RPSBLAST alignment for GI: 255764498 and conserved domain: TIGR02249

>gnl|CDD|131303 TIGR02249, integrase_gron, integron integrase. Members of this family are integrases associated with integrons (and super-integrons), which are systems for incorporating and expressing cassettes of laterally transferred DNA. Incorporation occurs at an attI site. A super-integron, as in Vibrio sp., may include over 100 cassettes. This family belongs to the phage integrase family (pfam00589) that also includes recombinases XerC (TIGR02224) and XerD (TIGR02225), which are bacterial housekeeping proteins. Within this family of integron integrases, some are designated by class, e.g. IntI4, a class 4 integron integrase from Vibrio cholerae N16961. Length = 315
 Score =  129 bits (327), Expect = 7e-31
 Identities = 84/307 (27%), Positives = 136/307 (44%), Gaps = 58/307 (18%)

Query: 9   SINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLS-QRKLVTSSQRRKISVIR 67
           +  T  AY   +K    F N +  S    +   + ++L+ L+   K+  S+Q + ++ + 
Sbjct: 15  AKRTEEAYLHWIKRFIRFHNKRHPSTMGDT--EVEAFLSDLAVDGKVAASTQNQALNALL 72

Query: 68  QFY-NFLCYEGLRKDNPSDTLELPKKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKR 126
             Y   L    L         + P+K   LP  L ++ +  LLE           G+++ 
Sbjct: 73  FLYKEILKTP-LSLMERFVRAKRPRK---LPVVLTREEVRRLLEHL--------EGKYR- 119

Query: 127 VRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMII-QGKGNKERLVILSPS------- 178
               L+ +LLY +GMR+ E + L    ++     + I QGKG K+R V L          
Sbjct: 120 ----LIAKLLYGSGMRLMECLRLRIQDIDFDYGEIRIRQGKGGKDRTVTLPKELIPPLRE 175

Query: 179 ------ALHALQMYKKTCSSMKMTGND------------LWLFPSST-----KTG----- 210
                 A H   + +                         +LFPS       ++G     
Sbjct: 176 QIELARAYHEADLAEGYGGVYLPHALARKYPNAPKEWGWQYLFPSHRLSRDPESGVIRRH 235

Query: 211 HLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLLEGGADLRTIQILLGHTDISTT 270
           H++     R ++    RAGI+K  ++ H +RH+FA+HLLE GAD+RT+Q LLGH+D+ TT
Sbjct: 236 HINETTIQRAVRRAVERAGIEK-PVTCHTLRHSFATHLLESGADIRTVQELLGHSDVKTT 294

Query: 271 QIYTHLL 277
           QIYTH+L
Sbjct: 295 QIYTHVL 301