HHsearch results for GI: 255764498 and protein with PDBid: 1z1b_A
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=100.00 E-value=1.1e-41 Score=260.52 Aligned_cols=255 Identities=19% Similarity=0.139 Sum_probs=198.2
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 64138999999999999999997544998688999999999999997799843532210112334321000122222212
Q gi|255764498|r 5 ERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPS 84 (300)
Q Consensus 5 ~R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np~ 84 (300)
.++++++|...|...++.|..|++ +.++.+++..++.+|+.++.+++ +++|+++.++.|+++|+||+..+++..||+
T Consensus 89 ~~~~~~~T~~~y~~~~~~l~~~~g--~~~l~~it~~~i~~~~~~~~~~~-~~~t~~~~~~~l~~~~~~a~~~~~~~~np~ 165 (356)
T 1z1b_A 89 SRGIKQKTLINYMSKIKAIRRGLP--DAPLEDITTKEIAAMLNGYIDEG-KAASAKLIRSTLSDAFREAIAEGHITTNHV 165 (356)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHSC--SCBGGGCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTTSCSSCTT
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHC--CCCHHHCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 659999999999999999999976--99968789999999999999849-999999999999999999998512124815
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 22212122211122332024699998643200125610277654311000122100134333432000001111000111
Q gi|255764498|r 85 DTLELPKKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQ 164 (300)
Q Consensus 85 ~~i~~~k~~~~~~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~ 164 (300)
..+..++... ....++.+|+.++++.+.... . ...+++.|++.||||++|+++|+|+||+.+...+ ..
T Consensus 166 ~~~~~~~~~~-~~~~lt~~E~~~l~~~~~~~~------~----~~~~~~~l~~~tG~R~~Ei~~L~~~di~~~~~~i-~~ 233 (356)
T 1z1b_A 166 AATRAAKSKV-RRSRLTADEYLKIYQAAESSP------C----WLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYV-EQ 233 (356)
T ss_dssp TTSCCCCCCC-CBCCCCHHHHHHHHHHTTSSC------H----HHHHHHHHHHHHCCCHHHHTTCBGGGEETTEEEE-EC
T ss_pred HHHHCCCCCC-CCCCCCHHHHHHHHHCCCCCC------H----HHHHHHHHHHHHCCCHHHHHCCCHHHHCCCCEEE-EE
T ss_conf 4320122357-787689899878752012476------5----7899999999968785457509299922464599-98
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC--CCCCHHHHHH
Q ss_conf 22211111000012478875323210012467775200123332222211111110123442014667--6425988588
Q gi|255764498|r 165 GKGNKERLVILSPSALHALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQK--KNISPHIIRH 242 (300)
Q Consensus 165 ~K~~k~R~ipi~~~~~~~l~~y~~~~~~~~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~--~~~t~H~lRh 242 (300)
+|+++.+.+|+++.+..++..+.+..........+.++|+. ..|.+++..+++..|+++++.+|+.. ..+++|+|||
T Consensus 234 ~K~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~t~H~lRh 312 (356)
T 1z1b_A 234 SKTGVKIAIPTALHIDALGISMKETLDKCKEILGGETIIAS-TRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRS 312 (356)
T ss_dssp TTTCCEEEEETTCEETTTTEEHHHHHHHHHHHTCSSBSSCC-TTSCCCCHHHHHHHHHHHHHHHTCCCSSBCCCTTHHHH
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf 88884246027187899999999999864401577650011-34666777899999999999859998889997586899
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHC
Q ss_conf 9999999858888899998558998998999645
Q gi|255764498|r 243 AFASHLLEGGADLRTIQILLGHTDISTTQIYTHL 276 (300)
Q Consensus 243 t~at~l~~~G~~~~~v~~~lGH~s~~tT~~Y~~~ 276 (300)
+ ||.++++|+|+..|+.+|||+|++||++|.+.
T Consensus 313 ~-a~~l~~~g~~~~~i~~~lGH~~~~~t~~Y~~~ 345 (356)
T 1z1b_A 313 L-SARLYEKQISDKFAQHLLGHKSDTMASQYRDD 345 (356)
T ss_dssp H-HHHHHHHHTCHHHHHHHHTCSSHHHHHHHTCC
T ss_pred H-HHHHHHCCCCHHHHHHHHCCCCHHHHHHHCCC
T ss_conf 9-99999869999999988189998999988047