BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|255764496|ref|YP_003065012.2| excinuclease ABC subunit C
[Candidatus Liberibacter asiaticus str. psy62]
(616 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|255764496|ref|YP_003065012.2| excinuclease ABC subunit C [Candidatus Liberibacter asiaticus str.
psy62]
Length = 616
Score = 1287 bits (3331), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 616/616 (100%), Positives = 616/616 (100%)
Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF
Sbjct: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS
Sbjct: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY
Sbjct: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN
Sbjct: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP
Sbjct: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI
Sbjct: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN
Sbjct: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ
Sbjct: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF
Sbjct: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA
Sbjct: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
Query: 601 CKIYNHFHKNTSHTPT 616
CKIYNHFHKNTSHTPT
Sbjct: 601 CKIYNHFHKNTSHTPT 616
>gi|254780572|ref|YP_003064985.1| hypothetical protein CLIBASIA_02295 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 192
Score = 32.3 bits (72), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 12/99 (12%)
Query: 6 MPECPGVYQMLDI-----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQI-NNIR 59
MP V+ +L+I AG+ L+ AY++ ++I++ S+ +TH +T N++R
Sbjct: 29 MPYFMLVFAILEISLSFTAGQ-LFESAAYDVARKIRTGEISSKNTHSLTEFRRVFCNDLR 87
Query: 60 FTVTCTEVEA-----LLLEANMIKRLKPRFNILLRDDKS 93
C+E E L L+ IK L+ + R DKS
Sbjct: 88 VLFNCSENEIGRPYDLYLDVKQIKSLQEITETVPRKDKS 126
>gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62]
Length = 806
Score = 28.9 bits (63), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 163 QIKRCSGPCTGEISSEKYMEFVH---EAKKFLSGGNHNLKEKIARNMNQATLKEDYESA- 218
+++R GP +I EK + + EAK L E++ + N + + Y+ A
Sbjct: 688 RVQRIHGPFVSDIEVEKVVSHLKTQGEAKYIDIKDKILLNEEMRFSENSSVADDLYKQAV 747
Query: 219 -IIHRDRLAALSHIQNHNDSIYNR 241
I+ RD A++S+IQ YNR
Sbjct: 748 DIVLRDNKASISYIQRRLGIGYNR 771
>gi|254780276|ref|YP_003064689.1| dihydrodipicolinate synthase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 292
Score = 27.3 bits (59), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 15/70 (21%)
Query: 197 NLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNLACI 256
N+ +I QA ++ DY A++++D+L L +L+ + C+
Sbjct: 209 NVVPRICAEFQQAMIRGDYRQALLYQDKLMPLHQ---------------ALFMEPAVCCV 253
Query: 257 QTCFFHFGQN 266
+ G+N
Sbjct: 254 KYALSRLGRN 263
>gi|254780129|ref|YP_003064542.1| hypothetical protein CLIBASIA_00040 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 220
Score = 26.6 bits (57), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/54 (20%), Positives = 26/54 (48%)
Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNI 58
++ P ++D+ G++ ++ K L KS++ HT ++ I + +I
Sbjct: 159 ELTGTPSPNGLIDLWGQIWFLDKGKRLGLSFKSFVERWFHTQQVGSSIGAVKHI 212
>gi|254780397|ref|YP_003064810.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 343
Score = 24.6 bits (52), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 225 LAALSHIQNHNDSIYNRMDCFSLYHNKNLAC--IQTCFFH 262
+ A+++++N N +I + S++H+ C + C +H
Sbjct: 234 IPAITYLRNDNKNIIGPLPADSMFHHSARQCYDVAICMYH 273
>gi|254780608|ref|YP_003065021.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Liberibacter asiaticus str. psy62]
Length = 346
Score = 24.3 bits (51), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 26 GKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL-LLEANMIKRLK 81
G AY++ +KS++ S R+TH + Q + V T A L E+ ++R++
Sbjct: 124 GIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQ 180
>gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
Length = 976
Score = 24.3 bits (51), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 326 KVKITVPKQGEKRKIIEQALINAHRS-HTQKLSTEISHQM 364
+ I P QG I +A+I+ H+S KL+T++ Q+
Sbjct: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
>gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 610
Score = 23.9 bits (50), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLN 521
+LKK N+ + I +++ G R + K + + + L+L+
Sbjct: 106 LLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILD 145
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 389,593
Number of Sequences: 1233
Number of extensions: 15958
Number of successful extensions: 46
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 10
length of query: 616
length of database: 328,796
effective HSP length: 79
effective length of query: 537
effective length of database: 231,389
effective search space: 124255893
effective search space used: 124255893
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 41 (20.4 bits)