HHsearch alignment for GI: 255764498 and conserved domain: PHA00730

>PHA00730 int integrase.
Probab=98.44  E-value=2.2e-06  Score=56.38  Aligned_cols=199  Identities=23%  Similarity=0.334  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99999997544998688999999999999997799843532210112334321000122222212222121222111223
Q gi|255764498|r   20 LKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPSDTLELPKKNHILPKT   99 (300)
Q Consensus        20 l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np~~~i~~~k~~~~~~~~   99 (300)
T Consensus        98 ~~effe~~l~~----k~ise~T~K~Yv~~l~k-p~~~--sn~~~kA~r~f~~~~~~r~-----~~~~lK~kK-~~pDl~V  164 (322)
T PHA00730         98 NSEFFELTLRQ----RKISEKTIKDYINCIKQ-PRKE--SNNCIKAYRLFYRFLLNRD-----PPKELKVKK-TKPDLRI  164 (322)
T ss_pred             HHHHHHHHHHH----CCCCHHHHHHHHHHHHH-HHHH--HHHHHHHHHHHHHHHHCCC-----CHHHHHHCC-CCCCCCC
T ss_conf             89999999875----26768899999999875-6554--0214999999999972246-----377652203-6886247


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCH-----HHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf             3202469999864320012561027765431100012210013433343200-----00011110001112221111100
Q gi|255764498|r  100 LHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSA-----HTLNLTERTMIIQGKGNKERLVI  174 (300)
Q Consensus       100 ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~-----~di~~~~~~i~v~~K~~k~R~ip  174 (300)
T Consensus       165 PT~eeVk~tL~~~key-~----------~vy~vYrllLESG~RlsEaLkvLn~y~p~~dv~-e~~~~~y----------~  222 (322)
T PHA00730        165 PTLEEIKRTLQLVKEY-E----------NLYLLYRLLLESGSRLSEALKVLNNYNPQNDIR-EDGFSIY----------I  222 (322)
T ss_pred             CCHHHHHHHHHHHCCC-C----------CHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHCC-CCCEEEE----------E
T ss_conf             8889999999875047-6----------414689999871302899999974148054303-5876999----------8


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             001247887532321001246777520012333-2222211111110123442014667642598858899999998588
Q gi|255764498|r  175 LSPSALHALQMYKKTCSSMKMTGNDLWLFPSST-KTGHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLLEGGA  253 (300)
Q Consensus       175 i~~~~~~~l~~y~~~~~~~~~~~~~~~lf~~~~-~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~~~G~  253 (300)
T Consensus       223 L-----~w~R----------g~K~~fy~fhit~Lk~~~It~~~i~~~~~~~----~----~v~~KYiRKfvatKm~elgi  279 (322)
T PHA00730        223 L-----NWTR----------GQKKSFYLFHITPLKQIKITKAYIDKYVRRL----N----LVPPKYIRKFVATKMLELGI  279 (322)
T ss_pred             E-----HHHC----------CCCCEEEEEEECCCEEEEECHHHHHHHHHCC----C----CCCHHHHHHHHHHHHHHHCC
T ss_conf             3-----2221----------6775699999425424566188886665404----6----68789999999999999689


Q ss_pred             CHHHHHHHHCCCCHHH-HHHHHHC
Q ss_conf             8889999855899899-8999645
Q gi|255764498|r  254 DLRTIQILLGHTDIST-TQIYTHL  276 (300)
Q Consensus       254 ~~~~v~~~lGH~s~~t-T~~Y~~~  276 (300)
T Consensus       280 p~dvvdFiqGR~p~~ilt~HY~dL  303 (322)
T PHA00730        280 PSEVVDFIQGRTPSRILTKHYLDL  303 (322)
T ss_pred             CHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             688999964788550468999999