HHsearch results for GI: 255764498 and protein with PDBid: 2a3v_A
>2a3v_A Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str}
Probab=100.00 E-value=0 Score=285.04 Aligned_cols=264 Identities=30% Similarity=0.442 Sum_probs=207.7
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 6413899999999999999999754499868899999999999999779-984353221011233432100012222221
Q gi|255764498|r 5 ERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRK-LVTSSQRRKISVIRQFYNFLCYEGLRKDNP 83 (300)
Q Consensus 5 ~R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~-~s~~T~~~~~~~l~~~~~~~~~~~~~~~np 83 (300)
.|++|++|+++|..++++|+.|++.. .+.+++..++.+|+.++..++ .++++.+..+++++.++.++...+....++
T Consensus 15 ~r~~s~~T~~~Y~~~l~~f~~~~~~~--~~~~i~~~~i~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (320)
T 2a3v_A 15 TRYYAKKTIEAYLHWITRYIHFHNKK--HPSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFLYKEILKTPLSLEIR 92 (320)
T ss_dssp HTTCCHHHHHHHHHHHHHHHTTSSSC--CGGGCCHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHTSSCCCCTTCC
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHCCC--CHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 85968999999999999999997227--9323999999999999998489569999999999999998866403573356
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 22221212221112233202469999864320012561027765431100012210013433343200000111100011
Q gi|255764498|r 84 SDTLELPKKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMII 163 (300)
Q Consensus 84 ~~~i~~~k~~~~~~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v 163 (300)
+..++.++..|++++.+|+..+.... ..++++++.+++.||+|.+|+++|+|+|++++.+.+.+
T Consensus 93 ---~~~~k~~k~~~~~l~~~e~~~~~~~~-------------~~~~~~~~~ll~~tG~R~~E~~~l~~~d~~~~~~~i~~ 156 (320)
T 2a3v_A 93 ---FQRSQLERKLPVVLTRDEIRRLLEIV-------------DPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRI 156 (320)
T ss_dssp ---CCCCCCCCCCCCCCCHHHHHHHTTSS-------------CHHHHHHHHHHHHSCCCHHHHHTCBGGGEETTTTEEEE
T ss_pred ---CCCCCCCCCCCCCCCHHHHHHHHHCC-------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf ---76678788899767899999998556-------------81789999999982873788888787751033323036
Q ss_pred -CCCCCCCCCCHHHHHHHHHHHHHHHHHCCC------CCCC--------------------CCCCCCCCC----------
Q ss_conf -122211111000012478875323210012------4677--------------------752001233----------
Q gi|255764498|r 164 -QGKGNKERLVILSPSALHALQMYKKTCSSM------KMTG--------------------NDLWLFPSS---------- 206 (300)
Q Consensus 164 -~~K~~k~R~ipi~~~~~~~l~~y~~~~~~~------~~~~--------------------~~~~lf~~~---------- 206 (300)
.+|+++.|.+|+++.+.+.+.+|+...... .... ...++|...
T Consensus 157 ~~~k~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (320)
T 2a3v_A 157 WQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDV 236 (320)
T ss_dssp EEETTTEEEEEECCGGGHHHHHHHHHHHHHHHHHHTSCTTBCCSCCSTTCTTTSTTGGGCGGGSBSSBCSSCEEETTTTE
T ss_pred EECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHCCCCEECCCCCCCCCCCCCC
T ss_conf 63678701387265999999999999856543223321134421203777664535301013310024555555543233
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 32222211111110123442014667642598858899999998588888999985589989989996459999999999
Q gi|255764498|r 207 TKTGHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLLEGGADLRTIQILLGHTDISTTQIYTHLLPDKLQKLVQ 286 (300)
Q Consensus 207 ~~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~~~G~~~~~v~~~lGH~s~~tT~~Y~~~~~~~~~~~~~ 286 (300)
..+.+++...++..++++++.+|++. ++|||+|||||||.|+++|+|+..||++|||+|++||++|+|+.++.++++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~gl~~-~~s~H~lRHtfaT~ll~~g~~l~~vq~~lGHss~~tT~~Y~hl~~~~~~~~~~ 315 (320)
T 2a3v_A 237 MRRHHMNETVLQKAVRRSAQEAGIEK-TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDRGASGVLS 315 (320)
T ss_dssp EECCBCCHHHHHHHHHHHHHTTCCCS-CCCHHHHHHHHHHHHHHTTCCHHHHHHHHTCSSHHHHGGGCC------CCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 23564658999999999999859999-98887778999999998789999999883899889999998279978999971
Q ss_pred H
Q ss_conf 8
Q gi|255764498|r 287 D 287 (300)
Q Consensus 287 ~ 287 (300)
.
T Consensus 316 ~ 316 (320)
T 2a3v_A 316 P 316 (320)
T ss_dssp H
T ss_pred H
T ss_conf 7