HHsearch alignment for GI: 255764498 and conserved domain: cd01194

>cd01194 INT_Tn554A_C Tn544A and related transposases, DNA breaking-rejoining enzymes, integrase/recombinases, C-terminal catalytic domain. This CD includes various bacterial transposases similar to TnpA from transposon Tn554.
Probab=100.00  E-value=4.8e-40  Score=252.20  Aligned_cols=172  Identities=23%  Similarity=0.403  Sum_probs=147.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCC----------CCCCC
Q ss_conf             32024699998643200125610277654311000122100134333432000001111000111----------22211
Q gi|255764498|r  100 LHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQ----------GKGNK  169 (300)
Q Consensus       100 ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~----------~K~~k  169 (300)
T Consensus         1 LT~~Ev~~ll~a~~------------~~Rd~~i~~ll~~TGlR~gE~~~L~~~Did~~~~~i~i~~~~~~~~~~~~K~~~   68 (186)
T cd01194           1 LTPSEVQRLINACG------------NLRDKFLFALLYETGLRIGEALGLRIEDIDLAENQIWLVPREDNANGARAKSGR   68 (186)
T ss_pred             CCHHHHHHHHHHCC------------HHHHHHHHHHHHHHCCCHHHHHHCCHHHCCCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf             99899999998154------------038999999999969898889708898725769989998544555552036884


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf             111000012478875323210012467775200123332---22221111111012344201466764259885889999
Q gi|255764498|r  170 ERLVILSPSALHALQMYKKTCSSMKMTGNDLWLFPSSTK---TGHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFAS  246 (300)
Q Consensus       170 ~R~ipi~~~~~~~l~~y~~~~~~~~~~~~~~~lf~~~~~---~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at  246 (300)
T Consensus        69 ~r~vpi~~~l~~~~~~~~~~~~~~~-~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~H~lRHT~at  144 (186)
T cd01194          69 ERRIPVSQYLIDLYVDYVTEIYYLE-ELESDYVFVNVKGGNQGKPLNYTDVYDLVRRLKKKTGI---DFTPHMFRHTHAT  144 (186)
T ss_pred             EEEEECCHHHHHHHHHHHHHHHHHH-CCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCC---CCCCCCCHHHHHH
T ss_conf             2588777999999999999976332-15777445633577568877799999999999998499---8774575999999


Q ss_pred             HHHHCCCCHHHHHHHHCCCCHHHH-HHHHHCCHHHHHHHHHH
Q ss_conf             999858888899998558998998-99964599999999998
Q gi|255764498|r  247 HLLEGGADLRTIQILLGHTDISTT-QIYTHLLPDKLQKLVQD  287 (300)
Q Consensus       247 ~l~~~G~~~~~v~~~lGH~s~~tT-~~Y~~~~~~~~~~~~~~  287 (300)
T Consensus       145 ~l~~~G~~~~~v~~~lGH~~~~tT~~~Y~h~~~e~~~~~~~k  186 (186)
T cd01194         145 ELIRAGWSIEVVADRLGHAHVQTTLNTYGHLSEEDIRREFNK  186 (186)
T ss_pred             HHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCC
T ss_conf             999879999999998289987999998456899999998658