RPSBLAST alignment of GI: 255764498 and protein with PDBid: 3nkh
>3nkh_A Integrase; alpha-fold, MRSA protein, structural genomics, PSI-2, protei structure initiative; 2.50A {Staphylococcus aureus subsp} Length = 244
Score = 106 bits (265), Expect = 6e-24
Identities = 46/227 (20%), Positives = 91/227 (40%), Gaps = 28/227 (12%)
Query: 87 LELPKKNHILPKT--LHKDTIANLLEQAKIEAENPAPGQWKRVRIF--LLIELLYATGMR 142
++L +N L + I ++++ +A+ G KR +F L+ E GMR
Sbjct: 11 VDLGTENLYFQSNAYLELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMR 70
Query: 143 VSELVTLSAHTLNLTERTMIIQG-------------------KGNKERLVILSPSALHAL 183
+ E++ + ++ +++ I G + R + LS + L
Sbjct: 71 IGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEIL 130
Query: 184 QMYKKTCSSMKMTGN---DLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHII 240
+ + + ++ K + + F + L+ A GI K +S HI+
Sbjct: 131 KKAILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDK-EVSSHIL 189
Query: 241 RHAFASHLLEGGADLRTIQILLGHTDISTT-QIYTHLLPDKLQKLVQ 286
RH+ S L + G L+ I +GH+D TT IY+H+ + ++
Sbjct: 190 RHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMN 236