HHsearch alignment for GI: 255764498 and conserved domain: cd00801
>cd00801 INT_P4 Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. They share the same fold in their catalytic domain and the overall reaction mechanism with the superfamily of DNA breaking-rejoining enzymes. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes.
Probab=100.00 E-value=1.4e-45 Score=283.64 Aligned_cols=261 Identities=21% Similarity=0.292 Sum_probs=207.7
Q ss_pred HHCCHHHHHHHHHHHHHH-HHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 413899999999999999-9997544998688999999999999997799843532210112334321000122222212
Q gi|255764498|r 6 RASSINTLSAYKRDLKEM-QNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPS 84 (300)
Q Consensus 6 R~~S~~T~~~Y~~~l~~f-~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np~ 84 (300)
T Consensus 86 ~~~~~~t~~~~~~~l~~~i~p~~g--~~~l~~It~~~i~~~~~~l~~~~-~~~ta~~~~~~l~~~~~~A~~~~~i~~NP~ 162 (357)
T cd00801 86 PRWSEKHARQWRRTLEKHVLPVLG--KKPITEITARDLLDVLRRIEARG-ALETARRVRQRLKQVFRYAIARGLIEANPA 162 (357)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHC--CCCHHHCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 024768999999999977589877--87489918899999999998569-899999999999999999998277443657
Q ss_pred CCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 222121222--111223320246999986432001256102776543110001221001343334320000011110001
Q gi|255764498|r 85 DTLELPKKN--HILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMI 162 (300)
Q Consensus 85 ~~i~~~k~~--~~~~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~ 162 (300)
T Consensus 163 ~~i~~~~~~~~~~r~r~lt~ee~~~l~~~l~~~~~~~--------~~~~~~~l~l~TG~R~gE~~~L~w~diD~~~~~~~ 234 (357)
T cd00801 163 ADLRGADGAPKKQHDRALSPDELPEFLQALDAASGSP--------VTRLALKLLLLTGVRPGELRGARWSEIDLENALWT 234 (357)
T ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCH--------HHHHHHHHHHHHCCCHHHHHCCCHHHEECCCCEEE
T ss_conf 6544410678877666789999999999998577883--------79999999999777888886387998777788489
Q ss_pred CC---CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHCCCCCCCCCHH
Q ss_conf 11---2221111100001247887532321001246777520012333-2222211111110123442014667642598
Q gi|255764498|r 163 IQ---GKGNKERLVILSPSALHALQMYKKTCSSMKMTGNDLWLFPSST-KTGHLSRQVFARDLKALAARAGIQKKNISPH 238 (300)
Q Consensus 163 v~---~K~~k~R~ipi~~~~~~~l~~y~~~~~~~~~~~~~~~lf~~~~-~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H 238 (300)
T Consensus 235 Ip~~~tK~~~~~~vPL~~~~~~~L~~~~~~------~~~~~~vF~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~t~H 303 (357)
T cd00801 235 IPAERMKTRRPHRVPLSDQALALLEELREL------SGHSEYVFPSRRDRGKPLSENTLNKALKR----MGYL-GEWTPH 303 (357)
T ss_pred EECCCCCCCCCEEEECCHHHHHHHHHHHHH------CCCCCEEECCCCCCCCCCCHHHHHHHHHH----HCCC-CCCEEE
T ss_conf 620236589936983989999999999886------49994582579999997748999999999----6599-995032
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHH-HHHHCC-HHHHHHHHHHH
Q ss_conf 858899999998588888999985589989989-996459-99999999982
Q gi|255764498|r 239 IIRHAFASHLLEGGADLRTIQILLGHTDISTTQ-IYTHLL-PDKLQKLVQDY 288 (300)
Q Consensus 239 ~lRht~at~l~~~G~~~~~v~~~lGH~s~~tT~-~Y~~~~-~~~~~~~~~~~ 288 (300)
T Consensus 304 dlRhT~aT~l~~~Gv~~~~i~~~LGH~~~~~t~~~Y~h~~y~~ekr~~l~~w 355 (357)
T cd00801 304 GLRRTARTWLNELGFPPDVIERQLAHVLGGKVRAAYNRADYLEERREAMQWW 355 (357)
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4889999999985989999999848999981899961744899999999986