HHsearch alignment for GI: 255764497 and conserved domain: cd06261
>cd06261 TM_PBP2 Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. F
Probab=99.86 E-value=6.2e-19 Score=153.82 Aligned_cols=175 Identities=23% Similarity=0.310 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHH
Q ss_conf 9999999999999999999999999971502-67899999999974328999999999984014554-210479999999
Q gi|255764497|r 65 ASRTTLRMLSAMVISLLFTFVYATLAAKSRR-LGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGK-VIGAELAAIFAI 142 (587)
Q Consensus 65 ~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~-~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~-~~~~~~~~i~~~ 142 (587)
T Consensus 1 l~nSl~i~~~~~~i~~~ig~~~a~~~~~~~~~~~~~~~~~~~i~~~iP~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 80 (190)
T cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILA 80 (190)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 98799999999999999999999999951850889999999999980399999999999984123221478999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 99853599999999997299899999996288820123655526215789999999999998998999997354442036
Q gi|255764497|r 143 FTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPL 222 (587)
Q Consensus 143 ~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~ 222 (587)
T Consensus 81 ~~~~~p~~~~~~~~~l~~i~~~~~eaA~~~Ga~~~~~~~~i~lP~~~p~i~~~~~l~~~~~~~~~~~~~~l~~~~~~~~- 159 (190)
T cd06261 81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGP- 159 (190)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-
T ss_conf 9999999999999999838999999999869973465699879963999999999999999999999999968999968-
Q ss_pred HHHHHHHHHHH-HHCCHHHH
Q ss_conf 78899999986-31132569
Q gi|255764497|r 223 PGIGSYIALAI-KEQDLLAI 241 (587)
Q Consensus 223 ~g~g~~~~~~~-~~~~~~~~ 241 (587)
T Consensus 160 -~~~~~~~~~~~~~~~~~~~ 178 (190)
T cd06261 160 -GTGLLLIFAILFPGDLGVA 178 (190)
T ss_pred -CHHHHHHHHHHHCCCHHHH
T ss_conf -3999999999875786999