HHsearch alignment for GI: 255764498 and conserved domain: cd01187
>cd01187 INT_SG4 INT_SG4, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 4, N- and C-terminal domains. The CD contains mainly predicted bacterial integrase/recombinases for which not much biochemical characterization is available.
Probab=100.00 E-value=0 Score=345.96 Aligned_cols=270 Identities=23% Similarity=0.272 Sum_probs=223.7
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 13899999999999999999754499868899999999999999779984353221011233432100012222221222
Q gi|255764498|r 7 ASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPSDT 86 (300)
Q Consensus 7 ~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np~~~ 86 (300)
T Consensus 16 G~~~~t---~~~~L~~F~~fl~~~~~--~~~~~~~~~~w~~~--~~~~s~~t~~~rls~lr~F~~~l~~~g~~~~~P~~~ 88 (299)
T cd01187 16 GYKYRT---PARLLRDFVRFLERHGA--GFITTDLALRWAAS--PPSAQPATWAGRLGVVRRFARHRRRADPRTEVPPAD 88 (299)
T ss_pred CCCHHH---HHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 998156---89999999999986799--88899999999987--799988999999999999999999869956690765
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCC-C
Q ss_conf 212122211122332024699998643200125610277654311000122100134333432000001111000111-2
Q gi|255764498|r 87 LELPKKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQ-G 165 (300)
Q Consensus 87 i~~~k~~~~~~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~-~ 165 (300)
T Consensus 89 ~~~~k~~~~~P~~lt~~Ei~~Ll~a~~~~~---~~~~~~~~~~~~l~~Lly~tGlR~sEl~~L~~~Dvd~~~~~i~v~~g 165 (299)
T cd01187 89 LFPRRPRRPTPYIYTDEEIQRLLAAALQLP---PTSGLRPWTYRTLFGLLAVTGLRLGEALRLRLSDVDLDSGILTVRDS 165 (299)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCEEEEECC
T ss_conf 457899999999999999999984110169---96105768999999999995888999803343305676784765418
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCHHHHHHHCCCC-CCCCCHHHHH
Q ss_conf 2211111000012478875323210012467775200123332222211111---11012344201466-7642598858
Q gi|255764498|r 166 KGNKERLVILSPSALHALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVF---ARDLKALAARAGIQ-KKNISPHIIR 241 (300)
Q Consensus 166 K~~k~R~ipi~~~~~~~l~~y~~~~~~~~~~~~~~~lf~~~~~~~~~s~~~~---~~~~~~~~~~~gi~-~~~~t~H~lR 241 (300)
T Consensus 166 Kg~K~R~Vpl~~~~~~~L~~yl~~r~~~~~~~~~~~lF~~~~-g~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~pH~LR 244 (299)
T cd01187 166 KFGKSRLVPLHASTRAALRDYLARRDRLLPAPDSSAFFVSSR-GGRLSYGGHRVFYALSREIGLRGWAQRGRGPRLHDLR 244 (299)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC-CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 899707985669999999999998476426898986745899-8978777899999999999986066668999976571
Q ss_pred HHHHHHHH----HCCCCHH----HHHHHHCCCCHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 89999999----8588888----9999855899899899964599999999998
Q gi|255764498|r 242 HAFASHLL----EGGADLR----TIQILLGHTDISTTQIYTHLLPDKLQKLVQD 287 (300)
Q Consensus 242 ht~at~l~----~~G~~~~----~v~~~lGH~s~~tT~~Y~~~~~~~~~~~~~~ 287 (300)
T Consensus 245 HtfAt~~l~~~~~~G~di~~~L~~lq~~LGH~si~tT~~Y~h~~~e~l~~a~~r 298 (299)
T cd01187 245 HRFAVTRLTRWYRAGADVERKLPVLATYLGHANITDTYWYLHASPELMELAARR 298 (299)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHH
T ss_conf 389999999998679973433999999748998688898880399999999850