HHsearch alignment for GI: 255764497 and conserved domain: pfam00528
>pfam00528 BPD_transp_1 Binding-protein-dependent transport system inner membrane component. The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Probab=99.83 E-value=2.7e-18 Score=149.25 Aligned_cols=178 Identities=28% Similarity=0.359 Sum_probs=149.4
Q ss_pred CCCCHHHH--HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 00112454--36678999854466775444699999999983155665-0479999999999999999999999739989
Q gi|255764497|r 402 IPVGIWIG--FRPHISSKIQPFAQLLAAFPANVFFPLVVSCVSYYHLN-PNLWLSLLMIFGTQWYILFNVIAGASAFPND 478 (587)
Q Consensus 402 ~~~~~~~~--~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~gl~~i~~~ 478 (587)
T Consensus 2 v~lG~~~a~~~~~~~d~~~~~~~~~~~~iP~~~l~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (183)
T pfam00528 2 IPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVISILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSD 81 (183)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 86999999507858999999999999983499999999999842366789999999999999999999999999706899
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHH
Q ss_conf 99999974988789989998574577899999999999999999999850556442237837999999973497989999
Q gi|255764497|r 479 FKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGHIHLRTTGLGAYIAESTEKGSFPEVVLG 558 (587)
Q Consensus 479 l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~~~~~~~~GlG~~i~~~~~~~~~~~~~~~ 558 (587)
T Consensus 82 ~v~aA~~~G~s~~~i~~~~~lP~~~p~ii~~~~~~~~~~~~~~~~~e~l~~------~~GlG~~~~~a~~~~d~~~~~~~ 155 (183)
T pfam00528 82 LVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGS------WPGLGLLLIEAILGYDYPEIQGP 155 (183)
T ss_pred HHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999869984341299218989999999999999999999999999936------89675999999997709999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999999972157899987633
Q gi|255764497|r 559 VLIMCCFVLALNRFLWHPLYLYGTRCLR 586 (587)
Q Consensus 559 ~~~~~~~~~~~~~l~~~~l~~~~~~r~~ 586 (587)
T Consensus 156 ~~~~~~~~~~~~~~-~d~l~~~ldpr~r 182 (183)
T pfam00528 156 VLAAALILLLLNLL-VDILQRLLDPRVR 182 (183)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHCCCCC
T ss_conf 99999999999999-9999987391017