HHsearch alignment for GI: 255764498 and conserved domain: cd00801

>cd00801 INT_P4 Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. They share the same fold in their catalytic domain and the overall reaction mechanism with the superfamily of DNA breaking-rejoining enzymes. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes.
Probab=100.00  E-value=1.4e-45  Score=283.64  Aligned_cols=261  Identities=21%  Similarity=0.292  Sum_probs=207.7

Q ss_pred             HHCCHHHHHHHHHHHHHH-HHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             413899999999999999-9997544998688999999999999997799843532210112334321000122222212
Q gi|255764498|r    6 RASSINTLSAYKRDLKEM-QNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPS   84 (300)
Q Consensus         6 R~~S~~T~~~Y~~~l~~f-~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np~   84 (300)
T Consensus        86 ~~~~~~t~~~~~~~l~~~i~p~~g--~~~l~~It~~~i~~~~~~l~~~~-~~~ta~~~~~~l~~~~~~A~~~~~i~~NP~  162 (357)
T cd00801          86 PRWSEKHARQWRRTLEKHVLPVLG--KKPITEITARDLLDVLRRIEARG-ALETARRVRQRLKQVFRYAIARGLIEANPA  162 (357)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHC--CCCHHHCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf             024768999999999977589877--87489918899999999998569-899999999999999999998277443657


Q ss_pred             CCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf             222121222--111223320246999986432001256102776543110001221001343334320000011110001
Q gi|255764498|r   85 DTLELPKKN--HILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMI  162 (300)
Q Consensus        85 ~~i~~~k~~--~~~~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~  162 (300)
T Consensus       163 ~~i~~~~~~~~~~r~r~lt~ee~~~l~~~l~~~~~~~--------~~~~~~~l~l~TG~R~gE~~~L~w~diD~~~~~~~  234 (357)
T cd00801         163 ADLRGADGAPKKQHDRALSPDELPEFLQALDAASGSP--------VTRLALKLLLLTGVRPGELRGARWSEIDLENALWT  234 (357)
T ss_pred             HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCH--------HHHHHHHHHHHHCCCHHHHHCCCHHHEECCCCEEE
T ss_conf             6544410678877666789999999999998577883--------79999999999777888886387998777788489


Q ss_pred             CC---CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHCCCCCCCCCHH
Q ss_conf             11---2221111100001247887532321001246777520012333-2222211111110123442014667642598
Q gi|255764498|r  163 IQ---GKGNKERLVILSPSALHALQMYKKTCSSMKMTGNDLWLFPSST-KTGHLSRQVFARDLKALAARAGIQKKNISPH  238 (300)
Q Consensus       163 v~---~K~~k~R~ipi~~~~~~~l~~y~~~~~~~~~~~~~~~lf~~~~-~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H  238 (300)
T Consensus       235 Ip~~~tK~~~~~~vPL~~~~~~~L~~~~~~------~~~~~~vF~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~t~H  303 (357)
T cd00801         235 IPAERMKTRRPHRVPLSDQALALLEELREL------SGHSEYVFPSRRDRGKPLSENTLNKALKR----MGYL-GEWTPH  303 (357)
T ss_pred             EECCCCCCCCCEEEECCHHHHHHHHHHHHH------CCCCCEEECCCCCCCCCCCHHHHHHHHHH----HCCC-CCCEEE
T ss_conf             620236589936983989999999999886------49994582579999997748999999999----6599-995032


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHH-HHHHCC-HHHHHHHHHHH
Q ss_conf             858899999998588888999985589989989-996459-99999999982
Q gi|255764498|r  239 IIRHAFASHLLEGGADLRTIQILLGHTDISTTQ-IYTHLL-PDKLQKLVQDY  288 (300)
Q Consensus       239 ~lRht~at~l~~~G~~~~~v~~~lGH~s~~tT~-~Y~~~~-~~~~~~~~~~~  288 (300)
T Consensus       304 dlRhT~aT~l~~~Gv~~~~i~~~LGH~~~~~t~~~Y~h~~y~~ekr~~l~~w  355 (357)
T cd00801         304 GLRRTARTWLNELGFPPDVIERQLAHVLGGKVRAAYNRADYLEERREAMQWW  355 (357)
T ss_pred             CCHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             4889999999985989999999848999981899961744899999999986