HHsearch alignment for GI: 255764498 and conserved domain: PHA00730
>PHA00730 int integrase.
Probab=98.44 E-value=2.2e-06 Score=56.38 Aligned_cols=199 Identities=23% Similarity=0.334 Sum_probs=107.8
Q ss_pred HHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999997544998688999999999999997799843532210112334321000122222212222121222111223
Q gi|255764498|r 20 LKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPSDTLELPKKNHILPKT 99 (300)
Q Consensus 20 l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np~~~i~~~k~~~~~~~~ 99 (300)
T Consensus 98 ~~effe~~l~~----k~ise~T~K~Yv~~l~k-p~~~--sn~~~kA~r~f~~~~~~r~-----~~~~lK~kK-~~pDl~V 164 (322)
T PHA00730 98 NSEFFELTLRQ----RKISEKTIKDYINCIKQ-PRKE--SNNCIKAYRLFYRFLLNRD-----PPKELKVKK-TKPDLRI 164 (322)
T ss_pred HHHHHHHHHHH----CCCCHHHHHHHHHHHHH-HHHH--HHHHHHHHHHHHHHHHCCC-----CHHHHHHCC-CCCCCCC
T ss_conf 89999999875----26768899999999875-6554--0214999999999972246-----377652203-6886247
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCH-----HHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf 3202469999864320012561027765431100012210013433343200-----00011110001112221111100
Q gi|255764498|r 100 LHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSA-----HTLNLTERTMIIQGKGNKERLVI 174 (300)
Q Consensus 100 ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~-----~di~~~~~~i~v~~K~~k~R~ip 174 (300)
T Consensus 165 PT~eeVk~tL~~~key-~----------~vy~vYrllLESG~RlsEaLkvLn~y~p~~dv~-e~~~~~y----------~ 222 (322)
T PHA00730 165 PTLEEIKRTLQLVKEY-E----------NLYLLYRLLLESGSRLSEALKVLNNYNPQNDIR-EDGFSIY----------I 222 (322)
T ss_pred CCHHHHHHHHHHHCCC-C----------CHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHCC-CCCEEEE----------E
T ss_conf 8889999999875047-6----------414689999871302899999974148054303-5876999----------8
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 001247887532321001246777520012333-2222211111110123442014667642598858899999998588
Q gi|255764498|r 175 LSPSALHALQMYKKTCSSMKMTGNDLWLFPSST-KTGHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLLEGGA 253 (300)
Q Consensus 175 i~~~~~~~l~~y~~~~~~~~~~~~~~~lf~~~~-~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~~~G~ 253 (300)
T Consensus 223 L-----~w~R----------g~K~~fy~fhit~Lk~~~It~~~i~~~~~~~----~----~v~~KYiRKfvatKm~elgi 279 (322)
T PHA00730 223 L-----NWTR----------GQKKSFYLFHITPLKQIKITKAYIDKYVRRL----N----LVPPKYIRKFVATKMLELGI 279 (322)
T ss_pred E-----HHHC----------CCCCEEEEEEECCCEEEEECHHHHHHHHHCC----C----CCCHHHHHHHHHHHHHHHCC
T ss_conf 3-----2221----------6775699999425424566188886665404----6----68789999999999999689
Q ss_pred CHHHHHHHHCCCCHHH-HHHHHHC
Q ss_conf 8889999855899899-8999645
Q gi|255764498|r 254 DLRTIQILLGHTDIST-TQIYTHL 276 (300)
Q Consensus 254 ~~~~v~~~lGH~s~~t-T~~Y~~~ 276 (300)
T Consensus 280 p~dvvdFiqGR~p~~ilt~HY~dL 303 (322)
T PHA00730 280 PSEVVDFIQGRTPSRILTKHYLDL 303 (322)
T ss_pred CHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 688999964788550468999999