Query         gi|255764500|ref|YP_003064987.2| hypothetical protein CLIBASIA_02305 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 200
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 39220
Date          Sun May 29 22:28:43 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 255764500.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 TIGR03212 uraD_N-term-dom puta  60.4      14 0.00036   17.9   3.9   64  129-192   118-187 (297)
  2 COG1342 Predicted DNA-binding   42.6      22 0.00056   16.7   2.6   40  137-178    44-83  (99)
  3 pfam12356 DUF3643 Protein of u  41.4      14 0.00036   17.9   1.4   14  124-137    33-46  (165)
  4 LOAD_SKIP consensus             40.8      29 0.00075   15.9   5.3  101   51-159    60-162 (168)
  5 TIGR01168 YSIRK_signal Gram-po  38.1      17 0.00044   17.3   1.4   20    8-27     12-34  (44)
  6 KOG4330 consensus               37.8      33 0.00083   15.6   3.6   26   79-104   135-162 (206)
  7 KOG3375 consensus               35.2      35 0.00089   15.4   2.6   46  130-175   119-166 (174)
  8 TIGR01181 dTDP_gluc_dehyt dTDP  31.6      22 0.00056   16.7   1.1   32  145-185   149-183 (340)
  9 TIGR01172 cysE serine O-acetyl  29.7      44  0.0011   14.8   2.6   47  113-159    14-60  (163)
 10 TIGR02852 spore_dpaB dipicolin  29.5      11 0.00029   18.5  -0.7   47   50-98     71-121 (188)
 11 pfam09293 RNaseH_C T4 RNase H,  28.7      43  0.0011   14.9   2.2   93   41-134    10-111 (122)
 12 PRK04217 hypothetical protein;  27.3      49  0.0012   14.5   2.6   40  137-178    53-92  (110)
 13 TIGR01559 squal_synth farnesyl  27.0      35 0.00089   15.4   1.5   46  130-190   208-255 (350)
 14 pfam02001 DUF134 Protein of un  26.5      50  0.0013   14.5   2.6   40  137-178    47-86  (100)
 15 KOG4504 consensus               25.2      45  0.0011   14.8   1.8   51   15-68     13-67  (370)
 16 COG3058 FdhE Uncharacterized p  23.9      56  0.0014   14.1   3.5   49   63-111    67-139 (308)
 17 COG2320 GrpB Uncharacterized c  20.7      65  0.0017   13.7   2.1   26  145-170   150-175 (185)

No 1  
>TIGR03212 uraD_N-term-dom putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.
Probab=60.45  E-value=14  Score=17.92  Aligned_cols=64  Identities=16%  Similarity=0.184  Sum_probs=43.9

Q ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----H-HHHHHHHHHHHCCCCCCCHHHC
Q ss_conf             99987765144455306898987764077798866554311-----2-2433345433043323311100
Q gi|255764500|r  129 SIIWHRYQHMDYKGKTEQEKRALAKQSRDDFQRYATAQAAN-----Q-KAADMLMLATYGLQYDDSLTKI  192 (200)
Q Consensus       129 siiwhryqhmdykgkteqekralakqsrddfqryataqaan-----q-kaadmlmlatyglqyddsltki  192 (200)
                      -|..|-|.|.++.+-++++.|++-.++.+-+++..-.....     . ...--|++...|+.|+-++.--
T Consensus       118 Ei~~HGy~~~~~~~l~~~~E~~~i~~~~~~l~~~tG~rP~Gw~s~~~s~~T~~Ll~~~~G~~Y~sd~~~D  187 (297)
T TIGR03212       118 EIASHGLRWIDYQDMDEAQEREHIAEAIRLHTEVTGERPLGWYTGRTSPNTRRLVAEEGGFLYDSDSYAD  187 (297)
T ss_pred             CHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCEEECCCCCC
T ss_conf             3775433033766699899999999999999986599988117899996336899995896898988888


No 2  
>COG1342 Predicted DNA-binding proteins [General function prediction only]
Probab=42.62  E-value=22  Score=16.67  Aligned_cols=40  Identities=35%  Similarity=0.440  Sum_probs=32.1

Q ss_pred             HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             144455306898987764077798866554311224333454
Q gi|255764500|r  137 HMDYKGKTEQEKRALAKQSRDDFQRYATAQAANQKAADMLML  178 (200)
Q Consensus       137 hmdykgkteqekralakqsrddfqryataqaanqkaadmlml  178 (200)
                      -.||.|-+.+|--+.-.-||..|+|--  ++|-+|.||+|.-
T Consensus        44 LvD~~~l~QeeAA~rMgISr~Tfwr~l--~sAR~KvA~aLve   83 (99)
T COG1342          44 LVDYEGLTQEEAALRMGISRQTFWRLL--TSARKKVADALVE   83 (99)
T ss_pred             HHHHHHCCHHHHHHHHCCCHHHHHHHH--HHHHHHHHHHHHC
T ss_conf             886861057899998464299999999--9999999999855


No 3  
>pfam12356 DUF3643 Protein of unknown function (DUF3643). This family of proteins is found in eukaryotes. Proteins in this family are typically between 217 and 4852 amino acids in length. There is a conserved TLA sequence motif.
Probab=41.38  E-value=14  Score=17.87  Aligned_cols=14  Identities=36%  Similarity=0.930  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             78999999877651
Q gi|255764500|r  124 EEAIASIIWHRYQH  137 (200)
Q Consensus       124 eeaiasiiwhryqh  137 (200)
                      -..||+|+||-|+-
T Consensus        33 ihcvAsILW~s~~~   46 (165)
T pfam12356        33 LHCVAAILWHSYEL   46 (165)
T ss_pred             HHHHHHHHHHHHHC
T ss_conf             99999999998751


No 4  
>LOAD_SKIP consensus
Probab=40.78  E-value=29  Score=15.91  Aligned_cols=101  Identities=28%  Similarity=0.261  Sum_probs=56.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHH--HHHHCCCHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf             87899878756554898577786565433210100286100247268--7420622456887788666543214178999
Q gi|255764500|r   51 EPRKPTPLDHSDSQHPPVLPNSENNAHGDEPIKKSEKPTFRRNQPVI--ENLRKPTEAEKEKILAARDRYQKTNNEEAIA  128 (200)
Q Consensus        51 eprkptpldhsdsqhppvlpnsennahgdepikksekptfrrnqpvi--enlrkpteaekekilaardryqktnneeaia  128 (200)
                      -|||.|.-|..+-.-||...|-.|+.--.-|+.|--.-.-|..|.|-  +++-+-.||--.---.||....        .
T Consensus        60 p~rKlT~eeq~~WkIPp~ISNWKN~kGyTIpLDKRlaadgRglq~v~iNdkFa~lseAL~~Aer~AREev~--------~  131 (168)
T LOAD_SKIP        60 PPRKVTVKDQNDWKIPPCVSNWKNPKGYTIPLDKRLAADGRGLQDVEINDNFAKLSEALYIAEKKAREEVR--------A  131 (168)
T ss_pred             CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--------H
T ss_conf             98778987897077998756773888852070577652377877531426799999999999999999999--------9


Q ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             9998776514445530689898776407779
Q gi|255764500|r  129 SIIWHRYQHMDYKGKTEQEKRALAKQSRDDF  159 (200)
Q Consensus       129 siiwhryqhmdykgkteqekralakqsrddf  159 (200)
                      --.-.+-.-+.-+-+-|+.-|.||.++|.+-
T Consensus       132 Rae~~k~~a~kEk~~kEe~LR~lA~~AR~eR  162 (168)
T LOAD_SKIP       132 RAELERKLAQKEKEEKEDKLKELAQKAREER  162 (168)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999985


No 5  
>TIGR01168 YSIRK_signal Gram-positive signal peptide, YSIRK family; InterPro: IPR005877    Many surface proteins found in Streptococcus, Staphylococcus, and related lineages share apparently homologous signal sequences. A motif resembling [YF]SIRKxxxGxxS[VIA] appears at the start of the transmembrane domain. The GxxS motif appears perfectly conserved, suggesting a specific function and not just homology. ; GO: 0016020 membrane.
Probab=38.08  E-value=17  Score=17.34  Aligned_cols=20  Identities=40%  Similarity=0.542  Sum_probs=14.2

Q ss_pred             EEEEHH--HHHHHHHHH-HHCCC
Q ss_conf             430010--058988977-74135
Q gi|255764500|r    8 VSIKKL--GIVSVLIPV-VLGVS   27 (200)
Q Consensus         8 vsikkl--givsvlipv-vlgvs   27 (200)
                      -||+||  |++||+|-. ++-.+
T Consensus        12 ySIRKlsvG~aSV~va~~~f~g~   34 (44)
T TIGR01168        12 YSIRKLSVGVASVLVASTLFFGG   34 (44)
T ss_pred             EEHHHHHHHHHHHHHHHHHHHCC
T ss_conf             21034478899999888760015


No 6  
>KOG4330 consensus
Probab=37.83  E-value=33  Score=15.62  Aligned_cols=26  Identities=38%  Similarity=0.480  Sum_probs=16.7

Q ss_pred             CCCHHHCCCCCCCC--CCHHHHHHHCCC
Q ss_conf             32101002861002--472687420622
Q gi|255764500|r   79 DEPIKKSEKPTFRR--NQPVIENLRKPT  104 (200)
Q Consensus        79 depikksekptfrr--nqpvienlrkpt  104 (200)
                      ..+.++||||+|.-  -|-+.|.|-|--
T Consensus       135 s~~mr~~ek~~FTlrqVqmICErllKer  162 (206)
T KOG4330         135 SSTMRKSEKPLFTLRQVQMICERLLKER  162 (206)
T ss_pred             CCHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             3211114432000999999999999999


No 7  
>KOG3375 consensus
Probab=35.17  E-value=35  Score=15.43  Aligned_cols=46  Identities=39%  Similarity=0.406  Sum_probs=28.7

Q ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Q ss_conf             9987765144455306898987764077798866554--311224333
Q gi|255764500|r  130 IIWHRYQHMDYKGKTEQEKRALAKQSRDDFQRYATAQ--AANQKAADM  175 (200)
Q Consensus       130 iiwhryqhmdykgkteqekralakqsrddfqryataq--aanqkaadm  175 (200)
                      ---.||..|..-|||+|-+.-||.-.----||--+|.  -+..||++.
T Consensus       119 rA~eRYmklh~aGKTeqAkaDLaRlalir~qReeaa~kre~ekkaa~~  166 (174)
T KOG3375         119 RAKERYMKLHLAGKTEQAKADLARLALIRQQREEAAAKREAEKKAADV  166 (174)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             899999999970441788888999889888888988877878754014


No 8  
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase; InterPro: IPR005888    The conversion of dTDP-glucose into dTDP-4-keto-6-deoxyglucose by Escherichia coli dTDP-glucose 4,6-dehydratase) takes place in the active site in three steps: dehydrogenation to dTDP-4-ketoglucose, dehydration to dTDP-4-ketoglucose-5,6-ene, and rereduction of C6 to the methyl group. The 4,6-dehydratase makes use of tightly bound NAD^+ as the coenzyme for transiently oxidizing the substrate, activating it for the dehydration step . This and other 4,6-dehydratases catalyze the first committed step in all 6-deoxysugar biosynthetic pathways described to date. Numerous 6-deoxysugars are used in bacterial lipopolysaccharide production as well as in the biosynthesis of a diverse array of secondary metabolites.; GO: 0008460 dTDP-glucose 46-dehydratase activity, 0009225 nucleotide-sugar metabolic process.
Probab=31.57  E-value=22  Score=16.69  Aligned_cols=32  Identities=44%  Similarity=0.593  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCC
Q ss_conf             68989877640777988665543112243334543---304332
Q gi|255764500|r  145 EQEKRALAKQSRDDFQRYATAQAANQKAADMLMLA---TYGLQY  185 (200)
Q Consensus       145 eqekralakqsrddfqryataqaanqkaadmlmla---tyglqy  185 (200)
                      -.|.-.|+-.|-     |    .|-.-|+|||.+|   ||||.+
T Consensus       149 ftE~tpl~PsSP-----Y----SASKAasD~LVrAy~rTYGLp~  183 (340)
T TIGR01181       149 FTETTPLAPSSP-----Y----SASKAASDLLVRAYHRTYGLPV  183 (340)
T ss_pred             EEECCCCCCCCC-----H----HHHHHHHHHHHHHHHHHCCCCE
T ss_conf             423278877872-----4----5889888789888887548860


No 9  
>TIGR01172 cysE serine O-acetyltransferase; InterPro: IPR005881    The biosynthesis of L-cysteine is the predominant way by which inorganic sulphur is incorporated into organic compounds. In this process, the most abundant utilizable source of sulphur, inorganic sulphate, is taken up and reduced to sulphide. Sulphide is used to produce L-cysteine, which serves for protein synthesis or the production of other sulphur-containing organic compounds. Two routes for cysteine biosynthesis in nature have been documented. Serine transacetylase (2.3.1.30 from EC) catalyzes steps in pathway I, the activation of L-serine by acetyl-coenzyme A, yielding O-acetyl-L-serine.; GO: 0009001 serine O-acetyltransferase activity, 0006535 cysteine biosynthetic process from serine, 0005737 cytoplasm.
Probab=29.66  E-value=44  Score=14.80  Aligned_cols=47  Identities=19%  Similarity=0.077  Sum_probs=33.5

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             86665432141789999998776514445530689898776407779
Q gi|255764500|r  113 AARDRYQKTNNEEAIASIIWHRYQHMDYKGKTEQEKRALAKQSRDDF  159 (200)
Q Consensus       113 aardryqktnneeaiasiiwhryqhmdykgkteqekralakqsrddf  159 (200)
                      ||+...+---.-.-+-.+.|||..|.=|+-+-.---|.+..++|--|
T Consensus        14 Aa~~~l~vll~YpG~HA~~~yR~aH~Ly~~~~k~lAr~~~~~~r~~t   60 (163)
T TIGR01172        14 AARSYLEVLLYYPGLHALWAYRFAHALYKRGFKFLARLISNFIRVLT   60 (163)
T ss_pred             CCCHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
T ss_conf             60123789772637899999998656762463179999987665530


No 10 
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit; InterPro: IPR014214   Members of this entry represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation..
Probab=29.49  E-value=11  Score=18.48  Aligned_cols=47  Identities=40%  Similarity=0.561  Sum_probs=30.9

Q ss_pred             CCCCCC-CCCCCCCCCCCCCCCCCC---CCCCCCCCHHHCCCCCCCCCCHHHH
Q ss_conf             887899-878756554898577786---5654332101002861002472687
Q gi|255764500|r   50 GEPRKP-TPLDHSDSQHPPVLPNSE---NNAHGDEPIKKSEKPTFRRNQPVIE   98 (200)
Q Consensus        50 geprkp-tpldhsdsqhppvlpnse---nnahgdepikksekptfrrnqpvie   98 (200)
                      -||--| .|||--=  --|.--||-   -||+-|.|+--.-|-|.|-++||+-
T Consensus        71 AEP~GP~~~LD~mv--iaP~TGNsmsKlANA~tDspVLMAAKA~lRN~~PVvL  121 (188)
T TIGR02852        71 AEPFGPKVPLDVMV--IAPLTGNSMSKLANAITDSPVLMAAKATLRNNKPVVL  121 (188)
T ss_pred             CCCCCCCCCCCEEE--ECCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf             54597697533688--7788621389984215897778877877517897898


No 11 
>pfam09293 RNaseH_C T4 RNase H, C terminal. Members of this family are found in T4 RNaseH ribonuclease, and adopt a SAM domain-like fold, consisting of a bundle of four/five helices. These residues may have a role in providing a docking site for other proteins or enzymes in the replication fork.
Probab=28.71  E-value=43  Score=14.85  Aligned_cols=93  Identities=18%  Similarity=0.288  Sum_probs=41.7

Q ss_pred             EEECCCCCCCCCCCCCCCCCC-----CCCCCCCCCC-CCCCCCCCCC---HHHCCCCCCCCCCHHHHHHHCCCHHHHHHH
Q ss_conf             132057777887899878756-----5548985777-8656543321---010028610024726874206224568877
Q gi|255764500|r   41 PILKDDKNDGEPRKPTPLDHS-----DSQHPPVLPN-SENNAHGDEP---IKKSEKPTFRRNQPVIENLRKPTEAEKEKI  111 (200)
Q Consensus        41 pilkddkndgeprkptpldhs-----dsqhppvlpn-sennahgdep---ikksekptfrrnqpvienlrkpteaekeki  111 (200)
                      -|||.|+.||-|---.+=|.-     .-..+|+--. -+.-...+.|   .-..+.--|.||+-.|.--.-| +.-+++|
T Consensus        10 hIlkGD~~DGIPNiLS~Dd~fvt~veG~RQkPiskKkl~~~~~~~~~~~~~~~e~~rny~RN~~LIDL~~iP-~~i~~~I   88 (122)
T pfam09293        10 KIIKGDKKDGVASIKVRSDYILTRVEGERAPSIRTKELEAIFDREDPKVLLTEEEYARYDENRELIDFDFIP-DDIADNI   88 (122)
T ss_pred             HHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHCC-HHHHHHH
T ss_conf             822678868878746688623215676568984099999998668844348999999997537772811184-9999999


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             88666543214178999999877
Q gi|255764500|r  112 LAARDRYQKTNNEEAIASIIWHR  134 (200)
Q Consensus       112 laardryqktnneeaiasiiwhr  134 (200)
                      +..-..+...+...-.--.|=+|
T Consensus        89 i~~y~~~~~~~r~kll~YFi~~r  111 (122)
T pfam09293        89 IEAYNTYKVPPRGKIYSYFVKNG  111 (122)
T ss_pred             HHHHHCCCCCCHHHHHHHHHHHH
T ss_conf             99986489886215499999999


No 12 
>PRK04217 hypothetical protein; Provisional
Probab=27.27  E-value=49  Score=14.53  Aligned_cols=40  Identities=33%  Similarity=0.375  Sum_probs=31.8

Q ss_pred             HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             144455306898987764077798866554311224333454
Q gi|255764500|r  137 HMDYKGKTEQEKRALAKQSRDDFQRYATAQAANQKAADMLML  178 (200)
Q Consensus       137 hmdykgkteqekralakqsrddfqryataqaanqkaadmlml  178 (200)
                      -.||.|.+..|--..-.-||..|||--  ..|.+|-|+.|.-
T Consensus        53 L~D~egl~qeeaA~~M~VSR~Tf~ril--~~AR~KvA~aLv~   92 (110)
T PRK04217         53 LVDYEGLTQEEAGKRMGVSRGTVWRAL--TSARKKVAQMLVE   92 (110)
T ss_pred             HHHHCCCCHHHHHHHCCCCHHHHHHHH--HHHHHHHHHHHHC
T ss_conf             873607989999988497699999999--9999999999867


No 13 
>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase; InterPro: IPR006449   This family of sequences describe farnesyl-diphosphate farnesyltransferase, also known as squalene synthase, as found in eukaryotes. This family is related to phytoene synthases. Tentatively identified archaeal homologs lack the C-terminal predicted transmembrane region universally conserved among members of this family and therefore are not included in this group.    These enzymes catalyse the formation of squalene by the reductive dimerisation of two farnesyl diphosphate molecules in a two-step reaction. This reaction occurs at the final branch point of the isoprenoid biosynthesis pathway, and is the first committed step in cholesterol biosynthesis.  2 farnesyl diphosphate ---> presqualene diphosphate ---> squalene    The human enzyme (P37268 from SWISSPROT) is a membrane-bound monomer which folds as a single domain . A large channel surrounded by five alpha helices runs through the centre of the protein. One end of this channel is exposed to solvent, while the other is completely enclosed and surrounded by hydrophobic residues. The two half reactions occur at different active sites in this channel. The first half reaction occurs at one end of the channel, then the intermediate is thought to move into the enclosed pocket where the second half reaction occurs. ; GO: 0004310 farnesyl-diphosphate farnesyltransferase activity, 0008610 lipid biosynthetic process, 0016021 integral to membrane.
Probab=27.02  E-value=35  Score=15.44  Aligned_cols=46  Identities=37%  Similarity=0.517  Sum_probs=28.4

Q ss_pred             HHHHHHHH--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf             99877651--44455306898987764077798866554311224333454330433233111
Q gi|255764500|r  130 IIWHRYQH--MDYKGKTEQEKRALAKQSRDDFQRYATAQAANQKAADMLMLATYGLQYDDSLT  190 (200)
Q Consensus       130 iiwhryqh--mdykgkteqekralakqsrddfqryataqaanqkaadmlmlatyglqyddslt  190 (200)
                      =||++|-.  -|++ +-|-++.|              -|.-|.-.++-|+-+++-|+|=++|+
T Consensus       208 EIWskYa~~L~Df~-~P~N~~~a--------------l~Clnelv~NAL~H~~D~L~YL~~l~  255 (350)
T TIGR01559       208 EIWSKYAKKLGDFK-KPENSEKA--------------LQCLNELVTNALSHATDCLTYLSSLR  255 (350)
T ss_pred             CHHHHHHHHHHHHC-CHHHHHHH--------------HHHHHHHHHHHHHCHHHHHHHHCCCC
T ss_conf             31666566677512-83678888--------------64368999878404899999850477


No 14 
>pfam02001 DUF134 Protein of unknown function DUF134. This family of archaeal proteins has no known function.
Probab=26.54  E-value=50  Score=14.45  Aligned_cols=40  Identities=33%  Similarity=0.370  Sum_probs=32.3

Q ss_pred             HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             144455306898987764077798866554311224333454
Q gi|255764500|r  137 HMDYKGKTEQEKRALAKQSRDDFQRYATAQAANQKAADMLML  178 (200)
Q Consensus       137 hmdykgkteqekralakqsrddfqryataqaanqkaadmlml  178 (200)
                      -+||.|-+..|--.--.-||..|||--  ..|.+|-|+.|.-
T Consensus        47 L~D~egl~QeeaA~~MgVSR~Tf~ril--~~ARkKvA~aLv~   86 (100)
T pfam02001        47 LVDYEDYTQEEAAKLMGISRRTVWRLL--TSARKKIADALVE   86 (100)
T ss_pred             HHHHCCCCHHHHHHHCCCCHHHHHHHH--HHHHHHHHHHHHC
T ss_conf             873607989999988497699999999--9999999999867


No 15 
>KOG4504 consensus
Probab=25.21  E-value=45  Score=14.75  Aligned_cols=51  Identities=29%  Similarity=0.339  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCEEEEEC----CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             589889777413557767543897311320----577778878998787565548985
Q gi|255764500|r   15 IVSVLIPVVLGVSNCDHSDSQHPPVIPILK----DDKNDGEPRKPTPLDHSDSQHPPV   68 (200)
Q Consensus        15 ivsvlipvvlgvsncdhsdsqhppvipilk----ddkndgeprkptpldhsdsqhppv   68 (200)
                      +..+++||.||+-   .+-+|..--|-+++    +--+||+|.|-|..+---+.|-|+
T Consensus        13 ll~~s~pv~L~~~---~~~~q~a~g~~v~~~~~~~l~~d~~pk~~~~~~~fCA~s~pn   67 (370)
T KOG4504          13 LLGGSKPVNLGRV---RDGPQWADGIIVLKYVDGDLCPDGIPKKSTTIRFFCAESQPN   67 (370)
T ss_pred             HHCCCCCEEEECC---CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCC
T ss_conf             8704543376215---787520255488873145538988777656422256404788


No 16 
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=23.89  E-value=56  Score=14.14  Aligned_cols=49  Identities=35%  Similarity=0.548  Sum_probs=24.9

Q ss_pred             CCCCCCCC-----CCCCCCCCCCCHHHCCCC---CCCCC----------------CHHHHHHHCCCHHHHHHH
Q ss_conf             54898577-----786565433210100286---10024----------------726874206224568877
Q gi|255764500|r   63 SQHPPVLP-----NSENNAHGDEPIKKSEKP---TFRRN----------------QPVIENLRKPTEAEKEKI  111 (200)
Q Consensus        63 sqhppvlp-----nsennahgdepikksekp---tfrrn----------------qpvienlrkpteaekeki  111 (200)
                      ++||+..+     +-+-+++|-.|++-++-+   .||.-                --+||+|+|-.++|-+-+
T Consensus        67 ~~~P~~~~~~~~~~~~sra~gkpPL~~~~~~r~p~w~~~L~alla~~~~~a~~~~~a~ie~L~ka~~~el~~~  139 (308)
T COG3058          67 SDHPLLMDLTDARLEESRAQGKPPLDISVLPREPHWRKLLMALLAELKPEANAAALAAIEQLEKASEQELESM  139 (308)
T ss_pred             HCCCCCCCCCHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             2499877776788999873699975576527980799999999986254676899999999998569999999


No 17 
>COG2320 GrpB Uncharacterized conserved protein [Function unknown]
Probab=20.71  E-value=65  Score=13.75  Aligned_cols=26  Identities=38%  Similarity=0.492  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             68989877640777988665543112
Q gi|255764500|r  145 EQEKRALAKQSRDDFQRYATAQAANQ  170 (200)
Q Consensus       145 eqekralakqsrddfqryataqaanq  170 (200)
                      ..-||-||.|+.++.++|+.+..+--
T Consensus       150 ~~lKr~laa~~~~e~~~Y~~~K~~~i  175 (185)
T COG2320         150 AELKRELAAQEDDEILRYTAAKSAFI  175 (185)
T ss_pred             HHHHHHHHHHCHHHHHHHHHHHCHHH
T ss_conf             99999999856488988876005789


Done!