HHsearch alignment for GI: 255764498 and conserved domain: cd01193
>cd01193 INT_IntI IntI (E2) integrases, site-specific tyrosine recombinases, DNA breaking-rejoining enzymes, N- and C-terminal domains. This CD includes integrases which are components of multiresistant integrons and mediate recombination between a proximal attI site and a secondary target called the attC (or 59-base element) present on various mobile gene cassettes. Integron-integrases are present in many natural occurring mobile elements, including transposons and conjugative plasmids. Vibrio, Shewanella, Xanthomonas and Pseudomonas species harbor chromosomal super-integrons. All integron-integrases carry large inserts unlike the TnpF ermF-like proteins also seen in this group.
Probab=100.00 E-value=0 Score=328.99 Aligned_cols=230 Identities=34% Similarity=0.575 Sum_probs=201.6
Q ss_pred CCCHHHCCHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 9986889999999999999977-998435322101123343210001222222122221212221112233202469999
Q gi|255764498|r 31 EISLSAASTNHLISYLNHLSQR-KLVTSSQRRKISVIRQFYNFLCYEGLRKDNPSDTLELPKKNHILPKTLHKDTIANLL 109 (300)
Q Consensus 31 ~~~~~~i~~~~i~~~~~~l~~~-~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np~~~i~~~k~~~~~~~~ls~~e~~~ll 109 (300)
T Consensus 4 ~k~~~~it~~dI~~y~~~L~~~~~~s~~Tin~~l~~l~~~~~~~~~~~~---~~~~~~~~~k~~~~~~~~lt~eEi~~ll 80 (242)
T cd01193 4 GRSPDELGEEDVRAFLTLLAVEGNVSASTQNQALSALLFFYRHTLKRDL---PWLQRIRRPRKPRKLPVVLSPEEVRRLL 80 (242)
T ss_pred CCCHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC---CHHHHCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 9895889999999999999984898999999999999999999987689---6566565578999899889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 864320012561027765431100012210013433343200000111100011-1222111110000124788753232
Q gi|255764498|r 110 EQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMII-QGKGNKERLVILSPSALHALQMYKK 188 (300)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v-~~K~~k~R~ipi~~~~~~~l~~y~~ 188 (300)
T Consensus 81 ~~~~------------~~r~~~~~~ll~~tGlR~~El~~L~~~did~~~~~i~i~~~K~~k~R~vpl~~~~~~~l~~~l~ 148 (242)
T cd01193 81 GALT------------GLKHRLILSLLYGCGLRLSECLRLRVKDIDFDRGQIRVRQGKGGKDRYVMLPEALLELLRAYWK 148 (242)
T ss_pred HCCC------------CCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEECCHHHHHHHHHHHH
T ss_conf 7387------------7679999999998289888898786631676751799861889960588759999999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 10012467775200123332-------22221111111012344201466764259885889999999858888899998
Q gi|255764498|r 189 TCSSMKMTGNDLWLFPSSTK-------TGHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLLEGGADLRTIQIL 261 (300)
Q Consensus 189 ~~~~~~~~~~~~~lf~~~~~-------~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~~~G~~~~~v~~~ 261 (300)
T Consensus 149 ~~~~~~~~~~~~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~-~~~~~H~lRHT~at~ll~~G~~l~~v~~~ 227 (242)
T cd01193 149 RARALGRERPWQWLFPSTRRSRDPVERRHHLSERTLQRALKKAVEQAGID-KRVTPHTLRHSFATHLLEAGYDIRTIQEL 227 (242)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf 84653003652101356677757553677675999999999999984999-99886748999999999879999999988
Q ss_pred HCCCCHHHHHHHHHC
Q ss_conf 558998998999645
Q gi|255764498|r 262 LGHTDISTTQIYTHL 276 (300)
Q Consensus 262 lGH~s~~tT~~Y~~~ 276 (300)
T Consensus 228 lGH~si~tT~~Y~Hv 242 (242)
T cd01193 228 LGHSDLKTTMIYTHV 242 (242)
T ss_pred CCCCCHHHHHHHHCC
T ss_conf 399888899870583