RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|255764497|ref|YP_003065010.2| ABC transporter permease
[Candidatus Liberibacter asiaticus str. psy62]
         (587 letters)



>gnl|CDD|34591 COG4986, COG4986, ABC-type anion transport system, duplicated
           permease component [Inorganic ion transport and
           metabolism].
          Length = 523

 Score =  433 bits (1115), Expect = e-122
 Identities = 194/535 (36%), Positives = 273/535 (51%), Gaps = 14/535 (2%)

Query: 55  TLDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLGMVLVPILDIMQSIPILG 114
             DV  +P     T  RML A++IS+L  +  A  A KS+R   + +P+LD++QS+P+LG
Sbjct: 1   MNDVLLIPLALLATAGRMLLAILISILTGWFLAYAAIKSKRFENIYIPVLDVLQSVPVLG 60

Query: 115 FLTFTVVYFMNLYPGKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRL 174
           F    +++F+ L+PG + G ELAA F +FTS  WN+ FS YQS   +P DL EV+R++RL
Sbjct: 61  FFPIVLIFFVYLFPGPL-GVELAADFLVFTSVAWNIWFSEYQSFKTVPSDLLEVARNYRL 119

Query: 175 SGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYI--ALA 232
           S   +   L +PF+MPG+  N+M SMS G+FF+ ASE+I VG     L GIGS +   LA
Sbjct: 120 SFLLRMARLYIPFAMPGIAANLMPSMSDGFFFITASEVITVGIHTYRLFGIGSLLDELLA 179

Query: 233 IKEQDLLAILYAMLTMLGVIFLYDQLLFRPMIVWSNKFRLERTTGIYPADSWVLYLFRKT 292
           I + +L  I  A+L M   I LYD   FRP +V    F  +         SW      ++
Sbjct: 180 IGQYNLAYIGLAILAMAIGILLYDLRRFRPYVVSKYTFDTDAPISRRGRLSWKYDTRLRS 239

Query: 293 NFLRFIGYSSWNFFSPLSNNVKKLCRTLGVIRFHFPENFLQLCSNQRVSYMLDIFWFCVV 352
              +          +PLS       R L        E       ++  S  +      ++
Sbjct: 240 VIAK----------NPLSRLAGLYRRRLLSRAEEVFEETRSGKISRYRSVAIGRLILGLL 289

Query: 353 CGVAIGIAWQSIGYIVNHFTYQDVLYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRP 412
              A       +   +      +   V+        RVVV++ ++ +I I +G  I  RP
Sbjct: 290 VYSAPASISS-VPESLWGALVSETPAVLLYLLYDYLRVVVILALSFLISIFLGYSIALRP 348

Query: 413 HISSKIQPFAQLLAAFPANVFFPLVVSCVSYYHLNPNLWLSLLMIFGTQWYILFNVIAGA 472
            +    QP  Q LAAFPA ++FPL+ + +  + L P +WLS L   GT +YI +NVIAGA
Sbjct: 349 RVEGIGQPLIQFLAAFPAPIYFPLLFAAIKTFILTPEIWLSPLGFIGTFYYIFYNVIAGA 408

Query: 473 SAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGHI 532
            A P ++ E A ++++ GW  WR IILPG FPY +TG  T  GGAWNA IV E  SWGH 
Sbjct: 409 KALPVEYFEAAKNYNLGGWAKWRRIILPGTFPYLITGLSTTIGGAWNALIVGEYWSWGHT 468

Query: 533 HLRTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFLWHPLYLYGTRCLRL 587
            L   GLG YIA +T  G  P  + G  IM   V+  N   W  L     +    
Sbjct: 469 LLVAHGLGKYIAVATAAGDIPRALWGSFIMGIVVVVYNILFWRRLMDLARKRYVA 523


>gnl|CDD|30945 COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport
           system, permease component [Inorganic ion transport and
           metabolism].
          Length = 258

 Score = 74.5 bits (183), Expect = 8e-14
 Identities = 40/217 (18%), Positives = 88/217 (40%), Gaps = 14/217 (6%)

Query: 45  PRDIVDIVPITLDVHSLPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLGMVLVPIL 104
           P  ++  +   L    L Q+   + LR+L    ++ +       L   SR L  +L P++
Sbjct: 43  PSAVLAALVELLASGELFQHLLASLLRVLLGFALAAVLGIPLGILMGLSRLLERLLDPLV 102

Query: 105 DIMQSIPILGFLTFTVVYFMNLYPGKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRD 164
            +++ IP L      +++F           E + I        + +  +    + ++  D
Sbjct: 103 QVLRPIPPLALAPLAILWFGI--------GETSKIVIAVLGAFFPILINTLDGVRSVDPD 154

Query: 165 LEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPG 224
           L E++R+   S WQ    + +P ++P +   + +++   W  +V +E++          G
Sbjct: 155 LLELARTLGASRWQILRKVILPAALPYIFTGLRIAIGLAWIGLVVAELLGASS------G 208

Query: 225 IGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQLLFR 261
           +G  I  A        +  A+L +  +  L D+L+  
Sbjct: 209 LGYLILDARNNLQTDLVFAAILVIALLGLLLDRLVRL 245



 Score = 69.8 bits (171), Expect = 2e-12
 Identities = 46/189 (24%), Positives = 83/189 (43%), Gaps = 10/189 (5%)

Query: 385 ITMFRVVVLIIIASIIWIPVGIWIGFRPHISSKIQPFAQLLAAFPANVFFPLVVSCVSYY 444
            ++ RV++   +A+++ IP+GI +G    +   + P  Q+L   P     PL +      
Sbjct: 65  ASLLRVLLGFALAAVLGIPLGILMGLSRLLERLLDPLVQVLRPIPPLALAPLAILWFGI- 123

Query: 445 HLNPNLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFP 504
                    ++ + G  + IL N + G  +   D  E+A +   + W+  R +ILP   P
Sbjct: 124 ---GETSKIVIAVLGAFFPILINTLDGVRSVDPDLLELARTLGASRWQILRKVILPAALP 180

Query: 505 YYVTGAITACGGAWNASIVSEVASWGHIHLRTTGLGAYIAESTEKGSFPEVVLGVLIMCC 564
           Y  TG   A G AW   +V+E+         ++GLG  I ++        V   +L++  
Sbjct: 181 YIFTGLRIAIGLAWIGLVVAELLG------ASSGLGYLILDARNNLQTDLVFAAILVIAL 234

Query: 565 FVLALNRFL 573
             L L+R +
Sbjct: 235 LGLLLDRLV 243


>gnl|CDD|33916 COG4176, ProW, ABC-type proline/glycine betaine transport system,
           permease component [Amino acid transport and
           metabolism].
          Length = 290

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 49/192 (25%), Positives = 92/192 (47%), Gaps = 25/192 (13%)

Query: 72  MLSAMVISLLFTFVYATLAAKSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKV 131
           +L+A +IS++        AA+S R+  ++ PILD+MQ++P   +L   V+ F     G V
Sbjct: 101 VLTATLISIVIGIPLGIWAARSPRVYRIVRPILDLMQTMPTFVYLIPAVMLFGL---GNV 157

Query: 132 IGAELAAIFAI-FTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMP 190
            G     IFA+    ++ N+          +P +L E + +F  +  QK + + +P ++P
Sbjct: 158 PGLIATVIFAMPPMIRLTNLGIRQ------VPAELIEAADAFGATPRQKLFKVQLPLALP 211

Query: 191 ----GLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAML 246
               G+   +M+++S     VV + MI  G       G+G  +   I+  D+     A L
Sbjct: 212 TIMAGINQTIMLALS----MVVIASMIGAG-------GLGQEVLRGIQRLDIGLGFEAGL 260

Query: 247 TMLGVIFLYDQL 258
            ++ +  + D+L
Sbjct: 261 AIVILAIILDRL 272



 Score = 35.5 bits (82), Expect = 0.040
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 355 VAIGIAWQSIGYIVNHFTYQDVLYVIWLG-----CITMFRVVVLIIIASIIWIPVGIWIG 409
           +   +AW + G  +  FT   +L +  LG       T+  V+   +I+ +I IP+GIW  
Sbjct: 61  IVALLAWFASGLGLAIFTLLGLLLIGNLGLWDQTMQTLALVLTATLISIVIGIPLGIWAA 120

Query: 410 FRPHISSKIQPFAQLLAAFPANVF 433
             P +   ++P   L+   P  V+
Sbjct: 121 RSPRVYRIVRPILDLMQTMPTFVY 144


>gnl|CDD|119394 cd06261, TM_PBP2, Transmembrane subunit (TM) found in Periplasmic
           Binding Protein (PBP)-dependent ATP-Binding Cassette
           (ABC) transporters which generally bind type 2 PBPs.
           These types of transporters consist of a PBP, two TMs,
           and two cytoplasmic ABC ATPase subunits, and are mainly
           involved in importing solutes from the environment. The
           solute is captured by the PBP which delivers it to a
           gated translocation pathway formed by the two TMs. The
           two ABCs bind and hydrolyze ATP and drive the transport
           reaction. For these transporters the ABCs and TMs are on
           independent polypeptide chains. These systems transport
           a diverse range of substrates. Most are specific for a
           single substrate or a group of related substrates;
           however some transporters are more promiscuous,
           transporting structurally diverse substrates such as the
           histidine/lysine and arginine transporter in
           Enterobacteriaceae. In the latter case, this is achieved
           through binding different PBPs with different
           specificities to the TMs. For other promiscuous
           transporters such as the multiple-sugar transporter Msm
           of Streptococcus mutans, the PBP has a wide substrate
           specificity. These transporters include the
           maltose-maltodextrin, phosphate and sulfate
           transporters, among others..
          Length = 190

 Score = 56.5 bits (137), Expect = 2e-08
 Identities = 43/189 (22%), Positives = 82/189 (43%), Gaps = 4/189 (2%)

Query: 68  TTLRMLSAMVISLLFTFVYATLAAKSRRLG-MVLVPILDIMQSIPILGFLTFTVVYFMNL 126
           T L  L A +++L+   +   + A+ R     +L  I+D++ S+P L      V+ F  L
Sbjct: 4   TLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVL 63

Query: 127 YPGKV-IGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGV 185
               +  G  L A+                 +L +IP+DL E +R+   S WQ F  + +
Sbjct: 64  LGWGILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIIL 123

Query: 186 PFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAM 245
           P ++P ++  ++++ +           +  G+   P PG G  +  AI     L +  A+
Sbjct: 124 PLALPPILTGLVLAFARALGEFALVSFLGGGEA--PGPGTGLLLIFAILFPGDLGVAAAV 181

Query: 246 LTMLGVIFL 254
             +L ++ L
Sbjct: 182 ALILLLLSL 190



 Score = 48.4 bits (116), Expect = 5e-06
 Identities = 34/188 (18%), Positives = 66/188 (35%), Gaps = 8/188 (4%)

Query: 385 ITMFRVVVLIIIASIIWIPVGIWIG-FRPHISSKIQPFAQLLAAFPANVFFPLVVSCVSY 443
            T+   ++  ++A ++ + +GI +   R  +   ++    LL + P+ V   L+V     
Sbjct: 3   NTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGV 62

Query: 444 YHLNPNLWLS-----LLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYII 498
                 L        +L +     +      A   + P D  E A +   + W+ +R II
Sbjct: 63  LLGWGILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRII 122

Query: 499 LPGIFPYYVTGAITACGGAWNASIVSEVASWGHIHLRTTGLGAYIAESTEKGSFPEVVLG 558
           LP   P  +TG + A   A     +      G       G G  +  +        V   
Sbjct: 123 LPLALPPILTGLVLAFARALGEFALVSFLGGG--EAPGPGTGLLLIFAILFPGDLGVAAA 180

Query: 559 VLIMCCFV 566
           V ++   +
Sbjct: 181 VALILLLL 188


>gnl|CDD|144205 pfam00528, BPD_transp_1, Binding-protein-dependent transport system
           inner membrane component.  The alignments cover the most
           conserved region of the proteins, which is thought to be
           located in a cytoplasmic loop between two transmembrane
           domains. The members of this family have a variable
           number of transmembrane helices.
          Length = 183

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 9/163 (5%)

Query: 92  KSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVIGAELAAIFAIFTSQVWNMT 151
           + RRL  +L P++D++Q++P        VV  +    G      L AI            
Sbjct: 12  RGRRLDRLLRPLIDLLQALPSFVLAILLVVISILSILG---HGILPAIILALLGWAGYAR 68

Query: 152 FSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASE 211
                +L ++P DL E +R+   S WQ F  + +P ++P ++  + ++  G     V  E
Sbjct: 69  LIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLE 128

Query: 212 MIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFL 254
            +         PG+G  +  AI   D   I   +L    ++ L
Sbjct: 129 FL------GSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLL 165



 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 50/173 (28%), Positives = 74/173 (42%), Gaps = 11/173 (6%)

Query: 402 IPVGIWIGFRPHISSK--IQPFAQLLAAFPANVFFPLVVSCVSYYHL-NPNLWLSLLMIF 458
           IP+GI    R        ++P   LL A P+ V   L+V       L +  L   +L + 
Sbjct: 2   IPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVISILSILGHGILPAIILALL 61

Query: 459 GTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAW 518
           G   Y      A   + P+D  E A +   + W+ +R IILP   P  +TG   A GGA 
Sbjct: 62  GWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGAL 121

Query: 519 NASIVSE-VASWGHIHLRTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALN 570
             +++ E + SW        GLG  + E+     +PE+   VL     +L LN
Sbjct: 122 GGAVLLEFLGSWP-------GLGLLLIEAILGYDYPEIQGPVLAAALILLLLN 167


>gnl|CDD|31367 COG1174, OpuBB, ABC-type proline/glycine betaine transport systems,
           permease component [Amino acid transport and
           metabolism].
          Length = 221

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 42/188 (22%), Positives = 83/188 (44%), Gaps = 17/188 (9%)

Query: 73  LSAMVISLLFTFVYATLAAKSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVI 132
           L A++I++L       L  +SRRL  +++ + +++Q+IP L  L   +          V+
Sbjct: 36  LLAVLIAILIGVPLGILVTRSRRLAGLVLGVANVLQTIPSLALLALLIP---------VL 86

Query: 133 G-AELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPG 191
           G     AI A+F   +  +  + Y  L ++P  + E +R   ++ WQ+   + +P ++P 
Sbjct: 87  GIGLTPAIIALFLYSLLPIVRNTYTGLASVPPSVIEAARGMGMTRWQRLLKVELPLALP- 145

Query: 192 LVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGV 251
                 + ++G    VV +        +I   G+G  I   +   +   IL   + +  +
Sbjct: 146 ------VILAGIRTAVVINIGTATIAALIGAGGLGDLIFRGLNLNNTALILAGAIPVALL 199

Query: 252 IFLYDQLL 259
             L D LL
Sbjct: 200 AILADVLL 207



 Score = 40.5 bits (95), Expect = 0.001
 Identities = 36/200 (18%), Positives = 75/200 (37%), Gaps = 19/200 (9%)

Query: 378 YVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRPHISSKIQPFAQLLAAFPANVFFPLV 437
           Y++ L    +  V++ ++IA +I +P+GI +     ++  +   A +L   P+     L+
Sbjct: 23  YLLALTLQHLLLVLLAVLIAILIGVPLGILVTRSRRLAGLVLGVANVLQTIPSLALLALL 82

Query: 438 VSCVSYYHLNPNLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYI 497
           +  +        + L L  +      I+ N   G ++ P    E A    +T W+    +
Sbjct: 83  IPVLGIGLTPAIIALFLYSLLP----IVRNTYTGLASVPPSVIEAARGMGMTRWQRLLKV 138

Query: 498 ILPGIFPYYVTG----AITACGGAWNASIVSEVASWGHIHLRTTGLGAYIAESTEKGSFP 553
            LP   P  + G     +   G A  A+++              GLG  I       +  
Sbjct: 139 ELPLALPVILAGIRTAVVINIGTATIAALIG-----------AGGLGDLIFRGLNLNNTA 187

Query: 554 EVVLGVLIMCCFVLALNRFL 573
            ++ G + +    +  +  L
Sbjct: 188 LILAGAIPVALLAILADVLL 207


>gnl|CDD|30926 COG0581, PstA, ABC-type phosphate transport system, permease
           component [Inorganic ion transport and metabolism].
          Length = 292

 Score = 38.3 bits (89), Expect = 0.006
 Identities = 36/207 (17%), Positives = 80/207 (38%), Gaps = 20/207 (9%)

Query: 10  FISRRIFPNIFDLLAFVLVIGIINILLHGIQETTVPRDIVDIVPITLDVHSLPQYASR-- 67
            + RRI   +   L F+     +  LL  +    +       + +     S         
Sbjct: 9   SMRRRIKNKLATGLVFLAAAVALLPLLWILWTILIRGIPALSLNLEFFTGSPSPPGEGGG 68

Query: 68  -------TTLRMLSAMVISL---LFTFVYATLAAKSRRLGMVLVPILDIMQSIP--ILGF 115
                  T   +L A++I +   +   +Y    AK  RL  V+   +DI+ S+P  + G 
Sbjct: 69  IGPAIVGTLYLILLAILIGVPLGIGAGIYLAEYAKKSRLTKVIRFAIDILASVPSIVYGL 128

Query: 116 LTFTV-VYFMNLYPGKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRL 174
                 V  +      + GA   A+  +       +  +  ++L  +P  L E + +   
Sbjct: 129 FGLGFFVVTLGFGFSALAGALALALLMLPV-----VIRTTEEALRAVPDSLREAAYALGA 183

Query: 175 SGWQKFWYLGVPFSMPGLVWNMMMSMS 201
           + WQ  + + +P ++PG++  ++++++
Sbjct: 184 TKWQTIFKVVLPAALPGIITGVILAIA 210


>gnl|CDD|33901 COG4149, ModC, ABC-type molybdate transport system, permease
           component [Inorganic ion transport and metabolism].
          Length = 225

 Score = 36.3 bits (84), Expect = 0.024
 Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 23/142 (16%)

Query: 75  AMVISLLFTFVYATLAAKSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLY---PGKV 131
           + ++ L      A L A+ R  G  L+  L ++  +     L   V+ F+ L        
Sbjct: 19  STLLLLPLGIALAYLLARRRFRGKSLLESLVLLPLV-----LPPVVLGFLLLVLFGRNGF 73

Query: 132 IGAELAAIF----------AIFTSQVWNMTFSMYQSLCN----IPRDLEEVSRSFRLSGW 177
           IG  L   F          A+  S V ++   M + L      I R+LEE +R+   S W
Sbjct: 74  IGQFLEDWFGLSLAFSWQGAVLASVVVSLPL-MVRPLRLAFEAIDRELEEAARTLGASRW 132

Query: 178 QKFWYLGVPFSMPGLVWNMMMS 199
           + F+ + +P ++PG++  +++S
Sbjct: 133 EVFFRITLPLALPGILAGVILS 154


>gnl|CDD|30744 COG0395, UgpE, ABC-type sugar transport system, permease component
           [Carbohydrate transport and metabolism].
          Length = 281

 Score = 35.5 bits (82), Expect = 0.040
 Identities = 31/149 (20%), Positives = 59/149 (39%), Gaps = 4/149 (2%)

Query: 57  DVHSLPQYASRTTLRMLSAMVISLLFTFVYA-TLAAKSRRLGMVLVPILDIMQSIPILGF 115
                 +Y   + +  + + V+SLL + + A  LA    +   +L  +L +   +P    
Sbjct: 67  GGPGFLRYFLNSLIVAVGSTVLSLLLSSLAAYALARFRFKGRKLLFLLLLLTLMLPAQVL 126

Query: 116 LTFTVVYFMNLYPGKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLS 175
           L    +    L    ++      I       +    F + Q    IP++LEE +R    S
Sbjct: 127 LIPLYLLMRKL---GLLNTYWGLILPYLAFGLPFAIFLLRQFFRTIPKELEEAARIDGAS 183

Query: 176 GWQKFWYLGVPFSMPGLVWNMMMSMSGGW 204
            +Q F+ + +P + PGL    + +  G W
Sbjct: 184 EFQIFFKIVLPLAKPGLAAVAIFTFIGAW 212


>gnl|CDD|35286 KOG0063, KOG0063, KOG0063, RNAse L inhibitor, ABC superfamily [RNA
           processing and modification].
          Length = 592

 Score = 35.3 bits (81), Expect = 0.050
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 5/79 (6%)

Query: 206 FVVASEMIV---VGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQLLFRP 262
           FVV  + I+   + D VI   G  S   +A   Q LLA +   L  L + F  D   FRP
Sbjct: 511 FVVEHDFIMATYLADRVIVFEGQPSVNTVANSPQSLLAGMNRFLKNLDITFRRDPNNFRP 570

Query: 263 MI--VWSNKFRLERTTGIY 279
            I  + S K   ++ +G Y
Sbjct: 571 RINKLDSQKDVEQKKSGQY 589


>gnl|CDD|31371 COG1178, ThiP, ABC-type Fe3+ transport system, permease component
           [Inorganic ion transport and metabolism].
          Length = 540

 Score = 34.8 bits (80), Expect = 0.063
 Identities = 33/176 (18%), Positives = 73/176 (41%), Gaps = 10/176 (5%)

Query: 22  LLAFVLVIGIINILLHGIQETTVPRDIVDIVPITLDVHSLPQYASRTTLRMLSAMVISLL 81
           LL F++++ ++ ++L               + + L      Q    + L  L+A +++++
Sbjct: 297 LLLFLILLPLLAVVLPSFVLNWGR-----PLSLVLASPQFWQALLNSLLLALAAALLAVV 351

Query: 82  FTFVYATLAAKSR-RLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVIGAELAAIF 140
              + A    + R RL  +L  +  +  ++P +  L   ++       G +       + 
Sbjct: 352 LALLLAYAVRRLRSRLSRLLERLSMLPLAVPGV-VLALGLLLLFRAPDGLLYQPLYTLLI 410

Query: 141 AIFTSQVWNMTF---SMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLV 193
            +    +  + F   S+  +L  I   LEE +RS   SG ++F  + +P   PGL+
Sbjct: 411 LVLAYALRFLPFAVRSLRAALRQIDPSLEEAARSLGASGLRRFRRITLPLLRPGLL 466



 Score = 32.5 bits (74), Expect = 0.31
 Identities = 29/146 (19%), Positives = 57/146 (39%), Gaps = 14/146 (9%)

Query: 61  LPQYASRTTLRMLSAMVISLLFTFVYATLAAKS-----RRLGMVLVPILDIMQSIPILGF 115
           L +  + T +  +   ++S++     A L ++      R L  +L   L I   +  L +
Sbjct: 54  LWRVLANTLILAVLVTLLSVVLGIPLAWLLSRYDFPGRRLLRWLLALPLVIPPFVVALAW 113

Query: 116 LTFTVVYFMNLYPGKVIGAELAAIFAIFTSQVWNMTFSMY--------QSLCNIPRDLEE 167
           ++            +++G E  +I+      +  + F  Y         +L  IP  LEE
Sbjct: 114 ISLFGPSGPLAALLELLGFESPSIYG-LGGILLALVFFNYPLAYLLVLAALETIPPSLEE 172

Query: 168 VSRSFRLSGWQKFWYLGVPFSMPGLV 193
            +R+   S WQ F  + +P   P + 
Sbjct: 173 AARTLGASRWQVFRKVTLPLLRPAIA 198


>gnl|CDD|30918 COG0573, PstC, ABC-type phosphate transport system, permease
           component [Inorganic ion transport and metabolism].
          Length = 310

 Score = 34.8 bits (80), Expect = 0.075
 Identities = 29/148 (19%), Positives = 63/148 (42%), Gaps = 14/148 (9%)

Query: 68  TTLRMLSAMVISL---LFTFVYATLAAKSRRLGMVLVPILDIMQSIP--ILGFLTFTVV- 121
           T +  L A++I++   + T ++ +  A  RRL  VL P ++++  IP  + GF    V+ 
Sbjct: 84  TLITSLIALLIAVPVGIGTAIFLSEYAPPRRLRRVLKPAIELLAGIPSVVYGFFGLFVLA 143

Query: 122 --------YFMNLYPGKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFR 173
                     +    G    + L A   +    +  +      +L  +PR L E + +  
Sbjct: 144 PFLRDVFGPPLGFNLGPFGISILTAGIVLAIMILPTIASLSRDALRAVPRSLREAAYALG 203

Query: 174 LSGWQKFWYLGVPFSMPGLVWNMMMSMS 201
            + W+    + +P +  G+V  +++ + 
Sbjct: 204 ATKWETIRKVILPAARSGIVGAVILGLG 231



 Score = 27.9 bits (62), Expect = 7.3
 Identities = 34/149 (22%), Positives = 51/149 (34%), Gaps = 22/149 (14%)

Query: 391 VVLIIIASIIWIPVGIWIGF-------RPHISSKIQPFAQLLAAFPANV----------- 432
           ++  +IA +I +PVGI              +   ++P  +LLA  P+ V           
Sbjct: 85  LITSLIALLIAVPVGIGTAIFLSEYAPPRRLRRVLKPAIELLAGIPSVVYGFFGLFVLAP 144

Query: 433 FFPLVVSCVSYYHLNPNLWLSLLMIFGTQWYILFNVIA----GASAFPNDFKEVASSFHI 488
           F   V      ++L P     L         IL  + +       A P   +E A +   
Sbjct: 145 FLRDVFGPPLGFNLGPFGISILTAGIVLAIMILPTIASLSRDALRAVPRSLREAAYALGA 204

Query: 489 TGWRWWRYIILPGIFPYYVTGAITACGGA 517
           T W   R +ILP      V   I   G A
Sbjct: 205 TKWETIRKVILPAARSGIVGAVILGLGRA 233


>gnl|CDD|31369 COG1176, PotB, ABC-type spermidine/putrescine transport system,
           permease component I [Amino acid transport and
           metabolism].
          Length = 287

 Score = 34.8 bits (80), Expect = 0.077
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 150 MTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLV 193
           M   +Y +L  I   L E +R    S +Q F  + +P S+PG++
Sbjct: 168 MILPLYAALEKIDPSLLEAARDLGASPFQTFRRVILPLSLPGII 211


>gnl|CDD|31366 COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport
           systems, permease components [Amino acid transport and
           metabolism / Inorganic ion transport and metabolism].
          Length = 289

 Score = 32.9 bits (75), Expect = 0.23
 Identities = 34/152 (22%), Positives = 60/152 (39%), Gaps = 17/152 (11%)

Query: 374 QDVLYVIWLGCITMFRVVVLI-IIASIIWIPVGIWIG-----FRPHISSKIQPFAQLLAA 427
           +D+L  +  G     R+ +LI ++A +I + +G  +G     F   +   +     +  A
Sbjct: 75  RDILSRLLYG----ARISLLIGLLAVLISLVIGTLLGLLAGYFGGWVDRVLMRITDIFLA 130

Query: 428 FPANVFFPLVVSCVSYYHLNPNLWLSLLMIFGTQWYILFNVIAGA--SAFPNDFKEVASS 485
           FP      L +  V+   L P L   +L +    W     ++ G   S    ++ E A +
Sbjct: 131 FP---SLLLAILLVAI--LGPGLLNLILALALVGWPGYARIVRGQVLSLREREYVEAARA 185

Query: 486 FHITGWRWWRYIILPGIFPYYVTGAITACGGA 517
              +  R     ILP + P  +  A    GGA
Sbjct: 186 LGASTLRIIFRHILPNVLPPLIVLATLDIGGA 217



 Score = 29.1 bits (65), Expect = 3.8
 Identities = 45/211 (21%), Positives = 77/211 (36%), Gaps = 17/211 (8%)

Query: 57  DVHSLPQYASRTTLRM-LSAMVISLLFTFVYATLAA-KSRRLGMVLVPILDIMQSIPILG 114
           D+ S   Y +R +L + L A++ISL+   +   LA      +  VL+ I DI  + P L 
Sbjct: 76  DILSRLLYGARISLLIGLLAVLISLVIGTLLGLLAGYFGGWVDRVLMRITDIFLAFPSLL 135

Query: 115 FLTFTVVYFMNLYPGKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRL 174
                V        G  +   + A+  +       +      SL    R+  E +R+   
Sbjct: 136 LAILLVAIL-----GPGLLNLILALALVGWPGYARIVRGQVLSLRE--REYVEAARALGA 188

Query: 175 SGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIK 234
           S  +  +   +P  +P L+    + + G          + +G    P P  G+ +A    
Sbjct: 189 STLRIIFRHILPNVLPPLIVLATLDIGGAILAEAGLSFLGLGVQ-PPTPSWGTMLAEGRN 247

Query: 235 E-------QDLLAILYAMLTMLGVIFLYDQL 258
                     L   L  +LT+L    L D L
Sbjct: 248 YLLTGAWWLVLFPGLAILLTVLAFNLLGDGL 278


>gnl|CDD|36462 KOG1248, KOG1248, KOG1248, Uncharacterized conserved protein
           [Function unknown].
          Length = 1176

 Score = 33.0 bits (75), Expect = 0.24
 Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 14/108 (12%)

Query: 73  LSAMVISLLFTFVYATLAAKSRRLGMV-LVPIL-DIMQSIPILGFLTFTVVYFMNLYPGK 130
           + AM    + T +   L A+S       L+P+L D +    +  F  + V   M+L   K
Sbjct: 419 VRAMGPERVLTILPLNLHAESLSFTRSWLLPVLRDYIIGASLAFFTEYIVPLAMSLQL-K 477

Query: 131 VIGAELA----AIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRL 174
               + A    +++     Q+W    S+    CN P DL E   SF  
Sbjct: 478 AKKLKEAGSQVSLYDTLVDQLW----SLLPGFCNYPVDLAE---SFTD 518


>gnl|CDD|30901 COG0555, CysU, ABC-type sulfate transport system, permease
           component [Posttranslational modification, protein
           turnover, chaperones].
          Length = 274

 Score = 30.9 bits (70), Expect = 1.0
 Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 1/133 (0%)

Query: 122 YFMNLYPGKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFW 181
             +     K     L  I A+F   +  +  ++   L  I R+ EE +RS   S  Q F 
Sbjct: 126 SLLAPLGIKFAFTPLGVIVAMFFVSLPFVVRTVQPVLEEIDREYEEAARSLGASPLQTFR 185

Query: 182 YLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLAI 241
            + +P  +P L+   ++S +        + +I+ G+T      +   I   ++  DL A 
Sbjct: 186 RVILPLLLPALLAGFILSFARS-IGEFGAVLIIAGNTPYKTETLPLLIYTRLESYDLEAA 244

Query: 242 LYAMLTMLGVIFL 254
               + +L + F+
Sbjct: 245 AAISVVLLLISFI 257



 Score = 28.2 bits (63), Expect = 6.7
 Identities = 18/90 (20%), Positives = 38/90 (42%)

Query: 424 LLAAFPANVFFPLVVSCVSYYHLNPNLWLSLLMIFGTQWYILFNVIAGASAFPNDFKEVA 483
           LL  F  N     +++ +        L + + M F +  +++  V         +++E A
Sbjct: 114 LLLLFGPNGLLGSLLAPLGIKFAFTPLGVIVAMFFVSLPFVVRTVQPVLEEIDREYEEAA 173

Query: 484 SSFHITGWRWWRYIILPGIFPYYVTGAITA 513
            S   +  + +R +ILP + P  + G I +
Sbjct: 174 RSLGASPLQTFRRVILPLLLPALLAGFILS 203


>gnl|CDD|31370 COG1177, PotC, ABC-type spermidine/putrescine transport system,
           permease component II [Amino acid transport and
           metabolism].
          Length = 267

 Score = 30.5 bits (69), Expect = 1.2
 Identities = 35/185 (18%), Positives = 71/185 (38%), Gaps = 7/185 (3%)

Query: 72  MLSAMVISLLFTFVYATLAAKSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKV 131
            L A ++  L     A    + + L   L+ +  ++  I + G     +   + L  G  
Sbjct: 78  ALLATLLGTLAALALARYRFRGKNLLEGLILLPLVVPDI-VTGIALLLLFAALGLPGGF- 135

Query: 132 IGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPG 191
                  + A     +  +   +   L    R LEE +R    S WQ F  + +P  +PG
Sbjct: 136 ----WTIVLAHIVFALPFVVVVVSARLQGFDRSLEEAARDLGASPWQTFRRVTLPLILPG 191

Query: 192 LVWNMMMSMSGGW-FFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLG 250
           ++   +++ +  +  FV+   +   G T +PL            E + L+ L  +L++L 
Sbjct: 192 ILSGALLAFTLSFDEFVITFFLAGPGFTTLPLQIYSMIRRGITPEINALSTLLLLLSLLL 251

Query: 251 VIFLY 255
           ++   
Sbjct: 252 ILLAS 256



 Score = 28.2 bits (63), Expect = 5.9
 Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 6/114 (5%)

Query: 463 YILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASI 522
           +++  V A    F    +E A     + W+ +R + LP I P  ++GA+ A   +++  +
Sbjct: 149 FVVVVVSARLQGFDRSLEEAARDLGASPWQTFRRVTLPLILPGILSGALLAFTLSFDEFV 208

Query: 523 VSEVASWGHIHLRTTGLGAYIAESTEKGSFPEV--VLGVLIMCCFVLALNRFLW 574
           ++   +        T L   I     +G  PE+  +  +L++   +L L     
Sbjct: 209 ITFFLAGP----GFTTLPLQIYSMIRRGITPEINALSTLLLLLSLLLILLASRL 258


>gnl|CDD|33626 COG3833, MalG, ABC-type maltose transport systems, permease
           component [Carbohydrate transport and metabolism].
          Length = 282

 Score = 30.5 bits (69), Expect = 1.4
 Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 7/143 (4%)

Query: 69  TLRMLSAMVISLLFTFVYATLAAKSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYP 128
            +     + +  L  + ++    K R+  +    IL   Q  P  G      +Y + L  
Sbjct: 83  LITAAITVALVTLAAYAFSRYRFKGRKYLLKFFLIL---QMFP--GVAALIALYVL-LKL 136

Query: 129 GKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFS 188
             ++      I A     +   T+ +      IP+ L+E ++    + +Q F  + +P S
Sbjct: 137 LGLLNTLWGLILAYLGGAIPMNTWLIKGYFDTIPKSLDEAAKIDGATRFQIFRRILLPLS 196

Query: 189 MPGLVWNMMMSMSGGWF-FVVAS 210
            P L    +++  G +  F++AS
Sbjct: 197 KPILAVVALLAFIGPFGDFILAS 219


>gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase
           L inhibitor.  The ABC ATPase, RNase L inhibitor (RLI),
           is a key enzyme in ribosomal biogenesis, formation of
           translation preinitiation complexes, and assembly of HIV
           capsids.  RLI's are not transport proteins and thus
           cluster with a group of soluble proteins that lack the
           transmembrane components commonly found in other members
           of the family.  Structurally, RLI's have an N-terminal
           Fe-S domain and two nucleotide-binding domains which are
           arranged to form two composite active sites in their
           interface cleft.  RLI is one of the most conserved
           enzymes between archaea and eukaryotes with a sequence
           identity of more than 48%.  The high degree of
           evolutionary conservation suggests that RLI performs a
           central role in archaeal and eukaryotic physiology..
          Length = 246

 Score = 30.3 bits (68), Expect = 1.4
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 206 FVVASEMIV---VGDTVIPLPGIGSYIALAIKEQDLLAILYAMLTMLGVIFLYDQLLFRP 262
           FVV  ++I+   + D +I   G  S   +A   Q L + +   L  L + F  D    RP
Sbjct: 170 FVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLRSGMNRFLKNLDITFRRDPETGRP 229

Query: 263 MIVWSNKF 270
            I   NK 
Sbjct: 230 RI---NKL 234


>gnl|CDD|31368 COG1175, UgpA, ABC-type sugar transport systems, permease
           components [Carbohydrate transport and metabolism].
          Length = 295

 Score = 30.2 bits (68), Expect = 1.6
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 138 AIFAIFTSQVWNMT-FSM---YQSLCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLV 193
           A+FA+    VW  T F M      L +IP++L E +R    S WQ+F  + +P   P + 
Sbjct: 157 ALFAVIIVSVWKGTGFVMLLFLAGLQSIPKELYEAARIDGASPWQRFRKITLPLLRPVIF 216

Query: 194 WNMMMSMSGGW 204
           + +++     +
Sbjct: 217 FVLILRTIFAF 227


>gnl|CDD|34663 COG5058, LAG1, Protein transporter of the TRAM (translocating
           chain-associating membrane) superfamily, longevity
           assurance factor [Intracellular trafficking and
           secretion].
          Length = 395

 Score = 30.3 bits (68), Expect = 1.7
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 380 IWLGCITMFRVVVLIIIASIIWIPVGIWIGFRPHISSKIQPFAQLLAAFPANVFFPLVVS 439
            +L        +  ++   I  I V IWI  R +++ KI     +L AF     F L V+
Sbjct: 271 FFLSLSKTLNYLNSVLATFIFGIFVFIWIYSRHYLNLKI--LWSVLTAFRTIGNFVLDVA 328

Query: 440 CVSYYHLNPNLWLSLLMIFGTQWYILF 466
               Y    +L +  +++   Q   ++
Sbjct: 329 -TQQYKCWISLPIVFILLQALQLVNIY 354


>gnl|CDD|100034 cd02203, PurL_repeat1, PurL subunit of the formylglycinamide
           ribonucleotide amidotransferase (FGAR-AT), first repeat.
           FGAR-AT catalyzes the ATP-dependent conversion of
           formylglycinamide ribonucleotide (FGAR) and glutamine to
           formylglycinamidine ribonucleotide (FGAM), ADP,
           phosphate, and glutamate in the fourth step of the
           purine biosynthetic pathway. In eukaryotes and
           Gram-negative bacteria, FGAR-AT is encoded by the purL
           gene as a multidomain protein with a molecular mass of
           about 140 kDa. In Gram-positive bacteria and archaea
           FGAR-AT is a complex of three proteins: PurS, PurL, and
           PurQ. PurL itself contains two tandem N- and C-terminal
           domains (four domains altogether). The N-terminal
           domains bind ATP and are related to the ATP-binding
           domains of HypE, ThiL, SelD and PurM..
          Length = 313

 Score = 28.6 bits (65), Expect = 4.5
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 12/51 (23%)

Query: 510 AITACGGAWNASIVSEVASWG---------HIHLRTTGLGAY---IAESTE 548
            I   G    +S VSE+A+ G          + LR  G+  +   I+ES E
Sbjct: 214 GIQDLGAGGLSSAVSEMAAKGGLGAEIDLDKVPLREPGMSPWEIWISESQE 264


>gnl|CDD|176544 cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester phosphodiesterase
           domain of Streptomycin coelicolor (GlpQ1) and similar
           proteins.  This subfamily corresponds to the
           glycerophosphodiester phosphodiesterase domain (GDPD)
           present  in a group of putative bacterial and eukaryotic
           glycerophosphodiester phosphodiesterases (GP-GDE, EC
           3.1.4.46) similar to Escherichia coli periplasmic
           phosphodiesterase GlpQ, as well as plant
           glycerophosphodiester phosphodiesterases (GP-PDEs), all
           of which catalyzes the Ca2+-dependent degradation of
           periplasmic glycerophosphodiesters to produce
           sn-glycerol-3-phosphate (G3P) and the corresponding
           alcohols. The prototypes of this family include putative
           secreted phosphodiesterase encoded by gene glpQ1
           (SCO1565) from the pho regulon in Streptomyces
           coelicolor genome, and in plants, two distinct
           Arabidopsis thaliana genes, AT5G08030 and AT1G74210,
           coding putative GP-PDEs from the cell walls and
           vacuoles, respectively.
          Length = 309

 Score = 28.8 bits (65), Expect = 4.8
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 55  TLDVHSLPQYASRTTLRMLSAMVISLLFT--FVYA---TLAAKSRR 95
           T DV   P++A R T + +  + ++  FT  F  A   TL A+ R 
Sbjct: 55  TTDVADHPEFADRKTTKTVDGVNVTGWFTEDFTLAELKTLRARQRL 100


>gnl|CDD|133464 cd06854, GT_WbpL_WbcO_like, The members of this subfamily catalyze
           the formation of a phosphodiester bond between a
           membrane-associated undecaprenyl-phosphate (Und-P)
           molecule and N-acetylhexosamine 1-phosphate, which is
           usually donated by a soluble UDP-N-acetylhexosamine
           precursor. The WbcO/WbpL substrate specificity has not
           yet been determined, but the structure of their
           biosynthetic end products implies that
           UDP-N-acetyl-D-fucosamine (UDP-FucNAc) and/or
           UDPN-acetyl-D-quinosamine (UDP-QuiNAc) are used. The
           subgroup of bacterial UDP-HexNAc:polyprenol-P HexNAc-1-P
           transferases includes the WbcO protein from Yersinia
           enterocolitica and the WbpL protein from Pseudomonas
           aeruginosa. These transferases initiate LPS O-antigen
           biosynthesis. Similar to other GlcNAc/MurNAc-1-P
           transferase family members, WbpL is a highly hydrophobic
           protein possessing 11 predicted transmembrane segments.
          Length = 253

 Score = 28.4 bits (64), Expect = 6.0
 Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 10/97 (10%)

Query: 379 VIWLGCITMFRVVVLIIIASIIWIPVGIW----IGF---RPHISSKIQPFAQLLAAFPAN 431
           + +L  + +      +   S + + +G+     +GF      +S KI+   QLLAA  A 
Sbjct: 25  LAFLLALLLAAAAGPLNDLSYLLLLIGLLLLAAVGFIDDLRSLSPKIRLLVQLLAAALAL 84

Query: 432 VFFPLVVSCVSYYHLNPNLWLSLLMIFGTQWYI-LFN 467
                + S     +  P   ++LL++    W I L+N
Sbjct: 85  YALGPLTS--LLLNFLPPWLIALLLLLAIVWIINLYN 119


>gnl|CDD|33937 COG4208, CysW, ABC-type sulfate transport system, permease
           component [Inorganic ion transport and metabolism].
          Length = 287

 Score = 27.9 bits (62), Expect = 7.0
 Identities = 34/154 (22%), Positives = 67/154 (43%), Gaps = 21/154 (13%)

Query: 62  PQYASRTTLRMLSAMV---ISLLFTFVYATLAAKSRRLG-MVLVPILDIMQSI-PILGFL 116
           P   S   L +L A++   ++++F    A   A+    G  +L+ ++D+  S+ P++  L
Sbjct: 61  PDALSAIKLTLLVALIAVPLNVVFGVAAAWAIARFEFPGKALLLTLIDLPFSVSPVVAGL 120

Query: 117 TFTVVYFMNLYPGKVI------------GAELAAIFAIFTSQVWNMTFSMYQSLCNIPRD 164
            + +++  N + G  +            G  LA IF         +   M +       D
Sbjct: 121 VYVLLFGSNGWLGGWLEAHDIQIIFAVPGIVLATIFVTCPFVARELIPLMQEQ----GTD 176

Query: 165 LEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMM 198
            EE + +   SGWQ FW + +P    GL++ +++
Sbjct: 177 EEEAALTLGASGWQTFWRVTLPNIRWGLLYGVVL 210


>gnl|CDD|144450 pfam00858, ASC, Amiloride-sensitive sodium channel. 
          Length = 441

 Score = 28.2 bits (63), Expect = 7.1
 Identities = 5/28 (17%), Positives = 10/28 (35%)

Query: 346 IFWFCVVCGVAIGIAWQSIGYIVNHFTY 373
           +FW  V       + +Q       + +Y
Sbjct: 24  VFWLLVFLVSLGLLIYQIGNLYEKYLSY 51


>gnl|CDD|164564 CHL00187, cysT, sulfate transport protein; Provisional.
          Length = 237

 Score = 27.7 bits (62), Expect = 8.4
 Identities = 48/209 (22%), Positives = 87/209 (41%), Gaps = 28/209 (13%)

Query: 10  FISRRIFPNIFDL--LAFVLVIGIINILLHGIQETTVPRDIVDIVPITLDVHSLPQYASR 67
           F  +     I  L  + F+LV+ I+ +L+   Q+        D +    +   +   A  
Sbjct: 6   FSLKFSSIYIISLSYIIFLLVLPILALLIKASQQ-----PWSDFLQKATE--PIALSAYS 58

Query: 68  TTLRM-LSAMVISLLFTFVYATLAAKSRRLGM-VLVPILDIMQSIP-ILGFLTFTVVY-- 122
            TL M L A +I+  F  + A +  +    G  +L   +D+  ++P  +  LT   VY  
Sbjct: 59  LTLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATVYGD 118

Query: 123 ------FMNLYPGKV----IGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSF 172
                  ++    ++    +G  LA IF  F      +  ++   L  I ++LEE + S 
Sbjct: 119 NGWIGHLLSHLGIQIVFTKLGVLLAMIFVSFPF----VVRTIQPVLQEIEKELEEAAWSL 174

Query: 173 RLSGWQKFWYLGVPFSMPGLVWNMMMSMS 201
             S WQ FW +  P  +P L+  + ++ S
Sbjct: 175 GASPWQTFWKVIFPPLIPALLTGLALTFS 203


>gnl|CDD|35442 KOG0221, KOG0221, KOG0221, Mismatch repair ATPase MSH5 (MutS
           family) [Replication, recombination and repair].
          Length = 849

 Score = 27.7 bits (61), Expect = 9.4
 Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 24/106 (22%)

Query: 21  DLLAFVLVIGIINILLHGIQETTVPRDIVDIVPITLDVHSLPQYASRTTLRMLSAMVISL 80
            L A   ++ + +I+      T    D   I  +  D+ ++ +                 
Sbjct: 158 ALTATEKILFLSSIIPFDCLLT--EEDKYIITKMRFDIEAVVR----------------- 198

Query: 81  LFTFVYATLAAKSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNL 126
                        RR+G+ L        S+PILG   F + + +N+
Sbjct: 199 --ALGGLLKFLGRRRIGVELEDY---NVSVPILGIKKFMLTHLVNI 239


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.332    0.145    0.480 

Gapped
Lambda     K      H
   0.267   0.0707    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 8,007,898
Number of extensions: 470572
Number of successful extensions: 1941
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1897
Number of HSP's successfully gapped: 171
Length of query: 587
Length of database: 6,263,737
Length adjustment: 99
Effective length of query: 488
Effective length of database: 4,124,446
Effective search space: 2012729648
Effective search space used: 2012729648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 60 (26.9 bits)