RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|255764497|ref|YP_003065010.2| ABC transporter permease [Candidatus Liberibacter asiaticus str. psy62] (587 letters) >gnl|CDD|34591 COG4986, COG4986, ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism]. Length = 523 Score = 433 bits (1115), Expect = e-122 Identities = 194/535 (36%), Positives = 273/535 (51%), Gaps = 14/535 (2%) Query: 55 TLDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLGMVLVPILDIMQSIPILG 114 DV +P T RML A++IS+L + A A KS+R + +P+LD++QS+P+LG Sbjct: 1 MNDVLLIPLALLATAGRMLLAILISILTGWFLAYAAIKSKRFENIYIPVLDVLQSVPVLG 60 Query: 115 FLTFTVVYFMNLYPGKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRL 174 F +++F+ L+PG + G ELAA F +FTS WN+ FS YQS +P DL EV+R++RL Sbjct: 61 FFPIVLIFFVYLFPGPL-GVELAADFLVFTSVAWNIWFSEYQSFKTVPSDLLEVARNYRL 119 Query: 175 SGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYI--ALA 232 S + L +PF+MPG+ N+M SMS G+FF+ ASE+I VG L GIGS + LA Sbjct: 120 SFLLRMARLYIPFAMPGIAANLMPSMSDGFFFITASEVITVGIHTYRLFGIGSLLDELLA 179 Query: 233 IKEQDLLAILYAMLTMLGVIFLYDQLLFRPMIVWSNKFRLERTTGIYPADSWVLYLFRKT 292 I + +L I A+L M I LYD FRP +V F + SW ++ Sbjct: 180 IGQYNLAYIGLAILAMAIGILLYDLRRFRPYVVSKYTFDTDAPISRRGRLSWKYDTRLRS 239 Query: 293 NFLRFIGYSSWNFFSPLSNNVKKLCRTLGVIRFHFPENFLQLCSNQRVSYMLDIFWFCVV 352 + +PLS R L E ++ S + ++ Sbjct: 240 VIAK----------NPLSRLAGLYRRRLLSRAEEVFEETRSGKISRYRSVAIGRLILGLL 289 Query: 353 CGVAIGIAWQSIGYIVNHFTYQDVLYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRP 412 A + + + V+ RVVV++ ++ +I I +G I RP Sbjct: 290 VYSAPASISS-VPESLWGALVSETPAVLLYLLYDYLRVVVILALSFLISIFLGYSIALRP 348 Query: 413 HISSKIQPFAQLLAAFPANVFFPLVVSCVSYYHLNPNLWLSLLMIFGTQWYILFNVIAGA 472 + QP Q LAAFPA ++FPL+ + + + L P +WLS L GT +YI +NVIAGA Sbjct: 349 RVEGIGQPLIQFLAAFPAPIYFPLLFAAIKTFILTPEIWLSPLGFIGTFYYIFYNVIAGA 408 Query: 473 SAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGHI 532 A P ++ E A ++++ GW WR IILPG FPY +TG T GGAWNA IV E SWGH Sbjct: 409 KALPVEYFEAAKNYNLGGWAKWRRIILPGTFPYLITGLSTTIGGAWNALIVGEYWSWGHT 468 Query: 533 HLRTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFLWHPLYLYGTRCLRL 587 L GLG YIA +T G P + G IM V+ N W L + Sbjct: 469 LLVAHGLGKYIAVATAAGDIPRALWGSFIMGIVVVVYNILFWRRLMDLARKRYVA 523 >gnl|CDD|30945 COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]. Length = 258 Score = 74.5 bits (183), Expect = 8e-14 Identities = 40/217 (18%), Positives = 88/217 (40%), Gaps = 14/217 (6%) Query: 45 PRDIVDIVPITLDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLGMVLVPIL 104 P ++ + L L Q+ + LR+L ++ + L SR L +L P++ Sbjct: 43 PSAVLAALVELLASGELFQHLLASLLRVLLGFALAAVLGIPLGILMGLSRLLERLLDPLV 102 Query: 105 DIMQSIPILGFLTFTVVYFMNLYPGKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRD 164 +++ IP L +++F E + I + + + + ++ D Sbjct: 103 QVLRPIPPLALAPLAILWFGI--------GETSKIVIAVLGAFFPILINTLDGVRSVDPD 154 Query: 165 LEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPG 224 L E++R+ S WQ + +P ++P + + +++ W +V +E++ G Sbjct: 155 LLELARTLGASRWQILRKVILPAALPYIFTGLRIAIGLAWIGLVVAELLGASS------G 208 Query: 225 IGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQLLFR 261 +G I A + A+L + + L D+L+ Sbjct: 209 LGYLILDARNNLQTDLVFAAILVIALLGLLLDRLVRL 245 Score = 69.8 bits (171), Expect = 2e-12 Identities = 46/189 (24%), Positives = 83/189 (43%), Gaps = 10/189 (5%) Query: 385 ITMFRVVVLIIIASIIWIPVGIWIGFRPHISSKIQPFAQLLAAFPANVFFPLVVSCVSYY 444 ++ RV++ +A+++ IP+GI +G + + P Q+L P PL + Sbjct: 65 ASLLRVLLGFALAAVLGIPLGILMGLSRLLERLLDPLVQVLRPIPPLALAPLAILWFGI- 123 Query: 445 HLNPNLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFP 504 ++ + G + IL N + G + D E+A + + W+ R +ILP P Sbjct: 124 ---GETSKIVIAVLGAFFPILINTLDGVRSVDPDLLELARTLGASRWQILRKVILPAALP 180 Query: 505 YYVTGAITACGGAWNASIVSEVASWGHIHLRTTGLGAYIAESTEKGSFPEVVLGVLIMCC 564 Y TG A G AW +V+E+ ++GLG I ++ V +L++ Sbjct: 181 YIFTGLRIAIGLAWIGLVVAELLG------ASSGLGYLILDARNNLQTDLVFAAILVIAL 234 Query: 565 FVLALNRFL 573 L L+R + Sbjct: 235 LGLLLDRLV 243 >gnl|CDD|33916 COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]. Length = 290 Score = 57.1 bits (138), Expect = 1e-08 Identities = 49/192 (25%), Positives = 92/192 (47%), Gaps = 25/192 (13%) Query: 72 MLSAMVISLLFTFVYATLAAKSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKV 131 +L+A +IS++ AA+S R+ ++ PILD+MQ++P +L V+ F G V Sbjct: 101 VLTATLISIVIGIPLGIWAARSPRVYRIVRPILDLMQTMPTFVYLIPAVMLFGL---GNV 157 Query: 132 IGAELAAIFAI-FTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMP 190 G IFA+ ++ N+ +P +L E + +F + QK + + +P ++P Sbjct: 158 PGLIATVIFAMPPMIRLTNLGIRQ------VPAELIEAADAFGATPRQKLFKVQLPLALP 211 Query: 191 ----GLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAML 246 G+ +M+++S VV + MI G G+G + I+ D+ A L Sbjct: 212 TIMAGINQTIMLALS----MVVIASMIGAG-------GLGQEVLRGIQRLDIGLGFEAGL 260 Query: 247 TMLGVIFLYDQL 258 ++ + + D+L Sbjct: 261 AIVILAIILDRL 272 Score = 35.5 bits (82), Expect = 0.040 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 5/84 (5%) Query: 355 VAIGIAWQSIGYIVNHFTYQDVLYVIWLG-----CITMFRVVVLIIIASIIWIPVGIWIG 409 + +AW + G + FT +L + LG T+ V+ +I+ +I IP+GIW Sbjct: 61 IVALLAWFASGLGLAIFTLLGLLLIGNLGLWDQTMQTLALVLTATLISIVIGIPLGIWAA 120 Query: 410 FRPHISSKIQPFAQLLAAFPANVF 433 P + ++P L+ P V+ Sbjct: 121 RSPRVYRIVRPILDLMQTMPTFVY 144 >gnl|CDD|119394 cd06261, TM_PBP2, Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.. Length = 190 Score = 56.5 bits (137), Expect = 2e-08 Identities = 43/189 (22%), Positives = 82/189 (43%), Gaps = 4/189 (2%) Query: 68 TTLRMLSAMVISLLFTFVYATLAAKSRRLG-MVLVPILDIMQSIPILGFLTFTVVYFMNL 126 T L L A +++L+ + + A+ R +L I+D++ S+P L V+ F L Sbjct: 4 TLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVL 63 Query: 127 YPGKV-IGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGV 185 + G L A+ +L +IP+DL E +R+ S WQ F + + Sbjct: 64 LGWGILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIIL 123 Query: 186 PFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAM 245 P ++P ++ ++++ + + G+ P PG G + AI L + A+ Sbjct: 124 PLALPPILTGLVLAFARALGEFALVSFLGGGEA--PGPGTGLLLIFAILFPGDLGVAAAV 181 Query: 246 LTMLGVIFL 254 +L ++ L Sbjct: 182 ALILLLLSL 190 Score = 48.4 bits (116), Expect = 5e-06 Identities = 34/188 (18%), Positives = 66/188 (35%), Gaps = 8/188 (4%) Query: 385 ITMFRVVVLIIIASIIWIPVGIWIG-FRPHISSKIQPFAQLLAAFPANVFFPLVVSCVSY 443 T+ ++ ++A ++ + +GI + R + ++ LL + P+ V L+V Sbjct: 3 NTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGV 62 Query: 444 YHLNPNLWLS-----LLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYII 498 L +L + + A + P D E A + + W+ +R II Sbjct: 63 LLGWGILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRII 122 Query: 499 LPGIFPYYVTGAITACGGAWNASIVSEVASWGHIHLRTTGLGAYIAESTEKGSFPEVVLG 558 LP P +TG + A A + G G G + + V Sbjct: 123 LPLALPPILTGLVLAFARALGEFALVSFLGGG--EAPGPGTGLLLIFAILFPGDLGVAAA 180 Query: 559 VLIMCCFV 566 V ++ + Sbjct: 181 VALILLLL 188 >gnl|CDD|144205 pfam00528, BPD_transp_1, Binding-protein-dependent transport system inner membrane component. The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices. Length = 183 Score = 52.7 bits (127), Expect = 3e-07 Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 9/163 (5%) Query: 92 KSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVIGAELAAIFAIFTSQVWNMT 151 + RRL +L P++D++Q++P VV + G L AI Sbjct: 12 RGRRLDRLLRPLIDLLQALPSFVLAILLVVISILSILG---HGILPAIILALLGWAGYAR 68 Query: 152 FSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASE 211 +L ++P DL E +R+ S WQ F + +P ++P ++ + ++ G V E Sbjct: 69 LIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLE 128 Query: 212 MIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFL 254 + PG+G + AI D I +L ++ L Sbjct: 129 FL------GSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLL 165 Score = 46.9 bits (112), Expect = 1e-05 Identities = 50/173 (28%), Positives = 74/173 (42%), Gaps = 11/173 (6%) Query: 402 IPVGIWIGFRPHISSK--IQPFAQLLAAFPANVFFPLVVSCVSYYHL-NPNLWLSLLMIF 458 IP+GI R ++P LL A P+ V L+V L + L +L + Sbjct: 2 IPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVISILSILGHGILPAIILALL 61 Query: 459 GTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAW 518 G Y A + P+D E A + + W+ +R IILP P +TG A GGA Sbjct: 62 GWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGAL 121 Query: 519 NASIVSE-VASWGHIHLRTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALN 570 +++ E + SW GLG + E+ +PE+ VL +L LN Sbjct: 122 GGAVLLEFLGSWP-------GLGLLLIEAILGYDYPEIQGPVLAAALILLLLN 167 >gnl|CDD|31367 COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]. Length = 221 Score = 42.8 bits (101), Expect = 2e-04 Identities = 42/188 (22%), Positives = 83/188 (44%), Gaps = 17/188 (9%) Query: 73 LSAMVISLLFTFVYATLAAKSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVI 132 L A++I++L L +SRRL +++ + +++Q+IP L L + V+ Sbjct: 36 LLAVLIAILIGVPLGILVTRSRRLAGLVLGVANVLQTIPSLALLALLIP---------VL 86 Query: 133 G-AELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPG 191 G AI A+F + + + Y L ++P + E +R ++ WQ+ + +P ++P Sbjct: 87 GIGLTPAIIALFLYSLLPIVRNTYTGLASVPPSVIEAARGMGMTRWQRLLKVELPLALP- 145 Query: 192 LVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGV 251 + ++G VV + +I G+G I + + IL + + + Sbjct: 146 ------VILAGIRTAVVINIGTATIAALIGAGGLGDLIFRGLNLNNTALILAGAIPVALL 199 Query: 252 IFLYDQLL 259 L D LL Sbjct: 200 AILADVLL 207 Score = 40.5 bits (95), Expect = 0.001 Identities = 36/200 (18%), Positives = 75/200 (37%), Gaps = 19/200 (9%) Query: 378 YVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRPHISSKIQPFAQLLAAFPANVFFPLV 437 Y++ L + V++ ++IA +I +P+GI + ++ + A +L P+ L+ Sbjct: 23 YLLALTLQHLLLVLLAVLIAILIGVPLGILVTRSRRLAGLVLGVANVLQTIPSLALLALL 82 Query: 438 VSCVSYYHLNPNLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYI 497 + + + L L + I+ N G ++ P E A +T W+ + Sbjct: 83 IPVLGIGLTPAIIALFLYSLLP----IVRNTYTGLASVPPSVIEAARGMGMTRWQRLLKV 138 Query: 498 ILPGIFPYYVTG----AITACGGAWNASIVSEVASWGHIHLRTTGLGAYIAESTEKGSFP 553 LP P + G + G A A+++ GLG I + Sbjct: 139 ELPLALPVILAGIRTAVVINIGTATIAALIG-----------AGGLGDLIFRGLNLNNTA 187 Query: 554 EVVLGVLIMCCFVLALNRFL 573 ++ G + + + + L Sbjct: 188 LILAGAIPVALLAILADVLL 207 >gnl|CDD|30926 COG0581, PstA, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]. Length = 292 Score = 38.3 bits (89), Expect = 0.006 Identities = 36/207 (17%), Positives = 80/207 (38%), Gaps = 20/207 (9%) Query: 10 FISRRIFPNIFDLLAFVLVIGIINILLHGIQETTVPRDIVDIVPITLDVHSLPQYASR-- 67 + RRI + L F+ + LL + + + + S Sbjct: 9 SMRRRIKNKLATGLVFLAAAVALLPLLWILWTILIRGIPALSLNLEFFTGSPSPPGEGGG 68 Query: 68 -------TTLRMLSAMVISL---LFTFVYATLAAKSRRLGMVLVPILDIMQSIP--ILGF 115 T +L A++I + + +Y AK RL V+ +DI+ S+P + G Sbjct: 69 IGPAIVGTLYLILLAILIGVPLGIGAGIYLAEYAKKSRLTKVIRFAIDILASVPSIVYGL 128 Query: 116 LTFTV-VYFMNLYPGKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRL 174 V + + GA A+ + + + ++L +P L E + + Sbjct: 129 FGLGFFVVTLGFGFSALAGALALALLMLPV-----VIRTTEEALRAVPDSLREAAYALGA 183 Query: 175 SGWQKFWYLGVPFSMPGLVWNMMMSMS 201 + WQ + + +P ++PG++ ++++++ Sbjct: 184 TKWQTIFKVVLPAALPGIITGVILAIA 210 >gnl|CDD|33901 COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism]. Length = 225 Score = 36.3 bits (84), Expect = 0.024 Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 23/142 (16%) Query: 75 AMVISLLFTFVYATLAAKSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLY---PGKV 131 + ++ L A L A+ R G L+ L ++ + L V+ F+ L Sbjct: 19 STLLLLPLGIALAYLLARRRFRGKSLLESLVLLPLV-----LPPVVLGFLLLVLFGRNGF 73 Query: 132 IGAELAAIF----------AIFTSQVWNMTFSMYQSLCN----IPRDLEEVSRSFRLSGW 177 IG L F A+ S V ++ M + L I R+LEE +R+ S W Sbjct: 74 IGQFLEDWFGLSLAFSWQGAVLASVVVSLPL-MVRPLRLAFEAIDRELEEAARTLGASRW 132 Query: 178 QKFWYLGVPFSMPGLVWNMMMS 199 + F+ + +P ++PG++ +++S Sbjct: 133 EVFFRITLPLALPGILAGVILS 154 >gnl|CDD|30744 COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]. Length = 281 Score = 35.5 bits (82), Expect = 0.040 Identities = 31/149 (20%), Positives = 59/149 (39%), Gaps = 4/149 (2%) Query: 57 DVHSLPQYASRTTLRMLSAMVISLLFTFVYA-TLAAKSRRLGMVLVPILDIMQSIPILGF 115 +Y + + + + V+SLL + + A LA + +L +L + +P Sbjct: 67 GGPGFLRYFLNSLIVAVGSTVLSLLLSSLAAYALARFRFKGRKLLFLLLLLTLMLPAQVL 126 Query: 116 LTFTVVYFMNLYPGKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLS 175 L + L ++ I + F + Q IP++LEE +R S Sbjct: 127 LIPLYLLMRKL---GLLNTYWGLILPYLAFGLPFAIFLLRQFFRTIPKELEEAARIDGAS 183 Query: 176 GWQKFWYLGVPFSMPGLVWNMMMSMSGGW 204 +Q F+ + +P + PGL + + G W Sbjct: 184 EFQIFFKIVLPLAKPGLAAVAIFTFIGAW 212 >gnl|CDD|35286 KOG0063, KOG0063, KOG0063, RNAse L inhibitor, ABC superfamily [RNA processing and modification]. Length = 592 Score = 35.3 bits (81), Expect = 0.050 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 5/79 (6%) Query: 206 FVVASEMIV---VGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQLLFRP 262 FVV + I+ + D VI G S +A Q LLA + L L + F D FRP Sbjct: 511 FVVEHDFIMATYLADRVIVFEGQPSVNTVANSPQSLLAGMNRFLKNLDITFRRDPNNFRP 570 Query: 263 MI--VWSNKFRLERTTGIY 279 I + S K ++ +G Y Sbjct: 571 RINKLDSQKDVEQKKSGQY 589 >gnl|CDD|31371 COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]. Length = 540 Score = 34.8 bits (80), Expect = 0.063 Identities = 33/176 (18%), Positives = 73/176 (41%), Gaps = 10/176 (5%) Query: 22 LLAFVLVIGIINILLHGIQETTVPRDIVDIVPITLDVHSLPQYASRTTLRMLSAMVISLL 81 LL F++++ ++ ++L + + L Q + L L+A +++++ Sbjct: 297 LLLFLILLPLLAVVLPSFVLNWGR-----PLSLVLASPQFWQALLNSLLLALAAALLAVV 351 Query: 82 FTFVYATLAAKSR-RLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVIGAELAAIF 140 + A + R RL +L + + ++P + L ++ G + + Sbjct: 352 LALLLAYAVRRLRSRLSRLLERLSMLPLAVPGV-VLALGLLLLFRAPDGLLYQPLYTLLI 410 Query: 141 AIFTSQVWNMTF---SMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLV 193 + + + F S+ +L I LEE +RS SG ++F + +P PGL+ Sbjct: 411 LVLAYALRFLPFAVRSLRAALRQIDPSLEEAARSLGASGLRRFRRITLPLLRPGLL 466 Score = 32.5 bits (74), Expect = 0.31 Identities = 29/146 (19%), Positives = 57/146 (39%), Gaps = 14/146 (9%) Query: 61 LPQYASRTTLRMLSAMVISLLFTFVYATLAAKS-----RRLGMVLVPILDIMQSIPILGF 115 L + + T + + ++S++ A L ++ R L +L L I + L + Sbjct: 54 LWRVLANTLILAVLVTLLSVVLGIPLAWLLSRYDFPGRRLLRWLLALPLVIPPFVVALAW 113 Query: 116 LTFTVVYFMNLYPGKVIGAELAAIFAIFTSQVWNMTFSMY--------QSLCNIPRDLEE 167 ++ +++G E +I+ + + F Y +L IP LEE Sbjct: 114 ISLFGPSGPLAALLELLGFESPSIYG-LGGILLALVFFNYPLAYLLVLAALETIPPSLEE 172 Query: 168 VSRSFRLSGWQKFWYLGVPFSMPGLV 193 +R+ S WQ F + +P P + Sbjct: 173 AARTLGASRWQVFRKVTLPLLRPAIA 198 >gnl|CDD|30918 COG0573, PstC, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]. Length = 310 Score = 34.8 bits (80), Expect = 0.075 Identities = 29/148 (19%), Positives = 63/148 (42%), Gaps = 14/148 (9%) Query: 68 TTLRMLSAMVISL---LFTFVYATLAAKSRRLGMVLVPILDIMQSIP--ILGFLTFTVV- 121 T + L A++I++ + T ++ + A RRL VL P ++++ IP + GF V+ Sbjct: 84 TLITSLIALLIAVPVGIGTAIFLSEYAPPRRLRRVLKPAIELLAGIPSVVYGFFGLFVLA 143 Query: 122 --------YFMNLYPGKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFR 173 + G + L A + + + +L +PR L E + + Sbjct: 144 PFLRDVFGPPLGFNLGPFGISILTAGIVLAIMILPTIASLSRDALRAVPRSLREAAYALG 203 Query: 174 LSGWQKFWYLGVPFSMPGLVWNMMMSMS 201 + W+ + +P + G+V +++ + Sbjct: 204 ATKWETIRKVILPAARSGIVGAVILGLG 231 Score = 27.9 bits (62), Expect = 7.3 Identities = 34/149 (22%), Positives = 51/149 (34%), Gaps = 22/149 (14%) Query: 391 VVLIIIASIIWIPVGIWIGF-------RPHISSKIQPFAQLLAAFPANV----------- 432 ++ +IA +I +PVGI + ++P +LLA P+ V Sbjct: 85 LITSLIALLIAVPVGIGTAIFLSEYAPPRRLRRVLKPAIELLAGIPSVVYGFFGLFVLAP 144 Query: 433 FFPLVVSCVSYYHLNPNLWLSLLMIFGTQWYILFNVIA----GASAFPNDFKEVASSFHI 488 F V ++L P L IL + + A P +E A + Sbjct: 145 FLRDVFGPPLGFNLGPFGISILTAGIVLAIMILPTIASLSRDALRAVPRSLREAAYALGA 204 Query: 489 TGWRWWRYIILPGIFPYYVTGAITACGGA 517 T W R +ILP V I G A Sbjct: 205 TKWETIRKVILPAARSGIVGAVILGLGRA 233 >gnl|CDD|31369 COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]. Length = 287 Score = 34.8 bits (80), Expect = 0.077 Identities = 14/44 (31%), Positives = 23/44 (52%) Query: 150 MTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLV 193 M +Y +L I L E +R S +Q F + +P S+PG++ Sbjct: 168 MILPLYAALEKIDPSLLEAARDLGASPFQTFRRVILPLSLPGII 211 >gnl|CDD|31366 COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]. Length = 289 Score = 32.9 bits (75), Expect = 0.23 Identities = 34/152 (22%), Positives = 60/152 (39%), Gaps = 17/152 (11%) Query: 374 QDVLYVIWLGCITMFRVVVLI-IIASIIWIPVGIWIG-----FRPHISSKIQPFAQLLAA 427 +D+L + G R+ +LI ++A +I + +G +G F + + + A Sbjct: 75 RDILSRLLYG----ARISLLIGLLAVLISLVIGTLLGLLAGYFGGWVDRVLMRITDIFLA 130 Query: 428 FPANVFFPLVVSCVSYYHLNPNLWLSLLMIFGTQWYILFNVIAGA--SAFPNDFKEVASS 485 FP L + V+ L P L +L + W ++ G S ++ E A + Sbjct: 131 FP---SLLLAILLVAI--LGPGLLNLILALALVGWPGYARIVRGQVLSLREREYVEAARA 185 Query: 486 FHITGWRWWRYIILPGIFPYYVTGAITACGGA 517 + R ILP + P + A GGA Sbjct: 186 LGASTLRIIFRHILPNVLPPLIVLATLDIGGA 217 Score = 29.1 bits (65), Expect = 3.8 Identities = 45/211 (21%), Positives = 77/211 (36%), Gaps = 17/211 (8%) Query: 57 DVHSLPQYASRTTLRM-LSAMVISLLFTFVYATLAA-KSRRLGMVLVPILDIMQSIPILG 114 D+ S Y +R +L + L A++ISL+ + LA + VL+ I DI + P L Sbjct: 76 DILSRLLYGARISLLIGLLAVLISLVIGTLLGLLAGYFGGWVDRVLMRITDIFLAFPSLL 135 Query: 115 FLTFTVVYFMNLYPGKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRL 174 V G + + A+ + + SL R+ E +R+ Sbjct: 136 LAILLVAIL-----GPGLLNLILALALVGWPGYARIVRGQVLSLRE--REYVEAARALGA 188 Query: 175 SGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIK 234 S + + +P +P L+ + + G + +G P P G+ +A Sbjct: 189 STLRIIFRHILPNVLPPLIVLATLDIGGAILAEAGLSFLGLGVQ-PPTPSWGTMLAEGRN 247 Query: 235 E-------QDLLAILYAMLTMLGVIFLYDQL 258 L L +LT+L L D L Sbjct: 248 YLLTGAWWLVLFPGLAILLTVLAFNLLGDGL 278 >gnl|CDD|36462 KOG1248, KOG1248, KOG1248, Uncharacterized conserved protein [Function unknown]. Length = 1176 Score = 33.0 bits (75), Expect = 0.24 Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 14/108 (12%) Query: 73 LSAMVISLLFTFVYATLAAKSRRLGMV-LVPIL-DIMQSIPILGFLTFTVVYFMNLYPGK 130 + AM + T + L A+S L+P+L D + + F + V M+L K Sbjct: 419 VRAMGPERVLTILPLNLHAESLSFTRSWLLPVLRDYIIGASLAFFTEYIVPLAMSLQL-K 477 Query: 131 VIGAELA----AIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRL 174 + A +++ Q+W S+ CN P DL E SF Sbjct: 478 AKKLKEAGSQVSLYDTLVDQLW----SLLPGFCNYPVDLAE---SFTD 518 >gnl|CDD|30901 COG0555, CysU, ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones]. Length = 274 Score = 30.9 bits (70), Expect = 1.0 Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 1/133 (0%) Query: 122 YFMNLYPGKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFW 181 + K L I A+F + + ++ L I R+ EE +RS S Q F Sbjct: 126 SLLAPLGIKFAFTPLGVIVAMFFVSLPFVVRTVQPVLEEIDREYEEAARSLGASPLQTFR 185 Query: 182 YLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLAI 241 + +P +P L+ ++S + + +I+ G+T + I ++ DL A Sbjct: 186 RVILPLLLPALLAGFILSFARS-IGEFGAVLIIAGNTPYKTETLPLLIYTRLESYDLEAA 244 Query: 242 LYAMLTMLGVIFL 254 + +L + F+ Sbjct: 245 AAISVVLLLISFI 257 Score = 28.2 bits (63), Expect = 6.7 Identities = 18/90 (20%), Positives = 38/90 (42%) Query: 424 LLAAFPANVFFPLVVSCVSYYHLNPNLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVA 483 LL F N +++ + L + + M F + +++ V +++E A Sbjct: 114 LLLLFGPNGLLGSLLAPLGIKFAFTPLGVIVAMFFVSLPFVVRTVQPVLEEIDREYEEAA 173 Query: 484 SSFHITGWRWWRYIILPGIFPYYVTGAITA 513 S + + +R +ILP + P + G I + Sbjct: 174 RSLGASPLQTFRRVILPLLLPALLAGFILS 203 >gnl|CDD|31370 COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]. Length = 267 Score = 30.5 bits (69), Expect = 1.2 Identities = 35/185 (18%), Positives = 71/185 (38%), Gaps = 7/185 (3%) Query: 72 MLSAMVISLLFTFVYATLAAKSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKV 131 L A ++ L A + + L L+ + ++ I + G + + L G Sbjct: 78 ALLATLLGTLAALALARYRFRGKNLLEGLILLPLVVPDI-VTGIALLLLFAALGLPGGF- 135 Query: 132 IGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPG 191 + A + + + L R LEE +R S WQ F + +P +PG Sbjct: 136 ----WTIVLAHIVFALPFVVVVVSARLQGFDRSLEEAARDLGASPWQTFRRVTLPLILPG 191 Query: 192 LVWNMMMSMSGGW-FFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLG 250 ++ +++ + + FV+ + G T +PL E + L+ L +L++L Sbjct: 192 ILSGALLAFTLSFDEFVITFFLAGPGFTTLPLQIYSMIRRGITPEINALSTLLLLLSLLL 251 Query: 251 VIFLY 255 ++ Sbjct: 252 ILLAS 256 Score = 28.2 bits (63), Expect = 5.9 Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 6/114 (5%) Query: 463 YILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASI 522 +++ V A F +E A + W+ +R + LP I P ++GA+ A +++ + Sbjct: 149 FVVVVVSARLQGFDRSLEEAARDLGASPWQTFRRVTLPLILPGILSGALLAFTLSFDEFV 208 Query: 523 VSEVASWGHIHLRTTGLGAYIAESTEKGSFPEV--VLGVLIMCCFVLALNRFLW 574 ++ + T L I +G PE+ + +L++ +L L Sbjct: 209 ITFFLAGP----GFTTLPLQIYSMIRRGITPEINALSTLLLLLSLLLILLASRL 258 >gnl|CDD|33626 COG3833, MalG, ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism]. Length = 282 Score = 30.5 bits (69), Expect = 1.4 Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 7/143 (4%) Query: 69 TLRMLSAMVISLLFTFVYATLAAKSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYP 128 + + + L + ++ K R+ + IL Q P G +Y + L Sbjct: 83 LITAAITVALVTLAAYAFSRYRFKGRKYLLKFFLIL---QMFP--GVAALIALYVL-LKL 136 Query: 129 GKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFS 188 ++ I A + T+ + IP+ L+E ++ + +Q F + +P S Sbjct: 137 LGLLNTLWGLILAYLGGAIPMNTWLIKGYFDTIPKSLDEAAKIDGATRFQIFRRILLPLS 196 Query: 189 MPGLVWNMMMSMSGGWF-FVVAS 210 P L +++ G + F++AS Sbjct: 197 KPILAVVALLAFIGPFGDFILAS 219 >gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 246 Score = 30.3 bits (68), Expect = 1.4 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 6/68 (8%) Query: 206 FVVASEMIV---VGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQLLFRP 262 FVV ++I+ + D +I G S +A Q L + + L L + F D RP Sbjct: 170 FVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLRSGMNRFLKNLDITFRRDPETGRP 229 Query: 263 MIVWSNKF 270 I NK Sbjct: 230 RI---NKL 234 >gnl|CDD|31368 COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]. Length = 295 Score = 30.2 bits (68), Expect = 1.6 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 4/71 (5%) Query: 138 AIFAIFTSQVWNMT-FSM---YQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLV 193 A+FA+ VW T F M L +IP++L E +R S WQ+F + +P P + Sbjct: 157 ALFAVIIVSVWKGTGFVMLLFLAGLQSIPKELYEAARIDGASPWQRFRKITLPLLRPVIF 216 Query: 194 WNMMMSMSGGW 204 + +++ + Sbjct: 217 FVLILRTIFAF 227 >gnl|CDD|34663 COG5058, LAG1, Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]. Length = 395 Score = 30.3 bits (68), Expect = 1.7 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 3/87 (3%) Query: 380 IWLGCITMFRVVVLIIIASIIWIPVGIWIGFRPHISSKIQPFAQLLAAFPANVFFPLVVS 439 +L + ++ I I V IWI R +++ KI +L AF F L V+ Sbjct: 271 FFLSLSKTLNYLNSVLATFIFGIFVFIWIYSRHYLNLKI--LWSVLTAFRTIGNFVLDVA 328 Query: 440 CVSYYHLNPNLWLSLLMIFGTQWYILF 466 Y +L + +++ Q ++ Sbjct: 329 -TQQYKCWISLPIVFILLQALQLVNIY 354 >gnl|CDD|100034 cd02203, PurL_repeat1, PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), first repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.. Length = 313 Score = 28.6 bits (65), Expect = 4.5 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 12/51 (23%) Query: 510 AITACGGAWNASIVSEVASWG---------HIHLRTTGLGAY---IAESTE 548 I G +S VSE+A+ G + LR G+ + I+ES E Sbjct: 214 GIQDLGAGGLSSAVSEMAAKGGLGAEIDLDKVPLREPGMSPWEIWISESQE 264 >gnl|CDD|176544 cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively. Length = 309 Score = 28.8 bits (65), Expect = 4.8 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 5/46 (10%) Query: 55 TLDVHSLPQYASRTTLRMLSAMVISLLFT--FVYA---TLAAKSRR 95 T DV P++A R T + + + ++ FT F A TL A+ R Sbjct: 55 TTDVADHPEFADRKTTKTVDGVNVTGWFTEDFTLAELKTLRARQRL 100 >gnl|CDD|133464 cd06854, GT_WbpL_WbcO_like, The members of this subfamily catalyze the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate (Und-P) molecule and N-acetylhexosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylhexosamine precursor. The WbcO/WbpL substrate specificity has not yet been determined, but the structure of their biosynthetic end products implies that UDP-N-acetyl-D-fucosamine (UDP-FucNAc) and/or UDPN-acetyl-D-quinosamine (UDP-QuiNAc) are used. The subgroup of bacterial UDP-HexNAc:polyprenol-P HexNAc-1-P transferases includes the WbcO protein from Yersinia enterocolitica and the WbpL protein from Pseudomonas aeruginosa. These transferases initiate LPS O-antigen biosynthesis. Similar to other GlcNAc/MurNAc-1-P transferase family members, WbpL is a highly hydrophobic protein possessing 11 predicted transmembrane segments. Length = 253 Score = 28.4 bits (64), Expect = 6.0 Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 10/97 (10%) Query: 379 VIWLGCITMFRVVVLIIIASIIWIPVGIW----IGF---RPHISSKIQPFAQLLAAFPAN 431 + +L + + + S + + +G+ +GF +S KI+ QLLAA A Sbjct: 25 LAFLLALLLAAAAGPLNDLSYLLLLIGLLLLAAVGFIDDLRSLSPKIRLLVQLLAAALAL 84 Query: 432 VFFPLVVSCVSYYHLNPNLWLSLLMIFGTQWYI-LFN 467 + S + P ++LL++ W I L+N Sbjct: 85 YALGPLTS--LLLNFLPPWLIALLLLLAIVWIINLYN 119 >gnl|CDD|33937 COG4208, CysW, ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]. Length = 287 Score = 27.9 bits (62), Expect = 7.0 Identities = 34/154 (22%), Positives = 67/154 (43%), Gaps = 21/154 (13%) Query: 62 PQYASRTTLRMLSAMV---ISLLFTFVYATLAAKSRRLG-MVLVPILDIMQSI-PILGFL 116 P S L +L A++ ++++F A A+ G +L+ ++D+ S+ P++ L Sbjct: 61 PDALSAIKLTLLVALIAVPLNVVFGVAAAWAIARFEFPGKALLLTLIDLPFSVSPVVAGL 120 Query: 117 TFTVVYFMNLYPGKVI------------GAELAAIFAIFTSQVWNMTFSMYQSLCNIPRD 164 + +++ N + G + G LA IF + M + D Sbjct: 121 VYVLLFGSNGWLGGWLEAHDIQIIFAVPGIVLATIFVTCPFVARELIPLMQEQ----GTD 176 Query: 165 LEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMM 198 EE + + SGWQ FW + +P GL++ +++ Sbjct: 177 EEEAALTLGASGWQTFWRVTLPNIRWGLLYGVVL 210 >gnl|CDD|144450 pfam00858, ASC, Amiloride-sensitive sodium channel. Length = 441 Score = 28.2 bits (63), Expect = 7.1 Identities = 5/28 (17%), Positives = 10/28 (35%) Query: 346 IFWFCVVCGVAIGIAWQSIGYIVNHFTY 373 +FW V + +Q + +Y Sbjct: 24 VFWLLVFLVSLGLLIYQIGNLYEKYLSY 51 >gnl|CDD|164564 CHL00187, cysT, sulfate transport protein; Provisional. Length = 237 Score = 27.7 bits (62), Expect = 8.4 Identities = 48/209 (22%), Positives = 87/209 (41%), Gaps = 28/209 (13%) Query: 10 FISRRIFPNIFDL--LAFVLVIGIINILLHGIQETTVPRDIVDIVPITLDVHSLPQYASR 67 F + I L + F+LV+ I+ +L+ Q+ D + + + A Sbjct: 6 FSLKFSSIYIISLSYIIFLLVLPILALLIKASQQ-----PWSDFLQKATE--PIALSAYS 58 Query: 68 TTLRM-LSAMVISLLFTFVYATLAAKSRRLGM-VLVPILDIMQSIP-ILGFLTFTVVY-- 122 TL M L A +I+ F + A + + G +L +D+ ++P + LT VY Sbjct: 59 LTLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATVYGD 118 Query: 123 ------FMNLYPGKV----IGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSF 172 ++ ++ +G LA IF F + ++ L I ++LEE + S Sbjct: 119 NGWIGHLLSHLGIQIVFTKLGVLLAMIFVSFPF----VVRTIQPVLQEIEKELEEAAWSL 174 Query: 173 RLSGWQKFWYLGVPFSMPGLVWNMMMSMS 201 S WQ FW + P +P L+ + ++ S Sbjct: 175 GASPWQTFWKVIFPPLIPALLTGLALTFS 203 >gnl|CDD|35442 KOG0221, KOG0221, KOG0221, Mismatch repair ATPase MSH5 (MutS family) [Replication, recombination and repair]. Length = 849 Score = 27.7 bits (61), Expect = 9.4 Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 24/106 (22%) Query: 21 DLLAFVLVIGIINILLHGIQETTVPRDIVDIVPITLDVHSLPQYASRTTLRMLSAMVISL 80 L A ++ + +I+ T D I + D+ ++ + Sbjct: 158 ALTATEKILFLSSIIPFDCLLT--EEDKYIITKMRFDIEAVVR----------------- 198 Query: 81 LFTFVYATLAAKSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNL 126 RR+G+ L S+PILG F + + +N+ Sbjct: 199 --ALGGLLKFLGRRRIGVELEDY---NVSVPILGIKKFMLTHLVNI 239 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.332 0.145 0.480 Gapped Lambda K H 0.267 0.0707 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 8,007,898 Number of extensions: 470572 Number of successful extensions: 1941 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1897 Number of HSP's successfully gapped: 171 Length of query: 587 Length of database: 6,263,737 Length adjustment: 99 Effective length of query: 488 Effective length of database: 4,124,446 Effective search space: 2012729648 Effective search space used: 2012729648 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 60 (26.9 bits)