RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|255764499|ref|YP_003064993.2| 1-acyl-sn-glycerol-3-phosphate
acyltransferase [Candidatus Liberibacter asiaticus str. psy62]
         (266 letters)



>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted
           alpha/beta, four helix bundle; 1.55A {Cucurbita
           moschata} (A:80-367)
          Length = 288

 Score = 83.2 bits (204), Expect = 3e-17
 Identities = 24/286 (8%), Positives = 63/286 (22%), Gaps = 58/286 (20%)

Query: 13  IFFFIHIFIVSMIVLLLCCFITRKQCLYIAKKWAHVNQLLLKYITKTTVQIEGVDNIPST 72
           +F   H  I                 ++       +      ++   ++  +  + +   
Sbjct: 1   VFSSHHKAI----------REPFDYYIFGQNYIRPLIDFGNSFVGNLSLFKDIEEKLQQG 50

Query: 73  G-CIIAIKHQSSWDTFYFLTCI--------QDPIFILKHTVFYIPIIGFYCFKQGMIGVK 123
              ++   HQ+  D       +        ++ IF+    V   P+   +   + +I V 
Sbjct: 51  HNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICVY 110

Query: 124 RNS------------KNLDMKSIINRAKKAVMDNRQLIIYPEGTRRSPGDM--------- 162
                          +  + +S+   A      ++ + I P G R  P            
Sbjct: 111 SKKHXFDIPELTETKRKANTRSLKEXALLLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPF 170

Query: 163 -PIYKKGIAHIYESLSVPVIPIVVHA-----------GLFWPRKKFMRYPGNFKVRVLKP 210
                     + +   VP     +                   +K +       + V   
Sbjct: 171 DASSVDNXRRLIQHSDVPGHLFPLALLCHDIXPPPSQVEIEIGEKRVIAFNGAGLSVAPE 230

Query: 211 IP------AGIPRKIFFAELQEKMEHASNNLLLETIRDNPQLYIPA 250
           I            +       + +  +                   
Sbjct: 231 ISFEEIAATHKNPEEVREAYSKALFDSVAXQYNVLKTAISGKQGLG 276


>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor
           suppressor, breast cancer susceptibility, DNA-binding;
           3.10A {Mus musculus} (A:388-506)
          Length = 119

 Score = 30.6 bits (69), Expect = 0.23
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 7/44 (15%)

Query: 222 AELQEKMEHASNNLLLETIRDNPQLYIPASTKKALQHLRQIQNN 265
           AEL   +++AS+   LE      QL       +AL + RQ+ N+
Sbjct: 59  AELYAAVQYASDPDHLEACFSEEQL-------RALNNYRQMLND 95


>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national
           project on protein structural and functional analyses;
           NMR {Homo sapiens} (A:)
          Length = 116

 Score = 28.7 bits (64), Expect = 0.80
 Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 165 YKKGIAHIYESLSVPVIPIVVHAGLFWPRKKFMR 198
           YK+GI H+   +S+       H G  W   + M+
Sbjct: 45  YKQGIGHLLRGISISS-KESEHTGPGWESARQMQ 77


>1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A
           {Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A*
           1y8z_A* (A:178-386)
          Length = 209

 Score = 25.8 bits (56), Expect = 6.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 153 EGTRRSPGDMPIYKKGIAHIYESL 176
           EG  RSP  + I +KGI + Y   
Sbjct: 56  EGLERSPAFIAIKEKGIPYEYYGN 79


>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP-
           binding, cytoplasm, disease mutation, hereditary spastic
           paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
           (A:)
          Length = 89

 Score = 25.5 bits (56), Expect = 7.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 165 YKKGIAHIYESLSVPV 180
           YKKGI  + + ++V V
Sbjct: 42  YKKGIEELEKGIAVIV 57


>2wmi_A Fucolectin-related protein; glycoside hydrolase, hydrolase,
           fucose utilization, blood group antigen; HET: A2G GAL
           FUC; 1.90A {Streptococcus pneumoniae} PDB: 2wmj_A*
           2wmk_A* 2wmi_B* (A:1-423)
          Length = 423

 Score = 25.6 bits (56), Expect = 8.0
 Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 16/60 (26%)

Query: 137 RAKKAVMDNRQLIIYPEGTRRSPG-----------DMPIYKKGIAHIYESLSVPVIPIVV 185
            +K+ V+++ ++ I+ + + +  G             P+Y  G  ++     +P IP V+
Sbjct: 346 PSKEKVLEDTKVFIHGDYSNKGNGKFFVNVNTDREQTPLYMTGRYNV-----IPAIPGVL 400


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.330    0.144    0.446 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,056,448
Number of extensions: 92541
Number of successful extensions: 237
Number of sequences better than 10.0: 1
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 12
Length of query: 266
Length of database: 4,956,049
Length adjustment: 87
Effective length of query: 179
Effective length of database: 2,015,014
Effective search space: 360687506
Effective search space used: 360687506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (25.1 bits)