RPSBLAST alignment for GI: 255764498 and conserved domain: cd01193
>gnl|CDD|29514 cd01193, INT_IntI, IntI (E2) integrases, site-specific tyrosine recombinases, DNA breaking-rejoining enzymes, N- and C-terminal domains. This CD includes integrases which are components of multiresistant integrons and mediate recombination between a proximal attI site and a secondary target called the attC (or 59-base element) present on various mobile gene cassettes. Integron-integrases are present in many natural occurring mobile elements, including transposons and conjugative plasmids. Vibrio, Shewanella, Xanthomonas and Pseudomonas species harbor chromosomal super-integrons. All integron-integrases carry large inserts unlike the TnpF ermF-like proteins also seen in this group.. Length = 242
Score = 153 bits (389), Expect = 4e-38
Identities = 79/253 (31%), Positives = 125/253 (49%), Gaps = 25/253 (9%)
Query: 33 SLSAASTNHLISYLNHLS-QRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPSDTLELPK 91
S + ++L L+ + + S+Q + +S + FY R + P+
Sbjct: 6 SPDELGEEDVRAFLTLLAVEGNVSASTQNQALSALLFFYRHTL---KRDLPWLQRIRRPR 62
Query: 92 KNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSA 151
K LP L + + LL ++ L++ LLY G+R+SE + L
Sbjct: 63 KPRKLPVVLSPEEVRRLLGALT------------GLKHRLILSLLYGCGLRLSECLRLRV 110
Query: 152 HTLNLTERTMII-QGKGNKERLVILSPSALHALQMYKKTCSSMKMTGNDLWLFPSSTKT- 209
++ + + QGKG K+R V+L + L L+ Y K ++ WLFPS+ ++
Sbjct: 111 KDIDFDRGQIRVRQGKGGKDRYVMLPEALLELLRAYWKRARALGRERPWQWLFPSTRRSR 170
Query: 210 ------GHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLLEGGADLRTIQILLG 263
HLS + R LK +AGI K+ ++PH +RH+FA+HLLE G D+RTIQ LLG
Sbjct: 171 DPVERRHHLSERTLQRALKKAVEQAGIDKR-VTPHTLRHSFATHLLEAGYDIRTIQELLG 229
Query: 264 HTDISTTQIYTHL 276
H+D+ TT IYTH+
Sbjct: 230 HSDLKTTMIYTHV 242