLLLQSFGTVKMISRSS 585 HR+R R++ + LD +N +G R+ + +++FG+++ + +S Sbjct: 20 NEGHRQRLRERFLKAGLDGLNDYEVVELLLTLGTPRRDCKQAAKEAIKNFGSLRAVLEAS 79 Query: 586 PETLASIEGIS 596 PE L+ I+GI Sbjct: 80 PEELSGIKGIG 90 >gi|227822641|ref|YP_002826613.1| NAD-dependent DNA ligase LigA [Sinorhizobium fredii NGR234] gi|254781400|sp|C3MEL9|DNLJ_RHISN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|227341642|gb|ACP25860.1| DNA ligase [Sinorhizobium fredii NGR234] Length = 717 Score = 42.0 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 42/104 (40%) Query: 548 RRKKAAYSPLDEING--------------------------------IGPLRKRLLLQSF 575 RR++A+ + L+ I G +G +LL +S+ Sbjct: 512 RRQEASLTKLENIEGFGKVSVRKLYEAINARREIALHRFIYALGIRHVGETTAKLLARSY 571 Query: 576 GTVKMISRSSPE----------TLASIEGISKKIACKIYNHFHK 609 GT + + + L SIEGI + +A I + + Sbjct: 572 GTYEHFRAAMVDAGSLAGDAWNELNSIEGIGEVVARAIVEFYKE 615 >gi|187929782|ref|YP_001900269.1| DNA repair protein RadC [Ralstonia pickettii 12J] gi|238691809|sp|B2UAP0|Y2712_RALPJ RecName: Full=UPF0758 protein Rpic_2712 gi|187726672|gb|ACD27837.1| DNA repair protein RadC [Ralstonia pickettii 12J] Length = 224 Score = 42.0 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 4/40 (10%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 R LL FG++ + +S + +SI G+ Y H Sbjct: 48 RELLAHFGSLARLCHASQQEFSSINGMGPAK----YAQLH 83 >gi|38233671|ref|NP_939438.1| NAD-dependent DNA ligase LigA [Corynebacterium diphtheriae NCTC 13129] gi|81401524|sp|Q6NHQ4|DNLJ_CORDI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|38199932|emb|CAE49600.1| DNA ligase [Corynebacterium diphtheriae] Length = 677 Score = 42.0 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 4/56 (7%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF----HKN 610 I +GP R L + +++ + + E +A+ EG+ IA F H+N Sbjct: 522 SIRHVGPTAARALAVRYRSLEALRAADVEDIANTEGVGAIIAQSFAQWFDVPWHRN 577 >gi|303327272|ref|ZP_07357714.1| DNA repair protein RadC [Desulfovibrio sp. 3_1_syn3] gi|302863260|gb|EFL86192.1| DNA repair protein RadC [Desulfovibrio sp. 3_1_syn3] Length = 230 Score = 42.0 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 6/50 (12%) Query: 556 PLDEINGIGPLRK------RLLLQSFGTVKMISRSSPETLASIEGISKKI 599 L+ + G G RK + LL+ FG+++ + P+ L + G + Sbjct: 35 VLELLLGYGLTRKDTKPLAKELLRRFGSIRGALDARPDELLQVPGFGPGL 84 >gi|288801242|ref|ZP_06406697.1| DNA ligase, NAD-dependent [Prevotella sp. oral taxon 299 str. F0039] gi|288331853|gb|EFC70336.1| DNA ligase, NAD-dependent [Prevotella sp. oral taxon 299 str. F0039] Length = 666 Score = 42.0 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 21/50 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G RLL + F + + ++ L +EG+ IA + F + Sbjct: 516 VGETSARLLARKFNDINSLRNATAAQLLEVEGVGDIIATSVVTFFSDEKN 565 >gi|171778643|ref|ZP_02919739.1| hypothetical protein STRINF_00591 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282600|gb|EDT48024.1| hypothetical protein STRINF_00591 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 226 Score = 42.0 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 12/58 (20%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIY 604 A L I+GIG R + ++ + S + L +I GI +K K+ Sbjct: 170 ATTEELQTISGIGAKRAQDIIDY-------RDANGGFSSVDDLKNISGIGEKTLEKLK 220 >gi|145502396|ref|XP_001437176.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124404325|emb|CAK69779.1| unnamed protein product [Paramecium tetraurelia] Length = 836 Score = 42.0 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 27/292 (9%), Positives = 72/292 (24%), Gaps = 18/292 (6%) Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185 + + N + ++ ++ + CL+ + +C G E + + Sbjct: 52 PNTRQCVEMCNCKDLVSLQNNDCNNCIQNCSSECLVCILDKCYACLEGWQLIEHKCQQIC 111 Query: 186 -------EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238 + + GN+ +++ + Q + + L S+ + + Sbjct: 112 GDNQVALTSNEQCDDGNYFIEDGCNECLFQCGPYCQF--CNKELNCLICESNFKLVHHLC 169 Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST-NAQILSYFLRQFYTDK 297 + + G + Q + +F K Sbjct: 170 APICGDKIVISGLEECDDGNDIKYDGCFECQFQCNFGCKICESGKCQDVCKVDEEFINGK 229 Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN--------AH 349 P ++ SEE + + + + + N Sbjct: 230 CIPIVLIKSEEIDPNQSECKNHCLVCDGANCLRCKQDYILENNKCFSCGNGIITKDEECE 289 Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVV 401 + + I +D+ +L + + I S + S V Sbjct: 290 DGNRINSDGCSNQCKIEEDWNCIDSLSFLSQCFPIAKISIVFLNSTFNTQYV 341 >gi|315187558|gb|EFU21314.1| DNA polymerase I [Spirochaeta thermophila DSM 6578] Length = 897 Score = 42.0 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 6/45 (13%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 D I G IG R LL +G+++ + + + L+ + KK+ Sbjct: 187 DNIPGVEGIGEKTARRLLAEYGSLEGVY-AHLDELS--PSLRKKL 228 >gi|329299043|ref|NP_001192289.1| excision repair cross-complementing rodent repair deficiency, complementation group 4 [Bos taurus] gi|296473370|gb|DAA15485.1| excision repair cross-complementing rodent repair deficiency, complementation group 4 [Bos taurus] Length = 916 Score = 42.0 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 L ++ GI R L+ + ++ + LAS+ G + A ++Y+ H + + Sbjct: 852 LLKMPGINAKNCRSLMNHVKNIAELASLPFDELASMLG-NTASARQLYDFIHTSYAE 907 >gi|262374328|ref|ZP_06067604.1| DNA polymerase I [Acinetobacter junii SH205] gi|262310886|gb|EEY91974.1| DNA polymerase I [Acinetobacter junii SH205] Length = 921 Score = 42.0 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 23/49 (46%), Gaps = 7/49 (14%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + G+G LL +G++ I +A+++ + K++ I ++ Sbjct: 187 GVPGVGAKTAAKLLTEYGSLNNI-------IANVDQLKGKLSQNIKDNL 228 >gi|254458916|ref|ZP_05072339.1| DNA ligase, NAD-dependent [Campylobacterales bacterium GD 1] gi|207084187|gb|EDZ61476.1| DNA ligase, NAD-dependent [Campylobacterales bacterium GD 1] Length = 653 Score = 42.0 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 11/80 (13%), Positives = 34/80 (42%), Gaps = 16/80 (20%) Query: 541 AITTHRKRRKKAAYSPLD--------------EINGIGPLRKRLLLQSFGTVKMISRSSP 586 A+ ++++ + + L+ I +G + + L ++FG+ ++ Sbjct: 471 ALEGFKEKKSQNLLNSLEAAKGCDYWRFINSLGIEHVGEVASKTLSENFGS--SFIDATK 528 Query: 587 ETLASIEGISKKIACKIYNH 606 E + + +GI +++A + Sbjct: 529 EEIVACDGIGEEMAESVLEF 548 >gi|46447394|ref|YP_008759.1| NAD-dependent DNA ligase LigA [Candidatus Protochlamydia amoebophila UWE25] gi|81626502|sp|Q6MAB5|DNLJ_PARUW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|46401035|emb|CAF24484.1| probable DNA ligase [Candidatus Protochlamydia amoebophila UWE25] Length = 665 Score = 42.0 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 25/51 (49%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 EI IG LL GT++ + + + E L IEG+ K+A + HF Sbjct: 513 EIKYIGIGTAELLAARAGTIETLMQLNEEDLIKIEGVGGKVAQAVVEHFQN 563 >gi|311993224|ref|YP_004010090.1| endonuclease II [Enterobacteria phage CC31] gi|284178062|gb|ADB81728.1| endonuclease II [Enterobacteria phage CC31] Length = 137 Score = 42.0 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 22/96 (22%) Query: 19 AGRVLYVGKAYNLQKRIKSY---------MHSNNHTHRI--THMISQINNIRFTVT---- 63 ++Y+GK NL+KRI Y + + +I M + + Sbjct: 42 DDELVYIGKTKNLRKRINYYRTAINRKDQTSDSTKSAKIYDALMSGKTVSFYARQCFNLL 101 Query: 64 -CTEVEAL------LLEANMIKRLKPRFNILLRDDK 92 E+ + L E IK+ P +N + K Sbjct: 102 INNELGEMSISTMDLEEPMFIKKFNPPWNTQHKGKK 137 >gi|284097329|ref|ZP_06385461.1| UvrABC system protein C [Candidatus Poribacteria sp. WGA-A3] gi|283831159|gb|EFC35137.1| UvrABC system protein C [Candidatus Poribacteria sp. WGA-A3] Length = 110 Score = 42.0 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 36/84 (42%) Query: 155 RTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKED 214 R C + +KRC PC I+ E+Y E + + L G ++ + ++A+ + Sbjct: 25 GFRACFQYDLKRCDAPCAALITRERYGEMITDIVNLLDGEYEEVQTSLVAKRDRASEALE 84 Query: 215 YESAIIHRDRLAALSHIQNHNDSI 238 +E A + +L + + D Sbjct: 85 FERAASFQKQLQRIQKVFTFLDVH 108 >gi|317128494|ref|YP_004094776.1| hypothetical protein Bcell_1783 [Bacillus cellulosilyticus DSM 2522] gi|315473442|gb|ADU30045.1| hypothetical protein Bcell_1783 [Bacillus cellulosilyticus DSM 2522] Length = 398 Score = 42.0 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 3/52 (5%) Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNH 606 PL I G GP LL FG + ++ + E L + + IA I Sbjct: 330 PLQFIRGCGPKTLDKLLSHFGNEMVVLHEAPVEDLKKV--VPSNIANNIIKA 379 >gi|257469719|ref|ZP_05633811.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185] gi|317063951|ref|ZP_07928436.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185] gi|313689627|gb|EFS26462.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185] Length = 908 Score = 42.0 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 5/50 (10%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI-ACKI 603 D I G IGP + +L+ +G ++ + + + L I GI K + A I Sbjct: 190 DGIPGVRKIGPKKAAPMLEKYGDLEGVYE-NIDKLTEIPGIGKSLIANMI 238 >gi|253826950|ref|ZP_04869835.1| hypothetical protein HCAN_0297 [Helicobacter canadensis MIT 98-5491] gi|253510356|gb|EES89015.1| hypothetical protein HCAN_0297 [Helicobacter canadensis MIT 98-5491] Length = 82 Score = 42.0 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 13/62 (20%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQS-----FGTVKMISRSSPETLASIEGISKKIACKIYN 605 KA L I GIG + + ++ F ++ + L +++G K KI Sbjct: 22 KANKEELMSIKGIGEAKAQAIIDYREKTPFKSI--------DDLKNVKGFGSKSIQKIRK 73 Query: 606 HF 607 Sbjct: 74 DL 75 >gi|83858758|ref|ZP_00952280.1| DNA repair protein [Oceanicaulis alexandrii HTCC2633] gi|83853581|gb|EAP91433.1| DNA repair protein [Oceanicaulis alexandrii HTCC2633] Length = 213 Score = 42.0 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 + L+ FG + + + L ++G+S+K A Sbjct: 37 KALIARFGGLGGVCAADLHQLKEVKGVSEKTA 68 >gi|325205349|gb|ADZ00802.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis M04-240196] Length = 194 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 15/94 (15%) Query: 518 LVLNMRDPILYFIQR--LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLL 572 L + + +R++AH FA RK + L +++GIG +L Sbjct: 36 YNLPPVGESVQLFTQLIIREDAHLLFGFATAEERK-----TFRQLIKVSGIGAKTALGIL 90 Query: 573 QSFGTVKMISRSSPET----LASIEGISKKIACK 602 + T ++++ E L+S GI KK A + Sbjct: 91 SAM-TADELAQAVAEEDVKRLSSAPGIGKKTAER 123 >gi|325203753|gb|ADY99206.1| DNA ligase, NAD-dependent [Neisseria meningitidis M01-240355] Length = 841 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FGT++ + R+ LA + I +A I + F + Sbjct: 606 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 661 >gi|325197886|gb|ADY93342.1| DNA ligase, NAD-dependent [Neisseria meningitidis G2136] Length = 841 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FGT++ + R+ LA + I +A I + F + Sbjct: 606 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 661 >gi|325141882|gb|EGC64324.1| DNA ligase, NAD-dependent [Neisseria meningitidis 961-5945] Length = 841 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FGT++ + R+ LA + I +A I + F + Sbjct: 606 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 661 >gi|325137931|gb|EGC60506.1| DNA ligase, NAD-dependent [Neisseria meningitidis ES14902] Length = 841 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FGT++ + R+ LA + I +A I + F + Sbjct: 606 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 661 >gi|325131881|gb|EGC54581.1| DNA ligase, NAD-dependent [Neisseria meningitidis M6190] Length = 841 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FGT++ + R+ LA + I +A I + F + Sbjct: 606 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 661 >gi|325128974|gb|EGC51825.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis N1568] Length = 194 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 15/94 (15%) Query: 518 LVLNMRDPILYFIQR--LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLL 572 L + + +R++AH FA RK + L +++GIG +L Sbjct: 36 YNLPPVGESVQLFTQLIIREDAHLLFGFATAEERK-----TFRQLIKVSGIGAKTALGIL 90 Query: 573 QSFGTVKMISRSSPET----LASIEGISKKIACK 602 + T ++++ E L+S GI KK A + Sbjct: 91 SAM-TADELAQAVAEEDVKRLSSAPGIGKKTAER 123 >gi|325127826|gb|EGC50734.1| DNA ligase, NAD-dependent [Neisseria meningitidis N1568] Length = 841 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FGT++ + R+ LA + I +A I + F + Sbjct: 606 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 661 >gi|320160780|ref|YP_004174004.1| Holliday junction ATP-dependent DNA helicase RuvA [Anaerolinea thermophila UNI-1] gi|319994633|dbj|BAJ63404.1| Holliday junction ATP-dependent DNA helicase RuvA [Anaerolinea thermophila UNI-1] Length = 191 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 5/56 (8%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKIYNHFH 608 L +NGIGP +L +V I R+ L+ + G+ +K A KI Sbjct: 74 LLGVNGIGPRLAISILSVL-SVDAIRRAILSEQPEVLSRVPGVGRKNAQKIILSLQ 128 >gi|304389092|ref|ZP_07371136.1| crossover junction ATP-dependent DNA helicase RuvA [Neisseria meningitidis ATCC 13091] gi|304336965|gb|EFM03155.1| crossover junction ATP-dependent DNA helicase RuvA [Neisseria meningitidis ATCC 13091] Length = 194 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 15/94 (15%) Query: 518 LVLNMRDPILYFIQR--LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLL 572 L + + +R++AH FA RK + L +++GIG +L Sbjct: 36 YNLPPVGESVQLFTQLIIREDAHLLFGFATAEERK-----TFRQLIKVSGIGAKTALGIL 90 Query: 573 QSFGTVKMISRSSPET----LASIEGISKKIACK 602 + T ++++ E L+S GI KK A + Sbjct: 91 SAM-TADELAQAVAEEDVKRLSSAPGIGKKTAER 123 >gi|299533018|ref|ZP_07046405.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni S44] gi|298719242|gb|EFI60212.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni S44] Length = 191 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 7/65 (10%) Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACKI 603 R++ + L +I GIGP +L G ++ ++ + S + L + GI KK A ++ Sbjct: 67 RERQTFRELIKITGIGPRMALAVLS--GMSIDDLADAVSQQQAGRLVKVPGIGKKTAERL 124 Query: 604 YNHFH 608 Sbjct: 125 LLELK 129 >gi|296313720|ref|ZP_06863661.1| holliday junction DNA helicase RuvA [Neisseria polysaccharea ATCC 43768] gi|296839643|gb|EFH23581.1| holliday junction DNA helicase RuvA [Neisseria polysaccharea ATCC 43768] Length = 194 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 15/94 (15%) Query: 518 LVLNMRDPILYFIQR--LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLL 572 L + + +R++AH FA RK + L +++GIG +L Sbjct: 36 YNLPPVGESVQLFTQLIIREDAHLLFGFATAEERK-----TFRQLIKVSGIGAKTALGIL 90 Query: 573 QSFGTVKMISRSSPET----LASIEGISKKIACK 602 + T ++++ E L+S GI KK A + Sbjct: 91 SAM-TADELAQAVAEEDVKRLSSAPGIGKKTAER 123 >gi|268681538|ref|ZP_06148400.1| DNA ligase [Neisseria gonorrhoeae PID332] gi|268621822|gb|EEZ54222.1| DNA ligase [Neisseria gonorrhoeae PID332] Length = 829 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FGT++ + R+ LA + I +A I + F + Sbjct: 594 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 649 >gi|268600753|ref|ZP_06134920.1| DNA ligase [Neisseria gonorrhoeae PID18] gi|268683767|ref|ZP_06150629.1| DNA ligase [Neisseria gonorrhoeae SK-92-679] gi|268686007|ref|ZP_06152869.1| DNA ligase [Neisseria gonorrhoeae SK-93-1035] gi|293399617|ref|ZP_06643770.1| DNA ligase, NAD-dependent [Neisseria gonorrhoeae F62] gi|268584884|gb|EEZ49560.1| DNA ligase [Neisseria gonorrhoeae PID18] gi|268624051|gb|EEZ56451.1| DNA ligase [Neisseria gonorrhoeae SK-92-679] gi|268626291|gb|EEZ58691.1| DNA ligase [Neisseria gonorrhoeae SK-93-1035] gi|291610186|gb|EFF39308.1| DNA ligase, NAD-dependent [Neisseria gonorrhoeae F62] Length = 829 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FGT++ + R+ LA + I +A I + F + Sbjct: 594 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 649 >gi|268596277|ref|ZP_06130444.1| DNA ligase [Neisseria gonorrhoeae FA19] gi|268603059|ref|ZP_06137226.1| DNA ligase [Neisseria gonorrhoeae PID1] gi|291044437|ref|ZP_06570146.1| DNA ligase [Neisseria gonorrhoeae DGI2] gi|268550065|gb|EEZ45084.1| DNA ligase [Neisseria gonorrhoeae FA19] gi|268587190|gb|EEZ51866.1| DNA ligase [Neisseria gonorrhoeae PID1] gi|291011331|gb|EFE03327.1| DNA ligase [Neisseria gonorrhoeae DGI2] Length = 829 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FGT++ + R+ LA + I +A I + F + Sbjct: 594 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 649 >gi|268594283|ref|ZP_06128450.1| DNA ligase [Neisseria gonorrhoeae 35/02] gi|268547672|gb|EEZ43090.1| DNA ligase [Neisseria gonorrhoeae 35/02] Length = 827 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FGT++ + R+ LA + I +A I + F + Sbjct: 592 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 647 >gi|264680422|ref|YP_003280332.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni CNB-2] gi|262210938|gb|ACY35036.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni CNB-2] Length = 191 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 7/65 (10%) Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACKI 603 R++ + L +I GIGP +L G ++ ++ + S + L + GI KK A ++ Sbjct: 67 RERQTFRELIKITGIGPRMALAVLS--GMSIDDLADAVSQQQAGRLVKVPGIGKKTAERL 124 Query: 604 YNHFH 608 Sbjct: 125 LLELK 129 >gi|254674127|emb|CBA09911.1| holliday junction DNA helicase [Neisseria meningitidis alpha275] gi|325145258|gb|EGC67537.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis M01-240013] Length = 194 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 15/94 (15%) Query: 518 LVLNMRDPILYFIQR--LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLL 572 L + + +R++AH FA RK + L +++GIG +L Sbjct: 36 YNLPPVGESVQLFTQLIIREDAHLLFGFATAEERK-----TFRQLIKVSGIGAKTALGIL 90 Query: 573 QSFGTVKMISRSSPET----LASIEGISKKIACK 602 + T ++++ E L+S GI KK A + Sbjct: 91 SAM-TADELAQAVAEEDVKRLSSAPGIGKKTAER 123 >gi|254673677|emb|CBA09272.1| DNA ligase [Neisseria meningitidis alpha275] Length = 414 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FGT++ + R+ LA + I +A I + F + Sbjct: 179 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 234 >gi|253997895|ref|YP_003049958.1| DNA protecting protein DprA [Methylovorus sp. SIP3-4] gi|253984574|gb|ACT49431.1| DNA protecting protein DprA [Methylovorus sp. SIP3-4] Length = 371 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 L + G+G R LL+ FG+ + I + + L + + + +A I Sbjct: 16 ALSLVPGLGGQRICQLLKVFGSPEQIFAAPHDALRQV--VPEPVAEAI 61 >gi|240122918|ref|ZP_04735874.1| putative DNA ligase [Neisseria gonorrhoeae PID332] Length = 823 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FGT++ + R+ LA + I +A I + F + Sbjct: 588 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 643 >gi|240115079|ref|ZP_04729141.1| putative DNA ligase [Neisseria gonorrhoeae PID18] gi|240125172|ref|ZP_04738058.1| putative DNA ligase [Neisseria gonorrhoeae SK-92-679] gi|240127627|ref|ZP_04740288.1| putative DNA ligase [Neisseria gonorrhoeae SK-93-1035] Length = 823 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FGT++ + R+ LA + I +A I + F + Sbjct: 588 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 643 >gi|240080125|ref|ZP_04724668.1| putative DNA ligase [Neisseria gonorrhoeae FA19] gi|240117363|ref|ZP_04731425.1| putative DNA ligase [Neisseria gonorrhoeae PID1] gi|260441105|ref|ZP_05794921.1| putative DNA ligase [Neisseria gonorrhoeae DGI2] Length = 823 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FGT++ + R+ LA + I +A I + F + Sbjct: 588 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 643 >gi|240015985|ref|ZP_04722525.1| putative DNA ligase [Neisseria gonorrhoeae FA6140] gi|240112339|ref|ZP_04726829.1| putative DNA ligase [Neisseria gonorrhoeae MS11] Length = 823 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FGT++ + R+ LA + I +A I + F + Sbjct: 588 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 643 >gi|240013546|ref|ZP_04720459.1| putative DNA ligase [Neisseria gonorrhoeae DGI18] gi|240120618|ref|ZP_04733580.1| putative DNA ligase [Neisseria gonorrhoeae PID24-1] Length = 823 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FGT++ + R+ LA + I +A I + F + Sbjct: 588 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 643 >gi|254493140|ref|ZP_05106311.1| DNA ligase [Neisseria gonorrhoeae 1291] gi|268598398|ref|ZP_06132565.1| DNA ligase [Neisseria gonorrhoeae MS11] gi|226512180|gb|EEH61525.1| DNA ligase [Neisseria gonorrhoeae 1291] gi|268582529|gb|EEZ47205.1| DNA ligase [Neisseria gonorrhoeae MS11] Length = 829 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FGT++ + R+ LA + I +A I + F + Sbjct: 594 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 649 >gi|221064959|ref|ZP_03541064.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni KF-1] gi|220709982|gb|EED65350.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni KF-1] Length = 191 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 7/65 (10%) Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACKI 603 R++ + L +I GIGP +L G ++ ++ + S + L + GI KK A ++ Sbjct: 67 RERQTFRELIKITGIGPRMALAVLS--GMSIDDLADAVSQQQAGRLVKVPGIGKKTAERL 124 Query: 604 YNHFH 608 Sbjct: 125 LLELK 129 >gi|194097948|ref|YP_002000994.1| putative DNA ligase [Neisseria gonorrhoeae NCCP11945] gi|239998421|ref|ZP_04718345.1| putative DNA ligase [Neisseria gonorrhoeae 35/02] gi|254781380|sp|B4RJQ9|DNLJ_NEIG2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|193933238|gb|ACF29062.1| putative DNA ligase [Neisseria gonorrhoeae NCCP11945] gi|317163707|gb|ADV07248.1| putative DNA ligase [Neisseria gonorrhoeae TCDC-NG08107] Length = 823 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FGT++ + R+ LA + I +A I + F + Sbjct: 588 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 643 >gi|121634462|ref|YP_974707.1| DNA ligase [Neisseria meningitidis FAM18] gi|166216218|sp|A1KSS7|DNLJ_NEIMF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|120866168|emb|CAM09908.1| putative DNA ligase [Neisseria meningitidis FAM18] Length = 841 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FGT++ + R+ LA + I +A I + F + Sbjct: 606 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 661 >gi|121634135|ref|YP_974380.1| Holliday junction DNA helicase motor protein [Neisseria meningitidis FAM18] gi|166230574|sp|A1KRU4|RUVA_NEIMF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|120865841|emb|CAM09573.1| Holliday junction DNA helicase [Neisseria meningitidis FAM18] Length = 194 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 15/94 (15%) Query: 518 LVLNMRDPILYFIQR--LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLL 572 L + + +R++AH FA RK + L +++GIG +L Sbjct: 36 YNLPPVGESVQLFTQLIIREDAHLLFGFATAEERK-----TFRQLIKVSGIGAKTALGIL 90 Query: 573 QSFGTVKMISRSSPET----LASIEGISKKIACK 602 + T ++++ E L+S GI KK A + Sbjct: 91 SAM-TADELAQAVAEEDVKRLSSAPGIGKKTAER 123 >gi|59800688|ref|YP_207400.1| putative DNA ligase [Neisseria gonorrhoeae FA 1090] gi|75356380|sp|Q5F9Z9|DNLJ_NEIG1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|59717583|gb|AAW88988.1| putative DNA ligase [Neisseria gonorrhoeae FA 1090] Length = 823 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FGT++ + R+ LA + I +A I + F + Sbjct: 588 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 643 >gi|15676564|ref|NP_273708.1| DNA ligase [Neisseria meningitidis MC58] gi|161869603|ref|YP_001598770.1| DNA ligase [Neisseria meningitidis 053442] gi|304388085|ref|ZP_07370214.1| NAD-dependent DNA ligase LigA [Neisseria meningitidis ATCC 13091] gi|81784869|sp|Q9K0E3|DNLJ_NEIMB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|190359266|sp|A9M2U7|DNLJ_NEIM0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|7225892|gb|AAF41084.1| DNA ligase [Neisseria meningitidis MC58] gi|161595156|gb|ABX72816.1| DNA ligase [Neisseria meningitidis 053442] gi|304337942|gb|EFM04082.1| NAD-dependent DNA ligase LigA [Neisseria meningitidis ATCC 13091] gi|316983632|gb|EFV62613.1| DNA ligase, NAD-dependent [Neisseria meningitidis H44/76] gi|325139885|gb|EGC62416.1| DNA ligase, NAD-dependent [Neisseria meningitidis CU385] gi|325200648|gb|ADY96103.1| DNA ligase, NAD-dependent [Neisseria meningitidis H44/76] Length = 841 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FGT++ + R+ LA + I +A I + F + Sbjct: 606 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 661 >gi|218767787|ref|YP_002342299.1| putative DNA ligase [Neisseria meningitidis Z2491] gi|166216217|sp|A1IQR7|DNLJ_NEIMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|121051795|emb|CAM08101.1| putative DNA ligase [Neisseria meningitidis Z2491] gi|319410038|emb|CBY90372.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Neisseria meningitidis WUE 2594] Length = 841 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FGT++ + R+ LA + I +A I + F + Sbjct: 606 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 661 >gi|66815705|ref|XP_641869.1| hypothetical protein DDB_G0279107 [Dictyostelium discoideum AX4] gi|60469909|gb|EAL67892.1| hypothetical protein DDB_G0279107 [Dictyostelium discoideum AX4] Length = 1238 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 5/53 (9%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISK----KIACKI 603 PL EING+ R R L + F TVK I+ +SPE L + K IA I Sbjct: 1134 PLVEINGVKQARARALWAAGFKTVKSIALASPEELNKAVKLGKFNSISIAATI 1186 >gi|296329302|ref|ZP_06871803.1| NAD-dependent DNA ligase LigA [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153658|gb|EFG94475.1| NAD-dependent DNA ligase LigA [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 696 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 26/55 (47%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I IG + ++L ++ + + + E L SIEGI + A +I F K + Sbjct: 537 GIPFIGKVASKILAKASKNIDKLMTMTFEELTSIEGIGEIAANEIIAFFTKEKNQ 591 >gi|225420378|ref|ZP_03762681.1| hypothetical protein CLOSTASPAR_06723 [Clostridium asparagiforme DSM 15981] gi|225040997|gb|EEG51243.1| hypothetical protein CLOSTASPAR_06723 [Clostridium asparagiforme DSM 15981] Length = 760 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603 I GIG +++ F T I PE L+ ++GIS+K+A I Sbjct: 90 IKGIGAALAARIVRHFKADTF-RIMEEEPERLSEVKGISEKMAMAI 134 >gi|223044126|ref|ZP_03614165.1| holliday junction DNA helicase RuvA [Staphylococcus capitis SK14] gi|222442520|gb|EEE48626.1| holliday junction DNA helicase RuvA [Staphylococcus capitis SK14] Length = 200 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 5/57 (8%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603 K + L ++ GIGP +L + + + R+ L GI KK A +I Sbjct: 68 KDMFHSLIKVTGIGPKSALAILAA-SSPNEVKRAIENENDAYLTQFPGIGKKTARQI 123 >gi|319787968|ref|YP_004147443.1| 5'-3' exonuclease, N-terminal resolvase-like domain [Pseudoxanthomonas suwonensis 11-1] gi|317466480|gb|ADV28212.1| 5'-3' exonuclease, N-terminal resolvase-like domain [Pseudoxanthomonas suwonensis 11-1] Length = 326 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 4/36 (11%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590 D I G IG +LL FG++ + + + +A Sbjct: 202 DNIPGVGGIGAKTAAILLSHFGSLDELL-ARVDEVA 236 >gi|313199960|ref|YP_004038618.1| DNA protecting protein dpra [Methylovorus sp. MP688] gi|312439276|gb|ADQ83382.1| DNA protecting protein DprA [Methylovorus sp. MP688] Length = 371 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 L + G+G R LL++FG+ + I + + L + + + +A I Sbjct: 16 ALSLVPGLGGQRLCQLLKAFGSPEQIFAAPHDALRQV--VPEPVAEAI 61 >gi|253578000|ref|ZP_04855272.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850318|gb|EES78276.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 614 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNHFH 608 K YS I IG +++ + F ++ I + E ++SI+ I IA + ++F Sbjct: 453 AKVIYS--LGIANIGLANAKVICRHFDDDLEKIRHADKEEISSIDTIGPVIAGSLTDYFS 510 Query: 609 KNTSH 613 ++ Sbjct: 511 NEDNN 515 >gi|237751826|ref|ZP_04582306.1| DNA polymerase I [Helicobacter bilis ATCC 43879] gi|229373192|gb|EEO23583.1| DNA polymerase I [Helicobacter bilis ATCC 43879] Length = 1102 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG-ISKKIACKIYNH 606 I GIGP + +L F +++ + S + +I + K+ A I H Sbjct: 191 GIKGIGPKGAQSILAHFKSLESLYESIEKDYENIVSLLGKRTAGLIKEH 239 >gi|19705038|ref|NP_602533.1| NAD-dependent DNA ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|81485410|sp|Q8RI94|DNLJ_FUSNN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|19712952|gb|AAL93832.1| NAD-dependent DNA ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 696 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 26/55 (47%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I IG + ++L ++ + + + E L SIEGI + A +I F K + Sbjct: 537 GIAEIGKVTSKILAKASKNIDKLMAMTFEDLTSIEGIGEIAANEIIAFFTKEKNQ 591 >gi|310778318|ref|YP_003966651.1| DNA repair protein RadC [Ilyobacter polytropus DSM 2926] gi|309747641|gb|ADO82303.1| DNA repair protein RadC [Ilyobacter polytropus DSM 2926] Length = 225 Score = 42.0 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 26/75 (34%) Query: 544 THRKR-RKKAAY----SPLD----------EINGIGPLRK------RLLLQSFGTVKMIS 582 HRKR R+K S LD I +RK + LL+ F T++ + Sbjct: 6 GHRKRLREKYIKGGYDSFLDYEKLELLLTYSI-----VRKDVKPVAKELLKRFKTLEGVM 60 Query: 583 RSSPETLASIEGISK 597 ++ + L ++G+ + Sbjct: 61 KAPFDELFKVDGLGE 75 >gi|238918762|ref|YP_002932276.1| hypothetical protein NT01EI_0824 [Edwardsiella ictaluri 93-146] gi|259710447|sp|C5BHA5|XNI_EDWI9 RecName: Full=Protein Xni gi|238868330|gb|ACR68041.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 253 Score = 42.0 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 4/39 (10%) Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 S + I+GIG LL+ FG+++ + + LA + Sbjct: 177 SKIPGISGIGAKTAAALLKEFGSLEALYQ----HLAQVP 211 >gi|171914297|ref|ZP_02929767.1| putative exodeoxyribonuclease [Verrucomicrobium spinosum DSM 4136] Length = 732 Score = 42.0 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%) Query: 560 INGIGPLRKRLLLQSFGT--VKMISRSSPETLASIEGISKKIACKIYN 605 I+GIGP + +++ FG+ +I S L +EGI KK +I + Sbjct: 105 IDGIGPKYAQRVVEKFGSEVFDIIENYSAR-LEEVEGIGKKRRQEIRD 151 >gi|33519955|ref|NP_878787.1| DNA ligase [Candidatus Blochmannia floridanus] gi|81666906|sp|Q7VRU2|DNLJ_BLOFL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|33504301|emb|CAD83193.1| DNA ligase [Candidatus Blochmannia floridanus] Length = 594 Score = 42.0 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 25/54 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I G+G L + T++ + + ++ ++ I K A IY+ H++ + Sbjct: 526 GIPGVGESVSNKLAYMYRTIENLMNADLQSFLQLKFIGKIAAMNIYSFLHQSDN 579 >gi|330992004|ref|ZP_08315953.1| hypothetical protein SXCC_01910 [Gluconacetobacter sp. SXCC-1] gi|329761025|gb|EGG77520.1| hypothetical protein SXCC_01910 [Gluconacetobacter sp. SXCC-1] Length = 451 Score = 42.0 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPET---LASIEGISKKIACKI 603 I GIGP+ + L+++FG + + + L + GI K A +I Sbjct: 97 IRGIGPVYAKKLVKAFG--EAVFDLIEQEPGRLREVTGIGPKRAERI 141 >gi|327475176|gb|AEA77183.1| holliday junction DNA helicase [Exiguobacterium sp. EPVM] Length = 195 Score = 42.0 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%) Query: 544 THRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS--SPET--LASIEGISKKI 599 R RR++ ++ L +NGIGP ++ S G + + + + L G+ KK Sbjct: 60 GFRSRRERELFNKLLGVNGIGPKGALAIVAS-GDMDALIDAIETENEKYLTKFPGVGKKT 118 Query: 600 ACK 602 A + Sbjct: 119 AKQ 121 >gi|315640780|ref|ZP_07895882.1| DNA-directed DNA polymerase I [Enterococcus italicus DSM 15952] gi|315483535|gb|EFU74029.1| DNA-directed DNA polymerase I [Enterococcus italicus DSM 15952] Length = 881 Score = 42.0 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 4/36 (11%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590 D I G IG LL FG+V+ I + L Sbjct: 194 DNIPGVTKIGEKTAIKLLNQFGSVEGIYE-HLDELK 228 >gi|258513085|ref|YP_003189342.1| DNA helicase RecD/TraA [Acetobacter pasteurianus IFO 3283-01] gi|256634988|dbj|BAI00963.1| DNA helicase RecD/TraA [Acetobacter pasteurianus IFO 3283-01] gi|256638043|dbj|BAI04011.1| DNA helicase RecD/TraA [Acetobacter pasteurianus IFO 3283-03] gi|256641097|dbj|BAI07058.1| DNA helicase RecD/TraA [Acetobacter pasteurianus IFO 3283-07] gi|256644152|dbj|BAI10106.1| DNA helicase RecD/TraA [Acetobacter pasteurianus IFO 3283-22] gi|256647207|dbj|BAI13154.1| DNA helicase RecD/TraA [Acetobacter pasteurianus IFO 3283-26] gi|256650260|dbj|BAI16200.1| DNA helicase RecD/TraA [Acetobacter pasteurianus IFO 3283-32] gi|256653251|dbj|BAI19184.1| DNA helicase RecD/TraA [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656304|dbj|BAI22230.1| DNA helicase RecD/TraA [Acetobacter pasteurianus IFO 3283-12] Length = 739 Score = 42.0 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPET---LASIEGISKKIACKI 603 I GIGP+ + L+++FG + + + L + GI K A +I Sbjct: 101 IRGIGPVYAKKLVKAFG--EAVFDLIEQEPHRLREVTGIGPKRAERI 145 >gi|210623126|ref|ZP_03293592.1| hypothetical protein CLOHIR_01542 [Clostridium hiranonis DSM 13275] gi|210153803|gb|EEA84809.1| hypothetical protein CLOHIR_01542 [Clostridium hiranonis DSM 13275] Length = 356 Score = 42.0 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 18/40 (45%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ F + I +S E L +EGI + A I N Sbjct: 304 IENLVKYFDNFQDILTASIEELDEVEGIGEIRATYIRNGL 343 >gi|209543162|ref|YP_002275391.1| helicase, RecD/TraA family [Gluconacetobacter diazotrophicus PAl 5] gi|209530839|gb|ACI50776.1| helicase, RecD/TraA family [Gluconacetobacter diazotrophicus PAl 5] Length = 728 Score = 42.0 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPET---LASIEGISKKIACKI 603 I GIGP+ + L+++FG + + + L + GI K A +I Sbjct: 100 IRGIGPVYAKKLVKAFG--EAVFDLIEQEPGRLREVTGIGPKRAERI 144 >gi|162148589|ref|YP_001603050.1| exodeoxyribonuclease [Gluconacetobacter diazotrophicus PAl 5] gi|161787166|emb|CAP56758.1| putative exodeoxyribonuclease [Gluconacetobacter diazotrophicus PAl 5] Length = 728 Score = 42.0 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPET---LASIEGISKKIACKI 603 I GIGP+ + L+++FG + + + L + GI K A +I Sbjct: 100 IRGIGPVYAKKLVKAFG--EAVFDLIEQEPHRLREVTGIGPKRAERI 144 >gi|162146783|ref|YP_001601244.1| exodeoxyribonuclease V alpha chain [Gluconacetobacter diazotrophicus PAl 5] gi|161785360|emb|CAP54908.1| putative exodeoxyribonuclease V alpha chain [Gluconacetobacter diazotrophicus PAl 5] Length = 728 Score = 42.0 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPET---LASIEGISKKIACKI 603 I GIGP+ + L+++FG + + + L + GI K A +I Sbjct: 100 IRGIGPVYAKKLVKAFG--EAVFDLIEQEPGRLREVTGIGPKRAERI 144 >gi|297619372|ref|YP_003707477.1| DNA repair and recombination protein RadA [Methanococcus voltae A3] gi|297378349|gb|ADI36504.1| DNA repair and recombination protein RadA [Methanococcus voltae A3] Length = 322 Score = 42.0 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%) Query: 557 LDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIACK 602 L ++ G+GP L + G I+ ++ L IEGIS+K A K Sbjct: 5 LTDLPGVGPSTAEKLAE--GGYIDFMKIATATVGELTDIEGISEKAAAK 51 >gi|54293931|ref|YP_126346.1| DNA ligase [Legionella pneumophila str. Lens] gi|81368949|sp|Q5WXV3|DNLJ_LEGPL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|53753763|emb|CAH15221.1| DNA ligase [Legionella pneumophila str. Lens] Length = 673 Score = 42.0 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 14/74 (18%) Query: 548 RRKKAAYSPLDE--------------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 + K S L++ I IG R+L + + V+ + ++ E L ++ Sbjct: 494 KSAKNLLSALEKSKKTTFNRFLYALGIREIGEAGARVLAEHYCDVEGLKAATIEELMTLN 553 Query: 594 GISKKIACKIYNHF 607 I A + + F Sbjct: 554 DIGPVAASHVVHFF 567 >gi|315125371|ref|YP_004067374.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas sp. SM9913] gi|315013884|gb|ADT67222.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas sp. SM9913] Length = 911 Score = 42.0 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 9/54 (16%) Query: 558 DEINGI---GPLRKRLLLQSFGTVKM-ISRSSPETLASIEGISKKIACKIYNHF 607 D I G+ GP LQ +G+++ I +S + I +K+A I +H Sbjct: 188 DNIPGVEGCGPKTAVKWLQKYGSLQGVIDNAS--DIK--GKIGEKLAKAI-DHL 236 >gi|302550272|ref|ZP_07302614.1| 5'-3' exonuclease [Streptomyces viridochromogenes DSM 40736] gi|302467890|gb|EFL30983.1| 5'-3' exonuclease [Streptomyces viridochromogenes DSM 40736] Length = 301 Score = 42.0 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 L + GIG LL FG + I + E Sbjct: 197 LPGVPGIGEKTAAKLLAEFGDLAGIMAA-VED 227 >gi|284163506|ref|YP_003401785.1| DNA repair and recombination protein RadA [Haloterrigena turkmenica DSM 5511] gi|284013161|gb|ADB59112.1| DNA repair and recombination protein RadA [Haloterrigena turkmenica DSM 5511] Length = 343 Score = 42.0 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 5/53 (9%) Query: 557 LDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYNH 606 L+ + G+GP L F + + ++ +SP L++ + + A I Sbjct: 6 LETLPGVGPATADKL--HDAGFDSYQSLAVASPSELSNTADVGESTASDIVRA 56 >gi|166235520|gb|ABY85436.1| homing endonuclease [Agaricus bisporus] Length = 328 Score = 42.0 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%) Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN 42 GVY G YVG + +L R+ SY + Sbjct: 70 GVYIFKTSTGSC-YVGSSISLYNRVCSYFMPS 100 >gi|157374877|ref|YP_001473477.1| DNA ligase (NAD(+)) [Shewanella sediminis HAW-EB3] gi|190359288|sp|A8FU26|DNLJ_SHESH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157317251|gb|ABV36349.1| DNA ligase (NAD(+)) [Shewanella sediminis HAW-EB3] Length = 670 Score = 42.0 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 5/45 (11%), Positives = 15/45 (33%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G L F + + + + ++ + +A + F Sbjct: 520 VGEATAANLANYFKNLDKLKSADADEFIKVDDVGAIVAQHLTYFF 564 >gi|126700113|ref|YP_001089010.1| putative competence protein [Clostridium difficile 630] gi|254976091|ref|ZP_05272563.1| putative competence protein [Clostridium difficile QCD-66c26] gi|255307526|ref|ZP_05351697.1| putative competence protein [Clostridium difficile ATCC 43255] gi|255315224|ref|ZP_05356807.1| putative competence protein [Clostridium difficile QCD-76w55] gi|255517893|ref|ZP_05385569.1| putative competence protein [Clostridium difficile QCD-97b34] gi|255651008|ref|ZP_05397910.1| putative competence protein [Clostridium difficile QCD-37x79] gi|260684077|ref|YP_003215362.1| putative competence protein [Clostridium difficile CD196] gi|260687736|ref|YP_003218870.1| putative competence protein [Clostridium difficile R20291] gi|306520874|ref|ZP_07407221.1| putative competence protein [Clostridium difficile QCD-32g58] gi|115251550|emb|CAJ69383.1| Competence protein ComEA [Clostridium difficile] gi|260210240|emb|CBA64489.1| putative competence protein [Clostridium difficile CD196] gi|260213753|emb|CBE05675.1| putative competence protein [Clostridium difficile R20291] Length = 234 Score = 42.0 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 LD + G+G +LQ F ++ E + ++ GI K I + Sbjct: 182 ELDSLPGVGEATANKILQHREENGQFSSI--------EEIKNVNGIGDKKYENIKD 229 >gi|254303498|ref|ZP_04970856.1| DNA ligase (NAD(+)) [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323690|gb|EDK88940.1| DNA ligase (NAD(+)) [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 696 Score = 42.0 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 K YS I IG + ++L ++ + + + E L SIEGI + A +I F+K Sbjct: 531 KVIYS--LGIPFIGKVASKVLAKASRNIDKLMTMTFEDLTSIEGIGEIAANEIIAFFNKE 588 Query: 611 TSH 613 + Sbjct: 589 KNQ 591 >gi|50086044|ref|YP_047554.1| DNA polymerase I [Acinetobacter sp. ADP1] gi|49532020|emb|CAG69732.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter sp. ADP1] Length = 920 Score = 42.0 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 7/47 (14%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 + GIG LL +G++ I L +++ I K+ I + Sbjct: 187 GVPGIGAKTAAKLLTEYGSIGGI-------LENVDQIKGKVGQNIKD 226 >gi|315645942|ref|ZP_07899063.1| competence protein ComEA helix-hairpin-helix repeat protein [Paenibacillus vortex V453] gi|315278703|gb|EFU42017.1| competence protein ComEA helix-hairpin-helix repeat protein [Paenibacillus vortex V453] Length = 222 Score = 42.0 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 8/49 (16%) Query: 557 LDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACK 602 L E+ GIG + + ++ FG + S L +++GI K+ K Sbjct: 172 LMELPGIGEAKAQAIIDYRKQFGPFR-----SIADLMNVKGIGPKMLEK 215 >gi|296138332|ref|YP_003645575.1| hypothetical protein Tpau_0598 [Tsukamurella paurometabola DSM 20162] gi|296026466|gb|ADG77236.1| protein of unknown function DUF147 [Tsukamurella paurometabola DSM 20162] Length = 360 Score = 42.0 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 18/40 (45%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L+ +FG+++ + +S L + GI A ++ Sbjct: 310 IEALVAAFGSLQTLLAASAADLQGVPGIGAVWARQVREGL 349 >gi|225012503|ref|ZP_03702939.1| DNA protecting protein DprA [Flavobacteria bacterium MS024-2A] gi|225003480|gb|EEG41454.1| DNA protecting protein DprA [Flavobacteria bacterium MS024-2A] Length = 365 Score = 42.0 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 24/42 (57%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598 L+ + G+G R + ++ FG+ + I + + S+EGI +K Sbjct: 10 LESLPGMGWNRAQRMVTHFGSPEAIFLAKHQDWESVEGIGEK 51 >gi|160878404|ref|YP_001557372.1| RecD/TraA family helicase [Clostridium phytofermentans ISDg] gi|160427070|gb|ABX40633.1| helicase, RecD/TraA family [Clostridium phytofermentans ISDg] Length = 742 Score = 42.0 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I G+G +++ F T +I PE L+ ++GIS K+A +IY F + Sbjct: 89 IKGVGTALAARIVRKFKEKTFVIIEE-EPERLSEVKGISDKLAREIYRQFSE 139 >gi|75906804|ref|YP_321100.1| DNA polymerase I [Anabaena variabilis ATCC 29413] gi|75700529|gb|ABA20205.1| DNA polymerase A [Anabaena variabilis ATCC 29413] Length = 977 Score = 42.0 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 8/48 (16%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS-KKIAC 601 D I G IG LL ++G++ + ++ L I+G + KK+A Sbjct: 212 DNIPGVRGIGEKTAVQLLSTYGSLDGVYKA----LNEIKGATQKKLAE 255 >gi|17228749|ref|NP_485297.1| DNA polymerase I [Nostoc sp. PCC 7120] gi|17130601|dbj|BAB73211.1| DNA polymerase I [Nostoc sp. PCC 7120] Length = 977 Score = 42.0 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 8/48 (16%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS-KKIAC 601 D I G IG LL ++G++ + ++ L I+G + KK+A Sbjct: 212 DNIPGVRGIGEKTAVQLLSTYGSLDGVYKA----LNEIKGATQKKLAE 255 >gi|309389718|gb|ADO77598.1| DNA polymerase I [Halanaerobium praevalens DSM 2228] Length = 880 Score = 42.0 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 6/48 (12%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + GIG LL+ FGT++ I ++ + ++ KK +Y + Sbjct: 199 GVPGIGKKTALKLLKEFGTMEEIL-ANIDQVS-----GKKRKENLYKY 240 >gi|254805692|ref|YP_003083913.1| holliday junction DNA helicase [Neisseria meningitidis alpha14] gi|254669234|emb|CBA08082.1| holliday junction DNA helicase [Neisseria meningitidis alpha14] Length = 194 Score = 42.0 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 15/93 (16%) Query: 519 VLNMRDPILYFIQR--LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQ 573 L + + +R++AH FA RK + L +++GIG +L Sbjct: 37 NLPPVGESVQLFTQLIIREDAHLLFGFATAEERK-----TFRQLIKVSGIGAKTALGILS 91 Query: 574 SFGTVKMISRSSPET----LASIEGISKKIACK 602 + T ++R+ E L+S GI KK A + Sbjct: 92 AM-TADELARAVAEEDVKRLSSAPGIGKKTAER 123 >gi|226310992|ref|YP_002770886.1| DNA polymerase I [Brevibacillus brevis NBRC 100599] gi|226093940|dbj|BAH42382.1| DNA polymerase I [Brevibacillus brevis NBRC 100599] Length = 882 Score = 42.0 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 10/56 (17%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 + G+G LL +G+V+ + E + + G K+ + +N Sbjct: 191 GVPGVGEKTALKLLHEYGSVEQV----LENIDKVSG------KKLQENLRENVDKA 236 >gi|226325746|ref|ZP_03801264.1| hypothetical protein COPCOM_03559 [Coprococcus comes ATCC 27758] gi|225205870|gb|EEG88224.1| hypothetical protein COPCOM_03559 [Coprococcus comes ATCC 27758] Length = 165 Score = 42.0 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616 I GIGP + + FG T++ I +P+ L I GIS+K I + K T Sbjct: 101 IKGIGPKMADTIFRKFGLQTLE-IMEKNPQELLKIRGISEKKLAAIVESYGKKPGVPGT 158 >gi|158522683|ref|YP_001530553.1| RecD/TraA family helicase [Desulfococcus oleovorans Hxd3] gi|158511509|gb|ABW68476.1| helicase, RecD/TraA family [Desulfococcus oleovorans Hxd3] Length = 736 Score = 42.0 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 5/63 (7%) Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHF 607 + S L + G+G R + + FG T +I PE LA + GI A I N + Sbjct: 82 QNYLQSGL--VQGVGTAMARKITRHFGKETFSVIEN-QPERLAEVPGIGAATALMIRNAW 138 Query: 608 HKN 610 ++ Sbjct: 139 REH 141 >gi|145295383|ref|YP_001138204.1| NAD-dependent DNA ligase LigA [Corynebacterium glutamicum R] gi|166215581|sp|A4QDK5|DNLJ_CORGB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|140845303|dbj|BAF54302.1| hypothetical protein [Corynebacterium glutamicum R] Length = 680 Score = 42.0 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 6/64 (9%) Query: 550 KKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 +K+ + L I +GP R L + +++ + + E L+ +G+ IA Sbjct: 508 QKSKQTDLWRVLVALSIRHVGPTAARALAGRYHSIQALIDAPLEELSETDGVGTIIAQSF 567 Query: 604 YNHF 607 + F Sbjct: 568 KDWF 571 >gi|19552465|ref|NP_600467.1| NAD-dependent DNA ligase LigA [Corynebacterium glutamicum ATCC 13032] gi|62390131|ref|YP_225533.1| NAD-dependent DNA ligase LigA [Corynebacterium glutamicum ATCC 13032] gi|81760918|sp|Q8NR20|DNLJ_CORGL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|21324011|dbj|BAB98637.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Corynebacterium glutamicum ATCC 13032] gi|41325467|emb|CAF19947.1| DNA LIGASE [Corynebacterium glutamicum ATCC 13032] Length = 680 Score = 42.0 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 6/64 (9%) Query: 550 KKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 +K+ + L I +GP R L + +++ + + E L+ +G+ IA Sbjct: 508 QKSKQTDLWRVLVALSIRHVGPTAARALAGRYHSIQALIDAPLEELSETDGVGTIIAQSF 567 Query: 604 YNHF 607 + F Sbjct: 568 KDWF 571 >gi|311029021|ref|ZP_07707111.1| DNA integrity scanning protein DisA [Bacillus sp. m3-13] Length = 357 Score = 42.0 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 25/54 (46%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L +I + PL L+ F +K I ++ E L ++GI + A KI + Sbjct: 293 VLHKIPRLPPLVIENLVCRFWNLKQILNATVEELDDVDGIGEVRARKIKEGLKR 346 >gi|269926773|ref|YP_003323396.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermobaculum terrenum ATCC BAA-798] gi|269790433|gb|ACZ42574.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermobaculum terrenum ATCC BAA-798] Length = 206 Score = 42.0 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 14/59 (23%) Query: 552 AAYSPLDEINGIGPLRKRLLL----QS--FGTVKMISRSSPETLASIEGISKKIACKIY 604 A L+E+ GIGP + ++ + F ++ E L + GI I Sbjct: 150 ATKEQLEELPGIGPSKAAAIIEFRQKHGPFNSL--------EDLLDVPGIGPSTLENIK 200 >gi|239832168|ref|ZP_04680497.1| DNA repair protein RadC [Ochrobactrum intermedium LMG 3301] gi|239824435|gb|EEQ96003.1| DNA repair protein RadC [Ochrobactrum intermedium LMG 3301] Length = 249 Score = 42.0 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 7/36 (19%), Positives = 18/36 (50%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 + LL FG++ + + + +A + G +A ++ Sbjct: 73 KALLTRFGSIAEVLAAPEKLIAEVPGAGPTVAHELK 108 >gi|229543680|ref|ZP_04432740.1| DNA repair protein RadC [Bacillus coagulans 36D1] gi|229328100|gb|EEN93775.1| DNA repair protein RadC [Bacillus coagulans 36D1] Length = 227 Score = 42.0 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 19/38 (50%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ F ++ + +S E + SI+GI A +I Sbjct: 52 RLIRHFEGLRFLKDASLEEMTSIKGIGTAKAVQILAAI 89 >gi|73959081|ref|XP_536967.2| PREDICTED: similar to excision repair cross-complementing rodent repair deficiency, complementation group 4 [Canis familiaris] Length = 917 Score = 42.0 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 L ++ G+ R L+ + ++ S + L + G + A ++Y+ H + + Sbjct: 853 LLKMPGVNAKNCRALMHHVKNIAELASLSQDQLVGVLG-NAGNAKQLYDFIHTSYAE 908 >gi|319941758|ref|ZP_08016080.1| Holliday junction DNA helicase RuvA [Sutterella wadsworthensis 3_1_45B] gi|319804691|gb|EFW01558.1| Holliday junction DNA helicase RuvA [Sutterella wadsworthensis 3_1_45B] Length = 193 Score = 42.0 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 7/58 (12%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACKI 603 +A + L +I+G+GP LL G TV + + L + GI KK A ++ Sbjct: 69 RAVFRALIKISGVGPKIALALLS--GITVDQLKDAVDRGETGLLTKVPGIGKKTAERL 124 >gi|298373964|ref|ZP_06983922.1| DNA polymerase type I [Bacteroides sp. 3_1_19] gi|298268332|gb|EFI09987.1| DNA polymerase type I [Bacteroides sp. 3_1_19] Length = 921 Score = 42.0 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 7/52 (13%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETL--ASIEGISKKIACKIY 604 D I G +G + LL FG+++ + ++ + L A + + + A +I+ Sbjct: 188 DNIPGCPGVGEKTAQKLLTEFGSIENLL-ANTDKLKGAQKKKVEEN-AEQIH 237 >gi|269468816|gb|EEZ80420.1| Holliday junction resolvasome, DNA-binding subunit [uncultured SUP05 cluster bacterium] Length = 195 Score = 42.0 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 5/57 (8%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603 K + L +NGIGP +L V + + LA GI KK A K+ Sbjct: 68 KILFRELIRVNGIGPKVALAILSHL-NVASLMNAVANEDDALLAKTPGIGKKTAQKL 123 >gi|239906503|ref|YP_002953244.1| helicase RecD/TraA family protein [Desulfovibrio magneticus RS-1] gi|239796369|dbj|BAH75358.1| helicase RecD/TraA family protein [Desulfovibrio magneticus RS-1] Length = 725 Score = 42.0 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKK 598 K S L I GIGP+ + +++ FG T+ +I + + L + GI K Sbjct: 90 KYLGSGL--IKGIGPVMAKRIVKLFGEATLDVI-EADIQKLIEVPGIGSK 136 >gi|15613896|ref|NP_242199.1| late competence operon required for DNA binding and uptake [Bacillus halodurans C-125] gi|10173949|dbj|BAB05052.1| late competence operon required for DNA binding and uptake [Bacillus halodurans C-125] Length = 210 Score = 42.0 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 6/62 (9%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS--SPETLASIEGISKKIACKIYNHFH 608 +A L + GIGP + ++ + + + S E L ++ GI +K K+ + Sbjct: 153 RATEVELQSLPGIGPAKATAII----SYREEHGAFSSLEELMNVSGIGEKSYEKLAPYLR 208 Query: 609 KN 610 N Sbjct: 209 LN 210 >gi|312880597|ref|ZP_07740397.1| helicase, RecD/TraA family [Aminomonas paucivorans DSM 12260] gi|310783888|gb|EFQ24286.1| helicase, RecD/TraA family [Aminomonas paucivorans DSM 12260] Length = 738 Score = 42.0 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 5/67 (7%) Query: 539 RFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLAS-IEGIS 596 R A HR+RR + L + +GIG +++ +G + + R++P LA +EGI Sbjct: 146 RLAWEAHRQRRGVLLF--LHD-HGIGAATANRIVRRYGDEAERVVRANPYQLAEDVEGIG 202 Query: 597 KKIACKI 603 A +I Sbjct: 203 FATADRI 209 >gi|207092382|ref|ZP_03240169.1| Holliday junction DNA helicase motor protein [Helicobacter pylori HPKX_438_AG0C1] Length = 183 Score = 42.0 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 7/81 (8%) Query: 527 LYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSF--GTVKMISRS 584 L +Q +R++AH + + +K + L +ING+G +L SF + I + Sbjct: 46 LKILQVIREDAH--LLYGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENII-A 102 Query: 585 SPE--TLASIEGISKKIACKI 603 + E L + GI KK+A KI Sbjct: 103 TKEVKRLQQVPGIGKKLADKI 123 >gi|300390220|gb|ADK10922.1| ComEA [Thermoanaerobacterium saccharolyticum] Length = 204 Score = 42.0 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 10/58 (17%) Query: 552 AAYSPLDEINGIGPLRKRLLL----QSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 A LD + GIG + + ++ Q G + I E + ++ I K+ +I + Sbjct: 148 ATKEELDTLPGIGEVTAQRIIDFREQH-GNFQKI-----EDIMNVSRIGPKLFEQIKD 199 >gi|295103817|emb|CBL01361.1| GIY-YIG catalytic domain. [Faecalibacterium prausnitzii SL3/3] Length = 141 Score = 42.0 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 44/107 (41%), Gaps = 18/107 (16%) Query: 1 MSSEQMPECPGVYQMLDIA---GRVL------YVGKAYNLQKRIKSYMHSNN--HTHRIT 49 + + +P+ GVY + +++ Y+G++ N+ RI + + + Sbjct: 16 LDKDDLPKKSGVYLVYAGKPVSDKIVSLRKLFYIGESSNIHDRIVEHNRDKDWKDGLKEG 75 Query: 50 HMISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPY 96 ++ + + E LL EA +I KP +N D ++P+ Sbjct: 76 ELLYYAYAL-----APKDERLLEEAALIYYYKPPYNTEYVD--NYPF 115 >gi|224436530|ref|ZP_03657539.1| Holliday junction DNA helicase RuvA [Helicobacter cinaedi CCUG 18818] gi|313143033|ref|ZP_07805226.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter cinaedi CCUG 18818] gi|313128064|gb|EFR45681.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter cinaedi CCUG 18818] Length = 195 Score = 42.0 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 7/58 (12%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQ-----SFGTVKMISRSSPETLASIEGISKKIACKI 603 K + L +ING+GP +L F K+IS + L + GI K A KI Sbjct: 70 KQTFERLIKINGVGPKVALAILSTYTPMEF--AKIISNKDVDALKKVPGIGAKGAGKI 125 >gi|138895891|ref|YP_001126344.1| hypothetical protein GTNG_2250 [Geobacillus thermodenitrificans NG80-2] gi|134267404|gb|ABO67599.1| Conserved hypothetical protein [Geobacillus thermodenitrificans NG80-2] Length = 396 Score = 42.0 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKI 603 PL+ I G+G LL FGT ++++ + E +A G +K+A I Sbjct: 326 PLEFIPGLGLKSYEKLLSRFGTEMRVLHEVTEEEIAETVG--QKLARLI 372 >gi|323703616|ref|ZP_08115260.1| DNA repair protein RadC [Desulfotomaculum nigrificans DSM 574] gi|323531449|gb|EGB21344.1| DNA repair protein RadC [Desulfotomaculum nigrificans DSM 574] Length = 227 Score = 42.0 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 21/37 (56%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 ++ F ++ +++++ E L++I+GI A ++ Sbjct: 53 IIGRFKDLRALAQATVEELSAIKGIGPVKAVQVKAAL 89 >gi|319638704|ref|ZP_07993464.1| competence protein ComEA helix-hairpin-helix repeat protein [Neisseria mucosa C102] gi|317400088|gb|EFV80749.1| competence protein ComEA helix-hairpin-helix repeat protein [Neisseria mucosa C102] Length = 95 Score = 42.0 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + +++ F +V E L +++GI + K+ Sbjct: 30 ELEALPGIGPAKAKAIVEYRQKNGAFKSV--------EELKNVKGIGDAVLNKLKA 77 >gi|261380534|ref|ZP_05985107.1| DNA topoisomerase [Neisseria subflava NJ9703] gi|284796498|gb|EFC51845.1| DNA topoisomerase [Neisseria subflava NJ9703] Length = 95 Score = 42.0 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + +++ F +V E L +++GI + K+ Sbjct: 30 ELEALPGIGPAKAKAIVEYRQKNGAFKSV--------EELKNVKGIGDAVLNKLKA 77 >gi|317050124|ref|YP_004117772.1| DNA ligase (NAD(+)) [Pantoea sp. At-9b] gi|316951741|gb|ADU71216.1| DNA ligase (NAD(+)) [Pantoea sp. At-9b] Length = 589 Score = 42.0 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 5/59 (8%) Query: 554 YSPLDEINGIGPLRKRLLLQSFGTVKMI---SRSSPETLASIEGISKKIACKIYNHFHK 609 S LD I+GI + LL S GT+ + +PE +A + GIS A +I++ F++ Sbjct: 425 KSVLD-ISGIQRSTWQRLLDS-GTISHLFSWLALTPEQIAQVAGISPARAQQIWHRFNQ 481 >gi|290791409|gb|EFD95068.1| hypothetical protein GL50803_10677 [Giardia lamblia ATCC 50803] Length = 195 Score = 42.0 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 24/46 (52%) Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 G+ + R L + F T++ I SS + +AS+ G S++ A + Sbjct: 145 GLSKPKIRSLCEHFKTLRDICMSSVKEIASLPGFSEETAATLLRRL 190 >gi|309378930|emb|CBX22517.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 99 Score = 42.0 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + LA ++GI + K+ + Sbjct: 30 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLAKVKGIGPAVLAKLRD 77 >gi|170290966|ref|YP_001737782.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Korarchaeum cryptofilum OPF8] gi|170175046|gb|ACB08099.1| DEAD/DEAH box helicase domain protein [Candidatus Korarchaeum cryptofilum OPF8] Length = 695 Score = 42.0 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Query: 561 NGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605 G+G +R +LL ++ + TV+ I+ + PE L I GI K+++ ++ + Sbjct: 637 KGVGRVRAKLLYEAGYRTVRDIAEAEPEQLERIVGIGKQLSRELVD 682 >gi|325959641|ref|YP_004291107.1| DEAD/DEAH box helicase domain-containing protein [Methanobacterium sp. AL-21] gi|325331073|gb|ADZ10135.1| DEAD/DEAH box helicase domain protein [Methanobacterium sp. AL-21] Length = 690 Score = 42.0 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G R R +++ FG + +PE L I+GI K A I F Sbjct: 645 LGRKRARAVVKVFG--DDLKHVTPEKLTRIDGIGPKTAEAIIAKF 687 >gi|95930424|ref|ZP_01313160.1| Competence protein ComEA helix-hairpin-helix region [Desulfuromonas acetoxidans DSM 684] gi|95133464|gb|EAT15127.1| Competence protein ComEA helix-hairpin-helix region [Desulfuromonas acetoxidans DSM 684] Length = 89 Score = 42.0 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 18/31 (58%) Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNH 606 GT I+ ++ E L S+ GI +K A KI + Sbjct: 25 GTAVNINTATVEQLQSVNGIGQKTAEKIVAY 55 >gi|322392021|ref|ZP_08065484.1| NAD-dependent DNA ligase LigA [Streptococcus peroris ATCC 700780] gi|321145119|gb|EFX40517.1| NAD-dependent DNA ligase LigA [Streptococcus peroris ATCC 700780] Length = 652 Score = 42.0 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 29/49 (59%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G +LL+Q F +++ ++++ PE +++IE + IA + +F Sbjct: 502 GIRHVGSKASKLLVQHFHSIETLAQADPEEVSNIETLGSVIAKSLQTYF 550 >gi|307609752|emb|CBW99264.1| DNA ligase [Legionella pneumophila 130b] Length = 650 Score = 42.0 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 14/74 (18%) Query: 548 RRKKAAYSPLDE--------------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 + K S L++ I IG + R+L + + V+ + ++ E L ++ Sbjct: 494 KSAKNLLSALEKSKKTTFNRFLYALGIREIGEVGARVLAEHYCDVEGLKAATIEELMTLN 553 Query: 594 GISKKIACKIYNHF 607 I A + + F Sbjct: 554 DIGPVAASHVVHFF 567 >gi|317132479|ref|YP_004091793.1| DNA repair protein RadC [Ethanoligenens harbinense YUAN-3] gi|315470458|gb|ADU27062.1| DNA repair protein RadC [Ethanoligenens harbinense YUAN-3] Length = 242 Score = 42.0 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%) Query: 570 LLLQSFG-TVKMISRSSPETLASIEGISKKIA 600 LL +FG ++ + + E L + GI + A Sbjct: 53 RLLDAFGGSLSSVFDAPLEELQKVPGIGQNTA 84 >gi|269926190|ref|YP_003322813.1| PHP domain protein [Thermobaculum terrenum ATCC BAA-798] gi|269789850|gb|ACZ41991.1| PHP domain protein [Thermobaculum terrenum ATCC BAA-798] Length = 584 Score = 42.0 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 5/57 (8%) Query: 556 PLDEINGIGPLRKRLLLQSF--GTVKMISRSSPET--LASIEGISKKIACKIYNHFH 608 L ++ +GP R +LL G++ + + E + ++G+ K +I Sbjct: 103 ELLQVPDLGPKRVKLLWGELKVGSLDALELA-IEDGRIYKVKGLGPKAIERIIEGLK 158 >gi|254292990|ref|YP_003059013.1| DNA repair protein RadC [Hirschia baltica ATCC 49814] gi|254041521|gb|ACT58316.1| DNA repair protein RadC [Hirschia baltica ATCC 49814] Length = 272 Score = 42.0 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 17/35 (48%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 + L+ FG + + + + L ++GI + A I Sbjct: 96 KALIDKFGGISGVMAAPIKRLKEVDGIGETCATYI 130 >gi|189465636|ref|ZP_03014421.1| hypothetical protein BACINT_01996 [Bacteroides intestinalis DSM 17393] gi|189437910|gb|EDV06895.1| hypothetical protein BACINT_01996 [Bacteroides intestinalis DSM 17393] Length = 665 Score = 42.0 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 25/45 (55%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + + +SF ++ + + E L +I+ I +KIA I ++F Sbjct: 515 VGETVAKKIAKSFTDIEELENADLERLINIDEIGEKIAQSIISYF 559 >gi|154499911|ref|ZP_02037949.1| hypothetical protein BACCAP_03568 [Bacteroides capillosus ATCC 29799] gi|150271509|gb|EDM98766.1| hypothetical protein BACCAP_03568 [Bacteroides capillosus ATCC 29799] Length = 233 Score = 42.0 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 20/30 (66%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIA 600 LL FG+++ + + PE L+ ++G+ ++ A Sbjct: 55 LLDRFGSLQGVLDAPPEALSQVKGVGERAA 84 >gi|149912934|ref|ZP_01901468.1| DNA repair protein RadC [Roseobacter sp. AzwK-3b] gi|149813340|gb|EDM73166.1| DNA repair protein RadC [Roseobacter sp. AzwK-3b] Length = 254 Score = 42.0 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 27/88 (30%), Gaps = 35/88 (39%) Query: 533 LRDEAHRFAITTHRKRRKKAAYS---------PLDE------INGIGPLRK------RLL 571 +RD HRKR + S L E I R+ R L Sbjct: 35 IRD---------HRKRLRDRFLSGGAAAMPDYELLELVLFRAIP-----RRDVKPLARQL 80 Query: 572 LQSFGTVKMISRSSPETLASIEGISKKI 599 L FG + +S L + GI + Sbjct: 81 LDRFGDFNAVISASAAQLTEVPGIGDAV 108 >gi|158522359|ref|YP_001530229.1| RecD/TraA family helicase [Desulfococcus oleovorans Hxd3] gi|158511185|gb|ABW68152.1| helicase, RecD/TraA family [Desulfococcus oleovorans Hxd3] Length = 722 Score = 42.0 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKK 598 I GIGP+ + + FG T++ + + LA + GI KK Sbjct: 91 IKGIGPVTAERITKKFGKKTLQ-VLETDISRLAKVPGIGKK 130 >gi|159899035|ref|YP_001545282.1| Holliday junction DNA helicase RuvA [Herpetosiphon aurantiacus ATCC 23779] gi|229560066|sp|A9AZL0|RUVA_HERA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|159892074|gb|ABX05154.1| Holliday junction DNA helicase RuvA [Herpetosiphon aurantiacus ATCC 23779] Length = 197 Score = 42.0 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 21/66 (31%) Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL------------ASIEGISK 597 ++A + L ++GIGP LL S ++PE L + + GI K Sbjct: 68 QRALFELLLGVSGIGPKVALALL---------SAATPEELQHAIAREDITMLSKVPGIGK 118 Query: 598 KIACKI 603 K A ++ Sbjct: 119 KTAARL 124 >gi|88800180|ref|ZP_01115748.1| Holliday junction DNA helicase motor protein [Reinekea sp. MED297] gi|88777026|gb|EAR08233.1| Holliday junction DNA helicase motor protein [Reinekea sp. MED297] Length = 201 Score = 42.0 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 15/79 (18%) Query: 533 LRDEAH---RFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRS 584 +R++AH FA ++++ + L +I+G+GP +L F ++ I Sbjct: 53 IREDAHVLYGFA-----TQKERTLFRTLIKISGVGPKLALAILSGMETNRF--IQSIQDQ 105 Query: 585 SPETLASIEGISKKIACKI 603 P L I G+ KK A ++ Sbjct: 106 DPGALVKIPGVGKKTAERL 124 >gi|330960233|gb|EGH60493.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. maculicola str. ES4326] Length = 787 Score = 41.6 bits (96), Expect = 0.34, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G ++L +S ++ + ++ PE L + I ++A +I++ F Sbjct: 535 GIPDVGEETAKVLARSLASLDRVKQALPEVLTYLPDIGLEVAHEIHSFF 583 Score = 38.9 bits (89), Expect = 2.2, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 2/48 (4%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP + L + FGT++ + + + + +K A + + F Sbjct: 628 IPSVGPGAAQKLAEKFGTLEAVISADWLDMRQA--LPEKQAKSVRDFF 673 >gi|307132282|ref|YP_003884298.1| DNA polymerase IV [Dickeya dadantii 3937] gi|306529811|gb|ADM99741.1| DNA polymerase IV [Dickeya dadantii 3937] Length = 352 Score = 41.6 bits (96), Expect = 0.34, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 29/80 (36%) Query: 556 PLDEINGIGPLRKRL-------------------LLQSFGTVKMI----------SRSSP 586 PL++I G+G + + LL+ FG I + SP Sbjct: 177 PLEKIPGVGKVTAKRLAECGLHTCADVRRYALTELLREFGKFGRILWERCHGIDERQVSP 236 Query: 587 ETLASIEGISKKIACKIYNH 606 + L G+ K +A I++ Sbjct: 237 DRLRKSVGVEKTLAQDIHDW 256 >gi|224539983|ref|ZP_03680522.1| hypothetical protein BACCELL_04895 [Bacteroides cellulosilyticus DSM 14838] gi|224518409|gb|EEF87514.1| hypothetical protein BACCELL_04895 [Bacteroides cellulosilyticus DSM 14838] Length = 694 Score = 41.6 bits (96), Expect = 0.34, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 25/45 (55%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + + +SF ++ + + E L +I+ I +KIA I ++F Sbjct: 544 VGETVAKKIAKSFTDIEELENADLERLINIDEIGEKIAQSIISYF 588 >gi|70729275|ref|YP_259012.1| NAD-dependent DNA ligase LigA [Pseudomonas fluorescens Pf-5] gi|123734866|sp|Q4KFH1|DNLJ_PSEF5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|68343574|gb|AAY91180.1| DNA ligase, NAD-dependent [Pseudomonas fluorescens Pf-5] Length = 788 Score = 41.6 bits (96), Expect = 0.34, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 4/53 (7%) Query: 557 LD--EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 LD I +GP + L FG+++ + + + + +K A + F Sbjct: 625 LDKLNIPSVGPGAAQKLADKFGSLQGVIEADWLDMRQA--LPEKQAKAVREFF 675 Score = 40.9 bits (94), Expect = 0.62, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 28/49 (57%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G ++L +S G+++ + ++ P+ L + + ++A +I++ F Sbjct: 535 GIPDVGEETAKVLARSLGSLERVQQALPQVLTYLPDVGLEVAHEIHSFF 583 >gi|304314106|ref|YP_003849253.1| DNA mismatch recognition protein MutS [Methanothermobacter marburgensis str. Marburg] gi|302587565|gb|ADL57940.1| predicted DNA mismatch recognition protein MutS [Methanothermobacter marburgensis str. Marburg] Length = 642 Score = 41.6 bits (96), Expect = 0.34, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 7/60 (11%) Query: 551 KAAYSP---LDEINGIGPLRKRLLLQSFGT----VKMISRSSPETLASIEGISKKIACKI 603 K+ S L +++GIG + ++ G +K + + +ASIEGIS++ A +I Sbjct: 3 KSMNSVGEALTDVSGIGERLAQKIIDELGGEKELLKAVENLEIDRIASIEGISQRKAIEI 62 >gi|126659779|ref|ZP_01730906.1| NAD-dependent DNA ligase LigA [Cyanothece sp. CCY0110] gi|126618931|gb|EAZ89673.1| NAD-dependent DNA ligase LigA [Cyanothece sp. CCY0110] Length = 677 Score = 41.6 bits (96), Expect = 0.34, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 27/45 (60%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G + LL ++F ++ +S++S +L S+ G+ +IA I + F Sbjct: 523 VGSVTANLLTENFLSIDQLSQASFTSLCSVYGVGGEIAQSIIDWF 567 >gi|226311452|ref|YP_002771346.1| Holliday junction ATP-dependent DNA helicase [Brevibacillus brevis NBRC 100599] gi|254766947|sp|C0ZAN3|RUVA_BREBN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226094400|dbj|BAH42842.1| Holliday junction ATP-dependent DNA helicase [Brevibacillus brevis NBRC 100599] Length = 205 Score = 41.6 bits (96), Expect = 0.35, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 35/82 (42%) Query: 534 RDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL---- 589 RDE + + L +++GIGP G + +++ ++PE L Sbjct: 65 RDE--------------RDLFRKLLDVSGIGPK---------GGLAILAAATPEQLVMAV 101 Query: 590 --------ASIEGISKKIACKI 603 GI KK A +I Sbjct: 102 QQENVTYLTKFPGIGKKTAQRI 123 >gi|225175210|ref|ZP_03729206.1| protein of unknown function DUF147 [Dethiobacter alkaliphilus AHT 1] gi|225169386|gb|EEG78184.1| protein of unknown function DUF147 [Dethiobacter alkaliphilus AHT 1] Length = 356 Score = 41.6 bits (96), Expect = 0.35, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 10/57 (17%) Query: 556 PLDEINGIGPLR-----KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 LD+I R L++ FGT++ + R+ E L +EGI + A I + Sbjct: 292 ILDKIP-----RLPMPVIENLVEQFGTLQGVLRAGEEVLDEVEGIGEARARNIRSGL 343 >gi|290068|gb|AAC36974.1| DNA polymerase [Deinococcus radiodurans R1] gi|737486|prf||1922368A DNA polymerase I Length = 921 Score = 41.6 bits (96), Expect = 0.35, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 3/30 (10%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRS 584 D I G IGP LLQ +GT++ + + Sbjct: 191 DNIPGAKGIGPKTAAKLLQEYGTLEKVYEA 220 >gi|15806710|ref|NP_295430.1| DNA-directed DNA polymerase [Deinococcus radiodurans R1] gi|7404361|sp|P52027|DPO1_DEIRA RecName: Full=DNA polymerase I; Short=POL I gi|6459477|gb|AAF11264.1|AE002012_4 DNA-directed DNA polymerase [Deinococcus radiodurans R1] Length = 956 Score = 41.6 bits (96), Expect = 0.35, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 3/30 (10%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRS 584 D I G IGP LLQ +GT++ + + Sbjct: 226 DNIPGAKGIGPKTAAKLLQEYGTLEKVYEA 255 >gi|296332103|ref|ZP_06874567.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675502|ref|YP_003867174.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23] gi|296150874|gb|EFG91759.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413746|gb|ADM38865.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23] Length = 880 Score = 41.6 bits (96), Expect = 0.35, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 6/48 (12%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + G+G LL+ F +V+ + S + ++ KK+ K+ Sbjct: 194 GVPGVGEKTAIKLLKQFDSVEKLLE-SIDEVS-----GKKLKEKLEEF 235 >gi|238021644|ref|ZP_04602070.1| hypothetical protein GCWU000324_01546 [Kingella oralis ATCC 51147] gi|237866258|gb|EEP67300.1| hypothetical protein GCWU000324_01546 [Kingella oralis ATCC 51147] Length = 195 Score = 41.6 bits (96), Expect = 0.35, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 5/56 (8%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACK 602 +A + L +++GIG +L +F + ++ + + L++ GI KK A + Sbjct: 69 RATFRQLVKVSGIGAKTALGILSAF-SADELAAAIAQEDIKRLSAAPGIGKKTAER 123 >gi|312213571|emb|CBX90000.1| hypothetical protein [Leptosphaeria maculans] Length = 172 Score = 41.6 bits (96), Expect = 0.35, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 8/87 (9%) Query: 9 CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQI------NNIRFTV 62 G+Y + + +YVG++ +L+KR Y + R +IS+ +N T+ Sbjct: 52 KAGIYMLTNKLTCDIYVGQSIDLRKRFMKYFSLSYINSRKELIISRALIKYGYSNFSVTI 111 Query: 63 TC--TEVEALLLEANMIKRLKPRFNIL 87 E + + E +L P++NI Sbjct: 112 LEYCNESDLDVKEQYYFDKLNPQYNIQ 138 >gi|239946695|ref|ZP_04698448.1| DNA polymerase I family protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239920971|gb|EER20995.1| DNA polymerase I family protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 875 Score = 41.6 bits (96), Expect = 0.35, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 D I G IGP L+ FG+V+ I S + ++SI+ Sbjct: 186 DNIPGVPSIGPKTASSLITQFGSVENIFN-SLDQISSIK 223 >gi|212638555|ref|YP_002315075.1| Holliday junction DNA helicase RuvA [Anoxybacillus flavithermus WK1] gi|226725432|sp|B7GFM6|RUVA_ANOFW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|212560035|gb|ACJ33090.1| Holliday junction resolvasome, DNA-binding subunit [Anoxybacillus flavithermus WK1] Length = 197 Score = 41.6 bits (96), Expect = 0.35, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 44/98 (44%), Gaps = 8/98 (8%) Query: 510 FFVKKGEALVLNMRDP-ILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRK 568 F + +N + ++Y Q +R++ A+ R+++ ++ L +++GIGP Sbjct: 28 IFTPNPFSFQMNKQQQIVVYTYQYVREDV--LALYGFHTRQERMLFAKLLQVSGIGPKGA 85 Query: 569 RLLLQSFGTVKMISRSSPET----LASIEGISKKIACK 602 +L + G ++ + + L G+ KK A + Sbjct: 86 LAILAA-GQLEQLVEAIEAENDQFLCKFPGVGKKTARQ 122 >gi|317132010|ref|YP_004091324.1| DNA ligase, NAD-dependent [Ethanoligenens harbinense YUAN-3] gi|315469989|gb|ADU26593.1| DNA ligase, NAD-dependent [Ethanoligenens harbinense YUAN-3] Length = 661 Score = 41.6 bits (96), Expect = 0.36, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 22/45 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G L+ FG+++ + ++ + L +I+ I IA + F Sbjct: 508 VGQKAAGLIAARFGSMERLFSATEDELCAIDEIGGIIAENVVRFF 552 >gi|171742868|ref|ZP_02918675.1| hypothetical protein BIFDEN_01984 [Bifidobacterium dentium ATCC 27678] gi|283456105|ref|YP_003360669.1| COME operon protein 1 [Bifidobacterium dentium Bd1] gi|171278482|gb|EDT46143.1| hypothetical protein BIFDEN_01984 [Bifidobacterium dentium ATCC 27678] gi|283102739|gb|ADB09845.1| COME operon protein 1 [Bifidobacterium dentium Bd1] Length = 131 Score = 41.6 bits (96), Expect = 0.36, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 9/50 (18%) Query: 556 PLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGI-SKKIAC 601 L + GIGP+ + +L FG + + L ++GI SK +A Sbjct: 79 ELQTLEGIGPVTAQRILDYRMQFGRFDNV-----DQLMEVKGIGSKTLAK 123 >gi|167769926|ref|ZP_02441979.1| hypothetical protein ANACOL_01267 [Anaerotruncus colihominis DSM 17241] gi|167667917|gb|EDS12047.1| hypothetical protein ANACOL_01267 [Anaerotruncus colihominis DSM 17241] Length = 753 Score = 41.6 bits (96), Expect = 0.36, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 3/52 (5%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + G+GP R L+++FG T+ + +P LA I+GIS K A +I N + K Sbjct: 106 VKGVGPAIARRLVRAFGDDTLT-VMEQNPAKLAEIQGISPKKAEQISNEYKK 156 >gi|111226523|ref|XP_001134548.1| BRCT domain-containing protein [Dictyostelium discoideum AX4] gi|90970627|gb|EAS66865.1| BRCT domain-containing protein [Dictyostelium discoideum AX4] Length = 843 Score = 41.6 bits (96), Expect = 0.36, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 3/64 (4%) Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRS-SPETLASIEGISKKIACKIYN 605 + + S L I GIG ++L + F ++ + S S E++ G+ ++ + I+N Sbjct: 656 KSRGLASLLCAIGIPGIGSSNSKILSEKFQSLDNLINSPSIESIELQSGLGRQTSESIFN 715 Query: 606 HFHK 609 F+ Sbjct: 716 FFNP 719 >gi|55821538|ref|YP_139980.1| late competence protein required for DNA binding and uptake [Streptococcus thermophilus LMG 18311] gi|55823466|ref|YP_141907.1| late competence protein required for DNA binding and uptake [Streptococcus thermophilus CNRZ1066] gi|55737523|gb|AAV61165.1| late competence protein required for DNA binding and uptake [Streptococcus thermophilus LMG 18311] gi|55739451|gb|AAV63092.1| late competence protein required for DNA binding and uptake [Streptococcus thermophilus CNRZ1066] Length = 231 Score = 41.6 bits (96), Expect = 0.36, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 8/59 (13%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 A L I+GIG R ++ G + S + L ++ GI K KI Sbjct: 175 ATSEQLQTISGIGAKRAEDIIAYRESHGGFQ-----SVDDLKNVSGIGDKTLDKIRESL 228 >gi|313202065|ref|YP_004040723.1| holliday junction DNA helicase ruva [Methylovorus sp. MP688] gi|312441381|gb|ADQ85487.1| Holliday junction DNA helicase RuvA [Methylovorus sp. MP688] Length = 192 Score = 41.6 bits (96), Expect = 0.36, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 7/65 (10%) Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACKI 603 R++ + L ++NGIG +L G +V ++++ + + L + GI KK A ++ Sbjct: 67 RERQTFRQLLKVNGIGAKSALSILS--GLSVDDLAQAVALQETALLTRVPGIGKKTAERL 124 Query: 604 YNHFH 608 Sbjct: 125 LLELK 129 >gi|322437324|ref|YP_004219536.1| Holliday junction DNA helicase RuvA [Acidobacterium sp. MP5ACTX9] gi|321165051|gb|ADW70756.1| Holliday junction DNA helicase RuvA [Acidobacterium sp. MP5ACTX9] Length = 196 Score = 41.6 bits (96), Expect = 0.36, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 9/75 (12%) Query: 548 RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKM------ISRSSPETLASIEGISKKIAC 601 R++K+ + L I GIGP +L + I +TL I GI KK A Sbjct: 66 RQEKSLFEKLLTITGIGPKLAITVLS---GIAADRLVTAIRGGDHDTLVKIPGIGKKTAE 122 Query: 602 KIYNHFHKNTSHTPT 616 ++ T Sbjct: 123 RVVLELKDKLDDMAT 137 >gi|254000106|ref|YP_003052169.1| Holliday junction DNA helicase RuvA [Methylovorus sp. SIP3-4] gi|253986785|gb|ACT51642.1| Holliday junction DNA helicase RuvA [Methylovorus sp. SIP3-4] Length = 192 Score = 41.6 bits (96), Expect = 0.36, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 7/65 (10%) Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACKI 603 R++ + L ++NGIG +L G +V ++++ + + L + GI KK A ++ Sbjct: 67 RERQTFRQLLKVNGIGAKSALSILS--GLSVDDLAQAVALQETALLTRVPGIGKKTAERL 124 Query: 604 YNHFH 608 Sbjct: 125 LLELK 129 >gi|241663908|ref|YP_002982268.1| DNA repair protein RadC [Ralstonia pickettii 12D] gi|240865935|gb|ACS63596.1| DNA repair protein RadC [Ralstonia pickettii 12D] Length = 224 Score = 41.6 bits (96), Expect = 0.36, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 4/40 (10%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 R LL FG++ + +S + +SI G+ Y H Sbjct: 48 RELLTHFGSLARLCHASQQEFSSINGMGPAK----YAQLH 83 >gi|157376443|ref|YP_001475043.1| exonuclease IX [Shewanella sediminis HAW-EB3] gi|189030098|sp|A8FYJ2|XNI_SHESH RecName: Full=Protein Xni gi|157318817|gb|ABV37915.1| 5'-3' exonuclease [Shewanella sediminis HAW-EB3] Length = 255 Score = 41.6 bits (96), Expect = 0.36, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 7/45 (15%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 + GIGP LL++F ++ I +S + I K A K+ Sbjct: 182 GVPGIGPKSAIELLRTFRSLANIY-ASLD------KIGAKQAKKL 219 >gi|302037359|ref|YP_003797681.1| DNA ligase (NAD(+)) [Candidatus Nitrospira defluvii] gi|300605423|emb|CBK41756.1| DNA ligase (NAD(+)) [Candidatus Nitrospira defluvii] Length = 675 Score = 41.6 bits (96), Expect = 0.36, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 8/72 (11%) Query: 549 RKKAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602 R K+ LD I +G R+L + FGT+ + ++ E L + I +I+ Sbjct: 506 RSKSV--SLDRLLMGLGIRQVGQHIARVLAKQFGTLSKLMSATQEDLLQVREIGPEISAS 563 Query: 603 IYNHFHKNTSHT 614 + + F + + Sbjct: 564 LTSFFSEERNRA 575 >gi|298676088|ref|YP_003727838.1| DNA mismatch repair protein MutS domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298289076|gb|ADI75042.1| DNA mismatch repair protein MutS domain protein [Methanohalobium evestigatum Z-7303] Length = 696 Score = 41.6 bits (96), Expect = 0.36, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 4/49 (8%) Query: 556 PLDEINGIGPLRKRLLLQSFGT----VKMISRSSPETLASIEGISKKIA 600 L ++ IG + + FG+ + I +++ IEGI +K A Sbjct: 3 SLQDVPRIGDKTAQRFIGHFGSEEAALNAILNGDIASISEIEGIGQKFA 51 >gi|239907719|ref|YP_002954460.1| holliday junction DNA helicase RuvA [Desulfovibrio magneticus RS-1] gi|259495640|sp|C4XIJ9|RUVA_DESMR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|239797585|dbj|BAH76574.1| holliday junction DNA helicase RuvA [Desulfovibrio magneticus RS-1] Length = 202 Score = 41.6 bits (96), Expect = 0.36, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 5/58 (8%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISR--SS--PETLASIEGISKKIACKIY 604 + + L I+ +GP +L F T + R +S E L + GI KK A +I+ Sbjct: 70 RETFRTLIGISKLGPRTALAILSHF-TADDLLRVVASGDAEALVRVPGIGKKSAQRIF 126 >gi|94676849|ref|YP_588544.1| DNA ligase, NAD-dependent [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|123260587|sp|Q1LU20|DNLJ_BAUCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|94219999|gb|ABF14158.1| DNA ligase, NAD-dependent [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 671 Score = 41.6 bits (96), Expect = 0.36, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 20/47 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 IG + L + + + + E+L I+ I +A + N FH Sbjct: 522 IGETKAAYLADYYKHIDALMAADIESLTKIQDIGIIVATNVLNFFHN 568 >gi|89099000|ref|ZP_01171880.1| Holliday junction DNA helicase motor protein [Bacillus sp. NRRL B-14911] gi|89086404|gb|EAR65525.1| Holliday junction DNA helicase motor protein [Bacillus sp. NRRL B-14911] Length = 203 Score = 41.6 bits (96), Expect = 0.36, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 5/67 (7%) Query: 540 FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGI 595 FA+ R +K ++ L ++GIGP +L S G + ++ + L G+ Sbjct: 57 FALYGFHSREEKMLFTKLLNVSGIGPKGALAILAS-GEPAQVVQAIEDEDEAFLVKFPGV 115 Query: 596 SKKIACK 602 KK A + Sbjct: 116 GKKTARQ 122 >gi|321312443|ref|YP_004204730.1| DNA polymerase I [Bacillus subtilis BSn5] gi|320018717|gb|ADV93703.1| DNA polymerase I [Bacillus subtilis BSn5] Length = 880 Score = 41.6 bits (96), Expect = 0.37, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 6/48 (12%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + G+G LL+ F +V+ + S + ++ KK+ K+ Sbjct: 194 GVPGVGEKTAIKLLKQFDSVEKLLE-SIDEVS-----GKKLKEKLEEF 235 >gi|303240177|ref|ZP_07326697.1| helicase, RecD/TraA family [Acetivibrio cellulolyticus CD2] gi|302592268|gb|EFL61996.1| helicase, RecD/TraA family [Acetivibrio cellulolyticus CD2] Length = 736 Score = 41.6 bits (96), Expect = 0.37, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFH 608 + S L I G+GP + +++ FG T+ I PE L+ I+GI+ + A +I F+ Sbjct: 81 RYLASGL--IKGVGPASAKKIVKKFGEDTI-NIIEFHPEKLSEIKGINHEKALRIGQAFY 137 Query: 609 K 609 + Sbjct: 138 E 138 >gi|291485342|dbj|BAI86417.1| DNA polymerase I [Bacillus subtilis subsp. natto BEST195] Length = 880 Score = 41.6 bits (96), Expect = 0.37, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 6/48 (12%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + G+G LL+ F +V+ + S + ++ KK+ K+ Sbjct: 194 GVPGVGEKTAIKLLKQFDSVEKLLE-SIDEVS-----GKKLKEKLEEF 235 >gi|283797409|ref|ZP_06346562.1| DNA ligase, NAD-dependent [Clostridium sp. M62/1] gi|291074764|gb|EFE12128.1| DNA ligase, NAD-dependent [Clostridium sp. M62/1] gi|295090074|emb|CBK76181.1| DNA ligase, NAD-dependent [Clostridium cf. saccharolyticum K10] Length = 684 Score = 41.6 bits (96), Expect = 0.37, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Query: 559 EINGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 + GIG ++L + F + + E L +++GI + +A F ++ Sbjct: 522 GVAGIGLANAKMLCRHFQYDFHAMRCAGKEELTAVDGIGEVLADAWIQFFADEKNNQ 578 >gi|331002346|ref|ZP_08325864.1| Holliday junction DNA helicase RuvA [Lachnospiraceae oral taxon 107 str. F0167] gi|330410162|gb|EGG89596.1| Holliday junction DNA helicase RuvA [Lachnospiraceae oral taxon 107 str. F0167] Length = 196 Score = 41.6 bits (96), Expect = 0.37, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 12/102 (11%) Query: 509 KFFVKKGEALVLNMRDPIL---YFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGP 565 + F + ++ D IL Y R+ D+AH + + + L I+G+GP Sbjct: 27 EVFTCGRDIQSVSKTDEILIYTYL--RISDDAH--TLYGFLNKDDLLMFKKLLGISGVGP 82 Query: 566 LRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603 ++ + G+ + + +++ +GI +KIA +I Sbjct: 83 KAALSIMSTLGSFD-LKMAIVSDDYKAISAAQGIGQKIAKRI 123 >gi|330808456|ref|YP_004352918.1| DNA ligase (NAD(+)) [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376564|gb|AEA67914.1| DNA ligase (NAD(+)) [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 785 Score = 41.6 bits (96), Expect = 0.37, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 4/53 (7%) Query: 557 LD--EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 LD I +GP + L FG+++ + + + + +K A + F Sbjct: 622 LDKLNIPSVGPGGAQKLADKFGSLEAVMNADWLDMRQA--LPEKQANAVREFF 672 Score = 40.9 bits (94), Expect = 0.63, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 27/49 (55%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G ++L +S G+++ + + P+ L + + ++A +I++ F Sbjct: 535 GIPDVGEETAKVLARSLGSLERVQAAVPQVLTYLPDVGLEVAHEIHSFF 583 >gi|325474386|gb|EGC77574.1| Holliday junction ATP-dependent DNA helicase ruvA [Treponema denticola F0402] Length = 201 Score = 41.6 bits (96), Expect = 0.37, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 19/75 (25%) Query: 544 THR----------KRRKKAAYSPLDEINGIGPLRKRLL-----LQSFGTV-KMISRSSPE 587 HR + +++ + L ++ G+GP ++ L L F ++ K + + Sbjct: 52 YHREDQMRLFGFPNQAERSLFLDLTKVEGVGP--RQALKIMSGLN-FSSLEKALEEGDLD 108 Query: 588 TLASIEGISKKIACK 602 TL G+ KK A K Sbjct: 109 TLQKAPGVGKKTAQK 123 >gi|88861394|ref|ZP_01136024.1| NAD-dependent DNA ligase [Pseudoalteromonas tunicata D2] gi|88816660|gb|EAR26485.1| NAD-dependent DNA ligase [Pseudoalteromonas tunicata D2] Length = 673 Score = 41.6 bits (96), Expect = 0.37, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 20/47 (42%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G L + T+ I +S ++L + + + +A + F + Sbjct: 521 VGEATALNLANHYLTLDAIMAASVDSLQEVADVGEIVAKHVNFFFRE 567 >gi|222109711|ref|YP_002551975.1| holliday junction DNA helicase ruva [Acidovorax ebreus TPSY] gi|254766958|sp|B9MCH5|RUVA_DIAST RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|221729155|gb|ACM31975.1| Holliday junction DNA helicase RuvA [Acidovorax ebreus TPSY] Length = 190 Score = 41.6 bits (96), Expect = 0.37, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 5/51 (9%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRS-SPET---LASIEGISKKIACK 602 L +I+G+GP +L G V ++++ S + L + GI KK A + Sbjct: 74 ELIKISGVGPRTALSILSGMG-VADLAQAVSLQEAGRLVKVPGIGKKTAER 123 >gi|121595991|ref|YP_987887.1| Holliday junction DNA helicase RuvA [Acidovorax sp. JS42] gi|166229625|sp|A1WC36|RUVA_ACISJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|120608071|gb|ABM43811.1| Holliday junction DNA helicase RuvA [Acidovorax sp. JS42] Length = 190 Score = 41.6 bits (96), Expect = 0.37, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 5/51 (9%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRS-SPET---LASIEGISKKIACK 602 L +I+G+GP +L G V ++++ S + L + GI KK A + Sbjct: 74 ELIKISGVGPRTALSILSGMG-VADLAQAVSLQEAGRLVKVPGIGKKTAER 123 >gi|257465376|ref|ZP_05629747.1| ComEA protein [Actinobacillus minor 202] gi|257451036|gb|EEV25079.1| ComEA protein [Actinobacillus minor 202] Length = 207 Score = 41.6 bits (96), Expect = 0.37, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L ++GIG + + +++ V I +S L++I GI KI + Sbjct: 157 LQSLSGIGEAKAKAIVEYRNKVGKIKSAS--ELSNISGIGDATIEKITPYL 205 >gi|240949860|ref|ZP_04754185.1| ComEA protein [Actinobacillus minor NM305] gi|240295677|gb|EER46382.1| ComEA protein [Actinobacillus minor NM305] Length = 207 Score = 41.6 bits (96), Expect = 0.37, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L ++GIG + + +++ V I +S L++I GI KI + Sbjct: 157 LQSLSGIGEAKAKAIVEYRNKVGKIKSAS--ELSNISGIGDATIEKITPYL 205 >gi|254489942|ref|ZP_05103137.1| DNA ligase, NAD-dependent [Methylophaga thiooxidans DMS010] gi|224465027|gb|EEF81281.1| DNA ligase, NAD-dependent [Methylophaga thiooxydans DMS010] Length = 673 Score = 41.6 bits (96), Expect = 0.37, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 18/47 (38%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G R L F + + + E L IE + +A I F + Sbjct: 523 VGEATARSLAMHFADLDALKAADSEALVEIEDVGPIVAHHIETFFQQ 569 >gi|239618403|ref|YP_002941725.1| protein of unknown function DUF147 [Kosmotoga olearia TBF 19.5.1] gi|239507234|gb|ACR80721.1| protein of unknown function DUF147 [Kosmotoga olearia TBF 19.5.1] Length = 355 Score = 41.6 bits (96), Expect = 0.37, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 18/30 (60%) Query: 574 SFGTVKMISRSSPETLASIEGISKKIACKI 603 +G++ + ++S E L +EG+ +K A I Sbjct: 312 KYGSLARLLKTSVEELKEVEGVGEKRARAI 341 >gi|171060623|ref|YP_001792972.1| Holliday junction DNA helicase RuvA [Leptothrix cholodnii SP-6] gi|229560097|sp|B1Y8E1|RUVA_LEPCP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|170778068|gb|ACB36207.1| Holliday junction DNA helicase RuvA [Leptothrix cholodnii SP-6] Length = 191 Score = 41.6 bits (96), Expect = 0.37, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 7/57 (12%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACK 602 +A + L +I+G+G +L G +V ++++ S + L + GI KK A + Sbjct: 69 RATFRQLLKISGVGARTALSILS--GLSVADLAQAVSAQEAGRLVKVPGIGKKTAER 123 >gi|315656502|ref|ZP_07909391.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315493061|gb|EFU82663.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 799 Score = 41.6 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 25/49 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP+ R + + F T+ + +S E L EGI + IA I + F Sbjct: 632 SIRHLGPVAARTIARQFVTMSALRVASAEQLGEAEGIGEVIAASIRDWF 680 >gi|304390721|ref|ZP_07372673.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304325604|gb|EFL92850.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 799 Score = 41.6 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 25/49 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP+ R + + F T+ + +S E L EGI + IA I + F Sbjct: 632 SIRHLGPVAARTIARQFVTMSALRVASAEQLGEAEGIGEVIAASIRDWF 680 >gi|298345134|ref|YP_003717821.1| DNA ligase (NAD(+)) [Mobiluncus curtisii ATCC 43063] gi|298235195|gb|ADI66327.1| DNA ligase (NAD(+)) [Mobiluncus curtisii ATCC 43063] Length = 799 Score = 41.6 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 25/49 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP+ R + + F T+ + +S E L EGI + IA I + F Sbjct: 632 SIRHLGPVAARTIARQFVTMSALRVASAEQLGEAEGIGEVIAASIRDWF 680 >gi|46445654|ref|YP_007019.1| Holliday junction DNA helicase [Candidatus Protochlamydia amoebophila UWE25] gi|81627839|sp|Q6MFA5|RUVA_PARUW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|46399295|emb|CAF22744.1| probable Holliday junction DNA helicase [Candidatus Protochlamydia amoebophila UWE25] Length = 201 Score = 41.6 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 5/57 (8%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKI 603 + + L + GIGP L+ ++ + + TL + G+ KK A ++ Sbjct: 69 RDIFEILMNVTGIGPKMALSLIGHL-SMSELQIAVMRQDLSTLCRVPGVGKKTAERL 124 >gi|16079961|ref|NP_390787.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168] gi|221310850|ref|ZP_03592697.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168] gi|221315176|ref|ZP_03596981.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320093|ref|ZP_03601387.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. JH642] gi|221324375|ref|ZP_03605669.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. SMY] gi|6015001|sp|O34996|DPO1_BACSU RecName: Full=DNA polymerase I; Short=POL I gi|2293272|gb|AAC00350.1| DNA-polymerase I [Bacillus subtilis] gi|2635374|emb|CAB14869.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168] Length = 880 Score = 41.6 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 6/48 (12%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + G+G LL+ F +V+ + S + ++ KK+ K+ Sbjct: 194 GVPGVGEKTAIKLLKQFDSVEKLLE-SIDEVS-----GKKLKEKLEEF 235 >gi|325970645|ref|YP_004246836.1| DNA polymerase I [Spirochaeta sp. Buddy] gi|324025883|gb|ADY12642.1| DNA polymerase I [Spirochaeta sp. Buddy] Length = 948 Score = 41.6 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 5/49 (10%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASI-EGISKKIACKIYNH 606 + GIG LLQ FG+++ I L + G+ KK+A + N Sbjct: 237 GVKGIGEKGAAKLLQQFGSLEGIYS----NLKLVAPGLQKKLAEGVENA 281 >gi|300123590|emb|CBK24862.2| unnamed protein product [Blastocystis hominis] Length = 245 Score = 41.6 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 4/62 (6%) Query: 550 KKAAYS----PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 K +S L INGI L F T+ I ++ + L+ + G+ K IY Sbjct: 170 KNDLFSQASNVLTSINGINKDNVVSLTSRFKTMSDIITANIDDLSELSGMGDKRVLSIYR 229 Query: 606 HF 607 F Sbjct: 230 AF 231 >gi|254427631|ref|ZP_05041338.1| DNA ligase, NAD-dependent [Alcanivorax sp. DG881] gi|196193800|gb|EDX88759.1| DNA ligase, NAD-dependent [Alcanivorax sp. DG881] Length = 776 Score = 41.6 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 22/51 (43%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 IG + L FG ++ I R+ L ++ + ++A I F + + Sbjct: 522 IGEETAKNLADCFGDLEGIRRAPLLLLLAVPDVGMEVAKAIGAFFAEADNE 572 >gi|15791243|ref|NP_281067.1| DNA repair and recombination protein RadA [Halobacterium sp. NRC-1] gi|10581871|gb|AAG20547.1| DNA repair protein [Halobacterium sp. NRC-1] Length = 386 Score = 41.6 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 R+ S L+E+ G+GP L + F + ++ ++ L++ I + A + Sbjct: 41 RRYMPESDLEELPGVGPATAEKLRDNGFDAFQSLAVANSAELSNTADIGESTAADVIQAA 100 Query: 608 HKNTS 612 + Sbjct: 101 REAAD 105 >gi|325913348|ref|ZP_08175716.1| DNA ligase (NAD+) [Lactobacillus iners UPII 60-B] gi|325477451|gb|EGC80595.1| DNA ligase (NAD+) [Lactobacillus iners UPII 60-B] Length = 672 Score = 41.6 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I+ +G RL+ + F + I S L I+ I + IA + +F + + Sbjct: 513 GIDHVGAKAARLIAKKFHDLNTIRECSIADLMQIDTIGQTIAESMVKYFEQQS 565 >gi|309379780|emb|CBX21556.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 194 Score = 41.6 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 15/93 (16%) Query: 519 VLNMRDPILYFIQR--LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQ 573 L + + +R++AH FA R+ + L +++GIG +L Sbjct: 37 NLPPVGESVQLFTQLIIREDAHLLFGFATNEERQ-----TFRQLIKVSGIGAKTALGILS 91 Query: 574 SFGTVKMISRSSPET----LASIEGISKKIACK 602 + T ++R+ E L+S GI KK A + Sbjct: 92 AM-TADELARAVAEEDVKRLSSAPGIGKKTAER 123 >gi|108759370|ref|YP_633776.1| NAD-dependent DNA ligase [Myxococcus xanthus DK 1622] gi|123074067|sp|Q1D0P7|DNLJ_MYXXD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|108463250|gb|ABF88435.1| DNA ligase, NAD-dependent [Myxococcus xanthus DK 1622] Length = 672 Score = 41.6 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 25/51 (49%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G + L ++F +M+ +S E ++ ++ + +A I+ F + Sbjct: 519 GIRHVGDATAKALAEAFPRSEMLFEASLEDISRVKDVGPIMAQVIHTFFQE 569 >gi|331270422|ref|YP_004396914.1| RecD/TraA family helicase [Clostridium botulinum BKT015925] gi|329126972|gb|AEB76917.1| helicase, RecD/TraA family [Clostridium botulinum BKT015925] Length = 741 Score = 41.6 bits (96), Expect = 0.39, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%) Query: 560 INGIGPLRKRLLLQSF--GTVKMISRSSPETLASIEGISKKIACKI 603 I+GIGP+ + +++ F T++ + + E L I+GI K I Sbjct: 88 ISGIGPVTAKKIVEHFKEKTLE-VLDENIEKLKEIDGIGSKKVETI 132 >gi|289450450|ref|YP_003474988.1| DNA ligase (NAD+) [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184997|gb|ADC91422.1| DNA ligase (NAD+) [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 758 Score = 41.6 bits (96), Expect = 0.39, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 8/67 (11%) Query: 551 KAAYSPLD------EINGIGPLRKRLLLQSF--GTVKMISRSSPETLASIEGISKKIACK 602 KA PLD I+ +G + + L +F G + ++ + ETL S+E I + A Sbjct: 587 KAKVKPLDRFIVALGIDYVGVVAAKKLAVAFRKGGLSALAAADIETLLSVETIGQTAAQS 646 Query: 603 IYNHFHK 609 I + F + Sbjct: 647 IIDFFKR 653 >gi|323342039|ref|ZP_08082272.1| crossover junction ATP-dependent DNA helicase RuvA [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464464|gb|EFY09657.1| crossover junction ATP-dependent DNA helicase RuvA [Erysipelothrix rhusiopathiae ATCC 19414] Length = 195 Score = 41.6 bits (96), Expect = 0.39, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 10/96 (10%) Query: 510 FFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI--TTHRKRRKKAAYSPLDEINGIGPLR 567 F E + LN I + Q +R++ AI ++R+ + L + G+GP Sbjct: 28 VFCGNPEMVTLN-ESIIFHTYQHVRED----AIILFGFVEKRELDIFRQLITVKGVGPKT 82 Query: 568 KRLLLQSFGTVKMISRSSPET---LASIEGISKKIA 600 +L F ++ E L + G+ K+A Sbjct: 83 GITILSRFSGDDIVRAIDQEDMAFLKKLPGVGPKMA 118 >gi|315231921|ref|YP_004072357.1| glycogen branching enzyme [Thermococcus barophilus MP] gi|315184949|gb|ADT85134.1| glycogen branching enzyme [Thermococcus barophilus MP] Length = 666 Score = 41.6 bits (96), Expect = 0.39, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKK 598 S L +I GIG + L ++ T+ + + E LA IS K Sbjct: 609 NIQSELLKIKGIGSKTLKKLEKAGIRTLNDLKSADLEDLARRTKISVK 656 >gi|329946980|ref|ZP_08294392.1| comEA protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328526791|gb|EGF53804.1| comEA protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 267 Score = 41.6 bits (96), Expect = 0.39, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 14/60 (23%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A+ S L+++ GIGP + +++ F +S + L + GI K + Sbjct: 212 ASASELEKLPGIGPALAQRIVEYRDSHGPF--------ASVDALTDVPGIGKAKLEALRE 263 Score = 41.2 bits (95), Expect = 0.49, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNH 606 GTV I+ +S L + GI +A +I + Sbjct: 205 GTV-NINTASASELEKLPGIGPALAQRIVEY 234 >gi|229815190|ref|ZP_04445526.1| hypothetical protein COLINT_02236 [Collinsella intestinalis DSM 13280] gi|229809200|gb|EEP44966.1| hypothetical protein COLINT_02236 [Collinsella intestinalis DSM 13280] Length = 246 Score = 41.6 bits (96), Expect = 0.39, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 12/59 (20%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIY 604 +A+ S LD + G+GP R + V+ + + E L + GI +K K+ Sbjct: 190 RASESDLDALPGVGPSTARAI------VED-RDANGPFSTIEDLMRVSGIGEKKFEKLK 241 >gi|94986731|ref|YP_594664.1| exonuclease V subunit alpha [Lawsonia intracellularis PHE/MN1-00] gi|94730980|emb|CAJ54343.1| ATP-dependent exoDNAse (exonuclease V), alpha subunit-helicase superfamily I member [Lawsonia intracellularis PHE/MN1-00] Length = 732 Score = 41.6 bits (96), Expect = 0.39, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 5/56 (8%) Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603 K+ S L I GIG ++ FG T I +SPE L I+GI+KK +I Sbjct: 92 KRYLSSGL--IKGIGKKTAESIVTEFGEETFH-ILDTSPEELLKIKGITKKKLDQI 144 >gi|260903878|ref|ZP_05912200.1| competence protein [Brevibacterium linens BL2] Length = 302 Score = 41.6 bits (96), Expect = 0.39, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 13/59 (22%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS-----FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L+ + G+GP+ ++ F ++ + L + GI K + + Sbjct: 247 ADLTTLETLPGVGPVTAEAIIAYREEQPF--------ATVDDLLLVPGIGPKTFESLKD 297 >gi|309781502|ref|ZP_07676238.1| DNA repair protein RadC [Ralstonia sp. 5_7_47FAA] gi|308919915|gb|EFP65576.1| DNA repair protein RadC [Ralstonia sp. 5_7_47FAA] Length = 224 Score = 41.6 bits (96), Expect = 0.39, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 4/40 (10%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 R LL FG++ + +S + +SI G+ Y H Sbjct: 48 RELLTHFGSLARLCHASQQEFSSINGMGPAK----YAQLH 83 >gi|269216606|ref|ZP_06160460.1| DNA ligase, NAD-dependent [Slackia exigua ATCC 700122] gi|269130135|gb|EEZ61217.1| DNA ligase, NAD-dependent [Slackia exigua ATCC 700122] Length = 709 Score = 41.6 bits (96), Expect = 0.39, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 23/49 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G + ++ ++ + R+S E LA+I+G+ IA I Sbjct: 544 GIRHVGKTTGAQIAAAYPSMDALMRASEEDLAAIDGVGGIIAKSIRAFL 592 >gi|120602092|ref|YP_966492.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris DP4] gi|166215378|sp|A1VC99|DNLJ1_DESVV RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 1 gi|120562321|gb|ABM28065.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris DP4] Length = 680 Score = 41.6 bits (96), Expect = 0.39, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 21/54 (38%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G R L F + + ++ E L + I ++A I F ++ Sbjct: 521 GIRHVGEQTARTLATHFVDLDAMRKADGEKLLHLPDIGPEVAASIRCFFDNQSN 574 >gi|310830491|ref|YP_003965592.1| Helicase RecD/TraA [Paenibacillus polymyxa SC2] gi|309249958|gb|ADO59524.1| Helicase RecD/TraA [Paenibacillus polymyxa SC2] Length = 749 Score = 41.6 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 7/55 (12%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKIYNHFHKN 610 + GIG + ++ FG + + R E L + GIS+ A I + K+ Sbjct: 101 VKGIGKKTAQKIVDYFGE-EALKR--IEEDHRSLLQVGGISEVRAKAIQDKLFKH 152 >gi|296450073|ref|ZP_06891835.1| probable competence protein [Clostridium difficile NAP08] gi|296878454|ref|ZP_06902460.1| probable competence protein [Clostridium difficile NAP07] gi|296261081|gb|EFH07914.1| probable competence protein [Clostridium difficile NAP08] gi|296430538|gb|EFH16379.1| probable competence protein [Clostridium difficile NAP07] Length = 234 Score = 41.6 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 LD + G+G +LQ F ++ E + ++ GI K I + Sbjct: 182 ELDSLPGVGEATANKILQHREENGQFSSI--------EEIKNVNGIGDKKYENIKD 229 >gi|281491501|ref|YP_003353481.1| DNA repair protein RadC [Lactococcus lactis subsp. lactis KF147] gi|281375219|gb|ADA64732.1| DNA repair protein RadC [Lactococcus lactis subsp. lactis KF147] Length = 226 Score = 41.6 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 +LQ F T+ + ++S L I GI +A I Sbjct: 51 ILQHFETLDNLRKASINELREISGIG--LAKSI 81 >gi|83312957|ref|YP_423221.1| NAD-dependent DNA ligase [Magnetospirillum magneticum AMB-1] gi|123726860|sp|Q2W0G3|DNLJ_MAGMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|82947798|dbj|BAE52662.1| NAD-dependent DNA ligase [Magnetospirillum magneticum AMB-1] Length = 698 Score = 41.6 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 7/55 (12%) Query: 563 IGPLRKRLLLQSFGTVKMISRS----SPE---TLASIEGISKKIACKIYNHFHKN 610 IG + L + +G+ + + E L SIE I +A + + F + Sbjct: 536 IGEATAKRLARHYGSFGAWRAAMLAGTEEARAELTSIEDIGPSVAGDLLDFFSEE 590 >gi|323694423|ref|ZP_08108594.1| competence protein ComEA [Clostridium symbiosum WAL-14673] gi|323501504|gb|EGB17395.1| competence protein ComEA [Clostridium symbiosum WAL-14673] Length = 230 Score = 41.6 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 8/57 (14%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A L + GIG R ++ +G I E + + GI + KI Sbjct: 175 AVKEQLMTLKGIGEARAEAIIAYRQEYGPFARI-----EDIMEVPGIKEAAFQKIKE 226 >gi|323487491|ref|ZP_08092785.1| competence protein CelA [Clostridium symbiosum WAL-14163] gi|323399173|gb|EGA91577.1| competence protein CelA [Clostridium symbiosum WAL-14163] Length = 230 Score = 41.6 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 8/57 (14%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A L + GIG R ++ +G I E + + GI + KI Sbjct: 175 AVKEQLMTLKGIGEARAEAIIAYRQEYGPFARI-----EDIMEVPGIKEAAFQKIKE 226 >gi|251799673|ref|YP_003014404.1| DNA integrity scanning protein DisA [Paenibacillus sp. JDR-2] gi|247547299|gb|ACT04318.1| protein of unknown function DUF147 [Paenibacillus sp. JDR-2] Length = 358 Score = 41.6 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 20/40 (50%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L++ FG + I ++ + L ++GI + A I + + Sbjct: 308 NLIERFGRLPHILMATIDELDEVDGIGEVRARAIKDGLKR 347 >gi|168704922|ref|ZP_02737199.1| competence protein ComEA helix-hairpin-helix repeat protein [Gemmata obscuriglobus UQM 2246] Length = 230 Score = 41.6 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 14/62 (22%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L ++ GIG + ++ F +V E L ++ GI + K+ + FH Sbjct: 66 ELVQVPGIGSKTAQSIVLHRQTHGPFRSV--------EELRNVRGIGAQTLEKVRHRFHT 117 Query: 610 NT 611 T Sbjct: 118 ET 119 >gi|90415813|ref|ZP_01223746.1| exodeoxyribonuclease IX [marine gamma proteobacterium HTCC2207] gi|90332187|gb|EAS47384.1| exodeoxyribonuclease IX [marine gamma proteobacterium HTCC2207] Length = 301 Score = 41.6 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 4/50 (8%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE--GISKKIACKIYNH 606 + G+G + LL F + I + L + G S K+A KI NH Sbjct: 189 GVPGVGAKTAKQLLLHFPDIDAILD-HLDQLQDLPIRGAS-KLADKIDNH 236 >gi|74316642|ref|YP_314382.1| NAD-dependent DNA ligase [Thiobacillus denitrificans ATCC 25259] gi|123745545|sp|Q3SL40|DNLJ_THIDA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|74056137|gb|AAZ96577.1| NAD-dependent DNA ligase [Thiobacillus denitrificans ATCC 25259] Length = 686 Score = 41.6 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 20/51 (39%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I +G R L + FG + + ++ L + + +A I F + Sbjct: 528 GIRNVGETTARDLARHFGALDALLGANETALLGVRDVGPIVAQSIAQFFAE 578 >gi|323464230|gb|ADX76383.1| DNA polymerase I [Staphylococcus pseudintermedius ED99] Length = 875 Score = 41.6 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 9/49 (18%) Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 D I G+ G LL FGTV+ + + + + G KK+ K+ Sbjct: 188 DNIPGVAGVGEKTAMKLLNQFGTVEGVY----DHIEEVSG--KKLKEKL 230 >gi|322389291|ref|ZP_08062851.1| NAD-dependent DNA ligase LigA [Streptococcus parasanguinis ATCC 903] gi|321144035|gb|EFX39453.1| NAD-dependent DNA ligase LigA [Streptococcus parasanguinis ATCC 903] Length = 652 Score = 41.6 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 28/54 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G ++LLQ F + ++ + PE +ASI+ + +A + +F + S Sbjct: 502 GIRHVGSKVSQILLQEFHDLDQLATADPERIASIDSLGMVVAESLKRYFAQEGS 555 Score = 39.7 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 8/61 (13%) Query: 559 EINGIGPLRKRLLLQSF-----GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I G+GP L F V I R + E L ++EG +K A K+Y + + Sbjct: 436 NITGLGPAVVEKL---FAAQLVEDVAGIYRLTVEDLLTLEGFKEKSAEKLYEAIQASKEN 492 Query: 614 T 614 + Sbjct: 493 S 493 >gi|312867643|ref|ZP_07727849.1| DNA ligase (NAD+) [Streptococcus parasanguinis F0405] gi|311096706|gb|EFQ54944.1| DNA ligase (NAD+) [Streptococcus parasanguinis F0405] Length = 652 Score = 41.6 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 28/54 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G ++LLQ F + ++ + PE +ASI+ + +A + +F + S Sbjct: 502 GIRHVGSKVSQILLQEFHDLDQLATADPERIASIDSLGMVVAESLKRYFAQEGS 555 Score = 39.7 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 8/61 (13%) Query: 559 EINGIGPLRKRLLLQSF-----GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I G+GP L F V I R + E L ++EG +K A K+Y + + Sbjct: 436 NITGLGPAVVEKL---FAAQLVEDVAGIYRLTVEDLLTLEGFKEKSAEKLYEAIQASKEN 492 Query: 614 T 614 + Sbjct: 493 S 493 >gi|312875390|ref|ZP_07735394.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2053A-b] gi|311089053|gb|EFQ47493.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2053A-b] Length = 672 Score = 41.6 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I+ +G RL+ + F + I S L I+ I + IA + +F + + Sbjct: 513 GIDHVGAKAARLIAKKFHDLNTIRECSIADLMQIDTIGQTIAESMVKYFEQQS 565 >gi|297622463|ref|YP_003703897.1| excinuclease ABC subunit C domain-containing protein [Truepera radiovictrix DSM 17093] gi|297163643|gb|ADI13354.1| Excinuclease ABC C subunit domain protein [Truepera radiovictrix DSM 17093] Length = 119 Score = 41.6 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%) Query: 10 PGVYQMLDIAGRVLYVGK-AYNLQKRIKSYMHS 41 PGVY++ D A RV+Y+G+ A ++ RI+ ++ Sbjct: 23 PGVYELADEAKRVIYIGQSAKDVPNRIRQHLAG 55 >gi|296046583|gb|ADG86433.1| NAD-dependent DNA ligase [Francisella novicida] Length = 673 Score = 41.6 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 24/51 (47%), Gaps = 3/51 (5%) Query: 562 GI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 GI G + L F T++ + +S ++L + + + +A + + F + Sbjct: 517 GIREAGEATTQNLANHFLTLENVINASIDSLTQVSDVGEIVATHVRSFFAE 567 >gi|237739010|ref|ZP_04569491.1| DNA repair protein radC [Fusobacterium sp. 2_1_31] gi|229423610|gb|EEO38657.1| DNA repair protein radC [Fusobacterium sp. 2_1_31] Length = 242 Score = 41.6 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 18/36 (50%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 + +L+ F ++ + ++ + L I+GI A I Sbjct: 63 KAILKEFKSLNRVFKADIKELEKIKGIGPISAILIK 98 >gi|73543092|ref|YP_297612.1| SMF protein [Ralstonia eutropha JMP134] gi|72120505|gb|AAZ62768.1| SMF protein [Ralstonia eutropha JMP134] Length = 379 Score = 41.6 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 GIGP+ RLLL +FG + + S E L+S+ + +K+A + Sbjct: 31 PGIGPVTVRLLLAAFGLPQQVFAQSVEALSSV--VPRKLASAVLAA 74 >gi|77360026|ref|YP_339601.1| NAD-dependent DNA ligase [Pseudoalteromonas haloplanktis TAC125] gi|123730523|sp|Q3IKB8|DNLJ_PSEHT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|76874937|emb|CAI86158.1| NAD-dependent DNA ligase [Pseudoalteromonas haloplanktis TAC125] Length = 673 Score = 41.6 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 24/51 (47%), Gaps = 3/51 (5%) Query: 562 GI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 GI G + L F T++ + +S ++L + + + +A + + F + Sbjct: 517 GIREAGEATTQNLANHFLTLENVINASIDSLTQVSDVGEIVATHVRSFFAE 567 >gi|67925673|ref|ZP_00518989.1| Helicase RecD/TraA [Crocosphaera watsonii WH 8501] gi|67852481|gb|EAM47924.1| Helicase RecD/TraA [Crocosphaera watsonii WH 8501] Length = 748 Score = 41.6 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 5/55 (9%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603 K S L I G+GP+ + ++ FG T+ I L + GI KK I Sbjct: 92 KYLGSGL--IKGVGPVTAKRIVAHFGLDTLD-IIEYEIGRLVEVPGIGKKRVQMI 143 >gi|329920507|ref|ZP_08277239.1| DNA ligase (NAD+) [Lactobacillus iners SPIN 1401G] gi|328936183|gb|EGG32636.1| DNA ligase (NAD+) [Lactobacillus iners SPIN 1401G] Length = 672 Score = 41.6 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I+ +G RL+ + F + I S L I+ I + IA + +F + + Sbjct: 513 GIDHVGAKAARLIAKKFHDLNTIRECSIADLMQIDTIGQTIAESMVKYFEQQS 565 >gi|241896587|ref|ZP_04783883.1| late competence protein required for DNA binding and uptake [Weissella paramesenteroides ATCC 33313] gi|241870179|gb|EER73930.1| late competence protein required for DNA binding and uptake [Weissella paramesenteroides ATCC 33313] Length = 226 Score = 41.6 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 8/46 (17%) Query: 557 LDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKI 599 L + GIG R + +++ G K + L + GI +K Sbjct: 176 LQNLPGIGEKRAQDIIKQRETMGGFK-----TISDLQQVNGIGEKT 216 >gi|146307768|ref|YP_001188233.1| NAD-dependent DNA ligase LigA [Pseudomonas mendocina ymp] gi|190359273|sp|A4XVY5|DNLJ_PSEMY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|145575969|gb|ABP85501.1| DNA ligase, NAD-dependent [Pseudomonas mendocina ymp] Length = 786 Score = 41.6 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 27/49 (55%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G ++L +S +++ + ++ PE L + I ++A +I++ F Sbjct: 535 GIPDVGEETAKVLARSLASLERVRQALPEVLTYLPDIGLEVAHEIHSFF 583 >gi|189499514|ref|YP_001958984.1| DNA polymerase I [Chlorobium phaeobacteroides BS1] gi|189494955|gb|ACE03503.1| DNA polymerase I [Chlorobium phaeobacteroides BS1] Length = 936 Score = 41.6 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 4/36 (11%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590 D I G IGP LL ++GT++ + + E LA Sbjct: 217 DNIPGAKGIGPKTASKLLTTYGTLENVL-AHIEELA 251 >gi|325068547|ref|ZP_08127220.1| competence protein ComEA helix-hairpin-helix repeat protein [Actinomyces oris K20] Length = 256 Score = 41.6 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNH 606 GT+ I+ +S L + GI +A +I + Sbjct: 194 GTI-NINTASASELEKLPGIGPALAQRIVEY 223 Score = 40.5 bits (93), Expect = 0.81, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 14/53 (26%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKK 598 A+ S L+++ GIGP + +++ F +S ++L + GI K Sbjct: 201 ASASELEKLPGIGPALAQRIVEYRDSHGPF--------ASVDSLTDVPGIGKA 245 >gi|126658250|ref|ZP_01729400.1| hypothetical protein CY0110_12662 [Cyanothece sp. CCY0110] gi|126620399|gb|EAZ91118.1| hypothetical protein CY0110_12662 [Cyanothece sp. CCY0110] Length = 276 Score = 41.6 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 6/85 (7%) Query: 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61 + +++PE G+Y ++D + R++Y+G++ N+ R K++ + + +I + Sbjct: 18 NLDELPEYSGIYFVIDSSDRMIYIGQSENILNRWKNHHRKLQIEEKHQEIPIRIAWKSW- 76 Query: 62 VTCTEVEAL-LLEANMIKRLKPRFN 85 E L + E I P N Sbjct: 77 ----NKEDLKIAEKYYINHYHPLLN 97 >gi|111223170|ref|YP_713964.1| putative 5'-3' exonuclease [Frankia alni ACN14a] gi|111150702|emb|CAJ62403.1| putative 5'-3' exonuclease [Frankia alni ACN14a] Length = 389 Score = 41.6 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 13/28 (46%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584 L + GIG LL FG++ I + Sbjct: 249 LPGVAGIGAKTAAALLNRFGSLAAILAA 276 >gi|329948298|ref|ZP_08295142.1| hypothetical protein HMPREF9056_03062 [Actinomyces sp. oral taxon 170 str. F0386] gi|328522822|gb|EGF49930.1| hypothetical protein HMPREF9056_03062 [Actinomyces sp. oral taxon 170 str. F0386] Length = 356 Score = 41.6 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 28/52 (53%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L +I + + R +++ +G+++ + ++ E L ++EG+ + A + + Sbjct: 292 ILSKIPRLPVVTARAVVEQWGSLQGVLGATIEELEAVEGVGAQRARTLRDGL 343 >gi|326773921|ref|ZP_08233203.1| DNA-binding protein [Actinomyces viscosus C505] gi|326636060|gb|EGE36964.1| DNA-binding protein [Actinomyces viscosus C505] Length = 388 Score = 41.6 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 28/52 (53%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L +I + + R +++ +G+++ + ++ E L ++EG+ + A + + Sbjct: 324 ILSKIPRLPVVTARAVVEQWGSLQGVLGATIEELEAVEGVGAQRARTLRDGL 375 >gi|325479360|gb|EGC82456.1| helicase, RecD/TraA family [Anaerococcus prevotii ACS-065-V-Col13] Length = 719 Score = 41.6 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 3/47 (6%) Query: 559 EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603 + GIG + + FG ++ ++ +P L +EGI KK I Sbjct: 86 NLKGIGKKTAKAIYDKFGKESIDIVYN-NPNQLLEVEGIGKKKLEDI 131 >gi|325911416|ref|ZP_08173828.1| DNA ligase (NAD+) [Lactobacillus iners UPII 143-D] gi|325476766|gb|EGC79920.1| DNA ligase (NAD+) [Lactobacillus iners UPII 143-D] Length = 672 Score = 41.6 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I+ +G RL+ + F + I S L I+ I + IA + +F + + Sbjct: 513 GIDHVGAKAARLIAKKFHDLNTIRECSIADLMQIDTIGQTIAESMVKYFEQQS 565 >gi|325067978|ref|ZP_08126651.1| DNA integrity scanning protein DisA [Actinomyces oris K20] Length = 356 Score = 41.6 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 28/52 (53%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L +I + + R +++ +G+++ + ++ E L ++EG+ + A + + Sbjct: 292 ILSKIPRLPVVTARAVVEQWGSLQGVLGATIEELEAVEGVGAQRARTLRDGL 343 >gi|320531191|ref|ZP_08032177.1| DNA integrity scanning family protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320136594|gb|EFW28556.1| DNA integrity scanning family protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 356 Score = 41.6 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 28/52 (53%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L +I + + R +++ +G+++ + ++ E L ++EG+ + A + + Sbjct: 292 ILSKIPRLPVVTARAVVEQWGSLQGVLGATIEELEAVEGVGAQRARTLRDGL 343 >gi|319892738|ref|YP_004149613.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03] gi|317162434|gb|ADV05977.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03] Length = 875 Score = 41.6 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 9/49 (18%) Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 D I G+ G LL FGTV+ + + + + G KK+ K+ Sbjct: 188 DNIPGVAGVGEKTAMKLLNQFGTVEGVY----DHIEEVSG--KKLKEKL 230 >gi|309808880|ref|ZP_07702761.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 01V1-a] gi|308167878|gb|EFO70015.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 01V1-a] Length = 672 Score = 41.6 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I+ +G RL+ + F + I S L I+ I + IA + +F + + Sbjct: 513 GIDHVGAKAARLIAKKFHDLNTIRECSIADLMQIDTIGQTIAESMVKYFEQQS 565 >gi|294494932|ref|YP_003541425.1| DNA repair and recombination protein RadA [Methanohalophilus mahii DSM 5219] gi|292665931|gb|ADE35780.1| DNA repair and recombination protein RadA [Methanohalophilus mahii DSM 5219] Length = 325 Score = 41.6 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKI 603 L+E++ +GP + L + + +V+ ++ +SP L + I + A KI Sbjct: 6 LEELDHVGPATAQKLNDAGYNSVEAVAVASPSELVATAEIGESTAAKI 53 >gi|257465001|ref|ZP_05629372.1| Holliday junction DNA helicase RuvA [Actinobacillus minor 202] gi|257450661|gb|EEV24704.1| Holliday junction DNA helicase RuvA [Actinobacillus minor 202] Length = 200 Score = 41.6 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 13/83 (15%) Query: 533 LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET- 588 +R++AH FA +++ + + L + NG+GP +L + +V + + Sbjct: 53 VREDAHLLFGFA-----QKQDRMLFRELIKTNGVGPKLALAILSAM-SVSQFASAVENEE 106 Query: 589 ---LASIEGISKKIACKIYNHFH 608 L I GI +K A ++ Sbjct: 107 LAKLTKIPGIGRKTAERLLVELK 129 >gi|241889770|ref|ZP_04777068.1| holliday junction DNA helicase RuvA [Gemella haemolysans ATCC 10379] gi|241863392|gb|EER67776.1| holliday junction DNA helicase RuvA [Gemella haemolysans ATCC 10379] Length = 193 Score = 41.6 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 28/82 (34%), Gaps = 14/82 (17%) Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGT-----VKMISRSSPETLASIEGISKKIAC 601 + +K + L ++ G+GP +L G + I L GI KK A Sbjct: 62 NKDQKKVFLLLLKVKGVGPKSALAILA--GGTSEEIIGAIENQDVTYLTKFPGIGKKSAQ 119 Query: 602 KIYNHFHK-------NTSHTPT 616 +I N S PT Sbjct: 120 QIILDLQGKVDFSMTNISSAPT 141 >gi|300775482|ref|ZP_07085343.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910] gi|300505509|gb|EFK36646.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910] Length = 944 Score = 41.6 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 18/76 (23%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA-----SIE-----GI-SKKIACKI 603 D I G +G L+ FGT++ + ++ + L +E GI SKK+A I Sbjct: 195 DNIPGLEGVGEKTAMKFLKEFGTIENLL-ANTDKLKGKLKEKVEASAERGILSKKLATII 253 Query: 604 YNH---FHKNTSHTPT 616 + FH+ T Sbjct: 254 CDAPVEFHQEQYDLET 269 >gi|225868755|ref|YP_002744703.1| DNA ligase [Streptococcus equi subsp. zooepidemicus] gi|225702031|emb|CAW99626.1| DNA ligase [Streptococcus equi subsp. zooepidemicus] Length = 652 Score = 41.6 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 29/56 (51%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G RL+L+++G ++ + + E LA I+G+ I + +F ++ + Sbjct: 502 GIRHVGAKASRLILETYGDLETLLSVTAEELAQIDGLGLVIGQSLVQYFQQDQAAQ 557 Score = 40.9 bits (94), Expect = 0.72, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 6/59 (10%) Query: 560 INGIGPLRKRLL----LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I G+GP L L V I R S E L +++GI +K A K+ ++ +++ Sbjct: 437 IAGLGPAVVEKLYSAGLVH--DVADIYRLSLEDLLTLDGIKEKSAEKLLAAIEQSKANS 493 >gi|116750704|ref|YP_847391.1| DNA repair protein RadC [Syntrophobacter fumaroxidans MPOB] gi|116699768|gb|ABK18956.1| DNA repair protein RadC [Syntrophobacter fumaroxidans MPOB] Length = 225 Score = 41.6 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 26/80 (32%) Query: 542 ITTHRKR-RKKAAYSPLDE--------------INGIGPLRK------RLLLQSFGTVKM 580 HR R R++ S L I R+ + LL FG++ Sbjct: 5 NEGHRARLRERFGRSGLSGFHDHEVLELLLSYAIP-----RRDVKPLAKDLLSRFGSLAA 59 Query: 581 ISRSSPETLASIEGISKKIA 600 + + P L ++ GI A Sbjct: 60 VLDAPPAVLRNVPGIGPNAA 79 >gi|307207093|gb|EFN84902.1| DNA excision repair protein ERCC-1 [Harpegnathos saltator] Length = 193 Score = 41.6 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 21/39 (53%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 LL +FGT+ I R+ P TLA G A K+Y H+ Sbjct: 148 LLSTFGTLDDIVRAQPNTLALCPGFGLHKAQKLYKALHE 186 >gi|294783065|ref|ZP_06748389.1| DNA ligase, NAD-dependent [Fusobacterium sp. 1_1_41FAA] gi|294479943|gb|EFG27720.1| DNA ligase, NAD-dependent [Fusobacterium sp. 1_1_41FAA] Length = 696 Score = 41.6 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 26/55 (47%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I IG + ++L ++ + + + E L SIEGI + A +I F K + Sbjct: 537 GIPFIGKVASKVLAKASKNIDKLMSMTFEELTSIEGIGEIAANEIIVFFKKEKTQ 591 >gi|118576306|ref|YP_876049.1| superfamily II helicase [Cenarchaeum symbiosum A] gi|118194827|gb|ABK77745.1| superfamily II helicase [Cenarchaeum symbiosum A] Length = 604 Score = 41.6 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Query: 567 RKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 ++ +LL S G T+ + S E LA I+GI +K A I + + Sbjct: 558 KRAMLLYSMGMTTLDSLRNISEEELAEIKGIGQKCAKSIKAYLQSD 603 >gi|30248943|ref|NP_841013.1| putative DNA transport competence protein, ComEA [Nitrosomonas europaea ATCC 19718] gi|30138560|emb|CAD84851.1| putative DNA transport competence protein, ComEA [Nitrosomonas europaea ATCC 19718] Length = 120 Score = 41.6 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 8/46 (17%) Query: 557 LDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKI 599 L+ + G+GP++ + +++ +G K S E LA+++GI I Sbjct: 58 LESVKGLGPVKAKAIIEYRNKYGMFK-----SVEELANVKGIGAGI 98 >gi|257869946|ref|ZP_05649599.1| late competence protein ComEA [Enterococcus gallinarum EG2] gi|257804110|gb|EEV32932.1| late competence protein ComEA [Enterococcus gallinarum EG2] Length = 198 Score = 41.6 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 18/62 (29%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A S L E+ GIG + ++ F TV+ + + GI K Y Sbjct: 142 ADSSQLQELPGIGAKKAEAIIAYREEKGFFKTVEEVK--------EVSGIGPKT----YE 189 Query: 606 HF 607 Sbjct: 190 AL 191 >gi|74318231|ref|YP_315971.1| DNA recombination protein, RuvA [Thiobacillus denitrificans ATCC 25259] gi|90146182|sp|Q3SGT1|RUVA_THIDA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|74057726|gb|AAZ98166.1| DNA recombination protein, RuvA [Thiobacillus denitrificans ATCC 25259] Length = 191 Score = 41.6 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 16/65 (24%) Query: 555 SPLDEINGIGPLRKRLLLQS------------FGTVKMISRSSPETLASIEGISKKIACK 602 S + GIG LL FG+ + R++ L + GI K A Sbjct: 33 STFYNLPGIGEK--VALLTHLAIREDAHLLYGFGS--EVERAAFRELLKVSGIGAKTALS 88 Query: 603 IYNHF 607 + + Sbjct: 89 VLSGL 93 Score = 38.2 bits (87), Expect = 4.7, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 7/63 (11%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRSSPET----LASIEGISKKIACKIYN 605 +AA+ L +++GIG +L G +V +S + + + GI KK A ++ Sbjct: 69 RAAFRELLKVSGIGAKTALSVLS--GLSVNDLSAAIAAQEIGRIVKVPGIGKKTAERLLL 126 Query: 606 HFH 608 Sbjct: 127 ELK 129 >gi|16800587|ref|NP_470855.1| hypothetical protein lin1519 [Listeria innocua Clip11262] gi|16413992|emb|CAC96750.1| comEA [Listeria innocua Clip11262] Length = 200 Score = 41.6 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 A L ++ GIG + +++ + + + + E L ++ GI +K K+ + Sbjct: 144 ATKIDLQQVPGIGDSKATAIIEY-REKEGLFQ-TIEDLKNVTGIGEKTVEKLKEYL 197 >gi|15672989|ref|NP_267163.1| DNA repair protein RadC [Lactococcus lactis subsp. lactis Il1403] gi|13878681|sp|Q9CGT5|Y1007_LACLA RecName: Full=UPF0758 protein LL1007 gi|12723955|gb|AAK05105.1|AE006335_1 DNA repair protein RadC [Lactococcus lactis subsp. lactis Il1403] gi|326406552|gb|ADZ63623.1| DNA repair protein RadC [Lactococcus lactis subsp. lactis CV56] Length = 226 Score = 41.6 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 +LQ F T+ + ++S L I GI +A I Sbjct: 51 ILQHFETLDNLRKASINELREISGIG--LAKSI 81 >gi|325194039|emb|CCA28137.1| DNA excision repair protein ERCC1 putative [Albugo laibachii Nc14] Length = 293 Score = 41.6 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 21/39 (53%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 LL +FGT+K + ++PE +A G+ K + F + Sbjct: 250 LLSTFGTMKNLMNATPEEMAVCPGLGAKKLKNLLKAFQE 288 >gi|296331651|ref|ZP_06874120.1| DNA repair protein RadC [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675390|ref|YP_003867062.1| putative DNA repair protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296151246|gb|EFG92126.1| DNA repair protein RadC [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413634|gb|ADM38753.1| putative DNA repair protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 231 Score = 41.6 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 21/37 (56%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 LL+SF ++++ +S E L+SI GI A +I Sbjct: 56 RLLRSFDGLRLLKEASVEELSSIRGIGMVKAVQILAA 92 >gi|323342976|ref|ZP_08083207.1| NAD-dependent DNA ligase LigA [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463040|gb|EFY08235.1| NAD-dependent DNA ligase LigA [Erysipelothrix rhusiopathiae ATCC 19414] Length = 659 Score = 41.6 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 21/49 (42%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G +L + T+ + ++ + L I+ I IA + + F Sbjct: 508 GIRHVGAKTSNVLAAYYKTIASLMDATYDELIEIDEIGGVIAQSVVSFF 556 >gi|193212192|ref|YP_001998145.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327] gi|193085669|gb|ACF10945.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327] Length = 950 Score = 41.6 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 4/36 (11%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590 D I G IGP LL+ +G++ I + + L Sbjct: 221 DNIPGAKGIGPKTASSLLEEYGSLDNIY-AHLDDLK 255 >gi|33861544|ref|NP_893105.1| helix-hairpin-helix DNA-binding motif-containing protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634121|emb|CAE19447.1| Helix-hairpin-helix DNA-binding motif class 1 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 110 Score = 41.6 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 560 INGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605 I G+G ++ F T K I+ + E L ++ G+ + K+ N Sbjct: 62 IPGVGAKSAEAFYKAGFKTPKSITSAKDEVLLAVPGVGINLVKKLKN 108 >gi|260551921|ref|ZP_05825783.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624] gi|260405324|gb|EEW98819.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624] Length = 923 Score = 41.6 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 7/49 (14%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + G+G LL +GT+ I +A+++ + K++ I ++ Sbjct: 187 GVPGVGAKTAAKLLTEYGTLDNI-------IANVDQLKGKLSQNIKDNL 228 >gi|213156072|ref|YP_002318117.1| DNA polymerase I [Acinetobacter baumannii AB0057] gi|301344695|ref|ZP_07225436.1| DNA polymerase I [Acinetobacter baumannii AB056] gi|301595519|ref|ZP_07240527.1| DNA polymerase I [Acinetobacter baumannii AB059] gi|213055232|gb|ACJ40134.1| DNA polymerase I [Acinetobacter baumannii AB0057] Length = 923 Score = 41.6 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 7/49 (14%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + G+G LL +GT+ I +A+++ + K++ I ++ Sbjct: 187 GVPGVGAKTAAKLLTEYGTLDNI-------IANVDQLKGKLSQNIKDNL 228 >gi|169634321|ref|YP_001708057.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter baumannii SDF] gi|169153113|emb|CAP02187.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter baumannii] Length = 923 Score = 41.6 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 7/49 (14%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + G+G LL +GT+ I +A+++ + K++ I ++ Sbjct: 187 GVPGVGAKTAAKLLTEYGTLDNI-------IANVDQLKGKLSQNIKDNL 228 >gi|169797137|ref|YP_001714930.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter baumannii AYE] gi|215484600|ref|YP_002326835.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294] gi|301510197|ref|ZP_07235434.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB058] gi|332856876|ref|ZP_08436285.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013150] gi|332867222|ref|ZP_08437487.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013113] gi|169150064|emb|CAM87958.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter baumannii AYE] gi|213987981|gb|ACJ58280.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294] gi|332726930|gb|EGJ58435.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013150] gi|332734161|gb|EGJ65293.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013113] Length = 923 Score = 41.6 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 7/49 (14%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + G+G LL +GT+ I +A+++ + K++ I ++ Sbjct: 187 GVPGVGAKTAAKLLTEYGTLDNI-------IANVDQLKGKLSQNIKDNL 228 >gi|157369207|ref|YP_001477196.1| DNA polymerase IV [Serratia proteamaculans 568] gi|189027680|sp|A8GAC8|DPO4_SERP5 RecName: Full=DNA polymerase IV; Short=Pol IV gi|157320971|gb|ABV40068.1| DNA-directed DNA polymerase [Serratia proteamaculans 568] Length = 353 Score = 41.6 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 29/80 (36%) Query: 556 PLDEINGIGPLRKR-------------------LLLQSFGTVKMI----------SRSSP 586 PL +I G+G + + LL+ FG + SP Sbjct: 177 PLSKIPGVGKVTAKRLEEVGLITCADVQQYDLAALLKRFGKFGRVLWERCQGIDLREVSP 236 Query: 587 ETLASIEGISKKIACKIYNH 606 E L G+ + +A I++ Sbjct: 237 ERLRKSVGVERTLAEDIHDW 256 >gi|325143946|gb|EGC66256.1| DNA ligase, NAD-dependent [Neisseria meningitidis M01-240013] gi|325206489|gb|ADZ01942.1| DNA ligase, NAD-dependent [Neisseria meningitidis M04-240196] Length = 841 Score = 41.6 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FGT++ + R+ LA + I +A I + F + Sbjct: 606 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAEQQA 661 >gi|325135742|gb|EGC58354.1| DNA ligase, NAD-dependent [Neisseria meningitidis M0579] Length = 841 Score = 41.6 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FGT++ + R+ LA + I +A I + F + Sbjct: 606 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAEQQA 661 >gi|325129804|gb|EGC52612.1| DNA ligase, NAD-dependent [Neisseria meningitidis OX99.30304] Length = 841 Score = 41.6 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FGT++ + R+ LA + I +A I + F + Sbjct: 606 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAEQQA 661 >gi|323141560|ref|ZP_08076445.1| DNA-directed DNA polymerase [Phascolarctobacterium sp. YIT 12067] gi|322413972|gb|EFY04806.1| DNA-directed DNA polymerase [Phascolarctobacterium sp. YIT 12067] Length = 878 Score = 41.6 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 24/108 (22%) Query: 509 KFFVKKGEALVL-NMRDPILYF---IQRLR--DEAHRFAITTHRKRRKKAAYSPL----- 557 + L L + R + Y I ++ DEA FA + K L Sbjct: 141 IIVTGDRDELQLIDKRTKVFYTKRGISDIQVFDEA-EFAANY-EGLQPKQLI-ELKGLMG 197 Query: 558 ---DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 D I G+ GP L++ +G V+ + E + + G S K Sbjct: 198 DTSDNIPGVPGVGPKTAMKLIKEYGNVETV----LENIEKVSGKSLKT 241 >gi|308388851|gb|ADO31171.1| DNA ligase [Neisseria meningitidis alpha710] gi|325202538|gb|ADY97992.1| DNA ligase, NAD-dependent [Neisseria meningitidis M01-240149] gi|325207712|gb|ADZ03164.1| DNA ligase, NAD-dependent [Neisseria meningitidis NZ-05/33] Length = 841 Score = 41.6 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FGT++ + R+ LA + I +A I + F + Sbjct: 606 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAEQQA 661 >gi|297250739|ref|ZP_06934237.1| DNA ligase, NAD-dependent [Neisseria polysaccharea ATCC 43768] gi|296838226|gb|EFH22164.1| DNA ligase, NAD-dependent [Neisseria polysaccharea ATCC 43768] Length = 539 Score = 41.6 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FGT++ + R+ LA + I +A I + F + Sbjct: 304 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAEQQA 359 >gi|254670337|emb|CBA05747.1| DNA ligase [Neisseria meningitidis alpha153] Length = 841 Score = 41.6 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FGT++ + R+ LA + I +A I + F + Sbjct: 606 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAEQQA 661 >gi|239500679|ref|ZP_04659989.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB900] Length = 923 Score = 41.6 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 7/49 (14%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + G+G LL +GT+ I +A+++ + K++ I ++ Sbjct: 187 GVPGVGAKTAAKLLTEYGTLDNI-------IANVDQLKGKLSQNIKDNL 228 >gi|228993070|ref|ZP_04152993.1| Competence protein ComEA helix-hairpin-helix repeat protein [Bacillus pseudomycoides DSM 12442] gi|228766718|gb|EEM15358.1| Competence protein ComEA helix-hairpin-helix repeat protein [Bacillus pseudomycoides DSM 12442] Length = 199 Score = 41.6 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 8/57 (14%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A+ L++I GIGP + +L+ G + + E L ++GI +K KI + Sbjct: 143 ASKEQLEKITGIGPRKAENILKYREGHGPFQKM-----EDLLEVDGIGEKSLEKIKD 194 >gi|227503896|ref|ZP_03933945.1| NAD-dependent DNA ligase LigA [Corynebacterium striatum ATCC 6940] gi|227199519|gb|EEI79567.1| NAD-dependent DNA ligase LigA [Corynebacterium striatum ATCC 6940] Length = 680 Score = 41.6 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +GP+ R L + +++ + +S LA +G+ IA F ++ Sbjct: 525 SIRHVGPIAARALATRYRSMEALRAASESELADTDGVGGIIAASFKAWFEED 576 >gi|127513305|ref|YP_001094502.1| DNA ligase, NAD-dependent [Shewanella loihica PV-4] gi|166216242|sp|A3QFJ5|DNLJ_SHELP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|126638600|gb|ABO24243.1| DNA ligase, NAD-dependent [Shewanella loihica PV-4] Length = 669 Score = 41.6 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 20/45 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +G L F T++ + ++ ET ++ + +A + + F Sbjct: 520 VGEATAANLANYFKTLEHLKQADAETFMKVDDVGVIVAQHLVHFF 564 >gi|189347498|ref|YP_001944027.1| DNA ligase, NAD-dependent [Chlorobium limicola DSM 245] gi|254781283|sp|B3EFT6|DNLJ_CHLL2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|189341645|gb|ACD91048.1| DNA ligase, NAD-dependent [Chlorobium limicola DSM 245] Length = 673 Score = 41.6 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 7/72 (9%) Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLL---LQSFGTVKMISRSSPETLASIEGISK 597 AI R + L I +G R L F ++ + + LA + I Sbjct: 505 AIEESRTKSYDRLLYAL-GIRHVGQATARELAGAYPYFASLH---EAGEQELAEVPDIGP 560 Query: 598 KIACKIYNHFHK 609 +A I + F K Sbjct: 561 VVARSIIDFFSK 572 >gi|110637848|ref|YP_678055.1| DNA processing protein [Cytophaga hutchinsonii ATCC 33406] gi|110280529|gb|ABG58715.1| DNA processing protein [Cytophaga hutchinsonii ATCC 33406] Length = 364 Score = 41.6 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH--FHKNTS 612 I G+G + L+ G + I ++ L +I GI IY+ H+ S Sbjct: 13 IPGVGAATTKTLISYCGCAEQIFKTPKGKLKNIPGIGAVTVDNIYSASVLHEAES 67 >gi|307138727|ref|ZP_07498083.1| hypothetical protein EcolH7_11466 [Escherichia coli H736] gi|331642688|ref|ZP_08343823.1| putative chaperonin [Escherichia coli H736] gi|331039486|gb|EGI11706.1| putative chaperonin [Escherichia coli H736] Length = 648 Score = 41.6 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 46/137 (33%), Gaps = 42/137 (30%) Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556 IAK ++ E RD + L+D A R++ Sbjct: 473 IAKRAMLEKMKDEILGLPEEE----KRD-----LAALQDTA-----------RERQKQKF 512 Query: 557 LD-------EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH- 606 L+ I G+GP RK L +SFG T ++R S ++G + + + Sbjct: 513 LEGFFIDVASIPGVGPARKAAL-RSFGIETAADVTRRSV---KQVKGFGDHLTQAVIDWK 568 Query: 607 --------FHKNTSHTP 615 F N + TP Sbjct: 569 ASCERRFVFRPNEAVTP 585 >gi|296876694|ref|ZP_06900742.1| NAD-dependent DNA ligase LigA [Streptococcus parasanguinis ATCC 15912] gi|296432196|gb|EFH17995.1| NAD-dependent DNA ligase LigA [Streptococcus parasanguinis ATCC 15912] Length = 652 Score = 41.6 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 29/54 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +G ++LLQ F + ++ + PE +ASI+ + +A + ++F + S Sbjct: 502 GIRHVGSKVSQILLQEFHDIDQLATADPERIASIDSLGMVVAESLKSYFAQEGS 555 Score = 39.7 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 8/61 (13%) Query: 559 EINGIGPLRKRLLLQSF-----GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I G+GP L F V I R + E L ++EG +K A K+Y + + Sbjct: 436 NITGLGPAVVEKL---FAAQLVEDVAGIYRLTVEDLLTLEGFKEKSAEKLYEAIQASKEN 492 Query: 614 T 614 + Sbjct: 493 S 493 >gi|258512697|ref|YP_003186131.1| DNA integrity scanning protein DisA [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479423|gb|ACV59742.1| DNA integrity scanning, DisA, linker region [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 359 Score = 41.6 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 18/40 (45%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ FG + I ++S L +EG+ A I N Sbjct: 307 IENLVEHFGVLSNILKASMADLDKVEGVGPVRARMIQNGL 346 >gi|187933408|ref|YP_001884449.1| DNA integrity scanning protein DisA [Clostridium botulinum B str. Eklund 17B] gi|226729438|sp|B2TIF1|DISA_CLOBB RecName: Full=DNA integrity scanning protein disA gi|187721561|gb|ACD22782.1| DNA integrity scanning protein DisA [Clostridium botulinum B str. Eklund 17B] Length = 354 Score = 41.6 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 18/42 (42%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L++ F + + + + L +EGI + A I + + Sbjct: 302 IENLIKEFKELNSVIEADIDELDIVEGIGEARAKAIKDGLKR 343 >gi|88192676|pdb|2CSB|A Chain A, Crystal Structure Of Topoisomerase V From Methanopyrus Kandleri (61 Kda Fragment) gi|88192677|pdb|2CSB|B Chain B, Crystal Structure Of Topoisomerase V From Methanopyrus Kandleri (61 Kda Fragment) Length = 519 Score = 41.6 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 12/72 (16%) Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS----SPE 587 RL +EA+R A+ + L + G+G LL++FG + + + E Sbjct: 396 RLSEEAYRAAVE--------IQLAELTKKEGVGRKTAERLLRAFGNPERVKQLAREFEIE 447 Query: 588 TLASIEGISKKI 599 LAS+EG+ +++ Sbjct: 448 KLASVEGVGERV 459 Score = 40.5 bits (93), Expect = 0.91, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 14/36 (38%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 L I GI R LL+ +G + + E L Sbjct: 469 SLISIRGIDRERAERLLKKYGGYSKVREAGVEELRE 504 >gi|88192678|pdb|2CSD|A Chain A, Crystal Structure Of Topoisomerase V (61 Kda Fragment) gi|88192679|pdb|2CSD|B Chain B, Crystal Structure Of Topoisomerase V (61 Kda Fragment) Length = 519 Score = 41.6 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 12/72 (16%) Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS----SPE 587 RL +EA+R A+ + L + G+G LL++FG + + + E Sbjct: 396 RLSEEAYRAAVE--------IQLAELTKKEGVGRKTAERLLRAFGNPERVKQLAREFEIE 447 Query: 588 TLASIEGISKKI 599 LAS+EG+ +++ Sbjct: 448 KLASVEGVGERV 459 Score = 40.5 bits (93), Expect = 0.91, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 14/36 (38%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 L I GI R LL+ +G + + E L Sbjct: 469 SLISIRGIDRERAERLLKKYGGYSKVREAGVEELRE 504 >gi|242309633|ref|ZP_04808788.1| competence protein ComEA [Helicobacter pullorum MIT 98-5489] gi|239523634|gb|EEQ63500.1| competence protein ComEA [Helicobacter pullorum MIT 98-5489] Length = 94 Score = 41.6 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 3/53 (5%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 KA+ L I GIG + + ++ + S + L +I+G KI KI Sbjct: 36 KASKEELMSIKGIGEAKAQAIIDY---REKTPLKSIDDLKNIKGFGPKIIEKI 85 Score = 39.3 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNH 606 FG V ++++S E L SI+GI + A I ++ Sbjct: 29 FGAVD-LNKASKEELMSIKGIGEAKAQAIIDY 59 >gi|256371863|ref|YP_003109687.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331] gi|256008447|gb|ACU54014.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331] Length = 886 Score = 41.6 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 L + GIGP LL F +++ I + + L++ Sbjct: 203 LPGVPGIGPKTAAALLDRFESIEGIL-AHLDALSA 236 >gi|184156936|ref|YP_001845275.1| DNA polymerase I [Acinetobacter baumannii ACICU] gi|332873987|ref|ZP_08441922.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6014059] gi|183208530|gb|ACC55928.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Acinetobacter baumannii ACICU] gi|322506832|gb|ADX02286.1| DNA polymerase I [Acinetobacter baumannii 1656-2] gi|323516701|gb|ADX91082.1| DNA polymerase I [Acinetobacter baumannii TCDC-AB0715] gi|332737728|gb|EGJ68620.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6014059] Length = 923 Score = 41.6 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 7/49 (14%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + G+G LL +GT+ I +A+++ + K++ I ++ Sbjct: 187 GVPGVGAKTAAKLLTEYGTLDNI-------IANVDQLKGKLSQNIKDNL 228 >gi|297198471|ref|ZP_06915868.1| 5'-3' exonuclease [Streptomyces sviceus ATCC 29083] gi|297147105|gb|EDY61418.2| 5'-3' exonuclease [Streptomyces sviceus ATCC 29083] Length = 306 Score = 41.6 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 12/28 (42%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584 L + GIG LL FG + I + Sbjct: 202 LPGVPGIGEKTAAKLLDQFGDLAGIMAA 229 >gi|291547495|emb|CBL20603.1| helicase, putative, RecD/TraA family [Ruminococcus sp. SR1/5] Length = 876 Score = 41.6 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 5/61 (8%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFH 608 K S L + G+GP + +++ FG T+ +I +P+ L + GI K +I + Sbjct: 83 KYLGSGL--VKGVGPKFAKRIVEKFGKDTLDVIEE-TPDELLKVSGIGKVRVDRIKTSWQ 139 Query: 609 K 609 + Sbjct: 140 E 140 >gi|290961715|ref|YP_003492897.1| 5'-3' exonuclease [Streptomyces scabiei 87.22] gi|260651241|emb|CBG74363.1| putative 5'-3' exonuclease [Streptomyces scabiei 87.22] Length = 316 Score = 41.6 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 12/28 (42%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584 L + GIG LL FG + I + Sbjct: 212 LPGVPGIGEKTAAKLLDQFGDLAGIMAA 239 >gi|254822707|ref|ZP_05227708.1| DNA integrity scanning protein DisA [Mycobacterium intracellulare ATCC 13950] Length = 360 Score = 41.6 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616 L++SFGT++ + +S L S++GI A + + T T Sbjct: 311 LVRSFGTLQNVLAASASDLQSVDGIGAMWARHVREGLSQLAESTIT 356 >gi|240949538|ref|ZP_04753878.1| Holliday junction DNA helicase RuvA [Actinobacillus minor NM305] gi|240296111|gb|EER46772.1| Holliday junction DNA helicase RuvA [Actinobacillus minor NM305] Length = 200 Score = 41.6 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 13/83 (15%) Query: 533 LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET- 588 +R++AH FA +++ + + L + NG+GP +L + +V + + Sbjct: 53 VREDAHLLFGFA-----QKQDRTLFRELIKTNGVGPKLALAILSAM-SVSQFANAVENEE 106 Query: 589 ---LASIEGISKKIACKIYNHFH 608 L I GI +K A ++ Sbjct: 107 LAKLTKIPGIGRKTAERLLVELK 129 >gi|213406491|ref|XP_002174017.1| mating-type switching protein swi10 [Schizosaccharomyces japonicus yFS275] gi|212002064|gb|EEB07724.1| mating-type switching protein swi10 [Schizosaccharomyces japonicus yFS275] Length = 251 Score = 41.6 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 5/57 (8%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615 I GI L+ FG++K ++ E L I+G K+ +H P Sbjct: 179 SIRGINKSDCLSLIAHFGSMKRALTATQEELEQIDGFGPT---KVRRFL--EATHQP 230 >gi|210630510|ref|ZP_03296493.1| hypothetical protein COLSTE_00378 [Collinsella stercoris DSM 13279] gi|210160444|gb|EEA91415.1| hypothetical protein COLSTE_00378 [Collinsella stercoris DSM 13279] Length = 756 Score = 41.6 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 23/49 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G ++ Q F TV ++ +S E +A EGI KIA + Sbjct: 583 GIRHVGKSVAEVIAQRFLTVDALAAASEEDIAGCEGIGPKIAASVRQFL 631 >gi|193076392|gb|ABO11061.2| DNA polymerase I [Acinetobacter baumannii ATCC 17978] Length = 923 Score = 41.6 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 7/49 (14%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + G+G LL +GT+ I +A+++ + K++ I ++ Sbjct: 187 GVPGVGAKTAAKLLTEYGTLDNI-------IANVDQLKGKLSQNIKDNL 228 >gi|320528995|ref|ZP_08030087.1| helicase, RecD/TraA family [Selenomonas artemidis F0399] gi|320138625|gb|EFW30515.1| helicase, RecD/TraA family [Selenomonas artemidis F0399] Length = 724 Score = 41.2 bits (95), Expect = 0.45, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603 I+G+GP R ++ FG + +I + P L + GI K KI Sbjct: 101 IDGVGPAMARRIVDRFGAKSFAIIETA-PHRLKEVPGIGAKTLEKI 145 >gi|224369899|ref|YP_002604063.1| LigA1 [Desulfobacterium autotrophicum HRM2] gi|254781310|sp|C0QJ86|DNLJ_DESAH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|223692616|gb|ACN15899.1| LigA1 [Desulfobacterium autotrophicum HRM2] Length = 685 Score = 41.2 bits (95), Expect = 0.45, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 564 GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF-HKNTSHT 614 G +LL +F T++ + ++S E L +IEG+ K A + F + + T Sbjct: 532 GESAAQLLSSTFFTLEALLKASAEALGAIEGVGPKTADSVVAFFANPDNQET 583 >gi|19553005|ref|NP_601007.1| hypothetical protein NCgl1730 [Corynebacterium glutamicum ATCC 13032] gi|62390682|ref|YP_226084.1| nuclease subunit of the excinuclease complex [Corynebacterium glutamicum ATCC 13032] gi|21324573|dbj|BAB99197.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032] gi|41326020|emb|CAF20183.1| putative nuclease subunit of the excinuclease complex [Corynebacterium glutamicum ATCC 13032] Length = 503 Score = 41.2 bits (95), Expect = 0.45, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 4/78 (5%) Query: 12 VYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMI----SQINNIRFTVTCTEV 67 +Y+ D G++LY+G+ N R++ + + H ++ S + T+ Sbjct: 362 IYRAFDREGQLLYIGETINPLVRLREHAGLGSINHAHHRLVSPWFSTMATFHLESCFTQA 421 Query: 68 EALLLEANMIKRLKPRFN 85 EA EA IK +PR+N Sbjct: 422 EAKEKEALYIKLEQPRYN 439 >gi|332799457|ref|YP_004460956.1| competence protein ComEA helix-hairpin-helix repeat protein [Tepidanaerobacter sp. Re1] gi|332697192|gb|AEE91649.1| competence protein ComEA helix-hairpin-helix repeat protein [Tepidanaerobacter sp. Re1] Length = 197 Score = 41.2 bits (95), Expect = 0.45, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L ++ GIGP+ + ++ F T+ I + GI K +I + Sbjct: 145 ELIQLPGIGPVTAQKIMDYRKTNGLFKTIDDIKN--------VSGIGDKKFEQIKD 192 >gi|289772665|ref|ZP_06532043.1| 5'-3' exonuclease [Streptomyces lividans TK24] gi|289702864|gb|EFD70293.1| 5'-3' exonuclease [Streptomyces lividans TK24] Length = 306 Score = 41.2 bits (95), Expect = 0.45, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 12/28 (42%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584 L + GIG LL FG + I + Sbjct: 202 LPGVPGIGEKTAAKLLAEFGDLAGIQAA 229 >gi|256788770|ref|ZP_05527201.1| 5'-3' exonuclease [Streptomyces lividans TK24] Length = 301 Score = 41.2 bits (95), Expect = 0.45, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 12/28 (42%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584 L + GIG LL FG + I + Sbjct: 197 LPGVPGIGEKTAAKLLAEFGDLAGIQAA 224 >gi|268589737|ref|ZP_06123958.1| holliday junction DNA helicase RuvA [Providencia rettgeri DSM 1131] gi|291314889|gb|EFE55342.1| holliday junction DNA helicase RuvA [Providencia rettgeri DSM 1131] Length = 205 Score = 41.2 bits (95), Expect = 0.45, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 7/61 (11%) Query: 548 RRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACK 602 ++++A + L ++NG+GP +L Q F V I + + +L + GI KK A + Sbjct: 66 KQERALFKELIKVNGVGPKLALAILSGMSAQQF--VSAIEQEAIASLVKLPGIGKKTAER 123 Query: 603 I 603 + Sbjct: 124 L 124 >gi|198283038|ref|YP_002219359.1| NAD-dependent DNA ligase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666742|ref|YP_002425245.1| DNA ligase, NAD-dependent [Acidithiobacillus ferrooxidans ATCC 23270] gi|254781244|sp|B7J653|DNLJ_ACIF2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781245|sp|B5EP61|DNLJ_ACIF5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|198247559|gb|ACH83152.1| DNA ligase, NAD-dependent [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518955|gb|ACK79541.1| DNA ligase, NAD-dependent [Acidithiobacillus ferrooxidans ATCC 23270] Length = 671 Score = 41.2 bits (95), Expect = 0.45, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 6/63 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 ++ ++ L I +G + L FG + + ++PE L +I + +A + Sbjct: 504 RSRHTSLPRFLYALGIRQVGEGTAKSLAIYFGDLDPLMAATPELLQNIPDVGPIVAESVA 563 Query: 605 NHF 607 + F Sbjct: 564 HFF 566 >gi|156056488|ref|XP_001594168.1| hypothetical protein SS1G_05598 [Sclerotinia sclerotiorum 1980] gi|154703380|gb|EDO03119.1| hypothetical protein SS1G_05598 [Sclerotinia sclerotiorum 1980 UF-70] Length = 929 Score = 41.2 bits (95), Expect = 0.45, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 + G+ L+ G +K ++ +S E L + K+ +I+ F+K+ Sbjct: 878 VPGVTGKNLGNLVVELGNIKEVANASLEELE--PAVGKEAGRQIHRFFNKS 926 >gi|86359706|ref|YP_471597.1| hypothetical protein RHE_PA00001 [Rhizobium etli CFN 42] gi|86283808|gb|ABC92870.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 318 Score = 41.2 bits (95), Expect = 0.45, Method: Composition-based stats. Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 3/34 (8%) Query: 62 VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFP 95 T E AL EA++I+ KP++N+L +D SFP Sbjct: 195 TTAVERIAL-YEASLIRYFKPKYNVLFKD--SFP 225 >gi|21220118|ref|NP_625897.1| 5'-3' exonuclease [Streptomyces coelicolor A3(2)] gi|17367064|sp|Q9RJ79|EX53_STRCO RecName: Full=5'-3' exonuclease gi|6119664|emb|CAB59475.1| putative 5'-3' exonuclease [Streptomyces coelicolor A3(2)] Length = 301 Score = 41.2 bits (95), Expect = 0.45, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 12/28 (42%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584 L + GIG LL FG + I + Sbjct: 197 LPGVPGIGEKTAAKLLAEFGDLAGIQAA 224 >gi|13471076|ref|NP_102645.1| DNA repair protein RadC [Mesorhizobium loti MAFF303099] gi|14021820|dbj|BAB48431.1| DNA repair protein; RadC [Mesorhizobium loti MAFF303099] Length = 179 Score = 41.2 bits (95), Expect = 0.45, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 16/32 (50%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 + LL FGT+ + + L ++GI +A Sbjct: 37 KALLARFGTLAEVLGAPVNLLQEVKGIGPAVA 68 >gi|329120426|ref|ZP_08249092.1| NAD-dependent DNA ligase LigA [Neisseria bacilliformis ATCC BAA-1200] gi|327462110|gb|EGF08438.1| NAD-dependent DNA ligase LigA [Neisseria bacilliformis ATCC BAA-1200] Length = 887 Score = 41.2 bits (95), Expect = 0.45, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 26/56 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FGT+ + R+ LA + I + +A + + F ++ Sbjct: 636 GIRHVGERTAKTLAQAFGTLDTVRRAPEPVLACLPDIGEVVARSVAHFFAQDAQQA 691 >gi|239909102|ref|YP_002955844.1| DNA repair protein RadC [Desulfovibrio magneticus RS-1] gi|239798969|dbj|BAH77958.1| DNA repair protein RadC [Desulfovibrio magneticus RS-1] Length = 228 Score = 41.2 bits (95), Expect = 0.45, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 21/87 (24%) Query: 544 THRKR---------RKKAAYSPLDEINGIGPLRK------RLLLQSFGTVKMISRSSPET 588 HR+R R A Y L+ + G +R+ + LL FG+++ + + E Sbjct: 12 GHRRRLKDRLLDDPRALAKYEVLELVLGYVNVRRDNKPLAKELLARFGSLRGVLTARFEE 71 Query: 589 LASIEGISK------KIACKIYNHFHK 609 L + G + +++ FH+ Sbjct: 72 LRGVPGFGAGAEEFLTLWREVWARFHE 98 >gi|194468325|ref|ZP_03074311.1| Holliday junction DNA helicase RuvA [Lactobacillus reuteri 100-23] gi|194453178|gb|EDX42076.1| Holliday junction DNA helicase RuvA [Lactobacillus reuteri 100-23] Length = 199 Score = 41.2 bits (95), Expect = 0.45, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Query: 551 KAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKI 603 K + L ++GIGP +L G V I+ ++ L GI KK A +I Sbjct: 68 KNLFMQLINVSGIGPKSALAILANPDHQGLVDAITNNNVSYLTKFPGIGKKTASQI 123 >gi|148543762|ref|YP_001271132.1| Holliday junction DNA helicase RuvA [Lactobacillus reuteri DSM 20016] gi|184153168|ref|YP_001841509.1| Holliday junction DNA helicase RuvA [Lactobacillus reuteri JCM 1112] gi|227363258|ref|ZP_03847390.1| crossover junction endoribonuclease subunit A [Lactobacillus reuteri MM2-3] gi|325682134|ref|ZP_08161652.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus reuteri MM4-1A] gi|167012661|sp|A5VIX1|RUVA_LACRD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560094|sp|B2G6E7|RUVA_LACRJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|148530796|gb|ABQ82795.1| Holliday junction DNA helicase subunit RuvA [Lactobacillus reuteri DSM 20016] gi|183224512|dbj|BAG25029.1| holliday junction DNA helicase RuvA [Lactobacillus reuteri JCM 1112] gi|227071714|gb|EEI10005.1| crossover junction endoribonuclease subunit A [Lactobacillus reuteri MM2-3] gi|324978778|gb|EGC15727.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus reuteri MM4-1A] Length = 199 Score = 41.2 bits (95), Expect = 0.45, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Query: 551 KAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKI 603 K + L ++GIGP +L G V I+ ++ L GI KK A +I Sbjct: 68 KNLFMQLINVSGIGPKSALAILANPDHQGLVDAITNNNVSYLTKFPGIGKKTASQI 123 >gi|288553689|ref|YP_003425624.1| DNA polymerase I [Bacillus pseudofirmus OF4] gi|288544849|gb|ADC48732.1| DNA polymerase I [Bacillus pseudofirmus OF4] Length = 875 Score = 41.2 bits (95), Expect = 0.46, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 6/45 (13%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 + G+G LL+ FGT++ + S + ++ KK+ K+ Sbjct: 191 GVPGVGEKTALKLLKQFGTIENVLD-SVDDVS-----GKKLKEKL 229 >gi|260556039|ref|ZP_05828258.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606] gi|260410094|gb|EEX03393.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606] Length = 923 Score = 41.2 bits (95), Expect = 0.46, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 7/49 (14%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + G+G LL +GT+ I +A+++ + K++ I ++ Sbjct: 187 GVPGVGAKTAAKLLTEYGTLDNI-------IANVDQLKGKLSQNIKDNL 228 >gi|119487266|ref|ZP_01621017.1| DNA ligase [Lyngbya sp. PCC 8106] gi|119455821|gb|EAW36956.1| DNA ligase [Lyngbya sp. PCC 8106] Length = 685 Score = 41.2 bits (95), Expect = 0.46, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%) Query: 559 EINGIGPLRKRLLLQS--FGTVKMISRSSPETLASIEGISKKIACKIYNH 606 +ING+G + L++ +V + + E L +E I +K A KI N Sbjct: 459 DINGVGEKLVQQLVERKLISSVADLYELTVEKLTQLERIGEKSATKIVNA 508 >gi|297537403|ref|YP_003673172.1| DNA protecting protein DprA [Methylotenera sp. 301] gi|297256750|gb|ADI28595.1| DNA protecting protein DprA [Methylotenera sp. 301] Length = 371 Score = 41.2 bits (95), Expect = 0.46, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 K+ + L I+GIG LL++FG I +S L + +S IA +I Sbjct: 17 KSLWIALSSIHGIGSQTFCQLLKTFGNPSHIFTASHSQLKEV--VSDAIAAEI 67 >gi|78044333|ref|YP_360355.1| Holliday junction DNA helicase RuvA [Carboxydothermus hydrogenoformans Z-2901] gi|90134706|sp|Q3ABX9|RUVA_CARHZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|77996448|gb|ABB15347.1| Holliday junction DNA helicase RuvA [Carboxydothermus hydrogenoformans Z-2901] Length = 195 Score = 41.2 bits (95), Expect = 0.46, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 5/56 (8%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKM----ISRSSPETLASIEGISKKIACKIYNHFH 608 L ++GIGP +L F T + I+ + L + G+ KK A +++ Sbjct: 74 LLSVSGIGPKAALAILNEF-TPEKLNWVIANKDEKALTKVPGVGKKNAQRLFLELK 128 >gi|325203416|gb|ADY98869.1| competence protein comEA [Neisseria meningitidis M01-240355] Length = 99 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 30 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 77 Score = 39.7 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 22 NINAASLQELEALPGIGPAKAKAIAEY 48 >gi|325198757|gb|ADY94213.1| hypothetical protein NMBG2136_1528 [Neisseria meningitidis G2136] Length = 154 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 85 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 132 Score = 38.5 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 77 NINAASQQELEALPGIGPAKAKAIAEY 103 >gi|325138986|gb|EGC61534.1| competence protein comEA [Neisseria meningitidis ES14902] gi|325142815|gb|EGC65185.1| competence protein comEA [Neisseria meningitidis 961-5945] gi|325143057|gb|EGC65407.1| competence protein comEA [Neisseria meningitidis 961-5945] Length = 99 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 30 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 77 Score = 38.5 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 22 NINAASQQELEALPGIGPAKAKAIAEY 48 >gi|325135463|gb|EGC58082.1| competence protein comEA [Neisseria meningitidis M0579] gi|325201345|gb|ADY96799.1| competence protein comEA [Neisseria meningitidis M01-240149] gi|325203186|gb|ADY98639.1| competence protein comEA [Neisseria meningitidis M01-240355] gi|325204967|gb|ADZ00421.1| competence protein comEA [Neisseria meningitidis M01-240355] gi|325207325|gb|ADZ02777.1| competence protein comEA [Neisseria meningitidis NZ-05/33] Length = 99 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 30 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 77 Score = 39.7 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 22 NINAASLQELEALPGIGPAKAKAIAEY 48 >gi|325134734|gb|EGC57372.1| ComE1 [Neisseria meningitidis M13399] Length = 99 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 30 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 77 Score = 38.5 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 22 NINAASQQELEALPGIGPAKAKAIAEY 48 >gi|325133016|gb|EGC55690.1| competence protein comEA [Neisseria meningitidis M6190] gi|325138680|gb|EGC61233.1| competence protein comEA [Neisseria meningitidis ES14902] Length = 99 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 30 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 77 Score = 38.5 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 22 NINAASQQELEALPGIGPAKAKAIAEY 48 >gi|325132997|gb|EGC55672.1| competence protein comEA [Neisseria meningitidis M6190] Length = 99 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 30 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 77 Score = 38.5 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 22 NINAASQQELEALPGIGPAKAKAIAEY 48 >gi|325131426|gb|EGC54135.1| competence protein comEA [Neisseria meningitidis M6190] gi|325133484|gb|EGC56148.1| competence protein comEA [Neisseria meningitidis M13399] gi|325137459|gb|EGC60046.1| competence protein comEA [Neisseria meningitidis ES14902] gi|325141459|gb|EGC63935.1| competence protein comEA [Neisseria meningitidis 961-5945] gi|325143725|gb|EGC66044.1| competence protein comEA [Neisseria meningitidis M01-240013] gi|325199005|gb|ADY94461.1| competence protein comEA [Neisseria meningitidis G2136] gi|325199108|gb|ADY94564.1| competence protein comEA [Neisseria meningitidis G2136] gi|325201065|gb|ADY96520.1| competence protein comEA [Neisseria meningitidis H44/76] gi|325206922|gb|ADZ02375.1| competence protein comEA [Neisseria meningitidis M04-240196] Length = 99 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 30 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 77 Score = 38.5 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 22 NINAASQQELEALPGIGPAKAKAIAEY 48 >gi|325130922|gb|EGC53650.1| ComE1 [Neisseria meningitidis OX99.30304] gi|325131102|gb|EGC53823.1| ComE1 [Neisseria meningitidis OX99.30304] gi|325137125|gb|EGC59720.1| competence protein ComEA helix-hairpin-helix repeat protein [Neisseria meningitidis M0579] Length = 99 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 30 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 77 Score = 39.7 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 22 NINAASLQELEALPGIGPAKAKAIAEY 48 >gi|325129404|gb|EGC52237.1| competence protein comEA [Neisseria meningitidis OX99.30304] Length = 99 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 30 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 77 Score = 39.7 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 22 NINAASLQELEALPGIGPAKAKAIAEY 48 >gi|325129162|gb|EGC52009.1| comE1 [Neisseria meningitidis N1568] Length = 76 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 7 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 54 >gi|325128957|gb|EGC51810.1| comE1 [Neisseria meningitidis N1568] Length = 82 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 30 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 77 Score = 38.5 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 22 NINAASQQELEALPGIGPAKAKAIAEY 48 >gi|325127392|gb|EGC50326.1| comE1 [Neisseria meningitidis N1568] Length = 100 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 31 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 78 Score = 38.5 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 23 NINAASQQELEALPGIGPAKAKAIAEY 49 >gi|319411218|emb|CBY91625.1| DNA-binding competence protein ComE2 [Neisseria meningitidis WUE 2594] gi|319411446|emb|CBY91861.1| DNA-binding competence protein ComE2 [Neisseria meningitidis WUE 2594] gi|325133132|gb|EGC55803.1| competence protein comEA [Neisseria meningitidis M6190] gi|325135182|gb|EGC57807.1| competence protein comEA [Neisseria meningitidis M13399] gi|325138749|gb|EGC61301.1| competence protein comEA [Neisseria meningitidis ES14902] gi|325145194|gb|EGC67475.1| competence protein comEA [Neisseria meningitidis M01-240013] gi|325205162|gb|ADZ00615.1| competence protein comEA [Neisseria meningitidis M04-240196] Length = 99 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 30 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 77 Score = 38.5 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 22 NINAASQQELEALPGIGPAKAKAIAEY 48 >gi|319409673|emb|CBY89974.1| DNA-binding competence protein ComE2 [Neisseria meningitidis WUE 2594] gi|319410911|emb|CBY91306.1| DNA-binding competence protein ComE2 [Neisseria meningitidis WUE 2594] Length = 148 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 79 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 126 Score = 38.5 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 71 NINAASQQELEALPGIGPAKAKAIAEY 97 >gi|316984292|gb|EFV63266.1| comE1 [Neisseria meningitidis H44/76] gi|325135003|gb|EGC57632.1| competence protein comEA [Neisseria meningitidis M13399] gi|325141030|gb|EGC63535.1| competence protein comEA [Neisseria meningitidis CU385] gi|325141050|gb|EGC63554.1| DNA transport competence protein [Neisseria meningitidis CU385] gi|325197358|gb|ADY92814.1| ComE1 [Neisseria meningitidis G2136] gi|325199499|gb|ADY94954.1| competence protein comEA [Neisseria meningitidis H44/76] Length = 99 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 30 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 77 Score = 38.5 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 22 NINAASQQELEALPGIGPAKAKAIAEY 48 >gi|313667706|ref|YP_004047990.1| DNA transport competence protein [Neisseria lactamica ST-640] gi|313005168|emb|CBN86601.1| putative DNA transport competence protein [Neisseria lactamica 020-06] Length = 99 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 30 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 77 >gi|308388515|gb|ADO30835.1| putative DNA transport competence protein [Neisseria meningitidis alpha710] gi|308389779|gb|ADO32099.1| putative DNA transport competence protein [Neisseria meningitidis alpha710] Length = 148 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 79 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 126 Score = 39.7 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 71 NINAASLQELEALPGIGPAKAKAIAEY 97 >gi|308388278|gb|ADO30598.1| putative DNA transport competence protein [Neisseria meningitidis alpha710] gi|325136880|gb|EGC59477.1| competence protein ComEA helix-hairpin-helix repeat protein [Neisseria meningitidis M0579] gi|325201244|gb|ADY96698.1| ComE1 [Neisseria meningitidis M01-240149] gi|325202875|gb|ADY98329.1| ComE1 [Neisseria meningitidis M01-240149] gi|325207103|gb|ADZ02555.1| competence protein comEA [Neisseria meningitidis NZ-05/33] gi|325208869|gb|ADZ04321.1| competence protein comEA [Neisseria meningitidis NZ-05/33] Length = 99 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 30 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 77 Score = 39.7 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 22 NINAASLQELEALPGIGPAKAKAIAEY 48 >gi|304389134|ref|ZP_07371175.1| competence protein comEA [Neisseria meningitidis ATCC 13091] gi|304336910|gb|EFM03103.1| competence protein comEA [Neisseria meningitidis ATCC 13091] Length = 128 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 79 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 126 Score = 38.5 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 71 NINAASQQELEALPGIGPAKAKAIAEY 97 >gi|296315134|ref|ZP_06865075.1| competence protein comEA [Neisseria polysaccharea ATCC 43768] gi|296315363|ref|ZP_06865304.1| competence protein comEA [Neisseria polysaccharea ATCC 43768] gi|296837676|gb|EFH21614.1| competence protein comEA [Neisseria polysaccharea ATCC 43768] gi|296837938|gb|EFH21876.1| competence protein comEA [Neisseria polysaccharea ATCC 43768] Length = 99 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 30 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 77 Score = 38.9 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 8/27 (29%), Positives = 14/27 (51%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +SP+ L ++ GI A I + Sbjct: 22 NINAASPQELEALPGIGPAKAKAIAEY 48 >gi|261393343|emb|CAX50979.1| DNA-binding competence protein ComE4 [Neisseria meningitidis 8013] Length = 154 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 85 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 132 Score = 38.5 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 77 NINAASQQELEALPGIGPAKAKAIAEY 103 >gi|261391831|emb|CAX49288.1| DNA-binding competence protein ComE2 [Neisseria meningitidis 8013] gi|261392119|emb|CAX49616.1| DNA-binding competence protein ComE3 [Neisseria meningitidis 8013] Length = 154 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 85 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 132 Score = 38.5 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 77 NINAASQQELEALPGIGPAKAKAIAEY 103 >gi|261391604|emb|CAX49042.1| DNA-binding competence protein ComE1 [Neisseria meningitidis 8013] Length = 154 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 85 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 132 Score = 38.5 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 77 NINAASQQELEALPGIGPAKAKAIAEY 103 >gi|254672840|emb|CBA07032.1| putative DNA transport competence protein [Neisseria meningitidis alpha275] Length = 148 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 79 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 126 Score = 39.7 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 71 NINAASLQELEALPGIGPAKAKAIAEY 97 >gi|254672424|emb|CBA05774.1| putative DNA transport competence protein [Neisseria meningitidis alpha275] Length = 148 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 79 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 126 Score = 39.7 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 71 NINAASLQELEALPGIGPAKAKAIAEY 97 >gi|254672109|emb|CBA04820.1| putative DNA transport competence protein [Neisseria meningitidis alpha275] gi|254673651|emb|CBA09218.1| putative DNA transport competence protein [Neisseria meningitidis alpha275] Length = 96 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 27 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 74 Score = 39.7 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 19 NINAASLQELEALPGIGPAKAKAIAEY 45 >gi|254671769|emb|CBA09614.1| putative DNA transport competence protein [Neisseria meningitidis alpha153] Length = 148 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 79 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 126 Score = 38.5 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 71 NINAASQQELEALPGIGPAKAKAIAEY 97 >gi|254671711|emb|CBA09499.1| putative DNA transport competence protein [Neisseria meningitidis alpha153] gi|325139338|gb|EGC61879.1| competence protein comEA [Neisseria meningitidis CU385] Length = 99 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 30 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 77 Score = 38.5 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 22 NINAASQQELEALPGIGPAKAKAIAEY 48 >gi|254805414|ref|YP_003083635.1| putative DNA transport competence protein [Neisseria meningitidis alpha14] gi|254805662|ref|YP_003083883.1| putative DNA transport competence protein [Neisseria meningitidis alpha14] gi|254805867|ref|YP_003084088.1| putative DNA transport competence protein [Neisseria meningitidis alpha14] gi|254668956|emb|CBA07235.1| putative DNA transport competence protein [Neisseria meningitidis alpha14] gi|254669204|emb|CBA07991.1| putative DNA transport competence protein [Neisseria meningitidis alpha14] gi|254669409|emb|CBA08604.1| putative DNA transport competence protein [Neisseria meningitidis alpha14] Length = 148 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 79 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 126 Score = 39.7 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 71 NINAASLQELEALPGIGPAKAKAIAEY 97 >gi|254804171|ref|YP_003082392.1| putative DNA transport competence protein [Neisseria meningitidis alpha14] gi|254667713|emb|CBA03589.1| putative DNA transport competence protein [Neisseria meningitidis alpha14] Length = 148 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 79 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 126 Score = 39.7 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 71 NINAASLQELEALPGIGPAKAKAIAEY 97 >gi|161869185|ref|YP_001598351.1| DNA transport competence protein [Neisseria meningitidis 053442] gi|161594738|gb|ABX72398.1| DNA transport competence protein [Neisseria meningitidis 053442] Length = 128 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 59 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 106 Score = 38.5 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 51 NINAASQQELEALPGIGPAKAKAIAEY 77 >gi|161869075|ref|YP_001598241.1| DNA transport competence protein [Neisseria meningitidis 053442] gi|161594628|gb|ABX72288.1| DNA transport competence protein [Neisseria meningitidis 053442] Length = 145 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 76 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 123 Score = 38.5 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 68 NINAASQQELEALPGIGPAKAKAIAEY 94 >gi|159154700|gb|ABW93685.1| ComEA [Neisseria meningitidis] gi|254669594|emb|CBA03607.1| putative DNA transport competence protein [Neisseria meningitidis alpha153] Length = 148 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 79 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 126 Score = 38.5 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 71 NINAASQQELEALPGIGPAKAKAIAEY 97 >gi|121635674|ref|YP_975919.1| putative DNA transport competence protein [Neisseria meningitidis FAM18] gi|120867380|emb|CAM11152.1| putative DNA transport competence protein [Neisseria meningitidis FAM18] Length = 154 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 85 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 132 Score = 38.5 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 77 NINAASQQELEALPGIGPAKAKAIAEY 103 >gi|121635298|ref|YP_975543.1| putative DNA transport competence protein [Neisseria meningitidis FAM18] gi|121635568|ref|YP_975813.1| putative DNA transport competence protein [Neisseria meningitidis FAM18] gi|120867004|emb|CAM10767.1| putative DNA transport competence protein [Neisseria meningitidis FAM18] gi|120867274|emb|CAM11045.1| putative DNA transport competence protein [Neisseria meningitidis FAM18] Length = 154 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 85 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 132 Score = 38.5 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 77 NINAASQQELEALPGIGPAKAKAIAEY 103 >gi|121633939|ref|YP_974184.1| putative DNA transport competence protein [Neisseria meningitidis FAM18] gi|120865645|emb|CAM09365.1| putative DNA transport competence protein [Neisseria meningitidis FAM18] Length = 154 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 85 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 132 Score = 38.5 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 77 NINAASQQELEALPGIGPAKAKAIAEY 103 >gi|118479620|ref|YP_896771.1| DNA repair protein RadC [Bacillus thuringiensis str. Al Hakam] gi|118418845|gb|ABK87264.1| DNA replication and repair protein RadC [Bacillus thuringiensis str. Al Hakam] Length = 208 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 19/38 (50%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +L F ++M+ ++ E L SI G+ A ++ F Sbjct: 50 KILHHFDGLRMLKDATLEELVSIHGVGIAKATQLIAAF 87 >gi|5051421|emb|CAB44964.1| ComEA protein [Neisseria meningitidis] Length = 170 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 101 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 148 Score = 38.5 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 93 NINAASQQELEALPGIGPAKAKAIAEY 119 >gi|5051417|emb|CAB44958.1| ComEA protein [Neisseria meningitidis] Length = 170 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 101 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 148 Score = 38.5 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 93 NINAASQQELEALPGIGPAKAKAIAEY 119 >gi|15676221|ref|NP_273353.1| comEA-related protein [Neisseria meningitidis MC58] gi|7225524|gb|AAF40750.1| comEA-related protein [Neisseria meningitidis MC58] Length = 148 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 79 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 126 Score = 38.5 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 71 NINAASQQELEALPGIGPAKAKAIAEY 97 >gi|15677506|ref|NP_274662.1| comE operon protein 1-related protein [Neisseria meningitidis MC58] gi|7226909|gb|AAF42006.1| comE operon protein 1-related protein [Neisseria meningitidis MC58] Length = 205 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 136 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 183 Score = 38.5 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 128 NINAASQQELEALPGIGPAKAKAIAEY 154 >gi|15677842|ref|NP_275009.1| ComEA-related protein [Neisseria meningitidis MC58] gi|7227278|gb|AAF42340.1| ComEA-related protein [Neisseria meningitidis MC58] gi|316985667|gb|EFV64614.1| comE1 [Neisseria meningitidis H44/76] Length = 148 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 79 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 126 Score = 38.5 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 71 NINAASQQELEALPGIGPAKAKAIAEY 97 >gi|218767241|ref|YP_002341753.1| putative DNA transport competence protein [Neisseria meningitidis Z2491] gi|218767410|ref|YP_002341922.1| putative DNA transport competence protein [Neisseria meningitidis Z2491] gi|121051249|emb|CAM07524.1| putative DNA transport competence protein [Neisseria meningitidis Z2491] gi|121051418|emb|CAM07711.1| putative DNA transport competence protein [Neisseria meningitidis Z2491] Length = 154 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 85 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 132 Score = 38.5 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 77 NINAASQQELEALPGIGPAKAKAIAEY 103 >gi|218768680|ref|YP_002343192.1| putative DNA transport competence protein [Neisseria meningitidis Z2491] gi|218768920|ref|YP_002343432.1| putative DNA transport competence protein [Neisseria meningitidis Z2491] gi|121052688|emb|CAM09030.1| putative DNA transport competence protein [Neisseria meningitidis Z2491] gi|121052928|emb|CAM09282.1| putative DNA transport competence protein [Neisseria meningitidis Z2491] Length = 154 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 85 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 132 Score = 38.5 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 77 NINAASQQELEALPGIGPAKAKAIAEY 103 >gi|332878784|ref|ZP_08446499.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683135|gb|EGJ56017.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 929 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 4/36 (11%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590 D I G +G + LL FG+++ + ++ + L Sbjct: 191 DNIPGLPGVGEKTAKKLLADFGSLENLL-ANTDQLK 225 >gi|326389491|ref|ZP_08211058.1| DNA protecting protein DprA [Thermoanaerobacter ethanolicus JW 200] gi|325994496|gb|EGD52921.1| DNA protecting protein DprA [Thermoanaerobacter ethanolicus JW 200] Length = 362 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 1/58 (1%) Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 R+K L + GIG L++ F T + + ++ + G ++K+ I Sbjct: 3 REKIFKIWLSTVKGIGYKSFVQLMEFFKTAEGVYKAKEIDIFKAIG-NRKLVQNIIEA 59 >gi|268679198|ref|YP_003303629.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946] gi|268617229|gb|ACZ11594.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946] Length = 885 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590 D I G IGP + LL FG+V+ I ++ E +A Sbjct: 184 DNIPGVKGIGPKGAKKLLDDFGSVENIY-ANLERIA 218 >gi|158337778|ref|YP_001518954.1| DNA protecting protein DprA [Acaryochloris marina MBIC11017] gi|158308019|gb|ABW29636.1| DNA protecting protein DprA [Acaryochloris marina MBIC11017] Length = 376 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I GIGP+ + L Q FGT+ + TL ++ GI + I H ++T+ T Sbjct: 13 IPGIGPVVLKRLQQRFGTLSSAWSADSGTLGAVTGIGAQTLKTIQKH-RQSTNPT 66 >gi|257077010|ref|ZP_05571371.1| DNA repair and recombination protein RadA [Ferroplasma acidarmanus fer1] Length = 335 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 558 DEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +++ G+G L ++ + + I+ +SP+ LA I GI++ A KI N K Sbjct: 27 EDLPGVGEATAEKLRENGYDDIMAIAVASPKDLADISGIAEGAAVKIINAARK 79 >gi|153009239|ref|YP_001370454.1| DNA repair protein RadC [Ochrobactrum anthropi ATCC 49188] gi|229470322|sp|A6X071|Y1909_OCHA4 RecName: Full=UPF0758 protein Oant_1909 gi|151561127|gb|ABS14625.1| DNA repair protein RadC [Ochrobactrum anthropi ATCC 49188] Length = 249 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 7/36 (19%), Positives = 18/36 (50%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 + LL FG++ + + + +A + G +A ++ Sbjct: 73 KALLMRFGSIAEVLAAPEKLIAEVPGAGPTVAHELK 108 >gi|115424492|dbj|BAF33374.1| DNA polymerase I [Bacillus smithii] Length = 876 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + GIG LL+ F TV+ + S + ++ KK+ ++ H Sbjct: 192 GVPGIGEKTAIKLLKEFETVEKVVD-SIDEIS-----GKKLKERLQEH 233 >gi|46143844|ref|ZP_00133975.2| COG0632: Holliday junction resolvasome, DNA-binding subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207771|ref|YP_001052996.1| Holliday junction DNA helicase RuvA [Actinobacillus pleuropneumoniae L20] gi|303252521|ref|ZP_07338684.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247270|ref|ZP_07529319.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249498|ref|ZP_07531486.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307256311|ref|ZP_07538094.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307260744|ref|ZP_07542433.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|166229626|sp|A3MZ05|RUVA_ACTP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|126096563|gb|ABN73391.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|302648489|gb|EFL78682.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856243|gb|EFM88397.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858491|gb|EFM90559.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306865137|gb|EFM97037.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306869583|gb|EFN01371.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 201 Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 13/83 (15%) Query: 533 LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET- 588 +R++AH FA +++ + + L + NG+GP +L + +V + + Sbjct: 53 VREDAHLLFGFA-----QKQDRTLFRELIKTNGVGPKLALAILSAM-SVSQFANAVENEE 106 Query: 589 ---LASIEGISKKIACKIYNHFH 608 L I GI +K A ++ Sbjct: 107 LAKLTKIPGIGRKTAERLLVELK 129 >gi|315093170|gb|EFT65146.1| comEA protein [Propionibacterium acnes HL060PA1] Length = 283 Score = 41.2 bits (95), Expect = 0.48, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 14/59 (23%) Query: 554 YSPLDEINGIGPLRKRLLLQ------SFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 S L+ I+G+GP+ ++ F +S + L I GI K KI + Sbjct: 230 QSELETIDGVGPVMAGKIMAWRQEHGQF--------ASVDQLREISGIGAKTFEKIKPY 280 >gi|314966912|gb|EFT11011.1| comEA protein [Propionibacterium acnes HL082PA2] gi|327327733|gb|EGE69509.1| ComE operon protein 1 [Propionibacterium acnes HL103PA1] Length = 283 Score = 41.2 bits (95), Expect = 0.48, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 14/59 (23%) Query: 554 YSPLDEINGIGPLRKRLLLQ------SFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 S L+ I+G+GP+ ++ F +S + L I GI K KI + Sbjct: 230 QSELETIDGVGPVMAGKIMAWRQEHGQF--------ASVDQLREISGIGAKTFEKIKPY 280 >gi|317129783|ref|YP_004096065.1| DNA repair protein RadC [Bacillus cellulosilyticus DSM 2522] gi|315474731|gb|ADU31334.1| DNA repair protein RadC [Bacillus cellulosilyticus DSM 2522] Length = 191 Score = 41.2 bits (95), Expect = 0.48, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 18/35 (51%) Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 +Q F +K++ +S L +I+GI + A I Sbjct: 54 IQHFDGLKLLKEASIPELQNIKGIGEAKAVTIKAA 88 >gi|261839678|gb|ACX99443.1| Holliday junction DNA helicase motor protein [Helicobacter pylori 52] Length = 183 Score = 41.2 bits (95), Expect = 0.48, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 7/58 (12%) Query: 551 KAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACKI 603 K + L +ING+G +L F ++ + L + GI KK+A KI Sbjct: 68 KILFERLLKINGVGGRIALAILSSFSPNEFESIIATKE--VKRLQQVPGIGKKLADKI 123 >gi|50842380|ref|YP_055607.1| ComE operon protein 1 [Propionibacterium acnes KPA171202] gi|282854162|ref|ZP_06263499.1| comEA protein [Propionibacterium acnes J139] gi|50839982|gb|AAT82649.1| ComE operon protein 1 [Propionibacterium acnes KPA171202] gi|282583615|gb|EFB88995.1| comEA protein [Propionibacterium acnes J139] gi|314923143|gb|EFS86974.1| comEA protein [Propionibacterium acnes HL001PA1] gi|314981253|gb|EFT25347.1| comEA protein [Propionibacterium acnes HL110PA3] gi|315091822|gb|EFT63798.1| comEA protein [Propionibacterium acnes HL110PA4] gi|315103325|gb|EFT75301.1| comEA protein [Propionibacterium acnes HL050PA2] gi|315105530|gb|EFT77506.1| comEA protein [Propionibacterium acnes HL030PA1] Length = 283 Score = 41.2 bits (95), Expect = 0.48, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 14/59 (23%) Query: 554 YSPLDEINGIGPLRKRLLLQ------SFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 S L+ I+G+GP+ ++ F +S + L I GI K KI + Sbjct: 230 QSELETIDGVGPVMAGKIMAWRQEHGQF--------ASVDQLREISGIGAKTFEKIKPY 280 >gi|323704240|ref|ZP_08115819.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323536306|gb|EGB26078.1| competence protein ComEA helix-hairpin-helix repeat protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 205 Score = 41.2 bits (95), Expect = 0.48, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 10/58 (17%) Query: 552 AAYSPLDEINGIGPLRKRLLL----QSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 A LD + GIG + + ++ Q G + I E + ++ I K+ +I + Sbjct: 149 ATKEELDTLPGIGEVTAQRIIDFREQH-GNFQRI-----EDIMNVSRIGPKLFEQIKD 200 >gi|229824009|ref|ZP_04450078.1| hypothetical protein GCWU000282_01313 [Catonella morbi ATCC 51271] gi|229786363|gb|EEP22477.1| hypothetical protein GCWU000282_01313 [Catonella morbi ATCC 51271] Length = 197 Score = 41.2 bits (95), Expect = 0.48, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 3/62 (4%) Query: 544 THRKRRKKAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIA 600 R +++K ++ L +++GIGP +L G ++ I L G+ KK A Sbjct: 63 GFRDQQEKQLFNTLLKVSGIGPKSALSILALDDHVGLIQAIDSGDSTYLTKFPGVGKKTA 122 Query: 601 CK 602 + Sbjct: 123 QQ 124 >gi|167037677|ref|YP_001665255.1| DNA protecting protein DprA [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116092|ref|YP_004186251.1| DNA protecting protein DprA [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856511|gb|ABY94919.1| DNA protecting protein DprA [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929183|gb|ADV79868.1| DNA protecting protein DprA [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 362 Score = 41.2 bits (95), Expect = 0.48, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 1/58 (1%) Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 R+K L + GIG L++ F T + + ++ + G ++K+ I Sbjct: 3 REKIFKIWLSTVKGIGYKSFVQLMEFFKTAEGVYKAKEIDIFKAIG-NRKLVQNIIEA 59 >gi|167646221|ref|YP_001683884.1| hypothetical protein Caul_2259 [Caulobacter sp. K31] gi|167348651|gb|ABZ71386.1| conserved hypothetical protein [Caulobacter sp. K31] Length = 245 Score = 41.2 bits (95), Expect = 0.49, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%) Query: 11 GVYQMLDIAGRVLYVGKAY-NLQKRIKSYMHSNNHTH 46 GVY D G +YVG+ L+ RI+ ++ + Sbjct: 53 GVYAFFDYDGEPIYVGQTNERLRSRIRRHLTNQRTDA 89 >gi|120406291|ref|YP_956120.1| DNA integrity scanning protein DisA [Mycobacterium vanbaalenii PYR-1] gi|119959109|gb|ABM16114.1| protein of unknown function DUF147 [Mycobacterium vanbaalenii PYR-1] Length = 373 Score = 41.2 bits (95), Expect = 0.49, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 22/44 (50%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 L+++FG+++ + ++ L S++GI A I + T Sbjct: 324 LVRNFGSLQGLLAATATDLQSVDGIGSMWARHIREGLSQLAEST 367 >gi|29833256|ref|NP_827890.1| 5'-3' exonuclease [Streptomyces avermitilis MA-4680] gi|29610378|dbj|BAC74425.1| putative 5'-3' exonuclease [Streptomyces avermitilis MA-4680] Length = 309 Score = 41.2 bits (95), Expect = 0.49, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 12/28 (42%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584 L + GIG LL FG + I + Sbjct: 205 LPGVPGIGEKTAAKLLAEFGDLAGIMAA 232 >gi|116493020|ref|YP_804755.1| Holliday junction DNA helicase subunit RuvA [Pediococcus pentosaceus ATCC 25745] gi|122265516|sp|Q03EQ9|RUVA_PEDPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116103170|gb|ABJ68313.1| Holliday junction DNA helicase subunit RuvA [Pediococcus pentosaceus ATCC 25745] Length = 195 Score = 41.2 bits (95), Expect = 0.49, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 3/63 (4%) Query: 544 THRKRRKKAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIA 600 +K K + L ++ GIGP +L G + I+ L I K A Sbjct: 59 GFKKAEDKELFLNLLKVKGIGPKSALAILANDDHTGLINAINNDDVSYLKKFPKIGPKAA 118 Query: 601 CKI 603 +I Sbjct: 119 QQI 121 >gi|309389493|gb|ADO77373.1| DNA replication and repair protein RadC [Halanaerobium praevalens DSM 2228] Length = 231 Score = 41.2 bits (95), Expect = 0.49, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 17/35 (48%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 + LL +G +K + S E L I GI A +I Sbjct: 55 QDLLNLYGGLKGLQDLSCEELKKINGIGTAKAAQI 89 >gi|307264857|ref|ZP_07546419.1| DNA protecting protein DprA [Thermoanaerobacter wiegelii Rt8.B1] gi|306920115|gb|EFN50327.1| DNA protecting protein DprA [Thermoanaerobacter wiegelii Rt8.B1] Length = 362 Score = 41.2 bits (95), Expect = 0.49, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 1/58 (1%) Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 R+K L + GIG L++ F T + + ++ + G ++K+ I Sbjct: 3 REKIFKIWLSTVKGIGYKSFVQLMEFFKTAEGVYKAKEIDIFKAIG-NRKLVQNIIEA 59 >gi|302390192|ref|YP_003826013.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646] gi|302200820|gb|ADL08390.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646] Length = 864 Score = 41.2 bits (95), Expect = 0.49, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 7/48 (14%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 I G+G LLQ +G+++ I L + E + K+ I + Sbjct: 191 GIPGVGEKTALKLLQEYGSLENI-------LENAEKLKGKLRENILKY 231 >gi|258590906|emb|CBE67201.1| DNA repair protein radC homolog [NC10 bacterium 'Dutch sediment'] Length = 236 Score = 41.2 bits (95), Expect = 0.49, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 28/95 (29%) Query: 530 IQRLRDEAHRFAITTHRKR-RKKAAYS---PLDE-----------INGIGPLRK------ 568 +Q+ R EA + + HR+R R + S L + I R+ Sbjct: 7 MQQAR-EAKNY-VAGHRERLRARYRLSGEVALQDYELLELLLTYAIP-----RRDTKLLA 59 Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 + LL+ FGT+ + + P L +I+G+ + A I Sbjct: 60 KRLLERFGTLARVVEAEPAALEAIDGMGPQAATLI 94 >gi|169236999|ref|YP_001690199.1| DNA repair and recombination protein RadA [Halobacterium salinarum R1] gi|13878695|sp|Q9HMM4|RADA_HALSA RecName: Full=DNA repair and recombination protein radA gi|226736606|sp|B0R7Y4|RADA_HALS3 RecName: Full=DNA repair and recombination protein radA gi|167728065|emb|CAP14853.1| DNA repair protein [Halobacterium salinarum R1] Length = 343 Score = 41.2 bits (95), Expect = 0.49, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Query: 555 SPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 S L+E+ G+GP L + F + ++ ++ L++ I + A + + Sbjct: 4 SDLEELPGVGPATAEKLRDNGFDAFQSLAVANSAELSNTADIGESTAADVIQAAREAAD 62 >gi|327439585|dbj|BAK15950.1| DNA uptake protein [Solibacillus silvestris StLB046] Length = 215 Score = 41.2 bits (95), Expect = 0.49, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 8/58 (13%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYN 605 KA+ L ++ GIGP + ++Q G ++I E L ++ GI K ++ + Sbjct: 158 KASEGELTQLPGIGPAKAAAIIQHRSEQGNFQII-----EDLKNVTGIGDKTFEQLKD 210 >gi|206558866|ref|YP_002229626.1| SMF family protein [Burkholderia cenocepacia J2315] gi|198034903|emb|CAR50775.1| SMF family protein [Burkholderia cenocepacia J2315] Length = 437 Score = 41.2 bits (95), Expect = 0.49, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 G+ P +LLL +FG+ + + R+S E +A++ S A + Sbjct: 36 PGLSPAVLQLLLAAFGSPEALLRASDEAIATVS--SPAAAQAV 76 >gi|282864307|ref|ZP_06273363.1| 5'-3' exonuclease [Streptomyces sp. ACTE] gi|282560794|gb|EFB66340.1| 5'-3' exonuclease [Streptomyces sp. ACTE] Length = 311 Score = 41.2 bits (95), Expect = 0.50, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 13/28 (46%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584 L + GIG LL +FG + I + Sbjct: 207 LPGVPGIGEKTAAKLLDAFGDLAGIMAA 234 >gi|320011768|gb|ADW06618.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein [Streptomyces flavogriseus ATCC 33331] Length = 302 Score = 41.2 bits (95), Expect = 0.50, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 13/28 (46%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584 L + GIG LL +FG + I + Sbjct: 198 LPGVPGIGEKTAAKLLDAFGDLAGIMAA 225 >gi|227495098|ref|ZP_03925414.1| competence protein ComEA [Actinomyces coleocanis DSM 15436] gi|226831550|gb|EEH63933.1| competence protein ComEA [Actinomyces coleocanis DSM 15436] Length = 225 Score = 41.2 bits (95), Expect = 0.50, Method: Composition-based stats. Identities = 9/35 (25%), Positives = 20/35 (57%) Query: 581 ISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615 + +S L S++GI +K A +I ++ +++ P Sbjct: 168 LKTASLTELTSLKGIGEKTAQRILDYRNEHGIKQP 202 Score = 38.5 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 K A+ + L + GIG + +L I + P+ L +I+GI +K Sbjct: 169 KTASLTELTSLKGIGEKTAQRILDY-RNEHGIKQ--PQDLLNIDGIGQKT 215 >gi|294811677|ref|ZP_06770320.1| Putative 5'-3' exonuclease [Streptomyces clavuligerus ATCC 27064] gi|326440139|ref|ZP_08214873.1| 5'-3' exonuclease [Streptomyces clavuligerus ATCC 27064] gi|294324276|gb|EFG05919.1| Putative 5'-3' exonuclease [Streptomyces clavuligerus ATCC 27064] Length = 329 Score = 41.2 bits (95), Expect = 0.50, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 13/28 (46%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584 L + GIG LL +FG + I + Sbjct: 225 LPGVPGIGEKTAAKLLDAFGDLAGIMAA 252 >gi|254392836|ref|ZP_05008006.1| 5'-3' exonuclease [Streptomyces clavuligerus ATCC 27064] gi|197706493|gb|EDY52305.1| 5'-3' exonuclease [Streptomyces clavuligerus ATCC 27064] Length = 301 Score = 41.2 bits (95), Expect = 0.50, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 13/28 (46%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584 L + GIG LL +FG + I + Sbjct: 197 LPGVPGIGEKTAAKLLDAFGDLAGIMAA 224 >gi|126640679|ref|YP_001083663.1| DNA polymerase I [Acinetobacter baumannii ATCC 17978] Length = 879 Score = 41.2 bits (95), Expect = 0.50, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 7/49 (14%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + G+G LL +GT+ I +A+++ + K++ I ++ Sbjct: 143 GVPGVGAKTAAKLLTEYGTLDNI-------IANVDQLKGKLSQNIKDNL 184 >gi|126435099|ref|YP_001070790.1| 5'-3' exonuclease [Mycobacterium sp. JLS] gi|126234899|gb|ABN98299.1| 5'-3' exonuclease [Mycobacterium sp. JLS] Length = 316 Score = 41.2 bits (95), Expect = 0.50, Method: Composition-based stats. Identities = 8/28 (28%), Positives = 14/28 (50%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584 L + G+G LL FG+++ I + Sbjct: 208 LPGVPGVGEKTAATLLAQFGSLEAIVAA 235 >gi|108799445|ref|YP_639642.1| 5'-3' exonuclease [Mycobacterium sp. MCS] gi|119868558|ref|YP_938510.1| 5'-3' exonuclease [Mycobacterium sp. KMS] gi|108769864|gb|ABG08586.1| 5'-3' exonuclease [Mycobacterium sp. MCS] gi|119694647|gb|ABL91720.1| 5'-3' exonuclease [Mycobacterium sp. KMS] Length = 316 Score = 41.2 bits (95), Expect = 0.50, Method: Composition-based stats. Identities = 8/28 (28%), Positives = 14/28 (50%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584 L + G+G LL FG+++ I + Sbjct: 208 LPGVPGVGEKTAATLLAQFGSLEAIVAA 235 >gi|58262688|ref|XP_568754.1| exonuclease [Cryptococcus neoformans var. neoformans JEC21] gi|57223404|gb|AAW41447.1| exonuclease, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 1012 Score = 41.2 bits (95), Expect = 0.50, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 15/27 (55%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISR 583 LD I GIG L++ F +V+ + + Sbjct: 154 LDSIPGIGIKTAHRLMRRFNSVEKLLQ 180 >gi|134108762|ref|XP_777034.1| hypothetical protein CNBB5600 [Cryptococcus neoformans var. neoformans B-3501A] gi|50259717|gb|EAL22387.1| hypothetical protein CNBB5600 [Cryptococcus neoformans var. neoformans B-3501A] Length = 1089 Score = 41.2 bits (95), Expect = 0.50, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 15/27 (55%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISR 583 LD I GIG L++ F +V+ + + Sbjct: 231 LDSIPGIGIKTAHRLMRRFNSVEKLLQ 257 >gi|296139879|ref|YP_003647122.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein [Tsukamurella paurometabola DSM 20162] gi|296028013|gb|ADG78783.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein [Tsukamurella paurometabola DSM 20162] Length = 320 Score = 41.2 bits (95), Expect = 0.50, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 15/32 (46%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 L + GIG LL +G++ I ++ + Sbjct: 215 LPGVPGIGEKTASKLLLQYGSLAAIRDAAAQQ 246 >gi|300771710|ref|ZP_07081585.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC 33861] gi|300761699|gb|EFK58520.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC 33861] Length = 930 Score = 41.2 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 10/23 (43%), Positives = 14/23 (60%) Query: 559 EINGIGPLRKRLLLQSFGTVKMI 581 I GIG + L+Q FG+V+ I Sbjct: 194 GIPGIGEKTAKKLVQDFGSVEGI 216 >gi|70984637|ref|XP_747825.1| DNA repair protein RAD1 [Aspergillus fumigatus Af293] gi|66845452|gb|EAL85787.1| DNA repair protein RAD1, putative [Aspergillus fumigatus Af293] gi|159122608|gb|EDP47729.1| DNA repair protein RAD1, putative [Aspergillus fumigatus A1163] Length = 975 Score = 41.2 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 L + G+ P L+ G + I+ E L I ++ A KI F KN Sbjct: 919 LRAVPGVTPKVLERLILETGNISEIANMDVEQLD--PLIGREAARKIVGFFRKN 970 >gi|261377933|ref|ZP_05982506.1| DNA ligase, NAD-dependent [Neisseria cinerea ATCC 14685] gi|269145793|gb|EEZ72211.1| DNA ligase, NAD-dependent [Neisseria cinerea ATCC 14685] Length = 831 Score = 41.2 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FG+++ + R+ LA + I +A I F ++ Sbjct: 589 GIRHVGERTAKTLAQAFGSLEHVRRAPEPILACLPDIGTVVAHSIAYFFAQDAQQA 644 >gi|152996211|ref|YP_001341046.1| Holliday junction DNA helicase RuvA [Marinomonas sp. MWYL1] gi|189045756|sp|A6VXD2|RUVA_MARMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|150837135|gb|ABR71111.1| Holliday junction DNA helicase RuvA [Marinomonas sp. MWYL1] Length = 200 Score = 41.2 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%) Query: 548 RRKKAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIACKI 603 + ++A + L ++NGIGP +L S + + + S L I G+ KK A ++ Sbjct: 66 KNERALFRVLIKVNGIGPKMALAILSSMSSEELITNVQESDVTALTRIPGVGKKTAERL 124 >gi|170742375|ref|YP_001771030.1| RecD/TraA family helicase [Methylobacterium sp. 4-46] gi|168196649|gb|ACA18596.1| helicase, RecD/TraA family [Methylobacterium sp. 4-46] Length = 736 Score = 41.2 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Query: 562 GIGPLRKRLLLQSFGTVK-MISRSSPETLASIEGISKKIACKIYNH 606 GIGP + ++ +FG+ + ++PE L + GI A ++ Sbjct: 111 GIGPQMAKRIVAAFGSETFAVIEANPERLTEVPGIGPTRAARLVAA 156 >gi|144899097|emb|CAM75961.1| NAD-dependent DNA ligase [Magnetospirillum gryphiswaldense MSR-1] Length = 693 Score = 41.2 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 10/58 (17%) Query: 563 IGPLRKRLLLQSFGTV----KMISRS------SPETLASIEGISKKIACKIYNHFHKN 610 +G + L + +G+ + + + S L SIE I +A I F ++ Sbjct: 536 VGEATAKRLARHYGSFAVWRESMLAAVPRENDSYHDLISIEDIGPAVANDILAFFAED 593 >gi|220927794|ref|YP_002504703.1| DNA integrity scanning protein DisA [Clostridium cellulolyticum H10] gi|219998122|gb|ACL74723.1| protein of unknown function DUF147 [Clostridium cellulolyticum H10] Length = 361 Score = 41.2 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 19/39 (48%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + ++ F ++ + ++S E L +EGI + A I Sbjct: 308 KNMINEFQNLQGVVKASIEDLDKVEGIGEVRAKSITEGL 346 >gi|17978836|gb|AAL47553.1| DNA polymerase [Caldanaerobacter subterraneus subsp. yonseiensis] Length = 871 Score = 41.2 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 10/49 (20%) Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 D I GI G LL+ FG+V+ + L +I +S KI I Sbjct: 187 DNIPGIPNIGEKTAIKLLKEFGSVENL-------LENISKLSGKIKETI 228 >gi|23099511|ref|NP_692977.1| DNA repair protein [Oceanobacillus iheyensis HTE831] gi|22777740|dbj|BAC14012.1| DNA repair protein (RadC family) [Oceanobacillus iheyensis HTE831] Length = 191 Score = 41.2 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 13/63 (20%) Query: 553 AYSPLDEINGIGPLRKR--------LLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 S L IG K+ +L F +K+I ++ E L +I+GI I Sbjct: 34 ILSIL-----IGSGTKQDSVNVLSNRILMHFEGMKLIRDATIEELIAIKGIGTAKGLIIL 88 Query: 605 NHF 607 Sbjct: 89 AAI 91 >gi|333028231|ref|ZP_08456295.1| putative 5'-3' exonuclease [Streptomyces sp. Tu6071] gi|332748083|gb|EGJ78524.1| putative 5'-3' exonuclease [Streptomyces sp. Tu6071] Length = 302 Score = 41.2 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 8/31 (25%), Positives = 15/31 (48%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 L + GIG LL ++G + I ++ + Sbjct: 197 LPGVPGIGEKTAAKLLAAYGDLDGIRAAAAD 227 >gi|318075728|ref|ZP_07983060.1| 5'-3' exonuclease [Streptomyces sp. SA3_actF] Length = 302 Score = 41.2 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 8/31 (25%), Positives = 15/31 (48%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 L + GIG LL ++G + I ++ + Sbjct: 197 LPGVPGIGEKTAAKLLAAYGDLDGIRAAAAD 227 >gi|318059078|ref|ZP_07977801.1| 5'-3' exonuclease [Streptomyces sp. SA3_actG] Length = 309 Score = 41.2 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 8/31 (25%), Positives = 15/31 (48%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 L + GIG LL ++G + I ++ + Sbjct: 204 LPGVPGIGEKTAAKLLAAYGDLDGIRAAAAD 234 >gi|313837329|gb|EFS75043.1| comEA protein [Propionibacterium acnes HL037PA2] gi|314927997|gb|EFS91828.1| comEA protein [Propionibacterium acnes HL044PA1] gi|314971713|gb|EFT15811.1| comEA protein [Propionibacterium acnes HL037PA3] gi|328907123|gb|EGG26889.1| comEA protein [Propionibacterium sp. P08] Length = 280 Score = 41.2 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 14/59 (23%) Query: 554 YSPLDEINGIGPLRKRLLLQ------SFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 S L+ I+G+GP+ ++ F +S + L I GI K KI H Sbjct: 227 QSELETIDGVGPVMAGKIMAWRQEHGQF--------ASVDQLREISGIGAKTFEKIKPH 277 >gi|313764601|gb|EFS35965.1| comEA protein [Propionibacterium acnes HL013PA1] gi|313792291|gb|EFS40392.1| comEA protein [Propionibacterium acnes HL110PA1] gi|313801760|gb|EFS42994.1| comEA protein [Propionibacterium acnes HL110PA2] gi|313816138|gb|EFS53852.1| comEA protein [Propionibacterium acnes HL059PA1] gi|313827959|gb|EFS65673.1| comEA protein [Propionibacterium acnes HL063PA2] gi|313838590|gb|EFS76304.1| comEA protein [Propionibacterium acnes HL086PA1] gi|314915595|gb|EFS79426.1| comEA protein [Propionibacterium acnes HL005PA4] gi|314918449|gb|EFS82280.1| comEA protein [Propionibacterium acnes HL050PA1] gi|314919938|gb|EFS83769.1| comEA protein [Propionibacterium acnes HL050PA3] gi|314931952|gb|EFS95783.1| comEA protein [Propionibacterium acnes HL067PA1] gi|314955819|gb|EFT00219.1| comEA protein [Propionibacterium acnes HL027PA1] gi|314958301|gb|EFT02404.1| comEA protein [Propionibacterium acnes HL002PA1] gi|314962950|gb|EFT07050.1| comEA protein [Propionibacterium acnes HL082PA1] gi|314967976|gb|EFT12075.1| comEA protein [Propionibacterium acnes HL037PA1] gi|315077593|gb|EFT49649.1| comEA protein [Propionibacterium acnes HL053PA2] gi|315098392|gb|EFT70368.1| comEA protein [Propionibacterium acnes HL059PA2] gi|315101252|gb|EFT73228.1| comEA protein [Propionibacterium acnes HL046PA1] gi|315108476|gb|EFT80452.1| comEA protein [Propionibacterium acnes HL030PA2] gi|327450924|gb|EGE97578.1| comEA protein [Propionibacterium acnes HL087PA3] gi|327452997|gb|EGE99651.1| comEA protein [Propionibacterium acnes HL092PA1] gi|327453726|gb|EGF00381.1| comEA protein [Propionibacterium acnes HL083PA2] gi|328754346|gb|EGF67962.1| comEA protein [Propionibacterium acnes HL087PA1] gi|328754924|gb|EGF68540.1| comEA protein [Propionibacterium acnes HL025PA2] Length = 283 Score = 41.2 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 14/59 (23%) Query: 554 YSPLDEINGIGPLRKRLLLQ------SFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 S L+ I+G+GP+ ++ F +S + L I GI K KI H Sbjct: 230 QSELETIDGVGPVMAGKIMAWRQEHGQF--------ASVDQLREISGIGAKTFEKIKPH 280 >gi|302518090|ref|ZP_07270432.1| 5'-3' exonuclease [Streptomyces sp. SPB78] gi|302426985|gb|EFK98800.1| 5'-3' exonuclease [Streptomyces sp. SPB78] Length = 312 Score = 41.2 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 8/31 (25%), Positives = 15/31 (48%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 L + GIG LL ++G + I ++ + Sbjct: 207 LPGVPGIGEKTAAKLLAAYGDLDGIRAAAAD 237 >gi|295839822|ref|ZP_06826755.1| 5'-3' exonuclease [Streptomyces sp. SPB74] gi|295827663|gb|EDY44700.2| 5'-3' exonuclease [Streptomyces sp. SPB74] Length = 312 Score = 41.2 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 8/31 (25%), Positives = 15/31 (48%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 L + GIG LL ++G + I ++ + Sbjct: 207 LPGVPGIGEKTAAKLLAAYGDLDGIRAAAAD 237 >gi|291533539|emb|CBL06652.1| competence protein ComEA helix-hairpin-helix repeat region [Megamonas hypermegale ART12/1] Length = 201 Score = 41.2 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 14/53 (26%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKK 598 A LD + GIGP + ++ F ++ E + +++GI + Sbjct: 146 ATKEDLDTLPGIGPATAQKIIDYRQEHGNFSSI--------EDIKNVKGIGEA 190 >gi|258592992|emb|CBE69303.1| DNA polymerase I (POL I) [NC10 bacterium 'Dutch sediment'] Length = 873 Score = 41.2 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 10/44 (22%) Query: 556 PLDEING---IGPLRKRLLLQSFGTVK-------MISRSSPETL 589 P+D I G IG R L+Q FG ++ I + + Sbjct: 183 PIDNIPGVHGIGEKTARNLIQQFGNIEETVARLHEIKSAKVREI 226 >gi|228999120|ref|ZP_04158702.1| Competence protein ComEA helix-hairpin-helix repeat protein [Bacillus mycoides Rock3-17] gi|229006668|ref|ZP_04164302.1| Competence protein ComEA helix-hairpin-helix repeat protein [Bacillus mycoides Rock1-4] gi|228754529|gb|EEM03940.1| Competence protein ComEA helix-hairpin-helix repeat protein [Bacillus mycoides Rock1-4] gi|228760737|gb|EEM09701.1| Competence protein ComEA helix-hairpin-helix repeat protein [Bacillus mycoides Rock3-17] Length = 199 Score = 41.2 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 8/57 (14%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A+ L++I GIGP + +L+ G + + E L ++GI +K KI + Sbjct: 143 ASKEQLEKITGIGPRKAENILKYREEHGPFQKM-----EDLLEVDGIGEKSLEKIKD 194 >gi|153813174|ref|ZP_01965842.1| hypothetical protein RUMOBE_03590 [Ruminococcus obeum ATCC 29174] gi|149830705|gb|EDM85796.1| hypothetical protein RUMOBE_03590 [Ruminococcus obeum ATCC 29174] Length = 636 Score = 41.2 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603 I GIG +++ FG T +++ PE L+ ++GIS+K A +I Sbjct: 91 IKGIGAALAGRIVRHFGDDTFQIVEN-EPERLSEVKGISEKKAREI 135 >gi|256419758|ref|YP_003120411.1| DNA polymerase I [Chitinophaga pinensis DSM 2588] gi|256034666|gb|ACU58210.1| DNA polymerase I [Chitinophaga pinensis DSM 2588] Length = 939 Score = 41.2 bits (95), Expect = 0.52, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 7/47 (14%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 I G+G LL + +V+ + +A+ + I K+ KI Sbjct: 195 GIPGVGEKTAMKLLSQYHSVEEV-------IANADKIGGKMGEKIKA 234 >gi|261343863|ref|ZP_05971508.1| holliday junction DNA helicase RuvA [Providencia rustigianii DSM 4541] gi|282568250|gb|EFB73785.1| holliday junction DNA helicase RuvA [Providencia rustigianii DSM 4541] Length = 205 Score = 41.2 bits (95), Expect = 0.52, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 7/61 (11%) Query: 548 RRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACK 602 ++++A + L ++NG+GP +L Q F V I + + +L + GI KK A + Sbjct: 66 KQERALFKELIKVNGVGPKLALAILSGMSAQQF--VSAIEQEAISSLVKLPGIGKKTAER 123 Query: 603 I 603 + Sbjct: 124 L 124 >gi|212711936|ref|ZP_03320064.1| hypothetical protein PROVALCAL_03011 [Providencia alcalifaciens DSM 30120] gi|212685458|gb|EEB44986.1| hypothetical protein PROVALCAL_03011 [Providencia alcalifaciens DSM 30120] Length = 205 Score = 41.2 bits (95), Expect = 0.52, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 7/61 (11%) Query: 548 RRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACK 602 ++++A + L ++NG+GP +L Q F V I + + +L + GI KK A + Sbjct: 66 KQERALFKELIKVNGVGPKLALAILSGMSAQQF--VSAIEQEAISSLVKLPGIGKKTAER 123 Query: 603 I 603 + Sbjct: 124 L 124 >gi|183599000|ref|ZP_02960493.1| hypothetical protein PROSTU_02444 [Providencia stuartii ATCC 25827] gi|188021215|gb|EDU59255.1| hypothetical protein PROSTU_02444 [Providencia stuartii ATCC 25827] Length = 205 Score = 41.2 bits (95), Expect = 0.52, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 7/61 (11%) Query: 548 RRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACK 602 ++++A + L ++NG+GP +L Q F V I + + +L + GI KK A + Sbjct: 66 KQERALFKELIKVNGVGPKLALAILSGMSAQQF--VSAIEQEAISSLVKLPGIGKKTAER 123 Query: 603 I 603 + Sbjct: 124 L 124 >gi|167040338|ref|YP_001663323.1| DNA protecting protein DprA [Thermoanaerobacter sp. X514] gi|300914422|ref|ZP_07131738.1| DNA protecting protein DprA [Thermoanaerobacter sp. X561] gi|307724342|ref|YP_003904093.1| DNA protecting protein DprA [Thermoanaerobacter sp. X513] gi|166854578|gb|ABY92987.1| DNA protecting protein DprA [Thermoanaerobacter sp. X514] gi|300889357|gb|EFK84503.1| DNA protecting protein DprA [Thermoanaerobacter sp. X561] gi|307581403|gb|ADN54802.1| DNA protecting protein DprA [Thermoanaerobacter sp. X513] Length = 362 Score = 41.2 bits (95), Expect = 0.52, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 1/58 (1%) Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 R+K L + GIG L++ F T + + ++ + G ++K+ I Sbjct: 3 REKIFKIWLSTVKGIGYKSFVQLMEFFKTAEEVYKAKEIDIFKAIG-NRKLVQNIIEA 59 >gi|51473944|ref|YP_067701.1| DNA polymerase I [Rickettsia typhi str. Wilmington] gi|81550503|sp|Q9RLA0|DPO1_RICTY RecName: Full=DNA polymerase I; Short=POL I gi|5912311|emb|CAB56108.1| DNA polymerase I [Rickettsia typhi] gi|51460256|gb|AAU04219.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str. Wilmington] Length = 872 Score = 41.2 bits (95), Expect = 0.52, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 D I G IGP L+ FG+V+ I S + ++SI+ Sbjct: 186 DNIPGVPSIGPKTASSLITQFGSVENIFN-SLDQISSIK 223 >gi|297562768|ref|YP_003681742.1| helicase, RecD/TraA family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847216|gb|ADH69236.1| helicase, RecD/TraA family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 750 Score = 41.2 bits (95), Expect = 0.52, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 5/59 (8%) Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGT--VKMISRSSPETLASIEGISKKIACKIYNH 606 ++ S L I GIGP ++ FGT +++I PE L + G+ K I + Sbjct: 90 RRYLGSGL--IKGIGPKMAERIVDHFGTDALEVIEE-HPERLIEVPGLGPKRTRLIADA 145 >gi|225851368|ref|YP_002731602.1| DNA ligase, NAD-dependent [Persephonella marina EX-H1] gi|254781385|sp|C0QSF6|DNLJ_PERMH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|225645574|gb|ACO03760.1| DNA ligase, NAD-dependent [Persephonella marina EX-H1] Length = 714 Score = 41.2 bits (95), Expect = 0.52, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 23/50 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + R L ++ V+ + S E L + + +A IY+ FH + Sbjct: 554 VGKVTARTLAENINCVEDLKDWSVEDLERLPDVGYVVAHSIYDFFHNPDN 603 >gi|154686915|ref|YP_001422076.1| Holliday junction DNA helicase RuvA [Bacillus amyloliquefaciens FZB42] gi|308174476|ref|YP_003921181.1| Holliday junction DNA helicase [Bacillus amyloliquefaciens DSM 7] gi|166230516|sp|A7Z769|RUVA_BACA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|154352766|gb|ABS74845.1| RuvA [Bacillus amyloliquefaciens FZB42] gi|307607340|emb|CBI43711.1| Holliday junction DNA helicase [Bacillus amyloliquefaciens DSM 7] gi|328554396|gb|AEB24888.1| Holliday junction DNA helicase RuvA [Bacillus amyloliquefaciens TA208] gi|328912801|gb|AEB64397.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus amyloliquefaciens LL3] Length = 201 Score = 41.2 bits (95), Expect = 0.52, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 9/62 (14%) Query: 548 RRKKAAYSPLDEINGIGPLRKRLLLQSFGT------VKMISRSSPETLASIEGISKKIAC 601 R +KA ++ L + GIGP +L G+ ++ I + L G+ KK A Sbjct: 63 REEKALFTKLLNVTGIGPKGALAIL---GSGDPGAVIEAIEQEDEAFLVKFPGVGKKTAR 119 Query: 602 KI 603 +I Sbjct: 120 QI 121 >gi|328780415|ref|XP_003249798.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase iota [Apis mellifera] Length = 564 Score = 41.2 bits (95), Expect = 0.53, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 3/48 (6%) Query: 559 EINGIGPLRKRLLL-QSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 +I G+G +LL+ + T+ + ++S ETL GI +A K+ + Sbjct: 230 KIPGVGQKTTQLLMSNNIKTIDDLRKTSLETLEMKIGI--DLARKLKD 275 >gi|298486340|ref|ZP_07004403.1| DNA ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159347|gb|EFI00405.1| DNA ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 628 Score = 41.2 bits (95), Expect = 0.53, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 2/52 (3%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I +GP + L FGT++ I + + + +K A + + F ++ Sbjct: 469 IPSVGPGAAQKLADRFGTLEAIISADWLDMRQT--LPEKQAKSVRDFFDESA 518 Score = 38.2 bits (87), Expect = 4.0, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G ++L +S ++ + ++ PE L + + ++A +I++ F Sbjct: 376 GIPDVGEETAKVLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSFF 424 >gi|254412599|ref|ZP_05026372.1| Phospholipase D active site motif domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180334|gb|EDX75325.1| Phospholipase D active site motif domain protein [Microcoleus chthonoplastes PCC 7420] Length = 542 Score = 41.2 bits (95), Expect = 0.53, Method: Composition-based stats. Identities = 7/29 (24%), Positives = 17/29 (58%) Query: 575 FGTVKMISRSSPETLASIEGISKKIACKI 603 F + ++ ++ + L ++ GI K+A +I Sbjct: 479 FRGIVNLNTATQDELETLPGIGPKLAERI 507 >gi|20807355|ref|NP_622526.1| DNA polymerase I [Thermoanaerobacter tengcongensis MB4] gi|20515872|gb|AAM24130.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Thermoanaerobacter tengcongensis MB4] Length = 871 Score = 41.2 bits (95), Expect = 0.53, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 10/49 (20%) Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 D I GI G LL+ FG+V+ + L +I +S KI I Sbjct: 187 DNIPGIPNIGEKTAIKLLKEFGSVENL-------LENISKLSGKIKETI 228 >gi|125973745|ref|YP_001037655.1| helix-hairpin-helix repeat-containing competence protein ComEA [Clostridium thermocellum ATCC 27405] gi|256005749|ref|ZP_05430703.1| competence protein ComEA helix-hairpin-helix repeat protein [Clostridium thermocellum DSM 2360] gi|281417902|ref|ZP_06248922.1| competence protein ComEA helix-hairpin-helix repeat protein [Clostridium thermocellum JW20] gi|125713970|gb|ABN52462.1| competence protein ComEA helix-hairpin-helix repeat protein [Clostridium thermocellum ATCC 27405] gi|255990283|gb|EEU00411.1| competence protein ComEA helix-hairpin-helix repeat protein [Clostridium thermocellum DSM 2360] gi|281409304|gb|EFB39562.1| competence protein ComEA helix-hairpin-helix repeat protein [Clostridium thermocellum JW20] gi|316940060|gb|ADU74094.1| competence protein ComEA helix-hairpin-helix repeat protein [Clostridium thermocellum DSM 1313] Length = 296 Score = 41.2 bits (95), Expect = 0.53, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 14/58 (24%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 LD + GIGP ++ F ++ E + ++ GI + I + Sbjct: 244 ELDSLPGIGPAIAAKIVAYREQNGKFKSI--------EDIMNVSGIGQSKFNNIKDFI 293 >gi|78222110|ref|YP_383857.1| SMF protein [Geobacter metallireducens GS-15] gi|78193365|gb|ABB31132.1| DNA protecting protein DprA [Geobacter metallireducens GS-15] Length = 358 Score = 41.2 bits (95), Expect = 0.53, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 4/59 (6%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 L + +G + R LL+ FG+ + + +S L S++G+S + + H Sbjct: 8 ALKSVPLVGNVLFRRLLERFGSPEAVFGASDVDLRSVKGVSPA----VVASLRSHDPHP 62 >gi|262198909|ref|YP_003270118.1| helicase, RecD/TraA family [Haliangium ochraceum DSM 14365] gi|262082256|gb|ACY18225.1| helicase, RecD/TraA family [Haliangium ochraceum DSM 14365] Length = 768 Score = 41.2 bits (95), Expect = 0.54, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 5/48 (10%) Query: 562 GIGPLRKRLLLQSFGTVKM---ISRSSPETLASIEGISKKIACKIYNH 606 GIGP + +++ FG ++ I ++ P+ L ++GI A KI Sbjct: 132 GIGPELAKRIVEHFG-LEALSVIEKA-PKRLQEVDGIGAARAEKIAEA 177 >gi|229175136|ref|ZP_04302652.1| DNA repair protein radC [Bacillus cereus MM3] gi|228608272|gb|EEK65578.1| DNA repair protein radC [Bacillus cereus MM3] Length = 223 Score = 41.2 bits (95), Expect = 0.54, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 19/38 (50%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +L F ++M+ ++ E L SI G+ A ++ F Sbjct: 65 KILHHFDGLRMLKDATLEELVSIHGVGIAKAAQLIAAF 102 >gi|227514790|ref|ZP_03944839.1| competence protein EA [Lactobacillus fermentum ATCC 14931] gi|227086838|gb|EEI22150.1| competence protein EA [Lactobacillus fermentum ATCC 14931] Length = 222 Score = 41.2 bits (95), Expect = 0.54, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 8/59 (13%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 A L I+GIG + ++ G K + E L +++G K KI + Sbjct: 167 ATKEQLQTIDGIGDKKADKIIAYRQEHGGFK-----TVEDLKNVDGFGDKTVAKIKDRL 220 >gi|184155084|ref|YP_001843424.1| competence protein [Lactobacillus fermentum IFO 3956] gi|260663628|ref|ZP_05864517.1| competence protein [Lactobacillus fermentum 28-3-CHN] gi|183226428|dbj|BAG26944.1| competence protein [Lactobacillus fermentum IFO 3956] gi|260551854|gb|EEX24969.1| competence protein [Lactobacillus fermentum 28-3-CHN] Length = 224 Score = 41.2 bits (95), Expect = 0.54, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 8/59 (13%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 A L I+GIG + ++ G K + E L +++G K KI + Sbjct: 169 ATKEQLQTIDGIGDKKADKIIAYRQEHGGFK-----TVEDLKNVDGFGDKTVAKIKDRL 222 >gi|91776705|ref|YP_546461.1| Holliday junction DNA helicase RuvA [Methylobacillus flagellatus KT] gi|123253965|sp|Q1GYR7|RUVA_METFK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|91710692|gb|ABE50620.1| Holliday junction DNA helicase RuvA [Methylobacillus flagellatus KT] Length = 194 Score = 41.2 bits (95), Expect = 0.54, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 7/63 (11%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACKIYN 605 +A + L ++NG+G +L G +V ++++ + + L + GI KK A ++ Sbjct: 69 RATFRQLLKVNGVGAKSALAILS--GLSVDDLAQAVALQETGLLIKVPGIGKKTAERLLL 126 Query: 606 HFH 608 Sbjct: 127 ELK 129 >gi|62736227|ref|YP_227555.1| putative endonuclease [Candida metapsilosis] gi|62177739|gb|AAX73030.1| putative endonuclease [Candida metapsilosis] gi|170779372|gb|ACB37036.1| hypothetical protein [Candida metapsilosis] Length = 373 Score = 41.2 bits (95), Expect = 0.54, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 19/96 (19%) Query: 8 ECPGVYQMLDIAGRVLYVGKA--YNLQKRIKSYMHSNNHTHRITHMISQINN-------- 57 G+Y +++ R Y+G A NL +R +++ ++N + + ++ + N Sbjct: 86 SKSGIYIIINKVSRNYYIGSAQTNNLYRRFHNHLLTSN--RKGSKIVQRAVNKYGLNNFV 143 Query: 58 ---IRF---TVT-CTEVEALLLEANMIKRLKPRFNI 86 I + VT + E L LE + I L P++NI Sbjct: 144 FAIIEYYPFIVTNDNKQELLALETSYIGLLLPKYNI 179 >gi|284043148|ref|YP_003393488.1| DNA integrity scanning, DisA, linker region [Conexibacter woesei DSM 14684] gi|283947369|gb|ADB50113.1| DNA integrity scanning, DisA, linker region [Conexibacter woesei DSM 14684] Length = 372 Score = 41.2 bits (95), Expect = 0.54, Method: Composition-based stats. Identities = 7/43 (16%), Positives = 21/43 (48%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 + ++Q FG ++ + ++ L +++G+ + A I + Sbjct: 319 QRIVQEFGGLEEMLAATDGELETVDGVGEIRAKDIREGLRRQQ 361 >gi|217967860|ref|YP_002353366.1| DNA integrity scanning protein DisA [Dictyoglomus turgidum DSM 6724] gi|217336959|gb|ACK42752.1| protein of unknown function DUF147 [Dictyoglomus turgidum DSM 6724] Length = 351 Score = 41.2 bits (95), Expect = 0.54, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 19/40 (47%) Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 ++ FG + I SS E L +IEG+ + A KI Sbjct: 303 IEKIVNYFGDLPRILESSFEDLDNIEGVGEVRAKKIREAL 342 >gi|160934210|ref|ZP_02081597.1| hypothetical protein CLOLEP_03081 [Clostridium leptum DSM 753] gi|156866883|gb|EDO60255.1| hypothetical protein CLOLEP_03081 [Clostridium leptum DSM 753] Length = 251 Score = 41.2 bits (95), Expect = 0.54, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 16/36 (44%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 LL+ FG+ + + E L +GI + A I Sbjct: 52 LLEGFGSFPALLDAPIEELMKYKGIGRGSAITIKLF 87 >gi|90419162|ref|ZP_01227072.1| DNA repair protein [Aurantimonas manganoxydans SI85-9A1] gi|90336099|gb|EAS49840.1| DNA repair protein [Aurantimonas manganoxydans SI85-9A1] Length = 257 Score = 41.2 bits (95), Expect = 0.54, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 17/35 (48%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 + L+ FG++ + + P L + G+ +A I Sbjct: 81 KALIARFGSLGEVLNAPPRRLTEVPGVKDSVARDI 115 >gi|326383083|ref|ZP_08204772.1| DNA integrity scanning protein DisA [Gordonia neofelifaecis NRRL B-59395] gi|326198219|gb|EGD55404.1| DNA integrity scanning protein DisA [Gordonia neofelifaecis NRRL B-59395] Length = 367 Score = 41.2 bits (95), Expect = 0.55, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 19/38 (50%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L++ FGT++ + SS L S+EGI A I Sbjct: 318 RLVRHFGTLQSLLASSAADLESVEGIGSIWARHIREGL 355 >gi|299783520|gb|ADJ41518.1| DNA ligase, NAD-dependent [Lactobacillus fermentum CECT 5716] Length = 679 Score = 41.2 bits (95), Expect = 0.55, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 23/56 (41%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G +LL F +V + + T+++++ I I + +F H Sbjct: 522 GIRHVGAKVAQLLAAEFKSVDALMAADAATISAVDSIGPIIGDAVATYFQNEQVHQ 577 >gi|260662792|ref|ZP_05863686.1| DNA ligase, NAD-dependent [Lactobacillus fermentum 28-3-CHN] gi|260552873|gb|EEX25872.1| DNA ligase, NAD-dependent [Lactobacillus fermentum 28-3-CHN] Length = 679 Score = 41.2 bits (95), Expect = 0.55, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 23/56 (41%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G +LL F +V + + T+++++ I I + +F H Sbjct: 522 GIRHVGAKVAQLLAAEFKSVDALMAADAATISAVDSIGPIIGDAVATYFQNEQVHQ 577 >gi|229093550|ref|ZP_04224652.1| DNA repair protein radC [Bacillus cereus Rock3-42] gi|228689880|gb|EEL43685.1| DNA repair protein radC [Bacillus cereus Rock3-42] Length = 208 Score = 41.2 bits (95), Expect = 0.55, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 19/38 (50%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +L F ++M+ ++ E L SI G+ A ++ F Sbjct: 50 KILHHFDGLRMLKDATLEELVSIHGVGVAKATQLIAAF 87 >gi|227536005|ref|ZP_03966054.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC 33300] gi|227244118|gb|EEI94133.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC 33300] Length = 930 Score = 41.2 bits (95), Expect = 0.55, Method: Composition-based stats. Identities = 10/23 (43%), Positives = 14/23 (60%) Query: 559 EINGIGPLRKRLLLQSFGTVKMI 581 I GIG + L+Q FG+V+ I Sbjct: 194 GIPGIGEKTAKKLVQDFGSVEGI 216 >gi|227515527|ref|ZP_03945576.1| DNA ligase (NAD(+)) [Lactobacillus fermentum ATCC 14931] gi|227086140|gb|EEI21452.1| DNA ligase (NAD(+)) [Lactobacillus fermentum ATCC 14931] Length = 679 Score = 41.2 bits (95), Expect = 0.55, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 23/56 (41%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G +LL F +V + + T+++++ I I + +F H Sbjct: 522 GIRHVGAKVAQLLAAEFKSVDALMAADAATISAVDSIGPIIGDAVATYFQNEQVHQ 577 >gi|184155951|ref|YP_001844291.1| NAD-dependent DNA ligase [Lactobacillus fermentum IFO 3956] gi|254781353|sp|B2GDS9|DNLJ_LACF3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|183227295|dbj|BAG27811.1| NAD-dependent DNA ligase [Lactobacillus fermentum IFO 3956] Length = 679 Score = 41.2 bits (95), Expect = 0.55, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 23/56 (41%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G +LL F +V + + T+++++ I I + +F H Sbjct: 522 GIRHVGAKVAQLLAAEFKSVDALMAADAATISAVDSIGPIIGDAVATYFQNEQVHQ 577 >gi|313890729|ref|ZP_07824354.1| comEA protein [Streptococcus pseudoporcinus SPIN 20026] gi|313120830|gb|EFR43944.1| comEA protein [Streptococcus pseudoporcinus SPIN 20026] Length = 194 Score = 41.2 bits (95), Expect = 0.55, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 8/52 (15%) Query: 557 LDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 L +I GIG R + ++ +S G K + E L I GI +K K+ + Sbjct: 143 LTKIPGIGAKRAKEIIDVRESQGGFKKL-----EDLLKISGIGQKTLEKLKD 189 >gi|311069405|ref|YP_003974328.1| DNA polymerase I [Bacillus atrophaeus 1942] gi|310869922|gb|ADP33397.1| DNA polymerase I [Bacillus atrophaeus 1942] Length = 880 Score = 41.2 bits (95), Expect = 0.55, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + G+G LL+ F +V+ + E++ + G KK+ K+ Sbjct: 194 GVPGVGEKTAIKLLKQFHSVEKL----LESIGEVSG--KKLKEKLEEF 235 >gi|306821142|ref|ZP_07454758.1| RecD/TraA family helicase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550835|gb|EFM38810.1| RecD/TraA family helicase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 761 Score = 41.2 bits (95), Expect = 0.55, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%) Query: 560 INGIGPLRKRLLLQSF--GTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 I G+G + ++ F T+++I + +PE L I+GI K KI +H+ Sbjct: 90 IEGVGEKYAKKIIDIFQEKTLEIIEK-TPEKLLEIDGIGPKKLDKIITSYHE 140 >gi|196039378|ref|ZP_03106684.1| DNA repair protein [Bacillus cereus NVH0597-99] gi|196030005|gb|EDX68606.1| DNA repair protein [Bacillus cereus NVH0597-99] Length = 208 Score = 41.2 bits (95), Expect = 0.55, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 19/38 (50%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +L F ++M+ ++ E L SI G+ A ++ F Sbjct: 50 KILHHFDGLRMLKDATLEELVSIHGVGVAKATQLIAAF 87 >gi|312870465|ref|ZP_07730585.1| Holliday junction DNA helicase RuvA [Lactobacillus oris PB013-T2-3] gi|311094022|gb|EFQ52346.1| Holliday junction DNA helicase RuvA [Lactobacillus oris PB013-T2-3] Length = 197 Score = 41.2 bits (95), Expect = 0.55, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Query: 551 KAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKI 603 K + L ++GIGP +L G V I+ ++ L GI KK A +I Sbjct: 68 KRLFMQLINVSGIGPKSALAILANPDHQGLVDAIANNNIGYLTKFPGIGKKTASQI 123 >gi|309805867|ref|ZP_07699902.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 03V1-b] gi|308167776|gb|EFO69920.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 03V1-b] Length = 567 Score = 41.2 bits (95), Expect = 0.55, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I+ +G RL+ Q F + I S L I+ I + IA + +F + + Sbjct: 408 GIDHVGAKAARLIAQKFHDLNTIRECSIADLMQIDTIGQAIAESMVKYFEQQS 460 >gi|157150014|ref|YP_001450670.1| NAD-dependent DNA ligase LigA [Streptococcus gordonii str. Challis substr. CH1] gi|190359295|sp|A8AY10|DNLJ_STRGC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157074808|gb|ABV09491.1| DNA ligase, NAD-dependent [Streptococcus gordonii str. Challis substr. CH1] Length = 652 Score = 41.2 bits (95), Expect = 0.55, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 28/52 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 I +G R+LL+ F + ++++ E + SI+ + IA ++++F + Sbjct: 502 GIRHVGSKASRILLEKFHDIPSLAQAEQEEIVSIDSLGMVIAKSLHSYFAQE 553 Score = 37.8 bits (86), Expect = 5.1, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 559 EINGIGPLRKRLLLQS--FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I+G+GP L V I R + E L +E +K A K+YN + S++ Sbjct: 436 NISGLGPAVVEKLFAKDLVRDVAGIYRLNIEDLLQLENFKEKSANKLYNAIQASKSNS 493 >gi|325274411|ref|ZP_08140498.1| NAD-dependent DNA ligase LigA [Pseudomonas sp. TJI-51] gi|324100446|gb|EGB98205.1| NAD-dependent DNA ligase LigA [Pseudomonas sp. TJI-51] Length = 776 Score = 41.2 bits (95), Expect = 0.56, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 27/49 (55%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G ++L +S G++ + ++ P+ L + I ++A +I+N F Sbjct: 526 GIPDVGEETAKVLARSLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFF 574 >gi|313623714|gb|EFR93861.1| ComEA family DNA-binding protein [Listeria innocua FSL J1-023] Length = 200 Score = 41.2 bits (95), Expect = 0.56, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 A L ++ GIG + +++ + + + + E L ++ GI +K K+ + Sbjct: 144 ATKVDLQQVPGIGDSKATAIIEY-REKEGLFQ-TIEDLKNVTGIGEKTVEKLKEYL 197 >gi|313497885|gb|ADR59251.1| LigA [Pseudomonas putida BIRD-1] Length = 776 Score = 41.2 bits (95), Expect = 0.56, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 27/49 (55%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G ++L +S G++ + ++ P+ L + I ++A +I+N F Sbjct: 526 GIPDVGEETAKVLARSLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFF 574 >gi|148546832|ref|YP_001266934.1| NAD-dependent DNA ligase LigA [Pseudomonas putida F1] gi|190359274|sp|A5W0U0|DNLJ_PSEP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|148510890|gb|ABQ77750.1| DNA ligase, NAD-dependent [Pseudomonas putida F1] Length = 776 Score = 41.2 bits (95), Expect = 0.56, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 27/49 (55%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G ++L +S G++ + ++ P+ L + I ++A +I+N F Sbjct: 526 GIPDVGEETAKVLARSLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFF 574 >gi|167034833|ref|YP_001670064.1| NAD-dependent DNA ligase LigA [Pseudomonas putida GB-1] gi|190359275|sp|B0KPX3|DNLJ_PSEPG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166861321|gb|ABY99728.1| DNA ligase, NAD-dependent [Pseudomonas putida GB-1] Length = 776 Score = 41.2 bits (95), Expect = 0.56, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 27/49 (55%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G ++L +S G++ + ++ P+ L + I ++A +I+N F Sbjct: 526 GIPDVGEETAKVLARSLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFF 574 >gi|170722763|ref|YP_001750451.1| NAD-dependent DNA ligase LigA [Pseudomonas putida W619] gi|254781396|sp|B1JC06|DNLJ_PSEPW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|169760766|gb|ACA74082.1| DNA ligase, NAD-dependent [Pseudomonas putida W619] Length = 776 Score = 41.2 bits (95), Expect = 0.56, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 27/49 (55%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G ++L +S G++ + ++ P+ L + I ++A +I+N F Sbjct: 526 GIPDVGEETAKVLARSLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFF 574 >gi|104780921|ref|YP_607419.1| NAD-dependent DNA ligase LigA [Pseudomonas entomophila L48] gi|122985912|sp|Q1ICK0|DNLJ_PSEE4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|95109908|emb|CAK14613.1| NAD-dependent DNA ligase [Pseudomonas entomophila L48] Length = 784 Score = 41.2 bits (95), Expect = 0.56, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 26/49 (53%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G ++L +S G++ + + P+ L + I ++A +I+N F Sbjct: 534 GIPDVGEETAKVLARSLGSLARVQVALPQVLTYLPDIGLEVAHEIHNFF 582 Score = 40.5 bits (93), Expect = 0.80, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 2/55 (3%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 +I +GP L+ GT+ I + L ++ K A + F + Sbjct: 625 DIPSVGPTGAEKLVDKLGTLDKIIAADGIDLRQA--LNTKQAEGVREFFRDEANQ 677 >gi|26990965|ref|NP_746390.1| NAD-dependent DNA ligase LigA [Pseudomonas putida KT2440] gi|81439923|sp|Q88F25|DNLJ_PSEPK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|24985989|gb|AAN69854.1|AE016624_5 DNA ligase, NAD-dependent [Pseudomonas putida KT2440] Length = 776 Score = 41.2 bits (95), Expect = 0.56, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 27/49 (55%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G ++L +S G++ + ++ P+ L + I ++A +I+N F Sbjct: 526 GIPDVGEETAKVLARSLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFF 574 >gi|315653834|ref|ZP_07906750.1| NAD-dependent DNA ligase LigA [Lactobacillus iners ATCC 55195] gi|315488530|gb|EFU78176.1| NAD-dependent DNA ligase LigA [Lactobacillus iners ATCC 55195] Length = 672 Score = 41.2 bits (95), Expect = 0.56, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I+ +G RL+ Q F + I S L I+ I + IA + +F + + Sbjct: 513 GIDHVGAKAARLIAQKFHDLNTIRECSIADLMQIDTIGQAIAESMVKYFEQQS 565 >gi|313668860|ref|YP_004049144.1| DNA ligase [Neisseria lactamica ST-640] gi|313006322|emb|CBN87785.1| putative DNA ligase [Neisseria lactamica 020-06] Length = 827 Score = 41.2 bits (95), Expect = 0.56, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FGT++ + R+ LA + I +A I + F + Sbjct: 592 GIRHVGERTAKTLAQAFGTLERVRRAPEPILACLPDIGTVVAHSIAHFFAQAEQQA 647 >gi|309378943|emb|CBX22396.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 827 Score = 41.2 bits (95), Expect = 0.56, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 I +G + L Q+FGT++ + R+ LA + I +A I + F + Sbjct: 592 GIRHVGERTAKTLAQAFGTLERVRRAPEPILACLPDIGTVVAHSIAHFFAQAEQQA 647 >gi|297380083|gb|ADI34970.1| Holliday junction DNA helicase RuvA [Helicobacter pylori v225d] Length = 183 Score = 41.2 bits (95), Expect = 0.56, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 7/58 (12%) Query: 551 KAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACKI 603 K + L +ING+G +L F ++ + L + GI KK+A KI Sbjct: 68 KILFERLLKINGVGGRIALAILSSFSPNEFESIIATKE--VKRLQQVPGIGKKLADKI 123 >gi|289679601|ref|ZP_06500491.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae FF5] Length = 261 Score = 41.2 bits (95), Expect = 0.56, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 I +GP + L FGT++ I + + +S+K A + + F + + Sbjct: 103 IPSVGPGAAQKLADRFGTLEAIISADWLDMRQA--LSEKQAKSVRDFFDDSAN 153 Score = 38.5 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 27/49 (55%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G ++L +S +++ + ++ PE L + + ++A +I++ F Sbjct: 10 GIPDVGEETAKVLARSLASLERVKQALPEVLTYLPDVGLEVAYEIHSFF 58 >gi|146309768|ref|YP_001174842.1| DNA repair protein RadC [Enterobacter sp. 638] gi|166918667|sp|A4W511|Y101_ENT38 RecName: Full=UPF0758 protein Ent638_0101 gi|145316644|gb|ABP58791.1| DNA replication and repair protein RadC [Enterobacter sp. 638] Length = 221 Score = 41.2 bits (95), Expect = 0.56, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 2/33 (6%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601 + LLQ FG++ + ++ + +EGI +A Sbjct: 45 QELLQHFGSLHGLLNANLDEFRYVEGIG--LAK 75 >gi|134098839|ref|YP_001104500.1| potential 5'-3' exonuclease [Saccharopolyspora erythraea NRRL 2338] gi|291005803|ref|ZP_06563776.1| 5'-3' exonuclease [Saccharopolyspora erythraea NRRL 2338] gi|133911462|emb|CAM01575.1| potential 5'-3' exonuclease [Saccharopolyspora erythraea NRRL 2338] Length = 305 Score = 41.2 bits (95), Expect = 0.56, Method: Composition-based stats. Identities = 8/31 (25%), Positives = 15/31 (48%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587 L + GIG L+ FG++ + ++ E Sbjct: 200 LPGVAGIGEKTAAKLITQFGSLDALLAAAVE 230 >gi|309813094|ref|ZP_07706818.1| 5'-3' exonuclease, SAM domain protein [Dermacoccus sp. Ellin185] gi|308432898|gb|EFP56806.1| 5'-3' exonuclease, SAM domain protein [Dermacoccus sp. Ellin185] Length = 308 Score = 41.2 bits (95), Expect = 0.57, Method: Composition-based stats. Identities = 8/28 (28%), Positives = 13/28 (46%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584 L + GIG L+ FG++ I + Sbjct: 203 LPGVAGIGEKTAAALIAEFGSLAAIRDA 230 >gi|309803834|ref|ZP_07697919.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 11V1-d] gi|312870780|ref|ZP_07730886.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 3008A-a] gi|312873110|ref|ZP_07733169.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2062A-h1] gi|308164068|gb|EFO66330.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 11V1-d] gi|311091343|gb|EFQ49728.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2062A-h1] gi|311093656|gb|EFQ51994.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 3008A-a] Length = 672 Score = 41.2 bits (95), Expect = 0.57, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I+ +G RL+ Q F + I S L I+ I + IA + +F + + Sbjct: 513 GIDHVGAKAARLIAQKFHDLNTIRECSIADLMQIDTIGQAIAESMVKYFEQQS 565 >gi|24379098|ref|NP_721053.1| putative competence protein [Streptococcus mutans UA159] gi|24376999|gb|AAN58359.1|AE014906_5 putative competence protein [Streptococcus mutans UA159] Length = 225 Score = 41.2 bits (95), Expect = 0.57, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 12/59 (20%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +L + S + L +I GI K K+ + Sbjct: 169 ATLADLQTISGIGEKKAQDILDY-------REANGGFKSVDDLKNISGIGDKTFEKLKD 220 >gi|108804357|ref|YP_644294.1| competence protein ComEA helix-hairpin-helix region [Rubrobacter xylanophilus DSM 9941] gi|108765600|gb|ABG04482.1| Competence protein ComEA helix-hairpin-helix region [Rubrobacter xylanophilus DSM 9941] Length = 107 Score = 41.2 bits (95), Expect = 0.57, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 12/53 (22%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKI 603 L+E+ +GP +++ + + E L + GI +I Sbjct: 56 ELEELPEVGPATAEAIIEY-------RLANGPFRTVEELEEVPGIGPATLEQI 101 >gi|325922731|ref|ZP_08184469.1| 5'-3' exonuclease (including N-terminal domain of PolI) [Xanthomonas gardneri ATCC 19865] gi|325546798|gb|EGD17914.1| 5'-3' exonuclease (including N-terminal domain of PolI) [Xanthomonas gardneri ATCC 19865] Length = 328 Score = 41.2 bits (95), Expect = 0.57, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 4/35 (11%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETL 589 D I G IG +LL FG++ + + L Sbjct: 202 DNIPGVTGIGAKSAAILLAHFGSLDALLE-RVDEL 235 >gi|313895725|ref|ZP_07829281.1| helicase, RecD/TraA family [Selenomonas sp. oral taxon 137 str. F0430] gi|312975851|gb|EFR41310.1| helicase, RecD/TraA family [Selenomonas sp. oral taxon 137 str. F0430] Length = 724 Score = 41.2 bits (95), Expect = 0.58, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603 I+G+GP R ++ FG + +I + P L + GI K KI Sbjct: 101 IDGVGPAMARRIVDRFGAKSFAIIETA-PHRLKEVPGIGAKTLKKI 145 >gi|218780589|ref|YP_002431907.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01] gi|218761973|gb|ACL04439.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01] Length = 889 Score = 41.2 bits (95), Expect = 0.58, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591 + GIGP L+Q FG+++ + ET+ Sbjct: 187 GVPGIGPKTAIALIQEFGSLEGVYE-GVETITK 218 >gi|160902691|ref|YP_001568272.1| helix-hairpin-helix repeat-containing competence protein ComEA [Petrotoga mobilis SJ95] gi|160360335|gb|ABX31949.1| competence protein ComEA helix-hairpin-helix repeat protein [Petrotoga mobilis SJ95] Length = 171 Score = 41.2 bits (95), Expect = 0.58, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 39/90 (43%) Query: 556 PLDEINGIGPLRKRLLLQS----------------------FGTVK-------------- 579 L + GIGP + + ++ F +K Sbjct: 51 ELIRLPGIGPAKAQAIINYRQEKGFREIEDIMNVSGIGEKTFSNIKDYIYLSEVIYEIVD 110 Query: 580 ---MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S E L S+ GI K A KI + Sbjct: 111 EKININEASSEELESLPGIGKVSAQKIIEY 140 >gi|71282215|ref|YP_270212.1| exonuclease IX [Colwellia psychrerythraea 34H] gi|123631612|sp|Q47YA8|XNI_COLP3 RecName: Full=Protein Xni gi|71147955|gb|AAZ28428.1| exodeoxyribonuclease IX [Colwellia psychrerythraea 34H] Length = 290 Score = 41.2 bits (95), Expect = 0.58, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 8/54 (14%) Query: 554 YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + ++ ++GIG + LL +G++K I ++ L +A K+ Sbjct: 197 TNKIEGVSGIGQVTAAKLLNQYGSLKAILEAT--DLK------DSLAEKLTQSL 242 >gi|291514827|emb|CBK64037.1| DNA protecting protein DprA [Alistipes shahii WAL 8301] Length = 366 Score = 40.9 bits (94), Expect = 0.58, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 20/43 (46%) Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 GIG LL+ FG + I ++ + L + G+ A +I Sbjct: 12 PGIGIKGAVHLLELFGDARSIFAATADELVAKAGLRPDTAQQI 54 >gi|269215934|ref|ZP_06159788.1| DNA polymerase I [Slackia exigua ATCC 700122] gi|269130193|gb|EEZ61271.1| DNA polymerase I [Slackia exigua ATCC 700122] Length = 905 Score = 40.9 bits (94), Expect = 0.58, Method: Composition-based stats. Identities = 9/25 (36%), Positives = 15/25 (60%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISR 583 + GIGP LLQ++G++ I + Sbjct: 193 GVPGIGPKTATKLLQAYGSMDGIYK 217 >gi|218905656|ref|YP_002453490.1| DNA repair protein [Bacillus cereus AH820] gi|218538266|gb|ACK90664.1| DNA repair protein [Bacillus cereus AH820] Length = 186 Score = 40.9 bits (94), Expect = 0.58, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 19/38 (50%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +L F ++M+ ++ E L SI G+ A ++ F Sbjct: 50 KILHHFDGLRMLKDATLEELVSIHGVGIAKATQLIAAF 87 >gi|15645501|ref|NP_207676.1| Holliday junction DNA helicase RuvA [Helicobacter pylori 26695] gi|3122834|sp|O25549|RUVA_HELPY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|2314020|gb|AAD07932.1| Holliday junction DNA helicase (ruvA) [Helicobacter pylori 26695] Length = 183 Score = 40.9 bits (94), Expect = 0.58, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 7/58 (12%) Query: 551 KAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACKI 603 K + L +ING+G +L F ++ + L + GI KK+A KI Sbjct: 68 KILFERLLKINGVGGRIALAILSSFSPNEFESIIATKE--VKRLQQVPGIGKKLADKI 123 >gi|330800435|ref|XP_003288242.1| hypothetical protein DICPUDRAFT_152457 [Dictyostelium purpureum] gi|325081750|gb|EGC35255.1| hypothetical protein DICPUDRAFT_152457 [Dictyostelium purpureum] Length = 835 Score = 40.9 bits (94), Expect = 0.59, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 3/64 (4%) Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRS-SPETLASIEGISKKIACKIYN 605 + + S L I GIG ++L Q F + + + S +++ + + ++ + IYN Sbjct: 643 KSRGLSSLLCGMGIPGIGRANSKILAQKFQHLDNLINAPSIQSIENQSKLGRQTSEAIYN 702 Query: 606 HFHK 609 +F+ Sbjct: 703 YFNP 706 >gi|227523032|ref|ZP_03953081.1| NAD-dependent DNA ligase [Lactobacillus hilgardii ATCC 8290] gi|227089850|gb|EEI25162.1| NAD-dependent DNA ligase [Lactobacillus hilgardii ATCC 8290] Length = 675 Score = 40.9 bits (94), Expect = 0.59, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G RL+ Q F + + ++ + +A I+ + IA + +F Sbjct: 516 GIRHVGAKAARLIAQRFKNIDKVMDATAQEIAEIDTMGMIIADSVVTYF 564 >gi|227512904|ref|ZP_03942953.1| NAD-dependent DNA ligase [Lactobacillus buchneri ATCC 11577] gi|227083904|gb|EEI19216.1| NAD-dependent DNA ligase [Lactobacillus buchneri ATCC 11577] Length = 675 Score = 40.9 bits (94), Expect = 0.59, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G RL+ Q F + + ++ + +A I+ + IA + +F Sbjct: 516 GIRHVGAKAARLIAQRFKNIDKVMDATAQEIAEIDTMGMIIADSVVTYF 564 >gi|114569594|ref|YP_756274.1| DNA repair protein RadC [Maricaulis maris MCS10] gi|114340056|gb|ABI65336.1| DNA repair protein RadC [Maricaulis maris MCS10] Length = 226 Score = 40.9 bits (94), Expect = 0.59, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 26/79 (32%) Query: 543 TTHRKRRKKAAYS---------PLDE------INGIGPLRK------RLLLQSFGTVKMI 581 T HR R ++ S L E I R+ + L+ FG + + Sbjct: 8 TGHRDRLREKLTSAGGLALHDYELLELYLFRCIP-----RRDVKPIAKDLIARFGDLGGV 62 Query: 582 SRSSPETLASIEGISKKIA 600 + +S L+S+ G+S+K A Sbjct: 63 ASASVGQLSSVRGVSEKTA 81 >gi|86138472|ref|ZP_01057046.1| hypothetical protein MED193_05191 [Roseobacter sp. MED193] gi|85824997|gb|EAQ45198.1| hypothetical protein MED193_05191 [Roseobacter sp. MED193] Length = 240 Score = 40.9 bits (94), Expect = 0.59, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 3/47 (6%) Query: 562 GIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH 606 G+GP + L G TV+ ++ + E L +I GI A ++ Sbjct: 9 GVGPALAKTLKDH-GLLTVEAVAAAPLEDLKAIPGIGAARAMRLKQA 54 >gi|269215626|ref|ZP_06159480.1| competence protein [Slackia exigua ATCC 700122] gi|269131113|gb|EEZ62188.1| competence protein [Slackia exigua ATCC 700122] Length = 258 Score = 40.9 bits (94), Expect = 0.59, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 10/56 (17%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISR----SSPETLASIEGISKKIACKIYNHF 607 LD I G+GP R + V+ + SS + + +EGI KK ++ + Sbjct: 207 ALDRIPGVGPATARAI------VEEREKSGPFSSVDDITRVEGIGKKKLERMRDSL 256 >gi|290580890|ref|YP_003485282.1| putative competence protein [Streptococcus mutans NN2025] gi|254997789|dbj|BAH88390.1| putative competence protein [Streptococcus mutans NN2025] Length = 226 Score = 40.9 bits (94), Expect = 0.59, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 12/59 (20%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605 A + L I+GIG + + +L + S + L +I GI K K+ + Sbjct: 170 ATLADLQTISGIGEKKAQDILDY-------REANGGFKSVDDLKNISGIGDKTFEKLKD 221 >gi|229553780|ref|ZP_04442505.1| crossover junction endoribonuclease subunit A [Lactobacillus rhamnosus LMS2-1] gi|229312854|gb|EEN78827.1| crossover junction endoribonuclease subunit A [Lactobacillus rhamnosus LMS2-1] Length = 212 Score = 40.9 bits (94), Expect = 0.59, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIACKI 603 K ++ L + GIGP +L + + I++ + L GI KK A +I Sbjct: 80 KRTFNQLLSVTGIGPKSALAILANVSSGGLATAIAQDDVKFLTKFPGIGKKTAAQI 135 >gi|206895219|ref|YP_002247779.1| DNA repair protein [Coprothermobacter proteolyticus DSM 5265] gi|229485550|sp|B5Y6A0|Y1522_COPPD RecName: Full=UPF0758 protein COPRO5265_1522 gi|206737836|gb|ACI16914.1| DNA repair protein [Coprothermobacter proteolyticus DSM 5265] Length = 235 Score = 40.9 bits (94), Expect = 0.59, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 16/28 (57%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGIS 596 R LL +FG + R+S E L I+G+ Sbjct: 55 RRLLNTFGGFTGLYRASVEELLQIKGMG 82 >gi|199598072|ref|ZP_03211495.1| Holliday junction resolvasome, DNA-binding subunit [Lactobacillus rhamnosus HN001] gi|258507747|ref|YP_003170498.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus GG] gi|258538937|ref|YP_003173436.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus Lc 705] gi|84627155|gb|ABC59820.1| RuvA [Lactobacillus rhamnosus GG] gi|199590998|gb|EDY99081.1| Holliday junction resolvasome, DNA-binding subunit [Lactobacillus rhamnosus HN001] gi|257147674|emb|CAR86647.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus GG] gi|257150613|emb|CAR89585.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus Lc 705] gi|259649095|dbj|BAI41257.1| holliday junction DNA helicase RuvA [Lactobacillus rhamnosus GG] Length = 198 Score = 40.9 bits (94), Expect = 0.59, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIACKI 603 K ++ L + GIGP +L + + I++ + L GI KK A +I Sbjct: 66 KRTFNQLLSVTGIGPKSALAILANVSSGGLATAIAQDDVKFLTKFPGIGKKTAAQI 121 >gi|117923573|ref|YP_864190.1| DNA repair protein RadC [Magnetococcus sp. MC-1] gi|117607329|gb|ABK42784.1| DNA repair protein RadC [Magnetococcus sp. MC-1] Length = 241 Score = 40.9 bits (94), Expect = 0.59, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 20/34 (58%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 L+Q FG++ + + P LA++EG+ + A I Sbjct: 59 RLMQRFGSLSAVMEADPVDLATVEGMGETAALFI 92 >gi|332671254|ref|YP_004454262.1| DNA ligase, NAD-dependent [Cellulomonas fimi ATCC 484] gi|332340292|gb|AEE46875.1| DNA ligase, NAD-dependent [Cellulomonas fimi ATCC 484] Length = 834 Score = 40.9 bits (94), Expect = 0.60, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 7/56 (12%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISR-------SSPETLASIEGISKKIACKIYNHF 607 I +GP R L Q F ++ + ++ E L+ ++G+ IA + + F Sbjct: 627 SIRNVGPTAARALAQEFRSMAALREVVEGDPVAAAERLSGVDGVGPTIAQSLVDWF 682 >gi|297154346|gb|ADI04058.1| PHP domain protein [Streptomyces bingchenggensis BCW-1] Length = 580 Score = 40.9 bits (94), Expect = 0.60, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 20/82 (24%) Query: 541 AITTH-RKRRKKAAYSPLD-----EINGIGPLRKRLLLQSF--GTV---KMISRS---SP 586 AI H R S LD EI G+G +++ G+V + + Sbjct: 38 AIGGHPR------DVSELDAKGLREIPGVGKSIADKVVEYLRTGSVPAVDEVRAAIPAGV 91 Query: 587 ETLASIEGISKKIACKIYNHFH 608 L +I + K A +Y H Sbjct: 92 RQLTAIPALGPKKAMLLYEELH 113 >gi|284101344|ref|ZP_06386017.1| DNA-binding protein [Candidatus Poribacteria sp. WGA-A3] gi|283830358|gb|EFC34584.1| DNA-binding protein [Candidatus Poribacteria sp. WGA-A3] Length = 241 Score = 40.9 bits (94), Expect = 0.60, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Query: 573 QSFGTVKMISRSSPETLASIEGISKKIACKIYNHF-H-KNTSHTP 615 + F T+ ++ ++ L +++G+ K A I N H K+TS P Sbjct: 188 RKFKTLDRVNTAAVGELQAVDGVGKARASTIKNTLAHMKSTSVQP 232 >gi|196248984|ref|ZP_03147684.1| competence protein ComEA helix-hairpin-helix repeat protein [Geobacillus sp. G11MC16] gi|196211860|gb|EDY06619.1| competence protein ComEA helix-hairpin-helix repeat protein [Geobacillus sp. G11MC16] Length = 203 Score = 40.9 bits (94), Expect = 0.60, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 8/55 (14%) Query: 556 PLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L ++ GIGP + + ++ G + + E L + GI +K K+ + Sbjct: 151 ELMQVPGIGPAKAKAIIAYREEHGPFQRV-----EDLLRVNGIGEKTLEKLKPYL 200 Score = 39.7 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 6/27 (22%), Positives = 12/27 (44%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 ++ ++ E L + GI A I + Sbjct: 143 AVNTATAEELMQVPGIGPAKAKAIIAY 169 >gi|138896090|ref|YP_001126543.1| late competence protein ComEA [Geobacillus thermodenitrificans NG80-2] gi|134267603|gb|ABO67798.1| Late competence protein ComEA [Geobacillus thermodenitrificans NG80-2] Length = 203 Score = 40.9 bits (94), Expect = 0.60, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 8/55 (14%) Query: 556 PLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L ++ GIGP + + ++ G + + E L + GI +K K+ + Sbjct: 151 ELMQVPGIGPAKAKAIIAYREEHGPFQRV-----EDLLRVNGIGEKTLEKLKPYL 200 Score = 39.7 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 6/27 (22%), Positives = 12/27 (44%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 ++ ++ E L + GI A I + Sbjct: 143 AVNTATAEELMQVPGIGPAKAKAIIAY 169 >gi|254423394|ref|ZP_05037112.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335] gi|196190883|gb|EDX85847.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335] Length = 920 Score = 40.9 bits (94), Expect = 0.61, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 4/36 (11%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590 D I G IG LL ++G ++ I +S + L Sbjct: 152 DNIPGVKGIGKKTAVKLLDTYGDLETIY-ASIDELK 186 >gi|194017433|ref|ZP_03056044.1| DNA integrity scanning protein [Bacillus pumilus ATCC 7061] gi|194010705|gb|EDW20276.1| DNA integrity scanning protein [Bacillus pumilus ATCC 7061] Length = 359 Score = 40.9 bits (94), Expect = 0.61, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 16/35 (45%) Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 FG + I + + L +EGI + A KI + Sbjct: 314 FGVLDRIMEADVQDLDEVEGIGEVRAKKIKKGLKR 348 >gi|167464420|ref|ZP_02329509.1| late competence protein (DNA binding and uptake) [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384960|ref|ZP_08058616.1| membrane bound high-affinity DNA-binding receptor-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150257|gb|EFX43764.1| membrane bound high-affinity DNA-binding receptor-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 177 Score = 40.9 bits (94), Expect = 0.61, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 10/63 (15%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKK-IACKI-YNH 606 A L E+ GIG + + +L GT + I L ++GI +K +A I Y Sbjct: 120 ATEQQLIELPGIGKSKAKAILAYRQQKGTFRSIR-----ELLEVKGIGEKMLAKLIPYMR 174 Query: 607 FHK 609 + Sbjct: 175 LNN 177 >gi|160915318|ref|ZP_02077531.1| hypothetical protein EUBDOL_01327 [Eubacterium dolichum DSM 3991] gi|158433117|gb|EDP11406.1| hypothetical protein EUBDOL_01327 [Eubacterium dolichum DSM 3991] Length = 155 Score = 40.9 bits (94), Expect = 0.61, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 13/54 (24%) Query: 556 PLDEINGIGPLRKRLLLQS-----FGTVKMISRSSPETLASIEGISKKIACKIY 604 LDE+ G+GP + ++ F T+ E L +++GI ++ KI Sbjct: 105 ELDELKGVGPSIAQRIIDYRNQQPFKTL--------EELKNVKGIGDRMFEKIK 150 >gi|317012687|gb|ADU83295.1| Holliday junction DNA helicase RuvA [Helicobacter pylori Lithuania75] Length = 183 Score = 40.9 bits (94), Expect = 0.62, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 7/58 (12%) Query: 551 KAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACKI 603 K + L +ING+G +L F ++ + L + GI KK+A KI Sbjct: 68 KILFERLLKINGVGGRIALAILSSFSPNEFESIIATKE--VKRLQQVPGIGKKLADKI 123 >gi|229186695|ref|ZP_04313854.1| DNA repair protein radC [Bacillus cereus BGSC 6E1] gi|228596798|gb|EEK54459.1| DNA repair protein radC [Bacillus cereus BGSC 6E1] Length = 225 Score = 40.9 bits (94), Expect = 0.62, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 19/38 (50%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +L F ++M+ ++ E L SI G+ A ++ F Sbjct: 50 KILHHFDGLRMLKDATLEELVSIHGVGIAKATQLIAAF 87 >gi|212703192|ref|ZP_03311320.1| hypothetical protein DESPIG_01234 [Desulfovibrio piger ATCC 29098] gi|212673458|gb|EEB33941.1| hypothetical protein DESPIG_01234 [Desulfovibrio piger ATCC 29098] Length = 729 Score = 40.9 bits (94), Expect = 0.62, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 S L I +G R+L F + ++ + + L + + ++A I + F Sbjct: 565 RLISAL-GIRHVGEQTARMLAAHFYDMDALAAADTQRLLELPDVGPEVASSIRSFF 619 >gi|183985054|ref|YP_001853345.1| putative RuvA-like protein [Mycobacterium marinum M] gi|183178380|gb|ACC43490.1| conserved hypothetical RuvA-like protein [Mycobacterium marinum M] Length = 358 Score = 40.9 bits (94), Expect = 0.62, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 22/44 (50%) Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 L+++FG+++ + +S L S+EGI A + + T Sbjct: 311 LVRAFGSLQGLLAASASDLQSVEGIGATWAPHVREGLSQLAEST 354 >gi|196044826|ref|ZP_03112060.1| DNA repair protein [Bacillus cereus 03BB108] gi|196024314|gb|EDX62987.1| DNA repair protein [Bacillus cereus 03BB108] Length = 192 Score = 40.9 bits (94), Expect = 0.62, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 19/38 (50%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +L F ++M+ ++ E L SI G+ A ++ F Sbjct: 50 KILHHFDGLRMLKDATLEELVSIHGVGIAKATQLIAAF 87 >gi|126465121|ref|YP_001040230.1| DEAD/DEAH box helicase domain-containing protein [Staphylothermus marinus F1] gi|126013944|gb|ABN69322.1| DEAD/DEAH box helicase domain protein [Staphylothermus marinus F1] Length = 716 Score = 40.9 bits (94), Expect = 0.62, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L E+ GIG +R R L++ ++K ++ + P + S+ G ++ +Y + Sbjct: 658 ELVELQGIGRVRARTLIKHGIKSLKDLASTPPSKIESLPGFGSRLVRSLYEQLRE 712 >gi|170727191|ref|YP_001761217.1| DNA ligase, NAD-dependent [Shewanella woodyi ATCC 51908] gi|254781418|sp|B1KJT5|DNLJ_SHEWM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|169812538|gb|ACA87122.1| DNA ligase, NAD-dependent [Shewanella woodyi ATCC 51908] Length = 670 Score = 40.9 bits (94), Expect = 0.62, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 3/61 (4%) Query: 550 KKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 K +S I +G L F T+ + + E+ ++ + +A + + Sbjct: 503 KTTTFSRFLYGLGIREVGEATAANLANYFKTLDKLKAADAESFIKVDDVGTIVAQHLTHF 562 Query: 607 F 607 F Sbjct: 563 F 563 >gi|321252528|ref|XP_003192437.1| exonuclease [Cryptococcus gattii WM276] gi|317458905|gb|ADV20650.1| Exonuclease, putative [Cryptococcus gattii WM276] Length = 1015 Score = 40.9 bits (94), Expect = 0.62, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 15/27 (55%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISR 583 LD I GIG L++ F +V+ + + Sbjct: 231 LDSIPGIGIKTAHRLMRRFNSVEKLLQ 257 >gi|289432483|ref|YP_003462356.1| DNA ligase, NAD-dependent [Dehalococcoides sp. GT] gi|288946203|gb|ADC73900.1| DNA ligase, NAD-dependent [Dehalococcoides sp. GT] Length = 680 Score = 40.9 bits (94), Expect = 0.62, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G LL + +G + ++++ L +I I KIA I +F + + Sbjct: 530 VGNETATLLSRHYGNIWALAKTGLGELQTIPDIGDKIASSIVAYFSEEKN 579 >gi|217032932|ref|ZP_03438407.1| hypothetical protein HPB128_147g5 [Helicobacter pylori B128] gi|298736165|ref|YP_003728691.1| Holliday junction ATP-dependent DNA helicase RuvA [Helicobacter pylori B8] gi|216945342|gb|EEC24014.1| hypothetical protein HPB128_147g5 [Helicobacter pylori B128] gi|298355355|emb|CBI66227.1| Holliday junction ATP-dependent DNA helicase ruvA [Helicobacter pylori B8] Length = 183 Score = 40.9 bits (94), Expect = 0.62, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 7/58 (12%) Query: 551 KAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACKI 603 K + L +ING+G +L F ++ + L + GI KK+A KI Sbjct: 68 KILFERLLKINGVGGRIALAILSSFSPNEFESIIATKE--VKKLQQVPGIGKKLADKI 123 >gi|206901500|ref|YP_002250825.1| ComEA protein [Dictyoglomus thermophilum H-6-12] gi|206740603|gb|ACI19661.1| ComEA protein [Dictyoglomus thermophilum H-6-12] Length = 184 Score = 40.9 bits (94), Expect = 0.62, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 15/27 (55%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S E L S+ GI +A +I + Sbjct: 125 NINTASKEELESLPGIGPTLAQRIIEY 151 Score = 39.7 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 14/60 (23%) Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 A+ L+ + GIGP + +++ F + E L +++GI +K KI + Sbjct: 129 ASKEELESLPGIGPTLAQRIIEYREENGVFTSA--------EDLLNVKGIGEKKLEKIKD 180 >gi|190895188|ref|YP_001985481.1| hypothetical protein RHECIAT_PC0000861 [Rhizobium etli CIAT 652] gi|190700849|gb|ACE94931.1| hypothetical protein RHECIAT_PC0000861 [Rhizobium etli CIAT 652] Length = 113 Score = 40.9 bits (94), Expect = 0.62, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 20/39 (51%) Query: 6 MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH 44 +P+ G Y + G VLYVG NL++ + ++ + Sbjct: 57 IPDSSGCYVLTSFDGNVLYVGLTKNLKRGMAQHLDNREK 95 >gi|91774671|ref|YP_544427.1| DNA repair protein RadC [Methylobacillus flagellatus KT] gi|122985645|sp|Q1H4K1|Y315_METFK RecName: Full=UPF0758 protein Mfla_0315 gi|91708658|gb|ABE48586.1| DNA replication and repair protein RadC [Methylobacillus flagellatus KT] Length = 224 Score = 40.9 bits (94), Expect = 0.62, Method: Composition-based stats. Identities = 8/28 (28%), Positives = 15/28 (53%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGIS 596 R LL+ F ++ I +S E + + G+ Sbjct: 48 RELLKRFSSLNGIFAASAEEICQVHGMG 75 >gi|73748436|ref|YP_307675.1| DNA ligase, NAD-dependent [Dehalococcoides sp. CBDB1] gi|123759761|sp|Q3ZX08|DNLJ_DEHSC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|73660152|emb|CAI82759.1| DNA ligase, NAD-dependent [Dehalococcoides sp. CBDB1] Length = 677 Score = 40.9 bits (94), Expect = 0.62, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G LL + +G + ++++ L +I I KIA I +F + + Sbjct: 527 VGNETATLLSRHYGNIWALAKTGLGELQTIPDIGDKIASSIVAYFSEEKN 576 >gi|313905039|ref|ZP_07838409.1| competence protein ComEA helix-hairpin-helix repeat protein [Eubacterium cellulosolvens 6] gi|313470109|gb|EFR65441.1| competence protein ComEA helix-hairpin-helix repeat protein [Eubacterium cellulosolvens 6] Length = 247 Score = 40.9 bits (94), Expect = 0.63, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 14/58 (24%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L + GIG R +++ F + E + +I GI +K KI ++ Sbjct: 196 ELQTLPGIGEARAEAIIRYREEHGRFSGI--------EEIQNISGIKQKAFEKIKDYI 245 >gi|291545736|emb|CBL18844.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Ruminococcus sp. SR1/5] Length = 225 Score = 40.9 bits (94), Expect = 0.63, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 1/56 (1%) Query: 559 EINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613 I IG +++ + F + I +S E ++ I+ I IA + +F + Sbjct: 70 GIANIGLANAKVICRHFDNDLDRIRHASLEEVSDIDTIGPVIAGNLVAYFRDEDND 125 >gi|241759788|ref|ZP_04757888.1| DNA ligase, NAD-dependent [Neisseria flavescens SK114] gi|241319796|gb|EER56192.1| DNA ligase, NAD-dependent [Neisseria flavescens SK114] Length = 859 Score = 40.9 bits (94), Expect = 0.63, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614 +G + L Q+FGT++ + + LA + I +A I + F + Sbjct: 628 VGERTAKTLAQAFGTLENVRHAPEPILACLPDIGTVVARSIAHFFAQKAQQA 679 >gi|229032231|ref|ZP_04188204.1| DNA polymerase I [Bacillus cereus AH1271] gi|228729011|gb|EEL80014.1| DNA polymerase I [Bacillus cereus AH1271] Length = 891 Score = 40.9 bits (94), Expect = 0.63, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 6/45 (13%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 + G+G LL FGTV+ + E + + G KK+ K+ Sbjct: 206 GVPGVGEKTAIKLLTQFGTVEEVY----ENIEQVSG--KKLKEKL 244 >gi|154687041|ref|YP_001422202.1| DNA polymerase I [Bacillus amyloliquefaciens FZB42] gi|154352892|gb|ABS74971.1| PolA [Bacillus amyloliquefaciens FZB42] Length = 879 Score = 40.9 bits (94), Expect = 0.63, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + G+G LL+ F +V+ + S + ++ KK+ K+ + Sbjct: 194 GVPGVGEKTAIKLLKQFHSVEKLLD-SIDEVS-----GKKLKEKLEEY 235 >gi|147669216|ref|YP_001214034.1| DNA ligase, NAD-dependent [Dehalococcoides sp. BAV1] gi|190359250|sp|A5FRL4|DNLJ_DEHSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|146270164|gb|ABQ17156.1| DNA ligase, NAD-dependent [Dehalococcoides sp. BAV1] Length = 680 Score = 40.9 bits (94), Expect = 0.63, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 24/50 (48%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G LL + +G + ++++ L +I I KIA I +F + + Sbjct: 530 VGNETATLLSRHYGNIWALAKTGLGELQTIPDIGDKIASSIVAYFSEEKN 579 >gi|325267123|ref|ZP_08133791.1| crossover junction ATP-dependent DNA helicase RuvA [Kingella denitrificans ATCC 33394] gi|324981361|gb|EGC17005.1| crossover junction ATP-dependent DNA helicase RuvA [Kingella denitrificans ATCC 33394] Length = 194 Score = 40.9 bits (94), Expect = 0.63, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIACK 602 +A + L +++GIG +L + + + +++ + L+S+ GI KK A + Sbjct: 69 RATFRQLIKVSGIGAKTALGILSALSSDELAQAVAQEDVKRLSSVPGIGKKTAER 123 >gi|270263452|ref|ZP_06191721.1| DNA polymerase IV [Serratia odorifera 4Rx13] gi|270042336|gb|EFA15431.1| DNA polymerase IV [Serratia odorifera 4Rx13] Length = 353 Score = 40.9 bits (94), Expect = 0.63, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 29/80 (36%) Query: 556 PLDEINGIGPLRKRL-------------------LLQSFGTVKMI----------SRSSP 586 PL +I G+G + + LL+ FG + SP Sbjct: 177 PLSKIPGVGKVTAKRLEEVGLITCADVQQYDLALLLKRFGKFGRVLWERCQGIDLREVSP 236 Query: 587 ETLASIEGISKKIACKIYNH 606 E L G+ + +A I++ Sbjct: 237 ERLRKSVGVERTLAEDIHDW 256 >gi|257068898|ref|YP_003155153.1| competence protein ComEA-like protein with helix-hairpin-helix repeat region [Brachybacterium faecium DSM 4810] gi|256559716|gb|ACU85563.1| competence protein ComEA-like protein with helix-hairpin-helix repeat region [Brachybacterium faecium DSM 4810] Length = 279 Score = 40.9 bits (94), Expect = 0.63, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 14/54 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKI 603 L+E+ G+GP + +L+ F +V L + GI KI Sbjct: 228 ELEELPGVGPAIAQRILEHREKNGAFTSVDG--------LLEVSGIGPATLEKI 273 >gi|161485980|ref|NP_737948.2| NAD-dependent DNA ligase LigA [Corynebacterium efficiens YS-314] gi|259506289|ref|ZP_05749191.1| DNA ligase [Corynebacterium efficiens YS-314] gi|259166069|gb|EEW50623.1| DNA ligase [Corynebacterium efficiens YS-314] Length = 678 Score = 40.9 bits (94), Expect = 0.63, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L + +++ + + + LA +G+ IA + F Sbjct: 523 SIRHVGPTAARALAGRYRSMQKLVDAPVDELAETDGVGMIIAQSFKDWF 571 >gi|160881055|ref|YP_001560023.1| DNA ligase, NAD-dependent [Clostridium phytofermentans ISDg] gi|190359247|sp|A9KPL0|DNLJ_CLOPH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|160429721|gb|ABX43284.1| DNA ligase, NAD-dependent [Clostridium phytofermentans ISDg] Length = 653 Score = 40.9 bits (94), Expect = 0.63, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKIYNHFH 608 K YS I +G +L+ + FG +S ++ + L I I IA ++F Sbjct: 490 AKFIYS--LGIANVGLANAKLICKEFGYDFNKVSNATVDELTQIPQIGYVIAEAFVSYFQ 547 Query: 609 KNTS 612 K + Sbjct: 548 KPEN 551 >gi|81749525|sp|Q8FPZ7|DNLJ_COREF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|23493177|dbj|BAC18148.1| putative DNA ligase [Corynebacterium efficiens YS-314] Length = 938 Score = 40.9 bits (94), Expect = 0.63, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +GP R L + +++ + + + LA +G+ IA + F Sbjct: 783 SIRHVGPTAARALAGRYRSMQKLVDAPVDELAETDGVGMIIAQSFKDWF 831 >gi|317126214|ref|YP_004100326.1| excinuclease ABC subunit C [Intrasporangium calvum DSM 43043] gi|315590302|gb|ADU49599.1| Excinuclease ABC C subunit domain protein [Intrasporangium calvum DSM 43043] Length = 273 Score = 40.9 bits (94), Expect = 0.64, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 4/38 (10%) Query: 5 QMPEC----PGVYQMLDIAGRVLYVGKAYNLQKRIKSY 38 ++PE PGVY ++D LYVG++ +L+ RI + Sbjct: 40 RLPESEWTVPGVYVLIDDTLHRLYVGRSTDLRTRILQH 77 >gi|271967135|ref|YP_003341331.1| DNA polymerase I [Streptosporangium roseum DSM 43021] gi|270510310|gb|ACZ88588.1| DNA polymerase I [Streptosporangium roseum DSM 43021] Length = 306 Score = 40.9 bits (94), Expect = 0.64, Method: Composition-based stats. Identities = 7/32 (21%), Positives = 16/32 (50%), Gaps = 1/32 (3%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 L + G+G L+ FG+++ + R+ + Sbjct: 199 LPGVPGVGDKTAAALITRFGSLEALLRA-VDE 229 >gi|160914436|ref|ZP_02076651.1| hypothetical protein EUBDOL_00440 [Eubacterium dolichum DSM 3991] gi|158433594|gb|EDP11883.1| hypothetical protein EUBDOL_00440 [Eubacterium dolichum DSM 3991] Length = 664 Score = 40.9 bits (94), Expect = 0.64, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 22/47 (46%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 +G R+L +++G + + + L +I+ I A I +F + Sbjct: 512 VGKKAARVLAKTYGNIDDLMAAEEAELTAIKDIGVVTAQSIRAYFAE 558 >gi|331673596|ref|ZP_08374359.1| putative chaperonin [Escherichia coli TA280] gi|331068869|gb|EGI40261.1| putative chaperonin [Escherichia coli TA280] Length = 648 Score = 40.9 bits (94), Expect = 0.64, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 46/137 (33%), Gaps = 42/137 (30%) Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556 IAK ++ E RD + L+D A R++ Sbjct: 473 IAKRTMLEKMKDEILGLPEEE----KRD-----LAALQDTA-----------RERQKQKF 512 Query: 557 LD-------EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH- 606 L+ I G+GP RK L +SFG T ++R S ++G + + + Sbjct: 513 LEGFFIDVASIPGVGPARKAAL-RSFGIETAADVTRRSV---KQVKGFGDHLTQAVIDWK 568 Query: 607 --------FHKNTSHTP 615 F N + TP Sbjct: 569 ASCERRFVFRPNEAVTP 585 >gi|323187786|gb|EFZ73084.1| hypothetical protein ECRN5871_3973 [Escherichia coli RN587/1] Length = 646 Score = 40.9 bits (94), Expect = 0.64, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 46/137 (33%), Gaps = 42/137 (30%) Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556 IAK ++ E RD + L+D A R++ Sbjct: 471 IAKRTMLEKMKDEILGLPEEE----KRD-----LAALQDTA-----------RERQKQKF 510 Query: 557 LD-------EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH- 606 L+ I G+GP RK L +SFG T ++R S ++G + + + Sbjct: 511 LEGFFIDVASIPGVGPARKAAL-RSFGIETAADVTRRSV---KQVKGFGDHLTQAVIDWK 566 Query: 607 --------FHKNTSHTP 615 F N + TP Sbjct: 567 ASCERRFVFRPNEAVTP 583 >gi|319406256|emb|CBI79893.1| holliday junction DNA helicase RuvA [Bartonella sp. AR 15-3] Length = 214 Score = 40.9 bits (94), Expect = 0.64, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 27/118 (22%) Query: 509 KFFVKKGEALVLNMRDPILYFI--QRLRDEAHR---FAITTHRKRRKKAAYSP------L 557 F+ L L +R+EA R FA S L Sbjct: 27 IIFIPNRLHSSLPAIGESLSLFIETHVREEAIRLFGFA-----------TKSEQEWFCLL 75 Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRS-SPET---LASIEGISKKIACKIYNHFHKNT 611 + G+G +L S +V +S++ + ++ G+ KK++ +I + T Sbjct: 76 QNVPGVGAKVALAILGSL-SVSELSQAITLNDTAMISRAPGVGKKVSERIVSELKSKT 132 >gi|303241827|ref|ZP_07328322.1| competence protein ComEA helix-hairpin-helix repeat protein [Acetivibrio cellulolyticus CD2] gi|302590602|gb|EFL60355.1| competence protein ComEA helix-hairpin-helix repeat protein [Acetivibrio cellulolyticus CD2] Length = 256 Score = 40.9 bits (94), Expect = 0.64, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 10/60 (16%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYNHF 607 A + LD + G+GP ++ F G K I E + ++ GI + + + Sbjct: 200 ATEAELDTLPGVGPSTASKIVS-FREKSGNFKKI-----EDIMNVPGIGESKFENMKDFI 253 >gi|284922064|emb|CBG35143.1| conserved hypothetical protein [Escherichia coli 042] Length = 648 Score = 40.9 bits (94), Expect = 0.64, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 46/137 (33%), Gaps = 42/137 (30%) Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556 IAK ++ E RD + L+D A R++ Sbjct: 473 IAKRTMLEKMKDEILGLPEEE----KRD-----LAALQDTA-----------RERQKQKF 512 Query: 557 LD-------EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH- 606 L+ I G+GP RK L +SFG T ++R S ++G + + + Sbjct: 513 LEGFFIDVASIPGVGPARKAAL-RSFGIETAADVTRRSV---KQVKGFGDHLTQAVIDWK 568 Query: 607 --------FHKNTSHTP 615 F N + TP Sbjct: 569 ASCERRFVFRPNEAVTP 585 >gi|212691962|ref|ZP_03300090.1| hypothetical protein BACDOR_01457 [Bacteroides dorei DSM 17855] gi|212665354|gb|EEB25926.1| hypothetical protein BACDOR_01457 [Bacteroides dorei DSM 17855] Length = 168 Score = 40.9 bits (94), Expect = 0.64, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 20/100 (20%) Query: 5 QMPECPGVYQ---MLDI------AGRVLYVGKAYNLQKRIKSY-----------MHSNNH 44 +P PGVY +V+Y+GK N+Q+R+K + + H Sbjct: 52 DLPSKPGVYIIVSFKTKFIYPIGQSKVIYIGKTDNIQRRLKEHQRNLINAINDRFNECWH 111 Query: 45 THRITHMISQINNIRFTVTCTEVEALLLEANMIKRLKPRF 84 R +M + + E+ LE+++I+ R+ Sbjct: 112 LDRYNYMRYHGAKVYYYTCRGYQESKDLESSIIESFYDRY 151 >gi|170681285|ref|YP_001743069.1| hypothetical protein EcSMS35_0990 [Escherichia coli SMS-3-5] gi|170519003|gb|ACB17181.1| conserved hypothetical protein [Escherichia coli SMS-3-5] Length = 648 Score = 40.9 bits (94), Expect = 0.64, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 46/137 (33%), Gaps = 42/137 (30%) Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556 IAK ++ E RD + L+D A R++ Sbjct: 473 IAKRTMLEKMKDEILGLPEEE----KRD-----LAALQDTA-----------RERQKQKF 512 Query: 557 LD-------EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH- 606 L+ I G+GP RK L +SFG T ++R S ++G + + + Sbjct: 513 LEGFFIDVASIPGVGPARKAAL-RSFGIETAADVTRRSV---KQVKGFGDHLTQAVIDWK 568 Query: 607 --------FHKNTSHTP 615 F N + TP Sbjct: 569 ASCERRFVFRPNEAVTP 585 >gi|149928191|ref|ZP_01916436.1| DNA ligase (NAD+) [Limnobacter sp. MED105] gi|149823082|gb|EDM82322.1| DNA ligase (NAD+) [Limnobacter sp. MED105] Length = 597 Score = 40.9 bits (94), Expect = 0.64, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 17/59 (28%) Query: 551 KAAYSPLDEIN--------------GI---GPLRKRLLLQSFGTVKMISRSSPETLASI 592 K+A + LD I+ GI G R L F V+ + +S E L + Sbjct: 513 KSARNLLDSIDKAKQTTFGRFLFGLGIRHVGEATARDLAAYFKNVERLMNASEEELLEV 571 >gi|71909499|ref|YP_287086.1| competence protein ComEA helix-hairpin-helix region [Dechloromonas aromatica RCB] gi|71849120|gb|AAZ48616.1| Competence protein ComEA helix-hairpin-helix region [Dechloromonas aromatica RCB] Length = 105 Score = 40.9 bits (94), Expect = 0.64, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 8/59 (13%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607 A LD + GIGP + + ++ G+ K S + L ++G +K K+ + Sbjct: 39 ATVDELDGVKGIGPSKAKAIVDYRTKNGSFK-----SVDDLKGVKGFGEKSIAKLRSEL 92 >gi|82617156|emb|CAI64063.1| DNA repair and recombination protein [uncultured archaeon] gi|82617268|emb|CAI64174.1| DNA repair and recombination protein [uncultured archaeon] gi|268323001|emb|CBH36589.1| DNA repair and recombination protein radA [uncultured archaeon] Length = 315 Score = 40.9 bits (94), Expect = 0.64, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Query: 558 DEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605 +E+ G+GP L ++ + +++ I+ +SP L + I + + KI N Sbjct: 4 EELPGVGPAIAEKLREAGYNSLEAIAVASPAELVAAAEIGEATSAKIIN 52 >gi|54296979|ref|YP_123348.1| DNA ligase [Legionella pneumophila str. Paris] gi|81370862|sp|Q5X6E6|DNLJ_LEGPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|53750764|emb|CAH12171.1| DNA ligase [Legionella pneumophila str. Paris] Length = 673 Score = 40.9 bits (94), Expect = 0.64, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 14/74 (18%) Query: 548 RRKKAAYSPLDE--------------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593 + K S L++ I IG R+L + + V+ + ++ E L ++ Sbjct: 494 KSAKNLLSALEKSKKTTFNRFLYALGIREIGEAGARVLAEHYCDVESLKSATIEELMTLN 553 Query: 594 GISKKIACKIYNHF 607 I A + + F Sbjct: 554 DIGPVAASHVVHFF 567 >gi|307245098|ref|ZP_07527191.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254053|ref|ZP_07535900.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258509|ref|ZP_07540246.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853987|gb|EFM86199.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862978|gb|EFM94925.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867413|gb|EFM99264.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 201 Score = 40.9 bits (94), Expect = 0.65, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 13/83 (15%) Query: 533 LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-SPET 588 +R++AH FA +++ + + L + NG+GP +L + +V + + E Sbjct: 53 VREDAHLLFGFA-----QKQDRTLFRELIKTNGVGPKLALAILSAM-SVSQFANAVEHEE 106 Query: 589 LAS---IEGISKKIACKIYNHFH 608 LA I GI +K A ++ Sbjct: 107 LAKLTKIPGIGRKTAERLLVELK 129 >gi|259507870|ref|ZP_05750770.1| DNA uptake protein [Corynebacterium efficiens YS-314] gi|259164663|gb|EEW49217.1| DNA uptake protein [Corynebacterium efficiens YS-314] Length = 237 Score = 40.9 bits (94), Expect = 0.65, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 12/57 (21%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS-----PETLASIEGISKKIACKI 603 A + L + G+G + ++Q ++ + L ++GI +I Sbjct: 182 ATAAELQTLPGVGEKTAQAIIQH-------REANGGFSAVDDLLEVKGIGPSKFAQI 231 >gi|227509971|ref|ZP_03940020.1| NAD-dependent DNA ligase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190577|gb|EEI70644.1| NAD-dependent DNA ligase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 675 Score = 40.9 bits (94), Expect = 0.65, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G RL+ Q F + + ++ + +A I+ + IA + +F Sbjct: 516 GIRHVGAKAARLIAQRFKNIDKVMDATAQEIAEIDTMGMIIADSVVTYF 564 >gi|25028805|ref|NP_738859.1| hypothetical protein CE2249 [Corynebacterium efficiens YS-314] gi|23494091|dbj|BAC19059.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 255 Score = 40.9 bits (94), Expect = 0.65, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 12/57 (21%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS-----PETLASIEGISKKIACKI 603 A + L + G+G + ++Q ++ + L ++GI +I Sbjct: 200 ATAAELQTLPGVGEKTAQAIIQH-------REANGGFSAVDDLLEVKGIGPSKFAQI 249 >gi|157690871|ref|YP_001485333.1| DNA integrity scanning protein DisA [Bacillus pumilus SAFR-032] gi|167016888|sp|A8F956|DISA_BACP2 RecName: Full=DNA integrity scanning protein disA gi|157679629|gb|ABV60773.1| DNA integrity scanning protein [Bacillus pumilus SAFR-032] Length = 359 Score = 40.9 bits (94), Expect = 0.66, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 16/35 (45%) Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 FG + I + + L +EGI + A KI + Sbjct: 314 FGVLDRIMEADVQDLDEVEGIGEVRAKKIKKGLKR 348 >gi|254414029|ref|ZP_05027797.1| helicase, RecD/TraA family [Microcoleus chthonoplastes PCC 7420] gi|196179165|gb|EDX74161.1| helicase, RecD/TraA family [Microcoleus chthonoplastes PCC 7420] Length = 742 Score = 40.9 bits (94), Expect = 0.66, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603 K S L I G+GP+ ++ FG T+++I E L ++GI+KK I Sbjct: 97 KYLGSGL--IKGVGPVTASRIVAHFGLDTLEVIEN-QIERLVEVKGIAKKRIRMI 148 >gi|326791207|ref|YP_004309028.1| competence protein ComEA helix-hairpin-helix repeat protein [Clostridium lentocellum DSM 5427] gi|326541971|gb|ADZ83830.1| competence protein ComEA helix-hairpin-helix repeat protein [Clostridium lentocellum DSM 5427] Length = 235 Score = 40.9 bits (94), Expect = 0.67, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 2/45 (4%) Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 + L + GIG ++ ++ TV+ S + L + GI K Sbjct: 183 TELMSLPGIGEVKANAIIDYRKTVRAFG--SIDDLKEVSGIGDKT 225 >gi|255994367|ref|ZP_05427502.1| competence protein CelA [Eubacterium saphenum ATCC 49989] gi|255993080|gb|EEU03169.1| competence protein CelA [Eubacterium saphenum ATCC 49989] Length = 211 Score = 40.9 bits (94), Expect = 0.67, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 8/59 (13%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607 A + L +NGIGP ++ G K + E L + GI K K+ F Sbjct: 156 ADATKLQTVNGIGPATAEKIIDYRENNGNFKKV-----EDLVKVPGIGPKTVQKLIKEF 209 >gi|153207802|ref|ZP_01946402.1| competence protein ComEA, helix-hairpin-helix repeat region [Coxiella burnetii 'MSU Goat Q177'] gi|161830444|ref|YP_001596464.1| helix-hairpin-helix repeat-containing competence protein ComEA [Coxiella burnetii RSA 331] gi|165923887|ref|ZP_02219719.1| competence protein ComEA, helix-hairpin-helix repeat region [Coxiella burnetii RSA 334] gi|120576354|gb|EAX32978.1| competence protein ComEA, helix-hairpin-helix repeat region [Coxiella burnetii 'MSU Goat Q177'] gi|161762311|gb|ABX77953.1| competence protein ComEA, helix-hairpin-helix repeat region [Coxiella burnetii RSA 331] gi|165916672|gb|EDR35276.1| competence protein ComEA, helix-hairpin-helix repeat region [Coxiella burnetii RSA 334] Length = 113 Score = 40.9 bits (94), Expect = 0.67, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 15/60 (25%) Query: 557 LDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKK-IACKIYNHFHK 609 L + GIG + + ++ F +++ L+S+ GIS+K +A I N+ H+ Sbjct: 57 LTTLKGIGVKKAKAIIAYRKKEGNFKSIEA--------LSSVPGISQKTVARLIRNNPHR 108 >gi|47566644|ref|ZP_00237466.1| DNA repair protein RadC [Bacillus cereus G9241] gi|228987706|ref|ZP_04147817.1| DNA repair protein radC [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|47556674|gb|EAL15006.1| DNA repair protein RadC [Bacillus cereus G9241] gi|228771980|gb|EEM20435.1| DNA repair protein radC [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 225 Score = 40.9 bits (94), Expect = 0.67, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 19/38 (50%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +L F ++M+ ++ E L SI G+ A ++ F Sbjct: 50 KILHHFDGLRMLKDATLEELVSIHGVGIAKATQLIAAF 87 >gi|255024355|ref|ZP_05296341.1| UvrABC system protein C (Protein UvrC) (Excinuclease ABC subunit C) [Listeria monocytogenes FSL J1-208] Length = 163 Score = 40.9 bits (94), Expect = 0.67, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 56/160 (35%), Gaps = 10/160 (6%) Query: 204 RNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRMDCFSLYHNKNLACIQTCF 260 +M AT ++E A RD++ A++ I+ D Y N + F Sbjct: 1 EDMLTATENLEFERAAELRDKIHAINETIEKQHIIFPGLKNRDIIGCYEQDNHLSVFVFF 60 Query: 261 FHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFF 320 G G+ + + P+ +L++E+ ++ L E Sbjct: 61 VRNGAINGSKWHVFPIEKNLQEDLAKFLNQFYEDPNNIQPKELLIAEKIDKNLLNESL-- 118 Query: 321 KQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 + P++G K+K IE A+ NA ++ + Sbjct: 119 -----RKACLFPQKGGKKKQIELAIENAKSAYIAYAKMKE 153 >gi|209527955|ref|ZP_03276440.1| DNA ligase, NAD-dependent [Arthrospira maxima CS-328] gi|209491614|gb|EDZ91984.1| DNA ligase, NAD-dependent [Arthrospira maxima CS-328] Length = 680 Score = 40.9 bits (94), Expect = 0.67, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 25/50 (50%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G + LL Q+F + + ++ +S + + GI +IA +Y F + Sbjct: 528 VGEVNAELLAQNFPSCQSLAAASSAQIEGVYGIGAEIATSVYQWFQNPAN 577 >gi|189426316|ref|YP_001953493.1| DNA protecting protein DprA [Geobacter lovleyi SZ] gi|189422575|gb|ACD96973.1| DNA protecting protein DprA [Geobacter lovleyi SZ] Length = 364 Score = 40.9 bits (94), Expect = 0.67, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 28/48 (58%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 L + GIGP+ R LL+ F T + ++P LA++ G++ +IA I Sbjct: 8 ALRAVEGIGPVLFRRLLERFETPGHVFSAAPGALATVRGVTPQIAEAI 55 >gi|20088979|ref|NP_615054.1| hypothetical protein MA0080 [Methanosarcina acetivorans C2A] gi|19913829|gb|AAM03534.1| conserved hypothetical protein [Methanosarcina acetivorans C2A] Length = 707 Score = 40.9 bits (94), Expect = 0.67, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%) Query: 555 SPLDEINGIGPLRKRLLLQSFGT----VKMISRSSPETLASIEGISKKIACKIYNHFH 608 S L E+NGIG L++ FG+ ++ I +L+ + G+S A + F Sbjct: 8 SGLQELNGIGERVACRLVEHFGSEEAALQAILEGDIASLSEVNGVSHTFALSLARDFR 65 >gi|298370450|ref|ZP_06981766.1| holliday junction DNA helicase RuvA [Neisseria sp. oral taxon 014 str. F0314] gi|298281910|gb|EFI23399.1| holliday junction DNA helicase RuvA [Neisseria sp. oral taxon 014 str. F0314] Length = 193 Score = 40.9 bits (94), Expect = 0.68, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 15/94 (15%) Query: 518 LVLNMRDPILYFIQRL--RDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLL 572 L + +L R++AH FA ++A + L +++GIG +L Sbjct: 36 YRLPATGEAVQLYTQLVVREDAHLLFGFA-----TADERATFRQLVKVSGIGAKTALGIL 90 Query: 573 QSFGTVKMISRSSPET----LASIEGISKKIACK 602 + + ++++ E L+S GI KK A + Sbjct: 91 SAM-SADELAQAVAEEDVKRLSSAPGIGKKTAER 123 >gi|237736936|ref|ZP_04567417.1| DNA repair protein radC [Fusobacterium mortiferum ATCC 9817] gi|229420798|gb|EEO35845.1| DNA repair protein radC [Fusobacterium mortiferum ATCC 9817] Length = 225 Score = 40.9 bits (94), Expect = 0.68, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 19/32 (59%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 + L++ FG + + +S + L S++GI + A Sbjct: 48 KELIEKFGNLDGVVMASIDELMSVKGIKQNSA 79 >gi|332665102|ref|YP_004447890.1| DNA polymerase I [Haliscomenobacter hydrossis DSM 1100] gi|332333916|gb|AEE51017.1| DNA polymerase I [Haliscomenobacter hydrossis DSM 1100] Length = 935 Score = 40.9 bits (94), Expect = 0.68, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 I G+G LL F T++ + ++ L Sbjct: 196 GIPGVGEKTAAKLLDRFDTIEGVI-ANVNELK 226 >gi|332654169|ref|ZP_08419913.1| helicase, RecD/TraA family [Ruminococcaceae bacterium D16] gi|332517255|gb|EGJ46860.1| helicase, RecD/TraA family [Ruminococcaceae bacterium D16] Length = 734 Score = 40.9 bits (94), Expect = 0.68, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 + G+G RLL++ FG + +I P+ L I GIS K A I N F + Sbjct: 95 VKGVGKATARLLVEEFGEEALNVIEE-EPDKLTRIRGISPKRARTISNAFRQ 145 >gi|239908279|ref|YP_002955020.1| helicase RecD/TraA family protein [Desulfovibrio magneticus RS-1] gi|239798145|dbj|BAH77134.1| helicase RecD/TraA family protein [Desulfovibrio magneticus RS-1] Length = 723 Score = 40.9 bits (94), Expect = 0.68, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKK 598 K S L I GIGP+ R +++ FG T+ +I + + L + GI K Sbjct: 85 KYLGSGL--IKGIGPVMARRIVKLFGEATLDVI-EADIQKLVEVPGIGSK 131 >gi|224476698|ref|YP_002634304.1| hypothetical protein Sca_1212 [Staphylococcus carnosus subsp. carnosus TM300] gi|222421305|emb|CAL28119.1| hypothetical protein, similar to late competence operon protein ComEA [Staphylococcus carnosus subsp. carnosus TM300] Length = 222 Score = 40.9 bits (94), Expect = 0.68, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 8/59 (13%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607 A S L I G+GP + + +++ G+ I E L I+G K K+ ++ Sbjct: 167 AKESELTSITGLGPTKAKAIIEYRENKGSFNKI-----EQLKEIKGFGDKTYEKLKDYL 220 >gi|311069260|ref|YP_003974183.1| Holliday junction DNA helicase RuvA [Bacillus atrophaeus 1942] gi|310869777|gb|ADP33252.1| Holliday junction DNA helicase RuvA [Bacillus atrophaeus 1942] Length = 201 Score = 40.9 bits (94), Expect = 0.69, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 7/76 (9%) Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET--- 588 +R++A F++ R +KA ++ L + GIGP +L S G + + + Sbjct: 49 HIREDA--FSLYGFSTREEKALFTKLLNVTGIGPKGALAILAS-GDPGAVIEAIEQEDEA 105 Query: 589 -LASIEGISKKIACKI 603 L G+ KK A +I Sbjct: 106 FLVKFPGVGKKTARQI 121 >gi|293189679|ref|ZP_06608396.1| putative comEA protein [Actinomyces odontolyticus F0309] gi|292821417|gb|EFF80359.1| putative comEA protein [Actinomyces odontolyticus F0309] Length = 232 Score = 40.9 bits (94), Expect = 0.69, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 14/58 (24%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS------PETLASIEGISKKIACKI 603 A + L + GIGP + ++ R++ E L + GI + KI Sbjct: 177 ATEAELQTLPGIGPALAQRIISY--------RATHPRLSTVEELDDVPGIGPSLIEKI 226 >gi|226324463|ref|ZP_03799981.1| hypothetical protein COPCOM_02244 [Coprococcus comes ATCC 27758] gi|225206911|gb|EEG89265.1| hypothetical protein COPCOM_02244 [Coprococcus comes ATCC 27758] Length = 200 Score = 40.9 bits (94), Expect = 0.69, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 8/57 (14%) Query: 552 AAYSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYN 605 A + L ++GIG R ++ G + I E L ++GI + I KI Sbjct: 144 ATKAELLSLSGIGESRAEAIIAYRETNGGFRKI-----EDLKKVDGIKEGIFQKIRE 195 >gi|239623226|ref|ZP_04666257.1| helicase [Clostridiales bacterium 1_7_47_FAA] gi|239522192|gb|EEQ62058.1| helicase [Clostridiales bacterium 1_7_47FAA] Length = 785 Score = 40.9 bits (94), Expect = 0.69, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603 I GIG +++ F T + PE L+ ++GIS+K+A I Sbjct: 90 IKGIGAALAARIVRHFKADTF-RVMEEEPERLSEVKGISEKMAMAI 134 >gi|71908755|ref|YP_286342.1| DNA repair protein RadC [Dechloromonas aromatica RCB] gi|123626759|sp|Q47BA9|Y3142_DECAR RecName: Full=UPF0758 protein Daro_3142 gi|71848376|gb|AAZ47872.1| DNA replication and repair protein RadC [Dechloromonas aromatica RCB] Length = 226 Score = 40.9 bits (94), Expect = 0.69, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Query: 569 RLLLQSF-GTVKMISRSSPETLASIEGISKKIACKIYNHF 607 R LL F G + ++ +S E LAS+ GI A ++ F Sbjct: 48 RDLLHRFDGRLGTLAEASLEELASVSGIGMAKAAQLKASF 87 >gi|125975668|ref|YP_001039578.1| RecD/TraA family helicase [Clostridium thermocellum ATCC 27405] gi|125715893|gb|ABN54385.1| helicase, RecD/TraA family [Clostridium thermocellum ATCC 27405] Length = 710 Score = 40.9 bits (94), Expect = 0.69, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFH 608 K S L I GIGP+ + +++ F T+++I P+ L + GI KK I + Sbjct: 80 KYLGSGL--IKGIGPVNAKRIVKVFKEDTIRVIEE-EPDRLIEVPGIGKKRVEMIKEAWQ 136 Query: 609 K 609 Sbjct: 137 N 137 >gi|325968460|ref|YP_004244652.1| flap structure-specific endonuclease [Vulcanisaeta moutnovskia 768-28] gi|323707663|gb|ADY01150.1| flap structure-specific endonuclease [Vulcanisaeta moutnovskia 768-28] Length = 349 Score = 40.9 bits (94), Expect = 0.69, Method: Composition-based stats. Identities = 10/26 (38%), Positives = 17/26 (65%) Query: 558 DEINGIGPLRKRLLLQSFGTVKMISR 583 D + GIGP R L+Q FG+++ + + Sbjct: 245 DGVPGIGPQRALKLIQEFGSLEKLLQ 270 >gi|302391343|ref|YP_003827163.1| DNA replication and repair protein RadC [Acetohalobium arabaticum DSM 5501] gi|302203420|gb|ADL12098.1| DNA replication and repair protein RadC [Acetohalobium arabaticum DSM 5501] Length = 229 Score = 40.9 bits (94), Expect = 0.69, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 16/34 (47%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 LL G +K I S E L ++G+ A +I Sbjct: 53 KLLTHTGGLKFIGDLSVEELQEVKGVGLAKAAQI 86 >gi|284928856|ref|YP_003421378.1| putative endonuclease [cyanobacterium UCYN-A] gi|284809315|gb|ADB95020.1| putative endonuclease [cyanobacterium UCYN-A] Length = 212 Score = 40.9 bits (94), Expect = 0.69, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 8/65 (12%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64 +PE G+Y M +G V Y+G + NL++ + SY S+ H + I+ I + + Sbjct: 23 HLPEKTGIYMMASSSGYVYYIGNSINLRQYLLSYNLSDLHKY-------DIHKIYYLLCN 75 Query: 65 -TEVE 68 TE+E Sbjct: 76 QTELE 80 >gi|254166886|ref|ZP_04873740.1| XPG I-region domain protein [Aciduliprofundum boonei T469] gi|289596167|ref|YP_003482863.1| flap structure-specific endonuclease [Aciduliprofundum boonei T469] gi|197624496|gb|EDY37057.1| XPG I-region domain protein [Aciduliprofundum boonei T469] gi|289533954|gb|ADD08301.1| flap structure-specific endonuclease [Aciduliprofundum boonei T469] Length = 339 Score = 40.9 bits (94), Expect = 0.69, Method: Composition-based stats. Identities = 7/24 (29%), Positives = 15/24 (62%) Query: 558 DEINGIGPLRKRLLLQSFGTVKMI 581 + I G+GP L++ +G+++ I Sbjct: 239 EGIKGVGPKTALKLIKKYGSLEKI 262 >gi|148654262|ref|YP_001274467.1| phosphotransferase domain-containing protein [Roseiflexus sp. RS-1] gi|148566372|gb|ABQ88517.1| PHP C-terminal domain protein [Roseiflexus sp. RS-1] Length = 580 Score = 40.9 bits (94), Expect = 0.69, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Query: 556 PLDEINGIGPLRKRLLLQSFG--TVKMISRSSPE-TLASIEGISKKIACKIYN 605 L + G+GP L + G ++ + R++ E LA+++G K+ I Sbjct: 96 ELLRVPGVGPRTAGRLYRELGITSLAELKRAAEEGRLATLKGFGAKMIEGILQ 148 >gi|42521112|ref|NP_967027.1| transcription elongation factor NusA [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410853|gb|AAS14961.1| N utilization substance protein A [Wolbachia endosymbiont of Drosophila melanogaster] Length = 520 Score = 40.9 bits (94), Expect = 0.69, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 7/54 (12%) Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L+EI G +LL+ F +V+ IS +S + LASIEG ++ IA +++N +K Sbjct: 387 LEEIMG------QLLVTEGFSSVEDISSASIKELASIEGFNEDIANELHNRANK 434 >gi|37521330|ref|NP_924707.1| hypothetical protein gll1761 [Gloeobacter violaceus PCC 7421] gi|35212327|dbj|BAC89702.1| gll1761 [Gloeobacter violaceus PCC 7421] Length = 360 Score = 40.9 bits (94), Expect = 0.69, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 20/34 (58%) Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594 G+GPL R L + FG+++ ++ +++EG Sbjct: 15 PGVGPLTIRRLREHFGSLQAAWEAAETEFSAVEG 48 >gi|58696914|ref|ZP_00372417.1| N utilization substance protein A [Wolbachia endosymbiont of Drosophila simulans] gi|58698399|ref|ZP_00373311.1| N utilization substance protein A, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|225631019|ref|YP_002727810.1| transcription elongation factor NusA [Wolbachia sp. wRi] gi|13569584|gb|AAK31158.1|AF348330_4 N utilization substance protein A [Wolbachia sp. wRi] gi|58535081|gb|EAL59168.1| N utilization substance protein A, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58536861|gb|EAL60065.1| N utilization substance protein A [Wolbachia endosymbiont of Drosophila simulans] gi|225593000|gb|ACN96019.1| transcription elongation factor NusA [Wolbachia sp. wRi] Length = 520 Score = 40.9 bits (94), Expect = 0.69, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 7/54 (12%) Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L+EI G +LL+ F +V+ IS +S + LASIEG ++ IA +++N +K Sbjct: 387 LEEIMG------QLLVTEGFSSVEDISSASIKELASIEGFNEDIANELHNRANK 434 >gi|300936623|ref|ZP_07151527.1| conserved hypothetical protein [Escherichia coli MS 21-1] gi|300458204|gb|EFK21697.1| conserved hypothetical protein [Escherichia coli MS 21-1] Length = 646 Score = 40.9 bits (94), Expect = 0.70, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 46/137 (33%), Gaps = 42/137 (30%) Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556 IAK ++ E RD + L+D A R++ Sbjct: 471 IAKRMMLEKMKDEILGLPEEE----KRD-----LAALQDTA-----------RERQKQKF 510 Query: 557 LD-------EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH- 606 L+ I G+GP RK L +SFG T ++R S ++G + + + Sbjct: 511 LEGFFIDVASIPGVGPARKAAL-RSFGIETAADVTRRSV---KQVKGFGDHLTQAVIDWK 566 Query: 607 --------FHKNTSHTP 615 F N + TP Sbjct: 567 ASCERRFVFRPNEAVTP 583 >gi|291297691|ref|YP_003508969.1| hypothetical protein Snas_0156 [Stackebrandtia nassauensis DSM 44728] gi|290566911|gb|ADD39876.1| protein of unknown function DUF147 [Stackebrandtia nassauensis DSM 44728] Length = 394 Score = 40.9 bits (94), Expect = 0.70, Method: Composition-based stats. Identities = 4/34 (11%), Positives = 16/34 (47%) Query: 574 SFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 F +++ + ++ + L +++G+ A + Sbjct: 348 HFASLQRLLGATVDDLQAVDGVGAARARSVREGL 381 >gi|196034552|ref|ZP_03101961.1| DNA repair protein RadC [Bacillus cereus W] gi|228929500|ref|ZP_04092520.1| DNA repair protein radC [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|195993094|gb|EDX57053.1| DNA repair protein RadC [Bacillus cereus W] gi|228830180|gb|EEM75797.1| DNA repair protein radC [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 225 Score = 40.9 bits (94), Expect = 0.70, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 19/38 (50%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +L F ++M+ ++ E L SI G+ A ++ F Sbjct: 50 KILHHFDGLRMLKDATLEELVSIHGVGIAKATQLIAAF 87 >gi|163798140|ref|ZP_02192076.1| Helicase RecD/TraA [alpha proteobacterium BAL199] gi|159176583|gb|EDP61161.1| Helicase RecD/TraA [alpha proteobacterium BAL199] Length = 727 Score = 40.9 bits (94), Expect = 0.70, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%) Query: 560 INGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKI 603 I GIGP+ R ++++FG V I + P+ L + GI K A +I Sbjct: 88 IRGIGPVYARKMVKAFGEKVFDIIEAEPDRLREVTGIGKVRAKRI 132 >gi|158335307|ref|YP_001516479.1| DNA polymerase I [Acaryochloris marina MBIC11017] gi|158305548|gb|ABW27165.1| DNA polymerase I [Acaryochloris marina MBIC11017] Length = 957 Score = 40.9 bits (94), Expect = 0.70, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 4/36 (11%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590 D I G IG LL +GT+ I +S + + Sbjct: 196 DNIPGVKGIGDKTAVKLLTEYGTLDNIY-ASVDQIK 230 >gi|229158072|ref|ZP_04286142.1| DNA repair protein radC [Bacillus cereus ATCC 4342] gi|228625391|gb|EEK82148.1| DNA repair protein radC [Bacillus cereus ATCC 4342] Length = 181 Score = 40.9 bits (94), Expect = 0.71, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 19/38 (50%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +L F ++M+ ++ E L SI G+ A ++ F Sbjct: 50 KILHHFDGLRMLKDATLEELVSIHGVGIAKATQLIAAF 87 >gi|281419971|ref|ZP_06250970.1| helicase, RecD/TraA family [Prevotella copri DSM 18205] gi|281406098|gb|EFB36778.1| helicase, RecD/TraA family [Prevotella copri DSM 18205] Length = 747 Score = 40.9 bits (94), Expect = 0.71, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 5/57 (8%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN 605 K S L + GIGP L+++ FG T+++I E L + GI KK KI + Sbjct: 83 KYLGSGL--VKGIGPKYAHLIVERFGTDTIEVIED-DIERLYEVAGIGKKRVEKIRD 136 >gi|254168936|ref|ZP_04875776.1| XPG I-region domain protein [Aciduliprofundum boonei T469] gi|197622200|gb|EDY34775.1| XPG I-region domain protein [Aciduliprofundum boonei T469] Length = 339 Score = 40.9 bits (94), Expect = 0.71, Method: Composition-based stats. Identities = 7/24 (29%), Positives = 15/24 (62%) Query: 558 DEINGIGPLRKRLLLQSFGTVKMI 581 + I G+GP L++ +G+++ I Sbjct: 239 EGIKGVGPKTALKLIKKYGSLEKI 262 >gi|256003597|ref|ZP_05428586.1| helicase, RecD/TraA family [Clostridium thermocellum DSM 2360] gi|281416676|ref|ZP_06247696.1| helicase, RecD/TraA family [Clostridium thermocellum JW20] gi|255992388|gb|EEU02481.1| helicase, RecD/TraA family [Clostridium thermocellum DSM 2360] gi|281408078|gb|EFB38336.1| helicase, RecD/TraA family [Clostridium thermocellum JW20] Length = 713 Score = 40.9 bits (94), Expect = 0.71, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFH 608 K S L I GIGP+ + +++ F T+++I P+ L + GI KK I + Sbjct: 83 KYLGSGL--IKGIGPVNAKRIVKVFKEDTIRVIEE-EPDRLIEVPGIGKKRVEMIKEAWQ 139 Query: 609 K 609 Sbjct: 140 N 140 >gi|190149554|ref|YP_001968079.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303249558|ref|ZP_07335765.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251815|ref|ZP_07533717.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307262875|ref|ZP_07544499.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|229470525|sp|B3H0C5|RUVA_ACTP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189914685|gb|ACE60937.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302651632|gb|EFL81781.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860722|gb|EFM92733.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306871780|gb|EFN03500.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 201 Score = 40.9 bits (94), Expect = 0.71, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 13/83 (15%) Query: 533 LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-SPET 588 +R++AH FA +++ + + L + NG+GP +L + +V + + E Sbjct: 53 VREDAHLLFGFA-----QKQDRTLFRELIKTNGVGPKLALAILSAM-SVSQFANAVEHEE 106 Query: 589 LAS---IEGISKKIACKIYNHFH 608 LA I GI +K A ++ Sbjct: 107 LAKLTKIPGIGRKTAERLLVELK 129 >gi|308063716|gb|ADO05603.1| Holliday junction DNA helicase RuvA [Helicobacter pylori Sat464] Length = 183 Score = 40.9 bits (94), Expect = 0.72, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 7/58 (12%) Query: 551 KAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACKI 603 K + L +ING+G +L F ++ + L + GI KK+A KI Sbjct: 68 KILFERLLKINGVGGRIALAILSSFSPNEFESIIATKE--VKRLQQVPGIGKKLADKI 123 >gi|307244055|ref|ZP_07526174.1| DNA ligase (NAD+) [Peptostreptococcus stomatis DSM 17678] gi|306492579|gb|EFM64613.1| DNA ligase (NAD+) [Peptostreptococcus stomatis DSM 17678] Length = 702 Score = 40.9 bits (94), Expect = 0.72, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 25/50 (50%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612 +G +LL + G++ I +S E L IE + ++ + FH++ + Sbjct: 539 VGVKGAKLLADACGSMDKIMAASEEDLIQIEEFGQIMSDSVVKFFHEDKN 588 >gi|293398290|ref|ZP_06642482.1| DNA transport competence protein [Neisseria gonorrhoeae F62] gi|291611296|gb|EFF40379.1| DNA transport competence protein [Neisseria gonorrhoeae F62] Length = 141 Score = 40.9 bits (94), Expect = 0.72, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 72 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLIKVKGIGPAVLAKLKD 119 Score = 38.5 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 64 NINAASQQELEALPGIGPAKAKAIAEY 90 >gi|260888483|ref|ZP_05899746.1| helicase, RecD/TraA family [Selenomonas sputigena ATCC 35185] gi|330838208|ref|YP_004412788.1| helicase, RecD/TraA family [Selenomonas sputigena ATCC 35185] gi|260861680|gb|EEX76180.1| helicase, RecD/TraA family [Selenomonas sputigena ATCC 35185] gi|329745972|gb|AEB99328.1| helicase, RecD/TraA family [Selenomonas sputigena ATCC 35185] Length = 727 Score = 40.9 bits (94), Expect = 0.72, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHF 607 I G+G L+Q FG T+++I + P L + G+ KK A KI+ + Sbjct: 90 IAGVGEAMAHRLVQKFGKETLEIIEK-KPSRLTEVAGVGKKTAAKIHASY 138 >gi|260439692|ref|ZP_05793508.1| ComEA-related protein [Neisseria gonorrhoeae DGI2] gi|291042936|ref|ZP_06568675.1| DNA transport competence protein [Neisseria gonorrhoeae DGI2] gi|291013143|gb|EFE05111.1| DNA transport competence protein [Neisseria gonorrhoeae DGI2] gi|317164625|gb|ADV08166.1| ComE1 [Neisseria gonorrhoeae TCDC-NG08107] gi|317164978|gb|ADV08519.1| ComE1 [Neisseria gonorrhoeae TCDC-NG08107] gi|317165078|gb|ADV08619.1| ComE1 [Neisseria gonorrhoeae TCDC-NG08107] gi|317165312|gb|ADV08853.1| ComE1 [Neisseria gonorrhoeae TCDC-NG08107] Length = 131 Score = 40.9 bits (94), Expect = 0.72, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 62 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLIKVKGIGPAVLAKLKD 109 Score = 38.5 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 54 NINAASQQELEALPGIGPAKAKAIAEY 80 >gi|188527709|ref|YP_001910396.1| Holliday junction DNA helicase RuvA [Helicobacter pylori Shi470] gi|229560035|sp|B2UU34|RUVA_HELPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|188143949|gb|ACD48366.1| Holliday junction DNA helicase motor protein [Helicobacter pylori Shi470] gi|308062206|gb|ADO04094.1| Holliday junction DNA helicase RuvA [Helicobacter pylori Cuz20] Length = 183 Score = 40.9 bits (94), Expect = 0.72, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 7/58 (12%) Query: 551 KAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACKI 603 K + L +ING+G +L F ++ + L + GI KK+A KI Sbjct: 68 KILFERLLKINGVGGRIALAILSSFSPNEFESIIATKE--VKRLQQVPGIGKKLADKI 123 >gi|91201867|emb|CAJ74927.1| similar to DNA repair protein RadC [Candidatus Kuenenia stuttgartiensis] Length = 232 Score = 40.9 bits (94), Expect = 0.72, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 17/39 (43%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + LL +G + +S S L ++GI A +I Sbjct: 55 KKLLSDYGDFRALSAISIGELCKVKGIGPARAAQIKASL 93 >gi|59801540|ref|YP_208252.1| ComE1 [Neisseria gonorrhoeae FA 1090] gi|240122228|ref|ZP_04735190.1| ComE1 [Neisseria gonorrhoeae PID24-1] gi|10505052|gb|AAG18334.1|AF268314_1 ComE [Neisseria gonorrhoeae] gi|10505056|gb|AAG18336.1|AF268315_1 ComE [Neisseria gonorrhoeae] gi|10505059|gb|AAG18337.1|AF268316_1 ComE [Neisseria gonorrhoeae] gi|10505061|gb|AAG18338.1|AF268317_1 ComE [Neisseria gonorrhoeae] gi|59718435|gb|AAW89840.1| DNA-binding competence protein 1 [Neisseria gonorrhoeae FA 1090] Length = 99 Score = 40.9 bits (94), Expect = 0.72, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 30 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLIKVKGIGPAVLAKLKD 77 Score = 38.5 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S + L ++ GI A I + Sbjct: 22 NINAASQQELEALPGIGPAKAKAIAEY 48 >gi|323486257|ref|ZP_08091585.1| hypothetical protein HMPREF9474_03336 [Clostridium symbiosum WAL-14163] gi|323693951|ref|ZP_08108137.1| helicase [Clostridium symbiosum WAL-14673] gi|323400475|gb|EGA92845.1| hypothetical protein HMPREF9474_03336 [Clostridium symbiosum WAL-14163] gi|323501997|gb|EGB17873.1| helicase [Clostridium symbiosum WAL-14673] Length = 767 Score = 40.9 bits (94), Expect = 0.72, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Query: 560 INGIGPLRKRLLLQSFGTVK-MISRSSPETLASIEGISKKIACKI 603 I GIG +++ F T I PE LA I+GIS+K+A I Sbjct: 90 IKGIGAALATRIVKKFKTDTFRIMEEEPERLAEIKGISEKMAMAI 134 >gi|186682634|ref|YP_001865830.1| DNA protecting protein DprA [Nostoc punctiforme PCC 73102] gi|186465086|gb|ACC80887.1| DNA protecting protein DprA [Nostoc punctiforme PCC 73102] Length = 371 Score = 40.9 bits (94), Expect = 0.72, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH---FHKNT 611 +I+GIGP+ R L Q FGT+ ++ L +EG + K+ H Sbjct: 13 QISGIGPVLLRRLQQHFGTLATAWNATKVQLGEVEGFGFQTLEKVVQQRSRLHPEQ 68 >gi|291440662|ref|ZP_06580052.1| 5'-3' exonuclease [Streptomyces ghanaensis ATCC 14672] gi|291343557|gb|EFE70513.1| 5'-3' exonuclease [Streptomyces ghanaensis ATCC 14672] Length = 301 Score = 40.9 bits (94), Expect = 0.73, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 12/28 (42%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584 L + GIG LL FG + I + Sbjct: 197 LPGVPGIGEKTAAKLLAEFGDLAGILAA 224 >gi|261400911|ref|ZP_05987036.1| DNA topoisomerase [Neisseria lactamica ATCC 23970] gi|269209280|gb|EEZ75735.1| DNA topoisomerase [Neisseria lactamica ATCC 23970] Length = 80 Score = 40.9 bits (94), Expect = 0.73, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 11 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLRD 58 >gi|261400011|ref|ZP_05986136.1| DNA topoisomerase [Neisseria lactamica ATCC 23970] gi|269215027|ref|ZP_05987596.2| DNA topoisomerase [Neisseria lactamica ATCC 23970] gi|269215280|ref|ZP_05988050.2| DNA topoisomerase [Neisseria lactamica ATCC 23970] gi|269207910|gb|EEZ74365.1| DNA topoisomerase [Neisseria lactamica ATCC 23970] gi|269208438|gb|EEZ74893.1| DNA topoisomerase [Neisseria lactamica ATCC 23970] gi|269210227|gb|EEZ76682.1| DNA topoisomerase [Neisseria lactamica ATCC 23970] Length = 99 Score = 40.9 bits (94), Expect = 0.73, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L+ + GIGP + + + + F +V + L ++GI + K+ + Sbjct: 30 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLRD 77 >gi|302561571|ref|ZP_07313913.1| 5'-3' exonuclease [Streptomyces griseoflavus Tu4000] gi|302479189|gb|EFL42282.1| 5'-3' exonuclease [Streptomyces griseoflavus Tu4000] Length = 306 Score = 40.9 bits (94), Expect = 0.73, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 12/28 (42%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584 L + GIG LL FG + I + Sbjct: 202 LPGVPGIGEKTAAKLLAEFGDLAGILAA 229 >gi|326204632|ref|ZP_08194488.1| DNA protecting protein DprA [Clostridium papyrosolvens DSM 2782] gi|325985199|gb|EGD46039.1| DNA protecting protein DprA [Clostridium papyrosolvens DSM 2782] Length = 374 Score = 40.9 bits (94), Expect = 0.73, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 3/54 (5%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 L + G+ P + LL F + +I S L + +G+++K I + + Sbjct: 10 LSSLEGLSPKKAFDLLDKFKSPDVIYGLSKNELKNTKGLTEK---NIKELLNSD 60 >gi|239932297|ref|ZP_04689250.1| 5'-3' exonuclease [Streptomyces ghanaensis ATCC 14672] Length = 314 Score = 40.9 bits (94), Expect = 0.73, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 12/28 (42%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584 L + GIG LL FG + I + Sbjct: 210 LPGVPGIGEKTAAKLLAEFGDLAGILAA 237 >gi|229032108|ref|ZP_04188086.1| DNA repair protein radC [Bacillus cereus AH1271] gi|228729198|gb|EEL80196.1| DNA repair protein radC [Bacillus cereus AH1271] Length = 240 Score = 40.9 bits (94), Expect = 0.73, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 19/38 (50%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +L F ++M+ ++ E L SI G+ A ++ F Sbjct: 65 KILHHFDGLRMLKDATLEELVSIHGVGIAKAAQLIAAF 102 >gi|225677161|ref|ZP_03788159.1| transcription elongation factor NusA [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590785|gb|EEH12014.1| transcription elongation factor NusA [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 523 Score = 40.9 bits (94), Expect = 0.73, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 7/54 (12%) Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L+EI G +LL+ F +V+ IS +S + LASIEG ++ IA +++N +K Sbjct: 387 LEEIMG------QLLVTEGFSSVEDISSASIKELASIEGFNEDIANELHNRANK 434 >gi|154148288|ref|YP_001407237.1| DNA polymerase I [Campylobacter hominis ATCC BAA-381] gi|153804297|gb|ABS51304.1| DNA polymerase I (POL I) [Campylobacter hominis ATCC BAA-381] Length = 875 Score = 40.9 bits (94), Expect = 0.73, Method: Composition-based stats. Identities = 9/25 (36%), Positives = 15/25 (60%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISR 583 I GIG + LL++FG+++ I Sbjct: 186 GIKGIGEKGAKKLLENFGSLEKIYE 210 >gi|76787965|ref|YP_329528.1| ComE operon protein 1 [Streptococcus agalactiae A909] gi|76563022|gb|ABA45606.1| ComE operon protein 1, putative [Streptococcus agalactiae A909] Length = 217 Score = 40.9 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 2/55 (3%) Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 KA S L I+G+ R + +L + + + L ++ GI +K K+ Sbjct: 160 KADLSSLQTISGVWAKRAQDILDYRDSQGGFK--TIDDLKNVSGIGEKTLEKLRQ 212 >gi|42783591|ref|NP_980838.1| DNA repair protein RadC [Bacillus cereus ATCC 10987] gi|54036227|sp|Q72ZX2|Y4545_BACC1 RecName: Full=UPF0758 protein BCE_4545 gi|42739520|gb|AAS43446.1| DNA repair protein RadC [Bacillus cereus ATCC 10987] Length = 225 Score = 40.9 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 19/38 (50%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +L F ++M+ ++ E L SI G+ A ++ F Sbjct: 50 KILHHFDGLRMLKDATLEELVSIHGVGVAKATQLIAAF 87 >gi|325570546|ref|ZP_08146272.1| putative competence protein ComEA [Enterococcus casseliflavus ATCC 12755] gi|325156392|gb|EGC68572.1| putative competence protein ComEA [Enterococcus casseliflavus ATCC 12755] Length = 213 Score = 40.9 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 8/53 (15%) Query: 556 PLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L E+ G+G + ++ +G K I + L I GI +K + Sbjct: 160 QLQELPGVGAKKAEAIIAYREEYGFFKQI-----DDLKKITGIGEKTFESLKE 207 >gi|323701838|ref|ZP_08113508.1| DNA protecting protein DprA [Desulfotomaculum nigrificans DSM 574] gi|323533142|gb|EGB23011.1| DNA protecting protein DprA [Desulfotomaculum nigrificans DSM 574] Length = 363 Score = 40.9 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 G GP R L++ FG+V+ ++ L +I + K A K+ Sbjct: 15 PGAGP-RIWQLIKYFGSVEQAWQAGESDLGAIPWLGPKGAQKL 56 >gi|319651725|ref|ZP_08005851.1| DNA repair protein RadC [Bacillus sp. 2_A_57_CT2] gi|317396544|gb|EFV77256.1| DNA repair protein RadC [Bacillus sp. 2_A_57_CT2] Length = 229 Score = 40.9 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 19/37 (51%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 L+ F ++++ +S + + +I+GI A ++ Sbjct: 54 RLITHFEGLRLLKDASLDEITAIKGIGSAKAIQLLAA 90 >gi|304415222|ref|ZP_07395930.1| DNA ligase (NAD(+)-dependent) [Candidatus Regiella insecticola LSR1] gi|304282928|gb|EFL91383.1| DNA ligase (NAD(+)-dependent) [Candidatus Regiella insecticola LSR1] Length = 674 Score = 40.9 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 18/48 (37%) Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 +G L F T+ + + ETL + + +A + N + Sbjct: 522 VGETTAANLAAHFRTLSHLRSADVETLQQVADVGVVVATHVINFLAQE 569 >gi|298246013|ref|ZP_06969819.1| PHP domain protein [Ktedonobacter racemifer DSM 44963] gi|297553494|gb|EFH87359.1| PHP domain protein [Ktedonobacter racemifer DSM 44963] Length = 589 Score = 40.9 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 6/59 (10%) Query: 560 INGIGPLRKRLLLQ--SFGTVKMISRSSPET-LASIEGISKKIACKIYN---HFHKNTS 612 I G+GP + + T+ + ++ + +A I G KK KI ++ Sbjct: 97 IPGVGPKKINAIYDQLHVTTLAELEQACKDDKVAKIPGFGKKTQEKILQGLAFLKQHAD 155 >gi|284048802|ref|YP_003399141.1| helicase, RecD/TraA family [Acidaminococcus fermentans DSM 20731] gi|283953023|gb|ADB47826.1| helicase, RecD/TraA family [Acidaminococcus fermentans DSM 20731] Length = 721 Score = 40.9 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 6/55 (10%) Query: 561 NGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI---YNHFHKN 610 G+GP + ++ FG T++++ + PE L + GI KK A I Y +N Sbjct: 93 KGVGPAMAQRIVDQFGEDTLEVLEK-FPERLREVSGIGKKKAEAIITSYGELREN 146 >gi|262276542|ref|ZP_06054351.1| exonuclease IX [Grimontia hollisae CIP 101886] gi|262220350|gb|EEY71666.1| exonuclease IX [Grimontia hollisae CIP 101886] Length = 258 Score = 40.9 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590 + GIGP LLQ +GT++ + + E + Sbjct: 186 GVPGIGPKTASTLLQRYGTLEQLYAA--EDIE 215 >gi|261749390|ref|YP_003257075.1| DNA ligase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497482|gb|ACX83932.1| DNA ligase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 678 Score = 40.9 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 23/49 (46%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 I +G + L + F + + ++ L SI GI KKI+ I +F Sbjct: 516 GIPHVGEYISKKLTEKFLNINSLIQADEAQLTSISGIGKKISESIKTYF 564 >gi|257876954|ref|ZP_05656607.1| DNA-binding protein [Enterococcus casseliflavus EC20] gi|257811120|gb|EEV39940.1| DNA-binding protein [Enterococcus casseliflavus EC20] Length = 208 Score = 40.9 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 8/53 (15%) Query: 556 PLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L E+ G+G + ++ +G K I + L I GI +K + Sbjct: 155 QLQELPGVGAKKAEAIIAYREEYGFFKQI-----DDLKKITGIGEKTFESLKE 202 >gi|257874395|ref|ZP_05654048.1| DNA-binding protein [Enterococcus casseliflavus EC10] gi|257808559|gb|EEV37381.1| DNA-binding protein [Enterococcus casseliflavus EC10] Length = 213 Score = 40.9 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 8/53 (15%) Query: 556 PLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L E+ G+G + ++ +G K I + L I GI +K + Sbjct: 160 QLQELPGVGAKKAEAIIAYREEYGFFKQI-----DDLKKITGIGEKTFESLKE 207 >gi|257868065|ref|ZP_05647718.1| late competence protein ComEA [Enterococcus casseliflavus EC30] gi|257802148|gb|EEV31051.1| late competence protein ComEA [Enterococcus casseliflavus EC30] Length = 208 Score = 40.9 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 8/53 (15%) Query: 556 PLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L E+ G+G + ++ +G K I + L I GI +K + Sbjct: 155 QLQELPGVGAKKAEAIIAYREEYGFFKQI-----DDLKKITGIGEKTFESLKE 202 >gi|227497092|ref|ZP_03927340.1| DNA integrity scanning protein [Actinomyces urogenitalis DSM 15434] gi|226833349|gb|EEH65732.1| DNA integrity scanning protein [Actinomyces urogenitalis DSM 15434] Length = 356 Score = 40.9 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 27/52 (51%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L +I + + R +++ +G+++ + S E L +++G+ + A + + Sbjct: 292 ILSKIPRLPLVTARAVVEHWGSLQAVLGVSLEELEALDGVGPRRARTLRDGL 343 >gi|256838291|ref|ZP_05543801.1| DNA polymerase I [Parabacteroides sp. D13] gi|256739210|gb|EEU52534.1| DNA polymerase I [Parabacteroides sp. D13] Length = 925 Score = 40.9 bits (94), Expect = 0.75, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 4/36 (11%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590 D I G +G + LL FG+++ + ++ + L Sbjct: 192 DNIPGCPGVGEKTAQKLLTEFGSIENLL-ANTDKLK 226 >gi|218133029|ref|ZP_03461833.1| hypothetical protein BACPEC_00890 [Bacteroides pectinophilus ATCC 43243] gi|217991902|gb|EEC57906.1| hypothetical protein BACPEC_00890 [Bacteroides pectinophilus ATCC 43243] Length = 656 Score = 40.9 bits (94), Expect = 0.75, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 7/70 (10%) Query: 541 AITTHRKRRK---KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597 AI R R K YS I +G ++++++ GT+ I ++ E L +I+G+ + Sbjct: 484 AID--RSRHTTLPKLIYS--LGIANVGLSNAKMIVKNTGTLDRILSATREELCAIDGVGE 539 Query: 598 KIACKIYNHF 607 IA ++F Sbjct: 540 VIADSFVSYF 549 >gi|110667807|ref|YP_657618.1| DNA repair and recombination protein radA [Haloquadratum walsbyi DSM 16790] gi|109625554|emb|CAJ51980.1| probable DNA repair and recombination protein radA [Haloquadratum walsbyi DSM 16790] Length = 520 Score = 40.9 bits (94), Expect = 0.75, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605 L I G+ R L + F T ++ +SP L ++ I A +I+ Sbjct: 232 LRGITGVSETRANHLRTAGFETRSAVATASPHELTAVPSIGTNTAQQIHA 281 >gi|224541319|ref|ZP_03681858.1| hypothetical protein CATMIT_00479 [Catenibacterium mitsuokai DSM 15897] gi|224525756|gb|EEF94861.1| hypothetical protein CATMIT_00479 [Catenibacterium mitsuokai DSM 15897] Length = 204 Score = 40.9 bits (94), Expect = 0.76, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 544 THRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKI 599 +K+ +K + L + GIG +L + G + I + + L I GI K Sbjct: 77 GFKKKEEKELFQKLILVKGIGCKTAIGILAT-GEIDAIIDAIEGKNIAYLKKIPGIGPKA 135 Query: 600 ACKIYNHFH 608 A +I H Sbjct: 136 AQQIILDLH 144 >gi|194333788|ref|YP_002015648.1| PHP domain-containing protein [Prosthecochloris aestuarii DSM 271] gi|194311606|gb|ACF46001.1| PHP domain protein [Prosthecochloris aestuarii DSM 271] Length = 574 Score = 40.9 bits (94), Expect = 0.76, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Query: 548 RRKKAAYSPLDEINGIGPLRKRLLLQSF--GTVKMISRSSPE-TLASIEGISKKIACKIY 604 + A++S L EI G+GP + + L + ++ + ++ + +A + G KK I Sbjct: 87 KNAHASFSELMEIPGLGPRKVKALYDALDIRNIEELEEAAEQGRIALVAGFGKKSQQNIL 146 Query: 605 N 605 Sbjct: 147 K 147 Score = 38.9 bits (89), Expect = 2.3, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 8/59 (13%) Query: 557 LDEINGIG-PLRKRLL-------LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L + GIG L K++L L+ T++ + +S L I G+ + +Y+ Sbjct: 56 LTRLPGIGRDLSKKILEIVETGHLRFLDTLEKNAHASFSELMEIPGLGPRKVKALYDAL 114 >gi|30264522|ref|NP_846899.1| DNA repair protein RadC [Bacillus anthracis str. Ames] gi|47529985|ref|YP_021333.1| DNA repair protein RadC [Bacillus anthracis str. 'Ames Ancestor'] gi|49187346|ref|YP_030598.1| DNA repair protein RadC [Bacillus anthracis str. Sterne] gi|49478639|ref|YP_038504.1| DNA repair protein RadC [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65321823|ref|ZP_00394782.1| COG2003: DNA repair proteins [Bacillus anthracis str. A2012] gi|165872011|ref|ZP_02216652.1| DNA repair protein RadC [Bacillus anthracis str. A0488] gi|167636192|ref|ZP_02394496.1| DNA repair protein RadC [Bacillus anthracis str. A0442] gi|167640700|ref|ZP_02398960.1| DNA repair protein RadC [Bacillus anthracis str. A0193] gi|170688713|ref|ZP_02879918.1| DNA repair protein RadC [Bacillus anthracis str. A0465] gi|170708383|ref|ZP_02898827.1| DNA repair protein RadC [Bacillus anthracis str. A0389] gi|177653967|ref|ZP_02936008.1| DNA repair protein RadC [Bacillus anthracis str. A0174] gi|190566980|ref|ZP_03019896.1| DNA repair protein RadC [Bacillus anthracis Tsiankovskii-I] gi|225866435|ref|YP_002751813.1| DNA repair protein RadC [Bacillus cereus 03BB102] gi|227817234|ref|YP_002817243.1| DNA repair protein RadC [Bacillus anthracis str. CDC 684] gi|228917092|ref|ZP_04080650.1| DNA repair protein radC [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228948168|ref|ZP_04110452.1| DNA repair protein radC [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123994|ref|ZP_04253186.1| DNA repair protein radC [Bacillus cereus 95/8201] gi|229601494|ref|YP_002868738.1| DNA repair protein RadC [Bacillus anthracis str. A0248] gi|254687056|ref|ZP_05150914.1| DNA repair protein RadC [Bacillus anthracis str. CNEVA-9066] gi|254724618|ref|ZP_05186401.1| DNA repair protein RadC [Bacillus anthracis str. A1055] gi|254736558|ref|ZP_05194264.1| DNA repair protein RadC [Bacillus anthracis str. Western North America USA6153] gi|254741596|ref|ZP_05199283.1| DNA repair protein RadC [Bacillus anthracis str. Kruger B] gi|254754806|ref|ZP_05206841.1| DNA repair protein RadC [Bacillus anthracis str. Vollum] gi|254757638|ref|ZP_05209665.1| DNA repair protein RadC [Bacillus anthracis str. Australia 94] gi|301055961|ref|YP_003794172.1| DNA repair protein [Bacillus anthracis CI] gi|33301484|sp|Q81LD7|Y4685_BACAN RecName: Full=UPF0758 protein BA_4685/GBAA_4685/BAS4351 gi|54036223|sp|Q6HD72|Y4187_BACHK RecName: Full=UPF0758 protein BT9727_4187 gi|254764425|sp|C3P9D9|Y4704_BACAA RecName: Full=UPF0758 protein BAA_4704 gi|254764426|sp|C3L6Y5|Y4721_BACAC RecName: Full=UPF0758 protein BAMEG_4721 gi|254764427|sp|C1ETQ0|Y4566_BACC3 RecName: Full=UPF0758 protein BCA_4566 gi|30259180|gb|AAP28385.1| DNA repair protein RadC [Bacillus anthracis str. Ames] gi|47505133|gb|AAT33809.1| DNA repair protein RadC [Bacillus anthracis str. 'Ames Ancestor'] gi|49181273|gb|AAT56649.1| DNA repair protein RadC [Bacillus anthracis str. Sterne] gi|49330195|gb|AAT60841.1| DNA repair protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164712301|gb|EDR17837.1| DNA repair protein RadC [Bacillus anthracis str. A0488] gi|167511272|gb|EDR86658.1| DNA repair protein RadC [Bacillus anthracis str. A0193] gi|167528413|gb|EDR91181.1| DNA repair protein RadC [Bacillus anthracis str. A0442] gi|170126758|gb|EDS95641.1| DNA repair protein RadC [Bacillus anthracis str. A0389] gi|170667399|gb|EDT18157.1| DNA repair protein RadC [Bacillus anthracis str. A0465] gi|172081022|gb|EDT66100.1| DNA repair protein RadC [Bacillus anthracis str. A0174] gi|190561971|gb|EDV15940.1| DNA repair protein RadC [Bacillus anthracis Tsiankovskii-I] gi|225786937|gb|ACO27154.1| DNA repair protein RadC [Bacillus cereus 03BB102] gi|227003430|gb|ACP13173.1| DNA repair protein RadC [Bacillus anthracis str. CDC 684] gi|228659296|gb|EEL14944.1| DNA repair protein radC [Bacillus cereus 95/8201] gi|228811526|gb|EEM57863.1| DNA repair protein radC [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228842510|gb|EEM87600.1| DNA repair protein radC [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229265902|gb|ACQ47539.1| DNA repair protein RadC [Bacillus anthracis str. A0248] gi|300378130|gb|ADK07034.1| DNA repair protein [Bacillus cereus biovar anthracis str. CI] Length = 225 Score = 40.9 bits (94), Expect = 0.76, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 19/38 (50%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 +L F ++M+ ++ E L SI G+ A ++ F Sbjct: 50 KILHHFDGLRMLKDATLEELVSIHGVGVAKATQLIAAF 87 >gi|325677919|ref|ZP_08157561.1| DNA repair protein RadC [Ruminococcus albus 8] gi|324110473|gb|EGC04647.1| DNA repair protein RadC [Ruminococcus albus 8] Length = 229 Score = 40.5 bits (93), Expect = 0.76, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 LL+ FG ++ + + L ++G+ K A ++ N Sbjct: 52 RLLKKFGNIRTVLTAPVTDLCQVQGVGVKCAEQL-NFL 88 >gi|240145514|ref|ZP_04744115.1| DNA processing protein DprA [Roseburia intestinalis L1-82] gi|257202330|gb|EEV00615.1| DNA processing protein DprA [Roseburia intestinalis L1-82] Length = 361 Score = 40.5 bits (93), Expect = 0.76, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 23/47 (48%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603 L I GIG + L+ + G+ + + + + L I G+ +K A I Sbjct: 8 LSNIPGIGIRTRNRLIGAAGSAREVYGLTEKQLLLIPGVEEKHAAGI 54 >gi|16077156|ref|NP_387969.1| DNA integrity scanning protein DisA [Bacillus subtilis subsp. subtilis str. 168] gi|221307899|ref|ZP_03589746.1| DNA integrity scanning protein DisA [Bacillus subtilis subsp. subtilis str. 168] gi|221312220|ref|ZP_03594025.1| DNA integrity scanning protein DisA [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317154|ref|ZP_03598448.1| DNA integrity scanning protein DisA [Bacillus subtilis subsp. subtilis str. JH642] gi|221321417|ref|ZP_03602711.1| DNA integrity scanning protein DisA [Bacillus subtilis subsp. subtilis str. SMY] gi|296333085|ref|ZP_06875539.1| DNA integrity scanning protein DisA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672787|ref|YP_003864458.1| DNA integrity scanning protein DisA [Bacillus subtilis subsp. spizizenii str. W23] gi|321313758|ref|YP_004206045.1| DNA integrity scanning protein DisA [Bacillus subtilis BSn5] gi|586902|sp|P37573|DISA_BACSU RecName: Full=DNA integrity scanning protein disA gi|467476|dbj|BAA05322.1| unknown [Bacillus subtilis] gi|2632355|emb|CAB11864.1| DNA integrity scanning protein; cell cycle checkpoint DNA scanning protein [Bacillus subtilis subsp. subtilis str. 168] gi|291482460|dbj|BAI83535.1| DNA integrity scanning protein [Bacillus subtilis subsp. natto BEST195] gi|296149701|gb|EFG90596.1| DNA integrity scanning protein DisA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411030|gb|ADM36148.1| DNA integrity scanning protein DisA [Bacillus subtilis subsp. spizizenii str. W23] gi|320020032|gb|ADV95018.1| DNA integrity scanning protein DisA [Bacillus subtilis BSn5] Length = 360 Score = 40.5 bits (93), Expect = 0.76, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 17/35 (48%) Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 FG + I +S E L +EGI + A KI + Sbjct: 315 FGVLPRIIEASAEELDEVEGIGEVRAQKIKKGLKR 349 >gi|121601792|ref|YP_988342.1| DNA polymerase I [Bartonella bacilliformis KC583] gi|120613969|gb|ABM44570.1| DNA polymerase I [Bartonella bacilliformis KC583] Length = 968 Score = 40.5 bits (93), Expect = 0.76, Method: Composition-based stats. Identities = 9/21 (42%), Positives = 11/21 (52%) Query: 559 EINGIGPLRKRLLLQSFGTVK 579 I GIGP LL FG++ Sbjct: 198 GIPGIGPKTAAQLLNQFGSLD 218 >gi|315649732|ref|ZP_07902816.1| DNA integrity scanning protein DisA [Paenibacillus vortex V453] gi|315274920|gb|EFU38296.1| DNA integrity scanning protein DisA [Paenibacillus vortex V453] Length = 358 Score = 40.5 bits (93), Expect = 0.77, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 23/54 (42%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 L++I + + R L+ F + I +S L ++GI + A I + Sbjct: 294 ILNKIPRLPNVIIRNLVDQFHDLSSIMSASIHELDEVDGIGEVRARTIKEGLKR 347 >gi|260881563|ref|ZP_05404712.2| competence protein [Mitsuokella multacida DSM 20544] gi|260848766|gb|EEX68773.1| competence protein [Mitsuokella multacida DSM 20544] Length = 224 Score = 40.5 bits (93), Expect = 0.77, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 2/50 (4%) Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605 LD + GIGP + +++ F + + E + ++GI + K+ + Sbjct: 173 ELDTLPGIGPAMAQRIIE-FRETEGAFTA-IEDIKKVKGIGEAKFEKMKD 220 Score = 39.3 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 8/27 (29%), Positives = 14/27 (51%) Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606 I+ +S E L ++ GI +A +I Sbjct: 165 NINTASAEELDTLPGIGPAMAQRIIEF 191 >gi|171911947|ref|ZP_02927417.1| DNA polymerase I [Verrucomicrobium spinosum DSM 4136] Length = 971 Score = 40.5 bits (93), Expect = 0.77, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 15/57 (26%) Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLA-----SIEG------ISKKIA 600 D I GI G L+Q FG+V+ + + + ++ ISK++A Sbjct: 196 DNIPGIAGVGEKTAAKLIQQFGSVEAMLD-RVDEIEGKLKDKVKAGAEMARISKQLA 251 >gi|39995494|ref|NP_951445.1| DNA repair protein RadC [Geobacter sulfurreducens PCA] gi|54036228|sp|Q74G62|Y386_GEOSL RecName: Full=UPF0758 protein GSU0386 gi|39982257|gb|AAR33718.1| DNA repair protein RadC [Geobacter sulfurreducens PCA] gi|298504494|gb|ADI83217.1| protein of unknown function DUF2466 [Geobacter sulfurreducens KN400] Length = 229 Score = 40.5 bits (93), Expect = 0.77, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 19/39 (48%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 R LLQ G ++ ++ ++ L +++G+ A I Sbjct: 52 RALLQECGDLRTLAGATVSELCAVKGMGTAKATSIKAAL 90 >gi|253584371|ref|ZP_04861569.1| DNA polymerase I [Fusobacterium varium ATCC 27725] gi|251834943|gb|EES63506.1| DNA polymerase I [Fusobacterium varium ATCC 27725] Length = 907 Score = 40.5 bits (93), Expect = 0.77, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 4/45 (8%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599 D I G IGP + +L+ +G ++ + + + L I GI K + Sbjct: 190 DGIPGVRKIGPKKAVPMLEKYGNLEGVYE-NIDKLTEIPGIGKSL 233 >gi|237785928|ref|YP_002906633.1| hypothetical protein ckrop_1348 [Corynebacterium kroppenstedtii DSM 44385] gi|237758840|gb|ACR18090.1| hypothetical protein ckrop_1348 [Corynebacterium kroppenstedtii DSM 44385] Length = 131 Score = 40.5 bits (93), Expect = 0.77, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 15/52 (28%) Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISK-KIA 600 L I G+GP ++ F ++ + LA ++GI K+A Sbjct: 80 ELTAIPGVGPKTASAIIAYREQNGPFRSI--------DQLAEVKGIGPAKLA 123 >gi|291542878|emb|CBL15988.1| DNA ligase, NAD-dependent [Ruminococcus bromii L2-63] Length = 661 Score = 40.5 bits (93), Expect = 0.78, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 6/63 (9%) Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 K+ + L I IG +++ ++F T+ I + E I+G +A + Sbjct: 494 KSKENELFRLVFALGIRNIGLKAAKIICENFATIDDIMSAKAEDFEKIDGFGAVMAESLE 553 Query: 605 NHF 607 N+F Sbjct: 554 NYF 556 >gi|291390625|ref|XP_002711804.1| PREDICTED: excision repair cross-complementing rodent repair deficiency, complementation group 4 [Oryctolagus cuniculus] Length = 909 Score = 40.5 bits (93), Expect = 0.78, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 L ++ G+ R ++ + ++ S + LA I G + A ++++ H Sbjct: 845 LLKMPGVNAKNCRSVMNHVKNIAELATLSQDELARILG-NAVNAKQLHDFLH 895 >gi|259501108|ref|ZP_05744010.1| DNA ligase [Lactobacillus iners DSM 13335] gi|302190444|ref|ZP_07266698.1| DNA ligase [Lactobacillus iners AB-1] gi|259167802|gb|EEW52297.1| DNA ligase [Lactobacillus iners DSM 13335] Length = 672 Score = 40.5 bits (93), Expect = 0.78, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 25/53 (47%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611 I+ +G RL+ Q F + I + S L I+ I + IA + +F + + Sbjct: 513 GIDHVGAKAARLIAQKFHDLNTIRKCSIADLMQIDTIGQTIAESMVKYFEQQS 565 >gi|217076565|ref|YP_002334281.1| DNA repair protein [Thermosipho africanus TCF52B] gi|217036418|gb|ACJ74940.1| DNA repair protein [Thermosipho africanus TCF52B] Length = 213 Score = 40.5 bits (93), Expect = 0.78, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Query: 569 RLLLQSF-GTVKMISRSSPETLASIEGISKKIACKIYNH 606 + L ++F ++K IS +S + L ++G+ A I Sbjct: 39 KNLFETFDKSLKKISTASIDELCKVKGLGTVKAVTILAA 77 >gi|222056019|ref|YP_002538381.1| Helix-hairpin-helix DNA-binding class 1 [Geobacter sp. FRC-32] gi|221565308|gb|ACM21280.1| Helix-hairpin-helix DNA-binding class 1 [Geobacter sp. FRC-32] Length = 189 Score = 40.5 bits (93), Expect = 0.78, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 14/56 (25%) Query: 558 DEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + + GIGP + ++ F S E L S++GIS+ KI F Sbjct: 139 EALPGIGPTTAKDIVNYRQDNGGF--------CSIEELKSVKGISEGKVEKIRGFF 186 >gi|262383147|ref|ZP_06076284.1| DNA polymerase I [Bacteroides sp. 2_1_33B] gi|262296025|gb|EEY83956.1| DNA polymerase I [Bacteroides sp. 2_1_33B] Length = 921 Score = 40.5 bits (93), Expect = 0.79, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 4/36 (11%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590 D I G +G + LL FG+++ + ++ + L Sbjct: 188 DNIPGCPGVGEKTAQKLLTEFGSIENLL-ANTDKLK 222 >gi|255013148|ref|ZP_05285274.1| DNA polymerase I [Bacteroides sp. 2_1_7] Length = 921 Score = 40.5 bits (93), Expect = 0.79, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 4/36 (11%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590 D I G +G + LL FG+++ + ++ + L Sbjct: 188 DNIPGCPGVGEKTAQKLLTEFGSIENLL-ANTDKLK 222 >gi|308233598|ref|ZP_07664335.1| DNA ligase, NAD-dependent [Atopobium vaginae DSM 15829] gi|328944216|ref|ZP_08241680.1| DNA ligase [Atopobium vaginae DSM 15829] gi|327491135|gb|EGF22910.1| DNA ligase [Atopobium vaginae DSM 15829] Length = 792 Score = 40.5 bits (93), Expect = 0.79, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 27/50 (54%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608 I +G L++ ++ ++ + R+ + +A+I+G+ KIA + + H Sbjct: 626 GIRHVGASVAELIVATYPDLESLLRADKDEIAAIDGVGPKIAASLVDFLH 675 >gi|225019213|ref|ZP_03708405.1| hypothetical protein CLOSTMETH_03166 [Clostridium methylpentosum DSM 5476] gi|224948017|gb|EEG29226.1| hypothetical protein CLOSTMETH_03166 [Clostridium methylpentosum DSM 5476] Length = 737 Score = 40.5 bits (93), Expect = 0.79, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%) Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603 I GIGP ++ FG T++ I + PE L ++GIS+K+A + Sbjct: 94 IKGIGPALAERIVSMFGEQTLERIQQ-DPECLTQVKGISQKMAENL 138 >gi|301311753|ref|ZP_07217678.1| DNA polymerase type I [Bacteroides sp. 20_3] gi|300830313|gb|EFK60958.1| DNA polymerase type I [Bacteroides sp. 20_3] Length = 921 Score = 40.5 bits (93), Expect = 0.79, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 4/36 (11%) Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590 D I G +G + LL FG+++ + ++ + L Sbjct: 188 DNIPGCPGVGEKTAQKLLTEFGSIENLL-ANTDKLK 222 >gi|297517186|ref|ZP_06935572.1| nucleotide excision repair endonuclease [Escherichia coli OP50] Length = 193 Score = 40.5 bits (93), Expect = 0.79, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 57/177 (32%), Gaps = 14/177 (7%) Query: 81 KPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASVDAVEKTINS 137 +P FN LR ++ + + +K + FG FA+ A + + + Sbjct: 1 QPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANRRAALQALQT 56 Query: 138 LQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNH 196 + L R R C +KRC+G C G+ S E++ + ++ + L Sbjct: 57 IADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCW 116 Query: 197 NLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNL 253 A ++ E H + N + + + + + Sbjct: 117 PW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEATTLIRTPAGFDHDGY 167 >gi|271964468|ref|YP_003338664.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] gi|270507643|gb|ACZ85921.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] Length = 901 Score = 40.5 bits (93), Expect = 0.79, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 7/51 (13%) Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 L I G+G ++ FG+++ + + ++G K+ K+ +H Sbjct: 200 LKNIPGVGEKTAAKWIREFGSLEEL----VNRIDEVKG---KVGDKLRDHL 243 >gi|37702659|gb|AAR00931.1|U86402_1 DNA polymerase I [Bacillus subtilis] Length = 880 Score = 40.5 bits (93), Expect = 0.79, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 6/48 (12%) Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 + G+G LL+ F +V+ + PE++ + G KK+ K+ Sbjct: 194 GVPGVGEKTAIKLLKQFDSVEKL----PESIDEVSG--KKLKEKLEEF 235 >gi|89898693|ref|YP_515803.1| Holliday junction DNA helicase RuvA [Chlamydophila felis Fe/C-56] gi|123749524|sp|Q252Y0|RUVA_CHLFF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|89332065|dbj|BAE81658.1| holliday junction DNA helicase [Chlamydophila felis Fe/C-56] Length = 207 Score = 40.5 bits (93), Expect = 0.79, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 5/46 (10%) Query: 562 GIGPLRKRLLLQSFGTVKM---ISRS-SPETLASIEGISKKIACKI 603 G+GP +L +F + I+R+ + LAS+ GI KK A K+ Sbjct: 81 GVGPKTGLAILNTF-ALSKLCSIARAEDVKALASVPGIGKKTAEKL 125 >gi|326203335|ref|ZP_08193200.1| DNA integrity scanning, DisA, linker region [Clostridium papyrosolvens DSM 2782] gi|325986593|gb|EGD47424.1| DNA integrity scanning, DisA, linker region [Clostridium papyrosolvens DSM 2782] Length = 361 Score = 40.5 bits (93), Expect = 0.80, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 19/39 (48%) Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607 + ++ F ++ + ++S E L +EGI + A I Sbjct: 308 KNIIGEFQNLQGVVKASIEDLDKVEGIGEVRAKSITEGL 346 >gi|320533798|ref|ZP_08034393.1| comEA protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320133989|gb|EFW26342.1| comEA protein [Actinomyces sp. oral