HHsearch alignment for GI: 255764498 and conserved domain: cd01183
>cd01183 INT_SG1_C INT_SG1, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 1, C-terminal catalytic domain. The CD contains mainly predicted integrase/recombinase and site-specific XerD recombinases. The members of this CD are found predominantly in proteobacteria. These proteins have not been biochemically characerised as yet.
Probab=100.00 E-value=1.4e-38 Score=243.59 Aligned_cols=174 Identities=32% Similarity=0.417 Sum_probs=138.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHH----CCCC-CCCCCCCCCC
Q ss_conf 3320246999986432001256102776543110001221001343334320000011110----0011-1222111110
Q gi|255764498|r 99 TLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTER----TMII-QGKGNKERLV 173 (300)
Q Consensus 99 ~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~----~i~v-~~K~~k~R~i 173 (300)
T Consensus 1 ~lt~~~~~~~~~~~~~~p---~~~~~~~~Rd~ail~ll~~tGlR~sEl~~L~~~Di~~~~~~~~~~l~i~~gKg~k~R~v 77 (196)
T cd01183 1 ALTEDQWAFVIDTVASLP---AQDPEHAARLLFLLALLYSTGLRISELAAATGPDLEAFVQGGGWWLYVPVGKGGKERRV 77 (196)
T ss_pred CCCHHHHHHHHHHHHHCC---CCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHCHHCCCCCEEEEEEECCCCCEEEE
T ss_conf 979999999999998577---78970769999999999996662999983988870231167860599885889850030
Q ss_pred HHHHHHHHHHHHHHHHHCC--CCCCCCCCCCCCC---CCCCCCCCCCCCCCCHHHHHHHCCC------------CCCCCC
Q ss_conf 0001247887532321001--2467775200123---3322222111111101234420146------------676425
Q gi|255764498|r 174 ILSPSALHALQMYKKTCSS--MKMTGNDLWLFPS---STKTGHLSRQVFARDLKALAARAGI------------QKKNIS 236 (300)
Q Consensus 174 pi~~~~~~~l~~y~~~~~~--~~~~~~~~~lf~~---~~~~~~~s~~~~~~~~~~~~~~~gi------------~~~~~t 236 (300)
T Consensus 78 pl~~~~~~~L~~yl~~r~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~s 157 (196)
T cd01183 78 PVSDELLAALARYRQARGLPPEPAAGEAVPLLGRHKSAGGGGGLSSAQLYRIVKRVFGAAADRLQADGFEEDAAQLRAAS 157 (196)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCC
T ss_conf 18899999999999984776555546676401036777667875199999999999999999976412176751037678
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 988588999999985888889999855899899899964
Q gi|255764498|r 237 PHIIRHAFASHLLEGGADLRTIQILLGHTDISTTQIYTH 275 (300)
Q Consensus 237 ~H~lRht~at~l~~~G~~~~~v~~~lGH~s~~tT~~Y~~ 275 (300)
T Consensus 158 pH~LRHt~At~ll~~G~~l~~Vq~~LGH~si~TT~~Y~H 196 (196)
T cd01183 158 THWLRHTHASHDLAAGVPLEHVQDNLGHASIDTTSRYLH 196 (196)
T ss_pred CCCCHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHCCC
T ss_conf 832589999999987999999998808998678734339