Query gi|255764499|ref|YP_003064993.2| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 266 No_of_seqs 172 out of 4029 Neff 7.8 Searched_HMMs 33803 Date Wed Jun 1 18:00:32 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 255764499.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1iuq_A Glycerol-3-phosphate a 100.0 1.3E-32 4E-37 212.1 7.4 184 60-243 38-269 (288) 2 >3ilv_A Glutamine-dependent NA 73.7 4.5 0.00013 19.6 3.9 42 143-184 180-221 (273) 3 >1uf5_A N-carbamyl-D-amino aci 68.1 7.2 0.00021 18.4 3.9 45 140-184 182-234 (303) 4 >2e11_A Hydrolase; dimethylars 63.5 9.3 0.00028 17.7 3.8 42 143-184 157-202 (266) 5 >1f89_A 32.5 kDa protein YLR35 63.5 9.5 0.00028 17.6 4.1 49 136-185 176-224 (291) 6 >3dla_A Glutamine-dependent NA 52.4 15 0.00044 16.5 4.9 45 140-184 188-233 (322) 7 >1j31_A Hypothetical protein P 52.2 15 0.00044 16.5 6.0 40 140-184 157-196 (262) 8 >3hkx_A Amidase; alpha-beta-BE 49.4 10 0.00031 17.4 2.1 44 139-184 175-218 (283) 9 >2vhh_A CG3027-PA; hydrolase; 48.8 17 0.0005 16.2 4.0 23 133-155 65-87 (324) 10 >1ems_A Nitfhit, NIT-fragIle h 40.8 15 0.00044 16.5 1.8 44 141-185 181-224 (285) 11 >2w1v_A Nitrilase-2, nitrilase 40.6 23 0.00067 15.4 4.6 46 139-185 163-208 (276) 12 >3jur_A EXO-poly-alpha-D-galac 39.6 15 0.00043 16.5 1.6 11 145-155 58-68 (448) 13 >1auo_A Carboxylesterase; hydr 36.7 9.6 0.00028 17.6 0.3 16 178-193 1-16 (30) 14 >2rfb_A Cytochrome P450; heme, 29.2 35 0.001 14.3 2.4 27 223-249 142-168 (201) 15 >1pq4_A Periplasmic binding pr 23.2 45 0.0013 13.6 4.5 69 106-183 8-78 (82) 16 >2o1e_A YCDH; alpha-beta prote 20.1 53 0.0016 13.3 3.2 69 106-183 7-79 (82) No 1 >>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} (A:80-367) Probab=99.97 E-value=1.3e-32 Score=212.14 Aligned_cols=184 Identities=12% Similarity=0.100 Sum_probs=134.3 Q ss_pred CEEEEEEEECC-CCEEEEEECCHHHHHHHHHHHHHC--------CCEEEEEECCCCCCCCHHEEECCEEEECCCCHHH-- Q ss_conf 18997400004-670699817801201232245412--------4212134212243310110000103421310100-- Q gi|255764499|r 60 TVQIEGVDNIP-STGCIIAIKHQSSWDTFYFLTCIQ--------DPIFILKHTVFYIPIIGFYCFKQGMIGVKRNSKN-- 128 (266) Q Consensus 60 ~v~v~G~e~l~-~~~~iiv~NH~S~~D~~~l~~~~~--------~~~~i~K~el~~~P~~g~~~~~~g~i~vdR~~~~-- 128 (266) ++.++|.++++ ++++|+++||+|++|++++..++. ++.|++|+++++.|++||+++..|+|||||++.. T Consensus 38 ~~~~~~~~~~~~~~~~i~v~NH~s~~D~~~l~~~l~~~~~~~~~~~~~va~~~l~~~p~~g~~~~~~g~i~v~R~~~~~~ 117 (288) T 1iuq_A 38 SLFKDIEEKLQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICVYSKKHXFD 117 (288) T ss_dssp HHHHHHHHHHHTTCEEEEEECCCCTTHHHHHHHHHTTTCHHHHHHCEEEECTHHHHCTTTHHHHHTSEEEECCCGGGTTS T ss_pred HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCHHHCEEEEEEHHHCCCHHHHHHHHHCCEEEEECCCCCCC T ss_conf 89999999643799889986874330599999997335633202338997603403567899998689779964787777 Q ss_pred ----------HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCC------CCCHH----HHHHHHHHCCCEEEEEEEEEE Q ss_conf ----------0000134433444201330234025643585200------21003----567655435945787865202 Q gi|255764499|r 129 ----------LDMKSIINRAKKAVMDNRQLIIYPEGTRRSPGDM------PIYKK----GIAHIYESLSVPVIPIVVHAG 188 (266) Q Consensus 129 ----------~~~~~~~~~~~~~~~~g~~i~iFPEGTr~~~~~~------~~fk~----G~f~lA~~~~~pIvPv~i~~~ 188 (266) ++.+++.+.+.+.+++|.+++|||||||+.++.. .+|++ |++++|.++++||+|+.+++. T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~iliFPEGtrs~~~~~~~~~~~~~f~~g~~~~~~~la~~~~~pv~pv~i~~~ 197 (288) T 1iuq_A 118 IPELTETKRKANTRSLKEXALLLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNXRRLIQHSDVPGHLFPLALL 197 (288) T ss_dssp SGGGHHHHHHHHHHHHHHHHHHHHHCCCEEEECTTCSCCCBCTTTCCBCCCCCCHHHHHHHHHHHHTSSSCEEEEEEEEE T ss_pred CHHHHHHHHHCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEC T ss_conf 61344554111199999999999768859999468874676444576167645530467899987623999548967660 Q ss_pred ---EECCC--------CCCCCCCCEEEEEECCCCCCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf ---54468--------986345857999964888898------99789999999999999999999987507 Q gi|255764499|r 189 ---LFWPR--------KKFMRYPGNFKVRVLKPIPAG------IPRKIFFAELQEKMEHASNNLLLETIRDN 243 (266) Q Consensus 189 ---~~~~~--------~~~~~~~g~v~v~~~~pI~~~------~~~~~~~~~l~~~i~~~~~~l~~e~~~~~ 243 (266) ..++. ..+...++++++++|+||++. +..++..+.+++.+++.++....|..... T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (288) T 1iuq_A 198 CHDIXPPPSQVEIEIGEKRVIAFNGAGLSVAPEISFEEIAATHKNPEEVREAYSKALFDSVAXQYNVLKTAI 269 (288) T ss_dssp CGGGSCCC----------CCCCCBCCEEEECCCCCHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHT T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 454469975333223422456776359997798567775322125689999999999999999999999987 No 2 >>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} (A:1-273) Probab=73.69 E-value=4.5 Score=19.56 Aligned_cols=42 Identities=12% Similarity=0.081 Sum_probs=23.3 Q ss_pred HCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEE Q ss_conf 013302340256435852002100356765543594578786 Q gi|255764499|r 143 MDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPVIPIV 184 (266) Q Consensus 143 ~~g~~i~iFPEGTr~~~~~~~~fk~G~f~lA~~~~~pIvPv~ 184 (266) ..+..+++.|-++-...+.......-+-..|.+++++++=+. T Consensus 180 ~~~~~li~~~~~~~~~~~~~~~~~~~~~~~a~e~~~~vv~an 221 (273) T 3ilv_A 180 EKGATLVLNPSASHFAFGKSAIRYDLVIGGSERFDCTYVYAN 221 (273) T ss_dssp GGTCSEEEEEECCBCCTTHHHHHHHHHHHHHHHTTSEEEEEE T ss_pred HCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEECC T ss_conf 503221026654443212578888888876531022145214 No 3 >>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} (A:) Probab=68.13 E-value=7.2 Score=18.37 Aligned_cols=45 Identities=7% Similarity=-0.164 Sum_probs=22.6 Q ss_pred HHHHCCCEEEEECCCCCCCCCCCCCCH--------HHHHHHHHHCCCEEEEEE Q ss_conf 442013302340256435852002100--------356765543594578786 Q gi|255764499|r 140 KAVMDNRQLIIYPEGTRRSPGDMPIYK--------KGIAHIYESLSVPVIPIV 184 (266) Q Consensus 140 ~~~~~g~~i~iFPEGTr~~~~~~~~fk--------~G~f~lA~~~~~pIvPv~ 184 (266) .....|-.+++.|-..-...+...... .-.-.-|.+.+++++=.. T Consensus 182 ~~~~~gadlii~p~~~~~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~~v~an 234 (303) T 1uf5_A 182 VMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNGAWSAAAG 234 (303) T ss_dssp HHHHTTCSEEEEEECCBSCCTTCGGGGGGHHHHHHHHHHHHHHHHTCEEEEEE T ss_pred HHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECC T ss_conf 67628988999704556545444210011001246666666552453033136 No 4 >>2e11_A Hydrolase; dimethylarsenic inhibitor complex, cacodylate; 1.73A {Xanthomonas campestris PV} (A:) Probab=63.51 E-value=9.3 Score=17.70 Aligned_cols=42 Identities=7% Similarity=-0.239 Sum_probs=20.0 Q ss_pred HCCCEEEEECCCCCCC----CCCCCCCHHHHHHHHHHCCCEEEEEE Q ss_conf 0133023402564358----52002100356765543594578786 Q gi|255764499|r 143 MDNRQLIIYPEGTRRS----PGDMPIYKKGIAHIYESLSVPVIPIV 184 (266) Q Consensus 143 ~~g~~i~iFPEGTr~~----~~~~~~fk~G~f~lA~~~~~pIvPv~ 184 (266) ..|..+++.|-..... ......+..-+-..|.+++++++=+. T Consensus 157 ~~ga~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~en~~~vv~~n 202 (266) T 2e11_A 157 DVERPGQLDFDLQLFVANWPSARAYAWKTLLRARAIENLCFVAAVN 202 (266) T ss_dssp SSSSTTSBSCSEEEEEECCCGGGHHHHHHHHHHHHHHTTSEEEEEE T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCC T ss_conf 8641000042300132214776502555777776542374200133 No 5 >>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} (A:) Probab=63.50 E-value=9.5 Score=17.65 Aligned_cols=49 Identities=14% Similarity=0.021 Sum_probs=29.5 Q ss_pred HHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEE Q ss_conf 43344420133023402564358520021003567655435945787865 Q gi|255764499|r 136 NRAKKAVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPVIPIVV 185 (266) Q Consensus 136 ~~~~~~~~~g~~i~iFPEGTr~~~~~~~~fk~G~f~lA~~~~~pIvPv~i 185 (266) +..+...++|..+++.|-.+....+.... ..-+-..|.+++++++-+.- T Consensus 176 e~~r~l~~~ga~ii~~p~~~~~~~~~~~~-~~~~~~rA~e~~~~vv~~n~ 224 (291) T 1f89_A 176 ELAMLSARKGAFAMIYPSAFNTVTGPLHW-HLLARSRAVDNQVYVMLCSP 224 (291) T ss_dssp HHHHHHHHTTEEEEEEECCCBTTHHHHHH-HHHHHHHHHHHTSEEEEECC T ss_pred HHHHHHHHCCCEEEEECCCCCCCCCHHHH-HHHHHHHHHHCCCEEEEECC T ss_conf 99999997899599987888787761230-10466688855707999844 No 6 >>3dla_A Glutamine-dependent NAD(+) synthetase; glutaminase, ammonia tunneling, enzyme, glutamine-amido transferase, ATP-binding, ligase; HET: NXX ONL; 2.35A {Mycobacterium tuberculosis} (A:1-322) Probab=52.41 E-value=15 Score=16.52 Aligned_cols=45 Identities=2% Similarity=-0.183 Sum_probs=23.7 Q ss_pred HHHHCCCEEEEECCCCCCCC-CCCCCCHHHHHHHHHHCCCEEEEEE Q ss_conf 44201330234025643585-2002100356765543594578786 Q gi|255764499|r 140 KAVMDNRQLIIYPEGTRRSP-GDMPIYKKGIAHIYESLSVPVIPIV 184 (266) Q Consensus 140 ~~~~~g~~i~iFPEGTr~~~-~~~~~fk~G~f~lA~~~~~pIvPv~ 184 (266) .....|..+++.|--.-... ........-+-..|.+++++++-+. T Consensus 188 ~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n 233 (322) T 3dla_A 188 AEAALAGATVLANLSGSPITIGRAEDRRLLARSASARCLAAYVYAA 233 (322) T ss_dssp HHHHHTTCCEEEEECCCCCCTTHHHHHHHHHHHHHHHTTSEEEEEC T ss_pred HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE T ss_conf 9998636753236655552101234788998999975287268863 No 7 >>1j31_A Hypothetical protein PH0642; alpha-beta-BETA-alpha sandwich, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii OT3} (A:) Probab=52.17 E-value=15 Score=16.49 Aligned_cols=40 Identities=10% Similarity=0.009 Sum_probs=23.9 Q ss_pred HHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEE Q ss_conf 442013302340256435852002100356765543594578786 Q gi|255764499|r 140 KAVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPVIPIV 184 (266) Q Consensus 140 ~~~~~g~~i~iFPEGTr~~~~~~~~fk~G~f~lA~~~~~pIvPv~ 184 (266) ...+.|..++++|-.+-.. ..+...-..|.+++++++-+. T Consensus 157 ~~~~~g~diil~ps~~~~~-----~~~~~~~~~A~e~~~~vv~~n 196 (262) T 1j31_A 157 TLALKGAEIIAHPANLVXP-----YAPRAXPIRALENRVYTITAD 196 (262) T ss_dssp HHHHTTCSEEEEECCCCSS-----CHHHHHHHHHHHHTCEEEEEC T ss_pred HHHHHCCCCEEECCCCCHH-----HHHHHHHHHHHHCCCEEEEEE T ss_conf 9987445617741546336-----565568888763587599996 No 8 >>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich, hydrolase; 1.66A {Nesterenkonia SP} (A:) Probab=49.40 E-value=10 Score=17.41 Aligned_cols=44 Identities=11% Similarity=0.098 Sum_probs=26.2 Q ss_pred HHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEE Q ss_conf 4442013302340256435852002100356765543594578786 Q gi|255764499|r 139 KKAVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPVIPIV 184 (266) Q Consensus 139 ~~~~~~g~~i~iFPEGTr~~~~~~~~fk~G~f~lA~~~~~pIvPv~ 184 (266) ....+.|-.+++.|-.+........ ..-+-.-|.+++++++=+. T Consensus 175 ~~~~~~g~dil~~~s~~~~~~~~~~--~~~~~~rA~e~~~~vv~~n 218 (283) T 3hkx_A 175 RAAAARGAQLVLVPTALAGDETSVP--GILLPARAVENGITLAYAN 218 (283) T ss_dssp HHHHHTTCSEEEEECCCBSCCTHHH--HTHHHHHHHHHTCEEEEEC T ss_pred HHHHHCCCCEEEECCCCCCCCCCCC--HHHHHHHHHHCCCCEEEEE T ss_conf 9997377878999157889864211--0167889986468429975 No 9 >>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A (A:36-359) Probab=48.80 E-value=17 Score=16.17 Aligned_cols=23 Identities=13% Similarity=0.065 Sum_probs=10.0 Q ss_pred HHHHHHHHHHHCCCEEEEECCCC Q ss_conf 13443344420133023402564 Q gi|255764499|r 133 SIINRAKKAVMDNRQLIIYPEGT 155 (266) Q Consensus 133 ~~~~~~~~~~~~g~~i~iFPEGT 155 (266) .+.+.+.+..++|-.+++|||-. T Consensus 65 ~~~~~i~~A~~~gadlvV~PE~~ 87 (324) T 2vhh_A 65 KVKTMIKAAAEAGCNIVCTQEAW 87 (324) T ss_dssp HHHHHHHHHHHTTCSEEECCTTT T ss_pred HHHHHHHHHHHCCCCEEECCCCC T ss_conf 99999999998699399846213 No 10 >>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} (A:1-285) Probab=40.81 E-value=15 Score=16.53 Aligned_cols=44 Identities=9% Similarity=0.065 Sum_probs=26.1 Q ss_pred HHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEE Q ss_conf 420133023402564358520021003567655435945787865 Q gi|255764499|r 141 AVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPVIPIVV 185 (266) Q Consensus 141 ~~~~g~~i~iFPEGTr~~~~~~~~fk~G~f~lA~~~~~pIvPv~i 185 (266) ...+|..+++.|-+..... ....+..-+..-|.+++++++-+.. T Consensus 181 ~~~~gadii~~psa~~~~~-~~~~~~~~~~~~a~en~~~~v~~n~ 224 (285) T 1ems_A 181 NRKRGAQLLSFPSAFTLNT-GLAHWETLLRARAIENQCYVVAAAQ 224 (285) T ss_dssp HHHTTCSEEECCBCCCHHH-HHHHHHHHHHHHHHHHTCEEEECBB T ss_pred HHHCCCEEEEECCCCCCCC-CHHHHHHHHHHHHHHCCCEEEEECC T ss_conf 9877983999907888874-5999999999999986977999987 No 11 >>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus} (A:) Probab=40.57 E-value=23 Score=15.41 Aligned_cols=46 Identities=15% Similarity=0.071 Sum_probs=30.4 Q ss_pred HHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEE Q ss_conf 44420133023402564358520021003567655435945787865 Q gi|255764499|r 139 KKAVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPVIPIVV 185 (266) Q Consensus 139 ~~~~~~g~~i~iFPEGTr~~~~~~~~fk~G~f~lA~~~~~pIvPv~i 185 (266) ....++|..+++.|-++-+..+. ......+-..|.+.+++++.+.- T Consensus 163 ~~~~~~gadli~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~vv~an~ 208 (276) T 2w1v_A 163 QIYAQRGCQLLVYPGAFNLTTGP-AHWELLQRARAVDNQVYVATASP 208 (276) T ss_dssp HHHHHTTEEEEEEECCCCTTHHH-HHHHHHHHHHHHHHTCEEEEECC T ss_pred HHHHHCCCCEEEECCCCCCCCCH-HHHHHHHHHHHHHCCCEEEEECC T ss_conf 99998699889745767877537-78888999999973965999725 No 12 >>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase, hydrolase; 2.05A {Thermotoga maritima} (A:) Probab=39.58 E-value=15 Score=16.54 Aligned_cols=11 Identities=36% Similarity=0.597 Sum_probs=4.6 Q ss_pred CCEEEEECCCC Q ss_conf 33023402564 Q gi|255764499|r 145 NRQLIIYPEGT 155 (266) Q Consensus 145 g~~i~iFPEGT 155 (266) |...+.||+|| T Consensus 58 ggg~v~iP~Gt 68 (448) T 3jur_A 58 GGGRLIVPEGV 68 (448) T ss_dssp TCEEEEECSSE T ss_pred CCCEEEECCCE T ss_conf 99899999987 No 13 >>1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} (A:51-80) Probab=36.73 E-value=9.6 Score=17.63 Aligned_cols=16 Identities=25% Similarity=0.623 Sum_probs=12.9 Q ss_pred CEEEEEEEEEEEECCC Q ss_conf 4578786520254468 Q gi|255764499|r 178 VPVIPIVVHAGLFWPR 193 (266) Q Consensus 178 ~pIvPv~i~~~~~~~~ 193 (266) +|..||++|+|..+|. T Consensus 1 AP~~pVTiN~G~~Mpa 16 (30) T 1auo_A 1 APTRPVTINGGYEMPS 16 (30) T ss_dssp CCEEEEGGGTTEEEEC T ss_pred HHCCCCCCCCCCCCCC T ss_conf 1104513489855576 No 14 >>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus} PDB: 2rfc_A* (A:68-230,A:283-320) Probab=29.17 E-value=35 Score=14.30 Aligned_cols=27 Identities=11% Similarity=0.260 Sum_probs=16.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 999999999999999987507877888 Q gi|255764499|r 223 ELQEKMEHASNNLLLETIRDNPQLYIP 249 (266) Q Consensus 223 ~l~~~i~~~~~~l~~e~~~~~~~~~~~ 249 (266) ++++++++.+++...|+.+-.|..|.| T Consensus 142 e~q~klr~Eid~vi~E~lRl~p~~~~p 168 (201) T 2rfb_A 142 DIIDDALKNRSGFVEETLRYYSEMHLA 168 (201) T ss_dssp GGHHHHHHCHHHHHHHHHHHSCSCCCT T ss_pred CHHHHHHHHCCCCHHHHHHCCCCCCCC T ss_conf 101122010023312310102688776 No 15 >>1pq4_A Periplasmic binding protein component of AN ABC type zinc uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} (A:189-270) Probab=23.18 E-value=45 Score=13.63 Aligned_cols=69 Identities=9% Similarity=0.207 Sum_probs=38.5 Q ss_pred CCCCCHHEEECCEEEE--CCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEE Q ss_conf 4331011000010342--13101000000134433444201330234025643585200210035676554359457878 Q gi|255764499|r 106 YIPIIGFYCFKQGMIG--VKRNSKNLDMKSIINRAKKAVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPVIPI 183 (266) Q Consensus 106 ~~P~~g~~~~~~g~i~--vdR~~~~~~~~~~~~~~~~~~~~g~~i~iFPEGTr~~~~~~~~fk~G~f~lA~~~~~pIvPv 183 (266) .-+-|+++++..|.-. +--.+...+-+++. ...+.+++...-+||.|=.-+. +.+-.+|.++|++++++ T Consensus 8 ~H~af~Y~a~~ygl~~~~~i~~~~eps~~~i~-~l~~~ik~~~i~~if~e~~~~~--------k~~~~ia~etg~~~~~l 78 (82) T 1pq4_A 8 FHPSWAYFARDYNLVQIPIEVEGQEPSAQELK-QLIDTAKENNLTMVFGETQFST--------KSSEAIAAEIGAGVELL 78 (82) T ss_dssp SSCCCHHHHHHTTCEEEESCBTTBCCCHHHHH-HHHHHHHTTTCCEEEEETTSCC--------HHHHHHHHHHTCEEEEE T ss_pred CCCHHHHHHHHCCCCEEECCCCCCCCCHHHHH-HHHHHHHHCCCCEEEECCCCCC--------HHHHHHHHHHCCCEEEE T ss_conf 27408999996799352044678899989999-9999999749988997289991--------99999999809987987 No 16 >>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis} (A:190-271) Probab=20.09 E-value=53 Score=13.25 Aligned_cols=69 Identities=10% Similarity=0.122 Sum_probs=36.7 Q ss_pred CCCCCHHEEECCEEEE--CCC--CHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEE Q ss_conf 4331011000010342--131--010000001344334442013302340256435852002100356765543594578 Q gi|255764499|r 106 YIPIIGFYCFKQGMIG--VKR--NSKNLDMKSIINRAKKAVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPVI 181 (266) Q Consensus 106 ~~P~~g~~~~~~g~i~--vdR--~~~~~~~~~~~~~~~~~~~~g~~i~iFPEGTr~~~~~~~~fk~G~f~lA~~~~~pIv 181 (266) ..+-|+++++..|.-. +-. .+...+.+++.+..+ .+++...=+||.|=.-. + +.+-.+|.++|++++ T Consensus 7 ~H~af~Yf~~~ygl~~~~~~~~~~~~~ps~~~i~~l~~-~ik~~~i~~if~e~~~~-~-------k~~~~ia~~~g~~v~ 77 (82) T 2o1e_A 7 QHTAFGYLAKEYGLKQVPIAGLSPDQEPSAASLAKLKT-YAKEHNVKVIYFEEIAS-S-------KVADTLASEIGAKTE 77 (82) T ss_dssp SSCTTHHHHHHTTCEEEECSSCCSSSCCCHHHHHHHHH-HTTSSCCCEEECSSCCC-H-------HHHHHHHHHTCCEEE T ss_pred ECCHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHH-HHHHCCCCEEEEECCCC-C-------HHHHHHHHHHCCCEE T ss_conf 52136668874684476402356522213357999998-76525886899948889-4-------999999997199765 Q ss_pred EE Q ss_conf 78 Q gi|255764499|r 182 PI 183 (266) Q Consensus 182 Pv 183 (266) ++ T Consensus 78 ~l 79 (82) T 2o1e_A 78 VL 79 (82) T ss_dssp CC T ss_pred EE T ss_conf 54 Done!