HHSEARCH alignment of GI: 255764498 and SCOP domain: d1k4ta2

Alignment
>d1k4ta2 d.163.1.2 (A:431-640,A:713-765) Eukaryotic DNA topoisomerase I, catalytic core {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.61  E-value=0.0045  Score=34.51  Aligned_cols=117  Identities=22%  Similarity=0.310  Sum_probs=72.7

Q ss_pred             HHCCCHHHHHCCCCC------C------CCCCCHHHHHHH------HHCCCC--CCCCCCC--CCCHHHHHHHHHHHHHH
Q ss_conf             110001221001343------3------343200000111------100011--1222111--11000012478875323
Q gi|255764498|r  130 FLLIELLYATGMRVS------E------LVTLSAHTLNLT------ERTMII--QGKGNKE--RLVILSPSALHALQMYK  187 (300)
Q Consensus       130 ~~il~ll~~tGlR~~------E------i~~L~~~di~~~------~~~i~v--~~K~~k~--R~ipi~~~~~~~l~~y~  187 (300)
                      .+++.|+-.+.+|+|      |      ++.|+..+|.+.      ++.+.+  .||.+..  ..|++++.+...|....
T Consensus        46 A~al~LiD~~~lRvGneky~~en~dT~G~tTLr~eHv~l~~~~~~~~~~i~~~F~GK~gvr~~~~v~~~~~v~~~l~~~~  125 (263)
T d1k4ta2          46 AVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFM  125 (263)
T ss_dssp             HHHHHHHHHSCCCCCCCCCTTTSCCCCCGGGCBGGGEEEEEEETTEEEEEEEEEECGGGCEEEEEEECCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCHHHEEECCCCCCCCCEEEEEEECCCCEEEEEEEECCHHHHHHHHHHH
T ss_conf             99999999737316880013235897602002221157614656778558999744776389999835889999999998


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHH-----HCCCC---H----
Q ss_conf             21001246777520012333222221111111012344201466764259885889999999-----85888---8----
Q gi|255764498|r  188 KTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLL-----EGGAD---L----  255 (300)
Q Consensus       188 ~~~~~~~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~-----~~G~~---~----  255 (300)
                      +..      .+...||      ..++...++..++.+    |   +++|...||=-.||.++     +.+.+   .    
T Consensus       126 ~~k------~~~d~LF------~~i~s~~vN~yLk~~----~---~g~TaKdFRTw~As~~~~~~L~~~~~~~~~~~~k~  186 (263)
T d1k4ta2         126 ENK------QPEDDLF------DRLNTGILNKHLQDL----M---EGLTAKVFRTYNASITLQQQLKELTAPDENIPAKI  186 (263)
T ss_dssp             TTC------CTTSBSS------TTCCHHHHHHHHHHH----S---TTCCTTHHHHHHHHHHHHHHHHHHCCTTCCHHHHH
T ss_pred             HCC------CCCHHHC------CCCCHHHHHHHHHHH----C---CCCCEEECCCCCHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf             766------9821111------668889999999996----6---99721302134469999999983799986799999


Q ss_pred             -------HHHHHHHCCC
Q ss_conf             -------8999985589
Q gi|255764498|r  256 -------RTIQILLGHT  265 (300)
Q Consensus       256 -------~~v~~~lGH~  265 (300)
                             ..|+.+++|+
T Consensus       187 ~~~n~Anr~VA~lcnHq  203 (263)
T d1k4ta2         187 LSYNRANRAVAILCNHQ  203 (263)
T ss_dssp             HHHHHHHHHHHHHTTCB
T ss_pred             HHHHHHHHHHHHHHCCC
T ss_conf             99999999999982887


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA breaking-rejoining enzymes
superfamily: DNA breaking-rejoining enzymes
family: Eukaryotic DNA topoisomerase I, catalytic core
domain: Eukaryotic DNA topoisomerase I, catalytic core
species: Human (Homo sapiens) [TaxId: 9606]