RPSBLAST alignment for GI: 255764498 and conserved domain: TIGR02225

>gnl|CDD|162772 TIGR02225, recomb_XerD, tyrosine recombinase XerD. The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerD, one of two closely related chromosomal proteins along with XerC (TIGR02224). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and with homologs of XerD on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerD, as some apparent XerD examples score below the trusted and noise cutoff scores. XerC and XerD interact with cell division protein FtsK. Length = 291
 Score =  299 bits (769), Expect = 5e-82
 Identities = 126/295 (42%), Positives = 171/295 (57%), Gaps = 12/295 (4%)

Query: 1   MMSSERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQR 60
            +  ER  S NTL AY+RDL++   FL  + I L       ++ +L  L +  L   S  
Sbjct: 6   YLWVERGLSQNTLEAYRRDLEKFLEFLEERGIDLEEVDRGDIVDFLAELKEAGLSARSIA 65

Query: 61  RKISVIRQFYNFLCYEGLRKDNPSDTLELPKKNHILPKTLHKDTIANLLEQAKIEAENPA 120
           R +S +R FY FL  EG+R+D+PS  +E PK    LPK L  + +  LL    ++     
Sbjct: 66  RALSALRSFYRFLLREGIREDDPSALIEPPKVARKLPKVLTVEEVEALLAAPDVDTPLG- 124

Query: 121 PGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQGKGNKERLVILSPSAL 180
                 +R   ++ELLYATG+RVSELV L    +NL E  + ++GKGNKERLV L   A+
Sbjct: 125 ------LRDRAMLELLYATGLRVSELVGLRLEDVNLDEGFVRVRGKGNKERLVPLGEEAI 178

Query: 181 HALQMYKKT---CSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISP 237
            AL+ Y K        K       LF +  + G LSRQ   + LK  A RAGI +K ISP
Sbjct: 179 EALERYLKEARPLLLKKKVKESDALFLNR-RGGPLSRQGVWKILKEYAKRAGI-EKPISP 236

Query: 238 HIIRHAFASHLLEGGADLRTIQILLGHTDISTTQIYTHLLPDKLQKLVQDYHPLA 292
           H +RH+FA+HLLE GADLR +Q LLGH DISTTQIYTH+  ++L+++ + +HP A
Sbjct: 237 HTLRHSFATHLLENGADLRVVQELLGHADISTTQIYTHVARERLKEVHKKHHPRA 291