BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|255764499|ref|YP_003064993.2| 1-acyl-sn-glycerol-3-phosphate
acyltransferase [Candidatus Liberibacter asiaticus str. psy62]
         (266 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|255764499|ref|YP_003064993.2| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 266

 Score =  546 bits (1408), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 266/266 (100%), Positives = 266/266 (100%)

Query: 1   MIMIFIRSLIFNIFFFIHIFIVSMIVLLLCCFITRKQCLYIAKKWAHVNQLLLKYITKTT 60
           MIMIFIRSLIFNIFFFIHIFIVSMIVLLLCCFITRKQCLYIAKKWAHVNQLLLKYITKTT
Sbjct: 1   MIMIFIRSLIFNIFFFIHIFIVSMIVLLLCCFITRKQCLYIAKKWAHVNQLLLKYITKTT 60

Query: 61  VQIEGVDNIPSTGCIIAIKHQSSWDTFYFLTCIQDPIFILKHTVFYIPIIGFYCFKQGMI 120
           VQIEGVDNIPSTGCIIAIKHQSSWDTFYFLTCIQDPIFILKHTVFYIPIIGFYCFKQGMI
Sbjct: 61  VQIEGVDNIPSTGCIIAIKHQSSWDTFYFLTCIQDPIFILKHTVFYIPIIGFYCFKQGMI 120

Query: 121 GVKRNSKNLDMKSIINRAKKAVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPV 180
           GVKRNSKNLDMKSIINRAKKAVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPV
Sbjct: 121 GVKRNSKNLDMKSIINRAKKAVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPV 180

Query: 181 IPIVVHAGLFWPRKKFMRYPGNFKVRVLKPIPAGIPRKIFFAELQEKMEHASNNLLLETI 240
           IPIVVHAGLFWPRKKFMRYPGNFKVRVLKPIPAGIPRKIFFAELQEKMEHASNNLLLETI
Sbjct: 181 IPIVVHAGLFWPRKKFMRYPGNFKVRVLKPIPAGIPRKIFFAELQEKMEHASNNLLLETI 240

Query: 241 RDNPQLYIPASTKKALQHLRQIQNNS 266
           RDNPQLYIPASTKKALQHLRQIQNNS
Sbjct: 241 RDNPQLYIPASTKKALQHLRQIQNNS 266


>gi|254780222|ref|YP_003064635.1| DNA topoisomerase IV subunit B [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 686

 Score = 26.6 bits (57), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 237 LETIRDNPQLYIPASTKKALQHL 259
           LE +R  P +YI  + +KAL HL
Sbjct: 55  LEPVRMRPGMYIGGTDEKALHHL 77


>gi|254780369|ref|YP_003064782.1| Electron transfer flavoprotein alpha subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 318

 Score = 24.3 bits (51), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 8/23 (34%), Positives = 16/23 (69%)

Query: 243 NPQLYIPASTKKALQHLRQIQNN 265
           +P+LYI A    A+QH+  ++++
Sbjct: 259 SPELYIAAGISGAIQHISGMKDS 281


>gi|254780523|ref|YP_003064936.1| flagellar hook-associated protein FlgL [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 357

 Score = 22.7 bits (47), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 1   MIMIFIRSLIFNIFFFIHIFIVSMIVLLLCCFITR-----KQCLYIAKKWAHVNQLLLKY 55
           M+  F+     ++    H+ + SM    +  FI +         Y A  W++ +   +KY
Sbjct: 165 MLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKY 224

Query: 56  ITKTTVQIEGVD 67
             K T   EG+D
Sbjct: 225 RIKDT---EGID 233


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.330    0.144    0.446 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,441
Number of Sequences: 1233
Number of extensions: 7367
Number of successful extensions: 21
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 8
length of query: 266
length of database: 328,796
effective HSP length: 72
effective length of query: 194
effective length of database: 240,020
effective search space: 46563880
effective search space used: 46563880
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 37 (18.9 bits)