HHsearch results for GI: 255764498 and protein with PDBid: 1a31_A
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP: d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A* 1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A* 1lpq_A* 1rr8_C* 1ej9_A*
Probab=93.82 E-value=0.15 Score=27.06 Aligned_cols=117 Identities=21% Similarity=0.343 Sum_probs=71.2
Q ss_pred HCCCHHHHHCCCCC------C------CCCCCHHHHHHH------HHCCCC--CCCCCCC--CCCHHHHHHHHHHHHHHH
Q ss_conf 10001221001343------3------343200000111------100011--1222111--110000124788753232
Q gi|255764498|r 131 LLIELLYATGMRVS------E------LVTLSAHTLNLT------ERTMII--QGKGNKE--RLVILSPSALHALQMYKK 188 (300)
Q Consensus 131 ~il~ll~~tGlR~~------E------i~~L~~~di~~~------~~~i~v--~~K~~k~--R~ipi~~~~~~~l~~y~~ 188 (300)
+++.|+-.+.+|+| | +|.|+..+|.+. ++.+.+ .||.+.. ..|++++.+...|..+..
T Consensus 303 ~av~LID~lalRVGNEky~~EnadTvG~tTLR~eHV~l~~e~~~~~~~i~fdFlGKdgir~~~~V~vd~~v~knLk~~~~ 382 (591)
T 1a31_A 303 VALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFME 382 (591)
T ss_dssp HHHHHHHHHCCCCCCCCCTTTSCCCCCGGGCBGGGCCEEEEETTEEEEEEEEEECGGGCEEEEEEECCHHHHHHHHHTTT
T ss_pred HHHHHHHHHCCCCCCHHHHHHCCCCEEECCCCHHHEEEECCCCCCCCEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHH
T ss_conf 99999987433047754453349977432473866353045567786389986067771676673479999999999986
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC--------CCCH-----
Q ss_conf 100124677752001233322222111111101234420146676425988588999999985--------8888-----
Q gi|255764498|r 189 TCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLLEG--------GADL----- 255 (300)
Q Consensus 189 ~~~~~~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~~~--------G~~~----- 255 (300)
. ..+ ...||- .++...++..++.+ + +++|...||=-.||..+.. +.++
T Consensus 383 ~----K~p--~d~LF~------~I~s~~VN~yLke~----m---~glTAKdFRTwnAS~tl~~~L~el~~~~~sv~eK~~ 443 (591)
T 1a31_A 383 N----KQP--EDDLFD------RLNTGILNKHLQDL----M---EGLTAKVFRTYNASITLQQQLKELTAPDENIPAKIL 443 (591)
T ss_dssp T----CCT--TSBTTT------TCCHHHHHHHHHHH----S---TTCCHHHHHHHHHHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred C----CCC--CCCCCC------CCCHHHHHHHHHHH----C---CCCCEEHHHHCCHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 6----897--012443------28868889999986----4---897400110101589999999857899999999999
Q ss_pred ------HHHHHHHCCCC
Q ss_conf ------89999855899
Q gi|255764498|r 256 ------RTIQILLGHTD 266 (300)
Q Consensus 256 ------~~v~~~lGH~s 266 (300)
..|+-+++|+.
T Consensus 444 ~yn~ANr~VAILCNHQR 460 (591)
T 1a31_A 444 SYNRANRAVAILCNHQR 460 (591)
T ss_dssp HHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHCCCC
T ss_conf 99999999999708988