RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|255764500|ref|YP_003064987.2| hypothetical protein
CLIBASIA_02305 [Candidatus Liberibacter asiaticus str. psy62]
(200 letters)
>gnl|CDD|171993 PRK13347, PRK13347, coproporphyrinogen III oxidase; Provisional.
Length = 453
Score = 27.7 bits (62), Expect = 2.2
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 15/84 (17%)
Query: 88 PTFRRNQPVIENLRKPTEAEKEKILAARDRYQKTNNEEAIASIIWHRYQH--MDYKGKTE 145
P+ R+NQ +I+ P E+ + A ++ Y +D+ +
Sbjct: 245 PSRRKNQRLIDEAALPDAEERLRQARA-----------VADRLLAAGYVPIGLDHFALPD 293
Query: 146 QE--KRALAKQSRDDFQRYATAQA 167
E + +FQ Y T +
Sbjct: 294 DELAIAQREGRLHRNFQGYTTDRC 317
>gnl|CDD|151035 pfam10463, Peptidase_U49, Peptidase U49. This family contains Lit
peptidase from Escherichia coli. Lit protease functions
in bacterial cell death in response to infection by
bacteriophage T4. Following binding of Gol peptide to
domains II and III of elongation factor Tu, the Lit
peptidase cleaves domain I of the elongation factor.
This prevents binding of guanine nucleotides, shuts down
translation and leads to cell death.
Length = 203
Score = 26.7 bits (59), Expect = 4.0
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Query: 97 IENLRKPTEAEKEKILAARDRYQKTNNE---EAIASIIWHRYQH--MDYKGKTEQEKRAL 151
E L P E + E YQ NE A+A I+ H H + ++G + E
Sbjct: 68 PEGLPNPEENKDESP---EQFYQPAVNELFLCALAWILLHEVAHIILQHEGNSSNE---P 121
Query: 152 AKQSRDDFQRYAT 164
+ + YAT
Sbjct: 122 SLDEEKEADSYAT 134
>gnl|CDD|165568 PHA03322, PHA03322, tegument protein VP11/12; Provisional.
Length = 674
Score = 26.5 bits (58), Expect = 4.4
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 7/42 (16%)
Query: 61 SDSQHPPVLPNSENNAHGDEPIKKSEKPTFRRNQPVIENLRK 102
+D P P+ DEP++ TF P L K
Sbjct: 619 TDGGSPVQFPD-------DEPVQCQVTETFAAFTPRAHCLGK 653
>gnl|CDD|131899 TIGR02852, spore_dpaB, dipicolinic acid synthetase, B subunit.
Members of this family represent the B subunit of
dipicolinic acid synthetase, an enzyme that synthesizes
a small molecule that appears to confer heat stability
to bacterial endospores such as those of Bacillus
subtilis. The A and B subunits are together in what was
originally designated the spoVF locus for stage V of
endospore formation.
Length = 187
Score = 26.6 bits (59), Expect = 4.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 75 NAHGDEPIKKSEKPTFRRNQPVI 97
NA D P+ + K T R N+PV+
Sbjct: 98 NAMTDSPVLMAAKATLRNNKPVV 120
>gnl|CDD|181920 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 26.3 bits (58), Expect = 5.3
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 105 EAEKEKILAARDRYQKTNNEEAIASIIWHRYQHMDYKGKTEQEKR---ALAKQSRDDFQR 161
E +K+ AA+ K E A+ K K E E + A AK++ + ++
Sbjct: 115 EQKKQAEEAAKQAALKQKQAEEAAAK-----AAAAAKAKAEAEAKRAAAAAKKAAAEAKK 169
Query: 162 YATAQAANQKAAD 174
A A+AA + AA+
Sbjct: 170 KAEAEAAKKAAAE 182
>gnl|CDD|178702 PLN03157, PLN03157, spermidine hydroxycinnamoyl transferase;
Provisional.
Length = 447
Score = 26.3 bits (58), Expect = 6.2
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 50 GEPRKPTP-LDHSDSQHPPVLPNSENNAHGDEPIKKSEKPTFRRNQPVIENLRKPTEAEK 108
GEP P DH++ HPP+L ++N +E KK+ + ++ +E L+ +A +
Sbjct: 192 GEPPLSAPVFDHAEFSHPPLLIGEQDNV--EERKKKTTVAMLKLSKDQVEKLKD--KANE 247
Query: 109 EKILAARDRYQKTNNEEAIASIIW 132
+ + D + E +A +W
Sbjct: 248 SR---SSDNGRPYTRYETVAGHVW 268
>gnl|CDD|180722 PRK06840, PRK06840, hypothetical protein; Validated.
Length = 339
Score = 26.1 bits (58), Expect = 6.4
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 12/76 (15%)
Query: 111 ILAARDRYQKTN-NEEAIASIIWHRYQHMDY-----KGKTEQE---KRALAKQSRDDFQR 161
I AA+ ++ + AI +I+ +H DY K + E K A A D
Sbjct: 58 IAAAKPALKQAGVDPAAIDVVIYIGSEHKDYPVWSSAPKIQHEIGAKNAWA---FDIMAV 114
Query: 162 YATAQAANQKAADMLM 177
A+ A + A D+L
Sbjct: 115 CASFPIALKVAKDLLY 130
>gnl|CDD|172646 PRK14158, PRK14158, heat shock protein GrpE; Provisional.
Length = 194
Score = 25.7 bits (56), Expect = 7.9
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
Query: 90 FRRNQPVIENLRKPTEAEKEKILAARDRYQKTNNEEAIASII 131
+ R + +EN RK + EKE++L K NE I I+
Sbjct: 63 YLRERADLENYRKRVQKEKEELL-------KYGNESLILEIL 97
>gnl|CDD|182079 PRK09793, PRK09793, methyl-accepting protein IV; Provisional.
Length = 533
Score = 25.4 bits (55), Expect = 10.0
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 156 RDDFQRYATAQAANQKAADM------LMLATYGLQYDDSLTKIQDPP 196
RDD QR + +NQ+ A + ++ A+ L +LT + P
Sbjct: 34 RDDLQRLNQVEQSNQQRAALAQTRAVMLQASTALNKAGTLTALSYPA 80
>gnl|CDD|164934 PHA02538, N, capsid protein; Provisional.
Length = 348
Score = 25.5 bits (56), Expect = 10.0
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 157 DDFQRYATAQAANQKAADMLMLATYGLQYDDSLTKIQDP 195
DDFQ+ Q+A D +M+ G+ + + +P
Sbjct: 124 DDFQKLIREFIQKQQALDRIMIGWNGVSAAATTDRSANP 162
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.311 0.129 0.370
Gapped
Lambda K H
0.267 0.0684 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,275,221
Number of extensions: 197180
Number of successful extensions: 362
Number of sequences better than 10.0: 1
Number of HSP's gapped: 361
Number of HSP's successfully gapped: 32
Length of query: 200
Length of database: 5,994,473
Length adjustment: 89
Effective length of query: 111
Effective length of database: 4,071,361
Effective search space: 451921071
Effective search space used: 451921071
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.1 bits)