HHSEARCH alignment of GI: 255764498 and SCOP domain: d1a0pa1

Alignment
>d1a0pa1 a.60.9.1 (A:3-100) Recombinase XerD {Escherichia coli [TaxId: 562]}
Probab=99.71  E-value=2.1e-18  Score=123.64  Aligned_cols=86  Identities=30%  Similarity=0.522  Sum_probs=81.8

Q ss_pred             CHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             64664138999999999999999997544998688999999999999997799843532210112334321000122222
Q gi|255764498|r    2 MSSERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKD   81 (300)
Q Consensus         2 l~~~R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~   81 (300)
                      |..|||+|++|+++|..+++.|..||...++++.+++..++..|+.++.++|++++|+++++++|++||+|+..+|+++.
T Consensus        13 l~~erg~S~~Ti~aY~~dl~~f~~~l~~~~~~~~~i~~~~i~~yl~~l~~~g~s~~Ti~r~lsalr~ff~~l~~~~~i~~   92 (98)
T d1a0pa1          13 LWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFRED   92 (98)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHHHHHHTSCCTTTCCHHHHHHHHHSCC-------CHHHHHHHHHHHHHHHHHTTSSSS
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99884959999999999999999988761644111558999999999985245510599999999999999999789376


Q ss_pred             CCCCCC
Q ss_conf             212222
Q gi|255764498|r   82 NPSDTL   87 (300)
Q Consensus        82 np~~~i   87 (300)
                      ||+..|
T Consensus        93 nP~~~i   98 (98)
T d1a0pa1          93 DPSAHL   98 (98)
T ss_dssp             CTTSCC
T ss_pred             CCCCCC
T ss_conf             833419


SCOP domain information

class: All alpha proteins
fold: SAM domain-like
superfamily: lambda integrase-like, N-terminal domain
family: lambda integrase-like, N-terminal domain
domain: Recombinase XerD
species: Escherichia coli [TaxId: 562]