HHsearch alignment for GI: 255764498 and conserved domain: PRK09692

>PRK09692 integrase; Provisional.
Probab=99.98  E-value=1.8e-31  Score=202.34  Aligned_cols=258  Identities=20%  Similarity=0.233  Sum_probs=187.1

Q ss_pred             CCHHHHHHHHHHHHHH-HHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             3899999999999999-999754499868899999999999999779984353221011233432100012222221222
Q gi|255764498|r    8 SSINTLSAYKRDLKEM-QNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPSDT   86 (300)
Q Consensus         8 ~S~~T~~~Y~~~l~~f-~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np~~~   86 (300)
T Consensus       122 ~~~~~~~~~~r~le~~v~p~i--G~~~i~~I~~~di~~~l~~i~~rg-~~~~a~r~~~~l~~i~~~A~~~gli~~nP~~~  198 (413)
T PRK09692        122 VTEDYAEDIWRSLERDVFPAI--GDVSVTDIKAHTLVQAVQPVQARG-ALETVRRLCQRINEVMIYAQNTGLIDAVPSVN  198 (413)
T ss_pred             CCHHHHHHHHHHHHHHHHHHH--CCCCCCCCCHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             257799999999998887985--888410078999999987999739-89999999999999999999658644585434


Q ss_pred             CCCC--CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf             2121--22211122332024699998643200125610277654311000122100134333432000001111000111
Q gi|255764498|r   87 LELP--KKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQ  164 (300)
Q Consensus        87 i~~~--k~~~~~~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~  164 (300)
T Consensus       199 ~~~~~~~p~~~~~~~l~~~el~~l~~~l~~~~~~------~~~--~~~l~l~lLt~~R~~Ev~~arW~eiD~~~~~W~IP  270 (413)
T PRK09692        199 IGKAFEKPQKKNMPSIRPDQLPQLMQTMRTASIS------LST--RCLFMWQLLTITRPAEAAEARWEEVDIEAQEWKIP  270 (413)
T ss_pred             HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC------HHH--HHHHHHHHHHCCCHHHHHCCCHHHEECCCCEEEEC
T ss_conf             3452568754577768989999999999857997------357--89999999972326877367799955788879975


Q ss_pred             ---CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHH
Q ss_conf             ---222111110000124788753232100124677752001233-3222221111111012344201466764259885
Q gi|255764498|r  165 ---GKGNKERLVILSPSALHALQMYKKTCSSMKMTGNDLWLFPSS-TKTGHLSRQVFARDLKALAARAGIQKKNISPHII  240 (300)
Q Consensus       165 ---~K~~k~R~ipi~~~~~~~l~~y~~~~~~~~~~~~~~~lf~~~-~~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~l  240 (300)
T Consensus       271 aer~K~~~~h~VPLs~qA~~iL~~l~------~~~~~~~~vFps~~~~~~~~s~~t~~~al~----~~~~~~-~~t~Hd~  339 (413)
T PRK09692        271 AARMKMNRDHTVPLSDEAIAILEMMK------PLSGNREFIFPSRIKPNQPMNSQTVNASLK----RAGFGG-VLVSHGL  339 (413)
T ss_pred             HHHCCCCCCCEECCCHHHHHHHHHHH------HHCCCCEEECCCCCCCCCCCCHHHHHHHHH----HCCCCC-CEECCCC
T ss_conf             68848988715278699999999999------861997698036999999788899999999----669999-7658484


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHCCCCHH-HHHHHHHCCH-HHHHHHHHH
Q ss_conf             8899999998588888999985589989-9899964599-999999998
Q gi|255764498|r  241 RHAFASHLLEGGADLRTIQILLGHTDIS-TTQIYTHLLP-DKLQKLVQD  287 (300)
Q Consensus       241 Rht~at~l~~~G~~~~~v~~~lGH~s~~-tT~~Y~~~~~-~~~~~~~~~  287 (300)
T Consensus       340 RrT~~T~l~e~g~~~~viE~~L~H~~~~~v~~~Ynr~~yl~eRr~~mq~  388 (413)
T PRK09692        340 RSIASTALNEQGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQW  388 (413)
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCHHHHHHHHHHHHHH
T ss_conf             5779998997699999999986899998289995677599999999999