HHsearch alignment for GI: 255764498 and conserved domain: pfam01028
>pfam01028 Topoisom_I Eukaryotic DNA topoisomerase I, catalytic core. Topoisomerase I promotes the relaxation of DNA superhelical tension by introducing a transient single-stranded break in duplex DNA and are vital for the processes of replication, transcription, and recombination.
Probab=97.45 E-value=0.00069 Score=41.86 Aligned_cols=134 Identities=24% Similarity=0.332 Sum_probs=81.5
Q ss_pred HCCCHHHHHCCCCCC-----------CCCCCHHHHHHHHHCCCC--CCCCCCCCCCHHH-HHHHHHHHHHHHHHCCCCCC
Q ss_conf 100012210013433-----------343200000111100011--1222111110000-12478875323210012467
Q gi|255764498|r 131 LLIELLYATGMRVSE-----------LVTLSAHTLNLTERTMII--QGKGNKERLVILS-PSALHALQMYKKTCSSMKMT 196 (300)
Q Consensus 131 ~il~ll~~tGlR~~E-----------i~~L~~~di~~~~~~i~v--~~K~~k~R~ipi~-~~~~~~l~~y~~~~~~~~~~ 196 (300)
T Consensus 58 ~~~~Lld~~~iRvGne~Y~~~n~S~GltTLr~~Hv~i~~~~i~~~F~GK~gv~~~~~v~d~~l~~~l~~l~~-----~~p 132 (244)
T pfam01028 58 VAVYLLDKTALRVGNEKYARENATVGLTTLRNRHVTLEGDVIRFDFLGKDGIRHENTVRDKRLAKNLKRLKQ-----KLP 132 (244)
T ss_pred HHHHHHHHHCCCCCCHHHHHHCCCCCEEECCCCCEEEECCEEEEEEECCCCCEEEEEECCHHHHHHHHHHHH-----CCC
T ss_conf 999999984413687434553398650100104478989989999877987478988688899999999985-----299
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHH-----HHHCCCC--------------HHH
Q ss_conf 775200123332222211111110123442014667642598858899999-----9985888--------------889
Q gi|255764498|r 197 GNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASH-----LLEGGAD--------------LRT 257 (300)
Q Consensus 197 ~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at~-----l~~~G~~--------------~~~ 257 (300)
T Consensus 133 g~~LF~y~~~g~~~~v~s~dvN~yLk~~~g------~~~TaKdFRTw~at~~a~~~L~~~~~~~~~~~~~k~~i~~a~~~ 206 (244)
T pfam01028 133 GDELFQYLDDGERDRVSSSDLNAYLRELMG------EGFTAKDFRTWNASVTALEALAELGKSLESVAEKKKAINAANKE 206 (244)
T ss_pred CCHHEEEECCCCEEECCHHHHHHHHHHHHC------CCCCHHHHHHHCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 732168716996342788999999999835------88752122221207999999996589988999999999999999
Q ss_pred HHHHHCCCCHHHH-HHHHHC
Q ss_conf 9998558998998-999645
Q gi|255764498|r 258 IQILLGHTDISTT-QIYTHL 276 (300)
Q Consensus 258 v~~~lGH~s~~tT-~~Y~~~ 276 (300)
T Consensus 207 vA~~LgnTp-aV~R~sYi~p 225 (244)
T pfam01028 207 VAILLGNTP-AVSRKSYIHP 225 (244)
T ss_pred HHHHHCCCC-CCHHHHCCCH
T ss_conf 999858984-1137744587