HHsearch alignment for GI: 255764499 and conserved domain: pfam03279
>pfam03279 Lip_A_acyltrans Bacterial lipid A biosynthesis acyltransferase.
Probab=98.74 E-value=2e-06 Score=57.51 Aligned_cols=164 Identities=16% Similarity=0.254 Sum_probs=96.9
Q ss_pred CCCEEEEEEEECC-----CCEEEEEECCHHHHHHHHHHH-HHC-CCEEEEEECCCCCCCCHHEEE----CCEEEECCCCH
Q ss_conf 7818997400004-----670699817801201232245-412-421213421224331011000----01034213101
Q gi|255764499|r 58 KTTVQIEGVDNIP-----STGCIIAIKHQSSWDTFYFLT-CIQ-DPIFILKHTVFYIPIIGFYCF----KQGMIGVKRNS 126 (266)
Q Consensus 58 gi~v~v~G~e~l~-----~~~~iiv~NH~S~~D~~~l~~-~~~-~~~~i~K~el~~~P~~g~~~~----~~g~i~vdR~~ 126 (266)
T Consensus 102 ~~~v~~~g~e~l~~a~~~gkgvIl~~~H~gnwE~~~~~l~~~~~~~~~vyr~--~~n~~~d~~~~~~R~~~g~~~i~~~~ 179 (295)
T pfam03279 102 AKRTEVIGLENIKKALAQGRGVILLVPHFGNWDLPGLVLAQYYPGMATMFPN--LKNPLLDWLITSGRERFGGKMLPRKN 179 (295)
T ss_pred CCEEEEECHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEEC--CCCHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 6738992899999999769988999716364889999999849975999867--76888999999999867986885663
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCCCCC-CCCCCCCC-------HHHHHHHHHHCCCEEEEEEEEEEEECCCCCCCC
Q ss_conf 0000001344334442013302340256435-85200210-------035676554359457878652025446898634
Q gi|255764499|r 127 KNLDMKSIINRAKKAVMDNRQLIIYPEGTRR-SPGDMPIY-------KKGIAHIYESLSVPVIPIVVHAGLFWPRKKFMR 198 (266)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~g~~i~iFPEGTr~-~~~~~~~f-------k~G~f~lA~~~~~pIvPv~i~~~~~~~~~~~~~ 198 (266)
T Consensus 180 ---~~r~li----~~Lk~g~~v~~l~DQ~~~~~~gv~v~FFG~~a~t~~g~~~LA~k~~apvvp~~~~r---~~~g---- 245 (295)
T pfam03279 180 ---GIKGLI----KALRQGEVVYYLPDQDLGPKDSVFVPFFGTPKATTTSPAKLARKTGAAVIPVFPWR---NGDG---- 245 (295)
T ss_pred ---HHHHHH----HHHHCCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEE---ECCC----
T ss_conf ---299999----98502564799733456888871786659675263799999999889389999999---7899----
Q ss_pred CCCEEEEEECCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 5857999964888898--997899999999999999999999875078778
Q gi|255764499|r 199 YPGNFKVRVLKPIPAG--IPRKIFFAELQEKMEHASNNLLLETIRDNPQLY 247 (266)
Q Consensus 199 ~~g~v~v~~~~pI~~~--~~~~~~~~~l~~~i~~~~~~l~~e~~~~~~~~~ 247 (266)
T Consensus 246 --~~y~~~~~~~~~~~~~~~~~~~--------~~~~n~~lE~~Ir~~Peqw 286 (295)
T pfam03279 246 --SGYTAIVHPALDLTPTEDVEQI--------AQAMNKIVEKFIAPHPEQY 286 (295)
T ss_pred --CEEEEEEEECCCCCCCCCHHHH--------HHHHHHHHHHHHHCCHHHH
T ss_conf --7799999716668999999999--------9999999999997395974