HHsearch alignment for GI: 255764498 and conserved domain: PRK01287
>PRK01287 xerC site-specific tyrosine recombinase XerC; Reviewed.
Probab=100.00 E-value=0 Score=444.51 Aligned_cols=287 Identities=31% Similarity=0.435 Sum_probs=258.6
Q ss_pred CHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC-CHHHCCHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 6466413899999999999999999754499-8688999999999999997------79984353221011233432100
Q gi|255764498|r 2 MSSERASSINTLSAYKRDLKEMQNFLNNKEI-SLSAASTNHLISYLNHLSQ------RKLVTSSQRRKISVIRQFYNFLC 74 (300)
Q Consensus 2 l~~~R~~S~~T~~~Y~~~l~~f~~~~~~~~~-~~~~i~~~~i~~~~~~l~~------~~~s~~T~~~~~~~l~~~~~~~~ 74 (300)
T Consensus 34 L~-er~~S~~Ti~aY~~dL~~F~~fl~~~g~~~~~~vt~~~l~~y~~~L~~~r~~~g~~ls~~T~~r~LsalrsFf~~l~ 112 (361)
T PRK01287 34 LQ-ERNWSERTLKVQTHHTYHFILWCEERGLYYAADVTRPVLERYQRYLYQYRKTNGEPLSQGTQRTQLTPLRVWFKWLT 112 (361)
T ss_pred HH-HCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99-83998999999999999999999984899937589999999999999865406887799999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHH
Q ss_conf 012222221222212122211122-3320246999986432001256102776543110001221001343334320000
Q gi|255764498|r 75 YEGLRKDNPSDTLELPKKNHILPK-TLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHT 153 (300)
Q Consensus 75 ~~~~~~~np~~~i~~~k~~~~~~~-~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~d 153 (300)
T Consensus 113 ~~~~i~~nP~~~i~~PK~~k~lP~~~Ls~~Ev~~LL~~~~-------~~~~~g~RDrAil~LLy~tGLRvsEl~~L~~~D 185 (361)
T PRK01287 113 KQNLILYNPAADIELPKLEKRLPRYILSIDETEAILAAPD-------PTTLQGLRDRALLELLWSTGIRRSELARLDLYD 185 (361)
T ss_pred HCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCC-------CCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCC
T ss_conf 8799353758763277765557776799999999984745-------588065999999999999377798887166646
Q ss_pred HHHHHHCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf 0111100011-1222111110000124788753232100124-6777520012333222221111111012344201466
Q gi|255764498|r 154 LNLTERTMII-QGKGNKERLVILSPSALHALQMYKKTCSSMK-MTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQ 231 (300)
Q Consensus 154 i~~~~~~i~v-~~K~~k~R~ipi~~~~~~~l~~y~~~~~~~~-~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~ 231 (300)
T Consensus 186 Id~~~~~i~v~~GKG~KeR~VPl~~~~~~~L~~Yl~~~r~~~~~~~~~~~lFvs~-~G~~ls~~~v~~~vk~~~~~agi~ 264 (361)
T PRK01287 186 VDGSRKTVTVRQGKGNKDRVVPLGERALVWLQRYLQQVRPQLIVNPDSGALFVAM-DGDGLQRNGITNLVGRYIRAAGIE 264 (361)
T ss_pred CCCCCCEEEEECCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECC-CCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 6788883887348887400202769999999999998617641278877521288-999587899999999999980899
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCHHHCCCCC
Q ss_conf 7642598858899999998588888999985589989989996459999999999828011100112
Q gi|255764498|r 232 KKNISPHIIRHAFASHLLEGGADLRTIQILLGHTDISTTQIYTHLLPDKLQKLVQDYHPLAKKEKKH 298 (300)
Q Consensus 232 ~~~~t~H~lRht~at~l~~~G~~~~~v~~~lGH~s~~tT~~Y~~~~~~~~~~~~~~~~p~~~~~~~~ 298 (300)
T Consensus 265 k-~~~pH~LRHTfAT~lL~~GadL~~VQelLGHasi~TTqiYtHv~~~~l~~v~~~~HP~~~~~~~~ 330 (361)
T PRK01287 265 K-KGACHLFRHAMATQMLENGADLRWIQAMLGHASLETTQIYTQVSIRHLQAVHASTHPAEQMADEK 330 (361)
T ss_pred C-CCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 9-99821059999999998699999999986899778999998479999999999819988898633