HHsearch alignment for GI: 255764497 and conserved domain: PRK11365
>PRK11365 ssuC alkanesulfonate transporter permease subunit; Provisional.
Probab=100.00 E-value=1.4e-29 Score=231.13 Aligned_cols=240 Identities=17% Similarity=0.219 Sum_probs=202.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1688889999999999999999999----864102331352036687074068999999999999999999999999999
Q gi|255764497|r 13 RRIFPNIFDLLAFVLVIGIINILLH----GIQETTVPRDIVDIVPITLDVHSLPQYASRTTLRMLSAMVISLLFTFVYAT 88 (587)
Q Consensus 13 rr~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~ 88 (587)
T Consensus 6 ~rw~~r~~p~l~~v~ll~~We~~~~~~~v~~~~lP~P~~V~~~~~~l~~~g~l~~~~~~Tl~r~~~Gf~l~~~~Gi~lGi 85 (263)
T PRK11365 6 KKWLLRVAPWFLPVGIVAVWQLASSVGWLSTRILPSPEGVVMAFWTLSASGELWQHLAISSWRALIGFSIGGSLGLILGL 85 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998999999999999999995048986589989999999998548459999999999999999999999999999
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 99715026789999999997432899999999998401455421047999999999853599999999997299899999
Q gi|255764497|r 89 LAAKSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEV 168 (587)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~ea 168 (587)
T Consensus 86 l~g~~~~~~~~~~P~~~~l~~iP~ia~~Pl~ilwfG~g--------~~~~i~~i~~~~~~pi~~nt~~Gv~~v~~~~~~~ 157 (263)
T PRK11365 86 ISGLSRWGERLLDTSIQMLRNVPHLALIPLVILWFGID--------ESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEM 157 (263)
T ss_pred HHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHCCC--------CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 99986999987585999997657999999999997157--------4204478865104288999988875499999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 99628882012365552621578999999999999899899999735444203678899999986311325699999999
Q gi|255764497|r 169 SRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTM 248 (587)
Q Consensus 169 a~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i 248 (587)
T Consensus 158 ar~~g~s~~~~l~~V~lP~alP~i~~glria~~~a~~~~v~aE~i~~~~------GLG~~i~~a~~~~~~~~v~a~ii~i 231 (263)
T PRK11365 158 ARSYGLSGIPLFIHVILPGALPSIMVGVRFALGLMWLTLIVAETISANS------GIGYLAMNAREFLQTDVVVVAIILY 231 (263)
T ss_pred HHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 9872999999999989800688999999999999999999999984469------8889999999870688999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999998987544
Q gi|255764497|r 249 LGVIFLYDQLLFRPMIVWS 267 (587)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~ 267 (587)
T Consensus 232 ~llg~~l~~~~-~~lerrl 249 (263)
T PRK11365 232 ALLGKLADVSA-QLLERLW 249 (263)
T ss_pred HHHHHHHHHHH-HHHHHHH
T ss_conf 99999999999-9999993