HHsearch results for GI: 255764498 and protein with PDBid: 1a0p_A

>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
Probab=100.00  E-value=0  Score=325.35  Aligned_cols=276  Identities=39%  Similarity=0.594  Sum_probs=223.0

Q ss_pred             CHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             64664138999999999999999997544998688999999999999997799843532210112334321000122222
Q gi|255764498|r    2 MSSERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKD   81 (300)
Q Consensus         2 l~~~R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~   81 (300)
                      |..|||+|++|+++|+.+|+.|..||+.+++++.+++..++.+|+.++.+++.+++|++++++.|++||+|+.+.+++..
T Consensus        13 l~~er~ls~~T~~~Y~~~l~~f~~~l~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~t~~~~l~~l~~~~~~~~~~~~~~~   92 (290)
T 1a0p_A           13 LWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFRED   92 (290)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHHHHHHTSCCTTTCCHHHHHHHHHSCC-------CHHHHHHHHHHHHHHHHHTTSSSS
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             99986908999999999999999999885999376999999999999987799889999999999999999998243346


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf             21222212122211122332024699998643200125610277654311000122100134333432000001111000
Q gi|255764498|r   82 NPSDTLELPKKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTM  161 (300)
Q Consensus        82 np~~~i~~~k~~~~~~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i  161 (300)
                      +|+..+..++..+.........+....+...       ........++++++.+++.||||++|+++|+|+|||++++.+
T Consensus        93 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~tG~R~~Ei~~L~~~did~~~~~i  165 (290)
T 1a0p_A           93 DPSAHLASPKLPQRLPKDLSEAQVERLLQAP-------LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVV  165 (290)
T ss_dssp             CTTSCC----------CCCCHHHHHHHHHCS-------CTTSHHHHHHHHHHHHHHHHCCCHHHHTTCBGGGEETTTTEE
T ss_pred             CHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCHHHCCCCCCEE
T ss_conf             8176503777666676510089999987521-------001341189999999999958778999809499957579989


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHH
Q ss_conf             111222111110000124788753232100124-6777520012333222221111111012344201466764259885
Q gi|255764498|r  162 IIQGKGNKERLVILSPSALHALQMYKKTCSSMK-MTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHII  240 (300)
Q Consensus       162 ~v~~K~~k~R~ipi~~~~~~~l~~y~~~~~~~~-~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~l  240 (300)
                      .+.+|++++|.+|+.+.....+..+........ ......++++. .++.......+...++.+...+|+..++++||+|
T Consensus       166 ~~~~K~~k~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~H~l  244 (290)
T 1a0p_A          166 RVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPS-QRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL  244 (290)
T ss_dssp             EEECSSSCEEEEECCHHHHHHHHHHHHHTHHHHHTTCCCCBSSBC-TTSSBCCHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred             EECCCCCCEEEECCHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             866889940141132777778999998500111013445554533-3566542378999999999994578999874517


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf             889999999858888899998558998998999645999999999
Q gi|255764498|r  241 RHAFASHLLEGGADLRTIQILLGHTDISTTQIYTHLLPDKLQKLV  285 (300)
Q Consensus       241 Rht~at~l~~~G~~~~~v~~~lGH~s~~tT~~Y~~~~~~~~~~~~  285 (300)
                      ||||||.++++|+|+..||++|||+|++||++|+|++.+.+++++
T Consensus       245 Rht~at~l~~~G~~~~~i~~~lGH~s~~tT~~Y~~~~~~~lr~~~  289 (290)
T 1a0p_A          245 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLH  289 (290)
T ss_dssp             HHHHHHHHHHHCSSCGGGSSCC--CCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf             799999999878999999988189988999999878999999862