HHsearch alignment for GI: 255764498 and conserved domain: cd01192
>cd01192 INT_P22_C P22-like integrases, site-specific recombinases, DNA breaking-rejoining enzymes, C-terminal catalytic domain. This CD includes various bacterial and phage integrases, including those similar to phage P22-like integrases, DLP12 and APSE-1.
Probab=100.00 E-value=1.5e-37 Score=237.72 Aligned_cols=171 Identities=25% Similarity=0.374 Sum_probs=142.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCC---CCCCCCC
Q ss_conf 1122332024699998643200125610277654311000122100134333432000001111000111---2221111
Q gi|255764498|r 95 ILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQ---GKGNKER 171 (300)
Q Consensus 95 ~~~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~---~K~~k~R 171 (300)
T Consensus 2 kr~r~Lt~eE~~~ll~~~~~-------------~~r~~i~l~~~TG~R~~El~~L~~~did~~~~~i~i~~~~~K~~~~r 68 (177)
T cd01192 2 KRVRWLTPEEAERLIAELPP-------------HLKPAVLFALNTGLRRSEILGLEWSQVDLDNRVAWVRPATSKGGRAI 68 (177)
T ss_pred CCCCCCCHHHHHHHHHHCCH-------------HHHHHHHHHHHHCCCHHHHHHCCCHHHHHHCCHHCCCCCCCCCCCEE
T ss_conf 87789999999999982898-------------79999999999783499998387866663011101144568888544
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 10000124788753232100124677752001233322222111111101234420146676425988588999999985
Q gi|255764498|r 172 LVILSPSALHALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLLEG 251 (300)
Q Consensus 172 ~ipi~~~~~~~l~~y~~~~~~~~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~~~ 251 (300)
T Consensus 69 ~vpl~~~~~~~l~~~~~~-------~~~~~vf~~~~-~~~~~--~~~~~~~~~~~~agi~--~~~~H~lRHt~at~l~~~ 136 (177)
T cd01192 69 RVPLNDEALQVLKRQKAG-------AHKPWVFAGAG-GDPRI--DSKTAWRQALQRAGIS--DFRWHDLRHTWASWLVQS 136 (177)
T ss_pred ECCCHHHHHHHHHHHHHC-------CCCCCEECCCC-CCCCC--HHHHHHHHHHHHCCCC--CCCCCCCCHHHHHHHHHC
T ss_conf 261309999999998723-------57751411589-98510--1789999999973799--998688968899999996
Q ss_pred CCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 888889999855899899899964599999999998280
Q gi|255764498|r 252 GADLRTIQILLGHTDISTTQIYTHLLPDKLQKLVQDYHP 290 (300)
Q Consensus 252 G~~~~~v~~~lGH~s~~tT~~Y~~~~~~~~~~~~~~~~p 290 (300)
T Consensus 137 G~~~~~i~~~lGH~~~~~T~~Y~h~~~~~~r~a~~~l~~ 175 (177)
T cd01192 137 GVPLYVLQELLGHSSLQMVRRYAHLSPEHLRAAARALDA 175 (177)
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 989999999958998999999886699999999999873