HHsearch alignment for GI: 255764498 and conserved domain: cd01194
>cd01194 INT_Tn554A_C Tn544A and related transposases, DNA breaking-rejoining enzymes, integrase/recombinases, C-terminal catalytic domain. This CD includes various bacterial transposases similar to TnpA from transposon Tn554.
Probab=100.00 E-value=4.8e-40 Score=252.20 Aligned_cols=172 Identities=23% Similarity=0.403 Sum_probs=147.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCC----------CCCCC
Q ss_conf 32024699998643200125610277654311000122100134333432000001111000111----------22211
Q gi|255764498|r 100 LHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQ----------GKGNK 169 (300)
Q Consensus 100 ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~----------~K~~k 169 (300)
T Consensus 1 LT~~Ev~~ll~a~~------------~~Rd~~i~~ll~~TGlR~gE~~~L~~~Did~~~~~i~i~~~~~~~~~~~~K~~~ 68 (186)
T cd01194 1 LTPSEVQRLINACG------------NLRDKFLFALLYETGLRIGEALGLRIEDIDLAENQIWLVPREDNANGARAKSGR 68 (186)
T ss_pred CCHHHHHHHHHHCC------------HHHHHHHHHHHHHHCCCHHHHHHCCHHHCCCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 99899999998154------------038999999999969898889708898725769989998544555552036884
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 111000012478875323210012467775200123332---22221111111012344201466764259885889999
Q gi|255764498|r 170 ERLVILSPSALHALQMYKKTCSSMKMTGNDLWLFPSSTK---TGHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFAS 246 (300)
Q Consensus 170 ~R~ipi~~~~~~~l~~y~~~~~~~~~~~~~~~lf~~~~~---~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at 246 (300)
T Consensus 69 ~r~vpi~~~l~~~~~~~~~~~~~~~-~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~H~lRHT~at 144 (186)
T cd01194 69 ERRIPVSQYLIDLYVDYVTEIYYLE-ELESDYVFVNVKGGNQGKPLNYTDVYDLVRRLKKKTGI---DFTPHMFRHTHAT 144 (186)
T ss_pred EEEEECCHHHHHHHHHHHHHHHHHH-CCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCC---CCCCCCCHHHHHH
T ss_conf 2588777999999999999976332-15777445633577568877799999999999998499---8774575999999
Q ss_pred HHHHCCCCHHHHHHHHCCCCHHHH-HHHHHCCHHHHHHHHHH
Q ss_conf 999858888899998558998998-99964599999999998
Q gi|255764498|r 247 HLLEGGADLRTIQILLGHTDISTT-QIYTHLLPDKLQKLVQD 287 (300)
Q Consensus 247 ~l~~~G~~~~~v~~~lGH~s~~tT-~~Y~~~~~~~~~~~~~~ 287 (300)
T Consensus 145 ~l~~~G~~~~~v~~~lGH~~~~tT~~~Y~h~~~e~~~~~~~k 186 (186)
T cd01194 145 ELIRAGWSIEVVADRLGHAHVQTTLNTYGHLSEEDIRREFNK 186 (186)
T ss_pred HHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCC
T ss_conf 999879999999998289987999998456899999998658