RPSBLAST alignment for GI: 255764498 and conserved domain: cd01193

>gnl|CDD|29514 cd01193, INT_IntI, IntI (E2) integrases, site-specific tyrosine recombinases, DNA breaking-rejoining enzymes, N- and C-terminal domains. This CD includes integrases which are components of multiresistant integrons and mediate recombination between a proximal attI site and a secondary target called the attC (or 59-base element) present on various mobile gene cassettes. Integron-integrases are present in many natural occurring mobile elements, including transposons and conjugative plasmids. Vibrio, Shewanella, Xanthomonas and Pseudomonas species harbor chromosomal super-integrons. All integron-integrases carry large inserts unlike the TnpF ermF-like proteins also seen in this group.. Length = 242
 Score =  153 bits (389), Expect = 4e-38
 Identities = 79/253 (31%), Positives = 125/253 (49%), Gaps = 25/253 (9%)

Query: 33  SLSAASTNHLISYLNHLS-QRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPSDTLELPK 91
           S        + ++L  L+ +  +  S+Q + +S +  FY        R       +  P+
Sbjct: 6   SPDELGEEDVRAFLTLLAVEGNVSASTQNQALSALLFFYRHTL---KRDLPWLQRIRRPR 62

Query: 92  KNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSA 151
           K   LP  L  + +  LL                 ++  L++ LLY  G+R+SE + L  
Sbjct: 63  KPRKLPVVLSPEEVRRLLGALT------------GLKHRLILSLLYGCGLRLSECLRLRV 110

Query: 152 HTLNLTERTMII-QGKGNKERLVILSPSALHALQMYKKTCSSMKMTGNDLWLFPSSTKT- 209
             ++     + + QGKG K+R V+L  + L  L+ Y K   ++       WLFPS+ ++ 
Sbjct: 111 KDIDFDRGQIRVRQGKGGKDRYVMLPEALLELLRAYWKRARALGRERPWQWLFPSTRRSR 170

Query: 210 ------GHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLLEGGADLRTIQILLG 263
                  HLS +   R LK    +AGI K+ ++PH +RH+FA+HLLE G D+RTIQ LLG
Sbjct: 171 DPVERRHHLSERTLQRALKKAVEQAGIDKR-VTPHTLRHSFATHLLEAGYDIRTIQELLG 229

Query: 264 HTDISTTQIYTHL 276
           H+D+ TT IYTH+
Sbjct: 230 HSDLKTTMIYTHV 242