HHsearch results for GI: 255764498 and protein with PDBid: 3m4a_A
>3m4a_A Putative type I topoisomerase; type IB, topib, protein-DNA complex, isomerase-DNA complex; HET: DNA; 1.65A {Deinococcus radiodurans} PDB: 2f4q_A*
Probab=97.81 E-value=6.8e-05 Score=46.47 Aligned_cols=132 Identities=19% Similarity=0.216 Sum_probs=87.3
Q ss_pred HHCCCHHHHHCCCCCC-----------CCCCCHHHHHHHHHCCCC--CCCCCCCCCCHHH-HHHHHHHHHHHHHHCCCCC
Q ss_conf 1100012210013433-----------343200000111100011--1222111110000-1247887532321001246
Q gi|255764498|r 130 FLLIELLYATGMRVSE-----------LVTLSAHTLNLTERTMII--QGKGNKERLVILS-PSALHALQMYKKTCSSMKM 195 (300)
Q Consensus 130 ~~il~ll~~tGlR~~E-----------i~~L~~~di~~~~~~i~v--~~K~~k~R~ipi~-~~~~~~l~~y~~~~~~~~~ 195 (300)
.+++.|+..|++|+|- ++.|+..+|.++++.+.+ .||.|....+-|. +.+...|.... ..
T Consensus 125 A~~v~Lld~~~iRVGne~Y~~en~SyGlTTLr~~HV~i~~~~i~~~F~GK~Gv~~~~~i~d~~l~~~l~~l~------~~ 198 (346)
T 3m4a_A 125 ALMTRLLHVARFRVGSDIYARQHKTYGLSTLRQRHVVVDGNTVTFRFKGKHGVSQHKATSDRTLAANMQKLL------DL 198 (346)
T ss_dssp HHHHHHHHHHCCCCCCHHHHHHHCCCCGGGCBGGGEEEETTEEEEEEECGGGCEEEEEECCHHHHHHHHHHH------TS
T ss_pred HHHHHHHHHHCCCCCCCCCHHHCCCCCEEEEECCCEEEECCEEEEEEECCCCEEEEEEECCHHHHHHHHHHH------HC
T ss_conf 999999998433068821012149815002100335886896999997688738887746889999999998------45
Q ss_pred CCCCCCCCCCCCCC--CCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHH-----HCCCC-------------H
Q ss_conf 77752001233322--2221111111012344201466764259885889999999-----85888-------------8
Q gi|255764498|r 196 TGNDLWLFPSSTKT--GHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLL-----EGGAD-------------L 255 (300)
Q Consensus 196 ~~~~~~lf~~~~~~--~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~-----~~G~~-------------~ 255 (300)
++.+.|+|.....+ .+++...++..++++. | .+|.-+||=-.||.++ +.+.+ +
T Consensus 199 ~g~~lf~~~~~~~g~~~~v~s~dVN~YLk~~~---g----~~TaKdFRTw~at~~~~~~L~~~~~~~s~~~~kk~i~~ai 271 (346)
T 3m4a_A 199 PGPWLFQTVDAGGGERRRIHSTELNAYLREVI---G----PFTAKDFRTWGGTLLAAEYLAQQGTESSERQAKKVLVDCV 271 (346)
T ss_dssp CSSBSCEEECCCC-CEEECCHHHHHHHHHHHH---T----TSCHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHH
T ss_pred CCCHHHHHCCCCCCCEECCCHHHHHHHHHHHC---C----CCCHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 78153310015688710167999999999866---9----9873130343549999999983678899899999999999
Q ss_pred HHHHHHHCCCCHHHHH-HHHH
Q ss_conf 8999985589989989-9964
Q gi|255764498|r 256 RTIQILLGHTDISTTQ-IYTH 275 (300)
Q Consensus 256 ~~v~~~lGH~s~~tT~-~Y~~ 275 (300)
..|++.|||+ +++.. -|+|
T Consensus 272 ~~VA~~LgnT-paVcRksYI~ 291 (346)
T 3m4a_A 272 KFVADDLGNT-PAVTRGSYIC 291 (346)
T ss_dssp HHHHHHHTSC-HHHHHHHTSC
T ss_pred HHHHHHHCCC-HHHHHHHCCC
T ss_conf 9999984897-5445564378