Query gi|255764500|ref|YP_003064987.2| hypothetical protein CLIBASIA_02305 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 200 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 16:11:08 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 255764500.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3c7a_A Octopine dehydrogenase 26.2 44 0.0013 14.4 3.8 55 127-184 8-73 (142) 2 >1gyx_A YDCE, B1461, hypotheti 21.1 50 0.0015 14.1 1.7 22 140-161 8-30 (48) 3 >1cii_A Colicin IA; bacterioci 19.6 59 0.0018 13.6 4.0 31 146-181 155-185 (206) 4 >1brv_A Protein G, BRSV-G regi 17.8 44 0.0013 14.4 0.8 14 59-72 4-17 (32) 5 >1e6y_B Methyl-coenzyme M redu 14.4 72 0.0021 13.1 1.2 18 126-143 128-146 (160) 6 >1hbn_B Methyl-coenzyme M redu 14.2 74 0.0022 13.0 1.2 20 124-143 109-129 (162) 7 >1dqu_A Isocitrate lyase; beta 14.1 81 0.0024 12.8 1.7 17 139-155 27-43 (52) 8 >1yo3_A Dynein light chain 1; 14.1 81 0.0024 12.8 2.4 47 88-134 12-58 (102) 9 >1mio_B Nitrogenase molybdenum 13.6 83 0.0025 12.7 2.2 33 109-145 22-55 (81) 10 >3b5i_A S-adenosyl-L-methionin 11.8 95 0.0028 12.3 1.9 32 12-46 67-98 (374) No 1 >>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* (A:205-269,A:328-404) Probab=26.17 E-value=44 Score=14.41 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=35.8 Q ss_pred HHHHHHHHHHHCC----------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCC Q ss_conf 9999987765144----------4553068989877640777988665543112243334543-30433 Q gi|255764500|r 127 IASIIWHRYQHMD----------YKGKTEQEKRALAKQSRDDFQRYATAQAANQKAADMLMLA-TYGLQ 184 (200) Q Consensus 127 iasiiwhryqhmd----------ykgkteqekralakqsrddfqryataqaanqkaadmlmla-tyglq 184 (200) --+|.|+|+..-| |.|-.|-.-.-|.+-|.. -.++|+|-.|+--+|.|-- -|||- T Consensus 8 HPpiMYg~W~dWDG~P~~EkPLFYqgl~e~~A~lL~~vS~E---~~~iakaI~~~~p~~dmEDiP~GL~ 73 (142) T 3c7a_A 8 HPAILFGRWGSWDGKPVPEAPLFYQGIDQATADMLTACSNE---CKDVANAIMAACPGNDLEDIPMGMI 73 (142) T ss_dssp HHHHHHHHHTTCCSCCBSSCCBSGGGCCHHHHHHHHHHHHH---HHHHHHHHHHHSTTCCCTTTTTTHH T ss_pred CHHHHHHHHHHCCCCCCCCCCCHHCCCCHHHHHHHHHHHHH---HHHHHHHHCCCCCCCCHEECCCCHH T ss_conf 60999855312358854444300226998999999999999---9999998488778876321265289 No 2 >>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} (A:1-48) Probab=21.08 E-value=50 Score=14.06 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=16.1 Q ss_pred CCCC-CHHHHHHHHHHHHHHHHH Q ss_conf 4553-068989877640777988 Q gi|255764500|r 140 YKGK-TEQEKRALAKQSRDDFQR 161 (200) Q Consensus 140 ykgk-teqekralakqsrddfqr 161 (200) |-|. |++.||+|+..--+..-+ T Consensus 8 fpgrlteeQK~~Lae~iT~~v~~ 30 (48) T 1gyx_A 8 FPRELDEQQKAALAADITDVIIR 30 (48) T ss_dssp SCCCCCHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHH T ss_conf 72542278999988468999999 No 3 >>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} (A:1-206) Probab=19.61 E-value=59 Score=13.60 Aligned_cols=31 Identities=52% Similarity=0.640 Sum_probs=19.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 898987764077798866554311224333454330 Q gi|255764500|r 146 QEKRALAKQSRDDFQRYATAQAANQKAADMLMLATY 181 (200) Q Consensus 146 qekralakqsrddfqryataqaanqkaadmlmlaty 181 (200) .|.|.|..| +-.|-..||.|..|||||| |.| T Consensus 155 rearsl~~~---~~krqkdaq~adkkaadml--a~y 185 (206) T 1cii_A 155 REARSLIEQ---AEKRQKDAQNADKKAADML--AEY 185 (206) T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHH--HHH T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHH--HHH T ss_conf 999867999---9999999998999999989--988 No 4 >>1brv_A Protein G, BRSV-G region; attachment protein G of bovine respiratory syncytial virus, immunoglobulin-binding protein; NMR {Bovine respiratory syncytial virus} (A:) Probab=17.78 E-value=44 Score=14.42 Aligned_cols=14 Identities=43% Similarity=0.653 Sum_probs=7.9 Q ss_pred CCCCCCCCCCCCCC Q ss_conf 75655489857778 Q gi|255764500|r 59 DHSDSQHPPVLPNS 72 (200) Q Consensus 59 dhsdsqhppvlpns 72 (200) ||++||..|-.|-| T Consensus 4 Dhnn~QtlP~vPcs 17 (32) T 1brv_A 4 DHNNFQTLPYVPCS 17 (32) T ss_pred CCCCCCCCCCCCCH T ss_conf 44654304654422 No 5 >>1e6y_B Methyl-coenzyme M reductase I beta subunit; biological methanogenesis, NI-enzyme, oxidoreductase, NI enzyme; HET: MHS AGM F43 TP7; 1.6A {Methanosarcina barkeri} (B:24-183) Probab=14.36 E-value=72 Score=13.06 Aligned_cols=18 Identities=39% Similarity=0.783 Sum_probs=9.3 Q ss_pred HHHHHHHHHH-HHCCCCCC Q ss_conf 9999998776-51444553 Q gi|255764500|r 126 AIASIIWHRY-QHMDYKGK 143 (200) Q Consensus 126 aiasiiwhry-qhmdykgk 143 (200) .+-.-+|-+| |.|||.|- T Consensus 128 ~VkaAv~G~YPQt~D~~Gg 146 (160) T 1e6y_B 128 IVKSAVWGSYPQTMDLMGG 146 (160) T ss_dssp HHHHHHHTTTTTSSSCTTC T ss_pred HHHHHHHCCCCCCCCCCCC T ss_conf 7889987369887787776 No 6 >>1hbn_B Methyl-coenzyme M reductase I beta subunit; methanogenesis, biological methanogenesis, NI-enzyme, oxidoreductase; HET: MHS AGM MGN F43 TP7; 1.16A {Methanothermobacterthermautotrophicus} (B:44-186,B:405-423) Probab=14.19 E-value=74 Score=13.01 Aligned_cols=20 Identities=25% Similarity=0.602 Sum_probs=13.6 Q ss_pred HHHHHHHHHHHH-HHCCCCCC Q ss_conf 789999998776-51444553 Q gi|255764500|r 124 EEAIASIIWHRY-QHMDYKGK 143 (200) Q Consensus 124 eeaiasiiwhry-qhmdykgk 143 (200) --.+-.-+|-+| |.|||.|- T Consensus 109 a~~VkaAVwG~YPQt~D~~Gg 129 (162) T 1hbn_B 109 ANMVKAAVLGRYPQSVEYMGA 129 (162) T ss_dssp HHHHHHHHHTTTTTSSSCTTC T ss_pred HHHHHHHHHCCCCCHHHHHHC T ss_conf 467899986468502666410 No 7 >>1dqu_A Isocitrate lyase; beta barrel; 2.80A {Emericella nidulans} (A:308-359) Probab=14.10 E-value=81 Score=12.76 Aligned_cols=17 Identities=47% Similarity=0.616 Sum_probs=14.2 Q ss_pred CCCCCCHHHHHHHHHHH Q ss_conf 44553068989877640 Q gi|255764500|r 139 DYKGKTEQEKRALAKQS 155 (200) Q Consensus 139 dykgkteqekralakqs 155 (200) .-+||...|-|++||+- T Consensus 27 ~vkgkSn~EARaiAk~i 43 (52) T 1dqu_A 27 QSKGKSNLEARAIAKEI 43 (52) T ss_dssp HHTTCCHHHHHHHHHHH T ss_pred HCCCCCHHHHHHHHHHH T ss_conf 34677569999999985 No 8 >>1yo3_A Dynein light chain 1; structural genomics consortium, microtubule, malaria, SGC, transport protein; 1.65A {Plasmodium falciparum 3D7} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 1pwj_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A 1pwk_A (A:) Probab=14.09 E-value=81 Score=12.76 Aligned_cols=47 Identities=26% Similarity=0.249 Sum_probs=35.1 Q ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 61002472687420622456887788666543214178999999877 Q gi|255764500|r 88 PTFRRNQPVIENLRKPTEAEKEKILAARDRYQKTNNEEAIASIIWHR 134 (200) Q Consensus 88 ptfrrnqpvienlrkpteaekekilaardryqktnneeaiasiiwhr 134 (200) +.-...+++|..-.-|.+-..+-+-.+..-+++.+++..||.-|=.. T Consensus 12 ~~~~~~~~~i~~~dM~~~~~~~~~~~~~~al~~~~~~~diA~~IK~~ 58 (102) T 1yo3_A 12 SGLVPRGSVVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKE 58 (102) T ss_dssp ------CCCEEETTSCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHH T ss_pred CCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 46564677799779999999999999999998658689999999997 No 9 >>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} (B:269-309,B:419-458) Probab=13.59 E-value=83 Score=12.67 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=22.8 Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH-HHCCCCCCCH Q ss_conf 877886665432141789999998776-5144455306 Q gi|255764500|r 109 EKILAARDRYQKTNNEEAIASIIWHRY-QHMDYKGKTE 145 (200) Q Consensus 109 ekilaardryqktnneeaiasiiwhry-qhmdykgkte 145 (200) +++...|.|.+- --+-+-.|||| -.+.|+|--. T Consensus 22 ~~l~reRgrLvD----aM~D~H~yH~yfp~~GY~G~~~ 55 (81) T 1mio_B 22 ASIEEERGQLID----LMIDAQQYHYYNPKVGYKGAIR 55 (81) T ss_dssp HHHHHHHHHHHH----HHHHTHHHGGGSCSSBTHHHHH T ss_pred HHHHHHHHHHHH----HHHHHHHHCCCCCCCHHHHHHH T ss_conf 889876999999----9999998756777674877999 No 10 >>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid; HET: SAH; 2.75A {Arabidopsis thaliana} (A:) Probab=11.78 E-value=95 Score=12.33 Aligned_cols=32 Identities=16% Similarity=0.319 Sum_probs=13.5 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCC Q ss_conf 10058988977741355776754389731132057 Q gi|255764500|r 12 KLGIVSVLIPVVLGVSNCDHSDSQHPPVIPILKDD 46 (200) Q Consensus 12 klgivsvlipvvlgvsncdhsdsqhppvipilkdd 46 (200) -|..++.+|-.+-.. |. +..+.||-+-+.-.| T Consensus 67 tl~~v~~ii~~i~~~--~~-~~~~~~~e~~v~~nD 98 (374) T 3b5i_A 67 TVHIIDFIVKHISKR--FD-AAGIDPPEFTAFFSD 98 (374) T ss_dssp HHHHHHHHHHHHHHH--HH-HTTCCCCCEEEEEEE T ss_pred HHHHHHHHHHHHHHH--HH-HCCCCCCCEEEEECC T ss_conf 799999999999998--62-017999847997178 Done!