HHSEARCH alignment of GI: 255764498 and SCOP domain: d1f44a1

Alignment

Probab=99.45  E-value=1.1e-13  Score=96.27  Aligned_cols=75  Identities=13%  Similarity=0.102  Sum_probs=70.8

Q ss_pred             CCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             964664138999999999999999997544998688999999999999997799843532210112334321000
Q gi|255764498|r    1 MMSSERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCY   75 (300)
Q Consensus         1 ~l~~~R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~   75 (300)
                      ||..|+++|+||+++|..+|+.|..||...+.++.+++.+++..|+.++...|++++|+++++++|+.|++++..
T Consensus        11 ~l~~~~~~S~nT~~aY~~dl~~f~~w~~~~~~~~l~~~~~~v~~yl~~l~~~g~s~sTi~R~lsair~f~r~~g~   85 (110)
T d1f44a1          11 MFRDRQAFSEHTWKMLLSVCRSWAAWCKLNNRKWFPAEPEDVRDYLLYLQARGLAVKTIQQHLGQLNMLHRRSGL   85 (110)
T ss_dssp             CCSCGGGSCHHHHHHHHHHHHHHHHHHHHTTCCTTTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             999986538989999999999999988651123462345378999999986388840899999999999998699

SCOP domain information

class: All alpha proteins
fold: SAM domain-like
superfamily: lambda integrase-like, N-terminal domain
family: lambda integrase-like, N-terminal domain
domain: Cre recombinase
species: Bacteriophage P1 [TaxId: 10678]