HHsearch alignment for GI: 255764498 and conserved domain: cd01190
>cd01190 INT_SG5 INT_SG5, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 5, N- and C-terminal domains. The CD contains mainly predicted bacterial integrase/recombinases.
Probab=100.00 E-value=0 Score=348.76 Aligned_cols=249 Identities=26% Similarity=0.396 Sum_probs=213.1
Q ss_pred CCCHHHCCHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 99868899999999999999-7799843532210112334321000122222---2122221212221112233202469
Q gi|255764498|r 31 EISLSAASTNHLISYLNHLS-QRKLVTSSQRRKISVIRQFYNFLCYEGLRKD---NPSDTLELPKKNHILPKTLHKDTIA 106 (300)
Q Consensus 31 ~~~~~~i~~~~i~~~~~~l~-~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~---np~~~i~~~k~~~~~~~~ls~~e~~ 106 (300)
T Consensus 2 ~l~l~dI~~~~i~~y~~~L~~~rg~s~~Tin~~l~~L~~f~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~l~~eei~ 81 (260)
T cd01190 2 RLEIEDIDAPLILAFLDHLENDRGNSIRTRNARLAALHSFFRYAAREVPEHLPTIQRVLAIPMKRFKRPLVTYLTREEVQ 81 (260)
T ss_pred CCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 88758799999999999999846999999999999999999999980840145537101488788899999889999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99986432001256102776543110001221001343334320000011110-00111222111110000124788753
Q gi|255764498|r 107 NLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTER-TMIIQGKGNKERLVILSPSALHALQM 185 (300)
Q Consensus 107 ~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~-~i~v~~K~~k~R~ipi~~~~~~~l~~ 185 (300)
T Consensus 82 ~ll~~~~~-------~~~~~~rd~~i~~ll~~tGlR~sEl~~L~~~did~~~~~~~~~~~K~~k~r~vpi~~~~~~~L~~ 154 (260)
T cd01190 82 ALLAAPDR-------RTWSGRRDRAMLLFLYNTGARVSEATGLKVDDLQLDPPAQVRLIGKGRKERTVPLWRSTAAALRA 154 (260)
T ss_pred HHHHCCCC-------CCCCCHHHHHHHHHHHHHCCCHHHHHCCCHHHCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHH
T ss_conf 99818665-------67303689999999999575589786286976178998089996899804135468999999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC-----CCCCCCHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 232100124677752001233322222111111101234420146-----676425988588999999985888889999
Q gi|255764498|r 186 YKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGI-----QKKNISPHIIRHAFASHLLEGGADLRTIQI 260 (300)
Q Consensus 186 y~~~~~~~~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi-----~~~~~t~H~lRht~at~l~~~G~~~~~v~~ 260 (300)
T Consensus 155 ~~~~~~~~---~~~~~lF~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~lRHt~At~ll~~G~~l~~vq~ 230 (260)
T cd01190 155 WLRERGLH---AEDEPLFVNR-RGEPMTRFGVTYLLRKHAAKAAATAPTLATKRISPHVLRHTTAMHLLQSGVDIVVIAL 230 (260)
T ss_pred HHHHCCCC---CCCCEEEECC-CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHH
T ss_conf 99975446---8766151278-9994786889999999999972416432467767671389999999987999999999
Q ss_pred HHCCCCHHHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 855899899899964599999999998280
Q gi|255764498|r 261 LLGHTDISTTQIYTHLLPDKLQKLVQDYHP 290 (300)
Q Consensus 261 ~lGH~s~~tT~~Y~~~~~~~~~~~~~~~~p 290 (300)
T Consensus 231 ~LGH~~i~tT~~Y~hv~~~~~r~a~~k~~p 260 (260)
T cd01190 231 WLGHASLETTNIYAEADLEMKRRALAKATP 260 (260)
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHCC
T ss_conf 868998899999984799999999998691