HHsearch alignment for GI: 255764498 and conserved domain: cd01193
>cd01193 INT_IntI IntI (E2) integrases, site-specific tyrosine recombinases, DNA breaking-rejoining enzymes, N- and C-terminal domains. This CD includes integrases which are components of multiresistant integrons and mediate recombination between a proximal attI site and a secondary target called the attC (or 59-base element) present on various mobile gene cassettes. Integron-integrases are present in many natural occurring mobile elements, including transposons and conjugative plasmids. Vibrio, Shewanella, Xanthomonas and Pseudomonas species harbor chromosomal super-integrons. All integron-integrases carry large inserts unlike the TnpF ermF-like proteins also seen in this group.
Probab=92.49 E-value=0.38 Score=25.93 Aligned_cols=48 Identities=15% Similarity=0.100 Sum_probs=34.8
Q ss_pred CHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCH--------------HHCCHHHHHHHHHHH
Q ss_conf 646641389999999999999999975449986--------------889999999999999
Q gi|255764498|r 2 MSSERASSINTLSAYKRDLKEMQNFLNNKEISL--------------SAASTNHLISYLNHL 49 (300)
Q Consensus 2 l~~~R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~--------------~~i~~~~i~~~~~~l 49 (300)
T Consensus 22 L~~~~~~s~~Tin~~l~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~lt~eEi~~ll~~~ 83 (242)
T cd01193 22 LAVEGNVSASTQNQALSALLFFYRHTLKRDLPWLQRIRRPRKPRKLPVVLSPEEVRRLLGAL 83 (242)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 99848989999999999999999999876896566565578999899889999999999738