HHsearch results for GI: 255764498 and protein with PDBid: 1z1b_A

>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=100.00  E-value=1.1e-41  Score=260.52  Aligned_cols=255  Identities=19%  Similarity=0.139  Sum_probs=198.2

Q ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             64138999999999999999997544998688999999999999997799843532210112334321000122222212
Q gi|255764498|r    5 ERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPS   84 (300)
Q Consensus         5 ~R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np~   84 (300)
                      .++++++|...|...++.|..|++  +.++.+++..++.+|+.++.+++ +++|+++.++.|+++|+||+..+++..||+
T Consensus        89 ~~~~~~~T~~~y~~~~~~l~~~~g--~~~l~~it~~~i~~~~~~~~~~~-~~~t~~~~~~~l~~~~~~a~~~~~~~~np~  165 (356)
T 1z1b_A           89 SRGIKQKTLINYMSKIKAIRRGLP--DAPLEDITTKEIAAMLNGYIDEG-KAASAKLIRSTLSDAFREAIAEGHITTNHV  165 (356)
T ss_dssp             TTTCCHHHHHHHHHHHHHHHHHSC--SCBGGGCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTTSCSSCTT
T ss_pred             HCCCCHHHHHHHHHHHHHHHHHHC--CCCHHHCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf             659999999999999999999976--99968789999999999999849-999999999999999999998512124815


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf             22212122211122332024699998643200125610277654311000122100134333432000001111000111
Q gi|255764498|r   85 DTLELPKKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQ  164 (300)
Q Consensus        85 ~~i~~~k~~~~~~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~  164 (300)
                      ..+..++... ....++.+|+.++++.+....      .    ...+++.|++.||||++|+++|+|+||+.+...+ ..
T Consensus       166 ~~~~~~~~~~-~~~~lt~~E~~~l~~~~~~~~------~----~~~~~~~l~~~tG~R~~Ei~~L~~~di~~~~~~i-~~  233 (356)
T 1z1b_A          166 AATRAAKSKV-RRSRLTADEYLKIYQAAESSP------C----WLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYV-EQ  233 (356)
T ss_dssp             TTSCCCCCCC-CBCCCCHHHHHHHHHHTTSSC------H----HHHHHHHHHHHHCCCHHHHTTCBGGGEETTEEEE-EC
T ss_pred             HHHHCCCCCC-CCCCCCHHHHHHHHHCCCCCC------H----HHHHHHHHHHHHCCCHHHHHCCCHHHHCCCCEEE-EE
T ss_conf             4320122357-787689899878752012476------5----7899999999968785457509299922464599-98


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC--CCCCHHHHHH
Q ss_conf             22211111000012478875323210012467775200123332222211111110123442014667--6425988588
Q gi|255764498|r  165 GKGNKERLVILSPSALHALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQK--KNISPHIIRH  242 (300)
Q Consensus       165 ~K~~k~R~ipi~~~~~~~l~~y~~~~~~~~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~--~~~t~H~lRh  242 (300)
                      +|+++.+.+|+++.+..++..+.+..........+.++|+. ..|.+++..+++..|+++++.+|+..  ..+++|+|||
T Consensus       234 ~K~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~t~H~lRh  312 (356)
T 1z1b_A          234 SKTGVKIAIPTALHIDALGISMKETLDKCKEILGGETIIAS-TRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRS  312 (356)
T ss_dssp             TTTCCEEEEETTCEETTTTEEHHHHHHHHHHHTCSSBSSCC-TTSCCCCHHHHHHHHHHHHHHHTCCCSSBCCCTTHHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf             88884246027187899999999999864401577650011-34666777899999999999859998889997586899


Q ss_pred             HHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHC
Q ss_conf             9999999858888899998558998998999645
Q gi|255764498|r  243 AFASHLLEGGADLRTIQILLGHTDISTTQIYTHL  276 (300)
Q Consensus       243 t~at~l~~~G~~~~~v~~~lGH~s~~tT~~Y~~~  276 (300)
                      + ||.++++|+|+..|+.+|||+|++||++|.+.
T Consensus       313 ~-a~~l~~~g~~~~~i~~~lGH~~~~~t~~Y~~~  345 (356)
T 1z1b_A          313 L-SARLYEKQISDKFAQHLLGHKSDTMASQYRDD  345 (356)
T ss_dssp             H-HHHHHHHHTCHHHHHHHHTCSSHHHHHHHTCC
T ss_pred             H-HHHHHHCCCCHHHHHHHHCCCCHHHHHHHCCC
T ss_conf             9-99999869999999988189998999988047