HHsearch alignment for GI: 255764498 and conserved domain: pfam00589
>pfam00589 Phage_integrase Phage integrase family. Members of this family cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment. The catalytic site residues in CRE recombinase are Arg-173, His-289, Arg-292 and Tyr-324.
Probab=100.00 E-value=9.9e-37 Score=232.90 Aligned_cols=169 Identities=38% Similarity=0.556 Sum_probs=147.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCC-CCCCCCCCCHHH
Q ss_conf 2332024699998643200125610277654311000122100134333432000001111000111-222111110000
Q gi|255764498|r 98 KTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQ-GKGNKERLVILS 176 (300)
Q Consensus 98 ~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~-~K~~k~R~ipi~ 176 (300)
T Consensus 1 ~~lt~~e~~~ll~~~~~---------~~~lR~~~l~~l~~~tG~R~~El~~L~~~di~~~~~~i~i~~~K~~~~r~i~i~ 71 (170)
T pfam00589 1 RRLTEDEVERLLAALEE---------PLNIRDRALVELLLLTGLRISELLSLRWSDIDLDNGTIRIPQTKTRKSRTVPLS 71 (170)
T ss_pred CCCCHHHHHHHHHHHCC---------CCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCEEEEECCCCCCCCEECCCC
T ss_conf 98999999999986463---------459779999999999686988897421300467651787304411331001467
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf 12478875323210012467775200123332222211111110123442014667642598858899999998588888
Q gi|255764498|r 177 PSALHALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLLEGGADLR 256 (300)
Q Consensus 177 ~~~~~~l~~y~~~~~~~~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~~~G~~~~ 256 (300)
T Consensus 72 ~~~~~~l~~~~~~~~~~---~~~~~lf~~-~~~~~~~~~~~~~~~~~~~~~~g~~~-~~s~Hs~Rht~at~l~~~g~~~~ 146 (170)
T pfam00589 72 DAALEALKEWLGDRKEA---EESEFLFVS-RRGKPLSRSTVNRAFRRAGKRAGIEK-DLTPHDLRHTFATHLAENGVPLR 146 (170)
T ss_pred HHHHHHHHHHHHHHCCC---CCCCEEEEE-CCCCCCCCHHHHHHHHHHHHHCCCCC-CCCCCCCHHHHHHHHHHCCCCHH
T ss_conf 77999999999973146---777614320-16885531346788888888607787-67878884899999999699999
Q ss_pred HHHHHHCCCCHHHHHHHHHCCHHH
Q ss_conf 999985589989989996459999
Q gi|255764498|r 257 TIQILLGHTDISTTQIYTHLLPDK 280 (300)
Q Consensus 257 ~v~~~lGH~s~~tT~~Y~~~~~~~ 280 (300)
T Consensus 147 ~v~~~lGH~~~~tT~~Y~~~~~~~ 170 (170)
T pfam00589 147 VIQKLLGHSSISMTMRYTHVAAER 170 (170)
T ss_pred HHHHHHCCCCHHHHHHHCCCCCCC
T ss_conf 999996899989999820838559