>cd01189 INT_phiLC3_C phiLC3 phage and phage-related integrases, site-specific recombinases, DNA breaking-rejoining enzymes, C-terminal catalytic domain. This CD includes various bacterial (mainly gram positive) and phage integrases, including those similar to Lactococcus phage phiLC3, TPW22, Tuc2009, BK5-T, A2, bIL285, bIL286, bIL311, ul36 and phi g1e; Staphylococcus aureus phage phi13 and phi42; Oenococcus oeni phage fOg44; Streptococcus thermophilus phage O1205 and Sfi21; and Streptococcus pyogenes phage T12 and T270.

Probab=100.00 E-value=4e-36 Score=229.39 Aligned_cols=171 Identities=33% Similarity=0.481 Sum_probs=140.8 Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCC------------- Q ss_conf 2332024699998643200125610277654311000122100134333432000001111000111------------- Q gi|255764498|r 98 KTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQ------------- 164 (300) Q Consensus 98 ~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~------------- 164 (300) T Consensus 1 ~yLt~~Ei~~ll~~~~~~~---------~~~~~~~~~l~~~tGlR~~Ei~~L~~~did~~~~~i~v~~~~~~~~~~~~~~ 71 (191) T cd01189 1 KFLTKEELKKLLEYLKKHE---------NSFSKLLILLLAYTGLRIGEALALTWSDIDFENNTITINKTWDYKTGGYIFK 71 (191) T ss_pred CCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHCCCHHHHHHCCHHHCCCCCCEEEEECCEEECCCCEEEC T ss_conf 9899999999999875668---------9789999999999781499997289999465558589841012113530335 Q ss_pred -CCCCC-CCCCHHHHHHHHHHHHHHHHHCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHH Q ss_conf -22211-111000012478875323210012---4677752001233322222111111101234420146676425988 Q gi|255764498|r 165 -GKGNK-ERLVILSPSALHALQMYKKTCSSM---KMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHI 239 (300) Q Consensus 165 -~K~~k-~R~ipi~~~~~~~l~~y~~~~~~~---~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~ 239 (300) T Consensus 72 ~~Kt~~~~R~v~i~~~~~~~L~~~~~~~~~~~~~~~~~~~~~if~~-~~~~~~~~~~~~~~~~~~~~~~gi~--~~~~H~ 148 (191) T cd01189 72 PPKTKSSIRTIPLDKKTIAILKEYKKEQKKYLLGEINNDDELVFTN-KGGKISTPSTINKRLKRICKKAGIP--KITFHG 148 (191) T ss_pred CCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC-CCCCCCCHHHHHHHHHHHHHHCCCC--CCCHHH T ss_conf 7778887248847999999999999997776403578987437646-9999178889999999999980898--056343 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCCHHHH-HHHHHCCHHH Q ss_conf 5889999999858888899998558998998-9996459999 Q gi|255764498|r 240 IRHAFASHLLEGGADLRTIQILLGHTDISTT-QIYTHLLPDK 280 (300) Q Consensus 240 lRht~at~l~~~G~~~~~v~~~lGH~s~~tT-~~Y~~~~~~~ 280 (300) T Consensus 149 lRHT~aT~l~~~G~~~~~i~~~lGH~s~~~T~~~Y~h~~~~~ 190 (191) T cd01189 149 LRHTHASLLLEAGVSIKYVSERLGHADISTTLDTYSHLLPEK 190 (191) T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCC T ss_conf 599999999996999999999858998899997711669465

HHsearch alignment for GI: 255764498 and conserved domain: cd01189