HHsearch alignment of GI: 255764498 and MMDB domain: 2khq_A_
>2khq_A (A:) Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=99.38 E-value=1.6e-12 Score=91.80 Aligned_cols=89 Identities=19% Similarity=0.162 Sum_probs=80.0
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 64138999999999999999997544998688999999999999997799843532210112334321000122222212
Q gi|255764498|r 5 ERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPS 84 (300)
Q Consensus 5 ~R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np~ 84 (300)
++++|++|++.|+..++.|..|++. .++.+++..++++|++++.+. .+++|+++.++.|++||+||++.|+++.||+
T Consensus 17 ~~~~s~~T~~~y~~~~~~~~~~~~~--~~i~~i~~~~i~~~~~~l~~~-~s~~t~~~~~~~l~~~f~~a~~~~~i~~nP~ 93 (110)
T 2khq_A 17 LPHVSESTKRHYESAYKHIKDHFRH--KLLKDIKRTEYQKFLNEYGLT-HSYETIRKLNSYIRNAFDDAIHEGYVIKNPT 93 (110)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHCSS--CBGGGCCHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHTTCCCCCGG
T ss_pred HCCCCHHHHHHHHHHHHCCHHHHCC--CHHHHCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 2778999999999988601777381--068543699999999986301-5889999999999999999998879101987
Q ss_pred CCCCCCCCCCCC
Q ss_conf 222121222111
Q gi|255764498|r 85 DTLELPKKNHIL 96 (300)
Q Consensus 85 ~~i~~~k~~~~~ 96 (300)
.+++.|+..++.
T Consensus 94 ~~i~~~~~~~~~ 105 (110)
T 2khq_A 94 YKAELHASVLEH 105 (110)
T ss_dssp GGCCCCCGGGCC
T ss_pred CCCEECCCHHHH
T ss_conf 778746431121