RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|255764499|ref|YP_003064993.2| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Candidatus Liberibacter asiaticus str. psy62] (266 letters) >1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} (A:80-367) Length = 288 Score = 83.2 bits (204), Expect = 3e-17 Identities = 24/286 (8%), Positives = 63/286 (22%), Gaps = 58/286 (20%) Query: 13 IFFFIHIFIVSMIVLLLCCFITRKQCLYIAKKWAHVNQLLLKYITKTTVQIEGVDNIPST 72 +F H I ++ + ++ ++ + + + Sbjct: 1 VFSSHHKAI----------REPFDYYIFGQNYIRPLIDFGNSFVGNLSLFKDIEEKLQQG 50 Query: 73 G-CIIAIKHQSSWDTFYFLTCI--------QDPIFILKHTVFYIPIIGFYCFKQGMIGVK 123 ++ HQ+ D + ++ IF+ V P+ + + +I V Sbjct: 51 HNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICVY 110 Query: 124 RNS------------KNLDMKSIINRAKKAVMDNRQLIIYPEGTRRSPGDM--------- 162 + + +S+ A ++ + I P G R P Sbjct: 111 SKKHXFDIPELTETKRKANTRSLKEXALLLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPF 170 Query: 163 -PIYKKGIAHIYESLSVPVIPIVVHA-----------GLFWPRKKFMRYPGNFKVRVLKP 210 + + VP + +K + + V Sbjct: 171 DASSVDNXRRLIQHSDVPGHLFPLALLCHDIXPPPSQVEIEIGEKRVIAFNGAGLSVAPE 230 Query: 211 IP------AGIPRKIFFAELQEKMEHASNNLLLETIRDNPQLYIPA 250 I + + + + Sbjct: 231 ISFEEIAATHKNPEEVREAYSKALFDSVAXQYNVLKTAISGKQGLG 276 >1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} (A:388-506) Length = 119 Score = 30.6 bits (69), Expect = 0.23 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 7/44 (15%) Query: 222 AELQEKMEHASNNLLLETIRDNPQLYIPASTKKALQHLRQIQNN 265 AEL +++AS+ LE QL +AL + RQ+ N+ Sbjct: 59 AELYAAVQYASDPDHLEACFSEEQL-------RALNNYRQMLND 95 >2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Length = 116 Score = 28.7 bits (64), Expect = 0.80 Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%) Query: 165 YKKGIAHIYESLSVPVIPIVVHAGLFWPRKKFMR 198 YK+GI H+ +S+ H G W + M+ Sbjct: 45 YKQGIGHLLRGISISS-KESEHTGPGWESARQMQ 77 >1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A {Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A* 1y8z_A* (A:178-386) Length = 209 Score = 25.8 bits (56), Expect = 6.4 Identities = 10/24 (41%), Positives = 13/24 (54%) Query: 153 EGTRRSPGDMPIYKKGIAHIYESL 176 EG RSP + I +KGI + Y Sbjct: 56 EGLERSPAFIAIKEKGIPYEYYGN 79 >3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens} (A:) Length = 89 Score = 25.5 bits (56), Expect = 7.6 Identities = 7/16 (43%), Positives = 11/16 (68%) Query: 165 YKKGIAHIYESLSVPV 180 YKKGI + + ++V V Sbjct: 42 YKKGIEELEKGIAVIV 57 >2wmi_A Fucolectin-related protein; glycoside hydrolase, hydrolase, fucose utilization, blood group antigen; HET: A2G GAL FUC; 1.90A {Streptococcus pneumoniae} PDB: 2wmj_A* 2wmk_A* 2wmi_B* (A:1-423) Length = 423 Score = 25.6 bits (56), Expect = 8.0 Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 16/60 (26%) Query: 137 RAKKAVMDNRQLIIYPEGTRRSPG-----------DMPIYKKGIAHIYESLSVPVIPIVV 185 +K+ V+++ ++ I+ + + + G P+Y G ++ +P IP V+ Sbjct: 346 PSKEKVLEDTKVFIHGDYSNKGNGKFFVNVNTDREQTPLYMTGRYNV-----IPAIPGVL 400 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.330 0.144 0.446 Gapped Lambda K H 0.267 0.0499 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,056,448 Number of extensions: 92541 Number of successful extensions: 237 Number of sequences better than 10.0: 1 Number of HSP's gapped: 234 Number of HSP's successfully gapped: 12 Length of query: 266 Length of database: 4,956,049 Length adjustment: 87 Effective length of query: 179 Effective length of database: 2,015,014 Effective search space: 360687506 Effective search space used: 360687506 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 54 (25.1 bits)