HHsearch alignment for GI: 255764497 and conserved domain: cd06261

>cd06261 TM_PBP2 Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. F
Probab=99.86  E-value=6.2e-19  Score=153.82  Aligned_cols=175  Identities=23%  Similarity=0.310  Sum_probs=143.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHH
Q ss_conf             9999999999999999999999999971502-67899999999974328999999999984014554-210479999999
Q gi|255764497|r   65 ASRTTLRMLSAMVISLLFTFVYATLAAKSRR-LGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGK-VIGAELAAIFAI  142 (587)
Q Consensus        65 ~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~-~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~-~~~~~~~~i~~~  142 (587)
T Consensus         1 l~nSl~i~~~~~~i~~~ig~~~a~~~~~~~~~~~~~~~~~~~i~~~iP~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   80 (190)
T cd06261           1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILA   80 (190)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             98799999999999999999999999951850889999999999980399999999999984123221478999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf             99853599999999997299899999996288820123655526215789999999999998998999997354442036
Q gi|255764497|r  143 FTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPL  222 (587)
Q Consensus       143 ~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~  222 (587)
T Consensus        81 ~~~~~p~~~~~~~~~l~~i~~~~~eaA~~~Ga~~~~~~~~i~lP~~~p~i~~~~~l~~~~~~~~~~~~~~l~~~~~~~~-  159 (190)
T cd06261          81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGP-  159 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-
T ss_conf             9999999999999999838999999999869973465699879963999999999999999999999999968999968-


Q ss_pred             HHHHHHHHHHH-HHCCHHHH
Q ss_conf             78899999986-31132569
Q gi|255764497|r  223 PGIGSYIALAI-KEQDLLAI  241 (587)
Q Consensus       223 ~g~g~~~~~~~-~~~~~~~~  241 (587)
T Consensus       160 -~~~~~~~~~~~~~~~~~~~  178 (190)
T cd06261         160 -GTGLLLIFAILFPGDLGVA  178 (190)
T ss_pred             -CHHHHHHHHHHHCCCHHHH
T ss_conf             -3999999999875786999