HHsearch alignment for GI: 255764497 and conserved domain: TIGR00969

>TIGR00969 3a0106s02 sulfate ABC transporter, permease protein; InterPro: IPR005667 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown , that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices, This entry describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulphate ABC transporter; GO: 0015563 uptake transmembrane transporter activity, 0006810 transport, 0016020 membrane.
Probab=99.89  E-value=2.1e-23  Score=186.23  Aligned_cols=235  Identities=14%  Similarity=0.081  Sum_probs=185.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCC-CCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-HHH
Q ss_conf             9999999999999998641023-31352036687074068999999999999999999999999999997150267-899
Q gi|255764497|r   23 LAFVLVIGIINILLHGIQETTV-PRDIVDIVPITLDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLG-MVL  100 (587)
Q Consensus        23 ~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~~-~~~  100 (587)
T Consensus        28 I~~~l~Y~~liL~lP~~~l~~~~f~~gl~~~~~~~tdP~~~~A~~lT~~~aliav~lN~vFG~~~AWvLtR~~FPGr~lL  107 (280)
T TIGR00969        28 IGIALLYVFLILLLPVIALFVQAFSKGLEQFWQNATDPNAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLL  107 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf             99999999999999999999999745988999984298899999999999999999999999999999971269825899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-CCCC--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             999999974328999999999984-0145--------5421047999999999853599999999997299899999996
Q gi|255764497|r  101 VPILDIMQSIPILGFLTFTVVYFM-NLYP--------GKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRS  171 (587)
Q Consensus       101 ~~~l~~~~~iP~~~~~~~~~~~f~-~~~~--------~~~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~  171 (587)
T Consensus       108 da~~DLPFAlspvVAGL~l~llYg~~Gw~G~~~~~fgiqI~F~~~G~~lAmiFvs~PFVvRev~PVL~Elg~e~EEAA~t  187 (280)
T TIGR00969       108 DALIDLPFALSPVVAGLTLALLYGSNGWLGSWLASFGIQIIFTWPGVALAMIFVSLPFVVREVQPVLEELGTEAEEAAAT  187 (280)
T ss_pred             HHHHHCCCCCCHHHHHHEEEEEECCCCCCCCHHHHCCCEEEEECCCEEEEEEEECCCCEEEEECCCHHHCCCCHHHHHHH
T ss_conf             99862133425067533000453577851132301786899841214666534216804543100134138557899986


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf             28882012365552621578999999999999899899999735444203678899999986311325699999999999
Q gi|255764497|r  172 FRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGV  251 (587)
Q Consensus       172 ~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~  251 (587)
T Consensus       188 LGA~~WQtFwRV~LP~i~w~llyGv~Lt~aRAlGEFGaV~~vSgn-i~gkt~~lplli~~~l~~Yd~~gA~~ia~vL~l~  266 (280)
T TIGR00969       188 LGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFGAVVVVSGN-IPGKTLTLPLLIFERLEQYDYPGAYVIAAVLLLV  266 (280)
T ss_pred             CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEEECC-CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             289983026787668872678886787655654301107899446-8863120156644476603607899999999999


Q ss_pred             HHHHHHH
Q ss_conf             9999999
Q gi|255764497|r  252 IFLYDQL  258 (587)
Q Consensus       252 ~~~~~~~  258 (587)
T Consensus       267 slv~L~~  273 (280)
T TIGR00969       267 SLVTLFL  273 (280)
T ss_pred             HHHHHHH
T ss_conf             9999999