RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|255764499|ref|YP_003064993.2| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Candidatus Liberibacter asiaticus str. psy62] (266 letters) >gnl|CDD|153251 cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins. Length = 184 Score = 126 bits (318), Expect = 7e-30 Identities = 50/174 (28%), Positives = 87/174 (50%), Gaps = 6/174 (3%) Query: 61 VQIEGVDNIPSTG-CIIAIKHQSSWDTFYFLTCIQDPI-FILKHTVFYIPIIGFYCFKQG 118 V++EG++N+P G II HQS D + PI F+ K +F IP +G+ G Sbjct: 12 VRVEGLENLPPKGPVIIVANHQSYLDPLVLGAALPRPIRFVAKKELFKIPFLGWLLRLLG 71 Query: 119 MIGVKRNSKNLDMKSIINRAKKAVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSV 178 I + R + +++ A +A+ + ++I+PEGTR G++ +K G + + V Sbjct: 72 AIPIDRGNGRSAREAL-REAIEALKEGESVVIFPEGTRSRDGELLPFKSGAFRLAKEAGV 130 Query: 179 PVIPIVVH-AGLFWPRKKFMRYPGNFKVRVLKPIPA--GIPRKIFFAELQEKME 229 P++P+ + P+ K + PG VR+ +PIP + EL+EK+ Sbjct: 131 PIVPVAISGTWGSLPKGKKLPRPGRVTVRIGEPIPPEGLELAEEDRKELREKVR 184 >gnl|CDD|30553 COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]. Length = 255 Score = 115 bits (287), Expect = 2e-26 Identities = 54/238 (22%), Positives = 100/238 (42%), Gaps = 10/238 (4%) Query: 10 IFNIFFFIHIFIVSMIVLLLCCFITRKQCLYIAKKWAHVNQLLLKYITKTTVQIEGVDNI 69 + I + + ++ L L + + ++W LLL + V++EG++N+ Sbjct: 1 LRLALLLILVILFLLLPLPLALIALFRLRRPVLRRWLRFLVLLLLLLFGLRVEVEGLENL 60 Query: 70 PSTG-CIIAIKHQSSWDTFYFLTCIQDPI---FILKHTVFYIPIIGFYCFKQGMIGVKRN 125 P G ++ HQS D + F+ K +F +P++G+ G I V R Sbjct: 61 PKGGPALVVANHQSFLDPLLLSLALPRRGPVRFVAKKELFKVPLLGWLLRLLGAIPVDRE 120 Query: 126 SKNLDMKSIINRAKKAVMDNRQLIIYPEGTRRSPGD-MPIYKKGIAHIYESLSVPVIPIV 184 + + + + + R L+I+PEGTR G+ + +K+G A + VP++P+ Sbjct: 121 NPDDET--LRAAVARLKAGGRSLVIFPEGTRSRGGEELLPFKRGAARLALEAGVPIVPVA 178 Query: 185 VHAGLFWPRKKFMRYPGNFKVRVLKPIPAGIPRKIFFAELQEKMEHASNNLLLETIRD 242 + G KVR+ PI + EL E +E + +LLE + Sbjct: 179 IVGAEELF---PSLKKGKVKVRIGPPIDISALPEPLLPELAEAVEQLARPILLELLPR 233 >gnl|CDD|38059 KOG2848, KOG2848, KOG2848, 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid transport and metabolism]. Length = 276 Score = 104 bits (260), Expect = 3e-23 Identities = 63/249 (25%), Positives = 113/249 (45%), Gaps = 9/249 (3%) Query: 5 FIRSLIFNIFFFIHIFIVSMIVLLLCCFITRKQCLYIAKKWAHVNQLLLKYITKTTVQIE 64 + R + + I S + LL + +IAK W H +KY+ ++ Sbjct: 27 YFRCAFYGAICSFYGVIASPVCLL--RGGRSVENHFIAKLWFHS----MKYLLGLRFEVR 80 Query: 65 GVDNIPSTG-CIIAIKHQSSWDTFYFLTCI-QDPIFILKHTVFYIPIIGFYCFKQGMIGV 122 G +N+P + +I HQSS D + ++ + I K ++FY+PI G + G++ + Sbjct: 81 GEENLPKSKPAVIVSNHQSSLDILGMGSIWPKNCVVIAKRSLFYVPIFGLAMYLSGVVFI 140 Query: 123 KRNSKNLDMKSIINRAKKAVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPVIP 182 R+ + + ++ A++ +NR++ ++PEGTR G + +KKG H+ VP++P Sbjct: 141 DRSRREKAIDTLDKCAERMKKENRKVWVFPEGTRNKEGRLLPFKKGAFHLAVQAQVPIVP 200 Query: 183 IVVHA-GLFWPRKKFMRYPGNFKVRVLKPIPAGIPRKIFFAELQEKMEHASNNLLLETIR 241 +V + G F+ K+ + GN VRVL PIP K L ++ A E Sbjct: 201 VVFSSYGDFYSTKEKVFNSGNVIVRVLPPIPTEGLTKDDVDVLSDECRSAMLETFKEISA 260 Query: 242 DNPQLYIPA 250 + Sbjct: 261 EAAVRNATL 269 >gnl|CDD|110550 pfam01553, Acyltransferase, Acyltransferase. This family contains acyltransferases involved in phospholipid biosynthesis and other proteins of unknown function. This family also includes tafazzin, the Barth syndrome gene. Length = 132 Score = 68.1 bits (167), Expect = 2e-12 Identities = 34/132 (25%), Positives = 66/132 (50%), Gaps = 9/132 (6%) Query: 61 VQIEGVDNIPS-TGCIIAIKHQSSWDTFYFLTCI-----QDPIFILKHTVFYIPIIGFYC 114 V++ G++N+P I+ HQS D L+ + + P+F+ K +F +P++G+ Sbjct: 2 VEVHGLENLPRKGPAIVVANHQSWLD-PLVLSLLLYKRPRRPVFVAKDELFTVPLLGWLM 60 Query: 115 FKQGMIGVKRNSKNLDMKSIINRAKKAVMDNRQLI-IYPEGTRRSPGDMPIYKKGIAHIY 173 G I + R S + + ++ +L+ I+PEGTR G++ +KKG + Sbjct: 61 RLLGHIFIDRKKAKDARAS-LRELVELLLRAGKLVVIFPEGTRSRNGELLPFKKGAFRLA 119 Query: 174 ESLSVPVIPIVV 185 VP++P+ + Sbjct: 120 REAGVPIVPVAI 131 >gnl|CDD|36718 KOG1505, KOG1505, KOG1505, Lysophosphatidic acid acyltransferase LPAAT and related acyltransferases [Lipid transport and metabolism]. Length = 346 Score = 57.6 bits (139), Expect = 3e-09 Identities = 38/167 (22%), Positives = 67/167 (40%), Gaps = 12/167 (7%) Query: 3 MIFIRSLIFNIFFFIHIFIVSMIVLLLCCFITRKQC--LYIAKKWAHVNQLLLKYITKTT 60 + + L+ + +VS IVL L + + LY + + Sbjct: 1 LFLLSGLVIAFIQLVVFVLVSAIVLQLFSKLLWRLLYKLYSGLLLFLASWYAGSEVNGYG 60 Query: 61 VQIEGVDNIPSTGCIIAIKHQSSWDTFYFLTCIQDP------IFILKHTVFYIPIIGFYC 114 + G +IA HQS D Y T Q +LK ++ Y+PI G+ Sbjct: 61 DDVTGDKYGKERALLIA-NHQSEVDWLYLWTYAQRKGVLGNVKIVLKKSLKYLPIFGWGM 119 Query: 115 FKQGMIGVKRNSKNLD--MKSIINRAKKAVMDNRQLIIYPEGTRRSP 159 + G I ++RN + + + S++ K + D L+++PEGTR + Sbjct: 120 WFHGFIFLERNWEKDEKTLISLLKHLKDSP-DPYWLLLFPEGTRFTE 165 >gnl|CDD|153250 cd07988, LPLAT_ABO13168-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ABO13168. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Acinetobacter baumannii ATCC 17978 locus ABO13168 putative acyltransferase, and similar proteins. Length = 163 Score = 51.4 bits (124), Expect = 2e-07 Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 20/127 (15%) Query: 75 IIAIKHQSSWDTFYFLTCI----QDPIFILKHTVFYIPIIGFYCFKQGMIGVKRNSKN-- 128 +I H S+WD L F+ KH++F P +G + G I V R+ Sbjct: 24 VIGAPHTSNWDFVLGLLAAFALGLKISFLGKHSLFKPP-LGPFMRWLGGIPVDRSRAGGL 82 Query: 129 LD-MKSIINRAKKAVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPVIPIVVHA 187 ++ + R ++ V L I PEGTR K G HI VP++ + + Sbjct: 83 VEQVVEEFRRREEFV-----LAIAPEGTRSKVDKW---KTGFYHIARGAGVPILLVYLD- 133 Query: 188 GLFWPRK 194 + RK Sbjct: 134 ---YKRK 137 >gnl|CDD|153252 cd07990, LPLAT_LCLAT1-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as Lysocardiolipin acyltransferase 1 (LCLAT1) or 1-acyl-sn-glycerol-3-phosphate acyltransferase and similar proteins. Length = 193 Score = 50.7 bits (122), Expect = 4e-07 Identities = 34/154 (22%), Positives = 57/154 (37%), Gaps = 29/154 (18%) Query: 51 LLLKYITKTTVQIEGVDNIPSTG-CIIAIKHQSSWDTFYFLTCIQDPI------FILKHT 103 L ++++ V + G + +I H+S D +LK + Sbjct: 2 FLFEWLSGVKVVVYGDEPKLPKERALIISNHRSEVDWLVLWMLADRFGRLGRLKIVLKDS 61 Query: 104 VFYIPIIGFYCFKQGMIGVKRNSKNLDMKSIINRAK--KAVMDNRQLIIYPEGTRRSP-- 159 + Y P+ G+ I +KR + D K+I + K K + L+I+PEGTR + Sbjct: 62 LKYPPLGGWGWQLGEFIFLKRKWEK-DEKTIKRQLKRLKDSPEPFWLLIFPEGTRFTEEK 120 Query: 160 ----------GDMPIYK-------KGIAHIYESL 176 +P K KG I E+L Sbjct: 121 KERSQEFAEKNGLPPLKHVLLPRTKGFVAILETL 154 >gnl|CDD|153244 cd06551, LPLAT, Lysophospholipid acyltransferases (LPLATs) of glycerophospholipid biosynthesis. Lysophospholipid acyltransferase (LPLAT) superfamily members are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis. These proteins catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this superfamily are LPLATs such as glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB), 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), lysophosphatidylcholine acyltransferase 1 (LPCAT-1), lysophosphatidylethanolamine acyltransferase (LPEAT, also known as, MBOAT2, membrane-bound O-acyltransferase domain-containing protein 2), lipid A biosynthesis lauroyl/myristoyl acyltransferase, 2-acylglycerol O-acyltransferase (MGAT), dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-phosphate O-acyltransferase 1) and Tafazzin (the protein product of the Barth syndrome (TAZ) gene). Length = 187 Score = 49.3 bits (118), Expect = 1e-06 Identities = 40/173 (23%), Positives = 69/173 (39%), Gaps = 23/173 (13%) Query: 51 LLLKYITKTTVQIEGVDNIPST-GCIIAIKHQSSWDTFYFLTCIQDPIFILKHTVFY--- 106 LLL + ++++G P + H S WD L + + + V+ Sbjct: 4 LLLNFFGFVRLEVKGPPPPPGGGPVLFVSNHSSWWD-GLILFLLLERGL--RRDVYGLMD 60 Query: 107 ---IPIIGFYCFKQGMIGVKRNS---KNLDMKSIINRAKKAVMDNRQLIIYPEGTRRSPG 160 + F+ + G V R+S +K + K + I+PEGTR Sbjct: 61 EELLERYPFF-TRLGAFSVDRDSPRSAAKSLKYVARLLSKP---GSVVWIFPEGTRTRRD 116 Query: 161 DMPI-YKKGIAHIYESLSVPVIPIVVHAGLFWPRKKFMRYPGNFKVRVLKPIP 212 P+ +K G+AH+ E VP++P+ + F ++F VR+ PIP Sbjct: 117 KRPLQFKPGVAHLAEKAGVPIVPVALR-YTFELFEQF----PEIFVRIGPPIP 164 >gnl|CDD|153254 cd07992, LPLAT_AAK14816-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown AAK14816-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized glycerol-3-phosphate acyltransferases such as the Plasmodium falciparum locus AAK14816 putative acyltransferase, and similar proteins. Length = 203 Score = 48.8 bits (117), Expect = 2e-06 Identities = 42/178 (23%), Positives = 67/178 (37%), Gaps = 17/178 (9%) Query: 51 LLLKYITKT---TVQIEGVDNIPSTG-CIIAIKHQSSW-DTF-YFLTCIQDPIFILKHTV 104 LL + I + + + G +N+P G I H ++ D T + F+ K + Sbjct: 3 LLSRVILRIYFRRITVVGRENVPKDGPVIFLGNHPNALIDPLLLAATLRRPVRFLAKADL 62 Query: 105 FYIPIIGFYCFKQGMIGVKRNSKNLD-MKSIINRAK------KAVMDNRQLIIYPEGTRR 157 F P+IG+ G I V R I+ A +A+ + I+PEG Sbjct: 63 FKNPLIGWLLESFGAIPVYRPKDLARGGIGKISNAAVFDAVGEALKAGGAIGIFPEGGSH 122 Query: 158 SPGDMPIYKKGIAHI-YESLSVPVIPI-VVHAGLFWPRKKFMRYPGNFKVRVLKPIPA 213 + K G A + E+L + +V GL + K R+ V KPI Sbjct: 123 DRPRLLPLKAGAARMALEALEAGQKDVKIVPVGLNYEDKS--RFRSRVLVEFGKPISV 178 >gnl|CDD|153249 cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this suubgroup are such LPLATs as 2-acylglycerol O-acyltransferase (MGAT), and similar proteins. Length = 212 Score = 43.0 bits (102), Expect = 8e-05 Identities = 33/205 (16%), Positives = 66/205 (32%), Gaps = 27/205 (13%) Query: 62 QIEGVDNIPSTGCIIAIKHQS--SWDTFYFLTCIQD------PIFILKHTVFYIPIIGFY 113 ++ G++NIP G + + D P + H +F +P + Sbjct: 9 EVRGLENIPDEGPALLVHPHGGLPIDGALLAAAFLLLFPGRLPRALADHFLFPLPGLRDL 68 Query: 114 CFKQGMIGVKRNSKNLDMKSIINRAKKAVMDNRQLIIYPEGTR----RSPGDMPIY---K 166 + G + R + + + + ++I+P G R + + + Sbjct: 69 LRRLGAVPGSREN-----------CVRLLREGELVLIFPGGAREALKSKREEYYLLWKKR 117 Query: 167 KGIAHIYESLSVPVIP-IVVHAGLFWPRKKFMRYPGNFKVRVLKPIPAGIPRKIFFAELQ 225 KG A + P++P + P ++ L P+P +P F E Sbjct: 118 KGFARLALRAGAPIVPVFTFGEEELFRVLGDPDGPVGKRLFRLLPLPRRLPLYPVFGEPI 177 Query: 226 EKMEHASNNLLLETIRDNPQLYIPA 250 + E + + Q YI A Sbjct: 178 VVPRPPIPDPPDEDVEELHQKYIAA 202 >gnl|CDD|153253 cd07991, LPLAT_LPCAT1-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LPCAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lysophosphatidylcholine acyltransferase 1 (LPCAT-1), glycerol-3-phosphate acyltransferase 3 (GPAT3), and similar sequences. Length = 211 Score = 40.7 bits (96), Expect = 4e-04 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 4/97 (4%) Query: 61 VQIEGVDNIPSTGCIIAIKHQSSWDTFYFLTCIQDPIFILKHTVFYIPIIGFYCFKQGMI 120 +++ G + P II H S D + + P + K + +P IG G I Sbjct: 13 IKVHGKPDPPEAPRIIVANHTSFIDPLILFSDLF-PSIVAKKELGKLPFIGTILRALGCI 71 Query: 121 GVKRNSKNLDMKSIINRAKKAV--MDNRQLIIYPEGT 155 V R+ D K ++ K+ + ++I+PEGT Sbjct: 72 FVDRSEPK-DRKKVVEEIKERATDPNWPPILIFPEGT 107 >gnl|CDD|48045 cd03450, NodN, NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.. Length = 149 Score = 30.1 bits (68), Expect = 0.60 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 7/80 (8%) Query: 135 INRAKKAVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPVIPIVVHAGLFWPRK 194 I++ A D++ + + PE P + IAH + +LS+ +P + Sbjct: 29 IDQFADATGDHQWIHVDPERAAAEP-----FGGTIAHGFLTLSL--LPALTPQLFRVEGV 81 Query: 195 KFMRYPGNFKVRVLKPIPAG 214 K G KVR P+P G Sbjct: 82 KMGVNYGLDKVRFPAPVPVG 101 >gnl|CDD|33207 COG3400, COG3400, Uncharacterized protein conserved in bacteria [Function unknown]. Length = 471 Score = 27.7 bits (61), Expect = 3.2 Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 22/144 (15%) Query: 110 IGFYCFKQGMIGVKRNSKNLDMKSIINRAKKAVMDNRQLIIYPEGTRRSPGDMPIYKKGI 169 G + +I + S N DM S+I K MD L+ + ++ ++ + + + Sbjct: 344 SGLSKTFESIIVLNELSINEDMSSVIFDVSK-QMDLGLLLYDFDPNKQYKNEIVNHYRNL 402 Query: 170 AHIY----ESLSVPVIPIVVHAGLFWPRKKFMRYPGNFKVRVLKPIPAGIPRKIFFAELQ 225 A + E + + +++ L P FM + R K + K+ F Sbjct: 403 AKFFDRKIEIFNTDIENPLMYLNLRNPILHFMPFEECLTARRFKWFLSTKLEKLAFLN-- 460 Query: 226 EKMEHASNNLLLETIRDNPQLYIP 249 DNPQ++IP Sbjct: 461 ---------------DDNPQIFIP 469 >gnl|CDD|30529 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 314 Score = 27.9 bits (62), Expect = 3.4 Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 17/106 (16%) Query: 130 DMKSIINRAKKAVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPVIPIVVHAGL 189 D K+I + KKA D LI Y +G + P ++ IY + + + A Sbjct: 213 DPKTIRKKIKKAATDGPTLIEYRKGGK--PEVCNLF-----EIYSAFFEDDSILEIEAEY 265 Query: 190 FWPRKKFMRYPGNFKVRVLKPIPAGIPRKIFFAELQEKMEHASNNL 235 R + G K + + I + F +QE+ E + Sbjct: 266 ---RGGELGC-GECKKELAEAI------QEFLKPIQERREELREDP 301 >gnl|CDD|73373 cd02811, IDI-2_FMN, Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.. Length = 326 Score = 27.4 bits (61), Expect = 3.8 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%) Query: 147 QLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPVI 181 Q + PEG R G + + I + ++LSVPVI Sbjct: 152 QEAVQPEGDRDFRG----WLERIEELVKALSVPVI 182 >gnl|CDD|28959 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains.. Length = 352 Score = 27.5 bits (61), Expect = 4.6 Identities = 14/51 (27%), Positives = 23/51 (45%) Query: 211 IPAGIPRKIFFAELQEKMEHASNNLLLETIRDNPQLYIPASTKKALQHLRQ 261 I AG + FF + +++ + S L T D+ LY S+ HL+ Sbjct: 40 IDAGGVTREFFTLVSKELFNPSYGLFRYTPDDSGLLYPNPSSFADEDHLKL 90 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.330 0.144 0.446 Gapped Lambda K H 0.267 0.0845 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 3,438,929 Number of extensions: 192667 Number of successful extensions: 946 Number of sequences better than 10.0: 1 Number of HSP's gapped: 909 Number of HSP's successfully gapped: 67 Length of query: 266 Length of database: 6,263,737 Length adjustment: 92 Effective length of query: 174 Effective length of database: 4,275,709 Effective search space: 743973366 Effective search space used: 743973366 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 56 (25.1 bits)