Query         gi|255764500|ref|YP_003064987.2| hypothetical protein CLIBASIA_02305 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 200
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 16:11:08 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 255764500.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3c7a_A Octopine dehydrogenase  26.2      44  0.0013   14.4   3.8   55  127-184     8-73  (142)
  2 >1gyx_A YDCE, B1461, hypotheti  21.1      50  0.0015   14.1   1.7   22  140-161     8-30  (48)
  3 >1cii_A Colicin IA; bacterioci  19.6      59  0.0018   13.6   4.0   31  146-181   155-185 (206)
  4 >1brv_A Protein G, BRSV-G regi  17.8      44  0.0013   14.4   0.8   14   59-72      4-17  (32)
  5 >1e6y_B Methyl-coenzyme M redu  14.4      72  0.0021   13.1   1.2   18  126-143   128-146 (160)
  6 >1hbn_B Methyl-coenzyme M redu  14.2      74  0.0022   13.0   1.2   20  124-143   109-129 (162)
  7 >1dqu_A Isocitrate lyase; beta  14.1      81  0.0024   12.8   1.7   17  139-155    27-43  (52)
  8 >1yo3_A Dynein light chain 1;   14.1      81  0.0024   12.8   2.4   47   88-134    12-58  (102)
  9 >1mio_B Nitrogenase molybdenum  13.6      83  0.0025   12.7   2.2   33  109-145    22-55  (81)
 10 >3b5i_A S-adenosyl-L-methionin  11.8      95  0.0028   12.3   1.9   32   12-46     67-98  (374)

No 1  
>>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* (A:205-269,A:328-404)
Probab=26.17  E-value=44  Score=14.41  Aligned_cols=55  Identities=18%  Similarity=0.241  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHCC----------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCC
Q ss_conf             9999987765144----------4553068989877640777988665543112243334543-30433
Q gi|255764500|r  127 IASIIWHRYQHMD----------YKGKTEQEKRALAKQSRDDFQRYATAQAANQKAADMLMLA-TYGLQ  184 (200)
Q Consensus       127 iasiiwhryqhmd----------ykgkteqekralakqsrddfqryataqaanqkaadmlmla-tyglq  184 (200)
                      --+|.|+|+..-|          |.|-.|-.-.-|.+-|..   -.++|+|-.|+--+|.|-- -|||-
T Consensus         8 HPpiMYg~W~dWDG~P~~EkPLFYqgl~e~~A~lL~~vS~E---~~~iakaI~~~~p~~dmEDiP~GL~   73 (142)
T 3c7a_A            8 HPAILFGRWGSWDGKPVPEAPLFYQGIDQATADMLTACSNE---CKDVANAIMAACPGNDLEDIPMGMI   73 (142)
T ss_dssp             HHHHHHHHHTTCCSCCBSSCCBSGGGCCHHHHHHHHHHHHH---HHHHHHHHHHHSTTCCCTTTTTTHH
T ss_pred             CHHHHHHHHHHCCCCCCCCCCCHHCCCCHHHHHHHHHHHHH---HHHHHHHHCCCCCCCCHEECCCCHH
T ss_conf             60999855312358854444300226998999999999999---9999998488778876321265289


No 2  
>>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} (A:1-48)
Probab=21.08  E-value=50  Score=14.06  Aligned_cols=22  Identities=36%  Similarity=0.428  Sum_probs=16.1

Q ss_pred             CCCC-CHHHHHHHHHHHHHHHHH
Q ss_conf             4553-068989877640777988
Q gi|255764500|r  140 YKGK-TEQEKRALAKQSRDDFQR  161 (200)
Q Consensus       140 ykgk-teqekralakqsrddfqr  161 (200)
                      |-|. |++.||+|+..--+..-+
T Consensus         8 fpgrlteeQK~~Lae~iT~~v~~   30 (48)
T 1gyx_A            8 FPRELDEQQKAALAADITDVIIR   30 (48)
T ss_dssp             SCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             72542278999988468999999


No 3  
>>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} (A:1-206)
Probab=19.61  E-value=59  Score=13.60  Aligned_cols=31  Identities=52%  Similarity=0.640  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             898987764077798866554311224333454330
Q gi|255764500|r  146 QEKRALAKQSRDDFQRYATAQAANQKAADMLMLATY  181 (200)
Q Consensus       146 qekralakqsrddfqryataqaanqkaadmlmlaty  181 (200)
                      .|.|.|..|   +-.|-..||.|..||||||  |.|
T Consensus       155 rearsl~~~---~~krqkdaq~adkkaadml--a~y  185 (206)
T 1cii_A          155 REARSLIEQ---AEKRQKDAQNADKKAADML--AEY  185 (206)
T ss_dssp             HHHHHHHHH---HHHHHHHHHHHHHHHHHHH--HHH
T ss_pred             HHHHHHHHH---HHHHHHHHHHHHHHHHHHH--HHH
T ss_conf             999867999---9999999998999999989--988


No 4  
>>1brv_A Protein G, BRSV-G region; attachment protein G of bovine respiratory syncytial virus, immunoglobulin-binding protein; NMR {Bovine respiratory syncytial virus} (A:)
Probab=17.78  E-value=44  Score=14.42  Aligned_cols=14  Identities=43%  Similarity=0.653  Sum_probs=7.9

Q ss_pred             CCCCCCCCCCCCCC
Q ss_conf             75655489857778
Q gi|255764500|r   59 DHSDSQHPPVLPNS   72 (200)
Q Consensus        59 dhsdsqhppvlpns   72 (200)
                      ||++||..|-.|-|
T Consensus         4 Dhnn~QtlP~vPcs   17 (32)
T 1brv_A            4 DHNNFQTLPYVPCS   17 (32)
T ss_pred             CCCCCCCCCCCCCH
T ss_conf             44654304654422


No 5  
>>1e6y_B Methyl-coenzyme M reductase I beta subunit; biological methanogenesis, NI-enzyme, oxidoreductase, NI enzyme; HET: MHS AGM F43 TP7; 1.6A {Methanosarcina barkeri} (B:24-183)
Probab=14.36  E-value=72  Score=13.06  Aligned_cols=18  Identities=39%  Similarity=0.783  Sum_probs=9.3

Q ss_pred             HHHHHHHHHH-HHCCCCCC
Q ss_conf             9999998776-51444553
Q gi|255764500|r  126 AIASIIWHRY-QHMDYKGK  143 (200)
Q Consensus       126 aiasiiwhry-qhmdykgk  143 (200)
                      .+-.-+|-+| |.|||.|-
T Consensus       128 ~VkaAv~G~YPQt~D~~Gg  146 (160)
T 1e6y_B          128 IVKSAVWGSYPQTMDLMGG  146 (160)
T ss_dssp             HHHHHHHTTTTTSSSCTTC
T ss_pred             HHHHHHHCCCCCCCCCCCC
T ss_conf             7889987369887787776


No 6  
>>1hbn_B Methyl-coenzyme M reductase I beta subunit; methanogenesis, biological methanogenesis, NI-enzyme, oxidoreductase; HET: MHS AGM MGN F43 TP7; 1.16A {Methanothermobacterthermautotrophicus} (B:44-186,B:405-423)
Probab=14.19  E-value=74  Score=13.01  Aligned_cols=20  Identities=25%  Similarity=0.602  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHH-HHCCCCCC
Q ss_conf             789999998776-51444553
Q gi|255764500|r  124 EEAIASIIWHRY-QHMDYKGK  143 (200)
Q Consensus       124 eeaiasiiwhry-qhmdykgk  143 (200)
                      --.+-.-+|-+| |.|||.|-
T Consensus       109 a~~VkaAVwG~YPQt~D~~Gg  129 (162)
T 1hbn_B          109 ANMVKAAVLGRYPQSVEYMGA  129 (162)
T ss_dssp             HHHHHHHHHTTTTTSSSCTTC
T ss_pred             HHHHHHHHHCCCCCHHHHHHC
T ss_conf             467899986468502666410


No 7  
>>1dqu_A Isocitrate lyase; beta barrel; 2.80A {Emericella nidulans} (A:308-359)
Probab=14.10  E-value=81  Score=12.76  Aligned_cols=17  Identities=47%  Similarity=0.616  Sum_probs=14.2

Q ss_pred             CCCCCCHHHHHHHHHHH
Q ss_conf             44553068989877640
Q gi|255764500|r  139 DYKGKTEQEKRALAKQS  155 (200)
Q Consensus       139 dykgkteqekralakqs  155 (200)
                      .-+||...|-|++||+-
T Consensus        27 ~vkgkSn~EARaiAk~i   43 (52)
T 1dqu_A           27 QSKGKSNLEARAIAKEI   43 (52)
T ss_dssp             HHTTCCHHHHHHHHHHH
T ss_pred             HCCCCCHHHHHHHHHHH
T ss_conf             34677569999999985


No 8  
>>1yo3_A Dynein light chain 1; structural genomics consortium, microtubule, malaria, SGC, transport protein; 1.65A {Plasmodium falciparum 3D7} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 1pwj_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A 1pwk_A (A:)
Probab=14.09  E-value=81  Score=12.76  Aligned_cols=47  Identities=26%  Similarity=0.249  Sum_probs=35.1

Q ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             61002472687420622456887788666543214178999999877
Q gi|255764500|r   88 PTFRRNQPVIENLRKPTEAEKEKILAARDRYQKTNNEEAIASIIWHR  134 (200)
Q Consensus        88 ptfrrnqpvienlrkpteaekekilaardryqktnneeaiasiiwhr  134 (200)
                      +.-...+++|..-.-|.+-..+-+-.+..-+++.+++..||.-|=..
T Consensus        12 ~~~~~~~~~i~~~dM~~~~~~~~~~~~~~al~~~~~~~diA~~IK~~   58 (102)
T 1yo3_A           12 SGLVPRGSVVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKE   58 (102)
T ss_dssp             ------CCCEEETTSCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred             CCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             46564677799779999999999999999998658689999999997


No 9  
>>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} (B:269-309,B:419-458)
Probab=13.59  E-value=83  Score=12.67  Aligned_cols=33  Identities=24%  Similarity=0.394  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHH-HHCCCCCCCH
Q ss_conf             877886665432141789999998776-5144455306
Q gi|255764500|r  109 EKILAARDRYQKTNNEEAIASIIWHRY-QHMDYKGKTE  145 (200)
Q Consensus       109 ekilaardryqktnneeaiasiiwhry-qhmdykgkte  145 (200)
                      +++...|.|.+-    --+-+-.|||| -.+.|+|--.
T Consensus        22 ~~l~reRgrLvD----aM~D~H~yH~yfp~~GY~G~~~   55 (81)
T 1mio_B           22 ASIEEERGQLID----LMIDAQQYHYYNPKVGYKGAIR   55 (81)
T ss_dssp             HHHHHHHHHHHH----HHHHTHHHGGGSCSSBTHHHHH
T ss_pred             HHHHHHHHHHHH----HHHHHHHHCCCCCCCHHHHHHH
T ss_conf             889876999999----9999998756777674877999


No 10 
>>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid; HET: SAH; 2.75A {Arabidopsis thaliana} (A:)
Probab=11.78  E-value=95  Score=12.33  Aligned_cols=32  Identities=16%  Similarity=0.319  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCC
Q ss_conf             10058988977741355776754389731132057
Q gi|255764500|r   12 KLGIVSVLIPVVLGVSNCDHSDSQHPPVIPILKDD   46 (200)
Q Consensus        12 klgivsvlipvvlgvsncdhsdsqhppvipilkdd   46 (200)
                      -|..++.+|-.+-..  |. +..+.||-+-+.-.|
T Consensus        67 tl~~v~~ii~~i~~~--~~-~~~~~~~e~~v~~nD   98 (374)
T 3b5i_A           67 TVHIIDFIVKHISKR--FD-AAGIDPPEFTAFFSD   98 (374)
T ss_dssp             HHHHHHHHHHHHHHH--HH-HTTCCCCCEEEEEEE
T ss_pred             HHHHHHHHHHHHHHH--HH-HCCCCCCCEEEEECC
T ss_conf             799999999999998--62-017999847997178


Done!