HHsearch alignment for GI: 255764498 and conserved domain: PRK09692
>PRK09692 integrase; Provisional.
Probab=99.98 E-value=1.8e-31 Score=202.34 Aligned_cols=258 Identities=20% Similarity=0.233 Sum_probs=187.1
Q ss_pred CCHHHHHHHHHHHHHH-HHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 3899999999999999-999754499868899999999999999779984353221011233432100012222221222
Q gi|255764498|r 8 SSINTLSAYKRDLKEM-QNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPSDT 86 (300)
Q Consensus 8 ~S~~T~~~Y~~~l~~f-~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np~~~ 86 (300)
T Consensus 122 ~~~~~~~~~~r~le~~v~p~i--G~~~i~~I~~~di~~~l~~i~~rg-~~~~a~r~~~~l~~i~~~A~~~gli~~nP~~~ 198 (413)
T PRK09692 122 VTEDYAEDIWRSLERDVFPAI--GDVSVTDIKAHTLVQAVQPVQARG-ALETVRRLCQRINEVMIYAQNTGLIDAVPSVN 198 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHHH--CCCCCCCCCHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 257799999999998887985--888410078999999987999739-89999999999999999999658644585434
Q ss_pred CCCC--CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 2121--22211122332024699998643200125610277654311000122100134333432000001111000111
Q gi|255764498|r 87 LELP--KKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQ 164 (300)
Q Consensus 87 i~~~--k~~~~~~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~ 164 (300)
T Consensus 199 ~~~~~~~p~~~~~~~l~~~el~~l~~~l~~~~~~------~~~--~~~l~l~lLt~~R~~Ev~~arW~eiD~~~~~W~IP 270 (413)
T PRK09692 199 IGKAFEKPQKKNMPSIRPDQLPQLMQTMRTASIS------LST--RCLFMWQLLTITRPAEAAEARWEEVDIEAQEWKIP 270 (413)
T ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC------HHH--HHHHHHHHHHCCCHHHHHCCCHHHEECCCCEEEEC
T ss_conf 3452568754577768989999999999857997------357--89999999972326877367799955788879975
Q ss_pred ---CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHH
Q ss_conf ---222111110000124788753232100124677752001233-3222221111111012344201466764259885
Q gi|255764498|r 165 ---GKGNKERLVILSPSALHALQMYKKTCSSMKMTGNDLWLFPSS-TKTGHLSRQVFARDLKALAARAGIQKKNISPHII 240 (300)
Q Consensus 165 ---~K~~k~R~ipi~~~~~~~l~~y~~~~~~~~~~~~~~~lf~~~-~~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~l 240 (300)
T Consensus 271 aer~K~~~~h~VPLs~qA~~iL~~l~------~~~~~~~~vFps~~~~~~~~s~~t~~~al~----~~~~~~-~~t~Hd~ 339 (413)
T PRK09692 271 AARMKMNRDHTVPLSDEAIAILEMMK------PLSGNREFIFPSRIKPNQPMNSQTVNASLK----RAGFGG-VLVSHGL 339 (413)
T ss_pred HHHCCCCCCCEECCCHHHHHHHHHHH------HHCCCCEEECCCCCCCCCCCCHHHHHHHHH----HCCCCC-CEECCCC
T ss_conf 68848988715278699999999999------861997698036999999788899999999----669999-7658484
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCCHH-HHHHHHHCCH-HHHHHHHHH
Q ss_conf 8899999998588888999985589989-9899964599-999999998
Q gi|255764498|r 241 RHAFASHLLEGGADLRTIQILLGHTDIS-TTQIYTHLLP-DKLQKLVQD 287 (300)
Q Consensus 241 Rht~at~l~~~G~~~~~v~~~lGH~s~~-tT~~Y~~~~~-~~~~~~~~~ 287 (300)
T Consensus 340 RrT~~T~l~e~g~~~~viE~~L~H~~~~~v~~~Ynr~~yl~eRr~~mq~ 388 (413)
T PRK09692 340 RSIASTALNEQGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQW 388 (413)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCHHHHHHHHHHHHHH
T ss_conf 5779998997699999999986899998289995677599999999999