BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|255764499|ref|YP_003064993.2| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Candidatus Liberibacter asiaticus str. psy62] (266 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|255764499|ref|YP_003064993.2| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 266 Score = 546 bits (1408), Expect = e-157, Method: Compositional matrix adjust. Identities = 266/266 (100%), Positives = 266/266 (100%) Query: 1 MIMIFIRSLIFNIFFFIHIFIVSMIVLLLCCFITRKQCLYIAKKWAHVNQLLLKYITKTT 60 MIMIFIRSLIFNIFFFIHIFIVSMIVLLLCCFITRKQCLYIAKKWAHVNQLLLKYITKTT Sbjct: 1 MIMIFIRSLIFNIFFFIHIFIVSMIVLLLCCFITRKQCLYIAKKWAHVNQLLLKYITKTT 60 Query: 61 VQIEGVDNIPSTGCIIAIKHQSSWDTFYFLTCIQDPIFILKHTVFYIPIIGFYCFKQGMI 120 VQIEGVDNIPSTGCIIAIKHQSSWDTFYFLTCIQDPIFILKHTVFYIPIIGFYCFKQGMI Sbjct: 61 VQIEGVDNIPSTGCIIAIKHQSSWDTFYFLTCIQDPIFILKHTVFYIPIIGFYCFKQGMI 120 Query: 121 GVKRNSKNLDMKSIINRAKKAVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPV 180 GVKRNSKNLDMKSIINRAKKAVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPV Sbjct: 121 GVKRNSKNLDMKSIINRAKKAVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPV 180 Query: 181 IPIVVHAGLFWPRKKFMRYPGNFKVRVLKPIPAGIPRKIFFAELQEKMEHASNNLLLETI 240 IPIVVHAGLFWPRKKFMRYPGNFKVRVLKPIPAGIPRKIFFAELQEKMEHASNNLLLETI Sbjct: 181 IPIVVHAGLFWPRKKFMRYPGNFKVRVLKPIPAGIPRKIFFAELQEKMEHASNNLLLETI 240 Query: 241 RDNPQLYIPASTKKALQHLRQIQNNS 266 RDNPQLYIPASTKKALQHLRQIQNNS Sbjct: 241 RDNPQLYIPASTKKALQHLRQIQNNS 266 >gi|254780222|ref|YP_003064635.1| DNA topoisomerase IV subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 686 Score = 26.6 bits (57), Expect = 0.48, Method: Compositional matrix adjust. Identities = 11/23 (47%), Positives = 15/23 (65%) Query: 237 LETIRDNPQLYIPASTKKALQHL 259 LE +R P +YI + +KAL HL Sbjct: 55 LEPVRMRPGMYIGGTDEKALHHL 77 >gi|254780369|ref|YP_003064782.1| Electron transfer flavoprotein alpha subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 318 Score = 24.3 bits (51), Expect = 2.1, Method: Compositional matrix adjust. Identities = 8/23 (34%), Positives = 16/23 (69%) Query: 243 NPQLYIPASTKKALQHLRQIQNN 265 +P+LYI A A+QH+ ++++ Sbjct: 259 SPELYIAAGISGAIQHISGMKDS 281 >gi|254780523|ref|YP_003064936.1| flagellar hook-associated protein FlgL [Candidatus Liberibacter asiaticus str. psy62] Length = 357 Score = 22.7 bits (47), Expect = 6.6, Method: Compositional matrix adjust. Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 8/72 (11%) Query: 1 MIMIFIRSLIFNIFFFIHIFIVSMIVLLLCCFITR-----KQCLYIAKKWAHVNQLLLKY 55 M+ F+ ++ H+ + SM + FI + Y A W++ + +KY Sbjct: 165 MLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKY 224 Query: 56 ITKTTVQIEGVD 67 K T EG+D Sbjct: 225 RIKDT---EGID 233 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.330 0.144 0.446 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 173,441 Number of Sequences: 1233 Number of extensions: 7367 Number of successful extensions: 21 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 8 length of query: 266 length of database: 328,796 effective HSP length: 72 effective length of query: 194 effective length of database: 240,020 effective search space: 46563880 effective search space used: 46563880 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 37 (18.9 bits)