RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|255764499|ref|YP_003064993.2| 1-acyl-sn-glycerol-3-phosphate
acyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(266 letters)
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four
helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1
PDB: 1k30_A
Length = 367
Score = 50.7 bits (121), Expect = 3e-07
Identities = 27/197 (13%), Positives = 57/197 (28%), Gaps = 34/197 (17%)
Query: 67 DNIP-STGCIIAIKHQSSWDTFYFLTCI--------QDPIFILKHTVFYIPIIGFYCFKQ 117
+ + ++ HQ+ D + ++ IF+ V P+ + +
Sbjct: 124 EKLQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGR 183
Query: 118 GMIGVKRNSKNLDMKSI-----------INRAKKAVMDNRQLI-IYPEGTRRSPGDM--- 162
+I V D+ + + + QLI I P G R P
Sbjct: 184 NLICVYSKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWIAPSGGRDRPDPSTGE 243
Query: 163 -------PIYKKGIAHIYESLSVP--VIPIVVH-AGLFWPRKKFMRYPGNFKVRVLKPIP 212
+ + + VP + P+ + + P + G +V
Sbjct: 244 WYPAPFDASSVDNMRRLIQHSDVPGHLFPLALLCHDIMPPPSQVEIEIGEKRVIAFNGAG 303
Query: 213 AGIPRKIFFAELQEKME 229
+ +I F E+ +
Sbjct: 304 LSVAPEISFEEIAATHK 320
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 48.8 bits (116), Expect = 1e-06
Identities = 56/304 (18%), Positives = 96/304 (31%), Gaps = 125/304 (41%)
Query: 22 VSM--IVLL-LCCF-ITRKQCLYIAKKWAHVNQL----LLKYITKTTVQIEGVDNIPSTG 73
+S I ++ L + +T + L Y+ T G S G
Sbjct: 236 ISCPLIGVIQLAHYVVT---A--------KLLGFTPGELRSYLKGAT----G----HSQG 276
Query: 74 CI--IAIKHQSSWDTFY--FLTCIQDPIFILKHTVFYIPIIGFYC---FKQGMI--GVKR 124
+ +AI SW++F+ I +L F+ IG C + + +
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAIT----VL----FF---IGVRCYEAYPNTSLPPSILE 325
Query: 125 NSKNLD------MKSIINRAKKAV---MD--NRQLIIYPEGTRRSPGDMPIYKKGIAHIY 173
+S + M SI N ++ V ++ N L P + +
Sbjct: 326 DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL---PA-GK--------------QVE 367
Query: 174 ESLSVPVI--P--IVVHAGLFWPRKKFMRYP----G-NFKVRVLKPIPAG-----IP--- 216
SL + +VV +G P P G N +R K P+G IP
Sbjct: 368 ISL----VNGAKNLVV-SG---P-------PQSLYGLNLTLRKAKA-PSGLDQSRIPFSE 411
Query: 217 RKIFFAE-------------LQEKMEHASNNLLLETIRDNP-QLYIPA-STKKALQHLRQ 261
RK+ F+ L + + +L+ + N + IP T LR
Sbjct: 412 RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG-SDLRV 470
Query: 262 IQNN 265
+ +
Sbjct: 471 LSGS 474
Score = 27.2 bits (60), Expect = 4.0
Identities = 15/103 (14%), Positives = 24/103 (23%), Gaps = 37/103 (35%)
Query: 122 VKRNSKNLDMKSIINRAKKAVMDNRQLII-------Y-------------PEGTRRSPGD 161
K LD I +K NR L + + D
Sbjct: 396 AK-APSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD 454
Query: 162 --MPIYKKGIAHIY-----ESLSVPVIPIVV----HAGLFWPR 193
+P+Y + LS + +V + W
Sbjct: 455 IQIPVY-----DTFDGSDLRVLSGSISERIVDCIIRLPVKWET 492
>1vmi_A Putative phosphate acetyltransferase; NP_416953.1, structural
genomics, JCSG, protein structure initiative, PSI; 2.32A
{Escherichia coli} SCOP: c.77.1.5
Length = 355
Score = 28.1 bits (62), Expect = 2.1
Identities = 4/25 (16%), Positives = 14/25 (56%)
Query: 131 MKSIINRAKKAVMDNRQLIIYPEGT 155
+++II R ++ + +++P+
Sbjct: 11 LRAIIERCRELALRAPARVVFPDAL 35
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 116
Score = 27.9 bits (62), Expect = 2.7
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 165 YKKGIAHIYESLSVPVIPIVVHAGLFWPRKKFMR 198
YK+GI H+ +S+ G W + M+
Sbjct: 45 YKQGIGHLLRGISISSKESEHT-GPGWESARQMQ 77
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target
base partner, 5- methylpyrimidin-2(1H)-ONE, base
flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus}
SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A*
2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A*
1g38_A*
Length = 421
Score = 26.4 bits (57), Expect = 6.9
Identities = 19/147 (12%), Positives = 46/147 (31%), Gaps = 11/147 (7%)
Query: 84 WDTFYFLTCIQDPIFILKHTVFYIPIIGFYCFKQGMIGVKRNSKNLDMKSIINRAKKAVM 143
+ P + +P++ K G + ++N L M + +
Sbjct: 267 RFAARSPEFKKHPAVRKEPGPGLVPVLTGRNLKPGWVDYEKNHSGLWMPKERAKELRDFY 326
Query: 144 DNRQLIIYPEGTRR---SPGDMPIYKKGIAHIYESLSVPVIPIVVHAGL------FWPRK 194
L++ R + + + H+ V + P + L R
Sbjct: 327 ATPHLVVAHTKGTRVVAAWDERAYPWREEFHLLPKEGVRLDPSSLVQWLNSEAMQKHVRT 386
Query: 195 KFMRYPGNFKVRVLKPIPAGIPRKIFF 221
+ + + +R+L+ +P + R+ F
Sbjct: 387 LYRDFVPHLTLRMLERLP--VRREYGF 411
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.330 0.144 0.446
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,365,650
Number of extensions: 110229
Number of successful extensions: 338
Number of sequences better than 10.0: 1
Number of HSP's gapped: 336
Number of HSP's successfully gapped: 16
Length of query: 266
Length of database: 5,693,230
Length adjustment: 91
Effective length of query: 175
Effective length of database: 3,487,026
Effective search space: 610229550
Effective search space used: 610229550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (25.7 bits)