RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|255764499|ref|YP_003064993.2| 1-acyl-sn-glycerol-3-phosphate
acyltransferase [Candidatus Liberibacter asiaticus str. psy62]
         (266 letters)



>gnl|CDD|153251 cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases
           (LPLATs) of Glycerophospholipid Biosynthesis:
           AGPAT-like.  Lysophospholipid acyltransferase (LPLAT)
           superfamily member: acyltransferases of de novo and
           remodeling pathways of glycerophospholipid biosynthesis
           which catalyze the incorporation of an acyl group from
           either acylCoAs or acyl-acyl carrier proteins (acylACPs)
           into acceptors such as glycerol 3-phosphate,
           dihydroxyacetone phosphate or lyso-phosphatidic acid.
           Included in this subgroup are such LPLATs as
           1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
           PlsC), Tafazzin (product of Barth syndrome gene), and
           similar proteins.
          Length = 184

 Score =  126 bits (318), Expect = 7e-30
 Identities = 50/174 (28%), Positives = 87/174 (50%), Gaps = 6/174 (3%)

Query: 61  VQIEGVDNIPSTG-CIIAIKHQSSWDTFYFLTCIQDPI-FILKHTVFYIPIIGFYCFKQG 118
           V++EG++N+P  G  II   HQS  D       +  PI F+ K  +F IP +G+     G
Sbjct: 12  VRVEGLENLPPKGPVIIVANHQSYLDPLVLGAALPRPIRFVAKKELFKIPFLGWLLRLLG 71

Query: 119 MIGVKRNSKNLDMKSIINRAKKAVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSV 178
            I + R +     +++   A +A+ +   ++I+PEGTR   G++  +K G   + +   V
Sbjct: 72  AIPIDRGNGRSAREAL-REAIEALKEGESVVIFPEGTRSRDGELLPFKSGAFRLAKEAGV 130

Query: 179 PVIPIVVH-AGLFWPRKKFMRYPGNFKVRVLKPIPA--GIPRKIFFAELQEKME 229
           P++P+ +       P+ K +  PG   VR+ +PIP       +    EL+EK+ 
Sbjct: 131 PIVPVAISGTWGSLPKGKKLPRPGRVTVRIGEPIPPEGLELAEEDRKELREKVR 184


>gnl|CDD|30553 COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase
           [Lipid metabolism].
          Length = 255

 Score =  115 bits (287), Expect = 2e-26
 Identities = 54/238 (22%), Positives = 100/238 (42%), Gaps = 10/238 (4%)

Query: 10  IFNIFFFIHIFIVSMIVLLLCCFITRKQCLYIAKKWAHVNQLLLKYITKTTVQIEGVDNI 69
           +      I + +  ++ L L      +    + ++W     LLL  +    V++EG++N+
Sbjct: 1   LRLALLLILVILFLLLPLPLALIALFRLRRPVLRRWLRFLVLLLLLLFGLRVEVEGLENL 60

Query: 70  PSTG-CIIAIKHQSSWDTFYFLTCIQDPI---FILKHTVFYIPIIGFYCFKQGMIGVKRN 125
           P  G  ++   HQS  D       +       F+ K  +F +P++G+     G I V R 
Sbjct: 61  PKGGPALVVANHQSFLDPLLLSLALPRRGPVRFVAKKELFKVPLLGWLLRLLGAIPVDRE 120

Query: 126 SKNLDMKSIINRAKKAVMDNRQLIIYPEGTRRSPGD-MPIYKKGIAHIYESLSVPVIPIV 184
           + + +   +     +     R L+I+PEGTR   G+ +  +K+G A +     VP++P+ 
Sbjct: 121 NPDDET--LRAAVARLKAGGRSLVIFPEGTRSRGGEELLPFKRGAARLALEAGVPIVPVA 178

Query: 185 VHAGLFWPRKKFMRYPGNFKVRVLKPIPAGIPRKIFFAELQEKMEHASNNLLLETIRD 242
           +               G  KVR+  PI      +    EL E +E  +  +LLE +  
Sbjct: 179 IVGAEELF---PSLKKGKVKVRIGPPIDISALPEPLLPELAEAVEQLARPILLELLPR 233


>gnl|CDD|38059 KOG2848, KOG2848, KOG2848, 1-acyl-sn-glycerol-3-phosphate
           acyltransferase [Lipid transport and metabolism].
          Length = 276

 Score =  104 bits (260), Expect = 3e-23
 Identities = 63/249 (25%), Positives = 113/249 (45%), Gaps = 9/249 (3%)

Query: 5   FIRSLIFNIFFFIHIFIVSMIVLLLCCFITRKQCLYIAKKWAHVNQLLLKYITKTTVQIE 64
           + R   +      +  I S + LL        +  +IAK W H     +KY+     ++ 
Sbjct: 27  YFRCAFYGAICSFYGVIASPVCLL--RGGRSVENHFIAKLWFHS----MKYLLGLRFEVR 80

Query: 65  GVDNIPSTG-CIIAIKHQSSWDTFYFLTCI-QDPIFILKHTVFYIPIIGFYCFKQGMIGV 122
           G +N+P +   +I   HQSS D     +   ++ + I K ++FY+PI G   +  G++ +
Sbjct: 81  GEENLPKSKPAVIVSNHQSSLDILGMGSIWPKNCVVIAKRSLFYVPIFGLAMYLSGVVFI 140

Query: 123 KRNSKNLDMKSIINRAKKAVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPVIP 182
            R+ +   + ++   A++   +NR++ ++PEGTR   G +  +KKG  H+     VP++P
Sbjct: 141 DRSRREKAIDTLDKCAERMKKENRKVWVFPEGTRNKEGRLLPFKKGAFHLAVQAQVPIVP 200

Query: 183 IVVHA-GLFWPRKKFMRYPGNFKVRVLKPIPAGIPRKIFFAELQEKMEHASNNLLLETIR 241
           +V  + G F+  K+ +   GN  VRVL PIP     K     L ++   A      E   
Sbjct: 201 VVFSSYGDFYSTKEKVFNSGNVIVRVLPPIPTEGLTKDDVDVLSDECRSAMLETFKEISA 260

Query: 242 DNPQLYIPA 250
           +        
Sbjct: 261 EAAVRNATL 269


>gnl|CDD|110550 pfam01553, Acyltransferase, Acyltransferase.  This family contains
           acyltransferases involved in phospholipid biosynthesis
           and other proteins of unknown function. This family also
           includes tafazzin, the Barth syndrome gene.
          Length = 132

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 34/132 (25%), Positives = 66/132 (50%), Gaps = 9/132 (6%)

Query: 61  VQIEGVDNIPS-TGCIIAIKHQSSWDTFYFLTCI-----QDPIFILKHTVFYIPIIGFYC 114
           V++ G++N+P     I+   HQS  D    L+ +     + P+F+ K  +F +P++G+  
Sbjct: 2   VEVHGLENLPRKGPAIVVANHQSWLD-PLVLSLLLYKRPRRPVFVAKDELFTVPLLGWLM 60

Query: 115 FKQGMIGVKRNSKNLDMKSIINRAKKAVMDNRQLI-IYPEGTRRSPGDMPIYKKGIAHIY 173
              G I + R        S +    + ++   +L+ I+PEGTR   G++  +KKG   + 
Sbjct: 61  RLLGHIFIDRKKAKDARAS-LRELVELLLRAGKLVVIFPEGTRSRNGELLPFKKGAFRLA 119

Query: 174 ESLSVPVIPIVV 185
               VP++P+ +
Sbjct: 120 REAGVPIVPVAI 131


>gnl|CDD|36718 KOG1505, KOG1505, KOG1505, Lysophosphatidic acid acyltransferase
           LPAAT and related acyltransferases [Lipid transport and
           metabolism].
          Length = 346

 Score = 57.6 bits (139), Expect = 3e-09
 Identities = 38/167 (22%), Positives = 67/167 (40%), Gaps = 12/167 (7%)

Query: 3   MIFIRSLIFNIFFFIHIFIVSMIVLLLCCFITRKQC--LYIAKKWAHVNQLLLKYITKTT 60
           +  +  L+      +   +VS IVL L   +  +    LY        +      +    
Sbjct: 1   LFLLSGLVIAFIQLVVFVLVSAIVLQLFSKLLWRLLYKLYSGLLLFLASWYAGSEVNGYG 60

Query: 61  VQIEGVDNIPSTGCIIAIKHQSSWDTFYFLTCIQDP------IFILKHTVFYIPIIGFYC 114
             + G         +IA  HQS  D  Y  T  Q          +LK ++ Y+PI G+  
Sbjct: 61  DDVTGDKYGKERALLIA-NHQSEVDWLYLWTYAQRKGVLGNVKIVLKKSLKYLPIFGWGM 119

Query: 115 FKQGMIGVKRNSKNLD--MKSIINRAKKAVMDNRQLIIYPEGTRRSP 159
           +  G I ++RN +  +  + S++   K +  D   L+++PEGTR + 
Sbjct: 120 WFHGFIFLERNWEKDEKTLISLLKHLKDSP-DPYWLLLFPEGTRFTE 165


>gnl|CDD|153250 cd07988, LPLAT_ABO13168-like, Lysophospholipid Acyltransferases
           (LPLATs) of Glycerophospholipid Biosynthesis: Unknown
           ABO13168.  Lysophospholipid acyltransferase (LPLAT)
           superfamily member: acyltransferases of de novo and
           remodeling pathways of glycerophospholipid biosynthesis
           which catalyze the incorporation of an acyl group from
           either acylCoAs or acyl-acyl carrier proteins (acylACPs)
           into acceptors such as glycerol 3-phosphate,
           dihydroxyacetone phosphate or lyso-phosphatidic acid.
           Included in this subgroup are uncharacterized
           phospholipid/glycerol acyltransferases such as the
           Acinetobacter baumannii ATCC 17978 locus ABO13168
           putative acyltransferase, and similar proteins.
          Length = 163

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 20/127 (15%)

Query: 75  IIAIKHQSSWDTFYFLTCI----QDPIFILKHTVFYIPIIGFYCFKQGMIGVKRNSKN-- 128
           +I   H S+WD    L           F+ KH++F  P +G +    G I V R+     
Sbjct: 24  VIGAPHTSNWDFVLGLLAAFALGLKISFLGKHSLFKPP-LGPFMRWLGGIPVDRSRAGGL 82

Query: 129 LD-MKSIINRAKKAVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPVIPIVVHA 187
           ++ +     R ++ V     L I PEGTR         K G  HI     VP++ + +  
Sbjct: 83  VEQVVEEFRRREEFV-----LAIAPEGTRSKVDKW---KTGFYHIARGAGVPILLVYLD- 133

Query: 188 GLFWPRK 194
              + RK
Sbjct: 134 ---YKRK 137


>gnl|CDD|153252 cd07990, LPLAT_LCLAT1-like, Lysophospholipid Acyltransferases
           (LPLATs) of Glycerophospholipid Biosynthesis:
           LCLAT1-like.  Lysophospholipid acyltransferase (LPLAT)
           superfamily member: acyltransferases of de novo and
           remodeling pathways of glycerophospholipid biosynthesis
           which catalyze the incorporation of an acyl group from
           either acylCoAs or acyl-acyl carrier proteins (acylACPs)
           into acceptors such as glycerol 3-phosphate,
           dihydroxyacetone phosphate or lyso-phosphatidic acid.
           Included in this subgroup are such LPLATs as
           Lysocardiolipin acyltransferase 1 (LCLAT1) or
           1-acyl-sn-glycerol-3-phosphate acyltransferase and
           similar proteins.
          Length = 193

 Score = 50.7 bits (122), Expect = 4e-07
 Identities = 34/154 (22%), Positives = 57/154 (37%), Gaps = 29/154 (18%)

Query: 51  LLLKYITKTTVQIEGVDNIPSTG-CIIAIKHQSSWDTFYFLTCIQDPI------FILKHT 103
            L ++++   V + G +        +I   H+S  D                   +LK +
Sbjct: 2   FLFEWLSGVKVVVYGDEPKLPKERALIISNHRSEVDWLVLWMLADRFGRLGRLKIVLKDS 61

Query: 104 VFYIPIIGFYCFKQGMIGVKRNSKNLDMKSIINRAK--KAVMDNRQLIIYPEGTRRSP-- 159
           + Y P+ G+       I +KR  +  D K+I  + K  K   +   L+I+PEGTR +   
Sbjct: 62  LKYPPLGGWGWQLGEFIFLKRKWEK-DEKTIKRQLKRLKDSPEPFWLLIFPEGTRFTEEK 120

Query: 160 ----------GDMPIYK-------KGIAHIYESL 176
                       +P  K       KG   I E+L
Sbjct: 121 KERSQEFAEKNGLPPLKHVLLPRTKGFVAILETL 154


>gnl|CDD|153244 cd06551, LPLAT, Lysophospholipid acyltransferases (LPLATs) of
           glycerophospholipid biosynthesis.  Lysophospholipid
           acyltransferase (LPLAT) superfamily members are
           acyltransferases of de novo and remodeling pathways of
           glycerophospholipid biosynthesis. These proteins
           catalyze the incorporation of an acyl group from either
           acylCoAs or acyl-acyl carrier proteins (acylACPs) into
           acceptors such as glycerol 3-phosphate, dihydroxyacetone
           phosphate or lyso-phosphatidic acid. Included in this
           superfamily are LPLATs such as glycerol-3-phosphate
           1-acyltransferase (GPAT, PlsB),
           1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
           PlsC), lysophosphatidylcholine acyltransferase 1
           (LPCAT-1), lysophosphatidylethanolamine acyltransferase
           (LPEAT, also known as, MBOAT2, membrane-bound
           O-acyltransferase domain-containing protein 2), lipid A
           biosynthesis lauroyl/myristoyl acyltransferase,
           2-acylglycerol O-acyltransferase (MGAT),
           dihydroxyacetone phosphate acyltransferase (DHAPAT, also
           known as 1 glycerol-3-phosphate O-acyltransferase 1) and
           Tafazzin (the protein product of the Barth syndrome
           (TAZ) gene).
          Length = 187

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 40/173 (23%), Positives = 69/173 (39%), Gaps = 23/173 (13%)

Query: 51  LLLKYITKTTVQIEGVDNIPST-GCIIAIKHQSSWDTFYFLTCIQDPIFILKHTVFY--- 106
           LLL +     ++++G    P     +    H S WD    L  + +     +  V+    
Sbjct: 4   LLLNFFGFVRLEVKGPPPPPGGGPVLFVSNHSSWWD-GLILFLLLERGL--RRDVYGLMD 60

Query: 107 ---IPIIGFYCFKQGMIGVKRNS---KNLDMKSIINRAKKAVMDNRQLIIYPEGTRRSPG 160
              +    F+  + G   V R+S       +K +     K       + I+PEGTR    
Sbjct: 61  EELLERYPFF-TRLGAFSVDRDSPRSAAKSLKYVARLLSKP---GSVVWIFPEGTRTRRD 116

Query: 161 DMPI-YKKGIAHIYESLSVPVIPIVVHAGLFWPRKKFMRYPGNFKVRVLKPIP 212
             P+ +K G+AH+ E   VP++P+ +    F   ++F        VR+  PIP
Sbjct: 117 KRPLQFKPGVAHLAEKAGVPIVPVALR-YTFELFEQF----PEIFVRIGPPIP 164


>gnl|CDD|153254 cd07992, LPLAT_AAK14816-like, Lysophospholipid Acyltransferases
           (LPLATs) of Glycerophospholipid Biosynthesis: Unknown
           AAK14816-like.  Lysophospholipid acyltransferase (LPLAT)
           superfamily member: acyltransferases of de novo and
           remodeling pathways of glycerophospholipid biosynthesis
           which catalyze the incorporation of an acyl group from
           either acylCoAs or acyl-acyl carrier proteins (acylACPs)
           into acceptors such as glycerol 3-phosphate,
           dihydroxyacetone phosphate or lyso-phosphatidic acid.
           Included in this subgroup are uncharacterized
           glycerol-3-phosphate acyltransferases such as the
           Plasmodium falciparum locus AAK14816 putative
           acyltransferase, and similar proteins.
          Length = 203

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 42/178 (23%), Positives = 67/178 (37%), Gaps = 17/178 (9%)

Query: 51  LLLKYITKT---TVQIEGVDNIPSTG-CIIAIKHQSSW-DTF-YFLTCIQDPIFILKHTV 104
           LL + I +     + + G +N+P  G  I    H ++  D      T  +   F+ K  +
Sbjct: 3   LLSRVILRIYFRRITVVGRENVPKDGPVIFLGNHPNALIDPLLLAATLRRPVRFLAKADL 62

Query: 105 FYIPIIGFYCFKQGMIGVKRNSKNLD-MKSIINRAK------KAVMDNRQLIIYPEGTRR 157
           F  P+IG+     G I V R           I+ A       +A+     + I+PEG   
Sbjct: 63  FKNPLIGWLLESFGAIPVYRPKDLARGGIGKISNAAVFDAVGEALKAGGAIGIFPEGGSH 122

Query: 158 SPGDMPIYKKGIAHI-YESLSVPVIPI-VVHAGLFWPRKKFMRYPGNFKVRVLKPIPA 213
               +   K G A +  E+L      + +V  GL +  K   R+     V   KPI  
Sbjct: 123 DRPRLLPLKAGAARMALEALEAGQKDVKIVPVGLNYEDKS--RFRSRVLVEFGKPISV 178


>gnl|CDD|153249 cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases
           (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like.
            Lysophospholipid acyltransferase (LPLAT) superfamily
           member: acyltransferases of de novo and remodeling
           pathways of glycerophospholipid biosynthesis which
           catalyze the incorporation of an acyl group from either
           acylCoAs or acyl-acyl carrier proteins (acylACPs) into
           acceptors such as glycerol 3-phosphate, dihydroxyacetone
           phosphate or lyso-phosphatidic acid. Included in this
           suubgroup are such LPLATs as 2-acylglycerol
           O-acyltransferase (MGAT), and similar proteins.
          Length = 212

 Score = 43.0 bits (102), Expect = 8e-05
 Identities = 33/205 (16%), Positives = 66/205 (32%), Gaps = 27/205 (13%)

Query: 62  QIEGVDNIPSTGCIIAIKHQS--SWDTFYFLTCIQD------PIFILKHTVFYIPIIGFY 113
           ++ G++NIP  G  + +        D                P  +  H +F +P +   
Sbjct: 9   EVRGLENIPDEGPALLVHPHGGLPIDGALLAAAFLLLFPGRLPRALADHFLFPLPGLRDL 68

Query: 114 CFKQGMIGVKRNSKNLDMKSIINRAKKAVMDNRQLIIYPEGTR----RSPGDMPIY---K 166
             + G +   R +             + + +   ++I+P G R        +  +    +
Sbjct: 69  LRRLGAVPGSREN-----------CVRLLREGELVLIFPGGAREALKSKREEYYLLWKKR 117

Query: 167 KGIAHIYESLSVPVIP-IVVHAGLFWPRKKFMRYPGNFKVRVLKPIPAGIPRKIFFAELQ 225
           KG A +      P++P         +        P   ++  L P+P  +P    F E  
Sbjct: 118 KGFARLALRAGAPIVPVFTFGEEELFRVLGDPDGPVGKRLFRLLPLPRRLPLYPVFGEPI 177

Query: 226 EKMEHASNNLLLETIRDNPQLYIPA 250
                   +   E + +  Q YI A
Sbjct: 178 VVPRPPIPDPPDEDVEELHQKYIAA 202


>gnl|CDD|153253 cd07991, LPLAT_LPCAT1-like, Lysophospholipid Acyltransferases
           (LPLATs) of Glycerophospholipid Biosynthesis:
           LPCAT1-like.  Lysophospholipid acyltransferase (LPLAT)
           superfamily member: acyltransferases of de novo and
           remodeling pathways of glycerophospholipid biosynthesis
           which catalyze the incorporation of an acyl group from
           either acylCoAs or acyl-acyl carrier proteins (acylACPs)
           into acceptors such as glycerol 3-phosphate,
           dihydroxyacetone phosphate or lyso-phosphatidic acid.
           Included in this subgroup are such LPLATs as
           lysophosphatidylcholine acyltransferase 1 (LPCAT-1),
           glycerol-3-phosphate acyltransferase 3 (GPAT3), and
           similar sequences.
          Length = 211

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 4/97 (4%)

Query: 61  VQIEGVDNIPSTGCIIAIKHQSSWDTFYFLTCIQDPIFILKHTVFYIPIIGFYCFKQGMI 120
           +++ G  + P    II   H S  D     + +  P  + K  +  +P IG      G I
Sbjct: 13  IKVHGKPDPPEAPRIIVANHTSFIDPLILFSDLF-PSIVAKKELGKLPFIGTILRALGCI 71

Query: 121 GVKRNSKNLDMKSIINRAKKAV--MDNRQLIIYPEGT 155
            V R+    D K ++   K+     +   ++I+PEGT
Sbjct: 72  FVDRSEPK-DRKKVVEEIKERATDPNWPPILIFPEGT 107


>gnl|CDD|48045 cd03450, NodN, NodN (nodulation factor N) contains a single hot dog
           fold similar to those of the peroxisomal
           Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the
           fatty acid synthase beta subunit.  Rhizobium and related
           species form nodules on the roots of their legume hosts,
           a symbiotic process that requires production of Nod
           factors, which are signal molecules involved in root
           hair deformation and meristematic cell division.  The
           nodulation gene products, including NodN, are involved
           in producing the Nod factors, however the role played by
           NodN is unclear..
          Length = 149

 Score = 30.1 bits (68), Expect = 0.60
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 135 INRAKKAVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPVIPIVVHAGLFWPRK 194
           I++   A  D++ + + PE     P     +   IAH + +LS+  +P +          
Sbjct: 29  IDQFADATGDHQWIHVDPERAAAEP-----FGGTIAHGFLTLSL--LPALTPQLFRVEGV 81

Query: 195 KFMRYPGNFKVRVLKPIPAG 214
           K     G  KVR   P+P G
Sbjct: 82  KMGVNYGLDKVRFPAPVPVG 101


>gnl|CDD|33207 COG3400, COG3400, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 471

 Score = 27.7 bits (61), Expect = 3.2
 Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 22/144 (15%)

Query: 110 IGFYCFKQGMIGVKRNSKNLDMKSIINRAKKAVMDNRQLIIYPEGTRRSPGDMPIYKKGI 169
            G     + +I +   S N DM S+I    K  MD   L+   +  ++   ++  + + +
Sbjct: 344 SGLSKTFESIIVLNELSINEDMSSVIFDVSK-QMDLGLLLYDFDPNKQYKNEIVNHYRNL 402

Query: 170 AHIY----ESLSVPVIPIVVHAGLFWPRKKFMRYPGNFKVRVLKPIPAGIPRKIFFAELQ 225
           A  +    E  +  +   +++  L  P   FM +      R  K   +    K+ F    
Sbjct: 403 AKFFDRKIEIFNTDIENPLMYLNLRNPILHFMPFEECLTARRFKWFLSTKLEKLAFLN-- 460

Query: 226 EKMEHASNNLLLETIRDNPQLYIP 249
                           DNPQ++IP
Sbjct: 461 ---------------DDNPQIFIP 469


>gnl|CDD|30529 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Translation, ribosomal
           structure and biogenesis].
          Length = 314

 Score = 27.9 bits (62), Expect = 3.4
 Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 17/106 (16%)

Query: 130 DMKSIINRAKKAVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPVIPIVVHAGL 189
           D K+I  + KKA  D   LI Y +G +  P    ++      IY +       + + A  
Sbjct: 213 DPKTIRKKIKKAATDGPTLIEYRKGGK--PEVCNLF-----EIYSAFFEDDSILEIEAEY 265

Query: 190 FWPRKKFMRYPGNFKVRVLKPIPAGIPRKIFFAELQEKMEHASNNL 235
              R   +   G  K  + + I      + F   +QE+ E    + 
Sbjct: 266 ---RGGELGC-GECKKELAEAI------QEFLKPIQERREELREDP 301


>gnl|CDD|73373 cd02811, IDI-2_FMN, Isopentenyl-diphosphate:dimethylallyl
           diphosphate isomerase type 2 (IDI-2) FMN-binding domain.
           Two types of IDIs have been characterized at present.
           The long known IDI-1 is only dependent on divalent
           metals for activity, whereas IDI-2 requires a metal, FMN
           and NADPH. IDI-2 catalyzes the interconversion of
           isopentenyl diphosphate (IPP) and dimethylallyl
           diphosphate (DMAPP) in the mevalonate pathway..
          Length = 326

 Score = 27.4 bits (61), Expect = 3.8
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)

Query: 147 QLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPVI 181
           Q  + PEG R   G    + + I  + ++LSVPVI
Sbjct: 152 QEAVQPEGDRDFRG----WLERIEELVKALSVPVI 182


>gnl|CDD|28959 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a
           subclass of Ubiquitin-protein ligase (E3). It binds
           specific ubiquitin-conjugating enzymes (E2), accepts
           ubiquitin from E2, transfers ubiquitin to substrate
           lysine side chains, and transfers additional ubiquitin
           molecules to the end of growing ubiquitin chains..
          Length = 352

 Score = 27.5 bits (61), Expect = 4.6
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 211 IPAGIPRKIFFAELQEKMEHASNNLLLETIRDNPQLYIPASTKKALQHLRQ 261
           I AG   + FF  + +++ + S  L   T  D+  LY   S+     HL+ 
Sbjct: 40  IDAGGVTREFFTLVSKELFNPSYGLFRYTPDDSGLLYPNPSSFADEDHLKL 90


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.330    0.144    0.446 

Gapped
Lambda     K      H
   0.267   0.0845    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,438,929
Number of extensions: 192667
Number of successful extensions: 946
Number of sequences better than 10.0: 1
Number of HSP's gapped: 909
Number of HSP's successfully gapped: 67
Length of query: 266
Length of database: 6,263,737
Length adjustment: 92
Effective length of query: 174
Effective length of database: 4,275,709
Effective search space: 743973366
Effective search space used: 743973366
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (25.1 bits)