HHsearch results for GI: 255764498 and protein with PDBid: 1a0p_A
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
Probab=100.00 E-value=0 Score=325.35 Aligned_cols=276 Identities=39% Similarity=0.594 Sum_probs=223.0
Q ss_pred CHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 64664138999999999999999997544998688999999999999997799843532210112334321000122222
Q gi|255764498|r 2 MSSERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKD 81 (300)
Q Consensus 2 l~~~R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~ 81 (300)
|..|||+|++|+++|+.+|+.|..||+.+++++.+++..++.+|+.++.+++.+++|++++++.|++||+|+.+.+++..
T Consensus 13 l~~er~ls~~T~~~Y~~~l~~f~~~l~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~t~~~~l~~l~~~~~~~~~~~~~~~ 92 (290)
T 1a0p_A 13 LWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFRED 92 (290)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHHHHTSCCTTTCCHHHHHHHHHSCC-------CHHHHHHHHHHHHHHHHHTTSSSS
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99986908999999999999999999885999376999999999999987799889999999999999999998243346
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 21222212122211122332024699998643200125610277654311000122100134333432000001111000
Q gi|255764498|r 82 NPSDTLELPKKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTM 161 (300)
Q Consensus 82 np~~~i~~~k~~~~~~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i 161 (300)
+|+..+..++..+.........+....+... ........++++++.+++.||||++|+++|+|+|||++++.+
T Consensus 93 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~tG~R~~Ei~~L~~~did~~~~~i 165 (290)
T 1a0p_A 93 DPSAHLASPKLPQRLPKDLSEAQVERLLQAP-------LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVV 165 (290)
T ss_dssp CTTSCC----------CCCCHHHHHHHHHCS-------CTTSHHHHHHHHHHHHHHHHCCCHHHHTTCBGGGEETTTTEE
T ss_pred CHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCHHHCCCCCCEE
T ss_conf 8176503777666676510089999987521-------001341189999999999958778999809499957579989
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHH
Q ss_conf 111222111110000124788753232100124-6777520012333222221111111012344201466764259885
Q gi|255764498|r 162 IIQGKGNKERLVILSPSALHALQMYKKTCSSMK-MTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHII 240 (300)
Q Consensus 162 ~v~~K~~k~R~ipi~~~~~~~l~~y~~~~~~~~-~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~l 240 (300)
.+.+|++++|.+|+.+.....+..+........ ......++++. .++.......+...++.+...+|+..++++||+|
T Consensus 166 ~~~~K~~k~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~H~l 244 (290)
T 1a0p_A 166 RVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPS-QRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 244 (290)
T ss_dssp EEECSSSCEEEEECCHHHHHHHHHHHHHTHHHHHTTCCCCBSSBC-TTSSBCCHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred EECCCCCCEEEECCHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 866889940141132777778999998500111013445554533-3566542378999999999994578999874517
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf 889999999858888899998558998998999645999999999
Q gi|255764498|r 241 RHAFASHLLEGGADLRTIQILLGHTDISTTQIYTHLLPDKLQKLV 285 (300)
Q Consensus 241 Rht~at~l~~~G~~~~~v~~~lGH~s~~tT~~Y~~~~~~~~~~~~ 285 (300)
||||||.++++|+|+..||++|||+|++||++|+|++.+.+++++
T Consensus 245 Rht~at~l~~~G~~~~~i~~~lGH~s~~tT~~Y~~~~~~~lr~~~ 289 (290)
T 1a0p_A 245 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLH 289 (290)
T ss_dssp HHHHHHHHHHHCSSCGGGSSCC--CCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 799999999878999999988189988999999878999999862