HHsearch alignment for GI: 255764497 and conserved domain: cd06261

>cd06261 TM_PBP2 Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. F
Probab=99.78  E-value=2e-16  Score=135.60  Aligned_cols=178  Identities=19%  Similarity=0.239  Sum_probs=142.9

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHH
Q ss_conf             99999999999997310000112454366-7899985446677544469999999998315566-----50479999999
Q gi|255764497|r  384 CITMFRVVVLIIIASIIWIPVGIWIGFRP-HISSKIQPFAQLLAAFPANVFFPLVVSCVSYYHL-----NPNLWLSLLMI  457 (587)
Q Consensus       384 ~~tl~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  457 (587)
T Consensus         2 ~nSl~i~~~~~~i~~~ig~~~a~~~~~~~~~~~~~~~~~~~i~~~iP~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   81 (190)
T cd06261           2 LNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILAL   81 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             87999999999999999999999999518508899999999999803999999999999841232214789999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             99999999999999973998999999974988789989998574577899999999999999999999850556442237
Q gi|255764497|r  458 FGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGHIHLRTT  537 (587)
Q Consensus       458 ~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~~~~~~~~  537 (587)
T Consensus        82 ~~~~p~~~~~~~~~l~~i~~~~~eaA~~~Ga~~~~~~~~i~lP~~~p~i~~~~~l~~~~~~~~~~~~~~l~~~~~--~~~  159 (190)
T cd06261          82 LLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEA--PGP  159 (190)
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCC
T ss_conf             999999999999999838999999999869973465699879963999999999999999999999999968999--968


Q ss_pred             CHHHHHHHHH-HHCCHHHHHHHHHHHH
Q ss_conf             8379999999-7349798999999999
Q gi|255764497|r  538 GLGAYIAEST-EKGSFPEVVLGVLIMC  563 (587)
Q Consensus       538 GlG~~i~~~~-~~~~~~~~~~~~~~~~  563 (587)
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~a~~i~~~  186 (190)
T cd06261         160 GTGLLLIFAILFPGDLGVAAAVALILL  186 (190)
T ss_pred             CHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             399999999987578699999999999