HHsearch alignment for GI: 255764497 and conserved domain: TIGR03416
>TIGR03416 ABC_choXWV_perm choline ABC transporter, permease protein.
Probab=99.97 E-value=1e-27 Score=217.64 Aligned_cols=189 Identities=18% Similarity=0.277 Sum_probs=181.7
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 70740689999999999999999999999999999971502678999999999743289999999999840145542104
Q gi|255764497|r 55 TLDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVIGA 134 (587)
Q Consensus 55 ~~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~~~~~ 134 (587)
T Consensus 78 ~i~~~G~W~~am~Tlalv~~av~la~~iGiPlGI~~~~s~~~~~~l~pild~mQTiP~fvyLip~i~lfGiG-------- 149 (267)
T TIGR03416 78 LIINQGYWEETVETLALVLSATVVCMVIGVPLGIAAAHRPWLYAIMRPVLDLMQTLPTFVYLIPALVLFGLG-------- 149 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC--------
T ss_conf 999871589999999999999999999999999999816999999999998743154679999999994887--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999999998535999999999972998999999962888201236555262157899999999999989989999973
Q gi|255764497|r 135 ELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIV 214 (587)
Q Consensus 135 ~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g 214 (587)
T Consensus 150 ~~~aiia~~iya~~P~ir~T~~Gir~V~~~~iEaa~~~G~s~~q~l~~V~lPlA~P~Il~G~nq~i~~al~mvviaa~IG 229 (267)
T TIGR03416 150 MVPGLISTVIFAIPAPIRLTHLGISSVPQELVEAGEAFGATPSQLLWKVELPYAMPQIMAGLTQTIMLSLSMVVIAALVG 229 (267)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 05699999999988999999999985676899999983998988979941841589999999999999999999999967
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 54442036788999999863113256999999999999999999
Q gi|255764497|r 215 VGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQL 258 (587)
Q Consensus 215 ~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 258 (587)
T Consensus 230 a~-------GLG~~v~~~l~~~~~g~~l~~gi~iv~lAiilDRl 266 (267)
T TIGR03416 230 AD-------GLGVPVVRALNTVNIALGFEAGLAIVVLAIVLDRI 266 (267)
T ss_pred CC-------CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 88-------53699999986335688999999999999999704