HHSEARCH alignment of GI: 255764498 and SCOP domain: d1a0pa2

Alignment
>d1a0pa2 d.163.1.1 (A:111-292) Recombinase XerD {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=1.1e-35  Score=224.22  Aligned_cols=180  Identities=43%  Similarity=0.642  Sum_probs=147.2

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf             23320246999986432001256102776543110001221001343334320000011110001112221111100001
Q gi|255764498|r   98 KTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQGKGNKERLVILSP  177 (300)
Q Consensus        98 ~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~~K~~k~R~ipi~~  177 (300)
                      +.||+||+++|+++...       .....+||+++|.++++||||++|+++|+|+||+++++.+.+.+|++|.|.++.+.
T Consensus         1 k~Lt~eei~~ll~~~~~-------~~~~~lRd~~l~~l~~~tG~R~~ei~~L~~~~i~~~~~~i~~~~~~~k~r~~~~~~   73 (182)
T d1a0pa2           1 KDLSEAQVERLLQAPLI-------DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE   73 (182)
T ss_dssp             CCCCHHHHHHHHHCSCT-------TSHHHHHHHHHHHHHHHHCCCHHHHTTCBGGGEETTTTEEEEECSSSCEEEEECCH
T ss_pred             CCCCHHHHHHHHHCCCC-------CCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCEEEEEECCCCEEEEEEECC
T ss_conf             98999999999827463-------88187999999999999677647742021414114432899836898012575200


Q ss_pred             HHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf             24788753232100124-67775200123332222211111110123442014667642598858899999998588888
Q gi|255764498|r  178 SALHALQMYKKTCSSMK-MTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLLEGGADLR  256 (300)
Q Consensus       178 ~~~~~l~~y~~~~~~~~-~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~~~G~~~~  256 (300)
                      .....+..++....... ......++++ ..++.+++.++++..++++++.+|++.++++||+|||||||.|+++|+|+.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~H~~Rht~at~l~~~G~~~~  152 (182)
T d1a0pa2          74 EAVYWLETYLEHGRPWLLNGVSIDVLFP-SQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLR  152 (182)
T ss_dssp             HHHHHHHHHHHHTHHHHHTTCCCCBSSB-CTTSSBCCHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHCSSCG
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCHH
T ss_conf             1335566655311230012345654210-235773668999999999999849985783614146589996556499999


Q ss_pred             HHHHHHCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf             99998558998998999645999999999
Q gi|255764498|r  257 TIQILLGHTDISTTQIYTHLLPDKLQKLV  285 (300)
Q Consensus       257 ~v~~~lGH~s~~tT~~Y~~~~~~~~~~~~  285 (300)
                      .|+++|||+|++||++|++++.+++++++
T Consensus       153 ~I~~~lGH~s~~tt~~Y~~~~~e~~re~~  181 (182)
T d1a0pa2         153 VVQMLLGHSDLSTTQIYTHVATERLRQLH  181 (182)
T ss_dssp             GGSSCC--CCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf             99999589988999987687999999860


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA breaking-rejoining enzymes
superfamily: DNA breaking-rejoining enzymes
family: Lambda integrase-like, catalytic core
domain: Recombinase XerD
species: Escherichia coli [TaxId: 562]