Query gi|255764497|ref|YP_003065010.2| ABC transporter permease [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 587
No_of_seqs 281 out of 4973
Neff 9.0
Searched_HMMs 39220
Date Mon May 30 01:08:36 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764497.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4986 ABC-type anion transpo 100.0 0 0 430.2 30.8 518 58-587 4-523 (523)
2 TIGR03262 PhnU2 putative 2-ami 100.0 0 0 380.9 54.2 523 11-585 2-540 (546)
3 COG1178 ThiP ABC-type Fe3+ tra 100.0 0 0 368.9 53.1 469 49-574 42-529 (540)
4 PRK09433 thiP thiamine transpo 100.0 9.8E-45 0 340.9 54.0 464 51-575 42-527 (536)
5 COG0600 TauC ABC-type nitrate/ 100.0 1.6E-31 4E-36 245.2 23.9 194 378-582 58-251 (258)
6 COG0600 TauC ABC-type nitrate/ 100.0 6.6E-30 1.7E-34 233.4 28.3 214 40-268 38-251 (258)
7 PRK10160 taurine transporter s 100.0 2E-30 5.2E-35 237.2 24.8 194 377-585 74-267 (275)
8 PRK11365 ssuC alkanesulfonate 100.0 1.3E-30 3.3E-35 238.6 23.4 187 377-573 56-242 (263)
9 PRK11365 ssuC alkanesulfonate 100.0 1.4E-29 3.5E-34 231.1 27.6 240 13-267 6-249 (263)
10 PRK10160 taurine transporter s 100.0 2.9E-29 7.4E-34 228.8 28.5 196 57-267 72-267 (275)
11 TIGR03416 ABC_choXWV_perm chol 100.0 4.7E-29 1.2E-33 227.3 24.1 189 374-573 79-267 (267)
12 PRK10952 glycine betaine trans 100.0 4.5E-29 1.1E-33 227.4 23.8 197 55-266 135-331 (354)
13 TIGR03416 ABC_choXWV_perm chol 100.0 1E-27 2.5E-32 217.6 28.4 189 55-258 78-266 (267)
14 PRK10971 sulfate/thiosulfate t 100.0 3E-27 7.6E-32 214.2 28.3 260 9-270 3-273 (277)
15 COG4176 ProW ABC-type proline/ 100.0 2.9E-29 7.3E-34 228.8 16.3 196 55-265 84-279 (290)
16 TIGR03226 PhnU 2-aminoethylpho 100.0 2E-26 5.2E-31 208.1 27.3 250 11-265 36-306 (312)
17 PRK11602 cysW sulfate/thiosulf 100.0 2E-26 5E-31 208.3 26.7 221 49-270 50-283 (291)
18 PRK10683 putrescine transporte 100.0 3E-25 7.7E-30 199.7 30.3 239 20-262 37-308 (317)
19 PRK10952 glycine betaine trans 100.0 7E-26 1.8E-30 204.2 26.5 203 360-573 122-324 (354)
20 PRK10592 putrescine transporte 99.9 1.6E-23 4E-28 187.2 30.3 262 5-272 2-272 (281)
21 COG1176 PotB ABC-type spermidi 99.9 9.7E-24 2.5E-28 188.7 28.7 201 49-253 52-268 (287)
22 PRK09497 potB spermidine/putre 99.9 8.6E-24 2.2E-28 189.1 25.9 229 22-255 18-267 (285)
23 PRK09500 potC spermidine/putre 99.9 9.3E-23 2.4E-27 181.6 29.7 246 13-266 3-254 (257)
24 COG4176 ProW ABC-type proline/ 99.9 2.1E-24 5.5E-29 193.5 20.3 191 372-573 83-273 (290)
25 PRK09421 modB molybdate ABC tr 99.9 3.6E-23 9.2E-28 184.6 26.1 214 56-270 2-226 (229)
26 CHL00187 cysT sulfate transpor 99.9 8.7E-23 2.2E-27 181.8 24.3 180 49-228 39-230 (235)
27 COG1177 PotC ABC-type spermidi 99.9 1.2E-21 3.2E-26 173.4 29.5 226 23-255 20-251 (267)
28 COG0555 CysU ABC-type sulfate 99.9 6.2E-23 1.6E-27 182.9 20.4 221 47-269 41-271 (274)
29 COG1174 OpuBB ABC-type proline 99.9 2.5E-22 6.4E-27 178.5 23.2 195 375-581 20-214 (221)
30 TIGR01581 Mo_ABC_porter NifC-l 99.9 3.5E-22 8.9E-27 177.4 21.3 204 48-252 6-220 (226)
31 PRK10971 sulfate/thiosulfate t 99.9 5.1E-21 1.3E-25 168.9 26.5 207 377-585 54-274 (277)
32 TIGR03255 PhnV 2-aminoethylpho 99.9 1E-20 2.6E-25 166.8 27.5 196 54-255 60-259 (272)
33 COG1174 OpuBB ABC-type proline 99.9 2.8E-21 7.2E-26 170.8 23.4 192 56-262 19-210 (221)
34 TIGR02139 permease_CysT sulfat 99.9 2.4E-22 6.2E-27 178.6 14.3 223 45-269 32-264 (265)
35 PRK10592 putrescine transporte 99.9 1.4E-20 3.5E-25 165.9 22.9 205 377-586 59-273 (281)
36 TIGR02141 modB_ABC molybdate A 99.9 5E-21 1.3E-25 169.0 20.2 192 67-259 2-206 (212)
37 TIGR00969 3a0106s02 sulfate AB 99.9 2.1E-23 5.4E-28 186.2 7.9 235 23-258 28-273 (280)
38 PRK09421 modB molybdate ABC tr 99.9 6.6E-20 1.7E-24 160.9 25.7 209 377-586 5-228 (229)
39 TIGR01253 thiP thiamine/thiami 99.9 2.7E-16 6.9E-21 134.7 44.0 449 41-552 28-498 (519)
40 COG4149 ModC ABC-type molybdat 99.9 1.7E-21 4.2E-26 172.5 17.1 198 59-257 3-211 (225)
41 COG0395 UgpE ABC-type sugar tr 99.9 8.1E-19 2.1E-23 153.0 30.3 209 53-265 62-273 (281)
42 TIGR03226 PhnU 2-aminoethylpho 99.9 1.3E-19 3.3E-24 158.8 26.0 200 377-585 88-308 (312)
43 TIGR03255 PhnV 2-aminoethylpho 99.9 5.6E-20 1.4E-24 161.4 23.9 190 380-573 67-263 (272)
44 PRK11602 cysW sulfate/thiosulf 99.9 2.6E-19 6.6E-24 156.6 26.3 206 377-583 60-282 (291)
45 COG1177 PotC ABC-type spermidi 99.9 6.9E-20 1.8E-24 160.7 22.4 192 378-573 62-255 (267)
46 TIGR03262 PhnU2 putative 2-ami 99.9 4.4E-19 1.1E-23 154.9 26.1 202 55-260 324-530 (546)
47 PRK10782 DL-methionine transpo 99.9 4.3E-19 1.1E-23 155.0 25.1 196 61-266 9-213 (217)
48 PRK10998 malG maltose transpor 99.9 3.8E-18 9.6E-23 148.2 29.4 204 60-265 80-287 (296)
49 PRK10782 DL-methionine transpo 99.9 3E-19 7.6E-24 156.1 23.7 198 378-584 8-217 (217)
50 PRK09500 potC spermidine/putre 99.9 1E-19 2.5E-24 159.6 21.2 198 377-579 54-253 (257)
51 COG1178 ThiP ABC-type Fe3+ tra 99.9 5E-19 1.3E-23 154.5 24.3 199 59-261 329-530 (540)
52 PRK09433 thiP thiamine transpo 99.9 3.4E-18 8.8E-23 148.4 28.1 206 52-262 318-528 (536)
53 PRK10561 glycerol-3-phosphate 99.9 4.9E-18 1.2E-22 147.3 28.5 244 22-265 9-275 (280)
54 cd06261 TM_PBP2 Transmembrane 99.9 6.2E-19 1.6E-23 153.8 23.0 175 65-241 1-178 (190)
55 PRK10683 putrescine transporte 99.9 8.2E-19 2.1E-23 152.9 22.3 197 377-578 93-309 (317)
56 PRK10973 glycerol-3-phosphate 99.8 1.3E-17 3.4E-22 144.2 26.3 201 59-265 71-274 (281)
57 PRK09497 potB spermidine/putre 99.8 5E-19 1.3E-23 154.5 18.3 204 378-586 60-283 (285)
58 COG1175 UgpA ABC-type sugar tr 99.8 1.5E-16 3.9E-21 136.5 30.8 220 46-265 51-289 (295)
59 PRK11275 pstC phosphate transp 99.8 9.4E-17 2.4E-21 138.0 28.8 212 58-270 68-315 (319)
60 PRK11268 pstA phosphate transp 99.8 6.3E-17 1.6E-21 139.2 27.0 157 57-216 75-234 (292)
61 pfam00528 BPD_transp_1 Binding 99.8 2.7E-18 6.8E-23 149.2 19.6 178 402-586 2-182 (183)
62 TIGR01183 ntrB nitrate ABC tra 99.8 1.7E-18 4.4E-23 150.6 17.9 189 376-573 12-200 (203)
63 TIGR02141 modB_ABC molybdate A 99.8 4.5E-18 1.1E-22 147.6 19.5 191 385-576 2-212 (212)
64 COG0581 PstA ABC-type phosphat 99.8 2.3E-16 5.8E-21 135.2 28.0 155 59-216 67-224 (292)
65 TIGR02140 permease_CysW sulfat 99.8 8.4E-19 2.1E-23 152.9 13.8 203 52-255 36-262 (275)
66 COG4149 ModC ABC-type molybdat 99.8 4.1E-18 1E-22 147.9 16.7 206 378-585 4-224 (225)
67 COG0555 CysU ABC-type sulfate 99.8 4.9E-18 1.3E-22 147.3 17.0 207 377-585 53-273 (274)
68 COG4986 ABC-type anion transpo 99.8 7.4E-18 1.9E-22 146.0 17.6 208 60-271 314-521 (523)
69 COG0581 PstA ABC-type phosphat 99.8 2.9E-16 7.5E-21 134.4 25.6 209 376-585 66-292 (292)
70 TIGR01581 Mo_ABC_porter NifC-l 99.8 3E-17 7.6E-22 141.6 19.8 189 377-566 17-220 (226)
71 CHL00187 cysT sulfate transpor 99.8 4.6E-17 1.2E-21 140.2 20.5 172 377-549 49-234 (235)
72 COG3639 ABC-type phosphate/pho 99.8 9.2E-16 2.4E-20 130.8 26.9 190 58-262 84-277 (283)
73 COG0395 UgpE ABC-type sugar tr 99.8 1.5E-16 3.9E-21 136.5 22.1 196 378-576 70-269 (281)
74 pfam00528 BPD_transp_1 Binding 99.8 1.1E-16 2.8E-21 137.6 21.3 167 83-258 1-169 (183)
75 COG0573 PstC ABC-type phosphat 99.8 1E-15 2.6E-20 130.5 26.1 201 58-258 74-298 (310)
76 COG3833 MalG ABC-type maltose 99.8 1.3E-15 3.2E-20 129.8 26.4 203 59-265 69-273 (282)
77 cd06261 TM_PBP2 Transmembrane 99.8 2E-16 5.1E-21 135.6 21.1 178 384-563 2-186 (190)
78 TIGR02138 phosphate_pstC phosp 99.8 3E-15 7.6E-20 127.1 26.9 158 59-216 67-249 (317)
79 PRK11268 pstA phosphate transp 99.8 1.1E-15 2.9E-20 130.1 24.7 206 374-584 74-292 (292)
80 COG1176 PotB ABC-type spermidi 99.8 2.8E-16 7.2E-21 134.5 21.5 188 378-569 63-270 (287)
81 PRK10998 malG maltose transpor 99.8 4E-16 1E-20 133.5 22.0 195 378-575 80-283 (296)
82 PRK10973 glycerol-3-phosphate 99.8 2.4E-15 6.1E-20 127.8 25.1 196 378-575 72-270 (281)
83 TIGR00974 3a0107s02c phosphate 99.8 1.4E-15 3.5E-20 129.5 23.5 170 44-214 39-217 (302)
84 PRK11275 pstC phosphate transp 99.8 6.3E-14 1.6E-18 117.5 31.4 206 378-584 70-315 (319)
85 COG2011 AbcD ABC-type metal io 99.8 5.6E-16 1.4E-20 132.4 20.6 198 59-269 12-221 (222)
86 TIGR01183 ntrB nitrate ABC tra 99.7 7.1E-16 1.8E-20 131.6 18.2 190 57-259 11-200 (203)
87 TIGR02139 permease_CysT sulfat 99.7 8.8E-18 2.3E-22 145.5 8.0 203 377-584 46-265 (265)
88 PRK10999 malF maltose transpor 99.7 5.7E-15 1.5E-19 125.0 22.1 197 377-573 281-511 (520)
89 COG2011 AbcD ABC-type metal io 99.7 2.9E-15 7.5E-20 127.2 20.2 201 374-584 9-222 (222)
90 COG4135 ABC-type uncharacteriz 99.7 6.5E-12 1.7E-16 102.9 36.5 423 49-534 42-500 (551)
91 PRK10561 glycerol-3-phosphate 99.7 3.9E-15 1E-19 126.3 19.9 202 380-585 54-277 (280)
92 TIGR00974 3a0107s02c phosphate 99.7 4E-15 1E-19 126.2 18.8 205 377-586 57-301 (302)
93 COG1175 UgpA ABC-type sugar tr 99.7 3.4E-13 8.6E-18 112.2 28.1 202 377-578 64-288 (295)
94 COG4208 CysW ABC-type sulfate 99.7 5.8E-16 1.5E-20 132.3 12.5 202 52-254 54-265 (287)
95 TIGR00969 3a0106s02 sulfate AB 99.7 1.9E-17 5E-22 143.0 4.0 191 378-569 66-270 (280)
96 TIGR01097 3A0109s02M phosphona 99.7 2.3E-14 5.8E-19 120.7 18.3 185 62-261 2-190 (192)
97 COG0573 PstC ABC-type phosphat 99.7 3E-14 7.7E-19 119.8 18.7 205 377-586 75-307 (310)
98 PRK09494 glnP glutamine ABC tr 99.7 3.2E-13 8.1E-18 112.4 23.8 159 58-216 12-171 (219)
99 TIGR02138 phosphate_pstC phosp 99.7 6.3E-14 1.6E-18 117.5 19.3 210 372-586 62-317 (317)
100 PRK09494 glnP glutamine ABC tr 99.6 1.5E-12 3.9E-17 107.4 25.5 204 374-587 10-218 (219)
101 PRK11123 arginine transporter 99.6 2.6E-12 6.6E-17 105.8 25.2 206 59-272 5-235 (238)
102 COG3833 MalG ABC-type maltose 99.6 6.9E-14 1.7E-18 117.2 17.1 197 378-576 70-269 (282)
103 PRK11123 arginine transporter 99.6 4.6E-12 1.2E-16 103.9 24.3 201 375-585 3-230 (238)
104 PRK10999 malF maltose transpor 99.6 1.2E-12 3.1E-17 108.1 19.1 202 60-261 282-513 (520)
105 PRK11122 artM arginine transpo 99.6 1.9E-11 4.7E-16 99.6 25.1 204 58-271 5-219 (222)
106 COG0765 HisM ABC-type amino ac 99.6 5.9E-12 1.5E-16 103.2 22.5 159 57-217 14-174 (222)
107 PRK09471 oppB oligopeptide tra 99.6 1.1E-11 2.7E-16 101.3 23.1 187 63-255 92-289 (306)
108 COG4132 ABC-type uncharacteriz 99.6 2.5E-11 6.4E-16 98.6 24.9 179 51-230 45-242 (282)
109 PRK11122 artM arginine transpo 99.6 1.8E-11 4.6E-16 99.7 23.8 154 375-529 4-170 (222)
110 COG0765 HisM ABC-type amino ac 99.6 1.7E-11 4.4E-16 99.8 23.7 197 375-586 14-219 (222)
111 COG3639 ABC-type phosphate/pho 99.5 9.4E-12 2.4E-16 101.7 21.5 195 375-585 83-281 (283)
112 COG1173 DppC ABC-type dipeptid 99.5 6.5E-11 1.6E-15 95.6 24.8 165 61-234 81-247 (289)
113 PRK10913 dipeptide transporter 99.5 1.3E-10 3.3E-15 93.4 26.2 169 60-237 93-263 (300)
114 PRK09881 ATP-dependent peptide 99.5 1.2E-10 3.1E-15 93.6 25.9 169 60-237 88-258 (296)
115 PRK10352 nickel transporter pe 99.5 1.2E-11 3.1E-16 100.9 20.6 190 61-256 94-292 (314)
116 COG1173 DppC ABC-type dipeptid 99.5 7.4E-11 1.9E-15 95.2 23.9 206 375-586 77-287 (289)
117 PRK10914 dipeptide transporter 99.5 4.1E-11 1.1E-15 97.1 21.6 186 64-255 95-320 (339)
118 PRK10417 nikC nickel transport 99.5 2.1E-10 5.3E-15 92.0 25.2 170 60-238 61-232 (272)
119 COG0601 DppB ABC-type dipeptid 99.5 1E-10 2.6E-15 94.3 23.0 202 378-586 90-314 (317)
120 TIGR02140 permease_CysW sulfat 99.5 1.1E-13 2.7E-18 115.9 7.4 192 377-569 43-262 (275)
121 COG4662 TupA ABC-type tungstat 99.5 6.8E-11 1.7E-15 95.5 21.5 204 55-260 15-222 (227)
122 PRK09881 ATP-dependent peptide 99.4 9.3E-10 2.4E-14 87.3 25.0 206 375-586 85-294 (296)
123 COG4209 LplB ABC-type polysacc 99.4 8.9E-10 2.3E-14 87.4 22.2 239 19-257 21-294 (309)
124 COG4215 ArtQ ABC-type arginine 99.4 2.7E-10 6.8E-15 91.2 17.9 202 59-269 8-225 (230)
125 PRK10417 nikC nickel transport 99.4 8.6E-10 2.2E-14 87.5 20.4 205 376-586 59-267 (272)
126 PRK10352 nickel transporter pe 99.4 3.5E-10 8.9E-15 90.3 18.3 205 376-587 91-308 (314)
127 PRK10913 dipeptide transporter 99.3 5.8E-10 1.5E-14 88.7 19.3 206 375-586 90-299 (300)
128 COG4208 CysW ABC-type sulfate 99.3 4.1E-11 1E-15 97.1 12.9 193 377-570 61-267 (287)
129 PRK09471 oppB oligopeptide tra 99.3 9.4E-10 2.4E-14 87.2 19.3 203 377-586 88-305 (306)
130 PRK10914 dipeptide transporter 99.3 2.5E-09 6.5E-14 84.1 20.0 204 376-586 89-336 (339)
131 COG0601 DppB ABC-type dipeptid 99.3 6.7E-09 1.7E-13 81.0 21.8 191 61-257 91-300 (317)
132 COG4662 TupA ABC-type tungstat 99.2 1.8E-08 4.5E-13 78.0 21.4 195 377-573 19-221 (227)
133 COG4215 ArtQ ABC-type arginine 99.2 7.8E-09 2E-13 80.5 18.8 166 375-550 6-188 (230)
134 TIGR02790 nickel_nikC nickel A 99.2 1.2E-07 3E-12 72.0 24.0 188 59-257 55-248 (258)
135 TIGR03004 ectoine_ehuC ectoine 99.1 7.9E-08 2E-12 73.3 20.0 204 61-270 7-211 (216)
136 COG4135 ABC-type uncharacteriz 99.1 2.3E-07 5.9E-12 69.9 22.0 154 58-219 343-499 (551)
137 TIGR01253 thiP thiamine/thiami 99.1 4.8E-07 1.2E-11 67.5 23.1 201 50-255 310-515 (519)
138 COG4132 ABC-type uncharacteriz 99.0 1.4E-07 3.7E-12 71.4 19.0 137 448-586 146-282 (282)
139 TIGR03004 ectoine_ehuC ectoine 99.0 4.7E-08 1.2E-12 74.9 16.5 201 377-584 5-211 (216)
140 TIGR02790 nickel_nikC nickel A 99.0 8.2E-08 2.1E-12 73.1 17.5 195 374-572 52-249 (258)
141 TIGR02789 nickel_nikB nickel A 99.0 2E-08 5.1E-13 77.5 13.3 189 63-257 97-294 (315)
142 TIGR03003 ectoine_ehuD ectoine 99.0 4E-08 1E-12 75.4 14.6 150 378-527 18-176 (218)
143 TIGR01097 3A0109s02M phosphona 99.0 8.7E-08 2.2E-12 72.9 16.2 182 381-573 3-188 (192)
144 COG4209 LplB ABC-type polysacc 99.0 1.2E-07 2.9E-12 72.0 16.0 103 469-571 190-294 (309)
145 TIGR03003 ectoine_ehuD ectoine 98.9 2.8E-07 7E-12 69.3 15.7 138 58-197 16-154 (218)
146 COG4160 ArtM ABC-type arginine 98.9 6.2E-08 1.6E-12 74.0 11.6 133 56-190 8-151 (228)
147 COG4160 ArtM ABC-type arginine 98.8 1.8E-07 4.5E-12 70.7 13.2 128 376-503 10-150 (228)
148 COG4171 SapC ABC-type antimicr 98.8 7.7E-07 2E-11 66.1 16.4 162 65-235 95-258 (296)
149 COG4168 SapB ABC-type antimicr 98.8 5.8E-07 1.5E-11 66.9 15.0 193 61-259 70-302 (321)
150 COG4590 ABC-type uncharacteriz 98.8 2.5E-08 6.4E-13 76.8 7.5 121 461-586 596-727 (733)
151 COG4239 ABC-type uncharacteriz 98.7 5E-05 1.3E-09 52.9 21.2 156 394-556 151-310 (341)
152 COG4239 ABC-type uncharacteriz 98.5 0.00012 3E-09 50.2 19.3 182 64-255 139-323 (341)
153 COG4590 ABC-type uncharacteriz 98.4 1.2E-07 3.1E-12 71.9 2.2 173 58-235 425-679 (733)
154 TIGR02789 nickel_nikB nickel A 98.4 0.00013 3.4E-09 49.9 17.7 206 372-584 88-306 (315)
155 COG4171 SapC ABC-type antimicr 98.3 9.4E-05 2.4E-09 50.9 14.6 160 385-549 97-258 (296)
156 COG4168 SapB ABC-type antimicr 98.2 4.8E-05 1.2E-09 53.1 11.7 184 383-572 74-301 (321)
157 COG4597 BatB ABC-type amino ac 98.0 0.00017 4.4E-09 49.0 11.6 79 456-534 273-351 (397)
158 COG4597 BatB ABC-type amino ac 98.0 0.0015 3.7E-08 42.3 17.0 135 61-195 89-326 (397)
159 COG4174 ABC-type uncharacteriz 97.5 0.00032 8.1E-09 47.1 6.5 177 390-572 139-346 (364)
160 COG4174 ABC-type uncharacteriz 96.9 0.0094 2.4E-07 36.4 8.6 183 67-255 134-343 (364)
161 TIGR01726 HEQRo_perm_3TM amino 96.4 0.063 1.6E-06 30.4 11.9 89 58-148 2-91 (99)
162 COG0390 ABC-type uncharacteriz 76.6 3.7 9.6E-05 17.5 12.8 32 474-505 151-182 (256)
163 PRK11176 lipid transporter ATP 64.8 6.6 0.00017 15.8 11.9 15 476-490 446-460 (581)
164 pfam02954 HTH_8 Bacterial regu 58.3 8.5 0.00022 15.0 3.2 30 468-497 10-39 (42)
165 COG2177 FtsX Cell division pro 51.1 11 0.00028 14.2 12.8 55 464-527 185-239 (297)
166 TIGR00801 ncs2 uracil-xanthine 47.6 12 0.00031 13.8 3.2 19 424-442 382-400 (480)
167 PRK01658 holin-like protein; V 46.6 13 0.00032 13.7 6.9 45 542-586 78-122 (122)
168 COG3763 Uncharacterized protei 43.4 14 0.00036 13.3 3.8 25 68-92 2-26 (71)
169 COG1380 Putative effector of m 41.4 15 0.00039 13.1 6.5 35 550-584 87-121 (128)
170 TIGR01102 yscR type III secret 39.6 16 0.00041 12.9 1.9 15 427-441 182-196 (209)
171 CHL00118 atpG ATP synthase CF0 37.9 17 0.00043 12.8 4.8 17 249-265 33-49 (156)
172 TIGR01113 mtrE tetrahydrometha 37.5 17 0.00044 12.7 3.0 30 557-586 267-296 (298)
173 PRK04125 murein hydrolase regu 35.1 19 0.00048 12.5 6.5 10 159-168 51-60 (141)
174 pfam11120 DUF2636 Protein of u 29.2 23 0.00059 11.8 4.6 37 72-108 6-43 (62)
175 PRK06231 F0F1 ATP synthase sub 27.7 25 0.00063 11.6 7.5 34 235-268 45-78 (201)
176 PRK00972 tetrahydromethanopter 23.2 29 0.00075 11.0 3.8 28 559-586 262-289 (293)
177 COG4768 Uncharacterized protei 23.1 29 0.00075 11.0 4.9 18 156-173 24-41 (139)
178 PRK01844 hypothetical protein; 21.8 31 0.0008 10.9 3.7 21 72-92 6-26 (72)
179 PRK13743 conjugal transfer pro 20.7 33 0.00084 10.7 7.5 28 62-89 78-105 (140)
180 TIGR01478 STEVOR variant surfa 20.5 33 0.00085 10.7 9.1 25 238-262 274-298 (315)
No 1
>COG4986 ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=0 Score=430.22 Aligned_cols=518 Identities=37% Similarity=0.584 Sum_probs=443.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 40689999999999999999999999999999971502678999999999743289999999999840145542104799
Q gi|255764497|r 58 VHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVIGAELA 137 (587)
Q Consensus 58 ~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~~~~~~~~ 137 (587)
...++.+.+.|..|++.+..++.+.|..+|+++.++++.++...|.++++|++|.+.+.|+.+..|....++ .+|.|.+
T Consensus 4 v~~i~la~LaT~gRm~~ai~iSi~~~~~lAy~A~Ksk~~E~i~ip~ldVlqSVPVlgFfpi~l~~Fv~lfpG-~lGvElA 82 (523)
T COG4986 4 VLLIPLALLATAGRMLLAILISILTGWFLAYAAIKSKRFENIYIPVLDVLQSVPVLGFFPIVLIFFVYLFPG-PLGVELA 82 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHCCC-CHHHHHH
T ss_conf 389999999999999999999999999999999852056761304998874085120105355444343475-0038999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999998535999999999972998999999962888201236555262157899999999999989989999973544
Q gi|255764497|r 138 AIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGD 217 (587)
Q Consensus 138 ~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~~~ 217 (587)
++|.++++..|+|.+..++++|++|+|++|+|++++.|.|++++|+++|.++|++.+++..++..+|....+.|.+.+|.
T Consensus 83 a~FlvFTs~aWNi~fs~YQsFkTvP~dl~Eva~~yrls~~~r~~rlyIPfa~Pgi~~Nl~~S~s~g~FfItaSEvitvG~ 162 (523)
T COG4986 83 ADFLVFTSVAWNIWFSEYQSFKTVPSDLLEVARNYRLSFLLRMARLYIPFAMPGIAANLMPSMSDGFFFITASEVITVGI 162 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHCCHHHCCCEEEEEEEEEEEECC
T ss_conf 99999999999999999998723878999999872658999878705431125679846830228389999767899635
Q ss_pred CCHHHHHHHHHHH--HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 4203678899999--98631132569999999999999999999989875444321222100112102456555778998
Q gi|255764497|r 218 TVIPLPGIGSYIA--LAIKEQDLLAILYAMLTMLGVIFLYDQLLFRPMIVWSNKFRLERTTGIYPADSWVLYLFRKTNFL 295 (587)
Q Consensus 218 ~~~~~~g~g~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (587)
+++...|+|.++. .+.++.+......+++.+...++..|+..+++...++.+++.+...+++.+.++......++...
T Consensus 163 ~t~~lfGIGS~l~~~~a~~~~~~~~ig~ai~A~~i~il~y~l~~F~~~~V~k~~~~~d~~~~rr~~~sw~~~~~~~s~~~ 242 (523)
T COG4986 163 HTYRLFGIGSLLDELLAIGQYNLAYIGLAILAMAIGILLYDLRRFRPYVVSKYTFDTDAPISRRGRLSWKYDTRLRSVIA 242 (523)
T ss_pred EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCHHHHCCCCCEEHHHHHHHHHH
T ss_conf 04770463889998874001788999999999999999999997534010368765313254314641003589999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 88887888999999999998766565420002344554432101223135899877888999998754321000000000
Q gi|255764497|r 296 RFIGYSSWNFFSPLSNNVKKLCRTLGVIRFHFPENFLQLCSNQRVSYMLDIFWFCVVCGVAIGIAWQSIGYIVNHFTYQD 375 (587)
Q Consensus 296 ~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (587)
.. ++........+..........+..................+.......+....+.......... ..+
T Consensus 243 ~~----------~l~rla~~~~~~~~~r~~~~~~~~~~~~~~r~~~~~ig~l~~~llv~~A~~~i~~v~~slw~~l-~~~ 311 (523)
T COG4986 243 KN----------PLSRLAGLYRRRLLSRAEEVFEETRSGKISRYRSVAIGRLILGLLVYSAPASISSVPESLWGAL-VSE 311 (523)
T ss_pred HC----------CHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_conf 36----------1266677888775047510030102578862113202478888987741477876689999999-712
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 68899999999999999999973100001124543667899985446677544469999999998315566504799999
Q gi|255764497|r 376 VLYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRPHISSKIQPFAQLLAAFPANVFFPLVVSCVSYYHLNPNLWLSLL 455 (587)
Q Consensus 376 ~~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (587)
........+.++.|++.-..++.++++++|+..+.+++.++...|..+.+.+.|+..+.|+.....-....+++....-+
T Consensus 312 ~~~v~~~~l~~~lRV~vilals~~i~i~lGy~i~~~p~~e~i~~P~~Q~LaafPa~~~FPl~~aa~~~~i~~~ei~l~pL 391 (523)
T COG4986 312 TPAVLLYLLYDYLRVVVILALSFLISIFLGYSIALRPRVEGIGQPLIQFLAAFPAPIYFPLLFAAIKTFILTPEIWLSPL 391 (523)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 52899987889999999999999999986574031511655412799998718923788899999999860745777467
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999999999999739989999999749887899899985745778999999999999999999998505564422
Q gi|255764497|r 456 MIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGHIHLR 535 (587)
Q Consensus 456 ~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~~~~~~ 535 (587)
.++++++|++.|+.+|.+++|.|+.|++|+++.+.|..+|+|.+|...|++++|+.++.+.+||+.+++|+...|++...
T Consensus 392 ~~~gT~~Yi~~n~iaG~ka~P~e~~e~akny~l~~w~k~r~iilP~tFPYlitG~~tt~ggaWna~iV~Ey~s~g~~~~v 471 (523)
T COG4986 392 GFIGTFYYIFYNVIAGAKALPVEYFEAAKNYNLGGWAKWRRIILPGTFPYLITGLSTTIGGAWNALIVGEYWSWGHTLLV 471 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHEEEECCCCCHHHH
T ss_conf 77667899999999876527789999999708355998888753642299987477530463440020220026742665
Q ss_pred CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 3783799999997349798999999999999999999721578999876339
Q gi|255764497|r 536 TTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFLWHPLYLYGTRCLRL 587 (587)
Q Consensus 536 ~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~r~~~ 587 (587)
.+|||.+|+++.+.||++....++.+++++++..|+++|||+++.++||+|+
T Consensus 472 ~~GlgkyIa~aT~aGd~pr~~~g~~im~i~Vvv~n~~~wrRl~d~A~kr~~~ 523 (523)
T COG4986 472 AHGLGKYIAVATAAGDIPRALWGSFIMGIVVVVYNILFWRRLMDLARKRYVA 523 (523)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 6327989999985688306888656550455575799999999999987229
No 2
>TIGR03262 PhnU2 putative 2-aminoethylphosphonate ABC transport system, permease protein.
Probab=100.00 E-value=0 Score=380.93 Aligned_cols=523 Identities=11% Similarity=-0.014 Sum_probs=364.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11168888999999999999999999986410233135203668707406899999999999999999999999999999
Q gi|255764497|r 11 ISRRIFPNIFDLLAFVLVIGIINILLHGIQETTVPRDIVDIVPITLDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLA 90 (587)
Q Consensus 11 ~~rr~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~ 90 (587)
.+|-..-........+++++........+...++.+...+++...+++.++++.+.||+..++.++.+++++|+++||+.
T Consensus 2 ~~r~~l~~~~l~l~~~~~~Pl~~l~~~sf~~~~g~~~~l~~~~~~l~~~~~~~~l~nTl~l~~~~~~~~~~lg~~~A~~~ 81 (546)
T TIGR03262 2 IARLLLAGMILALLLFLLLPLLALLTKSVYDSDGDFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYAL 81 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 37899999999999999999999999996489999655999999978968999999999999999999999999999999
Q ss_pred HHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 7150267-89999999997432899999999998401455------4210479999999998535999999999972998
Q gi|255764497|r 91 AKSRRLG-MVLVPILDIMQSIPILGFLTFTVVYFMNLYPG------KVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPR 163 (587)
Q Consensus 91 ~~~~~~~-~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~------~~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~ 163 (587)
+|++.++ +.++..+.++..+|+++.+..++.+++..+.. ..+++..+.++++.++.+|++++.+.++++++|+
T Consensus 82 ~r~~~~gr~~~~~~~~lPl~~P~~v~a~~~~~l~~~~G~~~~~l~~~~iy~~~gii~~~~~~~~P~~~l~~~~al~~~d~ 161 (546)
T TIGR03262 82 TRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGLLGGFSIYGFWGIVIGEVFYTFPHALMILVTALSLADG 161 (546)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 80556469999999999999999999999999983163789998637154799999999999999999999999971998
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 99999996288820123655526215789999999999998998999997354442036788999999863113256999
Q gi|255764497|r 164 DLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLAILY 243 (587)
Q Consensus 164 ~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~~~~~~~~~~ 243 (587)
++|||||++|+|+||+|+||++|+++|++.+|..++|..+++||++|.++|++.+ .-..++..+. .. ..|.+...+
T Consensus 162 ~l~eaA~~lGa~~~~~f~~i~lPl~~P~i~~~~lLvf~~~l~~Fg~p~ilG~~~~-tltt~Iy~~~-~~--~~d~~~aa~ 237 (546)
T TIGR03262 162 RLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGGDYN-VLATDIYKQV-IG--QQNFPMGAV 237 (546)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHH-HC--CCCHHHHHH
T ss_conf 9999998729998899999447865799999999999999753325888438711-1279999999-62--788689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999898754443212221001121024565557789988888788899999999999876656542
Q gi|255764497|r 244 AMLTMLGVIFLYDQLLFRPMIVWSNKFRLERTTGIYPADSWVLYLFRKTNFLRFIGYSSWNFFSPLSNNVKKLCRTLGVI 323 (587)
Q Consensus 244 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~ 323 (587)
....+..++... ....+...++..... .++..+........+.................+...............
T Consensus 238 ls~~ll~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 312 (546)
T TIGR03262 238 VGVLLLLPALLA-FGIDRAIQRRQRAQL----SSRSVPYQPKPNRVRDAACLVYCAIISAALLAVVGMAVYASLVKFWPY 312 (546)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHC----CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999-999999963135303----677776566720389999999999999999999999999999997312
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 00023445544321012231358998778889999987543210000000006889999999999999999997310000
Q gi|255764497|r 324 RFHFPENFLQLCSNQRVSYMLDIFWFCVVCGVAIGIAWQSIGYIVNHFTYQDVLYVIWLGCITMFRVVVLIIIASIIWIP 403 (587)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~tl~~~~~~~~~a~~~~~~ 403 (587)
.... ... ...........+.+..+|+.....+..++..++.+
T Consensus 313 ~~~~--------------------------------tl~------~~~~~~~~~~~~~a~~nSl~la~~aa~i~~~l~~~ 354 (546)
T TIGR03262 313 NLSL--------------------------------TLK------HYNFDLMDGGGWEAYKNSLRLAATTALIGTILVFG 354 (546)
T ss_pred CCCC--------------------------------CHH------HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3431--------------------------------066------56787503568999999999999999999999999
Q ss_pred CCHHHHHCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 112454366---78999854466775444699999999983155------665047999999999999999999999973
Q gi|255764497|r 404 VGIWIGFRP---HISSKIQPFAQLLAAFPANVFFPLVVSCVSYY------HLNPNLWLSLLMIFGTQWYILFNVIAGASA 474 (587)
Q Consensus 404 ~~~~~~~~~---~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~ 474 (587)
.++...+.+ +.++.++.......++|..+.....+..|... ..++.+..++.+.+..+|+..+++.++++|
T Consensus 355 ~ay~i~r~r~~~~~~~~l~~l~~lp~aiPgiVlalg~i~~f~~~~~~l~~LygT~~iLilay~vr~lp~~~~~i~a~l~q 434 (546)
T TIGR03262 355 GAYLIEKTRGFGLLRGVLRFLAILPMAVPGLVLGLGYIFFFNAPTNPLNGLYGTMALLVLCTVVHFYTVSHLTAVTALKQ 434 (546)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999982141267999999998535168999999999998522203678888999999999999999989999999874
Q ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHH
Q ss_conf 99899999997498878998999857457789999999999999999999985055644223783799999997349798
Q gi|255764497|r 475 FPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGHIHLRTTGLGAYIAESTEKGSFPE 554 (587)
Q Consensus 475 i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~~~~~~~~GlG~~i~~~~~~~~~~~ 554 (587)
+|+|+||||+++|++++++++||++|+++|++++|..+.|..+++|+.+..++.++++ +.++.+|++..+.++++.
T Consensus 435 I~~~leeAA~~lGas~~~~~~rI~lPLl~p~ilag~~lvFi~~m~El~~tllL~~~~~----~tl~~~i~~~~~~g~~~~ 510 (546)
T TIGR03262 435 IDSEFEAVSASLKVPFYKTFLRVTLPVCLPAILDIARYLFVNSMTTVSAVVFLYSPDT----KLASVAILNMDDAGDIAP 510 (546)
T ss_pred CCCHHHHHHHHCCCCHHHHHHHEHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCC----EEHHHHHHHHHHCCCHHH
T ss_conf 8950999998759796667253207802899999999999999987687878739998----029999999865877588
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999997215789998763
Q gi|255764497|r 555 VVLGVLIMCCFVLALNRFLWHPLYLYGTRCL 585 (587)
Q Consensus 555 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~r~ 585 (587)
..+..+++.++......++ ..+.|+-+||.
T Consensus 511 Aaa~s~ilvli~~i~~~l~-~~~~rr~~~r~ 540 (546)
T TIGR03262 511 AAAMATLIVLTSAVAKLLF-ALASRRLLRRT 540 (546)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHCCCC
T ss_conf 9999999999999999999-99998844687
No 3
>COG1178 ThiP ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=0 Score=368.88 Aligned_cols=469 Identities=16% Similarity=0.082 Sum_probs=341.6
Q ss_pred CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 2036687074068999999999999999999999999999997150267-899999999974328999999999984014
Q gi|255764497|r 49 VDIVPITLDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLG-MVLVPILDIMQSIPILGFLTFTVVYFMNLY 127 (587)
Q Consensus 49 ~~~~~~~~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~~-~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~ 127 (587)
......+..+..+++.+.||+..++.++++++++|+++|++..|+++++ ++++..+.++..+|+++.+..++.+||..+
T Consensus 42 ~~~~~~~l~~~~~~~~l~nTl~la~~~~~ls~~lG~~~A~l~~r~~fpGr~~l~~l~~lPl~iP~~V~a~~~~~l~G~~G 121 (540)
T COG1178 42 FDALAAVLSDPYLWRVLANTLILAVLVTLLSVVLGIPLAWLLSRYDFPGRRLLRWLLALPLVIPPFVVALAWISLFGPSG 121 (540)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 45799996123899999999999999999999999999999998627717999999999988879999999999976763
Q ss_pred C---------CC-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5---------54-2-10479999999998535999999999972998999999962888201236555262157899999
Q gi|255764497|r 128 P---------GK-V-IGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNM 196 (587)
Q Consensus 128 ~---------~~-~-~~~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~ 196 (587)
+ .+ . +++..++++++....+|++++.+.++++++|+++||+||++|+++||.||+|++|+++|++.++.
T Consensus 122 ~~~~l~~~~G~~~~~iyg~~Giil~~~~~~~P~~~l~~~~al~~i~~~~~EaAr~LGa~~~~~F~~V~lPllrPai~~~~ 201 (540)
T COG1178 122 PLAALLELLGFESPSIYGLGGILLALVFFNYPLAYLLVLAALETIPPSLEEAARTLGASRWQVFRKVTLPLLRPAIAAGA 201 (540)
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 49999987446876646689999999999825999999999983894699999875998322888867887778999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999998998999997354442036788999999863113256999999999999999999998987544432122210
Q gi|255764497|r 197 MMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQLLFRPMIVWSNKFRLERTT 276 (587)
Q Consensus 197 ~l~~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (587)
.++|+.++.||++++.+|++ ...-...+..++ ...++.+.+...+..+.....+.+ ...++..+. |.+.....
T Consensus 202 ~Lvf~~~l~dFg~p~~LG~~-~~Tl~t~IY~~~-~~~~~~~~Aa~la~lll~~~~~ll---~~~~~~~~~--~~~~~~~~ 274 (540)
T COG1178 202 LLVFMLCLADFGTPLILGGG-YTTLETAIYQAI-MSSFDLARAALLALLLLLITAALL---LLERRLRRA--KQKSTLSG 274 (540)
T ss_pred HHHHHHHHHHHHHHHHHCCC-CCEEHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHCC--CCCEEECC
T ss_conf 99999999864469997698-733299999999-845882569999999999999999---999998503--66566437
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 01121024565557789988888788899999999999876656542000234455443210122313589987788899
Q gi|255764497|r 277 GIYPADSWVLYLFRKTNFLRFIGYSSWNFFSPLSNNVKKLCRTLGVIRFHFPENFLQLCSNQRVSYMLDIFWFCVVCGVA 356 (587)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (587)
...+.+ ......++................|............
T Consensus 275 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pl~~i~~~~~~~~------------------------------------ 317 (540)
T COG1178 275 KGSRPK-QRLGRLRRLLGAALIVLLLFLILLPLLAVVLPSFVLN------------------------------------ 317 (540)
T ss_pred CCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------------------------
T ss_conf 777643-3444113679999999999999999999999999842------------------------------------
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999875432100000000068899999999999999999973100001124543667-8999854466775444699999
Q gi|255764497|r 357 IGIAWQSIGYIVNHFTYQDVLYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRPH-ISSKIQPFAQLLAAFPANVFFP 435 (587)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ip~~~~~~ 435 (587)
|... ..........+.+..+|+.....+..++..++++.++...+.+. ..+.++.......++|+.+...
T Consensus 318 ----~~~~-----~~~~~~~~~~~~a~~nSl~~a~~aa~l~~~~~l~~a~~~~r~~~~~~~~~~~l~~l~~avPG~Vla~ 388 (540)
T COG1178 318 ----WGRP-----LSLVLASPQFWQALLNSLLLALAAALLAVVLALLLAYAVRRLRSRLSRLLERLSMLPLAVPGVVLAL 388 (540)
T ss_pred ----CCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf ----3521-----2136657889999999999999999999999999999999732348899999988786336999999
Q ss_pred HHHHHHCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999983155665------04799999999999999999999997399899999997498878998999857457789999
Q gi|255764497|r 436 LVVSCVSYYHLN------PNLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTG 509 (587)
Q Consensus 436 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g 509 (587)
..+..|...... +....++.+.+...|+..++..++++|+|+++||||+++|+++||++|||++|+++|++.+|
T Consensus 389 g~l~~~~~~~~~~~~~~~t~~ilv~a~~~~~~p~a~r~~~a~l~qi~~~leeaa~sLG~~~~~~~~~I~lPll~p~l~~a 468 (540)
T COG1178 389 GLLLLFRAPDGLLYQPLYTLLILVLAYALRFLPFAVRSLRAALRQIDPSLEEAARSLGASGLRRFRRITLPLLRPGLLAA 468 (540)
T ss_pred HHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999851220000305689999999999998899999999998779749999988599787798998787305889999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999998505564422378379999999734979899999999999999999972
Q gi|255764497|r 510 AITACGGAWNASIVSEVASWGHIHLRTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFLW 574 (587)
Q Consensus 510 ~~~a~~~a~~~~~~ae~~~~~~~~~~~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 574 (587)
..+.|..+++++.+..+++.+++ +.++.++++..++++++...+...++.++.++...++.
T Consensus 469 ~~l~F~~s~~Elsat~lL~~~~~----~TL~~~iy~~~~~~~~~~Aaa~a~il~~~~~~~~~~~~ 529 (540)
T COG1178 469 AALVFALSIGELSATLLLGSPGT----RTLTVYIYNLLSDGRYGDAAALALILLVVSLLLFLLLD 529 (540)
T ss_pred HHHHHHHHHHHHCEEEEECCCCC----EEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999755376878638996----10999999980361168889999999999999999999
No 4
>PRK09433 thiP thiamine transporter membrane protein; Reviewed
Probab=100.00 E-value=9.8e-45 Score=340.89 Aligned_cols=464 Identities=13% Similarity=0.008 Sum_probs=324.6
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 36687074068999999999999999999999999999997150267-89999999997432899999999998401455
Q gi|255764497|r 51 IVPITLDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLG-MVLVPILDIMQSIPILGFLTFTVVYFMNLYPG 129 (587)
Q Consensus 51 ~~~~~~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~~-~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~ 129 (587)
+......+..+|+.+.||+..++.++++|+++|+|+|++.+|+++++ +.++..+.++..+|+++.+..++..+|..+..
T Consensus 42 ~~~~~~~d~~~~~~~~~t~~~a~~st~ls~~lg~~~A~~l~r~~f~gr~~l~~l~~lp~~~P~~v~a~~~~~~~g~~G~l 121 (536)
T PRK09433 42 DWSAVWQDSYLWHVVRFSFWQAFLSALLSVLLAIPLARALYRRRFPGRGLLLRLCAMTLVLPVLVAVFGLLSVYGRSGWL 121 (536)
T ss_pred CHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 79999568889999999999999999999999999999999558734999999999998769999999999998216449
Q ss_pred ------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ------------42104799999999985359999999999729989999999628882012365552621578999999
Q gi|255764497|r 130 ------------KVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMM 197 (587)
Q Consensus 130 ------------~~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~ 197 (587)
..+++..+++.++.+.++|++++..+++++++|+++||+|+++|+|+||.||||++|+.+|++.++..
T Consensus 122 ~~~l~~~g~~~~~~iyg~~gil~a~~~~~~P~~~~~~~~~l~~i~~~~~e~A~~LG~~~~~~f~~v~lP~~~pai~~~~~ 201 (536)
T PRK09433 122 ASLLQSLGLEWPFSIYGLQGILLAHVFFNLPLATRLLLQSLESIPSEQRQLAAQLGMRGWQFFRLVEWPWLRRQLPPVAA 201 (536)
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999828877864012999999999999999999999999819999999998759898688886348988788999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999899899999735444203678899999986-3113256999999999999999999998987544432122210
Q gi|255764497|r 198 MSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAI-KEQDLLAILYAMLTMLGVIFLYDQLLFRPMIVWSNKFRLERTT 276 (587)
Q Consensus 198 l~~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (587)
++|+.|+.+|+++..+|++....+.+ ..+.++. .+.|.+.+.......++++..+... .++..+..+. . ..
T Consensus 202 LVF~~~~~sF~~vl~LGGgp~~~Tle---v~IYq~~~~~~D~~~Aa~La~i~l~i~~~l~~l-~~~~~~~~~~---~-~~ 273 (536)
T PRK09433 202 LIFMLCFTSFATVLTLGGGPKATTIE---LAIYQALSFDFDLARAALLALLQLVLCLLLVLL-SQRLSKAIAV---G-ST 273 (536)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCC---C-CC
T ss_conf 99999999888999955886403689---999999986479999999999999999999999-9998224200---2-46
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 01121024565557789988888788899999999999876656542000234455443210122313589987788899
Q gi|255764497|r 277 GIYPADSWVLYLFRKTNFLRFIGYSSWNFFSPLSNNVKKLCRTLGVIRFHFPENFLQLCSNQRVSYMLDIFWFCVVCGVA 356 (587)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (587)
.....+........+................|+......... .
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~vllPl~~vv~~~l~------~------------------------------- 316 (536)
T PRK09433 274 LDRIWRDPKDSGWSRLWDGLLIVLALLLLLLPLLAVVVSGLN------S------------------------------- 316 (536)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H-------------------------------
T ss_conf 677666766331789999999999999999999999999998------7-------------------------------
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH----HHC-HHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998754321000000000688999999999999999999731000011245----436-67899985446677544469
Q gi|255764497|r 357 IGIAWQSIGYIVNHFTYQDVLYVIWLGCITMFRVVVLIIIASIIWIPVGIWI----GFR-PHISSKIQPFAQLLAAFPAN 431 (587)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~ip~~ 431 (587)
. ..........+.+..+|+..+..+..+++.+++++++.. .+. ++..+.++........+|..
T Consensus 317 -----~-------~~~~~~~~~~~~a~~nSl~iA~~aa~la~~lal~la~~~~~~~~r~~~~~~~~l~~~~~lplaiPgi 384 (536)
T PRK09433 317 -----Q-------LPEVLAQPALWQALWTSLRIALLAALLAVLLAMALLLSSRELRLRQKALAAQALELSGMLILAMPGL 384 (536)
T ss_pred -----H-------HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHH
T ss_conf -----5-------5776253889999999999999999999999999999999999850106889999999988733299
Q ss_pred HHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999831556---650479999999999999999999999739989999999749887899899985745778999
Q gi|255764497|r 432 VFFPLVVSCVSYYH---LNPNLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVT 508 (587)
Q Consensus 432 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~ 508 (587)
+......+.+.... ....+..+....+..+||.++...++++|+|+++||+|+++|+++|++||||++|+++|++++
T Consensus 385 Vlg~Gl~ll~~~~~~~~~~~~~ivil~~~l~~lP~a~r~l~~~l~~i~~~le~aA~sLGas~~~~f~~I~lPll~p~i~~ 464 (536)
T PRK09433 385 VLATGLFLLLRNFTDLPQSALGIVILVNALMALPYALRVLEPPMRDIAARYGRLCQSLGIRGWSRLRLVEWRALRRPLAQ 464 (536)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999986202456889999999999999999999999999970175999998869998789698539830999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999985055644223783799999997349798999999999999999999721
Q gi|255764497|r 509 GAITACGGAWNASIVSEVASWGHIHLRTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFLWH 575 (587)
Q Consensus 509 g~~~a~~~a~~~~~~ae~~~~~~~~~~~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 575 (587)
|+.++|..++++..+.-+++.++. +.+..+|++..++++++...+..+++.++....-.+++|
T Consensus 465 a~~l~F~~smgEl~a~~ll~~~~~----~TLp~~iy~~~~~~~~~~Aa~~allL~ll~~~~f~l~er 527 (536)
T PRK09433 465 AFAFACALSLGDFGVIALFGSQDF----RTLPYLLYQQLGSYRSQDAAVTALLLLLLCLLLFTLIER 527 (536)
T ss_pred HHHHHHHHHHHHHCHHHEECCCCC----CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999875370213339998----618999999872767688999999999999999999998
No 5
>COG0600 TauC ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-31 Score=245.21 Aligned_cols=194 Identities=24% Similarity=0.419 Sum_probs=177.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 89999999999999999997310000112454366789998544667754446999999999831556650479999999
Q gi|255764497|r 378 YVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRPHISSKIQPFAQLLAAFPANVFFPLVVSCVSYYHLNPNLWLSLLMI 457 (587)
Q Consensus 378 ~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (587)
.++.+...|+.|+..|+.++..+|+++|..++.++..++.++|..+..+.+|++++.|+.++|||.+..+ ++.+.+
T Consensus 58 ~L~~~~~~Sl~rv~~Gf~la~~~gi~lgil~g~~~~~~~~l~P~i~~l~~iP~lA~~Pl~ilwfG~g~~s----~i~i~~ 133 (258)
T COG0600 58 ELFQHLLASLLRVLLGFALAAVLGIPLGILMGLSRLLERLLDPLVQVLRPIPPLALAPLAILWFGIGETS----KIVIAV 133 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH----HHHHHH
T ss_conf 5999999999999999999999999999999857999999969999993177799999999999079611----999999
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999999999999973998999999974988789989998574577899999999999999999999850556442237
Q gi|255764497|r 458 FGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGHIHLRTT 537 (587)
Q Consensus 458 ~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~~~~~~~~ 537 (587)
..++++++.|+.+|+|++|+++.|++|++|+++||.+|||.+|.++|++++|++.+.+.+|.+++++|+++ +++
T Consensus 134 ~~~ffpi~int~~Gvr~v~~~~~~~ar~lgas~~~~l~~v~lP~AlP~i~tgLRia~g~aw~~~VvaE~l~------a~~ 207 (258)
T COG0600 134 LGAFFPILINTLDGVRSVDPDLLELARTLGASRWQILRKVILPAALPYIFTGLRIAIGLAWIGLVVAELLG------ASS 207 (258)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCC
T ss_conf 99999999999999871899999999980989777877620530078999999999999999999999970------566
Q ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 837999999973497989999999999999999997215789998
Q gi|255764497|r 538 GLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFLWHPLYLYGT 582 (587)
Q Consensus 538 GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 582 (587)
|+|++|.+++++.|++.+++++++++++++++|.++ +.++|+..
T Consensus 208 GLG~~i~~a~~~~~~~~v~a~i~~i~~lgll~d~~v-~~~er~~~ 251 (258)
T COG0600 208 GLGYLILDARNNLQTDLVFAAILVIALLGLLLDRLV-RLLERRLL 251 (258)
T ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_conf 687999999985167899999999999999999999-99999985
No 6
>COG0600 TauC ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.6e-30 Score=233.44 Aligned_cols=214 Identities=18% Similarity=0.261 Sum_probs=192.8
Q ss_pred HHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 41023313520366870740689999999999999999999999999999971502678999999999743289999999
Q gi|255764497|r 40 QETTVPRDIVDIVPITLDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLGMVLVPILDIMQSIPILGFLTFT 119 (587)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~~~~~~~~l~~~~~iP~~~~~~~~ 119 (587)
...+.|............++++++|+..|+.+++.++.++.++|+++|+++++++..++.++|.++++|++|+++++|+.
T Consensus 38 ~~LP~P~~V~~~~~~~~~~g~L~~~~~~Sl~rv~~Gf~la~~~gi~lgil~g~~~~~~~~l~P~i~~l~~iP~lA~~Pl~ 117 (258)
T COG0600 38 FILPSPSAVLAALVELLASGELFQHLLASLLRVLLGFALAAVLGIPLGILMGLSRLLERLLDPLVQVLRPIPPLALAPLA 117 (258)
T ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 77899899999999882375599999999999999999999999999999985799999996999999317779999999
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99984014554210479999999998535999999999972998999999962888201236555262157899999999
Q gi|255764497|r 120 VVYFMNLYPGKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMS 199 (587)
Q Consensus 120 ~~~f~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~ 199 (587)
+.|||.+. .+++....+..++|++.|+++|+|++|+++.|++|++|+|+||.|+||.+|.++|++++|++++
T Consensus 118 ilwfG~g~--------~s~i~i~~~~~ffpi~int~~Gvr~v~~~~~~~ar~lgas~~~~l~~v~lP~AlP~i~tgLRia 189 (258)
T COG0600 118 ILWFGIGE--------TSKIVIAVLGAFFPILINTLDGVRSVDPDLLELARTLGASRWQILRKVILPAALPYIFTGLRIA 189 (258)
T ss_pred HHHHHCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99990796--------1199999999999999999999871899999999980989777877620530078999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999989989999973544420367889999998631132569999999999999999999989875444
Q gi|255764497|r 200 MSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQLLFRPMIVWSN 268 (587)
Q Consensus 200 ~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 268 (587)
.+.+|...+++|+++.+. |+|+++.++.+..|.+.++++++.+.++..++|.... ..+++..
T Consensus 190 ~g~aw~~~VvaE~l~a~~------GLG~~i~~a~~~~~~~~v~a~i~~i~~lgll~d~~v~-~~er~~~ 251 (258)
T COG0600 190 IGLAWIGLVVAELLGASS------GLGYLILDARNNLQTDLVFAAILVIALLGLLLDRLVR-LLERRLL 251 (258)
T ss_pred HHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_conf 999999999999970566------6879999999851678999999999999999999999-9999985
No 7
>PRK10160 taurine transporter subunit; Provisional
Probab=100.00 E-value=2e-30 Score=237.16 Aligned_cols=194 Identities=23% Similarity=0.338 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 88999999999999999999731000011245436678999854466775444699999999983155665047999999
Q gi|255764497|r 377 LYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRPHISSKIQPFAQLLAAFPANVFFPLVVSCVSYYHLNPNLWLSLLM 456 (587)
Q Consensus 377 ~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (587)
+.++.+...|+.++..|+.++.++|+++|..+++++..++.++|....++++|..++.|+.++|||.+..+ .++++
T Consensus 74 g~l~~~~~~Tl~r~~~Gf~la~~~Gv~lGil~g~~~~~~~~l~P~l~~l~~iP~ial~Pl~ilwfG~g~~~----~i~vv 149 (275)
T PRK10160 74 ATLWQHLAASLTRIVLALLAAVVIGIPVGIAMGLSPTVRGILDPLIELYRPVPPLAYLPLMVIWFGIGETS----KILLI 149 (275)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC----HHEEE
T ss_conf 54999999999999999999999999999999987999999999999998588999999999853578400----61010
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999999999999997399899999997498878998999857457789999999999999999999985055644223
Q gi|255764497|r 457 IFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGHIHLRT 536 (587)
Q Consensus 457 ~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~~~~~~~ 536 (587)
++.++|++..|+.+|++++|+++.|++|++|+|+||.++||.+|.++|++++|++.+++.+|+.++++|+++ ++
T Consensus 150 ~l~~~fpi~~nt~~Gvr~vd~~l~e~ar~~gas~~q~~~~V~lP~alP~i~~GlRi~~~~a~~~~v~aE~l~------~~ 223 (275)
T PRK10160 150 YLAIFAPVAMSALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAELIA------AT 223 (275)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CC
T ss_conf 287540899999999971899999999982999999999988887899999999999999999999999983------47
Q ss_pred CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7837999999973497989999999999999999997215789998763
Q gi|255764497|r 537 TGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFLWHPLYLYGTRCL 585 (587)
Q Consensus 537 ~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~r~ 585 (587)
+|+|++|.++++..|++.+++++++++++++.+|.++ ++.|||.
T Consensus 224 ~GLG~~I~~a~~~~~~~~~~a~ii~i~llg~~l~~~~-----~~lerrl 267 (275)
T PRK10160 224 RGLGFMVQSAGEFLATDVVLAGIAVIAIIAFLLELGL-----RALQRRL 267 (275)
T ss_pred CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH
T ss_conf 9878999999986378999999999999999999999-----9999891
No 8
>PRK11365 ssuC alkanesulfonate transporter permease subunit; Provisional
Probab=100.00 E-value=1.3e-30 Score=238.63 Aligned_cols=187 Identities=21% Similarity=0.267 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 88999999999999999999731000011245436678999854466775444699999999983155665047999999
Q gi|255764497|r 377 LYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRPHISSKIQPFAQLLAAFPANVFFPLVVSCVSYYHLNPNLWLSLLM 456 (587)
Q Consensus 377 ~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (587)
+.++.+...|+.++..|+.++.++|+++|..+++++..++.++|....++.+|..++.|+.++|||.+.. ..++++
T Consensus 56 g~l~~~~~~Tl~r~~~Gf~l~~~~Gi~lGil~g~~~~~~~~~~P~~~~l~~iP~ia~~Pl~ilwfG~g~~----~~i~~i 131 (263)
T PRK11365 56 GELWQHLAISSWRALIGFSIGGSLGLILGLISGLSRWGERLLDTSIQMLRNVPHLALIPLVILWFGIDES----AKIFLV 131 (263)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHCCCCC----HHHHHH
T ss_conf 4599999999999999999999999999999998699998758599999765799999999999715742----044788
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999999999999997399899999997498878998999857457789999999999999999999985055644223
Q gi|255764497|r 457 IFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGHIHLRT 536 (587)
Q Consensus 457 ~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~~~~~~~ 536 (587)
+..++|+++.|+.+|++++|+++.|++|++|+|+||.++||.+|.+.|++++|++.+++.||++++++|+++ ++
T Consensus 132 ~~~~~~pi~~nt~~Gv~~v~~~~~~~ar~~g~s~~~~l~~V~lP~alP~i~~glria~~~a~~~~v~aE~i~------~~ 205 (263)
T PRK11365 132 ALGTLFPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPSIMVGVRFALGLMWLTLIVAETIS------AN 205 (263)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------CC
T ss_conf 651042889999888754999999999872999999999989800688999999999999999999999984------46
Q ss_pred CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7837999999973497989999999999999999997
Q gi|255764497|r 537 TGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFL 573 (587)
Q Consensus 537 ~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 573 (587)
+|+|++|.++++..|++.+++++++++++++++|.++
T Consensus 206 ~GLG~~i~~a~~~~~~~~v~a~ii~i~llg~~l~~~~ 242 (263)
T PRK11365 206 SGIGYLAMNAREFLQTDVVVVAIILYALLGKLADVSA 242 (263)
T ss_pred CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9888999999987068899999999999999999999
No 9
>PRK11365 ssuC alkanesulfonate transporter permease subunit; Provisional
Probab=100.00 E-value=1.4e-29 Score=231.13 Aligned_cols=240 Identities=17% Similarity=0.219 Sum_probs=202.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1688889999999999999999999----864102331352036687074068999999999999999999999999999
Q gi|255764497|r 13 RRIFPNIFDLLAFVLVIGIINILLH----GIQETTVPRDIVDIVPITLDVHSLPQYASRTTLRMLSAMVISLLFTFVYAT 88 (587)
Q Consensus 13 rr~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~ 88 (587)
||+.-...++.....++..|..... .....+.|............++++++++..|+.+.+.++.++.++|+++|+
T Consensus 6 ~rw~~r~~p~l~~v~ll~~We~~~~~~~v~~~~lP~P~~V~~~~~~l~~~g~l~~~~~~Tl~r~~~Gf~l~~~~Gi~lGi 85 (263)
T PRK11365 6 KKWLLRVAPWFLPVGIVAVWQLASSVGWLSTRILPSPEGVVMAFWTLSASGELWQHLAISSWRALIGFSIGGSLGLILGL 85 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998999999999999999995048986589989999999998548459999999999999999999999999999
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 99715026789999999997432899999999998401455421047999999999853599999999997299899999
Q gi|255764497|r 89 LAAKSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEV 168 (587)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~ea 168 (587)
+++++++.++.+.|.++.++++|+++++|+.+.|||.+ +.++++.+++..+|+++.|+++|++++|+++.|+
T Consensus 86 l~g~~~~~~~~~~P~~~~l~~iP~ia~~Pl~ilwfG~g--------~~~~i~~i~~~~~~pi~~nt~~Gv~~v~~~~~~~ 157 (263)
T PRK11365 86 ISGLSRWGERLLDTSIQMLRNVPHLALIPLVILWFGID--------ESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEM 157 (263)
T ss_pred HHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHCCC--------CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 99986999987585999997657999999999997157--------4204478865104288999988875499999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 99628882012365552621578999999999999899899999735444203678899999986311325699999999
Q gi|255764497|r 169 SRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTM 248 (587)
Q Consensus 169 a~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i 248 (587)
+|++|+|+||.++||.+|.++|.+++|++++++.+|...+++|+++.++ |+|+.+.++.+..|.+..+++++.+
T Consensus 158 ar~~g~s~~~~l~~V~lP~alP~i~~glria~~~a~~~~v~aE~i~~~~------GLG~~i~~a~~~~~~~~v~a~ii~i 231 (263)
T PRK11365 158 ARSYGLSGIPLFIHVILPGALPSIMVGVRFALGLMWLTLIVAETISANS------GIGYLAMNAREFLQTDVVVVAIILY 231 (263)
T ss_pred HHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 9872999999999989800688999999999999999999999984469------8889999999870688999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999998987544
Q gi|255764497|r 249 LGVIFLYDQLLFRPMIVWS 267 (587)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~ 267 (587)
.++..++|... +..+++.
T Consensus 232 ~llg~~l~~~~-~~lerrl 249 (263)
T PRK11365 232 ALLGKLADVSA-QLLERLW 249 (263)
T ss_pred HHHHHHHHHHH-HHHHHHH
T ss_conf 99999999999-9999993
No 10
>PRK10160 taurine transporter subunit; Provisional
Probab=100.00 E-value=2.9e-29 Score=228.77 Aligned_cols=196 Identities=18% Similarity=0.277 Sum_probs=184.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 74068999999999999999999999999999997150267899999999974328999999999984014554210479
Q gi|255764497|r 57 DVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVIGAEL 136 (587)
Q Consensus 57 ~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~~~~~~~ 136 (587)
.++++++|+..|+.+.+.|+.++.++|+++|++++++++.++.+.|.+..++++|++++.|+.+.|||.+ +.
T Consensus 72 ~~g~l~~~~~~Tl~r~~~Gf~la~~~Gv~lGil~g~~~~~~~~l~P~l~~l~~iP~ial~Pl~ilwfG~g--------~~ 143 (275)
T PRK10160 72 MDATLWQHLAASLTRIVLALLAAVVIGIPVGIAMGLSPTVRGILDPLIELYRPVPPLAYLPLMVIWFGIG--------ET 143 (275)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC--------CC
T ss_conf 7754999999999999999999999999999999987999999999999998588999999999853578--------40
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999853599999999997299899999996288820123655526215789999999999998998999997354
Q gi|255764497|r 137 AAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVG 216 (587)
Q Consensus 137 ~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~~ 216 (587)
++++++++..+|+++.++++|++++|+++.|++|++|+|+||.++||.+|.++|.+++|++++++.+|....++|+++.+
T Consensus 144 ~~i~vv~l~~~fpi~~nt~~Gvr~vd~~l~e~ar~~gas~~q~~~~V~lP~alP~i~~GlRi~~~~a~~~~v~aE~l~~~ 223 (275)
T PRK10160 144 SKILLIYLAIFAPVAMSALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAELIAAT 223 (275)
T ss_pred CHHEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 06101028754089999999997189999999998299999999998888789999999999999999999999998347
Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 442036788999999863113256999999999999999999998987544
Q gi|255764497|r 217 DTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQLLFRPMIVWS 267 (587)
Q Consensus 217 ~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 267 (587)
+ |+|+.+.++.+..|.+..+++++.+.++..++|... +..+++.
T Consensus 224 ~------GLG~~I~~a~~~~~~~~~~a~ii~i~llg~~l~~~~-~~lerrl 267 (275)
T PRK10160 224 R------GLGFMVQSAGEFLATDVVLAGIAVIAIIAFLLELGL-RALQRRL 267 (275)
T ss_pred C------CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_conf 9------878999999986378999999999999999999999-9999891
No 11
>TIGR03416 ABC_choXWV_perm choline ABC transporter, permease protein.
Probab=99.97 E-value=4.7e-29 Score=227.27 Aligned_cols=189 Identities=15% Similarity=0.160 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 00688999999999999999999731000011245436678999854466775444699999999983155665047999
Q gi|255764497|r 374 QDVLYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRPHISSKIQPFAQLLAAFPANVFFPLVVSCVSYYHLNPNLWLS 453 (587)
Q Consensus 374 ~~~~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~ 453 (587)
......|.....|+..+..+..++..+|+|+|++++++++.++.+.|..+.+|++|+.++.++.+++||.+..+ .+
T Consensus 79 i~~~G~W~~am~Tlalv~~av~la~~iGiPlGI~~~~s~~~~~~l~pild~mQTiP~fvyLip~i~lfGiG~~~----ai 154 (267)
T TIGR03416 79 IINQGYWEETVETLALVLSATVVCMVIGVPLGIAAAHRPWLYAIMRPVLDLMQTLPTFVYLIPALVLFGLGMVP----GL 154 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHH----HH
T ss_conf 99871589999999999999999999999999999816999999999998743154679999999994887056----99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999999999997399899999997498878998999857457789999999999999999999985055644
Q gi|255764497|r 454 LLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGHIH 533 (587)
Q Consensus 454 ~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~~~~ 533 (587)
+..++.+.||++|++..|+||+|+|+.|||+++|+|+||+++||.+|+++|++++|.+++...++..+++++++|.
T Consensus 155 ia~~iya~~P~ir~T~~Gir~V~~~~iEaa~~~G~s~~q~l~~V~lPlA~P~Il~G~nq~i~~al~mvviaa~IGa---- 230 (267)
T TIGR03416 155 ISTVIFAIPAPIRLTHLGISSVPQELVEAGEAFGATPSQLLWKVELPYAMPQIMAGLTQTIMLSLSMVVIAALVGA---- 230 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_conf 9999999889999999999856768999999839989889799418415899999999999999999999999678----
Q ss_pred CCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2237837999999973497989999999999999999997
Q gi|255764497|r 534 LRTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFL 573 (587)
Q Consensus 534 ~~~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 573 (587)
.|||+.+.++.++.|.+..+.+.+.++++++.+||+|
T Consensus 231 ---~GLG~~v~~~l~~~~~g~~l~~gi~iv~lAiilDRlf 267 (267)
T TIGR03416 231 ---DGLGVPVVRALNTVNIALGFEAGLAIVVLAIVLDRIF 267 (267)
T ss_pred ---CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf ---8536999999863356889999999999999997049
No 12
>PRK10952 glycine betaine transporter membrane protein; Provisional
Probab=99.97 E-value=4.5e-29 Score=227.40 Aligned_cols=197 Identities=21% Similarity=0.254 Sum_probs=183.9
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 70740689999999999999999999999999999971502678999999999743289999999999840145542104
Q gi|255764497|r 55 TLDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVIGA 134 (587)
Q Consensus 55 ~~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~~~~~ 134 (587)
+....++|+..++|+.++..+..+|+++|+|+|++++||++.++.++|+++.+|++|+|+|....+.+||.|
T Consensus 135 ~I~~~G~W~~aM~TLalvlvav~~~~iiGiplGI~~ars~r~~~il~PiLD~mQT~P~FVYLiP~vmlFGiG-------- 206 (354)
T PRK10952 135 AIGAIGAWSQAMVTLALVLTALLFCIVIGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIG-------- 206 (354)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC--------
T ss_conf 999966329999999999999999999999999999746999999999998731130799999999992797--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999999998535999999999972998999999962888201236555262157899999999999989989999973
Q gi|255764497|r 135 ELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIV 214 (587)
Q Consensus 135 ~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g 214 (587)
..+.+++...+..||+.+++..|+|++|+|+.||++++|+++||.++||.+|+++|.|++|..++.+.++...+++.++|
T Consensus 207 ~vpaviAtviyAlpP~iR~T~lGir~Vp~~viEAa~~~G~T~~Q~L~kVeLPlA~P~ImaGvNQtimlaLsMvVIAa~IG 286 (354)
T PRK10952 207 NVPGVVVTIIFALPPIIRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIA 286 (354)
T ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 14599999999735899999999960888899999984999888989833602499999999999999999999999957
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5444203678899999986311325699999999999999999999898754
Q gi|255764497|r 215 VGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQLLFRPMIVW 266 (587)
Q Consensus 215 ~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 266 (587)
.+ |+|..+.++.+..|.+....+.+.++++++++|++.+...+++
T Consensus 287 ag-------GLG~~Vl~gi~~~d~G~gl~aGl~IVlLAIiLDRiTqa~g~~~ 331 (354)
T PRK10952 287 VG-------GLGQMVLRGIGRLDMGLATVGGVGIVILAIILDRLTQAVGRDS 331 (354)
T ss_pred CC-------CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 88-------6618999998622436899999999999999999889856200
No 13
>TIGR03416 ABC_choXWV_perm choline ABC transporter, permease protein.
Probab=99.97 E-value=1e-27 Score=217.64 Aligned_cols=189 Identities=18% Similarity=0.277 Sum_probs=181.7
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 70740689999999999999999999999999999971502678999999999743289999999999840145542104
Q gi|255764497|r 55 TLDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVIGA 134 (587)
Q Consensus 55 ~~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~~~~~ 134 (587)
+....++|+...+|+.+...+..+|.++|+|+|++++|+|+.++.++|+++.+|++|+++|.+..+.+||.|
T Consensus 78 ~i~~~G~W~~am~Tlalv~~av~la~~iGiPlGI~~~~s~~~~~~l~pild~mQTiP~fvyLip~i~lfGiG-------- 149 (267)
T TIGR03416 78 LIINQGYWEETVETLALVLSATVVCMVIGVPLGIAAAHRPWLYAIMRPVLDLMQTLPTFVYLIPALVLFGLG-------- 149 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC--------
T ss_conf 999871589999999999999999999999999999816999999999998743154679999999994887--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999999998535999999999972998999999962888201236555262157899999999999989989999973
Q gi|255764497|r 135 ELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIV 214 (587)
Q Consensus 135 ~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g 214 (587)
+.+.++++..+..||+.+++..|+|++|+|+.|||+++|+|+||+++||.+|+++|.+++|.+++.+.++....+++++|
T Consensus 150 ~~~aiia~~iya~~P~ir~T~~Gir~V~~~~iEaa~~~G~s~~q~l~~V~lPlA~P~Il~G~nq~i~~al~mvviaa~IG 229 (267)
T TIGR03416 150 MVPGLISTVIFAIPAPIRLTHLGISSVPQELVEAGEAFGATPSQLLWKVELPYAMPQIMAGLTQTIMLSLSMVVIAALVG 229 (267)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 05699999999988999999999985676899999983998988979941841589999999999999999999999967
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 54442036788999999863113256999999999999999999
Q gi|255764497|r 215 VGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQL 258 (587)
Q Consensus 215 ~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 258 (587)
.+ |+|+++.++.++.|.+....+.+.++++++.+|++
T Consensus 230 a~-------GLG~~v~~~l~~~~~g~~l~~gi~iv~lAiilDRl 266 (267)
T TIGR03416 230 AD-------GLGVPVVRALNTVNIALGFEAGLAIVVLAIVLDRI 266 (267)
T ss_pred CC-------CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 88-------53699999986335688999999999999999704
No 14
>PRK10971 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.97 E-value=3e-27 Score=214.19 Aligned_cols=260 Identities=15% Similarity=0.056 Sum_probs=200.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0111168888999999999999999999986410-233135203668707406899999999999999999999999999
Q gi|255764497|r 9 PFISRRIFPNIFDLLAFVLVIGIINILLHGIQET-TVPRDIVDIVPITLDVHSLPQYASRTTLRMLSAMVISLLFTFVYA 87 (587)
Q Consensus 9 ~~~~rr~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a 87 (587)
+..+||..|..+......+++..+....+-.... .......++++...+++++++...||+..++.++++++++|++.|
T Consensus 3 ~~~~~~~~~~~~l~l~~~~l~i~~~~l~Pl~~l~~~~~~~~l~ny~~~f~dp~~~~al~nTl~ia~~~t~i~~vlG~~~A 82 (277)
T PRK10971 3 AVSSRRVLPGFTLSLGTSLLFVCLILLLPLSALVMQLSQMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFGLLMA 82 (277)
T ss_pred CCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 62005517662899999999999999999999999981699999999987988999999999999999999999999999
Q ss_pred HHHHHCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999715026-78999999999743289999999999840145---------54210479999999998535999999999
Q gi|255764497|r 88 TLAAKSRRL-GMVLVPILDIMQSIPILGFLTFTVVYFMNLYP---------GKVIGAELAAIFAIFTSQVWNMTFSMYQS 157 (587)
Q Consensus 88 ~~~~~~~~~-~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~---------~~~~~~~~~~i~~~~~~~~~~i~~~~~~~ 157 (587)
|...|++++ ++.++.++.++..+|+++....+...|+..+. .+..+++.+.++++....+|++++...++
T Consensus 83 ~~l~r~~f~gr~~l~~l~~lP~~iP~~V~g~~~~~lf~~~G~~~~~l~~~gi~~~~~~~giii~~~~~~~Pf~~~~~~a~ 162 (277)
T PRK10971 83 WILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGWYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPV 162 (277)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99991588738999999999999899999999999846654266789975964101299999999999989999987899
Q ss_pred HHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 97299899999996288820123655526215789999999999998998999997354442036788999999863113
Q gi|255764497|r 158 LCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIKEQD 237 (587)
Q Consensus 158 l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~~~~ 237 (587)
++++|+++||||+++|||+||+||||++|+++|++.++..++|..++++++++.+++++.. ...+.+..++.+..++.|
T Consensus 163 l~~id~~leEAA~~lGAs~~~~f~~V~lPll~P~i~~g~ll~F~~s~~~f~~~~~l~G~~~-~~t~tl~~~iy~~~~~~d 241 (277)
T PRK10971 163 LEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIAGNIA-WKTEVTSLMIFVRLQEFD 241 (277)
T ss_pred HHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCHHHHHHHHHHHCCC
T ss_conf 9848999999998649986573041039857999999999999999987606750017998-865149999999998768
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 256999999999999999999998987544432
Q gi|255764497|r 238 LLAILYAMLTMLGVIFLYDQLLFRPMIVWSNKF 270 (587)
Q Consensus 238 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 270 (587)
.+.+.+...++.++.+++.... +..+++.+|+
T Consensus 242 ~~~a~Als~ill~~sli~~~~~-~~l~~R~~Rr 273 (277)
T PRK10971 242 YPAASAIASVILAASLLLLFSI-NTLQSRFGRR 273 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_conf 8999999999999999999999-9999999875
No 15
>COG4176 ProW ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]
Probab=99.97 E-value=2.9e-29 Score=228.83 Aligned_cols=196 Identities=22% Similarity=0.268 Sum_probs=184.5
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 70740689999999999999999999999999999971502678999999999743289999999999840145542104
Q gi|255764497|r 55 TLDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVIGA 134 (587)
Q Consensus 55 ~~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~~~~~ 134 (587)
+....++|+.+..|+.+++.++++|.++|+|+|++++|+++.++.++|++|++|++|+++|...++.+||.|.
T Consensus 84 ~I~~~GlW~~tM~TLaLVl~a~~isivIGiPlGI~~ar~~~~~~i~~PiLDlMQTmP~FVYLIPav~lFGlG~------- 156 (290)
T COG4176 84 LIGNLGLWDQTMQTLALVLTATLISIVIGIPLGIWAARSPRVYRIVRPILDLMQTMPTFVYLIPAVMLFGLGN------- 156 (290)
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC-------
T ss_conf 9998150899999999999999999998004899985368899999689999860542799999999907888-------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999999998535999999999972998999999962888201236555262157899999999999989989999973
Q gi|255764497|r 135 ELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIV 214 (587)
Q Consensus 135 ~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g 214 (587)
.+.+++......||+.+.+.-|+|++|+|+.||+++.|+|+||.+|||.+|+++|.+++|..++.+.+++..+++.++|
T Consensus 157 -VPg~iAtvIfA~PP~IRlT~LGIrqVp~eliEA~~AFG~t~~Q~L~kVqLPlA~PtIMaGiNQtIMlALsMVVIAsMIG 235 (290)
T COG4176 157 -VPGLIATVIFAMPPMIRLTNLGIRQVPAELIEAADAFGATPRQKLFKVQLPLALPTIMAGINQTIMLALSMVVIASMIG 235 (290)
T ss_pred -CCEEEEEEEEECCCHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf -7634136565368158776324101789999999970898888978720743077899866799999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 544420367889999998631132569999999999999999999989875
Q gi|255764497|r 215 VGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQLLFRPMIV 265 (587)
Q Consensus 215 ~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 265 (587)
.+ |+|+...++.+..|.+..+.+.+.++++++++|++.+....+
T Consensus 236 a~-------GLG~~Vl~~i~~ldig~g~~aGlaIVilAIiLDRitq~~~~~ 279 (290)
T COG4176 236 AG-------GLGQEVLRGIQRLDIGLGFEAGLAIVILAIILDRLTQAFGRK 279 (290)
T ss_pred CC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 78-------776899999887213777763089999999999998884545
No 16
>TIGR03226 PhnU 2-aminoethylphosphonate ABC transporter, permease protein. This ABC transporter permease (membrane-spanning) component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238).
Probab=99.96 E-value=2e-26 Score=208.14 Aligned_cols=250 Identities=14% Similarity=0.025 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 111688889999999999999999999----8641023313520366870740689999999999999999999999999
Q gi|255764497|r 11 ISRRIFPNIFDLLAFVLVIGIINILLH----GIQETTVPRDIVDIVPITLDVHSLPQYASRTTLRMLSAMVISLLFTFVY 86 (587)
Q Consensus 11 ~~rr~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~ 86 (587)
.++|..|+.+....+..+..+..+... .......+....+++....++.+.++.++||+..++.++.+|+++|+++
T Consensus 36 ~~~~l~p~lll~p~ll~l~~~~~~Pl~~~~~~s~~~~~g~~gl~ny~~~f~~~~~~~al~nTl~~a~~~t~~~lvlG~~l 115 (312)
T TIGR03226 36 PAENLAPALILALAALVLAPLFFWPLALIAELALLGAHGEIGLAAFRHFFASHDFRDALGNTLQIAFAAAAGALLLGSAL 115 (312)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 46631528999999999999999999999999741898986399999997796799999999999999999999999999
Q ss_pred HHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---------------CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99997150267-8999999999743289999999999840145---------------5421047999999999853599
Q gi|255764497|r 87 ATLAAKSRRLG-MVLVPILDIMQSIPILGFLTFTVVYFMNLYP---------------GKVIGAELAAIFAIFTSQVWNM 150 (587)
Q Consensus 87 a~~~~~~~~~~-~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~---------------~~~~~~~~~~i~~~~~~~~~~i 150 (587)
||+..|.++++ +.+..++.++..+|+++....+...|+..+. .+.+++..++++......+|++
T Consensus 116 A~~L~r~~f~g~~~l~~ll~lp~~lP~~v~a~a~~~l~~~~G~ln~~L~~l~gl~~~p~~~l~s~~gVvla~i~~~~Pf~ 195 (312)
T TIGR03226 116 AAILFFIPFPGAELIGRFLDLFIAFPSFLIAFAFIFIYGSAGLLNGALMRAFAFDAPPLDFLFGAGGVILAEITFFTPFV 195 (312)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999623762899999999999988999999999998357707799999628667745777409999999999989999
Q ss_pred HHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 99999999729989999999628882012365552621578999999999999899899999735444203678899999
Q gi|255764497|r 151 TFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIA 230 (587)
Q Consensus 151 ~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~ 230 (587)
++.++.+++++|+++||||+++|||+||+||||++|+++|++++|..++|..++++|+++.++|++... .+..++.
T Consensus 196 ~l~~~a~l~~id~~l~EAA~~lGAs~~~~Fr~VtLPll~P~i~ag~lL~Fi~~~~~F~~~~~lgg~~~~----tl~~~Iy 271 (312)
T TIGR03226 196 MRPLLAAFAQIDKRLLEAASILGAHGLMLAGQVIFPAALPAIAAGGILCFLLTLNEFGILLFIGAAGLI----TLPMAIY 271 (312)
T ss_pred HHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCE----EHHHHHH
T ss_conf 999999999689789999988499988867874278468999999999999999775411344089970----1799999
Q ss_pred H-HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9-8631132569999999999999999999989875
Q gi|255764497|r 231 L-AIKEQDLLAILYAMLTMLGVIFLYDQLLFRPMIV 265 (587)
Q Consensus 231 ~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 265 (587)
+ ...+.|++.+.+...+++++.+.+ ..+.|+.++
T Consensus 272 ~~~~~~~d~~~AaAlavillv~~l~l-~~l~r~~~r 306 (312)
T TIGR03226 272 SKAILDIDLPAAAAGALIMIALSLAL-FALYRLAAR 306 (312)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_conf 99987579899999999999999999-999999987
No 17
>PRK11602 cysW sulfate/thiosulfate transporter permease subunit; Provisional
Probab=99.96 E-value=2e-26 Score=208.27 Aligned_cols=221 Identities=13% Similarity=0.072 Sum_probs=167.3
Q ss_pred CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 203668707406899999999999999999999999999999715026-7899999999974328999999999984014
Q gi|255764497|r 49 VDIVPITLDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRL-GMVLVPILDIMQSIPILGFLTFTVVYFMNLY 127 (587)
Q Consensus 49 ~~~~~~~~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~-~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~ 127 (587)
..+++....+.+.++.++||+..++.++.+++++|+++|++..|.+++ ++.++.++.++..+|+++....+..+++..+
T Consensus 50 l~~~~~~l~dp~~~~al~~Tl~~a~~~~~i~lvlG~~lA~~l~r~~f~gr~~~~~l~~lP~~ip~vV~g~~~~~l~~~~G 129 (291)
T PRK11602 50 LMPVLQNLADPDMLHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLVYLLFYGSNG 129 (291)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 89999998397899999999999999999999999999999992788608999999999886379999999999826443
Q ss_pred CC---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55---------421047999999999853599999999997299899999996288820123655526215789999999
Q gi|255764497|r 128 PG---------KVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMM 198 (587)
Q Consensus 128 ~~---------~~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l 198 (587)
+. +..++..+.+++......|++++.+..+++++|+++||||+++|||+||+||||++|+++|++.+|..+
T Consensus 130 ~l~~~L~~~~~~~~~s~~giil~~v~~~~Pf~~~~~~a~l~~i~~~l~EAA~~lGAs~wq~F~~VtLPll~P~i~~g~iL 209 (291)
T PRK11602 130 PLGGWLDEHNLQLMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVL 209 (291)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78999985583286778999999999999999999999998689589999987699987898986498309999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999998998999997354442036788999999863113256--9999-99999999999999998987544432
Q gi|255764497|r 199 SMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLA--ILYA-MLTMLGVIFLYDQLLFRPMIVWSNKF 270 (587)
Q Consensus 199 ~~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~~~~~~~--~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~ 270 (587)
+|..++++|+++.+++++... ...++-.++....++.+... ..++ ...+..+++.+...+.++.+|+.+|.
T Consensus 210 ~f~~al~~Fg~v~~l~G~~~g-~T~t~~~~i~~~~~~~~~~~a~~~a~~l~~~~~i~l~l~~~lq~R~~r~~~r~ 283 (291)
T PRK11602 210 TNARAIGEFGAVSVVSGSIRG-ETLSLPLQIELLEQDYNTVGSFTAAALLTLMAIITLFLKSMLQWRLENQEKRA 283 (291)
T ss_pred HHHHHHHHCCCHHEEECCCCC-CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999998756804311579988-50106999999998126446999999999999999999999999997078887
No 18
>PRK10683 putrescine transporter subunit: membrane component of ABC superfamily; Provisional
Probab=99.96 E-value=3e-25 Score=199.66 Aligned_cols=239 Identities=15% Similarity=0.123 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC---CCC--------------CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999998641023---313--------------52036687074068999999999999999999999
Q gi|255764497|r 20 FDLLAFVLVIGIINILLHGIQETTV---PRD--------------IVDIVPITLDVHSLPQYASRTTLRMLSAMVISLLF 82 (587)
Q Consensus 20 ~~~~~~~~v~~~~~~~~~~~~~~~~---~~~--------------~~~~~~~~~~~~~l~~~~~~Tl~~~~~~~~~~~~i 82 (587)
..|..+++++..+.....+...... |.. .-+++....++..+++..+||+..++.++++|+++
T Consensus 37 ~~wl~~ff~~P~~~v~~iS~~~~~~~~ppy~~~~~~~~~~~~~~~~l~NY~~lf~d~~y~~a~~nSL~iA~~sT~i~lli 116 (317)
T PRK10683 37 YIWLILLFLLPFLIVFKISLAEMARAIPPYTDLMEWADGQLSITLNLGNFLQLTDDPLYFDAYLQSLQVAAISTICCLLI 116 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCEEEEECHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999998421025899830220356631564448989999769789999999999999999999999
Q ss_pred HHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9999999971502678-9999999997432899999999998401--------------455421047999999999853
Q gi|255764497|r 83 TFVYATLAAKSRRLGM-VLVPILDIMQSIPILGFLTFTVVYFMNL--------------YPGKVIGAELAAIFAIFTSQV 147 (587)
Q Consensus 83 g~~~a~~~~~~~~~~~-~~~~~l~~~~~iP~~~~~~~~~~~f~~~--------------~~~~~~~~~~~~i~~~~~~~~ 147 (587)
|+|+||.++|.+...| .+.-++.++..+|.++-...++..++.. .+...++++.++++.+.....
T Consensus 117 G~P~Ay~iar~~~~~r~~l~~lvilP~~~s~lVr~~aw~~iL~~~G~ln~~L~~lGli~~pl~ll~t~~aViig~v~~~l 196 (317)
T PRK10683 117 GYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKNNGVLNNFLLWLGVIDQPLTILHTNLAVYIGIVYAYL 196 (317)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999938861789999999999706799999999999731434878999960446763225645899999999999
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 59999999999729989999999628882012365552621578999999999999899899999735444203678899
Q gi|255764497|r 148 WNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGS 227 (587)
Q Consensus 148 ~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~g~g~ 227 (587)
|++++..+.+++++|++++|||+++|||+||+||||++|+++|++++|..++|..++++|++|+++|++.+. .++.
T Consensus 197 PfmvL~l~a~L~~id~~L~EAA~~LGAs~~~~F~~VtLPL~~PGIiag~lLvFi~a~g~F~iP~lLGG~~~~----~i~~ 272 (317)
T PRK10683 197 PFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGEFVIPELLGGPDSI----MIGR 272 (317)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC----CHHH
T ss_conf 999999999998589089999987699865540023206218999999999999998887768664299856----2999
Q ss_pred HHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999-8631132569999999999999999999989
Q gi|255764497|r 228 YIAL-AIKEQDLLAILYAMLTMLGVIFLYDQLLFRP 262 (587)
Q Consensus 228 ~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 262 (587)
.+.+ ..++.|.+.+.+...+++++.++......|+
T Consensus 273 ~i~~~f~~~~dwp~aaAlavvLl~i~iv~~~~~~r~ 308 (317)
T PRK10683 273 VLWQEFFNNRDWPVASAVAIIMLLLLIVPIMWFHKH 308 (317)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999874680589999999999999999999999
No 19
>PRK10952 glycine betaine transporter membrane protein; Provisional
Probab=99.96 E-value=7e-26 Score=204.25 Aligned_cols=203 Identities=17% Similarity=0.225 Sum_probs=184.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87543210000000006889999999999999999997310000112454366789998544667754446999999999
Q gi|255764497|r 360 AWQSIGYIVNHFTYQDVLYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRPHISSKIQPFAQLLAAFPANVFFPLVVS 439 (587)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~ 439 (587)
++..................|.....|+..+..++.++.++|+|+|++..++++.++.+.|+.+.+|++|.+++..+.++
T Consensus 122 g~~la~~t~~~l~~I~~~G~W~~aM~TLalvlvav~~~~iiGiplGI~~ars~r~~~il~PiLD~mQT~P~FVYLiP~vm 201 (354)
T PRK10952 122 GVGMGVATLISLIAIGAIGAWSQAMVTLALVLTALLFCIVIGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVM 201 (354)
T ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 47999999999999999663299999999999999999999999999997469999999999987311307999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 83155665047999999999999999999999973998999999974988789989998574577899999999999999
Q gi|255764497|r 440 CVSYYHLNPNLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWN 519 (587)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~ 519 (587)
+|+.+..+ .++..++.++|+++|++..|+||+|+|+.||++++|+++||.++||.+|+++|.|+.|.+.+...+..
T Consensus 202 lFGiG~vp----aviAtviyAlpP~iR~T~lGir~Vp~~viEAa~~~G~T~~Q~L~kVeLPlA~P~ImaGvNQtimlaLs 277 (354)
T PRK10952 202 LFGIGNVP----GVVVTIIFALPPIIRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALS 277 (354)
T ss_pred HHCCCCHH----HHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 92797145----99999999735899999999960888899999984999888989833602499999999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999850556442237837999999973497989999999999999999997
Q gi|255764497|r 520 ASIVSEVASWGHIHLRTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFL 573 (587)
Q Consensus 520 ~~~~ae~~~~~~~~~~~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 573 (587)
.++++.+++.+ |||..++.+.++.|.+..+.+.+.++++.+.+||+=
T Consensus 278 MvVIAa~IGag-------GLG~~Vl~gi~~~d~G~gl~aGl~IVlLAIiLDRiT 324 (354)
T PRK10952 278 MVVIASMIAVG-------GLGQMVLRGIGRLDMGLATVGGVGIVILAIILDRLT 324 (354)
T ss_pred HHHHHHHHCCC-------CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999995788-------661899999862243689999999999999999988
No 20
>PRK10592 putrescine transporter subunit: membrane component of ABC superfamily; Provisional
Probab=99.95 E-value=1.6e-23 Score=187.22 Aligned_cols=262 Identities=11% Similarity=0.060 Sum_probs=175.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01650111168888999999999999999999986410233----13520366870740689999999999999999999
Q gi|255764497|r 5 NILPPFISRRIFPNIFDLLAFVLVIGIINILLHGIQETTVP----RDIVDIVPITLDVHSLPQYASRTTLRMLSAMVISL 80 (587)
Q Consensus 5 ~~~P~~~~rr~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~Tl~~~~~~~~~~~ 80 (587)
|-+|..+.+..... ..+...+++.+.+.....++...... ......+....++.+.++...||+..++.++.+++
T Consensus 2 ~~~~~~r~~W~~vi-~~l~~~fl~~Pi~~iv~~SF~~~~~~~~~~gftl~~y~~lf~~~~~~~a~~~Sl~ia~~~t~i~~ 80 (281)
T PRK10592 2 NNLPVVRSPWRIVI-LLLGFTFLYAPMLMLVIYSFNSSKLVTVWAGWSTRWYGELFRDDAMMSAVGLSLTIAACAATMAA 80 (281)
T ss_pred CCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99975656589999-99999999999999999993698767888987799999997797899999999999999999999
Q ss_pred HHHHHHHHHHHHC-CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999715-026-7899999999974328999999999984014554---2104799999999985359999999
Q gi|255764497|r 81 LFTFVYATLAAKS-RRL-GMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGK---VIGAELAAIFAIFTSQVWNMTFSMY 155 (587)
Q Consensus 81 ~ig~~~a~~~~~~-~~~-~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~---~~~~~~~~i~~~~~~~~~~i~~~~~ 155 (587)
++|.+.||...|. +++ ++.+..++..+..+|+++.+...+..|...+... ...+....+..+.....|+++....
T Consensus 81 ~lG~~~A~~l~r~~~~~g~~~~~~l~~~Pl~vP~iv~gl~l~~~f~~~g~~~g~~~~~~~~~i~i~~~~~~~P~~~~~i~ 160 (281)
T PRK10592 81 ILGTIAAVVMVRFGRFRGSNGFAFMITAPLVMPDVITGLSLLLLFVALGHAIGWPADRGMLTIWLAHVTFCTAYVAVVIS 160 (281)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999805533069999999989986789999999999998463225320023789999999999999999999
Q ss_pred HHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99972998999999962888201236555262157899999999999989989999973544420367889999998631
Q gi|255764497|r 156 QSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIKE 235 (587)
Q Consensus 156 ~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~~ 235 (587)
.+++++|+++||||+++|||+||.|+||++|+++|++++|..++|..++++++++..+++++.. ++..++.+..+.
T Consensus 161 a~l~~id~~leEAA~~LGAs~~~~f~~V~LPli~Pgiiag~il~F~~s~~ef~~~~~l~g~~~~----TLpv~iy~~~~~ 236 (281)
T PRK10592 161 SRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFVSGPGAT----TLPMLVFSSVRM 236 (281)
T ss_pred HHHHHCCHHHHHHHHHCCCCHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC----CHHHHHHHHHHC
T ss_conf 9998589279999988199988883435417115989999999999999877788621089984----569999999871
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1325699999999999999999999898754443212
Q gi|255764497|r 236 QDLLAILYAMLTMLGVIFLYDQLLFRPMIVWSNKFRL 272 (587)
Q Consensus 236 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 272 (587)
.......+...+++++... ..++..++.++.+|+|.
T Consensus 237 ~~~p~~~A~~~l~~~v~~~-~~~ia~~l~~R~~k~r~ 272 (281)
T PRK10592 237 GVNPEINALATLILGVVGI-VGFIAWYLMARAEKQRI 272 (281)
T ss_pred CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_conf 7987999999999999999-99999999988898875
No 21
>COG1176 PotB ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]
Probab=99.95 E-value=9.7e-24 Score=188.70 Aligned_cols=201 Identities=17% Similarity=0.150 Sum_probs=154.5
Q ss_pred CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 20366870740689999999999999999999999999999971502-67899999999974328999999999984014
Q gi|255764497|r 49 VDIVPITLDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRR-LGMVLVPILDIMQSIPILGFLTFTVVYFMNLY 127 (587)
Q Consensus 49 ~~~~~~~~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~-~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~ 127 (587)
..++....++..+++..++|+..+..++++|+++|+|.||+.++++. .+..+.-.+.++.-+..++-...++..++..+
T Consensus 52 l~nY~~~~~~~~y~~v~~~Sl~iA~~~T~~~lligyP~Ay~la~~~~~~r~~ll~lvilPfwts~LiR~yawi~iL~~~G 131 (287)
T COG1176 52 LGNYARLLTDSLYLTVLLRSLWIAALVTLICLLLGYPVAYFLARSPPRWRNLLLLLVILPFWTSLLIRTYAWIVILGRNG 131 (287)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 78899976835899999999999999999999999999999996773799999999999998999999999999983477
Q ss_pred --------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf --------------554210479999999998535999999999972998999999962888201236555262157899
Q gi|255764497|r 128 --------------PGKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLV 193 (587)
Q Consensus 128 --------------~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~ 193 (587)
+.+.++.+.++++.+.+...|+|.+..+++++++|+++.|||+++|||+||+||||++|+++|++.
T Consensus 132 ~iN~~L~~lGl~~~p~~ll~~~~aV~igmvy~~lPfmiLPly~al~~id~~L~eAA~dLGA~~~~~F~~VilPLs~pGi~ 211 (287)
T COG1176 132 LINQALLALGLIDEPLRLLYTETAVIIGMVYIYLPFMILPLYAALEKIDPSLLEAARDLGASPFQTFRRVILPLSLPGII 211 (287)
T ss_pred HHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHEEECCCHHHHH
T ss_conf 16488997688788679880533676899998659999999999983997899999875997654764203217718999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999998998999997354442036788999999863-1132569999999999999
Q gi|255764497|r 194 WNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIK-EQDLLAILYAMLTMLGVIF 253 (587)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~-~~~~~~~~~~~~~i~~~~~ 253 (587)
+|+.++|..+++++.+|+++|++++.. +|..+.++.. ..|.+.+.+...++.++..
T Consensus 212 aG~~lVFi~alG~fi~P~lLGG~~~~~----ig~lI~~q~~~~~nwp~asA~sv~L~~i~~ 268 (287)
T COG1176 212 AGSLLVFIPALGSFVTPALLGGPKVLM----IGNLIYQQFLSARNWPFASALAVVLLLVVL 268 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 999999897758899889856975253----999999998520584478999999999999
No 22
>PRK09497 potB spermidine/putrescine ABC transporter membrane protein; Reviewed
Probab=99.94 E-value=8.6e-24 Score=189.08 Aligned_cols=229 Identities=16% Similarity=0.128 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC-----CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 9999999999999999864102331-----35203668707406899999999999999999999999999999715026
Q gi|255764497|r 22 LLAFVLVIGIINILLHGIQETTVPR-----DIVDIVPITLDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRL 96 (587)
Q Consensus 22 ~~~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~ 96 (587)
+..++.+.+.+.....++...+... ...+++.... ++..++.++||+..++.++++++++|+|+|+++.+.+..
T Consensus 18 ~l~~f~~~Pl~~~i~~SF~~~~~~~~~~~~~tl~ny~~lf-~~~~~~~l~nSl~~a~~~tvi~~~ig~~~A~~l~~~~~~ 96 (285)
T PRK09497 18 WLVLFVFLPNLMIIGTSFLTRDDANFVKMVFTLDNYTRLL-DPLYAEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHK 96 (285)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999999999999999962888887776734289999998-389999999999999999999999999988863016754
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 7-899999999974328999999999984014--------------5542104799999999985359999999999729
Q gi|255764497|r 97 G-MVLVPILDIMQSIPILGFLTFTVVYFMNLY--------------PGKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNI 161 (587)
Q Consensus 97 ~-~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~--------------~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~i 161 (587)
. +.+...+.++..+|+++........++..+ +.+.+++..+.++.......|++++....+++++
T Consensus 97 ~r~~~~~l~~~P~~~p~~v~~~~~~~~~~~~G~ln~~l~~lg~~~~p~~~l~~~~~vii~~v~~~lPf~~l~l~a~l~~i 176 (285)
T PRK09497 97 VRPLLLFLLIVPFWTNSLIRIYGLKIFLGTKGYLNEFLLWLGVIDTPIRIMFTESAVIIGLVYILLPFMVLPLYSSIEKL 176 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHEEECHHHHHHHHHHHHCC
T ss_conf 38999999999998799999999999814330788999981575662354234988878753131206774378788408
Q ss_pred CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-HHHHCCHHH
Q ss_conf 9899999996288820123655526215789999999999998998999997354442036788999999-863113256
Q gi|255764497|r 162 PRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIAL-AIKEQDLLA 240 (587)
Q Consensus 162 ~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~-~~~~~~~~~ 240 (587)
|+|++||||++|||+||+||||++|+.+|+++++..++|..++++|.++.++|++.+. .++..+.+ ..+..|.+.
T Consensus 177 ~~~l~EAA~~lGAs~~~~F~~I~lPl~~Pgi~~~~il~fi~s~~~F~~~~~lgG~~~~----~l~~~i~~~~~~~~~~~~ 252 (285)
T PRK09497 177 DKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFYVSDLLGGAKNL----LIGNVIKSQFLNIRDWPF 252 (285)
T ss_pred CHHHHHHHHHCCCCHHHEEHHEEEHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCC----HHHHHHHHHHHHCCCCHH
T ss_conf 9689999987599978913202208108999999999999998876210010489755----299999999987069069
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999999
Q gi|255764497|r 241 ILYAMLTMLGVIFLY 255 (587)
Q Consensus 241 ~~~~~~~i~~~~~~~ 255 (587)
+.+...++.++..+.
T Consensus 253 aaA~svil~~i~~~~ 267 (285)
T PRK09497 253 GAATSITLTIVMGLM 267 (285)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999999
No 23
>PRK09500 potC spermidine/putrescine ABC transporter membrane protein; Reviewed
Probab=99.94 E-value=9.3e-23 Score=181.59 Aligned_cols=246 Identities=17% Similarity=0.099 Sum_probs=173.8
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCC----CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 16888899-99999999999999999864102331----35203668707406899999999999999999999999999
Q gi|255764497|r 13 RRIFPNIF-DLLAFVLVIGIINILLHGIQETTVPR----DIVDIVPITLDVHSLPQYASRTTLRMLSAMVISLLFTFVYA 87 (587)
Q Consensus 13 rr~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a 87 (587)
+|.+.... .+...+.+.+..+....++....... ...+.+....++.++++..+||+..++.++.+++++|++.|
T Consensus 3 ~r~l~~~~~~lv~~f~~~Pl~~iv~~SF~~~~~~~~~~~fTl~~y~~~f~~~~~~~~~~nSl~ia~~~~~~~~~lg~~~A 82 (257)
T PRK09500 3 GRLLRGGFMTLVYAYLYIPIIILIVNSFNSSRFGINWQGFTTKWYELLMNNDSLLQAAQHSLTMAVFSATFATLIGSLTA 82 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 44999999999999999989999999938998788988968999999987937999999999999999999999999999
Q ss_pred HHHHHCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 999715026-7899999999974328999999999984014554210479999999998535999999999972998999
Q gi|255764497|r 88 TLAAKSRRL-GMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLE 166 (587)
Q Consensus 88 ~~~~~~~~~-~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~ 166 (587)
|...|.+.+ ++.+...+.++..+|..+.+......|...+ ...+....+........|++++..+.+++++|+|+|
T Consensus 83 ~~l~r~~~~~~~~~~~l~~~p~~~P~~v~~i~l~~~~~~~g---~~~~~~~lil~~~~~~lP~~~~~i~~~l~~i~~~l~ 159 (257)
T PRK09500 83 VALYRYRFRGKKFVSGMLFVVMMSPDIVMAISLLVLFMLLG---IQLGFWSLLFAHITFCLPFVVVTVYSRLKGFDVRML 159 (257)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHH
T ss_conf 99975267745699999999999799999999999999735---132099999888885150279999999971796999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 99996288820123655526215789999999999998998999997354442036788999999863113256999999
Q gi|255764497|r 167 EVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAML 246 (587)
Q Consensus 167 eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~ 246 (587)
||||++|||+||.||||++|+++|+++++..++|..+++|+.++.++++++.. + +...+.+.....+.+... +..
T Consensus 160 EAA~~lGAs~~~~f~~VilPl~~P~i~~~~il~F~~s~~ef~~~~~l~g~~~~-t---lp~~i~~~~~~~~~~~~~-Ala 234 (257)
T PRK09500 160 EAAKDLGASEVTILRKIILPLAMPAVAAGWLLSFTLSMDDVVVSSFVTGPSYE-I---LPLKIYSMVKVGVSPEVN-ALA 234 (257)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE-E---HHHHHHHHHHCCCCHHHH-HHH
T ss_conf 99987299987963631298479999999999999999999999975289960-2---899999998737875999-999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999898754
Q gi|255764497|r 247 TMLGVIFLYDQLLFRPMIVW 266 (587)
Q Consensus 247 ~i~~~~~~~~~~~~~~~~~~ 266 (587)
++..+..+....+.+++.|+
T Consensus 235 ~il~~i~~~~~~l~~~l~r~ 254 (257)
T PRK09500 235 TILLVLSLVLVILSQLLARD 254 (257)
T ss_pred HHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999998665
No 24
>COG4176 ProW ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]
Probab=99.94 E-value=2.1e-24 Score=193.47 Aligned_cols=191 Identities=17% Similarity=0.199 Sum_probs=177.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 00006889999999999999999997310000112454366789998544667754446999999999831556650479
Q gi|255764497|r 372 TYQDVLYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRPHISSKIQPFAQLLAAFPANVFFPLVVSCVSYYHLNPNLW 451 (587)
Q Consensus 372 ~~~~~~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~ 451 (587)
........|.....|+..+..+..++.++|+|+|+++.++++.++...|..+.+|++|+.+|..+.+++||.+..+...
T Consensus 83 ~~I~~~GlW~~tM~TLaLVl~a~~isivIGiPlGI~~ar~~~~~~i~~PiLDlMQTmP~FVYLIPav~lFGlG~VPg~i- 161 (290)
T COG4176 83 LLIGNLGLWDQTMQTLALVLTATLISIVIGIPLGIWAARSPRVYRIVRPILDLMQTMPTFVYLIPAVMLFGLGNVPGLI- 161 (290)
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEE-
T ss_conf 9999815089999999999999999999800489998536889999968999986054279999999990788876341-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999999999973998999999974988789989998574577899999999999999999999850556
Q gi|255764497|r 452 LSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGH 531 (587)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~~ 531 (587)
+.++.+.|+.+|.+.-|+||+|+|+.||++++|+|+||.++||.||+++|.+++|...+...|...+++|.|+|.
T Consensus 162 ---AtvIfA~PP~IRlT~LGIrqVp~eliEA~~AFG~t~~Q~L~kVqLPlA~PtIMaGiNQtIMlALsMVVIAsMIGa-- 236 (290)
T COG4176 162 ---ATVIFAMPPMIRLTNLGIRQVPAELIEAADAFGATPRQKLFKVQLPLALPTIMAGINQTIMLALSMVVIASMIGA-- 236 (290)
T ss_pred ---EEEEEECCCHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_conf ---365653681587763241017899999999708988889787207430778998667999999999999998757--
Q ss_pred CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 442237837999999973497989999999999999999997
Q gi|255764497|r 532 IHLRTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFL 573 (587)
Q Consensus 532 ~~~~~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 573 (587)
.|||+...++.++.|.+..+-+.+.++++.+.+||+-
T Consensus 237 -----~GLG~~Vl~~i~~ldig~g~~aGlaIVilAIiLDRit 273 (290)
T COG4176 237 -----GGLGQEVLRGIQRLDIGLGFEAGLAIVILAIILDRLT 273 (290)
T ss_pred -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -----8776899999887213777763089999999999998
No 25
>PRK09421 modB molybdate ABC transporter permease protein; Reviewed
Probab=99.94 E-value=3.6e-23 Score=184.58 Aligned_cols=214 Identities=17% Similarity=0.066 Sum_probs=159.6
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC----
Q ss_conf 07406899999999999999999999999999999715026-7899999999974328999999999984014554----
Q gi|255764497|r 56 LDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRL-GMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGK---- 130 (587)
Q Consensus 56 ~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~-~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~---- 130 (587)
+.+++.|+.+.||+..++.++++++++|++.||..+|.+.+ ++.++.++.++..+|+++........|+..+..+
T Consensus 2 ~~~p~~w~al~~Sl~~a~~s~~~~~~ig~~~A~~l~r~~~~~~~~l~~l~~lp~~~P~iv~~~~~~~~~~~~g~~~~~l~ 81 (229)
T PRK09421 2 ILSPPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSVVHLPLVLPPVVTGYLLLISMGRRGFIGQWLY 81 (229)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 89889999999999999999999999999999999961353089999999999998999999999997144585267899
Q ss_pred ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ------21047999999999853599999999997299899999996288820123655526215789999999999998
Q gi|255764497|r 131 ------VIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGW 204 (587)
Q Consensus 131 ------~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~ 204 (587)
..+.+.+.+.......+|+++....++++++|+++||||+++|||+||+|+||++|+++|+++++..++|..++
T Consensus 82 ~~~gi~~~~~~~g~~l~~~~~~~P~~~~~~~~~l~~i~~~l~EAA~~lGAs~~~~f~~V~lPl~~P~i~~~~il~F~~s~ 161 (229)
T PRK09421 82 EWFGISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSL 161 (229)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98282223459999999999999999999999998599899999988599264675998999899999999999999999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998999997354442036788999999863113256999999999999999999998987544432
Q gi|255764497|r 205 FFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQLLFRPMIVWSNKF 270 (587)
Q Consensus 205 ~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 270 (587)
++++.+..+..+.. ....++..++.+..+..+.....++..++.++..+...+..++..|+.+|+
T Consensus 162 ~ef~~~~~l~~~~p-~~~~tl~~~iy~~~~~~~~~~~aa~l~~v~i~~~~~~ll~~~~l~rR~~~r 226 (229)
T PRK09421 162 GEFGATITFVSNIP-GETQTIPSAMYTLIQTPGGESAAARLCIISIAIALASLLLSEWLARRSRKR 226 (229)
T ss_pred HHHHHHHHHHCCCC-CCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99769998954899-860217999999987389689999999999999999999999999998765
No 26
>CHL00187 cysT sulfate transport protein; Provisional
Probab=99.93 E-value=8.7e-23 Score=181.78 Aligned_cols=180 Identities=16% Similarity=0.065 Sum_probs=153.0
Q ss_pred CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 203668707406899999999999999999999999999999715026-7899999999974328999999999984014
Q gi|255764497|r 49 VDIVPITLDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRL-GMVLVPILDIMQSIPILGFLTFTVVYFMNLY 127 (587)
Q Consensus 49 ~~~~~~~~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~-~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~ 127 (587)
.+++.....+.+.++...||+..++.++++++++|+++||...|++.+ ++.++.++.++..+|+++.+...+..|+..+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~Sl~~s~~~t~i~~~ig~~~A~~l~r~~~~gk~~~~~l~~lP~~iP~~v~a~~~~~~f~~~G 118 (235)
T CHL00187 39 WSDFLQIATEPIALSAYSLTVSMALIAALINGIFGLLIAWVLVRYNFPGKRFLDAAVDLPFALPTSVAGLTLATVYGDNG 118 (235)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999998599999999999999999999999999999999998437618999999999999789999999999964466
Q ss_pred CC---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55---------421047999999999853599999999997299899999996288820123655526215789999999
Q gi|255764497|r 128 PG---------KVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMM 198 (587)
Q Consensus 128 ~~---------~~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l 198 (587)
.. +..++..+.++++....+|++++...++++++|+|+|||||++|||+||+||||++|+++|+++++..+
T Consensus 119 ~~~~~l~~~~~~~~~~~~giii~~~~~~~P~~~~~~~~~l~~i~~~leEAA~~lGAs~~~~f~~I~lPll~p~i~a~~~l 198 (235)
T CHL00187 119 WIGHILSSLGIKIVFTKLGVLLAMIFVSLPFVVRTIQPVLQEIEKELEEAAWSLGASPWETFWKVIFPPLIPALLTGLAL 198 (235)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHEEHHHHHHHHHHHHHH
T ss_conf 17689997076512309999999999887999998999998602999999987399950411312178468999999999
Q ss_pred HHHHHHHHHHHHHHHHCC--CCCHHHHHHHHH
Q ss_conf 999998998999997354--442036788999
Q gi|255764497|r 199 SMSGGWFFVVASEMIVVG--DTVIPLPGIGSY 228 (587)
Q Consensus 199 ~~~~~~~~~~~~~~~g~~--~~~~~~~g~g~~ 228 (587)
+|+.++++++++.++|++ .++.+.+...++
T Consensus 199 ~f~~~~~eFg~~~~lgGn~~~~~~t~~~~iy~ 230 (235)
T CHL00187 199 TFSRAIGEYGSIVLISSNIPFKDLVASVLIFQ 230 (235)
T ss_pred HHHHHHHHHHHHHEEECCCCCCCCHHHHHHHH
T ss_conf 99999999878980256889842048999999
No 27
>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]
Probab=99.93 E-value=1.2e-21 Score=173.40 Aligned_cols=226 Identities=15% Similarity=0.130 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCC--CC---CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-
Q ss_conf 99999999999999986410233--13---5203668707406899999999999999999999999999999715026-
Q gi|255764497|r 23 LAFVLVIGIINILLHGIQETTVP--RD---IVDIVPITLDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRL- 96 (587)
Q Consensus 23 ~~~~~v~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~- 96 (587)
...++..+........++..... +. ...-+....++.++.+.+.||+..++.++.+++++|.+.|+...|.++.
T Consensus 20 ~~~fLylPi~~~v~~Sfn~~~~~~~~p~G~Sl~WY~~l~~~~~~~~a~~~Sl~IA~~s~~~s~~lg~~aA~al~r~~~~g 99 (267)
T COG1177 20 VLLFLYLPLLVLVLYSFNSSRLGLVFPPGFSLKWYGALFSDPRLLSALWNSLLIALLSALLATLLGTLAALALARYRFRG 99 (267)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 99999999999999850588877778998788999998578489999999999999999999999999999999704026
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC
Q ss_conf 78999999999743289999999999840145542104799999999985359999999999729989999999628882
Q gi|255764497|r 97 GMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSG 176 (587)
Q Consensus 97 ~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~ 176 (587)
++.++.+...+..+|.++.......+|...+ ..++..+.+..+.....|++++.+...++++|+++||||+++|||+
T Consensus 100 ~~~~~~l~~~PlvvP~Iv~gi~ll~~f~~~~---~~~~~~~ivlaH~~~~lP~v~~~v~a~l~~~d~~L~eAA~dLGAs~ 176 (267)
T COG1177 100 KNLLEGLILLPLVVPDIVTGIALLLLFAALG---LPGGFWTIVLAHIVFALPFVVVVVSARLQGFDRSLEEAARDLGASP 176 (267)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCH
T ss_conf 8999999974241509999999999999868---8752999999999998668999999999738967999998769988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 0123655526215789999999999998998999997354442036788999999863113256999999999999999
Q gi|255764497|r 177 WQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLY 255 (587)
Q Consensus 177 ~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 255 (587)
||+|+||++|..+|++++|..++|..++.|+.+.....+++.. ++-.++.............+....+..+..++
T Consensus 177 ~~~f~~V~LP~i~PgIlsg~llaF~~S~Defvit~f~~gp~~~----TLP~~i~s~~r~~~~P~i~Alstll~~~~~ll 251 (267)
T COG1177 177 WQTFRRVTLPLILPGILSGALLAFTLSFDEFVITFFLAGPGFT----TLPLQIYSMIRRGITPEINALSTLLLLLSLLL 251 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCC----CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 8898997697527999999999999998677863113289987----21899999865589819999999999999999
No 28
>COG0555 CysU ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=6.2e-23 Score=182.87 Aligned_cols=221 Identities=19% Similarity=0.128 Sum_probs=182.4
Q ss_pred CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 352036687074068999999999999999999999999999997150267-8999999999743289999999999840
Q gi|255764497|r 47 DIVDIVPITLDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLG-MVLVPILDIMQSIPILGFLTFTVVYFMN 125 (587)
Q Consensus 47 ~~~~~~~~~~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~~-~~~~~~l~~~~~iP~~~~~~~~~~~f~~ 125 (587)
..+..++....+.+..+...+|+..++.+++++.++|.|.||...|+++++ |.++.++|++.++|+.+-....+..|+.
T Consensus 41 ~~~~~~~~~~~~~~~~~a~~~S~~~a~~atl~~~vfg~~~a~vL~R~~fpgk~lvdaivDlP~alP~~VaGiaLl~l~~~ 120 (274)
T COG0555 41 LGWAGFWSALTSPRVLAALKLTLLTAFAATLLNLVFGLPLAWVLVRYDFPGKRLVDALVDLPFALPTAVAGIALLLLFGP 120 (274)
T ss_pred CCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCC
T ss_conf 56899999964898999999999999999999999998998985403588489999996276137548999999999667
Q ss_pred CCCC---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1455---------4210479999999998535999999999972998999999962888201236555262157899999
Q gi|255764497|r 126 LYPG---------KVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNM 196 (587)
Q Consensus 126 ~~~~---------~~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~ 196 (587)
.+.. +..++..+++.++.+.+.|++++.+..+++++|+|+||+||++|+|+||+|++|.+|++.|++++|.
T Consensus 121 ~g~~g~~~~~~gi~~~~t~~GVivA~~Fvs~Pf~vr~v~~~~~~id~~~EeaA~sLGas~~~tf~~V~lP~l~pall~G~ 200 (274)
T COG0555 121 NGLLGSLLAPLGIKFAFTPLGVIVAMFFVSLPFVVRTVQPVLEEIDREYEEAARSLGASPLQTFRRVILPLLLPALLAGF 200 (274)
T ss_pred CCCCHHHHCCCCCEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEEEEEHHHCHHHHHHHH
T ss_conf 87403554124756764678999999997033689988999985568899999864898551114244641338999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999899899999735444203678899999986311325699999999999999999999898754443
Q gi|255764497|r 197 MMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQLLFRPMIVWSNK 269 (587)
Q Consensus 197 ~l~~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 269 (587)
.++|..+.++++...++++ +..+..+.....+....++.|+....+..++++.+.+.+ .+..|..+.+.+|
T Consensus 201 ~LsfaR~igEfGavl~iAg-n~p~~t~~~pl~Iy~~~~~~d~~~A~ais~vll~iS~~~-l~~~r~~~~~~~r 271 (274)
T COG0555 201 ILSFARSIGEFGAVLIIAG-NTPYKTETLPLLIYTRLESYDLEAAAAISVVLLLISFIL-LLVIRLLQSRARR 271 (274)
T ss_pred HHHHHHHHCCCCEEEEEEC-CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_conf 9999998245464999814-777877303899999998379357999999999999999-9999999876420
No 29
>COG1174 OpuBB ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]
Probab=99.92 E-value=2.5e-22 Score=178.45 Aligned_cols=195 Identities=18% Similarity=0.263 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 06889999999999999999997310000112454366789998544667754446999999999831556650479999
Q gi|255764497|r 375 DVLYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRPHISSKIQPFAQLLAAFPANVFFPLVVSCVSYYHLNPNLWLSL 454 (587)
Q Consensus 375 ~~~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (587)
..+.++......+..+..+..++..+|+|+|+.+.|+++.+.......+..+++|+.+...+.+..+|.+..+ .++
T Consensus 20 ~~~~~~~~~~~Hl~l~~~a~~~a~~igVplGIl~~r~~~~~~~v~~v~nv~qTiPslAllallipv~GiG~~P----Aii 95 (221)
T COG1174 20 RQDYLLALTLQHLLLVLLAVLIAILIGVPLGILVTRSRRLAGLVLGVANVLQTIPSLALLALLIPVLGIGLTP----AII 95 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCH----HHH
T ss_conf 1879999999999999999999999997889998734888889999999986160899999999985688638----999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999999999999999973998999999974988789989998574577899999999999999999999850556442
Q gi|255764497|r 455 LMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGHIHL 534 (587)
Q Consensus 455 ~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~~~~~ 534 (587)
..+..++.|+++|++.|++++|+++.||||.+|+++||.++||.+|++.|-+++|.|++...+......+.+++.|
T Consensus 96 AL~lYsLLPIvrNT~~GL~~V~~~v~EAa~gmGMT~~Q~L~~VelPlAlPvIlaGIR~a~V~~ig~Atiaa~IGAG---- 171 (221)
T COG1174 96 ALFLYSLLPIVRNTYTGLASVPPSVIEAARGMGMTRWQRLLKVELPLALPVILAGIRTAVVINIGTATIAALIGAG---- 171 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC----
T ss_conf 9999997199999999981498778999886599878798974120018999864899999999999999998277----
Q ss_pred CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23783799999997349798999999999999999999721578999
Q gi|255764497|r 535 RTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFLWHPLYLYG 581 (587)
Q Consensus 535 ~~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 581 (587)
|+|..|.++.+..|.+.+..+.+.++++.+.+|.++ +.++++.
T Consensus 172 ---GLG~~I~~Gl~~~n~~~il~Gai~valLAi~~d~ll-~~~e~~l 214 (221)
T COG1174 172 ---GLGDLIFRGLNLNNTALILAGAIPVALLAILADVLL-GLLERAL 214 (221)
T ss_pred ---CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_conf ---442899820401667999996999999999999999-9999983
No 30
>TIGR01581 Mo_ABC_porter NifC-like ABC-type porter; InterPro: IPR006469 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents a clade of ABC porter genes with relatively weak homology compared to its neighbour clades, the molybdate (IPR006229 from INTERPRO) and sulphate (IPR005667 from INTERPRO) porters. Neighbour-Joining, PAM-distance phylogenetic trees support the separation of these clades in this way. Included in this group are the NifC genes of Clostridium pasteurianum and Pasteurella multocida, which are involved in the biosynthesis and/or control of nitrogenase. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within this group are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulphate porter. There is presently no experimental evidence to support annotations with this degree of specificity.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane.
Probab=99.91 E-value=3.5e-22 Score=177.40 Aligned_cols=204 Identities=18% Similarity=0.158 Sum_probs=172.7
Q ss_pred CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 52036687074068999999999999999999999999999997150-26-78999999999743289999999999840
Q gi|255764497|r 48 IVDIVPITLDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSR-RL-GMVLVPILDIMQSIPILGFLTFTVVYFMN 125 (587)
Q Consensus 48 ~~~~~~~~~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~-~~-~~~~~~~l~~~~~iP~~~~~~~~~~~f~~ 125 (587)
..+.++..+.+.+..+.+..|+..+..+++++..+|+|.||.++|.+ ++ +|.++++++++...||.+-....+..||.
T Consensus 6 ~~s~i~~~L~~~~~~~al~lSl~Ts~~sl~l~~~~g~P~A~~lar~~n~pl~~~l~~ll~LP~VlPPlV~G~aLLl~FG~ 85 (226)
T TIGR01581 6 GASEILSALTDPELIKALRLSLLTSLASLLLAVVLGIPTAYVLARVRNFPLKKLLDTLLDLPLVLPPLVAGIALLLLFGR 85 (226)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 43889999725999999999999999999999999988999998875068547789998665424665888999999720
Q ss_pred CC-CC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 14-55--------4210479999999998535999999999972998999999962888201236555262157899999
Q gi|255764497|r 126 LY-PG--------KVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNM 196 (587)
Q Consensus 126 ~~-~~--------~~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~ 196 (587)
.+ .+ +...+..+++++.++.+.|++.++.+++++++|+|+||+||++|+++.|+||||++|+++|++++|.
T Consensus 86 ~g~lG~~l~~aGi~~~Fs~~gvvlAQ~FVa~p~~vr~~r~~f~~v~~~ye~va~~lG~g~~~t~~~v~lPl~~~~ll~G~ 165 (226)
T TIGR01581 86 LGLLGPYLEAAGIQVIFSTLGVVLAQTFVASPYLVRVARSTFESVDPDYEDVARSLGAGPLETFRKVTLPLARPGLLAGL 165 (226)
T ss_pred CCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 21268999864416788889999999999999999999976730383489999880787226788875775336888879
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 99999998998999997354442036788999999863113256999999999999
Q gi|255764497|r 197 MMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVI 252 (587)
Q Consensus 197 ~l~~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~ 252 (587)
.++|..|+++||+-.++.++.+ ....++=-+++.+.++.|.+......+.+..+.
T Consensus 166 vLafaRalGEFGATL~~AG~~~-g~TrTlPl~iY~~~~~d~~~~aV~~a~~Ll~ia 220 (226)
T TIGR01581 166 VLAFARALGEFGATLMFAGSLQ-GKTRTLPLAIYLNIESDDIEAAVALAVLLLVIA 220 (226)
T ss_pred HHHHHHHHHHHHHHHHHHCCCC-CCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 9999997565678999843677-753012788864574177327999999999999
No 31
>PRK10971 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.91 E-value=5.1e-21 Score=168.95 Aligned_cols=207 Identities=15% Similarity=0.101 Sum_probs=168.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----------
Q ss_conf 889999999999999999997310000112454366-789998544667754446999999999831556----------
Q gi|255764497|r 377 LYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRP-HISSKIQPFAQLLAAFPANVFFPLVVSCVSYYH---------- 445 (587)
Q Consensus 377 ~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~---------- 445 (587)
...+.+..+|+..+..+..++.++|.+.++...+.+ +.++.++........+|+.+........++..+
T Consensus 54 p~~~~al~nTl~ia~~~t~i~~vlG~~~A~~l~r~~f~gr~~l~~l~~lP~~iP~~V~g~~~~~lf~~~G~~~~~l~~~g 133 (277)
T PRK10971 54 PQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGWYGEWLAKFD 133 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
T ss_conf 88999999999999999999999999999999915887389999999999998999999999998466542667899759
Q ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---65047999999999999999999999973998999999974988789989998574577899999999999999999
Q gi|255764497|r 446 ---LNPNLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASI 522 (587)
Q Consensus 446 ---~~~~~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~ 522 (587)
..+....++.+....+|++++...++++++|+|+||||+++|||+||+||||++|+++|++++|..++|..++++..
T Consensus 134 i~~~~~~~giii~~~~~~~Pf~~~~~~a~l~~id~~leEAA~~lGAs~~~~f~~V~lPll~P~i~~g~ll~F~~s~~~f~ 213 (277)
T PRK10971 134 IKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFG 213 (277)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 64101299999999999989999987899984899999999864998657304103985799999999999999998760
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999850556442237837999999973497989999999999999999997215789998763
Q gi|255764497|r 523 VSEVASWGHIHLRTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFLWHPLYLYGTRCL 585 (587)
Q Consensus 523 ~ae~~~~~~~~~~~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~r~ 585 (587)
..-+++++ ....+.-+..+++++.+.+|++...+...++.++.+++-.. .+++.++.+||-
T Consensus 214 ~~~~l~G~-~~~~t~tl~~~iy~~~~~~d~~~a~Als~ill~~sli~~~~-~~~l~~R~~Rr~ 274 (277)
T PRK10971 214 AVIFIAGN-IAWKTEVTSLMIFVRLQEFDYPAASAIASVILAASLLLLFS-INTLQSRFGRRV 274 (277)
T ss_pred HHHHHCCC-CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHC
T ss_conf 67500179-98865149999999998768899999999999999999999-999999998753
No 32
>TIGR03255 PhnV 2-aminoethylphosphonate ABC transport system, membrane component PhnV. This membrane component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.91 E-value=1e-20 Score=166.81 Aligned_cols=196 Identities=16% Similarity=0.080 Sum_probs=148.8
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8707406899999999999999999999999999999715026----789999999997432899999999998401455
Q gi|255764497|r 54 ITLDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRL----GMVLVPILDIMQSIPILGFLTFTVVYFMNLYPG 129 (587)
Q Consensus 54 ~~~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~----~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~ 129 (587)
...++.+ ++...||+..++.++.+++++|++.++...++++. ++.++.+..++..+|..+.....+..|... +.
T Consensus 60 ~~~~~~~-~~a~~~Sl~va~~~a~~a~~lg~~~a~~l~~~~~~~~~~~~~l~~l~~lPl~vP~iv~gl~ll~~f~~~-~~ 137 (272)
T TIGR03255 60 EALGGAA-FDALAASLEIGFCAAAFALACGLGAALALALEGRKRQGVGALLDALFMLPNAIPSVSLGLAILIAFHAG-PL 137 (272)
T ss_pred HHHCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CC
T ss_conf 9882816-899999999999999999999999999999862155548999999999899899999999999999956-84
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 42104799999999985359999999999729989999999628882012365552621578999999999999899899
Q gi|255764497|r 130 KVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVA 209 (587)
Q Consensus 130 ~~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~ 209 (587)
+..++....++.+.....|++++....+++++|+++||||+++|||+||+|+||++|+.+|++++|..++|..+++++.+
T Consensus 138 ~l~~t~~~liiah~~~~lP~~~~~v~a~l~~id~~leeAA~~LGAs~~~~f~~V~LPli~pgilag~~l~F~~S~~ef~~ 217 (272)
T TIGR03255 138 DLNGSLAIVLFAHFALILAFCFRCAAAALAPELADIEEAAASLGAPPAMRLRHVLLPLLMPAIMAALALGFALSLGELGA 217 (272)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 42557999999999999999999999999737930999998869989999999987967999999999999999977615
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9997354442036788999999863113256999999999999999
Q gi|255764497|r 210 SEMIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLY 255 (587)
Q Consensus 210 ~~~~g~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 255 (587)
..+++.++.. ++..++.+..++.+.+...+...+++.+..+.
T Consensus 218 s~~l~~~~~~----TLpv~i~~~~~~g~~~~aaAls~ili~~s~v~ 259 (272)
T TIGR03255 218 TLMIYPPGFA----TLPIAIFGATDRGNIADAAALSILLLAASLLA 259 (272)
T ss_pred HHEECCCCCE----EHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 3234189972----47999999987678488999999999999999
No 33
>COG1174 OpuBB ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]
Probab=99.91 E-value=2.8e-21 Score=170.82 Aligned_cols=192 Identities=21% Similarity=0.315 Sum_probs=180.5
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 07406899999999999999999999999999999715026789999999997432899999999998401455421047
Q gi|255764497|r 56 LDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVIGAE 135 (587)
Q Consensus 56 ~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~~~~~~ 135 (587)
....+++..+...+.++..+..++.++|+|+|+++.|+++.+..+..+..+.|++|+++..-+.+..+|.| .
T Consensus 19 ~~~~~~~~~~~~Hl~l~~~a~~~a~~igVplGIl~~r~~~~~~~v~~v~nv~qTiPslAllallipv~GiG--------~ 90 (221)
T COG1174 19 DRQDYLLALTLQHLLLVLLAVLIAILIGVPLGILVTRSRRLAGLVLGVANVLQTIPSLALLALLIPVLGIG--------L 90 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCC--------C
T ss_conf 71879999999999999999999999997889998734888889999999986160899999999985688--------6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999985359999999999729989999999628882012365552621578999999999999899899999735
Q gi|255764497|r 136 LAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVV 215 (587)
Q Consensus 136 ~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~ 215 (587)
.+.+++.+.++..|+..|++.|++++|+++.||||.+|.++||+++||.+|+++|-+++|.+.+...+.+....+..+|.
T Consensus 91 ~PAiiAL~lYsLLPIvrNT~~GL~~V~~~v~EAa~gmGMT~~Q~L~~VelPlAlPvIlaGIR~a~V~~ig~Atiaa~IGA 170 (221)
T COG1174 91 TPAIIALFLYSLLPIVRNTYTGLASVPPSVIEAARGMGMTRWQRLLKVELPLALPVILAGIRTAVVINIGTATIAALIGA 170 (221)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 38999999999719999999998149877899988659987879897412001899986489999999999999999827
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44420367889999998631132569999999999999999999989
Q gi|255764497|r 216 GDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQLLFRP 262 (587)
Q Consensus 216 ~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 262 (587)
| |+|..+.+..+..|.+....+.+.+.+++++.|.++...
T Consensus 171 G-------GLG~~I~~Gl~~~n~~~il~Gai~valLAi~~d~ll~~~ 210 (221)
T COG1174 171 G-------GLGDLIFRGLNLNNTALILAGAIPVALLAILADVLLGLL 210 (221)
T ss_pred C-------CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7-------442899820401667999996999999999999999999
No 34
>TIGR02139 permease_CysT sulfate ABC transporter, permease protein CysT; InterPro: IPR011865 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CysT, one of two homologous, tandem permeases in the sulphate ABC transporter system; the other is CysW (IPR011866 from INTERPRO). The sulphate transporter has been described in Escherichia coli as transporting sulphate, thiosulphate, selenate, and selenite. Sulphate transporters may also transport molybdate ion if a specific molybdate transporter is not present.; GO: 0015116 sulfate transmembrane transporter activity, 0008272 sulfate transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=99.89 E-value=2.4e-22 Score=178.58 Aligned_cols=223 Identities=17% Similarity=0.160 Sum_probs=178.2
Q ss_pred CCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHH-HHHHHHHHHH
Q ss_conf 31352036687074068999999999999999999999999999997150267-899999999974328-9999999999
Q gi|255764497|r 45 PRDIVDIVPITLDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLG-MVLVPILDIMQSIPI-LGFLTFTVVY 122 (587)
Q Consensus 45 ~~~~~~~~~~~~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~~-~~~~~~l~~~~~iP~-~~~~~~~~~~ 122 (587)
....++.+|+...+++-......|+..++.++++-.++|..+||...||++++ |.++...|++.+.|. ++-.-+...+
T Consensus 32 ~~~gw~~FW~~~~~P~vlaay~~sf~~Al~Aa~~N~vFG~l~AWVLVRY~FPGKri~DAlVDLPFALPTAVAGIaL~TlY 111 (265)
T TIGR02139 32 SQLGWAGFWQIITEPRVLAAYKLSFGTALIAALINAVFGTLLAWVLVRYRFPGKRIVDALVDLPFALPTAVAGIALATLY 111 (265)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 32798899999853899999999999999999999999999988986124750577766623354203479999999996
Q ss_pred HHCCCCC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 8401455--------42104799999999985359999999999729989999999628882012365552621578999
Q gi|255764497|r 123 FMNLYPG--------KVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVW 194 (587)
Q Consensus 123 f~~~~~~--------~~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~ 194 (587)
-.+|.-+ +.-++..++++++.+.+.|++++++.--++++|+|+||||.++|||+||+||||.+|...|++++
T Consensus 112 ~~NGWiG~~l~~lGIKvAfTplGi~~Al~FvsLPFVVRTVQPVL~e~~~E~EEAA~~LGAS~w~tF~~vilP~L~PALLT 191 (265)
T TIGR02139 112 APNGWIGSFLEPLGIKVAFTPLGIVVALVFVSLPFVVRTVQPVLEEIEKELEEAAASLGASRWQTFWKVILPALLPALLT 191 (265)
T ss_pred CCCCCCHHHHHHCCCEEEEECCCEEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHCCCCHHEEEEEECCCCCCHHHH
T ss_conf 28894012585549878872010143423325882573114300058864899976516882000222331444006999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999899899999735444203678899999986311325699999999999999999999898754443
Q gi|255764497|r 195 NMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQLLFRPMIVWSNK 269 (587)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 269 (587)
|..++|..+.+++|..-.+.+ +..+...-.=-.+.+-.++.|+..+-+...+|+++.+.+ .+.-..+|.+.+|
T Consensus 192 G~ALaFARa~GEYGSViFIAG-N~P~~tEI~PLLI~~kLEqYDY~gATaIA~vmL~~SF~~-Ll~IN~lQ~~~~r 264 (265)
T TIGR02139 192 GFALAFARAVGEYGSVIFIAG-NLPMKTEIAPLLIFIKLEQYDYAGATAIAVVMLLISFVL-LLFINLLQWRALR 264 (265)
T ss_pred HHHHHHHHHHHHHHCEEEECC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCC
T ss_conf 789988754323330002226-888067889999977754412378999999999999999-9999999997506
No 35
>PRK10592 putrescine transporter subunit: membrane component of ABC superfamily; Provisional
Probab=99.89 E-value=1.4e-20 Score=165.88 Aligned_cols=205 Identities=13% Similarity=0.037 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHC-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------C
Q ss_conf 88999999999999999999731000011245436-6-7899985446677544469999999998315566-------5
Q gi|255764497|r 377 LYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFR-P-HISSKIQPFAQLLAAFPANVFFPLVVSCVSYYHL-------N 447 (587)
Q Consensus 377 ~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~-------~ 447 (587)
...+.+..+|+.-+..+..++..+|.+.++...|. + +.++.+.........+|..+........+...+. .
T Consensus 59 ~~~~~a~~~Sl~ia~~~t~i~~~lG~~~A~~l~r~~~~~g~~~~~~l~~~Pl~vP~iv~gl~l~~~f~~~g~~~g~~~~~ 138 (281)
T PRK10592 59 DAMMSAVGLSLTIAACAATMAAILGTIAAVVMVRFGRFRGSNGFAFMITAPLVMPDVITGLSLLLLFVALGHAIGWPADR 138 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHC
T ss_conf 78999999999999999999999999999999980553306999999998998678999999999999846322532002
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 04799999999999999999999997399899999997498878998999857457789999999999999999999985
Q gi|255764497|r 448 PNLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVA 527 (587)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~ 527 (587)
......+.+...+.|++.+.+.++++++|+++||||+++||++||+|+||++|+++|++++|..++|..++++.+++.++
T Consensus 139 ~~~~i~i~~~~~~~P~~~~~i~a~l~~id~~leEAA~~LGAs~~~~f~~V~LPli~Pgiiag~il~F~~s~~ef~~~~~l 218 (281)
T PRK10592 139 GMLTIWLAHVTFCTAYVAVVISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFV 218 (281)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_conf 37899999999999999999999998589279999988199988883435417115989999999999999877788621
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHC
Q ss_conf 0556442237837999999973497989999999999999999997215789998-7633
Q gi|255764497|r 528 SWGHIHLRTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFLWHPLYLYGT-RCLR 586 (587)
Q Consensus 528 ~~~~~~~~~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~r~~ 586 (587)
++++. +.+...|++..+.+..+.+.|...++.++...+..+. .+|..+.| ||.|
T Consensus 219 ~g~~~----~TLpv~iy~~~~~~~~p~~~A~~~l~~~v~~~~~~ia-~~l~~R~~k~r~r 273 (281)
T PRK10592 219 SGPGA----TTLPMLVFSSVRMGVNPEINALATLILGVVGIVGFIA-WYLMARAEKQRIR 273 (281)
T ss_pred ECCCC----CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_conf 08998----4569999999871798799999999999999999999-9999888988758
No 36
>TIGR02141 modB_ABC molybdate ABC transporter, permease protein; InterPro: IPR011867 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterised in Escherichia coli , Staphylococcus carnosus Rhodobacter capsulatus and Azotobacter vinlandii . Molybdate is chemically similar to sulphate, thiosulphate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulphate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulphate permease proteins and not included in this model.; GO: 0015098 molybdate ion transmembrane transporter activity, 0015689 molybdate ion transport, 0016021 integral to membrane.
Probab=99.89 E-value=5e-21 Score=169.03 Aligned_cols=192 Identities=19% Similarity=0.148 Sum_probs=160.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCC---------C-CCHH
Q ss_conf 99999999999999999999999971502678-9999999997432899999999998401-455---------4-2104
Q gi|255764497|r 67 RTTLRMLSAMVISLLFTFVYATLAAKSRRLGM-VLVPILDIMQSIPILGFLTFTVVYFMNL-YPG---------K-VIGA 134 (587)
Q Consensus 67 ~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~~~-~~~~~l~~~~~iP~~~~~~~~~~~f~~~-~~~---------~-~~~~ 134 (587)
.|+..+..++++++.+|++.||+++|+++..| .++.++.++-..||.|.....+..||.. ++. + ...+
T Consensus 2 LSlk~A~~~Tl~~~~LGi~~A~~La~~~f~gK~~le~L~~LPLVLPPtV~Gf~LL~~fG~~~G~~G~l~~~~~~~Gl~Ft 81 (212)
T TIGR02141 2 LSLKVAVIATLLLLPLGIPVAWLLARSRFRGKSLLEALVTLPLVLPPTVLGFYLLLAFGRNSGPIGKLLELLGISGLVFT 81 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHH
T ss_conf 79999999999999999999999988617604544644432663563789999999880357407789886506852466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999999998535999999999972998999999962888201236555262157899999999999989989999973
Q gi|255764497|r 135 ELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIV 214 (587)
Q Consensus 135 ~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g 214 (587)
+.+.+.+-...++|.++.....+++++|+|++|+||++|+|++++|+||+||+++|++++|+.++|..++++|++..|++
T Consensus 82 ~~g~vlAs~~VSfPl~v~~~~~a~~~~~~~~~~~ArtLGaS~~~~f~~v~LPL~~pG~l~G~vL~FAR~LGEFGAtlm~a 161 (212)
T TIGR02141 82 FAGAVLASVVVSFPLMVRTIRGAFEAVDPDLEEAARTLGASELRVFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFA 161 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999977689999999986271289999882787899899998573289999999999997502113443100
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 544420367889999998631-132569999999999999999999
Q gi|255764497|r 215 VGDTVIPLPGIGSYIALAIKE-QDLLAILYAMLTMLGVIFLYDQLL 259 (587)
Q Consensus 215 ~~~~~~~~~g~g~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~ 259 (587)
++-.. ..+++=-.|+++... .|.+.+....++++.+++......
T Consensus 162 GNIpG-kT~T~plaIY~~v~~lg~~~~A~~l~l~ll~~s~~~ll~~ 206 (212)
T TIGR02141 162 GNIPG-KTRTIPLAIYDAVESLGDYEAAHLLSLVLLALSLIVLLLV 206 (212)
T ss_pred CCCCC-CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 46979-6301767788677057886789999999999999999999
No 37
>TIGR00969 3a0106s02 sulfate ABC transporter, permease protein; InterPro: IPR005667 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown , that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices, This entry describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulphate ABC transporter; GO: 0015563 uptake transmembrane transporter activity, 0006810 transport, 0016020 membrane.
Probab=99.89 E-value=2.1e-23 Score=186.23 Aligned_cols=235 Identities=14% Similarity=0.081 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHHHHHHHHHCCC-CCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-HHH
Q ss_conf 9999999999999998641023-31352036687074068999999999999999999999999999997150267-899
Q gi|255764497|r 23 LAFVLVIGIINILLHGIQETTV-PRDIVDIVPITLDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLG-MVL 100 (587)
Q Consensus 23 ~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~~-~~~ 100 (587)
+.+.++...+....+....... -......+++..+++...+....|+..++.+..+-.++|+..||..+|+++++ +.+
T Consensus 28 I~~~l~Y~~liL~lP~~~l~~~~f~~gl~~~~~~~tdP~~~~A~~lT~~~aliav~lN~vFG~~~AWvLtR~~FPGr~lL 107 (280)
T TIGR00969 28 IGIALLYVFLILLLPVIALFVQAFSKGLEQFWQNATDPNAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLL 107 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 99999999999999999999999745988999984298899999999999999999999999999999971269825899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-CCCC--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 999999974328999999999984-0145--------5421047999999999853599999999997299899999996
Q gi|255764497|r 101 VPILDIMQSIPILGFLTFTVVYFM-NLYP--------GKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRS 171 (587)
Q Consensus 101 ~~~l~~~~~iP~~~~~~~~~~~f~-~~~~--------~~~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~ 171 (587)
+.++|++.++|+.+-......++| .|.. -+..++..++..++.+.++|++++.+.--+++..+|.||||++
T Consensus 108 da~~DLPFAlspvVAGL~l~llYg~~Gw~G~~~~~fgiqI~F~~~G~~lAmiFvs~PFVvRev~PVL~Elg~e~EEAA~t 187 (280)
T TIGR00969 108 DALIDLPFALSPVVAGLTLALLYGSNGWLGSWLASFGIQIIFTWPGVALAMIFVSLPFVVREVQPVLEELGTEAEEAAAT 187 (280)
T ss_pred HHHHHCCCCCCHHHHHHEEEEEECCCCCCCCHHHHCCCEEEEECCCEEEEEEEECCCCEEEEECCCHHHCCCCHHHHHHH
T ss_conf 99862133425067533000453577851132301786899841214666534216804543100134138557899986
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 28882012365552621578999999999999899899999735444203678899999986311325699999999999
Q gi|255764497|r 172 FRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGV 251 (587)
Q Consensus 172 ~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~ 251 (587)
+||++||+||||+||..+|++++|..+++..++++||..-++.++ -.......--.+.+..++.|+....++..++.++
T Consensus 188 LGA~~WQtFwRV~LP~i~w~llyGv~Lt~aRAlGEFGaV~~vSgn-i~gkt~~lplli~~~l~~Yd~~gA~~ia~vL~l~ 266 (280)
T TIGR00969 188 LGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFGAVVVVSGN-IPGKTLTLPLLIFERLEQYDYPGAYVIAAVLLLV 266 (280)
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEEECC-CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 289983026787668872678886787655654301107899446-8863120156644476603607899999999999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|255764497|r 252 IFLYDQL 258 (587)
Q Consensus 252 ~~~~~~~ 258 (587)
.+++..+
T Consensus 267 slv~L~~ 273 (280)
T TIGR00969 267 SLVTLFL 273 (280)
T ss_pred HHHHHHH
T ss_conf 9999999
No 38
>PRK09421 modB molybdate ABC transporter permease protein; Reviewed
Probab=99.89 E-value=6.6e-20 Score=160.91 Aligned_cols=209 Identities=11% Similarity=-0.006 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--------
Q ss_conf 889999999999999999997310000112454366-78999854466775444699999999983155665--------
Q gi|255764497|r 377 LYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRP-HISSKIQPFAQLLAAFPANVFFPLVVSCVSYYHLN-------- 447 (587)
Q Consensus 377 ~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~-------- 447 (587)
...|.+..+|+..+..+..++..+|.+.++...+.+ +.++.++........+|+.+........++..+.-
T Consensus 5 p~~w~al~~Sl~~a~~s~~~~~~ig~~~A~~l~r~~~~~~~~l~~l~~lp~~~P~iv~~~~~~~~~~~~g~~~~~l~~~~ 84 (229)
T PRK09421 5 PPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSVVHLPLVLPPVVTGYLLLISMGRRGFIGQWLYEWF 84 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 89999999999999999999999999999999961353089999999999998999999999997144585267899982
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ------04799999999999999999999997399899999997498878998999857457789999999999999999
Q gi|255764497|r 448 ------PNLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNAS 521 (587)
Q Consensus 448 ------~~~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~ 521 (587)
.....+..+.+..+|++++.+.++++++|+|+||||+++|||+||+|+||++|+++|++++|..++|..++++.
T Consensus 85 gi~~~~~~~g~~l~~~~~~~P~~~~~~~~~l~~i~~~l~EAA~~lGAs~~~~f~~V~lPl~~P~i~~~~il~F~~s~~ef 164 (229)
T PRK09421 85 GISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEF 164 (229)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 82223459999999999999999999999998599899999988599264675998999899999999999999999997
Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99998505564422378379999999734979899999999999999999972157899987633
Q gi|255764497|r 522 IVSEVASWGHIHLRTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFLWHPLYLYGTRCLR 586 (587)
Q Consensus 522 ~~ae~~~~~~~~~~~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~r~~ 586 (587)
.....+.++.. -..+.+...|++..+.++.....+...++.++....-.++.+.+.|+.+||..
T Consensus 165 ~~~~~l~~~~p-~~~~tl~~~iy~~~~~~~~~~~aa~l~~v~i~~~~~~ll~~~~l~rR~~~r~g 228 (229)
T PRK09421 165 GATITFVSNIP-GETQTIPSAMYTLIQTPGGESAAARLCIISIAIALASLLLSEWLARRSRKRLG 228 (229)
T ss_pred HHHHHHHCCCC-CCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 69998954899-86021799999998738968999999999999999999999999999876548
No 39
>TIGR01253 thiP thiamine/thiamine pyrophosphate ABC transporter, permease protein; InterPro: IPR005947 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents thiamine ABC transporter, permease protein in bacteria, believed to be involved in the specific translocation of thiamine and its phosphoesters across the inner membrane. The protein belongs to the larger ABC transport system. It has been experimentally demonstrated that mutants in the various steps in the de novo synthesis of thiamine and its biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). Thiamine pyrophosphate (TPP)1 is a required cofactor synthesized de novo in Salmonella typhimurium. The primary role for TPP is in central metabolism as an electron carrier and nucleophile for such enzymes as pyruvate dehydrogenase (1.2.4.1 from EC), acetolactate synthase (4.1.3.18 from EC), and -ketoglutarate dehydrogenase (1.2.4.2 from EC). Despite its importance in cellular physiology, neither the de novo biosynthetic pathway nor the salvage systems for thiamine are fully understood in any organism.; GO: 0005215 transporter activity, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=99.89 E-value=2.7e-16 Score=134.69 Aligned_cols=449 Identities=12% Similarity=0.029 Sum_probs=315.4
Q ss_pred HCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 102331352036687074068999999999999999999999999999997150267-8999999999743289999999
Q gi|255764497|r 41 ETTVPRDIVDIVPITLDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLG-MVLVPILDIMQSIPILGFLTFT 119 (587)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~~-~~~~~~l~~~~~iP~~~~~~~~ 119 (587)
....|...+... ..+..++|...-|.+.++.++++|++.|+.+|=+.-|.|+++ +++...+.+-...|.++-..-.
T Consensus 28 ~~~~~~~~W~A~---~~D~YL~H~~~FSF~QAlLS~~LS~~~~~lLARALy~~~F~G~~~LL~L~~lTl~LP~LV~~FG~ 104 (519)
T TIGR01253 28 FALAGELDWVAV---FTDDYLQHLVLFSFGQALLSALLSVIFALLLARALYRKRFLGKKALLKLMALTLVLPVLVVVFGL 104 (519)
T ss_pred HHHCCCCCEEEE---EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 873786560677---62407899999998999999999999999999997406884268999999999999999999977
Q ss_pred HHHHHCCC------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 99984014------------554210479999999998535999999999972998999999962888201236555262
Q gi|255764497|r 120 VVYFMNLY------------PGKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPF 187 (587)
Q Consensus 120 ~~~f~~~~------------~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~ 187 (587)
+-..|..+ -....|+..++..++.....|.......+++++||.+.++-|..+|...||-++-|++|.
T Consensus 105 ~~~YG~~GWLA~L~~~lGl~W~~~~YGL~GIL~AH~FFN~PlA~~LlLQ~L~~IP~~QRQLAAQL~l~~W~F~~lVEWP~ 184 (519)
T TIGR01253 105 LSVYGRSGWLATLANLLGLEWTFSIYGLSGILLAHLFFNLPLAARLLLQALESIPYEQRQLAAQLNLRSWQFVKLVEWPV 184 (519)
T ss_pred HHHCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEEECHH
T ss_conf 76405753799999871875034334157999999996156999999998741781577999971677530566630512
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 15789999999999998998999997354442036788999999863113256999999999999999999998987544
Q gi|255764497|r 188 SMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQLLFRPMIVWS 267 (587)
Q Consensus 188 ~~P~i~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 267 (587)
.|..+.-...+.|+.|+.+|.+...+|+|.+..+.+.-.|+... .+.|.+++..-...-++.++.+..+..|
T Consensus 185 lR~Q~~P~~~LIFMLCF~SF~~VL~LGGGPQ~TT~E~AIYQA~~--y~yD~~~AAllAlLQ~V~CL~L~~L~~R------ 256 (519)
T TIGR01253 185 LRRQILPVAALIFMLCFASFAVVLSLGGGPQATTLELAIYQALL--YDYDLAKAALLALLQFVFCLILVLLSSR------ 256 (519)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_conf 33211258999999998889998735898406899999999987--3168468999999999999999999887------
Q ss_pred HHHHHHHHCCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 4321222100112102456-555778998888878889999999999987665654200023445544321012231358
Q gi|255764497|r 268 NKFRLERTTGIYPADSWVL-YLFRKTNFLRFIGYSSWNFFSPLSNNVKKLCRTLGVIRFHFPENFLQLCSNQRVSYMLDI 346 (587)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (587)
.+.....+......|+. +.+...+.... ............+......+......
T Consensus 257 --lS~~~~~G~~~~~~W~~P~~~~~~~I~~~-~~~~~~~llLl~P~L~~~~~~~~s~~---------------------- 311 (519)
T TIGR01253 257 --LSKAIANGLSLLNIWFDPDDKLAVKIFDI-LLLLLALLLLLSPLLAVLVDALSSRN---------------------- 311 (519)
T ss_pred --HHHHCCCCCCHHCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH----------------------
T ss_conf --87640577520114558875227899999-99999999986479999997531234----------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCH-----HHHHHHHHH
Q ss_conf 998778889999987543210000000006889999999999999999997310000112454366-----789998544
Q gi|255764497|r 347 FWFCVVCGVAIGIAWQSIGYIVNHFTYQDVLYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRP-----HISSKIQPF 421 (587)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~~ 421 (587)
-........+|.+...|+.-+..+-++++..++.+-....+.+ .....++..
T Consensus 312 -----------------------L~~V~~~~~LW~AL~~SL~IA~~~~~L~~~l~~~LL~~SR~L~~~~~~~~~Q~~~~~ 368 (519)
T TIGR01253 312 -----------------------LLEVLANSVLWRALGYSLRIALLAALLALVLAIALLLLSRRLRALQKQKISQVLINA 368 (519)
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -----------------------688873247899998899999999999999999999875889999878898899984
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 66775444699999999983155665---047999999999999999999999973998999999974988789989998
Q gi|255764497|r 422 AQLLAAFPANVFFPLVVSCVSYYHLN---PNLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYII 498 (587)
Q Consensus 422 ~~~~~~ip~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~ 498 (587)
...+-++|.+++.....+........ .+..+++.=.+.+.||+.+-..+=++++-+.+|+--+|+|..+|++++-|.
T Consensus 369 GM~ILA~P~~VLA~GlFLLL~~~~~~~~~~~~IV~F~NAL~A~Py~L~~L~~P~~~~~~~Y~~LC~SLGI~GW~Rl~~~E 448 (519)
T TIGR01253 369 GMLILAIPILVLATGLFLLLNDRIFLNIDLDIIVVFTNALSAIPYVLKVLEAPFRDITARYENLCNSLGIVGWSRLKLVE 448 (519)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 28999977999999899986134677754201013454777635999984051578899998755321733004778887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCH
Q ss_conf 574577899999999999999999999850556442237837999999973497
Q gi|255764497|r 499 LPGIFPYYVTGAITACGGAWNASIVSEVASWGHIHLRTTGLGAYIAESTEKGSF 552 (587)
Q Consensus 499 LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~~~~~~~~GlG~~i~~~~~~~~~ 552 (587)
+-..+-=+--++-++...+.....+..++|- . .-+.+.+++|+...+++.
T Consensus 449 ~~~L~~PL~~AlAl~~~LS~GDF~~~ALFGN--~--~F~~LP~~LYQQ~G~YR~ 498 (519)
T TIGR01253 449 LKALKAPLAYALALALVLSLGDFTVVALFGN--D--DFRSLPFLLYQQLGSYRS 498 (519)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHEEEECC--C--CCCHHHHHHHHHHCCCCC
T ss_conf 9998779999999999985211562001037--5--321137899987235336
No 40
>COG4149 ModC ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.7e-21 Score=172.49 Aligned_cols=198 Identities=17% Similarity=0.126 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--------
Q ss_conf 0689999999999999999999999999999971502678-9999999997432899999999998401455--------
Q gi|255764497|r 59 HSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLGM-VLVPILDIMQSIPILGFLTFTVVYFMNLYPG-------- 129 (587)
Q Consensus 59 ~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~~~-~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~-------- 129 (587)
.+.|+.++.|+..+..++++++.+|+++||+.+|.+...| .++.++.++...||.+.....+..||..++.
T Consensus 3 ~~~~~~l~LSlkvA~ist~~~l~lgi~~a~~Lar~~~~~k~ll~~lv~LPLVLPPtV~G~~LLi~fgr~g~iG~~l~~~~ 82 (225)
T COG4149 3 PEELTALLLSLKVALISTLLLLPLGIALAYLLARRRFRGKSLLESLVLLPLVLPPVVLGFLLLVLFGRNGFIGQFLEDWF 82 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHC
T ss_conf 67888999999999999999999999999999725577630999999732368953899999999747770678999975
Q ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --421047999999999853599999999997299899999996288820123655526215789999999999998998
Q gi|255764497|r 130 --KVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFV 207 (587)
Q Consensus 130 --~~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~ 207 (587)
+...++.+.+++....++|.|+...+.+++++|+++||||+++|+|+||+|+||++|+++|++++|..++|..++++|
T Consensus 83 g~~~~Fs~~gavlAs~vvslPlmv~~~~~a~~~id~~le~aA~tlGas~~~vf~~i~LPLalpGIlag~iLsFAralGEF 162 (225)
T COG4149 83 GLSLAFSWQGAVLASVVVSLPLMVRPLRLAFEAIDRELEEAARTLGASRWEVFFRITLPLALPGILAGVILSFARALGEF 162 (225)
T ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHEEEECCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 97079844899999999988989999999998568459999998188802131001402210679999999999986205
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999735444203678899999986311325699999999999999999
Q gi|255764497|r 208 VASEMIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQ 257 (587)
Q Consensus 208 ~~~~~~g~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 257 (587)
++..+++++- ....+++-..++.+.+..|...+....++.+.+.++...
T Consensus 163 GAtlm~aGNI-pG~T~Tlp~aIY~~~q~g~~~~A~~l~li~v~is~~~L~ 211 (225)
T COG4149 163 GATLMFAGNI-PGETQTLPLAIYTAVQAGNYALAHRLVLILVVISLLVLF 211 (225)
T ss_pred CEEEEEECCC-CCCCEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 7079875478-885311069999999818788999999999999999999
No 41
>COG0395 UgpE ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]
Probab=99.89 E-value=8.1e-19 Score=152.99 Aligned_cols=209 Identities=18% Similarity=0.220 Sum_probs=161.3
Q ss_pred HHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 6870740-689999999999999999999999999999971502678999999999-74328999999999984014554
Q gi|255764497|r 53 PITLDVH-SLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLGMVLVPILDIM-QSIPILGFLTFTVVYFMNLYPGK 130 (587)
Q Consensus 53 ~~~~~~~-~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~~~~~~~~l~~~-~~iP~~~~~~~~~~~f~~~~~~~ 130 (587)
....+.. +.++..+||+..++.++++++++|.+.||..+|.++++|.+.-.+.+. .++|..+........+. ..+
T Consensus 62 ~~~~~~~~~~~~~~~NS~iva~~~t~l~~~~~~laaYalar~~f~g~~~l~~~~l~~~m~P~~v~~iPl~~~~~---~lg 138 (281)
T COG0395 62 RTVFSGGPGFLRYFLNSLIVAVGSTVLSLLLSSLAAYALARFRFKGRKLLFLLLLLTLMLPAQVLLIPLYLLMR---KLG 138 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCC
T ss_conf 99998347899999989999999999999999998999998533609999999999998569999998999999---826
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21047999999999853599999999997299899999996288820123655526215789999999999998998999
Q gi|255764497|r 131 VIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVAS 210 (587)
Q Consensus 131 ~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~ 210 (587)
...+..+.+........|......++-++++|+|+|||||.+|||+||.|+||.+|+++|++.+..+..|..+|+++.-|
T Consensus 139 l~nt~~glil~~~~~~~pf~ifl~~~ff~~iP~eLeEAA~iDGas~~~if~kI~lPl~~P~iaa~aI~~fi~~WN~fl~p 218 (281)
T COG0395 139 LLNTYWGLILPYLAFGLPFAIFLLRQFFRTIPKELEEAARIDGASEFQIFFKIVLPLAKPGLAAVAIFTFIGAWNEFLWP 218 (281)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 61047999999999988899999999998698999999998289657899999987037899999999999999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9973544420367889999998-631132569999999999999999999989875
Q gi|255764497|r 211 EMIVVGDTVIPLPGIGSYIALA-IKEQDLLAILYAMLTMLGVIFLYDQLLFRPMIV 265 (587)
Q Consensus 211 ~~~g~~~~~~~~~g~g~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 265 (587)
..+....+..+.+ ++.....+ ....|.+..+++.....+-.+++....+|...+
T Consensus 219 li~~~~~~~~tl~-v~l~~~~~~~~~~~w~~~~A~~vi~~lP~li~f~~~Qr~~v~ 273 (281)
T COG0395 219 LILLSSPNLLTLP-VGLNSFGGSEGGTDWGLIMAAAVLAILPVLIVFLFFQRYFVR 273 (281)
T ss_pred HHHHCCCCCCCHH-HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9991887642199-999996343356668999999999999999999999999999
No 42
>TIGR03226 PhnU 2-aminoethylphosphonate ABC transporter, permease protein. This ABC transporter permease (membrane-spanning) component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238).
Probab=99.89 E-value=1.3e-19 Score=158.75 Aligned_cols=200 Identities=18% Similarity=0.078 Sum_probs=157.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---------
Q ss_conf 8899999999999999999973100001124543667-899985446677544469999999998315566---------
Q gi|255764497|r 377 LYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRPH-ISSKIQPFAQLLAAFPANVFFPLVVSCVSYYHL--------- 446 (587)
Q Consensus 377 ~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~--------- 446 (587)
...+.+..+|+..+..++.++.++|+++++...+.+. .++.+.........+|..+........++..+.
T Consensus 88 ~~~~~al~nTl~~a~~~t~~~lvlG~~lA~~L~r~~f~g~~~l~~ll~lp~~lP~~v~a~a~~~l~~~~G~ln~~L~~l~ 167 (312)
T TIGR03226 88 HDFRDALGNTLQIAFAAAAGALLLGSALAAILFFIPFPGAELIGRFLDLFIAFPSFLIAFAFIFIYGSAGLLNGALMRAF 167 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf 67999999999999999999999999999999962376289999999999998899999999999835770779999962
Q ss_pred ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ----------5047999999999999999999999973998999999974988789989998574577899999999999
Q gi|255764497|r 447 ----------NPNLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGG 516 (587)
Q Consensus 447 ----------~~~~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~ 516 (587)
.+...+++......+|++++.+.++++++|+++||||+++|||+||+||||++|+++|++++|..+.|..
T Consensus 168 gl~~~p~~~l~s~~gVvla~i~~~~Pf~~l~~~a~l~~id~~l~EAA~~lGAs~~~~Fr~VtLPll~P~i~ag~lL~Fi~ 247 (312)
T TIGR03226 168 AFDAPPLDFLFGAGGVILAEITFFTPFVMRPLLAAFAQIDKRLLEAASILGAHGLMLAGQVIFPAALPAIAAGGILCFLL 247 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86677457774099999999999899999999999996897899999884999888678742784689999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999850556442237837999999-973497989999999999999999997215789998763
Q gi|255764497|r 517 AWNASIVSEVASWGHIHLRTTGLGAYIAES-TEKGSFPEVVLGVLIMCCFVLALNRFLWHPLYLYGTRCL 585 (587)
Q Consensus 517 a~~~~~~ae~~~~~~~~~~~~GlG~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~r~ 585 (587)
++++.....+++++++ ..++.+|++. ....|++...+..+++.++.+.+-.+ |++.+||.
T Consensus 248 ~~~~F~~~~~lgg~~~----~tl~~~Iy~~~~~~~d~~~AaAlavillv~~l~l~~l-----~r~~~rR~ 308 (312)
T TIGR03226 248 TLNEFGILLFIGAAGL----ITLPMAIYSKAILDIDLPAAAAGALIMIALSLALFAL-----YRLAARRA 308 (312)
T ss_pred HHHHHCCEEEEECCCC----EEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHC
T ss_conf 9977541134408997----0179999999987579899999999999999999999-----99998763
No 43
>TIGR03255 PhnV 2-aminoethylphosphonate ABC transport system, membrane component PhnV. This membrane component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.89 E-value=5.6e-20 Score=161.41 Aligned_cols=190 Identities=9% Similarity=-0.014 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCHHHHH
Q ss_conf 99999999999999999731000011245436----67899985446677544469999999998315---566504799
Q gi|255764497|r 380 IWLGCITMFRVVVLIIIASIIWIPVGIWIGFR----PHISSKIQPFAQLLAAFPANVFFPLVVSCVSY---YHLNPNLWL 452 (587)
Q Consensus 380 ~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~---~~~~~~~~~ 452 (587)
+.+...|+.....+..++..+|++.++...+. +...+.++........+|..+........|.. ...++.+..
T Consensus 67 ~~a~~~Sl~va~~~a~~a~~lg~~~a~~l~~~~~~~~~~~~~l~~l~~lPl~vP~iv~gl~ll~~f~~~~~~l~~t~~~l 146 (272)
T TIGR03255 67 FDALAASLEIGFCAAAFALACGLGAALALALEGRKRQGVGALLDALFMLPNAIPSVSLGLAILIAFHAGPLDLNGSLAIV 146 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 89999999999999999999999999999986215554899999999989989999999999999995684425579999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999999999999739989999999749887899899985745778999999999999999999998505564
Q gi|255764497|r 453 SLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGHI 532 (587)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~~~ 532 (587)
++.+.+..+|++++.+.++++|+|+++||||+++||++||+||||++|+++|++++|..++|..++.+...+-+++++++
T Consensus 147 iiah~~~~lP~~~~~v~a~l~~id~~leeAA~~LGAs~~~~f~~V~LPli~pgilag~~l~F~~S~~ef~~s~~l~~~~~ 226 (272)
T TIGR03255 147 LFAHFALILAFCFRCAAAALAPELADIEEAAASLGAPPAMRLRHVLLPLLMPAIMAALALGFALSLGELGATLMIYPPGF 226 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC
T ss_conf 99999999999999999999737930999998869989999999987967999999999999999977615323418997
Q ss_pred CCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 42237837999999973497989999999999999999997
Q gi|255764497|r 533 HLRTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFL 573 (587)
Q Consensus 533 ~~~~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 573 (587)
..+..+|++..+.++.+...+...++.++.+..-..+
T Consensus 227 ----~TLpv~i~~~~~~g~~~~aaAls~ili~~s~v~li~~ 263 (272)
T TIGR03255 227 ----ATLPIAIFGATDRGNIADAAALSILLLAASLLALIAI 263 (272)
T ss_pred ----EEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf ----2479999999876784889999999999999999999
No 44
>PRK11602 cysW sulfate/thiosulfate transporter permease subunit; Provisional
Probab=99.88 E-value=2.6e-19 Score=156.60 Aligned_cols=206 Identities=15% Similarity=0.049 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---------
Q ss_conf 889999999999999999997310000112454366-7899985446677544469999999998315566---------
Q gi|255764497|r 377 LYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRP-HISSKIQPFAQLLAAFPANVFFPLVVSCVSYYHL--------- 446 (587)
Q Consensus 377 ~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~--------- 446 (587)
...+.+..+|+..+..++.++.++|.++++...+.+ +.++.++........+|+.+........++..+.
T Consensus 60 p~~~~al~~Tl~~a~~~~~i~lvlG~~lA~~l~r~~f~gr~~~~~l~~lP~~ip~vV~g~~~~~l~~~~G~l~~~L~~~~ 139 (291)
T PRK11602 60 PDMLHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWLDEHN 139 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
T ss_conf 78999999999999999999999999999999927886089999999998863799999999998264437899998558
Q ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ----5047999999999999999999999973998999999974988789989998574577899999999999999999
Q gi|255764497|r 447 ----NPNLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASI 522 (587)
Q Consensus 447 ----~~~~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~ 522 (587)
....+.++..+....|++++...++++++|+++||||+++|||+||+|+||++|+++|++++|..+++..++.+.-
T Consensus 140 ~~~~~s~~giil~~v~~~~Pf~~~~~~a~l~~i~~~l~EAA~~lGAs~wq~F~~VtLPll~P~i~~g~iL~f~~al~~Fg 219 (291)
T PRK11602 140 LQLMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFG 219 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 32867789999999999999999999999986895899999876999878989864983099999999999999987568
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999850556442237837999999973497989999---9999999999999972157899987
Q gi|255764497|r 523 VSEVASWGHIHLRTTGLGAYIAESTEKGSFPEVVLG---VLIMCCFVLALNRFLWHPLYLYGTR 583 (587)
Q Consensus 523 ~ae~~~~~~~~~~~~GlG~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~ 583 (587)
...++++ +....+..+-.++++..+.+|......+ ..++.++.+.+..++.+|+.|.-||
T Consensus 220 ~v~~l~G-~~~g~T~t~~~~i~~~~~~~~~~~a~~~a~~l~~~~~i~l~l~~~lq~R~~r~~~r 282 (291)
T PRK11602 220 AVSVVSG-SIRGETLSLPLQIELLEQDYNTVGSFTAAALLTLMAIITLFLKSMLQWRLENQEKR 282 (291)
T ss_pred CHHEEEC-CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0431157-99885010699999999812644699999999999999999999999999707888
No 45
>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]
Probab=99.88 E-value=6.9e-20 Score=160.73 Aligned_cols=192 Identities=15% Similarity=0.112 Sum_probs=163.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHH
Q ss_conf 89999999999999999997310000112454366-7899985446677544469999999998315-566504799999
Q gi|255764497|r 378 YVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRP-HISSKIQPFAQLLAAFPANVFFPLVVSCVSY-YHLNPNLWLSLL 455 (587)
Q Consensus 378 ~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~-~~~~~~~~~~~~ 455 (587)
....+..+|+.-+..+..+++.+|.+.++...|.+ +.++.++......-.+|.++........|.. +..+..+..+..
T Consensus 62 ~~~~a~~~Sl~IA~~s~~~s~~lg~~aA~al~r~~~~g~~~~~~l~~~PlvvP~Iv~gi~ll~~f~~~~~~~~~~~ivla 141 (267)
T COG1177 62 RLLSALWNSLLIALLSALLATLLGTLAALALARYRFRGKNLLEGLILLPLVVPDIVTGIALLLLFAALGLPGGFWTIVLA 141 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 89999999999999999999999999999999704026899999997424150999999999999986887529999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999999999999739989999999749887899899985745778999999999999999999998505564422
Q gi|255764497|r 456 MIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGHIHLR 535 (587)
Q Consensus 456 ~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~~~~~~ 535 (587)
+...++||+++.+.+.++++|+++||||+++||++||+||||+||.++|++++|..++|..++.+.+++.++.+++
T Consensus 142 H~~~~lP~v~~~v~a~l~~~d~~L~eAA~dLGAs~~~~f~~V~LP~i~PgIlsg~llaF~~S~Defvit~f~~gp~---- 217 (267)
T COG1177 142 HIVFALPFVVVVVSARLQGFDRSLEEAARDLGASPWQTFRRVTLPLILPGILSGALLAFTLSFDEFVITFFLAGPG---- 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC----
T ss_conf 9999866899999999973896799999876998888989976975279999999999999986778631132899----
Q ss_pred CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 37837999999973497989999999999999999997
Q gi|255764497|r 536 TTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFL 573 (587)
Q Consensus 536 ~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 573 (587)
.+.+..+++.....+..+.+.+...++..+.+++-...
T Consensus 218 ~~TLP~~i~s~~r~~~~P~i~Alstll~~~~~ll~~~~ 255 (267)
T COG1177 218 FTTLPLQIYSMIRRGITPEINALSTLLLLLSLLLILLA 255 (267)
T ss_pred CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87218999998655898199999999999999999999
No 46
>TIGR03262 PhnU2 putative 2-aminoethylphosphonate ABC transport system, permease protein.
Probab=99.88 E-value=4.4e-19 Score=154.90 Aligned_cols=202 Identities=15% Similarity=0.071 Sum_probs=163.7
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCC
Q ss_conf 707406899999999999999999999999999999715026---7899999999974328999999999984014-554
Q gi|255764497|r 55 TLDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRL---GMVLVPILDIMQSIPILGFLTFTVVYFMNLY-PGK 130 (587)
Q Consensus 55 ~~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~---~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~-~~~ 130 (587)
...+.+.++...||+..+..+..++.++|++.+|...|+|.. ++.++.+..++.++|..+.+.-.+..|.... +.+
T Consensus 324 ~~~~~~~~~a~~nSl~la~~aa~i~~~l~~~~ay~i~r~r~~~~~~~~l~~l~~lp~aiPgiVlalg~i~~f~~~~~~l~ 403 (546)
T TIGR03262 324 DLMDGGGWEAYKNSLRLAATTALIGTILVFGGAYLIEKTRGFGLLRGVLRFLAILPMAVPGLVLGLGYIFFFNAPTNPLN 403 (546)
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 75035689999999999999999999999999999998214126799999999853516899999999999852220367
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -2104799999999985359999999999729989999999628882012365552621578999999999999899899
Q gi|255764497|r 131 -VIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVA 209 (587)
Q Consensus 131 -~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~ 209 (587)
.-++....+++......|+.+....++++++|+++||||+++|+|+||+|+||++|+.+|++++|..++|..+.+++.+
T Consensus 404 ~LygT~~iLilay~vr~lp~~~~~i~a~l~qI~~~leeAA~~lGas~~~~~~rI~lPLl~p~ilag~~lvFi~~m~El~~ 483 (546)
T TIGR03262 404 GLYGTMALLVLCTVVHFYTVSHLTAVTALKQIDSEFEAVSASLKVPFYKTFLRVTLPVCLPAILDIARYLFVNSMTTVSA 483 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHEHHHHHHHHHHHHHHHHHHHHHHHHCE
T ss_conf 88889999999999999999899999998748950999998759796667253207802899999999999999987687
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999735444203678899999986311325699999999999999999999
Q gi|255764497|r 210 SEMIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQLLF 260 (587)
Q Consensus 210 ~~~~g~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 260 (587)
..++..++. +.+..++.+..++.+++...+..++++++..+...+..
T Consensus 484 tllL~~~~~----~tl~~~i~~~~~~g~~~~Aaa~s~ilvli~~i~~~l~~ 530 (546)
T TIGR03262 484 VVFLYSPDT----KLASVAILNMDDAGDIAPAAAMATLIVLTSAVAKLLFA 530 (546)
T ss_pred EEEECCCCC----EEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 878739998----02999999986587758899999999999999999999
No 47
>PRK10782 DL-methionine transporter permease subunit; Provisional
Probab=99.87 E-value=4.3e-19 Score=154.96 Aligned_cols=196 Identities=17% Similarity=0.190 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 8999999999999999999999999999997--------15026789999999997432899999999998401455421
Q gi|255764497|r 61 LPQYASRTTLRMLSAMVISLLFTFVYATLAA--------KSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVI 132 (587)
Q Consensus 61 l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~--------~~~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~~~ 132 (587)
+.+.+++|+...+.++.++.++|+|+|.+.+ .+++.++.+...+++.+++|.+++......++.... +...
T Consensus 9 ll~g~~~Tl~mt~~s~~~~~iiglplGi~l~~~~~~~~~~~~~l~~~~~~~i~~~R~iP~lv~l~~~~~~~~~~~-g~~~ 87 (217)
T PRK10782 9 LVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSAVVNIFRSIPFIILLVWMIPFTRVIV-GTSI 87 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCC
T ss_conf 999999999999999999999999999999973202244346899999999999950689999999999999984-4662
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 04799999999985359999999999729989999999628882012365552621578999999999999899899999
Q gi|255764497|r 133 GAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEM 212 (587)
Q Consensus 133 ~~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~ 212 (587)
+..+.++.+.....|++...++++++++|++..|||+++|+|+||.++|+.+|+++|.++.+....+....++......
T Consensus 88 -g~~aaiiaL~i~~~~~iar~~~~~i~~V~~g~~EAa~alG~s~~q~i~~viLPqAlp~ii~~~~~~~i~~i~~tsl~g~ 166 (217)
T PRK10782 88 -GLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGA 166 (217)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -1689999999999899999999999839987999999839898899485107921999999999999999999999999
Q ss_pred HHCCCCCHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 735444203678899999-986311325699999999999999999999898754
Q gi|255764497|r 213 IVVGDTVIPLPGIGSYIA-LAIKEQDLLAILYAMLTMLGVIFLYDQLLFRPMIVW 266 (587)
Q Consensus 213 ~g~~~~~~~~~g~g~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 266 (587)
+|.+ |+|.... ...+..|........+++.+++.+. +....++.++
T Consensus 167 IG~g-------gLG~~a~~~~~~~~~~~~~~~v~~l~~ilv~~i-~~~~~~l~k~ 213 (217)
T PRK10782 167 VGAG-------GLGQIGYQYGYIGYNATVMNTVLVLLVILVYLI-QFAGDRIVRA 213 (217)
T ss_pred HCCC-------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_conf 8104-------789999999998515109999999999999999-9999999998
No 48
>PRK10998 malG maltose transporter permease; Provisional
Probab=99.87 E-value=3.8e-18 Score=148.16 Aligned_cols=204 Identities=18% Similarity=0.077 Sum_probs=150.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCHH--H
Q ss_conf 68999999999999999999999999999997150267-8999999999743289999999999840-145542104--7
Q gi|255764497|r 60 SLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLG-MVLVPILDIMQSIPILGFLTFTVVYFMN-LYPGKVIGA--E 135 (587)
Q Consensus 60 ~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~~-~~~~~~l~~~~~iP~~~~~~~~~~~f~~-~~~~~~~~~--~ 135 (587)
.+.+..+||+..+..++++++++|.+.||..+|.++++ +.+...+.....+|+.+........+.. +...+.++. .
T Consensus 80 ~~~~~~~NSl~va~~~~v~~l~~~~~aaYalar~~f~g~~~l~~~~l~~~~iP~~~~~ip~~~~~~~lgl~~~~~~l~t~ 159 (296)
T PRK10998 80 PVLLWLWNSVKIAGITAIGIVALSTTCAYAFARMRFPGKATLLKGMLIFQMFPAVLSLVALYALFDRLGQYIPFIGLNTH 159 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 78999999999999999999999999999873121555899999999999988999999999999996020220133224
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999985359999999999729989999999628882012365552621578999999999999899899999735
Q gi|255764497|r 136 LAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVV 215 (587)
Q Consensus 136 ~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~ 215 (587)
.+.++.. ....|..++..++.++++|+|+||||+.+|||+||.||||++|+++|++.+..+++|..+|+++..+..+..
T Consensus 160 ~~ii~~~-~~~~~~~i~ll~~ff~~iP~el~EAA~iDGas~~~~f~~IilPl~~P~i~t~~i~~fi~~WNef~~~ll~l~ 238 (296)
T PRK10998 160 GGVIFAY-LGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLR 238 (296)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999-999999999999998629798999999859977779787678625999999999999999999999999908
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44420367889999998631132569999999999999999999989875
Q gi|255764497|r 216 GDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQLLFRPMIV 265 (587)
Q Consensus 216 ~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 265 (587)
..+..+. ..+.+.....++.+.+...++.++..+=.+++....+|+..+
T Consensus 239 ~~~~~tl-~v~l~~~~~~~~~~~g~~~A~~~i~~lP~lI~f~~~qr~~i~ 287 (296)
T PRK10998 239 DVNSYTL-AVGMQQYLNPQNYLWGDFAAAAVLSALPITLVFLLAQRWLVG 287 (296)
T ss_pred CCCCEEH-HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9543009-999999866235649999999999999999999999999997
No 49
>PRK10782 DL-methionine transporter permease subunit; Provisional
Probab=99.87 E-value=3e-19 Score=156.13 Aligned_cols=198 Identities=13% Similarity=0.089 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH--------HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCC
Q ss_conf 8999999999999999999731000011245--------4366789998544667754446999999999831---5566
Q gi|255764497|r 378 YVIWLGCITMFRVVVLIIIASIIWIPVGIWI--------GFRPHISSKIQPFAQLLAAFPANVFFPLVVSCVS---YYHL 446 (587)
Q Consensus 378 ~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~---~~~~ 446 (587)
.+......|+..+..+..++.++|+++|... ..++..++......+.++++|..++.......+. ....
T Consensus 8 lll~g~~~Tl~mt~~s~~~~~iiglplGi~l~~~~~~~~~~~~~l~~~~~~~i~~~R~iP~lv~l~~~~~~~~~~~g~~~ 87 (217)
T PRK10782 8 LLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSAVVNIFRSIPFIILLVWMIPFTRVIVGTSI 87 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999999999999999999999732022443468999999999999506899999999999999844662
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 50479999999999999999999999739989999999749887899899985745778999999999999999999998
Q gi|255764497|r 447 NPNLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEV 526 (587)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~ 526 (587)
+ ..+.++...+.+.+|+.+.+.+|++++|++..|||+++|+|+||++|||++|+++|+++.+..+.+....+....+-+
T Consensus 88 g-~~aaiiaL~i~~~~~iar~~~~~i~~V~~g~~EAa~alG~s~~q~i~~viLPqAlp~ii~~~~~~~i~~i~~tsl~g~ 166 (217)
T PRK10782 88 G-LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGA 166 (217)
T ss_pred C-HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1-689999999999899999999999839987999999839898899485107921999999999999999999999999
Q ss_pred HCCCCCCCCCCCHHHHH-HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 50556442237837999-99997349798999999999999999999721578999876
Q gi|255764497|r 527 ASWGHIHLRTTGLGAYI-AESTEKGSFPEVVLGVLIMCCFVLALNRFLWHPLYLYGTRC 584 (587)
Q Consensus 527 ~~~~~~~~~~~GlG~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~r 584 (587)
+|.| |+|... ..+.+.+|++.++..++++.+++..++.+ -+|+.|+.+||
T Consensus 167 IG~g-------gLG~~a~~~~~~~~~~~~~~~v~~l~~ilv~~i~~~-~~~l~k~~~~r 217 (217)
T PRK10782 167 VGAG-------GLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFA-GDRIVRAVTHK 217 (217)
T ss_pred HCCC-------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCC
T ss_conf 8104-------789999999998515109999999999999999999-99999986379
No 50
>PRK09500 potC spermidine/putrescine ABC transporter membrane protein; Reviewed
Probab=99.87 E-value=1e-19 Score=159.60 Aligned_cols=198 Identities=15% Similarity=0.019 Sum_probs=156.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHH
Q ss_conf 889999999999999999997310000112454366-7899985446677544469999999998315-56650479999
Q gi|255764497|r 377 LYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRP-HISSKIQPFAQLLAAFPANVFFPLVVSCVSY-YHLNPNLWLSL 454 (587)
Q Consensus 377 ~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~-~~~~~~~~~~~ 454 (587)
...+.+..+|+..+..+..++.++|.+.++...+.+ +.++.+.........+|..+........+.. +.....+..+.
T Consensus 54 ~~~~~~~~nSl~ia~~~~~~~~~lg~~~A~~l~r~~~~~~~~~~~l~~~p~~~P~~v~~i~l~~~~~~~g~~~~~~~lil 133 (257)
T PRK09500 54 DSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQLGFWSLLF 133 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 37999999999999999999999999999999752677456999999999997999999999999997351320999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999999999999999973998999999974988789989998574577899999999999999999999850556442
Q gi|255764497|r 455 LMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGHIHL 534 (587)
Q Consensus 455 ~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~~~~~ 534 (587)
.+....+|+.++...++++++|+|+|||||++|||+||+||||++|+++|++++|..++|..+|++...+-++++++.+
T Consensus 134 ~~~~~~lP~~~~~i~~~l~~i~~~l~EAA~~lGAs~~~~f~~VilPl~~P~i~~~~il~F~~s~~ef~~~~~l~g~~~~- 212 (257)
T PRK09500 134 AHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEVTILRKIILPLAMPAVAAGWLLSFTLSMDDVVVSSFVTGPSYE- 212 (257)
T ss_pred HHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE-
T ss_conf 8888515027999999997179699999987299987963631298479999999999999999999999975289960-
Q ss_pred CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 237837999999973497989999999999999999997215789
Q gi|255764497|r 535 RTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFLWHPLYL 579 (587)
Q Consensus 535 ~~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 579 (587)
.+...+++..+.++.+...+...++.++.+.+..+ .|++.|
T Consensus 213 ---tlp~~i~~~~~~~~~~~~~Ala~il~~i~~~~~~l-~~~l~r 253 (257)
T PRK09500 213 ---ILPLKIYSMVKVGVSPEVNALATILLVLSLVLVIL-SQLLAR 253 (257)
T ss_pred ---EHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHC
T ss_conf ---28999999987378759999999999999999999-999866
No 51
>COG1178 ThiP ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=5e-19 Score=154.52 Aligned_cols=199 Identities=19% Similarity=0.144 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCHHH
Q ss_conf 0689999999999999999999999999999971502-6789999999997432899999999998401455--421047
Q gi|255764497|r 59 HSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRR-LGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPG--KVIGAE 135 (587)
Q Consensus 59 ~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~-~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~--~~~~~~ 135 (587)
.+.|+.+.||+..+..+..+++++|++++|...|.+. .++.++....+..++|..+.+.-.+..|...... +..++.
T Consensus 329 ~~~~~a~~nSl~~a~~aa~l~~~~~l~~a~~~~r~~~~~~~~~~~l~~l~~avPG~Vla~g~l~~~~~~~~~~~~~~~t~ 408 (540)
T COG1178 329 PQFWQALLNSLLLALAAALLAVVLALLLAYAVRRLRSRLSRLLERLSMLPLAVPGVVLALGLLLLFRAPDGLLYQPLYTL 408 (540)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHCCCHHHH
T ss_conf 88999999999999999999999999999999973234889999998878633699999999999851220000305689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999985359999999999729989999999628882012365552621578999999999999899899999735
Q gi|255764497|r 136 LAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVV 215 (587)
Q Consensus 136 ~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~ 215 (587)
...+.+.....+|+.......+++++|+++||||+++|+++||++++|++|+++|++.++..++|..+.+++.+..+++.
T Consensus 409 ~ilv~a~~~~~~p~a~r~~~a~l~qi~~~leeaa~sLG~~~~~~~~~I~lPll~p~l~~a~~l~F~~s~~Elsat~lL~~ 488 (540)
T COG1178 409 LILVLAYALRFLPFAVRSLRAALRQIDPSLEEAARSLGASGLRRFRRITLPLLRPGLLAAAALVFALSIGELSATLLLGS 488 (540)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECC
T ss_conf 99999999999889999999999877974999998859978779899878730588999999999999755376878638
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4442036788999999863113256999999999999999999998
Q gi|255764497|r 216 GDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQLLFR 261 (587)
Q Consensus 216 ~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 261 (587)
++. +++..++.+..++.+++...+....++++..+......+
T Consensus 489 ~~~----~TL~~~iy~~~~~~~~~~Aaa~a~il~~~~~~~~~~~~~ 530 (540)
T COG1178 489 PGT----RTLTVYIYNLLSDGRYGDAAALALILLVVSLLLFLLLDR 530 (540)
T ss_pred CCC----EEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 996----109999999803611688899999999999999999999
No 52
>PRK09433 thiP thiamine transporter membrane protein; Reviewed
Probab=99.87 E-value=3.4e-18 Score=148.43 Aligned_cols=206 Identities=12% Similarity=0.007 Sum_probs=160.2
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 668707406899999999999999999999999999999715-----026789999999997432899999999998401
Q gi|255764497|r 52 VPITLDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKS-----RRLGMVLVPILDIMQSIPILGFLTFTVVYFMNL 126 (587)
Q Consensus 52 ~~~~~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~-----~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~ 126 (587)
......+.+.|+..+||+..+..+..+++.+|+++++...+. ++.++.++....++..+|..+.+.-....+...
T Consensus 318 ~~~~~~~~~~~~a~~nSl~iA~~aa~la~~lal~la~~~~~~~~r~~~~~~~~l~~~~~lplaiPgiVlg~Gl~ll~~~~ 397 (536)
T PRK09433 318 LPEVLAQPALWQALWTSLRIALLAALLAVLLAMALLLSSRELRLRQKALAAQALELSGMLILAMPGLVLATGLFLLLRNF 397 (536)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 57762538899999999999999999999999999999999998501068899999999887332999999999998620
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45542104799999999985359999999999729989999999628882012365552621578999999999999899
Q gi|255764497|r 127 YPGKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFF 206 (587)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~ 206 (587)
... ......-.+++......|+++.....+++++|+++||+|+++|+++||+|++|++|+.+|++.++..++|..+.+|
T Consensus 398 ~~~-~~~~~~ivil~~~l~~lP~a~r~l~~~l~~i~~~le~aA~sLGas~~~~f~~I~lPll~p~i~~a~~l~F~~smgE 476 (536)
T PRK09433 398 TDL-PQSALGIVILVNALMALPYALRVLEPPMRDIAARYGRLCQSLGIRGWSRLRLVEWRALRRPLAQAFAFACALSLGD 476 (536)
T ss_pred CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 245-6889999999999999999999999999970175999998869998789698539830999999999999999875
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999973544420367889999998631132569999999999999999999989
Q gi|255764497|r 207 VVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQLLFRP 262 (587)
Q Consensus 207 ~~~~~~~g~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 262 (587)
+.+..+++.++. +++-.++.+..++.+++.+.+..+++++++.....+..|.
T Consensus 477 l~a~~ll~~~~~----~TLp~~iy~~~~~~~~~~Aa~~allL~ll~~~~f~l~er~ 528 (536)
T PRK09433 477 FGVIALFGSQDF----RTLPYLLYQQLGSYRSQDAAVTALLLLLLCLLLFTLIERL 528 (536)
T ss_pred HCHHHEECCCCC----CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 370213339998----6189999998727676889999999999999999999986
No 53
>PRK10561 glycerol-3-phosphate transporter permease; Provisional
Probab=99.87 E-value=4.9e-18 Score=147.33 Aligned_cols=244 Identities=14% Similarity=0.071 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCC-----CCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 9999999999999999864102-----33135203668707406899999999999999999999999999999715026
Q gi|255764497|r 22 LLAFVLVIGIINILLHGIQETT-----VPRDIVDIVPITLDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRL 96 (587)
Q Consensus 22 ~~~~~~v~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~ 96 (587)
+...+.+.+.......++..+. ..+...+++....++...++..+||+...+.+..++.++|+.+|.+..+..+.
T Consensus 9 ~~~~f~~~P~~~~~~~Sf~~~~~~~~~~~fvGl~Ny~~l~~d~~f~~~~~ntl~~~~~~~~~~~~l~l~lA~ll~~~~~~ 88 (280)
T PRK10561 9 ITVIFFIWPAGEALWYSLQSVDPFGFSSQFVGLDNFVALFHDSYYLDSFWTTIKFSALVTVSGLLVSLFFAALVDYVVRG 88 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 99999999999999999506878789986545999999987977999999999999999999999999999998610207
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------CCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7899999999974328999999999984014------------554210----479999999998535999999999972
Q gi|255764497|r 97 GMVLVPILDIMQSIPILGFLTFTVVYFMNLY------------PGKVIG----AELAAIFAIFTSQVWNMTFSMYQSLCN 160 (587)
Q Consensus 97 ~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~------------~~~~~~----~~~~~i~~~~~~~~~~i~~~~~~~l~~ 160 (587)
++..+.++.++..+|+.+.+..+...|.... ..+... .....+++..-...|+..+...+++++
T Consensus 89 ~~~~r~~~~lP~~i~~vv~~~~w~~l~~~~~G~~n~~l~~~g~~~~~~~~~~~a~~~vi~~~vW~~~g~~~li~lagL~~ 168 (280)
T PRK10561 89 SRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGYDWNHAQNSGQAMFLVVFASVWKQISYNFLFFYAALQS 168 (280)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 89999999987553199999999999698710899999865777754467489999999999999989999999999857
Q ss_pred CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCHHHHHHHHHHH-HHHHHCCH
Q ss_conf 9989999999628882012365552621578999999999999-899899999735444203678899999-98631132
Q gi|255764497|r 161 IPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGG-WFFVVASEMIVVGDTVIPLPGIGSYIA-LAIKEQDL 238 (587)
Q Consensus 161 i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~-~~~~~~~~~~g~~~~~~~~~g~g~~~~-~~~~~~~~ 238 (587)
+|+|++|||+.+|||+||+||+|++|+.+|.+.....+.+..+ ...+........|........+..++. ++..+.|.
T Consensus 169 Ip~~l~EAA~iDGA~~~q~f~~ItlPll~p~~~~~~i~~~i~~~~~~f~~i~~~t~GGP~~~t~~l~~~iy~~~f~~~~~ 248 (280)
T PRK10561 169 IPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYAFFDTFPVIDAATSGGPVQATTTLIYKIYREGFTGLDL 248 (280)
T ss_pred CCHHHHHHHHHCCCCHHHEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCH
T ss_conf 99779999997699775233123046105999999999999999965688864368888528899999999999875996
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 569999999999999999999989875
Q gi|255764497|r 239 LAILYAMLTMLGVIFLYDQLLFRPMIV 265 (587)
Q Consensus 239 ~~~~~~~~~i~~~~~~~~~~~~~~~~~ 265 (587)
+.+.+...++.++..++.....|...|
T Consensus 249 g~asA~svil~~i~~~~~~i~~r~~~r 275 (280)
T PRK10561 249 SSSAAQSVVLMFLVIVLTVVQFRYVES 275 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 199999999999999999999999832
No 54
>cd06261 TM_PBP2 Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. F
Probab=99.86 E-value=6.2e-19 Score=153.82 Aligned_cols=175 Identities=23% Similarity=0.310 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHH
Q ss_conf 9999999999999999999999999971502-67899999999974328999999999984014554-210479999999
Q gi|255764497|r 65 ASRTTLRMLSAMVISLLFTFVYATLAAKSRR-LGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGK-VIGAELAAIFAI 142 (587)
Q Consensus 65 ~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~-~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~-~~~~~~~~i~~~ 142 (587)
++||+..++.++.++.++|+++|++.++++. .++.++.+..++.++|+++.......+|+...... ........+...
T Consensus 1 l~nSl~i~~~~~~i~~~ig~~~a~~~~~~~~~~~~~~~~~~~i~~~iP~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 80 (190)
T cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILA 80 (190)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 98799999999999999999999999951850889999999999980399999999999984123221478999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 99853599999999997299899999996288820123655526215789999999999998998999997354442036
Q gi|255764497|r 143 FTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPL 222 (587)
Q Consensus 143 ~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~ 222 (587)
.....|++....+++++++|+|++||||++|+|+||+|||+++|.++|+++++..+.|..+++++..++.++.+.....
T Consensus 81 ~~~~~p~~~~~~~~~l~~i~~~~~eaA~~~Ga~~~~~~~~i~lP~~~p~i~~~~~l~~~~~~~~~~~~~~l~~~~~~~~- 159 (190)
T cd06261 81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGP- 159 (190)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-
T ss_conf 9999999999999999838999999999869973465699879963999999999999999999999999968999968-
Q ss_pred HHHHHHHHHHH-HHCCHHHH
Q ss_conf 78899999986-31132569
Q gi|255764497|r 223 PGIGSYIALAI-KEQDLLAI 241 (587)
Q Consensus 223 ~g~g~~~~~~~-~~~~~~~~ 241 (587)
+.+.+..... ...+.+..
T Consensus 160 -~~~~~~~~~~~~~~~~~~~ 178 (190)
T cd06261 160 -GTGLLLIFAILFPGDLGVA 178 (190)
T ss_pred -CHHHHHHHHHHHCCCHHHH
T ss_conf -3999999999875786999
No 55
>PRK10683 putrescine transporter subunit: membrane component of ABC superfamily; Provisional
Probab=99.86 E-value=8.2e-19 Score=152.94 Aligned_cols=197 Identities=10% Similarity=0.057 Sum_probs=151.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------
Q ss_conf 8899999999999999999973100001124543667-899985446677544469999999998315------------
Q gi|255764497|r 377 LYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRPH-ISSKIQPFAQLLAAFPANVFFPLVVSCVSY------------ 443 (587)
Q Consensus 377 ~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~------------ 443 (587)
...+....+|+..+..+++++.++|+|.++.+.|.+. .++.+.........+|..+-.......++.
T Consensus 93 ~~y~~a~~nSL~iA~~sT~i~lliG~P~Ay~iar~~~~~r~~l~~lvilP~~~s~lVr~~aw~~iL~~~G~ln~~L~~lG 172 (317)
T PRK10683 93 PLYFDAYLQSLQVAAISTICCLLIGYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKNNGVLNNFLLWLG 172 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf 78999999999999999999999999999999938861789999999999706799999999999731434878999960
Q ss_pred ------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ------56650479999999999999999999999739989999999749887899899985745778999999999999
Q gi|255764497|r 444 ------YHLNPNLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGA 517 (587)
Q Consensus 444 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a 517 (587)
....+..+.++..+...+|+++....++++++|++++|||+++||++||+|+||++|+++|++++|..+.|..+
T Consensus 173 li~~pl~ll~t~~aViig~v~~~lPfmvL~l~a~L~~id~~L~EAA~~LGAs~~~~F~~VtLPL~~PGIiag~lLvFi~a 252 (317)
T PRK10683 173 VIDQPLTILHTNLAVYIGIVYAYLPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPA 252 (317)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 44676322564589999999999999999999999858908999998769986554002320621899999999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999850556442237837999999-97349798999999999999999999721578
Q gi|255764497|r 518 WNASIVSEVASWGHIHLRTTGLGAYIAES-TEKGSFPEVVLGVLIMCCFVLALNRFLWHPLY 578 (587)
Q Consensus 518 ~~~~~~ae~~~~~~~~~~~~GlG~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 578 (587)
+.+.+..+++|+++ +.-+|..+++. .++.|++...+..+++.++.++...++ +|.+
T Consensus 253 ~g~F~iP~lLGG~~----~~~i~~~i~~~f~~~~dwp~aaAlavvLl~i~iv~~~~~-~r~~ 309 (317)
T PRK10683 253 VGEFVIPELLGGPD----SIMIGRVLWQEFFNNRDWPVASAVAIIMLLLLIVPIMWF-HKHQ 309 (317)
T ss_pred HHHHHHHHHHCCCC----CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_conf 88877686642998----562999999999874680589999999999999999999-9998
No 56
>PRK10973 glycerol-3-phosphate transporter membrane protein; Provisional
Probab=99.85 E-value=1.3e-17 Score=144.18 Aligned_cols=201 Identities=16% Similarity=0.103 Sum_probs=151.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCHHHH
Q ss_conf 068999999999999999999999999999997150267-89999999997432899999999998-4014554210479
Q gi|255764497|r 59 HSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLG-MVLVPILDIMQSIPILGFLTFTVVYF-MNLYPGKVIGAEL 136 (587)
Q Consensus 59 ~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~~-~~~~~~l~~~~~iP~~~~~~~~~~~f-~~~~~~~~~~~~~ 136 (587)
...++...||+..++.+++++++++.+.||..+|.|+++ +.+...+....++|..+........+ ..+.. .+..
T Consensus 71 ~~f~~~~~NSliva~~~~~~~~~~~~~aaYalsr~~f~~~~~~~~~~l~~~~iP~~~~~iP~~~~~~~lgl~----~t~~ 146 (281)
T PRK10973 71 APFGRMLLNSFVMAFSITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKML----DSYA 146 (281)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCHH
T ss_conf 159999999999999999999999999999999840541999999999999989999999999999993971----1089
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999853599999999997299899999996288820123655526215789999999999998998999997354
Q gi|255764497|r 137 AAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVG 216 (587)
Q Consensus 137 ~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~~ 216 (587)
+.+.. ....+.-....++-++++|+|+||||+.+|||+||.|+||.+|+++|++.+..+..|..+|+|+..|..+...
T Consensus 147 glil~--~~~~~~~i~l~~~f~~~IP~el~EAA~iDGas~~~~f~~IilPl~kP~i~tv~i~~fi~~WNef~~p~~~~~~ 224 (281)
T PRK10973 147 GLTLP--LMASATATFLFRQFFMTLPDELVEAARIDGAGPMRFFWDIVLPLSKTNLAALFVITFIYGWNQYLWPLLITTD 224 (281)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999--9999999999999997688889999998198677781541002659999999999999999979877886278
Q ss_pred CCCHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 442036-7889999998631132569999999999999999999989875
Q gi|255764497|r 217 DTVIPL-PGIGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQLLFRPMIV 265 (587)
Q Consensus 217 ~~~~~~-~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 265 (587)
.+.... .++.....++....|++..+++.+...+-.+++....+|+..+
T Consensus 225 ~~~~t~~~~l~~~~~~~~~~~~~~~~~A~~vl~~lP~li~y~~~Qk~~i~ 274 (281)
T PRK10973 225 ASLGTAVAGIKGMIATGEGTTEWNQVMAAMLLTLIPPVVIVLAMQRAFVR 274 (281)
T ss_pred CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 53011999999998546776359999999999999999999999999999
No 57
>PRK09497 potB spermidine/putrescine ABC transporter membrane protein; Reviewed
Probab=99.84 E-value=5e-19 Score=154.53 Aligned_cols=204 Identities=7% Similarity=0.033 Sum_probs=150.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----------
Q ss_conf 89999999999999999997310000112454366-789998544667754446999999999831556-----------
Q gi|255764497|r 378 YVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRP-HISSKIQPFAQLLAAFPANVFFPLVVSCVSYYH----------- 445 (587)
Q Consensus 378 ~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~----------- 445 (587)
..+....+|+..+..+.+++.++|.+.++...+.+ +.++.+.........+|..+........++..+
T Consensus 60 ~~~~~l~nSl~~a~~~tvi~~~ig~~~A~~l~~~~~~~r~~~~~l~~~P~~~p~~v~~~~~~~~~~~~G~ln~~l~~lg~ 139 (285)
T PRK09497 60 LYAEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLGTKGYLNEFLLWLGV 139 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
T ss_conf 99999999999999999999999999888630167543899999999999879999999999981433078899998157
Q ss_pred -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -------6504799999999999999999999997399899999997498878998999857457789999999999999
Q gi|255764497|r 446 -------LNPNLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAW 518 (587)
Q Consensus 446 -------~~~~~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~ 518 (587)
..+..+.++.++...+|+.+....++++++|+|++|||+++|||+||+||||++|+++|++++|..+.+..++
T Consensus 140 ~~~p~~~l~~~~~vii~~v~~~lPf~~l~l~a~l~~i~~~l~EAA~~lGAs~~~~F~~I~lPl~~Pgi~~~~il~fi~s~ 219 (285)
T PRK09497 140 IDTPIRIMFTESAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAM 219 (285)
T ss_pred CCCCHHHHCCHHHHHHHHHEEECHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHEEHHEEEHHHHHHHHHHHHHHHHHHH
T ss_conf 56623542349888787531312067743787884089689999987599978913202208108999999999999998
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999850556442237837999999-9734979899999999999999999972157899987633
Q gi|255764497|r 519 NASIVSEVASWGHIHLRTTGLGAYIAES-TEKGSFPEVVLGVLIMCCFVLALNRFLWHPLYLYGTRCLR 586 (587)
Q Consensus 519 ~~~~~ae~~~~~~~~~~~~GlG~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~r~~ 586 (587)
.+.....++++++ +.-++..++++ .+..|++...+..+++.++..++ .++..|..|+.+||-+
T Consensus 220 ~~F~~~~~lgG~~----~~~l~~~i~~~~~~~~~~~~aaA~svil~~i~~~~-~~i~~r~~k~~~kk~~ 283 (285)
T PRK09497 220 GMFYVSDLLGGAK----NLLIGNVIKSQFLNIRDWPFGAATSITLTIVMGLM-LLVYYRASKLLNKKVE 283 (285)
T ss_pred HHHHEEEECCCCC----CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHC
T ss_conf 8762100104897----55299999999987069069999999999999999-9999999999530141
No 58
>COG1175 UgpA ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]
Probab=99.84 E-value=1.5e-16 Score=136.48 Aligned_cols=220 Identities=12% Similarity=0.072 Sum_probs=165.4
Q ss_pred CCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 13520366870740689999999999999999999999999999971502678999999999743289999999999840
Q gi|255764497|r 46 RDIVDIVPITLDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMN 125 (587)
Q Consensus 46 ~~~~~~~~~~~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~ 125 (587)
+....++....+++..|+.+.||+...+.+..+..++|..+|.+..+..+.++.++.++.++..+|+.+.+..+...|..
T Consensus 51 fvGl~Ny~~l~~d~~f~~al~nT~~~~~~~v~~~~~lgl~lAlll~~~~~g~~~~r~~~~lP~~~~~vv~~~iw~~l~~~ 130 (295)
T COG1175 51 FVGLANYERLFSDPTFWNALKNTLVFTVISVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWAISSVVAGLIWKWLFNP 130 (295)
T ss_pred CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 63589999997384799999999999999999999999999999847044799999999999899999999999999887
Q ss_pred C-C------------C-CCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 1-4------------5-542104----79999999998535999999999972998999999962888201236555262
Q gi|255764497|r 126 L-Y------------P-GKVIGA----ELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPF 187 (587)
Q Consensus 126 ~-~------------~-~~~~~~----~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~ 187 (587)
. + + .+.+.. ..+.+++..=...|++.....+|++++|+|+.|||+..||++||+||||++|+
T Consensus 131 ~~G~~n~~l~~~gl~~~~~wl~~~~~A~~~iii~~vW~~~~f~mli~lAgLq~Ip~~lyEAA~iDGA~~~q~f~~ItlP~ 210 (295)
T COG1175 131 SFGLLNSLLLLLGLIPDINWLSDPNTALFAVIIVSVWKGTGFVMLLFLAGLQSIPKELYEAARIDGASPWQRFRKITLPL 210 (295)
T ss_pred CCHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 63589999998057555634139069999999999999984999999999956999999999589996436545410441
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1578999999999999899899999735444203678899999986-31132569999999999999999999989875
Q gi|255764497|r 188 SMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAI-KEQDLLAILYAMLTMLGVIFLYDQLLFRPMIV 265 (587)
Q Consensus 188 ~~P~i~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 265 (587)
.+|.+.....+.+..+++.|..+-.+..|+.......+..++.+.. +..|.+.+.+...++.+++..+.....+...+
T Consensus 211 l~p~i~~~~i~~~i~~~~~Fd~i~~lT~GGP~~~T~~l~~~~y~~af~~~~~G~asA~avil~~i~~~~~~~~~~~~~~ 289 (295)
T COG1175 211 LRPVIFFVLILRTIFAFQVFDLIYLLTGGGPGNATTTLAYYIYRTAFGGLDFGYAAAIAVILFLIVLILTVVQLRLLRR 289 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0279999999999999997369999807999622559999999998700666489999999999999999999999874
No 59
>PRK11275 pstC phosphate transporter permease subunit; Provisional
Probab=99.84 E-value=9.4e-17 Score=138.01 Aligned_cols=212 Identities=17% Similarity=0.163 Sum_probs=155.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------
Q ss_conf 406899999999999999999999999999999715--0267899999999974328999999999984014--------
Q gi|255764497|r 58 VHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKS--RRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLY-------- 127 (587)
Q Consensus 58 ~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~--~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~-------- 127 (587)
..+....+..|+...+.+.+++..+|+..|+....+ ++.++.+++.++++..+|++++....+..+.+..
T Consensus 68 ~~Gi~~~i~GTl~~s~iAllia~Plgi~~Aiyl~eya~~~~~~~l~~~ielLagIPSVV~Gl~Gl~v~~p~~~~~~~~~~ 147 (319)
T PRK11275 68 IYGALVPIYGTLVTSFIALLIAVPVSFGIALFLTELAPGWLKRPLGIAIELLAAIPSIVYGMWGLFVFAPLFATYFQEPV 147 (319)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77829999999999999999999999999999999766858989999999982175899999999999999998754556
Q ss_pred --------------C-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf --------------5-5421047999999999853599999999997299899999996288820123655526215789
Q gi|255764497|r 128 --------------P-GKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGL 192 (587)
Q Consensus 128 --------------~-~~~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i 192 (587)
. .+...+....-++......|.+.....|+++++|++++|++..+|++|||+.+||.+|.++|++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~G~s~l~a~i~LaiMilP~i~s~s~eal~~VP~~~reaa~ALGatrw~ti~~VvlP~a~~GI 227 (319)
T PRK11275 148 GNILSNIPIVGALFSGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGV 227 (319)
T ss_pred HHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 54412104677761477644028999999999999999999999999688999999998399799999999999888689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHH-------HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999899899999735444203-------678899999986311----3256999999999999999999998
Q gi|255764497|r 193 VWNMMMSMSGGWFFVVASEMIVVGDTVIP-------LPGIGSYIALAIKEQ----DLLAILYAMLTMLGVIFLYDQLLFR 261 (587)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~g~~~~~~~-------~~g~g~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~ 261 (587)
++|.++.++.+.++-++..+..++..... ..++-..+....... +....++..+++ .++..+.....+
T Consensus 228 ~~gviLg~gRAlGETmaV~mv~Gn~~~~~~~~lf~p~~Tlts~Ia~~~~ea~~g~~~~al~a~glvL-fvit~i~N~~a~ 306 (319)
T PRK11275 228 IGGVMLGLGRALGETMAVTFIIGNTYQLDSASLYMPGNSITSALANEFAEAESGLHTAALMELGLIL-FVITFIVLAASK 306 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_conf 9999999999998899999992787668987645655089999999631357748999999999999-999999999999
Q ss_pred HHHHHHHHH
Q ss_conf 987544432
Q gi|255764497|r 262 PMIVWSNKF 270 (587)
Q Consensus 262 ~~~~~~~~~ 270 (587)
...++.+|+
T Consensus 307 ~iv~R~~k~ 315 (319)
T PRK11275 307 LMIMRLAKN 315 (319)
T ss_pred HHHHHHHHH
T ss_conf 999998752
No 60
>PRK11268 pstA phosphate transporter permease subunit; Provisional
Probab=99.83 E-value=6.3e-17 Score=139.25 Aligned_cols=157 Identities=16% Similarity=0.117 Sum_probs=132.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 7406899999999999999999999999999999715---0267899999999974328999999999984014554210
Q gi|255764497|r 57 DVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKS---RRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVIG 133 (587)
Q Consensus 57 ~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~---~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~~~~ 133 (587)
+.++....+..|+.....+.+++..+|+..|+....+ ++..+.++...+.+..+|++++......++..... ..
T Consensus 75 ~~gGi~~aivGTl~~~~~a~lia~Pigi~~aIyL~Eya~~~~~~~~ir~~i~~LagiPSIV~Glfg~~~~v~~~~---~~ 151 (292)
T PRK11268 75 EGGGLANAIAGSGLLILWATVVGTPLGIMAGIYLAEYGRKSWLAEVIRFINDILLSAPSIVVGLFVYTIVVAQME---HF 151 (292)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH---HH
T ss_conf 887669999999999999999999999999999999768643999999999998427489999999999998521---25
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 47999999999853599999999997299899999996288820123655526215789999999999998998999997
Q gi|255764497|r 134 AELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMI 213 (587)
Q Consensus 134 ~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~ 213 (587)
+..+...+......|.+...+.|+++++|++++|++..+|++|||+.+||.+|.++|++++|.+++++.+.++.....+.
T Consensus 152 s~lag~l~LaimilP~i~~~teeaL~~VP~~lreaa~ALGatkw~ti~~VvlP~A~~GI~tgviLaiaRa~GETApll~t 231 (292)
T PRK11268 152 SGWAGVIALALLQVPIVIRTTENMLKLVPDSLREAAYALGTPKWKMISAITLKASVSGIMTGVLLAIARIAGETAPLLFT 231 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 57899999999999999999999999599889999998799865762237607637799999999999999879999999
Q ss_pred HCC
Q ss_conf 354
Q gi|255764497|r 214 VVG 216 (587)
Q Consensus 214 g~~ 216 (587)
+.+
T Consensus 232 a~~ 234 (292)
T PRK11268 232 ALS 234 (292)
T ss_pred HHC
T ss_conf 833
No 61
>pfam00528 BPD_transp_1 Binding-protein-dependent transport system inner membrane component. The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Probab=99.83 E-value=2.7e-18 Score=149.25 Aligned_cols=178 Identities=28% Similarity=0.359 Sum_probs=149.4
Q ss_pred CCCCHHHH--HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 00112454--36678999854466775444699999999983155665-0479999999999999999999999739989
Q gi|255764497|r 402 IPVGIWIG--FRPHISSKIQPFAQLLAAFPANVFFPLVVSCVSYYHLN-PNLWLSLLMIFGTQWYILFNVIAGASAFPND 478 (587)
Q Consensus 402 ~~~~~~~~--~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~gl~~i~~~ 478 (587)
+++|...+ ++++.++.+.+..+..+++|..++.+.....+.....+ .....+........++...+..++++++|++
T Consensus 2 v~lG~~~a~~~~~~~d~~~~~~~~~~~~iP~~~l~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (183)
T pfam00528 2 IPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVISILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSD 81 (183)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 86999999507858999999999999983499999999999842366789999999999999999999999999706899
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHH
Q ss_conf 99999974988789989998574577899999999999999999999850556442237837999999973497989999
Q gi|255764497|r 479 FKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGHIHLRTTGLGAYIAESTEKGSFPEVVLG 558 (587)
Q Consensus 479 l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~~~~~~~~GlG~~i~~~~~~~~~~~~~~~ 558 (587)
++|+||++|+++||+++|+.+|.+.|.+++++..+++.+|++.+++|+++. ..|+|+++.++.+..|++.+.+.
T Consensus 82 ~v~aA~~~G~s~~~i~~~~~lP~~~p~ii~~~~~~~~~~~~~~~~~e~l~~------~~GlG~~~~~a~~~~d~~~~~~~ 155 (183)
T pfam00528 82 LVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGS------WPGLGLLLIEAILGYDYPEIQGP 155 (183)
T ss_pred HHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999869984341299218989999999999999999999999999936------89675999999997709999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999999972157899987633
Q gi|255764497|r 559 VLIMCCFVLALNRFLWHPLYLYGTRCLR 586 (587)
Q Consensus 559 ~~~~~~~~~~~~~l~~~~l~~~~~~r~~ 586 (587)
++.++++++.+|.+ .+-++++.++|.|
T Consensus 156 ~~~~~~~~~~~~~~-~d~l~~~ldpr~r 182 (183)
T pfam00528 156 VLAAALILLLLNLL-VDILQRLLDPRVR 182 (183)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHCCCCC
T ss_conf 99999999999999-9999987391017
No 62
>TIGR01183 ntrB nitrate ABC transporter, permease protein; InterPro: IPR005889 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry comprises of the nitrate transport permease in bacteria, the gene product of ntrB. The nitrate transport permease is the integral membrane component of the nitrate transport system and belongs to the ATP-binding cassette (ABC) superfamily. At least in photosynthetic bacteria nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA, ntrB, ntrC, ntrD, narB. Functionally ntrC and ntrD resemble the ATP binding components of the binding protein-dependent transport systems. Mutational studies have shown that ntrB and ntrC are mandatory for nitrate accumulation. Nitrate reductase is encoded by narB. ; GO: 0015112 nitrate transmembrane transporter activity, 0015706 nitrate transport, 0016021 integral to membrane.
Probab=99.83 E-value=1.7e-18 Score=150.64 Aligned_cols=189 Identities=24% Similarity=0.448 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 68899999999999999999973100001124543667899985446677544469999999998315566504799999
Q gi|255764497|r 376 VLYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRPHISSKIQPFAQLLAAFPANVFFPLVVSCVSYYHLNPNLWLSLL 455 (587)
Q Consensus 376 ~~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (587)
...+......++.|+..|+..+...|+.+|...+.++...+.++|..+.++.+|+.+|.|.....+.... ...++.
T Consensus 12 ~~Gl~~q~~~sl~rva~G~~~aa~~Gi~~G~~~G~~~~~~~~ldP~~q~lr~~~PlaW~Pi~l~~~~~~~----~~aifv 87 (203)
T TIGR01183 12 DKGLFLQILASLTRVAVGYLLAAIVGIAVGILIGLSKLLNKALDPIFQVLRTVPPLAWLPIALAAFQDAQ----PAAIFV 87 (203)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC----CCEEEE
T ss_conf 2037999999999999999999999999999974689998742089999975153457889999984168----631311
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999999999999739989999999749887899899985745778999999999999999999998505564422
Q gi|255764497|r 456 MIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGHIHLR 535 (587)
Q Consensus 456 ~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~~~~~~ 535 (587)
+++.+.||++.|+..|.+|+|+++.+.+|.+..++.+.+.+|.+|...|++++|++.+.+.+|.+.+.+|++..+
T Consensus 88 ifita~WPi~int~~G~~~~P~dy~nv~rvl~ls~~~y~~~~~~P~~~Py~f~Gl~i~~Gl~Wlai~aae~~~~~----- 162 (203)
T TIGR01183 88 IFITAIWPIIINTAVGVQQIPQDYNNVARVLKLSKSDYLLKVLLPAAVPYIFTGLRIAIGLSWLAIVAAEMLIGG----- 162 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_conf 248779899987666676311778999999998788888877754445689865899999999999999998605-----
Q ss_pred CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 37837999999973497989999999999999999997
Q gi|255764497|r 536 TTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFL 573 (587)
Q Consensus 536 ~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 573 (587)
..|+|++++|+.+.+....+..+++.++++++.+|+++
T Consensus 163 ~~GiGffiWday~~~~~s~~ila~~y~G~vGl~l~~~v 200 (203)
T TIGR01183 163 IVGIGFFIWDAYNSGSVSEIILAIIYVGLVGLLLDRLV 200 (203)
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 43012432222301430479999999999999999998
No 63
>TIGR02141 modB_ABC molybdate ABC transporter, permease protein; InterPro: IPR011867 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterised in Escherichia coli , Staphylococcus carnosus Rhodobacter capsulatus and Azotobacter vinlandii . Molybdate is chemically similar to sulphate, thiosulphate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulphate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulphate permease proteins and not included in this model.; GO: 0015098 molybdate ion transmembrane transporter activity, 0015689 molybdate ion transport, 0016021 integral to membrane.
Probab=99.82 E-value=4.5e-18 Score=147.58 Aligned_cols=191 Identities=17% Similarity=0.185 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCC-------------H
Q ss_conf 9999999999997310000112454366-78999854466775444699999999983155--665-------------0
Q gi|255764497|r 385 ITMFRVVVLIIIASIIWIPVGIWIGFRP-HISSKIQPFAQLLAAFPANVFFPLVVSCVSYY--HLN-------------P 448 (587)
Q Consensus 385 ~tl~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~--~~~-------------~ 448 (587)
.|+..+.+++++...+|++.+++..+++ +.+..++......-..||.|....+.+.||.. ..+ +
T Consensus 2 LSlk~A~~~Tl~~~~LGi~~A~~La~~~f~gK~~le~L~~LPLVLPPtV~Gf~LL~~fG~~~G~~G~l~~~~~~~Gl~Ft 81 (212)
T TIGR02141 2 LSLKVAVIATLLLLPLGIPVAWLLARSRFRGKSLLEALVTLPLVLPPTVLGFYLLLAFGRNSGPIGKLLELLGISGLVFT 81 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHH
T ss_conf 79999999999999999999999988617604544644432663563789999999880357407789886506852466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 47999999999999999999999973998999999974988789989998574577899999999999999999999850
Q gi|255764497|r 449 NLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVAS 528 (587)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~ 528 (587)
..+.+++-++.++|++++++.++++.+|+|+||+||++|+|++++|+||+||+++|++++|..++|.++.-|--+.-|++
T Consensus 82 ~~g~vlAs~~VSfPl~v~~~~~a~~~~~~~~~~~ArtLGaS~~~~f~~v~LPL~~pG~l~G~vL~FAR~LGEFGAtlm~a 161 (212)
T TIGR02141 82 FAGAVLASVVVSFPLMVRTIRGAFEAVDPDLEEAARTLGASELRVFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFA 161 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999977689999999986271289999882787899899998573289999999999997502113443100
Q ss_pred CCCCCCCCCCHHHHHHHHHHH-CCHHHHHHHHHH---HHHHHHHHHHHHHHH
Q ss_conf 556442237837999999973-497989999999---999999999997215
Q gi|255764497|r 529 WGHIHLRTTGLGAYIAESTEK-GSFPEVVLGVLI---MCCFVLALNRFLWHP 576 (587)
Q Consensus 529 ~~~~~~~~~GlG~~i~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~l~~~~ 576 (587)
||..--++.+--.||++.+. +|+++.....++ ++++++...++++||
T Consensus 162 -GNIpGkT~T~plaIY~~v~~lg~~~~A~~l~l~ll~~s~~~ll~~~~~~~R 212 (212)
T TIGR02141 162 -GNIPGKTRTIPLAIYDAVESLGDYEAAHLLSLVLLALSLIVLLLVELLNKR 212 (212)
T ss_pred -CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf -469796301767788677057886789999999999999999999875059
No 64
>COG0581 PstA ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.82 E-value=2.3e-16 Score=135.22 Aligned_cols=155 Identities=18% Similarity=0.240 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 06899999999999999999999999999999715---026789999999997432899999999998401455421047
Q gi|255764497|r 59 HSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKS---RRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVIGAE 135 (587)
Q Consensus 59 ~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~---~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~~~~~~ 135 (587)
++.-..+.+|+.+.+.+.+++..+|+..|++...+ .+..+.++-..+.+.++|++++..+...+|...... .++.
T Consensus 67 gGi~~Ai~GTl~~~~~~~li~~PiGv~aaIYL~EYa~~~~~t~~ir~~i~~La~vPSIV~GLFg~~~fV~~~g~--~~S~ 144 (292)
T COG0581 67 GGIGPAIVGTLYLILLAILIGVPLGIGAGIYLAEYAKKSRLTKVIRFAIDILASVPSIVYGLFGLGFFVVTLGF--GFSA 144 (292)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC--CCHH
T ss_conf 73699999999999999999998999999999997478729999999999880684499999999999999777--6179
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999985359999999999729989999999628882012365552621578999999999999899899999735
Q gi|255764497|r 136 LAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVV 215 (587)
Q Consensus 136 ~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~ 215 (587)
.+...+....+.|.+.+.+.|+++++|++++||+..+|++|||+.+||.+|.++|+|++|.+++.....++ .+|.++..
T Consensus 145 laGaLaLall~LP~iirtteeaL~~VP~~~ReAs~aLGasKwqtI~~vvlP~A~pGIiTGviLaiaR~~GE-TAPlL~ta 223 (292)
T COG0581 145 LAGALALALLMLPVVIRTTEEALRAVPDSLREAAYALGATKWQTIFKVVLPAALPGIITGVILAIARAAGE-TAPLLFTA 223 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_conf 99999999998889999999999808999999999749848789788889714758999999999999872-48999996
Q ss_pred C
Q ss_conf 4
Q gi|255764497|r 216 G 216 (587)
Q Consensus 216 ~ 216 (587)
+
T Consensus 224 g 224 (292)
T COG0581 224 G 224 (292)
T ss_pred H
T ss_conf 5
No 65
>TIGR02140 permease_CysW sulfate ABC transporter, permease protein CysW; InterPro: IPR011866 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CysW, one of two homologous, tandem permeases in the sulphate ABC transporter system; the other is CysT (IPR011865 from INTERPRO). The sulphate transporter has been described in Escherichia coli as transporting sulphate, thiosulphate, selenate, and selenite. Sulphate transporters may also transport molybdate ion if a specific molybdate transporter is not present.; GO: 0015116 sulfate transmembrane transporter activity, 0008272 sulfate transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=99.81 E-value=8.4e-19 Score=152.88 Aligned_cols=203 Identities=14% Similarity=0.085 Sum_probs=159.7
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH----CC
Q ss_conf 6687074068999999999999999999999999999997150267-899999999974328999999999984----01
Q gi|255764497|r 52 VPITLDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLG-MVLVPILDIMQSIPILGFLTFTVVYFM----NL 126 (587)
Q Consensus 52 ~~~~~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~~-~~~~~~l~~~~~iP~~~~~~~~~~~f~----~~ 126 (587)
+....++++-.+.+..|+..+..+.-+-+++|+..||..+|+++++ +.+..++|++.++.|++-...++++|| ..
T Consensus 36 f~~~i~~Pd~~sA~~LTlLv~~I~VPlN~~FGv~~Aw~~~rf~FpGk~lL~t~iDlPFSVSPVvAGL~~~LLyGrqGW~~ 115 (275)
T TIGR02140 36 FFAAISDPDALSAIKLTLLVALIVVPLNTVFGVAAAWVLTRFQFPGKRLLLTIIDLPFSVSPVVAGLIFVLLYGRQGWSQ 115 (275)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 99973595589999898866765330788999999999874316745767777760443224899999999843100136
Q ss_pred -------CCCCCCH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf -------4554210------------479999999998535999999999972998999999962888201236555262
Q gi|255764497|r 127 -------YPGKVIG------------AELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPF 187 (587)
Q Consensus 127 -------~~~~~~~------------~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~ 187 (587)
...+.+| +..+.+.+....+.|++.+=+--=+++..+|-||||.++|||.||+|||||||.
T Consensus 116 PliedGvrfsG~lG~~l~~~d~~IiF~~PGivLAT~FVT~PFVAREliPvl~~qG~~~EeAAltLGAs~WqtFwrVTLPn 195 (275)
T TIGR02140 116 PLIEDGVRFSGWLGPWLEDRDIKIIFSLPGIVLATIFVTLPFVARELIPVLEEQGTEQEEAALTLGASWWQTFWRVTLPN 195 (275)
T ss_pred CHHHCCCCEECCCHHHHHHCCCEEEECCHHHHHHHHHHCCCEEEEECCHHHHHCCCHHHHHHHHHCCCCEEEEEEEECCC
T ss_conf 22343420004202788862885887141341023432588012200113631594689999872776223335661687
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 15789999999999998998999997354442036788999999863113256999999999999999
Q gi|255764497|r 188 SMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLY 255 (587)
Q Consensus 188 ~~P~i~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 255 (587)
.+=+++.|+++.-..+.++||+...+.+. -....+++=-++..-.++.+...++++.-++.+++++.
T Consensus 196 IkWgLlYG~~LcnARamGEFGAVsVVSG~-IrG~TnTLPL~Ve~lY~~Y~~~AAFA~AslLal~Al~T 262 (275)
T TIGR02140 196 IKWGLLYGVILCNARAMGEFGAVSVVSGH-IRGKTNTLPLHVELLYNEYQSEAAFAAASLLALLALVT 262 (275)
T ss_pred CHHHHHHHHHHHCCHHHCCCCCEEEEECC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 15789854677513020021125688526-89998763243232324013478899999999999999
No 66
>COG4149 ModC ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=4.1e-18 Score=147.87 Aligned_cols=206 Identities=15% Similarity=0.084 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----------
Q ss_conf 8999999999999999999731000011245436678-9998544667754446999999999831556-----------
Q gi|255764497|r 378 YVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRPHI-SSKIQPFAQLLAAFPANVFFPLVVSCVSYYH----------- 445 (587)
Q Consensus 378 ~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~----------- 445 (587)
..+.....|+..+.++..++..+|++.+++..|.+.. ...++......-..|+.+........||..+
T Consensus 4 ~~~~~l~LSlkvA~ist~~~l~lgi~~a~~Lar~~~~~k~ll~~lv~LPLVLPPtV~G~~LLi~fgr~g~iG~~l~~~~g 83 (225)
T COG4149 4 EELTALLLSLKVALISTLLLLPLGIALAYLLARRRFRGKSLLESLVLLPLVLPPVVLGFLLLVLFGRNGFIGQFLEDWFG 83 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCC
T ss_conf 78889999999999999999999999999997255776309999997323689538999999997477706789999759
Q ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---65047999999999999999999999973998999999974988789989998574577899999999999999999
Q gi|255764497|r 446 ---LNPNLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASI 522 (587)
Q Consensus 446 ---~~~~~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~ 522 (587)
.-+..+.++...+.++|++++....++++||+++||||+++|+|+|++|++|+||+++|++++|...+|..++.+.-
T Consensus 84 ~~~~Fs~~gavlAs~vvslPlmv~~~~~a~~~id~~le~aA~tlGas~~~vf~~i~LPLalpGIlag~iLsFAralGEFG 163 (225)
T COG4149 84 LSLAFSWQGAVLASVVVSLPLMVRPLRLAFEAIDRELEEAARTLGASRWEVFFRITLPLALPGILAGVILSFARALGEFG 163 (225)
T ss_pred CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHEEEECCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 70798448999999999889899999999985684599999981888021310014022106799999999999862057
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999850556442237837999999973497989999999999999999997215789998763
Q gi|255764497|r 523 VSEVASWGHIHLRTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFLWHPLYLYGTRCL 585 (587)
Q Consensus 523 ~ae~~~~~~~~~~~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~r~ 585 (587)
+.-++ .||..--++.+--.||++.+.+|++......+++.++.+..-.. -..+.++..+|.
T Consensus 164 Atlm~-aGNIpG~T~Tlp~aIY~~~q~g~~~~A~~l~li~v~is~~~L~~-~~~l~~~~~~~~ 224 (225)
T COG4149 164 ATLMF-AGNIPGETQTLPLAIYTAVQAGNYALAHRLVLILVVISLLVLFV-SEWLARRSSKRL 224 (225)
T ss_pred EEEEE-ECCCCCCCEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCC
T ss_conf 07987-54788853110699999998187889999999999999999999-999987642016
No 67
>COG0555 CysU ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=4.9e-18 Score=147.31 Aligned_cols=207 Identities=14% Similarity=0.112 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------
Q ss_conf 88999999999999999999731000011245436678-999854466775444699999999983155-----------
Q gi|255764497|r 377 LYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRPHI-SSKIQPFAQLLAAFPANVFFPLVVSCVSYY----------- 444 (587)
Q Consensus 377 ~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~----------- 444 (587)
...+.+...|+.....+.+++.+.|.+.++...|++.. ++..+-..+..-++|..+........++..
T Consensus 53 ~~~~~a~~~S~~~a~~atl~~~vfg~~~a~vL~R~~fpgk~lvdaivDlP~alP~~VaGiaLl~l~~~~g~~g~~~~~~g 132 (274)
T COG0555 53 PRVLAALKLTLLTAFAATLLNLVFGLPLAWVLVRYDFPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGLLGSLLAPLG 132 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
T ss_conf 98999999999999999999999998998985403588489999996276137548999999999667874035541247
Q ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --665047999999999999999999999973998999999974988789989998574577899999999999999999
Q gi|255764497|r 445 --HLNPNLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASI 522 (587)
Q Consensus 445 --~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~ 522 (587)
...+..+++......+.|+++|++..+++++|+|+|||||++|+++||+|++|.+|++.|++++|...+|..++.+.-
T Consensus 133 i~~~~t~~GVivA~~Fvs~Pf~vr~v~~~~~~id~~~EeaA~sLGas~~~tf~~V~lP~l~pall~G~~LsfaR~igEfG 212 (274)
T COG0555 133 IKFAFTPLGVIVAMFFVSLPFVVRTVQPVLEEIDREYEEAARSLGASPLQTFRRVILPLLLPALLAGFILSFARSIGEFG 212 (274)
T ss_pred CEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEEEEEHHHCHHHHHHHHHHHHHHHHCCCC
T ss_conf 56764678999999997033689988999985568899999864898551114244641338999999999999824546
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999850556442237837999999973497989999999999999999997215789998763
Q gi|255764497|r 523 VSEVASWGHIHLRTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFLWHPLYLYGTRCL 585 (587)
Q Consensus 523 ~ae~~~~~~~~~~~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~r~ 585 (587)
...++. |++..-+.-..-+|+...+.+|++...+..+++.++....-..+ |.+..+..||.
T Consensus 213 avl~iA-gn~p~~t~~~pl~Iy~~~~~~d~~~A~ais~vll~iS~~~l~~~-r~~~~~~~r~~ 273 (274)
T COG0555 213 AVLIIA-GNTPYKTETLPLLIYTRLESYDLEAAAAISVVLLLISFILLLVI-RLLQSRARRRE 273 (274)
T ss_pred EEEEEE-CCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCC
T ss_conf 499981-47778773038999999983793579999999999999999999-99987642057
No 68
>COG4986 ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=7.4e-18 Score=146.03 Aligned_cols=208 Identities=19% Similarity=0.358 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 68999999999999999999999999999997150267899999999974328999999999984014554210479999
Q gi|255764497|r 60 SLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVIGAELAAI 139 (587)
Q Consensus 60 ~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~~~~~~~~~i 139 (587)
...-.+..|+.|+..-..+|.++++++||..+.+++.++..+|..+.+.+.|+..+.|+....-..-. ...+.-..
T Consensus 314 ~v~~~~l~~~lRV~vilals~~i~i~lGy~i~~~p~~e~i~~P~~Q~LaafPa~~~FPl~~aa~~~~i----~~~ei~l~ 389 (523)
T COG4986 314 AVLLYLLYDYLRVVVILALSFLISIFLGYSIALRPRVEGIGQPLIQFLAAFPAPIYFPLLFAAIKTFI----LTPEIWLS 389 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----CCCHHHHH
T ss_conf 89998788999999999999999998657403151165541279999871892378889999999986----07457774
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999853599999999997299899999996288820123655526215789999999999998998999997354442
Q gi|255764497|r 140 FAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTV 219 (587)
Q Consensus 140 ~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~~~~~ 219 (587)
..++...+++++.++..|.+++|.|+.|++|+++.+.|..++++.+|...|.+++|+.-....+|+..++.|....+.+.
T Consensus 390 pL~~~gT~~Yi~~n~iaG~ka~P~e~~e~akny~l~~w~k~r~iilP~tFPYlitG~~tt~ggaWna~iV~Ey~s~g~~~ 469 (523)
T COG4986 390 PLGFIGTFYYIFYNVIAGAKALPVEYFEAAKNYNLGGWAKWRRIILPGTFPYLITGLSTTIGGAWNALIVGEYWSWGHTL 469 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHEEEECCCCCHH
T ss_conf 67776678999999998765277899999997083559988887536422999874775304634400202200267426
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0367889999998631132569999999999999999999989875444321
Q gi|255764497|r 220 IPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQLLFRPMIVWSNKFR 271 (587)
Q Consensus 220 ~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 271 (587)
....|+|.++..+.+..|++.......++.+++...+.+.+|++...+++..
T Consensus 470 ~v~~GlgkyIa~aT~aGd~pr~~~g~~im~i~Vvv~n~~~wrRl~d~A~kr~ 521 (523)
T COG4986 470 LVAHGLGKYIAVATAAGDIPRALWGSFIMGIVVVVYNILFWRRLMDLARKRY 521 (523)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6563279899999856883068886565504555757999999999999872
No 69
>COG0581 PstA ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=2.9e-16 Score=134.43 Aligned_cols=209 Identities=18% Similarity=0.115 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCHHH
Q ss_conf 6889999999999999999997310000112454366---789998544667754446999999999831556--65047
Q gi|255764497|r 376 VLYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRP---HISSKIQPFAQLLAAFPANVFFPLVVSCVSYYH--LNPNL 450 (587)
Q Consensus 376 ~~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~--~~~~~ 450 (587)
.+.+..+...|+..+.++.+++..+|+..|++...+. +..+.++...+.+..+|.+++..+....|-... ..+..
T Consensus 66 ~gGi~~Ai~GTl~~~~~~~li~~PiGv~aaIYL~EYa~~~~~t~~ir~~i~~La~vPSIV~GLFg~~~fV~~~g~~~S~l 145 (292)
T COG0581 66 GGGIGPAIVGTLYLILLAILIGVPLGIGAGIYLAEYAKKSRLTKVIRFAIDILASVPSIVYGLFGLGFFVVTLGFGFSAL 145 (292)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 87369999999999999999999899999999999747872999999999988068449999999999999977761799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
Q ss_conf 9999999999999999999999739989999999749887899899985745778999999999999999999998505-
Q gi|255764497|r 451 WLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASW- 529 (587)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~- 529 (587)
+......+..+|++++++.+++++||++++|||..+|+++||+.+||++|.++|+|+||.+++.+.+.-|.-.--+..+
T Consensus 146 aGaLaLall~LP~iirtteeaL~~VP~~~ReAs~aLGasKwqtI~~vvlP~A~pGIiTGviLaiaR~~GETAPlL~tag~ 225 (292)
T COG0581 146 AGALALALLMLPVVIRTTEEALRAVPDSLREAAYALGATKWQTIFKVVLPAALPGIITGVILAIARAAGETAPLLFTAGM 225 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999988899999999998089999999997498487897888897147589999999999998724899999653
Q ss_pred --------CCCCCCCCCHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --------56442237837999999973497----989999999999999999997215789998763
Q gi|255764497|r 530 --------GHIHLRTTGLGAYIAESTEKGSF----PEVVLGVLIMCCFVLALNRFLWHPLYLYGTRCL 585 (587)
Q Consensus 530 --------~~~~~~~~GlG~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~r~ 585 (587)
.+.......+...|++..+.+.+ ...+++..++.++++.+|..- |-+.++-+||+
T Consensus 226 ~~~~~~~p~~~~~p~~~Lpv~Iy~~~~~~~~~~~~~~a~gaa~vLl~~vl~ln~~a-~~l~~~~~~~~ 292 (292)
T COG0581 226 SANSPSWPTDLLTPVAALPVHIYMLATSGPSPEAQELAWGAALVLLLIVLLLNLLA-RLLRRRFRKKL 292 (292)
T ss_pred HHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCC
T ss_conf 55146589876674431259999997056767799989999999999999999999-99999885039
No 70
>TIGR01581 Mo_ABC_porter NifC-like ABC-type porter; InterPro: IPR006469 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents a clade of ABC porter genes with relatively weak homology compared to its neighbour clades, the molybdate (IPR006229 from INTERPRO) and sulphate (IPR005667 from INTERPRO) porters. Neighbour-Joining, PAM-distance phylogenetic trees support the separation of these clades in this way. Included in this group are the NifC genes of Clostridium pasteurianum and Pasteurella multocida, which are involved in the biosynthesis and/or control of nitrogenase. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within this group are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulphate porter. There is presently no experimental evidence to support annotations with this degree of specificity.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane.
Probab=99.80 E-value=3e-17 Score=141.65 Aligned_cols=189 Identities=15% Similarity=0.125 Sum_probs=159.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCC------
Q ss_conf 889999999999999999997310000112454366--7899985446677544469999999998315-5665------
Q gi|255764497|r 377 LYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRP--HISSKIQPFAQLLAAFPANVFFPLVVSCVSY-YHLN------ 447 (587)
Q Consensus 377 ~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~-~~~~------ 447 (587)
.+...++..|+....++++.+..+|+|.++.+.|.+ ..++.++.+.+..-..|+.|-...+.+.||. +..+
T Consensus 17 ~~~~~al~lSl~Ts~~sl~l~~~~g~P~A~~lar~~n~pl~~~l~~ll~LP~VlPPlV~G~aLLl~FG~~g~lG~~l~~a 96 (226)
T TIGR01581 17 PELIKALRLSLLTSLASLLLAVVLGIPTAYVLARVRNFPLKKLLDTLLDLPLVLPPLVAGIALLLLFGRLGLLGPYLEAA 96 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHC
T ss_conf 99999999999999999999999998899999887506854778999866542466588899999972021268999864
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ------04799999999999999999999997399899999997498878998999857457789999999999999999
Q gi|255764497|r 448 ------PNLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNAS 521 (587)
Q Consensus 448 ------~~~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~ 521 (587)
+..+++.+-...+.||.+|+.+++++++|+++||+||++|+++.|+||||++|+++|++++|...+|..|.-|-
T Consensus 97 Gi~~~Fs~~gvvlAQ~FVa~p~~vr~~r~~f~~v~~~ye~va~~lG~g~~~t~~~v~lPl~~~~ll~G~vLafaRalGEF 176 (226)
T TIGR01581 97 GIQVIFSTLGVVLAQTFVASPYLVRVARSTFESVDPDYEDVARSLGAGPLETFRKVTLPLARPGLLAGLVLAFARALGEF 176 (226)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 41678888999999999999999999997673038348999988078722678887577533688887999999975656
Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 999985055644223783799999997349798999999999999
Q gi|255764497|r 522 IVSEVASWGHIHLRTTGLGAYIAESTEKGSFPEVVLGVLIMCCFV 566 (587)
Q Consensus 522 ~~ae~~~~~~~~~~~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~ 566 (587)
-+.-++ -|+....+..+.-.||.+.+++|.+......+.+.++.
T Consensus 177 GATL~~-AG~~~g~TrTlPl~iY~~~~~d~~~~aV~~a~~Ll~ia 220 (226)
T TIGR01581 177 GATLMF-AGSLQGKTRTLPLAIYLNIESDDIEAAVALAVLLLVIA 220 (226)
T ss_pred HHHHHH-HCCCCCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 789998-43677753012788864574177327999999999999
No 71
>CHL00187 cysT sulfate transport protein; Provisional
Probab=99.80 E-value=4.6e-17 Score=140.25 Aligned_cols=172 Identities=16% Similarity=0.134 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----------
Q ss_conf 889999999999999999997310000112454366-789998544667754446999999999831556----------
Q gi|255764497|r 377 LYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRP-HISSKIQPFAQLLAAFPANVFFPLVVSCVSYYH---------- 445 (587)
Q Consensus 377 ~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~---------- 445 (587)
...+.+..+|+..+..+..++..+|.+.++...|.+ +.++.++........+|+.+........++..+
T Consensus 49 ~~~~~~~~~Sl~~s~~~t~i~~~ig~~~A~~l~r~~~~gk~~~~~l~~lP~~iP~~v~a~~~~~~f~~~G~~~~~l~~~~ 128 (235)
T CHL00187 49 PIALSAYSLTVSMALIAALINGIFGLLIAWVLVRYNFPGKRFLDAAVDLPFALPTSVAGLTLATVYGDNGWIGHILSSLG 128 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
T ss_conf 99999999999999999999999999999999984376189999999999997899999999999644661768999707
Q ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---65047999999999999999999999973998999999974988789989998574577899999999999999999
Q gi|255764497|r 446 ---LNPNLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASI 522 (587)
Q Consensus 446 ---~~~~~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~ 522 (587)
.......++.+....+|++.+.+.++++++|+|+||||+++|||+||+||||++|+++|++++|...++..++.+..
T Consensus 129 ~~~~~~~~giii~~~~~~~P~~~~~~~~~l~~i~~~leEAA~~lGAs~~~~f~~I~lPll~p~i~a~~~l~f~~~~~eFg 208 (235)
T CHL00187 129 IKIVFTKLGVLLAMIFVSLPFVVRTIQPVLQEIEKELEEAAWSLGASPWETFWKVIFPPLIPALLTGLALTFSRAIGEYG 208 (235)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 65123099999999998879999989999986029999999873999504113121784689999999999999999987
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 999850556442237837999999973
Q gi|255764497|r 523 VSEVASWGHIHLRTTGLGAYIAESTEK 549 (587)
Q Consensus 523 ~ae~~~~~~~~~~~~GlG~~i~~~~~~ 549 (587)
..-+++ ||....+..+--.|+++.++
T Consensus 209 ~~~~lg-Gn~~~~~~t~~~~iy~~~~~ 234 (235)
T CHL00187 209 SIVLIS-SNIPFKDLVASVLIFQSLEQ 234 (235)
T ss_pred HHHEEE-CCCCCCCCHHHHHHHHHHHC
T ss_conf 898025-68898420489999999864
No 72
>COG3639 ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=9.2e-16 Score=130.80 Aligned_cols=190 Identities=16% Similarity=0.159 Sum_probs=174.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 4068999999999999999999999999999997150----267899999999974328999999999984014554210
Q gi|255764497|r 58 VHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSR----RLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVIG 133 (587)
Q Consensus 58 ~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~----~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~~~~ 133 (587)
....+..++.|+.+++.+++++.++++|++++++++- +....++.+++..+++|.++|+.+++..+|.|.
T Consensus 84 ~~~~~~~ll~Tl~ma~~gT~l~~i~aipl~flaa~n~~~~~~~~~~~r~ll~~iR~iP~iv~a~ifv~~~g~G~------ 157 (283)
T COG3639 84 LPDILTALLQTLAIAFAGTLLAAILAIPLAFLAARNLSPKRWISFPVRRLLDFIRTIPELVWALLFVAAFGLGP------ 157 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH------
T ss_conf 31579999999999999999999999999999731258641289999999999976429999999999857854------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 47999999999853599999999997299899999996288820123655526215789999999999998998999997
Q gi|255764497|r 134 AELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMI 213 (587)
Q Consensus 134 ~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~ 213 (587)
.+.+.++..+..-......+|+++++|+...|+.|..|+|+.|..+.-.+|..+|...+-....|..+.++..+-+.+
T Consensus 158 --~agilAl~i~t~g~LgKl~~e~iE~id~~p~e~l~a~Gas~~~~~~~~vlPqv~p~f~s~~lyrfE~n~R~a~VlG~v 235 (283)
T COG3639 158 --FAGVLALGIYTIGILGKLYAEALESIDTGPGEALRATGASRLQLILFGVLPQIKPNFISYSLYRFESNIRAAAVLGLV 235 (283)
T ss_pred --HHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf --778999999802199999999998457767899998368614533112001241889999999999875788998732
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3544420367889999998631132569999999999999999999989
Q gi|255764497|r 214 VVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQLLFRP 262 (587)
Q Consensus 214 g~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 262 (587)
|.| |+|....++.+..+++++...++.+.+.+.+.|....+-
T Consensus 236 GaG-------GIG~~L~~~~~~~~~d~v~~i~l~i~v~V~~id~iS~~i 277 (283)
T COG3639 236 GAG-------GIGQRLMNSISLFQWDKVATIILPILVLVILIDLISAKI 277 (283)
T ss_pred CCC-------HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 554-------277999988744047576999999999999999999999
No 73
>COG0395 UgpE ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]
Probab=99.79 E-value=1.5e-16 Score=136.50 Aligned_cols=196 Identities=15% Similarity=0.093 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 89999999999999999997310000112454366789-998544667754446999-9999998315566504799999
Q gi|255764497|r 378 YVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRPHIS-SKIQPFAQLLAAFPANVF-FPLVVSCVSYYHLNPNLWLSLL 455 (587)
Q Consensus 378 ~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ip~~~~-~~~~~~~~~~~~~~~~~~~~~~ 455 (587)
.......+|+..+..+++++..++...|+...|.+... +.+.........+|..+. +|...+.-..+..++.++.+..
T Consensus 70 ~~~~~~~NS~iva~~~t~l~~~~~~laaYalar~~f~g~~~l~~~~l~~~m~P~~v~~iPl~~~~~~lgl~nt~~glil~ 149 (281)
T COG0395 70 GFLRYFLNSLIVAVGSTVLSLLLSSLAAYALARFRFKGRKLLFLLLLLTLMLPAQVLLIPLYLLMRKLGLLNTYWGLILP 149 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 89999998999999999999999999899999853360999999999999856999999899999982661047999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCC
Q ss_conf 999999999999999997399899999997498878998999857457789999999999999999999985055-6442
Q gi|255764497|r 456 MIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWG-HIHL 534 (587)
Q Consensus 456 ~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~-~~~~ 534 (587)
+.....|+.+.-..+-++++|+|+||||+.+|||+||.|+||.+|+++|++.+-.++++..+||+..-+-.+... ++.+
T Consensus 150 ~~~~~~pf~ifl~~~ff~~iP~eLeEAA~iDGas~~~if~kI~lPl~~P~iaa~aI~~fi~~WN~fl~pli~~~~~~~~t 229 (281)
T COG0395 150 YLAFGLPFAIFLLRQFFRTIPKELEEAARIDGASEFQIFFKIVLPLAKPGLAAVAIFTFIGAWNEFLWPLILLSSPNLLT 229 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99998889999999999869899999999828965789999998703789999999999999999999999918876421
Q ss_pred CCCCHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 237837999999-973497989999999999999999997215
Q gi|255764497|r 535 RTTGLGAYIAES-TEKGSFPEVVLGVLIMCCFVLALNRFLWHP 576 (587)
Q Consensus 535 ~~~GlG~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 576 (587)
.+.|+ .-..+ ....|++.++|+.++..+=.+++..++ ||
T Consensus 230 l~v~l--~~~~~~~~~~~w~~~~A~~vi~~lP~li~f~~~-Qr 269 (281)
T COG0395 230 LPVGL--NSFGGSEGGTDWGLIMAAAVLAILPVLIVFLFF-QR 269 (281)
T ss_pred HHHHH--HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_conf 99999--996343356668999999999999999999999-99
No 74
>pfam00528 BPD_transp_1 Binding-protein-dependent transport system inner membrane component. The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Probab=99.79 E-value=1.1e-16 Score=137.55 Aligned_cols=167 Identities=25% Similarity=0.339 Sum_probs=143.4
Q ss_pred HHHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999997--150267899999999974328999999999984014554210479999999998535999999999972
Q gi|255764497|r 83 TFVYATLAA--KSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVIGAELAAIFAIFTSQVWNMTFSMYQSLCN 160 (587)
Q Consensus 83 g~~~a~~~~--~~~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~ 160 (587)
|+++|+.++ ++++.++.+.++.++.+++|.+++++..+.+++..... ....+.+........|++..+..+++++
T Consensus 1 Gv~lG~~~a~~~~~~~d~~~~~~~~~~~~iP~~~l~~~l~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~l~~ 77 (183)
T pfam00528 1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVISILSILG---HGILPAIILALLGWAGYARLIRRAALRS 77 (183)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9869999995078589999999999999834999999999998423667---8999999999999999999999999970
Q ss_pred CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 99899999996288820123655526215789999999999998998999997354442036788999999863113256
Q gi|255764497|r 161 IPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLA 240 (587)
Q Consensus 161 i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~~~~~~~ 240 (587)
+|++++|+||++|+|+||+++|+.+|.++|.++++..++++.++......|.++.. +|+|..+.++.+..|++.
T Consensus 78 ~~~~~v~aA~~~G~s~~~i~~~~~lP~~~p~ii~~~~~~~~~~~~~~~~~e~l~~~------~GlG~~~~~a~~~~d~~~ 151 (183)
T pfam00528 78 LPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSW------PGLGLLLIEAILGYDYPE 151 (183)
T ss_pred CCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHHHH
T ss_conf 68999999998699843412992189899999999999999999999999999368------967599999999770999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999
Q gi|255764497|r 241 ILYAMLTMLGVIFLYDQL 258 (587)
Q Consensus 241 ~~~~~~~i~~~~~~~~~~ 258 (587)
.......+.++.+.++..
T Consensus 152 ~~~~~~~~~~~~~~~~~~ 169 (183)
T pfam00528 152 IQGPVLAAALILLLLNLL 169 (183)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999
No 75
>COG0573 PstC ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=1e-15 Score=130.47 Aligned_cols=201 Identities=18% Similarity=0.203 Sum_probs=154.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------
Q ss_conf 406899999999999999999999999999999715--0-2678999999999743289999999999840145------
Q gi|255764497|r 58 VHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKS--R-RLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYP------ 128 (587)
Q Consensus 58 ~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~--~-~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~------ 128 (587)
..+.+..+..|+...+.+.++++.+|+..|+.+..+ | +.++.+.|.++++..||+++|....+..+.+...
T Consensus 74 ~~G~l~~i~GTli~s~iA~liAvP~gi~~Aifl~E~~~p~~~r~~l~~~iElLAgIPSVVYG~fgl~vl~P~l~~~~~~~ 153 (310)
T COG0573 74 QYGALPPIAGTLITSLIALLIAVPVGIGTAIFLSEYAPPRRLRRVLKPAIELLAGIPSVVYGFFGLFVLAPFLRDVFGPP 153 (310)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 55649999999999999999998788896888776358287888899999998169711778999999999999985220
Q ss_pred -CC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -54----2104799999999985359999999999729989999999628882012365552621578999999999999
Q gi|255764497|r 129 -GK----VIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGG 203 (587)
Q Consensus 129 -~~----~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~ 203 (587)
.. ...+.....+++.....|++.-..+|+++++|++++|++..+||+|||+.|||.+|.++|+++++..+.++.+
T Consensus 154 ~~~~~~~~g~~~L~a~ivL~IMIiP~i~Sls~da~~~VP~~lreas~aLGaTkweti~kVilpaa~~GIv~a~iLglgRA 233 (310)
T COG0573 154 LGFNLGPFGISILTAGIVLAIMILPTIASLSRDALRAVPRSLREAAYALGATKWETIRKVILPAARSGIVGAVILGLGRA 233 (310)
T ss_pred CHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 00103645520999999999999999999999999958799999998738871004336539866877999999998898
Q ss_pred HHHHHHHHHHHCCCCCHH------HHHHHHHHHH----HHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899899999735444203------6788999999----863113256999999999999999999
Q gi|255764497|r 204 WFFVVASEMIVVGDTVIP------LPGIGSYIAL----AIKEQDLLAILYAMLTMLGVIFLYDQL 258 (587)
Q Consensus 204 ~~~~~~~~~~g~~~~~~~------~~g~g~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~ 258 (587)
+++-++..+..+++.... ..++...+.. +.+..+....++..+++.++.++++.+
T Consensus 234 iGETmAV~mv~Gn~~~~~~slf~p~~Tits~ia~~~gea~~~~~~~aL~~~glvLfvitl~~n~~ 298 (310)
T COG0573 234 LGETMAVTMVIGNTARIPLSLFSPGTTLTSIIANEFGEASGGLHTSALFALGLVLFVITLLLNIL 298 (310)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 72899999996175557754368865499999998631231268999999999999999999999
No 76
>COG3833 MalG ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism]
Probab=99.79 E-value=1.3e-15 Score=129.80 Aligned_cols=203 Identities=15% Similarity=0.143 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 068999999999999999999999999999997150267-8999999999743289999999999840145542104799
Q gi|255764497|r 59 HSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLG-MVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVIGAELA 137 (587)
Q Consensus 59 ~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~~-~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~~~~~~~~ 137 (587)
..+++-.+||+..+..++++++.+..+.||...|.|+++ +-..-...++|++|.++-......++...+ .+....+
T Consensus 69 ~~y~~W~~Nsliva~~t~~i~v~~~~~~aYafSR~rF~GRk~~L~~~Li~qMfP~~~aliAlY~l~~~lg---llnt~~g 145 (282)
T COG3833 69 FPYLLWLWNSLIVALITAAITVALVTLAAYAFSRYRFKGRKYLLKFFLILQMFPGVAALIALYVLLKLLG---LLNTLWG 145 (282)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CHHHHHH
T ss_conf 1789999999999999999999999998988998626558999999999999899999999999999965---7116789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C
Q ss_conf 999999985359999999999729989999999628882012365552621578999999999999899899999735-4
Q gi|255764497|r 138 AIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVV-G 216 (587)
Q Consensus 138 ~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~-~ 216 (587)
.+++-.-...|+-......-++++|+|+||+|+..||++||.|+||.+|+++|-+....+++|+..|.|+..+..+-. +
T Consensus 146 Lil~Y~gG~ip~n~~l~Kgy~DTIP~sldEaA~iDGAt~~q~F~~IvLPLs~P~lavvaL~~FiGp~~dfiLa~~lL~~~ 225 (282)
T COG3833 146 LILAYLGGAIPMNTWLIKGYFDTIPKSLDEAAKIDGATRFQIFRRILLPLSKPILAVVALLAFIGPFGDFILASLLLRDP 225 (282)
T ss_pred HHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 99999647326889999844503895679998654850689999999860005999999999875779999999997481
Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4420367889999998631132569999999999999999999989875
Q gi|255764497|r 217 DTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQLLFRPMIV 265 (587)
Q Consensus 217 ~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 265 (587)
.+....-|+.+.+.. .+..+.+...++.+.+.+=+.++....+|..++
T Consensus 226 ~~~TlavGL~~~~~~-~~~~~~~~FAAgAvL~alPi~iLF~~lQk~~Vs 273 (282)
T COG3833 226 ENYTLAVGLQSFLNG-PQNTNWGLFAAGAVLIALPITILFLVLQKYLVS 273 (282)
T ss_pred HHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_conf 554259999999367-210269999999999864199999999999972
No 77
>cd06261 TM_PBP2 Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. F
Probab=99.78 E-value=2e-16 Score=135.60 Aligned_cols=178 Identities=19% Similarity=0.239 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHH
Q ss_conf 99999999999997310000112454366-7899985446677544469999999998315566-----50479999999
Q gi|255764497|r 384 CITMFRVVVLIIIASIIWIPVGIWIGFRP-HISSKIQPFAQLLAAFPANVFFPLVVSCVSYYHL-----NPNLWLSLLMI 457 (587)
Q Consensus 384 ~~tl~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 457 (587)
.+|+..+..+..++..+|.+.++...+++ +.++..+........+|..+........++.... ......+....
T Consensus 2 ~nSl~i~~~~~~i~~~ig~~~a~~~~~~~~~~~~~~~~~~~i~~~iP~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 81 (190)
T cd06261 2 LNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILAL 81 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 87999999999999999999999999518508899999999999803999999999999841232214789999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999999999999973998999999974988789989998574577899999999999999999999850556442237
Q gi|255764497|r 458 FGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGHIHLRTT 537 (587)
Q Consensus 458 ~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~~~~~~~~ 537 (587)
....|+..+...++++++|+|++|||+++|+++||++|||++|.++|+++++....+..+|++....+++++|+. ...
T Consensus 82 ~~~~p~~~~~~~~~l~~i~~~~~eaA~~~Ga~~~~~~~~i~lP~~~p~i~~~~~l~~~~~~~~~~~~~~l~~~~~--~~~ 159 (190)
T cd06261 82 LLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEA--PGP 159 (190)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCC
T ss_conf 999999999999999838999999999869973465699879963999999999999999999999999968999--968
Q ss_pred CHHHHHHHHH-HHCCHHHHHHHHHHHH
Q ss_conf 8379999999-7349798999999999
Q gi|255764497|r 538 GLGAYIAEST-EKGSFPEVVLGVLIMC 563 (587)
Q Consensus 538 GlG~~i~~~~-~~~~~~~~~~~~~~~~ 563 (587)
+.+.+.++.. ..+|+....+..+++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~a~~i~~~ 186 (190)
T cd06261 160 GTGLLLIFAILFPGDLGVAAAVALILL 186 (190)
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 399999999987578699999999999
No 78
>TIGR02138 phosphate_pstC phosphate ABC transporter, permease protein PstC; InterPro: IPR011864 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family describes PstC, which is homologous to PstA (IPR005672 from INTERPRO). In the Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016021 integral to membrane.
Probab=99.78 E-value=3e-15 Score=127.10 Aligned_cols=158 Identities=15% Similarity=0.197 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------
Q ss_conf 06899999999999999999999999999999715--02678999999999743289999999999840-----------
Q gi|255764497|r 59 HSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKS--RRLGMVLVPILDIMQSIPILGFLTFTVVYFMN----------- 125 (587)
Q Consensus 59 ~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~--~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~----------- 125 (587)
.+....++.|+...+.+.++|+.+|+..|+.+... |+.++.++|.++++..||+++|..+....+++
T Consensus 67 yG~l~~i~GTl~~~~~A~liA~P~~i~~Aif~~e~aP~~~~~~l~~~~ELLAgIPSVvYG~wG~~~l~P~l~~~~~~~~~ 146 (317)
T TIGR02138 67 YGALPLIVGTLITSLIAILIAVPVGIGIAIFLSEIAPKRVKSVLKPVVELLAGIPSVVYGFWGLFVLVPFLKDHFQPFLG 146 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 56699999999999999999999999999999985251135699999999722359999999999999999998867865
Q ss_pred -CC-----------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf -14-----------554210479999999998535999999999972998999999962888201236555262157899
Q gi|255764497|r 126 -LY-----------PGKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLV 193 (587)
Q Consensus 126 -~~-----------~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~ 193 (587)
+. ..+..++..++.+++..--.|.+.-..+|+++++|++++|++..+||+|||+.+||.+|.++|+++
T Consensus 147 ~~~~~iP~~~~~~~~~~~G~~~L~a~~vL~IMIlPt~as~s~D~~~~VP~~~kea~~ALGAT~wetI~~v~lP~a~~GIv 226 (317)
T TIGR02138 147 SNFGWIPLFGQLFSGPPNGYGLLTAGIVLAIMILPTIASISRDALRAVPRSYKEASLALGATKWETIRKVILPAARSGIV 226 (317)
T ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 31353232122368998316899999999999999999999999973556788898770686043355533200021899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999998998999997354
Q gi|255764497|r 194 WNMMMSMSGGWFFVVASEMIVVG 216 (587)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~g~~ 216 (587)
++..+.++.++++-++..|+.++
T Consensus 227 ~a~~LglGRAlGETmAV~mv~Gn 249 (317)
T TIGR02138 227 GAVVLGLGRALGETMAVAMVIGN 249 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999724
No 79
>PRK11268 pstA phosphate transporter permease subunit; Provisional
Probab=99.78 E-value=1.1e-15 Score=130.15 Aligned_cols=206 Identities=13% Similarity=0.049 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHH
Q ss_conf 00688999999999999999999731000011245436---678999854466775444699999999983155-66504
Q gi|255764497|r 374 QDVLYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFR---PHISSKIQPFAQLLAAFPANVFFPLVVSCVSYY-HLNPN 449 (587)
Q Consensus 374 ~~~~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~-~~~~~ 449 (587)
...+.+..+...|+..+.++..++..+|+..+.....+ ++..+.++...+.+..+|.+++..+....+... ...+.
T Consensus 74 ~~~gGi~~aivGTl~~~~~a~lia~Pigi~~aIyL~Eya~~~~~~~~ir~~i~~LagiPSIV~Glfg~~~~v~~~~~~s~ 153 (292)
T PRK11268 74 TEGGGLANAIAGSGLLILWATVVGTPLGIMAGIYLAEYGRKSWLAEVIRFINDILLSAPSIVVGLFVYTIVVAQMEHFSG 153 (292)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88876699999999999999999999999999999997686439999999999984274899999999999985212557
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 79999999999999999999999739989999999749887899899985745778999999999999999999998505
Q gi|255764497|r 450 LWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASW 529 (587)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~ 529 (587)
++..+...+..+|++.+++.++++++|+++.|+|..+|+++||+.+||++|.++|++++|.+++++.+..+.-.--+..+
T Consensus 154 lag~l~LaimilP~i~~~teeaL~~VP~~lreaa~ALGatkw~ti~~VvlP~A~~GI~tgviLaiaRa~GETApll~ta~ 233 (292)
T PRK11268 154 WAGVIALALLQVPIVIRTTENMLKLVPDSLREAAYALGTPKWKMISAITLKASVSGIMTGVLLAIARIAGETAPLLFTAL 233 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999999999959988999999879986576223760763779999999999999987999999983
Q ss_pred CCCCC------CCCCHHHHHHHHHHHCC--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56442------23783799999997349--7-98999999999999999999721578999876
Q gi|255764497|r 530 GHIHL------RTTGLGAYIAESTEKGS--F-PEVVLGVLIMCCFVLALNRFLWHPLYLYGTRC 584 (587)
Q Consensus 530 ~~~~~------~~~GlG~~i~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~r 584 (587)
++... ..+.+..+|++..+..+ . +..+++.+++.++++.+|.+- ++..||
T Consensus 234 ~~~~~~~~l~~p~~tLp~~Iy~~a~~p~~~~~~la~a~alvL~~~vL~lNi~a-----r~i~rr 292 (292)
T PRK11268 234 SNQFWSTDMMQPIANLPVTIFKFAMSPFAEWQQLAWAGVLLITLCVLLLNILA-----RVVFAK 292 (292)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHCC
T ss_conf 32347899787301548999998049647799999999999999999999999-----998559
No 80
>COG1176 PotB ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]
Probab=99.78 E-value=2.8e-16 Score=134.55 Aligned_cols=188 Identities=12% Similarity=0.135 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------C
Q ss_conf 89999999999999999997310000112454366-789998544667754446999999999831-------------5
Q gi|255764497|r 378 YVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRP-HISSKIQPFAQLLAAFPANVFFPLVVSCVS-------------Y 443 (587)
Q Consensus 378 ~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~-------------~ 443 (587)
..+.....|+..+.+.++++.++|+|.++...+.+ +.++.+.........+...+=....+..++ .
T Consensus 63 ~y~~v~~~Sl~iA~~~T~~~lligyP~Ay~la~~~~~~r~~ll~lvilPfwts~LiR~yawi~iL~~~G~iN~~L~~lGl 142 (287)
T COG1176 63 LYLTVLLRSLWIAALVTLICLLLGYPVAYFLARSPPRWRNLLLLLVILPFWTSLLIRTYAWIVILGRNGLINQALLALGL 142 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
T ss_conf 89999999999999999999999999999999677379999999999999899999999999998347716488997688
Q ss_pred CC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56-----6504799999999999999999999997399899999997498878998999857457789999999999999
Q gi|255764497|r 444 YH-----LNPNLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAW 518 (587)
Q Consensus 444 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~ 518 (587)
.. ...+.+.++..+-..+|+++....++++.+|+++.|||+++||++||+||||++|+.+|++.+|....|..|.
T Consensus 143 ~~~p~~ll~~~~aV~igmvy~~lPfmiLPly~al~~id~~L~eAA~dLGA~~~~~F~~VilPLs~pGi~aG~~lVFi~al 222 (287)
T COG1176 143 IDEPLRLLYTETAVIIGMVYIYLPFMILPLYAALEKIDPSLLEAARDLGASPFQTFRRVILPLSLPGIIAGSLLVFIPAL 222 (287)
T ss_pred CCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHEEECCCHHHHHHHHHHHHHHHH
T ss_conf 78867988053367689999865999999999998399789999987599765476420321771899999999989775
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999985055644223783799999997-349798999999999999999
Q gi|255764497|r 519 NASIVSEVASWGHIHLRTTGLGAYIAESTE-KGSFPEVVLGVLIMCCFVLAL 569 (587)
Q Consensus 519 ~~~~~ae~~~~~~~~~~~~GlG~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~ 569 (587)
...+..+++|+++ +.-+|..|+++.. ..|++...+..+++.+++...
T Consensus 223 G~fi~P~lLGG~~----~~~ig~lI~~q~~~~~nwp~asA~sv~L~~i~~~~ 270 (287)
T COG1176 223 GSFVTPALLGGPK----VLMIGNLIYQQFLSARNWPFASALAVVLLLVVLLL 270 (287)
T ss_pred HHHHHHHHHCCCC----CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 8899889856975----25399999999852058447899999999999999
No 81
>PRK10998 malG maltose transporter permease; Provisional
Probab=99.78 E-value=4e-16 Score=133.47 Aligned_cols=195 Identities=10% Similarity=0.005 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCC------CHH
Q ss_conf 899999999999999999973100001124543667-89998544667754446999999999831-5566------504
Q gi|255764497|r 378 YVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRPH-ISSKIQPFAQLLAAFPANVFFPLVVSCVS-YYHL------NPN 449 (587)
Q Consensus 378 ~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ip~~~~~~~~~~~~~-~~~~------~~~ 449 (587)
.......+|+..+..+.+++..++.+.|+...|.+. .++.+.........+|..+........+. .+.. +..
T Consensus 80 ~~~~~~~NSl~va~~~~v~~l~~~~~aaYalar~~f~g~~~l~~~~l~~~~iP~~~~~ip~~~~~~~lgl~~~~~~l~t~ 159 (296)
T PRK10998 80 PVLLWLWNSVKIAGITAIGIVALSTTCAYAFARMRFPGKATLLKGMLIFQMFPAVLSLVALYALFDRLGQYIPFIGLNTH 159 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 78999999999999999999999999999873121555899999999999988999999999999996020220133224
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HC
Q ss_conf 79999999999999999999999739989999999749887899899985745778999999999999999999998-50
Q gi|255764497|r 450 LWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEV-AS 528 (587)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~-~~ 528 (587)
.. ++.......|+.+....+.++++|+|+||||+.+|||+||+|+||++|+++|++.+..++++..+||+...+-. +.
T Consensus 160 ~~-ii~~~~~~~~~~i~ll~~ff~~iP~el~EAA~iDGas~~~~f~~IilPl~~P~i~t~~i~~fi~~WNef~~~ll~l~ 238 (296)
T PRK10998 160 GG-VIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLR 238 (296)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99-99999999999999999998629798999999859977779787678625999999999999999999999999908
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55644223783799999997349798999999999999999999721
Q gi|255764497|r 529 WGHIHLRTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFLWH 575 (587)
Q Consensus 529 ~~~~~~~~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 575 (587)
..+.... .+|-.-....+..|++.+.++.++..+=.+.+..++-|
T Consensus 239 ~~~~~tl--~v~l~~~~~~~~~~~g~~~A~~~i~~lP~lI~f~~~qr 283 (296)
T PRK10998 239 DVNSYTL--AVGMQQYLNPQNYLWGDFAAAAVLSALPITLVFLLAQR 283 (296)
T ss_pred CCCCEEH--HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9543009--99999986623564999999999999999999999999
No 82
>PRK10973 glycerol-3-phosphate transporter membrane protein; Provisional
Probab=99.77 E-value=2.4e-15 Score=127.80 Aligned_cols=196 Identities=12% Similarity=0.051 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCCHHHHHHHH
Q ss_conf 89999999999999999997310000112454366-7899985446677544469999-999998315566504799999
Q gi|255764497|r 378 YVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRP-HISSKIQPFAQLLAAFPANVFF-PLVVSCVSYYHLNPNLWLSLL 455 (587)
Q Consensus 378 ~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ip~~~~~-~~~~~~~~~~~~~~~~~~~~~ 455 (587)
.......+|+..+..+.++++.++...|+...|.+ +.++.+.........+|..+.. |...+.-..+..++..+.+..
T Consensus 72 ~f~~~~~NSliva~~~~~~~~~~~~~aaYalsr~~f~~~~~~~~~~l~~~~iP~~~~~iP~~~~~~~lgl~~t~~glil~ 151 (281)
T PRK10973 72 PFGRMLLNSFVMAFSITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLP 151 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 59999999999999999999999999999999840541999999999999989999999999999993971108999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCC
Q ss_conf 999999999999999997399899999997498878998999857457789999999999999999999985055-6442
Q gi|255764497|r 456 MIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWG-HIHL 534 (587)
Q Consensus 456 ~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~-~~~~ 534 (587)
... .+..+.-..+-++++|+|+||||+.+|||+||+|+||++|+++|++.+..++++..+||+...+-.+... +...
T Consensus 152 ~~~--~~~~i~l~~~f~~~IP~el~EAA~iDGas~~~~f~~IilPl~kP~i~tv~i~~fi~~WNef~~p~~~~~~~~~~t 229 (281)
T PRK10973 152 LMA--SATATFLFRQFFMTLPDELVEAARIDGAGPMRFFWDIVLPLSKTNLAALFVITFIYGWNQYLWPLLITTDASLGT 229 (281)
T ss_pred HHH--HHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 999--999999999999768888999999819867778154100265999999999999999997987788627853011
Q ss_pred CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23783799999997349798999999999999999999721
Q gi|255764497|r 535 RTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFLWH 575 (587)
Q Consensus 535 ~~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 575 (587)
...|+-.++..+....|++.++|+.++..+=.+.+..++-|
T Consensus 230 ~~~~l~~~~~~~~~~~~~~~~~A~~vl~~lP~li~y~~~Qk 270 (281)
T PRK10973 230 AVAGIKGMIATGEGTTEWNQVMAAMLLTLIPPVVIVLAMQR 270 (281)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999854677635999999999999999999999999
No 83
>TIGR00974 3a0107s02c phosphate ABC transporter, permease protein PstA; InterPro: IPR005672 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown , that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices,; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=99.77 E-value=1.4e-15 Score=129.51 Aligned_cols=170 Identities=18% Similarity=0.185 Sum_probs=139.9
Q ss_pred CCCCCCCHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33135203668707---4068999999999999999999999999999997150---26789999999997432899999
Q gi|255764497|r 44 VPRDIVDIVPITLD---VHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSR---RLGMVLVPILDIMQSIPILGFLT 117 (587)
Q Consensus 44 ~~~~~~~~~~~~~~---~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~---~~~~~~~~~l~~~~~iP~~~~~~ 117 (587)
..+..........+ .++..+.+.+|+.+...+.++|+.+|+..|+++..+. +..+.++-..+.+..+|++++..
T Consensus 39 ~~fft~~~~~~~~~~~~~GGi~~AivGT~~~~~~~~~ia~PlGi~~aiYL~EYa~~~~~~~~ir~~~~~LaG~PSIv~GL 118 (302)
T TIGR00974 39 LEFFTSSPTPTGTEGDGEGGIGPAIVGTLLLILLAIVIAVPLGIGAAIYLAEYAKEGRFTKFIRFAVDVLAGVPSIVVGL 118 (302)
T ss_pred CCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHH
T ss_conf 60045357777788888753367799999999999999999999988875530678940056878888752116999999
Q ss_pred HHHHHHHCCCC--CCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999840145--542104799999-999985359999999999729989999999628882012365552621578999
Q gi|255764497|r 118 FTVVYFMNLYP--GKVIGAELAAIF-AIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVW 194 (587)
Q Consensus 118 ~~~~~f~~~~~--~~~~~~~~~~i~-~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~ 194 (587)
+...+|..... .+.-.+-.+.-+ .+.....|.|.+.+.|+++.||+|++|||..+|++|||+.+||++|.++|+|++
T Consensus 119 Fg~~~fv~~~~i~l~~~~S~laG~~LaLa~L~LP~iirtTeEal~~VP~~~Reas~ALGa~Kw~TI~~~vLP~A~~GI~T 198 (302)
T TIGR00974 119 FGYALFVKTLGIYLGGGFSALAGALLALAILILPVIIRTTEEALKAVPKDLREASLALGATKWQTILKIVLPAALPGILT 198 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHEEEEEEECCCHHHHHH
T ss_conf 99999997768645220677879999999999999999989999724788889999726002113322441310368999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999989989999973
Q gi|255764497|r 195 NMMMSMSGGWFFVVASEMIV 214 (587)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~g 214 (587)
|.+++.+...++ .+|.++.
T Consensus 199 G~iL~iaR~~GE-TAPLl~T 217 (302)
T TIGR00974 199 GIILSIARAAGE-TAPLLFT 217 (302)
T ss_pred HHHHHHHHHHHH-HHHHHHH
T ss_conf 999999999998-9999999
No 84
>PRK11275 pstC phosphate transporter permease subunit; Provisional
Probab=99.76 E-value=6.3e-14 Score=117.48 Aligned_cols=206 Identities=14% Similarity=0.061 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------
Q ss_conf 8999999999999999999731000011245436--678999854466775444699999999983155-----------
Q gi|255764497|r 378 YVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFR--PHISSKIQPFAQLLAAFPANVFFPLVVSCVSYY----------- 444 (587)
Q Consensus 378 ~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~----------- 444 (587)
..+.....|+....++.+++..+|+..+.....+ ++.++.+.+..+.+..+|.+++..+....+...
T Consensus 70 Gi~~~i~GTl~~s~iAllia~Plgi~~Aiyl~eya~~~~~~~l~~~ielLagIPSVV~Gl~Gl~v~~p~~~~~~~~~~~~ 149 (319)
T PRK11275 70 GALVPIYGTLVTSFIALLIAVPVSFGIALFLTELAPGWLKRPLGIAIELLAAIPSIVYGMWGLFVFAPLFATYFQEPVGN 149 (319)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 82999999999999999999999999999999976685898999999998217589999999999999999875455654
Q ss_pred ----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf ----------------6650479999999999999999999999739989999999749887899899985745778999
Q gi|255764497|r 445 ----------------HLNPNLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVT 508 (587)
Q Consensus 445 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~ 508 (587)
.........++..+..+|++...+.++++++|++++|++..+|+++||+.+||++|.++|++++
T Consensus 150 ~~~~~~~~~~~~~~~~~G~s~l~a~i~LaiMilP~i~s~s~eal~~VP~~~reaa~ALGatrw~ti~~VvlP~a~~GI~~ 229 (319)
T PRK11275 150 ILSNIPIVGALFSGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIG 229 (319)
T ss_pred HCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 41210467776147764402899999999999999999999999968899999999839979999999999988868999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCC-------CCCCHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999850556442-------2378379999999734----979899999999999999999972157
Q gi|255764497|r 509 GAITACGGAWNASIVSEVASWGHIHL-------RTTGLGAYIAESTEKG----SFPEVVLGVLIMCCFVLALNRFLWHPL 577 (587)
Q Consensus 509 g~~~a~~~a~~~~~~ae~~~~~~~~~-------~~~GlG~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~l 577 (587)
|.+++++.+..|..+.-|+.+..... ..+.+...|.+..... .+...++..+++-++.+.+|.+- |-+
T Consensus 230 gviLg~gRAlGETmaV~mv~Gn~~~~~~~~lf~p~~Tlts~Ia~~~~ea~~g~~~~al~a~glvLfvit~i~N~~a-~~i 308 (319)
T PRK11275 230 GVMLGLGRALGETMAVTFIIGNTYQLDSASLYMPGNSITSALANEFAEAESGLHTAALMELGLILFVITFIVLAAS-KLM 308 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_conf 9999999999889999999278766898764565508999999963135774899999999999999999999999-999
Q ss_pred HHHHHHH
Q ss_conf 8999876
Q gi|255764497|r 578 YLYGTRC 584 (587)
Q Consensus 578 ~~~~~~r 584 (587)
.++.+||
T Consensus 309 v~R~~k~ 315 (319)
T PRK11275 309 IMRLAKN 315 (319)
T ss_pred HHHHHHH
T ss_conf 9998752
No 85
>COG2011 AbcD ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=5.6e-16 Score=132.39 Aligned_cols=198 Identities=18% Similarity=0.204 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCC
Q ss_conf 0689999999999999999999999999999971--------502678999999999743289999----9999998401
Q gi|255764497|r 59 HSLPQYASRTTLRMLSAMVISLLFTFVYATLAAK--------SRRLGMVLVPILDIMQSIPILGFL----TFTVVYFMNL 126 (587)
Q Consensus 59 ~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~--------~~~~~~~~~~~l~~~~~iP~~~~~----~~~~~~f~~~ 126 (587)
..+|+.+++|+.+...++.++.++|.|+|.+... ++...+.+..+..+.+++|-+... |+.....|..
T Consensus 12 ~~l~~a~~eTlyMv~~s~~~~~~iGlplGvlL~~T~~g~i~~n~~~~~il~~ivNi~Rs~PFiILlv~liP~Tr~ivGTs 91 (222)
T COG2011 12 QLLWRATLETLYMVFVSTLFAFLIGLPLGVLLFLTGPGGLLENKLLYRILSAIVNILRSIPFIILLVALIPLTRLIVGTS 91 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999999987663436781788613008899999999998751209999999998899997265
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45542104799999999985359999999999729989999999628882012365552621578999999999999899
Q gi|255764497|r 127 YPGKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFF 206 (587)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~ 206 (587)
+| ..++++-......|+..+.+-++++++|+.+.|||+++||++||..+||.+|-++|+++++..+....-.+.
T Consensus 92 -----iG-~~AAivPL~i~a~PF~ARlve~aL~EVd~GvIEAA~amGAs~~~II~kVlLpEa~p~li~g~Tvt~I~LIg~ 165 (222)
T COG2011 92 -----IG-TTAAIVPLTIGAAPFVARLVESALREVDKGVIEAAQAMGASPWQIIRKVLLPEALPGLVSGITVTLISLIGY 165 (222)
T ss_pred -----CC-CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf -----25-304774167888889999999999744725899999849988888787326213678998899999999808
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999735444203678899999986311325699999999999999999999898754443
Q gi|255764497|r 207 VVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQLLFRPMIVWSNK 269 (587)
Q Consensus 207 ~~~~~~~g~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 269 (587)
...+..+|+| |+|....+..++.....++....++.++.+-..|..-.++.++.+|
T Consensus 166 SAMAGaIGgG-------GLGdlAiryGY~Rf~~~Vm~~~viillilVq~iQ~~Gd~l~~r~~k 221 (222)
T COG2011 166 SAMAGAIGGG-------GLGDLAIRYGYQRFNTDVMVVAVVILLILVQLIQSLGDRLVRRLDK 221 (222)
T ss_pred HHHHCCCCCC-------CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 8883022667-------3369999987885588315799999999999999998999999714
No 86
>TIGR01183 ntrB nitrate ABC transporter, permease protein; InterPro: IPR005889 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry comprises of the nitrate transport permease in bacteria, the gene product of ntrB. The nitrate transport permease is the integral membrane component of the nitrate transport system and belongs to the ATP-binding cassette (ABC) superfamily. At least in photosynthetic bacteria nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA, ntrB, ntrC, ntrD, narB. Functionally ntrC and ntrD resemble the ATP binding components of the binding protein-dependent transport systems. Mutational studies have shown that ntrB and ntrC are mandatory for nitrate accumulation. Nitrate reductase is encoded by narB. ; GO: 0015112 nitrate transmembrane transporter activity, 0015706 nitrate transport, 0016021 integral to membrane.
Probab=99.74 E-value=7.1e-16 Score=131.62 Aligned_cols=190 Identities=24% Similarity=0.411 Sum_probs=177.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 74068999999999999999999999999999997150267899999999974328999999999984014554210479
Q gi|255764497|r 57 DVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVIGAEL 136 (587)
Q Consensus 57 ~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~~~~~~~ 136 (587)
.+.++.-....|+.|+..++..+.+.|+.+|.+.+.++...+.++|++++++.+||++|.|+.+..|.-. +.
T Consensus 11 ~~~Gl~~q~~~sl~rva~G~~~aa~~Gi~~G~~~G~~~~~~~~ldP~~q~lr~~~PlaW~Pi~l~~~~~~--------~~ 82 (203)
T TIGR01183 11 TDKGLFLQILASLTRVAVGYLLAAIVGIAVGILIGLSKLLNKALDPIFQVLRTVPPLAWLPIALAAFQDA--------QP 82 (203)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC--------CC
T ss_conf 4203799999999999999999999999999997468999874208999997515345788999998416--------86
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999853599999999997299899999996288820123655526215789999999999998998999997354
Q gi|255764497|r 137 AAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVG 216 (587)
Q Consensus 137 ~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~~ 216 (587)
+++++++....||+..++..|.+++|+|+.+.+|.+..|+-+.+.++.+|.+.|.+++|+.+..+.+|-...++|++..+
T Consensus 83 ~aifvifita~WPi~int~~G~~~~P~dy~nv~rvl~ls~~~y~~~~~~P~~~Py~f~Gl~i~~Gl~Wlai~aae~~~~~ 162 (203)
T TIGR01183 83 AAIFVIFITAIWPIIINTAVGVQQIPQDYNNVARVLKLSKSDYLLKVLLPAAVPYIFTGLRIAIGLSWLAIVAAEMLIGG 162 (203)
T ss_pred CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 31311248779899987666676311778999999998788888877754445689865899999999999999998605
Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4420367889999998631132569999999999999999999
Q gi|255764497|r 217 DTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQLL 259 (587)
Q Consensus 217 ~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 259 (587)
..|+|+.++++.++........++.-+..+.+.+|++.
T Consensus 163 -----~~GiGffiWday~~~~~s~~ila~~y~G~vGl~l~~~v 200 (203)
T TIGR01183 163 -----IVGIGFFIWDAYNSGSVSEIILAIIYVGLVGLLLDRLV 200 (203)
T ss_pred -----CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -----43012432222301430479999999999999999998
No 87
>TIGR02139 permease_CysT sulfate ABC transporter, permease protein CysT; InterPro: IPR011865 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CysT, one of two homologous, tandem permeases in the sulphate ABC transporter system; the other is CysW (IPR011866 from INTERPRO). The sulphate transporter has been described in Escherichia coli as transporting sulphate, thiosulphate, selenate, and selenite. Sulphate transporters may also transport molybdate ion if a specific molybdate transporter is not present.; GO: 0015116 sulfate transmembrane transporter activity, 0008272 sulfate transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=99.73 E-value=8.8e-18 Score=145.46 Aligned_cols=203 Identities=14% Similarity=0.132 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCC-------
Q ss_conf 88999999999999999999731000011245436678-999854466775444699999999983-155665-------
Q gi|255764497|r 377 LYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRPHI-SSKIQPFAQLLAAFPANVFFPLVVSCV-SYYHLN------- 447 (587)
Q Consensus 377 ~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ip~~~~~~~~~~~~-~~~~~~------- 447 (587)
.....+...|+..+..+..+-.+.|..+++...|++.. ++.+|-.+|...+.|..|-..-+.-.+ +.|+.+
T Consensus 46 P~vlaay~~sf~~Al~Aa~~N~vFG~l~AWVLVRY~FPGKri~DAlVDLPFALPTAVAGIaL~TlY~~NGWiG~~l~~lG 125 (265)
T TIGR02139 46 PRVLAAYKLSFGTALIAALINAVFGTLLAWVLVRYRFPGKRIVDALVDLPFALPTAVAGIALATLYAPNGWIGSFLEPLG 125 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCC
T ss_conf 89999999999999999999999999998898612475057776662335420347999999999628894012585549
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -----047999999999999999999999973998999999974988789989998574577899999999999999999
Q gi|255764497|r 448 -----PNLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASI 522 (587)
Q Consensus 448 -----~~~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~ 522 (587)
+..+++++.++..+|+++|++.-=+|.+|+|+||||.++|||+||+||||.+|...|+++||.-++|..+.-|.-
T Consensus 126 IKvAfTplGi~~Al~FvsLPFVVRTVQPVL~e~~~E~EEAA~~LGAS~w~tF~~vilP~L~PALLTG~ALaFARa~GEYG 205 (265)
T TIGR02139 126 IKVAFTPLGIVVALVFVSLPFVVRTVQPVLEEIEKELEEAAASLGASRWQTFWKVILPALLPALLTGFALAFARAVGEYG 205 (265)
T ss_pred CEEEEECCCEEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHCCCCHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 87887201014342332588257311430005886489997651688200022233144400699978998875432333
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998505564422378379999999734979899999---9999999999999721578999876
Q gi|255764497|r 523 VSEVASWGHIHLRTTGLGAYIAESTEKGSFPEVVLGV---LIMCCFVLALNRFLWHPLYLYGTRC 584 (587)
Q Consensus 523 ~ae~~~~~~~~~~~~GlG~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~r 584 (587)
--.++ .||+-..+-=.--+|..-.+++||....+-. ++++.+.+++ .+-++.+.+||
T Consensus 206 SViFI-AGN~P~~tEI~PLLI~~kLEqYDY~gATaIA~vmL~~SF~~Ll~----IN~lQ~~~~r~ 265 (265)
T TIGR02139 206 SVIFI-AGNLPMKTEIAPLLIFIKLEQYDYAGATAIAVVMLLISFVLLLF----INLLQWRALRY 265 (265)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCCC
T ss_conf 00022-26888067889999977754412378999999999999999999----99999975069
No 88
>PRK10999 malF maltose transporter membrane protein; Provisional
Probab=99.73 E-value=5.7e-15 Score=125.05 Aligned_cols=197 Identities=13% Similarity=0.098 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------
Q ss_conf 8899999999999999999973100001124543-667899985446677544469999999998315------------
Q gi|255764497|r 377 LYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGF-RPHISSKIQPFAQLLAAFPANVFFPLVVSCVSY------------ 443 (587)
Q Consensus 377 ~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~------------ 443 (587)
+..+.....|+.-+..++.....+|+.++..... .-+.++..+.......++|..+-....-..|..
T Consensus 281 ~pf~~v~~WT~~fa~~sv~~~~~lGl~lAllln~~~~rgr~~~R~l~ilP~avP~~is~lvw~~mfn~~~G~iN~~L~~l 360 (520)
T PRK10999 281 KPFIAIFVWTVVFSLLTVVFTVAVGMVLACLVQWEALKGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSAL 360 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC
T ss_conf 13566676678999999999999999999982875666076899999999899999999999984288865799999980
Q ss_pred ------CCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ------566504799999999---99999999999999739989999999749887899899985745778999999999
Q gi|255764497|r 444 ------YHLNPNLWLSLLMIF---GTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITAC 514 (587)
Q Consensus 444 ------~~~~~~~~~~~~~~~---~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~ 514 (587)
...++.++...++++ ..+||.+....+++|+||+|+.|||+.+||++||.||+|++|+++|.+.--.+.++
T Consensus 361 ~g~~~~Wl~dp~~A~~~viiv~~W~g~p~~~i~~la~Lq~IP~~lyEAA~iDGA~~~~~f~~ITlPll~~~~~~lli~~~ 440 (520)
T PRK10999 361 FGIKPAWFSDPTTARTMILIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASF 440 (520)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHEEEEECCCCHHHHHHHHHHHH
T ss_conf 59998634796999999999999951729999999987159989999998529656504514672023588999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCC--------CCCCHHHHHHH-HHHH---CCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999850556442--------23783799999-9973---497989999999999999999997
Q gi|255764497|r 515 GGAWNASIVSEVASWGHIHL--------RTTGLGAYIAE-STEK---GSFPEVVLGVLIMCCFVLALNRFL 573 (587)
Q Consensus 515 ~~a~~~~~~ae~~~~~~~~~--------~~~GlG~~i~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~l~ 573 (587)
..++|.....-++.+|+... +++-+-.++++ +.+. .|++...+..+++-+++..+..+-
T Consensus 441 i~~fn~F~~I~llT~GGP~~~~~~~pag~TdiLv~y~Y~~aF~~~~~~~~G~ASAis~iiFiiv~~~s~i~ 511 (520)
T PRK10999 441 AFNFNNFVLIQLLTNGGPDMIGTTTPAGYTDLLVSYTYRIAFEGGGGQDFGLAAAIATLIFLLVGALALLN 511 (520)
T ss_pred HHHHHCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99962525776434899887778888850767999999999824776455099999999999999999999
No 89
>COG2011 AbcD ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=2.9e-15 Score=127.17 Aligned_cols=201 Identities=16% Similarity=0.174 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH--------HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Q ss_conf 006889999999999999999997310000112454--------3667899985446677544469999999998----3
Q gi|255764497|r 374 QDVLYVIWLGCITMFRVVVLIIIASIIWIPVGIWIG--------FRPHISSKIQPFAQLLAAFPANVFFPLVVSC----V 441 (587)
Q Consensus 374 ~~~~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~----~ 441 (587)
..+..++.+...|+..+..+..++.++|.|+|.... .++...+.+....+..+++|-+.++...+.+ .
T Consensus 9 ~~~~~l~~a~~eTlyMv~~s~~~~~~iGlplGvlL~~T~~g~i~~n~~~~~il~~ivNi~Rs~PFiILlv~liP~Tr~iv 88 (222)
T COG2011 9 DLWQLLWRATLETLYMVFVSTLFAFLIGLPLGVLLFLTGPGGLLENKLLYRILSAIVNILRSIPFIILLVALIPLTRLIV 88 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 57999999999999999999999999987663436781788613008899999999998751209999999998899997
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 15566504799999999999999999999997399899999997498878998999857457789999999999999999
Q gi|255764497|r 442 SYYHLNPNLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNAS 521 (587)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~ 521 (587)
|... + ..+.+....+.+.||..|-+.++++++|+.+.|||+++||++||..+||.+|-++|+++.|....+..=....
T Consensus 89 GTsi-G-~~AAivPL~i~a~PF~ARlve~aL~EVd~GvIEAA~amGAs~~~II~kVlLpEa~p~li~g~Tvt~I~LIg~S 166 (222)
T COG2011 89 GTSI-G-TTAAIVPLTIGAAPFVARLVESALREVDKGVIEAAQAMGASPWQIIRKVLLPEALPGLVSGITVTLISLIGYS 166 (222)
T ss_pred HCCC-C-CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 2652-5-3047741678888899999999997447258999998499888887873262136789988999999998088
Q ss_pred HHHHHHCCCCCCCCCCCHHHHHH-HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998505564422378379999-9997349798999999999999999999721578999876
Q gi|255764497|r 522 IVSEVASWGHIHLRTTGLGAYIA-ESTEKGSFPEVVLGVLIMCCFVLALNRFLWHPLYLYGTRC 584 (587)
Q Consensus 522 ~~ae~~~~~~~~~~~~GlG~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~r 584 (587)
-.|..+|+| |||..-. ++.+++|.+-+...++++.+++.++- .+-+++.++..||
T Consensus 167 AMAGaIGgG-------GLGdlAiryGY~Rf~~~Vm~~~viillilVq~iQ-~~Gd~l~~r~~kr 222 (222)
T COG2011 167 AMAGAIGGG-------GLGDLAIRYGYQRFNTDVMVVAVVILLILVQLIQ-SLGDRLVRRLDKR 222 (222)
T ss_pred HHHCCCCCC-------CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCC
T ss_conf 883022667-------3369999987885588315799999999999999-9989999997149
No 90
>COG4135 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=99.72 E-value=6.5e-12 Score=102.87 Aligned_cols=423 Identities=14% Similarity=0.070 Sum_probs=226.6
Q ss_pred CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 2036687074068999999999999999999999999999997150267-899999999974328999999999984014
Q gi|255764497|r 49 VDIVPITLDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLG-MVLVPILDIMQSIPILGFLTFTVVYFMNLY 127 (587)
Q Consensus 49 ~~~~~~~~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~~-~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~ 127 (587)
+..+.++.++.++.+.+..|+.-...++..++.+.... ..+..+.++ +.+...++.+.++|..+.+..+..+|..++
T Consensus 42 wq~fae~a~~q~~~~alL~~l~stl~~tv~Alli~~~~--i~~fw~~P~w~Ri~~~ls~LLAiPHvAfA~~~a~LfA~~G 119 (551)
T COG4135 42 WQAFAEFADPQHLPQALLATLVSTLIATVGALLIALLV--IVAFWPGPKWQRICHRLSWLLAIPHVAFATSAALLFADGG 119 (551)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCH
T ss_conf 98899861864228999999999999999999999999--9996489719999864008874548999999999945840
Q ss_pred C-------------CC--C-C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 5-------------54--2-1---047999999999853599999999997299-8999999962888201236555262
Q gi|255764497|r 128 P-------------GK--V-I---GAELAAIFAIFTSQVWNMTFSMYQSLCNIP-RDLEEVSRSFRLSGWQKFWYLGVPF 187 (587)
Q Consensus 128 ~-------------~~--~-~---~~~~~~i~~~~~~~~~~i~~~~~~~l~~i~-~~l~eaa~~~Ga~~~~~f~~v~lP~ 187 (587)
. .+ . + --..+.......--.|+...-....+.+.. .+....+.++|-|+||-++-..+|.
T Consensus 120 ~L~RLly~~f~~ft~p~d~~L~~Dpfaigl~~~La~KEvpFllli~la~L~ql~lt~~~~l~asLGYsr~q~~~w~l~P~ 199 (551)
T COG4135 120 FLLRLLYDYFPYFTPPPDWLLPMDPFAIGLGATLAVKEVPFLLLILLAVLSQLALTQQVILLASLGYSRWQCLNWLLLPS 199 (551)
T ss_pred HHHHHHCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHEEHHH
T ss_conf 78988414777778980213568814667788988841319999999987687899999999973666343202100387
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHH-------HHHHHH
Q ss_conf 1578999999999999899899999735444203678899999986311325---699999999999-------999999
Q gi|255764497|r 188 SMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLL---AILYAMLTMLGV-------IFLYDQ 257 (587)
Q Consensus 188 ~~P~i~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~~~~~~---~~~~~~~~i~~~-------~~~~~~ 257 (587)
..+.+--.+.-+..++.+...++.++| +++..+...+-. +-.++.|.+ ....+..+.+.+ .+.++.
T Consensus 200 ~~r~ir~~~fAv~ays~SVVDva~iLG-P~~PPTl~V~vw---QW~~~~Dl~~~~~aa~ga~lllllvvaalaa~vaLe~ 275 (551)
T COG4135 200 VARAIRMAMFAVVAYSLSVVDVAIILG-PGNPPTLAVIVW---QWLTQGDLDQQTKAALGALLLLLLVVAALAAYVALEY 275 (551)
T ss_pred HHHHHHHHHHHHHHHHHHEEEEEEEEC-CCCCCCEEEEEE---EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999999998641015778746-998995047754---3047876003557778889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99989875444321222100112102456555778998888878889999999999987665654200023445544321
Q gi|255764497|r 258 LLFRPMIVWSNKFRLERTTGIYPADSWVLYLFRKTNFLRFIGYSSWNFFSPLSNNVKKLCRTLGVIRFHFPENFLQLCSN 337 (587)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 337 (587)
+..+-..+|.+..+... .+..++....... .......++
T Consensus 276 l~ka~~r~w~~sGr~~~-dg~~k~a~~Ll~t------------it~a~~lpL---------------------------- 314 (551)
T COG4135 276 LLKAVWRRWRRSGRPRV-DGVRKPATPLLPT------------ITLAAFLPL---------------------------- 314 (551)
T ss_pred HHHHHHHHHHHCCCCCC-CCCCCCCCHHHHH------------HHHHHHCHH----------------------------
T ss_conf 99999999876488678-7654653002146------------788865629----------------------------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHH
Q ss_conf 01223135899877888999998754321000000000----68899999999999999999973100001124543667
Q gi|255764497|r 338 QRVSYMLDIFWFCVVCGVAIGIAWQSIGYIVNHFTYQD----VLYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRPH 413 (587)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~~ 413 (587)
....+....|......+.+...+. +...+.....+...+..+-.++...++..-.+.+...+
T Consensus 315 --------------t~iwsva~lw~fpD~lP~q~T~n~W~~~~P~~l~n~~T~vllAlsasslALll~iL~le~~~~~qR 380 (551)
T COG4135 315 --------------TSIWSVALLWIFPDALPGQSTPNTWINSLPEALINSLTMVLLALSASSLALLLLILWLEWGGIPQR 380 (551)
T ss_pred --------------HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHH
T ss_conf --------------999999875007665877778741787559998745659999972045999999999995798320
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHH
Q ss_conf 89-99854466775444699999999983155665047999999999999999999999973998999999974988789
Q gi|255764497|r 414 IS-SKIQPFAQLLAAFPANVFFPLVVSCVSYYHLNPNLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWR 492 (587)
Q Consensus 414 ~~-~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~ 492 (587)
.. ....-....++.++-+...-...++.+.. ++..+.+..+.+..+|+++......-|++|++.+.-|+++|-+++|
T Consensus 381 ~~~~~~l~LP~LlP~lslvfG~qvL~L~~~l~--~~w~~Vvw~H~~fv~P~v~l~Ls~pWq~~dsrf~kIA~~lGks~~~ 458 (551)
T COG4135 381 RQAYLWLWLPILLPALSLVFGQQVLALWLGLD--GSWTAVVWGHLLFVMPWVLLILSPPWQRIDSRFIKIAQTLGKSRAK 458 (551)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHCCHHHHHCHHHHHHHHHHCCCHHH
T ss_conf 11068888888766778998899999996268--7439999999999999999984745755270899999870830667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 989998574577899999999999999999999850556442
Q gi|255764497|r 493 WWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGHIHL 534 (587)
Q Consensus 493 ~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~~~~~ 534 (587)
+|++|.+|++.|..+.++-.+|..+..-..-.-++|.|.-.+
T Consensus 459 Iff~vklPLlfra~L~A~AVGfaVsiaqYlPTL~lG~GRltT 500 (551)
T COG4135 459 IFFYVKLPLLFRACLIAFAVGFSVSIAQYLPTLWLGAGRLTT 500 (551)
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 888750457679999999987674299761478226776641
No 91
>PRK10561 glycerol-3-phosphate transporter permease; Provisional
Probab=99.72 E-value=3.9e-15 Score=126.25 Aligned_cols=202 Identities=14% Similarity=0.035 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------------
Q ss_conf 99999999999999999731000011245436678999854466775444699999999983155---------------
Q gi|255764497|r 380 IWLGCITMFRVVVLIIIASIIWIPVGIWIGFRPHISSKIQPFAQLLAAFPANVFFPLVVSCVSYY--------------- 444 (587)
Q Consensus 380 ~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~--------------- 444 (587)
+.+..+|+.-..........+++.++....+..+.++..+........+|+.+........+...
T Consensus 54 ~~~~~ntl~~~~~~~~~~~~l~l~lA~ll~~~~~~~~~~r~~~~lP~~i~~vv~~~~w~~l~~~~~G~~n~~l~~~g~~~ 133 (280)
T PRK10561 54 LDSFWTTIKFSALVTVSGLLVSLFFAALVDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGYDW 133 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
T ss_conf 99999999999999999999999999998610207899999999875531999999999996987108999998657777
Q ss_pred --CCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf --6650479---9999999999999999999997399899999997498878998999857457789999999999999-
Q gi|255764497|r 445 --HLNPNLW---LSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAW- 518 (587)
Q Consensus 445 --~~~~~~~---~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~- 518 (587)
..+...+ .+...+....|+......+|+++||+|++|||+.+|||+||+||+|++|+++|.+..........+.
T Consensus 134 ~~~~~~~~a~~~vi~~~vW~~~g~~~li~lagL~~Ip~~l~EAA~iDGA~~~q~f~~ItlPll~p~~~~~~i~~~i~~~~ 213 (280)
T PRK10561 134 NHAQNSGQAMFLVVFASVWKQISYNFLFFYAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYAFF 213 (280)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_conf 54467489999999999999989999999999857997799999976997752331230461059999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999985055644223783799999-9973497989999999999999999997215789998763
Q gi|255764497|r 519 NASIVSEVASWGHIHLRTTGLGAYIAE-STEKGSFPEVVLGVLIMCCFVLALNRFLWHPLYLYGTRCL 585 (587)
Q Consensus 519 ~~~~~ae~~~~~~~~~~~~GlG~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~r~ 585 (587)
+..-..-...+|+...+++-+..++++ +.+.+|++...|..+++.++.+.+..+..| +.+||-
T Consensus 214 ~~f~~i~~~t~GGP~~~t~~l~~~iy~~~f~~~~~g~asA~svil~~i~~~~~~i~~r----~~~rkv 277 (280)
T PRK10561 214 DTFPVIDAATSGGPVQATTTLIYKIYREGFTGLDLSSSAAQSVVLMFLVIVLTVVQFR----YVESKV 277 (280)
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHCCE
T ss_conf 6568886436888852889999999999987599619999999999999999999999----983211
No 92
>TIGR00974 3a0107s02c phosphate ABC transporter, permease protein PstA; InterPro: IPR005672 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown , that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices,; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=99.71 E-value=4e-15 Score=126.19 Aligned_cols=205 Identities=18% Similarity=0.104 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CCCC
Q ss_conf 889999999999999999997310000112454366---7899985446677544469999999998315------5665
Q gi|255764497|r 377 LYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRP---HISSKIQPFAQLLAAFPANVFFPLVVSCVSY------YHLN 447 (587)
Q Consensus 377 ~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~------~~~~ 447 (587)
+.+..+...|+.-..++.+++..+|+..|++..++. +..+.++...+.+..+|.+++..+...+|.. .+..
T Consensus 57 GGi~~AivGT~~~~~~~~~ia~PlGi~~aiYL~EYa~~~~~~~~ir~~~~~LaG~PSIv~GLFg~~~fv~~~~i~l~~~~ 136 (302)
T TIGR00974 57 GGIGPAIVGTLLLILLAIVIAVPLGIGAAIYLAEYAKEGRFTKFIRFAVDVLAGVPSIVVGLFGYALFVKTLGIYLGGGF 136 (302)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 53367799999999999999999999988875530678940056878888752116999999999999977686452206
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf 047999-999999999999999999973998999999974988789989998574577899999999999999999999-
Q gi|255764497|r 448 PNLWLS-LLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSE- 525 (587)
Q Consensus 448 ~~~~~~-~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae- 525 (587)
+..+.. ....+..+|.++|++.++++.||++++|||-.+|++||||.+||+||.++|||+||.+++.+.+.-|.=.--
T Consensus 137 S~laG~~LaLa~L~LP~iirtTeEal~~VP~~~Reas~ALGa~Kw~TI~~~vLP~A~~GI~TG~iL~iaR~~GETAPLl~ 216 (302)
T TIGR00974 137 SALAGALLALAILILPVIIRTTEEALKAVPKDLREASLALGATKWQTILKIVLPAALPGILTGIILSIARAAGETAPLLF 216 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77879999999999999999989999724788889999726002113322441310368999999999999998999999
Q ss_pred ------HHCCCC---------------CCCCCCCHHHHHHHHHHH----CCHH----HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ------850556---------------442237837999999973----4979----89999999999999999997215
Q gi|255764497|r 526 ------VASWGH---------------IHLRTTGLGAYIAESTEK----GSFP----EVVLGVLIMCCFVLALNRFLWHP 576 (587)
Q Consensus 526 ------~~~~~~---------------~~~~~~GlG~~i~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~l~~~~ 576 (587)
.....+ -......|..+||+.... .+.+ ..+++.+++.++++.+|..=
T Consensus 217 TA~~~~~~~~~~~~~N~~~~~p~~~d~l~~~~~~L~~~iY~~~~~~~~~~~~~~~~~~a~~aalvL~~~vl~~N~~a--- 293 (302)
T TIGR00974 217 TAGGSSSFLLGNSVLNDLPKAPLGEDLLLSPPAALPVLIYNLASELANAPYSEARNELAWAAALVLIVLVLLLNLIA--- 293 (302)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_conf 99988776410356677767777754225764136888887640146788426888999999999999999999999---
Q ss_pred HHHHHHHHHC
Q ss_conf 7899987633
Q gi|255764497|r 577 LYLYGTRCLR 586 (587)
Q Consensus 577 l~~~~~~r~~ 586 (587)
++..||+|
T Consensus 294 --~~~~~~~~ 301 (302)
T TIGR00974 294 --RLLRRRFK 301 (302)
T ss_pred --HHHHHHHC
T ss_conf --99997524
No 93
>COG1175 UgpA ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]
Probab=99.70 E-value=3.4e-13 Score=112.20 Aligned_cols=202 Identities=16% Similarity=0.087 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------
Q ss_conf 8899999999999999999973100001124543667899985446677544469999999998315-------------
Q gi|255764497|r 377 LYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRPHISSKIQPFAQLLAAFPANVFFPLVVSCVSY------------- 443 (587)
Q Consensus 377 ~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~------------- 443 (587)
...+.+..+|+..+..++.....+|..++....+..+.++..+........+|..+........+..
T Consensus 64 ~~f~~al~nT~~~~~~~v~~~~~lgl~lAlll~~~~~g~~~~r~~~~lP~~~~~vv~~~iw~~l~~~~~G~~n~~l~~~g 143 (295)
T COG1175 64 PTFWNALKNTLVFTVISVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWAISSVVAGLIWKWLFNPSFGLLNSLLLLLG 143 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 47999999999999999999999999999998470447999999999998999999999999998876358999999805
Q ss_pred -C-----CCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -5-----66504---79999999999999999999999739989999999749887899899985745778999999999
Q gi|255764497|r 444 -Y-----HLNPN---LWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITAC 514 (587)
Q Consensus 444 -~-----~~~~~---~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~ 514 (587)
. ..+.. ...++..+-...|+...-..+|+|+||+|+.|||+.+||++||+||||++|+++|.+.......+
T Consensus 144 l~~~~~wl~~~~~A~~~iii~~vW~~~~f~mli~lAgLq~Ip~~lyEAA~iDGA~~~q~f~~ItlP~l~p~i~~~~i~~~ 223 (295)
T COG1175 144 LIPDINWLSDPNTALFAVIIVSVWKGTGFVMLLFLAGLQSIPKELYEAARIDGASPWQRFRKITLPLLRPVIFFVLILRT 223 (295)
T ss_pred CCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 75556341390699999999999999849999999999569999999995899964365454104410279999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999985055644223783799999-997349798999999999999999999721578
Q gi|255764497|r 515 GGAWNASIVSEVASWGHIHLRTTGLGAYIAE-STEKGSFPEVVLGVLIMCCFVLALNRFLWHPLY 578 (587)
Q Consensus 515 ~~a~~~~~~ae~~~~~~~~~~~~GlG~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 578 (587)
..+++.--..-.+.+|+...++.-+..++++ +.+..|++...+..+++.++++.+.....|...
T Consensus 224 i~~~~~Fd~i~~lT~GGP~~~T~~l~~~~y~~af~~~~~G~asA~avil~~i~~~~~~~~~~~~~ 288 (295)
T COG1175 224 IFAFQVFDLIYLLTGGGPGNATTTLAYYIYRTAFGGLDFGYAAAIAVILFLIVLILTVVQLRLLR 288 (295)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999736999980799962255999999999870066648999999999999999999999987
No 94
>COG4208 CysW ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.69 E-value=5.8e-16 Score=132.29 Aligned_cols=202 Identities=16% Similarity=0.102 Sum_probs=153.9
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-
Q ss_conf 6687074068999999999999999999999999999997150267-89999999997432899999999998401455-
Q gi|255764497|r 52 VPITLDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLG-MVLVPILDIMQSIPILGFLTFTVVYFMNLYPG- 129 (587)
Q Consensus 52 ~~~~~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~~-~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~- 129 (587)
+.....+++-++.+..|+..+..+.-+-+++|+..||+.+|+++++ +.+..++|++.++.|.+-...++++||..+..
T Consensus 54 ~~~~~~~PdalsAi~LTllva~I~VPlN~vFGv~aAW~iakf~F~Gk~lL~tlIDlPFsVSPVvaGl~~vLl~g~~g~lG 133 (287)
T COG4208 54 FLAALSDPDALSAIKLTLLVALIAVPLNVVFGVAAAWAIARFEFPGKALLLTLIDLPFSVSPVVAGLVYVLLFGSNGWLG 133 (287)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCH
T ss_conf 99984696689999999999986300789999999999997058844466565437774227998789999870566320
Q ss_pred --------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --------421047999999999853599999999997299899999996288820123655526215789999999999
Q gi|255764497|r 130 --------KVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMS 201 (587)
Q Consensus 130 --------~~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~ 201 (587)
+.+....+++.+..+..+|++.+-...-+++..++-||||.++|+|.||+|||||+|..+=++..|..+.-.
T Consensus 134 ~wl~~~~iqIiFa~PGiVLaT~FVT~PFVaREliPlmq~qG~~eEeAA~~LGAsgWQtFwrVTLPnIkWgLlYGvvL~nA 213 (287)
T COG4208 134 GWLEAHDIQIIFAVPGIVLATIFVTCPFVARELIPLMQEQGTDEEEAALTLGASGWQTFWRVTLPNIRWGLLYGVVLTNA 213 (287)
T ss_pred HHHHHCCCEEEEECCCCEEEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCH
T ss_conf 78885794699954741354522216128989879998839848899987262301102567547307999888987160
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 99899899999735444203678899999986311325699999999999999
Q gi|255764497|r 202 GGWFFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFL 254 (587)
Q Consensus 202 ~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 254 (587)
.+.++|++.....+.-. ....++--++..-.++.+....++....+.+++++
T Consensus 214 RamGEFGAVsVVSG~Ir-G~TnTlPL~VEily~eY~~~~AFa~AslLallAlv 265 (287)
T COG4208 214 RAMGEFGAVSVVSGHIR-GETNTLPLHVEILYNEYNTVGAFAAASLLALLALV 265 (287)
T ss_pred HHHCCCCCEEEEECCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 55416773699844524-77665230169887644688999999999999999
No 95
>TIGR00969 3a0106s02 sulfate ABC transporter, permease protein; InterPro: IPR005667 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown , that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices, This entry describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulphate ABC transporter; GO: 0015563 uptake transmembrane transporter activity, 0006810 transport, 0016020 membrane.
Probab=99.68 E-value=1.9e-17 Score=142.96 Aligned_cols=191 Identities=15% Similarity=0.130 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCC--------
Q ss_conf 8999999999999999999731000011245436678-999854466775444699999999983155-665--------
Q gi|255764497|r 378 YVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRPHI-SSKIQPFAQLLAAFPANVFFPLVVSCVSYY-HLN-------- 447 (587)
Q Consensus 378 ~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~-~~~-------- 447 (587)
....+...|+..+.++..+-.+.|+..++...|++.. ++.++-..|...++|+.+-.-.+...+|.. ..+
T Consensus 66 ~~~~A~~lT~~~aliav~lN~vFG~~~AWvLtR~~FPGr~lLda~~DLPFAlspvVAGL~l~llYg~~Gw~G~~~~~fgi 145 (280)
T TIGR00969 66 NAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLLDALIDLPFALSPVVAGLTLALLYGSNGWLGSWLASFGI 145 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHEEEEEECCCCCCCCHHHHCCC
T ss_conf 89999999999999999999999999999997126982589999862133425067533000453577851132301786
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ----0479999999999999999999999739989999999749887899899985745778999999999999999999
Q gi|255764497|r 448 ----PNLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIV 523 (587)
Q Consensus 448 ----~~~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ 523 (587)
+..++..+.++.++|+++|.+.-=++...+|.||||+++||++||+||||+||.++|++++|..+++..|.-|--
T Consensus 146 qI~F~~~G~~lAmiFvs~PFVvRev~PVL~Elg~e~EEAA~tLGA~~WQtFwRV~LP~i~w~llyGv~Lt~aRAlGEFG- 224 (280)
T TIGR00969 146 QIIFTWPGVALAMIFVSLPFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFG- 224 (280)
T ss_pred EEEEECCCEEEEEEEECCCCEEEEECCCHHHCCCCHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCE-
T ss_conf 8998412146665342168045431001341385578999862899830267876688726788867876556543011-
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9985055644223783799999997349798999999999999999
Q gi|255764497|r 524 SEVASWGHIHLRTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLAL 569 (587)
Q Consensus 524 ae~~~~~~~~~~~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (587)
|..+..||..--+.-+--+|.+..+++||...++...++..+.+.+
T Consensus 225 aV~~vSgni~gkt~~lplli~~~l~~Yd~~gA~~ia~vL~l~slv~ 270 (280)
T TIGR00969 225 AVVVVSGNIPGKTLTLPLLIFERLEQYDYPGAYVIAAVLLLVSLVT 270 (280)
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 0789944688631201566444766036078999999999999999
No 96
>TIGR01097 3A0109s02M phosphonate ABC transporter, permease protein; InterPro: IPR005769 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown , that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices. These proteins represent a family of phosphonate uptake transporters., probably responsible for the transport of phosphonate across the inner membrane. ; GO: 0015604 phosphonate transmembrane transporter activity, 0015716 phosphonate transport, 0005887 integral to plasma membrane.
Probab=99.67 E-value=2.3e-14 Score=120.69 Aligned_cols=185 Identities=18% Similarity=0.230 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 99999999999999999999999999999715----02678999999999743289999999999840145542104799
Q gi|255764497|r 62 PQYASRTTLRMLSAMVISLLFTFVYATLAAKS----RRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVIGAELA 137 (587)
Q Consensus 62 ~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~----~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~~~~~~~~ 137 (587)
.+....|+..++.++.+++.+|++++.++++| +|.+..++.+.++.+++|..+.+-+++...+.|+ .+
T Consensus 2 ~~~M~~T~~IA~~~T~~~V~l~~~l~ll~A~NL~Pn~W~~~~VRRLM~~~RA~~E~V~A~lF~~~~~LGP--------~~ 73 (192)
T TIGR01097 2 LTKMLVTLNIAVFSTILAVVLSIILGLLAAKNLVPNPWVRQIVRRLMDILRAINEVVIAGLFLVILSLGP--------IA 73 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------HH
T ss_conf 5689999999999999999999999998675258884210478999999977679999999999995051--------89
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999998535999999999972998999999962888201236555262157899999999999989989999973544
Q gi|255764497|r 138 AIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGD 217 (587)
Q Consensus 138 ~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~~~ 217 (587)
.+.+++.|+....-+...|..+++|++.+|--|..|||+..+.|.-.+|+.+|-+.+..++.+..+.+...+..++|+|
T Consensus 74 ~~~A~~IHT~G~L~KLl~E~VE~~~~~P~EG~RA~GAN~~E~~~yG~~PQVlP~l~SY~L~RlE~NVR~~T~~G~VG~G- 152 (192)
T TIGR01097 74 AVLALFIHTIGVLSKLLFEVVEAIDMKPVEGLRAVGANKLERVLYGVLPQVLPLLISYFLLRLEINVRAATVVGAVGAG- 152 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-
T ss_conf 9999999999899999999986158989766523330378899960102676889999999998865555653044787-
Q ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 42036788999999863113256999999999999999999998
Q gi|255764497|r 218 TVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQLLFR 261 (587)
Q Consensus 218 ~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 261 (587)
|+|.....+..+.+..+..+..+.+...+.++|++..|
T Consensus 153 ------GIG~~L~~~I~~~~~~~T~A~~~L~~~T~~~~D~lS~~ 190 (192)
T TIGR01097 153 ------GIGVLLRLAIRQFQEAKTLALVLLLIVTVFLLDFLSAR 190 (192)
T ss_pred ------CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ------27689999860330688999999999999999998774
No 97
>COG0573 PstC ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.66 E-value=3e-14 Score=119.81 Aligned_cols=205 Identities=19% Similarity=0.151 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH-C-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCC
Q ss_conf 8899999999999999999973100001124543-6-6-78999854466775444699999999983--------1556
Q gi|255764497|r 377 LYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGF-R-P-HISSKIQPFAQLLAAFPANVFFPLVVSCV--------SYYH 445 (587)
Q Consensus 377 ~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~-~-~-~~~~~~~~~~~~~~~ip~~~~~~~~~~~~--------~~~~ 445 (587)
-..+.....|+....++.+++.-+|+..+..+.. . + +.++.+.+..+.+..+|.+++..+....+ +...
T Consensus 75 ~G~l~~i~GTli~s~iA~liAvP~gi~~Aifl~E~~~p~~~r~~l~~~iElLAgIPSVVYG~fgl~vl~P~l~~~~~~~~ 154 (310)
T COG0573 75 YGALPPIAGTLITSLIALLIAVPVGIGTAIFLSEYAPPRRLRRVLKPAIELLAGIPSVVYGFFGLFVLAPFLRDVFGPPL 154 (310)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 56499999999999999999987888968887763582878888999999981697117789999999999999852200
Q ss_pred CC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 65-------04799999999999999999999997399899999997498878998999857457789999999999999
Q gi|255764497|r 446 LN-------PNLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAW 518 (587)
Q Consensus 446 ~~-------~~~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~ 518 (587)
.. ......++..+..+|++.--+.+.++++|++++|++..+||++||+.+||++|.++|++++|..++++.|+
T Consensus 155 ~~~~~~~g~~~L~a~ivL~IMIiP~i~Sls~da~~~VP~~lreas~aLGaTkweti~kVilpaa~~GIv~a~iLglgRAi 234 (310)
T COG0573 155 GFNLGPFGISILTAGIVLAIMILPTIASLSRDALRAVPRSLREAAYALGATKWETIRKVILPAARSGIVGAVILGLGRAL 234 (310)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 01036455209999999999999999999999999587999999987388710043365398668779999999988987
Q ss_pred HHHHHHHHHCCCCCCC------CCCCHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999850556442------23783799999997----34979899999999999999999972157899987633
Q gi|255764497|r 519 NASIVSEVASWGHIHL------RTTGLGAYIAESTE----KGSFPEVVLGVLIMCCFVLALNRFLWHPLYLYGTRCLR 586 (587)
Q Consensus 519 ~~~~~ae~~~~~~~~~------~~~GlG~~i~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~r~~ 586 (587)
.|.....|+.+..... ..+.+...+.+... ...+...++..+++-++.+.+|.+- +|..||+|
T Consensus 235 GETmAV~mv~Gn~~~~~~slf~p~~Tits~ia~~~gea~~~~~~~aL~~~glvLfvitl~~n~~a-----~~i~~r~~ 307 (310)
T COG0573 235 GETMAVTMVIGNTARIPLSLFSPGTTLTSIIANEFGEASGGLHTSALFALGLVLFVITLLLNILA-----RYIVRRRR 307 (310)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
T ss_conf 28999999961755577543688654999999986312312689999999999999999999999-----99976663
No 98
>PRK09494 glnP glutamine ABC transporter permease protein; Reviewed
Probab=99.66 E-value=3.2e-13 Score=112.38 Aligned_cols=159 Identities=13% Similarity=0.063 Sum_probs=99.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 4068999999999999999999999999999997-150267899999999974328999999999984014554210479
Q gi|255764497|r 58 VHSLPQYASRTTLRMLSAMVISLLFTFVYATLAA-KSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVIGAEL 136 (587)
Q Consensus 58 ~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~-~~~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~~~~~~~ 136 (587)
.+.+++-+.+|+.+.+.+.++++++|+.+|..-. +++..++......++.+.+|.++.......-+.....+-......
T Consensus 12 ~p~ll~Gl~~Tl~l~~~s~~~g~~lG~~~a~~r~~~~~~l~~~~~~yv~~~RgtPlLv~lf~~yfglp~l~~~i~~~~~~ 91 (219)
T PRK09494 12 IPLLLEGAKMTLWISVLGLAGGLVIGLLAGFARAYGGWIANHIALVFIELIRGTPIVVQVMFIYFALPMAFNDLRIDPFS 91 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 99999999999999999999999999999999988968999999999999976489999999999899854677748999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999853599999999997299899999996288820123655526215789999999999998998999997354
Q gi|255764497|r 137 AAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVG 216 (587)
Q Consensus 137 ~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~~ 216 (587)
..++...++.-.++.-..+.|++++|++..|||+++|.|+||++++|.+|++....+....--+....++......+|..
T Consensus 92 ~~vi~l~l~~~Ay~aEi~R~gi~sVp~GQ~EAA~alG~s~~q~~r~IilPQa~r~~lP~l~n~~i~liK~Tsl~s~Igv~ 171 (219)
T PRK09494 92 AAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLALRRMLPPLGNQWIISIKDTSLFIVIGVA 171 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999831879999988598988898964699879998878899999999987999999899
No 99
>TIGR02138 phosphate_pstC phosphate ABC transporter, permease protein PstC; InterPro: IPR011864 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family describes PstC, which is homologous to PstA (IPR005672 from INTERPRO). In the Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016021 integral to membrane.
Probab=99.65 E-value=6.3e-14 Score=117.48 Aligned_cols=210 Identities=18% Similarity=0.179 Sum_probs=160.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
Q ss_conf 0000688999999999999999999731000011245436--67899985446677544469999999998315------
Q gi|255764497|r 372 TYQDVLYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFR--PHISSKIQPFAQLLAAFPANVFFPLVVSCVSY------ 443 (587)
Q Consensus 372 ~~~~~~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~------ 443 (587)
...+.-........|+....++.++|+-+++..++.+... |+.++.+.+..+.+-++|.+++..+....+..
T Consensus 62 p~~~~yG~l~~i~GTl~~~~~A~liA~P~~i~~Aif~~e~aP~~~~~~l~~~~ELLAgIPSVvYG~wG~~~l~P~l~~~~ 141 (317)
T TIGR02138 62 PVQEQYGALPLIVGTLITSLIAILIAVPVGIGIAIFLSEIAPKRVKSVLKPVVELLAGIPSVVYGFWGLFVLVPFLKDHF 141 (317)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 73024566999999999999999999999999999999852511356999999997223599999999999999999988
Q ss_pred ------C------------CCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf ------5------------665---0479999999999999999999999739989999999749887899899985745
Q gi|255764497|r 444 ------Y------------HLN---PNLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGI 502 (587)
Q Consensus 444 ------~------------~~~---~~~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~ 502 (587)
. ..+ ......++..+..+|.+.--+++.+++||++++|++-.+||++||+.|||++|.+
T Consensus 142 ~~~~~~~~~~iP~~~~~~~~~~~G~~~L~a~~vL~IMIlPt~as~s~D~~~~VP~~~kea~~ALGAT~wetI~~v~lP~a 221 (317)
T TIGR02138 142 QPFLGSNFGWIPLFGQLFSGPPNGYGLLTAGIVLAIMILPTIASISRDALRAVPRSYKEASLALGATKWETIRKVILPAA 221 (317)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 67865313532321223689983168999999999999999999999999735567888987706860433555332000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCC--CC-------CCCHHHHHHH----HHH--HCCHHHHHHHHHHHHHH
Q ss_conf 7789999999999999999999985055--644--22-------3783799999----997--34979899999999999
Q gi|255764497|r 503 FPYYVTGAITACGGAWNASIVSEVASWG--HIH--LR-------TTGLGAYIAE----STE--KGSFPEVVLGVLIMCCF 565 (587)
Q Consensus 503 ~P~i~~g~~~a~~~a~~~~~~ae~~~~~--~~~--~~-------~~GlG~~i~~----~~~--~~~~~~~~~~~~~~~~~ 565 (587)
+|+|++|..+++++|+-|.++.-|+.+. ..+ .. .+.+-..|.. +.+ ......+++.-+++-++
T Consensus 222 ~~GIv~a~~LglGRAlGETmAV~mv~Gn~p~~~~~~~~~~f~~~~~T~~~~Ia~~~g~a~~g~~~~~~aL~~~glvLfvi 301 (317)
T TIGR02138 222 RSGIVGAVVLGLGRALGETMAVAMVIGNAPSLNRPIPLNLFSPYGTTITSLIANEFGEASGGNSVHVSALFALGLVLFVI 301 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 21899999999999999999999997243234444120223356899999998506666888426899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999972157899987633
Q gi|255764497|r 566 VLALNRFLWHPLYLYGTRCLR 586 (587)
Q Consensus 566 ~~~~~~l~~~~l~~~~~~r~~ 586 (587)
.+++|.+- ++..||.|
T Consensus 302 tl~~n~~~-----~~i~~~~~ 317 (317)
T TIGR02138 302 TLLVNILA-----RYIVRRRK 317 (317)
T ss_pred HHHHHHHH-----HHHHHCCC
T ss_conf 99999999-----99853069
No 100
>PRK09494 glnP glutamine ABC transporter permease protein; Reviewed
Probab=99.64 E-value=1.5e-12 Score=107.42 Aligned_cols=204 Identities=11% Similarity=0.059 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCH
Q ss_conf 00688999999999999999999731000011245436-6789998544667754446999999999831----556650
Q gi|255764497|r 374 QDVLYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFR-PHISSKIQPFAQLLAAFPANVFFPLVVSCVS----YYHLNP 448 (587)
Q Consensus 374 ~~~~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~----~~~~~~ 448 (587)
.....++.....|+.....+..++..+|...+...... +..+.......+..+++|..+.+.....-++ ....+.
T Consensus 10 ~~~p~ll~Gl~~Tl~l~~~s~~~g~~lG~~~a~~r~~~~~~l~~~~~~yv~~~RgtPlLv~lf~~yfglp~l~~~i~~~~ 89 (219)
T PRK09494 10 PAIPLLLEGAKMTLWISVLGLAGGLVIGLLAGFARAYGGWIANHIALVFIELIRGTPIVVQVMFIYFALPMAFNDLRIDP 89 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 98999999999999999999999999999999999889689999999999999764899999999998998546777489
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 47999999999999999999999973998999999974988789989998574577899999999999999999999850
Q gi|255764497|r 449 NLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVAS 528 (587)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~ 528 (587)
....++...+..-.|.....++|+++||+...|||+++|.|++|++|+|++|++....+-.+..-+..-.|....+-.++
T Consensus 90 ~~~~vi~l~l~~~Ay~aEi~R~gi~sVp~GQ~EAA~alG~s~~q~~r~IilPQa~r~~lP~l~n~~i~liK~Tsl~s~Ig 169 (219)
T PRK09494 90 FSAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLALRRMLPPLGNQWIISIKDTSLFIVIG 169 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999998318799999885989888989646998799988788999999999879999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 55644223783799999997349798999999999999999999721578999876339
Q gi|255764497|r 529 WGHIHLRTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFLWHPLYLYGTRCLRL 587 (587)
Q Consensus 529 ~~~~~~~~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~r~~~ 587 (587)
-.+.. +-++.+ +.++++.-..+. ..+++...++.. ..++.++.|||.|+
T Consensus 170 v~El~----~~a~~i--~~~t~~~~e~~~---~~a~iY~~l~~~-l~~~~~~lErrl~i 218 (219)
T PRK09494 170 VAELT----RQGQEI--IAGNFRALEIWS---AVAVIYLIITLV-LSFILRRLERRMKI 218 (219)
T ss_pred HHHHH----HHHHHH--HHCCCCHHHHHH---HHHHHHHHHHHH-HHHHHHHHHHHHCC
T ss_conf 99999----999999--971071899999---999999999999-99999999987714
No 101
>PRK11123 arginine transporter permease subunit ArtQ; Provisional
Probab=99.63 E-value=2.6e-12 Score=105.79 Aligned_cols=206 Identities=16% Similarity=0.129 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------
Q ss_conf 068999999999999999999999999999997-15026789999999997432899999999998401-----------
Q gi|255764497|r 59 HSLPQYASRTTLRMLSAMVISLLFTFVYATLAA-KSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNL----------- 126 (587)
Q Consensus 59 ~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~-~~~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~----------- 126 (587)
..+.+-++.|+.+++.+.++++++|..+|+.-. +++..+........+.+.+|.++...... ||..
T Consensus 5 ~~Ll~G~~~Tl~l~~~a~~~g~~lG~~la~~r~s~~~~l~~~~~~yv~~~RgtP~lv~l~~~y--fg~p~l~~~l~~~~~ 82 (238)
T PRK11123 5 FPLASAAGMTVGLAVCALIVGLALAMFFAVWESAKWRPVAWPGTALVTLLRGLPEILVVLFIY--FGSSQLLLTLSDGFT 82 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHHHHHHHHHHHC
T ss_conf 999999999999999999999999999999998886889999999999991675999999999--952898876310000
Q ss_pred -------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf -------------4554210479999999998535999999999972998999999962888201236555262157899
Q gi|255764497|r 127 -------------YPGKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLV 193 (587)
Q Consensus 127 -------------~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~ 193 (587)
...-........+++..++.--++.-..+.|++++|+...|||+++|.|++|+++||.+|++.+..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~f~~avial~l~~~Ay~aEi~R~gi~sVp~GQ~EAa~alGms~~q~~r~IilPQa~r~~l 162 (238)
T PRK11123 83 LNLGFVQIPVQMDIENFEVSPFLCGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRHAL 162 (238)
T ss_pred CCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 01001110100121345646999999999999999999999999983999999999984989999999999899999997
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999899899999735444203678899999986311325699999999999999999999898754443212
Q gi|255764497|r 194 WNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQLLFRPMIVWSNKFRL 272 (587)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 272 (587)
-+..--+..-+.+...+..+|...-+ .....+ +.+..+.-........+-.+.........++++++.+|++.
T Consensus 163 P~l~n~~i~liK~TSL~s~Igv~El~----~~a~~i--~~~t~~~~e~y~~~a~iYlii~~~l~~~~~~lEkR~~r~~r 235 (238)
T PRK11123 163 PGLGNQWLVLLKDTALVSLISVNDLM----LQTKSI--ATRTQEPFTWYIIAAAIYLVITLISQYILKRIDLRFTRFER 235 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH--HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 38999999999984999999899999----999999--97134569999999999999999999999999998542257
No 102
>COG3833 MalG ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism]
Probab=99.63 E-value=6.9e-14 Score=117.23 Aligned_cols=197 Identities=14% Similarity=0.098 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCCHHHHHHHH
Q ss_conf 89999999999999999997310000112454366-7899985446677544469999-999998315566504799999
Q gi|255764497|r 378 YVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRP-HISSKIQPFAQLLAAFPANVFF-PLVVSCVSYYHLNPNLWLSLL 455 (587)
Q Consensus 378 ~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ip~~~~~-~~~~~~~~~~~~~~~~~~~~~ 455 (587)
..+.+..+|+..+.....+.+.+....|+...|.+ ..++........++.+|...-. .+..+.--.+..++.+..+.+
T Consensus 70 ~y~~W~~Nsliva~~t~~i~v~~~~~~aYafSR~rF~GRk~~L~~~Li~qMfP~~~aliAlY~l~~~lgllnt~~gLil~ 149 (282)
T COG3833 70 PYLLWLWNSLIVALITAAITVALVTLAAYAFSRYRFKGRKYLLKFFLILQMFPGVAALIALYVLLKLLGLLNTLWGLILA 149 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 78999999999999999999999999898899862655899999999999989999999999999996571167899999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCC
Q ss_conf 99999999999999999739989999999749887899899985745778999999999999999999998505-56442
Q gi|255764497|r 456 MIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASW-GHIHL 534 (587)
Q Consensus 456 ~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~-~~~~~ 534 (587)
+.-+..|+-..-...-+++||+|+||+|+.+||++||+|+||++|+++|-+..-.+.+|...|.+.+.+-++-. ++..+
T Consensus 150 Y~gG~ip~n~~l~Kgy~DTIP~sldEaA~iDGAt~~q~F~~IvLPLs~P~lavvaL~~FiGp~~dfiLa~~lL~~~~~~T 229 (282)
T COG3833 150 YLGGAIPMNTWLIKGYFDTIPKSLDEAAKIDGATRFQIFRRILLPLSKPILAVVALLAFIGPFGDFILASLLLRDPENYT 229 (282)
T ss_pred HHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 96473268899998445038956799986548506899999998600059999999998757799999999974815542
Q ss_pred CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 237837999999973497989999999999999999997215
Q gi|255764497|r 535 RTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFLWHP 576 (587)
Q Consensus 535 ~~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 576 (587)
..-|+=+++.+ ....++. .+++..++..+=+.+-.++.||
T Consensus 230 lavGL~~~~~~-~~~~~~~-~FAAgAvL~alPi~iLF~~lQk 269 (282)
T COG3833 230 LAVGLQSFLNG-PQNTNWG-LFAAGAVLIALPITILFLVLQK 269 (282)
T ss_pred HHHHHHHHHCC-CCHHHHH-HHHHHHHHHHCCHHHHHHHHHH
T ss_conf 59999999367-2102699-9999999986419999999999
No 103
>PRK11123 arginine transporter permease subunit ArtQ; Provisional
Probab=99.60 E-value=4.6e-12 Score=103.94 Aligned_cols=201 Identities=10% Similarity=0.053 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------
Q ss_conf 068899999999999999999973100001124543-66789998544667754446999999999831-----------
Q gi|255764497|r 375 DVLYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGF-RPHISSKIQPFAQLLAAFPANVFFPLVVSCVS----------- 442 (587)
Q Consensus 375 ~~~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~----------- 442 (587)
++..+......|+.....+.+++..+|..++..... .+..+.......+..+.+|..+...+..--.+
T Consensus 3 ~f~~Ll~G~~~Tl~l~~~a~~~g~~lG~~la~~r~s~~~~l~~~~~~yv~~~RgtP~lv~l~~~yfg~p~l~~~l~~~~~ 82 (238)
T PRK11123 3 EFFPLASAAGMTVGLAVCALIVGLALAMFFAVWESAKWRPVAWPGTALVTLLRGLPEILVVLFIYFGSSQLLLTLSDGFT 82 (238)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 47999999999999999999999999999999998886889999999999991675999999999952898876310000
Q ss_pred ---------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf ---------------55665047999999999999999999999973998999999974988789989998574577899
Q gi|255764497|r 443 ---------------YYHLNPNLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYV 507 (587)
Q Consensus 443 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~ 507 (587)
....+.....++...+..--|.....++|+++||+...|||+++|.+++|++|+|++|++....+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~f~~avial~l~~~Ay~aEi~R~gi~sVp~GQ~EAa~alGms~~q~~r~IilPQa~r~~l 162 (238)
T PRK11123 83 LNLGFVQIPVQMDIENFEVSPFLCGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRHAL 162 (238)
T ss_pred CCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 01001110100121345646999999999999999999999999983999999999984989999999999899999997
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999850556442237837999999973497989999999999999999997215789998763
Q gi|255764497|r 508 TGAITACGGAWNASIVSEVASWGHIHLRTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFLWHPLYLYGTRCL 585 (587)
Q Consensus 508 ~g~~~a~~~a~~~~~~ae~~~~~~~~~~~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~r~ 585 (587)
-++..-+..-+|....+-.++..+... -+..+ +.++++.-..+..+.++-++.-.. ..++.++.|||+
T Consensus 163 P~l~n~~i~liK~TSL~s~Igv~El~~----~a~~i--~~~t~~~~e~y~~~a~iYlii~~~----l~~~~~~lEkR~ 230 (238)
T PRK11123 163 PGLGNQWLVLLKDTALVSLISVNDLML----QTKSI--ATRTQEPFTWYIIAAAIYLVITLI----SQYILKRIDLRF 230 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH--HHHHCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_conf 389999999999849999998999999----99999--971345699999999999999999----999999999985
No 104
>PRK10999 malF maltose transporter membrane protein; Provisional
Probab=99.57 E-value=1.2e-12 Score=108.14 Aligned_cols=202 Identities=15% Similarity=0.034 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------
Q ss_conf 689999999999999999999999999999971502-6789999999997432899999999998401------------
Q gi|255764497|r 60 SLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRR-LGMVLVPILDIMQSIPILGFLTFTVVYFMNL------------ 126 (587)
Q Consensus 60 ~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~-~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~------------ 126 (587)
..++.+..|+.-++.++.+...+|..+|.++-..+. .++..+.++.++.++|.++-+..+.-+|-..
T Consensus 282 pf~~v~~WT~~fa~~sv~~~~~lGl~lAllln~~~~rgr~~~R~l~ilP~avP~~is~lvw~~mfn~~~G~iN~~L~~l~ 361 (520)
T PRK10999 282 PFIAIFVWTVVFSLLTVVFTVAVGMVLACLVQWEALKGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALF 361 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
T ss_conf 35666766789999999999999999999828756660768999999998999999999999842888657999999805
Q ss_pred -CCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -45542104----7999999999853599999999997299899999996288820123655526215789999999999
Q gi|255764497|r 127 -YPGKVIGA----ELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMS 201 (587)
Q Consensus 127 -~~~~~~~~----~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~ 201 (587)
...+.++. ..+++++-.=..+|++.+....++++||+|+.|||+..|||+||+||+|++|+.+|.+..-.++++.
T Consensus 362 g~~~~Wl~dp~~A~~~viiv~~W~g~p~~~i~~la~Lq~IP~~lyEAA~iDGA~~~~~f~~ITlPll~~~~~~lli~~~i 441 (520)
T PRK10999 362 GIKPAWFSDPTTARTMILIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFA 441 (520)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHEEEEECCCCHHHHHHHHHHHHH
T ss_conf 99986347969999999999999517299999999871599899999985296565045146720235889999999999
Q ss_pred HHHHHHHHHHHHHCCCCC-------H-HHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998998999997354442-------0-36788999999863----113256999999999999999999998
Q gi|255764497|r 202 GGWFFVVASEMIVVGDTV-------I-PLPGIGSYIALAIK----EQDLLAILYAMLTMLGVIFLYDQLLFR 261 (587)
Q Consensus 202 ~~~~~~~~~~~~g~~~~~-------~-~~~g~g~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~ 261 (587)
.+++.|...-++..|... . ...-+..++.+... ..|++.+.+...++.+++..+-...+|
T Consensus 442 ~~fn~F~~I~llT~GGP~~~~~~~pag~TdiLv~y~Y~~aF~~~~~~~~G~ASAis~iiFiiv~~~s~i~fr 513 (520)
T PRK10999 442 FNFNNFVLIQLLTNGGPDMIGTTTPAGYTDLLVSYTYRIAFEGGGGQDFGLAAAIATLIFLLVGALALLNLK 513 (520)
T ss_pred HHHHCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 996252577643489988777888885076799999999982477645509999999999999999999999
No 105
>PRK11122 artM arginine transporter permease subunit ArtM; Provisional
Probab=99.57 E-value=1.9e-11 Score=99.58 Aligned_cols=204 Identities=14% Similarity=0.155 Sum_probs=143.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------C-
Q ss_conf 4068999999999999999999999999999997-150267899999999974328999999999984014-------5-
Q gi|255764497|r 58 VHSLPQYASRTTLRMLSAMVISLLFTFVYATLAA-KSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLY-------P- 128 (587)
Q Consensus 58 ~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~-~~~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~-------~- 128 (587)
.+.+.+-++.|+.+++.+.++++++|+.+|.... +++..++......++.+.+|.++.... ..||.+. +
T Consensus 5 ~P~ll~G~~~Tl~l~~~s~~~~~~lG~~la~~r~~~~~~l~~~~~~yv~~~Rg~PlLv~lf~--~yfg~~~~~~l~~~~~ 82 (222)
T PRK11122 5 LPELLKGLHTSLTLTVASLLVALVLALIFTIILTLKTPVLVWLVRGYITLFTGTPLLVQIFL--IYYGPGQFPWLQEYPW 82 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHH--HHHHHHHHHHHHCCCH
T ss_conf 99999999999999999999999999999999987977899999999999956469999999--9981488877750303
Q ss_pred --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --542104799999999985359999999999729989999999628882012365552621578999999999999899
Q gi|255764497|r 129 --GKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFF 206 (587)
Q Consensus 129 --~~~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~ 206 (587)
.-....+...+++...+.-.++.-..+.|++++|++..|||+++|.|+||++| |.+|++....+.+..--+..-++|
T Consensus 83 ~~~~~~~~~~~~viaL~l~~~Ay~aEi~R~gi~sV~~GQ~EAA~slGls~~q~~r-IilPQa~r~~lP~l~n~~i~liK~ 161 (222)
T PRK11122 83 LWHLLSQPWLCAMLALALNSAAYSTQLFYGAIRAIPEGQWQSCSALGMSKKQTLA-ILLPYAFKRALSSYSNEVVLVFKG 161 (222)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5320225999999999999999999999999960998799999986989999999-899999999866889999999998
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999973544420367889999998631132569999999999999999999989875444321
Q gi|255764497|r 207 VVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQLLFRPMIVWSNKFR 271 (587)
Q Consensus 207 ~~~~~~~g~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 271 (587)
......+|...-+ .....+. .++.+.. ......++-.+.........++.+++..|++
T Consensus 162 TsL~s~Igv~El~----~~a~~i~--~~t~~~~-~y~~~a~~Y~~i~~~~~~~~~~lErR~~~~~ 219 (222)
T PRK11122 162 TSLAYTITLMDVM----GYSQLLY--GRTYDVM-VFGAAGIIYLVVNGLLTLLMRLIERKALAFE 219 (222)
T ss_pred HHHHHHHHHHHHH----HHHHHHH--HCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4999999899999----9999999--7416099-9999999999999999999999999876553
No 106
>COG0765 HisM ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=99.57 E-value=5.9e-12 Score=103.20 Aligned_cols=159 Identities=18% Similarity=0.182 Sum_probs=106.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCHH
Q ss_conf 74068999999999999999999999999999997-150267899999999974328999999999984-0145542104
Q gi|255764497|r 57 DVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAA-KSRRLGMVLVPILDIMQSIPILGFLTFTVVYFM-NLYPGKVIGA 134 (587)
Q Consensus 57 ~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~-~~~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~-~~~~~~~~~~ 134 (587)
....+++-+..|+.+.+.+..+++++|+.+|..-. +++..+.......++.+..|-++..... .|| ....+-....
T Consensus 14 ~~~~ll~G~~~Tl~ls~~~~~~g~vlG~~la~~r~s~~~~l~~~~~~Yv~~~RgtPlLvqlf~~--yfg~lp~~gi~~~~ 91 (222)
T COG0765 14 YLPFLLKGLLVTLLLTLLSIVLGLVLGLLLALMRLSGNKPLRWLARAYVEIFRGTPLLVQLFFI--YFGLLPLLGIELDP 91 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHH--HHHHHHHHCCCCCH
T ss_conf 5899999999999999999999999999999999778478999999988776174199999999--99857984467779
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999999998535999999999972998999999962888201236555262157899999999999989989999973
Q gi|255764497|r 135 ELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIV 214 (587)
Q Consensus 135 ~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g 214 (587)
..+.+.+..++.--++.=.++.|++++|+...|||+++|.+++|++++|.+|++..-++....--+..-+.+......+|
T Consensus 92 ~~aavial~l~~~AY~aEi~R~GI~sV~kGQ~EAA~aLGls~~q~~r~IIlPQAlr~~lP~l~n~~i~liK~TSl~svIg 171 (222)
T COG0765 92 FTAAVIALSLNSGAYLAEIVRAGIQSVPKGQWEAARALGLTYWQTMRYVILPQALRVILPPLGNQFISLIKDTSLVSVIG 171 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999961888689999985999866866300235699865176899999999829999998
Q ss_pred CCC
Q ss_conf 544
Q gi|255764497|r 215 VGD 217 (587)
Q Consensus 215 ~~~ 217 (587)
...
T Consensus 172 v~E 174 (222)
T COG0765 172 VVE 174 (222)
T ss_pred HHH
T ss_conf 999
No 107
>PRK09471 oppB oligopeptide transporter permease; Reviewed
Probab=99.56 E-value=1.1e-11 Score=101.32 Aligned_cols=187 Identities=12% Similarity=0.082 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--------C
Q ss_conf 9999999999999999999999999999715--02678999999999743289999999999840145542--------1
Q gi|255764497|r 63 QYASRTTLRMLSAMVISLLFTFVYATLAAKS--RRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKV--------I 132 (587)
Q Consensus 63 ~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~--~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~~--------~ 132 (587)
+.+.+|+.+++.+.+++.++|+++|.+++++ ++.++.+..+..+..++|++..+...+..|......-. .
T Consensus 92 ~~lp~Tl~L~~~a~~i~~~lgi~lGi~aa~~~~~~~D~~~~~~~~~~~siP~F~la~lli~iF~~~l~~~P~~g~~~~~~ 171 (306)
T PRK09471 92 SSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVIPSFVVAPLLVMIFAIILHWLPGGGWNGGAL 171 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
T ss_conf 88899999999999999999999999999834751619999999999998999999999889997217637788875207
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0479999999998535999999999-972998999999962888201236555262157899999999999989989999
Q gi|255764497|r 133 GAELAAIFAIFTSQVWNMTFSMYQS-LCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASE 211 (587)
Q Consensus 133 ~~~~~~i~~~~~~~~~~i~~~~~~~-l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~ 211 (587)
....--+.++.........+.++++ ++..++++.+.||..|.++++.++|..++.+++.+++...+.++.-++...+.|
T Consensus 172 ~~liLP~~~l~l~~~~~~~r~~R~~~~~~l~~dyV~~ArakGl~~~~i~~rh~lrnal~P~it~~~~~~~~ll~GsvivE 251 (306)
T PRK09471 172 KFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYMGPAFVGIITGSMVIE 251 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 88753699999999999999999999999877999999986998400730012984299999999999999845871210
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 97354442036788999999863113256999999999999999
Q gi|255764497|r 212 MIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLY 255 (587)
Q Consensus 212 ~~g~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 255 (587)
.+ +..+|+|....++.++.|+.......+.+..+.+..
T Consensus 252 ~i------F~~PGiG~l~~~Ai~~~D~p~v~g~~l~~a~~~i~~ 289 (306)
T PRK09471 252 TI------FGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILF 289 (306)
T ss_pred HH------HCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 98------647675999999998049899999999999999999
No 108
>COG4132 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=99.56 E-value=2.5e-11 Score=98.64 Aligned_cols=179 Identities=11% Similarity=0.083 Sum_probs=137.9
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--
Q ss_conf 366870740689999999999999999999999999999971502678999999999743289999999999840145--
Q gi|255764497|r 51 IVPITLDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYP-- 128 (587)
Q Consensus 51 ~~~~~~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~-- 128 (587)
+.....+ +.+.+..++|+...+.+.+++++||+..++..-+-..+.|.-...+..-.+...++-.|++-.+....+.
T Consensus 45 Ni~~lf~-p~~l~a~~~Sikis~aSsl~G~lig~~~a~alv~~~~ps~ir~~lltfsgvaSnFaGVPLAfAFiatLG~~G 123 (282)
T COG4132 45 NIADLFQ-PFILQAYWISIKISFASSLLGLLIGFLLAWALVLGGLPSWIRSFLLTFSGVASNFAGVPLAFAFIATLGRNG 123 (282)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCH
T ss_conf 7999862-899999999986799998899999999999999779478888778423145541368719999999965441
Q ss_pred -----------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf -----------------542104799999999985359999999999729989999999628882012365552621578
Q gi|255764497|r 129 -----------------GKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPG 191 (587)
Q Consensus 129 -----------------~~~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~ 191 (587)
.-.+++..+..+.-.+...|.+++....++++..+|..||++.+|++.||.+++|.+|..-|+
T Consensus 124 ~vtv~Lk~~~g~~~~~~~fnl~s~~GltitY~yFQIPL~vlil~PA~dgLk~ewreaa~~LGa~~~qYWrmva~PiL~Ps 203 (282)
T COG4132 124 LVTVFLKTLGGFNLYSTGFNLLSFFGLTITYVYFQIPLMVLILTPAFDGLKKEWREAAAILGATGWQYWRMVALPILWPS 203 (282)
T ss_pred HHHHHHHHHCCCCEECCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 69999998427430046504888625257757886568999897666667899999999867742899999989985199
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 999999999999899899999735444203678899999
Q gi|255764497|r 192 LVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIA 230 (587)
Q Consensus 192 i~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~ 230 (587)
+.....+-|..+++...++-.+.+++-...---++.++.
T Consensus 204 llGt~vlLfANAfGA~ATayaLtgsslNivPI~l~AqIr 242 (282)
T COG4132 204 LLGTFVLLFANAFGAYATAYALTGSSLNIVPILLYAQIR 242 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 988899999987757787877506875416899999982
No 109
>PRK11122 artM arginine transporter permease subunit ArtM; Provisional
Probab=99.56 E-value=1.8e-11 Score=99.68 Aligned_cols=154 Identities=12% Similarity=0.079 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------H
Q ss_conf 06889999999999999999997310000112454-3667899985446677544469999999998------------3
Q gi|255764497|r 375 DVLYVIWLGCITMFRVVVLIIIASIIWIPVGIWIG-FRPHISSKIQPFAQLLAAFPANVFFPLVVSC------------V 441 (587)
Q Consensus 375 ~~~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~------------~ 441 (587)
....+......|+.....+..++..+|...+.... +++..+....-..+..+++|..+.+.....- .
T Consensus 4 ~~P~ll~G~~~Tl~l~~~s~~~~~~lG~~la~~r~~~~~~l~~~~~~yv~~~Rg~PlLv~lf~~yfg~~~~~~l~~~~~~ 83 (222)
T PRK11122 4 YLPELLKGLHTSLTLTVASLLVALVLALIFTIILTLKTPVLVWLVRGYITLFTGTPLLVQIFLIYYGPGQFPWLQEYPWL 83 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 69999999999999999999999999999999998797789999999999995646999999999814888777503035
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 15566504799999999999999999999997399899999997498878998999857457789999999999999999
Q gi|255764497|r 442 SYYHLNPNLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNAS 521 (587)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~ 521 (587)
.....++....++...+..-.|.....++|+++||++..|||+++|.|+||++| |++|++....+-++..-+..-+|+.
T Consensus 84 ~~~~~~~~~~~viaL~l~~~Ay~aEi~R~gi~sV~~GQ~EAA~slGls~~q~~r-IilPQa~r~~lP~l~n~~i~liK~T 162 (222)
T PRK11122 84 WHLLSQPWLCAMLALALNSAAYSTQLFYGAIRAIPEGQWQSCSALGMSKKQTLA-ILLPYAFKRALSSYSNEVVLVFKGT 162 (222)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 320225999999999999999999999999960998799999986989999999-8999999998668899999999984
Q ss_pred HHHHHHCC
Q ss_conf 99998505
Q gi|255764497|r 522 IVSEVASW 529 (587)
Q Consensus 522 ~~ae~~~~ 529 (587)
..+-.++.
T Consensus 163 sL~s~Igv 170 (222)
T PRK11122 163 SLAYTITL 170 (222)
T ss_pred HHHHHHHH
T ss_conf 99999989
No 110
>COG0765 HisM ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=99.55 E-value=1.7e-11 Score=99.78 Aligned_cols=197 Identities=15% Similarity=0.111 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCCCCCCHH
Q ss_conf 0688999999999999999999731000011245436-67899985446677544469999999998----315566504
Q gi|255764497|r 375 DVLYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFR-PHISSKIQPFAQLLAAFPANVFFPLVVSC----VSYYHLNPN 449 (587)
Q Consensus 375 ~~~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ip~~~~~~~~~~~----~~~~~~~~~ 449 (587)
....++.....|+.....+..++..+|..++...... +..+.......+..+..|..+.+...... ++ ...+..
T Consensus 14 ~~~~ll~G~~~Tl~ls~~~~~~g~vlG~~la~~r~s~~~~l~~~~~~Yv~~~RgtPlLvqlf~~yfg~lp~~g-i~~~~~ 92 (222)
T COG0765 14 YLPFLLKGLLVTLLLTLLSIVLGLVLGLLLALMRLSGNKPLRWLARAYVEIFRGTPLLVQLFFIYFGLLPLLG-IELDPF 92 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC-CCCCHH
T ss_conf 5899999999999999999999999999999999778478999999988776174199999999998579844-677799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 79999999999999999999999739989999999749887899899985745778999999999999999999998505
Q gi|255764497|r 450 LWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASW 529 (587)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~ 529 (587)
.+.++...+..--|....+++|+++||+...|||+++|.+++|++|+|++|++..-++-.+..-+..-+|+...+-.++.
T Consensus 93 ~aavial~l~~~AY~aEi~R~GI~sV~kGQ~EAA~aLGls~~q~~r~IIlPQAlr~~lP~l~n~~i~liK~TSl~svIgv 172 (222)
T COG0765 93 TAAVIALSLNSGAYLAEIVRAGIQSVPKGQWEAARALGLTYWQTMRYVILPQALRVILPPLGNQFISLIKDTSLVSVIGV 172 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999618886899999859998668663002356998651768999999998299999989
Q ss_pred CCCCCCCCCHHHHHHHHH----HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 564422378379999999----734979899999999999999999972157899987633
Q gi|255764497|r 530 GHIHLRTTGLGAYIAEST----EKGSFPEVVLGVLIMCCFVLALNRFLWHPLYLYGTRCLR 586 (587)
Q Consensus 530 ~~~~~~~~GlG~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~r~~ 586 (587)
. -....++ +++++-..+... +++...++ ....++.++.|||++
T Consensus 173 ~----------EL~~~a~~i~~~t~~~~e~~~~~---a~iY~~l~-~~ls~~~~~lErr~~ 219 (222)
T COG0765 173 V----------ELTRAAQIIAARTFRPFEVYLLA---ALIYLILC-LPLSLLSRRLERRLA 219 (222)
T ss_pred H----------HHHHHHHHHHHHHCCHHHHHHHH---HHHHHHHH-HHHHHHHHHHHHHHC
T ss_conf 9----------99999999998665179999999---99999999-999999999998852
No 111
>COG3639 ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.54 E-value=9.4e-12 Score=101.71 Aligned_cols=195 Identities=14% Similarity=0.107 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 0688999999999999999999731000011245436----678999854466775444699999999983155665047
Q gi|255764497|r 375 DVLYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFR----PHISSKIQPFAQLLAAFPANVFFPLVVSCVSYYHLNPNL 450 (587)
Q Consensus 375 ~~~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~ 450 (587)
.....+..++.|+..+..++.++..+++|++....++ ++.........+.++++|.+++..+....+|.+..
T Consensus 83 ~~~~~~~~ll~Tl~ma~~gT~l~~i~aipl~flaa~n~~~~~~~~~~~r~ll~~iR~iP~iv~a~ifv~~~g~G~~---- 158 (283)
T COG3639 83 QLPDILTALLQTLAIAFAGTLLAAILAIPLAFLAARNLSPKRWISFPVRRLLDFIRTIPELVWALLFVAAFGLGPF---- 158 (283)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH----
T ss_conf 0315799999999999999999999999999997312586412899999999999764299999999998578547----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999999999999997399899999997498878998999857457789999999999999999999985055
Q gi|255764497|r 451 WLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWG 530 (587)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~ 530 (587)
+.+.++.+.+.-....-..+.++++|++..|+.+..|+|+.|..+.=++|..+|.+++-.++.+-...+..++-.++|.|
T Consensus 159 agilAl~i~t~g~LgKl~~e~iE~id~~p~e~l~a~Gas~~~~~~~~vlPqv~p~f~s~~lyrfE~n~R~a~VlG~vGaG 238 (283)
T COG3639 159 AGVLALGIYTIGILGKLYAEALESIDTGPGEALRATGASRLQLILFGVLPQIKPNFISYSLYRFESNIRAAAVLGLVGAG 238 (283)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 78999999802199999999998457767899998368614533112001241889999999999875788998732554
Q ss_pred CCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6442237837999999973497989999999999999999997215789998763
Q gi|255764497|r 531 HIHLRTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFLWHPLYLYGTRCL 585 (587)
Q Consensus 531 ~~~~~~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~r~ 585 (587)
|||..+.++.+..|++.+.+.++.+.+.++++|.+- .+.+||.
T Consensus 239 -------GIG~~L~~~~~~~~~d~v~~i~l~i~v~V~~id~iS-----~~iR~r~ 281 (283)
T COG3639 239 -------GIGQRLMNSISLFQWDKVATIILPILVLVILIDLIS-----AKIRKRL 281 (283)
T ss_pred -------HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH
T ss_conf -------277999988744047576999999999999999999-----9999985
No 112
>COG1173 DppC ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.53 E-value=6.5e-11 Score=95.65 Aligned_cols=165 Identities=21% Similarity=0.177 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 8999999999999999999999999999997150-267899999999974328999999999984014554210479999
Q gi|255764497|r 61 LPQYASRTTLRMLSAMVISLLFTFVYATLAAKSR-RLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVIGAELAAI 139 (587)
Q Consensus 61 l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~-~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~~~~~~~~~i 139 (587)
+..-.-+|+..++.++.+++++|..+|..+++.. +.++.+..+.++..++|.+..+......+|.+ ....+
T Consensus 81 li~G~r~SL~I~~~~~~~~~~iG~~lG~iaGy~gG~vD~ilmri~di~ls~P~lll~i~l~~~lg~~--------~~~ii 152 (289)
T COG1173 81 LLYGARISLLIGLLAVLISLVIGTLLGLLAGYFGGWVDRVLMRITDIFLAFPSLLLAILLVAILGPG--------LLNLI 152 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC--------HHHHH
T ss_conf 9999999999999999999999999999998807619999999999999765999999999997724--------89899
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999998535999999999-9729989999999628882012365552621578999999999999899899999735444
Q gi|255764497|r 140 FAIFTSQVWNMTFSMYQS-LCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDT 218 (587)
Q Consensus 140 ~~~~~~~~~~i~~~~~~~-l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~~~~ 218 (587)
+++....-|...+.++.. ++.-++|+.||||.+|+|+++.++|..+|.+.|.++....+.+..+.-....-..+|.|..
T Consensus 153 ial~i~~W~~~AR~vR~~vl~~k~~eyV~AAr~~G~~~~~Ii~rhIlPn~~~~iiv~~~l~~~~aIl~ea~LSFLGLG~~ 232 (289)
T COG1173 153 LALALVGWPGYARIVRGQVLSLREREYVEAARALGASTLRIIFRHILPNVLPPLIVLATLDIGGAILAEAGLSFLGLGVQ 232 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999943999999999999987768999999849992012498862302899999999999999999999999068899
Q ss_pred CHHHHHHHHHHHHHHH
Q ss_conf 2036788999999863
Q gi|255764497|r 219 VIPLPGIGSYIALAIK 234 (587)
Q Consensus 219 ~~~~~g~g~~~~~~~~ 234 (587)
...+..|..+.++.+
T Consensus 233 -pp~pswG~ml~~~~~ 247 (289)
T COG1173 233 -PPTPSWGTMLAEGRN 247 (289)
T ss_pred -CCCCCHHHHHHHHHH
T ss_conf -899989999999999
No 113
>PRK10913 dipeptide transporter; Provisional
Probab=99.53 E-value=1.3e-10 Score=93.41 Aligned_cols=169 Identities=17% Similarity=0.170 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 68999999999999999999999999999997150-26789999999997432899999999998401455421047999
Q gi|255764497|r 60 SLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSR-RLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVIGAELAA 138 (587)
Q Consensus 60 ~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~-~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~~~~~~~~~ 138 (587)
++..-..+|+..++.++++++++|..+|..+++.+ +.++.+..+.++..++|.+..+......++.+ ....
T Consensus 93 rll~G~r~Sl~ial~~~~i~~~iG~~iG~iaGy~gG~vD~~i~r~~di~~aiP~lll~l~l~~~~g~~--------~~~~ 164 (300)
T PRK10913 93 RLMYGARLSLLVGCLVVVLSLVMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPS--------IGNA 164 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC--------HHHH
T ss_conf 99999999999999999999999999999998038840788877766660688487768755304874--------6899
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999998535999999999-972998999999962888201236555262157899999999999989989999973544
Q gi|255764497|r 139 IFAIFTSQVWNMTFSMYQS-LCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGD 217 (587)
Q Consensus 139 i~~~~~~~~~~i~~~~~~~-l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~~~ 217 (587)
++++.....|...+.++.. ++.-++|+.||||.+|+|+|+.++|..+|...|.++....+.+..+......-..+|.|.
T Consensus 165 ~lal~~~~w~~~aR~vR~~vl~~~~~~yV~AAr~~G~s~~rIi~~hIlPnv~~~iiv~~~l~~~~aIl~ea~LsFLGlG~ 244 (300)
T PRK10913 165 ALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGA 244 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999998999999999999998615899999984999747864334266588999999999999999999999924789
Q ss_pred CCHHHHHHHHHHHHHHHHCC
Q ss_conf 42036788999999863113
Q gi|255764497|r 218 TVIPLPGIGSYIALAIKEQD 237 (587)
Q Consensus 218 ~~~~~~g~g~~~~~~~~~~~ 237 (587)
+. ..+.-|..+.++.+..+
T Consensus 245 ~p-p~~sWG~ml~~~~~~~~ 263 (300)
T PRK10913 245 QP-PTPEWGTMLSDVLQFAQ 263 (300)
T ss_pred CC-CCCCHHHHHHHHHHHHH
T ss_conf 99-98839999999999998
No 114
>PRK09881 ATP-dependent peptide transporter membrane subunit; Provisional
Probab=99.52 E-value=1.2e-10 Score=93.61 Aligned_cols=169 Identities=16% Similarity=0.140 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 6899999999999999999999999999999715-026789999999997432899999999998401455421047999
Q gi|255764497|r 60 SLPQYASRTTLRMLSAMVISLLFTFVYATLAAKS-RRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVIGAELAA 138 (587)
Q Consensus 60 ~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~-~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~~~~~~~~~ 138 (587)
++..-..+|+..++.+++++.++|..+|..+++. .+.++.+..+.++..++|.+..+......++.+ ....
T Consensus 88 rll~G~r~sL~i~l~~~~i~~~iG~~lG~~aGy~gG~~D~il~ri~Dv~~aiP~lll~i~l~~~~g~~--------~~~~ 159 (296)
T PRK09881 88 RVLVGSQQSILAGLVVVAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPS--------LFNA 159 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC--------HHHH
T ss_conf 98887999999999999999999999999888817607665567776301586057778887651675--------1688
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999998535999999999-972998999999962888201236555262157899999999999989989999973544
Q gi|255764497|r 139 IFAIFTSQVWNMTFSMYQS-LCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGD 217 (587)
Q Consensus 139 i~~~~~~~~~~i~~~~~~~-l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~~~ 217 (587)
++++.....|...+.++.. ++--++|+.||||.+|+|+++.++|..+|...|.++....+.+..+......-..+|.|.
T Consensus 160 il~i~l~~w~~~aR~vR~~~l~i~~~~yV~AAr~~G~s~~~Ii~rhiLPni~~~liv~~~~~~~~aIl~ea~LsFLGlG~ 239 (296)
T PRK09881 160 MLAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLINWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGA 239 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 89999987999999999999999634999999983988678541427666188999999999999999999999903789
Q ss_pred CCHHHHHHHHHHHHHHHHCC
Q ss_conf 42036788999999863113
Q gi|255764497|r 218 TVIPLPGIGSYIALAIKEQD 237 (587)
Q Consensus 218 ~~~~~~g~g~~~~~~~~~~~ 237 (587)
+.. .+.-|..+.++.+...
T Consensus 240 ~pp-~~sWG~mi~~~~~~~~ 258 (296)
T PRK09881 240 QQP-SAEWGAMVANGRNYVL 258 (296)
T ss_pred CCC-CCCHHHHHHHHHHHHH
T ss_conf 999-9859999999999998
No 115
>PRK10352 nickel transporter permease NikB; Provisional
Probab=99.52 E-value=1.2e-11 Score=100.94 Aligned_cols=190 Identities=18% Similarity=0.051 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCC---C
Q ss_conf 899999999999999999999999999999715--02678999999999743289999999999840145---542---1
Q gi|255764497|r 61 LPQYASRTTLRMLSAMVISLLFTFVYATLAAKS--RRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYP---GKV---I 132 (587)
Q Consensus 61 l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~--~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~---~~~---~ 132 (587)
..+.+.+|+.+++.+.+++.++|+|+|.+++.+ ++.++.+..+..+..++|++..+...+..|..... ... .
T Consensus 94 I~~~lp~Tl~L~~~a~~l~~~igi~lGi~aa~~~~~~~D~~~~~~~~~~~siP~F~la~lli~~fa~~l~~~P~~g~~~~ 173 (314)
T PRK10352 94 MLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYLQWLPAMGYGGW 173 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
T ss_conf 88763788999999999999998599999872079721013105899878731999999999999996476787677833
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0479999999998535999999999-972998999999962888201236555262157899999999999989989999
Q gi|255764497|r 133 GAELAAIFAIFTSQVWNMTFSMYQS-LCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASE 211 (587)
Q Consensus 133 ~~~~~~i~~~~~~~~~~i~~~~~~~-l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~ 211 (587)
....--..++.........+.++++ ++..++++.+.||..|.++++.++|..++.+++.+++...+.+..-++...+.|
T Consensus 174 ~~liLP~l~l~l~~~a~~~r~~R~~~~e~l~~dyv~~ArakGls~~~i~~rh~lrnal~P~it~~~~~~~~ll~GavivE 253 (314)
T PRK10352 174 QHIILPAVSIAFMSLAINARLLRASMLDVAGQRHVTWARLRGLSDRQVERRHILRNASLPMITAVGMHIGELIGGTMIIE 253 (314)
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEE
T ss_conf 65411199999999999999999999998632999999986989313608652874298899999999999847761001
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 973544420367889999998631132569999999999999999
Q gi|255764497|r 212 MIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLYD 256 (587)
Q Consensus 212 ~~g~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 256 (587)
.+ +..+|+|....++..+.|+.......+...++.++.+
T Consensus 254 ~i------F~~pGlG~ll~~Ai~~rD~p~v~g~~l~~~~~~v~~n 292 (314)
T PRK10352 254 NI------FAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCN 292 (314)
T ss_pred HH------HCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 87------5476759999999981388999999999999999999
No 116
>COG1173 DppC ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.51 E-value=7.4e-11 Score=95.24 Aligned_cols=206 Identities=20% Similarity=0.171 Sum_probs=165.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 06889999999999999999997310000112454366-78999854466775444699999999983155665047999
Q gi|255764497|r 375 DVLYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRP-HISSKIQPFAQLLAAFPANVFFPLVVSCVSYYHLNPNLWLS 453 (587)
Q Consensus 375 ~~~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~ 453 (587)
.+..++.....|+.-.+.+..++..+|..+|...++++ +.++.+....+.+.++|...+.......++.+ ....+
T Consensus 77 i~srli~G~r~SL~I~~~~~~~~~~iG~~lG~iaGy~gG~vD~ilmri~di~ls~P~lll~i~l~~~lg~~----~~~ii 152 (289)
T COG1173 77 ILSRLLYGARISLLIGLLAVLISLVIGTLLGLLAGYFGGWVDRVLMRITDIFLAFPSLLLAILLVAILGPG----LLNLI 152 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC----HHHHH
T ss_conf 99999999999999999999999999999999998807619999999999999765999999999997724----89899
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999999999999-9739989999999749887899899985745778999999999999999999998505564
Q gi|255764497|r 454 LLMIFGTQWYILFNVIAG-ASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGHI 532 (587)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g-l~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~~~ 532 (587)
+++.+..-|...|.+++- ++.-++|+.||||.+|+++++.++|-.+|.+.|.++....+.++.+......-.|+|-|..
T Consensus 153 ial~i~~W~~~AR~vR~~vl~~k~~eyV~AAr~~G~~~~~Ii~rhIlPn~~~~iiv~~~l~~~~aIl~ea~LSFLGLG~~ 232 (289)
T COG1173 153 LALALVGWPGYARIVRGQVLSLREREYVEAARALGASTLRIIFRHILPNVLPPLIVLATLDIGGAILAEAGLSFLGLGVQ 232 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999943999999999999987768999999849992012498862302899999999999999999999999068899
Q ss_pred CCCCCCHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 4223783799999997---34979899999999999999999972157899987633
Q gi|255764497|r 533 HLRTTGLGAYIAESTE---KGSFPEVVLGVLIMCCFVLALNRFLWHPLYLYGTRCLR 586 (587)
Q Consensus 533 ~~~~~GlG~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~r~~ 586 (587)
. .....|.++.++++ .+++-.+..-.+.+.++++.+|.+ -+-|.+....|.|
T Consensus 233 p-p~pswG~ml~~~~~~~~~~~~w~~l~Pgl~i~l~vl~fnll-gdgLrd~~dpr~~ 287 (289)
T COG1173 233 P-PTPSWGTMLAEGRNYLLTGAWWLVLFPGLAILLTVLAFNLL-GDGLRDALDPRLR 287 (289)
T ss_pred C-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCHHHC
T ss_conf 8-99989999999999887048599999899999999999999-9889987480102
No 117
>PRK10914 dipeptide transporter permease DppB; Provisional
Probab=99.50 E-value=4.1e-11 Score=97.05 Aligned_cols=186 Identities=16% Similarity=0.104 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC---------
Q ss_conf 9999999999999999999999999997150--26789999999997432899999999998401455421---------
Q gi|255764497|r 64 YASRTTLRMLSAMVISLLFTFVYATLAAKSR--RLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVI--------- 132 (587)
Q Consensus 64 ~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~--~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~~~--------- 132 (587)
.+.+|+.++..+.+++.++|+++|.+++..+ +.++.+..+..+..++|++..+...+..|+.....-..
T Consensus 95 ~lp~Tl~L~~~a~il~~~igi~lGi~aa~~~~~~~D~~~~~~~~~~~siP~F~lallli~if~~~l~~~P~~G~~~~~~~ 174 (339)
T PRK10914 95 RFKATLELGVCAMIFATAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRVSDMVF 174 (339)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 27258999999999999999999999998527511136788898612306999999999999999574777676765312
Q ss_pred ----------------------------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHCCCCCHHHHHHH
Q ss_conf ----------------------------0479999999998535999999999-97299899999996288820123655
Q gi|255764497|r 133 ----------------------------GAELAAIFAIFTSQVWNMTFSMYQS-LCNIPRDLEEVSRSFRLSGWQKFWYL 183 (587)
Q Consensus 133 ----------------------------~~~~~~i~~~~~~~~~~i~~~~~~~-l~~i~~~l~eaa~~~Ga~~~~~f~~v 183 (587)
....--..++.........+.++++ ++..++++.+.||..|.++.+.++|.
T Consensus 175 ~~~~~p~~g~~~~~~~~~g~~~~~~~~l~hliLP~l~L~l~~~a~~~r~~R~~~~~~l~~dyV~~ArakGl~~~~i~~~h 254 (339)
T PRK10914 175 LDDSNPLTGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIVH 254 (339)
T ss_pred CCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEHHH
T ss_conf 46666655410011142045113788999999999999999999999999999999983499999998594933140498
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 526215789999999999998998999997354442036788999999863113256999999999999999
Q gi|255764497|r 184 GVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLY 255 (587)
Q Consensus 184 ~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 255 (587)
.++.+++.+++...+.+..-++...+.|.+= ..+|+|....++..+.|+.......+.+.++.++.
T Consensus 255 ~lrnal~P~it~~g~~~~~ll~GsvivE~vF------~~pGiG~l~~~Ai~~rD~pvi~g~~l~~~~~~i~~ 320 (339)
T PRK10914 255 ALRNAMLPVVTVIGLQVGTLLAGAILTETIF------SWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILV 320 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 3986099899999999999997699986986------77576999999998358899999999999999999
No 118
>PRK10417 nikC nickel transporter permease NikC; Provisional
Probab=99.50 E-value=2.1e-10 Score=91.98 Aligned_cols=170 Identities=15% Similarity=0.051 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 6899999999999999999999999999999715-026789999999997432899999999998401455421047999
Q gi|255764497|r 60 SLPQYASRTTLRMLSAMVISLLFTFVYATLAAKS-RRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVIGAELAA 138 (587)
Q Consensus 60 ~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~-~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~~~~~~~~~ 138 (587)
++..-..+|+..++.++.++..+|..+|..++.. .+.++.+..+.++..++|.+..+......++.+ ....
T Consensus 61 rll~G~r~sl~i~l~~~~~~~~iG~~lG~~ag~~gg~~d~~~~~~~d~~~~iP~lll~i~l~~~~g~~--------~~~~ 132 (272)
T PRK10417 61 RLMAGTRVSLGSVMACLLLVLALGLVIGGSAGLLGGRVDQATMRVADMFMTFPTSILSFFMVGVLGTG--------LTNV 132 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCC--------CHHH
T ss_conf 99999999999999999999999999999999718761247777788986286287788888644897--------2589
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999998535999999999-972998999999962888201236555262157899999999999989989999973544
Q gi|255764497|r 139 IFAIFTSQVWNMTFSMYQS-LCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGD 217 (587)
Q Consensus 139 i~~~~~~~~~~i~~~~~~~-l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~~~ 217 (587)
++.+.....+...+.+++. ++.-++|+.||||.+|+|+++.++|..+|...|.++....+.+..+......-..+|.+.
T Consensus 133 il~l~l~~w~~~ar~iR~~~l~~~~~~yV~AAr~~G~s~~~I~~rhilPni~~~i~v~~~~~~~~~Il~~a~LsFLGlG~ 212 (272)
T PRK10417 133 IIAIALSHWAWYARMVRSLVISLRQREFVLASRLSGAGHVRVFVDHLLGAVIPSLLVLATLDIGHMMLHVAGLSFLGLGV 212 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999988999999999999999989999999983958778322017676378999999999999999999999904789
Q ss_pred CCHHHHHHHHHHHHHHHHCCH
Q ss_conf 420367889999998631132
Q gi|255764497|r 218 TVIPLPGIGSYIALAIKEQDL 238 (587)
Q Consensus 218 ~~~~~~g~g~~~~~~~~~~~~ 238 (587)
+. ..+.-|..+.++.+....
T Consensus 213 ~p-p~~~WG~ml~~~~~~l~~ 232 (272)
T PRK10417 213 TA-PTAEWGVMINDARQFIWT 232 (272)
T ss_pred CC-CCCCHHHHHHHHHHHHHH
T ss_conf 99-998899999999999997
No 119
>COG0601 DppB ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.49 E-value=1e-10 Score=94.25 Aligned_cols=202 Identities=18% Similarity=0.150 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCCCH
Q ss_conf 8999999999999999999731000011245436--6789998544667754446999999999831-------556650
Q gi|255764497|r 378 YVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFR--PHISSKIQPFAQLLAAFPANVFFPLVVSCVS-------YYHLNP 448 (587)
Q Consensus 378 ~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~-------~~~~~~ 448 (587)
.+.....+|+..+..+..++..+|+++|...+++ ++.++..........++|........+..|+ ..+...
T Consensus 90 ~I~~~lp~Tl~L~~~a~iis~~lgi~LG~~aa~~~~~~~D~~~~~~~~~~~siP~F~~~~lli~~f~~~l~~~P~~g~~~ 169 (317)
T COG0601 90 LILERLPATLELALVALILAVLLGIPLGILAALKRGSWIDRLLRVLSLLGISIPSFWLGLLLILLFSVKLGWLPVGGRGS 169 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99988499999999999999999999999999448975999999999999960299999999999999967689888788
Q ss_pred ----------HHHH---HHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ----------4799---9999999999999999999-9739989999999749887899899985745778999999999
Q gi|255764497|r 449 ----------NLWL---SLLMIFGTQWYILFNVIAG-ASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITAC 514 (587)
Q Consensus 449 ----------~~~~---~~~~~~~~~~~~~~~~~~g-l~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~ 514 (587)
..-. ++...+.......+.+++. ++..++++.+.||.-|.++++..+|-.++-+.--+++..-..+
T Consensus 170 ~~~~~~~~~~~~h~iLP~~~L~~~~~a~~~r~~R~~~~e~l~~dyV~~AraKGl~~~~i~~kH~lrNa~iP~vt~~~~~~ 249 (317)
T COG0601 170 AGSWDSFLDALKHLILPALTLGLVSLAGIARLTRSSMLEVLNQDYVRTARAKGLSERRILFKHALRNALLPVITVLGLQL 249 (317)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHH
T ss_conf 65156799999999999999999999999999999999998668999999879992510398633764888999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999998505564422378379999999734979899999999999999999972157899987633
Q gi|255764497|r 515 GGAWNASIVSEVASWGHIHLRTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFLWHPLYLYGTRCLR 586 (587)
Q Consensus 515 ~~a~~~~~~ae~~~~~~~~~~~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~r~~ 586 (587)
+..+.+.++.|.+- +-.|+|++..++....|++.+.+..++.+++.+..|-+. .=+|.....|-|
T Consensus 250 ~~ll~GavivE~iF------~~pGiG~l~~~Ai~~~D~p~i~g~~~~~~~~~i~~nli~-Dily~~lDPRir 314 (317)
T COG0601 250 GGLLGGAVVVETVF------SWPGLGRLLVDAILNRDYPVVQGIVLVIALLVILGNLLV-DILYALLDPRIR 314 (317)
T ss_pred HHHHHCHHHHHHHC------CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCC
T ss_conf 99984687873540------877849999999982484999999999999999999999-999996497566
No 120
>TIGR02140 permease_CysW sulfate ABC transporter, permease protein CysW; InterPro: IPR011866 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CysW, one of two homologous, tandem permeases in the sulphate ABC transporter system; the other is CysT (IPR011865 from INTERPRO). The sulphate transporter has been described in Escherichia coli as transporting sulphate, thiosulphate, selenate, and selenite. Sulphate transporters may also transport molybdate ion if a specific molybdate transporter is not present.; GO: 0015116 sulfate transmembrane transporter activity, 0008272 sulfate transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=99.48 E-value=1.1e-13 Score=115.86 Aligned_cols=192 Identities=13% Similarity=0.047 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CC-------
Q ss_conf 8899999999999999999973100001124543667-89998544667754446999999999831----55-------
Q gi|255764497|r 377 LYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRPH-ISSKIQPFAQLLAAFPANVFFPLVVSCVS----YY------- 444 (587)
Q Consensus 377 ~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ip~~~~~~~~~~~~~----~~------- 444 (587)
.+...+...|+..+.+.+.+-++.|+..++...|++. -++.+..+.|...++-|.+-...+++.|| ..
T Consensus 43 Pd~~sA~~LTlLv~~I~VPlN~~FGv~~Aw~~~rf~FpGk~lL~t~iDlPFSVSPVvAGL~~~LLyGrqGW~~PliedGv 122 (275)
T TIGR02140 43 PDALSAIKLTLLVALIVVPLNTVFGVAAAWVLTRFQFPGKRLLLTIIDLPFSVSPVVAGLIFVLLYGRQGWSQPLIEDGV 122 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCC
T ss_conf 55899998988667653307889999999998743167457677777604432248999999998431001362234342
Q ss_pred ---C-CC------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf ---6-65------------0479999999999999999999999739989999999749887899899985745778999
Q gi|255764497|r 445 ---H-LN------------PNLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVT 508 (587)
Q Consensus 445 ---~-~~------------~~~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~ 508 (587)
+ .+ +..+++++-++.+.|++.|=.+-=+++.-+|-||||.++|||+||+||||+||.++=+++=
T Consensus 123 rfsG~lG~~l~~~d~~IiF~~PGivLAT~FVT~PFVAREliPvl~~qG~~~EeAAltLGAs~WqtFwrVTLPnIkWgLlY 202 (275)
T TIGR02140 123 RFSGWLGPWLEDRDIKIIFSLPGIVLATIFVTLPFVARELIPVLEEQGTEQEEAALTLGASWWQTFWRVTLPNIKWGLLY 202 (275)
T ss_pred CEECCCHHHHHHCCCEEEECCHHHHHHHHHHCCCEEEEECCHHHHHCCCHHHHHHHHHCCCCEEEEEEEECCCCHHHHHH
T ss_conf 00042027888628858871413410234325880122001136315946899998727762233356616871578985
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999985055644223783799999997349798999999999999999
Q gi|255764497|r 509 GAITACGGAWNASIVSEVASWGHIHLRTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLAL 569 (587)
Q Consensus 509 g~~~a~~~a~~~~~~ae~~~~~~~~~~~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (587)
|.+++-..+|-|- .|.-+..|+..-.++.+.=++.+-.+++|+...++....++++.+..
T Consensus 203 G~~LcnARamGEF-GAVsVVSG~IrG~TnTLPL~Ve~lY~~Y~~~AAFA~AslLal~Al~T 262 (275)
T TIGR02140 203 GVILCNARAMGEF-GAVSVVSGHIRGKTNTLPLHVELLYNEYQSEAAFAAASLLALLALVT 262 (275)
T ss_pred HHHHHCCHHHCCC-CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4677513020021-12568852689998763243232324013478899999999999999
No 121
>COG4662 TupA ABC-type tungstate transport system, periplasmic component [Coenzyme metabolism]
Probab=99.48 E-value=6.8e-11 Score=95.49 Aligned_cols=204 Identities=13% Similarity=0.003 Sum_probs=168.0
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CC
Q ss_conf 707406899999999999999999999999999999715026-78999999999743289999999999840145---54
Q gi|255764497|r 55 TLDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRL-GMVLVPILDIMQSIPILGFLTFTVVYFMNLYP---GK 130 (587)
Q Consensus 55 ~~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~-~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~---~~ 130 (587)
...+.++|+..++|+.....+..++.+.|+|+|+..+..++. ++.+..+.+.++++|......+...+....+| .+
T Consensus 15 ~~ld~~l~~iv~~tl~vSl~~i~laalv~~pLa~vl~~~~frgkr~i~~i~~tl~s~PTVlvGLlLylLlSr~GPlG~f~ 94 (227)
T COG4662 15 FSLDPELIGIVATTLYVSLISIFLAALVGVPLAFVLALREFRGKRFIKMIINTLLSMPTVLVGLLLYLLLSRSGPLGWFN 94 (227)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 81899999999999999999999999753289999998347547999999988631639999999999996469986303
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21047999999999853599999999997299899999996288820123655526215789999999999998998999
Q gi|255764497|r 131 VIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVAS 210 (587)
Q Consensus 131 ~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~ 210 (587)
.++...+.+...+....|.+.-....++|++||++.|.++++|+|+.|.+.++.- -++-++.+.....|+....+.+.+
T Consensus 95 LLfT~~amILGq~iL~lPlvia~~l~ale~~dpr~~ela~~lgas~~kl~~t~~~-Earf~l~aav~agfgR~V~EvG~A 173 (227)
T COG4662 95 LLFTQDAMILGQAILILPLVIAFVLTALESVDPRLKELARSLGASPLKLASTVFR-EARFGLMAAVAAGFGRAVAEVGVA 173 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6762106998879999999999999999845978999999809958999999999-998679999999861799986277
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99735444203678899999986311325699999999999999999999
Q gi|255764497|r 211 EMIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQLLF 260 (587)
Q Consensus 211 ~~~g~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 260 (587)
.|+|++-.. ....+-..+....+..+++...+...+...+++.++...-
T Consensus 174 mmvGGnI~g-~TR~itTAIslET~kG~fa~gIaLgiVLlaial~ln~vl~ 222 (227)
T COG4662 174 MMVGGNIRG-RTRVITTAISLETNKGNFAQGIALGIVLLAIALALNFVLT 222 (227)
T ss_pred HHCCCCCCC-EEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 603575111-2233002443560345298858999999999999999999
No 122
>PRK09881 ATP-dependent peptide transporter membrane subunit; Provisional
Probab=99.44 E-value=9.3e-10 Score=87.26 Aligned_cols=206 Identities=13% Similarity=0.080 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 0688999999999999999999731000011245436-678999854466775444699999999983155665047999
Q gi|255764497|r 375 DVLYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFR-PHISSKIQPFAQLLAAFPANVFFPLVVSCVSYYHLNPNLWLS 453 (587)
Q Consensus 375 ~~~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~ 453 (587)
....+......|+...+.+..++..+|..+|...+.+ ++.++.+....+.+.++|...+.......++... ...+
T Consensus 85 v~srll~G~r~sL~i~l~~~~i~~~iG~~lG~~aGy~gG~~D~il~ri~Dv~~aiP~lll~i~l~~~~g~~~----~~~i 160 (296)
T PRK09881 85 LFSRVLVGSQQSILAGLVVVAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSL----FNAM 160 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCH----HHHH
T ss_conf 999988879999999999999999999999998888176076655677763015860577788876516751----6888
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999999999-99739989999999749887899899985745778999999999999999999998505564
Q gi|255764497|r 454 LLMIFGTQWYILFNVIA-GASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGHI 532 (587)
Q Consensus 454 ~~~~~~~~~~~~~~~~~-gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~~~ 532 (587)
+.+.+...+...|.+++ .++.-++++.||||.+|+++++.++|-++|.+.|.++.-..+.+..++.....-.|+|-|..
T Consensus 161 l~i~l~~w~~~aR~vR~~~l~i~~~~yV~AAr~~G~s~~~Ii~rhiLPni~~~liv~~~~~~~~aIl~ea~LsFLGlG~~ 240 (296)
T PRK09881 161 LAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLINWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQ 240 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999879999999999999996349999999839886785414276661889999999999999999999999037899
Q ss_pred CCCCCCHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 422378379999999734--979899999999999999999972157899987633
Q gi|255764497|r 533 HLRTTGLGAYIAESTEKG--SFPEVVLGVLIMCCFVLALNRFLWHPLYLYGTRCLR 586 (587)
Q Consensus 533 ~~~~~GlG~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~r~~ 586 (587)
. .+...|.++.++++.. ++-....-.+.+.++++.+|.+ -+-|.+....|.|
T Consensus 241 p-p~~sWG~mi~~~~~~~~~~~w~~~~Pg~~i~l~vl~~nll-gdgLrd~ldPr~r 294 (296)
T PRK09881 241 Q-PSAEWGAMVANGRNYVLDQWWYCAFPGAAILLTAVGFNLF-GDGIRDLLDPKAG 294 (296)
T ss_pred C-CCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCC
T ss_conf 9-9985999999999999877299999999999999999999-9999998196557
No 123
>COG4209 LplB ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]
Probab=99.39 E-value=8.9e-10 Score=87.38 Aligned_cols=239 Identities=12% Similarity=0.031 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC--------------CCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999986410--------------233135203668707406899999999999999999999999
Q gi|255764497|r 19 IFDLLAFVLVIGIINILLHGIQET--------------TVPRDIVDIVPITLDVHSLPQYASRTTLRMLSAMVISLLFTF 84 (587)
Q Consensus 19 ~~~~~~~~~v~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~ 84 (587)
.+.++.++.++..+.+.+...... ..++..-..+....++..-.+.+.||+.......++++...+
T Consensus 21 ~L~LM~lPgliw~liF~YiPm~G~viAFkDy~p~~~i~~S~WVG~~~F~~lF~~~~ff~i~rNTl~~s~~~li~gf~~pI 100 (309)
T COG4209 21 ALLLMVLPGLIWFLIFKYIPMFGNVIAFKDYRPFLSITGSEWVGLKNFKFLFSSPDFFIILRNTLLYSVLFLILGFPVPI 100 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999977899999999874665312212564011135797513899999971873999999999999999999537999
Q ss_pred HHHHHHH--HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------CCCCCHHHHHHHHHHHHHHH--
Q ss_conf 9999997--150267899999999974328999999999984014-------------55421047999999999853--
Q gi|255764497|r 85 VYATLAA--KSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLY-------------PGKVIGAELAAIFAIFTSQV-- 147 (587)
Q Consensus 85 ~~a~~~~--~~~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~-------------~~~~~~~~~~~i~~~~~~~~-- 147 (587)
.+|++.. |+.+.+|..+...-++.-+.-.+.......++..+. +.+.....----........
T Consensus 101 ~lAillnElr~~~~kk~~QT~~y~PhFlSWVVv~~~v~~fls~d~GiiN~ll~~~g~~pi~fl~~~~wf~~i~i~~~vWK 180 (309)
T COG4209 101 ILAILLNELRNKVFKKVVQTISYLPHFLSWVVVSGFVFAFLSIDGGIINQLLMSLGGDPINFLTNPDWFRPIIIFSSVWK 180 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHHEEEHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEHHCCCCCHHHHHHHHHHHH
T ss_conf 99999999987778888766333000210030565788763667518999999828983102158860267887898884
Q ss_pred --HHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCHHHHH
Q ss_conf --59999999999729989999999628882012365552621578999999999999899-899999735444203678
Q gi|255764497|r 148 --WNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFF-VVASEMIVVGDTVIPLPG 224 (587)
Q Consensus 148 --~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~-~~~~~~~g~~~~~~~~~g 224 (587)
..-.....+++.++||++.|||+..||||||+.|||++|..+|-++--.++..+.-++. |+-.-.+.-+.+.....-
T Consensus 181 ~~G~~SIiylAai~~Idpt~YEAA~vDGA~rwqqiwhITlP~i~P~ivIllIL~iG~i~~~gFe~~yll~~~~~~~v~~v 260 (309)
T COG4209 181 GAGWNSIIYLAAIAGIDPTLYEAAMVDGASRWQQIWHITLPAIRPLIVILLILNIGNIFNAGFELFYLLPNPSGYDVTEV 260 (309)
T ss_pred HCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCCCHHHH
T ss_conf 23678899999997279999999980548877888821103231499999999852376537256066057668748989
Q ss_pred HHHHHH-HHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999-986311325699999999999999999
Q gi|255764497|r 225 IGSYIA-LAIKEQDLLAILYAMLTMLGVIFLYDQ 257 (587)
Q Consensus 225 ~g~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~ 257 (587)
+-.|+. ...+..|++..-++.+--.++.+++..
T Consensus 261 ldtYVy~~gl~~Gd~s~sTAaGlf~svVg~iLl~ 294 (309)
T COG4209 261 LDTYVYRGGLVTGDYSYSTAAGLFQSVVGFILLF 294 (309)
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999998101357511899999999999999999
No 124
>COG4215 ArtQ ABC-type arginine transport system, permease component [Amino acid transport and metabolism]
Probab=99.36 E-value=2.7e-10 Score=91.18 Aligned_cols=202 Identities=16% Similarity=0.079 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--------
Q ss_conf 06899999999999999999999999999999-715026789999999997432899999999998401455--------
Q gi|255764497|r 59 HSLPQYASRTTLRMLSAMVISLLFTFVYATLA-AKSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPG-------- 129 (587)
Q Consensus 59 ~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~-~~~~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~-------- 129 (587)
..+.+..+.|+.++.++.++++++|...|..- .++|..+....-...+.+.+|.+....+ .+||.....
T Consensus 8 ~~l~~ga~~Tl~lAv~sl~lgl~lGl~~A~~kls~~r~lr~~~~~YtTv~RGvPELl~ill--iyfG~~~lL~~~~~~~~ 85 (230)
T COG4215 8 DELLQGALVTLELAVCSLILGLLLGLLGALGKLSKNRLLRLLGNVYTTVIRGVPELLLILL--IYFGGQILLNTLADVTG 85 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH--HHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999999999999999999866660678975435355426719999999--99830999999998730
Q ss_pred ------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ------42104799999999985359999999999729989999999628882012365552621578999999999999
Q gi|255764497|r 130 ------KVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGG 203 (587)
Q Consensus 130 ------~~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~ 203 (587)
--+....+.++++.+..--|..-..+.+++++|+...||++.+|.|++|+|++|.+|++.+.-+.|.--.+..-
T Consensus 86 ~~g~~~idi~~FvaGviaL~~i~gAYatEt~RGA~~AVp~GQ~EAa~AlGms~~~~frrI~lPqm~R~ALPGlgN~Wlvl 165 (230)
T COG4215 86 ALGVGFIDISPFVAGVIALGLIFGAYATETLRGAFKAVPKGQIEAARALGLSRSQTFRRIVLPQMWRHALPGLGNLWLVL 165 (230)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 14777455674999999999999999899999999728965188999809987688999998889998278853026777
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899899999735444203678899999986311325-699999999999999999999898754443
Q gi|255764497|r 204 WFFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLL-AILYAMLTMLGVIFLYDQLLFRPMIVWSNK 269 (587)
Q Consensus 204 ~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 269 (587)
+.|......+|... +-.+-..+...-+.+ .-..+...+-+......+...+.++++.+|
T Consensus 166 lKDTALVSvIGl~d-------l~~~a~~aa~~Tk~pFtfy~~aa~iYL~~t~vS~~~l~~lErr~~r 225 (230)
T COG4215 166 LKDTALVSLIGLND-------LMRQTQLAAGSTKEPFTFYIVAALIYLVITLVSNVVLLFLERRASR 225 (230)
T ss_pred HHCCHHHHHHCHHH-------HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 63003542115999-------9999998734555543999999999999999999999999998542
No 125
>PRK10417 nikC nickel transporter permease NikC; Provisional
Probab=99.35 E-value=8.6e-10 Score=87.49 Aligned_cols=205 Identities=12% Similarity=0.023 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 688999999999999999999731000011245436-6789998544667754446999999999831556650479999
Q gi|255764497|r 376 VLYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFR-PHISSKIQPFAQLLAAFPANVFFPLVVSCVSYYHLNPNLWLSL 454 (587)
Q Consensus 376 ~~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (587)
+..+......|+...+.+..++..+|..+|...+.+ ++.++.+....+...++|...+.......++.+. ...++
T Consensus 59 ~srll~G~r~sl~i~l~~~~~~~~iG~~lG~~ag~~gg~~d~~~~~~~d~~~~iP~lll~i~l~~~~g~~~----~~~il 134 (272)
T PRK10417 59 FSRLMAGTRVSLGSVMACLLLVLALGLVIGGSAGLLGGRVDQATMRVADMFMTFPTSILSFFMVGVLGTGL----TNVII 134 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC----HHHHH
T ss_conf 99999999999999999999999999999999997187612477777889862862877888886448972----58999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999999999-97399899999997498878998999857457789999999999999999999985055644
Q gi|255764497|r 455 LMIFGTQWYILFNVIAG-ASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGHIH 533 (587)
Q Consensus 455 ~~~~~~~~~~~~~~~~g-l~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~~~~ 533 (587)
.+.+...+...|.+++- ++.-++|+.||||.+|+++++.++|-.+|.+.|.++.-....++.+......-.|+|-|..
T Consensus 135 ~l~l~~w~~~ar~iR~~~l~~~~~~yV~AAr~~G~s~~~I~~rhilPni~~~i~v~~~~~~~~~Il~~a~LsFLGlG~~- 213 (272)
T PRK10417 135 AIALSHWAWYARMVRSLVISLRQREFVLASRLSGAGHVRVFVDHLLGAVIPSLLVLATLDIGHMMLHVAGLSFLGLGVT- 213 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-
T ss_conf 9999889999999999999999899999999839587783220176763789999999999999999999999047899-
Q ss_pred CCCCCHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 223783799999997349--79899999999999999999972157899987633
Q gi|255764497|r 534 LRTTGLGAYIAESTEKGS--FPEVVLGVLIMCCFVLALNRFLWHPLYLYGTRCLR 586 (587)
Q Consensus 534 ~~~~GlG~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~r~~ 586 (587)
..+...|.++.++++... ....+.-.+.+.++++.+|.+ -+-|.+....|.|
T Consensus 214 pp~~~WG~ml~~~~~~l~~~pw~~~~P~~~i~l~vl~~nll-gd~Lrd~ldP~l~ 267 (272)
T PRK10417 214 APTAEWGVMINDARQFIWTQPLLMFWPGLALFISVMAFNLL-GDALRDHLDPHLV 267 (272)
T ss_pred CCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCC
T ss_conf 99988999999999999978499999999999999999999-9999996096645
No 126
>PRK10352 nickel transporter permease NikB; Provisional
Probab=99.35 E-value=3.5e-10 Score=90.35 Aligned_cols=205 Identities=14% Similarity=0.058 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CCC
Q ss_conf 688999999999999999999731000011245436--67899985446677544469999999998315-------566
Q gi|255764497|r 376 VLYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFR--PHISSKIQPFAQLLAAFPANVFFPLVVSCVSY-------YHL 446 (587)
Q Consensus 376 ~~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~-------~~~ 446 (587)
...+......|+..+..+..++..+|+++|...+.+ ++.++..........++|........+..|.. .+.
T Consensus 91 ~~~I~~~lp~Tl~L~~~a~~l~~~igi~lGi~aa~~~~~~~D~~~~~~~~~~~siP~F~la~lli~~fa~~l~~~P~~g~ 170 (314)
T PRK10352 91 LDDMLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYLQWLPAMGY 170 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 89888763788999999999999998599999872079721013105899878731999999999999996476787677
Q ss_pred CHHHHH---HHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 504799---9999999999999999999-973998999999974988789989998574577899999999999999999
Q gi|255764497|r 447 NPNLWL---SLLMIFGTQWYILFNVIAG-ASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASI 522 (587)
Q Consensus 447 ~~~~~~---~~~~~~~~~~~~~~~~~~g-l~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~ 522 (587)
+...-. ++...+....+..+.+++. ++..++++.+.||+-|.++++.++|-.++-+.+-+++..-..++.-+.+.+
T Consensus 171 ~~~~~liLP~l~l~l~~~a~~~r~~R~~~~e~l~~dyv~~ArakGls~~~i~~rh~lrnal~P~it~~~~~~~~ll~Gav 250 (314)
T PRK10352 171 GGWQHIILPAVSIAFMSLAINARLLRASMLDVAGQRHVTWARLRGLSDRQVERRHILRNASLPMITAVGMHIGELIGGTM 250 (314)
T ss_pred CCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 83365411199999999999999999999998632999999986989313608652874298899999999999847761
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99985055644223783799999997349798999999999999999999721578999876339
Q gi|255764497|r 523 VSEVASWGHIHLRTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFLWHPLYLYGTRCLRL 587 (587)
Q Consensus 523 ~ae~~~~~~~~~~~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~r~~~ 587 (587)
+.|.+- +-.|+|+++.++..+.|++.+.+.+++++++.+..|.+. .=+|.+...|-|.
T Consensus 251 ivE~iF------~~pGlG~ll~~Ai~~rD~p~v~g~~l~~~~~~v~~nli~-Dily~~lDPRiR~ 308 (314)
T PRK10352 251 IIENIF------AWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIV-DLLNAALDPRIRR 308 (314)
T ss_pred HEEHHH------CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCCC
T ss_conf 001875------476759999999981388999999999999999999999-9999964863157
No 127
>PRK10913 dipeptide transporter; Provisional
Probab=99.35 E-value=5.8e-10 Score=88.72 Aligned_cols=206 Identities=13% Similarity=0.082 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 06889999999999999999997310000112454366-78999854466775444699999999983155665047999
Q gi|255764497|r 375 DVLYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRP-HISSKIQPFAQLLAAFPANVFFPLVVSCVSYYHLNPNLWLS 453 (587)
Q Consensus 375 ~~~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~ 453 (587)
.+..+......|+...+.+..++..+|..+|...+.++ +.++.+....+.+.++|...+.......++.+ ....+
T Consensus 90 v~srll~G~r~Sl~ial~~~~i~~~iG~~iG~iaGy~gG~vD~~i~r~~di~~aiP~lll~l~l~~~~g~~----~~~~~ 165 (300)
T PRK10913 90 VLSRLMYGARLSLLVGCLVVVLSLVMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPS----IGNAA 165 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC----HHHHH
T ss_conf 99999999999999999999999999999999998038840788877766660688487768755304874----68999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999999999999-9739989999999749887899899985745778999999999999999999998505564
Q gi|255764497|r 454 LLMIFGTQWYILFNVIAG-ASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGHI 532 (587)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g-l~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~~~ 532 (587)
+++.+...|...|.+++- ++.-++|+.||||.+|+|+|+.++|-.+|.+.|.++....+.+..+......-.|+|-|..
T Consensus 166 lal~~~~w~~~aR~vR~~vl~~~~~~yV~AAr~~G~s~~rIi~~hIlPnv~~~iiv~~~l~~~~aIl~ea~LsFLGlG~~ 245 (300)
T PRK10913 166 LALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQ 245 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999989999999999999986158999999849997478643342665889999999999999999999999247899
Q ss_pred CCCCCCHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 42237837999999973--4979899999999999999999972157899987633
Q gi|255764497|r 533 HLRTTGLGAYIAESTEK--GSFPEVVLGVLIMCCFVLALNRFLWHPLYLYGTRCLR 586 (587)
Q Consensus 533 ~~~~~GlG~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~r~~ 586 (587)
. .+.-.|.++.++++. ..+-.+..-.+.+.++++.+|.+ -+-|.+-...|.|
T Consensus 246 p-p~~sWG~ml~~~~~~~~~~pw~~~~Pg~~i~l~vl~~nll-gdgLrdaldPrlr 299 (300)
T PRK10913 246 P-PTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAFNLM-GDGLRDALDPKLK 299 (300)
T ss_pred C-CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCC
T ss_conf 9-9883999999999999848399999999999999999999-9999987191017
No 128
>COG4208 CysW ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.34 E-value=4.1e-11 Score=97.07 Aligned_cols=193 Identities=13% Similarity=0.034 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH-------
Q ss_conf 88999999999999999999731000011245436678-9998544667754446999999999831556650-------
Q gi|255764497|r 377 LYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRPHI-SSKIQPFAQLLAAFPANVFFPLVVSCVSYYHLNP------- 448 (587)
Q Consensus 377 ~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~------- 448 (587)
...+.+...|+..+.+++.+-.+.|+..++...+++.. ++.+....+...++.+.+-...+++.||..+.-.
T Consensus 61 PdalsAi~LTllva~I~VPlN~vFGv~aAW~iakf~F~Gk~lL~tlIDlPFsVSPVvaGl~~vLl~g~~g~lG~wl~~~~ 140 (287)
T COG4208 61 PDALSAIKLTLLVALIAVPLNVVFGVAAAWAIARFEFPGKALLLTLIDLPFSVSPVVAGLVYVLLFGSNGWLGGWLEAHD 140 (287)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCC
T ss_conf 66899999999999863007899999999999970588444665654377742279987899998705663207888579
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ------47999999999999999999999973998999999974988789989998574577899999999999999999
Q gi|255764497|r 449 ------NLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASI 522 (587)
Q Consensus 449 ------~~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~ 522 (587)
...++..-.+.++|++.|-.+.=+|+-.++-||||.++|+|+||+||+|+||-++=+++=|.++.-..++.+.-
T Consensus 141 iqIiFa~PGiVLaT~FVT~PFVaREliPlmq~qG~~eEeAA~~LGAsgWQtFwrVTLPnIkWgLlYGvvL~nARamGEFG 220 (287)
T COG4208 141 IQIIFAVPGIVLATIFVTCPFVARELIPLMQEQGTDEEEAALTLGASGWQTFWRVTLPNIRWGLLYGVVLTNARAMGEFG 220 (287)
T ss_pred CEEEEECCCCEEEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCHHHHCCCC
T ss_conf 46999547413545222161289898799988398488999872623011025675473079998889871605541677
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999850556442237837999999973497989999999999999999
Q gi|255764497|r 523 VSEVASWGHIHLRTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALN 570 (587)
Q Consensus 523 ~ae~~~~~~~~~~~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (587)
|.-+..|+..--+..+.-.+..-.+.+|+...++....++++.+..-
T Consensus 221 -AVsVVSG~IrG~TnTlPL~VEily~eY~~~~AFa~AslLallAlvTL 267 (287)
T COG4208 221 -AVSVVSGHIRGETNTLPLHVEILYNEYNTVGAFAAASLLALLALVTL 267 (287)
T ss_pred -CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -36998445247766523016988764468899999999999999999
No 129
>PRK09471 oppB oligopeptide transporter permease; Reviewed
Probab=99.33 E-value=9.4e-10 Score=87.20 Aligned_cols=203 Identities=14% Similarity=0.074 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CCCC
Q ss_conf 88999999999999999999731000011245436--67899985446677544469999999998315-------5665
Q gi|255764497|r 377 LYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFR--PHISSKIQPFAQLLAAFPANVFFPLVVSCVSY-------YHLN 447 (587)
Q Consensus 377 ~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~-------~~~~ 447 (587)
..+......|+..+..++.++..+|+++|...+.+ ++.++..........++|...+....+..|.. ++..
T Consensus 88 ~~i~~~lp~Tl~L~~~a~~i~~~lgi~lGi~aa~~~~~~~D~~~~~~~~~~~siP~F~la~lli~iF~~~l~~~P~~g~~ 167 (306)
T PRK09471 88 DLVASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVIPSFVVAPLLVMIFAIILHWLPGGGWN 167 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99998889999999999999999999999999983475161999999999999899999999988999721763778887
Q ss_pred H--HH---HHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0--47---999999999999999999999-97399899999997498878998999857457789999999999999999
Q gi|255764497|r 448 P--NL---WLSLLMIFGTQWYILFNVIAG-ASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNAS 521 (587)
Q Consensus 448 ~--~~---~~~~~~~~~~~~~~~~~~~~g-l~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~ 521 (587)
. .. .-++...+.......+.+++. ++..++++.+.||+-|.++++.++|-.++-+.+-+++..-..++.-..+.
T Consensus 168 ~~~~~~liLP~~~l~l~~~~~~~r~~R~~~~~~l~~dyV~~ArakGl~~~~i~~rh~lrnal~P~it~~~~~~~~ll~Gs 247 (306)
T PRK09471 168 GGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYMGPAFVGIITGS 247 (306)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 52078875369999999999999999999999987799999998699840073001298429999999999999984587
Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99998505564422378379999999734979899999999999999999972157899987633
Q gi|255764497|r 522 IVSEVASWGHIHLRTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFLWHPLYLYGTRCLR 586 (587)
Q Consensus 522 ~~ae~~~~~~~~~~~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~r~~ 586 (587)
++.|-+- +-.|+|.++.++..+.|++.+.+.+++++++.+..|.+. .=+|.+...|-|
T Consensus 248 vivE~iF------~~PGiG~l~~~Ai~~~D~p~v~g~~l~~a~~~i~~nll~-Dil~~~lDPRiR 305 (306)
T PRK09471 248 MVIETIF------GLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIV-DVLYAVIDPKIR 305 (306)
T ss_pred HHHHHHH------CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCC
T ss_conf 1210986------476759999999980498999999999999999999999-999997297558
No 130
>PRK10914 dipeptide transporter permease DppB; Provisional
Probab=99.30 E-value=2.5e-09 Score=84.08 Aligned_cols=204 Identities=18% Similarity=0.138 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------CC
Q ss_conf 6889999999999999999997310000112454366--78999854466775444699999999983155-------66
Q gi|255764497|r 376 VLYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRP--HISSKIQPFAQLLAAFPANVFFPLVVSCVSYY-------HL 446 (587)
Q Consensus 376 ~~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~-------~~ 446 (587)
...+......|+..+..+..++..+|+++|...+..+ +.++..........++|...+....+..|+.. +.
T Consensus 89 ~~~i~~~lp~Tl~L~~~a~il~~~igi~lGi~aa~~~~~~~D~~~~~~~~~~~siP~F~lallli~if~~~l~~~P~~G~ 168 (339)
T PRK10914 89 WEEFVPRFKATLELGVCAMIFATAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGR 168 (339)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99998727258999999999999999999999998527511136788898612306999999999999999574777676
Q ss_pred -CH-------------------------H-----HHH---HHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHCCCCHH
Q ss_conf -50-------------------------4-----799---9999999999999999999-97399899999997498878
Q gi|255764497|r 447 -NP-------------------------N-----LWL---SLLMIFGTQWYILFNVIAG-ASAFPNDFKEVASSFHITGW 491 (587)
Q Consensus 447 -~~-------------------------~-----~~~---~~~~~~~~~~~~~~~~~~g-l~~i~~~l~eaa~~lGa~~~ 491 (587)
+. . .-. ++...+.......+.+++. ++..++++.+.||+-|.+++
T Consensus 169 ~~~~~~~~~~~p~~g~~~~~~~~~g~~~~~~~~l~hliLP~l~L~l~~~a~~~r~~R~~~~~~l~~dyV~~ArakGl~~~ 248 (339)
T PRK10914 169 VSDMVFLDDSNPLTGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARAKGLTRM 248 (339)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 76531246666655410011142045113788999999999999999999999999999999983499999998594933
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99899985745778999999999999999999998505564422378379999999734979899999999999999999
Q gi|255764497|r 492 RWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGHIHLRTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNR 571 (587)
Q Consensus 492 ~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~~~~~~~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (587)
+.++|-.++-+.+-+++..-..++.-..+.++.|.+- +-.|+|.++.++..+.|++.+.+.++++++..+..|.
T Consensus 249 ~i~~~h~lrnal~P~it~~g~~~~~ll~GsvivE~vF------~~pGiG~l~~~Ai~~rD~pvi~g~~l~~~~~~i~~nl 322 (339)
T PRK10914 249 RVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIF------SWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNL 322 (339)
T ss_pred HEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 1404983986099899999999999997699986986------7757699999999835889999999999999999999
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 972157899987633
Q gi|255764497|r 572 FLWHPLYLYGTRCLR 586 (587)
Q Consensus 572 l~~~~l~~~~~~r~~ 586 (587)
+. .=+|.+...|-|
T Consensus 323 i~-Dil~~~lDPRiR 336 (339)
T PRK10914 323 LV-DLLYGVVNPRIR 336 (339)
T ss_pred HH-HHHHHHCCCCCC
T ss_conf 99-999986284047
No 131
>COG0601 DppB ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.29 E-value=6.7e-09 Score=81.04 Aligned_cols=191 Identities=16% Similarity=0.128 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCC---
Q ss_conf 89999999999999999999999999999971--5026789999999997432899999999998401---455421---
Q gi|255764497|r 61 LPQYASRTTLRMLSAMVISLLFTFVYATLAAK--SRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNL---YPGKVI--- 132 (587)
Q Consensus 61 l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~--~~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~---~~~~~~--- 132 (587)
+.+.+.+|+.+++.+.+++.++|+++|.++++ +++.++.+.....+..++|.+..+...+..|+.. .|....
T Consensus 91 I~~~lp~Tl~L~~~a~iis~~lgi~LG~~aa~~~~~~~D~~~~~~~~~~~siP~F~~~~lli~~f~~~l~~~P~~g~~~~ 170 (317)
T COG0601 91 ILERLPATLELALVALILAVLLGIPLGILAALKRGSWIDRLLRVLSLLGISIPSFWLGLLLILLFSVKLGWLPVGGRGSA 170 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99884999999999999999999999999994489759999999999999602999999999999999676898887886
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ----------0479999999998535999999999-97299899999996288820123655526215789999999999
Q gi|255764497|r 133 ----------GAELAAIFAIFTSQVWNMTFSMYQS-LCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMS 201 (587)
Q Consensus 133 ----------~~~~~~i~~~~~~~~~~i~~~~~~~-l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~ 201 (587)
....--.++.+........+.++++ ++...+|+.+.||.-|.++++..+|..++.++..+++...+.++
T Consensus 171 ~~~~~~~~~~~h~iLP~~~L~~~~~a~~~r~~R~~~~e~l~~dyV~~AraKGl~~~~i~~kH~lrNa~iP~vt~~~~~~~ 250 (317)
T COG0601 171 GSWDSFLDALKHLILPALTLGLVSLAGIARLTRSSMLEVLNQDYVRTARAKGLSERRILFKHALRNALLPVITVLGLQLG 250 (317)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 51567999999999999999999999999999999999986689999998799925103986337648889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99899899999735444203678899999986311325699999999999999999
Q gi|255764497|r 202 GGWFFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQ 257 (587)
Q Consensus 202 ~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 257 (587)
..++...+.|.+= ..+|+|....++..+.|+............+.++.+.
T Consensus 251 ~ll~GavivE~iF------~~pGiG~l~~~Ai~~~D~p~i~g~~~~~~~~~i~~nl 300 (317)
T COG0601 251 GLLGGAVVVETVF------SWPGLGRLLVDAILNRDYPVVQGIVLVIALLVILGNL 300 (317)
T ss_pred HHHHCHHHHHHHC------CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9984687873540------8778499999999824849999999999999999999
No 132
>COG4662 TupA ABC-type tungstate transport system, periplasmic component [Coenzyme metabolism]
Probab=99.23 E-value=1.8e-08 Score=77.96 Aligned_cols=195 Identities=18% Similarity=0.156 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCC------H
Q ss_conf 889999999999999999997310000112454366-7899985446677544469999999998315-5665------0
Q gi|255764497|r 377 LYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRP-HISSKIQPFAQLLAAFPANVFFPLVVSCVSY-YHLN------P 448 (587)
Q Consensus 377 ~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~-~~~~------~ 448 (587)
..++.....|+.....+..++...++|++....... +.++++....+...+.|.....-...+.... ++.+ +
T Consensus 19 ~~l~~iv~~tl~vSl~~i~laalv~~pLa~vl~~~~frgkr~i~~i~~tl~s~PTVlvGLlLylLlSr~GPlG~f~LLfT 98 (227)
T COG4662 19 PELIGIVATTLYVSLISIFLAALVGVPLAFVLALREFRGKRFIKMIINTLLSMPTVLVGLLLYLLLSRSGPLGWFNLLFT 98 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 99999999999999999999997532899999983475479999999886316399999999999964699863036762
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 47999999999999999999999973998999999974988789989998574577899999999999999999999850
Q gi|255764497|r 449 NLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVAS 528 (587)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~ 528 (587)
..+.+.-..+..+|.++-.....++++||++.|-++++|+|+.|.+.++.- -++-++.+....+++.+..++-++-|+|
T Consensus 99 ~~amILGq~iL~lPlvia~~l~ale~~dpr~~ela~~lgas~~kl~~t~~~-Earf~l~aav~agfgR~V~EvG~AmmvG 177 (227)
T COG4662 99 QDAMILGQAILILPLVIAFVLTALESVDPRLKELARSLGASPLKLASTVFR-EARFGLMAAVAAGFGRAVAEVGVAMMVG 177 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 106998879999999999999999845978999999809958999999999-9986799999998617999862776035
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 556442237837999999973497989999999999999999997
Q gi|255764497|r 529 WGHIHLRTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFL 573 (587)
Q Consensus 529 ~~~~~~~~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 573 (587)
||....+.-+...|....+.||+++..+-.+++..+...+|...
T Consensus 178 -GnI~g~TR~itTAIslET~kG~fa~gIaLgiVLlaial~ln~vl 221 (227)
T COG4662 178 -GNIRGRTRVITTAISLETNKGNFAQGIALGIVLLAIALALNFVL 221 (227)
T ss_pred -CCCCCEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -75111223300244356034529885899999999999999999
No 133
>COG4215 ArtQ ABC-type arginine transport system, permease component [Amino acid transport and metabolism]
Probab=99.21 E-value=7.8e-09 Score=80.55 Aligned_cols=166 Identities=11% Similarity=0.074 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHC
Q ss_conf 0688999999999999999999731000011245-4366789998544667754446999999999-----------831
Q gi|255764497|r 375 DVLYVIWLGCITMFRVVVLIIIASIIWIPVGIWI-GFRPHISSKIQPFAQLLAAFPANVFFPLVVS-----------CVS 442 (587)
Q Consensus 375 ~~~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~-----------~~~ 442 (587)
....+......|+..++.++.++.++|...+... ..++..+....-....++.+|.++.+.+..- .++
T Consensus 6 ~~~~l~~ga~~Tl~lAv~sl~lgl~lGl~~A~~kls~~r~lr~~~~~YtTv~RGvPELl~illiyfG~~~lL~~~~~~~~ 85 (230)
T COG4215 6 WGDELLQGALVTLELAVCSLILGLLLGLLGALGKLSKNRLLRLLGNVYTTVIRGVPELLLILLIYFGGQILLNTLADVTG 85 (230)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 07999999999999999999999999999999986666067897543535542671999999999830999999998730
Q ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -----556650479999999999999999999999739989999999749887899899985745778999999999999
Q gi|255764497|r 443 -----YYHLNPNLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGA 517 (587)
Q Consensus 443 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a 517 (587)
....++..+-++...+..--|.....+.+++.||+...||++.+|.|++|+||+|++|.+.+.=+-|+-.-+-.-
T Consensus 86 ~~g~~~idi~~FvaGviaL~~i~gAYatEt~RGA~~AVp~GQ~EAa~AlGms~~~~frrI~lPqm~R~ALPGlgN~Wlvl 165 (230)
T COG4215 86 ALGVGFIDISPFVAGVIALGLIFGAYATETLRGAFKAVPKGQIEAARALGLSRSQTFRRIVLPQMWRHALPGLGNLWLVL 165 (230)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 14777455674999999999999999899999999728965188999809987688999998889998278853026777
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 999999998505564422378379999999734
Q gi|255764497|r 518 WNASIVSEVASWGHIHLRTTGLGAYIAESTEKG 550 (587)
Q Consensus 518 ~~~~~~ae~~~~~~~~~~~~GlG~~i~~~~~~~ 550 (587)
.|..-.. +--|+.-.+.+++...
T Consensus 166 lKDTALV----------SvIGl~dl~~~a~~aa 188 (230)
T COG4215 166 LKDTALV----------SLIGLNDLMRQTQLAA 188 (230)
T ss_pred HHCCHHH----------HHHCHHHHHHHHHHHH
T ss_conf 6300354----------2115999999999873
No 134
>TIGR02790 nickel_nikC nickel ABC transporter, permease subunit NikC; InterPro: IPR014157 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases..
Probab=99.19 E-value=1.2e-07 Score=71.97 Aligned_cols=188 Identities=17% Similarity=0.152 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 068999999999999999999999999999997150-2678999999999743289999999999840145542104799
Q gi|255764497|r 59 HSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSR-RLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVIGAELA 137 (587)
Q Consensus 59 ~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~-~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~~~~~~~~ 137 (587)
.++.--+-+||..++........+|++.|..+++.- +.+..+...+|+..++|..+.+....-.+|+|. .-
T Consensus 55 SRl~~G~R~SLg~al~~l~~~~~iG~~iG~~aGy~GG~vD~~~MR~~D~~lsfPt~~L~L~ivG~lG~Gl--------~n 126 (258)
T TIGR02790 55 SRLLFGARVSLGLALLVLGLVLVIGVLIGLIAGYIGGRVDEVIMRVCDVFLSFPTIVLALAIVGLLGPGL--------EN 126 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHCCCH--------HH
T ss_conf 9999999999999999999999999999998530154020002554758875578999999985743479--------99
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999985359---99999999972998999999962888201236555262157899999999999989989999973
Q gi|255764497|r 138 AIFAIFTSQVWN---MTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIV 214 (587)
Q Consensus 138 ~i~~~~~~~~~~---i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g 214 (587)
+++++....-++ +++...-++|+ +|+.++||..|+|+||+++|+.+|...|.++.=..+-.+...-+.-.-..+|
T Consensus 127 viiA~vl~~Wa~YAR~vRg~v~Slk~--~~fvlaar~~g~s~~~ii~rHi~~~i~~~iiVLaTLeiG~~il~ia~LSFLG 204 (258)
T TIGR02790 127 VIIALVLVQWAWYARMVRGMVVSLKQ--KEFVLAARASGASHWQIIRRHILPNILSPIIVLATLEIGHVILHIAALSFLG 204 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHCCCCCEEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999997547899999999999986--8899999997589844504211321014799999689999999998766742
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHH
Q ss_conf 5444203678899999986311325--699999999999999999
Q gi|255764497|r 215 VGDTVIPLPGIGSYIALAIKEQDLL--AILYAMLTMLGVIFLYDQ 257 (587)
Q Consensus 215 ~~~~~~~~~g~g~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~ 257 (587)
-|-+. ..+.=|..+.++.+..... ...+=.+.++..+..++.
T Consensus 205 LGiQP-PtPEWG~Ml~eak~y~~t~P~lmiyPG~ail~~V~~FNl 248 (258)
T TIGR02790 205 LGIQP-PTPEWGIMLSEAKEYLRTQPELMIYPGLAILITVMAFNL 248 (258)
T ss_pred CCCCC-CCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_conf 37898-783456468876898862717888865999999999973
No 135
>TIGR03004 ectoine_ehuC ectoine/hydroxyectoine ABC transporter, permease protein EhuC; InterPro: IPR014342 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Members of this entry are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain other genes of the ABC transporter and are typically found next to either ectoine utilization or ectoine biosynthesis operons. Permease subunits EhuC and EhuD are homologues..
Probab=99.11 E-value=7.9e-08 Score=73.26 Aligned_cols=204 Identities=13% Similarity=0.059 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 89999999999999999999999999999-97150267899999999974328999999999984014554210479999
Q gi|255764497|r 61 LPQYASRTTLRMLSAMVISLLFTFVYATL-AAKSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVIGAELAAI 139 (587)
Q Consensus 61 l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~-~~~~~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~~~~~~~~~i 139 (587)
+||-.+-|+.+.+.+.+++++.++..|+. +.+.+..+..-.-...+.+.-.-++-..........-+.+-.+......+
T Consensus 7 ~lQGAwVT~~iTl~gs~la~V~Af~aglgr~s~~~~lr~~a~~YiE~FRGTSllVQLFW~yfvLPlPP~gl~l~P~t~gv 86 (216)
T TIGR03004 7 LLQGAWVTLQITLAGSVLAVVVAFLAGLGRLSRFRILRALAVVYIEVFRGTSLLVQLFWLYFVLPLPPIGLELDPLTVGV 86 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 99889999999999999999999999887523535887777787544203789999999999725799984025189999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999853599999999997299899999996288820123655526215789999999999998998999997354442
Q gi|255764497|r 140 FAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTV 219 (587)
Q Consensus 140 ~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~~~~~ 219 (587)
.+...+.--|=.=-++.+++++.++..||++.+.-+|+|+++||.||++.+..+...--...+.++......++.-.+-+
T Consensus 87 ~~Lglh~GaYGAEivRGA~~sv~~~Q~EAc~ALNftrfq~~rrI~LPQAl~~mmp~fgNlaIElLK~tslVSLIslaDlt 166 (216)
T TIGR03004 87 LALGLHVGAYGAEIVRGAVKSVSKEQLEACIALNFTRFQALRRIVLPQALVEMMPAFGNLAIELLKLTSLVSLISLADLT 166 (216)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99997326501688888899743658999998415367799876326799974386615899999878999999998676
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 036788999999863113256999999999999999999998987544432
Q gi|255764497|r 220 IPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQLLFRPMIVWSNKF 270 (587)
Q Consensus 220 ~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 270 (587)
+..+ .-.....|.-..++..+.+-.++-.+..+..|.+++..+|-
T Consensus 167 F~Aq------~~r~~T~~tl~~fa~~LL~YFvMa~~i~l~~R~lEr~v~RG 211 (216)
T TIGR03004 167 FRAQ------SVRALTLDTLKVFALILLLYFVMALIISLAMRVLERRVARG 211 (216)
T ss_pred HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999------99984100279999999999999999999999886664067
No 136
>COG4135 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=99.10 E-value=2.3e-07 Score=69.87 Aligned_cols=154 Identities=13% Similarity=0.117 Sum_probs=112.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHCCCCCCCCHH
Q ss_conf 40689999999999999999999999999999971502678999999999743289--99-9999999840145542104
Q gi|255764497|r 58 VHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLGMVLVPILDIMQSIPIL--GF-LTFTVVYFMNLYPGKVIGA 134 (587)
Q Consensus 58 ~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~~~~~~~~l~~~~~iP~~--~~-~~~~~~~f~~~~~~~~~~~ 134 (587)
.++.+.+...|..++..+.-++++.++..=++-+.+.|.... ..+-++.-.|.+ ++ ......+.+.. ++
T Consensus 343 ~P~~l~n~~T~vllAlsasslALll~iL~le~~~~~qR~~~~--~~l~LP~LlP~lslvfG~qvL~L~~~l~------~~ 414 (551)
T COG4135 343 LPEALINSLTMVLLALSASSLALLLLILWLEWGGIPQRRQAY--LWLWLPILLPALSLVFGQQVLALWLGLD------GS 414 (551)
T ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCC------CC
T ss_conf 599987456599999720459999999999957983201106--8888888766778998899999996268------74
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999999998535999999999972998999999962888201236555262157899999999999989989999973
Q gi|255764497|r 135 ELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIV 214 (587)
Q Consensus 135 ~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g 214 (587)
+..++..+....+|.+++......|++|++.+.-|+++|-|+||+|++|.+|+..|....+....|..+..-+.--.++|
T Consensus 415 w~~Vvw~H~~fv~P~v~l~Ls~pWq~~dsrf~kIA~~lGks~~~Iff~vklPLlfra~L~A~AVGfaVsiaqYlPTL~lG 494 (551)
T COG4135 415 WTAVVWGHLLFVMPWVLLILSPPWQRIDSRFIKIAQTLGKSRAKIFFYVKLPLLFRACLIAFAVGFSVSIAQYLPTLWLG 494 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHCHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 39999999999999999984745755270899999870830667888750457679999999987674299761478226
Q ss_pred CCCCC
Q ss_conf 54442
Q gi|255764497|r 215 VGDTV 219 (587)
Q Consensus 215 ~~~~~ 219 (587)
.|.-+
T Consensus 495 ~GRlt 499 (551)
T COG4135 495 AGRLT 499 (551)
T ss_pred CCCCC
T ss_conf 77664
No 137
>TIGR01253 thiP thiamine/thiamine pyrophosphate ABC transporter, permease protein; InterPro: IPR005947 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents thiamine ABC transporter, permease protein in bacteria, believed to be involved in the specific translocation of thiamine and its phosphoesters across the inner membrane. The protein belongs to the larger ABC transport system. It has been experimentally demonstrated that mutants in the various steps in the de novo synthesis of thiamine and its biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). Thiamine pyrophosphate (TPP)1 is a required cofactor synthesized de novo in Salmonella typhimurium. The primary role for TPP is in central metabolism as an electron carrier and nucleophile for such enzymes as pyruvate dehydrogenase (1.2.4.1 from EC), acetolactate synthase (4.1.3.18 from EC), and -ketoglutarate dehydrogenase (1.2.4.2 from EC). Despite its importance in cellular physiology, neither the de novo biosynthetic pathway nor the salvage systems for thiamine are fully understood in any organism.; GO: 0005215 transporter activity, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=99.08 E-value=4.8e-07 Score=67.55 Aligned_cols=201 Identities=15% Similarity=0.141 Sum_probs=147.8
Q ss_pred CHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 036687074068999999999999999999999999999997150267-----899999999974328999999999984
Q gi|255764497|r 50 DIVPITLDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLG-----MVLVPILDIMQSIPILGFLTFTVVYFM 124 (587)
Q Consensus 50 ~~~~~~~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~~-----~~~~~~l~~~~~iP~~~~~~~~~~~f~ 124 (587)
........++.+|+.++.|+..+..+.++|+...+.+=+..=+-+... ..+.-.=-+.-++|.++.+.-.-.+..
T Consensus 310 ~~L~~V~~~~~LW~AL~~SL~IA~~~~~L~~~l~~~LL~~SR~L~~~~~~~~~Q~~~~~GM~ILA~P~~VLA~GlFLLL~ 389 (519)
T TIGR01253 310 RNLLEVLANSVLWRALGYSLRIALLAALLALVLAIALLLLSRRLRALQKQKISQVLINAGMLILAIPILVLATGLFLLLN 389 (519)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 34688873247899998899999999999999999999875889999878898899984289999779999998999861
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01455421047999999999853599999999997299899999996288820123655526215789999999999998
Q gi|255764497|r 125 NLYPGKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGW 204 (587)
Q Consensus 125 ~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~ 204 (587)
... ........-++|+-++...|++.+-..+=++++-+.++.-.+++|-.+||+|.-|++-..+-.+..+..++...++
T Consensus 390 ~~~-~~~~~~~~IV~F~NAL~A~Py~L~~L~~P~~~~~~~Y~~LC~SLGI~GW~Rl~~~E~~~L~~PL~~AlAl~~~LS~ 468 (519)
T TIGR01253 390 DRI-FLNIDLDIIVVFTNALSAIPYVLKVLEAPFRDITARYENLCNSLGIVGWSRLKLVELKALKAPLAYALALALVLSL 468 (519)
T ss_pred CCC-CCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 346-7775420101345477763599998405157889999875532173300477888799987799999999999852
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 998999997354442036788999999863113256999999999999999
Q gi|255764497|r 205 FFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLY 255 (587)
Q Consensus 205 ~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 255 (587)
+||++..++| ++++...|- +.+++.++.....+.....++.+++.++
T Consensus 469 GDF~~~ALFG-N~~F~~LP~---~LYQQ~G~YR~QD~AVTA~ILLLLC~~L 515 (519)
T TIGR01253 469 GDFTVVALFG-NDDFRSLPF---LLYQQLGSYRSQDAAVTALILLLLCFLL 515 (519)
T ss_pred HHHHHEEEEC-CCCCCHHHH---HHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 1156200103-753211378---9998723533613899999999999999
No 138
>COG4132 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=99.04 E-value=1.4e-07 Score=71.35 Aligned_cols=137 Identities=15% Similarity=0.194 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 04799999999999999999999997399899999997498878998999857457789999999999999999999985
Q gi|255764497|r 448 PNLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVA 527 (587)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~ 527 (587)
+.+...+.+...-.|..+.-...+++...+|-.||++.+|++.||.+|+|.+|...|+++.....-+..++.+.-.+--+
T Consensus 146 s~~GltitY~yFQIPL~vlil~PA~dgLk~ewreaa~~LGa~~~qYWrmva~PiL~PsllGt~vlLfANAfGA~ATayaL 225 (282)
T COG4132 146 SFFGLTITYVYFQIPLMVLILTPAFDGLKKEWREAAAILGATGWQYWRMVALPILWPSLLGTFVLLFANAFGAYATAYAL 225 (282)
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86252577578865689998976666678999999998677428999999899851999888999999877577878775
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 05564422378379999999734979899999999999999999972157899987633
Q gi|255764497|r 528 SWGHIHLRTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFLWHPLYLYGTRCLR 586 (587)
Q Consensus 528 ~~~~~~~~~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~r~~ 586 (587)
.+++-+...--++.+|. +.-..|..+.++-...|.++.-+ ..++..-|.+++||-.|
T Consensus 226 tgsslNivPI~l~AqIr-GDVl~np~lg~ALa~~mi~it~v-~n~~~~wlr~rs~r~~k 282 (282)
T COG4132 226 TGSSLNIVPILLYAQIR-GDVLHNPNLGYALAFGMIVITGV-ANLLYIWLRKRSERWLK 282 (282)
T ss_pred CCCCCCHHHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCC
T ss_conf 06875416899999982-14568951899999999999999-99999999987777309
No 139
>TIGR03004 ectoine_ehuC ectoine/hydroxyectoine ABC transporter, permease protein EhuC; InterPro: IPR014342 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Members of this entry are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain other genes of the ABC transporter and are typically found next to either ectoine utilization or ectoine biosynthesis operons. Permease subunits EhuC and EhuD are homologues..
Probab=99.04 E-value=4.7e-08 Score=74.90 Aligned_cols=201 Identities=10% Similarity=0.021 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--HCCCCCCHHH
Q ss_conf 88999999999999999999731000011245-436678999854466775444699---99999998--3155665047
Q gi|255764497|r 377 LYVIWLGCITMFRVVVLIIIASIIWIPVGIWI-GFRPHISSKIQPFAQLLAAFPANV---FFPLVVSC--VSYYHLNPNL 450 (587)
Q Consensus 377 ~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ip~~~---~~~~~~~~--~~~~~~~~~~ 450 (587)
+.++--.+.|+.-...|..++++++...|... .+.+..+....--.++.+..-..+ |..+...+ ++....+ ..
T Consensus 5 pl~lQGAwVT~~iTl~gs~la~V~Af~aglgr~s~~~~lr~~a~~YiE~FRGTSllVQLFW~yfvLPlPP~gl~l~P-~t 83 (216)
T TIGR03004 5 PLLLQGAWVTLQITLAGSVLAVVVAFLAGLGRLSRFRILRALAVVYIEVFRGTSLLVQLFWLYFVLPLPPIGLELDP-LT 83 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH-HH
T ss_conf 57998899999999999999999999998875235358877777875442037899999999997257999840251-89
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999999999999997399899999997498878998999857457789999999999999999999985055
Q gi|255764497|r 451 WLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWG 530 (587)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~ 530 (587)
..+.......=-|...-++.++++|.++..||++.+.-+|+|++|||.||++.+..+...-.-..=-.|...+.-++.-.
T Consensus 84 ~gv~~Lglh~GaYGAEivRGA~~sv~~~Q~EAc~ALNftrfq~~rrI~LPQAl~~mmp~fgNlaIElLK~tslVSLIsla 163 (216)
T TIGR03004 84 VGVLALGLHVGAYGAEIVRGAVKSVSKEQLEACIALNFTRFQALRRIVLPQALVEMMPAFGNLAIELLKLTSLVSLISLA 163 (216)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999997326501688888899743658999998415367799876326799974386615899999878999999998
Q ss_pred CCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 644223783799999997349798999999999999999999721578999876
Q gi|255764497|r 531 HIHLRTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFLWHPLYLYGTRC 584 (587)
Q Consensus 531 ~~~~~~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~r 584 (587)
|.....+ .+ ..+++|+-.+++-++.+..+.-.+-.+..|+|+++.+|-
T Consensus 164 DltF~Aq----~~--r~~T~~tl~~fa~~LL~YFvMa~~i~l~~R~lEr~v~RG 211 (216)
T TIGR03004 164 DLTFRAQ----SV--RALTLDTLKVFALILLLYFVMALIISLAMRVLERRVARG 211 (216)
T ss_pred HHHHHHH----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 6769999----99--984100279999999999999999999999886664067
No 140
>TIGR02790 nickel_nikC nickel ABC transporter, permease subunit NikC; InterPro: IPR014157 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases..
Probab=99.03 E-value=8.2e-08 Score=73.11 Aligned_cols=195 Identities=15% Similarity=0.146 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 006889999999999999999997310000112454366-7899985446677544469999999998315566504799
Q gi|255764497|r 374 QDVLYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRP-HISSKIQPFAQLLAAFPANVFFPLVVSCVSYYHLNPNLWL 452 (587)
Q Consensus 374 ~~~~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~ 452 (587)
...+.+......|+..+...+.....+|+.+|...|+.. +.++.++.+.+..-+.|..++.-..+-.+|.+..+-..+.
T Consensus 52 CI~SRl~~G~R~SLg~al~~l~~~~~iG~~iG~~aGy~GG~vD~~~MR~~D~~lsfPt~~L~L~ivG~lG~Gl~nviiA~ 131 (258)
T TIGR02790 52 CIFSRLLFGARVSLGLALLVLGLVLVIGVLIGLIAGYIGGRVDEVIMRVCDVFLSFPTIVLALAIVGLLGPGLENVIIAL 131 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 47999999999999999999999999999999985301540200025547588755789999999857434799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999999999999739989999999749887899899985745778999999999999999999998505564
Q gi|255764497|r 453 SLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGHI 532 (587)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~~~ 532 (587)
+...... +-=++|+..=.+|| +|..++||..|+|.||.++|-.+|.+.|.++-=..+-.+..+.....--|+|=|-
T Consensus 132 vl~~Wa~-YAR~vRg~v~Slk~--~~fvlaar~~g~s~~~ii~rHi~~~i~~~iiVLaTLeiG~~il~ia~LSFLGLGi- 207 (258)
T TIGR02790 132 VLVQWAW-YARMVRGMVVSLKQ--KEFVLAARASGASHWQIIRRHILPNILSPIIVLATLEIGHVILHIAALSFLGLGI- 207 (258)
T ss_pred HHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHHHCCCCCEEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-
T ss_conf 9975478-99999999999986--8899999997589844504211321014799999689999999998766742378-
Q ss_pred CCCCCCHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHH
Q ss_conf 42237837999999973497--98999999999999999999
Q gi|255764497|r 533 HLRTTGLGAYIAESTEKGSF--PEVVLGVLIMCCFVLALNRF 572 (587)
Q Consensus 533 ~~~~~GlG~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l 572 (587)
+.-+.==|.++.|+.+.-.+ .+++.--+.+-+.|.++|.+
T Consensus 208 QPPtPEWG~Ml~eak~y~~t~P~lmiyPG~ail~~V~~FNll 249 (258)
T TIGR02790 208 QPPTPEWGIMLSEAKEYLRTQPELMIYPGLAILITVMAFNLL 249 (258)
T ss_pred CCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 987834564688768988627178888659999999999733
No 141
>TIGR02789 nickel_nikB nickel ABC transporter, permease subunit NikB; InterPro: IPR014156 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases..
Probab=99.00 E-value=2e-08 Score=77.55 Aligned_cols=189 Identities=20% Similarity=0.125 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCHHHHH
Q ss_conf 9999999999999999999999999999715--0267899999999974328999999999984---0145542104799
Q gi|255764497|r 63 QYASRTTLRMLSAMVISLLFTFVYATLAAKS--RRLGMVLVPILDIMQSIPILGFLTFTVVYFM---NLYPGKVIGAELA 137 (587)
Q Consensus 63 ~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~--~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~---~~~~~~~~~~~~~ 137 (587)
+.+=.|+.++..+.++.++.++|+|+++|++ +.+++..+-+..+-.++|.|-.+...+..|. ...|...-|++-.
T Consensus 97 ~~LPaTl~LA~~aL~i~vlvSvPLG~LAA~~r~~~~D~~~R~~~FlG~siPnFWLA~LLv~~fsvyL~lLP~~G~gtW~H 176 (315)
T TIGR02789 97 RSLPATLELAGLALVIVVLVSVPLGILAARYRDRLPDHAVRFISFLGVSIPNFWLAFLLVFLFSVYLDLLPVEGAGTWQH 176 (315)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
T ss_conf 43538899999999999999840889998873686407899999996430568999999999999861337677873311
Q ss_pred HHHHHHHHHHHHH---HHHHHHH-HHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999853599---9999999-97299899999996288820123655526215789999999999998998999997
Q gi|255764497|r 138 AIFAIFTSQVWNM---TFSMYQS-LCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMI 213 (587)
Q Consensus 138 ~i~~~~~~~~~~i---~~~~~~~-l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~ 213 (587)
.+.=....+++.+ .+..+++ +++..+.+..=||.=|-++.++.+|..||.+.-..+++.-+..+.=++...+.|.+
T Consensus 177 lvLP~~tlal~~~a~y~RLLRaS~Ld~~qe~yv~yAR~RGi~~~~v~~~H~Lrna~~p~iTA~GM~~g~Ll~GT~viE~i 256 (315)
T TIGR02789 177 LVLPAVTLALMSVAIYARLLRASMLDNLQERYVTYARVRGIKERNVIRRHILRNAILPMITALGMHIGELLGGTLVIENI 256 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 33888999999999999999999998628870730110264657768863241110256776001388784071145410
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 35444203678899999986311325699999999999999999
Q gi|255764497|r 214 VVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQ 257 (587)
Q Consensus 214 g~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 257 (587)
+..+|+|.+..++..+.|++-.=.-++.+..+.++++.
T Consensus 257 ------FswPG~GRy~i~AifNRDyPviQcy~Ll~~~lfv~cNL 294 (315)
T TIGR02789 257 ------FSWPGVGRYAISAIFNRDYPVIQCYTLLMALLFVLCNL 294 (315)
T ss_pred ------CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf ------12666104574335623763899999999999999999
No 142
>TIGR03003 ectoine_ehuD ectoine/hydroxyectoine ABC transporter, permease protein EhuD; InterPro: IPR014341 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Members of this entry are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain other genes of the ABC transporter and are typically found next to either ectoine utilization or ectoine biosynthesis operons..
Probab=98.99 E-value=4e-08 Score=75.41 Aligned_cols=150 Identities=19% Similarity=0.119 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 8999999999999999999731000011245436-678999854466775444699999999983155665047999999
Q gi|255764497|r 378 YVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFR-PHISSKIQPFAQLLAAFPANVFFPLVVSCVSYYHLNPNLWLSLLM 456 (587)
Q Consensus 378 ~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (587)
.++.....|+..+..|+.+|.++|+..+...... +...+......++++..|-.+=..+..-.++..+.......+=++
T Consensus 18 ~l~~gl~~Ti~atalGfaiA~VlGLvfAilRrsa~~~Iswp~~~vvEFiR~TPLLvQlyFlyYVLP~~Gi~LpA~~~Gvl 97 (218)
T TIGR03003 18 ELLEGLKVTIKATALGFAIALVLGLVFAILRRSARKLISWPTAVVVEFIRDTPLLVQLYFLYYVLPDYGISLPALLVGVL 97 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHEEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 99999999999999999999999999988752156310100100465205680899999999883023331379999899
Q ss_pred HHHH--HHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Q ss_conf 9999--99999999999973998999999974988789989998574577899999999999999------99999985
Q gi|255764497|r 457 IFGT--QWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWN------ASIVSEVA 527 (587)
Q Consensus 457 ~~~~--~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~------~~~~ae~~ 527 (587)
.++- --|...-=++|+++||+...||++.+..|+.|+.|+|.+|++.|-++-.+-.-..--+| +.++-|++
T Consensus 98 glGlhYa~Y~aEVYR~G~eaVprGQWEAa~AlNlt~~~tyr~iIlPQAippi~Pa~gNYLvAM~KeTPvLSaiTVlE~M 176 (218)
T TIGR03003 98 GLGLHYAAYAAEVYRAGLEAVPRGQWEAATALNLTARQTYRDIILPQAIPPIVPALGNYLVAMLKETPVLSAITVLELM 176 (218)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9888899888888863102588761689998523354457651022210011004578999997327446889999999
No 143
>TIGR01097 3A0109s02M phosphonate ABC transporter, permease protein; InterPro: IPR005769 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown , that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices. These proteins represent a family of phosphonate uptake transporters., probably responsible for the transport of phosphonate across the inner membrane. ; GO: 0015604 phosphonate transmembrane transporter activity, 0015716 phosphonate transport, 0005887 integral to plasma membrane.
Probab=98.99 E-value=8.7e-08 Score=72.92 Aligned_cols=182 Identities=15% Similarity=0.137 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHH----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 999999999999999973100001124543----6678999854466775444699999999983155665047999999
Q gi|255764497|r 381 WLGCITMFRVVVLIIIASIIWIPVGIWIGF----RPHISSKIQPFAQLLAAFPANVFFPLVVSCVSYYHLNPNLWLSLLM 456 (587)
Q Consensus 381 ~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (587)
..+..|+.-++-++.+++..+++++..... ++|.+...+...+.++++|-.++..+++...+.++.+ ....+.++
T Consensus 3 ~~M~~T~~IA~~~T~~~V~l~~~l~ll~A~NL~Pn~W~~~~VRRLM~~~RA~~E~V~A~lF~~~~~LGP~~-~~~A~~IH 81 (192)
T TIGR01097 3 TKMLVTLNIAVFSTILAVVLSIILGLLAAKNLVPNPWVRQIVRRLMDILRAINEVVIAGLFLVILSLGPIA-AVLALFIH 81 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHH
T ss_conf 68999999999999999999999999867525888421047899999997767999999999999505189-99999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999999999999997399899999997498878998999857457789999999999999999999985055644223
Q gi|255764497|r 457 IFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGHIHLRT 536 (587)
Q Consensus 457 ~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~~~~~~~ 536 (587)
..+.+ -.-..+.++++|+.=+|--|..|||+....+.=.+|+.+|.+.+=.++-+-...++.++.-++|+|
T Consensus 82 T~G~L---~KLl~E~VE~~~~~P~EG~RA~GAN~~E~~~yG~~PQVlP~l~SY~L~RlE~NVR~~T~~G~VG~G------ 152 (192)
T TIGR01097 82 TIGVL---SKLLFEVVEAIDMKPVEGLRAVGANKLERVLYGVLPQVLPLLISYFLLRLEINVRAATVVGAVGAG------ 152 (192)
T ss_pred HHHHH---HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC------
T ss_conf 99899---999999986158989766523330378899960102676889999999998865555653044787------
Q ss_pred CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7837999999973497989999999999999999997
Q gi|255764497|r 537 TGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFL 573 (587)
Q Consensus 537 ~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 573 (587)
|+|..+..+-..++..+..|-++.+...+-++|.+=
T Consensus 153 -GIG~~L~~~I~~~~~~~T~A~~~L~~~T~~~~D~lS 188 (192)
T TIGR01097 153 -GIGVLLRLAIRQFQEAKTLALVLLLIVTVFLLDFLS 188 (192)
T ss_pred -CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -276899998603306889999999999999999987
No 144
>COG4209 LplB ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]
Probab=98.96 E-value=1.2e-07 Score=72.05 Aligned_cols=103 Identities=19% Similarity=0.137 Sum_probs=73.7
Q ss_pred HHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCHHHHHHH-H
Q ss_conf 999973998999999974988789989998574577899999999999999999999850556442-23783799999-9
Q gi|255764497|r 469 IAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGHIHL-RTTGLGAYIAE-S 546 (587)
Q Consensus 469 ~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~~~~~-~~~GlG~~i~~-~ 546 (587)
.|++..||+++.|||+.+|||+||..|+|++|.++|-+.-=.+.+.+.-++.---..+.-..+... .+.-+-.++++ .
T Consensus 190 lAai~~Idpt~YEAA~vDGA~rwqqiwhITlP~i~P~ivIllIL~iG~i~~~gFe~~yll~~~~~~~v~~vldtYVy~~g 269 (309)
T COG4209 190 LAAIAGIDPTLYEAAMVDGASRWQQIWHITLPAIRPLIVILLILNIGNIFNAGFELFYLLPNPSGYDVTEVLDTYVYRGG 269 (309)
T ss_pred HHHHHCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCCCHHHHHHHHHHHHC
T ss_conf 99997279999999980548877888821103231499999999852376537256066057668748989999999810
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9734979899999999999999999
Q gi|255764497|r 547 TEKGSFPEVVLGVLIMCCFVLALNR 571 (587)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (587)
.+.||+....|+.+-=++++..+-.
T Consensus 270 l~~Gd~s~sTAaGlf~svVg~iLl~ 294 (309)
T COG4209 270 LVTGDYSYSTAAGLFQSVVGFILLF 294 (309)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 1357511899999999999999999
No 145
>TIGR03003 ectoine_ehuD ectoine/hydroxyectoine ABC transporter, permease protein EhuD; InterPro: IPR014341 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Members of this entry are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain other genes of the ABC transporter and are typically found next to either ectoine utilization or ectoine biosynthesis operons..
Probab=98.89 E-value=2.8e-07 Score=69.31 Aligned_cols=138 Identities=17% Similarity=0.214 Sum_probs=106.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 406899999999999999999999999999999-7150267899999999974328999999999984014554210479
Q gi|255764497|r 58 VHSLPQYASRTTLRMLSAMVISLLFTFVYATLA-AKSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVIGAEL 136 (587)
Q Consensus 58 ~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~-~~~~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~~~~~~~ 136 (587)
.+.+.+.+.+|+.....|+.++.++|..+|++- .+.+...+..--...+++.-|-++-..+...... .. +-.+....
T Consensus 16 lP~l~~gl~~Ti~atalGfaiA~VlGLvfAilRrsa~~~Iswp~~~vvEFiR~TPLLvQlyFlyYVLP-~~-Gi~LpA~~ 93 (218)
T TIGR03003 16 LPELLEGLKVTIKATALGFAIALVLGLVFAILRRSARKLISWPTAVVVEFIRDTPLLVQLYFLYYVLP-DY-GISLPALL 93 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHEEEEEEECCCCHHHHHHHHHHHHH-CC-CCCHHHHH
T ss_conf 99999999999999999999999999999887521563101001004652056808999999998830-23-33137999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999985359999999999729989999999628882012365552621578999999
Q gi|255764497|r 137 AAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMM 197 (587)
Q Consensus 137 ~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~ 197 (587)
..+..++++.--|..=-.++|++++|+..-||++.+..|+.|++++|.+|++.|.++-++-
T Consensus 94 ~GvlglGlhYa~Y~aEVYR~G~eaVprGQWEAa~AlNlt~~~tyr~iIlPQAippi~Pa~g 154 (218)
T TIGR03003 94 VGVLGLGLHYAAYAAEVYRAGLEAVPRGQWEAATALNLTARQTYRDIILPQAIPPIVPALG 154 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 9899988889988888886310258876168999852335445765102221001100457
No 146
>COG4160 ArtM ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism]
Probab=98.86 E-value=6.2e-08 Score=73.99 Aligned_cols=133 Identities=16% Similarity=0.161 Sum_probs=102.3
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH-
Q ss_conf 074068999999999999999999999999999997-150267899999999974328999999999984014554210-
Q gi|255764497|r 56 LDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAA-KSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVIG- 133 (587)
Q Consensus 56 ~~~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~-~~~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~~~~- 133 (587)
...+.+.+-+..|+.+.+.+.+++.++++|+++.-. ++++.+...+..+.+.+.-|-++-. ++...|.+.......
T Consensus 8 ~~~p~~l~Gl~~TL~Ll~~S~~iG~~LAvpla~~r~s~~~~v~~~a~~y~~~fRGTPLLvQl--fLiYyGlgqf~~ir~s 85 (228)
T COG4160 8 EYLPRLLSGLATTLWLLIISLVIGFVLALPLALARVSKNRWVSWPARAYTYVFRGTPLLVQL--FLIYYGLGQFEWIRES 85 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHEEEEEECCCHHHHHH--HHHHHCCCCCHHHHHH
T ss_conf 98799973199999999999999999999999999728850011125014565387499999--9999464314688840
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf ---------479999999998535999999999972998999999962888201236555262157
Q gi|255764497|r 134 ---------AELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMP 190 (587)
Q Consensus 134 ---------~~~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P 190 (587)
.+.-.+++..++..-+..-..+.+++++|+...|+|+.+|.|++|+|+||.+|.++-
T Consensus 86 ~~lW~~lr~~w~Ca~lAltLNtaAY~~Ei~rGAi~avP~Gq~Eaa~AlGmsr~~~~r~IiLP~Alr 151 (228)
T COG4160 86 IFLWPFLREAWFCAVLALTLNTAAYTTEIFRGAIRAVPRGQWEAARALGMSRFKTLRRIILPSALR 151 (228)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 665899825288999999997799999999889852894178999981962999999999779999
No 147
>COG4160 ArtM ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism]
Probab=98.83 E-value=1.8e-07 Score=70.71 Aligned_cols=128 Identities=15% Similarity=0.182 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------
Q ss_conf 68899999999999999999973100001124543-6678999854466775444699999999983155----------
Q gi|255764497|r 376 VLYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGF-RPHISSKIQPFAQLLAAFPANVFFPLVVSCVSYY---------- 444 (587)
Q Consensus 376 ~~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~---------- 444 (587)
..........|+.....+.+++.++++|++..... ++.......-.....+..|-.+=+.+..--.+..
T Consensus 10 ~p~~l~Gl~~TL~Ll~~S~~iG~~LAvpla~~r~s~~~~v~~~a~~y~~~fRGTPLLvQlfLiYyGlgqf~~ir~s~~lW 89 (228)
T COG4160 10 LPRLLSGLATTLWLLIISLVIGFVLALPLALARVSKNRWVSWPARAYTYVFRGTPLLVQLFLIYYGLGQFEWIRESIFLW 89 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHEEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 79997319999999999999999999999999972885001112501456538749999999994643146888406658
Q ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf --66504799999999999999999999997399899999997498878998999857457
Q gi|255764497|r 445 --HLNPNLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIF 503 (587)
Q Consensus 445 --~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~ 503 (587)
.-......+....+++--|...-...+++++|+...|||+.+|.|++|++|||.+|.+.
T Consensus 90 ~~lr~~w~Ca~lAltLNtaAY~~Ei~rGAi~avP~Gq~Eaa~AlGmsr~~~~r~IiLP~Al 150 (228)
T COG4160 90 PFLREAWFCAVLALTLNTAAYTTEIFRGAIRAVPRGQWEAARALGMSRFKTLRRIILPSAL 150 (228)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 9982528899999999779999999988985289417899998196299999999977999
No 148
>COG4171 SapC ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=98.83 E-value=7.7e-07 Score=66.07 Aligned_cols=162 Identities=19% Similarity=0.213 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 999999999999999999999999997150267-8999999999743289999999999840145542104799999999
Q gi|255764497|r 65 ASRTTLRMLSAMVISLLFTFVYATLAAKSRRLG-MVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVIGAELAAIFAIF 143 (587)
Q Consensus 65 ~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~~~-~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~~~~~~~~~i~~~~ 143 (587)
+..|+.-++.+++.+.++|..+|++++.++-.+ +.+..+++.+.++|++-.+.+...+.+++ ..-+.+++.
T Consensus 95 t~~t~G~allvt~~a~l~g~~lGi~AG~t~gl~s~~lnHilDt~lSiPsLLlAiivvaf~gps--------l~namfA~~ 166 (296)
T COG4171 95 TAPTVGGALLVTLAATICGGVLGIFAGATHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPS--------LSNAMFAVW 166 (296)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--------HHHHHHHHH
T ss_conf 752341399999999999999999997777789999999999997358999999999960832--------888999999
Q ss_pred HHHHHHHHHHHHHHHHH-CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 98535999999999972-99899999996288820123655526215789999999999998998999997354442036
Q gi|255764497|r 144 TSQVWNMTFSMYQSLCN-IPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPL 222 (587)
Q Consensus 144 ~~~~~~i~~~~~~~l~~-i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~ 222 (587)
+...|++....|.+.++ .++|+.-++|..|+|....+|+..+|...+.++.-...++..+.-|..+-..++-|++.. .
T Consensus 167 LAllPrfirsiY~avh~EleKeYViaarLdGas~~~lL~~~IlPNI~~~~v~EitrAlsiAiLDI~ALgFl~LGAQ~P-s 245 (296)
T COG4171 167 LALLPRFIRSIYSAVHDELEKEYVIAARLDGASTLNLLWFAILPNITAILVTEITRALSIAILDIAALGFLDLGAQLP-S 245 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-C
T ss_conf 999999999999999999887787776526766188999997251279999999999999999888861331257799-9
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 7889999998631
Q gi|255764497|r 223 PGIGSYIALAIKE 235 (587)
Q Consensus 223 ~g~g~~~~~~~~~ 235 (587)
+.=|..+.++..-
T Consensus 246 pEWGAMlgDsleL 258 (296)
T COG4171 246 PEWGAMLGDSLEL 258 (296)
T ss_pred CHHHHHHCCCCCE
T ss_conf 4677774261032
No 149
>COG4168 SapB ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=98.80 E-value=5.8e-07 Score=66.94 Aligned_cols=193 Identities=16% Similarity=0.172 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------CCC
Q ss_conf 899999999999999999999999999999715--02678999999999743289999999999840145-------542
Q gi|255764497|r 61 LPQYASRTTLRMLSAMVISLLFTFVYATLAAKS--RRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYP-------GKV 131 (587)
Q Consensus 61 l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~--~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~-------~~~ 131 (587)
+.+..=.|+-+++.++.+++++|+|+|..++.. ++.++.+..+-.+-.++|.+-.++..+.++..... -+.
T Consensus 70 l~~vfPaT~ELC~~af~lal~~GiPlG~iagv~~~kw~d~~i~~is~~G~SiPvFWlAl~ll~f~slh~~~~pv~GrydL 149 (321)
T COG4168 70 LLEVFPATMELCFLAFGLALIVGIPLGMIAGVTRHKWLDKLISAISLLGFSIPVFWLALLLLLFFSLHLGWLPVSGRYDL 149 (321)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEECCCCEEE
T ss_conf 99866618999999999999984647988775423078899999998546745999999999999975141103431014
Q ss_pred CH--------------------H--------HHHHHHHHHHHHHHHH--HHHHHHH-HHHCCHHHHHHHHHCCCCCHHHH
Q ss_conf 10--------------------4--------7999999999853599--9999999-97299899999996288820123
Q gi|255764497|r 132 IG--------------------A--------ELAAIFAIFTSQVWNM--TFSMYQS-LCNIPRDLEEVSRSFRLSGWQKF 180 (587)
Q Consensus 132 ~~--------------------~--------~~~~i~~~~~~~~~~i--~~~~~~~-l~~i~~~l~eaa~~~Ga~~~~~f 180 (587)
+| . .+....+.++...|.+ ...++++ -+-.++.+..+|.+-|-|+||..
T Consensus 150 LY~ikpiTGfalIDawls~spyRt~~iqs~lqHl~LP~lvL~iaPTtevir~mr~s~~~Vl~qNyikaA~trGlS~~~Il 229 (321)
T COG4168 150 LYEIKPITGFALIDAWLSDSPYRTEMIQSAIQHLILPTLVLSVAPTTEVIRLMRQSTEEVLNQNYIKAAATRGLSRFTIL 229 (321)
T ss_pred EEEECCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 56504546627788986377057899999999988889999973479999999998999974248999996560355899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6555262157899999999999989989999973544420367889999998631132569999999999999999999
Q gi|255764497|r 181 WYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQLL 259 (587)
Q Consensus 181 ~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 259 (587)
+|.++-.+.|.++.-.-..|..-+.--+..|+.= +-+|+|....++.++.|+....++..++..+++..|.+.
T Consensus 230 r~hVlrNalPplIPq~g~qfs~mLTlamitEs~f------~WPGiGRWLinAi~qqDy~sIsaGViViG~lviivnvls 302 (321)
T COG4168 230 RRHVLRNALPPLIPQLGLQFSTMLTLAMITESVF------GWPGIGRWLINAIRQQDYASISAGVIVIGSLVIIVNVLS 302 (321)
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHCCHHHHHCCEEEEEEEEEEHHHHH
T ss_conf 9999850478544413679999999999999982------897525999999876006766356279866544188889
No 150
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=98.78 E-value=2.5e-08 Score=76.84 Aligned_cols=121 Identities=20% Similarity=0.225 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 99999999999973998999999974988789989998574577899999999999999999999850556442237837
Q gi|255764497|r 461 QWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGHIHLRTTGLG 540 (587)
Q Consensus 461 ~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~~~~~~~~GlG 540 (587)
+|.++--...++-++|+++.+-+-.+||++||++.+|++|.+.|+|+++...+++.+..+..+ .++.+||+.. ++
T Consensus 596 IP~IFsiAEDAiFSVP~sLs~GSLALGATPWQTL~~VVlltAspGIFSAiMiG~GRAVGETMI-VLMATGNtP~----~~ 670 (733)
T COG4590 596 IPTIFSIAEDAIFSVPKSLSDGSLALGATPWQTLIYVVLLTASPGIFSAIMIGLGRAVGETMI-VLMATGNTPL----LD 670 (733)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHEEEEEECCCCCHHHHHHHHHHHHHCCCEEE-EEEECCCCCC----CC
T ss_conf 203453422443247854466730136871454014575046841889999751111062589-9972389852----12
Q ss_pred HHHHHHHHHCC------HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999997349------79899-----999999999999999972157899987633
Q gi|255764497|r 541 AYIAESTEKGS------FPEVV-----LGVLIMCCFVLALNRFLWHPLYLYGTRCLR 586 (587)
Q Consensus 541 ~~i~~~~~~~~------~~~~~-----~~~~~~~~~~~~~~~l~~~~l~~~~~~r~~ 586 (587)
.-|+++..... ++..- .-++.+..+++.+--+.-.-|..++++|.|
T Consensus 671 ~nIFeGmRtlaAniAvEmPEseVgs~HyRvLFL~ALvLltFTF~vNtLAE~vRqRLR 727 (733)
T COG4590 671 WNIFEGMRTLAANIAVEMPESEVGSAHYRVLFLAALVLLTFTFAVNTLAEWVRQRLR 727 (733)
T ss_pred CCHHHHHHHHHHHHHHCCCHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 228777888765521217654406633426899999999999999899999999999
No 151
>COG4239 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=98.66 E-value=5e-05 Score=52.93 Aligned_cols=156 Identities=15% Similarity=0.139 Sum_probs=87.5
Q ss_pred HHHHHHHCCCCCHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---HHHHHHHHHH
Q ss_conf 9997310000112454366-78999854466775444699999999983155665047999999999---9999999999
Q gi|255764497|r 394 IIIASIIWIPVGIWIGFRP-HISSKIQPFAQLLAAFPANVFFPLVVSCVSYYHLNPNLWLSLLMIFG---TQWYILFNVI 469 (587)
Q Consensus 394 ~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 469 (587)
+.++.++|+..|-..+.+. +..-......+..+++|..-+.....-.+..+ .+....+..+. .+-.++| .
T Consensus 151 T~~SaliGv~~GA~qGyfgg~vdL~~QRfIEvws~mP~lyllii~as~~~p~----f~~ll~i~llf~Wm~lv~vvR--a 224 (341)
T COG4239 151 TLISALIGVLAGALQGYFGGWVDLLGQRFIEVWSGMPTLYLLIILASIFQPN----FWWLLGIMLLFGWMSLVGVVR--A 224 (341)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHHHHHH--H
T ss_conf 9999999998887753413004887705999984472999999999996854----799999999999999999999--9
Q ss_pred HHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99973998999999974988789989998574577899999999999999999999850556442237837999999973
Q gi|255764497|r 470 AGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGHIHLRTTGLGAYIAESTEK 549 (587)
Q Consensus 470 ~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~~~~~~~~GlG~~i~~~~~~ 549 (587)
+-++.-+-|+..|||.+|.+..+++++-.+|-++-+.+|=+=+-.+.+..++..-.|++-|....+. .+|-++.++.++
T Consensus 225 efLr~Rn~dYvkAArAlGv~d~~Ii~rHilPnamvatlTflPf~l~~sitTltsLdFLgfglp~gsp-SLGELl~qgk~n 303 (341)
T COG4239 225 EFLRARNLDYVKAARALGVSDRRIILRHILPNAMVATLTFLPFILSGSITTLTSLDFLGFGLPPGSP-SLGELLNQGKNN 303 (341)
T ss_pred HHHHHCCHHHHHHHHHCCCCCCEEEHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCC-CHHHHHHHHHHC
T ss_conf 9998602688999997398865030213262988999998789870633230016665269999996-789999976524
Q ss_pred CCHHHHH
Q ss_conf 4979899
Q gi|255764497|r 550 GSFPEVV 556 (587)
Q Consensus 550 ~~~~~~~ 556 (587)
.+.+=+.
T Consensus 304 lqapWlg 310 (341)
T COG4239 304 LQAPWLG 310 (341)
T ss_pred CCCCHHH
T ss_conf 7784255
No 152
>COG4239 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=98.49 E-value=0.00012 Score=50.21 Aligned_cols=182 Identities=14% Similarity=0.121 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 9999999999999999999999999997150-267899999999974328999999999984014554210479999999
Q gi|255764497|r 64 YASRTTLRMLSAMVISLLFTFVYATLAAKSR-RLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVIGAELAAIFAI 142 (587)
Q Consensus 64 ~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~-~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~~~~~~~~~i~~~ 142 (587)
-.-+|+.-++.-+++|.++|+..|-..+++. +.+-..+..+.+.+++|.+-...+.-..|..+. .....+
T Consensus 139 gfRiSvLfgL~lT~~SaliGv~~GA~qGyfgg~vdL~~QRfIEvws~mP~lyllii~as~~~p~f---------~~ll~i 209 (341)
T COG4239 139 GFRISVLFGLSLTLISALIGVLAGALQGYFGGWVDLLGQRFIEVWSGMPTLYLLIILASIFQPNF---------WWLLGI 209 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCH---------HHHHHH
T ss_conf 99999999999999999999988877534130048877059999844729999999999968547---------999999
Q ss_pred HHHHHHHH--HHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 99853599--9999999972998999999962888201236555262157899999999999989989999973544420
Q gi|255764497|r 143 FTSQVWNM--TFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVI 220 (587)
Q Consensus 143 ~~~~~~~i--~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~~~~~~ 220 (587)
....-|.- ...-.+-+|.-+-|+..|||.+|.+..+..++..+|.++-+..+=+=.-...+...+..-..+|.| ...
T Consensus 210 ~llf~Wm~lv~vvRaefLr~Rn~dYvkAArAlGv~d~~Ii~rHilPnamvatlTflPf~l~~sitTltsLdFLgfg-lp~ 288 (341)
T COG4239 210 MLLFGWMSLVGVVRAEFLRARNLDYVKAARALGVSDRRIILRHILPNAMVATLTFLPFILSGSITTLTSLDFLGFG-LPP 288 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC-CCC
T ss_conf 9999999999999999998602688999997398865030213262988999998789870633230016665269-999
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 36788999999863113256999999999999999
Q gi|255764497|r 221 PLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLY 255 (587)
Q Consensus 221 ~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 255 (587)
+.+-+|..+.+..++.+..-......+++.+...+
T Consensus 289 gspSLGELl~qgk~nlqapWlgit~fv~l~~~lsl 323 (341)
T COG4239 289 GSPSLGELLNQGKNNLQAPWLGITAFVVLSLLLSL 323 (341)
T ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99678999997652477842558899999999999
No 153
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=98.40 E-value=1.2e-07 Score=71.85 Aligned_cols=173 Identities=16% Similarity=0.205 Sum_probs=126.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
Q ss_conf 406899999999999999999999999999999715--02678999999999743289999999999840----------
Q gi|255764497|r 58 VHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKS--RRLGMVLVPILDIMQSIPILGFLTFTVVYFMN---------- 125 (587)
Q Consensus 58 ~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~--~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~---------- 125 (587)
..++.-.+..|+.-++.+++++..+++.-|+..++. +--||.++|.+.++.+.|..+...++=.|+.+
T Consensus 425 KfSL~Pi~FGTLKAA~yAMlfA~PlAvagAiYTAYFM~p~mRRvVKPtIElMeAlPTViiGf~AGlwlAP~vE~hLpgvl 504 (733)
T COG4590 425 KFSLVPIAFGTLKAAAYAMLFAMPLAVAGAIYTAYFMTPSMRRVVKPTIELMEALPTVIIGFLAGLWLAPFVESHLPGVL 504 (733)
T ss_pred CEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 32340000446899999999985899998999999537756411000899975331889999887766677764336999
Q ss_pred ---------------CC-----------CC-------------------------------CCCH-------------HH
Q ss_conf ---------------14-----------55-------------------------------4210-------------47
Q gi|255764497|r 126 ---------------LY-----------PG-------------------------------KVIG-------------AE 135 (587)
Q Consensus 126 ---------------~~-----------~~-------------------------------~~~~-------------~~ 135 (587)
+. +. +.+- ..
T Consensus 505 ~L~lLlpl~ill~G~~wsRLp~~~~~~lPaGW~a~iLiPV~l~~galaLwlsp~Le~~~fggdlr~wL~~d~~~YDQRNA 584 (733)
T COG4590 505 ALMLLLPLSILLLGFIWSRLPKAWLRRLPAGWHALILIPVLLGIGALALWLSPELENALFGGDLRVWLAQDGIGYDQRNA 584 (733)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHCCCCCCCCCCC
T ss_conf 99998678999997777645087735698762346888999998799987174766667266377686524777232444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999985359999999999729989999999628882012365552621578999999999999899899999735
Q gi|255764497|r 136 LAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVV 215 (587)
Q Consensus 136 ~~~i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~ 215 (587)
..+-++|.+...|.++-..-+++-++|+++-+-+-.+||++||++.+|++|.+-|+|++++++.++.+.++-++..|-.+
T Consensus 585 LvVG~AMGFAvIP~IFsiAEDAiFSVP~sLs~GSLALGATPWQTL~~VVlltAspGIFSAiMiG~GRAVGETMIVLMATG 664 (733)
T COG4590 585 LVVGFAMGFAVIPTIFSIAEDAIFSVPKSLSDGSLALGATPWQTLIYVVLLTASPGIFSAIMIGLGRAVGETMIVLMATG 664 (733)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 23342000222203453422443247854466730136871454014575046841889999751111062589997238
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q ss_conf 44420367889999998631
Q gi|255764497|r 216 GDTVIPLPGIGSYIALAIKE 235 (587)
Q Consensus 216 ~~~~~~~~g~g~~~~~~~~~ 235 (587)
++ +-++..+.+.+..
T Consensus 665 Nt-----P~~~~nIFeGmRt 679 (733)
T COG4590 665 NT-----PLLDWNIFEGMRT 679 (733)
T ss_pred CC-----CCCCCCHHHHHHH
T ss_conf 98-----5212228777888
No 154
>TIGR02789 nickel_nikB nickel ABC transporter, permease subunit NikB; InterPro: IPR014156 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases..
Probab=98.40 E-value=0.00013 Score=49.86 Aligned_cols=206 Identities=15% Similarity=0.055 Sum_probs=158.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------C
Q ss_conf 00006889999999999999999997310000112454366--78999854466775444699999999983-------1
Q gi|255764497|r 372 TYQDVLYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRP--HISSKIQPFAQLLAAFPANVFFPLVVSCV-------S 442 (587)
Q Consensus 372 ~~~~~~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ip~~~~~~~~~~~~-------~ 442 (587)
...-++.+...+-.|+..+..++++.+.+.+|+|.++++.+ ..++..+.+.....++|..=+...++..| +
T Consensus 88 ~rpV~De~~~~LPaTl~LA~~aL~i~vlvSvPLG~LAA~~r~~~~D~~~R~~~FlG~siPnFWLA~LLv~~fsvyL~lLP 167 (315)
T TIGR02789 88 DRPVLDEVARSLPATLELAGLALVIVVLVSVPLGILAARYRDRLPDHAVRFISFLGVSIPNFWLAFLLVFLFSVYLDLLP 167 (315)
T ss_pred CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 89508889743538899999999999999840889998873686407899999996430568999999999999861337
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH---HHH-HHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55665047999999999999999999---999-97399899999997498878998999857457789999999999999
Q gi|255764497|r 443 YYHLNPNLWLSLLMIFGTQWYILFNV---IAG-ASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAW 518 (587)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g-l~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~ 518 (587)
..+.++..=.+.-.+..+++++..++ +++ +++..+++..=||.=|.++.++.+|-+||-+.-..+||.=...+.=.
T Consensus 168 ~~G~gtW~HlvLP~~tlal~~~a~y~RLLRaS~Ld~~qe~yv~yAR~RGi~~~~v~~~H~Lrna~~p~iTA~GM~~g~Ll 247 (315)
T TIGR02789 168 VEGAGTWQHLVLPAVTLALMSVAIYARLLRASMLDNLQERYVTYARVRGIKERNVIRRHILRNAILPMITALGMHIGELL 247 (315)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 67787331133888999999999999999999998628870730110264657768863241110256776001388784
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999985055644223783799999997349798999999999999999999721578999876
Q gi|255764497|r 519 NASIVSEVASWGHIHLRTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFLWHPLYLYGTRC 584 (587)
Q Consensus 519 ~~~~~ae~~~~~~~~~~~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~r 584 (587)
.+..+.|-+ .+=.|+|.+-.+|-=+.|++-+=..++.++.+-+.+|-++ .=++.+...|
T Consensus 248 ~GT~viE~i------FswPG~GRy~i~AifNRDyPviQcy~Ll~~~lfv~cNLiv-D~~~a~lDPR 306 (315)
T TIGR02789 248 GGTLVIENI------FSWPGVGRYAISAIFNRDYPVIQCYTLLMALLFVLCNLIV-DLLQALLDPR 306 (315)
T ss_pred HCCEEEEEE------CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCC
T ss_conf 071145410------1266610457433562376389999999999999999999-9999851876
No 155
>COG4171 SapC ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=98.28 E-value=9.4e-05 Score=50.92 Aligned_cols=160 Identities=16% Similarity=0.106 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999999999999731000011245436678-9998544667754446999999999831556650479999999999999
Q gi|255764497|r 385 ITMFRVVVLIIIASIIWIPVGIWIGFRPHI-SSKIQPFAQLLAAFPANVFFPLVVSCVSYYHLNPNLWLSLLMIFGTQWY 463 (587)
Q Consensus 385 ~tl~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (587)
.|+..+++.+..+..+|..+|...+..+.. .+.+..+.+.+.++|..........+.+.. ..-..+...+.-+|+
T Consensus 97 ~t~G~allvt~~a~l~g~~lGi~AG~t~gl~s~~lnHilDt~lSiPsLLlAiivvaf~gps----l~namfA~~LAllPr 172 (296)
T COG4171 97 PTVGGALLVTLAATICGGVLGIFAGATHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPS----LSNAMFAVWLALLPR 172 (296)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHHHH
T ss_conf 2341399999999999999999997777789999999999997358999999999960832----888999999999999
Q ss_pred HHHHHHHHHH-HCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 9999999997-399899999997498878998999857457789999999999999999999985055644223783799
Q gi|255764497|r 464 ILFNVIAGAS-AFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGHIHLRTTGLGAY 542 (587)
Q Consensus 464 ~~~~~~~gl~-~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~~~~~~~~GlG~~ 542 (587)
.+++++.+.+ .+++|+.-++|-.|+|....++...+|-+.+.+++-..-++..+......-.|+.-|.... +.-=|.+
T Consensus 173 firsiY~avh~EleKeYViaarLdGas~~~lL~~~IlPNI~~~~v~EitrAlsiAiLDI~ALgFl~LGAQ~P-spEWGAM 251 (296)
T COG4171 173 FIRSIYSAVHDELEKEYVIAARLDGASTLNLLWFAILPNITAILVTEITRALSIAILDIAALGFLDLGAQLP-SPEWGAM 251 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCHHHHH
T ss_conf 999999999999887787776526766188999997251279999999999999999888861331257799-9467777
Q ss_pred HHHHHHH
Q ss_conf 9999973
Q gi|255764497|r 543 IAESTEK 549 (587)
Q Consensus 543 i~~~~~~ 549 (587)
+-|+.+.
T Consensus 252 lgDsleL 258 (296)
T COG4171 252 LGDSLEL 258 (296)
T ss_pred HCCCCCE
T ss_conf 4261032
No 156
>COG4168 SapB ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=98.20 E-value=4.8e-05 Score=53.06 Aligned_cols=184 Identities=14% Similarity=0.179 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---------------
Q ss_conf 99999999999999731000011245436--6789998544667754446999999999831556---------------
Q gi|255764497|r 383 GCITMFRVVVLIIIASIIWIPVGIWIGFR--PHISSKIQPFAQLLAAFPANVFFPLVVSCVSYYH--------------- 445 (587)
Q Consensus 383 ~~~tl~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~--------------- 445 (587)
.-.|+.....++.++..+|+|+|...+.. ++.++.+......-.++|..=+.+....++..-.
T Consensus 74 fPaT~ELC~~af~lal~~GiPlG~iagv~~~kw~d~~i~~is~~G~SiPvFWlAl~ll~f~slh~~~~pv~GrydLLY~i 153 (321)
T COG4168 74 FPATMELCFLAFGLALIVGIPLGMIAGVTRHKWLDKLISAISLLGFSIPVFWLALLLLLFFSLHLGWLPVSGRYDLLYEI 153 (321)
T ss_pred CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEECCCCEEEEEEE
T ss_conf 66189999999999999846479887754230788999999985467459999999999999751411034310145650
Q ss_pred -----------------CCHHHHH------HHHHHHHHH-H--HHHHHHHH-HHHHCCHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf -----------------6504799------999999999-9--99999999-9973998999999974988789989998
Q gi|255764497|r 446 -----------------LNPNLWL------SLLMIFGTQ-W--YILFNVIA-GASAFPNDFKEVASSFHITGWRWWRYII 498 (587)
Q Consensus 446 -----------------~~~~~~~------~~~~~~~~~-~--~~~~~~~~-gl~~i~~~l~eaa~~lGa~~~~~~~~V~ 498 (587)
.-++... +....+.+. | -++|-..+ .-.-.++++..||.+-|-|+++.+||-+
T Consensus 154 kpiTGfalIDawls~spyRt~~iqs~lqHl~LP~lvL~iaPTtevir~mr~s~~~Vl~qNyikaA~trGlS~~~Ilr~hV 233 (321)
T COG4168 154 KPITGFALIDAWLSDSPYRTEMIQSAIQHLILPTLVLSVAPTTEVIRLMRQSTEEVLNQNYIKAAATRGLSRFTILRRHV 233 (321)
T ss_pred CCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 45466277889863770578999999999888899999734799999999989999742489999965603558999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 57457789999999999999999999985055644223783799999997349798999999999999999999
Q gi|255764497|r 499 LPGIFPYYVTGAITACGGAWNASIVSEVASWGHIHLRTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRF 572 (587)
Q Consensus 499 LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~~~~~~~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 572 (587)
+--+.|-++--.-.-|..-..-.+..|..- .=.|+|.-..||.+..||..+-+++++++..++..|.+
T Consensus 234 lrNalPplIPq~g~qfs~mLTlamitEs~f------~WPGiGRWLinAi~qqDy~sIsaGViViG~lviivnvl 301 (321)
T COG4168 234 LRNALPPLIPQLGLQFSTMLTLAMITESVF------GWPGIGRWLINAIRQQDYASISAGVIVIGSLVIIVNVL 301 (321)
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHCCHHHHHCCEEEEEEEEEEHHHH
T ss_conf 850478544413679999999999999982------89752599999987600676635627986654418888
No 157
>COG4597 BatB ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=98.02 E-value=0.00017 Score=49.02 Aligned_cols=79 Identities=18% Similarity=0.132 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9999999999999999973998999999974988789989998574577899999999999999999999850556442
Q gi|255764497|r 456 MIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGHIHL 534 (587)
Q Consensus 456 ~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~~~~~ 534 (587)
..+.+--++..-+++|++.+++...|||+++|.++-+++|.|+.|.++--++--+..-...--+-...|.-+|.+|...
T Consensus 273 Ls~YTaaFIAEiVRaGI~~VskGQtEAa~sLGL~~~~t~RlVivPQAlRiIIPPLTSQYLNLtKNSSLAiAIGYpDlv~ 351 (397)
T COG4597 273 LSFYTAAFIAEIVRAGIQAVSKGQTEAARSLGLRSSLTLRLVIVPQALRIIIPPLTSQYLNLTKNSSLAIAIGYPDLVA 351 (397)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCEEEEEEECCCCEEECCCCCHHHHHHCCCCHHHHCCCCCCEEE
T ss_conf 9999999999999876502576617789862899754479998411015641762188873323542320027776688
No 158
>COG4597 BatB ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=98.01 E-value=0.0015 Score=42.29 Aligned_cols=135 Identities=15% Similarity=0.139 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Q ss_conf 89999999999999999999999999999971502-67899999999974328999999999984---------------
Q gi|255764497|r 61 LPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRR-LGMVLVPILDIMQSIPILGFLTFTVVYFM--------------- 124 (587)
Q Consensus 61 l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~~~~~~-~~~~~~~~l~~~~~iP~~~~~~~~~~~f~--------------- 124 (587)
++--+.||+..++.+.+.+.++|+..|+.--.+.+ .+|.-.-...+.+-+|++--...+..-..
T Consensus 89 ~~VGllNTl~Va~~gIi~atIiGfliGIaRLS~NWLi~kl~~vYvEiFRNiPpLL~IfFWYf~Vl~~LP~ar~s~~l~~~ 168 (397)
T COG4597 89 FIVGLLNTLLVAALGIITATIIGFLIGIARLSDNWLIRKLSTVYVEIFRNIPPLLQIFFWYFGVLSVLPGARQSVSLPDL 168 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 89988989999999999999999998777723138999998999999826857999999999999528870001115630
Q ss_pred -------CCCCC--------------------------------------------------------------------
Q ss_conf -------01455--------------------------------------------------------------------
Q gi|255764497|r 125 -------NLYPG-------------------------------------------------------------------- 129 (587)
Q Consensus 125 -------~~~~~-------------------------------------------------------------------- 129 (587)
...+.
T Consensus 169 ~~L~nrG~~~p~P~~geG~~~~~lA~~~~I~~s~~~~r~ak~rQ~~TGq~~~~~~~~~~LiiglPll~~~~~G~pl~~d~ 248 (397)
T COG4597 169 IFLSNRGLYFPSPQWGEGFIAFILALVMAIVASVFLARWAKTRQIATGQQFRTWPTAAVLIIGLPLLAQWLFGAPLTFDV 248 (397)
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCEECC
T ss_conf 13525640147731036517999999999999999999988778750785762356889984508899997289721205
Q ss_pred -----------CCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf -----------421047999-999999853599999999997299899999996288820123655526215789999
Q gi|255764497|r 130 -----------KVIGAELAA-IFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWN 195 (587)
Q Consensus 130 -----------~~~~~~~~~-i~~~~~~~~~~i~~~~~~~l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~ 195 (587)
.....|... ..+...+.--++.--++.|++++++...|||+++|..+-++.+-|..|+++.-++..
T Consensus 249 P~~~~FNl~GG~~v~PEf~aL~laLs~YTaaFIAEiVRaGI~~VskGQtEAa~sLGL~~~~t~RlVivPQAlRiIIPP 326 (397)
T COG4597 249 PALGGFNLTGGMVVIPEFAALFLALSFYTAAFIAEIVRAGIQAVSKGQTEAARSLGLRSSLTLRLVIVPQALRIIIPP 326 (397)
T ss_pred CCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCEEEEEEECCCCEEECCC
T ss_conf 211443566870565789999999999999999999987650257661778986289975447999841101564176
No 159
>COG4174 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=97.52 E-value=0.00032 Score=47.08 Aligned_cols=177 Identities=16% Similarity=0.072 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHCCCCCHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----------CCH------HHH
Q ss_conf 9999999731000011245436--6789998544667754446999999999831556----------650------479
Q gi|255764497|r 390 VVVLIIIASIIWIPVGIWIGFR--PHISSKIQPFAQLLAAFPANVFFPLVVSCVSYYH----------LNP------NLW 451 (587)
Q Consensus 390 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~----------~~~------~~~ 451 (587)
.+=++.+...+.+|+|+..... .+.+-+.......-.++|...+...++..|..+. .+. ...
T Consensus 139 Glw~tli~YliSIPLGI~KAv~~gs~fDvwsS~viiigyAiP~FlfailLiVlFaGGsy~dwFPLRGLvSdnf~~L~~~~ 218 (364)
T COG4174 139 GLWSTLIIYLISIPLGIRKAVRNGSRFDVWSSAVIIIGYAIPAFLFAILLIVLFAGGSYFDWFPLRGLVSDNFDQLSWYG 218 (364)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHCCHHH
T ss_conf 89999999997433328888747984202211368873242799999999974158761012001463458834347278
Q ss_pred HHHHH-HHHHHHH----------HHHHHH-HHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999-9999999----------999999-99973998999999974988789989998574577899999999999999
Q gi|255764497|r 452 LSLLM-IFGTQWY----------ILFNVI-AGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWN 519 (587)
Q Consensus 452 ~~~~~-~~~~~~~----------~~~~~~-~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~ 519 (587)
.+.=+ ...++|. ...-+. +-+..|.+.+.-.||.-|.+..|.+.+-+..-++=-+++|.--+|..++.
T Consensus 219 ki~DYlWH~tLPv~a~v~g~FAt~TlLtKNSFldEi~KqYVvTARAKGlserrvly~HVFRNAMLlviaGfP~afis~FF 298 (364)
T COG4174 219 KITDYLWHITLPVLALVLGGFATLTLLTKNSFLDEIRKQYVVTARAKGLSERRVLYKHVFRNAMLLVIAGFPAAFISMFF 298 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 88999999888899999866777888753058999764526632315885545269988634278876178099999997
Q ss_pred H-HHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9-9999985055644223783799999997349798999999999999999999
Q gi|255764497|r 520 A-SIVSEVASWGHIHLRTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRF 572 (587)
Q Consensus 520 ~-~~~ae~~~~~~~~~~~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 572 (587)
+ ....|.+- +-.|+|-+=+++.-+.||+.++...-+..+++++.+.+
T Consensus 299 TgSLLIE~iF------SLdGlGllgyea~v~RDYPvvfgtLyIftL~GL~~~li 346 (364)
T COG4174 299 TGSLLIEVIF------SLDGLGLLGYEAVVSRDYPVVFGTLYIFTLIGLLVSLI 346 (364)
T ss_pred HHHHHHHHHH------CCCCCCHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH
T ss_conf 1247999987------23662111068786478864216689999999999997
No 160
>COG4174 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=96.91 E-value=0.0094 Score=36.42 Aligned_cols=183 Identities=16% Similarity=0.108 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-------------
Q ss_conf 9999999999999999999999997150--2678999999999743289999999999840145542-------------
Q gi|255764497|r 67 RTTLRMLSAMVISLLFTFVYATLAAKSR--RLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKV------------- 131 (587)
Q Consensus 67 ~Tl~~~~~~~~~~~~ig~~~a~~~~~~~--~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~~------------- 131 (587)
.|+.+.+..+++.-++++|+|+.-+..+ +.+-+-..++.+-.+||.+.++...+.+|.+|..-..
T Consensus 134 VSiSlGlw~tli~YliSIPLGI~KAv~~gs~fDvwsS~viiigyAiP~FlfailLiVlFaGGsy~dwFPLRGLvSdnf~~ 213 (364)
T COG4174 134 VSISLGLWSTLIIYLISIPLGIRKAVRNGSRFDVWSSAVIIIGYAIPAFLFAILLIVLFAGGSYFDWFPLRGLVSDNFDQ 213 (364)
T ss_pred CEEEHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHH
T ss_conf 27876899999999974333288887479842022113688732427999999999741587610120014634588343
Q ss_pred ----------CHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ----------10479999999998535999999999-9729989999999628882012365552621578999999999
Q gi|255764497|r 132 ----------IGAELAAIFAIFTSQVWNMTFSMYQS-LCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSM 200 (587)
Q Consensus 132 ----------~~~~~~~i~~~~~~~~~~i~~~~~~~-l~~i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~ 200 (587)
+....--+.++....+-...+.+..+ ++++.+.+.-.||.-|.+..|.+++.++-.++--+++|.--+|
T Consensus 214 L~~~~ki~DYlWH~tLPv~a~v~g~FAt~TlLtKNSFldEi~KqYVvTARAKGlserrvly~HVFRNAMLlviaGfP~af 293 (364)
T COG4174 214 LSWYGKITDYLWHITLPVLALVLGGFATLTLLTKNSFLDEIRKQYVVTARAKGLSERRVLYKHVFRNAMLLVIAGFPAAF 293 (364)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 47278889999998888999998667778887530589997645266323158855452699886342788761780999
Q ss_pred HHHHHH-HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999899-8999997354442036788999999863113256999999999999999
Q gi|255764497|r 201 SGGWFF-VVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLY 255 (587)
Q Consensus 201 ~~~~~~-~~~~~~~g~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 255 (587)
...+.. ....|.+ ....|+|-.=.++.-+.|++.++...-+..++.++.
T Consensus 294 is~FFTgSLLIE~i------FSLdGlGllgyea~v~RDYPvvfgtLyIftL~GL~~ 343 (364)
T COG4174 294 ISMFFTGSLLIEVI------FSLDGLGLLGYEAVVSRDYPVVFGTLYIFTLIGLLV 343 (364)
T ss_pred HHHHHHHHHHHHHH------HCCCCCCHHHHHHHHCCCCCEEEHHHHHHHHHHHHH
T ss_conf 99997124799998------723662111068786478864216689999999999
No 161
>TIGR01726 HEQRo_perm_3TM amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; InterPro: IPR010065 This entry represents one of several classes of multiple membrane spanning regions found in the inner membrane component of binding-protein-dependent transport systems. The region covered by this entry generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline.; GO: 0005215 transporter activity, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=96.44 E-value=0.063 Score=30.40 Aligned_cols=89 Identities=19% Similarity=0.204 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 406899999999999999999999999999999-7150267899999999974328999999999984014554210479
Q gi|255764497|r 58 VHSLPQYASRTTLRMLSAMVISLLFTFVYATLA-AKSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVIGAEL 136 (587)
Q Consensus 58 ~~~l~~~~~~Tl~~~~~~~~~~~~ig~~~a~~~-~~~~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~~~~~~~ 136 (587)
.+.+++-+..|+...+.+..++.++|...|... .++|..++...-..++.|.+|-++.. +..+|+.-..+-.+..+.
T Consensus 2 ~p~l~~G~~~Tl~~~~~~~~~g~~~Gl~~al~r~s~~~~l~~~~~~Y~~~~Rg~PlLvql--f~~yfgLP~~Gi~l~~~~ 79 (99)
T TIGR01726 2 LPFLLKGLLLTLLISVLSILLGLVLGLLLALLRLSGNRPLRWIATVYVELFRGTPLLVQL--FFIYFGLPLIGIRLSPLT 79 (99)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCCCCCHHH
T ss_conf 178999999999999999999999999999998713599999999999999620799999--999984354277067789
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999998535
Q gi|255764497|r 137 AAIFAIFTSQVW 148 (587)
Q Consensus 137 ~~i~~~~~~~~~ 148 (587)
+.+.....+.--
T Consensus 80 Aa~~al~l~~~A 91 (99)
T TIGR01726 80 AAVIALTLFEGA 91 (99)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999998799
No 162
>COG0390 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=76.58 E-value=3.7 Score=17.54 Aligned_cols=32 Identities=22% Similarity=-0.081 Sum_probs=19.7
Q ss_pred HCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 39989999999749887899899985745778
Q gi|255764497|r 474 AFPNDFKEVASSFHITGWRWWRYIILPGIFPY 505 (587)
Q Consensus 474 ~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~ 505 (587)
+.+++-.|+.-++|++++|..+...=-.++++
T Consensus 151 ~~~~~eie~~LsLGaTp~~A~~~~~r~Air~a 182 (256)
T COG0390 151 ISEKDEIEAKLSLGATPKEASRPYIRSAIRAA 182 (256)
T ss_pred HCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 40389999998528988999799999988886
No 163
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=64.82 E-value=6.6 Score=15.75 Aligned_cols=15 Identities=13% Similarity=0.042 Sum_probs=7.7
Q ss_pred CHHHHHHHHHCCCCH
Q ss_conf 989999999749887
Q gi|255764497|r 476 PNDFKEVASSFHITG 490 (587)
Q Consensus 476 ~~~l~eaa~~lGa~~ 490 (587)
+.+++||++..++..
T Consensus 446 ~~~i~~a~~~a~~~~ 460 (581)
T PRK11176 446 REQIEEAARMAYAMD 460 (581)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 689999999877778
No 164
>pfam02954 HTH_8 Bacterial regulatory protein, Fis family.
Probab=58.34 E-value=8.5 Score=14.97 Aligned_cols=30 Identities=13% Similarity=0.122 Sum_probs=24.9
Q ss_pred HHHHHHHCCHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 999997399899999997498878998999
Q gi|255764497|r 468 VIAGASAFPNDFKEVASSFHITGWRWWRYI 497 (587)
Q Consensus 468 ~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V 497 (587)
+..++++-+.+..+||+.+|.++-+..+|+
T Consensus 10 I~~aL~~~~gn~~~aA~~LGisr~tL~~km 39 (42)
T pfam02954 10 IEAALERTGGNKSKAARLLGISRRTLYRKL 39 (42)
T ss_pred HHHHHHHHCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 999999949979999999796999999999
No 165
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=51.12 E-value=11 Score=14.17 Aligned_cols=55 Identities=16% Similarity=0.010 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999997399899999997498878998999857457789999999999999999999985
Q gi|255764497|r 464 ILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVA 527 (587)
Q Consensus 464 ~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~ 527 (587)
+..++.-.+.+ .++-.|..+-.||+.|-+ .+|.+..|+.+++..+......++++
T Consensus 185 I~NtiR~~i~s-Rr~eIeVmklvGAt~~fI--------~~PFl~~g~~~gl~Ga~~~~~l~~~l 239 (297)
T COG2177 185 IGNTIRLAIFS-RRREIEVMKLVGATDSFI--------RRPFLYEGMLIGLLGALIALALAALL 239 (297)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHCCCHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999995-323799999826411888--------71999999999999999999999999
No 166
>TIGR00801 ncs2 uracil-xanthine permease; InterPro: IPR006042 A number of transport proteins which are involved in the uptake of xanthine or uracil are evolutionary related . They are proteins of from 430 to 595 residues that seem to contain 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane.
Probab=47.63 E-value=12 Score=13.80 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHC
Q ss_conf 7754446999999999831
Q gi|255764497|r 424 LLAAFPANVFFPLVVSCVS 442 (587)
Q Consensus 424 ~~~~ip~~~~~~~~~~~~~ 442 (587)
....||..|+...-++.||
T Consensus 382 l~~~IP~~VlGG~~~~mFG 400 (480)
T TIGR00801 382 LITSIPSPVLGGASIVMFG 400 (480)
T ss_pred HHHHCCCCHHHHHHHHHHH
T ss_conf 9962576113135899999
No 167
>PRK01658 holin-like protein; Validated
Probab=46.58 E-value=13 Score=13.68 Aligned_cols=45 Identities=18% Similarity=0.035 Sum_probs=24.2
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999734979899999999999999999972157899987633
Q gi|255764497|r 542 YIAESTEKGSFPEVVLGVLIMCCFVLALNRFLWHPLYLYGTRCLR 586 (587)
Q Consensus 542 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~r~~ 586 (587)
.-+...-..+.-.....+++-.++++......-|.+.++-|||=|
T Consensus 78 m~y~~ll~~~g~~i~~~i~vsT~~vm~vtg~~~q~l~r~k~rk~~ 122 (122)
T PRK01658 78 MNYGDFLSSKGISLFLVVVISTFVVMIVTGYLTQLLAKRKEREQR 122 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 988999999889999999999999999999999999998872159
No 168
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.36 E-value=14 Score=13.35 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999971
Q gi|255764497|r 68 TTLRMLSAMVISLLFTFVYATLAAK 92 (587)
Q Consensus 68 Tl~~~~~~~~~~~~ig~~~a~~~~~ 92 (587)
++++++...++|+++|+..|++.+|
T Consensus 2 ~l~lail~ivl~ll~G~~~G~fiar 26 (71)
T COG3763 2 SLWLAILLIVLALLAGLIGGFFIAR 26 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0289999999999999999999999
No 169
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=41.39 E-value=15 Score=13.14 Aligned_cols=35 Identities=11% Similarity=0.195 Sum_probs=12.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 49798999999999999999999721578999876
Q gi|255764497|r 550 GSFPEVVLGVLIMCCFVLALNRFLWHPLYLYGTRC 584 (587)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~r 584 (587)
.|.-.+...+++-.++++.....+-++++++-+||
T Consensus 87 ~~~~~Il~~~iiST~lv~~vtg~~~~~l~~~~~~~ 121 (128)
T COG1380 87 ADGLPILVVIIISTLLVLLVTGWVVQLLIRWQSKR 121 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97599999999999999999999999999999764
No 170
>TIGR01102 yscR type III secretion apparatus protein, YscR/HrcR family; InterPro: IPR005773 This model identifies the generic virulence translocation proteins in bacteria. It derives its name:'Yop' from Yersinia enterocolitica species, where this virulence protein was identified. In bacterial pathogenesis, Yop effector proteins are translocated into the eukaryotic cells.; GO: 0015031 protein transport, 0016021 integral to membrane.
Probab=39.58 E-value=16 Score=12.95 Aligned_cols=15 Identities=13% Similarity=0.295 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 444699999999983
Q gi|255764497|r 427 AFPANVFFPLVVSCV 441 (587)
Q Consensus 427 ~ip~~~~~~~~~~~~ 441 (587)
.-|..+-+|+-.+.|
T Consensus 182 VSP~tiS~PfKLLLF 196 (209)
T TIGR01102 182 VSPMTISLPFKLLLF 196 (209)
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 015799999999999
No 171
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=37.91 E-value=17 Score=12.77 Aligned_cols=17 Identities=18% Similarity=0.520 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999989875
Q gi|255764497|r 249 LGVIFLYDQLLFRPMIV 265 (587)
Q Consensus 249 ~~~~~~~~~~~~~~~~~ 265 (587)
+++.+++..+.+.|+..
T Consensus 33 liL~~lL~kf~~~Pi~~ 49 (156)
T CHL00118 33 LLLMVLLNAIFYKPIGK 49 (156)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999998989999
No 172
>TIGR01113 mtrE tetrahydromethanopterin S-methyltransferase, subunit E; InterPro: IPR005780 This model describes N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0006814 sodium ion transport, 0005737 cytoplasm, 0012506 vesicle membrane.
Probab=37.55 E-value=17 Score=12.73 Aligned_cols=30 Identities=3% Similarity=0.098 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999972157899987633
Q gi|255764497|r 557 LGVLIMCCFVLALNRFLWHPLYLYGTRCLR 586 (587)
Q Consensus 557 ~~~~~~~~~~~~~~~l~~~~l~~~~~~r~~ 586 (587)
.-.++++++++++-....||+++.+++||.
T Consensus 267 ~~Sv~~Gliiv~~Lii~N~k~Ev~AR~~YG 296 (298)
T TIGR01113 267 ILSVVIGLIIVLILIILNRKIEVFARNKYG 296 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999999999999982246566420477
No 173
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=35.07 E-value=19 Score=12.46 Aligned_cols=10 Identities=10% Similarity=-0.094 Sum_probs=3.5
Q ss_pred HHCCHHHHHH
Q ss_conf 7299899999
Q gi|255764497|r 159 CNIPRDLEEV 168 (587)
Q Consensus 159 ~~i~~~l~ea 168 (587)
+-++.+..|.
T Consensus 51 ~iikle~Ve~ 60 (141)
T PRK04125 51 KVVKLEQVES 60 (141)
T ss_pred CCCCHHHHHH
T ss_conf 9972999998
No 174
>pfam11120 DUF2636 Protein of unknown function (DUF2636). This family is conserved in the Enterobacteriaceae family. Several members are named as being YhjT, but the function is not known.
Probab=29.25 E-value=23 Score=11.80 Aligned_cols=37 Identities=24% Similarity=0.360 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999715-026789999999997
Q gi|255764497|r 72 MLSAMVISLLFTFVYATLAAKS-RRLGMVLVPILDIMQ 108 (587)
Q Consensus 72 ~~~~~~~~~~ig~~~a~~~~~~-~~~~~~~~~~l~~~~ 108 (587)
.+--.++|.+|-+|+||++-++ ++.+...+..+.=++
T Consensus 6 I~Qlv~lcAlIffpLGYla~~~~~r~r~~~r~lf~~PR 43 (62)
T pfam11120 6 IVQLVLLCALIFFPLGYLARRSLRRIRTTLRLLLASPR 43 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999984099998755899999999861853
No 175
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=27.67 E-value=25 Score=11.61 Aligned_cols=34 Identities=12% Similarity=0.221 Sum_probs=14.6
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1132569999999999999999999989875444
Q gi|255764497|r 235 EQDLLAILYAMLTMLGVIFLYDQLLFRPMIVWSN 268 (587)
Q Consensus 235 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 268 (587)
.++.....+-++..+++.+++-.+.|.|....-.
T Consensus 45 fPn~~~Fia~lIaF~ILl~lL~k~awKPI~k~Ld 78 (201)
T PRK06231 45 FPNFWVFIAHLIAFSILLLLGIFLFWKPTQRFLN 78 (201)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7886999999999999999999997878999999
No 176
>PRK00972 tetrahydromethanopterin S-methyltransferase subunit E; Provisional
Probab=23.16 E-value=29 Score=11.04 Aligned_cols=28 Identities=4% Similarity=0.151 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999999972157899987633
Q gi|255764497|r 559 VLIMCCFVLALNRFLWHPLYLYGTRCLR 586 (587)
Q Consensus 559 ~~~~~~~~~~~~~l~~~~l~~~~~~r~~ 586 (587)
.++++++.+++...+.|+++.+++++|.
T Consensus 262 ~ii~G~iivi~~~i~nr~iEv~aR~~yG 289 (293)
T PRK00972 262 AIIVGLIIVLILIIINRKIEVWARKKYG 289 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 8999999999999999999999997049
No 177
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=23.14 E-value=29 Score=11.04 Aligned_cols=18 Identities=22% Similarity=0.584 Sum_probs=10.4
Q ss_pred HHHHHCCHHHHHHHHHCC
Q ss_conf 999729989999999628
Q gi|255764497|r 156 QSLCNIPRDLEEVSRSFR 173 (587)
Q Consensus 156 ~~l~~i~~~l~eaa~~~G 173 (587)
..++++++.+.|+++++-
T Consensus 24 ~tlkkv~~tldevakt~~ 41 (139)
T COG4768 24 ITLKKVSKTLDEVAKTLK 41 (139)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999987789999999999
No 178
>PRK01844 hypothetical protein; Provisional
Probab=21.84 E-value=31 Score=10.86 Aligned_cols=21 Identities=14% Similarity=0.138 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999971
Q gi|255764497|r 72 MLSAMVISLLFTFVYATLAAK 92 (587)
Q Consensus 72 ~~~~~~~~~~ig~~~a~~~~~ 92 (587)
.+.-.++++++|...|+..+|
T Consensus 6 ~Ili~i~~li~G~~~GffiaR 26 (72)
T PRK01844 6 GILVGVVALVAGVALGFFIAR 26 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999
No 179
>PRK13743 conjugal transfer protein TrbF; Provisional
Probab=20.67 E-value=33 Score=10.69 Aligned_cols=28 Identities=14% Similarity=0.144 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999
Q gi|255764497|r 62 PQYASRTTLRMLSAMVISLLFTFVYATL 89 (587)
Q Consensus 62 ~~~~~~Tl~~~~~~~~~~~~ig~~~a~~ 89 (587)
.++.||++.-++--++.++..|+..+..
T Consensus 78 ~rymWNilMYaIPytL~AlaaGFlv~~~ 105 (140)
T PRK13743 78 FRYMWNILMYAIPYTLWALAAGFLVAGV 105 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999741744431
No 180
>TIGR01478 STEVOR variant surface antigen, stevor family; InterPro: IPR006374 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see . This entry represents the stevor (short for "subtelomeric variable open reading frame") family of predicted variant surface antigens. This is the third largest variant surface antigen family in P. falciparum, with 33 genes identified in the genome of this parasite . The function of these proteins is not known, but they are expressed during several stages of the parasite life-cycle and may play a variety of roles in parasite survival and infection ..
Probab=20.48 E-value=33 Score=10.67 Aligned_cols=25 Identities=12% Similarity=0.061 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2569999999999999999999989
Q gi|255764497|r 238 LLAILYAMLTMLGVIFLYDQLLFRP 262 (587)
Q Consensus 238 ~~~~~~~~~~i~~~~~~~~~~~~~~ 262 (587)
.+-+++++++++++++++...+|-+
T Consensus 274 ~PyGIAAlVLi~L~V~LIiLYIWLY 298 (315)
T TIGR01478 274 LPYGIAALVLIILTVVLIILYIWLY 298 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1358999999999999999988885
Done!