RPSBLAST alignment for GI: 255764498 and conserved domain: cd01187
>gnl|CDD|29508 cd01187, INT_SG4, INT_SG4, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 4, N- and C-terminal domains. The CD contains mainly predicted bacterial integrase/recombinases for which not much biochemical characterization is available.. Length = 299
Score = 85.3 bits (211), Expect = 2e-17
Identities = 57/238 (23%), Positives = 93/238 (39%), Gaps = 15/238 (6%)
Query: 57 SSQRRKISVIRQFYNFLCYEGLRKDNPSDTLELPKKNHILPKTLHKDTIANLLEQAKIEA 116
++ ++ V+R+F R + P L + P + I LL A
Sbjct: 59 ATWAGRLGVVRRFARHRRRADPRTEVPPADLFPRRPRRPTPYIYTDEEIQRLLAAA---L 115
Query: 117 ENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMII-QGKGNKERLVIL 175
+ P + L LL TG+R+ E + L ++L + + K K RLV L
Sbjct: 116 QLPPTSGLRPWTYRTLFGLLAVTGLRLGEALRLRLSDVDLDSGILTVRDSKFGKSRLVPL 175
Query: 176 SPSALHALQMYKKTCSSMKMTGNDLWLFPSSTKT--GHLSRQVFARDLKALAARAGIQK- 232
S AL+ Y + + F SS + +VF + + R Q+
Sbjct: 176 HASTRAALRDYLARRDRLLPAPDSSAFFVSSRGGRLSYGGHRVFYALSREIGLRGWAQRG 235
Query: 233 KNISPHIIRHAFASHLL----EGGADL-RTIQIL---LGHTDISTTQIYTHLLPDKLQ 282
+ H +RH FA L GAD+ R + +L LGH +I+ T Y H P+ ++
Sbjct: 236 RGPRLHDLRHRFAVTRLTRWYRAGADVERKLPVLATYLGHANITDTYWYLHASPELME 293