BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|255764496|ref|YP_003065012.2| excinuclease ABC subunit C [Candidatus Liberibacter asiaticus str. psy62] (616 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|255764496|ref|YP_003065012.2| excinuclease ABC subunit C [Candidatus Liberibacter asiaticus str. psy62] Length = 616 Score = 1287 bits (3331), Expect = 0.0, Method: Compositional matrix adjust. Identities = 616/616 (100%), Positives = 616/616 (100%) Query: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF Sbjct: 1 MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60 Query: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS Sbjct: 61 TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120 Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY Sbjct: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180 Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN Sbjct: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240 Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP Sbjct: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300 Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI Sbjct: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360 Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN Sbjct: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420 Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ Sbjct: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480 Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF Sbjct: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540 Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA Sbjct: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600 Query: 601 CKIYNHFHKNTSHTPT 616 CKIYNHFHKNTSHTPT Sbjct: 601 CKIYNHFHKNTSHTPT 616 >gi|254780572|ref|YP_003064985.1| hypothetical protein CLIBASIA_02295 [Candidatus Liberibacter asiaticus str. psy62] Length = 192 Score = 32.3 bits (72), Expect = 0.024, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 12/99 (12%) Query: 6 MPECPGVYQMLDI-----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQI-NNIR 59 MP V+ +L+I AG+ L+ AY++ ++I++ S+ +TH +T N++R Sbjct: 29 MPYFMLVFAILEISLSFTAGQ-LFESAAYDVARKIRTGEISSKNTHSLTEFRRVFCNDLR 87 Query: 60 FTVTCTEVEA-----LLLEANMIKRLKPRFNILLRDDKS 93 C+E E L L+ IK L+ + R DKS Sbjct: 88 VLFNCSENEIGRPYDLYLDVKQIKSLQEITETVPRKDKS 126 >gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62] Length = 806 Score = 28.9 bits (63), Expect = 0.26, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 5/84 (5%) Query: 163 QIKRCSGPCTGEISSEKYMEFVH---EAKKFLSGGNHNLKEKIARNMNQATLKEDYESA- 218 +++R GP +I EK + + EAK L E++ + N + + Y+ A Sbjct: 688 RVQRIHGPFVSDIEVEKVVSHLKTQGEAKYIDIKDKILLNEEMRFSENSSVADDLYKQAV 747 Query: 219 -IIHRDRLAALSHIQNHNDSIYNR 241 I+ RD A++S+IQ YNR Sbjct: 748 DIVLRDNKASISYIQRRLGIGYNR 771 >gi|254780276|ref|YP_003064689.1| dihydrodipicolinate synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 292 Score = 27.3 bits (59), Expect = 0.80, Method: Compositional matrix adjust. Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 15/70 (21%) Query: 197 NLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNLACI 256 N+ +I QA ++ DY A++++D+L L +L+ + C+ Sbjct: 209 NVVPRICAEFQQAMIRGDYRQALLYQDKLMPLHQ---------------ALFMEPAVCCV 253 Query: 257 QTCFFHFGQN 266 + G+N Sbjct: 254 KYALSRLGRN 263 >gi|254780129|ref|YP_003064542.1| hypothetical protein CLIBASIA_00040 [Candidatus Liberibacter asiaticus str. psy62] Length = 220 Score = 26.6 bits (57), Expect = 1.3, Method: Compositional matrix adjust. Identities = 11/54 (20%), Positives = 26/54 (48%) Query: 5 QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNI 58 ++ P ++D+ G++ ++ K L KS++ HT ++ I + +I Sbjct: 159 ELTGTPSPNGLIDLWGQIWFLDKGKRLGLSFKSFVERWFHTQQVGSSIGAVKHI 212 >gi|254780397|ref|YP_003064810.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 343 Score = 24.6 bits (52), Expect = 4.5, Method: Compositional matrix adjust. Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 2/40 (5%) Query: 225 LAALSHIQNHNDSIYNRMDCFSLYHNKNLAC--IQTCFFH 262 + A+++++N N +I + S++H+ C + C +H Sbjct: 234 IPAITYLRNDNKNIIGPLPADSMFHHSARQCYDVAICMYH 273 >gi|254780608|ref|YP_003065021.1| ribosomal large subunit pseudouridine synthase C [Candidatus Liberibacter asiaticus str. psy62] Length = 346 Score = 24.3 bits (51), Expect = 6.4, Method: Compositional matrix adjust. Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Query: 26 GKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL-LLEANMIKRLK 81 G AY++ +KS++ S R+TH + Q + V T A L E+ ++R++ Sbjct: 124 GIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQ 180 >gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62] Length = 976 Score = 24.3 bits (51), Expect = 7.1, Method: Compositional matrix adjust. Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Query: 326 KVKITVPKQGEKRKIIEQALINAHRS-HTQKLSTEISHQM 364 + I P QG I +A+I+ H+S KL+T++ Q+ Sbjct: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 >gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 610 Score = 23.9 bits (50), Expect = 8.4, Method: Compositional matrix adjust. Identities = 10/40 (25%), Positives = 22/40 (55%) Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLN 521 +LKK N+ + I +++ G R + K + + + L+L+ Sbjct: 106 LLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILD 145 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.322 0.135 0.399 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 389,593 Number of Sequences: 1233 Number of extensions: 15958 Number of successful extensions: 46 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 40 Number of HSP's gapped (non-prelim): 10 length of query: 616 length of database: 328,796 effective HSP length: 79 effective length of query: 537 effective length of database: 231,389 effective search space: 124255893 effective search space used: 124255893 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 41 (20.4 bits)