BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|255764497|ref|YP_003065010.2| ABC transporter permease
[Candidatus Liberibacter asiaticus str. psy62]
(587 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|255764497|ref|YP_003065010.2| ABC transporter permease [Candidatus Liberibacter asiaticus str.
psy62]
Length = 587
Score = 1186 bits (3067), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 587/587 (100%), Positives = 587/587 (100%)
Query: 1 MFLYNILPPFISRRIFPNIFDLLAFVLVIGIINILLHGIQETTVPRDIVDIVPITLDVHS 60
MFLYNILPPFISRRIFPNIFDLLAFVLVIGIINILLHGIQETTVPRDIVDIVPITLDVHS
Sbjct: 1 MFLYNILPPFISRRIFPNIFDLLAFVLVIGIINILLHGIQETTVPRDIVDIVPITLDVHS 60
Query: 61 LPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLGMVLVPILDIMQSIPILGFLTFTV 120
LPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLGMVLVPILDIMQSIPILGFLTFTV
Sbjct: 61 LPQYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLGMVLVPILDIMQSIPILGFLTFTV 120
Query: 121 VYFMNLYPGKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKF 180
VYFMNLYPGKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKF
Sbjct: 121 VYFMNLYPGKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKF 180
Query: 181 WYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLA 240
WYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLA
Sbjct: 181 WYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLA 240
Query: 241 ILYAMLTMLGVIFLYDQLLFRPMIVWSNKFRLERTTGIYPADSWVLYLFRKTNFLRFIGY 300
ILYAMLTMLGVIFLYDQLLFRPMIVWSNKFRLERTTGIYPADSWVLYLFRKTNFLRFIGY
Sbjct: 241 ILYAMLTMLGVIFLYDQLLFRPMIVWSNKFRLERTTGIYPADSWVLYLFRKTNFLRFIGY 300
Query: 301 SSWNFFSPLSNNVKKLCRTLGVIRFHFPENFLQLCSNQRVSYMLDIFWFCVVCGVAIGIA 360
SSWNFFSPLSNNVKKLCRTLGVIRFHFPENFLQLCSNQRVSYMLDIFWFCVVCGVAIGIA
Sbjct: 301 SSWNFFSPLSNNVKKLCRTLGVIRFHFPENFLQLCSNQRVSYMLDIFWFCVVCGVAIGIA 360
Query: 361 WQSIGYIVNHFTYQDVLYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRPHISSKIQP 420
WQSIGYIVNHFTYQDVLYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRPHISSKIQP
Sbjct: 361 WQSIGYIVNHFTYQDVLYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRPHISSKIQP 420
Query: 421 FAQLLAAFPANVFFPLVVSCVSYYHLNPNLWLSLLMIFGTQWYILFNVIAGASAFPNDFK 480
FAQLLAAFPANVFFPLVVSCVSYYHLNPNLWLSLLMIFGTQWYILFNVIAGASAFPNDFK
Sbjct: 421 FAQLLAAFPANVFFPLVVSCVSYYHLNPNLWLSLLMIFGTQWYILFNVIAGASAFPNDFK 480
Query: 481 EVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGHIHLRTTGLG 540
EVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGHIHLRTTGLG
Sbjct: 481 EVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGHIHLRTTGLG 540
Query: 541 AYIAESTEKGSFPEVVLGVLIMCCFVLALNRFLWHPLYLYGTRCLRL 587
AYIAESTEKGSFPEVVLGVLIMCCFVLALNRFLWHPLYLYGTRCLRL
Sbjct: 541 AYIAESTEKGSFPEVVLGVLIMCCFVLALNRFLWHPLYLYGTRCLRL 587
>gi|254780341|ref|YP_003064754.1| proline/glycine betaine ABC transporter, permease protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 281
Score = 33.1 bits (74), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 69/152 (45%), Gaps = 10/152 (6%)
Query: 63 QYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLGMVLVPILDIMQSIPILGFLTFTVVY 122
Q + T +L + IS+ LAA R ++ LD MQ+IP +L +V
Sbjct: 91 QETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVL 150
Query: 123 F-MNLYPGKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFW 181
F + + PG V +F+I TS + + P L+E + +F + +Q F
Sbjct: 151 FGLGMVPGIVA----TIVFSIPTSVRLT-----RLGIISTPPILKEAACAFGATPFQVFR 201
Query: 182 YLGVPFSMPGLVWNMMMSMSGGWFFVVASEMI 213
+ +PF++P +V ++ ++ VV + ++
Sbjct: 202 KVELPFAIPQIVASLTQTIMLSLSMVVVTALV 233
>gi|254780392|ref|YP_003064805.1| leucyl aminopeptidase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 494
Score = 30.0 bits (66), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 46/116 (39%), Gaps = 19/116 (16%)
Query: 445 HLNPNLWLSLLMIFGTQWYILFNVIAGASAFPNDF--KEVASSFHITGWRWWRYIILPGI 502
H NP+L + L + G L N+ AG A ND +++ SS TG WR +P
Sbjct: 359 HYNPHLMIDLATLTGAMVVSLGNIYAGLFA-NNDVLAEQLLSSGLSTGELLWR---MPMN 414
Query: 503 FPYYVT-----GAITACGGAWNASIVS--------EVASWGHIHLRTTGLGAYIAE 545
Y + GG SIV+ + ASW HI + G Y E
Sbjct: 415 EEYNKLIESKFADMKNIGGRGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPKE 470
>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 597
Score = 28.1 bits (61), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Query: 174 LSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAI 233
L +K W P+ P W++ + + G F V+AS+ +++G +P + ++ ++
Sbjct: 9 LRTLKKLW----PYMWPANRWDLKVRIIGAMFSVIASKFVILG-----IPFLLKWVTESL 59
Query: 234 KEQDLLAILYAMLTMLGVIFLYDQLLFRPMIVWSNKFR 271
EQ + + LT+ VI + R + + SN R
Sbjct: 60 IEQSTASKTTSYLTIGIVILITSYGTMRVVNLISNHIR 97
>gi|254780231|ref|YP_003064644.1| hypothetical protein CLIBASIA_00580 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 98
Score = 25.8 bits (55), Expect = 1.9, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 26 VLVIGIINILLHGIQETTVPRDIVDIVPITLDVHSLPQ--YASRTTLRMLS 74
V+V I N GI +P+D D + + + V + PQ A++ L ML+
Sbjct: 4 VIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLA 54
>gi|255764486|ref|YP_003065119.2| ABC transporter, membrane spanning protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 493
Score = 25.0 bits (53), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 158 LCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVV 215
+ +IPR L + S + + Y+ P + PG+ ++M+ S + MIVV
Sbjct: 368 ISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASR----TIGETMIVV 421
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.332 0.145 0.480
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 384,626
Number of Sequences: 1233
Number of extensions: 16074
Number of successful extensions: 68
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 57
Number of HSP's gapped (non-prelim): 11
length of query: 587
length of database: 328,796
effective HSP length: 79
effective length of query: 508
effective length of database: 231,389
effective search space: 117545612
effective search space used: 117545612
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 41 (20.4 bits)