HHsearch alignment of GI: 255764498 and MMDB domain: 2a3v_A_95-144_243-320
>2a3v_A (A:95-144,A:243-320) Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str}
Probab=99.94 E-value=1.9e-28 Score=184.32 Aligned_cols=127 Identities=41% Similarity=0.634 Sum_probs=111.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 12221112233202469999864320012561027765431100012210013433343200000111100011122211
Q gi|255764498|r 90 PKKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQGKGNK 169 (300)
Q Consensus 90 ~k~~~~~~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~~K~~k 169 (300)
||.+++.|++++.+|+.++++.+. .||++|+.++|.||||+||+++|+++.=
T Consensus 2 pk~~~~lp~~l~~~e~~~ll~~~~-------------~r~~~~~~ll~~~GlR~~E~~~l~~s~~--------------- 53 (128)
T 2a3v_A 2 SQLERKLPVVLTRDEIRRLLEIVD-------------PKHQLPIKLLYGSGLRLMECMRLRVNET--------------- 53 (128)
T ss_dssp CCCCCCCCCCCCHHHHHHHTTSSC-------------HHHHHHHHHHHHSCCCHHHHHTCBGCHH---------------
T ss_pred HHHHCCCCCCCHHHHHHHCCCCCC-------------HHHHHHHHHHHHHCCCCCCCCCCHHCHH---------------
T ss_conf 000001222310355420000000-------------2588899998750012233333111689---------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 11100001247887532321001246777520012333222221111111012344201466764259885889999999
Q gi|255764498|r 170 ERLVILSPSALHALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLL 249 (300)
Q Consensus 170 ~R~ipi~~~~~~~l~~y~~~~~~~~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~ 249 (300)
+++..++++++++|++. +++||+|||||||.++
T Consensus 54 ----------------------------------------------~i~~~~k~~~~~agi~~-~~~~H~lRHT~aT~l~ 86 (128)
T 2a3v_A 54 ----------------------------------------------VLQKAVRRSAQEAGIEK-TVTCHTLRHSFATHLL 86 (128)
T ss_dssp ----------------------------------------------HHHHHHHHHHHTTCCCS-CCCHHHHHHHHHHHHH
T ss_pred ----------------------------------------------HHHHHHHHHHHHCCCCC-CCCCCCCHHHHHHHHH
T ss_conf ----------------------------------------------99999999999859999-9987114999999999
Q ss_pred HCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCH
Q ss_conf 858888899998558998998999645999999999982801
Q gi|255764498|r 250 EGGADLRTIQILLGHTDISTTQIYTHLLPDKLQKLVQDYHPL 291 (300)
Q Consensus 250 ~~G~~~~~v~~~lGH~s~~tT~~Y~~~~~~~~~~~~~~~~p~ 291 (300)
++|+|+..||++|||+|++||++|+|++++.+++++++++|+
T Consensus 87 ~~G~~~~~i~~~lGHss~~~t~~Y~h~~~~~~~~~~~~~~~L 128 (128)
T 2a3v_A 87 EVGADIRTVQEQLGHTDVKTTQIYTHVLDRGASGVLSPLSRL 128 (128)
T ss_dssp HTTCCHHHHHHHHTCSSHHHHGGGCC------CCCCCHHHHC
T ss_pred HCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 878999999988489998999998846998999986175249